Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 120 of 195
Found at i:20751659 original size:25 final size:26
Alignment explanation
Indices: 20751613--20751661 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
20751603 ATCCAATCTT
*
20751613 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTACGTATGCTC
*
20751639 AGACT-GGAATGAACTATGTATGC
1 AGACTGGGAATGAACTACGTATGC
20751662 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 16 0.76
26 5 0.24
ACGTcount: A:0.31, C:0.18, G:0.27, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTACGTATGCTC
Found at i:20752294 original size:893 final size:893
Alignment explanation
Indices: 20750580--20755855 Score: 5104
Period size: 893 Copynumber: 6.0 Consensus size: 893
20750570 CCCCAATCAT
* * ** * * * * * *
20750580 CGAAACCCCAGTGCCATCAATCAGGTTCTCTGGCGATGCTCTGACGATGGTGGCCTGACGAAGAA
1 CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA-AA
* * * * * * **
20750645 -AAATACGGCCCCAACACAT-GCTTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGA
65 GAAATGCGACACCAGCACATGGC-TGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCAA
* *
20750708 TCTTAGACTGGGAATGAACTCC-TATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACC
129 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
20750772 CACGAAACGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGTAAGCCGGTGATC-AGT
194 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG-GATCGACT
* * * * * * * * *
20750836 CAGGTGCCCCTCTACATGCTATCGATCCTGCTACCACAACCCTCAGTCTGGTCTGATCTTAGATT
258 CGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACT
* * *
20750901 GGGAATGAACTCCGTATGCCAAAGCCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCGGGCACT
323 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A------A-GCAGGCGGGCGGGCACT
* * *
20750966 ACACCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGCGTGGTAGGTGGGTTTAGGCAC
380 AC-GCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
20751031 ATCTTCATATCTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
444 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
20751096 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTCAAACTTTT
509 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTT
* * *
20751161 TATGGTTCGGGAATTTTTAAAATTTTTTCAGAAAGG-GTTTGGGCCCCAAACTTGGTAGACATGA
574 TACGGTTCGGGATTTTTTAAAATTTTTT-AGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
*
20751225 TCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTG
638 TCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
20751290 TGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGGAAACCTGTAAA
703 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
20751355 ATCTCAAATGCTCTTTAAGAGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAAA
768 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
*
20751420 AGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGC
833 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGC
* * * *
20751481 CGAAACCCCAATGTCATCGGTCAGGTTCTCCGACGATGCTCCGGCAATGGTGCCCCAACGAAAAG
1 CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAAAG
** * * *
20751546 AAATGCGACACCAGCATGTGGCTAAGCCCAGCATGTGCT-CCTGCAACCCTTGGTTTGATCCAAT
66 AAATGCGACACCAGCACATGGCTGAGCCCAGCATGTGCTGCC-GCAACCCTCGGTCTGATCCAAT
* **
20751610 CTTAGACTGGGAATGAACTCCGTATGCTCAGACT-GGAATGAACTATGTATGCCTAAGTCAACCC
130 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
20751674 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCAAGAGGGGCGGGATGCACAAGCTGAGGATCGACT-
195 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGACTC
* * *
20751738 GGGTCCCCTTCTGCGTGTTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTG
259 GGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTG
20751803 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGGCGGGCACTACGTCGGCC
324 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGGCGGGCACTACG-CGGCC
* * *
20751868 AGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATAACTTCATA
388 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
20751933 TTT-TCACATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
453 TTTCT-ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
20751997 GTGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCATGATTTTTCAAACTTTTTATGGTTC
517 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTC
* *
20752062 GGGAATTTTTAAAATTTTTTCAGAAAGG-GTTTGGGCCCCAAACTTGGTAGACATGATCCTTGTA
582 GGGATTTTTTAAAATTTTTT-AGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
*
20752126 TTTTTTTTGGCATGCATAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATT
646 TTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
20752191 TGAAAGAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAA
711 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* ** * *
20752256 TGCCCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAAAAGGTCCAA
776 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
20752321 ATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCAC
841 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGC
* * ** * *
20752375 TGAAACCCCAATGTCACCGGTCAGGTTCT-C--CGA--------CGATGGTGCCACGACGAAGAG
1 CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAAAG
* * * ** *
20752429 AAATGCGACACCAGCACATGGCCGAGCCCAGCATGTGGTACCATAACCCTCGGTCTGGTCCAA--
66 AAATGCGACACCAGCACATGGCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCAATC
*
20752492 -T---CT-----T--A----G-A--C-T-G----GGAATGAACTCCGTATGCCTAAGTCAACGCA
131 TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * ** * * *** * *
20752533 CGAAATGAGCGTGCGGGCGCTCAGCCGG--GGATCAGTCGGG-T-CCCCCTCTGCG-T-G-CTAC
196 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GGGGCGGGATGCGCAAGCCGGGATCGACT-C
* * *** * * * ** * * ** * ** * *
20752591 CGATCTTGCTGCCGTA-ACCCTCGATCCGGTCTG--ATCTTAGACTGGGAATAAACTCCG-T-AT
259 GGGTCCCCCT-CTGCATGCTGTCGATCCTG-CTGCCA-C-AACCCTCGGTCT-GA-TCCGATCTT
* * * * * * ** ** * *
20752651 A-CCT---AA-GCCAA--CCG-A---CGAAACGAGCAGACG-GGCGGGCGGGCGGGC--ACTACG
318 AGACTGGGAATG--AACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGGCGGGC-AC-
* * * * * ** * ** *
20752702 T-CG-GCCAAAGAGACAGGATGCGTAAGC-C--GTGGATCGAT--AGGGTGGTAGGT--G-GGTT
379 TACGCGGC-CAGAG--A-GACG-GGATGCGCAAGCCG-TGGATCGATAG-GGT-GGTAGGTGGGT
** * * * * * *** ** * *** *
20752757 TAGGCACATCTTCTT-AT-TTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATG
436 TTAG-GCA-CATCTTCATATT-T-C-T-AC-ATGCCAATGCCAT-TTTTATGGCTT-GTA-AAT-
* * * * * * **** *
20752820 GTCCCT-TAA--G--CCTTCA--CGTGAAGT----TTCATG-GCAAGACGACTCGTTTTCTGTTT
490 -T-CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
** ** * * * *
20752873 TTCACAATTTTGGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTGTTGGAAA-TATTTTTGG
553 TTCATGATTTTTCAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT-TTAGAAAGGAGTTTTGG
* *
20752937 CCCCAAACTTGGTAGACAAGATCCTTTTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAA
617 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAA
* * * **
20753002 CTCGAAGGGTACAAGTTTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGATGCTTTAATGGC
682 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
20753067 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGAT
747 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
* * *
20753132 GAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGTGCACCCCC
812 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CACC
* *
20753197 TCCCCGGCCTCTCGATCGC
876 -CCCCGGCCCCCCGATCGC
* * * * * * **
20753216 C-AGAACCGCATTGCCGTCGATCAGGTGCTCCGACGATGCTCCAGCGATGGTGCCCTGGTGAAGA
1 CGA-AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA-A
* *
20753280 A-AAATGCGGCACCAGCACAT-GCTCGAGCCCAACATGTGCTGCCGCAA-CC-C--TCTG-----
64 AGAAATGCGACACCAGCACATGGCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCA
* *
20753334 -TC-----C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAAC
128 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAAC
* *
20753382 CCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA-
193 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGATCGAC
* * * * * * *
20753446 TCGGTTCCCCCTCTGCGTGCTGCCGATCCTGCT-CACGCAACCCTCGGTTTGGTCTGATCTTAGA
257 TCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGC-CACAACCCTCGGTCTGATCCGATCTTAGA
* * * ** *
20753510 CTGGGAATGGACTCCGTATGCCTAAGCCAACCGAAGAATCGTGCGGGCAAGCGGGCGGGCACTAC
321 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA----ACAAGCAGGCGGGCGGGCACTAC
* *
20753575 GCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACAT
382 G-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
20753640 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
446 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
20753705 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
511 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTA
* * *
20753770 TGGTTCGGGATTTTTTAAAATTTTTGT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
576 CGGTTCGGGATTTTTTAAAATTTTT-TAGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
* *
20753834 CTTGTATTTTTTTTGGCATGC-TCAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGGTTTTGT
640 CTTGTATTTTTTTTGGCATGCAT-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * *
20753898 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTAGCAGCAACCCTATAAAA
704 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * **
20753963 TCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGAATAGGGGGCCAACGTAA
769 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
20754028 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-----C--CCCCCCGATTGT
834 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGC
* * * * * * * *
20754081 AGGAACCCTAATGCCGTCGATCAGGTTCTCCAATGATGCTCCGACGATGGTGCCCCGACGAAGAG
1 CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAAAG
* * * *
20754146 AAATGCGTCACCAGCACAT-GCTCGAGCCCAACATGCGCTGCCGTAACCCTCGGTCCT-ATCCAA
66 AAATGCGACACCAGCACATGGCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CTGATCCAA
* *
20754209 TCTTAGACTAGGAATGAACTCCGTATGCTTATACTAGGAATGAACTCCGTATGCCTAAGTCAACC
129 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
20754274 CATGAAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATGGGCT
194 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGATCGACT
* * * * * * * *
20754339 -GGGTCCCCATCTGCATGCTGCCGATCCTACTG-TAGCAACCCTTGGTC-CAGTCTGAGCTTAGA
258 CGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCA-CAACCCTCGGTCTGA-TCCGATCTTAGA
*
20754401 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AAGGA-GCGGGCGGGCACTACGCTG
321 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGGCGGGCACTACGC-G
* *
20754462 GCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTC
385 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*** * *
20754527 ATATTTCTGTGTTCCAATGCCATTTTTATGGCTTGTAGATTCATACAATGGTCCCTTAAGCCTTC
450 ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
20754592 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTCAAAACATTTTACGG
515 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTC-AAACTTTTTACGG
* * * * * *
20754656 TTCAGGATTTTTTAAAATTTTTTTTGGATGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTT
579 TTCGGGATTTTTTAAAA-TTTTTTAGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT
* * * * * *
20754721 GTATTTTTGTAGGCATGCACAAAAAAATTCAACTAAAAGCTCGAAGTGTACAAGATTTTGCGACC
643 GTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
20754786 ATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCT
708 ATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
* ** *
20754851 CAAATGTTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGG
772 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * ** *
20754915 CCAAGTACCAGCACCCGTCGCACATCATGTGTGGACACCCCCCCCATTCCCCCCGATCAC
837 CCAAGTACCAGCACCCATCGCACATCATGTG-CG-CACACCCCCC-GGCCCCCCGATCGC
* * * * *
20754975 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATAGTGCCACGACGAAGAA
1 CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA-AA
* * * * * * * * * **
20755040 -AATTGTGGCACCAGCACATGTCCGAGCCCAGCATGGGCTGTCGCAACCCTCGATCCGATCTGAT
65 GAAATGCGACACCAGCACATGGCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCAAT
* *
20755104 CTTAGACTGGGAATGAACTCCGTATGCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCT
130 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * ** *
20755169 ACGAAATGAGTGTGTGAGCGCTCAGCCGGCCAGAGGGGCAGGATGCATAAGCCGAGGATC-AGTC
195 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGATCGACTC
* * * * * *
20755233 GGGTCCCCCTCTGCATGTTGTCGATCCTACTACCACAACCCTCAGTCTGGTCCGATATTAGACTG
259 GGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTG
* * * * *
20755298 GGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGCGAGCGGGCAGGCACTACGTC
324 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC---AG-GCGGGCGGGCACTACG-C
* * *
20755363 GGCTAGAGAGACGGGATGCGCCAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
384 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* * * * *
20755428 CATATTTCTACGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATGCAGTGGTCCCTTAAGCCAT
449 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
20755493 CACATGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG
514 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTACGG
* * * *
20755558 TTAGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
579 TTCGGGATTTTTTAAAATTTTTTAGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
* * *
20755623 TATTTTTTTTTGGCTTGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACC
644 TA-TTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * * * * * *
20755688 ATTCTG-AAACA-TGTCCCCA-GTCAGAGCA-TTTCAGGGCTACTAGCAG-TAACCTAT-AAATC
708 ATT-TGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * *
20755747 TCAAATGCTC-TT--GGGGCTGTGAGTTTCTCGAGGTTTGATGTGGGAT-GAGAGG-CAA-ATAA
771 TCAAATGCTCTTTAAGGGGGTGTGAG-TTCTCAAGGTTTGATGAGGGATAG-GGGGCCAATATAA
* * * * * *
20755806 GGGCTC-AGT-TCACCACCCCTCTCACATCATGTGCGTCAGACCCCTCGGCC
834 GGGC-CAAGTACCAGCACCCATCGCACATCATGTGCG-CACACCCCCCGGCC
20755856 ATCGGGATCG
Statistics
Matches: 3616, Mismatches: 550, Indels: 428
0.79 0.12 0.09
Matches are distributed among these distances:
840 309 0.09
841 41 0.01
842 23 0.01
843 13 0.00
844 23 0.01
845 23 0.01
846 13 0.00
847 11 0.00
848 8 0.00
849 8 0.00
850 3 0.00
851 11 0.00
852 109 0.03
853 21 0.01
854 20 0.01
855 11 0.00
856 21 0.01
857 23 0.01
858 57 0.02
859 1 0.00
860 2 0.00
861 5 0.00
862 3 0.00
863 4 0.00
864 1 0.00
865 113 0.03
866 5 0.00
867 12 0.00
868 12 0.00
869 11 0.00
870 25 0.01
871 15 0.00
872 14 0.00
873 17 0.00
874 305 0.08
875 2 0.00
877 2 0.00
880 2 0.00
882 7 0.00
883 279 0.08
884 183 0.05
885 67 0.02
886 3 0.00
887 2 0.00
889 1 0.00
890 2 0.00
891 175 0.05
892 11 0.00
893 529 0.15
894 342 0.09
895 16 0.00
896 26 0.01
897 16 0.00
898 6 0.00
899 19 0.01
900 15 0.00
901 335 0.09
902 276 0.08
903 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAAAG
AAATGCGACACCAGCACATGGCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCAATC
TTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCA
CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGATCGACTCGG
GTCCCCCTCTGCATGCTGTCGATCCTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCAGGCGGGCGGGCACTACGCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTCGGGA
TTTTTTAAAATTTTTTAGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
TTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGC
Found at i:20754246 original size:26 final size:26
Alignment explanation
Indices: 20754210--20754262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20754200 CCTATCCAAT
20754210 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20754236 CTTATACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20754262 C
1 C
20754263 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20755133 original size:26 final size:26
Alignment explanation
Indices: 20755104--20755156 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20755094 CCGATCTGAT
* *
20755104 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
20755130 CTTAAACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
20755156 C
1 C
20755157 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:20755808 original size:894 final size:883
Alignment explanation
Indices: 20752555--20755849 Score: 4006
Period size: 874 Copynumber: 3.7 Consensus size: 883
20752545 GCGGGCGCTC
* * * * ** * *
20752555 AGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCGTAACCCTCGATCCGG
1 AGCCGGGGATC-GTCGGGTCCCCCTCTGCATGCTGCCGATCCTACT-CCACAACCCTCGGTCTGG
* * *
20752620 TCTGATCTTAGACTGGGAATAAACTCCGTATACCTAAGCCAACCGACGAAACGAGCAGACGGGCG
64 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAAC--G-AG-CGGGCG
* * * *
20752685 GGCGGGCGGGCACTACGTCGGCCAAAGAGACAGGATGCGTAAGCCGTGGATCGATAGGGTGGTAG
125 AGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
20752750 GTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATA
189 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* **
20752815 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCACAA
254 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * ** *
20752880 TTTTGGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTGTTGGAAATATTTTTGGCCCCAAAC
319 TTTTTGAAACTTTTTACGGTT-AGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
** * * * *
20752945 TTGGTAGACAAGATCCTTTTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGG
383 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGT
* * ** *
20753010 GTACAAGTTTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGATGCTTTAATGGCTACTGGCA
448 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCA
* **
20753075 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATA
513 G-AAACCTATAAAATCTCAAATGCTCTTT-A-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
20753140 GGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGTGCACCCCCTCCCCGGC
575 -GGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCC--C
* * * * * * * *
20753205 CTCTCGATCGCCAGAACCGCATTGCCGTCGATCAGGTGCTCCGACGATGCTCC-AGCGATGGTGC
636 AT-T-G-TAG---GAACCCCAATGCCGCCGATCAGGTTCTCCAACGATGCTCCGA-CGATAGTGC
** * *
20753269 C-CTGGTGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAACATGTGCTGCCGCAACCCTC-
694 CAC-GACGAAGAGAAATGCGGCACCAGCACATGCTCGAGCCCAACATGCGCTGCCGCAACCCTCG
* * *
20753332 -T--G------TC-----C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGCATGC
758 ATCCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGAATGAACTCCGTATGC
*
20753372 CTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
823 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * *
20753433 AGCCGGGGATCGATCGGTTCCCCCTCTGCGTGCTGCCGATCCTGCTCACGCAACCCTCGGTTTGG
1 AGCCGGGGATCG-TCGGGTCCCCCTCTGCATGCTGCCGATCCTACTC-CACAACCCTCGGTCTGG
* * * *
20753498 TCTGATCTTAGACTGGGAATGGACTCCGTATGCCTAAGCCAACCGAAGAATCGTGCGGGCAAGCG
64 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGAGCG
* *
20753563 GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGG
129 GGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
20753628 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
193 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
20753693 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
258 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * *
20753758 TGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTGTGGAAGGAGTTTTGGCCCCAAACTTGG
323 TGAAACTTTTTACGGTT-AGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
20753823 TAGACGTGATCCTTGTATTTTTTTTGGCATGCTCAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
387 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTAC
* *
20753888 AAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTAGCAGCAA
452 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG-AA
* * * *
20753953 CCCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGAATAGGGG
516 ACCTATAAAATCTCAAATGCTCTTT-A-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGG
* *
20754018 GCCAACGTAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATTGTAG
578 GCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCATTGTAG
* * * * *
20754083 GAACCCTAATGCCGTCGATCAGGTTCTCCAATGATGCTCCGACGATGGTGCCCCGACGAAGAGAA
643 GAACCCCAATGCCGCCGATCAGGTTCTCCAACGATGCTCCGACGATAGTGCCACGACGAAGAGAA
* * * *
20754148 ATGCGTCACCAGCACATGCTCGAGCCCAACATGCGCTGCCGTAACCCTCGGTCCTATCCAATCTT
708 ATGCGGCACCAGCACATGCTCGAGCCCAACATGCGCTGCCGCAACCCTCGATCCGATCCAATCTT
* *
20754213 AGACTAGGAATGAACTCCGTATGCTTATACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATG
773 AGACTAGGAATGAACTCCGTATGCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * **
20754278 AAACGAGCGTACGGGCACTCAGCCGGCCAGAGGGGTGGGATGCGCA
838 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * * ** * **
20754324 AGTCGGGGATGGGCTGGGTCCCCATCTGCATGCTGCCGATCCTACTGTAGCAACCCTTGGTCCAG
1 AGCCGGGGATCGTC-GGGTCCCCCTCTGCATGCTGCCGATCCTACTCCA-CAACCCTCGGTCTGG
* *
20754389 TCTGAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A----G-GAGCG
64 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGAGCG
*
20754446 GGCGGGCACTACGCTGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
129 GGCGGGCACTACGC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
20754511 GTTTAGGTACATCTTCATATTTCTGTGTTCCAATGCCATTTTTATGGCTTGTAGATTCATACAAT
193 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
20754576 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
258 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
** * * *
20754641 CAAAACATTTTACGGTTCAGGATTTTTTAAAATTTTTTTTGGATGGAGTTTTGACCCCAAACTTG
323 TGAAACTTTTTACGGTT-AGGATTTTTTAAAA-TTTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
* * *
20754706 GTAGACGTGATCCTTGTATTTTTGTAGGCATGCACAAAAAAATTCAACTAAAAGCTCGAAGTGTA
386 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTA
* * *
20754771 CAAGATTTTGCGACCATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGC
451 CAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG-
* * *
20754836 AAACCTGTAAAATCTCAAATGTTCTTTAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAAGG
514 AAACCTATAAAATCTCAAATGCTCTTT-AGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGG
* * * *
20754901 GGCCAATATAAGGGCCAAGTACCAGCACCCGTCGCACATCATGTGTGGACACCCCCCCCATTCCC
577 GGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCATT---
* *
20754966 CCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATAGTGCCAC
639 ---G-T-A--GGAACCCCAATGCCGCCGATCAGGTTCTCCAACGATGCTCCGACGATAGTGCCAC
* * * *
20755031 GACGAAGA-AAATTGTGGCACCAGCACATG-TCCGAGCCCAGCATGGGCTGTCGCAACCCTCGAT
697 GACGAAGAGAAA-TGCGGCACCAGCACATGCT-CGAGCCCAACATGCGCTGCCGCAACCCTCGAT
** *
20755094 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTAGGAATGAACTCCGTATGCCT
760 CCGATCCAATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGAATGAACTCCGTATGCCT
* * * * * **
20755159 AAGTCAACCTACGAAATGAGTGTGTGAGCGCTCAGCCGGCCAGAGGGGCAGGATGCATA
825 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
* * * *
20755218 AGCCGAGGATCAGTCGGGTCCCCCTCTGCATGTTGTCGATCCTACTACCACAACCCTCAGTCTGG
1 AGCCGGGGATC-GTCGGGTCCCCCTCTGCATGCTGCCGATCCTACT-CCACAACCCTCGGTCTGG
* * * *
20755283 TCCGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGAGCGGGCGAGCG
64 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGAGCG
* * * *
20755348 GGCAGGCACTACGTCGGCTAGAGAGACGGGATGCGCCAGACGTGGATCGATAGGGTGGTAGGTGG
129 GGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
20755413 GTTTAGGCACATCTTCATATTTCTACGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATGCAGT
193 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
20755478 GGTCCCTTAAGCCATCACATGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTT
258 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
*
20755543 TGAAACTTTTTGCGGTTAGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
323 TGAAACTTTTTACGGTTAG-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
* *
20755608 TAGACATGATCCTTGTATTTTTTTTTGGCTTGCACAAAAAAATTCAACTAAAAACTCGAAGTGTA
387 TAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTA
* * * *
20755673 CAAGATTTTGTGACCATTCTG-AAACA-TGTCCCCA-GTCAGAGCA-TTTCAGGGCTACTAGCAG
451 CAAGATTTTGTGACCATT-TGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGGCTACTAGCAG
* *
20755734 TAACCTAT-AAATCTCAAATGCTC-TT-GGGGCTGTGAGTTTCTCGAGGTTTGATGTGGGATGAG
514 AAACCTATAAAATCTCAAATGCTCTTTAGGGG-TGTGAG-TTCTCGAGGTTTGATGAGGGAT-AG
* * * * * *
20755796 AGG-CAA-ATAAGGGCTC-AGT-TCACCACCCCTCTCACATCATGTGCGTCAGACCCC
576 GGGCCAACATAAGGGC-CAAGTACCAGCACCCATCGCACATCATGTGCG-CACACCCC
20755850 TCGGCCATCG
Statistics
Matches: 2111, Mismatches: 239, Indels: 118
0.86 0.10 0.05
Matches are distributed among these distances:
865 98 0.05
866 2 0.00
867 1 0.00
868 2 0.00
869 1 0.00
870 1 0.00
871 1 0.00
873 4 0.00
874 474 0.22
875 3 0.00
876 1 0.00
877 2 0.00
878 101 0.05
880 1 0.00
882 3 0.00
883 216 0.10
884 195 0.09
885 67 0.03
887 2 0.00
889 1 0.00
890 5 0.00
891 173 0.08
892 1 0.00
893 25 0.01
894 316 0.15
895 15 0.01
896 26 0.01
897 15 0.01
898 6 0.00
899 19 0.01
900 10 0.00
901 54 0.03
902 267 0.13
903 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
AGCCGGGGATCGTCGGGTCCCCCTCTGCATGCTGCCGATCCTACTCCACAACCCTCGGTCTGGTC
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACGAGCGGGCGAGCGGG
CGGGCACTACGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTACGGTTAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGAAACCTA
TAAAATCTCAAATGCTCTTTAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAACAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCCATTGTAGGAACCCCA
ATGCCGCCGATCAGGTTCTCCAACGATGCTCCGACGATAGTGCCACGACGAAGAGAAATGCGGCA
CCAGCACATGCTCGAGCCCAACATGCGCTGCCGCAACCCTCGATCCGATCCAATCTTAGACTAGG
AATGAACTCCGTATGCTTAAACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
Found at i:20756615 original size:26 final size:26
Alignment explanation
Indices: 20756586--20756638 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20756576 CTGGTCCGAT
20756586 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20756612 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20756638 C
1 C
20756639 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20757504 original size:26 final size:26
Alignment explanation
Indices: 20757475--20757527 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20757465 CCGGTCCAAT
20757475 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20757501 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20757527 C
1 C
20757528 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20758082 original size:888 final size:887
Alignment explanation
Indices: 20755939--20760258 Score: 6596
Period size: 888 Copynumber: 4.9 Consensus size: 887
20755929 GCGGGCGGGA
* * * * * *
20755939 GCACTATGTCGGCCAAAGAGAC-GGATGTGCAAGCGATGAATCGATACGAGT-GTAGGT-GGTTT
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCG-TGGATCGATA-GGGTGGTAGGTGGGTTT
*
20756001 AGGCACATCTTCATATTTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGT
64 AGGCACATCTTCATATTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
20756066 CCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
129 CCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
20756131 AACTTTTTGCAGTTTGAGATTTTTTAAAAGTTTTTTGGAAAGAGTTTTTGCCCCAAACTTGGTAG
194 AACTTTTTGCAGTTCGAGATTTTTTAAAAGTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAG
* *
20756196 ACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGGTAAAAACTCGAAGTGTACAAG
259 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
20756261 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACATTTTAATGGCTACTGGCAGCAAACC
324 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
20756326 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
389 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
20756391 AATATAAGGGCCAAGTACTAGAACCCATTGCACATCATGTGCGCACACCCCCCCGGCCCCCCGAT
454 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGAT
*** *
20756456 CGTCGGACTTTAAAGTCGTCGGTCAGGTTCT-CGGTGATGCTCCGATGATGGTGCCCCAGCGAAG
518 CGTCGGACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCC-GCGAAG
* * * *
20756520 AAAAACGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGA
582 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* *
20756585 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACG
647 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
20756650 CATGAAACGAGCGTGCGGCCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGG-C
712 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * * *
20756714 TGAGTCCCCCTTTACGTGCTGCCACAACCCTCGATCGGGTTCGATCTTAGACTAGGAATGAACTT
777 -GGGTCCCCCTTTACGTGCTGCCACAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTC
* * *
20756779 CGTATGCCTAAGCTAACCGACGAAATGAACGGGCGGGCGGGAGGGCGG
841 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGAGGGCGG
* * * *
20756827 GCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCGATGAATCGATAGAGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCG-TGGATCGATAGGGTGGTAGGTGGGTTTA
* *
20756892 GGCACATCTTCATATTTTCTGCGTGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTC
65 GGCACATCTTCATATTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
20756957 CCTTAAGGCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
130 CCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
*
20757022 ACTTTTTGCAGTTTGAGATTTTTTAAAAGTTTTTTC-GAAAGAGTTTTGGCCCCAAACTTGGTAG
195 ACTTTTTGCAGTTCGAGATTTTTTAAAAG-TTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAG
* *
20757086 ACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAG
259 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
20757151 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACATTTTAATGGCTACTGGCAGCAAACC
324 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
20757216 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
389 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
20757281 AATATAAGGGCCAAGTACTAGAACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
454 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
** * *
20757346 GTCGGACCTTAAAGTCGTCGGTCAGGTTCT-CGGCGATGCTCCGATGATGGTGCCCCAGCGAAGA
519 GTCGGACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCC-GCGAAGA
* * * *
20757410 AAAACGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCAAT
583 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* *
20757475 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACGC
648 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
20757540 ATGAAACGAGCGTGCGGCCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCG
713 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
* *
20757605 AGTCCCCCTTTACGTGCTGCCACAACCCTCGATCTGGTTCGATCTTAGACTAGGAATGAACTCCG
778 GGTCCCCCTTTACGTGCTGCCACAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCG
*
20757670 TATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGAGGGCGG
843 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGAGGGCGG
* * * *
20757715 GCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCGATGAATCGATAGAGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCG-TGGATCGATAGGGTGGTAGGTGGGTTTA
* *
20757780 GGCACATCTTCATATTTTCTGCACGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTC
65 GGCACATCTTCATATTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
20757845 CCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
130 CCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
20757910 ACTTTTTGCAGTTCGAGATTTTTTAAAAGTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGA
195 ACTTTTTGCAGTTCGAGATTTTTTAAAAGTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGA
*
20757975 CGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
260 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
20758040 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCT
325 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
20758105 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
390 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
20758170 ATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCA
455 ATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
* * * *
20758235 TCGGACCCTAAAGTCGTCGGTCAGGTTCT-CGGCGATGCTCCGACGATGGTGCCCCAGCGAAGAA
520 TCGGACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCC-GCGAAGAA
* * * *
20758299 AAACGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCACCCCACGGTCCGGTCCGATC
584 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* * * *
20758364 TTAGACTGGGATTGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGGCAACGCA
649 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
20758429 TGAAACGAGCGTGCGGCCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGA
714 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* * *
20758494 GTCCCCCTTTACGTGCTGCCACAACCCTTGATCTGATTCGATCTTAGACTAGGAATGAACTCCGT
779 GTCCCCCTTTACGTGCTGCCACAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGT
* * * *
20758559 ATGCGTAAGCCAACCGACGAAATGAGTGGACGGGCGGGAGGGCGG
844 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGAGGGCGG
* * * *
20758604 GCACTACGTCGGCCAGAGAGACGGGATGTGCAAGCGATGAATCGATAGAGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCG-TGGATCGATAGGGTGGTAGGTGGGTTTA
*** *
20758669 GGCACATCTTCATATTTTCTGCGCACCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTC
65 GGCACATCTTCATATTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
20758734 CTTTAAGCCTTCACGTGAAGTTTCATGCTAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
130 CCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
*
20758799 ACTTTTTGCAGTTTGAGATTTTTTAAAAGTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAAG
195 ACTTTTTGCAGTTCGAGATTTTTTAAAAGTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGT-AG
*
20758864 ACGTGATCCTTGTATTTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
259 ACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
20758929 GATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACATTTTAATGGCTACTGGCAGCAAAC
323 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
20758993 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
388 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
20759058 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGA
453 CAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCC-CGA
* ** * *
20759123 TCGTCGGAACCGTA-GTGCGCCAGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCTGGCG
517 TCGTCGGACCCCAATGT-CGTC-GGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCC-CGCG
*** * * * *
20759187 AAGAAAAACATGGTACCAGCACAAGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTC
579 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
*
20759252 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
644 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
20759317 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGTGGGATGCGCAAGCCGGGGATCG
709 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * *
20759382 GTCGGGTCCCCCTCTGCGTGCTACTGATCCTGCTGTCGCAACCCTC-AGTCTAGTCCGATCTTAG
774 GTCGGGT-CCCC-CT---T--TAC-G----TGCTGCCACAACCCTCGA-TCTGGTTCGATCTTAG
* *
20759446 ACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA----GCGGGC---GGGCGG
826 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGAGGGCGG
*
20759501 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
1 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAG-CGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
20759566 GGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTC
65 GGCACATCTTCATATTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
20759630 CCTTAAGCCTTCACGTGAAGTTTCATG-GATAGACGACTCGTTTTCTATTTTTCACGATTTTT-A
130 CCTTAAGCCTTCACGTGAAGTTTCATGCCA-AGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * * * ** *
20759693 AAATTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGTGTTTTCACCCCAAAATTGGTAG
194 AACTTTTTGCAGTTCGAGATTTTTTAAAAGTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAG
* * * *
20759758 ACATGATCCCTGTATTTTTGTTGCCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
259 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
20759823 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACGGGCAGCAAACC
324 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
20759888 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
389 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
20759953 AATATAAGGGCCAAGTACCAGCACCCATGGCACATCATGTACGCATACCCCCCGGCCCGCCCGAT
454 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCC-CCCGAT
* * * * *
20760018 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGACGCTCCGACGATGGTGCCCAGGTGAA
518 CGTCGG-ACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCC-CGCGAA
* *
20760083 GAAAAATGCGGCACCAGCACATGCCC-AGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTG
581 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
*
20760147 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
646 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
20760212 CCACGAAATGAGTGTGCGGGTGCTTAGCCGACCAGAGAGGCGGGATG
711 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
20760259 AGCTGAGCAG
Statistics
Matches: 3255, Mismatches: 144, Indels: 61
0.94 0.04 0.02
Matches are distributed among these distances:
887 6 0.00
888 880 0.27
889 657 0.20
890 610 0.19
891 98 0.03
892 11 0.00
893 420 0.13
894 243 0.07
895 66 0.02
896 104 0.03
897 79 0.02
898 3 0.00
900 3 0.00
901 6 0.00
904 1 0.00
905 68 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
CTTTTTGCAGTTCGAGATTTTTTAAAAGTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGT
CGGACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGCGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGT
CCCCCTTTACGTGCTGCCACAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGAGGGCGG
Found at i:20758392 original size:26 final size:26
Alignment explanation
Indices: 20758363--20758415 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20758353 CCGGTCCGAT
*
20758363 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20758389 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20758415 C
1 C
20758416 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20759285 original size:26 final size:26
Alignment explanation
Indices: 20759256--20759308 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20759246 CCAGTCCGAT
*
20759256 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20759282 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20759308 C
1 C
20759309 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20760185 original size:26 final size:26
Alignment explanation
Indices: 20760149--20760201 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20760139 CCGGTCTGAT
20760149 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20760175 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20760201 C
1 C
20760202 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20761270 original size:26 final size:26
Alignment explanation
Indices: 20761234--20761286 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20761224 CTGGTCTGAT
20761234 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20761260 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20761286 C
1 C
20761287 CTGAGTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20762171 original size:26 final size:26
Alignment explanation
Indices: 20762133--20762185 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20762123 CCCGTCCGAT
20762133 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
20762159 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20762185 C
1 C
20762186 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20764813 original size:26 final size:26
Alignment explanation
Indices: 20764784--20764836 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20764774 CCGGTCTGAT
*
20764784 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20764810 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20764836 C
1 C
20764837 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:20766502 original size:867 final size:871
Alignment explanation
Indices: 20760359--20771044 Score: 12528
Period size: 876 Copynumber: 12.1 Consensus size: 871
20760349 ACTCCGTATG
* ** * * * *
20760359 CTTAGACTGGAAATGAACTCCGTATGCCTGCGTTAACCCACGAAATGAACGTACGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * ** * * * * * **
20760424 CGGCTAGAGGGGTGGGATGAGCAA-CTCGACGATCGATCGGGTCACCCTTTGCTTGCTATCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGC-CGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
* * ** * * *
20760488 CTGCTGCCGCAACCCTCGGTCTGATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAACCG
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
20760553 ACAGATGAAACGAGCGGGAGGGCGAGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGC--G-GGGCG-GAGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
20760618 AGCCGTGGATCGATAAGGTAGTTGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
20760683 ATTTTTATGGCTTGTAAATTCGTACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
20760748 CGACTTGTTTTCCT-TTTTTCAGGATTTTTGAAACTTTTTGCGGTTTC--GATTTTTGTAAAATT
385 CGACTCGTTTT-CTATTTTTCATGATTTTTGAAACTTTTTGCGG-TTCGAGATTTTT-TAAAATT
* * *
20760810 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
447 TTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * * *
20760875 AAAAAATTTCAGCTAAAAACTCGAAGCGTGCAAGATTTTGTGACCATATGAAAAAAGTGTCCTCA
512 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
20760940 TTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
577 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
20761005 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCAATTGC
642 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
20761070 ACATCATCTGCGCAGACCCCCC-ACCCCCCGATCGCTGGAACCCCAATGTCGCCGGTCAGGTTCT
707 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
** * * * *
20761134 CCGACGATGCTTCGACGATGGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
772 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCC
*
20761199 AGCATGTGCTGCCACAACCCTCTATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
837 AGCATGTGCTGCCGCAA-CC-CTA----G---G-TC-----C---G---G---TCCG-AT
* * * * ** *
20761259 GCTTAGATTGGGAATGAACTCCGTATGCCTGAGTCAATCCACGAAACAAGCGTGTGGGTGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * *
20761324 CCAGCCAG-GGGGTGGGATGCGCAATCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
* * * ** * *
20761388 CTACTACCACAACCCTC-ATCCAGTCTGATCTTCA-ACTGGGAATGAACTTCGTATGCCTGAGCC
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTT-AGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
20761451 AACCGACAAAACGAGCGGGAGGGTGGGCGGGTGGGCACTATGTCGGTCAGAGAGACGGGATGCGC
194 AACCGACGAAACGAGC--G-GGG-CGGAGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* *
20761516 AAGCCGTGGATCGATAGAGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
20761581 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * *
20761646 ACGACTCATTTTCTATTTTTCAAGATTTTTCAAACTTTTTGTGGTTCGGGATTTTTTAAAA-TTT
384 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
*
20761710 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCACAA
449 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
20761775 AAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
20761840 TCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGAG
579 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
20761905 AGTTCTTGAGGTTTG-TGACGCATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
20761969 ACCATGTGCGCACACCCCTCGGCCCCCTCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTC
709 ATCATGTGCGCACACCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
20762034 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCA
773 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCA
* * * * *
20762099 GCATGTTCTGCCACAATCCTCGGTCCCGTCCGAT
838 GCATGTGCTGCCGCAACCCTAGGTCCGGTCCGAT
* * * * * * * *
20762133 CTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCCTA-A----G--TCAAC-CC--A---CGAA-ACGA-GC
* * * * * ** *
20762198 ATAAAACGAGCGTTCAGCCGGCCAAAGGGGCGGGATGTGCAAGGAGGGGATCAG-CTGGGTCCCC
51 GT---ACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCC
* * * ** ** * **
20762262 CTCTGCATGCTGCCGATCCTGTTGTCGTGACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAA
112 CTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAA
*
20762327 CTCCGTATGCCTAAGGCAACCGACGAAACAAGCGGGCAGGCGGGCGGGCGG-GCGGGTGAGCACT
177 CTCCGTATGCCTAAGCCAACCGACG--A-AA-C--G-A-GC--G-GGGCGGAG-GGG-G-GCACT
* *
20762391 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGTAC
228 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* **
20762456 ATCTTCATATTTCTACATGCCAATGCCATTTTTATAACTTGTAAATTCATACAATGGTCCCTTAA
293 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
20762521 GCCTTTACGTGAAGTTTCATGGCCAGACGACTCGTTTTCTATTTTTCACGA-TTTTAAAACTTTT
358 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * * *
20762585 TACGGTTCGAGATTTTTTTAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGAAGTGAT
423 TGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * *
20762650 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAGCTCGAAGGGTACAAGATTATGT
488 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
20762715 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
553 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
20762780 TCTCAAATGCTCTTTAAGGAGGTGTTAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
618 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
*
20762845 GGGCCAAGTACCAGCACCCTTCGCACATCATGTGCGCACACCCCCCGGCCCCCCTCGATCGCCGG
683 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCC-CGATCGCCGG
** * * *
20762910 AACCCCAATGTTGCCGGTCAGGTTCTCCGATGATTCTCC-AGTGATGGTGCCCCGACGAAGAAAA
746 AACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAA
* * * * * * *
20762974 ATGTGGCATCAGCACATGCCCGAGCCCAGTATGTGCTGTCACAACCCTCA-GTCCGATCCGAT
810 ATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-AGGTCCGGTCCGAT
* * *
20763036 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * ** * * * *
20763101 AGGCCAGAGGGGTGGGATGCGCAACCCGACGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * ** *
20763166 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGATTAAGCCAT
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
20763231 CCGAAGAAACGAGCGGGTGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGC--G-GGGC-GGAGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * ** ***
20763296 TCCGTGGATCAATAGGGTGGTAGGTCGATTTAGGTGCATCTTCATATTTCTATGTGCCAATGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
20763361 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAT-GCACGA
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGA
* * * *
20763425 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTCCGAGATTTTTTTAAA-TTTT
385 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* *
20763489 TC-AGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAA
450 TCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20763553 ACAAAATTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
514 A-AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
20763618 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAACGGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
20763683 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
20763748 CATCATGTGTGCACACCCCCTGACCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGTCGATCA
708 CATCATGTGCGCACA----C---CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
* *
20763813 GGTTCTCC------G----G-CGATGGTGCCTC-AGTGAAGAAAAATGCGA-ACCAGCACATGCC
766 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGACACCAGCACATGCC
** * * * * *
20763865 CGAAACCAGAATGTGCTGTCGCAACCCTCGGTCCAGTCGGAT
830 CGAGCCCAGCATGTGCTGCCGCAACCCTAGGTCCGGTCCGAT
* *
20763907 CTTCA-ACTGGGAATGAACTCCGTATGCCTAAGCCAACCCATGAAACGAGCGTACGGGCG--CAG
1 CTT-AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * * *
20763969 CCGGCCAGAGGGGCGGGTTGCGCAAGTCAGGGATCGATCGGGTCCCGCTCTGCTTGCTGCCAATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
** * **
20764034 CTGCTACTACAACTCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
20764099 ACCGATGAAACGAGCGGCTGGGCGG-GCGGGCGAGCACTACACCGGCCAGAGAGACAGGATGCGC
195 ACCGACGAAACGAGC-G--GGGCGGAG-GGG-G-GCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * * *
20764163 AAGCCGTGGATCGATAAGGTGGTAGGTGGCTTTACGCACATCTTCATATTTCTACGTGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* * *
20764228 CATTTTTGTGGCCTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
20764293 ACCACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTT
384 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
* ** *
20764358 TTCAAAAGGAGTTTTGATCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCATGCACAA
449 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20764423 AAAACA-TCAGCTAAAAAGTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
514 AAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
**
20764487 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGATGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
20764552 GAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCATTGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* **
20764617 CATCATGTGCGCACACCCCCTCGGCCCCCCCCGATCGCTGGAACCCCAATGCCGTTGGTCAGGTT
708 CATCATGTGCGCACACCCCC-CGG--CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
** ** ** * * *
20764682 CTCCGGCAATGCTCCGACGATGGCACCCCGGTGAGGAAAAATGCGGCACTAGCACATGCCCGAGC
770 CTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGC
*
20764747 CCAGCATGTGCTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
835 CCAGCATGTGCTGCCGCAACCCT-A-----G---G-TC-----C---G---G---TCCG-AT
* * * *
20764809 GCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * * *
20764874 CCAGCCAGAGGGGCGAGATGCGCATGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
*
20764939 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * ** *
20765004 ACTGATGAAAAGAACGGGCGGGCGAGCGGGCCGGCACTACGATGGCCAGAGAGACGGGATGCGTA
195 ACCGACGAAACGAGCGGG-GCG-GAG-GGG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ** *
20765069 AGCCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGTGCATCTTCATATTTTTGCATGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
20765134 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGCCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
20765199 CGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTTGGGATATTTTAAAATTTCT
385 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT-T
*
20765264 TCCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
449 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
20765328 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-AAAAGAAGTGTCCCCAT
514 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA-AAGTGTCCCCAT
*
20765392 TTCAGACACTTTAATAGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
20765456 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATAGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * * *
20765521 TATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGAAACCCCAATGTCGTCGATCAGGTTCTC
708 CATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** ** * * * *
20765586 CGACGATGCTCCGACGATGGTGCCCCGGGGAAGAGAAATGTGGCACCAGCACATGCCTGAGCCCA
773 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCA
* * *
20765651 GCATGTGCTGCCGCAACCCTAGGTTCGGTCCAAC
838 GCATGTGCTGCCGCAACCCTAGGTCCGGTCCGAT
* *
20765685 CTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATC-AGCGTACGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-CGAGCGTACGGGCGCTCAG
* ** * * *
20765749 CCAGCCAGAGGGGTAGGATGCGCAAGCTGGGGATCGG-CTGGGTCCCCCTTTATGTGCTGCCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGCCGAT
* * *
20765813 CCTGCTACCGCAACCATCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
20765878 AATCGACGAAACGAGC-GGGC-G-GGGGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCC
194 AACCGACGAAACGAGCGGGGCGGAGGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
20765940 ATAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATTCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
20766005 TTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCATCATGTGAAGTTTCATGGCCAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
20766070 TCGTTCTCTATTTTTCA-CATTTTTTGAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCG
389 TCGTTTTCTATTTTTCATGA-TTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
* * * *
20766134 GAAGGAGTTTTGGCCCCAAACTTTGTCGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACA
453 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
20766199 ATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
20766264 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-TTAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
20766328 CTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
20766393 TGTGTGCACACCCCCCGGCCCCCCGATAGTCGGAACCCCAATGCCGCCGATCATGTTTTCCGATG
713 TGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTG
* * * *
20766458 ATGCTCC-AGCGATGGTGCCCCGGCAAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCAT
778 ATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCAT
* * *
20766522 GTGCTGTCACAACCCTCA-GTCCGATCCGAT
842 GTGCTGCCGCAACCCT-AGGTCCGGTCCGAT
* * * * *
20766552 CTTAGACTGGGAATGAAGTCCGTATGCCTAACTCAACCCACGGAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * *
20766617 CGGCCAGAGGGGCGGGATGGGCAAGTCAGGGTTCGGTCGGGTCCCTCTCTACGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
20766682 TGCTACTGCAACCCTTGGT-TCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCGAAGCCA
131 TGCTACCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
20766746 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGATGAGATGCGCA
195 ACCGACGAAACGAGC-GG--GGC-GGAGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
20766811 AGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
20766876 ATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * * * *
20766941 CGACTCATTTTTTATTTTTCATGATTTTTGAAACTATTTACGGCTCGGGATTTTTTAAAGTTTTC
385 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * ** * *
20767006 TAGGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTCCATTTTTCTTGGCTTGCACAAA
450 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
20767070 AAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAGAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
20767135 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * **
20767200 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAATGGCAAAATACCAGCACCTTTCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
20767265 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCTAATGTCGCCGGTCAGGTTCTCC
710 TCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
20767330 GGCGATGCTCTGACGATGGTGCCCCGACGAAGAGAAATGC-ATCACCAGCACATGCCCGAGCCCA
774 GGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCA
*
20767394 GCATGTGCTACCGCAACCCTTGATCTGGTCTAATCTTAGACTGGGAATGAACTCCGTAT
838 GCATGTGCTGCCGCAACCC-T-A---GG-----TC-----C---G---G---TCCG-AT
* *
20767453 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGTGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
* * * * * *
20767518 CCGGCCAGAAGGGTGGGATGGGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACATGCTACAGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
* * * * * * *
20767583 CTACCATCGCAACCCTTGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGCATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
20767648 ACCGATGAAACGAGCGGGCGGGCGAGCGGGCGGGCACTACGCTGGCCATAGAGACGGGATGCATA
195 ACCGACGAAACGAGC--G-GGGCG-GAGGG-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ** ***
20767713 AGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGTGCATCTTCATATTTCTATTTGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
20767778 ATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAACA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
20767843 CGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTT
385 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * *
20767908 TCGAAAGGAGTTTTGGACCCAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAA
450 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
20767973 AAAATTTAGCCAAAAACTCGAAGTGTAC-A-A------GA-C----------A-------C-TTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
20768011 -----A---T--TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGCGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
20768066 GTTCTCAAGGTTTGATGACGGATACGGGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
20768131 TCATGTCCGCACACCGCCCGGCCCCCCCGGTCGCTGGAACCCTAATGCCACCGGTCAGGTTCTCC
710 TCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
20768196 GATGATGC-CACGACGATGGTGCCTCGACGAAGAAAAATGTCG-CACCAGCACATGCCCGAGCCC
774 GGTGATGCTC-CGACGATGGTGCCCCGACGAAGAAAAATG-CGACACCAGCACATGCCCGAGCCC
* *
20768259 AG-ATATGCTAG-CGCAACCCTCGGTCCGGTTTGATCTTAGATTGGGAATGAACTTCGTAT
837 AGCATGTGCT-GCCGCAACCCTAGGT-C--------C--------GG--T---C--CG-AT
** * * *
20768318 GCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCAACGAAACGAGCATAC-GGCCCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAG
** * * * * *
20768382 TTGGCCAGAGGGGCGGGATGCACAAGCTGGGGATAGGCCGGGTCCCCCTCTACGTGCTGCTGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATC
* * * *
20768447 CTACTACTGTAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
20768512 ACCGACGAAACGAGCGGGCGGGGGGGCGTGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
195 ACCGACGAAACGA----GC---GGGGCG-GAGGG-GGGCACTACGCCGGCCAGAGAGACGGGATG
*
20768577 TGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
251 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * *
20768642 TTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCATCACGTGAAGTTTCATGGC
316 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * *
20768707 AAGACGACTCGTTCTCTATTTTTCACG-TTTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAA
381 AAGACGACTCGTTTTCTATTTTTCATGATTTTT-GAAACTTTTTGCGGTTCGAGATTTTTTAAAA
* *
20768771 TTTTTTTGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
445 TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
20768836 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGAGACCC
510 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
20768901 CATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGG
575 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * *
20768966 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGAGCGAAGTACCAGCACCCATC
640 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * **
20769031 AG-ACATCATATGCGCACACCCCCCGACCCCGCTGATCGTCGG-ACCCCAATGCCATCGGTCAGG
705 -GCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * * * *
20769094 TTCTCCGGTGATGCTCCGATGATGGTGCCCCGACAAAAAAAAATAC-AGCACCAGGACATGCCCG
768 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCG
* * * *
20769158 AGCCCAGCATGTGCTACCGCAACCTTCGGTCCAGTCCGAT
832 AGCCCAGCATGTGCTGCCGCAACCCTAGGTCCGGTCCGAT
* *
20769198 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * ** *
20769263 CTGCCAGAGGGGCGGGATGCACAAGCCGGGGACCGGTCGAGTCCCTCTCTACGTGCTGCTAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * ** *
20769328 TGCTACCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
20769393 CCAACAAAATGAGCGAACGGGTGGACAGGCGGTCACTACGCTGGCTAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCG---GGGCGG--AGGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
20769458 GCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTCCACGCCAATGCCA
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
20769523 TTTTTATGGCTTGTAAATTCATATAAGGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * ** * * *
20769588 GACTCGTTATATATTTTTCAGGATTTTCAAAACTTTTTGCAGTTCCAAATTTTTTAAAATTTTTT
386 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* *
20769653 CGAAAGGATTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
451 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
20769718 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGACCCCATTTT
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
20769783 AGACACTTTAGTTGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * * *
20769848 TTCTCGAGGTTTGATGAGGGATAGGTGCCCAATATAAGAGCAAAGTACCAGCACCCATCACGCAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** *
20769913 CATGTGCGCACACCCCCCGGCCCCGCTTATCGCCGG-ACCCCAATGCCGTCGGTCAGGTTCTCCG
711 CATGTGCGCACACCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
20769977 GTGATGCTCCGATGATGGTGCCCCGACGAAAAAAAATGC-AGCATCAGCACATGCCCGAGCCCAA
775 GTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAG
* *
20770041 CATGTGCTGCCGCAACCCTCGGTCCGGTCTGAT
839 CATGTGCTGCCGCAACCCTAGGTCCGGTCCGAT
* *
20770074 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * *
20770139 CGGCCAAAGGGGTGGCATGCACAAGCTGGGGATCGATCGGGT--CCC-C--C-T-CTG-CG----
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
* * *
20770192 TGCTACCACAACCCTTGGTCTGGTCTGATCTTAGACTGGGAACGAACTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
20770257 CCGACGAAACGAGC-AGGC--A----GGC-C--CGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
196 CCGACGAAACGAGCGGGGCGGAGGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
20770312 GGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCCATTTCT
261 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
20770377 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
326 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** ** * *
20770442 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCAAGATTTTTTAAAATTTTTTCGGAA
391 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAA
* *
20770507 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCGTGTATTTTTTTTGGCATGCACAAAAAAA-T
456 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * **
20770571 CAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTGTCCATTTCAGACA
521 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
20770636 CTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCATATGCTATTTAAGGGGATGTGAGTTCTC
586 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
20770701 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGT
651 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *** * **
20770766 GCGCACACCCCCCCAGCCCCGCCGATCGCCAGAACCCCAATGCAATCGGTTAGGTTCTTTGGTGA
716 GCGCACA-CCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA
** * * *
20770831 TGCTCCGGTGATGGTGCCCCGACGAAAAAAAATGTGGCACCAGCACATGCCCGA-CCACAGCATG
779 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCC-CAGCATG
* * * * *
20770895 TGCTGCAGCAACCCTCGGTCTGATCTGAT
843 TGCTGCCGCAACCCTAGGTCCGGTCCGAT
* * * *
20770924 CTTAGACTGGGAATAAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGGGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
** *
20770989 CGGCCAGAGGGGCGGGATGCATAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGC
20771045 CAGTGCCATT
Statistics
Matches: 8522, Mismatches: 996, Indels: 578
0.84 0.10 0.06
Matches are distributed among these distances:
848 184 0.02
849 287 0.03
850 203 0.02
851 1 0.00
852 5 0.00
853 1 0.00
855 2 0.00
856 3 0.00
857 1 0.00
859 3 0.00
860 6 0.00
861 1 0.00
862 4 0.00
863 4 0.00
864 200 0.02
865 110 0.01
866 225 0.03
867 722 0.08
868 345 0.04
869 535 0.06
870 66 0.01
871 106 0.01
872 23 0.00
873 29 0.00
874 174 0.02
875 483 0.06
876 838 0.10
877 290 0.03
878 239 0.03
879 51 0.01
880 134 0.02
881 6 0.00
882 3 0.00
883 38 0.00
884 7 0.00
885 127 0.01
886 9 0.00
887 6 0.00
888 6 0.00
889 4 0.00
890 4 0.00
891 16 0.00
892 59 0.01
893 45 0.01
894 3 0.00
895 9 0.00
896 7 0.00
897 62 0.01
898 211 0.02
899 363 0.04
900 110 0.01
901 555 0.07
902 484 0.06
903 280 0.03
904 206 0.02
905 621 0.07
906 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (871 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGGCGGAGGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTAGGTCCGGTCCGAT
Found at i:20767464 original size:26 final size:26
Alignment explanation
Indices: 20767428--20767480 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20767418 CTGGTCTAAT
20767428 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20767454 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20767480 C
1 C
20767481 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20767675 original size:12 final size:12
Alignment explanation
Indices: 20767658--20767682 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
20767648 ACCGATGAAA
20767658 CGAGCGGGCGGG
1 CGAGCGGGCGGG
20767670 CGAGCGGGCGGG
1 CGAGCGGGCGGG
20767682 C
1 C
20767683 ACTACGCTGG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.28, G:0.64, T:0.00
Consensus pattern (12 bp):
CGAGCGGGCGGG
Found at i:20768329 original size:26 final size:26
Alignment explanation
Indices: 20768293--20768345 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20768283 CCGGTTTGAT
*
20768293 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
20768319 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
20768345 C
1 C
20768346 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.13, G:0.26, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:20772528 original size:26 final size:26
Alignment explanation
Indices: 20772499--20772551 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
20772489 CCGGTCTGAT
*
20772499 CTTACAC-GAGGAATGAACTCGGTATG
1 CTTACACTG-GGAATGAACTCCGTATG
*
20772525 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
20772551 C
1 C
20772552 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:20773291 original size:899 final size:895
Alignment explanation
Indices: 20771036--20773978 Score: 4109
Period size: 899 Copynumber: 3.3 Consensus size: 895
20771026 CGGGTCCCCC
* *
20771036 TCTGCGTGCCAGTGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTG
1 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * *
20771101 AAGTTTCATGGCCAGACGACTCATTTTCTATTTTTTACGATTTTCAAAACTTTTTACGGTTCGGG
66 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGG
* *
20771166 ATTTTTAAAAATTTTTTCGAAAGGAGTTTTGGCCCC-AACTTTGGTAGACATGATCCTTGTATTT
131 ATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTT
*
20771230 TTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCAAAGTGTACAAGATTTTTGTGACCATTTG
195 TTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAA-ATTTTTGTGACCATTTG
* *
20771295 AAAAAAGTGTCCCCATTTCAGACACGTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATG
259 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* **
20771360 CTCTTTAAGGGGGTGGGAGTTCTTGAGGTTTGATGAGGGATAACGGGCCAATATAAGGGCCAAGT
324 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
20771425 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCTCGGCCCCCTCGATTGCCGGAACCCCAA
389 ACAAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCCGATTGCCGGAACCCCAA
20771490 TGCCGTCGGTCAGGTTCTCCGACGATGCTCC-AGCGATGGTGCCCTCG-CGAAGAAAAATACGGC
452 TGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCC-CGACGAAGAAAAATAC-GC
* * * **
20771553 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTTGACTGG
514 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTACACTGG
20771618 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
579 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
20771683 CGTACGGGCGCTCAACCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGACCGAGTCCCCCTC
644 CGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCAGGGGATCGACCGGGTCCCCCTC
* * *
20771748 TACGTGCTACCGATCCTAATGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGCACTC
709 TACGTGCTACCGATCCTGATGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTC
* *** *
20771813 CGTATGCCTAAGCCAACCGACAAAATGAGCGGGCGGGAG-GGC-GGGCCCCGG---GAGAGACGG
774 CGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGAGTGGCACTACGCCGGCCAGAGAGACGG
20771873 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
839 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
20771930 TCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
1 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * * **
20771995 AAGTTTCATGGCCAGACGACTCGTTTTCTATTTTTTACAAATTTTTGAAACTTTTTGCATTTCAG
66 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC-GATTTTTAAAACTTTTTACGGTTCAG
* * *
20772060 GATTTTTGAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACTTGATCCTTGTATTT
130 GATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
20772125 TTTTTGGCTTGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGTCCATTTG
195 TTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAA-ATTTTTGTGACCATTTG
20772189 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG-AAAATCTCAAATG
259 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*** * * *
20772253 CTCTTTAAGCAAGTGTGAGTTCTTGATGTTTGATGAGGGATAGGGGGCCAACATAAGGGCGAAGT
324 CTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
20772318 ACCAA-CAACCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAACCCCAAT
389 A-CAAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATTGCCGGAACCCCAAT
* * * *
20772382 GTCATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATTCAGCACC
453 GCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAC-GCACC
* * * *
20772447 AGCACACGCCTGAGCCCAGCATGTGCTGTCGTAACCCTTGGTCCGGTCTGATCTTACAC-GAGGA
517 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTACACTG-GGA
* * *
20772511 ATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGTG
581 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * **
20772576 TGCGGGCACTTAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTA
646 TGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCAGGGGATCGACCGGGTCCCCCTCTA
* * * * *
20772641 CGTACTGCCGATCCTGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCG
711 CGTGCTACCGATCCTGATGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCG
* * *
20772706 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGATAGGCACTATGCCGGCCATAGAGACG
776 TATGCCTAAGCCAACCGACAAAACGAGCGGGCGGG-AG-T-GGCACTACGCCGGCCAGAGAGACG
* * *
20772771 GGATGCGTAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATATTCATATT
838 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
20772829 TCTGCATGCCAATGCCATTTATATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
1 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * ** *
20772894 AAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCACGATTTTTTAAACTTTTTGTGGTTCGGG
66 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGG
20772959 ATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
131 ATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * * * *
20773024 TGTTGGTATGCACAAAAAAAGTCAGCTAAAAACTGGAAGTGTACAACTTTTTGTGACCATTCGAA
196 TGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAATTTTTGTGACCATTTGAA
20773089 AATAA-TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
261 AA-AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
20773153 TCTTTAAGGGGGTGTGACTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
325 TCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* *
20773218 CAAGCACCCATCGCACATCATGCGGGCACACCCCCCGGCCCCCCCGATTGCCGGAACCCCAATGC
390 CAAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATTGCCGGAACCCCAATGC
* * * * * * *
20773283 CGTCGGTCAGGTTCTCCAACGATGCTCCGGCGATGGTGGCCCAACGAAGAAAAATGCGAAACTAG
455 CGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACG-CACCAG
*
20773348 CACTTGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAAACTGGGAATG
519 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT---T--G----G-TC-----C--GG--T-
*
20773413 AACTCCGTATGCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
564 --CT--G-AT-CTTACACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
20773478 TAAGTCAACCCACGAAACGAGCGTGCGGGCTCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGAAG
623 TAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCAG
* * * * * * *
20773543 GGGATTGACCGGGTCCCCCTCTGCATGCTACCAATCCTGTTGCCGCAACCCTCAGTCTGGTTCGA
688 GGGATCGACCGGGTCCCCCTCTACGTGCTACCGATCCTGATGCCGCAACCCTCGGTCTGGTCCGA
* * * * * *
20773608 TCTTAGACTGGGAATGAACTCCATATGCCTGAGCCAACCGACTAAACGAGCGGACGGGTG-GGCA
753 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGAGTGGCA
20773672 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
818 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
20773737 ACATCTTCATATT
883 ACATCTTCATATT
**
20773750 TCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
1 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
20773815 AAGTTTCATGGCAAGATGACTCGTTTT-TCA-TTTTCACGATTTTGAAAACTTTTTACGGTTCAA
66 AAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTCACGATTTTTAAAACTTTTTACGGTTCAG
* ** **
20773878 GATTTTTTAAAATTTTTTCGGAATTAGTTTTCTCCCCAAACTTGGTAGACGTGATCCTTGTATTT
130 GATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
20773943 TTGTTGGCATGCACAAAAACATTCAGCTAAAAACTC
195 TTGTTGGCATGCACAAAAATATTCAGCTAAAAACTC
20773979 AGCCGGCCAG
Statistics
Matches: 1812, Mismatches: 190, Indels: 68
0.88 0.09 0.03
Matches are distributed among these distances:
890 3 0.00
891 340 0.19
892 8 0.00
893 94 0.05
894 164 0.09
895 125 0.07
896 7 0.00
898 188 0.10
899 371 0.20
902 1 0.00
904 1 0.00
908 1 0.00
909 2 0.00
914 1 0.00
916 2 0.00
918 1 0.00
920 120 0.07
921 166 0.09
923 1 0.00
924 3 0.00
925 212 0.12
926 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGG
ATTTTTAAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTACAAATTTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
AAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATTGCCGGAACCCCAATGCC
GTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGCACCAGCA
CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCTGATCTTACACTGGGAATGAA
CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
GCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCAGGGGATCGACCGGGTCCCCCTCTACGTGC
TACCGATCCTGATGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
CTAAGCCAACCGACAAAACGAGCGGGCGGGAGTGGCACTACGCCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
Found at i:20773427 original size:26 final size:26
Alignment explanation
Indices: 20773398--20773476 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
20773388 CCGATCCGAT
20773398 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
20773424 CTTATACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
20773450 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
20773476 C
1 C
20773477 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:20774820 original size:26 final size:26
Alignment explanation
Indices: 20774784--20774835 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20774774 CGGTCCGATG
20774784 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
20774810 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
20774836 ATAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:20775758 original size:26 final size:26
Alignment explanation
Indices: 20775722--20775774 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20775712 CCGGTCCAAT
* * *
20775722 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
*
20775748 CTTAGACTGGGAACGATCTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
20775774 C
1 C
20775775 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:20778192 original size:712 final size:714
Alignment explanation
Indices: 20776789--20778234 Score: 2189
Period size: 712 Copynumber: 2.0 Consensus size: 714
20776779 AATCTTAAGT
* * * *
20776789 TGGGAATGAATTCCGTATGCCTAAGCCAACCGACGGAACGAGCGGACGGACGGGCGGGCACTACG
1 TGGGAATGAAATCCGTATGCCTAAGCCAACCGACGAAACGAACGGACAGACGGGCGGGCACTACG
* * * * *
20776854 TCGACCAGAGAGATGGGATGCGCAAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTAGGTACATC
66 TCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATC
* *
20776919 TTCATATTTCTCCATTCCAATGCCATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAGCC
131 TTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
20776984 TTCGCGTGAAGTTTCTTGGCGAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
196 TTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* ** * * ** * *
20777049 GGTTCGGGATTTTTTAAAATTTTTTTGAAAAGATTTTTGGCCGTAAACTTGGTAGATGTGATCCT
261 GATTCAAGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGACCCCAAACATGGTAGACGTGATCCT
* *
20777114 TGTACTTTTCTTGGCATGCATAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGAC
326 TCTACTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGAC
* *
20777179 AACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAGTAGCAGCAAACCTGTAAAATCT
391 AACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCT
*
20777244 CAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
456 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* ** *
20777309 TCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGGTCCCCCGATCGTAGGAAC
521 CCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGTAGAAAC
* * * * * *
20777374 TCCAACGCCGCCGATCAGGTTCTTCGGCGATGCTCCGATGATGGTGCCCCGATGAAGAAAAAGCG
586 CCCAACGCCGCCGATCAGGGTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAAGCG
*
20777439 GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGAC
651 GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGAA
* * * *
20777503 TGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAACGGGCAGACGGGCGGGCACTACG
1 TGGGAATGAAATCCGTATGCCTAAGCCAACCGACGAAACGAACGGACAGACGGGCGGGCACTACG
* *
20777568 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGCTGGGTTTAGGCACATC
66 TCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATC
* *
20777633 TTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
131 TTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
20777698 TTCACGTGAAGTTTCTTGGCAAGTCGACTCGTTTTCTA-TTTTCACGATTTTTGAAACTTTTTAC
196 TTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
* * *
20777762 GATTCAAGATTTTTTAAATTTTTTTTGGAAGGAGTTTTGACCCCAAACATGGTAGACGTGATCCT
261 GATTCAAGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGACCCCAAACATGGTAGACGTGATCCT
* * * * **
20777827 TCTATTTTTCTTGGCATGCACAAAAACATTCAGCTGAAAACTGGAAGTGTACAAGATTTTGTGAC
326 TCTACTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGAC
* * * * *
20777892 CA-TTTAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTATAAAATCT
391 AACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCT
*
20777956 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGG
456 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* *
20778021 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGAAAC
521 CCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGTAGAAAC
* * * *
20778085 CCCAATGCCGTCGGTCAGGGTCTCCGGCGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATGC
586 CCCAACGCCGCCGATCAGGGTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAA-GC
* * *
20778150 GGCACCAGCATATG-CTCGAGCCTAGCATGTGCTGCCGCAACCCTCTGTCCAGTCTGATCTTAGA
650 GGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGA
20778214 A
714 A
*
20778215 TGGGAATGAAATCTGTATGC
1 TGGGAATGAAATCCGTATGC
20778235 TTAGACTAGG
Statistics
Matches: 657, Mismatches: 73, Indels: 6
0.89 0.10 0.01
Matches are distributed among these distances:
711 77 0.12
712 232 0.35
713 136 0.21
714 212 0.32
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (714 bp):
TGGGAATGAAATCCGTATGCCTAAGCCAACCGACGAAACGAACGGACAGACGGGCGGGCACTACG
TCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATC
TTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
GATTCAAGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGACCCCAAACATGGTAGACGTGATCCT
TCTACTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGAC
AACTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCGGCCCCCCCGATCGTAGAAAC
CCCAACGCCGCCGATCAGGGTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAAGCG
GCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGAA
Found at i:20779136 original size:26 final size:26
Alignment explanation
Indices: 20779107--20779159 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20779097 CCGGTCCGAT
20779107 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20779133 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20779159 C
1 C
20779160 CTAAGCTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20779217 original size:899 final size:898
Alignment explanation
Indices: 20777476--20781099 Score: 4815
Period size: 899 Copynumber: 4.1 Consensus size: 898
20777466 GTGCTGCCGC
*
20777476 AACCCTCGGTC-CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
1 AACCCTCGGTCTGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
* * *
20777540 ATGAA-CGGGC--AGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
65 A-CAAGCGGGCGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
20777602 CGATAGGGTGGTTGCTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGG
129 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* *
20777667 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGTCGACTCGTTT
194 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
20777732 TCTA-TTTTCACGATTTTTGAAACTTTTTACGATTCAAGATTTTTTAAATTTTTTTTGGAAGGAG
259 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA-GAC
* * * * * *
20777796 TTTTGACCCCAAACATGGTAGACGTGATCCTTCTATTTTTCTTGGCATGCACAAAAACATTCAGC
323 TTTTG-GCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGC
* * *
20777861 TGAAAACTGGAAGTGTACAAGATTTTGTGACCATTT-AAAAAAGTTTCCCCATTTCAGACACTTT
387 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20777925 AATGGCTACTGGCAGCAAACTTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
452 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
20777990 TTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
517 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
20778055 ACACCCCCCGGCCCCCCCGATCG-TCGAAACCCCAATGCCGTCGGTCAGGGTCTCCGGCGATGCT
582 ACACCCCCCGGCCCCCCCGATCGCT-GGAACCTCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * * * * *
20778119 CCGGCGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCATATGCTCGAGCCTAGCATGTGCTG
646 CCGGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * * * * *
20778184 CCGCAACCCTCTGTCCAGTCTGATCTTAGAATGGGAATGAAATCTGTATGCTTAGACTAGGAATG
711 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * *
20778249 AACTCCATATGCCTAAGTCAACCCATGACAC-AAGCGTACGGGCACTCAGCCAGCCAGAGGGGCG
776 AACTCCGTATGCCTAAGTCAACCCATGAAACGAA-CGTACGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * *
20778313 GGATGCGCAAGTCGGGGATCGGTCGAGTCCCCCTCTACATGCTCTCAATCCTACTACAGT
840 GGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTACGTGCTCTCGATCCTGCT-CAGT
*
20778373 AACCCTCGGTCTGATCTGATCTTAGACTGGGAAAGAACTCCGTATGCCTAAGCCAACTGACGAAA
1 AACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA
* * *
20778438 CAAGCGGGC-GGG-CGGGCGGGCACTACGTCGGCCAGAGAGACGGGTTGCGCAAGCCGTGAATCG
66 CAAGCGGGCGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
*
20778501 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAGGGCT
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
* * *
20778566 TGTAAAATCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCCAGACGACTCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
20778631 TATTTTTCACTATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAACTT
261 TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG-ACTT
* *
20778696 TTGGCCCTAACCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
325 TTGGCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTA
*
20778761 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAA
389 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
20778826 TGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
454 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
20778891 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGAACCAGCACCCATCCCACATCATGTGCGTAG
519 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * *
20778956 ACCCCCCCGG-CCCCCCGATCGCTGGAACCTCAATGCCGCCGGTAAGGTTCTCCGACGATGCTCT
584 A-CCCCCCGGCCCCCCCGATCGCTGGAACCTCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
** * *
20779020 GGCGATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACAT-CCCTGAGCCCAGCATTTGCTGT
648 GGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCC-GAGCCCAGCATGTGCTGC
*
20779084 CGCAATCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
712 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * *
20779149 ACTCTGTATGCCTAAG-CTAAACCATGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGTGG
777 ACTCCGTATGCCTAAGTC-AACCCATGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGCGG
* *
20779213 GATGCGCAAGCCGGGGATCGGCCGAGTCCCGCTCTACGTGCTAC-CGATCCTGCTGCAGC
841 GATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTACGTGCT-CTCGATCCTGCT-CAGT
** *
20779272 AACCCTCTGACCCG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
1 AACCCTC-GGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
* *
20779336 ACGAGCAGGCGGGCGGGCCGACGGGCGAGG-ACTACGCCGGCTAGAGAGACAGGATGCGCAAGCC
65 AC-A--A-GCGGGCGGG--GACGGGCG-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
*
20779400 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
123 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
20779465 TTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
188 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
20779530 TCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-AG---------GA-TTTTT--G
253 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* *
20779582 --G-C------CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATATACAAAAAATTT
318 AAGACTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATT
* * * *
20779638 CAGCTAAAAAATCGAAGTATACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAAACA
383 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
20779703 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAACGGGGTGTGAGTTCTC
448 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
20779768 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG-ACCAGCACCCATCGCACATCATGT
513 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * * * *
20779832 GCGCACACCCCTCGGCCCCCCCGATGGCCGGAACC-CTAATGCAGTCGATCTGGTTCTACGGCGA
578 GCGCACACCCCCCGGCCCCCCCGATCGCTGGAACCTC-AATGCCGTCGGTCAGGTTCTCCGACGA
* *
20779896 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCAGCAGCACATGCCCGAGCCCAGCATGT
642 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
20779961 GCTGTCACAACCCTTGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGG
707 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * * **
20780026 AATGAACTCCGTATGCCTAATTCAACCCATGAAATGAGCGTACAGGCTCTCAAACGGCCAGAGGG
772 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGG
* * * * ***
20780091 GCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCGCTCTACGTGCTGTTGATCCTGCTGTTT
837 GCGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTACGTGCTCTCGATCCTGCTCAGT
* * * *
20780153 CAACCATCGGTCTGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 -AACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
* * *
20780218 ACGAGCGGGCAGGCGGACGGACGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
65 ACAAGCGGGC-GG-GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
20780283 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
128 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
* * * *
20780348 GCTTGTATATTCATACAATGGTCCCTTAAGCCTTTATGTGAAGTTTCATGGCGAGACGACTCGTT
193 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * * *
20780413 TTTTATTTTTCATGATTTTTGAAACATTTTACGG-T-GGGATTTTTTAAAATTTATTCGGAAGGC
258 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAC
* * * * *
20780476 ATTTTGGCCCCAAACCTGGTAGAGGTGATCCTTGT-TTTTTGTTGGCACACATAAAAAAATTCAT
323 -TTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAG
* * *
20780540 CTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAACAAGTGTCCCCCTTTCAGACACTT
386 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * *
20780605 TAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GAGGTGTGAGTTCTCGAG
451 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
20780669 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGTACCCATTGCACATCATGTGCG
516 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* ** * * *
20780734 CACACCCCCCGACCCCCTAGATCCCTGGAACCAT-AATGCCGACGGTCAGGTTCTCTGACGATGC
581 CACACCCCCCGGCCCCCCCGATCGCTGGAACC-TCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* ** *
20780798 TCCGGGGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCT
645 TCCGGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCT
* * ** * * *
20780863 GCCGCAACCCTTGGTCTGGTCTAAT-TCTAGACTGGGAATCAACTTCGTATGCTTAGACTGGAAA
710 GCCGCAACCCTCGGTCCGGTCCGATCT-TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
20780927 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCCA-AGGGG
774 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTACGGGCGCTCAGCCGG-CCAGAGGGG
* * ** * * * ** * * *
20780991 TGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCATTTGTGTGCTGTCGATCCTACTGC-CT
838 CGGGATGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTACGTGCTCTCGATCCTGCT-CAGT
* * * * *
20781052 CAACCCTCGATCCGGTCGGATCTTAGATTGGGAATGAACTCCGTATGC
1 -AACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGC
20781100 TTAGACTGGG
Statistics
Matches: 2411, Mismatches: 253, Indels: 124
0.86 0.09 0.04
Matches are distributed among these distances:
877 4 0.00
878 205 0.09
879 3 0.00
880 1 0.00
881 11 0.00
882 342 0.14
883 213 0.09
884 3 0.00
886 1 0.00
887 4 0.00
889 1 0.00
890 1 0.00
891 1 0.00
892 2 0.00
894 1 0.00
896 7 0.00
897 242 0.10
898 200 0.08
899 913 0.38
900 44 0.02
902 1 0.00
903 6 0.00
904 2 0.00
906 3 0.00
907 198 0.08
908 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
AACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA
CAAGCGGGCGGGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGACTTT
TGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCGGCCCCCCCGATCGCTGGAACCTCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGC
GATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
CGTATGCCTAAGTCAACCCATGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
GCAAGCCGGGGATCGGCCGAGTCCCCCTCTACGTGCTCTCGATCCTGCTCAGT
Found at i:20780018 original size:26 final size:26
Alignment explanation
Indices: 20779989--20780041 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20779979 CTGGTCCGAT
*
20779989 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20780015 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20780041 C
1 C
20780042 CTAATTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20780932 original size:26 final size:26
Alignment explanation
Indices: 20780890--20780940 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20780880 GGTCTAATTC
* *
20780890 TAGACTGGGAATCAACTTCGTATGCT
1 TAGACTGGAAATCAACTCCGTATGCT
*
20780916 TAGACTGGAAATGAACTCCGTATGC
1 TAGACTGGAAATCAACTCCGTATGC
20780941 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTGGAAATCAACTCCGTATGCT
Found at i:20781183 original size:185 final size:185
Alignment explanation
Indices: 20780890--20781284 Score: 503
Period size: 185 Copynumber: 2.1 Consensus size: 185
20780880 GGTCTAATTC
* *
20780890 TAGACTGGGAATCAACTTCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCAC
* *
20780955 GAAACGAGCGTACGGGCGCTCAGTCGGCCCAAGGGGTGGGATGCGCAAG-CTGGGGATCGATCGG
66 GAAACGAGCGTACGGGCGCTCAGCCGGCCCAAGGGGCGGGATGCGCAAGTC-GGGGATCGATCGG
* * *
20781019 GTCCCCATTTGTGTGCTGTCGATCCTACTGCCT-CAACCCTCGATCCGGTCG-GATCT
130 GTCCCCATCTGCGTGCTGTCGATCCTACTG-CTGCAACCATCGATCCGGT-GTGATCT
* * ** * *
20781075 TAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACTCAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
20781140 GAAACGAGCGTGCGGGCGTTTAGCCGG-CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTTGG
66 GAAACGAGCGTACGGGCGCTCAGCCGGCCCA-AGGGGCGGGATGCGCAAGTCGGGGATCGATCGG
* * * * *
20781204 GTCCCCCTCTGCGTTCTGTTGATCCTACTGCTGCAACCATCGGTCTGGTGTGATCT
130 GTCCCCATCTGCGTGCTGTCGATCCTACTGCTGCAACCATCGATCCGGTGTGATCT
20781260 TCA-ACTGGGAATGAACTCCGTATGC
1 T-AGACTGGGAATGAACTCCGTATGC
20781285 CTAAGCCAAC
Statistics
Matches: 181, Mismatches: 24, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
184 6 0.03
185 173 0.96
186 2 0.01
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (185 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTACGGGCGCTCAGCCGGCCCAAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGG
TCCCCATCTGCGTGCTGTCGATCCTACTGCTGCAACCATCGATCCGGTGTGATCT
Found at i:20781692 original size:26 final size:26
Alignment explanation
Indices: 20781654--20781703 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
20781644 TCTGGTCGAT
*
20781654 CTTACACTAGGAATGAACTTCGTATG
1 CTTACACTAGGAATGAACTCCGTATG
* *
20781680 CTTAGACTGGGAATGAACTCCGTA
1 CTTACACTAGGAATGAACTCCGTA
20781704 AGCCTAAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGTATG
Found at i:20783441 original size:26 final size:26
Alignment explanation
Indices: 20783412--20783464 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20783402 CCAGTCCAAT
*
20783412 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
20783438 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20783464 C
1 C
20783465 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20783877 original size:891 final size:887
Alignment explanation
Indices: 20781420--20789538 Score: 8872
Period size: 872 Copynumber: 9.2 Consensus size: 887
20781410 ACTTGCCAAT
*
20781420 GGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
1 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * ** *
20781485 CATCACACATCATGTGCGCACA-CCCCCGACCCCCCGATCGTTGGAACCCCAATGCCGCCGTTCA
66 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
** *
20781549 GGTTCTCCGATGATGCTTCGGCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCT
131 GGTTCTCC----A-------GCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCC
* * * * * * ** * * * *
20781614 GAGCCTAGCATATACTGCCGCAACCCTCGATCTGGT-CGATCTTACACTAGGAATGAACTTCGTA
185 GAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCAGTCCAATCTTAGACT-GGAATGAA-TCCATA
* * * *
20781678 TGCTTAGACTGGGAATGAACTCCGTAAGCCTAAGTCAACTCACGAAACGAGC-TGCGGGCGGTCA
248 TGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCA
* *** * * ** ** ** *** ** ** * *
20781742 G---GTTCTCTGGCG-ATGG-TTC-CCCGTTGATGAAAAATGCA-GCACCAGCACATGCCCGAGC
312 GCCAG-CCAGAGGGGCA-GGATGCGCAAGCCGGGGATCGAT-CAGGGTCCCCCTC-TG--CGTGC
* ** ** * * ** * *
20781800 --CCAGCAT-GTGTTACCACAACCCTCGGTCTGGTCTGATCTTAGATTAGGAATGAACTCCGTAT
371 TGCC-G-ATCCTACTACTGCAACCCTCGGCCTGATCCAATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
20781862 GCCTAAGCCAACCGATGAATCGAGAGGGCGGGCGGGC-GGAGGGTACTATGTCGGCCAGAAAGAC
434 GCCTAAGCCAACCGACGAAACGAGA--GCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGAC
** * *
20781926 GGGATAAGCAAGCCGCGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
497 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCG
* * *
20781991 TGCCAATGCCCTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACCTGAAGTTT
562 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
20782056 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCCGTTCGAGATTTTT
627 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTT
* * * * * *
20782121 TAAAA-TTTTTCGAAAGGATTTTTGGCCCC-AACTTGGTAGGCGTGATCCTTGTATTTTTTTTGT
692 TAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
*
20782184 CATGCGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
757 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
*
20782249 GTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
822 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
20782314 G
887 G
* *
20782315 GGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACC
1 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* *
20782380 CATCGCACATCATGTGCGCACACCACCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTC
66 CATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* *
20782445 AGGTTCTCCGATGACGCTCCAGCGATGGTGCCCTGACGAAGAAAAATACGACA-CAGCACATGCC
130 AGG---T----T----CTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCC
* * * *
20782509 GGAGCCCAGGATGTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGG---G-----A-AT
184 CGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCAGTCCAATCTTAGACTGGAATGAATCCATAT
* *
20782565 G---A-AC-----T---CT--GTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGTTCAGC
249 GCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * * *
20782616 CGGCTAGAGGGGCGGGTTGCGTAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTACCGATC
314 CAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGATC
* * * ** * * * * *
20782680 CTATTATTGCAACCCTTGATCTGGTCCGATCTTAAACTGAGAATGAACTCCGTATGCCTAAGGCA
379 CTACTACTGCAACCCTCGGCCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * ** * * * *
20782745 ACCGACAAAATGAGTGC--GCGAGTGGGCGGGCACTACACCGGCTAAAGAGACGAGATGCACAAG
444 ACCGACGAAACGAGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* ** **
20782808 CCGTGGATCGATAGGATGGTAGGCAGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
509 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
*
20782873 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACG
574 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
20782938 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTT
639 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTT
* *
20783003 AGAAGGAGTTTTGGCCCCAAA-TGTGGCAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
704 GGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* **
20783067 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTGG
768 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
20783132 AGAAACTTTAATTGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAG
833 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * * * *
20783187 GGGGTGTGAGTTCTCAAGGTTTGATTAAGGATAGAGGCCCAATATAAGGGCCAGGTACCAGCACC
1 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * ** **
20783252 CATCACACATCATGTGCACACACCCCCCGGCCCCCCGATCGTTGGAACCCCAATGTTGCCGGTCA
66 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
** *
20783317 GGTTCTCCAGCGATGGTGCCCCGACGAAGAAAAATTTGACACCAGCACATGCCGGAGCCCAGCAT
131 GGTTCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCAT
*
20783382 GTGCTGCCGTAACCCTTGATCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTA
196 GTGCTGCCGTAACCCTTGGTCCAGTCCAATCTTAGACT-GGAATGAA-TCCATATGCTTAGACT-
* * * *
20783447 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGGGCTCAGCCAGCCAGAG
258 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCAGAG
* * * *
20783512 GGGCAGGATGCGTAAGCCGAGGATCGATC-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACTG
323 GGGCAGGATGCGCAAGCCGGGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTG
* *
20783576 CAACCCTCGGCCTGATCCAATCTTGGACTGGGAATGACCTCCGTATGCCTAAGCCAACCGACGAA
388 CAACCCTCGGCCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * **
20783641 ACGAGCTAGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGTTCAAGCCGTGGA
453 ACGAG--AGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
20783706 TCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATCCCAATGCCATTTTTATG
516 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
*
20783771 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTT
581 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
20783836 TTCTATTTTTGATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGAAAAGA
646 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA
* * * * * *
20783901 TTTTTTGCCCCAAACTTGGTAGGCCTGATCCTTGTATTTTTTTTCGCATGCACAAAAAAATTCAG
711 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
20783966 CTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
776 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
20784031 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAA
841 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
***** * * * * * ** * *** *
20784078 GGGGTGTGAGTTCTC-AGCACCCAT--CGCACA----TCC--TGTGTGTG-C-ACCCCCCG-ACC
1 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* ** * **** ** * * ** * * *
20784131 C--C-C-C-TGAT-CAC-CAGAACCCAAATG-CCATCGGT--CAGGTTCTCCGAT---GAC-G-C
66 CATCGCACATCATGTGCGCA-CACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * * * * *
20784181 ----TC-CGA-CGATGGTGCCTCGGCAAAGAAAAATGTGACACCAGCACATGCCGGAGCCCAGCA
130 AGGTTCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
20784240 TGTGCTGCCGTAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACT
195 TGTGCTGCCGTAACCCTTGGTCCAGTCCAATCTTAGACT-GGAATGAA-TCCATATGCTTAGACT
* * *
20784305 GGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGTTCAG-CAGGCCAG
258 -GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCA-GCCAG
* * * * *
20784369 AGGGGCAAGATGCGCCAGCCGGGGATCG-GCAGCGTCCCCCTCTGCATGCTGCCGATCCTACTAC
321 AGGGGCAGGATGCGCAAGCCGGGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGATCCTACTAC
* * * * * *
20784433 CGCATCCCTCAGTCTGGTCCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACG
386 TGCAACCCTCGGCCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
20784498 AAA--TGAGCGGGCGGACGGGTGGGCACTACGCCGG-CATGAGAGACGGGATGCGCAAGTCGTGG
451 AAACGAGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCA-GAGAGACGGGATGCGCAAGCCGTGG
* ** * * *
20784560 ATCAATAGGGTGGTAGGCAGGTTTAGGCACATCTTCATATTTTTGTGTGCCAGTGCCATTTTTAT
515 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
*
20784625 GGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
580 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
20784690 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTCTTTT-AAATTTTTTCGGAAG
645 TTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT-TTTTAAAATTTTTTTGGAAG
* * * * *
20784754 AAGGTTTGGCCCAAAACATGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTC
709 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * *
20784819 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCAATTTCAAACAC
774 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
20784884 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
839 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
*
20784933 GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
1 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * *
20784998 CATCGCATATTATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
66 CATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * * * * * * *
20785063 AGGTTCTCCGGCGATGGTGCCCTGGCGAAGAAAAATGTGGCACCAACACTTGCCCGAGCCTAGCA
130 AGGTTCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
* * *
20785128 TGTGCTGCCGCAA-CC-T--T-C-G----------GTCT-G---G--TCC-GAT-CTTAGACTGT
195 TGTGCTGCCGTAACCCTTGGTCCAGTCCAATCTTAGACTGGAATGAATCCATATGCTTAGACTG-
* * *
20785169 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCAGGCGTTCAGCAAGCCAGAGG
259 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCAGAGG
* * * * * *
20785234 GGCAGGAGGCGCAAGCCGAGGATCG-GCAGGGTCCCCCTCTGTGTGCTGCCGATCCTACTGCCGC
324 GGCAGGATGCGCAAGCCGGGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGC
* * * *
20785298 AACCCTCAGTCC-GATCCGATTTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
389 AACCCTC-GGCCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * * *
20785362 AC--GAGCGGGCGGACGGGTGGGTACTACGTCGGCTAGAGAGACAGGATGCGCAAGCCGTGGATC
453 ACGAGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* *** * * *
20785425 AATAGGGTGGTAGGCAAGTTTAGGCACATCTTCCTATTTCTGTGTGCCAGTGCCATTTTTATGGC
518 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
*
20785490 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCGTTTT
583 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
20785555 CTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAAATTTTTTGGAAGAAG-
648 CTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGT
* * * **
20785619 TTTGGCCCAAAACTTGGTAGATGTGATCCTTTTATTTTTGTTGGCATGTGCAAAAAAATTCAGCT
713 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * * *
20785684 AAAAACTTGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCAATTTCAAACACTTTA
778 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
20785749 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
843 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
20785794 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
1 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* *
20785859 CATCCCACATCATGTGCG--CACCCCCCGGCCCCCTGATCGCCGGAACCCCAATGCCGCCGGTCA
66 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
* ** * *
20785922 GGTTCTCCGACGACGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTAACACCAGCACATGTCG
131 GGTTCT-C--C-A------G-CGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCC
** * *
20785987 GAGCCCAGCATGTGCTATCGTAACCCTTGGTCCAATCCAATCTTAGACTGGGAATGAACCCCATA
185 GAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCAGTCCAATCTTAGACT-GGAATGAA-TCCATA
* * *
20786052 TGCTTAGACTGG---G-A------A--CC-AAGTCAACCCACAAAACGAGCGTGCAGGTGTTCAG
248 TGCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAG
* * * * *
20786104 -CAGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCG-GCTGGGTCCCCCTCTGCATGCTGTCGA
313 CCA-GCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGA
* ** * * * * * *
20786167 TCCTGCTGTTGCAACCATTGG-TTCAGT-CAGATCTTAGACTAGGAATGAACTCTGTATGCCTAA
377 TCCTACTACTGCAACCCTCGGCCTGA-TCCA-ATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * *
20786230 GCCAACCAACGAAACGAGCGAGCGGGTGGGTGGGCGGGCACTACGTCAGCCAGAGAGACGGGATG
440 GCCAACCGACGAAACGA--GAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* *
20786295 CGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
503 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
* *
20786360 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTATGTGAAGTTTCATGGC
568 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
20786425 AAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-TGTTTTACGGTACGGGATTTTTTAAAA
633 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT-TTTTGCGGTTCGGGATTTTTTAAAA
* * * *
20786489 TTTATTCGGAAGGCA-TTTTGGCCCCAAACTTGGTAGAGGTGGTCCTTGT-TTTTTGTTGGCATG
697 TTTTTTTGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
20786552 CACAAAAAAATTCATCTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAACAAGTGTCC
761 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
20786617 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAA
826 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * *
20786679 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGTAAC
1 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * **
20786744 CATCGCACATTATGTGCGGACACCCCCCTGGCCCCCCTGATCGCCAGAACCCCATTGCCGCTAGT
66 CATCGCACATCATGTGCGCACACCCCCC-GGCCCCCC-GATCGCCGGAACCCCAATGCCGCCGGT
* *
20786809 CAGGTTCTCCAGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCTCATGC
129 CAGGTTCT-C--C-A-------GCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGC
* * * ** ** *
20786874 CTGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCTGGTTGAATCTTAGACTAGGAATGAACTCCG
183 CCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCAGTCCAATCTTAGACT-GGAATGAA-TCCA
* ** * * *
20786939 TGTGCTTAGACTAGGAATGAACTTAGTATGCCTAAGTCAACCAACGAAACAAGCGTGCAGGTGCT
246 TATGCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCT
* * * * * * * *
20787004 CAGCCGGCCAGAGGGGCGGGATGCGCTAGCCGGGGATC-AGTC-GGGTCTCTCTTTACGTGCTAC
310 CAGCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA-TCAGGGTCCCCCTCTGCGTGCTGC
* * * * * * * *
20787067 CGATCATGCTGCCGCAACCCTCAGTCC-GGT-CGATCTTAGACTGGGAATGAACTCCATATGCCT
374 CGATCCTACTACTGCAACCCTC-GGCCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
20787130 AGGCCAACTGATGAAAC--GATCGGGCGGGCAGGCAGGCACTACGTCGGCCAGAGAGACGGGATG
438 AAGCCAACCGACGAAACGAGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
* *
20787193 CGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGGTGCCAA
503 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
*
20787258 TGCCATTTTTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
568 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
20787323 AAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAAT
633 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAAT
*
20787388 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
698 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
20787453 CAAAAAAATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCC
763 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
20787518 ATTTCAAACACTTTAATGCCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAA-
828 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
20787577 GGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCATGTACCAGCACC
1 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* *
20787642 CATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCCAGAACCCCAAT----AC---C
66 CATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * * *
20787700 --G-TCT-GA-CGATGGTGCCCCGACGAGGAAAAATGCGGCACCAGCAGATGCCCGAGCCCAGCA
130 AGGTTCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
* * * * * *
20787760 TATGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATTCTTAGACT
195 TGTGCTGCCGTAACCCTTGGTCCAGTCCAATCTTAGACT-GGAATGAA-TCCATATGCTTAGACT
* * * * ** *
20787825 GGGAATTAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTTAGCTGGCTAGA
258 -GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCAGA
* * * * * *
20787890 GGGGCGGGATGCGCAAGCCGGGGATCGATC-GAGTCCCCCTCTGCATGCCGTCGATCCTACT-GT
322 GGGGCAGGATGCGCAAGCCGGGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACT
* **** * *
20787953 CGTAACCCTCAATTTG-GCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
387 -GCAACCCTCGGCCTGATCC-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
20788017 GAAACGAGCGGGCGGGCGGGCGTGCGGGCACTACGCCGGCCACAGAGACGGGATACGCAAGCCGT
450 GAAACGA--GAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
*
20788082 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
513 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
**
20788147 ATGGGGTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
578 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** * * * *
20788212 ATTTTCTATTTTTCACGATTTTCAAAACTTTTTGAGGTTCAGGATTTTTTAAAATCTTTTCGGAA
643 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAA
* * **
20788277 GGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTCTGTTGGCATGTTCAAAAAAATT
708 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
20788342 CAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAGACA
773 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
20788407 CTTTAATGTCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAG
838 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
20788457 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCC
1 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
** * * * * *
20788522 CATCATACATCATGTGCGCATAGCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGATC
66 CATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTC
* * * *
20788587 AGGTTCTCCGGCAATACTCTGACGATCGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCC
130 AGGTTCT-C--C---A----G-CGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCC
* * * *
20788652 CGAGCCCAGTATGTGCTACCGCAACCCTT-G----G--------T---CT-G---G--TCC-GAT
184 CGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCAGTCCAATCTTAGACTGGAATGAATCCATAT
* *
20788694 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTAC-GAGCGCTCA
249 GCTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG-GCGCTCA
* * * * * * * * *
20788757 GTCGGCTAGGGGGGCGGGATACGCAAGCCGAGGATCGA-CGGGGTCCCCCTCTGCGTGCTGTCGA
312 GCCAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGA
* * * * * * * *
20788821 TCCTACTACTGCAGGCCTTAGTCC-AATCTAATCTTAGATTGGGAATGAACTCTGTATGCCTAAG
377 TCCTACTACTGCA-ACCCTCGGCCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * **
20788885 CCAACCGACGAAAC--GAGCGGGCGGGCGTGCAGGCACTACGTCGGCCAGAGAGACGGGAAACGC
441 CCAACCGACGAAACGAGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * *
20788948 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCATTAC
506 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* * * *
20789013 CATTTTTATGTCTCGTAAACTCATACAATGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAG
571 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
20789078 ACGACTC-TTTTCTATTTTTCATGATTTTCGAAACTTTTTGCAGCTCGAGATTTTTTAAAATTTT
636 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * *
20789142 TTCGAAAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTACAA
701 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
20789207 AAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
766 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
20789272 TCAGACACTTTAATGGCTAGTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
831 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* *
20789329 GGGGTGTTAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
1 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * *
20789394 CATCGCACATCATTTGCACACACCCCCCCGGGCCCCCCGATCGCCGGAACCCCAATGCCACCGAT
66 CATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT
* * * *
20789459 CAGGTTCTCCTACGATGCTCCGGCGGTGGTGCGCCGATGAAGAAAAATGCGGCACCAGCACATGC
129 CAGGTTCT-C--C-A-------GCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGC
20789524 CCGAGCCCAGCATGT
183 CCGAGCCCAGCATGT
20789539 ACTGTCACAA
Statistics
Matches: 6202, Mismatches: 796, Indels: 474
0.83 0.11 0.06
Matches are distributed among these distances:
854 2 0.00
855 397 0.06
856 8 0.00
857 1 0.00
858 45 0.01
859 293 0.05
860 36 0.01
861 314 0.05
862 417 0.07
863 5 0.00
864 8 0.00
865 3 0.00
866 5 0.00
867 7 0.00
868 2 0.00
869 59 0.01
870 211 0.03
871 91 0.01
872 568 0.09
873 345 0.06
874 233 0.04
875 62 0.01
876 11 0.00
877 174 0.03
878 7 0.00
879 407 0.07
880 111 0.02
881 145 0.02
882 13 0.00
883 2 0.00
884 6 0.00
885 438 0.07
886 36 0.01
887 178 0.03
888 69 0.01
889 138 0.02
890 14 0.00
891 400 0.06
892 1 0.00
893 4 0.00
894 4 0.00
895 92 0.01
896 42 0.01
897 97 0.02
898 351 0.06
899 139 0.02
900 2 0.00
902 44 0.01
903 156 0.03
904 5 0.00
908 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA
GGTTCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGTAACCCTTGGTCCAGTCCAATCTTAGACTGGAATGAATCCATATGCTTAGACTGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCAGCCAGAGGGG
CAGGATGCGCAAGCCGGGGATCGATCAGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAA
CCCTCGGCCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
AGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
Found at i:20785500 original size:862 final size:862
Alignment explanation
Indices: 20784297--20789615 Score: 6405
Period size: 862 Copynumber: 6.1 Consensus size: 862
20784287 ACTCCATATG
* *
20784297 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCAGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAGC
* * *
20784362 AGGCCAGAGGGGCAAGATGCGCCAGCCGGGGATCGGCAGCGTCCCCCTCTGCATGCTGCCGATCC
66 AGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGC-GGGTCCCCCTCTGCATGCTGCCGATCC
* * * * *
20784427 TACTACCGCATCCCTCAGTCTGGTCCAATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
130 TACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20784492 CCGACGAAATGAGCGGGCGGACGGGTGGGCACTACGCCGG-CATGAGAGACGGGATGCGCAAGTC
195 CCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGTCGGCCA-GAGAGACGGGATGCGCAAGCC
* ** * * *
20784556 GTGGATCAATAGGGTGGTAGGCAGGTTTAGGCACATCTTCATATTTTTGTGTGCCAGTGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
20784621 TTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
20784686 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTCTTTT-AAATTTTTTCG
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATT-TTTTAAAATTTTTTCG
* * * *
20784750 GAAGAAGGTTTGGCCCAAAACATGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAA
453 GAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
20784815 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCAATTTCAA
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAA
20784880 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
20784945 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATTA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
*
20785010 TGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
713 TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * * * * *
20785075 GATGGTGCCCTGGCGAAGAAAAATGTGGCACCAACACTTGCCCGAGCCTAGCATGTGCTGCCGCA
778 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
20785140 A-CCTTCGGTCTGGTCCGAT
843 ACCCTTCGGTCTGGTCCGAT
* *
20785159 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCAGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAGC
* * * **
20785224 AAGCCAGAGGGGCAGGAGGCGCAAGCCGAGGATCGGCAGGGTCCCCCTCTGTGTGCTGCCGATCC
66 AGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGC-GGGTCCCCCTCTGCATGCTGCCGATCC
*
20785289 TACTGCCGCAACCCTCAGTCCGATCCGATTTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
130 TACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20785354 CCGACGAAACGAGCGGGCGGACGGGTGGGTACTACGTCGGCTAGAGAGACAGGATGCGCAAGCCG
195 CCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *** * * *
20785419 TGGATCAATAGGGTGGTAGGCAAGTTTAGGCACATCTTCCTATTTCTGTGTGCCAGTGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
*
20785484 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
20785549 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAAATTTTTT-GG
390 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTT-AAAATTTTTTCGG
* * * **
20785613 AAGAAG-TTTGGCCCAAAACTTGGTAGATGTGATCCTTTTATTTTTGTTGGCATGTGCAAAAAAA
454 AAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
20785677 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCAATTTCAAA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAAA
20785742 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
20785807 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
*
20785872 GTGCG--CACCCCCCGG-CCCCCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
714 GTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT----C-
* *** * *
20785934 ACGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTAACACCAGCACATGTCGGAGCCCAGCATG
774 -CG----G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
** * *** *
20785999 TGCTATCGTAACCCTT-GGTCCAATCCAAT
833 TGCTGCCGCAACCCTTCGGTCTGGTCCGAT
* * *
20786028 CTTAGACTGGGAATGAACCCCATATGCTTAGACTGGGAACCAAGTCAACCCACAAAACGAGCGTG
1 CTTAGACTGGGAATGAACTCCGTATGC-----CT-------AAGTCAACCCACGAAACGAGCGTG
* *
20786093 CAGGTGTTCAGCAGGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCCTCTGCA
54 CAGGCGTTCAGCAGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGC-GGGTCCCCCTCTGCA
* * ** * ** * * *
20786158 TGCTGTCGATCCTGCTGTTGCAACCATTGGTTC-AGTCAGATCTTAGACT-AGGAATGAACTCTG
118 TGCTGCCGATCCTACTGCCGCAACCCTCAGTCCGA-TCCGATCTTAGACTGA-GAATGAACTCCG
* * * *
20786221 TATGCCTAAGCCAACCAACGAAACGAGCGAGCGGGTGGGTGGGCGGGCACTACGTCAGCCAGAGA
181 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGT----GGGCACTACGTCGGCCAGAGA
*
20786286 GACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
242 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
20786351 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTATGTGAAG
307 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * *
20786416 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-TGTTTTACGGTACGGGAT
372 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT-TTTTGCAGTTCGGGAT
* * * *
20786480 TTTTTAAAATTTATTCGGAAGGCA-TTTTGGCCCCAAACTTGGTAGAGGTGGTCCTTGT-TTTTT
436 TTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTT
* *
20786543 GTTGGCATGCACAAAAAAATTCATCTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
500 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * * *
20786608 CAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTC
565 AAAGTGTCCCAATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* *
20786673 TTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACC
630 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * * * * *
20786738 AGTAACCATCGCACATTATGTGCGGACACCCCCCTGGCCCCCCTGATCGCCAGAACCCCATTGCC
695 AGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGCCGGAACCCCAATGCC
* *
20786803 GCTAGTCAGGTTCTCCAGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
759 GC----C-GG---T-CAG-G-TTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * *
20786868 TCATGCCTGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCTGGTTGAATCTTAGACTAGGAATGA
813 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT---TC--G--G-----T---CT--G---G-
*
20786933 ACTCCGTGT
857 --TCCG-AT
* ** * * * *
20786942 GCTTAGACTAGGAATGAACTTAGTATGCCTAAGTCAACCAACGAAACAAGCGTGCAGGTGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAG
* * * * * * * * * *
20787007 CCGGCCAGAGGGGCGGGATGCGCTAGCCGGGGATCAGTCGGGTCTCTCTTTACGTGCTACCGATC
65 CAGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC-GGCGGGTCCCCCTCTGCATGCTGCCGATC
* * * * * *
20787072 ATGCTGCCGCAACCCTCAGTCCGGT-CGATCTTAGACTGGGAATGAACTCCATATGCCTAGGCCA
129 CTACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCA
* * * * ** *
20787136 ACTGATGAAACGATCGGGCGGGCAGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCT
194 ACCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
*
20787201 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGGTGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
20787266 TTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
20787331 TTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTTGG
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGG
* *
20787396 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
454 AAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
20787461 TTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAAA
519 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAAA
* *
20787526 CACTTTAATGCCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC
584 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
20787590 TCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCAT
649 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
20787655 GTGCGCACACCCCCCCGG-CCCCCCGATCGCCAGAACCCCAAT----AC---C--G-TCT--GAC
714 GTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * *
20787707 GATGGTGCCCCGACGAGGAAAAATGCGGCACCAGCAGATGCCCGAGCCCAGCATATGCTGCCGCA
778 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* *
20787772 ACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATT
843 A-CC-C--T----T-CG------GTCT--G---G---TCC-GA-T
* * *
20787817 CTTAGACTGGGAATTAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTT-AG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCG-TTCAG
* * * * * * *
20787881 CTGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGTCCCCCTCTGCATGCCGTCGATC
65 CAGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG-GCGGGTCCCCCTCTGCATGCTGCCGATC
* * * ** * *
20787946 CTACTGTCGTAACCCTCAATTTG-GCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTACTGCCGCAACCCTCAGTCCGATCC-GATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCC
* * *
20788010 AACCGACGAAACGAGCGGGCGGGCGGGCGTGCGGGCACTACGCCGGCCACAGAGACGGGATACGC
193 AACCGACGAAACGAGCGGGCGGGC-GG-GT--GGGCACTACGTCGGCCAGAGAGACGGGATGCGC
*
20788075 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
**
20788140 CATTTTTATGGGGTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** * *
20788205 ACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTG-AGGTTCAGGATTTTTTAAAATCT
384 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCA-GTTCGGGATTTTTTAAAATTT
* * **
20788269 TTTCGGAAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTCTGTTGGCATGTTCA
448 TTTCGGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
20788334 AAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAA
513 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCAA
* * *
20788399 -TTCAGACACTTTAATGTCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
577 TTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * **
20788463 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCAT
642 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
20788528 ACATCATGTGCGCATAGCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGATCAGGTTC
707 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
20788593 TCCGGCAATACTCTGACGATCGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAGCC
772 TCC-G---------G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* *
20788658 CAGTATGTGCTACCGCAACCCTT-GGTCTGGTCCGAT
826 CAGCATGTGCTGCCGCAACCCTTCGGTCTGGTCCGAT
* * *
20788694 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTAC-GAGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG-GCGTTCAG
* * * * * * * *
20788758 TC-GGCTAGGGGGGCGGGATACGCAAGCCGAGGATCGACGGGGTCCCCCTCTGCGTGCTGTCGAT
65 -CAGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGC-GGGTCCCCCTCTGCATGCTGCCGAT
* * ** * * ** * * *
20788822 CCTACTACTGCAGGCCTTAGTCCAATCTAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCC
128 CCTACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCC
* ** **
20788887 AACCGACGAAACGAGCGGGCGGGCGTGCAGGCACTACGTCGGCCAGAGAGACGGGAAACGCAAGC
193 AACCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * *
20788952 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCATTACCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * * *
20789017 TTTATGTCTCGTAAACTCATACAATGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
20789082 CTC-TTTTCTATTTTTCATGATTTTCGAAACTTTTTGCAGCTCGAGATTTTTTAAAATTTTTTCG
388 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
20789146 AAAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTACAAAAAA
453 GAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
20789211 ATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
518 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAA
* * *
20789276 ACACTTTAATGGCTAGTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTT
583 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
20789341 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
20789406 TTTGCACACACCCCCCCGGGCCCCCCGATCGCCGGAACCCCAATGCCACCGATCAGGTTCTCCTA
713 TGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG------T-
* * *
20789471 CGATGCTCCGGCGGTGGTGCGCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
770 ---T-CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * ** *
20789536 TGTACTGTCACAACGC-TCAGTCCAGTCTGAT
831 TGTGCTGCCGCAACCCTTCGGTCTGGTCCGAT
* * **
20789567 CTTGGA-TGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
20789616 AGGCAGACAG
Statistics
Matches: 3883, Mismatches: 422, Indels: 294
0.84 0.09 0.06
Matches are distributed among these distances:
858 39 0.01
859 10 0.00
861 253 0.07
862 413 0.11
863 10 0.00
864 2 0.00
868 1 0.00
869 87 0.02
870 4 0.00
871 4 0.00
872 340 0.09
873 271 0.07
874 200 0.05
875 61 0.02
876 8 0.00
877 182 0.05
878 7 0.00
879 389 0.10
880 109 0.03
881 164 0.04
882 3 0.00
883 2 0.00
884 15 0.00
885 413 0.11
886 30 0.01
887 12 0.00
888 2 0.00
889 90 0.02
890 4 0.00
892 1 0.00
893 3 0.00
894 3 0.00
895 2 0.00
896 1 0.00
897 25 0.01
898 336 0.09
899 141 0.04
900 3 0.00
901 1 0.00
902 55 0.01
903 156 0.04
904 2 0.00
905 1 0.00
910 2 0.00
913 3 0.00
914 1 0.00
915 22 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (862 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAGC
AGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCGGGTCCCCCTCTGCATGCTGCCGATCCT
ACTGCCGCAACCCTCAGTCCGATCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAAACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
CTTCGGTCTGGTCCGAT
Found at i:20787378 original size:898 final size:893
Alignment explanation
Indices: 20785159--20789592 Score: 5605
Period size: 885 Copynumber: 5.0 Consensus size: 893
20785149 CTGGTCCGAT
* *
20785159 CTTAGACTGTGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTTCAGGCGTTCAGC
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * *
20785224 AAGCCAGAGGGGCAGGAGGCGCAAGCCGAGGATCGGCAGGGTCCCCCTCTGTGTGCTGCCGATCC
65 AGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCAGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
20785289 TACTGCCGCAACCCTCAGTCCGATCCGATTTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
130 TACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
20785354 CCGACGAAACGAGCGGGCGGACGGGTGGGTACTACGTCGGCTAGAGAGACAGGATGCGCAAGCCG
195 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
* *** * * *
20785419 TGGATCAATAGGGTGGTAGGCAAGTTTAGGCACATCTTCCTATTTCTGTGTGCCAGTGCCATTTT
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
*
20785484 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
20785549 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAAATTTTTTGGA
390 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTCGGA
* * * * *
20785614 AGAAG-TTTGGCCCAAAACTTGGTAGATGTGATCCTTTTATTTTTGTTGGCATGTGCAAAAAAAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAAT
* * * *
20785678 TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCAATTTCAAAC
519 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
20785743 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
20785808 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCCCACATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * *
20785873 TGCG--CACCCCCCGGCCCCCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAC
714 TGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCG-CAGTCAGGTTCTCCG-CGAT
* * *** * *
20785936 GCTCCGACGATGGTGCCCCGATGAAGAAAAATGTAACACCAGCACATGTCGGAGCCCAGCATGTG
777 GCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
** * * * *
20786001 CTATCGTAACCCTTGGTCCAATCCAATCTTAGACTGGGAATGAACCCCATATG
842 CTGCCGCAACCCTCGGTCCAAT-CGATCTTAGACTGGGAATGAACTCCATATG
* * *
20786054 CTTAGACTGG---G-A------A--CC-AAGTCAACCCACAAAACGAGCGTGCAGGTGTTCAGCA
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCA
* * * *
20786106 GGCCAGAGGGGCAGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCCTCTGCATGCTGTCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCAGGGTCCCCCTCTGCGTGCTGTCGATCCT
* ** * ** * * * * *
20786171 GCTGTTGCAACCATTGGTTCAGTCAGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAAC
131 ACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
20786236 CAACGAAACGAGCGAGCGGGTGGGTGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAG
196 CGACG-AA--A-CGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* *
20786301 CCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* *
20786366 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTATGTGAAGTTTCATGGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
20786431 ACTCGTTTTCTATTTTTCACGATTTTTGAAA-TGTTTTACGGTACGGGATTTTTTAAAATTTATT
387 ACTCGTTTTCTATTTTTCATGATTTTTGAAACT-TTTTACGGTTCGGGATTTTTTAAAATTT-TT
* * *
20786495 CGGAAGGCA-TTTTGGCCCCAAACTTGGTAGAGGTGGTCCTTGT-TTTTTGTTGGCATGCACAAA
450 CGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAA
* * *
20786558 AAAATTCATCTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAACAAGTGTCCCCATTT
514 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
20786623 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
579 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
20786688 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGTAACCATCGCACA
644 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
20786753 TTATGTGCGGACACCCCCCTGGCCCCCCTGATCGCCAGAACCCCATTGCCGCTAGTCAGGTTCTC
709 TCATGTGCGCACACCCCCC-GGCCCCCC-GATCGCCGGAACCCCAATGCCGC-AGTCAGGTTCTC
* * *
20786818 CAGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCTCATGCCTGAGCCCA
771 C-GCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *** * * * *
20786883 GCATGTGCTGCTGTAACCCTCGGTCTGGTTGAATCTTAGACTAGGAATGAACTCCGTGTG
835 GCATGTGCTGCCGCAACCCTCGGTCCAATCG-ATCTTAGACTGGGAATGAACTCCATATG
** * * *
20786943 CTTAGACTAGGAATGAACTTAGTATGCCTAAGTCAACCAACGAAACAAGCGTGCAGGTGCTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * * * **
20787008 CGGCCAGAGGGGCGGGATGCGCTAGCCGGGGATCAGTC-GGGTCTCTCTTTACGTGCTACCGATC
65 AGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GGCAGGGTCCCCCTCTGCGTGCTGTCGATC
* * * *
20787072 ATGCTGCCGCAACCCTCAGTCCGGTC-GATCTTAGACTGGGAATGAACTCCATATGCCTAGGCCA
129 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
20787136 ACTGATGAAACGATCGGGCGGGCAGGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCT
194 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
*
20787201 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGGTGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
20787266 TTATGGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
20787331 TTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTTGG
389 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCGG
* *
20787396 AAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAA
* * *
20787461 TTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAAA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
20787526 CACTTTAATGCCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
20787590 TCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
*
20787655 GTGCGCACACCCCCCCGGCCCCCCGATCGCCAGAACCCC-A------A-T-A-------C-C---
713 GTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCAGTCAGGTTCTCCGCGAT
* * *
20787700 G-TCTGACGATGGTGCCCCGACGAGGAAAAATGCGGCACCAGCAGATGCCCGAGCCCAGCATATG
777 GCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
20787764 CTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCATATT
842 CTGCCGCAACCCTCGGTCCAAT-CGATCTTAGACTGGGAATGAACTCCATATG
* * * *
20787817 CTTAGACTGGGAATTAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGCGCTTAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
* * * * * *
20787882 TGGCTAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GAGTCCCCCTCTGCATGCCGTCGATC
65 AGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-GCAGGGTCCCCCTCTGCGTGCTGTCGATC
* * * ** *
20787946 CTACTGTCGTAACCCTCAATTTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
20788011 ACCGACGAAACGAGCGGGCGGGCGGGCGTGCGGGCACTACGCCGGCCACAGAGACGGGATACGCA
194 ACCGACGAAACGAGCGGGCGGGC--G-G-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
*
20788076 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
**
20788141 ATTTTTATGGGGTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** *
20788206 CGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGA-GGTTCAGGATTTTTTAAAATCTT
385 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTTCGGGATTTTTTAAAAT-TT
* * *
20788270 TTCGGAAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTCTGTTGGCATGTTCAA
448 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAA
* *
20788335 AAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAAT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
20788400 TCAGACACTTTAATGTCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * **
20788465 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCATAC
643 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
20788530 ATCATGTGCGCATAGCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGATCAGGTTCTC
708 ATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCAG-TCAGGTTCTC
* * * * *
20788595 CGGCAATACTCTGACGATCGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
771 C-GCGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
20788660 GTATGTGCTACCGCAA-CC-C--T----T-G------GTCT--G---G---TCC-GAT-
835 GCATGTGCTGCCGCAACCCTCGGTCCAATCGATCTTAGACTGGGAATGAACTCCATATG
* *
20788694 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTAC-GAGCGCTCAG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAG-GCGCTCAG
* * * * * *
20788758 TC-GGCTAGGGGGGCGGGATACGCAAGCCGAGGATCGACGGGGTCCCCCTCTGCGTGCTGTCGAT
64 -CAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCAGGGTCCCCCTCTGCGTGCTGTCGAT
* * ** * ** * * *
20788822 CCTACTACTGCAGGCCTTAGTCCAATCTAATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCC
128 CCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * **
20788887 AACCGACGAAACGAGCGGGCGGGCGTGCAGGCACTACGTCGGCCAGAGAGACGGGAAACGCAAGC
193 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * *
20788952 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTGCCATTACCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * * *
20789017 TTTATGTCTCGTAAACTCATACAATGGTCCCTTACGCCTTCACGTGAAGTTTCATGGCAAGACGA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
20789082 CTC-TTTTCTATTTTTCATGATTTTCGAAACTTTTTGCAGCTCGAGATTTTTTAAAATTTTTTCG
388 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTCG
* * *
20789146 AAAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGTACAAAAAA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAA
*
20789211 ATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
517 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
20789276 ACACTTTAATGGCTAGTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
20789341 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * *
20789406 TTTGCACACACCCCCCCGGGCCCCCCGATCGCCGGAACCCCAATGCCACCGATCAGGTTCTCCTA
712 TGTGCGCACA-CCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCGCAG-TCAGGTTCTCC-G
* * * * *
20789471 CGATGCTCCGGCGGTGGTGCGCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
773 CGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * * * *
20789536 TGTACTGTCACAACGCTCAGTCCAGTCTGATCTTGGA-TGGGAATGAACTCCGTATG
838 TGTGCTGCCGCAACCCTCGGTCCAATC-GATCTTAGACTGGGAATGAACTCCATATG
20789592 C
1 C
20789593 CTAAGCCAAC
Statistics
Matches: 3078, Mismatches: 359, Indels: 201
0.85 0.10 0.06
Matches are distributed among these distances:
872 303 0.10
873 268 0.09
874 226 0.07
875 60 0.02
876 2 0.00
877 185 0.06
878 6 0.00
879 392 0.13
880 101 0.03
881 148 0.05
882 5 0.00
883 1 0.00
884 10 0.00
885 428 0.14
886 30 0.01
887 12 0.00
888 10 0.00
889 141 0.05
890 6 0.00
891 1 0.00
893 3 0.00
894 2 0.00
895 10 0.00
896 3 0.00
897 19 0.01
898 350 0.11
899 145 0.05
900 1 0.00
901 3 0.00
902 42 0.01
903 163 0.05
904 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCA
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCAGGGTCCCCCTCTGCGTGCTGTCGATCCT
ACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCAGTCAGGTTCTCCGCGATGCTC
TGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCAATCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:20790308 original size:26 final size:26
Alignment explanation
Indices: 20790279--20790331 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20790269 CTGGTCTAAT
20790279 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
20790305 CTTAGACTGGGAATGAACTCTTTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20790331 C
1 C
20790332 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20792113 original size:26 final size:26
Alignment explanation
Indices: 20792084--20792136 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20792074 CTGGTCCGAT
*
20792084 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20792110 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20792136 C
1 C
20792137 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20792251 original size:903 final size:898
Alignment explanation
Indices: 20789575--20792725 Score: 4086
Period size: 903 Copynumber: 3.5 Consensus size: 898
20789565 ATCTTGGATG
* * *
20789575 GGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGCAGACAGGCGGGCTGGCAGGC
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-A-ACGGGCGGGCTGGCGGGC
* *
20789640 ACTACGCCGGCCAGAGAGACGGGATGCACAAG-TCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
63 ACTACGCCAGCCAGAGAGACGGGATGCGCAAGCT-GTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
20789704 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATGGTCCC
127 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
20789769 TTACGCTTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATCTTTCATGACTTTTGAAAC
192 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGACTTTCGAAAC
* * * * ** * *** * *
20789834 TTTTTGA-GGCTCGAGAATTTTTAAAATTTTTTCAGAAGGATTTTTGGCTATAAACATGGTAGGC
257 TTTTT-ACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
20789898 GTGATCCTTGTATTTTTGTTGGGATGCACAAAAAAATTT-AGCTAAAAACTCAAAATGTATAAGA
321 GTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGA
*
20789962 TTTTGTGACCATTTGAAAAAAG-CATCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAACC
385 TTTTGTGACCATTTGAAAAAAGTC-TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
20790026 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
449 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
20790091 AATATAAGGGCCAAGTACTAGCACCGATCGCACATCATGTGCGCACATCCCCCCCGGCCCCCTCG
514 AATATAAGGGCCAAGTACCAGCACCG-TCGCACATCATGTGCGCACA--CCCCCCGGCCCCCT-G
* * * * * *
20790156 ATCGTCGTAACCCCAATGTCGCCGGTCAGGTTCT-C-CGA----C--GATGGTGCCTCGGGGAAA
575 ATCGCCGAAACCACAATGTCGCCGGTCAGGTTCTCCGCGATCTCCGGGATGGTGCCCCGGCGAAG
* * * * * *
20790213 AAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGTAACCCTCAGTCTGGTCTAA
640 AAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGCAACCCTCGGTCTGGTCCAA
* *
20790278 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTTTATGCCTAAGTCAACC
705 TCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACC
* * * * *
20790343 CACGAAACGAGCTTGCGGGCACTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCAAGGATC-AGC
770 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATC
* * * *
20790407 AGGGTCCCCCTTTGCGTGCTGGCAATCCTGCTGCCGCAACCCTCGATCTAG-TCCAATCTTAGAT
835 -GGGT-CCCCTTTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGATC-CGTTCCAATCTTAGAT
*
20790471 TG
897 TA
* * * *
20790473 GGAATGAAGTCCATATGCCTAAGGCAACCGACGAAATGAGC--AAGCGGGCGGG-TGGACGGGCA
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAA-CGGGCGGGCTGG-CGGGCA
* * * * * * *
20790535 CTACGCCGGCTAGAGTGACGGGATGTGCAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAAGC
64 CTACGCCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
20790600 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTT
129 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * * * * **
20790665 AAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTCTCCATTTTTCACGATTTTTTAAACTT
194 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGACTTTCGAAACTT
* * * * *
20790730 TTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAGGGAGTTTTTGTCCTAAACTTGGTAGACGTA
259 TTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
20790795 ATCCTTGTAGTTTTGTTGGCATGC-ACAAAAATATTGAGCTAAAAACTCGAAGTGTACAAGATTT
324 ATCCTTGTATTTTTGTTGGCATGCAAAAAAAAT-TTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * * *
20790859 TGTGACCATTTGAAAAAAGTGT-CCCATTTTATACACTTTAATTGCTACTGGCAACAAACCTGTA
388 TGTGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
20790923 AAATCTCAAATGCTCTCTAAGGGAGTGTGAGCTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
453 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * * *
20790988 TAAGGGCCAAGTACCAGCACCAATTGCACATCATGTGCGCACACCCCCTGGCCCCCCCGATCGCC
518 TAAGGGCCAAGTACCAGCACC-GTCGCACATCATGTGCGCACACCCCCCGG-CCCCCTGATCGCC
* * * * *
20791053 GGAACCACAATGTCGTCGATCAAGTTCTCCGGCGATGCTCCGGTGATGGTGCCCTGGCGAAGAAA
581 GAAACCACAATGTCGCCGGTCAGGTTCTCC-GCGAT-CTCCGG-GATGGTGCCCCGGCGAAGAAA
* * * * *
20791118 AATGCGTCACCAGGATATGCCCGAGCCCAGCATGTGTTGTCACAACCCTCGGTCCGGTCCAATCT
643 AATGCGACACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGCAACCCTCGGTCTGGTCCAATCT
* *
20791183 TAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCATACGCCTAAGTCAACCCAC
708 TAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCAC
* * *
20791248 GAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGGGATCGATCGGT
773 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGG
* * * *
20791313 TCCCCCTATGCGTGCTACCGATCCTACTGCCACAACCCTC-AGTCCGTTCCAATCTTAGACTA
838 T-CCCCTTTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGA-TCCGTTCCAATCTTAGATTA
* * * * *
20791375 GGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAG-TGAACCGACGGG-TGTTCGGGCAC
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAACGGGCGGGCTG-GCGGGCAC
**
20791438 TACAACAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
65 TACGCCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
20791503 CATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
130 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
20791568 AGCCTTCACGTGGAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCATGACTTTCGAAACTTT
195 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGACTTTCGAAACTTT
*
20791633 TTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGA
260 TTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * * *
20791698 TCCTGGTATTTTTTTTGGCATGCAAAAAAAATTTCTGCTAAAAACCCGAAGTGTACAAAATTTTG
325 TCCTTGTATTTTTGTTGGCATGCAAAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
20791763 TGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
390 TGACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
20791828 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATA
455 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
*
20791893 AGGGCCAAGTACCAGCACCTGCCGCACATCATGTGCGCACACCCCCCGGCCTCCCTGATCGCCGA
520 AGGGCCAAGTACCAGCACC-GTCGCACATCATGTGCGCACACCCCCCGGCC-CCCTGATCGCCGA
** * *
20791958 AACCGTAATGCCGCCGGTCAGGTTCTCCGACGATCCTCCGGGGATGGTGCCCCGACGAAGAAAAA
583 AACCACAATGTCGCCGGTCAGGTTCTCCG-CGAT-CTCC-GGGATGGTGCCCCGGCGAAGAAAAA
** * *
20792023 TATGACACCAGCACATGCCTGAGCCCAGCATGTGTTGAT-GCAACCCTCGGTCTGGTCCGATCTT
645 TGCGACACCAGCACATGCCCGAGCCCAGCATGTGTTG-TCGCAACCCTCGGTCTGGTCCAATCTT
* * *
20792087 AGACTGGGAATGGACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
709 AGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACG
* * *
20792152 AAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGAGCGGGATGCGCAAGCCGGGGATCGATCGGGT
774 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGT
* * * * * * *
20792217 CCCCTTCTACATGCTGCCGATCTTGCTACCACAACCCTCGATCC-TGTCCGATGTTACATTA
839 CCCCTT-TGCGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGT-TCCAATCTTAGATTA
* * * *
20792278 GGAATGAACTCCGTATGCCTAAGACAACTGACGAAACGAGCGGGA-GGGCGGGCAGGCGGGCACT
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAACGGGCGGGCTGGCGGGCACT
* * *
20792342 ACGTCAGCAAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
20792407 ATCTTCACATTTCTGCATGGCAATGCCTTTTTTATGGCTTGTAAATCCATACAATGGTCCCTTAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
20792472 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC---A----CG--A--TTT
196 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGACTTTCGAAACTTTT
* *
20792526 T-C---------------AAAA-CTTTTTGGAAGGAGTTTTGGCCCCAAACTTGTTAGACGTGAT
261 TACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
20792574 CCTTGTATTTTTGTTGGTATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
326 CCTTGTATTTTTGTTGGCATGCAAAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * * *
20792639 AACCATTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAA
391 GACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
20792704 TCTCAAATGCTCTTTAAAGGGG
456 TCTCAAATGCTCTTTAAGGGGG
20792726 CCAATATAAG
Statistics
Matches: 1980, Mismatches: 236, Indels: 97
0.86 0.10 0.04
Matches are distributed among these distances:
875 178 0.09
876 4 0.00
891 37 0.02
892 17 0.01
893 145 0.07
894 307 0.16
896 2 0.00
898 36 0.02
899 1 0.00
900 1 0.00
901 2 0.00
902 598 0.30
903 645 0.33
904 7 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (898 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAACGGGCGGGCTGGCGGGCACT
ACGCCAGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGACTTTCGAAACTTTT
TACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTGTTGGCATGCAAAAAAAATTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTCTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCGTCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCGCCGAAAC
CACAATGTCGCCGGTCAGGTTCTCCGCGATCTCCGGGATGGTGCCCCGGCGAAGAAAAATGCGAC
ACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGCAACCCTCGGTCTGGTCCAATCTTAGACTGG
GAATGAACTCAGTATGCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAG
CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCTTT
GCGTGCTGCCGATCCTGCTGCCACAACCCTCGATCCGTTCCAATCTTAGATTA
Found at i:20797063 original size:892 final size:888
Alignment explanation
Indices: 20792871--20806438 Score: 12752
Period size: 903 Copynumber: 15.2 Consensus size: 888
20792861 CGATCCAATT
* * * * * *
20792871 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCATGCGAGCGCTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * *
20792936 GGCCAGAGGGGTGGGATACGCAAGTCGGGCATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* *
20793001 GCTA-TCGCAACCCTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 GCTACT-GCAACCCTCAGTCT-GGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
20793064 ACCGACGAAACGAGCGGGCGGGCGGGCAGGCACTACGTCGGCCAGAAAGACGGGATGCGCAAGCC
193 ACCGACGAAACGA---GGCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
20793129 GTAGATCGATAGGGTGGTAGGTGTGTTTGGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
251 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
*
20793194 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGAC
316 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * ** * ** *
20793259 TCGTTTTCTATTTTTCATGATTATCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAG
381 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGG
* *
20793324 AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATAC-CTAAAAAA
446 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAA
*
20793388 ATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
510 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
20793453 ACACTTTAATAGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
575 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
20793518 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGCACTAGCACCCATCGCACATCA
640 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
20793583 TGTGCGCACACCCCCCGGCCCCCACAATCGCCGGAACCACAATGCCGTCGGTCAGGTTCTCCGAC
705 TGTGCGCACACCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAC
* * * * * *
20793648 GATGCTCCGACGATGGTGCCCCTGTGAAGAAAAATGCGGTACCAGCTCATGCTCGAGCCCAGTAT
769 GATGCTCTGGCGATGGTGCCCC-GTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * *
20793713 GTCCTG-TCGGAA-CC-C--T-CGGT-C---C-T-GA-T----TTG-A-TCTA----
833 GTGCTGCT-GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATTGC
*
20793747 ATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA-CC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
** * * ** * * *
20793811 GGAAAGAGGGGCAGGATACGCAAGCCGGGGATCGGTTAGGTCCCCCTCTGCGTGCTGTCAATCTT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * * *
20793876 GCTGCTACAACCATCGGTCTGGTCC-GATCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAA
130 GCTACTGCAACCCTCAGTCTGG-CCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
20793940 CCGGCGAAACGAGCGGGCGGGTGGGCGAGCAGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
194 CCGACGAAACGA---GGC----GGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
20794005 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCTC-ATGCC
248 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGC-CAATGCC
* * * *
20794069 ATTTTTATGGCTTGTAAATTCATATAATGGTCCCTTATGCCTTCACGTGAATTTTCATGGCAATA
312 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** *
20794134 CGACTCGTTTTCTATTTTTCACGATTTTTGAAA-TATTTT-CATTTTCGGGATTTTTTAAAAATT
377 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACT-TTTTGCGGTTT-GGGATTTTTTAAAATTT
* * *
20794197 TTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCACA
440 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
20794262 AGAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAACAAGTGTCCCCAT
505 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
20794327 TTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTAAAATGCTCTTTAAGGGGGTGT
570 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
20794392 GAGTTCTTGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCA
635 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
20794457 CATCAAGTGCGCACACCCCCCTGGCCCTCTCGATCCCCGAAACCCCAATGCCGTCGGTCAGGTTC
700 CATCATGTGCGCACACCCCCC-GGCCC-CCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * * * *
20794522 TCCGGCGATGCTCCGACGATGATGCCTCGGTGAAGAAAAAGGCGGCACCAGCACATGCCCAAGCC
763 TCCGACGATGCTCTGGCGATGGTGCC-CCGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *
20794587 CAACATGCGCTGCTGCAA-CC-C--T-CGGT-C---C----A----G--T---CT-GA-T-C
827 CAGCATGTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATTGC
* ** **
20794624 TTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCCATAAAATGAGCGTGCGGGCTTTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * *
20794689 GGCTAGAGGGGCGGGATGCACAAGACAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
** * * *
20794754 GCTGTTGCAACCCTCGGTCTGG-TTCGATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAA
130 GCTACTGCAACCCTCAGTCTGGCCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20794818 CCAACGAAACGAGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAGGCCATGGA
194 CCGACGAAAC--G-AGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
20794883 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTCTTGCCAATGCCATTTTTATG
256 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* *
20794948 GCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
321 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * ** * * *
20795013 TTTTATTTTTCATGA-TTTTCAAAATATTTTGTAGTTTGGGATTTTTTTAAATTTTTTTGAAAGG
386 TTCTATTTTTCACGATTTTTGAAACT-TTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG
** *
20795077 TTTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
450 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
20795142 GGTAAAAACTCGAAGTGTACAAGATTTTGTGGCCAATTGAAACAAGTGTCCCCATTTCAGACACT
515 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
20795207 TTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGA
580 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
20795272 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTTCCAGCACCCATCGCACATCATGTGC
645 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
20795337 GCACACCCCCCCGGCCCCCTCGATC-CCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
710 GCACA-CCCCCCGGCCCCC-CGATCGCC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* *
20795401 GCTCTGGCGATGGTGCCCCGGTGAAGAAAAATTCGACACCAGCACATGCCCGAGCCCAGCATGTG
772 GCTCTGGCGATGGTGCCCC-GTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
20795466 CTGCTGCAACCCT-AGGTCCAGTCCGATCCTAGACTGGGAATGAACTCCATATGC
836 CTGCTGCAACCCTCA-GTCCGGTCCGATCTTAGACTGGGAATGAACTCTAT-TGC
* * *
20795520 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * ** * * *
20795585 GGCCCGAGGGGCGAGATGCGCAAGCTGGGGATCAACTGGGTCCCTCTCTGTGTGCTTCCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * * *
20795650 GCTGC-CCTAACCCTC-GATCCGGTCC-AATCTTAGACTAGGAATGAACTCCGTATGCCAAAGCC
130 GCTACTGC-AACCCTCAG-TCTGG-CCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
20795712 AACCGAGGAAACGAACGGACGGGAGGGCGGGCGAGCACTACGCCGGCCAGAGAGACTGGATGCGC
192 AACC---G--ACGAA---AC--GA-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
20795777 AAGTCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
246 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
* * * * * * *
20795842 CATTTTTATGGCTTCTAAATTCGTACAATTGTCCCTTAAGCATTCACGTTAAGTTTCTTGACAAG
311 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
20795907 ACAACTCGTTTTCTATTTTTCACGATTTTT---A-------CGGTTCGAGATTTTTTTAAATTTT
376 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTT
* * * *
20795962 TTTGGAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGCCGTGCACAA
441 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20796027 AAAAATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATT
506 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
20796092 TCAGACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTATAAGGGGGTGTG
571 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
20796157 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAA
636 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
20796222 ATCATGAGTGCACACCGCCCCGGCCCCCCAGATTGCCAGAACCCCAATACCGTCGGTCAGGTTCT
701 ATCATGTGCGCACACC-CCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * ** * *
20796287 CCGACGATACTCCGGTGATGGTGCCCCGAAAAGAAAAATGCGGCACCAGCACATGCACAAGCCCA
764 CCGACGATGCTCTGGCGATGGTGCCCCGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *** * * *
20796352 GCATGTGCTACAATAACCCTCAGTCCGGTCTGATCTTAGATTGAGAATGAACTCTATGTGC
829 GCATGTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTAT-TGC
* ** * *
20796413 TTAGATTGGGAATGAACTCCGTATGCCTTCGTCAACCCACGGAATGAGCGTGCGGGCGCTCGGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* ** *
20796478 GGCCAGAGGGGCTGGATGTACAAGCCGGGGATCAGCCGGGTTCCCCCTCTGCGTGCTGCCGATCC
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGG-TCCCCCTCTGCGTGCTGCCGATCC
* * *
20796543 TACTACTGCAACCCTCATTTTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
129 TGCTACTGCAACCCTCAGTCTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
20796608 CTGACGAAACGA-GCGGGCGGGCACTACGTCGACCAAAGAGACGGGATGCGCAGGCCGTCGATCG
194 CCGACGAAACGAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
20796672 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCT
259 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
20796737 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
324 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* *
20796802 TATTTTTCACGATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTTAAATTTTTTCGGAAGGCA-T
389 TATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG-AGT
* * * * *
20796866 TTTGGCCCCAAACATGGTAGACGTCATCCCTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCT
453 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
20796931 AAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCGGACACTTTA
518 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
*
20796996 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
583 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*** **
20797061 TTGATGAGGGATAAAAGGCCAATATAAGGGCCAAGTATGAGCACCCATCGCACATCATGTGCGCA
648 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * ** *
20797126 CAGCCCCCCGACCCCCCCGATCGCCGGAAACCCAATGCCGTCAGTCAGGTTCTCTGGTGAAGCTC
713 CA-CCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
*
20797191 TGGCGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
776 TGGCGATGGTGCCCC-GTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * *
20797256 CGCAACCCTCATTCCGGTCCGATCTTAGACTGGGAAAGAACTCTGTATGC
840 TGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTAT-TGC
* *
20797306 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCTACCCACGAAATGAGCGTGCGGGCGCTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
** * * *
20797371 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTTAGGTCCCCCTCTACGTGCTACTGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * *
20797436 GCTA-TGACAACCATCAGTATGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
130 GCTACTG-CAACCCTCAGTCTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
20797500 CCGACGAAACGAGCGGGCGGGCGAACGGGCGAGCACTACTCTGGCCAGAGAGACGGGATGCGCAA
194 CCGACGAAACGA---GGC-GG-G--C--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
20797565 GCCGTGGATCGATGGGGTGGTAGG-GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
248 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
20797629 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
313 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * ** *
20797694 GATTAGTTTTCTATTTTTTAAGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
378 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTT
** **
20797759 TTGAAGGAGTTTTGGCCCCAAACTTTTTTAGACGTGATCCTTGTATCTTTT-TTGGCATGCACAA
443 CGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAA
* * *
20797823 AAAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATT
506 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
20797888 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGCTCTTTAAGGGGGTGTG
571 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
20797953 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCAC
636 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
20798018 ATCATGTGTGTACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
701 ATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * * * * *
20798083 CTGGCGATGCTCCGACGATGGTG-CCCGACGAAGAAAAATGAGACACCAGCACATGCCCGAGCCC
764 CCGACGATGCTCTGGCGATGGTGCCCCG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** *
20798147 AGCATGTGCTG-TCACAACCCTCGGTCCAATCCAATCTTAGACTGGGAATGAACTTCGTA-TGC
828 AGCATGTGCTGCT-GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAAC-TC-TATTGC
* * *
20798209 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * ** * *
20798274 GGCCAAAGGGGCAGGATGTGGAAGCTAGGTATCGATCGGGTCCCCCTCTGCATGCT----A--C-
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * *
20798332 -C-A---CAACCCTCAGTCTGGTCTGATCTTAGACAGGGAATGAACTCCATATGCCTAAGCCAAC
130 GCTACTGCAACCCTCAGTCTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
20798392 CGACGAAACGAGCGGGCACTATGGCGAGCGGGTACTACGCCGGCCAAAGAGACGGGATGTGCAAG
195 CGACGAAACGA---GG--C----G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
20798457 CCGTGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTATGCGTGCCAATGCCAT
249 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * *
20798522 TTTTATGGCTTGTAAATTCACACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
314 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * ** * *
20798587 ACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACAATTCGAGATTTTTTAAAATTTTTTC
379 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC
* * ** * *
20798652 GGAAGGATTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTCATTAGCATGAACAAAAA
444 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
20798717 AATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
509 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
20798782 GACACTTTAATGGCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
574 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
20798847 TCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCATCCATCGCACATC
639 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
20798912 ATGTGCGCACACCCCCCCGGCCCCCCCGATCACCAGAACCCCAATGTCGCCGGTCAGGTTCTTCG
704 ATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* *
20798977 ACGATGCTCTGGGGATGGTGCCCCGTTGAAGAAAAATGCGGCACCAGCACATGCCCGACCCCAGC
767 ACGATGCTCTGGCGATGGTGCCCCG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
** * *
20799042 ATGTGCTGCTGCATTCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTTCGTA-TGC
831 ATGTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAAC-TC-TATTGC
* * * * *
20799101 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGGCCGGTCAGCT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
** * * * *
20799166 GGCCAGAGGGATGGGATGGGCAAGCCGGTGATCGATCGGGTCCCACTCTGCGTGCTGTCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * * ** *
20799231 ACTACCGTAACCTTC-GAACT-GATTCACTCTTAGAGC-GGGAATGAACTCCGTATGCCTAAGCC
130 GCTACTGCAACCCTCAG-TCTGGCCTGA-TCTTAGA-CTGGGAATGAACTCCGTATGCCTAAGCC
*** * *
20799293 AACCGACGAAACGAGCAGGCGGGCAGGCGGGCACTACATTGGCCA-AGGAGATGGGATGCGCAAA
192 AACCGACGAAAC--G-AGGC--G--GGCGGGCACTACGCCGGCCAGA-GAGACGGGATGCGCAAG
* *
20799357 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCAT
249 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * *
20799422 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGCTTCATGGCAAGATG
314 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
20799487 ACTCGTTTTCTATTTTTCATGAATTTTGAAACATTTTACGGTTCGGGATTTTTTAAAATTTTTTC
379 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC
** *
20799552 GGAAGGAGTTTTGGCCCCAAACTTTTTTAGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAA
444 GGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
20799617 AAATTCAGCCAATAACTCGAAGTGTACAAGATTTTGTTACCATTTGAAAAAATTGTCCCCATTTC
508 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
** * * *
20799682 AGACACTTTAATGGCTACTGTTAGCAAACCTGTAAAATCTCAAATGTTCTTTAAAGGGGTGCGAG
573 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
20799747 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCACACAT
638 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
20799812 CATGTGCGCACACCCCCCCGGCCCCCCCAATCGTCGAAACCCAAATGCCGCCAGTCAGGTTCTCA
703 CATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * *
20799877 GGCGATGCTCTGGCGATGCTGCCCCGATGAAGAAAAATGAGGCACCAGCACATGCACGAGCCCAG
766 GACGATGCTCTGGCGATGGTGCCCCG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * * * * *
20799942 TATGTGATGCCGCAACCCTC-GATCCAGTCTGATCTTAGACTGCGAATGAACTCCATATGG
830 CATGTGCTGCTGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCTAT-TGC
* * * * * * *
20800002 TTAGACAGGGAATGAACTCCGTATACCTAAGTCAACCCAGGAAACGAGCGTGCAGGCACTCAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * *
20800067 AGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTACATGCTGTCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * *
20800132 GCTGCTGCAACCCTCGGT-TCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-A
130 GCTACTGCAACCCTCAGTCT-GGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20800195 TCGAATGAAACGAGTGGGTGGGTGGGCAGGCGAGCACTACGCCGGCCAGAGAGACGGGATGTGCA
194 CCG-ACGAAACGA-------GGCGGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
20800260 AACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTTGTGCCAATGCC
247 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
20800325 ATTTTTATGGCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTACATGGCAAGA
312 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * ** *
20800390 TGACTCATTTTCTTTTTTTTACTATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTTAAATTTTT
377 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
* *
20800455 TCAGAAGGAGTTTTGGCCCC-AACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
442 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
20800519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
507 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
20800584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGGGA
572 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
20800649 GTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACA
637 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** * *
20800714 TCATGTGCGCACACCCCACCGGTCCCCCCGATCGCGGGAACCCCAATTTCGCCGGTCAGGTTATC
702 TCATGTGCGCACACCCC-CCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* *
20800779 CGACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCA
765 CGACGATGCTCTGGCGATGGTGCCCCG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * *
20800844 GCATGTGCTGCCGTAACCTTCCGTCCGGTCCGATCTCAGACTGGGAATGAACTCCATATGC
829 GCATGTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTAT-TGC
* * ** *
20800905 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGATTGTGCGGGCGTTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * * * *
20800970 GACCAAAAGGGCGGGATGCACAAGCTGGGGATCGATCGGGTCCCCCTCTGCATGCTGCCAATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * * * * * * ** *
20801035 GCTACCGCAAACCTCGGTCCGATCC-AATCTTATACAGTTAATGAACTCCATATGCCTAAGCCAA
130 GCTACTGCAACCCTCAGTCTG-GCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
20801099 CCGACGAAATGAGCGGGCACTATGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAA
194 CCGACG-AA--A-C--G----A-GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
20801164 GTCGTGGATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTACCAATGCCA
248 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
20801229 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGAC
313 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** *
20801294 AACTCGTTTTCTATTTTTTACGATTTTCAAAACTTTTTTTCGGTTTGGGATTTTTTAAAATTTTT
378 GACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTGCGGTTTGGGATTTTTTAAAATTTTT
* * *** *
20801359 TCGGTAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTCATATGCATAAA
442 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
20801424 AAAATTCAGCTAAAAACTCAAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGT-CCCATTT
507 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
20801488 TAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
572 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
20801553 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATC-GACACCCATCGCAC
637 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCAC
* * * * *
20801617 ATCATGTACGCACACCCGCCGGCCCCTTCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTC
701 ATCATGTGCGCACACCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* ** * * *
20801682 C-AGCGATGCTCCGGCGATGGTGCACTGGTGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCT
765 CGA-CGATGCTCTGGCGATGGTGC-CCCGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
20801746 AGCATGTGCTACTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTA-CGC
828 AGCATGTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAAC-TC-TATTGC
** * ** ** * * ** *
20801808 TTAGACTGGGAATGAACTCAATATGCCTAAG-C--CACTTGAAAAAAGTGTCCGTAACCCTC-G-
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCG-GGCGCTCAGC
* ** ** ** * * * ** * **** ** **
20801868 -GTCCAGTCTGATCTTAGACTGTG-AA----TGAACTCCGTATGCTTAGACTGGGAATGAACT-C
65 CGGCCAG-AGGGGC-GGGA-TGCGCAAGCCGGGGA-T-CGTCGGGTCCCCCTCTGCGTG--CTGC
* * * ** ** ** * * ** ** *
20801926 CG-T-ATGCATA-AGTCAACCCACAAAACGAGTGTGCGGGCGCTCAG-CCGGCCA-G-A--GGGG
123 CGATCCTGC-TACTG-CAACCCTC---A-GTCTG-GCCTGATCTTAGACTGGGAATGAACTCCGT
** * * * * * * * ** * * * **
20801983 A-G-GGATGCGCAACCCG-GGGATCGA-TCGGGTC--CCCCT-CTGCATG-CTGCCGA-TC-TTA
181 ATGCCTAAGC-CAA-CCGACGAAACGAGGCGGG-CGGGCACTAC-GCCGGCCAG-AGAGACGGGA
* ** * ** * * * * **
20802038 CTGCCGCAA-CCGTCTG-TCCGATCCGATCTTAGTCTGGG--AATG-A-A-CTCCATATGCCTAA
241 -TG-CGCAAGCCGT-GGAT-CGATAGGGTGGTAG-GTGGGTTTAGGCACATCTTCATATTTCT--
* * * ******* * * * * * * *
20802096 GCCAACTGACGAAATAAGCGAGCGGGCGGGCGATGGGCACATCGCTGGCCAGAGAGACGGGAT-G
299 G-C--GTG-C-CAAT--GCCATTTTTATGGC--T-TGTAAAT---T---CATACA-A-TGG-TCC
* *** * * **** * * * * * *
20802160 CGTAAGCCGGGGATG-GATAGGATGGT-AGGTGGGTTTA-GGCACATCTTCATATTTATGCATG-
345 CTTAAGCC-TTCACGTGA-A-G-T-TTCA--TGGCAAGACGACTCGTTTTC-TATTT-TTCACGA
**** ** ** * ** * ** * *
20802221 CCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC--ACGTGAAGTT
401 TTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAAT--T---TT-----TTCGGAAG-G-AGTT
*** * *** ** **** * ** *** *
20802283 TCATGGCAAGACAAC-TCGTTTTC-T-ATTTTTCACG-ATTTTTGAAAACTTTTTACGGTTCAAG
454 T--TGGCCCCA-AACTTGGTAGACGTGATCCTT---GTATTTTTGTTGGC-ATGCAC--AAAAAA
** * ***** * * * * ** * *
20802344 ATT--TTTTAAAA-TTTTTTTGGA-AGGAGTTTTG-GCCCCAAACTTGGTAGACGTGAT--CC--
510 ATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTG-ACC--ATTTGAAAAAAGTG-TCCCCAT
** ** * * * * **
20802400 TT--GTA-TTTTTGTTGGC-A-T-GCA-CAAAACAATTCAGCTAAAAACTCGAA-G-TGTACAAG
570 TTCAG-ACACTTTAATGGCTACTGGCAGC-AAAC----CTG-TAAAATCTCAAATGCTCTTTAAG
**** * * * ** * * ***
20802456 ATTTTGTGA---C-C-A--TTTGA--A--AAAAGTGTCCCCAT-T-----TC-AG-A-CA-CTTT
628 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * * ***** ****** **** * *** * ** *
20802500 AATGGC-TA-C-TG-GCAC-CA-GAGTTGTAAAATC--TCAAATGATCTTTAAGGGGGT--GTGA
693 CATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCA
* * * * ** * * * * *
20802555 -GTTC-CTGA-GGT-TTGATGAGCGATAGG-GGGCC----A-ATATA-GGGGC-CAAGTCCCA-G
758 GGTTCTCCGACGATGCT-CTG-GCGAT-GGTGCCCCGTGAAGAAAAATGCGGCACCAG-CACATG
* * * * * * * * ** ** ***
20802607 CACCCATCGCACATCATGTGC-GC-ACACCCCCCCGACC-CCCCGATCGTCGGAAC-CCCAATG-
819 C-CCGA--GCCCAGCATGTGCTGCTGCAACCCTCAGTCCGGTCCGATC-TTAG-ACTGGGAATGA
* * * *
20802667 CCGCCAGT-C
879 ACTCTATTGC
* * ** *** *
20802676 -AAGTTCTCCGACAATG--CTCCG---G-C-AATGGTGC--CCCGACGAAGA--ACAATGCAGCA
1 TTAG-ACT--GGGAATGAACTCCGTATGCCTAA--GT-CAACCC-ACGAA-ATGAGCGTGC-G-G
* * * *** * *** * * ***
20802729 CCAACACATGCCGAGCCCAGCATTTGC-TG-T-CGCAA-CCCTCGAT--TTGGTTCGATCT-TAG
56 GC-GCTCA-GCCG-G-CCAG-AGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCT-G
* * * *** ** ** * *
20802787 ACTGGGAATG--GACTCC-G-TA-TGCTTAGATTGGGAATGAACC--C-----------------
115 -C-GTG-CTGCCGA-TCCTGCTACTGC-AACCCTCAGTCTG-GCCTGATCTTAGACTGGGAATGA
** * *
20802828 ----CGTATGCCTAAGCCAATTGACGAAACGAGCGGGCGGGCGGGCACCACGTCGGCCAGAGAGA
174 ACTCCGTATGCCTAAGCCAACCGACGAAACGA---GGCGGGCGGGCACTACGCCGGCCAGAGAGA
* * * *
20802889 CGGGATGCGCAAGCCATGGATTGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTCC
236 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * * *
20802954 TTGCGAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACTTGAAGTT
301 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
** *
20803019 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTTGGGATTTT
366 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTT
* * * *
20803084 TTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAATTTTGTAGACGTGATCCTTGTATTTTTGTTG
431 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * *
20803149 GTATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGTCCTTTTGAAAAAAG
496 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * * *
20803214 TGTCCCTATTTCAGACACTTTAATGACTACTGGCAGCAAACTTGTAAAATCTCAAAGGCTCTTTA
561 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
**
20803279 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATGAGCA
626 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * *
20803344 CCCATCACACATCATGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAACCACAATGCCGCCAGT
691 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGT
* * * * * *
20803409 CAGGTTCTCCGGCGATGCTC-GGATGATGGAGCCCCAGCGATGAAAAATGCAGCACCAGCACATG
756 CAGGTTCTCCGACGATGCTCTGG-CGATGGTGCCCC-GTGAAGAAAAATGCGGCACCAGCACATG
* * * * *
20803473 CCTGAGCCCAGCTTGTGCTG-TCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
819 CCCGAGCCCAGCATGTGCTGCT-GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT-
20803537 CGTA-TGC
882 C-TATTGC
* *
20803544 TTAGACCGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * ** * ** *
20803609 GGCTAGAGGGGCGGGATGCGTAAGCCAGGGG-TCACCCGGGTCCCCCTCTACGTGCTTTCGATCT
66 GGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
20803673 TGCTGCCGCAACCCT-TGATCCAGTCC-AACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 TGCTACTGCAACCCTCAG-T-CTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * *
20803736 AACCGATGAAACGAGCGGACGAGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTG
192 AACCGACGAAACGA--GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * *
20803801 GATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTA
254 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
*
20803866 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCG
319 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
20803931 TTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTATTTCAGAAG
384 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAG
* *
20803996 GATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATT
449 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATT
* * *
20804061 CAGCTAAAAACTCAAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCGGACA
513 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
20804126 CTTTAATGGCTACTCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
578 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
20804191 GAGGTTTGATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
643 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * *
20804256 GCGCACACCCCCCGGCCCCCCTGATCACCGGAAGCCCAATGCCGTCGGTCAGGTTCTCCTATGAT
708 GCGCACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* ** * *
20804321 GCTCCGATGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTG
772 GCTCTGGCGATGGTGCCCC-GTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * *
20804386 CTGGC-ACAACCCT-TGATTCGATCCGATGTTAGACTGGGAATGAACTTCGTA-TGC
836 CT-GCTGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAAC-TC-TATTGC
* * * * *
20804440 TTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCATGAAACGAGGGTGCAGGCGCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * ** ** * **
20804505 GGCCAGAAGGGTGGGATGCGCAAGCCACGGG-TCACCCGGGTCCCCCTCTATGAGCTATCGATCC
66 GGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** ** * * *
20804569 TGCTGCCGCAACCCTTGGTCCAG-TTCAACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 TGCTACTGCAACCCTCAGTCTGGCCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
20804633 ACCGACGAAACGAGCGGGAAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
193 ACCGACGAAACGA---GG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
20804698 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
254 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* * *
20804763 TGGCTAGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTTATGGCAAGACGACTCG
319 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * * *
20804828 TTTTTTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAG
384 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAG
* ** * *
20804893 GATTTTTGGCCCCAAACTTGGTAGGTGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAGAATT
449 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATT
20804958 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
513 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
20805023 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
578 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
20805088 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
643 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
20805153 GCGCACACCCCCCGATCCCCCCGATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGACGAT
708 GCGCACACCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
* ** * * *
20805218 GCTCCGGCGATGGTGCCCCGACAAAGGAAAAA-GTGGCACCAGCACATGTCAGAGCCCAGCATGT
772 GCTCTGGCGATGGTGCCCCG-TGAA-GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * * *
20805282 GCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCCATATGC
835 GCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTAT-TGC
* *
20805337 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGTTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * *
20805402 GGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGTTGGGTCCCCCTCTGCGTGCTGCCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* ** * * * * *
20805467 ACTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATCAACTCCATATGCCTAAGCCAAC
130 GCTACTGCAACCCTCAGTCTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
20805532 CGATGAAACGAACGGGCGGGCGGGCGGGCACTACGCCGGCTAGAAAGATGGGATGCGCAAGCTGT
195 CGACGAAACG-A------GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
*** * * **
20805597 GGATCGATAGGGTGGTAGGCAAGTTTTGGCACATCTTCATATTTCTACGTGCCAACACCATTTTT
253 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* *
20805662 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGACGTTTCATGGCAAGACGACTC
318 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** * ** *
20805727 GTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTCGAAA
383 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAA
* * * *
20805792 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTATTGGCATGCAAAAAAAAATT
448 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
20805857 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
513 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
20805922 CTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
578 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
20805987 -AGGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
643 GA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * ***
20806051 TGTGCACACCCGCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTGAACGACGA
707 TGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGA
* * * * *
20806116 TGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGT
771 TGCTCTGGCGATGGTGCCCCG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * * *
20806181 GCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTA-TGC
835 GCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAAC-TC-TATTGC
* ** * * * * *
20806236 TTAGACTGGGAATGAACTCCGCACACCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCGT-AAC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGC-TCAGC
* *
20806300 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCTGATCC
65 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *** * * * * * * *
20806365 TGGTACCATAACCCTCGGCCTGGTCC-AATCTTGGATTGGGAATAAACTCCTTATGCCTAAGCCA
129 TGCTACTGCAACCCTCAGTCTGG-CCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
20806429 ACCGACGAAA
193 ACCGACGAAA
20806439 TGAGCTGGCA
Statistics
Matches: 10490, Mismatches: 1690, Indels: 1001
0.80 0.13 0.08
Matches are distributed among these distances:
819 6 0.00
820 8 0.00
821 12 0.00
822 27 0.00
823 17 0.00
824 13 0.00
825 18 0.00
826 3 0.00
827 1 0.00
828 8 0.00
829 4 0.00
830 1 0.00
832 10 0.00
833 10 0.00
834 28 0.00
835 2 0.00
836 9 0.00
837 4 0.00
838 11 0.00
839 1 0.00
840 4 0.00
842 1 0.00
843 3 0.00
844 1 0.00
845 1 0.00
846 8 0.00
847 2 0.00
848 4 0.00
849 17 0.00
850 6 0.00
851 5 0.00
852 3 0.00
853 10 0.00
854 28 0.00
855 13 0.00
856 5 0.00
857 8 0.00
858 18 0.00
859 2 0.00
860 1 0.00
863 12 0.00
864 8 0.00
865 26 0.00
866 26 0.00
867 12 0.00
868 28 0.00
869 26 0.00
870 589 0.06
871 55 0.01
872 29 0.00
873 20 0.00
874 7 0.00
875 133 0.01
876 63 0.01
877 60 0.01
878 134 0.01
879 485 0.05
880 119 0.01
881 7 0.00
882 203 0.02
883 23 0.00
884 13 0.00
885 5 0.00
886 8 0.00
887 3 0.00
888 8 0.00
889 7 0.00
890 6 0.00
891 424 0.04
892 782 0.07
893 362 0.03
894 707 0.07
895 228 0.02
896 494 0.05
897 798 0.08
898 51 0.00
899 553 0.05
900 520 0.05
901 563 0.05
902 43 0.00
903 1261 0.12
904 786 0.07
905 336 0.03
906 3 0.00
907 11 0.00
908 2 0.00
909 9 0.00
910 2 0.00
911 2 0.00
912 30 0.00
913 9 0.00
914 39 0.00
915 10 0.00
916 11 0.00
917 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
CTACTGCAACCCTCAGTCTGGCCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCG
ATGGTGCCCCGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAAC
CCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATTGC
Found at i:20797315 original size:26 final size:26
Alignment explanation
Indices: 20797279--20797331 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20797269 CCGGTCCGAT
*
20797279 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
20797305 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
20797331 C
1 C
20797332 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:20798218 original size:26 final size:26
Alignment explanation
Indices: 20798182--20798234 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20798172 CCAATCCAAT
*
20798182 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20798208 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20798234 C
1 C
20798235 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20799103 original size:26 final size:26
Alignment explanation
Indices: 20799074--20799126 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20799064 TCGGTCCGAT
*
20799074 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20799100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20799126 C
1 C
20799127 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20800917 original size:26 final size:26
Alignment explanation
Indices: 20800881--20800930 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20800871 GTCCGATCTC
20800881 AGACTGGGAATGAACTCCATATGCTT
1 AGACTGGGAATGAACTCCATATGCTT
*
20800907 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCATATGC
20800931 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTT
Found at i:20801919 original size:26 final size:26
Alignment explanation
Indices: 20801880--20801932 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20801870 CCAGTCTGAT
*
20801880 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20801906 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20801932 C
1 C
20801933 ATAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20802818 original size:26 final size:26
Alignment explanation
Indices: 20802782--20802834 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20802772 TTGGTTCGAT
* *
20802782 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
20802808 CTTAGATTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
20802834 C
1 C
20802835 CTAAGCCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:20803546 original size:26 final size:26
Alignment explanation
Indices: 20803517--20803569 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20803507 CTGGTCCGAT
*
20803517 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
20803543 CTTAGACCGGGAATGAACTTCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
20803569 C
1 C
20803570 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:20804443 original size:26 final size:26
Alignment explanation
Indices: 20804407--20804465 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
20804397 CTTGATTCGA
20804407 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
20804431 TTCGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
20804457 TCCGTATGC
1 TCCGTATGC
20804466 CTAATTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 25 0.81
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:20804935 original size:897 final size:894
Alignment explanation
Indices: 20802808--20806505 Score: 5171
Period size: 897 Copynumber: 4.1 Consensus size: 894
20802798 ACTCCGTATG
* * ** *
20802808 CTTAGATTGGGAATGAACCCCGTATGCCTAAGCCAATTGACGAAACGAGCGGGCGGGCGGGCACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * * *
20802873 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGGTTGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * *
20802938 ATCTTCATATTTCTCCTTGCGAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
20803003 GCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
196 GCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
** * * * * * * *
20803068 TGTGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAATTTTGTAGACGTGAT
261 TGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGAT
*
20803133 CCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
326 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
* * * * *
20803198 GTCCTTTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGACTACTGGCAGCAAACTTGTAAAA
391 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
20803263 TCTCAAAGGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
456 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
** * *
20803328 GGGCCAAGTATGAGCACCCATCACACATCATGTGCGCACACCCCCCAGCCCCCCGATCGTCGGAA
521 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAA
* * * * * * *
20803393 CCACAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCGGATGATGGAGCCCC-AGCGATGAAAAAT
586 CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGA-CGAAGAAAAAT
* * * * * *
20803457 GCAGCACCAGCACATGC-CTGAGCCCAGCTTGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTA
650 GCGGCACCAGCACATGCTCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTA
* * *
20803521 GACTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
715 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGA
* * *
20803586 AATGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCGTAAGCCAGGGGTCACCCGGGTC
780 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGTCACCCGGGTC
* * * * *
20803651 CCCCTCTACGTGCTTTCGATCTTGCTGCCGCAACCCTTGATCCAGTCCAAC
845 CCCCTCTACGTGC-TTCGATCCTGCTACCACAACCCTCGGTCCAGTCCAAC
* * *
20803702 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGAGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* *
20803767 ACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTACGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
20803832 ATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* **
20803897 GCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTT
196 GCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
* * * *
20803962 TACGGTTCGGGATTTTTTAAAATTATTTC-AGAAGGATTTTTGGCCCCAAACTTGGTAGACATGA
261 TGCAGTTCGAGATTTTTTAAAATTTTTTCGA-AAGGATTTTTGGCCCCAAACTTGGTAGACATGA
20804026 TCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
325 TCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTT
* * *
20804091 TTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTCGCAGCAAACCTGTAA
389 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
20804156 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCAATAT
454 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
**
20804221 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCTGATCACCG
519 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-GATCGTCG
* * * *
20804286 GAAGCCCAATGCCGTCGGTCAGGTTCTCCTATGATGCTCCGATGATGGTGCCCCGGCGAAGAAAA
583 GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGACGAAGAAAA
* * * * *
20804351 ATGCGGCACCAGCACATGCTC-GAGCCCAGCATGTGCTGGCACAACCCTTGAT-TCGATCCGATG
648 ATGCGGCACCAGCACATGCTCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GATCCGATC
* *
20804414 TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAATTCAACCCA
712 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
20804479 TGAAACGAGGGTGCAGGCGCTCAGCCGGCCAGAAGGGTGGGATGCGCAAGCCACGGGTCACCCGG
777 TGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGTCACCCGG
* * * * * *
20804544 GTCCCCCTCTATGAGCTATCGATCCTGCTGCCGCAACCCTTGGTCCAGTTCAAC
842 GTCCCCCTCTACGTGCT-TCGATCCTGCTACCACAACCCTCGGTCCAGTCCAAC
*
20804598 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAAGGGCGGGCAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-CGGGCGGGCAC
*
20804663 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
65 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
20804728 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTAGTAAATTCATACAATGGTCCCTTA
130 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * **
20804793 AGCCTTCA-TGTGAAGTTTTATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTT
195 AGCCTTCACT-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
***
20804857 TTTGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGGTGTG
259 TTTGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACATG
* * *
20804922 ATCCTTGTATTTTTTTTTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
324 ATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
20804987 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
388 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
20805052 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
453 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* *
20805117 TAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGATCCCCCCGATCGTC
518 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCGATCGTC
* ** *
20805182 GGAACCCCAATGCCGTTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACAAAGGAA
582 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGACGAA-GAA
* * *
20805247 AAA-GTGGCACCAGCACATG-TCAGAGCCCAGCATGTGCTGCCGTAACCCTCGGTC-CAGTCCGA
646 AAATGCGGCACCAGCACATGCTCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGA-TCCGA
* *
20805309 TCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
710 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * ***
20805374 CATGAAATGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCC-GAGGATCGGT
775 CATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGGTCACC
* * * * ** ** *
20805438 TGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCGGTCTGGTCTGAT
839 CGGGTCCCCCTCTACGTGCT-TCGATCCTGCTACCACAACCCTCGGTCCAGTCCAAC
* * * *
20805495 CTTAGACTGAGAATCAACTCCATATGCCTAAGCCAACCGATGAAACGAACGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A---GCGGGCGGGCGGG
* * * * *** *
20805560 CACTACGCCGGCTAGAAAGATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGCAAGTTTTG
62 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * **
20805625 GCACATCTTCATATTTCTACGTGCCAACACCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
127 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
20805690 TTAAGACTTCACGTGACGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
192 TTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
*
20805755 TTTTTGCAGTTC-AGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
257 TTTTTGCAGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGAC
* * * *
20805819 ATGATCCTTTTATTTTTATTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
321 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
*
20805884 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTG
386 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
20805949 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AGGGTTTGATGAGGGATAGGTGGCCA
451 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCA
* *
20806013 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCGCCGGCCCCCCCGATC
515 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATC
* *** *
20806078 GTCGGAACCCCAATGCCGTCGGTTAGGTTGAACGACGATGCTCCGGTGATGGTGCCCCGACGAAG
579 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGACGAAG
* * * *
20806143 AAAAATACGGCACCAGCACATGC-CCGAGCCCAACATGTGCTGCCGCAACCCTCGGTCTGATCTG
644 AAAAATGCGGCACCAGCACATGCTCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCG
* * **
20806207 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGCACACCTAAGTCAAC
709 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
20806272 CCATGAAACGAGCGTGTGGGTGCGT-AACCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCG
774 CCATGAAACGAGCGTGCGGGCGC-TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGG-TC-
* * * * * *
20806335 A-TCGGGTCCCCCTCTACGTGCTGCTGATCCTGGTACCATAACCCTCGG-CCTGGTCCAAT
836 ACCCGGGTCCCCCTCTACGTGCTTC-GATCCTGCTACCACAACCCTCGGTCC-AGTCCAAC
* * * *
20806394 CTTGGATTGGGAATAAACTCCTTATGCCTAAGCCAACCGACGAAATGAGCTGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G-A-GCGGGCGGG
* * * * *
20806459 CGGGCAGTATGCCGGCCAGAGAGACGGGATGTGCAAGCTGGGGATCG
58 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
20806506 GCTGGGTCCT
Statistics
Matches: 2511, Mismatches: 254, Indels: 69
0.89 0.09 0.02
Matches are distributed among these distances:
894 316 0.13
895 213 0.08
896 328 0.13
897 770 0.31
898 41 0.02
899 531 0.21
900 253 0.10
901 5 0.00
902 1 0.00
903 51 0.02
905 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTT
TGCAGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACATGAT
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAA
CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATG
CGGCACCAGCACATGCTCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGGTCACCCGGGTCC
CCCTCTACGTGCTTCGATCCTGCTACCACAACCCTCGGTCCAGTCCAAC
Found at i:20805339 original size:26 final size:26
Alignment explanation
Indices: 20805310--20805362 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20805300 CCAGTCCGAT
20805310 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
20805336 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
20805362 C
1 C
20805363 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20806593 original size:171 final size:172
Alignment explanation
Indices: 20806299--20806676 Score: 453
Period size: 171 Copynumber: 2.2 Consensus size: 172
20806289 GGGTGCGTAA
* *
20806299 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GATCGGGTCCCCCTCTACGTGCTGCTGAT
1 CCGGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGGATCGGGTCCCCCTCTACGTGCTGCTGAT
* * ** * *
20806363 CCTGGTACCATAACCCTCGGCCTGGTCCAATCTTGGATTGGGAATAAACTCCTTATGCCTAAGCC
66 CCTGCTACCACAACCCTCGGCCTGGTCCAATCTCAGACTGGGAATAAACTCCTTATGCCTAAGCA
* * * *
20806428 AACCGACGAAATGAGCT-GGCAGGCGGGCGGGCGGGCAGTATG
131 AACCGACGAAACGAG-TGGGCAGGCAGGCGGGCGGGCACTAAG
* * * *
20806470 CCGGCCAGAGAGACGGGATGTGCAAGCTGGGGATCGGCT-GGGTCCTCCTCTACGTGCTG-TCGA
1 CCGGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGGATCGGGTCCCCCTCTACGTGCTGCT-GA
* * * *
20806533 TCTTGCTGCCACAACCCTCAGTCC-GGTCCAATCTCAGACTGGGAATGAACT-CTGTATGCCTAA
65 TCCTGCTACCACAACCCTC-GGCCTGGTCCAATCTCAGACTGGGAATAAACTCCT-TATGCCTAA
* **
20806596 GCAAACCGATGAAACGAGTGGGTGGGCAGGCGGGCGGGCACTAAG
128 GCAAACCGACGAAACGAGTGGGCAGGCAGGCGGGCGGGCACTAAG
* *
20806641 CCGGCCAGGGAGACGGGATGCGCAAGCCGTGGATCG
1 CCGGCCAGAGAGACGGGATGCGCAAGCCGGGGATCG
20806677 ATAGGGTGGT
Statistics
Matches: 175, Mismatches: 27, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
170 4 0.02
171 166 0.95
172 5 0.03
ACGTcount: A:0.21, C:0.28, G:0.34, T:0.17
Consensus pattern (172 bp):
CCGGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGGATCGGGTCCCCCTCTACGTGCTGCTGAT
CCTGCTACCACAACCCTCGGCCTGGTCCAATCTCAGACTGGGAATAAACTCCTTATGCCTAAGCA
AACCGACGAAACGAGTGGGCAGGCAGGCGGGCGGGCACTAAG
Found at i:20808655 original size:878 final size:874
Alignment explanation
Indices: 20806572--20808994 Score: 3601
Period size: 877 Copynumber: 2.8 Consensus size: 874
20806562 AATCTCAGAC
* * *
20806572 TGGGAATGAACTCTGTATGCCTAAGCAAACCGATGAAACGAGTGGGTGGGC--AGGCGGGCGGGC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA-GAG-GGGCGGGCGGAGGCGGGCGGGC
* * *
20806635 ACTAAGCCGGCCAGGGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
64 ACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
20806700 CACATCTTCATATTTCTGCATGCCAATGCCACTTTTATGGCTTGTAAAATCATAAAATGGTCCTT
129 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
20806765 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCCATTTTTCACGATTTTTGAAACT
194 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACT
** * * * *
20806830 TTTTGCAATTCAGGATTTTTTAAAAATTTATTCGGAAGGATTTTTGGCCCCAAACTTGGTAAACG
259 TTTTGCGGTTCGGGATTTTTTAAAAATTT-TTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACG
*
20806895 TGATCCTTGTATTTTTGTTGGCATGCATAAAAAAGATCAGCTAAAAACTCGAAGTGTACAAGATT
323 TGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAG-TCAGCTAAAAACTCGAAGTGTACAAGATT
*
20806960 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGT
387 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
20807025 AAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTC-TAGAGGTTTGATGAGGGATAGGGGGCCAA
452 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTA-AGGTTTGATGAGGGATAGGGGGCCAA
* *
20807089 TATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCGATCG
516 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG
* *
20807154 TCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCTGGCGAAGA
581 TCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGCGAAGA
* * * * *
20807219 AAAATGTGGCACCAACACGTGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCTGAT
646 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCT-CAACCCTCGGTCCGGTCTAAT
* **
20807284 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCAATGAAACGAGCATGCGGGCGCTCAGC
710 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCATGCGGGCGCTCAGC
* * * * *
20807349 CGGCCAGAAGGGCAGGATGCGCAAGCTGGGGATCTGCCGGGTGCCCCTCTGCGTGCTACCGATCT
775 AGGCCAGAAGGGCAGGATGCACAAGCCGAGGATCTGCCGGGTGCCCCTCTGCATGCTACCGATCT
* * ** * * *
20807414 TGCTATCGTACCCTCGGTCAGGTCTGATCTTAGAC
840 TGCTATCGAACCCTCGATCACATCTAATCTTACAA
* * *
20807449 TGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CAAA-AGGAGCGGACGGACAGGCGGGCGGGC
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAGAGGGGCGGGCGG--AGGCGGGCGGGC
* * * *
20807512 ACTACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCAATAGAGTGGTCGGTGGGTTTAGG
64 ACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
20807577 CACATCTTCATCTTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCAGACAATAGTCCCT
129 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
20807642 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTATATTTTTCATGATTTTTGAAACT
194 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACT
* * * * *
20807707 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAAGGAGTTTTGGCCCCAAACGTGGTAGATGT
259 TTTTGCGGTTCGGGATTTTTTAAAAATTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACGT
20807772 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTT
324 GATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
20807837 TTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
388 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
**
20807902 AAATCTCAAATGCTCTCCAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATA
453 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
20807967 TATGGGCCAAGTACCAGTACCCATC-CACATCATGTGCGCACACCCCCCCGGCCCCCCGATCATC
518 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC
* *
20808031 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAA
583 GGAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGCGAAGAAA
* * *
20808096 AATGCGGCACCAGCACATGCCCGAGTCCAGTATATGCTG-TCTAACCCTCGGTCTGGTCTAATCT
648 AATGCGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCTC-AACCCTCGGTCCGGTCTAATCT
* *
20808160 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCAG
712 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCATGCGGGCGCTCAGCAG
* * * *
20808225 GCCAGAGGGGCGGGATGCACAAGCCGAGGAT-TGGCCGGGT-CCCTTCTGCATGCTGCCGATCTT
777 GCCAGAAGGGCAGGATGCACAAGCCGAGGATCT-GCCGGGTGCCCCTCTGCATGCTACCGATCTT
* * *
20808288 GCT-GCTGCAACCCTCTATCCCATCTAATCTTACAA
841 GCTATC-G-AACCCTCGATCACATCTAATCTTACAA
*
20808323 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGCGGGCGGGCGGGTGGGCGGGCGG
1 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA-GAG-GGGCGGGC-GG-AGGCGGGCGG
* * *
20808388 GCACTACGCCGGCCAGAAAGGCGGGATTCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
62 GCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
20808453 GGCACATCTTCAAATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
127 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
** *
20808518 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGTTTTTTGAAA
192 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAA
* *
20808583 CTTTTTGGGGTTTGGGATTTTTTAAAAATTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGAC
257 CTTTTTGCGGTTCGGGATTTTTTAAAAATTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGAC
* * *
20808648 ATGATCCTTTTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
322 GTGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGAT
*
20808713 TTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTA
386 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
** * *
20808777 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGTGATAGGGGGCCAA
451 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAA
20808842 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGAT
516 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGG-CCCCCCGAT
** ** *
20808907 CGTCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCGACGAA
579 CGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGCGAA
*
20808971 GAAAACTGCGGCACCAGCACATGC
644 GAAAAATGCGGCACCAGCACATGC
20808995 TGGGCTCGGG
Statistics
Matches: 1392, Mismatches: 135, Indels: 36
0.89 0.09 0.02
Matches are distributed among these distances:
872 1 0.00
873 31 0.02
874 166 0.12
875 134 0.10
876 233 0.17
877 389 0.28
878 344 0.25
879 36 0.03
880 58 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (874 bp):
TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAGAGGGGCGGGCGGAGGCGGGCGGGCAC
TACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
TTGCGGTTCGGGATTTTTTAAAAATTTTTTGGAAGGAATTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCAAAAAAAAGTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGA
ACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAAT
GCGGCACCAGCACATGCCCGAGCCCAGCATATGCTGCTCAACCCTCGGTCCGGTCTAATCTTAGA
CTGGGAATGAACTCCGTATGCCTAAGTCAACCAACAAAACGAGCATGCGGGCGCTCAGCAGGCCA
GAAGGGCAGGATGCACAAGCCGAGGATCTGCCGGGTGCCCCTCTGCATGCTACCGATCTTGCTAT
CGAACCCTCGATCACATCTAATCTTACAA
Found at i:20809495 original size:510 final size:510
Alignment explanation
Indices: 20808497--20809504 Score: 1603
Period size: 510 Copynumber: 2.0 Consensus size: 510
20808487 TTTTATGGCT
* *
20808497 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTC
1 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTC
** ** * * **
20808562 TATTTTTCACGTTTTTTGAAACTTTTTGGGGTTTGGGATTTTTTAAAAATTTTTTGGAAGGAATT
66 TATTTTTCACAATTTTCAAAACCTTTTGCGGTTCAGGATTTTTTAAAAATTTTTTGGAAGGAATT
*
20808627 TTGGCCCCAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTA
131 TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTA
*
20808692 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAAT
196 AAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
20808757 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
261 GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* *
20808822 AATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
326 AATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACA
* * *
20808887 CCCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTTCTCCGACGATGCTCC
391 CCCCCCACGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATAAGGTTCTCCGACGACGCTCC
* *
20808952 GACGATGGTGCCCGACGAAGAAAACTGCGGCACCAGCACATGCTGGGCTCGGGCA
456 GACGATGGTGCCCGACAAAGAAAACTACGGCACCAGCACATGCTGGGCTCGGGCA
* * *
20809007 TGTAAATTCATACAATGGTCCCTTACGCTTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTCTC
1 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTC
*
20809072 TATTTTTCACAATTTTCAAAACCTTTTGCGGTTCAGGATTTTTT-AAAATTTTTTCGGAAGGAGT
66 TATTTTTCACAATTTTCAAAACCTTTTGCGGTTCAGGATTTTTTAAAAATTTTTT-GGAAGGAAT
* * *
20809136 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TTGGCATTCACAAAAAAA-TCAGC
130 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGCAAAAAAAAATTCAGC
20809199 TAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
194 TAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTT
* *
20809264 AATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
258 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
* *
20809329 TTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGC
323 TTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGC
* *** * *
20809394 ACACCTCCCACGGCCCCCCCGATCGTCGGAACCCCAATGTGGCTGGTAAGG-TCTCCGACGACGC
388 ACACCCCCCACGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATAAGGTTCTCCGACGACGC
20809458 TCCGACGATGGTGCCCCGACAAAGTAAAA-TACGGCACCAGCACATGC
453 TCCGACGATGGTG-CCCGACAAAG-AAAACTACGGCACCAGCACATGC
20809505 CCGAGCCCAG
Statistics
Matches: 456, Mismatches: 37, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
509 76 0.17
510 371 0.81
511 9 0.02
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (510 bp):
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTCTC
TATTTTTCACAATTTTCAAAACCTTTTGCGGTTCAGGATTTTTTAAAAATTTTTTGGAAGGAATT
TTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
AATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGCACA
CCCCCCACGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATAAGGTTCTCCGACGACGCTCC
GACGATGGTGCCCGACAAAGAAAACTACGGCACCAGCACATGCTGGGCTCGGGCA
Found at i:20810439 original size:724 final size:717
Alignment explanation
Indices: 20809007--20811721 Score: 4047
Period size: 724 Copynumber: 3.8 Consensus size: 717
20808997 GGCTCGGGCA
* * * *
20809007 TGTAAATTCATACAATGGTCCCTTACGCTTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTCTC
1 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
20809072 TATTTTTCACAATTTTCAAAACCTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGT
66 TATTTTTCATAATTTTCAAAA-TTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTTGGAAGGAGT
*
20809136 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTT-TTGGCATTCAC-AAAAAAATCAGC
129 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAAATCAGC
*
20809199 TAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
193 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20809264 AATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
258 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
20809329 TTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGC
323 TTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * * *
20809394 ACACCTCCCACGGCCCCCCCGATCG-TCGGAACCCCAATG-TGGCTGGTAAGG-TCTCCGACGAC
388 AC-CCCCCCCCGGCCCCCCCGATCGCT-GGAACCCCAATGCCGTC-GATCAGGTTCTCCGACGAT
* * * * *
20809456 GCTCCGACGATGGTGCCCCGACAAAGTAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
450 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTG
* * * * * * * * ** *
20809521 TTACCGTAACCCTCGGTCTGGTCTGATCTTATATTGCGAATGAACTCCGTATGCCTAAGGCAACC
515 CTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACC
* * * *
20809586 GACGAAACGAGCGGGTTGGCAGGCGGGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
580 GACGAAACGAGC-GGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
20809651 CGTGGATCGATAGGATGGTTGGTGGGTTTAGGCACATCTTCATATTTATGCATGCCAGTGCCATT
644 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
20809716 TTTGTGGCT
709 TTTATGGCT
* * *
20809725 TGT-AATATCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCACGTTTT
1 TGTAAAT-TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
20809789 CTATTTTTCATGATTTTCAAAATATTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAAGATT
65 CTATTTTTCATAATTTTCAAAAT-TTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGT
* * * *
20809854 TTTGGCCCCAAACTTGTTAAACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCT
129 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCT
*
20809919 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCACCATTTCAGACACTTTA
194 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
20809984 ATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
259 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
20810049 TTGATGAGTGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
324 TTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC-
* *
20810114 TAACCCCCCCCCCCGGCCCCCTCGATCGCTGGAGCCCCAATGCCGTCGATCAGGTTCTCCGACGA
388 --A--CCCCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGA
*
20810179 TGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGT
449 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGT
* *
20810244 GCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAAC
514 GCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAAC
* *
20810309 CGACGAAACGAGCTGGTGGGCGGGCGGGCGGGCACAACGCCAGCCAGAGAGACGGGATGCGCAAG
579 CGACGAAACGAGC-GGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
20810374 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
643 CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
20810439 TTTTATGGCT
708 TTTTATGGCT
*
20810449 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTA
1 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * *
20810514 TATTTTTCATGATTTTTGAAACTTTTTGAGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTT
66 TATTTTTCAT-AATTTTCAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTT
* *
20810579 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCGTGCACAAAAAAAATCAGCTA
130 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTA
*
20810644 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-GAAAACTTTA
195 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTA
* *
20810708 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGGTGTGAGTTCTCGAGGT
259 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
20810773 TTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
324 TTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * * * * *
20810838 CAACCACCCCAGCCCCCCCGATCGTTGGAACCCCAATGCTGCCGATCAGGTTCTCTGACGATGCT
389 C-CCCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCT
20810903 CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTG
453 CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTG
* * *
20810968 CTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGAC
518 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGAC
* *
20811033 GAAACGAGC---GGGCGGGCGGGCAGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTG
583 GAAACGAGCGGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTG
* * * *
20811095 GATCGATAGGGTGGTAGGTTGCTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
648 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
20811160 TGGCT
713 TGGCT
*
20811165 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTC
1 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
20811230 TATTTTTCATAATTTTCAAACCTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTT
66 TATTTTTCATAATTTTCAAA-ATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTT
20811295 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTA
130 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTA
*
20811360 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAA
195 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
20811425 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTT
260 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
20811489 TGATGAGGAATAGGAGGCCGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
325 TGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * * *
20811554 ACCCTCCCGGCACCCCCGATCGCCGAAACCCTAGTGCCGTC-AGTCAGG---T-------T-CTC
390 CCCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGA-TCAGGTTCTCCGACGATGCTC
* *
20811607 CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGC
454 CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGC
* * * *
20811672 CGAAACCCTTGGTCCGGTCCAATCTTAGACTCGGAATGAACTCTATATGC
519 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATATGC
20811722 TTACACTGGG
Statistics
Matches: 1829, Mismatches: 148, Indels: 55
0.90 0.07 0.03
Matches are distributed among these distances:
703 109 0.06
704 1 0.00
711 1 0.00
713 1 0.00
714 35 0.02
715 92 0.05
716 396 0.22
717 8 0.00
718 150 0.08
719 199 0.11
720 189 0.10
721 1 0.00
722 1 0.00
723 36 0.02
724 599 0.33
725 11 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (717 bp):
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCATAATTTTCAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTT
TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACC
CCCCCCCGGCCCCCCCGATCGCTGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCG
GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGAA
ACGAGCGGTGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CT
Found at i:20811746 original size:26 final size:26
Alignment explanation
Indices: 20811695--20811747 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20811685 CCGGTCCAAT
* *
20811695 CTTAGACTCGGAATGAACTCTATATG
1 CTTACACTCGGAATGAACTCCATATG
* *
20811721 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTCGGAATGAACTCCATATG
20811747 C
1 C
20811748 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTACACTCGGAATGAACTCCATATG
Found at i:20812610 original size:26 final size:26
Alignment explanation
Indices: 20812572--20812624 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20812562 CTGGTCTGAT
* *
20812572 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20812598 CTTAGACTAGGAATTAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20812624 C
1 C
20812625 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20813500 original size:26 final size:26
Alignment explanation
Indices: 20813471--20813523 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20813461 CCGATCCGAT
20813471 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20813497 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20813523 C
1 C
20813524 CCAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20813837 original size:899 final size:888
Alignment explanation
Indices: 20810970--20814436 Score: 4611
Period size: 881 Copynumber: 3.9 Consensus size: 888
20810960 ATGTGCTGCT
* * * *
20810970 GCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGA
1 GCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
20811035 AACGAGCGGGCGGGCGGGCAGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCG
66 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
20811100 ATAGGGTGGTAGGTTGCTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
* *
20811165 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
** * *
20811230 TATTTTTCATAATTTTCAAACCTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTT
261 TATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
*
20811295 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTA
326 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
20811360 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA-AACACTTTA
391 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAA-ACTTTA
20811424 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGT
455 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
20811488 TTGATGAGGAATAGGAGGCCGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
520 TTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
* * * *
20811553 CACCCTCCCGGCACCCCCGATCGCCGAAACCCTAGTGCCGTCAGTCAGGTTCTCCGGCGATGGTG
585 CACCC-CCCGGC-CCCCCGATCACCGGAACCCTAATGCCGCCAGTCAGGTTCTCCGGCGATGGTG
* ** * *
20811618 CCCCGACGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGAAACCCT-T
648 CCCCGACGAAGAAAAATACATCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCT
* * * *
20811682 GGTCCGGTCCAATCTTAGACTCGGAATGAACTCTATATGCTTACACTGGGAATGAACTCCGTATG
713 GATCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
20811747 CCTAAGTCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAAGGGTGGCATGCGTAAAC
778 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * ** *
20811812 TGGGGATCAGTCAGGTCCCCCTCTGCATGCTATCGATCCTGCTGCC
843 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
** *
20811858 GCAA-CCTTCGGTCTGGTGTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAACCAACCGACG
1 GCAACCCTT-GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
20811922 AAACGA----GCGGGCAGGCGGGCACTACGCCGGTCAAAGAGACGGGATGCGTAAGCCGTGGATC
65 AAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
**
20811983 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
130 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
* * * *
20812048 TTTTAAATTCAAACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTT
195 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
* * *
20812113 CTATTTTTCTCGATTTTCAAAACTTTTTGCGGTTTGTGATTTTTTAAAATTTTTTTGGAAGGAGT
260 CTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * *
20812178 TTTGGTCCCAAACTTGGTAGACGGGATCCTTGTATTTTTGTTGGCGTGCAAAAAAAAATTCAGCT
325 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* * *
20812243 AAAAACTCGATGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
390 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTA
* * * *
20812308 ATGGCTACTGGTAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTATGAGTTCTCGAGGT
455 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
* *
20812373 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCACACATCATGTGCGCA
520 TTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCA
** * * * *
20812438 CA----CC--CCTTCCGATCACCAGAACACC-AATGCCACCGGTCAGGTTCTCCGGCAATGGTGC
585 CACCCCCCGGCCCCCCGATCACCGGAAC-CCTAATGCCGCCAGTCAGGTTCTCCGGCGATGGTGC
* * * *
20812496 CCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGTAA-CCTTT
649 CCCGACGAAGAAAAATAC-ATCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCT
* ** * * * *
20812559 GATCTGGTCTGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTAGGAATTAACTCCGTATG
713 GATCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATG
** * * * * *
20812624 CCTAAGTCAACAAACGAAACAAGCGTGCGGGCACTCAGCCGGCTAAAGGGGCGGGATGCGCAAGT
778 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * *
20812689 CGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCTATCCTACTACC
843 CGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
** * * * * *
20812735 GCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCAAGGA
1 GCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* ** * * ** * * *
20812800 AACGAGTGGGCGGGCGGTTGGGCATTGCATCGACCAGAGAGACGGGATGCGCCAGTCGTGGATCG
66 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
** * *
20812865 ATAAAGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGA-GTGCCAATGCCATTTTTATGCC
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-ACGTGCCAATGCCATTTTTATGGC
* * *
20812929 TTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGACTCGTTTT
195 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
* * * * * *
20812994 CTATTTTTCACGATTTTTAAAACTTTTTACGGTTTAGGATTTTTTAAAATTTTTTCAGATGTAGT
260 CTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
20813059 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGGACAAAAAAATTCAGCT
325 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
20813124 AAAAACT-AAGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGAAACTTT
390 AAAAACTCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTT
* * * **
20813188 AATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTTGATT
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
20813253 TTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTACCAGTACCCTTCACACATCATGTGCGC
519 TTTGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
*
20813318 ACACCCCCCGGCCCCCCGGATCATCGGAACTCC-AATGCCGCCAGTCAGGTTCTCCGGTGATGCT
584 ACACCCCCCGGCCCCCC-GATCACCGGAAC-CCTAATGCCGCCAGTCAGG-T-T-C-----T-C-
* * *
20813382 CTGGCGATGGTGCCCCGGCGAAGAAAAATACATCACCAGCACATGCCCAAGCCTAGCATGTGCTG
637 C-GGCGATGGTGCCCCGACGAAGAAAAATACATCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
20813447 CTGCAACCCTCT-ATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
701 CCGCAACCCTCTGATCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAAT
* * * *
20813511 GAACTCCGTATGCCCAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCG
766 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* *
20813576 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTTTTGCGTGCTGCCGATCCTGCTACC
831 GGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * * *
20813634 GCAACCCTTGGTCTGGCCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCTAACCGATGA
1 GCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
20813699 AACGAGCGGGCGGGCGGGCGGGCATTACGCTGGCCAGAGAGACGGGATACGCAAGCCATGGATCG
66 AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
20813764 ATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTGTGGCT
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
*
20813829 TGTAAATTCATACAATGGT-CCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
* * *
20813893 TATTTTTCATGATTTTCAAAACTTTATGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
261 TATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * *
20813958 TTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTTTTGGCATGCACAAAAGAATTCATCTA
326 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* * * *
20814023 AAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAA
391 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAA
20814088 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
456 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
20814153 TGATGAGGAATAAGGGGCCAATATAAGGGCCAAGTACCAG----CA-C-C-CATCGTGTGCGCAC
521 TGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
* ** * *
20814211 ACCCCCCCGGCCCCCCCAATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCC
586 A-CCCCCCGG-CCCCCCGATCACCGGAACCCTAATGCCGCCAGTCAGGTTCTCC---G--G---C
* * * *
20814276 GATGATGGTGCCCCGGCGAAGAAAAATACGTCACCAGCACATGCCCGAGCCTAGCATGTGCTGTC
641 ---GATGGTGCCCCGACGAAGAAAAATACATCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* *
20814341 GCAACCCTC-GGTCCGGTCCAATCTTAGACTGGCAATGAACTCCATATGCTTAGACT-GGAATGA
703 GCAACCCTCTGATCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
* * * *
20814404 ACTCCATATACCTAAGCCAACCGACGAAACGAG
768 ACTCCGTATGCCTAAGTCAACCCACGAAACGAG
20814437 TGGGCAGACG
Statistics
Matches: 2249, Mismatches: 281, Indels: 95
0.86 0.11 0.04
Matches are distributed among these distances:
876 3 0.00
877 290 0.13
878 6 0.00
880 3 0.00
881 454 0.20
882 1 0.00
883 1 0.00
884 393 0.17
885 83 0.04
886 1 0.00
887 7 0.00
888 85 0.04
889 3 0.00
890 2 0.00
891 51 0.02
892 141 0.06
893 7 0.00
894 1 0.00
896 1 0.00
897 1 0.00
898 316 0.14
899 395 0.18
900 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (888 bp):
GCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
TATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
ACCCCCCGGCCCCCCGATCACCGGAACCCTAATGCCGCCAGTCAGGTTCTCCGGCGATGGTGCCC
CGACGAAGAAAAATACATCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCTGAT
CCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCT
AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
Found at i:20814408 original size:25 final size:26
Alignment explanation
Indices: 20814363--20814412 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
20814353 CCGGTCCAAT
20814363 CTTAGACTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
20814389 CTTAGACTGG-AATGAACTCCATAT
1 CTTAGACTGGCAATGAACTCCATAT
20814413 ACCTAAGCCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.32, C:0.22, G:0.18, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:20815129 original size:26 final size:26
Alignment explanation
Indices: 20815089--20815142 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
20815079 GGTCTGATCT
*
20815089 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTAGGAATGAACTCCATATGCC
* *
20815115 TAGACTAGGATTGAACTCCGTATGCC
1 TAGACTAGGAATGAACTCCATATGCC
20815141 TA
1 TA
20815143 AGTCAACCAA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCC
Found at i:20816325 original size:856 final size:863
Alignment explanation
Indices: 20814389--20821468 Score: 5257
Period size: 866 Copynumber: 8.0 Consensus size: 863
20814379 ACTCCATATG
* * *
20814389 CTTAGACT-GGAATGAACTCCATATACCTAAGCCAACCGACG-AA--A-CGAGTGGGCAGAC---
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGC-GACGGG
* * * * * * *
20814446 -GAGCACTACACCGGTCAGAGAGACGGGATGTGCAAGCCGTGGATCAATAGGATGGTAGGTGGTT
65 TGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** *
20814510 TTAAGCACATCTTCATATTTCTGTGTGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
20814575 TCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCA
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
20814640 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTATTTCGGAAGGAGTTTTGGCCCCAAA-TTGGT-
260 AAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
20814703 GAACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTACAAACTCGAGGTGTACA
324 G-ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
20814768 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
20814833 CCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTT-A--A-----GAG----TGAGG-TTGTTGA--GATAGGGGG
20814898 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCACCCCC
503 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC-CCCCC
* * *
20814963 GATCGTCGAAACCCCAATGCAGCCGATCAGG----T------T-CTCCGACGATGGTGCCCC-AG
566 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGA-
* * * * *
20815016 TGAAGAAAAATACGGCACCAGCATATGCTCGAGCCCAACATGTGCTGCCACAACCCTAGGTCTGG
630 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC---GTC-GG
* * * *
20815081 TCTGATCTTAGACTGGGAATGAACTCCATATGCCTAGACTAGGATTGAACTCCGTATGCCTAAGT
691 TC----C---GA-T----AT----T-C-GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
20815146 CAACCAACAAAATGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGGGATACGCAAGCTGGGGAT
738 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGAT
** ** * * ** * * *
20815211 CGGTCGGGTCGTTCGT-TGCATGCTG-CTGATCCTGCTACTACAACACTCAGTCTTG-TCCAAT
803 CGACCGGGTC-CCCCTCTGCGTGCTGTC-GATCCTGCTACCGCAACCCTCAGTC-TGATTCGAT
* * *
20815272 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACCGATGAAACAAGCGAGC-GG-G-C----
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGACGGGT
*
20815330 GGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
20815395 TAGTCACATCTTCATATTTCTACATGCCGATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * **
20815460 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTTACGATTTTCAA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
20815525 AACTTTTTACGGTTCAGGATTTTTTTAAATTTTTTTCATAAGTAGTTTTGGCCCCAAACATGGTA
261 AACTTTTTACGGTTC-GGA-TTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
20815590 GACATGATCCTTGTATTTTTGTTGGCATGCAGAAAAAAATTCAGCTAAAAACTAGAAAGTGTACA
324 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTGTACA
20815655 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
20815720 CCTCTAAAATTTCAAATGCTCTTTAA-AG-G-GG-TG-TGA-ATAGGGGGCCAATATAATGGCCA
453 CCTGTAAAATCTCAAATGCTCTTTAAGAGTGAGGTTGTTGAGATAGGGGGCCAATATAAGGGCCA
*
20815779 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC-CTCGTCGGAACCCCAA
518 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAA
* * ** * *
20815843 TGTCGCCGGTCAGGTTCTTCGACGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATACGACAC
583 TGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCAC
* *
20815908 CAGCACATGCCCGAGCCAAGCATGTGCTGGCGCAACCC-TCGGTCC-AT-TTCGAT-CTTAGACT
648 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCGTCGGTCCGATATTCGATGCTTAGACT
* * * * *
20815969 GGGAATGAACTCCATATGCCTAAGTCAACCAATGAAACGAGCGTGCGGATGCTCAGCCGCCCAGA
713 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGA
* * * *
20816034 GGGGCGGGATGCGCAAGCCGAGGATCGACCAGGTCCCCCTCTGTGTGCTGTCGATCCTACTGCCG
778 GGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCG
*
20816099 CAACGCTCAGTCTGATTCGAT
843 CAACCCTCAGTCTGATTCGAT
20816120 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGCACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCG-ACGGG
*
20816185 TGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 TGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
20816250 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
20816315 TCCTTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
20816380 AAACTTTTTACGGTTCGGGGTATTTTAAAATTTTTTCGGAAGTAGTTTTGGCCCCAAACTTGGTA
260 AAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
*** *
20816445 GACGTGATCCTTGTATTTTTGAAGGCATGCA-AAAAAAATTCAGCTAAAAAC-CAAAAGTGTACA
324 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-GAAGTGTACA
* *
20816508 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGAAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
20816573 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAATTTTTTATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAA----GAGTGAG--------GTTGT-TGA--GATAGGGGG
* * * * *
20816638 CCAATATAATGGCCAAGTACCAGTACCCATCACACATCATGTGCGCACACCCCCCCGACCCCCCA
503 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCG
* * * * * **
20816703 ATCGTCGGAACCTCAATGCCGCCGGTTAGGTTCTCCGGTGATGCTTCGGTGATGGTGCCCCGACG
567 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGACG
*** * * *
20816768 AAGAAAAATATATCACCAGCACATGCCTGA-CCCTAGCATGTGCTGCTGCAACCC-TCTGTCC-A
632 AAGAAAAATACGGCACCAGCACATGCCCGAGCCC-AGCATGTGCTGCCGCAACCCGTCGGTCCGA
* * * * ** * * * * *
20816830 -ATCCGAT-CTTAGACTGGCAATAAACTCCGTATG-CTTAG---A--CTGGGAATGAAC-TCCGT
696 TATTCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * ** *** * * * * ** * * ***
20816886 ATGCTTAGACTGGGAATGA-ACTCCGTATGC-CTAAGTCAACCCA-CGAAACGAGCGTACAGGTG
761 GTGCTCAG-CCGGCCA-GAGGGGCGGGATGCGC-AAGCCGA-GGATCG-ACCG-G-GTCCCCCT-
** * * ** ** * * *** *
20816948 CTTAGT-CGGCCAGAGGGGC-GAGATGCGCAAGCCGGGGATC-G-GTCGAGT
818 CTGCGTGCTGTC-GA--TCCTGCTA-CCGCAACCCTCAG-TCTGATTCGA-T
*** ** * ** * * ** * *
20816996 C--CCCCTCTGCATG--CTGCCG-AT-CCTGCTGTCGCAACCCTTGGTCCAGCCCGATCTTAGAC
1 CTTAGACTGGGAATGAACT-CCGTATGCCT-AAG-C-CAA-CC---GACGA-AACGAGC-GAG-C
* ** ** * ** * * * *
20817055 AGGGAATGAACTCCGTATGC-CTAAGCCAACCGATGAAACGAGCGGGCGGGTGAGCAGGCACTAC
55 -GGG--CG-AC-GGGTGGGCACTACGCCGGCC-A-GAGA-GA-C--G-GGATGCGCAAG--C--C
** * * * * * **** ** *** ** **
20817119 GTCGGCCAGAGAGACGGGATGCGAAAGCCATGGATCGATAGGGTGGTAGGT-GGGTTTAGGCACA
104 GT-GG--ATCGATA-GGG-TG-G-TAG--GTGGGT--TTAGGCACAT-CTTCATATTTCTGCATG
* * * * * ** * ** ** *
20817183 TC-AT--CATATTTCT-ACATGCCAATGCCATTTTAATGGCTTCTAAATTCATA-CAATGGTC-C
157 CCAATGCCATTTTTATGGCTTGTAAAT-TCA-TACAATGG--TC--CCTT-A-AGC-CT--TCAC
* * * * * * * * ** **** * *
20817242 CTAAAGCCTTCACGTCCAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAA
211 GTGAAG-TTTCATGGCAAG----ACGACTCGTTTTCT-ATTTT-------TCACGATTTTTGAAA
* * *
20817307 CTTTTTACGGTTTGAGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGTCCCAAACTTGGTTGA
263 CTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
20817371 CGTGATCCTTGTATTTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTC-ACGGTGTACAA
326 CGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTACAA
* *
20817435 GATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
20817500 CTATAAAATCTGAAAGGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAA--------GAG---T-GAGG-TTGTTGA--GATAGGGGGC
* *
20817565 CAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACAACCCCCGGCACCCCCGA
504 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGA
* * *
20817630 TCGTCGGAACCCC-A-G-CGCC-GTC-GG----TCAG-G-TTCTCCGACGATGGTGCCTCGACGA
568 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGACGA
* * * * *
20817684 AAAAAAATGCGGCACCAGCACATGCCTGAACCCAGCATGTGTTGCCGCAACACTCGGTCTGGTCC
633 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC-C-C-GTC-GGT-C
* *
20817749 GATCTTAGACTAGGAATAAACTCCATATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
693 ---C---GA-T----AT----T-C-GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
20817814 CCCACAAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCC-AGGGATCG
741 CCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCG
* * * * * *
20817878 GCCAGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACCGCAACCCTC-GATCTGGTGCGAT
805 ACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAG-TCTGATTCGAT
* * * * *
20817937 CTTAGTCTGGGAATGAACTCCGTACGCCTAAGCCAATCGACGAAACGAGCGGGTGGGCGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGC-GACGGG
** * *
20818002 CAGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTTGGT
65 TGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
20818067 TTAGGCACATCTTCACATTTCTGCATGCCAATGCCATTTTTATGGCTTGTACATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
20818132 TCCCTTAAGCCTTCATGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
20818197 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-GAAAAGAGTTTTGGCCCCAAAGTTGGT
260 AAACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGT
* * *
20818261 AGACGTGATCCTTGTATTTTTTTTGGCGTGCAC-AAACAATTCAGCTAAAAACTCAAAGTGTACA
323 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
20818325 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
20818390 CCTTTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGT
453 CCTGTAAAATCTCAAATGCTCTTT-AA-------GAG---T-GAGG-TTGTTGA--GATAGGGGG
* * * * *
20818455 TCAATATAAAGGCCAATTACCAGAACCCATCGCACATCATGTACGCACA------------CC--
503 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* *
20818506 -C-T--------CAATGCCGCCGGTCTGG-T-TT------T--T-CGACGATGGTGCCCCGATGA
568 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGACGA
* * *
20818550 AGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTTC
633 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C-GTC-GG-TC
* *
20818615 AATCTTAGAGTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
693 ---C---GA-T----AT----T-C-GATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * * * * *
20818680 CCCACGAAACGAGCGTCCGGGCACTCAACCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATTGG
741 CCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGA
* * * * * * * * *
20818745 CCGGGTCCCCTTCTACGTGTTATCGATCCTGCTGCTGTAACCCTCAGTGT-AGTCTGAT
806 CCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCTGATTC-GAT
* * *
20818803 CTTAGACTGGGAATGAACTCCATATGCCTAGGGCAACCGACGAAACGA---A-CGGGCG--GGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGACGGGT
* ** * *
20818862 -GGCACTACACAAGCCAGAGAGATGGGATGCGCAAGCCGTGGAT-GATAGGGTGGCAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
20818925 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATAGCTTGTAAATTTATACAATCGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * *
20818990 CCTTTAAGCCTTCACGTGAAGTTTAATGGCGAGACAACTCATTTTCTATTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* ** *
20819055 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGGTAG
261 AACTTTTTACGGTTC-GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
20819120 ACATGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCT-ACAACTCGAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
20819183 ATTTTGTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
20819248 TGTAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAA--------GAG---T-GAGG-TTGTTGA--GATAGGGGGCC
* * * *
20819313 AATATAAGGGCCAAGTACCAGCACCCATCGTAAATCATGTGCGGACACCCCCCCCGACCGCCCCG
505 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-G-CACACCCCCCGGCC-CCCCG
* * * * * ** *
20819378 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTT-TCCGGTGATGCTTC-AGTGATGGTGCCTTGGC
567 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGA-CGATGGTGCCCCGAC
** * *
20819441 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCC-TCAGTCCGA
631 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCGTCGGTCCGA
* * ** *
20819505 T-CT-GAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATAAGCGTGCAG
696 TATTCGATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * * ** * *
20819567 GTTCTCAGCTGGCCAGAGGGGTGGGATGTGTAAGTC-AGGGATCG-GTGGGGCCCCTTCTGCGTG
761 GTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGACCGGGTCCCCCTCTGCGTG
* ** * *
20819630 CTGTCGATCTTGCTACCGTGACCCTCAGTC-CAGTCTGAT
825 CTGTCGATCCTGCTACCGCAACCCTCAGTCTGATTC-GAT
* ** * * * *
20819669 CTTAGACTGGGAATGAACTCCGTATGCCTAAGGCAACCGATAAAATGAACGGGCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGC-GACGGG
* * * * * *
20819734 TGGGTACTACTCCTGCCAGAGAGACGTGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTTGGT
65 TGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
20819799 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAAAGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
20819864 TCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
20819929 AAACTTTTTCCGGTTCGAGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGCCCCAAATTTGGTA
260 AAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
20819994 GATGTGATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGATGTGTACAA
324 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
20820059 GATTTTGTTACCATTTGAAAAAAGTGTCCCCATATT-AGACACTTTAA-GG-----GG--G----
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCAT-TTCAGACACTTTAATGGCTACTGGCAGCAAA
* ** * * *
20820111 --TGTCAGTTCTC-GA-G--GTTT--GA-TGA----G--G-GATAGAGGGCCAATATAAGGGCCA
453 CCTGTAAAATCTCAAATGCTCTTTAAGAGTGAGGTTGTTGAGATAGGGGGCCAATATAAGGGCCA
*
20820160 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAGCCCCCCCGATCGCCGGAACCC
518 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG-G-CCCCCCGATCGTCGGAACCC
* * * * * * * ** ** **
20820225 CAATGCTGTCGATCAGGTTCTCCGGTGATGCTTCGACGATGGTTCCTTGGGGAAGAAAAATGTGG
580 CAATGCCGCCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGG
* *
20820290 -ACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCGACCCTCGATCCGATCCGATCTTAGACTG
645 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC-AACC-CG-T-CG----G-TC-----C--
20820354 GGAATAAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
694 -G-AT--A-TTCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * *
20820419 GCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCT
753 GCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCT
* * * * * *
20820484 CTGCGTGCTGCCGATCCTGCTACAGTAACCCTCGGT-TCGATGCAAT
818 CTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCT-GATTCGAT
* * * * * * * *
20820530 CTTAGACTGGGAATAAACTCTGTATGCCTAAGCCAACTGACGAAATGAGCGGGGCGGGTGGGCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GAGCGGG-CGACGG
** * *
20820595 GCAGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAAGTGGG
64 GTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
20820659 TTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
129 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
20820724 GTCCCTTAAGCCTTCACGTGAAGTTTCATCGG-AAGATGACTCGTTTTCTATTTTTCATGATTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCAT-GGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * ** *
20820788 TGAAACCCTTTGCGGTTCGAGAATTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGG
258 TGAAACTTTTTACGGTTCG-GATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* *
20820853 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCCAAAAACTCGAAGTGTAC
322 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * *
20820918 AAGATTTTGTGATCATTTGACAAAAGTGTCCCTATTTTAGACACTGTAATGGCTACTGGCAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
20820983 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAA--------GAG---T-GAGG-TTGTTGA--GATAGGGG
* *
20821048 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCTCGGCCCCCCG
502 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* *
20821113 ATCGGCGGAACCCCAATGCCACCGGTCAGGTTC-TCAGGCGATGCTCCGACGATGGTGCCCCGAC
567 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTTC-GGCGATGCTCCGACGATGGTGCCCCGAC
* * *
20821177 GAAGAAAAATGA-GGCACCAACACAT-CCCAAGCCCAGCATGTGCTGCCGTAACCCTCGATCCGA
631 GAAGAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-CG-T-CG-
* * *
20821240 TCCGATCTTGGACTGAGAATGAACTCCGTAAGCTTAGACTTGGAATGAACTCCGTATGCCTAAGT
690 ---G-TC-----C---G-AT--A-TTCG-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** *
20821305 CAACCCACGAAACAAGCGTGCGGGCGCTCAGTTGGCTAGAGGGGCGGGATGCGCAAGCC-AGGGA
738 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGA
* ** * * * * ** * * * *
20821369 TTGGTCGGGTCCCTCTCTACGTGCTGCCAATCCTGCTACTACAACCCTCGGTCCGGTTCAAT
802 TCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCTGATTCGAT
* * * *
20821431 CTTAGATTTGGAATGAACTCTGTATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
20821469 AATGAAATAA
Statistics
Matches: 5047, Mismatches: 786, Indels: 710
0.77 0.12 0.11
Matches are distributed among these distances:
832 3 0.00
833 8 0.00
834 119 0.02
835 45 0.01
836 2 0.00
837 1 0.00
838 1 0.00
839 2 0.00
843 1 0.00
844 4 0.00
845 1 0.00
847 4 0.00
848 174 0.03
849 8 0.00
850 2 0.00
851 1 0.00
852 2 0.00
853 98 0.02
854 20 0.00
855 71 0.01
856 374 0.07
857 233 0.05
858 44 0.01
859 9 0.00
860 91 0.02
861 410 0.08
862 32 0.01
863 33 0.01
864 5 0.00
865 11 0.00
866 415 0.08
867 90 0.02
868 3 0.00
869 25 0.00
870 34 0.01
871 19 0.00
872 9 0.00
873 18 0.00
874 174 0.03
875 257 0.05
876 162 0.03
877 61 0.01
878 9 0.00
879 7 0.00
880 3 0.00
881 3 0.00
882 3 0.00
883 23 0.00
884 237 0.05
885 41 0.01
886 57 0.01
887 103 0.02
888 6 0.00
889 4 0.00
890 2 0.00
891 199 0.04
892 22 0.00
893 146 0.03
894 3 0.00
895 3 0.00
896 2 0.00
898 4 0.00
899 4 0.00
900 8 0.00
901 305 0.06
902 18 0.00
903 15 0.00
904 66 0.01
905 12 0.00
906 17 0.00
907 3 0.00
908 4 0.00
909 4 0.00
910 3 0.00
911 19 0.00
912 12 0.00
913 9 0.00
914 9 0.00
915 67 0.01
916 12 0.00
917 9 0.00
918 3 0.00
919 6 0.00
920 2 0.00
921 5 0.00
922 5 0.00
923 6 0.00
924 84 0.02
925 21 0.00
926 195 0.04
927 4 0.00
928 1 0.00
929 1 0.00
930 6 0.00
931 3 0.00
932 5 0.00
933 11 0.00
934 6 0.00
935 3 0.00
937 1 0.00
938 4 0.00
939 4 0.00
940 6 0.00
941 34 0.01
942 10 0.00
943 15 0.00
944 12 0.00
945 6 0.00
946 8 0.00
947 22 0.00
948 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (863 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGACGGGT
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTACGGTTCGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGAGTGAGGTTGTTGAGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGC
CGCCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCGTCGGTCCGATATTCGATGCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG
GCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAA
CCCTCAGTCTGATTCGAT
Found at i:20816866 original size:26 final size:26
Alignment explanation
Indices: 20816837--20816915 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
20816827 CCAATCCGAT
* *
20816837 CTTAGACTGGCAATAAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20816863 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20816889 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20816915 C
1 C
20816916 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20820381 original size:26 final size:26
Alignment explanation
Indices: 20820345--20820397 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20820335 CCGATCCGAT
*
20820345 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
20820371 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
20820397 C
1 C
20820398 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:20820716 original size:861 final size:855
Alignment explanation
Indices: 20817519--20821468 Score: 3594
Period size: 861 Copynumber: 4.5 Consensus size: 855
20817509 CTGAAAGGCT
*
20817519 CTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
1 CTTTAATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTA
* * * *
20817583 CTAGCACCCATCGCACATCATGTGCGCACAACCCCCG-GCACCCCCGATCGTCGGAACCCC-A-G
66 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAGCCCCCCCGATCGCCGGAACCCCAATG
* * * * * * *
20817645 CGCCG-TCGG--TCAGGT--T-CTCCGACGATGGTGCCTCGACGAAAAAAAATGCGGCACCAGCA
131 CGTCGATCGGTTTCCGGTGATGCTTCGACGATGGTGCCTTGGCGAAGAAAAATGTGGCACCAGCA
* * * * * * *
20817704 CATGCCTGAACCCAGCATGTGTTGCCGCAACACTCGGTCTGGTCCGATCTTAGACTAGGAATAAA
196 CATGCCCGAACCCAGCATGTGCTGCTGCAACCCTCGATCCGAT--GATCTTAGACT--GAATAAA
* * * * *
20817769 CTCCATATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGG
257 CTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* *
20817834 GCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCAGGTCCCCCTCTGCGTGC
322 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGC
* * * * * *
20817899 TGCCGATCTTGCTACCGCAACCCTC-GATCTGGTGC-GATCTTAGTCTGGGAATGAACTCCGTAC
387 TGCCGATCCTGCTACCGTAACCCTCAGTTC-GATGCTGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
20817962 GCCTAAGCCAATCGACGAAACGAGCGGGTGGGCGGACGGGCAGGCACTACGCCGGCCAGAGAGAC
451 GCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGGCAGGCACTACGCCGGCCAGAGAGAC
* * * *
20818027 GGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCACATTTCTGCA
516 GGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* * *
20818092 TGCCAATGCCATTTTTATGGCTTGTACATTCATACAATGGTCCCTTAAGCCTTCATGCGAAGTTT
581 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* *
20818157 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-AGGATTTT
646 AATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGA-GATTTT
* * *
20818221 TTAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTG
710 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG
* * *
20818286 GCGTGCACAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
775 GCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
20818351 GTCCCCATTTCAGACACTGTAATGGCTACTGGCAGCAAA
840 GT--CC----C---CA---T-AT---TA---G-A-C--A
20818390 CCTTTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG-GGG
1 -C--T----T-T--AATG---------GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGG
* * * * * *
20818454 TTCAATATAAAGGCCAATTACCAGAACCCATCGCACATCATGTACGCACA-CCCTC-A-------
47 -CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAGCCCCCC
** **
20818510 --AT-GCC-G----CC---G-GTC--T-GG--T----T--T--TTCGACGATGGTGCCCCGATGA
111 CGATCGCCGGAACCCCAATGCGTCGATCGGTTTCCGGTGATGCTTCGACGATGGTGCCTTGGCGA
* * * * * * * *
20818550 AGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGGTTC
176 AGAAAAATGTGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCTGCAACCCTCGATC-CGAT-
* * * * * *
20818615 AATCTTAGAGTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
239 GATCTTAGACT--GAATAAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
20818680 CCCACGAAACGAGCGTCCGGGCACTCAACCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATTGG
302 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGG
* * * ** * * *
20818745 CCGGGTCCCCTTCTACGTGTTATCGATCCTGCTGCTGTAACCCTCAGTGTAG-T-CTGATCTTAG
367 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAGT-TCGATGCTGATCTTAG
* * * *
20818808 ACTGGGAATGAACTCCATATGCCTAGGGCAACCGACGAAACGAA----CGGGC-GG--GG-TGGC
431 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGGCAGGC
* ** *
20818865 ACTACACAAGCCAGAGAGATGGGATGCGCAAGCCGTGGAT-GATAGGGTGGCAGGTGGGTTTAGG
496 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGG
* * * * *
20818929 CACATCTTCATATTTCTACATGCCAATGCCATTTTTATAGCTTGTAAATTTATACAATCGTCCTT
561 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
20818994 TAAGCCTTCACGTGAAGTTTAATGGCGAGACAACTCATTTTCTATTTTTCACGATTTTTGAAACT
626 TAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * * *
20819059 TTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGGTAGACAT
691 TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
20819124 GATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCT-ACAACTCGAAGTGTACAAGATTTT
756 GATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
20819188 GTGACCATTTGAAAAATGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAA
821 GTGACCATTTGAAAAAAGTGT--CC----C---CA---T-AT---TA---G--AC--A
*
20819246 CCTGTAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
1 -C--T----T-T-A-A-------T--GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGG
* * * *
20819311 CCAATATAAGGGCCAAGTACCAGCACCCATCGTAAATCATGTGCGGACACCCCCCCCGA-CCGCC
47 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-G-CACACCCCCCGAGCCCCC
* * *
20819375 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTTCCGGTGATGCTTC-AGTGATGGTGCCTTG
110 CCGATCGCCGGAACCCCAATG-CGTCGATC-GGTTTCCGGTGATGCTTCGA-CGATGGTGCCTTG
*
20819439 GCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA-CC-C--T-C-
172 GCGAAGAAAAATGTGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCTGCAACCCTCGATCCG
20819498 A-G-TC-----C-G-AT---C-T-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
237 ATGATCTTAGACTGAATAAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* ** * ** * * * * *
20819547 CCCATGAAATAAGCGTGCAGGTTCTCAGCTGGCCAGAGGGGTGGGATGTGTAAGTCAGGGATCGG
302 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGG
* * * * * * *
20819612 -TGGGGCCCCTTCTGCGTGCTGTCGATCTTGCTACCGTGACCCTCAG-TCCA-GTCTGATCTTAG
367 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAGTTCGATG-CTGATCTTAG
* ** * * * ** *
20819674 ACTGGGAATGAACTCCGTATGCCTAAGGCAACCGATAAAATGAACGGGCGGGCAGGCGGGTGGGT
431 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGGCAGGC
* * * *
20819739 ACTACTCCTGCCAGAGAGACGTGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTTGGTTTAGG
496 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGG
* *
20819804 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAAAGGTCCCT
561 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
20819869 TAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACT
626 TAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* * * *
20819934 TTTTCCGGTTCGAGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGCCCCAAATTTGGTAGATGT
691 TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
20819999 GATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTT
756 GATCCTTGTATTTTTTTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
20820064 TGTTACCATTTGAAAAAAGTGTCCCCATATTAGACA
820 TGTGACCATTTGAAAAAAGTGTCCCCATATTAGACA
*
20820100 CTTTAA-GGGGGTGTCAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTA
1 CTTTAATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTA
20820164 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAGCCCCCCCGATCGCCGGAACCCCAAT
66 CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGAGCCCCCCCGATCGCCGGAACCCCAAT
* *
20820229 GCTGTCGATCAGGTTCTCCGGTGATGCTTCGACGATGGTTCCTTGGGGAAGAAAAATGTGG-ACC
130 GC-GTCGATC-GGTT-TCCGGTGATGCTTCGACGATGGTGCCTTGGCGAAGAAAAATGTGGCACC
* *
20820293 AGCACATGCCCGAGCCCAGCATGTGCTGCTGCGACCCTCGATCCGATCCGATCTTAGACTGGGAA
192 AGCACATGCCCGAACCCAGCATGTGCTGCTGCAACCCTCGATCCGAT--GATCTTAGACT--GAA
20820358 TAAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
253 TAAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * *
20820423 ACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGC
318 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGC
* * * * *
20820488 GTGCTGCCGATCCTGCTACAGTAACCCTCGGTTCGATGC-AATCTTAGACTGGGAATAAACTCTG
383 GTGCTGCCGATCCTGCTACCGTAACCCTCAGTTCGATGCTGATCTTAGACTGGGAATGAACTCCG
* * * *
20820552 TATGCCTAAGCCAACTGACGAAATGAGCGGGGCGGGTGGGCAGGCAGGCACTACGCC-GCCAGAG
448 TATGCCTAAGCCAACCGACGAAACGAAC-GGGCGGGCGGGCAGGCAGGCACTACGCCGGCCAGAG
* * *
20820616 AGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAAGTGGGTTTAGGCACATCTTCATATTTC
512 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTC
*
20820681 TGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
577 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * **
20820746 GTTTCATCGG-AAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACCCTTTGCGGTTCGAGA
642 GTTTAAT-GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGA
* * *
20820810 ATTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
706 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * *
20820875 TTTGGCATGCACAAAAAATTTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGACA
771 TTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
20820940 AAAGTGTCCCTATTTTAGACACTGTAATGGCTACTGGCAGCAAA
835 AAAGTGTCCC---------CA---T-AT---TA---G-A-C--A
*
20820984 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
1 -C--T----T-T--AA-------T--GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGG
* *
20821049 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCTCG-G-CCCCCC
47 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAGCCCCCCC
* ** * * * * ** *
20821112 GATCGGCGGAACCCCAATGCCACCGGTCAGGTTCTCAGGCGATGCTCCGACGATGGTGCCCCGAC
112 GATCGCCGGAACCCCAATG-CGTCGATC-GGTT-TCCGGTGATGCTTCGACGATGGTGCCTTGGC
* * * *
20821177 GAAGAAAAATGAGGCACCAACACAT-CCC-AAGCCCAGCATGTGCTGCCGTAACCCTCGATCCGA
174 GAAGAAAAATGTGGCACCAGCACATGCCCGAA-CCCAGCATGTGCTGCTGCAACCCTCGATCCGA
* * * * *
20821240 TCCGATCTTGGACTGAGAATGAACTCCGTAAGCTTAGACTTGGAATGAACTCCGTATGCCTAAGT
238 T--GATCTTAGACT--GAATAAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* ** *
20821305 CAACCCACGAAACAAGCGTGCGGGCGCTCAGTTGGCTAGAGGGGCGGGATGCGCAAGCCAGGGAT
299 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGAT
* * * * * *** * * * * *
20821370 TGGTCGGGTCCCTCTCTACGTGCTGCCAATCCTGCTACTACAACCCTCGGTCCGGTTC-AATCTT
364 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGTAACCCTCAGTTCGATGCTGATCTT
* * * *
20821434 AGATTTGGAATGAACTCTGTATGCCTAAGTCAACC
429 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
20821469 AATGAAATAA
Statistics
Matches: 2589, Mismatches: 316, Indels: 317
0.80 0.10 0.10
Matches are distributed among these distances:
832 3 0.00
833 10 0.00
834 150 0.06
835 42 0.02
836 2 0.00
838 1 0.00
839 1 0.00
840 1 0.00
843 1 0.00
844 3 0.00
845 1 0.00
846 1 0.00
847 1 0.00
849 1 0.00
851 1 0.00
852 1 0.00
853 3 0.00
854 1 0.00
855 1 0.00
856 161 0.06
857 237 0.09
858 43 0.02
859 8 0.00
860 95 0.04
861 391 0.15
862 31 0.01
863 2 0.00
864 3 0.00
865 3 0.00
866 354 0.14
867 90 0.03
868 7 0.00
869 2 0.00
870 8 0.00
871 7 0.00
872 2 0.00
873 5 0.00
874 45 0.02
875 228 0.09
876 13 0.01
877 44 0.02
878 1 0.00
879 5 0.00
880 3 0.00
881 6 0.00
882 2 0.00
883 4 0.00
884 1 0.00
885 2 0.00
887 1 0.00
889 2 0.00
890 7 0.00
891 80 0.03
892 4 0.00
893 61 0.02
894 2 0.00
900 1 0.00
901 301 0.12
902 11 0.00
903 6 0.00
904 85 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (855 bp):
CTTTAATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAGCCCCCCCGATCGCCGGAACCCCAATG
CGTCGATCGGTTTCCGGTGATGCTTCGACGATGGTGCCTTGGCGAAGAAAAATGTGGCACCAGCA
CATGCCCGAACCCAGCATGTGCTGCTGCAACCCTCGATCCGATGATCTTAGACTGAATAAACTTC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC
GATCCTGCTACCGTAACCCTCAGTTCGATGCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGCCAACCGACGAAACGAACGGGCGGGCGGGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGG
CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA
TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
ACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATATTAGACA
Found at i:20821846 original size:26 final size:26
Alignment explanation
Indices: 20821810--20821862 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20821800 CCAATTTGAT
*
20821810 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20821836 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20821862 C
1 C
20821863 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20823548 original size:26 final size:26
Alignment explanation
Indices: 20823519--20823568 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20823509 GTCCGATCTG
*
20823519 AGACTAGGAATGAACTCCGCATGCTT
1 AGACTAGAAATGAACTCCGCATGCTT
*
20823545 AGACTAGAAATGAACTCCGTATGC
1 AGACTAGAAATGAACTCCGCATGC
20823569 CTAAGTCAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (26 bp):
AGACTAGAAATGAACTCCGCATGCTT
Found at i:20824436 original size:26 final size:26
Alignment explanation
Indices: 20824400--20824450 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
20824390 CTGATTTGAT
20824400 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20824426 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
20824451 ACCTCAATCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20825343 original size:26 final size:26
Alignment explanation
Indices: 20825307--20825357 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
20825297 AGTCCCATCT
*
20825307 TAGACTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCATATGCA
* *
20825333 TAGAGTGGGAATGAATTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
20825358 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCA
Found at i:20825586 original size:905 final size:903
Alignment explanation
Indices: 20823430--20829113 Score: 6064
Period size: 967 Copynumber: 6.3 Consensus size: 903
20823420 CCCCCCGATC
* * *
20823430 GTGATGGTGCCCC-GACGAAGAAAAATGCCGCACCATCACATGCTCGAGCCCAGCATGTGCTGCC
1 GTGATGGTGCCCCGGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * * *
20823494 ACAACCCTCGGTCCAGTCCGATCTGAGACTAGGAATGAACTCCGCATGCTTAGACTAGAAATGAA
65 GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * ** *
20823559 CTCCGTATGCCTAAGTCAGCCCACGAAGCGAGTGTGCGGGCACTCAGCCTACCAGAGGGGCGGAA
130 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGA
* * * * ** * * **
20823624 TACGCAAGCCGGGGATCGATCGGGTCCCCATCTGCGCACTGTCGATCCTGCTGCCGCAACCCTTG
195 TGCGCAAGACGGGGATCGCTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCA
* *
20823689 GTCCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATG-A---
260 GT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGG
* * * * *
20823749 GC-GG--GCTGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGG
324 GCGGGCAGCGGGCGGGCACTTCGT-GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
20823811 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTGTAAA
388 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * *** * *
20823876 TTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTGATGTTTAGATGACTCGTTTTCTGTTTT
453 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
20823941 TCACGATTTTTGAAACTTTTTGC--TGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGG
518 TCATGATTTTTGAAACTTTTTGCGAT-TTTGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGG
**
20824004 CCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGTTATGCACAAAAAAATTCAGCTAAAAA
582 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
20824068 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
647 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
20824133 TACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
712 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * * * *
20824198 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCGATCACACATCACGTGCGCACAGCT
777 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
** * * * **
20824263 CCCCAACCCCCCCGATCATCGAAACACTAATGCCATCGGTCAGG---T-------T-CTCCG
842 CCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
* * * ** *
20824314 GTGATGGTGCCCCGGTGAAGAAAAATACGACACCAAAACATGCTCGAGCCCAGCATGTGCTGCCA
1 GTGATGGTGCCCCGGAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-
** * **
20824379 G-AACCCTCAAT-CTGATTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
65 GCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* *
20824442 ACTCCGTATACCTCAA-TCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAAAGGGGCGG
129 ACTCCGTATGCCT-AAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGG
* * * ** *
20824506 GATGCGCAA-ACCAGGGATAGGTCGGGT-CCCCTGCTGCGTGCTGCCGATCCTATTACCGTAACC
193 GATGCGCAAGA-CGGGGATCGCTCGGGTCCCCCT-CTGCGTGCTGCCGATCCTGCTACCGCAACC
* * * *
20824569 CTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTATA-ACAACCGATGAAACAA
256 CTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA-AGCCAACCGACGAAACGA
* * * *
20824633 ATGGGCGGGCAGGTGGGCGGGCACTAT-GCCGGCCAAAGAGATGGGATGCGCAAGCCGTGGATCG
320 ACGGGCGGGCA-GCGGGCGGGCACT-TCG-TGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCG
* *
20824697 ATAGGGTGGTAGGTGCGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGCT
382 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
*
20824762 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTT
447 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
*
20824827 TATTTTTCACGATTTTTGAAACTTTTTGCGATTTTG-GATTTTTTAAAATTTTTTCGAAAGGATT
512 TATTTTTCATGATTTTTGAAACTTTTTGCGATTTTGAGATTTTTTAAAATTTTTTCGAAAGGATT
*** * * *
20824891 TTTGGCCATGAACTTAGTAGACGGGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCT
577 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* *
20824956 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTACAGACACTTTA
642 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * *
20825021 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGGTCTTTAATGGGGTGTGAGTTCTTGAGGT
707 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
20825086 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCA
772 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * * *
20825151 CACCCCCCCCGGCCCCCCCGATCGCCGGAACCCTAATGCCACCGGTCAGGTTCTCCGACGATGCT
837 CA-CCCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
20825216 CCG
901 CCG
* * **
20825219 GTGATGGTGCCCCGGAGAAGAAAAATGCAGCACCAGCACATGCCCGAACCCAGCATGTGCTATCG
1 GTGATGGTGCCCCGGAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * * *
20825284 CAACCCGCTGTCCAGTCCCATCTTAGACTGGGAATGAACTCCGTATGCATAGAGTGGGAATGAAT
66 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
20825349 TCCATATGCCTAAGTCAACCCACAAAACGAGCATGCGGTCACTCAGCCGGCCAGAGGGGCGGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGAT
* * * ** *
20825414 GTGCAAGATGGGGATCGACT-GGGTCCCCCTCTACGTGCTGCCGATCCTGCTATTGTAACCCTCA
196 GCGCAAGACGGGGATCG-CTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCA
* * * *
20825478 GTCTGGTCTGATCTTAGACTTGGAATGAACTCTGTATGCCTAAGCCAACCAACGAAACGAACGGG
260 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGG
* * * * *
20825543 CGGGTGAGCGGGCAGGCACTTTCGTGGCCAGAGAGACGGGATGCGCAAGCCATGGATTGATAGGG
325 CGGG-CAGCGGGCGGGCAC-TTCGTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * * * *
20825608 TGGTAGCTGGGTTTTGGCACATCTTCATATTTCTACGTGCCACTACCATTTTTATGGCTTGTAAA
388 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
20825673 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
453 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
20825738 TCATGATTTTTGAAACTTGTTGCGA-TTTGAGATTTTTTAAAA-TTTTTCCAGAAGGATTTTTGG
518 TCATGATTTTTGAAACTTTTTGCGATTTTGAGATTTTTTAAAATTTTTTCGA-AAGGATTTTTGG
* * * **
20825801 CCCCAAACTTGGTATATGTGATCCTTGTATTTTTCGGTTCAGG-AGGTTTTA-AAATTTTTTCGA
582 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTT---TT-TGGCA---TGCACAAA--------A
** ** ** * * **
20825864 AAGGAGTTTTGGCCCCAAAGTTGGCAGACGTGATCCTTGTATTGTTGTTGGCATGCACAAAAAAA
632 AA--A--TTCAG-CTAAAAACT--C-GAAGTG-TACAAG-ATT-TTG-T-G-A--C-C------A
* *** ** * ** **
20825929 TTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGAC-CATTTGAAAAAAGTGTCCCCATTTCAG
674 TT----T--GAAA--AAAGTGT-CCCCA-TTTCAGACAC-TTT-----AA-TGGCTAC-TGGCAG
* * * * * * ***
20825993 ACACTTTAATTGCTACTGGCAAAAAACTTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTCAGT
721 -CA----AA---C--CT-G--TAAAA--TCTCAAAT-GC---T-CT-TTAAGGGGGTGTG-AGTT
** * * *
20826057 -TCTTGAGGTT--TGATGAGGGATA-GGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCAC
764 CTCGAG-GTTTGATGA-G-GGA-TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
20826118 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCT
825 ATCATGTGCGCACACCCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCT
20826182 CCGACGATGCTCC-
890 CCGACGATGCTCCG
* * * * * * **
20826195 --GA-------CCGGCA-AAGAAAAATGTGGCATCAGCATATGCCTGAGCCCAGCATGCGTTGTT
1 GTGATGGTGCCCCGG-AGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
*** *
20826250 GCAATGTTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
65 GCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
*
20826315 CTCCGTATGCCTCAA-TCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAAAGGGGCGGG
130 CTCCGTATGCCT-AAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGG
* * * * *
20826379 ATGCGCAA-ACCAGGGATAGGTCGGGT-CCCCTGCTGCGTGCTGCCGATCCTGTTACCGTAACCC
194 ATGCGCAAGA-CGGGGATCGCTCGGGTCCCCCT-CTGCGTGCTGCCGATCCTGCTACCGCAACCC
* * * *
20826442 TCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTATA-ACAACCGAAGAAACAAA
257 TCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA-AGCCAACCGACGAAACGAA
* * *
20826506 TGGGCGGGCAGGTGGGCGGGCACTAT-GCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGA
321 CGGGCGGGCA-GCGGGCGGGCACT-TCG-TGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
20826570 TAGGGTGGTAGGTGCGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGCTT
383 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
20826635 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
448 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
20826700 ATTTTTCATGATTTTTGAAACTTGTTGCGA-TTCGAGATTTTTTTAAA-TTTTTCCAGAAGGATT
513 ATTTTTCATGATTTTTGAAACTTTTTGCGATTTTGAGATTTTTTAAAATTTTTTCGA-AAGGATT
* *
20826763 TTTGGCCCCAAACTTGGTATATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
577 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
*
20826828 AAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
642 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
20826893 GTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGT
707 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
20826958 TTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCCA-CACCCATCGCACATCATGTGCGC
772 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGCGC
* * *
20827022 ACA-CCCCCTGACCCCCCCGATCACCGAAACCCCAATGCCGCAGGTCAGGTTCTCCGACGATGCT
836 ACACCCCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
20827086 -C-
901 CCG
* *
20827087 -TGA--------C---GAAGAAAAATACGGCACCAGCACATGCCCGACCCCAGCATGTGCTGCCG
1 GTGATGGTGCCCCGGAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * * * *
20827140 TAACCCTTGGTCCGGTCCGATCTTAGAGTGGGAATGAACTCCATATGCTTAGACTAGGAATGAAC
66 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
20827205 TCCGTATCCCTAAGTCAACCCGCGAAACGAGCGTGCGGGCGCTCAGCTGACCAGAGGGGCGGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGAT
* * * ** * * * **
20827270 ACGCAAGTCGAGGATCGGC-CGATTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCTTG
196 GCGCAAGACGGGGATC-GCTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCA
* * *
20827334 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAATGAACGGG
260 GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGG
** * * * * *
20827399 CGGGCA-C-TAC--G--C--C--GGCCAGAGAGATGGGATGCGCGAGCCGTAGATCAATA-GGTG
325 CGGGCAGCGGGCGGGCACTTCGTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * * * ** *
20827453 GTAGGTTGGTTTAGGCAAATCTTCATATTTCTGCTTTCCAAAGAGATTTTTATGGCTTGTAAACT
390 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * * *
20827518 CATACAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGAAAGACGACTCGTTCTCTATTTTTC
455 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * *
20827583 ATGATTTTTGAAACTTTTTTCGGTTCTG-GATTTTTTAAAATTTTTTCGAAGGGGA-TTTTGGCC
520 ATGATTTTTGAAACTTTTTGCGATTTTGAGATTTTTTAAAATTTTTTCGAA-AGGATTTTTGGCC
* * ** * *
20827646 CCAAACTTGGTAGCCGTGATCCTTGTATTTTTTTTGGGACACACAAAAAAATTCAACAAAAAACT
584 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
20827711 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
649 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * * * *
20827776 CTGGTAGCAAACTTGGAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGAAGA
714 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
*
20827841 GGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCC
779 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
** * * * * * * * *
20827906 TTCGG-CCCCCCGATCGCCGGAACCGCAATGCTGTCGGTCAAGTTCTCCGGCGATGCTTCG
843 CCCGGCCCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
* * * * * * ** *
20827966 GCGATGGTGCCTCGGTGAAGAAAAATACGGCACCAGCAAATGCCCGAGCCCAGTATGCACTGCTG
1 GTGATGGTGCCCCGGAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
20828031 TAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
66 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* **
20828096 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-AGCGCAGTGGGCCAGAGGGGCGGGA
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCA-CTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * * * *
20828160 TGAGCAAGCCGAGGATCGAC-CGGTTCCCCCTCTGCGCGCTGTCGATCCTTCTGCCGCAAACCTT
195 TGCGCAAGACGGGGATCG-CTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTC
* * *
20828224 GGTCCT-GTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAATCCAACCGACGAAACG-A--
259 AGT-CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACG
* * *
20828285 -GC-GG--TCGGGCGGGCACTACGTCCGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
323 GGCGGGCAGCGGGCGGGCACTTCGT-GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
20828346 GTGGTAGGTGGGTTTAGGCAAATTTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
387 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
** *
20828411 ATTCATACAACAGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
452 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * * * * *
20828476 TTCATGA-TTTTCAAA-TTTTTACG-GTTCGGGATTTTTTAAAATTTTTTTAGAAA-GAGTTTTC
517 TTCATGATTTTTGAAACTTTTTGCGATTTTGAGATTTTTTAAAA-TTTTTTCGAAAGGATTTTTG
* ** *
20828537 ACTGCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCATCTAAAA
581 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
20828602 ACTCGAAGAGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGG
646 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
20828667 CTACGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
711 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * *
20828732 TGAGGGACAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATC-TGTGCGCATACC
776 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* ** ** * ** *
20828796 ACCCCGGCCTGCCCGATCGTCGAAACCCCAATGCTGGTGGTCAGGTTCTCCAACGATGCTCCG
841 CCCCCGGCCCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
** * **
20828859 ACGATGGTGCCCCGGCGAAGAAAAAT--GGCACCAGCACATGCCC-AGCCCAGCATGTGCTATCG
1 GTGATGGTGCCCCGGAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
*** * *
20828921 CAACCCTCGGTTTGGTCCGATCTTAGACTTGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
66 CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
20828986 TTCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGAT
131 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGAT
* * * * * *
20829051 GAGCAAG-CTGGGGATCGGTCGGGTCCCCATCTGCATGCTACCGATCCTGCTACCACAACCCTC
196 GCGCAAGAC-GGGGATCGCTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTC
20829114 GGTCCAGTCT
Statistics
Matches: 4039, Mismatches: 566, Indels: 384
0.81 0.11 0.08
Matches are distributed among these distances:
875 3 0.00
876 393 0.10
877 88 0.02
878 5 0.00
880 2 0.00
882 1 0.00
883 8 0.00
884 253 0.06
885 6 0.00
886 4 0.00
887 2 0.00
888 7 0.00
889 253 0.06
890 184 0.05
891 279 0.07
892 258 0.06
893 415 0.10
894 297 0.07
895 51 0.01
896 124 0.03
897 1 0.00
898 1 0.00
899 6 0.00
901 4 0.00
903 1 0.00
904 18 0.00
905 512 0.13
906 13 0.00
908 3 0.00
909 4 0.00
910 3 0.00
911 2 0.00
913 2 0.00
914 4 0.00
915 4 0.00
916 1 0.00
918 3 0.00
920 1 0.00
921 9 0.00
922 6 0.00
923 12 0.00
925 4 0.00
926 5 0.00
927 4 0.00
928 3 0.00
929 3 0.00
930 1 0.00
931 4 0.00
932 1 0.00
934 1 0.00
935 1 0.00
937 1 0.00
938 1 0.00
940 1 0.00
941 4 0.00
942 1 0.00
943 3 0.00
944 3 0.00
945 4 0.00
946 5 0.00
947 4 0.00
949 10 0.00
950 6 0.00
951 8 0.00
952 1 0.00
954 3 0.00
956 2 0.00
957 4 0.00
958 4 0.00
959 2 0.00
961 2 0.00
962 3 0.00
963 4 0.00
964 3 0.00
966 11 0.00
967 524 0.13
968 6 0.00
969 1 0.00
971 4 0.00
973 5 0.00
974 2 0.00
977 63 0.02
978 8 0.00
979 64 0.02
980 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
GTGATGGTGCCCCGGAGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGAT
GCGCAAGACGGGGATCGCTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAG
TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGC
GGGCAGCGGGCGGGCACTTCGTGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
TGATTTTTGAAACTTTTTGCGATTTTGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCC
AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
GGCCCCCCCGATCACCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
Found at i:20826301 original size:26 final size:26
Alignment explanation
Indices: 20826272--20826324 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20826262 CCAATCCGAT
20826272 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20826298 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20826324 C
1 C
20826325 CTCAATCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20828081 original size:26 final size:26
Alignment explanation
Indices: 20828052--20828104 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20828042 CCGGTCTGAT
20828052 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20828078 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20828104 C
1 C
20828105 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20828891 original size:891 final size:884
Alignment explanation
Indices: 20825830--20829135 Score: 4185
Period size: 876 Copynumber: 3.7 Consensus size: 884
20825820 GATCCTTGTA
* ** * * *
20825830 TTTTTCGGTTCAGGAGGTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAGTTGGCAGACGT
1 TTTTTCGGTTCGGGATTTTTTAAAATTTTTTAGAAA-GAGTTTTGGCCCCAAACTTGGTAGACGT
* * * *
20825895 GATCCTTGTATTGTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTT
65 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* ** *
20825960 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAAAAAACTTGTA
130 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
20826025 AAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTTGAGGTTTGATGAGGGATAGGGG-CCAATA
195 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATA
*
20826089 GAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACC
260 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACC
* *
20826154 GAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-C--CGACCGGCAAAGAAAAATGTGG
325 GAAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGACCGGCGAAGAAAAA--TGG
* * * * * *** **
20826216 CATCAGCATATGCCTGAGCCCAGCATGCGTTGTTGCAATGTTCGGTCCAATCCGATCTTAGACTG
388 CACCAGCACATGCCCGAGCCCAGCATGCGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTG
*
20826281 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTCAA-TCAACCCACGAAACG
453 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCT-AAGTCAACCCACGAAACG
* * * * *
20826345 AGCGTGCGGGCA-CTCAGCCGGCCAAAGGGGCGGGATGCGCAAACC-AGGGATAGGTCGGGT-CC
517 AGCGTGCGGG-AGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGA-GGATCGGCCGGGTCCC
* * *
20826407 CCTGCTGCGTGCTGCCGATCCTGT-TACCGTAACCCTCAGTCTGGTCCGATCTTAGACTGGGAAT
580 CCT-CTGCGTGCTGCCGATCCT-TCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAAT
* * * * * *
20826471 GAACTCTGTATGCCT-ATAACAACCGAAGAAACAAATGGGCGGGCAGGTGGGCGGGCACTATGCC
643 GAACTCCGTATGCCTAAT-CCAACCGACGAAAC----GAGC-GG-A--CGGGCGGGCACTACGCC
* *
20826535 GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCGTTTAGGCACATCTT
699 GGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTT
*
20826600 CTTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
764 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
*
20826665 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
829 CACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * * * * * *
20826721 TTGTTGCGATTCGAGATTTTTTTAAATTTTTCCAGAAGGATTTTTGGCCCCAAACTTGGTATATG
1 TT-TTTCGGTTCGGGATTTTTTAAAATTTTT-TAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
*
20826786 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACGCGAAGTGTACAAGATT
64 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
20826851 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTGT
129 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
20826916 AAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAAT
194 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAAT
* *
20826981 ATAAGGGCCAAGTACCCA-CACCCATCGCACATCATGTGCGCACACCCCCTGACCCCCCCGATCA
259 ATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCA
* * * * *
20827045 CCGAAACCCCAATGCCGCAGGTCAGGTTCTCCGACGATGCTCTGACGA----AGAA-AAATACGG
323 CCGAAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGACCGGCGAAGAAAAATGG
* * * * * *
20827105 CACCAGCACATGCCCGACCCCAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGAGTG
388 CACCAGCACATGCCCGAGCCCAGCATGCGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTG
* * *
20827170 GGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATCCCTAAGTCAACCCGCGAAACGA
453 GGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * **
20827235 GCGTGCGGGCGCTCAGCTGACCAGAGGGGCGGGAT-ACGCAAGTCGAGGATCGGCCGATTCCCCC
518 GCGTGCGGGAGCTCAGCCGGCCAGAGGGGCGGGATGA-GCAAGCCGAGGATCGGCCGGGTCCCCC
* * * **
20827299 TCTGCGTGCTGCCGAT-CTTGCTGCTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAA
582 TCTGCGTGCTGCCGATCCTT-CTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAA
* * * * *
20827363 CTCCATATGCCTAAGCCAACCGACGAAATGA----ACGGGCGGGCACTACGCCGGCCAGAGAGAT
646 CTCCGTATGCCTAATCCAACCGACGAAACGAGCGGACGGGCGGGCACTACGCCGGCCAAAGAGAC
* * * * *
20827424 GGGATGCGCGAGCCGTAGATCAATA-GGTGGTAGGTTGGTTTAGGCAAATCTTCATATTTCTGCT
711 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCA
* * ** * *
20827488 TTCCAAAGAGATTTTTATGGCTTGTAAACTCATACAATGGTCCTTTAAGCCTTCACATGAAGTTT
776 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
* *
20827553 CATGGAAAGACGACTCGTTCTCTATTTTTCATGATTTTTGAAAC
841 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * *
20827597 TTTTTTCGGTTCTGGATTTTTTAAAATTTTTTCGAAGGGGATTTTGGCCCCAAACTTGGTAGCCG
1 -TTTTTCGGTTCGGGATTTTTTAAAATTTTTTAGAAAGAG-TTTTGGCCCCAAACTTGGTAGACG
* ** * *
20827662 TGATCCTTGTATTTTTTTTGGGACACACAAAAAAATTCAACAAAAAACTCGAAGTGTACAAGATT
64 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
20827727 TTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACTTGG
129 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
20827792 AAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGCCCAAT
194 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAAT
*
20827857 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACATCCCCTTCGG-CCCCCCGATC
259 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCGGCCCCCCCGATC
* * * * * * * * *
20827921 GCCGGAACCGCAATGCTG-TCGGTCAAGTTCTCCGGCGATGCTTCGGCGATGGTGCCTCGGTGAA
322 ACCGAAACCCCAATGCCGCT-GGTCAGGTTCTCCGACGATGC-TC--CGA---CGAC-CGGCGAA
* * * * *
20827985 GAAAAATACGGCACCAGCAAATGCCCGAGCCCAGTATGCACTGCTGTAACCCTCGGTCCGGTCTG
379 GAAAAAT--GGCACCAGCACATGCCCGAGCCCAGCATGCGCTGCTGCAACCCTCGGTCCGGTCCG
*
20828050 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
442 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* ** *
20828115 CCACGAAACGAGCGTGCGGGAGCGCAGTGGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATCGAC
507 CCACGAAACGAGCGTGCGGGAGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATCGGC
* * * * * *
20828180 CGGTTCCCCCTCTGCGCGCTGTCGATCCTTCTGCCGCAAACCTTGGTCCT-GTCCAATCTTAGAC
572 CGGGTCCCCCTCTGCGTGCTGCCGATCCTTCTACCGCAACCCTCGGT-CTGGTCCAATCTTAGAC
*
20828244 TGGGAATGAACTCCGTATGCCTAATCCAACCGACGAAACGAGCGGTCGGGCGGGCACTACGTCC-
636 TGGGAATGAACTCCGTATGCCTAATCCAACCGACGAAACGAGCGGACGGGCGGGCACTACG-CCG
*
20828308 GCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATTTTC
700 GCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTC
* **
20828373 ATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACAGTCCCTTAAGCCTTC
765 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
20828438 ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTCAAA-
830 ACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
** **
20828491 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTTAGAAAGAGTTTTCACTGCAAACTTGGTAGACG
1 TTTTT-CGGTTCGGGATTTTTTAAAA-TTTTTTAGAAAGAGTTTTGGCCCCAAACTTGGTAGACG
* *
20828556 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCATCTAAAAACTCGAAGAGTACAAGATT
64 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
20828621 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACGGGCAGCAAACCTGT
129 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
20828686 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGACAAGGGG-CCAA
194 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TAGGGGACCAA
* * **
20828750 TATAAGGGCCAAGTACCAGCACCCATTGCACATC-TGTGCGCATACCACCCCGGCCTGCCCGATC
258 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCCGATC
** * * *
20828814 GTCGAAACCCCAATGCTGGTGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCGGCGAAG
322 ACCGAAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGA-------CCGGCGAAG
* * **
20828879 AAAAATGGCACCAGCACATGCCC-AGCCCAGCATGTGCT-ATCGCAACCCTCGGTTTGGTCCGAT
380 AAAAATGGCACCAGCACATGCCCGAGCCCAGCATGCGCTGCT-GCAACCCTCGGTCCGGTCCGAT
* *
20828942 CTTAGACTTGGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
444 CTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
20829007 ATGAAACGAGTGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGAGCAAGCTGGGGATCGGTCG
509 ACGAAACGAGCGTGCGGGAGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATCGGCCG
* * * * * ** *
20829072 GGTCCCCATCTGCATGCTACCGATCCTGCTACCACAACCCTCGGTCCAGTCTAATCTTAGACTG
574 GGTCCCCCTCTGCGTGCTGCCGATCCTTCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTG
20829136 AACTCCGTAT
Statistics
Matches: 2085, Mismatches: 271, Indels: 119
0.84 0.11 0.05
Matches are distributed among these distances:
875 8 0.00
876 398 0.19
877 96 0.05
878 3 0.00
879 1 0.00
880 2 0.00
883 1 0.00
885 1 0.00
887 2 0.00
888 7 0.00
889 232 0.11
890 205 0.10
891 274 0.13
892 234 0.11
893 175 0.08
894 248 0.12
895 69 0.03
896 129 0.06
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (884 bp):
TTTTTCGGTTCGGGATTTTTTAAAATTTTTTAGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCG
AAACCCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCCGACGACCGGCGAAGAAAAATGGCAC
CAGCACATGCCCGAGCCCAGCATGCGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
ATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TGCGGGAGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATCGGCCGGGTCCCCCTCTG
CGTGCTGCCGATCCTTCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCG
TATGCCTAATCCAACCGACGAAACGAGCGGACGGGCGGGCACTACGCCGGCCAAAGAGACGGGAT
GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTGCATGCCA
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
Found at i:20829231 original size:179 final size:179
Alignment explanation
Indices: 20828955--20829313 Score: 524
Period size: 179 Copynumber: 2.0 Consensus size: 179
20828945 AGACTTGGAA
* * * ** *
20828955 TGAACTCCATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGTGT
1 TGAACTCCATATGCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
* ** *
20829020 GCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGAGCAAG-CTGGGGATCGGTCGGGT-CCCCATCT
66 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGTC-GACGATCGATCGGGTGCCCC-TCT
*
20829083 GCATGCTACCGATCCTGCTACCACAACCCTCGGTCCAGTCTAATCTTAGAC
129 GCATGCTACCGATCCTGCTACCACAACCCTCGGTCCAGTCCAATCTTAGAC
* *
20829134 TGAACTCCGTATGCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT
1 TGAACTCCATATGCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
*
20829199 GCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGAGCAAGTCGACGATCGATCGGGTGCCCCTCTGC
66 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGTCGACGATCGATCGGGTGCCCCTCTGC
* * **
20829264 ATGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGAC
131 ATGCTACCGATCCTGCTACCACAACCCTCGGTCCAGTCCAATCTTAGAC
20829313 T
1 T
20829314 AGGAATGAAC
Statistics
Matches: 160, Mismatches: 18, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
179 155 0.97
180 5 0.03
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (179 bp):
TGAACTCCATATGCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGTCGACGATCGATCGGGTGCCCCTCTGC
ATGCTACCGATCCTGCTACCACAACCCTCGGTCCAGTCCAATCTTAGAC
Found at i:20830054 original size:26 final size:26
Alignment explanation
Indices: 20830014--20830066 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20830004 TTGGTCCGAT
* *
20830014 CTTAGACTGGAAATGAACTTCGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
*
20830040 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGAAATGAACTCCGTATG
20830066 C
1 C
20830067 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGAAATGAACTCCGTATG
Found at i:20830922 original size:26 final size:26
Alignment explanation
Indices: 20830893--20830945 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20830883 CTGGTCCGAT
20830893 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20830919 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20830945 C
1 C
20830946 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20831830 original size:26 final size:26
Alignment explanation
Indices: 20831794--20831846 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20831784 CCGGTTCGAT
*
20831794 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTATGTATG
20831820 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
20831846 C
1 C
20831847 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:20831983 original size:901 final size:891
Alignment explanation
Indices: 20829134--20832700 Score: 4735
Period size: 898 Copynumber: 4.0 Consensus size: 891
20829124 AATCTTAGAC
* * *
20829134 TGAACTCCGTATGCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGT
1 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
* * * * **
20829199 GCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGAGCAAGTCGACGATCGATCGGGTGCCCC-TCTG
66 GCAGGCGCTCAGCCGGCCAGAGGGGCGAGATGAGCAAGCCGGGGATCGATCGGGT-CCCCTTCTG
* * * * **
20829263 CATGCTACCGATCTTGCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTTTG
130 CATGCTACCGATCCTACTGCCACAACCCTCGATCTGGTCTAATCTTAGACTAGGAATGAACTCCG
* * * *** *
20829328 GATGCCTAAGCCAATCGACGAAACGAGCGGGAGGGCGGGCACTTTGTCC-GCCAGAGAGATGGGA
195 TATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACGACG-CCGGCCAGAGAGACGGGA
* ** * * *
20829392 TACGCAAGCCGTGGATCGATAACGTGGTTGGTGGGATTAGGCACATCTTCATATTTTTGCATGCC
259 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
20829457 AATGCCATTTTTATTGG-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
324 AATGCCATTTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
20829521 GACAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGATTCGGATTTTTTAAA
388 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTACGGTTCGGATTTTTTAAA
* *
20829586 ATTTTTTCGAAAGGAGTTTTGCCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
453 ATTTTTTCGGAAGGAGTTTTGCCCC-AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
*
20829651 CACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
517 CACAAAAAACATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
20829716 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGG
582 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
20829781 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
647 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
20829846 CGAACATCATCTGCGCACACCCCCTCGGCCCGTCCAATCGTCAGAACCCCAATGCCGCCGGTTAG
712 CGCACATCATCTGCGCACACCCCCTCGGCCC-CCCGATCGTCGGAACCCCAATGCCGTCGGTTAG
* * * **
20829911 GTTCTCTGGCGATGCTCCGACGATGGTGCCCCAACGAAG-AAAATACGGCACCAGCACATGCCC-
776 GTTCT-TCG-GATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCG
* * *
20829974 AGCCCAGCATGTGCTACCGTAACCCTCGGTTTGGTCCGATCTTAGACTGGAAA
839 AGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
* * * ** *
20830027 TGAACTTCGTATGCTTAAACTGGGAATGAACTCCGTATGCCTAAGTCAACCGATGAAACGAGCGC
1 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
* * * * *
20830092 GCGGGCGCTCAGGCGGCCAGAGGGGTG-GAATGTA-CAGGCCGGGGATC--T-GGGTCCCCCTCT
66 GCAGGCGCTCAGCCGGCCAGAGGGGCGAG-ATG-AGCAAGCCGGGGATCGATCGGGTCCCCTTCT
* * *** ** * * * *
20830152 GCGTGGTGTTGATCCTACTGCTGCAACCCTCGGTCCT-GTTTGATCTTAGACTGGGAATGAACTC
129 GCATGCTACCGATCCTACTGCCACAACCCTCGAT-CTGGTCTAATCTTAGACTAGGAATGAACTC
* *
20830216 CGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGTGGGCACGACGCCGGCCAGAGAGACGGG
193 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACGACGCCGGCCAGAGAGACGGG
* * *
20830281 ATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
258 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
20830346 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
323 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
20830411 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAGCTTTTTGCAGTTCGGGA-TTTTTAA
388 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTACGGTTC-GGATTTTTTAA
* **
20830475 AATTTTTTCGGAAGGAGTTTTGCCCCAAACTTGGTAGACATTATCCTTGTATTTTTGTTCTCATG
452 AATTTTTTCGGAAGGAGTTTTGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
* * *
20830540 CATAAAAAACATCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCTTTTGAAAAAAGTGTCC
517 CACAAAAAACATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
20830605 CGATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
582 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
20830670 GTGTGAG-T-TC------T--TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
647 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * * * * * *
20830725 TGCACATTATGTGTGCACACCCCCTCGGCCCCCCGATCGTTGGATCCTCAATGTCGTCGATCAGG
712 CGCACATCATCTGCGCACACCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTTAGG
* * * * * ** *
20830790 TTCTCTAGCGATGCT-TGGCGATAGTGCCCCGGTGAAGAAAAATGTGAAACCAGCATATGCCCGA
777 TTCT-TCG-GATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGA
*
20830854 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
840 GCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
*
20830906 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-AGAAACAAGCG
1 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACA-AAACGAGCG
* * * *
20830970 TGCAGGCGCTCAGCCAGCCAGAGGGG-TAGGATGAGCAAGCTGGGGATCGGTCGGGTCCCTCTT-
65 TGCAGGCGCTCAGCCGGCCAGAGGGGCGA-GATGAGCAAGCCGGGGATCGATCGGGTCCC-CTTC
* * * * * * *
20831033 TGCATGCTACCGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGATTATGAGTGAACTC
128 TGCATGCTACCGATCCTACTGCCACAACCCTCGATCTGGTCTAATCTTAGACTAGGAATGAACTC
* *
20831098 CGTATGCCTAAGCCAACTGACGAGACTAGCGGGCGGGCGGGCGGGCACGACGCCGGCCAGAGAGA
193 CGTATGCCTAAGCCAACCGACGA-A--A-CGAGCGGGCGGGCGGGCACGACGCCGGCCAGAGAGA
* *
20831163 CGGGATGTGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
254 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
** *
20831228 ATTTCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTT
319 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
20831293 TCATGGCAAGACGTCTCCTTTTCTATTTTTCATGATTTTTGAAACCTTTTACGGTTCAGGATTTT
384 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTACGGTTC-GGATTTT
* * * **
20831358 TTTAAATTTTTTCGGAAGGATTTTTGGACCCAAACTTTTTAGACATGATCCTTGTATTTTTGTTG
448 TTAAAATTTTTTCGGAAGGAGTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
* * *
20831423 GCATGCATAAAAAACGTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
512 GCATGCACAAAAAACATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
20831488 TGTCCCCATTTAAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
577 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
20831553 AGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
642 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * *
20831618 CCCATCGCACATCATGTGTGTACACCCCCCCCGGTACCCCCGATCGTCGGAACCCCAATACCGTC
707 CCCATCGCACATCATCTGCGCACA-CCCCCTCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTC
*
20831683 GGTTAGGTTCTTCGGTAATGCTCCGATGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACA
770 GGTTAGGTTCTTCGG--ATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACA
* * * * *
20831748 TCCCCGAGCCCAGCATGTGCTGCCATAAACCTCGGTCCGGTTCGATCTTAGACTGGGAA
833 TGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
* ** *
20831807 TGAACTCTGTATGCTTAGACTGGGAATGAACTATGTATGCCTAAGTCAACCCACAAAACGAGTGT
1 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
* * *
20831872 GCAGGCGCTTAGCCGGCCAGAGGGGCGAGATGAGCAAGCCGGGGTTCGATCGGGTCCCCTTTTGC
66 GCAGGCGCTCAGCCGGCCAGAGGGGCGAGATGAGCAAGCCGGGGATCGATCGGGTCCCCTTCTGC
* * *
20831937 ATGCTACCGATCCTACTGCCATAACCCTCGATCTGGTATAATCTTAGACTGGGAATGAACTCCGT
131 ATGCTACCGATCCTACTGCCACAACCCTCGATCTGGTCTAATCTTAGACTAGGAATGAACTCCGT
* * * * * *
20832002 ATGCCTAAGCCAACCAACGAAATGAGCGGGCGGGCGGGCACTATGTCGGCCAGAAAGACGGGATG
196 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACGACGCCGGCCAGAGAGACGGGATG
* * * * * *
20832067 CACAAGTCATGGATCGATACGATGGTAGGTGGGTTTAGGCACATCTTTATA-TTCATGCATGCCA
261 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-TGCATGCCA
*
20832131 ATGCCATCTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
325 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
20832196 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-CTCTTTGCGGTTTGAGATTTTTTTAA
390 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCT-TTTACGGTTCG-GA-TTTTTTAA
* * * *
20832260 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGGTCCTTGTATTTTTTTTGTCAT
452 AATTTTTTCGGAAGGAGTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
* * * *
20832325 GCACAAAAAAAATCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAACAAAGTGTC
516 GCACAAAAAACATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
20832390 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAACATCTCAAATGCTCTTTAAGGG
581 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
20832455 GGTGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCA
646 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* ** * *
20832520 TCGCAAATCATCTGCGCACACCCCCTCGGCCCCCCGATCGTCGGAACCCCCGTCGTCG-CTGGTC
711 TCGCACATCATCTGCGCACACCCCCTCGGCCCCCCGATCGTCGGAACCCCAAT-GCCGTC-GGTT
* * * * ** ** *
20832584 AGGTTCTCCAGCGATGCTGCGACGATGATGCCCTGGCGAAGAAAAATACGGCAACAGCACATGCC
774 AGGTTCTTC-G-GATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCC
** * * * *
20832649 CGAGCCCAGCATGTGCTATCGCAACCGTCGGTCTGGTCTGATCTTACACTGG
837 CGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGG
20832701 TACTAAACTT
Statistics
Matches: 2340, Mismatches: 284, Indels: 96
0.86 0.10 0.04
Matches are distributed among these distances:
877 16 0.01
878 58 0.02
879 213 0.09
880 1 0.00
881 3 0.00
882 77 0.03
883 3 0.00
885 1 0.00
886 212 0.09
887 28 0.01
888 168 0.07
889 175 0.07
890 303 0.13
891 6 0.00
892 1 0.00
893 93 0.04
894 1 0.00
896 29 0.01
897 303 0.13
898 323 0.14
899 11 0.00
900 42 0.02
901 271 0.12
902 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGT
GCAGGCGCTCAGCCGGCCAGAGGGGCGAGATGAGCAAGCCGGGGATCGATCGGGTCCCCTTCTGC
ATGCTACCGATCCTACTGCCACAACCCTCGATCTGGTCTAATCTTAGACTAGGAATGAACTCCGT
ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACGACGCCGGCCAGAGAGACGGGATG
CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTACGGTTCGGATTTTTTAAAATT
TTTTCGGAAGGAGTTTTGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
AAAAACATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
CATCATCTGCGCACACCCCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCT
TCGGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAG
CATGTGCTGCCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAA
Found at i:20833451 original size:25 final size:25
Alignment explanation
Indices: 20833423--20833470 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
20833413 TCCGATCTTA
*
20833423 GACTGGGAATGAACTTCGTATGCTT
1 GACTGGGAATGAACTCCGTATGCTT
20833448 GACTGGGAATGAACTCCGTATGC
1 GACTGGGAATGAACTCCGTATGC
20833471 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (25 bp):
GACTGGGAATGAACTCCGTATGCTT
Found at i:20834349 original size:26 final size:26
Alignment explanation
Indices: 20834320--20834372 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20834310 CTGGTCCGAT
20834320 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20834346 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20834372 C
1 C
20834373 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20834893 original size:901 final size:903
Alignment explanation
Indices: 20832683--20836137 Score: 4635
Period size: 912 Copynumber: 3.8 Consensus size: 903
20832673 CCGTCGGTCT
* * * * * * * * *
20832683 GGTCTGATCTTACACTGGTACTAAACTTCGTATGCCTAAGCC-AACAGACGGAATGAGCGGGCGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAAC-GACGAAACGAGAGGGCGA
* * *
20832747 GCGGGCGGGC-GACCGCTACATCGGCCAGAAAGACGGGATGCGCAAGCCGTGAATCGATAGGGTG
65 GCGGGCGGGCGGA-CACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
20832811 GTAGGTGGGTTTAGGCACATCTTTATATTTC-AGCATGCCAATGCCACTTTTAGGGCTTGTAAAT
129 GTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
20832875 TCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
193 TCATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * *
20832940 CATGATTTTCAAAACTTTTTTC-AGTTCGGGATTTTTTAAAATTTTTTCGGAACGAGTTTTGGCC
258 CACGATTTTCAAAACTTTTTACGA-TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
20833004 CCAAGCTTGGCAGACGTGATCCCTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
322 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
20833069 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTAAGACACTTTAATGGCTA
387 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTA
* * *
20833134 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTCAAGGTTTGATGA
452 CTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
20833199 GGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATAGCACATCATGTGCGCATAGCCCC
517 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--A-----
* * * * * * *
20833264 CCCGGCCCCCCGGCCCCCCCGATTGTCGGAACCCGAATGCCTCCGGTCAGGTTCTCTGGTGATGC
575 CAC--CCCCCCGG-CCCCCCGATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGC
* * * * *
20833329 TCTGGAGATGGTGCCCCGATGAAGACAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCT
637 TCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
20833394 ACCGTAACCCTCGAACCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTT-GACTGGGAAT
702 GCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAAT
20833458 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA
767 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA
* * * * * * ** *
20833523 TGATGCGCTAGCCAGGGATCGGCCGAGTACCCCTCTGCGTGCTACCGATAGTACTGCCCCAACCC
832 GGATGCGCAAGCCGGGGATCGGCTGAGTCCCCCTCTGCGTGCTATCGATCCTACTGCCACAACCC
*
20833588 TCAGTCT
897 TCAGTCC
* * * * *
20833595 GGTTTAATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCAACGAAACGAGCA-GGC-A
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAG-AGGGCGA
* * * *
20833658 GGCGGGCGGGCGGGCACTACATCGGCCAGAGAGATGGGATGCACAAGCCGTGGATCGATAGGTTG
65 -GCGGGCGGGCGGACACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* **
20833723 CTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATT
129 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
* * * **
20833788 CATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAACACGACTCATTTTTTAACTTTC
194 CATACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
20833853 ACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGCCCC
259 ACGATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
*
20833918 AAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
324 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
20833983 AACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACT
389 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACT
* **
20834048 AGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACAAGG
454 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* **
20834113 GATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATTGTGTGCGCACA-CCCCCC
519 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
** * * * * *
20834177 GGCCCCCCGATCGTTAGAAACCTAATGCCACCGGTCCGGTTCTCCGACGATGCTCTGGCGATGGT
584 GGCCCCCCGATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCTGGCGATGGT
* * *
20834242 GCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTC
649 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
20834307 GGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
714 GATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20834372 CCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTAAGCCGGCCAGAAGGGTAGGATGCGCAAGC
779 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * *
20834437 CGGGGATCGGCTGAGTCCCCCTTTGCGTGCTATCGATCCTGCTGCCATAACCCTCAGTCC
844 CGGGGATCGGCTGAGTCCCCCTCTGCGTGCTATCGATCCTACTGCCACAACCCTCAGTCC
* * *
20834497 GGTCTGATCTTCGACTGGGAATGAACTCTGTATGCCTAAGCCAAACGACGAAATGAGAGGGCGAG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGAGGGCGAG
** * * *
20834562 CGGGTAGGCGGAAACTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGT-GATCGATAGGGTGGT
66 CGGGCGGGCGGACACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
20834626 AGGTGGGTTTAGGGACATCTTCATATTTCTACATGCCAATGCCA-TTTTATGGCTTGTAAATTCA
131 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
20834690 TACAATGGTCCCTTAACCCTTCACGTGAAGTTTAATGGCAAGACGACTCTTTTTCTATTTTTCAA
196 TACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
20834755 GATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCTCTAA
261 GATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * * *
20834820 ACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAGAATTCAGCTAAAAATTTGA
326 ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGA
*
20834885 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA-ACACTTTAATGGTTACT
390 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AAGACACTTTAATGGCTACT
* * * * *
20834949 AGTAGGAAAGCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGG
454 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * *
20835014 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACACATCACACATCAAGAGCGCACACCCCCCC
519 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * *
20835079 GGCCCCCTGATCGCCAGAACCCCAATGCTACCGGTCAGG---T-T--C--T-C-C-GGCGACGGT
584 GGCCCCCCGATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCTGGCGATGGT
* *
20835133 GCCCCGACGAAGAAAAAGGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
649 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* ** *
20835198 GATCCGGTCCAATCTTAGACTGGGAATGAACTAAGTATGCTTAGACTGGGAATGAACTCCGTATA
714 GATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * *
20835263 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCATAGGGGCAGGATGCACAAGT
779 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC
* * * * * * * ** * **
20835328 CGGAGATCGG-TCGGGTCCCCCTCTGTGTGTTGTTGATCCTCCTATCACAACCTTTGGTCC
844 CGGGGATCGGCT-GAGTCCCCCTCTGCGTGCTATCGATCCTACTGCCACAACCCTCAGTCC
* * * * *
20835388 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGTGCGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGAGGGCGAG
* * ** *
20835453 CAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
66 CGGGCGGGCGGACACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
20835518 AGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
131 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * *
20835583 TACAATGGTTCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCAC
196 TACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * ** ** * *
20835648 GATTTTTGAAAA-TTTTTGCGGTTCAAGATTTTTTTTTAATTTTTTTAGAAGGATTTTTGGCTCC
261 GA-TTTTCAAAACTTTTTACGATTCGAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* ** * ** * *
20835712 AAGCTCAGTACACGTGAGACTCGTATTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCG
324 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
20835777 AAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
389 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACT
* *
20835842 GGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
454 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
20835907 GATAGGGGG----TATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCCC
519 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * * * *
20835968 GGCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTTAGGTTCTCTGGCGATGCTCCGACGATGGT
584 GGCCCCCCGATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCTGGCGATGGT
* * * * * *
20836033 GCCCCGACGAAGAAAAATGCAGCACCAACACATGCTCGAGCCCAGCATGTGCTGCTGTAACCCTT
649 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
*
20836098 GATCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
714 GATCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
20836138 CTAAGCTATC
Statistics
Matches: 2236, Mismatches: 278, Indels: 70
0.87 0.11 0.03
Matches are distributed among these distances:
889 80 0.04
890 1 0.00
891 326 0.15
892 59 0.03
893 239 0.11
894 76 0.03
895 1 0.00
896 1 0.00
897 1 0.00
898 1 0.00
899 2 0.00
900 279 0.12
901 387 0.17
902 270 0.12
903 1 0.00
905 1 0.00
910 1 0.00
912 506 0.23
913 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGAGGGCGAG
CGGGCGGGCGGACACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAACCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTCAAAACTTTTTACGATTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTAG
CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG
CCCCCCGATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCTGGCGATGGTGC
CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA
TCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
GGGATCGGCTGAGTCCCCCTCTGCGTGCTATCGATCCTACTGCCACAACCCTCAGTCC
Found at i:20837692 original size:26 final size:26
Alignment explanation
Indices: 20837652--20837704 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20837642 CCAGTCCGAT
* *
20837652 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20837678 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20837704 C
1 C
20837705 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20839365 original size:26 final size:26
Alignment explanation
Indices: 20839329--20839380 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20839319 CGGTCTGATA
*
20839329 TTAGACTGGGAATGAACTTTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
20839355 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCTGTATGC
20839381 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCTGTATGC
Found at i:20840716 original size:865 final size:837
Alignment explanation
Indices: 20839463--20841927 Score: 3167
Period size: 865 Copynumber: 2.9 Consensus size: 837
20839453 GACCGGGTCC
* * * * * *
20839463 CCCTCAGCCT-ATATGATCTTAGACTGAGAATGAACTCTGTATGCCTCAGCCAACCGACGAAACG
1 CCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACAAAACG
* * * *
20839527 AGCGGGCGGGCGGGCGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCTGTGGA
66 AGCGGGCGGGC---AGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
20839592 TCGATAAGGTGGTAGGTTGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
128 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * * *
20839657 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCAAGGCAAGATGACCCGTT
193 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
20839722 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCTAGATTTTTTAAAATTTTTTTGCAAGGG
258 TTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC-AAATTTTTTAAAA-TTTTTTGGAAAGA
*
20839787 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
321 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * *
20839852 CTAAAAACTCGAAGTGTACAAGCTTTTATGA-TATTTTGGAAAAAGTGTCCCCATTTCAGACACT
386 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
20839916 TTAATGGCTACTGACAGCAAGCCTATAAAATCTCAAATGCTCTTTAAGCGAGTGTGAGTTCTCAA
450 TTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGA
* *
20839981 GGTTTGATGAGGGAAAGTGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
514 GGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
20840046 GCACACCCCCCCGGGCCGCCTGATCACCGGAACCCAAAAACCGTCGGTTAGGTTCTCCGGCGATG
578 GCACACCCCCCC-GGCCCCCTGATCGCCGGAACCCCAATACCGTCGGTTAGGTTCTCCGGCGATG
* * * * *
20840111 CTCCGACGATGGCACCCCGGTGAATAAAAATGCGACACCACCACATGCCCGAGCCCAGCATGTGT
642 CTCCGACGATGG--CCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
*
20840176 TGTCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
705 TGTCGCAACCCTCAGTC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * **
20840241 ACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAAGGGTGGGATGCGCAAG-CCGGGGATCGGTC
769 ACGAAACGAGCGTAC-AGC-C-C-G--GG---G-A---T-CGA--C-CAAGTCC--CCATCGG-C
* * *
20840305 GTG-TCCCCCCTGCATGCTACTGCAA
814 ATGCT-ACCCAT-CATGCTACTGCAA
** * ** * *
20840330 CCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAATCGACAAAATG
1 CCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACAAAACG
* ** * *
20840395 AGCGGGTGGGTTGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGCATCG
66 AGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
20840460 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
*
20840525 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
20840590 TATTTTTCATGATTTTTGAAA-TGTTTTGCGGTTCGAAATTTTTTAAAATTTTTTCGGAAAGAGT
261 TATTTTTCATGATTTTTGAAACT-TTTTGCGGTTC-AAATTTTTTAAAATTTTTT-GGAAAGAGT
* * *
20840654 TCTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTTGTTAGCATGCA-AAAAACAATTCAGC
323 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGC
* * *
20840718 TAAAAACTCGATGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTTAGACACTTT
387 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* ** *
20840783 AATGGCTAGTTTCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGTGG
452 AATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCGAGG
* *
20840848 TTTGGTGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATCTGCGC
516 TTTGATGAGGGATAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * *
20840913 ACA-CCCCCC-GCCCCCTCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTGTCCGGCGATGCT
580 ACACCCCCCCGGCCCCCT-GATCGCCGGAACCCCAATACCGTCGGTTAGGTTCTCCGGCGATGCT
*
20840976 CCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGTCCGAGCCCAGCATGTGCTG
644 CCGACGAT-G-GCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
20841041 TCGCAACCCTCAGACCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAT
707 TCGCAACCCTCAGTCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * * *
20841106 GAAACGAGCGTACATCCCGGGGATCGACCAGGTCCCCCTCTGCATGCTATCGATCCTGCTGCTGC
771 GAAACGAGCGTACAGCCCGGGGATCGACCAAGTCCCCATCGGCATGCTACCCATCATGCTACTGC
20841171 AA
836 AA
*
20841173 CCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACAAAACA
1 CCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACAAAACG
* * *
20841238 AGCGGGCGGGCAGGCTGGCGAGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
66 AGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * * *
20841303 ATAGGGTGGTAGGTGCGTTTAGGCACATCTTCTTATTTCT--A---C-GTGCCAATTTTATGGCT
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
20841362 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* ** * *
20841427 TATTTTTCACGATTTTCAAAACTTTTTGTGGTTCAACATTTTTTAAAATTTTTTTGAAAGGAGTT
261 TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAA-ATTTTTTAAAATTTTTTGGAAA-GAGTT
* * * *
20841492 TTAGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCATAAAAAAATTCTGCTA
324 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
20841557 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAA
389 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
20841622 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
454 TGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTT
* * * *
20841687 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCTTCGCACACCATGTGCGCTC
518 TGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * *
20841752 ACCCCCCCGACCCCCCCGATCGTCGGAACCCCACTACCGTCGGTTAGGTTCTCCGG-G--GAT--
582 ACCCCCCCG-GCCCCCTGATCGCCGGAACCCCAATACCGTCGGTTAGGTTCTCCGGCGATGCTCC
* *
20841812 G--G-T-GCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGC
646 GACGATGGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGC
* * **
20841873 AACCCTCAGTCCGGTTCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGTCA
711 AACCCTCAGT-CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
20841928 TGTGCGCAGA
Statistics
Matches: 1417, Mismatches: 158, Indels: 85
0.85 0.10 0.05
Matches are distributed among these distances:
828 102 0.07
829 1 0.00
831 1 0.00
832 1 0.00
834 1 0.00
836 8 0.01
837 354 0.25
838 21 0.01
839 32 0.02
840 5 0.00
841 1 0.00
843 163 0.12
844 5 0.00
845 4 0.00
846 3 0.00
847 3 0.00
849 2 0.00
850 1 0.00
853 1 0.00
854 1 0.00
857 2 0.00
859 1 0.00
860 1 0.00
861 1 0.00
862 8 0.01
863 164 0.12
864 23 0.02
865 445 0.31
866 1 0.00
867 7 0.00
868 54 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (837 bp):
CCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACAAAACG
AGCGGGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAATTTTTTAAAATTTTTTGGAAAGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
CCCCGGCCCCCTGATCGCCGGAACCCCAATACCGTCGGTTAGGTTCTCCGGCGATGCTCCGACGA
TGGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC
TCAGTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
TACAGCCCGGGGATCGACCAAGTCCCCATCGGCATGCTACCCATCATGCTACTGCAA
Found at i:20842092 original size:26 final size:26
Alignment explanation
Indices: 20842063--20842115 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20842053 CCGATCTGAC
*
20842063 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20842089 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20842115 C
1 C
20842116 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20843896 original size:26 final size:26
Alignment explanation
Indices: 20843860--20843938 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
20843850 TCGGTCCAAT
20843860 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20843886 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20843912 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20843938 C
1 C
20843939 CTAAGTCAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20844211 original size:917 final size:914
Alignment explanation
Indices: 20842063--20844497 Score: 3149
Period size: 917 Copynumber: 2.7 Consensus size: 914
20842053 CCGATCTGAC
20842063 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACT-CGTATGCCTAAGTCAACCC
* * * * * *
20842128 ACAAAACGAGTGTGCGGGTGCTTAGCCGACCAGAGGGGCGGGATGTGTAAGTCGGGGATC-GATC
64 ACGAAACGA-TGTGC-AGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCAG-CC
* * * *
20842192 GGGTCCCCCTCTGCGCGCTACCGATCCTGCTACCG-CAACCCTCGATCCTGTCTGATCTTAGACT
126 GGGTCCCCCTCTGCGTGCTATCGATCCTGCT-GCGACAACCCTCGGT-CTGTCTGATCTTAGACT
* * * *
20842256 GGGAATGAACTCCATATGCCTAAGCTAACCAATGAAACGAGCGGGAGGGGGGGCGGACTGGCACT
189 GGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGC----GGGCGGGCGG-CGGGCACT
* * *
20842321 ACGCAGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
249 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * **
20842386 ATCTTCATATTTCTACATGCCAATGCAATTTTTCTGGCTTGTAAATTCATACAATTTTCCCTTAA
314 ATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
20842451 GCCATCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTT
379 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
* * * *
20842516 TACGGTTC-AGGATTTTTAAAAATTTTTTCAGATGGAGTTTTGGCCCCAAACTTGGTAGACATGA
444 TACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACATGA
* * *
20842580 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCGAAAAACTCGAAAGTGTGCAAGATTTT
508 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAAGTGTACAAGA-TTT
* * *
20842645 TGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTA
571 TGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
20842710 AAATCTGAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
636 AAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGAGCCAATA
* * *
20842775 TAAGAGCCAAGTACTAGCAACCATCGCACATCATGTGCGCACACCCGCCCGGCCCCCCTGATCGC
701 TAAGAGCCAAATACCAGCAACCATCGCACATCATGTGCGCACA----CCC-GCCCCCCTGATCAC
* * * * *
20842840 CGGAACCCTAATGCCGCTAGTAAGGCTCTCCAACGATGCTCTGGCGATGGTGCCCCGACGAGGAA
761 CGAAACCATAATGCCGCTAGTAAGGCTCTCCAACGATGCTCTGACGATAGTGCCCCGACGAAGAA
* *
20842905 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCCAGTCCAATC
826 AAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTCTCGTAACCCTCGGTCCAGTCCAATC
20842970 TTAGACTGGGAATGAACTCGCATG
891 TTAGACTGGGAATGAACTCGCATG
*
20842994 CTTAGACTGGGAATGAACTCCGTATGC-----CT--AA-G---TC--A-ACC-AA--CGAA---A
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCGTATGCCTAAGTC-AACCCA
* * * * *
20843039 CG-AGCGA-GTG-AGCGCTCAGTCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAACCGGGT
65 CGAAACGATGTGCAGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCAGCCGGGT
* * * * * * * * * *
20843101 CCCCCTCAGTGTACTATCGATCCTGCTGCCACAACACTCAGTCTGGTCCGATCTTAGAGTAGGCA
130 CCCCCTCTGCGTGCTATCGATCCTGCTGCGACAACCCTCGGTCT-GTCTGATCTTAGACTGGGAA
* *
20843166 TGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGGACCGACGGGCACTACGCCGGCC
194 TGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGG-GCGGCGGGCACTACGCCGGCC
* * * *
20843231 AGAGAGACGGGATGCGCAAGCTGTGGATCGATAAGGTGGTAGGTCGGTTTAGGCAGATCTTCATA
258 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * * *
20843296 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGGCTTCACA
323 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
20843361 TGAAGTTTCATGGCAAGATGACTCATGTTCTTTTTTTCATGATTTTTGAAACTTTTTACGGTTCG
388 TGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
* *
20843426 AGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCATACTTGGTACACATGATCCTTGTATT
453 AGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
* ** *
20843491 TTTATTGGCATGTGCAAAAAACTTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
518 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG
* * *
20843556 AAAGAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCCGTAAACCTGTAAAATCTCAAATG
583 AAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
20843621 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGAGCCAATATAAGGGCCAAAT
648 CTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGAGCCAATATAAGAGCCAAAT
* * * *
20843686 ACCAGCACCCATCGCACATCATTTGCGCACA-CC-CCCCTC-GATCACCGAAACCATAATGTCG-
713 ACCAGCAACCATCGCACATCATGTGCGCACACCCGCCCCCCTGATCACCGAAACCATAATGCCGC
* * * *** * *
20843747 TCGGTCAGGTTCTCCGGTGATGCTCTGACGATAGTGCCCCGGCGAAGACAAATGCAGCACCAGCA
778 T-AGTAAGGCTCTCCAACGATGCTCTGACGATAGTGCCCCGACGAAGAAAAATGCAGCACCAGCA
* * * *
20843812 CATGCCTGAGCCCAGCATGTGCTACT-GTAACCTTCGGTTCGGTCCAATCTTAGACTGGGAATGA
842 CATGCCCGAGCCCAGCATGTGCT-CTCGTAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGA
*
20843876 ACTCCGTATG
906 ACT-CGCATG
20843886 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTC-GTATGCCTAAGTCAACCC
* * ** *
20843951 ATGAAACGCATGTGCAGATGCTCAGCCGGCC-GAGGGGCGGGATGCGCAAGTCAAGAATCAGCCG
64 ACGAAACG-ATGTGCAG-TGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCAGCCG
* *
20844015 GGTCCCCCTCTGCGTGCTATCGATCTTGCTGCGACAACCCTCGGTCTGATCTGATCTTATACTGG
127 GGTCCCCCTCTGCGTGCTATCGATCCTGCTGCGACAACCCTCGGTCTG-TCTGATCTTAGACTGG
* *
20844080 GAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGA-CTGGGCGGGCAGGCGGGCACTACGCC
191 GAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGC-GGGCGGGC-GGCGGGCACTACGCC
* *
20844144 GGCCAGAGAAATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
254 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* *
20844209 CATATTTCTACATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTT
319 CATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
20844274 CATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGC
384 CACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * * * *
20844339 TTCGGGATTTTTTAAAATTTTTTCGGAACGATTTTTGGCCCAAAACATT-GTAGACGTGATCCTT
449 TTCGAGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAAC-TTGGTAGACATGATCCTT
* * * *
20844403 GTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTATAAGATTTTGTGACA
513 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACC
*
20844468 ATTTGAAAAAAGTG-TCCCTATTTAAGACAC
578 ATTTGAAAAAAGTGTTCCC-ATTTCAGACAC
20844498 CATTGCACAT
Statistics
Matches: 1298, Mismatches: 165, Indels: 96
0.83 0.11 0.06
Matches are distributed among these distances:
890 1 0.00
891 129 0.10
892 38 0.03
894 2 0.00
897 2 0.00
899 161 0.12
900 14 0.01
901 285 0.22
902 3 0.00
904 5 0.00
905 123 0.09
907 4 0.00
908 2 0.00
909 6 0.00
910 4 0.00
911 1 0.00
912 1 0.00
913 4 0.00
914 5 0.00
915 3 0.00
916 11 0.01
917 447 0.34
918 14 0.01
919 1 0.00
922 1 0.00
923 2 0.00
926 2 0.00
931 27 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (914 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTCGTATGCCTAAGTCAACCCAC
GAAACGATGTGCAGTGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGTCGGGGATCAGCCGGGTC
CCCCTCTGCGTGCTATCGATCCTGCTGCGACAACCCTCGGTCTGTCTGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGGGCGGCGGGCACTACGCCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
CTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA
TTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGAGCCAATATAAGAGCCAAATACC
AGCAACCATCGCACATCATGTGCGCACACCCGCCCCCCTGATCACCGAAACCATAATGCCGCTAG
TAAGGCTCTCCAACGATGCTCTGACGATAGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATG
CCCGAGCCCAGCATGTGCTCTCGTAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCG
CATG
Found at i:20844727 original size:26 final size:26
Alignment explanation
Indices: 20844676--20844728 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20844666 CCAGTTCGAT
*
20844676 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20844702 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20844728 C
1 C
20844729 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20846365 original size:26 final size:26
Alignment explanation
Indices: 20846336--20846414 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
20846326 CCGGTCTGAT
20846336 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
20846362 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
20846388 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
20846414 C
1 C
20846415 CTAAGTTAAC
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:20848094 original size:26 final size:26
Alignment explanation
Indices: 20848065--20848117 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
20848055 CCGGTCCGAT
20848065 CTTAGACAT-GGAATGAACTCCGTATG
1 CTTAGAC-TGGGAATGAACTCCGTATG
20848091 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20848117 C
1 C
20848118 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20848995 original size:26 final size:26
Alignment explanation
Indices: 20848959--20849011 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20848949 CTGGTCTGAT
20848959 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20848985 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20849011 C
1 C
20849012 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20849462 original size:890 final size:887
Alignment explanation
Indices: 20846535--20849933 Score: 4677
Period size: 890 Copynumber: 3.8 Consensus size: 887
20846525 GTGGGTGGGA
* *
20846535 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
20846600 GGTGGGTTTAGGCACATCTTCATATTTCTTCATACCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
20846665 ACAATGGTCCCTTAAGCCTTCACTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * *
20846730 ATTTTTGAAACTTTTTACGATTTGGGATTTTTTAAAATTTTTTCAGAAGGAT-TTTTGGCCCCAA
196 ATTTTTGAAACCTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG-TGTTTTGGCCCCAA
* *
20846794 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAAG
260 ACTTGGTAGACGTGATCCTAGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAG
*
20846859 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGAT
325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGAC
* * * *
20846924 AGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTTTTAGTTCTTGAGGTTTGATGAGGGAT
390 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
** * * *
20846989 AAGGGGTAAATATAAGGGCCAAGTACCAACACCCATCTCACATCATGTGCGCACACCCCCCAGCC
455 -AGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACA---CCCA-CC
* * * * * *
20847054 CCCTTGATCGTCGGAACCTCAATGCCATCGGTCAGGTTCTCCGATGATGCTC--CGGT-----G-
515 CCC--GACCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCGATGGTGCCCCGA
* * *
20847111 --AAGAAAAATGCAGCATCAGCACATGCCCGAGCCCAGCATGTGCTG-CGCAACCCTCAGTCCGG
578 CAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGG
* * * *
20847173 TTTGATCATAGACTGGGAATGAAATCCGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGT
643 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
20847238 CAACCCATGAAACGAGCGTGCGGGCGCTCAG-TCGGCCAGGGGGGCAAGATGCGCAAGCCGGGGA
708 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * * * * *
20847302 TCGGCCGAGT-CCCCTCTACGTA-CTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCCAATCT
772 TCGACCGGGTCCCCCTCTACG-AGCTGTCGATCCTGCTGCCCCAACCCTCGGTCCGATCCAATCT
* * * *
20847365 TCGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
836 TAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGTGC
* * * * * *
20847417 GGGCGGGTGGGCACTATGCCGGCCAGAGAGATGGGATGCGCAAGCCGAGGATCGATAGAGTGCTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
20847482 GGCGGGTTTAGGCACTTCTTCATATTTCTGCATGCTAATGCCATTTTTATGGCTGGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
20847547 ACAATGGTCCCTTAAGGCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** *
20847612 ATTTTTGAAAGTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTCTTGGCCCCAAA
196 ATTTTTGAAACCTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAA
* * * *
20847677 CTTGGTAGACGTGGTCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTCAAAACTAGAAGT
261 CTTGGTAGACGTGATCCTAGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGT
20847742 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACA
326 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACA
* *
20847807 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAGCTCTCGAGGTTTGATGAGGGATA
391 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
20847872 GGGGTCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACACCCACCAGCTC
456 GGGG-CCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACA--C-CCA---C
* *
20847937 CCCCGATCGCCGGAACCCCAATGCCATCGGTCAGGTTCTCC---G--G--CGATGGTGCCCCGAC
514 CCCCGACCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCGATGGTGCCCCGAC
* ** * * *
20847995 AAAGAAAAATGTGGCACCAGCACATGCTTGAGCCGAGCTTGTGCTGCCGCAACCCTCGGTCCGGT
579 AAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGT
* *
20848060 CCGATCTTAGACAT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTGAGT
644 CTGATCTTAGAC-TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * ** * ** * **
20848124 CAACCCACGAAATGAGCGTGTGGGCATTCAACCAGCCAGAGGGGCGGGATATGCAAGCCGGGGAT
708 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * *
20848189 CGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCACC-ACCCTTGGTCCGATCCAATCTT
773 CGACCGGGTCCCCCTCTACGAGCTGTCGATCCTGCTGCC-CCAACCCTCGGTCCGATCCAATCTT
* *
20848253 AGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAACGAGTGAGTGTGC
837 AGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG-AA--A-TGAGCGTGC
*
20848308 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGTATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
20848373 GGTGGGTTTAGGCAGATCTTCATATTTCTACGTGCCAATGCCATTTTCATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
20848438 ACAGTGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCGTTTTCTATTATTCATG
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* ** *
20848503 ATTTTTGAAACTTTTTGGGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
196 ATTTTTGAAACCTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAA
20848568 CTTGGTAGACGTGATCCTAGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAG
261 CTTGGTAGACGTGATCCTAGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAG
* * *
20848633 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATAGCTACTGGC
325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGAC
20848698 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
390 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
20848763 AGGGGCCCAATATAAGGGCTAAGTACCAGCACCCACCGCATATCATGTGCGCACA-CC-CCCCCG
455 AGGGG-CCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCACCCCCG
* * * * *
20848826 ACCGTC-GAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGGTGATAGTGCCTCGGCA
519 ACCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTC----GATGGTGCCCCGACA
* * *
20848890 AAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTC
580 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
*
20848955 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCA
645 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
20849020 ACCCATGAAACGAGCGTACGGGTGGTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCG
710 ACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
* * * * * * *
20849085 ATCGGGTCCCCCTTTTCGAGCTGTCGATCCTACTACCCCAACCCTCGGTCTGATCCGATCTTAGA
775 ACCGGGTCCCCCTCTACGAGCTGTCGATCCTGCTGCCCCAACCCTCGGTCCGATCCAATCTTAGA
* * *
20849150 CTGGGAATTAACTTTGTATGCCTAAGCAAACCGACGAAATGAGCGTGC
840 CTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGTGC
**
20849198 GGGCGGGTAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
20849263 GGTGGGTTTAGCCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
20849328 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACA
131 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
20849393 ATTTCTGAAACCTTTTACAGG-TCGGGATTTTTTAAAAATTTTTT-GGAAGGTGTTTTGGCCCCA
196 ATTTTTGAAACCTTTTAC-GGTTTGGGATTTTTT-AAAATTTTTTCGGAAGGTGTTTTGGCCCCA
* * * * *
20849456 AACTTGGTAGGCGTGATGC-ATTTATTTTTGTTGGCATGCACAAAAAAAATCAGATAAAAACTCG
259 AACTTGGTAGACGTGATCCTA-GTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCG
* * * *
20849520 AAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTCCAGACAGTTTAATTGCTACT
322 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
20849585 GGCAGCAAACCTGTAAAATATCGAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
387 GACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
20849650 GATAGGGAGCCAATATAAGGGCCAAGTACCAGCACCCACTGCACATCATGTGCGCACA-CC-CCC
452 GATAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCACCC
* * *
20849713 CCGGCCGCC-GAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCG
516 CCGACCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCT-C---GATGGTGCCCCG
* ** * *
20849777 ACAAAGAAAAATGCGGCACCAGCACATGCCCGAACAGAGCATGTGCTGTCGTAACCCTCGGTTCG
577 ACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCG
* * *
20849842 GTCTGATCTTAGATTGGGAATGATCTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAAG
642 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
20849907 CCAACCGACGAAACGAGCGGGCGGGCG
707 TCAACCCACGAAACGAGCGTGCGGGCG
20849934 GGAGGACGAG
Statistics
Matches: 2247, Mismatches: 225, Indels: 82
0.88 0.09 0.03
Matches are distributed among these distances:
875 1 0.00
877 4 0.00
879 1 0.00
881 9 0.00
882 504 0.22
883 27 0.01
884 15 0.01
885 38 0.02
886 132 0.06
887 81 0.04
888 6 0.00
889 1 0.00
890 663 0.30
891 298 0.13
892 194 0.09
893 5 0.00
894 268 0.12
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
ATTTTTGAAACCTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTAGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCACCCCCGAC
CGCCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCGATGGTGCCCCGACAAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGG
TCCCCCTCTACGAGCTGTCGATCCTGCTGCCCCAACCCTCGGTCCGATCCAATCTTAGACTGGGA
ATGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGCGTGC
Found at i:20849885 original size:26 final size:26
Alignment explanation
Indices: 20849849--20849901 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20849839 TCGGTCTGAT
* *
20849849 CTTAGATTGGGAATGATCTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20849875 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20849901 C
1 C
20849902 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20850630 original size:26 final size:26
Alignment explanation
Indices: 20850593--20850645 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20850583 CCGGTCCGAT
*
20850593 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACGGGGAATGAACTCCATATG
*
20850619 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCATATG
20850645 C
1 C
20850646 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCATATG
Found at i:20851743 original size:27 final size:27
Alignment explanation
Indices: 20851693--20851746 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
20851683 CTGACAAAAC
*
20851693 GAGCGGGCAGGCGGGCAGGCGGGCACT
1 GAGCGGGCAGGCAGGCAGGCGGGCACT
* * *
20851720 GAGCGGGCGGGCAGGCGGGTGGGCACT
1 GAGCGGGCAGGCAGGCAGGCGGGCACT
20851747 ACGCCGGCCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.13, C:0.24, G:0.57, T:0.06
Consensus pattern (27 bp):
GAGCGGGCAGGCAGGCAGGCGGGCACT
Found at i:20852419 original size:26 final size:26
Alignment explanation
Indices: 20852390--20852442 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20852380 CCGATCCAAT
* *
20852390 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGCAATGAACTCCGTATG
*
20852416 CTTAGAATGGCAATGAACTTCGTATG
1 CTTAGAATGGCAATGAACTCCGTATG
20852442 C
1 C
20852443 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGCAATGAACTCCGTATG
Found at i:20853316 original size:26 final size:26
Alignment explanation
Indices: 20853287--20853336 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20853277 GTCTGATCTG
*
20853287 AGACTGGGAATGAACTCTGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
20853313 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
20853337 CTACGTCAAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:20855008 original size:875 final size:874
Alignment explanation
Indices: 20849875--20856220 Score: 7239
Period size: 875 Copynumber: 7.1 Consensus size: 874
20849865 TCTCCGTATG
* * * *
20849875 CTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGAGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGAGCGGGCGGGCGGG
* * ** * ** *
20849940 CGAGCACAACATCGGCCAGAGAGACGGGATGCAAAAGCTATGGATCGATAGGGTGGTAGGAGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
20850005 TTAGGCACATCTTCATATTTC-TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTAGGCACATCTTCATATTTCATG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
20850069 GACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTC
* ** ** * *
20850134 AAAACTTTTTGCGGTTAAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCTCAAACATGGT
259 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
20850199 AGACTTGATCCTTGTATTTTTGTTGGTATGCACAAGAAAATTCAACTAAAAACTCGAAGTGTACA
324 AGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
20850264 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGCCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
20850329 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGTGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*** * * * **
20850394 CCAATATAAGGGCCAAGTACCAATTCTCAT-TGTACATTATGTGCTTACACCCCCCGGCACCCCC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCT-CACATCATGTGCGCACACCCCCCGGC-CCCCC
* *** * * * **
20850458 GATCGCCAGAACCCCAATACCGTCAATTAGGTTCTCAGGTGATGCTCCGACGATGGTGCCCCGAC
581 GATCACC-GAACCCCAACGTCGCCAATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
** * * * * *
20850523 GAAGAAAAATGCAGCACCAACACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCAGCCCGGT
645 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTA-----AT
* *
20850588 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACGGGGAATGAACTCCGTATGCCTAAGTC
705 CCG--GTT---CT--G-ATG-----C---TG---AGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
20850653 AACCCACGAAACGAGCGTGCGGGCGCTAAGCTGGCTAGAGGGGCGGGATGCGCAAGCTGGGGATT
751 AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * *
20850718 GGTCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCCACAACCCTCAGTCTGATCCAAT
816 GGCCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGAT-CGAT
* * * *
20850778 CTTAGA-TAGGGAATGAACTTCGTACGCCTAAGCCAACCGATG-AA-A-CGA----GCGGGTGGG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGAGCGGGCGGGCGGG
* * * * * *
20850835 CGGGAACTATGCCGGCCAGAGAGATGGGAAGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
20850900 TTAGGCACATCTTCATATTTC-TGCATGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTAGGCACATCTTCATATTTCATG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* ** *
20850964 GTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA-AGACTTATTTTCTATTTTTCACGATTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACA-ACTCGTTTTCTATTTTTCATGATTTT
* * ** *
20851028 CAAAACTTTTTACGGTTCGAGATCTTCCAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGG
258 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
* * *
20851093 TAGACGTGATCCTTGTATTTTTGTTGGCATTCCCAAAACAATTCAGCTAAAAACTCGAAGTGTAC
323 TAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* ** *
20851158 AAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTTGGACACATTAATGGCTACTGGCAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * *
20851223 ACTTCTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGCATAGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
20851288 GCCAATATAAGGGCCAAGTACCAGTACCCATCGT-ACATCAAGTGCGCACACCCCCCGGCCACCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATC-TCACATCATGTGCGCACACCCCCCGGCC-CCC
* * * * ** * ** *
20851352 CGATCATCGAAACCCTAATGCCGCCGGTCAGGTTCCCCGGTGATGCTCTGGA-GATGGTGCCCCG
580 CGATCACCG-AACCCCAACGTCGCCAATCAGGTTCTCCGACGATGCTC-CGACGATGGTGCCCCG
* **** * * * ***
20851416 ACAAAGAAAAATACATCACCAGCACATGCCTGAGCCCAGAATGTGCTG-TCGCAACCATCGGTCC
643 ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTTAATCC
* * * *
20851480 CG-CCTGATCCT-AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACG
707 GGTTCTGATGCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
* * * * * *
20851543 GGTGCTCAGTCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTACGTG
772 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTG
* * ** * * *
20851608 CTGTCGATCCTACTGTCGCAACCCTCAGTCTGGTCCGAT
837 CTGCCGATCCTGCTACCGCAACCCTCGGTCCGAT-CGAT
* *
20851647 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGCGGGCAGGCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-GAA--A----G-A-GC--G-A-G
20851712 CGGGCACTGAGCGGGCGGGCAGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGA-AAG
53 C--G----G-GCGGGC--G--GGC----GGGCACTACGCCGGCCAGAGAGACGGGATGC-ACAAG
* * *
20851776 CCGTGGATCGACAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTC-TGCATGCCAGTGCCA
102 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCATG-ATGCCAATGCCA
* *
20851840 TTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGAC
166 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * *
20851905 AACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAACTTTTTT
231 AACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
20851970 TGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGCATATTTT-TTGGCATGCACAAA
296 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG--TATTTTGTTGGCATGCACAAA
* * * *
20852034 AAAATTCAACTAAAAGCTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCA--T
359 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
20852097 CGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTG
424 C-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
20852162 AGTACTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCAC
488 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCAC
* * * * *
20852227 ATCAAGTGCGCGCACCCCCCGGCCCCCCGATCGTCGGAACCCCAA--T-GCCACTGGACAGGTTC
553 ATCATGTGCGCACACCCCCCGGCCCCCCGATC-ACCGAACCCCAACGTCGCCAAT---CAGGTTC
*
20852289 TCCGACGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGCT-GCACCAGCACATGCCCGAGC
614 TCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATG-TGGCACCAGCACATGCCCGAGC
** *
20852353 CCAGCATGTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCT
678 CCAGCATGTGCTGCTGCAA-CC-C--T----T--AATC-----C--GG--T----TCTG-ATGCT
* * * * * * *
20852418 TAGAATGGCAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGTGCTCAGCCG
719 GAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * * * *
20852483 GCCAGAGGGGTGGGATGCACAAGTCGGCGATCGGCTGGGTCACCCTCTGTGTGCTACCAATCCTG
784 GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGCTGCCGATCCTG
* * * * *
20852548 TTGCCACAACCCTCGATCCGATTTGAT
849 CTACCGCAACCCTCGGTCCGA-TCGAT
* *
20852575 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGGACGAAATGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGAGCGGGCGGGCGGG
** * * *
20852640 CGATCACTAAGTCGGCCAGAGAGACTGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
20852705 TTAGGCACATCTTCATATTTC-TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTAGGCACATCTTCATATTTCATG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* ** * *
20852769 GTCCCTTAAGCCTTCACGTGAAGTTTAATGGTGAGACGACTCGTTTTCTATTTTTCATGATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTC
* *
20852834 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGT
259 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
20852899 AGACTTGATCCTTGTATATTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACA
324 AGACGTGATCCTTGTAT-TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
20852964 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
20853029 CCTGTAAAATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCGAGTTTTGATGAGGGATAAGGAG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
20853094 CCAATATAATGGCCAAGTACCAGCACTCATCGCACATCATGTGCGCACACCCCTCCCGGCCCCCC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACA-CCC-CCCGG-CCCCC
* ** * * * *
20853159 CAATCGTCGTAACCCCAA--T-GCC--GCCGG---T-C-A-GGTTCTCCGACGATGGTGCCCCGA
580 CGATCACCG-AACCCCAACGTCGCCAATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * *
20853213 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTTGGTCCGG
644 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA--C-----CC--
* * *
20853278 TCTGATCTGAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTACGT
700 T-TAATC-----C--GG--T----TCTG-ATGCTGAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
20853343 CAACCCACGAAATGAGTGTGCGGGCACTCAGCCGGCCAGAGGGG-GTGGATGCGCAAGCTGGGAA
750 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG-GGATGCGCAAGCCGGGGA
* ** * * * *
20853407 TCGGCCGGGTCCCCCTCTATGTGCTGCCAATCCTGCTACCATAACCCTCAGTCTGGTTCAAT
814 TCGGCCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGGTC-CGATCGAT
* * * *
20853469 CTTAGACAGGGAATGAACTCCGCATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGTGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGAGCGGGCGGGCGGG
* * *
20853534 CGGGCACTACGCCGGCTAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA-GTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
20853598 TTAGGCACATCTTCATATTT-ATGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTAGGCACATCTTCATATTTCATG-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
20853662 GTCCCTTAAACCTTCACGTGAAGTTTCATCGCAAGACAACTCGTTTTCTATTTTTCATGATTTTC
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTC
* ** * ** *
20853727 AAAAATTTTTGTGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGT
259 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
20853792 AGACATGATCCTTGTATTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGCACAA
324 AGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
20853857 GATTTTGTGACCATTAGAAAAAACTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
20853922 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
20853987 CAATATAAGGGCCAGGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCGGCCCCCCTGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCGGCCCCCC-GA
* * **** * * * *
20854052 TCACCGGAACCCCAATGCCGTTGGTCAGGCTCTTCGACGATGCTCTGACGATGGTGCCCCGGCGA
583 TCACC-GAACCCCAACGTCGCCAATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* *
20854117 AGAAAAATGCGGCACCAGCACATACCCGAGCCCAGCATGTGCTGCTGCAACCCTTAATCCGGTTC
647 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTAATCCGGTTC
* *
20854182 -GAT-CTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGCGC
712 TGATGCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
* *
20854245 TCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGCTGTC
777 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGCTGCC
* *
20854310 GATCCTGCTACCGCAACCCTTGGTCCAGATCAAT
842 GATCCTGCTACCGCAACCCTCGGTCC-GATCGAT
** * * *
20854344 CTTAGAAAGGGAATGAACTTCGTATGCCTAAGACAACTGACGAAACGAGCGAGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGAGCGGGCGGGCGGG
* * * * *
20854409 CGGGCACTACGCCGACTAGAGAGATGGGATGTACAAGCCGTGGATCCATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
20854474 TTAGGGATATCTTCATATTTCAATG-TGCCAATGCCATTTTTATGACTTGTAAATTCATACAATG
130 TTAGGCACATCTTCATATTTC-ATGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
20854538 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACCCATTTTCTATTTTTCATGATTTTC
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTC
20854603 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
259 AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
20854668 AGACGTAATCCTCGTATTCTTGTTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAGTGCACA
324 AGACGTGATCCTTGTATT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
20854733 AGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
20854798 CCTGTAAAATCTCAAATGCTCTTCAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATTGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
20854863 CCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCGG-GCCCCGA
518 CCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* ** * **
20854927 TAACCAGAAGTCCAACGTCGCCAATCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTGA
583 TCACC-GAACCCCAACGTCGCCAATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* *** *
20854992 AGAAAAATGTGGCACCAGCACATGCCCTAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGG-TC
647 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTAATCCGGTTC
* * *
20855056 TGAT-CTGAGACTGTGAATAAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
712 TGATGCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGC
* * * * * * ** *
20855120 TCAACCGGCCAAAAGGGCAGGATACGCAAGACGGGGATCGGCCGGGTCCCCCTCTACATGCTACC
777 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGCTGCC
* * *
20855185 GATCCTGCTACCGCAACCCTCAGTTCGGTCTGAT
842 GATCCTGCTACCGCAACCCTCGGTCCGATC-GAT
* * *
20855219 CTTAGACTGGGAATGATCTCCGTATGCCTAAGCCAATCGACG-AA-A-CGAGCGGGTGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGAGCGGGCGGGCGGGC
* * * * * *
20855281 AGGAACTACGCCGGCCAGAGAGACGTGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGAGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
**
20855346 TAGGCACATCTTCATATTTCTATG-TGCCAATGATATTTTTATGGCTTGTAAATTCATACAATGG
131 TAGGCACATCTTCATATTTC-ATGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
20855410 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCA
* * * * * *
20855475 AAACTTTTTACGGTTTGGAATTTTTTAAAATTTTTTCGAAAGTATTTTTGGCCCCAAACTTGGTA
260 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
20855540 AAGGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTTGAAGTGTACAA
325 GACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
20855605 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
20855670 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGAATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
20855735 CAATATAAGGGCCGAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGGCCCCCTC
519 CAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCG--CACACCCCCCGGCCCCC-C
* * ** * * *
20855800 GATCACCGAAACCCCAATGTCGTCGGTTAGGTTCTCGGGCGATGCTCCTG-CGATGGTGCCCCGA
581 GATCACCG-AACCCCAACGTCGCCAATCAGGTTCTCCGACGATGCTCC-GACGATGGTGCCCCGA
* * *
20855864 CGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG-TCGCAACCCTCAGTCC-
644 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTTAATCCG
* * * * * * * *
20855927 GTTCTGATCCT-AGACTGAGAATGAACTCCATATGCCAAAGTCAACCGATGAAATGAGCGTACAG
708 GTTCTGATGCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGG
* * * * * *** *
20855991 GCGTTCAGCCGGCCAGAGGGGTGGGATGCGCAAG-CTGGGATCGACCGAGTCCCCCTCTGCCTGT
773 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGC
* * ** *
20856055 TGTCGATCCTACTGTCGCAACCCTCGGTCTGATCCGAT
838 TGCCGATCCTGCTACCGCAACCCTCGGTCCGAT-CGAT
* * *
20856093 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCGACCGACG-AA-A-CGAGCGGGAGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGAGCGGGCGGGCGGGC
* * *
20856155 GGGCACTACGCCGGCTAGAGAGACGGCATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
20856220 T
131 T
20856221 TAAGATTTTG
Statistics
Matches: 4730, Mismatches: 578, Indels: 299
0.84 0.10 0.05
Matches are distributed among these distances:
869 170 0.04
870 1 0.00
871 465 0.10
872 3 0.00
873 14 0.00
874 180 0.04
875 715 0.15
876 205 0.04
877 224 0.05
878 5 0.00
879 1 0.00
881 3 0.00
882 2 0.00
883 1 0.00
884 5 0.00
886 1 0.00
889 6 0.00
890 21 0.00
891 8 0.00
892 211 0.04
893 200 0.04
894 336 0.07
895 565 0.12
896 9 0.00
897 2 0.00
898 2 0.00
899 15 0.00
900 13 0.00
901 393 0.08
902 223 0.05
903 185 0.04
904 318 0.07
905 29 0.01
906 3 0.00
907 1 0.00
909 6 0.00
910 1 0.00
912 2 0.00
914 1 0.00
916 2 0.00
917 1 0.00
918 1 0.00
919 1 0.00
920 2 0.00
921 1 0.00
922 1 0.00
925 1 0.00
926 2 0.00
927 6 0.00
928 166 0.04
929 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (874 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGAGCGGGCGGGCGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCATGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTCAA
AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCGGCCCCCCGATCA
CCGAACCCCAACGTCGCCAATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTAATCCGGTTCTGAT
GCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAG
CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTATGTGCTGCCGATC
CTGCTACCGCAACCCTCGGTCCGATCGAT
Found at i:20856394 original size:26 final size:26
Alignment explanation
Indices: 20856365--20856416 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20856355 CCGGTCTGAT
20856365 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20856391 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20856417 GCTAAGCTAG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20857298 original size:26 final size:26
Alignment explanation
Indices: 20857269--20857321 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20857259 CCAGTTTGAT
*
20857269 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20857295 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20857321 C
1 C
20857322 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20858202 original size:26 final size:26
Alignment explanation
Indices: 20858173--20858225 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20858163 CTGGTCCGAT
* *
20858173 CTTAGATTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
20858199 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
20858225 C
1 C
20858226 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:20859095 original size:26 final size:26
Alignment explanation
Indices: 20859066--20859144 Score: 158
Period size: 26 Copynumber: 3.0 Consensus size: 26
20859056 CCAGTCCGAT
20859066 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20859092 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20859118 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20859144 C
1 C
20859145 CTAAGTCAAC
Statistics
Matches: 53, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20860918 original size:26 final size:26
Alignment explanation
Indices: 20860880--20860932 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20860870 CTGGTCCGAT
* *
20860880 CTTACACTGGGAATGAACTCCATATG
1 CTTACACTAGGAATGAACCCCATATG
* *
20860906 CTTAGACTAGGAATGAACCCCGTATG
1 CTTACACTAGGAATGAACCCCATATG
20860932 C
1 C
20860933 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTACACTAGGAATGAACCCCATATG
Found at i:20861766 original size:900 final size:896
Alignment explanation
Indices: 20856309--20862898 Score: 8413
Period size: 900 Copynumber: 7.3 Consensus size: 896
20856299 CTCAACTGCT
* * * ** * *
20856309 CACCAGCACATGCTCGTGCCCAGCATGTGCTACCGCAACCCTCATTCCGGTCTGATCTTAGACTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * * *
20856374 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGGCTAAG-CTAGCCCACAAAACG
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACG
* * * ** * *
20856438 AGCGTACGGGTGCTTAGCCGGCCAGAGAGGTAGGG-TGCGCAAGCCGGGGATCG-GCCGGTCCCC
130 AGCGTGCGGGCGCTCAGCCGGCCAGAG-GGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
* * * *
20856501 CTCTACGTGCTGCCGATGCTGCTACCGCAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAA
194 CTCTGCGTGCTGCCGATCCTGCT-CCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAA
* * * * *
20856566 CTCCGTATACCTAAGCCAACCGACGAAATGAACGAGCGGGCGGTCGGGCAGGCAGGAACTACGTC
258 CTCCGTATGCCTAAGCCAACCGACG--A--AACGAGCGGGCGGGCGGG--TG--GGCACTACGCC
* * * *
20856631 GACCAGAAAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTT
315 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
**
20856696 CATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
380 CATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
20856761 CACGTGAAGTTTCATGGCAAGACAACTCG-TTTCTATTTTTCACGATTTTTGAAACTTTTTACAG
445 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG
*
20856825 TTC-GAGATTTTTTAAAATTTTTTTCGAAGGAGTTTTGG-CCAAAACTTGGTAGACGTGATCCTT
510 TTCAG-GATTTTTTAAAA-TTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* * *
20856888 ATATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACC
573 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
20856953 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTC
638 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* *
20857018 AAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGC
703 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* *
20857083 CAAGTACCAGCACCCATCGCACAGCATGTGCGCACACCCCCCCGGGCCCCTCGATCGTCGGAACC
768 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCCCGATCGTCGGAACC
* * * *
20857148 CCAATGCCGTCGGTCAGGTTCTCTGGTGATGCTCC-AGTGATGGTGCCCCAACGAAAAAAATATG
832 CCAATGCCGTCGGTCAGGTTCTC-GGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAA-ATG
20857212 --G
894 CAG
* * * ** **
20857213 CACCAGCACAAGCCCGAGCCCAGCATTTGCTGCCGCAACCCTTGGTCCAGTTTGATCTTAGACTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* *
20857278 GGAATGAAGTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGA
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * *
20857343 GCGTGCGGGCGCTCAGCCGGCCAAAGGGGCTGGATACGTAAGCCGAGGGTTGGCT-GGGT-CCCC
131 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG-GGGATCGATCGGGTCCCCC
* * * * * * *
20857406 TCTGCATGCTGCCAATCCTGCTGCTGCAACCCT-TAGTCTAGTCCGATCTTAGATTGGGAATGAA
195 TCTGCGTGCTGCCGATCCTGCT-CCGCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAA
* * *
20857470 CTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGTGGGTGGGTGGGCACTACGCCGGCT
258 CTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGCGGGCGGGTGGGCACTACGCCGGCC
20857535 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
319 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
20857600 TTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
384 TTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* **
20857665 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCA
449 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCA
* *
20857730 AGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATT
514 GGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
20857795 CTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAACTGTACAAGATTTTGTGACCATTTG
578 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
20857860 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
643 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
20857925 CTCTTTAAAGGGGTGCGACTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
708 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
20857990 ACCAGAACCCATCGCACATCATGTGCGCACACCCCCCCCGGCCCCCTCGATCGTTGGAACCCCAA
773 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCC-CGATCGTCGGAACCCCAA
* * **
20858055 TGCCGTCGGTTAGGTTCTCTGGCGATGCTTCGACGATGGTGCCCCGACGAAGAAAAATGTGG
836 TGCCGTCGGTCAGGTTCTC-GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAG
* *
20858117 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACACTCGGTCTGGTCCGATCTTAGATTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * * *
20858182 CGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACGA
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * *
20858247 GCGTGCGAGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGATCGGGTGCCCCT
131 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT
* * ** * * * *
20858312 CTGCATGCTGCCAATCCTTTTGCTGCAACCCT-TAGTCTGATCCGATCTTAGACTGGGAATGAAC
196 CTGCGTGCTGCCGATCCTGCT-CCGCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAAC
* *
20858376 TCCATATGCCTAAGCCAACCGACGAAACGA----GCGGGTGGGTGGGCACTACGCCGGCCAGAGA
259 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGA
20858437 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
324 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
** * ***
20858502 GCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAACATTCCCTTAAGCCTTCACGTGAAG
389 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * * * **
20858567 TTTCATGGCGAGATGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTGTACTGTTTGGGATT
454 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATT
* * * * *
20858632 TTTTAAAATTCTTTTGGAAGGAGTTTTGGCCCGAAACTTGGAAGACATGATCCTTGTATTTTTTT
519 TTTTAAAATT-TTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* ** * * *
20858697 TGGCATGCATAAAAAAATTCAATTAAAAAACACAAAGTGTACAAGATTTTGTGACCGTTTGAAAA
583 TGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * * *
20858762 AAGTGACCCCATTTCAAACACTTTAATTGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCT
647 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
20858827 TTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCA
712 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
20858892 GCACCCACCGCACATCATGTGCGCACA--CCCCCAGCCCCCCGATCATC-GAAACCCAATGCCGC
777 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGT
* * * * *
20858954 CGGTCAAGTTCTCTCGACGATGCTCCGGCGATGGTTGCCTCGACGAAG-AAAATGCGG
842 CGGTC-AGGT-TCTCGGCGATGCTCCGACGATGG-TGCCCCGACGAAGAAAAATGCAG
* * * * *
20859011 CA-CAGCACATGCTCGAGACCAGTATGTGCTACCACAACCCTCAGTCCAGTCCGATCTTAGACTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G---G----T---CT-
20859075 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
49 -G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * *
20859140 TATGCCTAAGTCAACTCAAGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGC
105 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * *
20859205 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGATCCG
170 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-CCGCAACCCTCGATCTG
*
20859270 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA----GCGGGC
234 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
*
20859331 GGGTGGGCACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTG
299 GGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
20859396 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGTTTGTAAATTCATAGAA
364 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
20859461 TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
429 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * *
20859526 TTGAAACTTTTTATGGTTCGGGATGTTTTAAAATTTTTTCGGAAGGAGTTCTGGCCCCAAACTTG
494 TTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTG
** *
20859591 GTAGATATGATTCTTGTATTTTT-TGTGGCATGCACAAAAAAA-TCAGCTAAAAACTCGAAGTGT
558 GTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * *
20859654 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCCGGACACTTTAGTGGTTACTGGTAG
622 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-CAGACACTTTAATGGCTACTGGCAG
* *
20859719 CAAACCTGTAAAATCTCAAATGCTCTATAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
686 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * * *
20859784 GAGGCCAATATAAGGGCCAAGTACAAGCACTCATCGCACATCATGTGCGCACGCCCTCCCGACCC
751 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCC
* *
20859849 CCCCGATCGTCGGAACCTCAATGCCGTCGGTCAGG---T------T-CTCCGACGATGGTGCCTC
815 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCGGCGATGCTCCGACGATGGTGCCCC
*
20859904 GACGAAGAAAAATGTAG
880 GACGAAGAAAAATGCAG
* * * *
20859921 CACCAGCGCATGCCCGAGCCCAACATGTGCTGCCGTAACCCTCGGT-TCGGTCTGATCTTAGACT
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACT
* * * * *
20859985 GGGAATGAACTCCGTATGCTTAGTCAGGGAATGAACTCTGTATGCCTAAGTCAACGCACGGAACG
65 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * *
20860050 AGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGA-CAGGGTCCCC
130 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCC
* ** * * * *
20860114 CTCTGTGTGCTGCTAATCCTGCTGCTGCAACCCTCGGTCTGGTTTGATCTTAGGCTAGGG-ATGA
194 CTCTGCGTGCTGCCGATCCTGCT-CCGCAACCCTCGATCTGGTCTGATCTTAGACT-GGGAATGA
** * *
20860178 ACTCCGTATGCCTAAGCCAA-CGACGAAACGAGTGGGCGGGCGGGCGGGCAGGCACAACGCTGGC
257 ACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGTGGGCACTACGCCGGC
20860242 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
318 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * *
20860307 ATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAACGGTCCCTTATGCCTTCAC
383 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
20860372 GTGAAGTTTCATGGCAAGACGACTAGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC
448 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC
* **
20860437 AGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGGCCCAAACTTGGTAGACGTGATAATTGTAT
513 AGGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
20860502 TTTTGTTGACATGAACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTT
577 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
20860567 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
642 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
20860632 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGCGATAGGGGGCCAATATAAGGGCCAAG
707 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
20860697 TACCAGCACCCATTGCACATCATCTGCGCACACACCCCCCGGCCCCCCAATCGTCGGAACCCTAA
772 TACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCGATCGTCGGAACCCCAA
* * **
20860762 TGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGG
836 TGCCGTCGGTCAGGTTCTC-GGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAG
* * * * *
20860824 CATCAGCACATGCCCGAGCCTAGGATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTACACTG
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
* * *
20860889 GGAATGAACTCCATATGCTTAGACTAGGAATGAACCCCGTATGCCTAAGTCAACCCACGAAACGA
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* ** * * *
20860954 GCGTGCGGGCGCTCAGTCGGCCAGAGGGATGGGATGCGCAAGCCAGGGATCGATCTGGTCCCCCA
131 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT
** * * * * * *
20861019 CTATGTGCTGCCGATCCTGCTATCGGAACCCTCTATCCGGTCTGATCTTATACTAGGAATGAACT
196 CTGCGTGCTGCCGATCCTGCT-CCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACT
* * *
20861084 CCGTATGCCTAAGCCAACCGATGAAACGAACGGGCGGACGGGTGGGCACTACGCCGGCCAGAGAG
260 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAG
*
20861149 ACGGGATGCCCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT-GGTCACATCTTCATATTTCT
325 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-CACATCTTCATATTTCT
** * *
20861213 GCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTACCTTAAGCCTTCACGTGAAG
389 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * *
20861278 TTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTT-TGGATT
454 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATT
* ** *
20861342 TTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGAAAGACGTGATCCTTGTATTTTTTT
519 TTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
20861407 TGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAATA
583 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
20861472 AGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCGGCAAACCTATAAAATCTCAAATGCTCTT
648 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
20861537 TAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
713 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* ** * **
20861602 CACCCATCGCACATCATGTGTGCACACCCCCTTTGGCTCCCTCGATCACCGGAACCCCAATGCCG
778 CACCCATCGCACATCATGTGCGCACACCCCC-CCGGC-CCCCCGATCGTCGGAACCCCAATGCCG
* * **
20861667 CCGGTCAGGTTCTTCGGTGATGCTTTGACGATGGTGCCCCGACGAAGAAAAATGCAG
841 TCGGTCAGGTTC-TCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAG
* * * * *
20861724 CACCAGCACATGCTCGAGCCCAGCATGTGCTGTCAG-AACCCTCGGT-TCGATTCGATATTAGAC
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTG-CCGCAACCCTCGGTCT-GGTCCGATCTTAGAC
* * ** * *
20861787 TGGGAATGAACTCCGTATGCTTAGATTGGGAATAAACTTGGTATGCCTAAGTCAACCCACAAAAT
64 TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* *
20861852 AAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-AACTGGGTCCC
129 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCC
* * ** *
20861916 CCTCTGCGTGCTGCGGATCCTACTGCCATAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGA
193 CCTCTGCGTGCTGCCGATCCTGCT-CCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGA
* * * *
20861981 ACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCAGGCGGGCGGGCACTACGCTGGC
257 ACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGTGGGCACTACGCCGGC
* *
20862046 CAGAGAGACCGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCAT
318 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * *
20862111 ATTTTTGTGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCAT
383 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * *
20862176 GTGAAGTTTCATGGGAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGATTC
448 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC
* * * * *
20862241 GGGATTTTTTTAAA-TTTTTCAGAAAGAG-TTTGGCCCCAAAATAGGTAGACGTGATCCTTGTAT
513 AGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
20862304 TTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
577 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
20862368 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGCAAAATCTCAAAT
642 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
20862433 GCTCTTTAAGGGGATGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCATG
707 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * **
20862498 TACCAGCACCCATCGCACATGATGTGCGCACAACCCCCCTGGCCCCCCAGATTGCCGGAACCCTT
772 TACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGGCCCCCC-GATCGTCGGAACCCCA
* * * * * *
20862563 ATGCCGCCAGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGA-GAAGAAAAATGCAA
835 ATGCCGTCGGTCAGGTTCT-CGGCGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCAG
* * *
20862626 CACCAGCACATGCCCGTGCCCAGCATGTGCTGCCGTAA--CAC--T-T-G---G-TC-----C--
1 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
*
20862674 -----G-A-TCCG-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA
66 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * * *** ** *
20862730 GCATACGGGCACTCAGTCGACCAGAGGGGCGGGATTCGTAAGTAAGGGATCGGCCGAGTCCCCCT
131 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT
* * * * * * *
20862795 CTGCATGCTGTCGATCCTGTTGCCACAACCCTCGGTCCGGT-TCGATCTTGGACTGGGAATGAAC
196 CTGCGTGCTGCCGATCCTGCT-CCGCAACCCTCGATCTGGTCT-GATCTTAGACTGGGAATGAAC
*
20862859 TCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCGGGC
259 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
20862899 CGGCGGGTTT
Statistics
Matches: 5008, Mismatches: 568, Indels: 252
0.86 0.10 0.04
Matches are distributed among these distances:
872 9 0.00
875 1 0.00
876 174 0.03
877 3 0.00
878 4 0.00
879 1 0.00
880 1 0.00
884 11 0.00
885 195 0.04
886 5 0.00
887 4 0.00
890 1 0.00
891 1 0.00
892 443 0.09
893 115 0.02
894 37 0.01
895 29 0.01
897 281 0.06
898 196 0.04
899 278 0.06
900 683 0.14
901 71 0.01
902 552 0.11
903 400 0.08
904 619 0.12
905 111 0.02
906 2 0.00
907 1 0.00
909 16 0.00
910 22 0.00
911 29 0.01
914 1 0.00
917 55 0.01
918 140 0.03
919 481 0.10
920 5 0.00
921 14 0.00
922 17 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (896 bp):
CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTG
GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT
CTGCGTGCTGCCGATCCTGCTCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGA
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGT
GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTT
TTAAAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
CAGGTTCTCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAG
Found at i:20864427 original size:26 final size:26
Alignment explanation
Indices: 20864398--20864449 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
20864388 CGATCTGATA
20864398 TTAGACTGGGAATAAACTCTGTATGC
1 TTAGACTGGGAATAAACTCTGTATGC
*
20864424 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTGGGAATAAACTCTGTATGC
20864450 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCTGTATGC
Found at i:20864951 original size:895 final size:895
Alignment explanation
Indices: 20862903--20868899 Score: 7215
Period size: 902 Copynumber: 6.8 Consensus size: 895
20862893 GCGGGCCGGC
* ** *
20862903 GGGTTTAGGCACATCTTAATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCA
1 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
20862968 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATT
66 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * ** * *
20863033 TTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGAAAAAATTTTTGGGCCCAAACT
131 TTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * * *
20863097 TGGTAGACGTGATACTTGTATTTTTGTTGACAGGAACAAAAAAATTCAGCTAAAAACTCAAAGTG
195 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
20863162 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
260 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * *
20863227 CAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGGTAAGGGATAG
325 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
20863292 GGGGCCAATATAAGGGCCAAGTA-CAGCACCCATTGCACATCATGTGCACACACACCCCACGGCC
390 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC-CGGCC
* * *
20863356 CCCCAATCGCCGGAACGCC--ATGCCGTCGGTCAGGTTCTCTGGCAATGCTCCGACGATGGTGCC
453 CCCCGATCGCCGGAAC-CCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
* * * * * * *
20863419 CTGGCAAAGAAAAATGTGGCATCAGTACATGCCCGAGCCCAGGATGTGCTGCCGCAACCCTCGGT
517 CCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * ** * *
20863484 CCGGTCCGATCTTAAACTGGGAATGAACTCCATATGTTTAGACTAGGAATGAACTCCGTATGCCT
582 CCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** * * * *
20863549 AAGTCAACCCACGAAATGAGCGTGCGGGCACTCAGCCCACCAGAGGGGTGGGATTCGTAAGTCGG
647 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* ** * *
20863614 GGATCGATCGGGTCCCCCTCTACATGCTATCGATCCTGCTGCCACAACCCTCGGTCCGAT-TCGA
712 GGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCT-GA
* * **
20863678 TCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAAGAAACAAGCGGGCGGGCCGACGG
776 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AAC-AGCGAACGGG-CG--GG
* * *
20863743 ACGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGT
836 -CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA-GT
* *** *
20863805 GGGCTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTATTATGGCTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
20863870 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCAAGATT
66 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
*
20863935 TTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACT
131 TTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
**
20863999 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAATTAAAAACTCGAAGTG
195 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
20864064 TACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAG
260 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
20864129 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCCAGGTTTGATGAGGGATAG
325 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
20864194 GGGGCCAATATAAGGGCCAGGTACCAGCACCCTTCGCACATCATGTGTGCACACCCCCCGGCTCC
390 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CC
* * * * *
20864259 CTCGATTGTCGGAACCCTAATGCCATTGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
454 CCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* * * *
20864324 GATGAAGAAAAATACGTCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
519 GACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
20864389 GATCTGATATTAGACTGGGAATAAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAA
584 GATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
20864454 GTCAGCCCATGAAACAAGCGTGCGAGCGCTCAGTCGGCCAGAGGGGCGGGATGCGTAAGCCAGGG
649 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * *
20864519 ATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCACAACCCTCAATCCGGTCTGATCT
714 ATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCT
* * * *
20864584 TAGACTGGGAATAAACTCCGTATGCCTAAGCCATCCGATG-A-AGCGAATGGGCGTGCGGGCACT
779 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAACAGCGAACGGGCGGGCGGGCACT
* * * *
20864647 ACGTCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGCGGTAACT
844 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT-AGT
* * * * * *
20864700 CGATTTAGGAACATCTTCATATTTCGGCATGCCAATGCCATTTTAATGGCTTGTAAATTCATAAA
1 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
** * * * * *
20864765 ATGGTAACTTAAGCCATCACGTGAAGTTTCATGGCAGGATGACTCGTTTTCTATTTTTCACAAAT
66 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * * * *
20864830 TTTGAAACTTTTTACAGTTCGAGAGTTTTTAAAATTTTTTCGGAAGGAGGTTTGGCCCCAAAGTA
131 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
20864895 GATAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAACTGT
196 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
20864960 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTTAGTCACTTTAATGGCTACTGGCAGC
261 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
20865025 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATTGG
326 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
20865090 GGGCCAATATAAGGGCCAAGTACCAGCATCCATGGCACATCATGTGCGCACACCCCCCCGGCTCC
391 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC-CC
* *
20865155 CCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCC
454 CCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* * * * *
20865220 GACGAAGAAAAATGTGGCACCAGCACATGCCCGATCTCAACATGTGCTGCCGCAACCCTCGGTCT
519 GACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
20865285 GATCTGATCTTATATTGGGAATGAACT-TCGTATGCTTAGACTGGGAATGAACTACGTATGCCTA
584 GATCTGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
20865349 AGTCAACCCACAAAACGAGCGTGCGGGTGCTCCGTCGGCCAGAGGGGCGGGATGCGCAA-CTCGA
648 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-CGG
* * * * * * * **
20865413 GGATCGACCTGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGCAACCCTC-GATTCGATCCAA
712 GGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAG-TCCGGTCTGA
* * * *
20865477 TCTTAGACTGGGAATGAACTCCATATGCCTAAGCGAACCGACAGAATGAGCGAACGGGCGTGTGG
776 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-TGAA-CAGCGAACGGGC----GG
* * * * * *** *
20865542 GTGGGCACAACGCCGACCAGAGAGACGGGATGCACAAGTCGTGGATCGATAGGGAATTCGAT
835 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG-T
* ***
20865604 GGGTTTGGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
20865669 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATT
66 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * **
20865734 TTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA-TATTTATCCCCAAACT
131 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT-TTTGGCCCCAAACT
* * *
20865798 TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
195 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
20865863 TACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGCCAG
260 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
20865928 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGACGAGGGATA-
325 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * *
20865992 GGGGCCAATATAAAGGCCAAGTACCAGCACCTATCGCTCATCATGTGCGCACACCCTCCCGACCC
390 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCC
* * * * * *
20866057 CTCTGATCACCAGAACCCTAATGTCGTGGGTCAGGTTCTCCGACGATGCT-C--CGA--------
454 C-CCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
* * * * *
20866111 C-A--AAGAAAAATATGGCACCAGCACATGTCTGAACCCAGCATGTGCTGCCGTAACCCTTGGTC
518 CGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * *
20866173 CGGTCTGAACTTAGACTGGGAATGAACT-TCGTATGCTTAGATTGGGAATGAACTCTGTATGCCT
583 CGATCTGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
20866237 AAGTCAACCCACGAAATGAGTGTGCGGGCTCTCAGCCGGCTAGAGGGGTC-GGATGCGCAAGCCG
647 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-CGGGATGCGCAAGCCG
* * ** ** * * * * *
20866301 GGGATCGACCGGGTCCCCCGCTGTGTGCTGTTGATCTTGCTGTCATAAGCCTCAGTCTGGTCTGA
711 GGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGA
* * **
20866366 TCTTAGATTGGGAATGAATTCCGTATGCCTAAGCCAA-C--T-------G-ACGGG-ATGC--GC
776 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAACAGCGAACGGGCGGGCGGGC
* * *
20866417 A--A-GCC-GTC---GA-TC--GAT-----A-----GG---G-T--GGTAG--GT
841 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGT
* *
20866444 GGGTTTAGGTACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
20866509 ATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATT
66 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
20866574 TTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTCCAGAAGGAGTTTTGGCCCCAAACTT
131 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
20866639 GGTAGATGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGT
196 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
20866704 ACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
261 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
20866769 AAAACTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGG
326 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
20866834 GGGCCAATATAAGGGGCAAGTACCAGCAACCATCGCACATCATGTGTGCACACCCCCCAGGCCCC
391 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GG-CCC
* * *
20866899 CCCGATTGCCGAAACCCTAATGCCGTCGGTTAGG---T-------T-CTCCGACGATGGTGCCCC
454 CCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* * *
20866953 GACGAAGAAAAATACGG-ACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTC-ACCATCGGTC
519 GACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG-CAACCCTCGGTC
* * * * * * *
20867016 CGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGATTTAACTCCATATGCCAA
583 CGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * ** * *
20867081 AGTCAACCCACGAAACGAGCTTGCGGGTGCTCAGCCAACCAGAGGGGCAGGATGCACAAGCCGGG
648 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * * ** **
20867146 GATCGGTCAGGTCCCCCTTTGCGTGCTGCCAATCTTGCTACCGTAACCCTCAGTCTAGTCTGATC
713 GATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATC
* * * * *
20867211 TTAGGCTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGC-ACGCGGGTGGGCGGG
778 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AAC-AGCGA-AC----GGGC--G
* *
20867275 CGGACGGGCAGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGTCGTGGATCGATAGGGTGGT
834 -GG-C--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
20867340 AGGT
893 A-GT
* * *
20867344 GGGTTTAGGCAAATCTTCATATTTCTTCATGCCAATGCCATTTTTTGTGGCTTGTAAATTCATAC
1 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATAC
** ** * ** *
20867409 AATGGTCATTTAAGCCTTCACGTGAAGTTTCATGGCATTAGGACTTATTTTTTATTTTTCACGAT
65 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
20867474 TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGTGTTTTGGCTCGAAACT
130 TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * *
20867539 TGGTAGACGTGATCCCTGCATTTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAAC-CTGAAG
195 TGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-GAAG
*
20867603 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGC
258 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
20867668 AGCAAACCTGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAGTTCTTGAAGTTTGATGAGGCAT
323 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
20867733 AGGGGGCCAATATAAGGGCTAAGTACTAGCACCCATCGCACATCATGTGCACACACCCCCTAGGC
388 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGG-
* * * * *
20867798 CCCCCCGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCTGATGATGGTGC
451 CCCCCCGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGC
* * * * * *
20867863 CCCGGCGAAGAAAAATGTGGCACCAACAAATGCTCGAGCCCAGCATGTGCTGCTGCAA----C--
516 CCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
20867922 -CC--TC-GATC-----C--GG--T----T-TG-AT-CTTAGACTGGGAATGAACTCCGTATGCC
581 TCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
20867967 TAAGTCAACCCACAAAACGAGCGTACGGGCGCTCAGCCAGCCAGAGGGG-GGAGATGTGCAAGCC
646 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG-GATGCGCAAGCC
* * * * * * * *
20868031 GGGGATTGATCGGGTCCCTCTCTGCGTGCTGCCGATCCTGGTGCCACGACGCTCGGTCAGGTCTG
710 GGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCTG
20868096 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAGACGGGCAAGCGGGCG
775 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AACAG-C--G-AA-CGGGCG
* * * * *
20868161 GGCGGGCACTACGCCGACCAGAAAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGC
834 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA-GT
*
20868224 GGGTTTAGGCACATCTTCATATTCCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
1 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
20868289 ATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATT
66 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
20868354 TTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTCCAGAAGGAGTTTTGGCCCCAAACTT
131 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
20868419 GGTAGATGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGT
196 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
20868484 ACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA-C
261 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
20868548 TAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT-ATTGAGGGATA
326 -AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA-TGAGGGATA
* *
20868612 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGACCC
389 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * ** *
20868677 CCCGATCGTCGGAACCCCAATGCCG-CTAGTCAGGTTCTCTAGTGATGCTCCGACGATGGTGCCC
454 CCCGATCGCCGGAACCCTAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
* * *
20868741 CGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATTTGCTACCGCAACCATCGGTC
518 CGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * *
20868806 CGATCTGATCTTAGATTGGGAATGAACTCCGTGAT-CTTAGATTAGGAATGAACTCCGTATGCCT
583 CGATCTGATCTTAGACTGGGAATGAACTCTGT-ATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
20868870 AAGCCAACCGACGAAACGAGTGGGCGGGCG
647 AAGTCAACCCACGAAACGAGCGTGCGGGCG
20868900 GACAGGCAGG
Statistics
Matches: 4366, Mismatches: 570, Indels: 318
0.83 0.11 0.06
Matches are distributed among these distances:
830 2 0.00
831 2 0.00
833 3 0.00
838 1 0.00
840 361 0.08
841 79 0.02
842 6 0.00
843 232 0.05
844 13 0.00
845 1 0.00
846 1 0.00
849 2 0.00
854 1 0.00
856 1 0.00
859 3 0.00
860 3 0.00
861 1 0.00
862 2 0.00
864 1 0.00
865 2 0.00
866 3 0.00
867 1 0.00
869 3 0.00
871 4 0.00
873 1 0.00
874 3 0.00
875 3 0.00
876 112 0.03
877 4 0.00
878 217 0.05
879 155 0.04
880 90 0.02
881 3 0.00
882 1 0.00
883 2 0.00
884 1 0.00
885 4 0.00
886 6 0.00
887 3 0.00
888 176 0.04
889 239 0.05
890 4 0.00
891 4 0.00
892 3 0.00
893 2 0.00
894 1 0.00
895 452 0.10
896 327 0.07
897 7 0.00
898 3 0.00
899 9 0.00
900 52 0.01
901 161 0.04
902 707 0.16
903 416 0.10
904 402 0.09
905 3 0.00
907 2 0.00
910 1 0.00
912 1 0.00
913 31 0.01
914 30 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (895 bp):
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
CGATCGCCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGA
TCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
CGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAACAGCGAACGGGCGGGCGGGCACTAC
GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGT
Found at i:20866218 original size:26 final size:26
Alignment explanation
Indices: 20866182--20866234 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
20866172 CCGGTCTGAA
20866182 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
*
20866208 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20866234 C
1 C
20866235 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20867054 original size:26 final size:26
Alignment explanation
Indices: 20867025--20867077 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20867015 CCGATCCGAT
*
20867025 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* * *
20867051 CTTAGATTGGGATTTAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20867077 C
1 C
20867078 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20868843 original size:26 final size:26
Alignment explanation
Indices: 20868811--20868863 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20868801 CGGTCCGATC
*
20868811 TGATCTTAGATTGGGAATGAACTCCG
1 TGATCTTAGATTAGGAATGAACTCCG
20868837 TGATCTTAGATTAGGAATGAACTCCG
1 TGATCTTAGATTAGGAATGAACTCCG
20868863 T
1 T
20868864 ATGCCTAAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
TGATCTTAGATTAGGAATGAACTCCG
Found at i:20873966 original size:26 final size:26
Alignment explanation
Indices: 20873937--20873989 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20873927 CCGATCCGAT
* * *
20873937 CTTAGACTGGTAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20873963 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20873989 C
1 C
20873990 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20874873 original size:26 final size:26
Alignment explanation
Indices: 20874834--20874886 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20874824 CTGATCCAAA
* *
20874834 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
20874860 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
20874886 C
1 C
20874887 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:20876058 original size:884 final size:887
Alignment explanation
Indices: 20869551--20880289 Score: 13101
Period size: 884 Copynumber: 12.0 Consensus size: 887
20869541 CCGGTCCGAT
*
20869551 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * * *
20869616 CGACCAGAGGGGCGGGATGCATAAGTCGAGGATCGGCCAGGACCCACTCTGCGTGCTACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * ** * * *
20869681 TACTGCTGCAACCCTTGGTCCGATCCAATCTTAGACTAGGAATGAACTCCATATGCCTAATCCAA
131 TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *** *
20869746 TCGACGAAACGAGCGGGTGGTG--GGCGGGCACTACGTTAGCCAGAGAGACGGGATGCGCGAGCC
196 CCGACGAAACGAGTGGGCGG-GCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
20869809 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAGTGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
*
20869874 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
20869939 TCGTTTTCTATTTTTCACGATTTTTGAAA-TTTTT-TGCGATTCGAGATTTTTTGAAATTTTTTC
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATG-G-TTCGGGATTTTTTAAAATTTTTTC
* * * *
20870002 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGTACAAAAC
453 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
20870067 AATTCAGCTAGAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
20870132 AACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
20870197 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCACACATT
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
20870262 ATGTGCGCACAGCCCCCCCGGCTCCCCCAATCG-TCAGAACCCCAATGCCGCCGGTCAAGTTCTC
713 ATGTGCGCACA--CCCCCCGGC-CCCCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTCTC
* ** * * * * *
20870326 TGACAATGGTGCCCTGACGAAGAAAAATGCGGCACCAGC-CATTTCTCGAGCCCAGCATGTGCTG
774 CGATGATGATGCCCCGACGAAGAAAAATGAGGCACCAGCACA-TGCCCGAGCCCAGCATGTGCTG
* ** * *
20870390 CCACAACCCTCGGTCGGGTCCGATCTTAGACTGGGAATGAGCTCCATATG
838 CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * *
20870440 CTTAGACTGGGAATGAACTCCGTACGCC-ACAGTCAACCCACGAAACGAGCGTTTGGGCACTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTA-AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * *
20870504 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAAGTCCCCCTTTGCGTACTGCTGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATC
* * * * *
20870569 CTACTGCCGTAACCCCCGGTCTGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 CTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * *
20870634 ACCGATGAAACGA----GCGGGCAGG-GGGCACTACGCCGGCC-GAAGAGATAGGATGCGCATGT
195 ACCGACGAAACGAGTGGGCGGGCAGGCGGGCACTACGCCGGCCAG-AGAGACGGGATGCGCAAGC
* * *
20870693 CTTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
*
20870758 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGAC-A
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * **
20870822 CCCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTA
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * *
20870887 GAAGGAGTTTTGGCCACAGACTTGGTAGCCATGATCCTTGTATTTTTTATTGGCATGCACAAAAA
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAA
* *
20870952 AATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
20871017 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
20871082 TCTCAAGATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
20871147 ATGTGCGCACACCCCCCCGGCCCCCCGATCG-TCGGAACCCCAATGCCGTCGGCCAGGTACTTCG
713 ATGTGCGCACA-CCCCCCGGCCCCCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGG----T--
* * ** *
20871211 GCGATGCTCCGATGATGGTGCCCTGGGGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
770 ----T-CTCCGATGATGATGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGC
*
20871276 ATGTGCTGCTGCAACCCTC-G---A-TCCG------G--T-----T----T--G-AT-
830 ATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20871308 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
20871373 CAGCCAGAGGGGCGAGATGTGCAAGCCGGGGATCGACTGGGTCCCTCTCTGCGTGCTACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * ** * *
20871438 TGCTGCCGCAACCCTCAGTCCAAT-TCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCA
131 TACTGCCGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20871502 TCCGACGAAACGAAT----GGGCAGGCGGGCACTACGCCGGCCAGAGAGATGTGATGCGCAAGCC
195 ACCGACGAAACGAGTGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
20871563 ATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
* * *
20871628 TTATGGCTTGTAAATTCATACAATGTTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
20871693 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGG
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGG
* *
20871758 AAGGATTTTTGGCCCCAAACTTTGTAGACGTGATCCTTGTATTTTCT-TTGGCATGCACAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT-TGTTGGCATGCACAAAAAA
* * * * * *
20871822 CTTTAGCTAAAAAGTCAAAGTGTACAAGATTTTGTGACCAATTGAAAAAACTGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * * * * *
20871887 ACACTTTAATGGCTACTAGTAGCAAGCCTGTAGATTCTCAAATGCTCTTTAAGGGGATGTGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * **
20871952 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAATACTAGCACCCATTGCATGTCA
649 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
20872017 TGTGCGCACACCCCCTGGCCCCCCCGATCG-TCGGAACCCTAATACCGCCGGTCAGGTTCTCCGA
714 TGTGCGCACACCCCCCGG-CCCCCCGATCGCT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
** * *
20872081 TGATGCTCCGGTAATGGTGCCCCGGTGAAGAAAAATGCA-GCACCAGTACATGCTCGAGCCCAGC
777 TGA---T---G--A---TGCCCCGACGAAGAAAAATG-AGGCACCAGCACATGCCCGAGCCCAGC
* * * * * * *
20872145 ATGTGCTGCCGCAACCCTTGATCTAGTCTGATCTGAGACTGTGAATGAACTCCATATG
830 ATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * * *
20872203 CTTAGATTGCAAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * * *
20872268 CAGCCAAAGGGGTGGGATGCGCAAGCTGGGGATTGGCCGGGTCCCCCAT-TGCATG-GAGTCAAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCC-TCTGCGTGCTA-CCGAT
* ** * * * * * *
20872331 CCTGCTATCGTAACCCCTCGGTCTGGTCTGACCTTATACTAGGAATGAATTCCGTATGCCTAAGC
129 CCTACTGCCGCAA-CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* ** *
20872396 CAACCGATGAAACGA----GC--G--GGTTGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAG
193 CAACCGACGAAACGAGTGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * *
20872453 CCGTCGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG-GCCAAAGCTAT
258 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * * * *
20872517 TTTTCTGGCTTGTAAATTCATACAATTGTCCCTTAAACCTTCACATGAAGTTTCATGGCAAGATG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
20872582 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTCTATGGTTCGGGATTTTTTAAAATTTTTTT
388 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAA-TTTTTT
* *
20872647 TGGAAGG-GTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCAT-CACAAA
452 CGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
20872710 AAATTTCAGCTAAAAA-TCGAGGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
20872774 CAAACAC-TTAATGGCTATTGGTAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
20872838 GTTCTCGAGGTTTGATGAGGGATA--GGGCTAATATAATGGCCAAGTACCAGTACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** *
20872901 TAATGTGCGCACACACCCCCTGGCCCCCCGATCGCCAGAA-CCCAATGCCGTCGGTCAAGTTCTC
711 TCATGTGCGCACAC-CCCCC-GGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTC
** * * *
20872965 CGGCGATGGTGCCCCGACGAAGAAAAAT-ACGACACCAGCACATGCCCGAGCCCAGCATTTGCTG
774 CGATGATGATGCCCCGACGAAGAAAAATGA-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
20873029 CTGCAACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATG
838 CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** *
20873079 CTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
20873144 CGGCCAGAGGGGCGGGATACGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGCATGCTACTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * **
20873209 TGCTGCCGCAACCCTCGGTCCGATCCCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
20873274 CCGACGAAACGA----GCGAGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGTTGCGCAAGCCG
196 CCGACGAAACGAGTGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
** *
20873335 TGGATCGATAGGACGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTACGTGCCAATGCCATTTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
*
20873400 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** ** * * *
20873465 CGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAACTTTTTTCAGA
391 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
20873530 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAAT
456 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
20873595 TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGAC
521 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
20873660 ACTTTATTGGC-AGTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGGGTTCT
586 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
20873724 CGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCACATCATG
651 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * ** * *
20873789 TGTGCACACCCCACCTGGGCCCCCCGATCACCAGAACCCCAATGCCGTCGGTCAGGTTATCCGAC
716 TGCGCACACCCC-CC--GGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGAT
* * ** * * * *
20873854 GATGGTGCCCCGACGAATAAAAATCCGGCACAACCACATGCCTGAGCCCAGCATGTGCTG-TGCA
778 GATGATGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* *
20873918 ACCCTCGGTCC-GATCCGATCTTAGACTGGTAGTGAACTCCGTATG
843 ACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * * *
20873963 CTTAGACTGGGAATGAACTCCATATGCCTAAGTTAACCCACGAAATTAGTGTGC-GGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
20874027 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTTCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* ** * * * *
20874092 TGCTGCCAAAACACTCAG-CCGGTCTGATCTTAGACTGCGAATGAACTTCGTATGCCTAAGCCAA
131 TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
20874156 CCGACGAAACGAGCTGGCAGGCGGGCGGGCGGGCACTACGTCGGCCAGAAAGGCAGTATGCGCAA
196 CCGACGAAACGAG-T-G--GGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * ** *
20874221 GCTGTGGAACGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAATTT-TGTGTACCAATGCC
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTACGTGCCAATGCC
*
20874285 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
20874350 CGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
* * * *
20874415 TCGGAAGG-GATTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATCCACAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
20874479 AAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
20874544 CAGACATTTTAATGGCTACTGGTAGCAAACCTGCAAAATCTCAAATGCACTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
20874609 GTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
20874673 TCATGTGCGCACACCCCCCGG-CCCCCGATCGCCGGAACCCCAATGTCGCTGGTCAGGTTCACTG
711 TCATGTGCGCACACCCCCCGGCCCCCCGATCGCTGGAACCCCAATG-C-C--GTC-GG-TCA---
* ** * *
20874737 GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT-ACGACACCAGCACATGCCCGAGCCCAG
767 G-G-TTCTCCGATGATGATGCCCCGACGAAGAAAAATGA-GGCACCAGCACATGCCCGAGCCCAG
* * * * * * *
20874801 CACGTGCTGCCGTAACCCTCAGT-CTGATCCAAACTTAGACTGGGAATGAACTTCGTATG
829 CATGTGCTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20874860 CTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCTATGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *** * **
20874925 CGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTTGGGTCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * * * *
20874990 TACTACCACAACCCTCGATCCGGTCTGATCTTAGATTGGGAATGAATTTCGTACGCCTAAGCCAA
131 TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * *
20875055 CCGACGAAACGAGCAGACGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGAGATGCACAAGCCG
196 CCGACGAAACGAGTGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
20875120 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-AGCATGCCAATGCCATTT
261 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CGTGCCAATGCCATTT
20875184 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
*
20875249 TCATTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGG
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGG
** * *
20875314 AAGGAGTTTTGGGTCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGTAAAAAAAAA
455 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
20875378 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCTTTTGAAAAAAGTGTCCCTATTTCAGA
520 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
20875443 CACTTTAATGGCTACTTGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
585 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * ** * *
20875508 TTGAGGTTTGATGAGGGGTAGGGGGTGAATATAAGGGTCAAGTACCAGCACCCATTGCACATCAT
650 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
20875573 GTGCACACACCCCCCGGCCCCCTCGATCGCTGGAACCCCAATGTCGTCGGTCAGGTTCTCC-A-G
715 GTGCGCACACCCCCCGGCCCCC-CGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATG
* * * *
20875636 -TGATGCCCCGACGAAGAAAAATGAGGCACCAGCACAAGCCCAAGCCCAGCAAGTGCTGCCACAA
779 ATGATGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* *
20875700 CCCTCAGTCCAGTCCGATCTTGGACTGGGAATGAACTCCGTATG
844 CCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * *
20875744 CTTAGACTGGGACTGAACTCCGTATGCCTAAGTCAACCCATAAAACGACCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
20875809 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
** * ** * * * *
20875874 TACTATCGTAACCCTCAATCTGATCCT-ATCTTAGACTTGGAATGAACTCCCTATGCCTAAGCCA
131 TACTGCCGCAACCCTCGGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
20875938 ACCGACGAAACGAGTGGGCGGGCAGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT
195 ACCGACGAAACGAGTGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * ** * *
20876003 GTGGATCAATAGGGTGGTAGGTTGGTTTAGGTGCATCTTCATTTTTCTACATGCCAATGCCATTT
260 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
*
20876068 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGCAAGACGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * * *
20876133 TTGTTTTCTATTTTTTTGATGATTTTTGAAACTTTTTGTGGTTCGAGATTTTTGAAAATTTTTTT
390 TCGTTTTCTA--TTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
20876198 GGAAAGAGTTCTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATTCACAAAAA
453 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
20876263 AATTCAGCTAAAACCTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCT
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
20876328 GACACTTTAATTGCTACTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
20876393 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCAATCGTATAT
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCCATCGCACAT
* * *
20876458 CATGTGCGCACACCCCCCAGCTCGCCCGATCGCTGGAACCTCAATGCCGTCGGTCAGGTTCTCTG
712 CATGTGCGCACACCCCCCGGC-CCCCCGATCGCTGGAACCCCAATGCCGTCGGTCA--------G
* * * * *
20876523 GTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACCCCAGCACATGCCCGAGCCCAGC
768 GT--T-CTCCGATGATGATGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGC
* * * * *
20876588 ATGTG-TGGCTGCAACCCTTGATCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATG
830 ATGTGCT-GCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20876646 CTTAGACTGGGAATGAACTCCATATGCTTAAGTCAACCCATGAAACGAGAGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * *
20876711 CAGTTAGAAGGGCGGGATGCGTAAGCCGAGGATCGACTGGGTCCCCCTCTACGTGCTACCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * * * *
20876776 TGCTGTCGCAACCCTCAGTCTC-ATCTGATCTTAGACTGGGAATGAACTCCGTAAGCCTAAGCCA
131 TACTGCCGCAACCCTCGGTC-CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
20876840 ACCGACGACACGAGCGGGCGAGCAGTCGCGCGAGCGGGCACAATGCCGGCCAGAGAGACGGGATG
195 ACCGACGAAACGAGTGGGC--G--G--GC-AG-GCGGGCACTACGCCGGCCAGAGAGACGGGATG
* * *
20876905 CGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTGTACGTGCCAA
252 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
* * * *
20876970 TGCCATTTTTATGGCTTGTAAATTCATAGAATGGT-CCTTAAGCCTTCGCGTGAAGTTTGATGGT
317 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
20877034 GAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
382 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAAT
* *
20877099 TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC--------TTGTTGGCATTCA
447 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * *
20877156 AAAAAAAATTCAGCTAAGAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
512 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
20877221 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAACATCTTAAATGCTCTTTAAGGGGGT
577 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
20877286 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
642 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
20877351 CACATCATGTGCGCACACCCCCCGACCCCCACGATCG-TCGGAACCCCAATGCCGTCGATCAAGT
707 CACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGCT-GGAACCCCAATGCCGTCGGTCAGGT
* * *
20877415 TCTCCGGCGATGCTCCGATGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
770 TCT-C--CGA---T--GATGA---TGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAG
* * * * * *
20877480 CCCAACATGTGCTGCCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAACGAACTCCATATG
824 CCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20877544 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGATCGTACGAGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * ** *
20877609 CGGCCAAAAGGGTGGGATACGCAAGTCGGGGAAC-AGTCGGGTCCCCCTCTATGTGCTACCGATA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCGTGCTACCGATC
* ** * ** * *
20877673 GTACTATCGCAACCCTCGGTCTGGTCCAATCTTACACTGGGAATGAACTCTGTATGCCTAAGCCA
130 CTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20877738 ATCGACAAAACGAGCAGATGGGCGGG-GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAAC--G-AG-TGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * **
20877802 AGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCATATCTTCATATTTTTGCGTGTAAATGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
*
20877866 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** * *
20877931 TGACTCATTTTATATTTTTCATGATTTTCAAAACTTTTTACGATTCGGGATTTTTTAAAATTTTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
* *
20877996 TC-GAAGGAGTTTTGGCCCCAAAACTTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAA
451 TCGGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20878060 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGACAAAAGTGTCCCCGTT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
20878125 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AGGGCGGTGT
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GGTGT
*
20878189 GAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * ** *
20878253 CATCATGTGCGTACACCGCCCCTGACCCCCCGATCATTGGAACCCCAATGCCGTCGGTTAGGTTC
709 CATCATGTGCGCACACC-CCCC-GGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTC
* * * * *
20878318 TCCAGTGATGCCCGGTGATGGTGCCCCGGCAAAGAAAAAT-ACGGCACTAGCACATGCCGGAGCC
772 TCC---GA-------TGATGATGCCCCGACGAAGAAAAATGA-GGCACCAGCACATGCCCGAGCC
* * * *
20878382 CAGCATGTGCTG-TGACAACCCTTGGTCCAGTTCGATCTTAGATTGGGAATGAACTCCGTATG
826 CAGCATGTGCTGCCG-CAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20878444 CTTAGACTAGGAATGAACTCCGTATGCCTAACTCAACGCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ***
20878509 CGACCAGATGGGCGGGATGTGCAAGCCGGGAATCGATCGGGTCCCCCTCTGCGTGCTGTGGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* * *
20878574 TA-TAGCCACAACCCTCGGTCCGGTCTGATCCTAAACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TACT-GCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
20878638 ACCGACGAAACGAGCGGGTGGGCGGGCAGGCGGGCGAGCAGTACGCCGGCCAGAGAGACGGGATG
195 ACCGACGAAACGA----GTGGGCGGGCAGGCGGGC-A-C--TACGCCGGCCAGAGAGACGGGATG
* * *
20878703 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAA
252 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
*
20878768 TGCCATTTATATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT-ATTGG
317 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-TGG
* ** * ** * *
20878832 CAAGATGACTCGTTTTCTA-TTTTCATGATTTTCAAAAATTTTTACAGTTCAGGATTTTTTAAGA
381 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAA
* * *
20878896 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGGTCCTTGTATTTTTTTTGCCATGC
446 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
20878961 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
511 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
*
20879026 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
576 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
20879091 TGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATC
641 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
20879156 ACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGG
706 GCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGG
* * * *
20879221 TTCTCCGGTGATGCTACGGCGATGGTTCCCCAACGAAGAAAAAT-ACGGCACCAGCACATTCCTG
769 TTCTCC---GATG--A---TGAT-G--CCCCGACGAAGAAAAATGA-GGCACCAGCACATGCCCG
* ** * * *
20879285 AGCCTAGCATGTGCTGCCATAACCCTCGATCC-GCTCTGATCTTAGACTGGGAATGAACTCCATA
822 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTA
20879349 TG
886 TG
* ** * *
20879351 CTTAGATTGGGAATGAACTCTATATGCCTAAGTCAACTCACGGAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * ** * *
20879416 CGGCCAGAGGGGCGGGATGTGCAAGCTGGGGATCGGTCGTGTCCCCTTCTATGTGCTACCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
* ** * * *
20879481 TGCTGTTGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
20879546 CCGATGAAATGAGTGGGCGGGCGGGCGGGAGGGCAAGACGCCGGCTAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGTGGGCGGGCAGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * **
20879611 GCCGTGGATCGATAGGGTGGTAGGTGGG-TTGGGCACATCTTCATATTTTTGTGTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
*
20879675 TTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
20879740 AACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTCTGTAGTTCGGGA--TTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTT
* * *
20879803 CGGAAGGACTTTTGGCCCCAAACTTGGTAGATGTGATCCTTTTATTTTTGTTGGCATGCACAAAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
20879868 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
20879933 AGACACTTTAATGGCTATTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
**
20879998 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGTAAAGTACCAGCACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** * * *
20880063 CATGTGCGCACA-CCCCCGGCCCCCCCGATTACCGGAACCCCAATGCCGCCAGTCAGGTTCTCCA
712 CATGTGCGCACACCCCCCGG-CCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCT-C-
* * * *
20880127 GCGATGCTTCGACGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
774 -CGA----T----GATGATGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGC
*
20880192 ATGTGCTGCCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
830 ATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
20880250 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
20880290 TTTTTGGGGT
Statistics
Matches: 8583, Mismatches: 1012, Indels: 500
0.85 0.10 0.05
Matches are distributed among these distances:
858 9 0.00
859 1 0.00
861 1 0.00
864 1 0.00
865 1 0.00
867 1 0.00
868 189 0.02
869 449 0.05
870 99 0.01
872 1 0.00
873 1 0.00
874 4 0.00
875 60 0.01
876 203 0.02
877 2 0.00
879 138 0.02
880 144 0.02
881 118 0.01
882 64 0.01
883 160 0.02
884 653 0.08
885 473 0.06
886 98 0.01
887 256 0.03
888 79 0.01
889 446 0.05
890 341 0.04
891 150 0.02
892 231 0.03
893 159 0.02
894 78 0.01
895 494 0.06
896 212 0.02
897 97 0.01
898 412 0.05
899 425 0.05
900 325 0.04
901 483 0.06
902 393 0.05
903 103 0.01
904 3 0.00
905 280 0.03
906 238 0.03
907 345 0.04
908 3 0.00
909 42 0.00
910 118 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGTGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCCGATCGCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGAT
GATGCCCCGACGAAGAAAAATGAGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
CTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20876656 original size:26 final size:26
Alignment explanation
Indices: 20876620--20876675 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20876610 CCAGTCTGAT
* *
20876620 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20876646 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20876672 CTTA
1 CTTA
20876676 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20877554 original size:26 final size:26
Alignment explanation
Indices: 20877518--20877570 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20877508 TCGGTCTGAT
20877518 CTTAGACTGGGAACGAACTCCATATG
1 CTTAGACTGGGAACGAACTCCATATG
* *
20877544 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCATATG
20877570 C
1 C
20877571 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCATATG
Found at i:20878456 original size:26 final size:26
Alignment explanation
Indices: 20878418--20878470 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20878408 CCAGTTCGAT
* *
20878418 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20878444 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20878470 C
1 C
20878471 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20879361 original size:26 final size:26
Alignment explanation
Indices: 20879325--20879377 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20879315 CCGCTCTGAT
20879325 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
20879351 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
20879377 C
1 C
20879378 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20880253 original size:26 final size:26
Alignment explanation
Indices: 20880224--20880276 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20880214 CCAGTCCGAT
20880224 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20880250 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20880276 C
1 C
20880277 GTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20882539 original size:26 final size:26
Alignment explanation
Indices: 20882488--20882540 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20882478 CTAGTCCAAT
* *
20882488 CTTAGACTGGGAATGAACTTCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20882514 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20882540 C
1 C
20882541 CTATGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20883426 original size:26 final size:26
Alignment explanation
Indices: 20883386--20883438 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20883376 CTGGTCTGAT
20883386 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
20883412 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
20883438 C
1 C
20883439 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:20884311 original size:26 final size:26
Alignment explanation
Indices: 20884282--20884334 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20884272 CTGGTCCAAT
*
20884282 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20884308 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20884334 C
1 C
20884335 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20885209 original size:26 final size:26
Alignment explanation
Indices: 20885180--20885229 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
20885170 CTGGTCCGAT
20885180 CTTAGACT-GGAAATGAACTCCGTACA
1 CTTAGACTAGG-AATGAACTCCGTACA
20885206 CTTAGACTAGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
20885230 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 21 0.91
27 2 0.09
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTACA
Found at i:20885721 original size:890 final size:894
Alignment explanation
Indices: 20880305--20886098 Score: 7147
Period size: 889 Copynumber: 6.5 Consensus size: 894
20880295 GGGGTTCAGG
* * * * *
20880305 ATTTTTTAAAATTTTTTCGGTAGGAGTTTTGACCCCAAACTTGGTAGACGTAATCCTTGCATTTT
1 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
*
20880370 TGTTGGCATGCACAAAAAAAATTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACCATTTGA
66 TGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* ** *
20880435 AAAAGGTGTTTCCATTTCAGACACTTTAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAATGC
130 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
20880500 TCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGGCCCATATAAGGGCCAAGTA
195 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
20880565 CCAACGCCCATTC-CACATCGTGTGCGCACACCCCCCGGCCCCCTCAATCCTCGGAACCCAATTG
260 CCAGCACCCA-TCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCC-A-TG
* * * ** * * *
20880629 CCACCGGTCAGGTTCTCCGGTGATGTTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCA
322 CGATCGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCA
* * * *
20880694 GCACATGCCCAAGCCCAGCATGTGCTGCCGTAA----CG--C---T-CG------GTCT--G-AT
387 GCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAAT
* * *
20880740 ---CT--G-ATA-TTAGACTGAGAAAGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTG
452 GAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * ** * *
20880798 CAGGCACTCAGTTGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCTGTCGGGT-CCCCTCTGTG
517 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCG
* * * * * * * * * *
20880862 TGCTATCAATCTTGCTACCGCAACCCTTGATCCTGTCCAATCTTAGACTGGGAATGGACTTCGTA
582 TGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTA
* * * *
20880927 TGCCTAAGCCAACCGACGAAACGAGAGGGCGAACGGGCAGGCAGGCACTACACCGGCCAAAGAGA
647 TGCCTAAGCCAACCGACGAAACGAGACGG-G--CGGGC--G--GGCACTACGCCAGCCAGAGAGA
* * *
20880992 CAGGATGCGCAAGCCGTTGATCGAT-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGC
705 CAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCC
*
20881056 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
770 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
* * * ** * **
20881121 TCATGGCATGACGACTCGTTTTTTATTTTTCATGATTTTTTATCCTTTTTACAG-TTCAA
835 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGA
* *
20881180 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAACTTGGTATACGTGATCCCTGTATT
1 -ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATT
* * *
20881245 TTTCTTGGCACGCACAAAAAAATTCACCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
64 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
20881310 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACCTGTGAAATCTCAAATG
129 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
20881375 CTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGT
194 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
20881439 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCGTCGATCGTCGGAACCCCAAT
259 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCTCGATCGTCGGAA-CCC-AT
* * * * * ** *
20881504 GCCACCGGTCAAGTTCTCCGGCTATACTCCAACGATGGTGCCCCGACGAAGAAAAATACGGCACC
321 GCGATCGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACC
* * * **
20881569 AGCACATGCCCGAGCCTAGCATATGCTGTTGCAACCCTC-A----GTCCGATC-----C------
386 AGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAA
* *
20881618 -G-A-T-C-T-TAC----ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCAT
451 TGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * **
20881673 GCGGGCGCTCAGCCGGCCAGTGGGGCAAGATGCACAAGCCGGGGATCGGTCTGGTCCCTGTCTGC
516 GCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGC
* * * * * *
20881738 GTGTTGTCGATCCTGATGCCGTAACCCTCGATCCGGTCCAATCTTAGACTGGGATTGAACTCCGT
581 GTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGT
* ** * * **
20881803 ATGCCTAAACTGACCGACGAAACGAGTGGGCACGCGGGTGGGTGGGCACTACGCTGGCCAGAGAG
646 ATGCCTAAGCCAACCGACGAAACGA----G-A--CGGGCGGGCGGGCACTACGCCAGCCAGAGAG
* * * * *
20881868 ATAGGATACGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTA
704 ACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTC
* *
20881933 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGAAGT
769 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGT
* * *
20881998 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTATGG-TTCGA
834 TTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGA
* ** **
20882058 GATTTTTT-AAAGTTTTTTCAAATATAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
1 -ATTTTTTAAAATTTTTTTGGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * *
20882122 TTTGTTGGCATGCACAAAAAAATTCACCTGAAAACTCGAAGTGTACAAGATTTTGTGACCAATTG
64 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
20882187 AAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTAGCAGCAAACCTGTGAAATCTCAAATG
129 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* ** *
20882252 CTCTTTAAAGGGGTGTGAGTTCTCGTTGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGT
194 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* **
20882317 ACCAGCACCCATCGCACATCATGTGCGTACACCCACCCGGCCCCCTCGATCGTC--AA-AAAT-C
259 ACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCTCGATCGTCGGAACCCATGC
* * * *
20882378 GAAT--G-CCA---C-CGGTC-ATGTTCTCCGGCGATGGTGCCCCGGAGAAGAAAAATACGGCAC
323 G-ATCGGTCAAGTTCTCCGACGATG--CTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCAC
* * * * * *
20882435 CAGCATATGCTCGAGCCCAGCATGTGCGGCTGCAACCCTCGGTCTAGTCCAATCTTAGACTGGGA
385 CAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGA
* * * * * * *
20882500 ATGAACTTCTTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCCATGAAACGAGTG
450 ATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
20882565 TGCGGGCGCTCAGCCAGCCAGAAGGGCGGGATGCGCAAGTCGGGGATCGGTCGGG-CCCTCCTCT
515 TGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCC-CCTCT
* * * * * ** * * ** * *
20882629 ACGTGCTGCCAATCCTACTG-TCGTAACCCTTAGTCTGGACTGATCTTAGACTAGGAATGAACTT
579 GCGTGCTGTCGATCCTGCTGCT-GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTC
** *
20882693 CGTATGCCTAAGCCAACCGACGAAACAAGCAGGTGGGCGGGCGGGCACTACGTCAGCCAGAGAGA
643 CGTATGCCTAAGCCAACCGACGAAAC--G-AGACGGGCGGGCGGGCACTACGCCAGCCAGAGAGA
* * * * **
20882758 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGTTGGGTTTGGGTACATCTTCATATTTCTAT
705 CAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCC
*
20882823 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
770 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
* * *
20882888 TCATGGCAAGACGACTCGTTTTCTATCTTTCATGATTTTCGAAACTTTTTACGGTTCAGG-
835 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT-TGGA
* * * * *
20882948 ATTTTCTAAAATTTTTTCGAAAAGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTT
1 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * *
20883013 TGTTGGCATGCAAAAAAAAATTCAGCTAAAAATTCAAAGTGTACAAGATTTTGTGACCATTTGAA
66 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
20883078 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCT
131 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
20883143 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
196 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * ** *
20883208 CAGCACCCATCGCACATCATGGGTGCACACCCCCCGACCCCC-CGATCACCAGAACCCTAATGCT
261 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCC--ATGC-
* * *
20883272 G-TCGGT-AAGGTTCTCCGACGATGCACCGGCAATGGTGCCCCGGTGAAGAAAAATACGGCACCA
323 GATCGGTCAA-GTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCA
* * * * * ** * * *
20883335 GCACATGCCCGAACCCAGCATTTGCTACCGTAAATCTCGGTCTGGTCTGATCTTAGACTGGCAAT
387 GCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAAT
* *
20883400 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTG
452 GAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * ** *
20883465 CGGGTGCTCATCCGGCCAGAGGGGCGGGTTGCACAAGCTAGGGATCGGTCGGGTCCCCCTTTGCG
517 CGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCG
* * * ** * * *
20883530 TGCTGTCGATCCTACTCCTACAACCCTCGGTCCGGTCTGATCTTAAACTAGGAATGAACTCTGTA
582 TGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTA
* * * * *
20883595 TGCCTAAGCCAACTGATGAAACGAG-CGGGTGGGCGGCGGGCACTACGCCAGCTAGAGAGACGGG
647 TGCCTAAGCCAACCGACGAAACGAGAC-GG-GCG-GGCGGGCACTACGCCAGCCAGAGAGACAGG
20883659 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGC
709 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGC
* * *
20883724 CAATGCCATTTTTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACGTGAGGTTTCAT
774 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCAT
*
20883789 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGG
839 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGA
** * *
20883845 ATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTT
1 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
*
20883910 TGTTGGCATGCATAAAAAAATTCAGC-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
66 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
20883974 AAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCT
131 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
20884039 CTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
196 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * *
20884104 CAGCACCCATCACACATCATGTGCCCACA-CCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCT
261 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAA-CCC-ATGC-
* * ** * * * *
20884168 G-CCGGTCAGGTTCTCCGGTGATGCTCTGGCGATGGTGCCCTGGCGAAGAAAAATGCAGCACCAG
323 GATCGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAG
* * * *
20884232 CACATGCTCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATG
388 CACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATG
* * *
20884297 AACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGC
453 AACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * ** * *
20884362 GAGTGCTCATCCGGCCAG-GGGATGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGCGT
518 GGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGT
* ** *
20884426 GCTGTCGATCCTGCTCGC-GTAACCCTCGGTCCGGTCTGATCTTAAACTGGGAATGAACTCCGTA
583 GCTGTCGATCCTGCT-GCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTA
* *
20884490 TGCCTAAGCCAACCGATGAAACGAGCGGGTGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGA
647 TGCCTAAGCCAACCGACGAAACGA-------GACGGGCGGGCGGGCACTACGCCAGCCAGAGAGA
* *
20884555 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTCC
705 CAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCC
*
20884620 ATGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
770 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
* * * * * *
20884685 TCACGGCAAGATGACTCGTTTTCTATTTTTCATGA-TTTTCAAAGCATTTTACGGTTCGGG
835 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-CTTTTTACGGTTTGGA
* * * *
20884745 ATTTTGTAAAAATTTTTTGGAGGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
1 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
*
20884810 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
66 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
20884875 AAAAGTGTCCCCATTACAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
131 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
*
20884940 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATA-GGGGCCAATATAAGGGCCAAGTAC
196 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* *
20885004 CAGCACCCATCGCTA-ATCATGTGCGCACACCCTCACCGGCCCCCACGATTGGT-GGAA-CC-T-
261 CAGCACCCATCGC-ACATCATGTGCGCACACCC-C-CCGGCCCCCTCGA-TCGTCGGAACCCATG
* * *
20885064 CGATCGGTCAAGTTCTTCGACGATGCTCCAGCGATGGTGCCCCGGTGAAGAAAAATGA-GGCACC
322 CGATCGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAAT-ACGGCACC
* *
20885128 -GACACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGATCTGGTCCGATCTTAGACTGGAA
386 AG-CACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGA
* * *
20885192 ATGAACTCCGTACACTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTG
450 ATGAACTCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * *
20885257 TGGGGGTGCTCAGCCGACCAGAGGGGCGAGATGCGCAAGACGGGGATCGATTGGGTCACCCTCTA
515 TGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTG
* * * * *
20885322 CGTGCTGCCGATCTTGCTGCTGCAACCCTTGGTCCGATCCAATCTTAGACTGGGAATAAACTCCG
580 CGTGCTGTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCG
* **
20885387 TATGCCTAAGTCAACCGACGAAACGA-ACGGGCGGGCGGGCACTACGCTGGCCAGAGAGACAGGA
645 TATGCCTAAGCCAACCGACGAAACGAGACGGGCGGGCGGGCACTACGCCAGCCAGAGAGACAGGA
*** *
20885451 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGTTTCC
710 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCC
*
20885516 AATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
775 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATG
20885580 GCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTACGGTTTGGA
840 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGA
* * *
20885634 ATTTTTTTAAAATTTTTTTGGAAGGAGTTTTAGCCCCAAACTTTGTAGACATGATCCTTGTATTT
1 A-TTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
20885699 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
65 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
** * * * *
20885764 AAAAAGTGTTTCCATTTCAGACACTTTAACGGCAACTGGCAGAAAAGCTGTAAAATCTCAAATGC
130 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
20885829 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTA
195 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
20885894 CCAGCTCCCATCGCACATAATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGC
260 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAA-CCC-ATGC
* * * * ** ** * *
20885959 CACCGATCAGGTTCTCCGACGATGCTCCAACGATGGTGCCCCGATGAAGAAATATATTGG-ACCA
323 GATCGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATA-CGGCACCA
* *
20886023 GCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGATC-GATCTGATCTTAGACTGGGAA
387 GCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTC-GATCTGGTCCGATCTTAGACTGGGAA
20886087 TGAACTCCGTAT
451 TGAACTCCGTAT
20886099 GCCTAAGTCA
Statistics
Matches: 4307, Mismatches: 484, Indels: 236
0.86 0.10 0.05
Matches are distributed among these distances:
865 2 0.00
866 3 0.00
867 69 0.02
870 2 0.00
871 1 0.00
872 8 0.00
873 3 0.00
874 2 0.00
875 78 0.02
876 347 0.08
877 333 0.08
878 269 0.06
879 4 0.00
880 2 0.00
881 6 0.00
882 2 0.00
883 1 0.00
884 3 0.00
885 1 0.00
886 1 0.00
887 7 0.00
888 13 0.00
889 484 0.11
890 323 0.07
891 156 0.04
892 7 0.00
893 162 0.04
894 119 0.03
895 142 0.03
896 393 0.09
897 288 0.07
898 452 0.10
899 126 0.03
900 331 0.08
901 144 0.03
902 4 0.00
903 16 0.00
904 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGGAACCCATGCGAT
CGGTCAAGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCAC
ATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAAC
TCCGTATACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
CGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT
GTCGATCCTGCTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCC
TAAGCCAACCGACGAAACGAGACGGGCGGGCGGGCACTACGCCAGCCAGAGAGACAGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGA
Found at i:20886277 original size:26 final size:26
Alignment explanation
Indices: 20886241--20886293 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20886231 TCGGTCTGAT
20886241 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20886267 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20886293 C
1 C
20886294 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.