Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 121 of 195
Found at i:20886451 original size:184 final size:188
Alignment explanation
Indices: 20886074--20886451 Score: 464
Period size: 192 Copynumber: 2.0 Consensus size: 188
20886064 TCGATCTGAT
* * * *
20886074 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAATGAGCGTGCGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTACGAG-ACTCAGC
* * * * * * *
20886139 CGGCCAGAGGGGCAGGATACGCAAGTCGGGGATCGGTCGGGTCCCCCTTTACGTATTGACCGAGG
65 CGGCCAAAGGGACAGGATACGCAAGCCGGGGATCGGTCGAGTCACCCTCTACGTACTGACCGAGG
* *
20886204 CCAGCATGTGCTATCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
130 CCAGCA--TGC--TCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATAAACTCCGTATG
*
20886267 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGA-AGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTACGAGA-CTCAGC
** * *
20886331 CGGCCAAAGGGATGGGATACGCAAGCCGGGGATCGGTCGAGTCACCCTCTACGTGCT-ACCGA-T
65 CGGCCAAAGGGACAGGATACGCAAGCCGGGGATCGGTCGAGTCACCCTCTACGTACTGACCGAGG
*
20886394 CCTA-C-TGC-CACAACCCTCGG-TCTGGTCTGATCTTAGACTGGGAATAAACTTCGTATG
130 CC-AGCATGCTCACAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATAAACTCCGTATG
20886451 C
1 C
20886452 CTAAGCCAGC
Statistics
Matches: 163, Mismatches: 19, Indels: 15
0.83 0.10 0.08
Matches are distributed among these distances:
183 2 0.01
184 44 0.27
187 3 0.02
190 3 0.02
191 7 0.04
192 52 0.32
193 52 0.32
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (188 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAGCGTACGAGACTCAGCC
GGCCAAAGGGACAGGATACGCAAGCCGGGGATCGGTCGAGTCACCCTCTACGTACTGACCGAGGC
CAGCATGCTCACAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATAAACTCCGTATG
Found at i:20887182 original size:26 final size:26
Alignment explanation
Indices: 20887144--20887196 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20887134 CTGATCCAAT
*
20887144 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20887170 CTTAGACTAGGAATGAATTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20887196 C
1 C
20887197 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20888099 original size:25 final size:26
Alignment explanation
Indices: 20888047--20888099 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
20888037 GGTTTGATCT
20888047 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
20888073 TAGACTGGGAATGAA-TTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
20888098 TA
1 TA
20888100 CGTCAACCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 11 0.42
26 15 0.58
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:20888563 original size:904 final size:902
Alignment explanation
Indices: 20886198--20890317 Score: 5264
Period size: 904 Copynumber: 4.6 Consensus size: 902
20886188 TACGTATTGA
* ** *
20886198 CCGAGGCCAGCATGTGCTATCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCG
1 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* **
20886263 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTAC-GAAGCT
66 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
* ** * * * * * *
20886327 CAGCCGGCCAAAGGGATGGGATACGCAAGCCGGGGATCGGTCGAGTCACCCTCTACGTGCTACCG
131 CAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
* * * *
20886392 ATCCTACTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATAAACTTCGTATGCCTAAG
196 ATCCTACTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * **
20886457 CCAGCCGACGAAATGAACGGGCGGGCGAGCGGGTGGGCACTATGTCGGCCAGAGAGACGGGATGC
261 CCAACCGATGAAACGAGCGGGCGGGCGA--GGGCGGGCACTACCTCGGCCAGAGAGACGGGATGC
*
20886522 CCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
324 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
20886587 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
389 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
20886652 AGACGACCCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGATTC-AGGATTTTTTAAAAT
454 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAAT
* ** * *
20886716 TTTTTCAGAAGGAGTTTTGGCCTCAAACTTGGTAGATTTGATCCTTGTATTTTTGTTAGCATGCG
518 TTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
20886781 CAAAAAAATTCAACTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCC
582 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCC
* * * * *
20886846 CATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGGAAAATCTCAAATTCTTTTTAAGAGGG
646 CATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
20886911 TGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
711 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * **
20886976 GCACGTCATGTGTGCACACCCCCCAG-CCCCCCCGATCGCCGAAATGCC-AATGCCGCCGGTCAG
776 GCACATCATGTGCGCACACCCCCCAGACCCCCCCGATCGTCGGAACCCCTAATGCCGCCGGTCAG
* * * *
20887039 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAAAAAAATACGGTACCAGCATATGC
841 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * * **
20887101 CTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCG
1 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * *
20887166 TATGCTTAGACTAGGAATGAATTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
66 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
* * * *
20887231 CAGCCGCCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTG
131 CAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
* * * ** *
20887296 ATCCTGCTACCGCAACCCTTGGTCCGGT-TGAATCTTAGGTTGGGTATGAACTCCGTATGCCTAA
196 ATCCTACTGCCACAACCCTTGGTCCGGTCTG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAA
*
20887360 GCCAACCGATGAAACGAGCGGGCGGGC--GGGCGGGCACTACGC-CAGCCAGAGAGACGGGATGC
260 GCCAACCGATGAAACGAGCGGGCGGGCGAGGGCGGGCACTAC-CTCGGCCAGAGAGACGGGATGC
* * * *
20887422 GCAAGCTGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCATTCCAAT
324 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* * *
20887487 GCCATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCACGTGAAGTTTGATGGCG
389 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
20887552 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTGTAAAATT
454 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * *
20887617 TTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGAGGTGATCCTTGTATTTTTTTTGGCATGCAC
519 TTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
20887682 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCA
583 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
20887747 TTTCAGACACTTTAATGGCTAATAGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
648 TTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
20887812 TGAGTTCTTGAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGC
713 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
20887877 ACATCATGTGCGTACACCCCCC-GCCGGCCCCCCGATCGTCGTAA-CCCTAATGCCGCCAGTTAG
778 ACATCATGTGCGCACACCCCCCAGAC--CCCCCCGATCGTCGGAACCCCTAATGCCGCCGGTCAG
* *
20887940 GTTCTCCGGTGATGCTCCGGA-GATGGTGCCCCGACGATGAAAAATGCGGCACCAGCACATGC
841 GTTCTCCGGCGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * *
20888002 CCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTTTGATCTTAGACTGGGAATGAACTCCG
1 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * * *
20888067 TATGCCTAGACTGGGAATGAA-TTCGTATGCCTACGTCAACCCACGAAACGAGCATGCGGGTGCT
66 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
** * *
20888131 CAATCGCCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCG
131 CAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
* * * *
20888196 ATCCTGCTGCCACAACCCTTGGTCCAGTCTGATCTTAGACTAGGAATGGACTCCGTATGCCTAAG
196 ATCCTACTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
20888261 CCAACCGATGAAACGAGCGGGCGGGCGAGCGAGCGGGCACTACCTCGGCCAGAGAGACGGGATGC
261 CCAACCGATGAAACGAGCGGGCGGGCGAG-G-GCGGGCACTACCTCGGCCAGAGAGACGGGATGC
* * *** *
20888326 GCAAGCCGTGAATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGGCAAT
324 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
20888391 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
389 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
20888456 AGACGACTCGTTTTCTACTTTTCATGATTTTTGAAACTTTTTATGGTTCGAGATTTTTTAAAATT
454 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * *
20888521 TTTTCGTAAGAAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC
519 TTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
20888586 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCA
583 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
20888651 TTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
648 TTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
20888716 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAACACCCATCGC
713 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
20888781 ACATCATGT-CG--CA-----C--ACCCCTCCGATCGTCGGAACCCC-AATGTCGTCGGTCAGGT
778 ACATCATGTGCGCACACCCCCCAGACCCCCCCGATCGTCGGAACCCCTAATGCCGCCGGTCAGGT
* * * * *
20888835 CCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACTATCACATGC
843 TCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * **
20888895 TCGAGCCTAGCATGTGCTGCCGCAACCCTCAGTCTAGTCTGATCTTAGACTGGGAATGAACTCCG
1 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * *
20888960 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTTCGGGCACT
66 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
* ** * * * * **
20889025 CAACCGGCCAGAGGGAAGGGATGCGTAAGTCGGGGATTGGCCGGGTCCCCCTCTGCATGCTGTTG
131 CAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
* * * *
20889090 ATCCTACTACCGCAA-CCTTCGGTCTGGTCCT-ATCTTAGACTGGGAATGAACTCCGTAAGCCTA
196 ATCCTACTGCCACAACCCTT-GGTCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
20889153 AGCCAACCGACGAAAC-A-------AGC-A-GGCAGGCACTACGC-CGGCAAGAGACACGGGATG
259 AGCCAACCGATGAAACGAGCGGGCGGGCGAGGGCGGGCACTAC-CTCGGCCAGAGAGACGGGATG
* *
20889207 CGCAAACCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
323 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
* * *
20889272 TGCCATTTTTATGACTTTTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGC
388 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * * * * *
20889337 AAGATGACTCGTTTTCTATTTTTTACGATTTTTAAAACTTTTTGCAGTTTGAGATTTTTTAAAAT
453 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT
* * *
20889402 TTTTTCAGAATGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTCTATTTTTGTTGGCATGCA
518 TTTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
20889467 CAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCC
582 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
20889532 ATTTCATACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTTTTTAAAGGGGT
647 ATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * ** * *
20889597 GTGAGTTCTTGAGCTTTGATGATTGATA-GGGGCCAATATAAGGGCCAAGTACCAGTACCCATCA
712 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * * *
20889661 CACATCATATGCGCACACCCCCCTGACCCCCTCGATCGTCGGAACCCCT-TTGCTGCCGATTAGG
777 CACATCATGTGCGCACACCCCCCAGACCCCCCCGATCGTCGGAACCCCTAATGCCGCCGGTCAGG
* *
20889725 -T-T-------T--TCCGGCGATGGTGCCCCTACGAAG---AAT---------G--C-T--
842 TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * ** *
20889758 -TGAGCCCAGTATGTGCTGTCGCAACCCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCCG
1 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * *
20889822 TATGCTTAGACTGGAAATGAACTCCGTATGGCTAAGTCAACCCATGAAACAAGCGTGCAGCCGCT
66 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
* * * * *
20889887 CAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGAGGATCAG-C---T----GT-TGTGTGATGCCG
131 CAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
* * ** * *
20889943 ATCCTACTGCTACAACCCTCGGTCCGGTCCAACCTTAGACTGGGAATGAACTCCGCATGCCTAAG
196 ATCCTACTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * * *
20890008 CCAACCGATGAAAAGATCGGGTGGACGGGTGGGCGGGCACTACATCGGCCAAAGAGACGGGTTGC
261 CCAACCGATGAAACGAGCGGGCGG--GCGAGGGCGGGCACTACCTCGGCCAGAGAGACGGGATGC
* * * *
20890073 CCAAGCCATGGATCGATA-GG-GGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCGTGCCAAT
324 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
20890136 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
389 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** * * *
20890201 AGAAGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTAACAGTTCGAGATTTTTAAAAATT
454 AGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-T
* * *
20890266 TTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTT
518 TTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
20890318 GTGGCCATTT
Statistics
Matches: 2824, Mismatches: 343, Indels: 140
0.85 0.10 0.04
Matches are distributed among these distances:
852 1 0.00
853 69 0.02
854 5 0.00
858 1 0.00
861 1 0.00
862 144 0.05
863 199 0.07
864 8 0.00
865 42 0.01
866 1 0.00
877 3 0.00
880 22 0.01
881 41 0.01
882 408 0.14
883 3 0.00
884 2 0.00
885 1 0.00
886 2 0.00
889 2 0.00
891 30 0.01
892 2 0.00
893 160 0.06
894 154 0.05
895 3 0.00
896 1 0.00
898 1 0.00
899 155 0.05
900 492 0.17
901 160 0.06
902 3 0.00
903 115 0.04
904 593 0.21
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCG
TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
CAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCG
ATCCTACTGCCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGATGAAACGAGCGGGCGGGCGAGGGCGGGCACTACCTCGGCCAGAGAGACGGGATGCGC
AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT
TTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCAGACCCCCCCGATCGTCGGAACCCCTAATGCCGCCGGTCAGGTTCT
CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
Found at i:20888974 original size:26 final size:26
Alignment explanation
Indices: 20888938--20888990 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20888928 CTAGTCTGAT
20888938 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20888964 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20888990 C
1 C
20888991 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20889415 original size:26 final size:26
Alignment explanation
Indices: 20889365--20889419 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 26
20889355 TTTTTTACGA
**
20889365 TTTTTAAAACTTTTTGCAGTTTGAGAT
1 TTTTTAAAACTTTTTGCAGAATGAG-T
*
20889392 TTTTTAAAA-TTTTTTCAGAATGAGT
1 TTTTTAAAACTTTTTGCAGAATGAGT
20889417 TTT
1 TTT
20889420 GGCCCCAAAC
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.16
26 12 0.48
27 9 0.36
ACGTcount: A:0.27, C:0.05, G:0.13, T:0.55
Consensus pattern (26 bp):
TTTTTAAAACTTTTTGCAGAATGAGT
Found at i:20889829 original size:26 final size:26
Alignment explanation
Indices: 20889800--20889851 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
20889790 CCGGTCCAAT
* *
20889800 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20889826 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
20889852 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:20891693 original size:26 final size:26
Alignment explanation
Indices: 20891657--20891706 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20891647 GGTCCGATCC
20891657 TAGACTGGGAATGAACTCCATATGGT
1 TAGACTGGGAATGAACTCCATATGGT
*
20891683 TAGACTGGGAATGAACTCCGTATG
1 TAGACTGGGAATGAACTCCATATG
20891707 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGGT
Found at i:20893976 original size:26 final size:26
Alignment explanation
Indices: 20893940--20894018 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
20893930 CTAGTCCAAT
*
20893940 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20893966 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
* *
20893992 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20894018 C
1 C
20894019 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20894902 original size:26 final size:26
Alignment explanation
Indices: 20894866--20894918 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20894856 CTGGTCCGAT
*
20894866 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20894892 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20894918 C
1 C
20894919 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20895809 original size:26 final size:26
Alignment explanation
Indices: 20895770--20895822 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20895760 GCGGTCCAAT
20895770 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
* *
20895796 CTTAGACTGTGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
20895822 C
1 C
20895823 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:20897494 original size:900 final size:901
Alignment explanation
Indices: 20893210--20901127 Score: 9935
Period size: 904 Copynumber: 8.8 Consensus size: 901
20893200 GTGCTATCGT
* * *
20893210 AACCCTCGATATGGTACGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCTGGT-CTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* ** *
20893275 CGAGCGGGCGGGCGGGCAGGCGGGCACTACGTCGGTTAGAGAGACGGGATGCGCAAGCCGTGCAT
65 CGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
20893340 CCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
*
20893405 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
20893470 TTTATTTTTCATGATTTTTAAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAG
260 TCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAG
* * * *
20893535 TTTTGGCTCGAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA-TCGGC
325 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * * *
20893599 TTAAAACTCAAAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCA-AAACTTT
390 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
20893663 AATGGCTACTAGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGG
455 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
20893728 TTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGCGC
520 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * * *
20893793 ACACCCCCTCAGCCCCCCGATCGGCGGAACCCTAGTGCCGCCGGTCAAGTTCTCCGACTATGATC
585 ACACCCCC-CGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * **
20893858 CGACGATGGTGCCCTGGCGAAGAAAAA-G-GTG-A-CA-C-CA-GCCCGAGCCCAGCATGTGCTG
649 CGGCGATGGTGCCCCGATGAAGAAAAATGCG-GCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
20893916 CGGCAACCTTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATG
713 CCGCAACC--C--TC--G----------GTCT-GG--T---C--TG-AT-CTTAGACTGGGAATG
* *
20893981 AACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGC
752 AACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * ** * * * *
20894046 AGGCGCTCAGCTGGCCAGAGGGGCGGGATACGCAAGTCGGGGATCGGCCGTGTCCCCTTCTGTGT
817 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAACCGGGGATCGACCGGGTCCCCCTCTGCGT
* * **
20894111 GCTACCAATCCTATTGCCA-C
882 GTTACCGATCCTGCTG-CAGC
** * *
20894131 AACCCTCGACCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACGAAA
1 AACCCTCGGTCTGGTCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
20894196 CGA----ACGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGAGATACGCAAGCCGTGGAT
65 CGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
20894257 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTAATATTTCTACGTGCCAATGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
20894322 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
20894387 TCTTTTTTTCACGATTTTGGAAACTTTTTGCGGTTCCA-GATTTTTTAAAATTTTTTCGGAAA-G
260 TCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTT-CAGGATTTTTTAAAATTTTTTC-GAAAGG
* ***
20894450 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCATATGCACAAAAAAATTCA
323 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * * *
20894515 GCTAAAAATTCAAAGTGTACAAGATTTGGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
388 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
**
20894580 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTAA
453 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
20894645 GGTATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTCA-CACCCATCGCACATCATGTG
518 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC-CAGCACCCATCGCACATCATGTG
* *
20894709 CGCACACCCCACCCGGCCCCCCCGATCGCCAGAACCCGAATGCCGCCGGAT-AGGTTCTCCGACG
582 CGCACA-CCC-CCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGG-TCAGGTTCTCCGACG
* * * ** *
20894773 ATGCT-CGGCGATTGTGCCTCGCTGAAGAAAAATGCGGCACCAGTGCATGCCCGAGCCCAGAATG
643 ATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
20894837 TGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
708 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG
*
20894902 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGG
773 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * * *
20894967 GGCGGGATGCGCAAGCCGGGGATC-AGCCGTGTCCCCCTCTACGTGTTATCGATCCTGCTACTGT
838 GGCGGGATGCGCAAACCGGGGATCGA-CCGGGTCCCCCTCTGCGTGTTACCGATCCTGCTGCAGC
* *
20895031 AACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCGGTCTGGTCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
20895096 CGAACGGGCGGGCGGGCGGACGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
65 CGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
20895161 CGATCGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
* *
20895226 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCATTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * ** * * **
20895291 TCTTTTTTTCACGATTTGGGAAACTTTTTACGGTTCCGGATTTTTTAAAATTTTTTCGAAAGGTT
260 TCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAG
*
20895356 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGC
325 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
20895421 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATT
390 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
20895486 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
455 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * *
20895551 TTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCCGCATCCATCGCACATCATGTGCGT
520 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * ** * **
20895616 ACACCCCCCCGGCCCCACTGATCGTCGAAACCAGAACGCCGCCGGTCAGGTTCTCTAACGATGCT
585 ACA-CCCCCCGGCCCC-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* ** ** * *
20895681 CCGACGATGGTGCCATGGCGAAGAAAAATGCGGCACAAGCACATGCCTGAGCCCAGCATGTGCTG
648 CCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
** *
20895746 CCGCAACCCTCGGTGC-GGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT-GTGAA
713 CCGCAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG-GAA
** * * * *
20895809 TGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACTGGCCAGAGGGGT
776 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
** * * * * * * **
20895874 GGGATATGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCATGTTGCCGATCCTGCTACTTC
841 GGGATGCGCAAACCGGGGATCGACCGGGTCCCCCTCTGCGTGTTACCGATCCTGCTGCAGC
* * * * *
20895935 AACCCTTGGTCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCTGGT-CTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* **
20896000 TGAGCGGGCGGGCGGGCGGGCAAGCACTACGTCGGCCAGAG-GACGGGATGCGCAAGCCGTGGAT
65 CGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
20896064 TGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATACCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
* * *
20896129 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTCCATGGCAAGATGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * * *
20896194 TCTTTTTTTCACA-ATTTTTAAAACTTTTTGCAGTTCAAGATTTTTTAAAATTTTTTTGGAAA-A
260 TCTATTTTTCA-AGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAA-TTTTTTCGAAAGG
* *
20896257 AGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
323 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
20896322 GCTAAAAACTCGAAGTGTACAAGATTATGTGACCATTT-AGAAAAAGTGTCCCCATTTCAGACAC
388 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCCATTTCAGACAC
20896386 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
452 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
20896451 AGGTTTGATGAGGGATAGCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
517 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
20896516 CGCACATCCCCCGGCCCCCCGATCTCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGC
582 CGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGC
* *
20896581 TCCGACGATGGTGCCCCGATGAAGAAAAATGGGGCACCAGCACATGCTCC-AGCCCAGCATGTGC
647 TCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGC-CCGAGCCCAGCATGTGC
* * * *
20896645 TGTCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATAAACTCCGAATGCTTAGACTAGGAA
711 TGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAA
* * * * * * * **
20896710 TGAACTCTGTATGCCTAAGTCAACACATGAAACGAGCGTACGGGCGATCAACCGGCCAG-TGAAC
776 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* *
20896774 GGGATGCACAAACTGGGGATCGACCGGGTCCCCCTCTGCGTGTTACCGATCCTGCTGCAGC
841 GGGATGCGCAAACCGGGGATCGACCGGGTCCCCCTCTGCGTGTTACCGATCCTGCTGCAGC
* * * ** *
20896835 AACCCTCGATCTGATCCTATCTTAGACTAGGAATGAACTCCGTATGTGTAAGCCAACCGACAAAA
1 AACCCTCGGTCTGGT-CTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * *
20896900 CGAGCAGGCGGGCAGGTGGTCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
65 CGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
**
20896965 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
* * *
20897030 CTTGTAAATTCATACGATGGTCTCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * *
20897095 TCTATTTTTCAATATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAAGTTTTTCGGAAGGAG
260 TCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAG
* *
20897160 TTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTCAGC
325 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * *
20897224 AAAAAACTCGAACTGTACAAGATTTTGTGACCATTTAAAAAAAGTATCCCCATTTCAGACACTTT
390 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
20897289 AACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTTG-GTTCTCGAG
455 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTCGAG
* * *
20897353 GTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACTAGCACCCATCGCACATCATGTACG
519 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * **
20897418 CACACCCCCCGGCCCTCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATAATGCTC
584 CACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
* * * *
20897483 CGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACACGCTCGAGCCCAGCATGTGCTGC
649 CGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
** * * *
20897548 CGCAACCCTCGGT-TCAATCCGATCTTAGACTGGGAATGAACTCTGTAAGCTTAGACT-GTGAAT
714 CGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAG-GAAT
*
20897611 GAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
777 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * * * * *
20897676 GGATGCGTAAGCCAGGGATCGACCGAGTCCCCCTCTGCATGCTATCGATCTTGCTGCCGC
842 GGATGCGCAAACCGGGGATCGACCGGGTCCCCCTCTGCGTGTTACCGATCCTGCTGCAGC
* * *
20897736 AACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCTGGT-CTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * *
20897801 CGAACGGGCGGGCGGGTGGGCGGGCACTACGCCGGCCAAGAGAGACAGGATGCGCAGGCCGTGGA
65 CGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCC-AGAGAGACGGGATGCGCAAGCCGTGGA
* *
20897866 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
129 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
* *
20897931 CCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
194 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
20897996 TTCTATTTTTCAAGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGTAAGGA
259 TTCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGA
* * * *
20898061 GGTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTTGCTTTGCAAAAAAAAAAATT
324 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC-ATGC--ACAAAAAAATT
*
20898125 CAGCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
386 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
20898190 CTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
451 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
20898255 GAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGT
516 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * ** *
20898320 GCGCACACCCCCCGGCCCCCCCGATCACCAGAACCCCAATGCCGTTGGTCAGGTTCTCCGGCGAT
581 GCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* ** * *
20898385 GCTACGAAGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCATATGCCCGAGCCCAGCATGTG
645 GCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
20898450 CTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGAA
710 CTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGA
** * * **
20898515 ATGAACTTTGTATGGCTAAGTCAACCAACGAAACGAGCGTGCGGTTGCTCAGCCGGCCAGAGGGG
775 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * * * * * *
20898580 TGGGAT--G-----C-----TCGGCTGGGTCCCTCTCTGCATGCTACCAATCCTGCTACCGC
840 CGGGATGCGCAAACCGGGGATCGACCGGGTCCCCCTCTGCGTGTTACCGATCCTGCTGCAGC
* * *
20898630 AACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAACCGATGAAA
1 AACCCTCGGTCTGGTCT-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* *
20898695 CGAGCGGCCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGAT
65 CGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
20898760 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCACTACCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG
* * *
20898825 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTATCATGGCAACACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * **
20898890 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAG
260 TCTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAG
* * * * * *
20898955 TTTTAGCCCCAAGCTTGGTAGATGTGATCCTTGTAGTTTTGTTGGTATGCACAAAAAAATTCAAC
325 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * *
20899020 TAAAAACTCGAAGTGTACAAGATTTTGTAACCATTCGAAAAAAGTGTCCACATTTCAGACACTTT
390 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
20899085 AATGGCTACTGGTAGCAAAACTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGG
455 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
20899150 TTTGATGAGGGATACGGGGGCCAATAT-AGGGCTAAGTACCAGCACCCATCGCTA-ATCATGTGC
520 TTTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC-ACATCATGTGC
* * * *
20899213 GCACACCCCCCGGCCCCCCTCGATCGCCCTGAACCCCCAATGCCACCGGTAAAGTTCTCCG-CGA
583 GCACACCCCCCGG-CCCCC-CGATCG-CCGGAA-CCCCAATGCCGCCGGTCAGGTTCTCCGACGA
* * * * * *
20899277 TGCTCCGGCAATGGTGCCCCGACGAAGAAAAAATACGGCA-CATACACAATGCCCGATGCCAAAC
644 TGCTCCGGCGATGGTGCCCCGATGAAG-AAAAATGCGGCACCA-GCAC-ATGCCCGA-GCCCAGC
** * * *
20899341 AT-TGCTGTTG-AACCCTCGGTCCGATCTGATCTTAGATTGGGAATGGAACTCCGTAATGC-TAG
705 ATGTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAT-GAACTCCGT-ATGCTTAG
* * * * * *
20899403 AC-GGGAATGAACTCCGTATGCTCTAAGTCAAAACGCATGACATGAGCGTGCGGTGC-ATCAGCC
768 ACTAGGAATGAACTCCGTATGC-CTAAGTC--AACCCACGAAACGAGCGTGCGG-GCGCTCAGCC
* * * * *
20899466 GGCCAGAGGGGCGGGAAGCGCAAGCCGGGGATCGCCCAAGTTCCCCCTCTGCGGCTGTT---GAT
829 GGCCAGAGGGGCGGGATGCGCAAACCGGGGATCGACC-GGGTCCCCCTCTGC-G-TGTTACCGAT
* *
20899528 CCTGTTGCCTG-
891 CCTGCTG-CAGC
* * * * * * * * *
20899539 TACCCTCGGTCTGGGTCCGAT-TTATAATACGGAATGAAATCCCGTATGCCCTAA-TCAATCGAT
1 AACCCTCGGTCT-GGT-CTATCTTAGACT-GGGAATGAACT-CCGTATG-CCTAAGCCAACCGAC
* * * * * * * *
20899602 G-AACGAGCATGCCGGGGCGGGCAGGCGAGCACTACCT-GGCTAGACAGAC-GGATGCTCAAGCC
61 GAAACGAGC-GGGC-GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
20899664 GT-GATCGATAGCGTGGTAGGTGGGTTTAGGCACATCTTTATAATTTCTACATGCCAATGCCATT
124 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTACGTGCCAATGCCATT
* *
20899728 TTTAT-GCTTGATAAATTCAAACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACT
188 TTTATGGCTTG-TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-
* * *
20899792 GACTCGTTTTCTATTTTTCACAGATTTTTAAAACTTTTTAGGGGTT-TGGCATTTTTTAAAATTT
251 GACTCGTTTTCTATTTTTCA-AGATTTTTGAAACTTTTT-GCGGTTCAGG-ATTTTTTAAAA--T
* * *
20899856 TTTTTCGAAAGGAGTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCA
311 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
20899921 C-AAAAAATTCAGCTAAAAA-T-TAAGTG--GAA-A-TTTGTTGACCATTTGAAAAAAGTGTCCC
376 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG-TGACCATTTGAAAAAAGTGTCCC
* *
20899979 CATTTCAGACACTTTAATGGCCCACT-GCACCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
440 CATTTCAGACACTTTAATGG-CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
20900043 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAACGGGCCAAGTACCAGCACCCC
504 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGGCCAAGTACCAGCACCCA
* * *
20900108 TCGCACATCATTTGTGCACACCCCCCGG-CCCCCGATCGCCGGAACCCCAATGCCGCCGGCCAGG
568 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * * *
20900172 TTCTCCGACGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAAATGCCTGA
633 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * *
20900237 GCCCAGTATGTGCTGCCACAACCCTCGGTCTGGTGC-GATCATAGACTGGGAATGAACTCCGTAT
698 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGT-CTGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
20900301 GCTGAGACTGGGAATGAACTCCGTATGCCTAAGTCCACCCACGAAACGAGCGTACGGGCGCTCAG
762 GCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
20900366 CCGGCCAGAGGGGTGGGATGCAC-AACTGGGGATCGATCGAGTCCCCCTCAGGGTGTTCCCGATC
827 CCGGCCAGAGGGGCGGGATGCGCAAACCGGGGATCGACCGGGTCCCCCTCTGCGTGTTACCGATC
20900430 CTGCTGCCA-C
892 CTGCTG-CAGC
* * * * *
20900440 AACCCTCGGTCAGTGT-GATCTTAGACTGGGAATGAACTCTGTATGCCTATGCCAACCGACAAAA
1 AACCCTCGGTCTG-GTCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * * * * *
20900504 TGAGTGGTCAGGCCGACGGGCGGGCACTACG-CTGGCCAGAGAGATGGGATGCGCAAGTCATGGA
65 CGAGCGGGCGGGCGGGCGGGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * *
20900568 TCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTTTGCATGCCAATGCCATTTTTATG
129 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATG
* * * *
20900633 GCTTGCAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTT
194 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
20900698 TTCTATTTTTCAA-AATTTTCAAAATTTTTG-GAGTTCGGGATTTTTTAAATTTTTTTCGAAAGG
259 TTCTATTTTTCAAGATTTTTGAAACTTTTTGCG-GTTCAGGATTTTTTAAAATTTTTTCGAAAGG
* ** * *
20900761 AGTTTTGGCCCCAAACTTTGTAGTTGTGATCCTTGTATTTTTGTTGCCATGCACAAAAAAAATCA
323 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
20900826 GCTTAAAACTCGAAGTGTACAAGA-TTTGTGA-CATTTGAAAAAATTGTCACCATTTCAGCACAC
388 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACAC
* * *
20900889 TTTAATGGCTACTGGCAGCAAACCTGCAAAAT-TCAAATGCTCTTTAA-GGGG-GTGACTTCTCA
452 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
20900951 AGGTTTGATGGAGGGATAGGGGGCCAATATAGGGGCCAAGTA-CAGCACCCATCACAACATCATG
517 AGGTTTGAT-GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC-ACATCATG
* * * * * *
20901015 TGCGCACA--CCCCGG-CCCCCGATCGTCGAAACCCCAATGTCGCCGGTCAGGTTCACTGGCGAT
580 TGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGAT
* * *
20901077 GCTCCGGC-ATGGTG-CCCGGTGAAG--AAATGTGGCATCAGCACATG-CCGAGCC
645 GCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
20901128 AACATGGTAG
Statistics
Matches: 6152, Mismatches: 702, Indels: 319
0.86 0.10 0.04
Matches are distributed among these distances:
888 6 0.00
889 17 0.00
891 207 0.03
892 24 0.00
893 394 0.06
894 236 0.04
895 92 0.01
896 56 0.01
897 103 0.02
898 79 0.01
899 113 0.02
900 815 0.13
901 621 0.10
902 307 0.05
903 496 0.08
904 838 0.14
905 289 0.05
906 252 0.04
907 9 0.00
908 20 0.00
909 176 0.03
910 170 0.03
911 48 0.01
912 51 0.01
913 16 0.00
914 17 0.00
915 59 0.01
917 277 0.05
918 61 0.01
919 128 0.02
920 30 0.00
921 108 0.02
922 5 0.00
923 2 0.00
924 1 0.00
925 2 0.00
926 27 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
AACCCTCGGTCTGGTCTATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCAAGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
GCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
GCGCAAACCGGGGATCGACCGGGTCCCCCTCTGCGTGTTACCGATCCTGCTGCAGC
Found at i:20898506 original size:26 final size:26
Alignment explanation
Indices: 20898477--20898528 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20898467 CTGGTCTGAT
* *
20898477 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGAAATGAACTCTGTATG
*
20898503 CTTAGACTAGAAATGAACTTTGTATG
1 CTTAGACTAGAAATGAACTCTGTATG
20898529 GCTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.13, G:0.23, T:0.33
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCTGTATG
Found at i:20900315 original size:26 final size:26
Alignment explanation
Indices: 20900279--20900328 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
20900269 GTGCGATCAT
20900279 AGACTGGGAATGAACTCCGTATGCTG
1 AGACTGGGAATGAACTCCGTATGCTG
20900305 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
20900329 CTAAGTCCAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTG
Found at i:20902484 original size:26 final size:26
Alignment explanation
Indices: 20902446--20902524 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
20902436 CTGGTTCGAT
20902446 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20902472 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20902498 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20902524 C
1 C
20902525 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20903418 original size:26 final size:27
Alignment explanation
Indices: 20903382--20903433 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 27
20903372 AGTCCCAATC
20903382 TTAGACTGGGAAAGAACT-CGTATGCT
1 TTAGACTGGGAAAGAACTCCGTATGCT
*
20903408 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAAAGAACTCCGTATGC
20903434 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.29, C:0.17, G:0.27, T:0.27
Consensus pattern (27 bp):
TTAGACTGGGAAAGAACTCCGTATGCT
Found at i:20904301 original size:26 final size:26
Alignment explanation
Indices: 20904250--20904302 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20904240 CTGGTCTGAT
* *
20904250 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20904276 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20904302 C
1 C
20904303 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20908688 original size:26 final size:26
Alignment explanation
Indices: 20908659--20908711 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20908649 CCGATCCGAT
* * *
20908659 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACACCATATG
20908685 CTTAGAATGGGAATGAACACCATATG
1 CTTAGAATGGGAATGAACACCATATG
20908711 C
1 C
20908712 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACACCATATG
Found at i:20910342 original size:26 final size:26
Alignment explanation
Indices: 20910313--20910365 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20910303 CGGGTCCAAT
*
20910313 CTTAGACTGGGAATCAACTCGGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
20910339 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
20910365 C
1 C
20910366 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:20911913 original size:784 final size:779
Alignment explanation
Indices: 20910401--20911942 Score: 2346
Period size: 784 Copynumber: 2.0 Consensus size: 779
20910391 ACAGGCGCTC
*
20910401 AGCCGACCAGAGGGGCGAGATGCACAAGCCAAGGATCAATCGGGTCCCCTTCTACGTGCTGCCGA
1 AGCCGACCAGAGGGGCGAGATGCACAAGCCAAGGATCAATCGGGTCCCCCTCTACGTGCTGCCGA
* *
20910466 TCCTACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTTTGCCTAAGC
66 TCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
20910531 CAACCGACGAAACGAGCGGGTGGGCGGGTACTACGCCGACCAGAGACGGGATGTGCAAGCCGTGG
131 CAACCGACGAAACGAGCGGGCGGGCGGGTACTACGCCGACCAGAGACGGGATGCGCAAGCCATGG
* *
20910596 ATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTCCATGCCAATGCCATTTTTAT
196 ATCGATAGGGTGGTAGGTAGGTTTAGGAACATCTTCATATTTCTCCATGCCAATACCATTTTTAT
*
20910661 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGT
261 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCACATGAAGTTTCATGGCAAGACGACTCGT
* **
20910726 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGAGTTTTTCAAATTTTTTCAGAAGG
326 TTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGAGAGTTTTTCAAATTTTTTCAGAAGG
20910791 AGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACATAAAAATTCA
391 AGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACATAAAAATTCA
* *
20910856 GCTAAAAACTCGAAGTATACATGATTTTGTGACATTTGAAAAAAGTGTCCCCATTTCAGACACTT
456 GCTAAAAACTCGAAGTATACAAGATTTTGTGACATTTGAAAAAAGTGTCCCCATTCCAGACACTT
* * *
20910921 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
521 TAATGGATACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCAAG
* * * *
20910986 GTTTGATGCGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCACACATCATGTGCG
586 GTTTGATGAGGGATAGAGGACCAATATAAGGGACAAGTACCAGCACCCATCACACATCATGTGCG
* **
20911051 CACACCCCCCCGACGCCCCCGATCGTCGGAACCCAAATGCCGCCGGTAAGGTTCTCCGGCGATGC
651 CACACCCCCCCGACCCCCCCGATCCCCGGAACCCAAATGCCGCCGGTAAGGTTCTCCGGCGATGC
* *
20911116 CCAGGCAATGGTGCCCCGATGAAGAAAAATATGGCACCAGCACGAATGGAGCTTGCGGGCACTT
716 CCAGACAATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACGAATGGAGCTTGCGGGCACTT
* * * **
20911180 AGCCG-CCAGAGGGGC-AGGATGCACAAGCCGATGATCGA-CTGGGTCCCCCTCTGTGTGCTGCC
1 AGCCGACCAGAGGGGCGA-GATGCACAAGCCAAGGATCAATC-GGGTCCCCCTCTACGTGCTGCC
* * * *
20911242 GATCCTGCTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
64 GATCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
20911307 GCCAACTGACGAAATGAGCGGGCGGGCGGGCGGGTACTATGCCGGCTAGAGAGACGGGATGCGCA
129 GCCAACCGACG-AA--A-CGAGCGGGCGGGCGGGTACTACGCCGAC--CAGAGACGGGATGCGCA
* * **
20911372 AGCCATGGATCGATAGGTTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGGATGCCAATACC
188 AGCCATGGATCGATAGGGTGGTAGGTAGGTTTAGGAACATCTTCATATTTCTCCATGCCAATACC
*
20911437 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGGCAAGA
253 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCACATGAAGTTTCATGGCAAGA
* * * *
20911502 TGACTTGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTTGAGA-TTTTTTAAACTTTT
318 CGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGAGAGTTTTTCAAA-TTTT
* * *
20911566 TTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA-
382 TTCAGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAT
*
20911630 AAAAAGTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCAT
447 AAAAA-TTCAGCTAAAAACTCGAAGTATACAAGATTTTGTG-ACATTTGAAAAAAGTGTCCCCAT
*
20911695 TCCAGACACTTTAATGGATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGAGT
510 TCCAGACACTTTAATGGATACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGAGT
* *
20911759 GAGTTCTCAAGGTTTGATGATGGATAGAGGACCAATATAA-GGACGAAGTACCAGCACCCATCGC
575 GAGTTCTCAAGGTTTGATGAGGGATAGAGGACCAATATAAGGGAC-AAGTACCAGCACCCATCAC
* * *
20911823 ACATCATGTGCGCACACCCCCCCTGGCCCCCCCGATCCCCGGAACCCCAATGCCGCCGGTCAGGT
639 ACATCATGTGCGCACACCCCCCC-GACCCCCCCGATCCCCGGAACCCAAATGCCGCCGGTAAGGT
* *
20911888 TCTCCGG-GATGCTCC-GACGATGGTGCCCCGGCGAAGAAAAATATGGCACCAGCAC
703 TCTCCGGCGATGC-CCAGACAATGGTGCCCCGACGAAGAAAAATATGGCACCAGCAC
20911943 ATGCCCGAGC
Statistics
Matches: 688, Mismatches: 61, Indels: 23
0.89 0.08 0.03
Matches are distributed among these distances:
777 2 0.00
778 116 0.17
779 7 0.01
781 1 0.00
782 24 0.03
783 16 0.02
784 401 0.58
785 121 0.18
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (779 bp):
AGCCGACCAGAGGGGCGAGATGCACAAGCCAAGGATCAATCGGGTCCCCCTCTACGTGCTGCCGA
TCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCGACGAAACGAGCGGGCGGGCGGGTACTACGCCGACCAGAGACGGGATGCGCAAGCCATGG
ATCGATAGGGTGGTAGGTAGGTTTAGGAACATCTTCATATTTCTCCATGCCAATACCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCACATGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGAGAGTTTTTCAAATTTTTTCAGAAGG
AGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACATAAAAATTCA
GCTAAAAACTCGAAGTATACAAGATTTTGTGACATTTGAAAAAAGTGTCCCCATTCCAGACACTT
TAATGGATACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCAAG
GTTTGATGAGGGATAGAGGACCAATATAAGGGACAAGTACCAGCACCCATCACACATCATGTGCG
CACACCCCCCCGACCCCCCCGATCCCCGGAACCCAAATGCCGCCGGTAAGGTTCTCCGGCGATGC
CCAGACAATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACGAATGGAGCTTGCGGGCACTT
Found at i:20912895 original size:26 final size:26
Alignment explanation
Indices: 20912859--20912911 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20912849 CTGGTCTGAT
20912859 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20912885 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20912911 C
1 C
20912912 CTAAGTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20914696 original size:26 final size:26
Alignment explanation
Indices: 20914667--20914719 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20914657 CCAGTCCGAT
20914667 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
20914693 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
20914719 C
1 C
20914720 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:20915496 original size:899 final size:900
Alignment explanation
Indices: 20911164--20915592 Score: 5835
Period size: 906 Copynumber: 5.0 Consensus size: 900
20911154 AGCACGAATG
* * * * * ** *
20911164 GAGCTTGCGGGCACTTAGCC-GCCAGAGGGGCAGGATGCACAAGCCGATGATCGA-CTGGGTCCC
1 GAGCGTGCGGGCTCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GAGTCCC
** ** * * * *
20911227 CCTCTGTGTGCTGCCGATCCTGCTGTCGTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGA
65 CCTCTACGTGCTATCGATCCTACTGCCATAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGA
* * * *
20911292 ACTCCGTATGCCTAAGCCAACTGACGAAATGAGCG-GGCGGGCGGGC-G-GGTACTATGCCGGCT
130 ACTCCGTATGCCTAAGCCAACCGACGAAA--AGCGAGGCGGGCGGGCGGCGGCACTACGCCGGCC
* * * *
20911354 AGAGAGACGGGATGCGCAAGCCATGGATCGATAGGTTGGTAGGTAGGTTTAGGCACATCTTCATA
193 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATA
* * * *
20911419 TTTCTGGATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTGCACG
258 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAG
* * * ** ** *
20911484 TGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTTG
323 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTTCG
* * *
20911549 AGATTTTTTAAACTTTTTTCGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATT
388 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
* *
20911614 TTTGTTGGCATGCACAAAAAAGTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTG
453 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
20911679 AAAAAAGTGTCCCCATTCCAGACACTTTAATGGATACTGGCAGCAAACCTGTAAAATCTCAAATG
518 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * * * *
20911744 CTCTTTAA-GGGGAGTGAGTTCTCAAGGTTTGATGATGGAT-AGAGGACCAATAT-AAGGACGAA
583 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAG-GGGCCAATATAAAGG-CCAA
*
20911806 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCTGGCCCCCCCGATCCCCGGAACCCC
646 GTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCCCGATCGCCGGAACCCC
* * * * *
20911871 AATGCCGCCGGTCAGGTTCTCCGG-GATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATATGGC
709 AATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGTGGC
* *
20911935 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA-CC-C---CC-G---G-TC-----C---
774 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGG
* * *
20911982 --A-G---TCCG-AT-CTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAAC
839 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAAC
* *
20912036 GAGCGTGCGGGCGT-TCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGAT-GGGTCCC
1 GAGCGTGCGGGC-TCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGTCCC
* * * * * * *
20912099 CCTCTACGTGCTACCAATCCTACTACCACAACCCTCAGTCTGATCCAATCTTAGACTGAGAATGA
65 CCTCTACGTGCTATCGATCCTACTGCCATAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGA
* * * *
20912164 ACTCCGTATTCCTAAGCCAACCGAGGAAACAAGCG-GGCGGGCGGGC-G-GGCACTACGTCAGCC
130 ACTCCGTATGCCTAAGCCAACCGACG-AA-AAGCGAGGCGGGCGGGCGGCGGCACTACGCCGGCC
*
20912226 AGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATA
193 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATA
* **
20912291 TTTCT-AAGTGTGAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-A
258 TTTCTGCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAA
* * *
20912354 CTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTGGGTTC
322 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTTC
* * *
20912419 GAGATTTTTAAAAAATTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
387 GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTAT
* *
20912483 TTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGAACAAGATTTTGTGACCATTT
452 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
20912548 GAAAAATGTGTCCCAATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
517 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
20912613 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
582 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAAGGCCAAG
* *
20912678 TACCAGCACCCATCGCTA-ATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCTGAACCCCAA
647 TACCAGCACCCATCGC-ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAA
* * **
20912742 TGCCACCGGTAAAGTTCTCCGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATACGGCAC
711 TGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGTGGCAC
* * * * * *
20912807 CA-CACATGCCCGAGCCAAACATTTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGA
776 CAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGA
* *
20912871 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-ACCACGACAT
841 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACA-CACGAAAC
* * * ** *
20912931 GAGCGTGCGGG-TGCTCAGCCGGCCAGAGAGGCGGGAAGCGCAACCCGGGGATCGCCCAAGTCCC
1 GAGCGTGCGGGCT-CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGTCCC
* * ** * * *
20912995 CCTCTGCGTGCTGTCGATCCTGTTGCCGTAACCCTCGGTCTGGTCCGATCTTA-ACTAGGAATGA
65 CCTCTACGTGCTATCGATCCTACTGCCATAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGA
* * *
20913059 ACTCCGTATGCCTAATCCAACTGACGAAACGAGCG-GGCGGGCGGGCAGGCGAGCACTACGCTGG
130 ACTCCGTATGCCTAAGCCAACCGACGAAA--AGCGAGGCGGGCGGGC-GGCG-GCACTACGCCGG
* * *
20913123 CCAGACAGACGGGATGCGCAAGCCGTGGATCGATAGCGTGGTAGTTGGGTTTAGGCACATCTTCA
191 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCA
* * * *
20913188 TATTTCTACGTGCCAATGCCATTTTTATGGCTTGAAAATTCAAACAATGGTCCCTTAAGCCTTCA
256 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
20913253 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAGCTTTTTGGGGTT
321 AGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTT
* * * *
20913318 CCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGCCATGATCATTGTA
386 CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
*
20913383 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATT
451 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
20913448 TGAAAAAAGTGTCCCCATTTTAGACACTTTAATGCCTACTGGCAGCAAACCTGTAAAATCTCAAA
516 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
20913513 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAAGGCCAA
581 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAAGGCCAA
* * *
20913578 GTACCAGCACCCATCGCACATCATTTGTGCATACCCCCCGGCCCCCCCGATCGCCGGAACCCCAA
646 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAA
* *
20913643 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCAC
711 TGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGTGGCAC
* *
20913708 CAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTAAGACTGGGA
776 CAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGA
* * * ** * * *
20913773 ATGAACTCCGTATGCTTAGACTCGAAATGGACTCCGTATGTGTAAGTCAACCCACAAAAT
841 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAAC
* * * * * *
20913833 GAGCGTGCGGGCGCTTAGCCGGCTAGAGGGGCGGGATGCGCAAGCCTGGGATCG-GCTGGGTCCC
1 GAGCGTGCGGGCTCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GAGTCCC
* * * * * ** * ** * *
20913897 CCTCTATGTGATGTCGATCCTACTGTCGTAACCCTTGGTCCGGTTTGATCATAGACTGCGAATGA
65 CCTCTACGTGCTATCGATCCTACTGCCATAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGA
* * *
20913962 ACTCTGTATGCCTAAGCCAACCAACGAAACGAGCGAGTGGGCGGGCGGGCGGGCAGGCACTACGT
130 ACTCCGTATGCCTAAGCCAACCGACGAAA--AGCGA---GGCGGGCGGGC-GGC-GGCACTACGC
* * *
20914027 CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATACGGTGGTAGATGGGTTTGGGCACATCT
188 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCT
* ** *
20914092 TCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCT
253 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * * ** *
20914157 GCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCG
318 TCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGGG
* * * * * *
20914222 GTTTGGGAATTTTTAAAATTTTTTTGGAAGAATTTTTGGCCCCAAACTTGGTAGACATGATCCTT
383 GTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTT
* *
20914287 GTATTTTTGTTGGCATGC-CCAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAAC
448 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
20914351 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGATATTGGCAGCAAACCTATAAAATCTC
513 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
20914416 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGGA
578 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAAGG-
* *
20914480 CCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGTCCCCCCGATCGCCGGAACC
642 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACC
* * * * * *
20914545 CTAATGTCACCAGTCAGGTTCTCCGACGATGCTCTGGCAATGGTGCCCCGACGGAGAAAAATGTG
707 CCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGTG
* * * * * *
20914610 GCACCAGCACATGCCCGACCCCAGCATGTGCTGTCACAAACCTTGGTCCAGTCCGATCTTAGACT
772 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACT
*
20914675 GGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAAC
837 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAAC
** * **
20914739 GAGCGTGCGGGCTCTCAGCTTGCCAGAGGGGCGAGATGCGCAAGCTTGGGATC-AGTCGAGTCCC
1 GAGCGTGCGGGCTCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGAGTCCC
* * *
20914803 CCTCTGCGTGCTATTGATCC-AGCTGCCATAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATG
65 CCTCTACGTGCTATCGATCCTA-CTGCCATAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATG
* *
20914867 AACTTCGTATGCCTAAGCCACCCGACG-AAA-CGA-GCGGGCGGGC-G-GGCACTACGCCGGCCA
129 AACTCCGTATGCCTAAGCCAACCGACGAAAAGCGAGGCGGGCGGGCGGCGGCACTACGCCGGCCA
* * * *
20914927 GAAAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATAT
194 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATAT
20914992 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGT
259 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGT
* * * ** *
20915057 GAAGTTTCAGGGCAAGATGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTTATGGTTTG
324 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTTTTGGGGTTCG
* * *** *
20915122 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCTATAAACTTGGTAGACATGATCTTTGTATT
388 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
* * * *
20915187 TTTCTTTGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAAAAAATTTTGTGACCAT
453 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC---AAGATTTTGTGACCAT
*
20915252 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAA
515 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
20915317 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAAGGCCA
580 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAAGGCCA
* * * * *
20915382 ACTACCAGCACCCATCGCACATCATTTGTGCATACCCCCCGGCCCCCCCGATCGTCGGAACCCCA
645 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCA
* * * *
20915447 ATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCA
710 ATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGTGGCA
* ** *
20915512 CCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGATCTTAGATTGGG
775 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGG
* *
20915577 AATGAGCTCTGTATGC
840 AATGAACTCCGTATGC
20915593 CTAAGCTAAC
Statistics
Matches: 3116, Mismatches: 370, Indels: 115
0.87 0.10 0.03
Matches are distributed among these distances:
869 69 0.02
870 221 0.07
871 146 0.05
872 244 0.08
873 31 0.01
874 2 0.00
875 1 0.00
878 1 0.00
879 2 0.00
884 1 0.00
889 1 0.00
890 1 0.00
893 6 0.00
894 181 0.06
895 211 0.07
896 77 0.02
897 1 0.00
898 11 0.00
899 442 0.14
900 83 0.03
901 346 0.11
902 203 0.07
903 41 0.01
905 7 0.00
906 514 0.16
907 272 0.09
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
GAGCGTGCGGGCTCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGAGTCCCC
CTCTACGTGCTATCGATCCTACTGCCATAACCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGACGAAAAGCGAGGCGGGCGGGCGGCGGCACTACGCCGGCCAGA
GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTT
CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGA
AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGGGGTTCGAGA
TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT
GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAAGGCCAAGTACC
AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCA
CCGGTCAGGTTCTCCGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCA
CATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAAC
Found at i:20916740 original size:718 final size:715
Alignment explanation
Indices: 20914831--20917010 Score: 3252
Period size: 718 Copynumber: 3.1 Consensus size: 715
20914821 CCAGCTGCCA
* * *
20914831 TAACCCTCAGTCTGGT-TCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCACCCGACGA
1 TAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGA
* *
20914895 AACGAGC-G-GGCGGGCGGGC---ACTACGCCGGCCAGAAAGACAGGATGCGCAAGCCGTGGATC
65 AATGAGCGGCGGCGGGCGGGCGGGACTACGTCGGCCAGAAAGACAGGATGCGCAAGCCGTGGATC
*
20914955 GATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
130 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
* *
20915020 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCAGGGCAAGATGACTCGTTTT
195 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
** * * *
20915085 CTATTTTTCACAATTTTTGAAACTTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAG
260 CTATTTTTCATGATTTTTAAAAC-TTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGAAG
* *** * * * *
20915150 TTTTAGCTATAAACTTGGTAGACATGATCTTTGTATTTTTCTTTGCATGCACAAAAAAATTTAGC
324 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGC
*
20915215 TAAAAACTCGAAGTGTACAAAAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
389 TAAAAACTCGAAGTGTAC---AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
20915280 TTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
451 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* * * *
20915345 AGGTTTGATGAGGGATAAGGGGCCAATATAAAGGCCAACTACCAGCACCCATCGCACATCATTTG
516 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
20915410 TGCATACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-AGCGAT
581 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGAT
* * *
20915474 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTG
645 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTG
*
20915539 CTGCCG
710 CTACCG
* * * *
20915545 TAACCCTCGGTCCGGTCTGATCTTAGATTGGGAATGAGC-TCTGTATGCCTAAGCTAACCAACGA
1 TAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGA
* * **
20915609 AATGAGCGCGCGGGCGAGCGGGCGGGCACTACGTCGGCTA-AAGAGACAGGATGCGCAAGGGGTG
65 AATGAGCG-GC-GGCGGGCGGGCGGG-ACTACGTCGGCCAGAA-AGACAGGATGCGCAAGCCGTG
*
20915673 GATTGATAGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAG-ATGCCAATGCCATTTT
126 GATCGATA-GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTT
20915737 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
189 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
**
20915802 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCCGGATTTTTTAAAATTTTTTCGGA
254 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGA
* *
20915867 A-AGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
319 AGA-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAA
20915931 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
383 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
20915996 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
448 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
20916061 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
513 TCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
*
20916126 GTGCGCACACCCCCCGGCCCCGCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
578 GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACG
* * *
20916191 ATGCTCCGACGATGGTGCCCGGACGAAGAAAACTGCGACACCAGCACATGCCCGAGCCCAGCATT
643 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
*
20916256 TGCTATCG
708 TGCTACCG
* * * *
20916264 TAACCTTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTTTGCCTAAGCCAACCGACAAA
1 TAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAA
*
20916329 ATGAGCGGGCGGACGGGCGGGCGGGTACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGA
66 ATGAGC-GGCGG-CGGGCGGGCGGG-ACTACGTCGGCCAGAAAGACAGGATGCGCAAGCCGTGGA
20916394 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
128 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * *
20916459 GCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTT
193 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
* * * *
20916524 TTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTAAAAAATTTTTCGGAAGAA
258 TTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGAA
* *
20916589 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAG
323 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAG
*
20916654 CTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAGACACTT
388 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
20916719 TAATGGATACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
453 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
* *
20916784 GTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATTGCACATCATGTGCG
518 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * *
20916849 CACACCCCCCGTCCCCCCCGATCGTCGGAACCCCAATGCCACCAGTCAGGTTCT-C--C---G--
583 CACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * * * * * *
20916906 --G-CGATGGTGCCCCGTCGGAGAAAAATGTGGCACCAGCACATGCCCAACCCCAGCATGTGCTG
648 CCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTA
* *
20916968 TCA
713 CCG
* * ** *
20916971 CAACCCTTGGTTTGGTCCGATCTTAGACTGGGAATGAACT
1 TAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
20917011 CCATTTGCTT
Statistics
Matches: 1337, Mismatches: 108, Indels: 49
0.89 0.07 0.03
Matches are distributed among these distances:
707 86 0.06
708 1 0.00
712 1 0.00
713 2 0.00
714 58 0.04
715 2 0.00
716 1 0.00
717 2 0.00
718 490 0.37
719 398 0.30
720 6 0.00
721 2 0.00
722 146 0.11
723 141 0.11
724 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (715 bp):
TAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAA
ATGAGCGGCGGCGGGCGGGCGGGACTACGTCGGCCAGAAAGACAGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
TATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGAAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
ACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCG
Found at i:20917932 original size:26 final size:26
Alignment explanation
Indices: 20917903--20917955 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20917893 CCGGTCCGAT
20917903 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20917929 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20917955 C
1 C
20917956 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20918080 original size:911 final size:899
Alignment explanation
Indices: 20916282--20920797 Score: 5461
Period size: 902 Copynumber: 5.1 Consensus size: 899
20916272 GGTCCGGTCT
* * * * *
20916282 GATCTTAGACTAGGAATGAACTTCGTTTGCCTAAGCCAACCGACAAAATGAGC--GGGCGGACGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGAC-G
* * *
20916345 GCGGGCGGGTACTACGTCGGCCAGAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
65 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
20916410 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAAC
130 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
20916475 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGAT
195 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
20916540 TTTCAAAACTTTTTGCGGTTTGGGATTTTTAAAAAATTTTTCGGAAGAAGTTTTGGCCCCAAACT
260 TTTCGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
20916605 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCTAAAAACTCGAAGTG
325 TGGTAGACGTGATCCTTGTATTTTT-TTTGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTG
* * *
20916670 TACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGATACTGGCAG
389 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
* *
20916735 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
20916800 GGGGCCAATATAAGGACCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGTCCCC
519 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* *
20916865 CCCGATCGTCGGAACCCCAATGCC-ACCAGTCAGGTTCT-C-C---G---G-CGATGGTGCCCCG
584 CCCGATCGTC-GAACCCCAATGCCGTCGA-TCAGGTTCTCCGCGATGCTCGACGATGGTGCCCCG
* * * * * **
20916920 TCGGAGAAAAATGTGGCACCAGCACATGCCCAACCCCAGCATGTGCTGTCACAACCCTTGGTTTG
647 ACGGAGAAAAATGCGGCACCAGCACATGCCCGACCCCAGCATGTGCTGTCGCAACCCTCGGTCCG
* *
20916985 GTCCGATCTTAGACTGGGAATGAACTCCATTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
712 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
20917050 TCAACACACGAAACGAGCGTGCGGGCTCTCAGCTTCCCAGAGGGGCGAGATGCGCAAACCTGGGA
777 TCAACACACGAAACGAGCGTGCGGGCTCTCAGCTTGCCAGAGGGGCGAGATGCACAAGCCTGGGA
* * * *
20917115 TCGGTCGGGTCCCCCTCTGCGTGCTATTGATCCTGCTGCCATAACCCTCAGTCTGGTTC
842 TCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCT-GTTC
* * *
20917174 GATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCACCCGACGAAACGAGCGGGTGGGCGGAC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-GGGCGGAC
*
20917239 GCGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTA
64 G-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
20917304 GGTGGGTTTAGGTACATCTTCATATTGCTGCATGACAATGCCATTTTTATGGCTTCTAAATTCAT
128 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
20917369 ACAACGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA
193 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * ***
20917434 ATTTTTGAAACTTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTAGCAATAA
258 ATTTTCGAAAC-TTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * * *
20917499 ACATGGTAGACATGATCCTTGTATTTTTCTTTGCATGCACAAAAAACTTTAGCCAAAAACTCAAA
322 ACTTGGTAGACGTGATCCTTGTATTTTT-TTTGCATGCACAAAAAACTTCAGCTAAAAACTCGAA
*
20917564 GTGTACAAAAAAATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAC
386 GTGTAC---AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTAC
* * *
20917629 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTTGAGGTTTCATGAG
448 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
20917694 GGATAGGGGGCCAATATAA-GGCCAAGTACCAGCACCCATCACACATCATATGCGCAAACCCCCC
513 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
* * *
20917758 CGGCCCTCCCAACCGTCAGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATG
577 CGGCCCCCCCGATCGTC-GAACCCCAATGCCGTCGATCAGGTTCTCCG-CGATGCT-CGACGATG
* * * * *
20917823 GTGCCCTGACGGAGAAAAATGTGGCACCAGCACATGCTCGACCCCAGCATGTTCTGTCACAACCC
639 GTGCCCCGACGGAGAAAAATGCGGCACCAGCACATGCCCGACCCCAGCATGTGCTGTCGCAACCC
*
20917888 TTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
704 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
*
20917953 TGCCTAAGTCAACACACGAAACAAGCGTGCGGGCTCTCAGCTTGCCAGAGGGGCGAGATGCACAA
769 TGCCTAAGTCAACACACGAAACGAGCGTGCGGGCTCTCAGCTTGCCAGAGGGGCGAGATGCACAA
* * * * *
20918018 GCTTGGGATCGGTCGGGTCCCACTCTGCGTGCTATTGATCCTGCTACCATAACCCTCAGTCTGGT
834 GCCTGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCT-GT
20918083 TC
898 TC
* * * *
20918085 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCACCCGACGAAACGAGTGGGTG-GG-CGT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGACG-
* * * * *
20918148 GCGGGCGGGCACTACGTCGGCTAGAGAGACGGGACGCGCTACCCGTGGATCGATAGGGTGGTAGG
65 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
*
20918213 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAGTGCCATTTTTATGGCTTGTAAATTCATAC
130 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
20918278 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATACAACTCGTTTTCTATTTTTCACGAT
195 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * *
20918343 TTTCAAAAC-TTTTACGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACT
260 TTTCGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
20918407 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAACAATCAGCTAAAAACTCGAAGT
325 TGGTAGACGTGATCCTTGTATTTTT-TTTGCATGCACAAAAAAC-TTCAGCTAAAAACTCGAAGT
* *
20918471 GTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
388 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
* *
20918536 GCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGTGATA
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
** * * *
20918601 AAGGGCCGATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGCGCTG-ACACCCCCCGGCC
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC-GCACACCCCCCGGCC
* * ** * * * * * *
20918665 CTCTCGATTATCGAAACCCCAATGCCGCCAATCAGTTTCTCTGGCGATGCTCCAGGGATGGTG-C
582 CCCCCGATCGTCG-AACCCCAATGCCGTCGATCAGGTTCTC-CGCGATGCTCGA-CGATGGTGCC
* * * * * ** *
20918729 CCTAGGGAAGAAAAATACGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGG
644 CCGACGG-AGAAAAATGCGGCACCAGCACATGCCCGACCCCAGCATGTGCTGTCGCAACCCTCGG
* ** * *
20918794 TCCAGTCTAATCTTAGACT-AGAATGAACTCCGTATGCCTA-A----G--TGAAC-CC--AT---
708 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* ** * * * * *
20918845 T-A---AACGA-GCG---CGAG-G-GC--G-T-TCAGCCAGCTAGAGGTG-TAGGATGCCCAAGT
773 TAAGTCAAC-ACACGAAACGAGCGTGCGGGCTCTCAGCTTGCCAGAGGGGCGA-GATGCACAAGC
** * * * * *
20918895 C-GAGGATCGACCTGG-ACCCCTCTGCATGCTGTCGATCCTACTGCCACAACCCTCAGTCTAG-T
836 CTG-GGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCT-GTT
20918957 C
899 C
* * * * *
20918958 CATTCTTAGATTGGGAAGGAAGTCCATATGCCTAAGCCAACCGACGAAACGA------GC-G--G
1 GA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGACG
* * * * *
20919014 GCGGGCGGGCACAACGCCGGCCAAAGAGACGGGACGTGCAAGCCGTGGATCAATAGGGTGGTAGG
65 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
***
20919079 TGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
130 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
20919144 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGCT
195 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* ** * *
20919209 TTTCGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTCTTTCGGAAGGGGTTTTGGCCCCAAACT
260 TTTCGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
20919274 TGGTAGACATGATCCTTGTATTTTTTTTGGCATCCACAAAGAAA-ATCAGCTAAAAACTCGAAGT
325 TGGTAGACGTGATCCTTGTATTTTTTTT-GCATGCACAAA-AAACTTCAGCTAAAAACTCGAAGT
*
20919338 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAA-ACTTTAAAGGCTACTGGC
388 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA-AACACTTTAATGGCTACTGGC
* * *
20919402 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTACTTGAGGTTTGATGAGGGAT
452 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
20919467 AAGGGGCCAATATAAGGGCCAGGTACCAACACCCATCG-ATCATCATGTGCGCACACCCCCCGG-
517 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA-CATCATGTGCGCACACCCCCCGGC
* * *
20919530 CACCCCGATCATCGAAACCCCAATGCCG-CTGATCAGGTTCT-C-C-A----C--CGTTGGTGCC
581 CCCCCCGATCGTCG-AACCCCAATGCCGTC-GATCAGGTTCTCCGCGATGCTCGACGATGGTGCC
* * * * * * * *
20919585 CCGACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAGCATGTGTTGTTGTAACCCTCAGT
644 CCGACGGAGAAAAATGCGGCACCAGCACATGCCCGACCCCAGCATGTGCTGTCGCAACCCTCGGT
* * * * * *
20919650 CTGGGCCGATCTTAGACTGAGAAAGAACTCCGTATGCCTAGACTGGGAATGAACTCTGTATGCCT
709 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * *
20919715 ATGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGC-CGCCAGAGGGACGAGATGCATAAGCCAG
774 AAGTCAACACACGAAACGAGCGTGCGGGCTCTCAGCTTGCCAGAGGGGCGAGATGCACAAGCCTG
** * * *
20919779 GGATCGGTCGGGTCCCTTTCTGTGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCT-ATC
839 GGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCAGT-CTGTTC
* ** *
20919840 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAAATGATGAAACGAGCGGCGGGC--A-
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-GGGCGGAC
* * * * * *
20919902 AGCAGGCGGGCACTGCACCGGCCAGAGAGACGGGATGCGCAAACCATGGATCGATAGGGTGGTAG
64 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * *
20919967 GTGGGTTTAGGCACATCTTCATACTTTCTGCGTGCCAATGCCATTTTTATAGATTGTAAATTCAT
129 GTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
20920032 ACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTATTCACG
193 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * * * *
20920097 ATTTTTGAAACTTTTTACGGTTCGGGAATTTTTT-AAATTTTTTCGAAAGGGGTTTTGGCCCCTA
258 ATTTTCGAAACTTTTTGCGGTTTGGG-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* *
20920161 ACTTGGTAAACGTGATCCTTGTATTTTTTTTGGCATGCA-TAAAAACATTCAGCTAAAAACTCGA
322 ACTTGGTAGACGTGATCCTTGTATTTTTTTT-GCATGCACAAAAAAC-TTCAGCTAAAAACTCGA
* * * **
20920225 TGTGTACAAGATTTTGTGACTATATGAAAAAAGTGTCTGCATTTCAAACACTTTAATGGCTACTG
385 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTG
* *
20920290 GCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGCTGAGGG
450 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * *
20920355 ATAGGCGGCCAATATAAGGGCCAAGTACCAGTACCCATCGTACATCATGTGTGCACACCCCCCGG
515 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * *
20920420 CCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTTCGACGATGGTG
580 CCCCCCCGATCG-TCGAACCCCAATGCCGTCGATCAGGTTCTCCG-CGATGC-TCGACGATGGTG
** * * * *
20920485 CCCCGGTGAAGAAAAATACGGCAGCAGCACATGCCCGAACCCAGCATGTGCTGTCGCAACCCTCG
642 CCCCGACGGAGAAAAATGCGGCACCAGCACATGCCCGACCCCAGCATGTGCTGTCGCAACCCTCG
* * * * *
20920550 GTCCGATCTGATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTAGGAATGAACTTCGTATGC
707 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * *
20920615 CTATGTCAACGCACGAAATGAGAGTGCGGGCGCTCAG-TCGGCCAGAGGGGCGGGATGCGCAAGC
772 CTAAGTCAACACACGAAACGAGCGTGCGGGCTCTCAGCT-TGCCAGAGGGGCGAGATGCACAAGC
* * * * * * * * *
20920679 CGGGGATCGGTCGGGTCCCCCTTTGCATGTTGTAGATCTTGCTACCGCAACCCTCAATCCTGTCC
836 CTGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCAGT-CTGTTC
* * * *
20920744 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
20920798 TGCGGGGGCT
Statistics
Matches: 3123, Mismatches: 393, Indels: 205
0.84 0.11 0.06
Matches are distributed among these distances:
855 68 0.02
856 25 0.01
857 1 0.00
858 1 0.00
861 1 0.00
862 1 0.00
863 6 0.00
864 1 0.00
865 1 0.00
866 227 0.07
867 272 0.09
868 5 0.00
869 4 0.00
873 8 0.00
874 82 0.03
875 31 0.01
876 5 0.00
877 2 0.00
878 2 0.00
879 2 0.00
880 2 0.00
881 28 0.01
882 84 0.03
883 3 0.00
884 5 0.00
885 1 0.00
887 1 0.00
888 4 0.00
889 83 0.03
890 369 0.12
891 42 0.01
892 52 0.02
893 2 0.00
894 6 0.00
895 2 0.00
896 197 0.06
897 107 0.03
899 34 0.01
900 173 0.06
901 30 0.01
902 395 0.13
903 151 0.05
904 8 0.00
905 101 0.03
906 1 0.00
907 188 0.06
908 2 0.00
909 2 0.00
910 3 0.00
911 302 0.10
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGACGG
CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTCGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTTTTGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
CGATCGTCGAACCCCAATGCCGTCGATCAGGTTCTCCGCGATGCTCGACGATGGTGCCCCGACGG
AGAAAAATGCGGCACCAGCACATGCCCGACCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CACACGAAACGAGCGTGCGGGCTCTCAGCTTGCCAGAGGGGCGAGATGCACAAGCCTGGGATCGG
TCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCACAACCCTCAGTCTGTTC
Found at i:20919703 original size:26 final size:26
Alignment explanation
Indices: 20919662--20919715 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
20919652 GGGCCGATCT
20919662 TAGACTGAGAAAGAACTCCGTATGCC
1 TAGACTGAGAAAGAACTCCGTATGCC
* * *
20919688 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGAGAAAGAACTCCGTATGCC
20919714 TA
1 TA
20919716 TGTCAACCCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
TAGACTGAGAAAGAACTCCGTATGCC
Found at i:20920913 original size:160 final size:159
Alignment explanation
Indices: 20920588--20920944 Score: 437
Period size: 160 Copynumber: 2.2 Consensus size: 159
20920578 ACTCCGCATG
* * * * * *
20920588 CTTAGACTAGGAATGAACTTCGTATGCCTATGTCAACGCACGAAATGAGAGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCGCTCAGC
* * * * *
20920653 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGCATGTTGTAGATCT
66 CAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTAGATCC
20920718 TGCTACCGCAACCCTCAATCCTGTCCAAT
131 TGCTACCGCAACCCTCAATCCTGTCCAAT
* * *
20920747 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGGGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCGCTCAGC
* * * *
20920812 CAAGCCAGAGGGGCGGGATGCTCAAGCTGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATC
66 C-AGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTAGATC
* * * ** **
20920877 CTGCTGCTGGAACCCTTGAT-CTGGTCGGAT
130 CTGCTACCGCAACCCTCAATCCT-GTCCAAT
* * *
20920907 CTTAGACTGGGAATGAACTCCATATGACTAAGCCAACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
20920945 GACAAAATGA
Statistics
Matches: 168, Mismatches: 28, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
159 59 0.35
160 109 0.65
ACGTcount: A:0.22, C:0.27, G:0.30, T:0.21
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGTGCGGGCGCTCAGC
CAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCATGCTGTAGATCC
TGCTACCGCAACCCTCAATCCTGTCCAAT
Found at i:20922176 original size:844 final size:842
Alignment explanation
Indices: 20920853--20922502 Score: 2407
Period size: 844 Copynumber: 2.0 Consensus size: 842
20920843 GATCGGCCGG
* * * * *
20920853 GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGGAACCCTTGATCTGGTCGGATCTTAGACTGGG
1 GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGGAACACTAGATCTGATCGGATCTTAGACTAGG
* * *
20920918 AATGAACTCCATATGACTAAGCCAACCGACAAAATGAATGCGGAGGCGGGCGGGCGGTCACTACG
66 AATGAACTCCATATGACTAAGCCAACCGACAAAACGAACGCGGAGGCGGGCGGGCGGGCACTACG
** * * *
20920983 CCGGCCAAAGAGACGGGATGCCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCTTCT
131 CCAACCAAAGAGACGGGATGCCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCT
20921048 TCATATTTGCATAACAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
196 TCATATTTGCATAACAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
20921113 ACGTGAAGTTTCATGGTAAGATGACTCGTTATCGATTTTTCACGATTTGGAAAACTTTTTGCGGT
261 ACGCGAAGTTTCATGGCAAGACGACTCGTTATCGATTTTTCACGATTTGGAAAACTTTTTACGGT
* *
20921178 TCAGAATTTTTCAAAATTTTTACGAAAGGATTTTTGGCCCCAAACTAGGTAGACGTGATCCTTGT
326 TCAGAATTTTTAAAAATTTTTACGAAAGGAGTTTTGGCCCCAAACTAGGTAGACGTGATCCTTGT
* * *
20921243 ATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAAACTCAAAATGTACAAGATTTTGTGACCA
391 ATTTTTGTTGGCATGAACAAAAAAATTCAGCTAAAAAACTCAAAATGTACAAGATTTTGTGACCA
*
20921308 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCA
456 TTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
20921373 AATGCACTTTAAGG-GAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
521 AATGCACTTTAAGGAG-GTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGC
* * * * * *
20921437 CAAGTACCAGTACCTATCGCACATCATGTGCGCGCACCCCCCG-GCCCCCCGATCACCGAAACCC
585 CAAATACCAGCACCCATCGCACATCATGTGCACACACCCCCCGAACCCCCCGATCACCGAAACCC
** *
20921501 CAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATATGG
650 CAATGCCGCCGGTCAGGTTCTCC-ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGG
* * * * *
20921566 C-ACCAGCACCTGCCCGAGCCCAGTATGTGCTGCTGCAACCCTCGGTTCGGTCTGATCTTAGACT
714 CTA-CAGCACATGCCCGAGCCCAGCATGTGCTGCTACAACCCTCGATTCGGTC-AATCTTAGACT
*
20921630 GGGAATGAACTCCGTCTGCCTAAGTCAACCCACGAAATGAGCGTGCGTAAGCCGATGATCGATCG
777 GGGAATGAACTCCGTCTGCCTAAGCCAACCCACGAAATGAGCGTGCGTAAGCCGATGATCGATCG
20921695 A
842 A
* * * *
20921696 GTCCCCCTCTGCGTGCTGTCGTTCCTGTTGCCGTAACACTCAG-TCTGATCTGATCTTAGACTAG
1 GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGGAACACT-AGATCTGATCGGATCTTAGACTAG
* ** * *
20921760 GAATGAGCTCTGTATGACTAAGCCAACCGACGAAACGAACG-GGCGAGCGGGCGGGCGGGCACTA
65 GAATGAACTCCATATGACTAAGCCAACCGACAAAACGAACGCGGAG-GCGGGCGGGCGGGCACTA
* * * *
20921824 CGTCAACCAGAGAGGCGGGATGCGCAAGCCGTGGATCGTTAGGGTGGTAGGTGGGTTTACGCACA
129 CGCCAACCAAAGAGACGGGATGC-CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACGCACA
** *** * *
20921889 TCTTCATATTTCTGTGTGTGAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAG
193 TCTTCATA-TT-TGCATAACAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * **
20921954 CCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTG-AAGGTTTTT
256 CCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTATCGATTTTTCACGATTTGGAAAACTTTTT
* * * * *
20922018 ACGGTTCGGGATTTTTAAAAATTTTTTCGAAAGGAGTTTTGGCCCCGAACTTGGTAGAC-TCGAT
321 ACGGTTCAGAATTTTTAAAAATTTTTACGAAAGGAGTTTTGGCCCCAAACTAGGTAGACGT-GAT
* * *
20922082 CCTTGTATTTTTGTTGGCATGAACAAAAGAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTG
385 CCTTGTATTTTTGTTGGCATGAACAAAAAAATTCAGCTAAAAAACTCAAAATGTACAAGATTTTG
** *
20922146 TGATGATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
450 TGACCATTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAA
20922211 ATCTCAAATGCACTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATA
515 ATCTCAAATGCACTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATA
* ** *
20922276 AGGGCCAAATACCAGCACCCATCGCACATCATGTGCATACACCCCCCGAACCCCCCGATCGTCGG
580 AGGGCCAAATACCAGCACCCATCGCACATCATGTGCACACACCCCCCGAACCCCCCGATCACCGA
*
20922341 AACCCGAATGCCGCCGGTCAGGTTCTCCACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
645 AACCCCAATGCCGCCGGTCAGGTTCTCCACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* *
20922406 GTGGCTACAGCACATGCCCGAGCCTAGCATGTGCTGCTACAACCCTCGATTCGGTCAATCTTAGA
710 ATGGCTACAGCACATGCCCGAGCCCAGCATGTGCTGCTACAACCCTCGATTCGGTCAATCTTAGA
20922471 CTGGGAATGAACTCCGTCTGCCTAAGCCAACC
775 CTGGGAATGAACTCCGTCTGCCTAAGCCAACC
20922503 GATGAAACGA
Statistics
Matches: 715, Mismatches: 83, Indels: 18
0.88 0.10 0.02
Matches are distributed among these distances:
842 3 0.00
843 162 0.23
844 317 0.44
845 138 0.19
846 95 0.13
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (842 bp):
GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGGAACACTAGATCTGATCGGATCTTAGACTAGG
AATGAACTCCATATGACTAAGCCAACCGACAAAACGAACGCGGAGGCGGGCGGGCGGGCACTACG
CCAACCAAAGAGACGGGATGCCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCT
TCATATTTGCATAACAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGCGAAGTTTCATGGCAAGACGACTCGTTATCGATTTTTCACGATTTGGAAAACTTTTTACGGT
TCAGAATTTTTAAAAATTTTTACGAAAGGAGTTTTGGCCCCAAACTAGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGAACAAAAAAATTCAGCTAAAAAACTCAAAATGTACAAGATTTTGTGACCA
TTGGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCACTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCC
AAATACCAGCACCCATCGCACATCATGTGCACACACCCCCCGAACCCCCCGATCACCGAAACCCC
AATGCCGCCGGTCAGGTTCTCCACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCT
ACAGCACATGCCCGAGCCCAGCATGTGCTGCTACAACCCTCGATTCGGTCAATCTTAGACTGGGA
ATGAACTCCGTCTGCCTAAGCCAACCCACGAAATGAGCGTGCGTAAGCCGATGATCGATCGA
Found at i:20923745 original size:716 final size:711
Alignment explanation
Indices: 20921724--20923933 Score: 3006
Period size: 716 Copynumber: 3.1 Consensus size: 711
20921714 TCGTTCCTGT
* * * ** * * * *
20921724 TGCCGTAACACTCAGTCTGATCTGATCTTAGACTAGGAATGAGCTCTGTATGACTAAGCCAACCG
1 TGCCGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * ** *
20921789 ACGAAACGAACGGGCGA-GCGGGCGGGCGGGCACTACGTCAACCAGAGAGGCGGGATGC-GCAAG
66 ACGAAACGAGCGGGC-ACG-GGGC-GGCGTGCA-TACGCCGGCCAGAGAGACGGGAT-CTGCAAG
* * ** **
20921852 CCGTGGATCGTTAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTGTGTGTGAATGCCAT
126 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * *
20921917 TTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGCGAAGTTTCATGGCAAGACG
191 TTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** * * *
20921982 ACTCGTTTTCTATTTTTCACGATTTTGAAGGTTTTTACGGTTCGGGATTTTTAAAAATTTTTTCG
256 ACTCG-TTTCTATTTTTCACGATTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
* * *
20922047 AAAGGAGTTTTGGCCCCGAACTTGGTAGAC-TCGATCCTTGTATTTTTGTTGGCATGAACAAAAG
320 GAAGGAGTTTTGGCCCCGAACTTGGTAGACGT-GATCCTTGTATTTTTGTTGGCATGCACAAAAA
** *
20922111 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATGATTGGAAAAAAGTGTCCCCATTTCA
384 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
20922176 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGAGGTGTGAGT
449 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
20922241 TCTCAAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATC
514 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
20922306 ATGTGCATACACCCCCCGAACCCCCCGATCGTCGGAACCCGAATGCCGCCGGTCAGGTTCTCC-A
579 ATGTGCACACACCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* *
20922370 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCTA-CAGCACATGCCCGA-GCCTAG
643 TGATGCTCCGACGATGGTGCCCCG-GGAAGAAAAATGTGGC-ACCAGCACATGCCCGAGGCC-AG
20922433 CATGTGC
705 CATGTGC
*** * *
20922440 TGCTACAACCCTC-GATTCGGT-CAATCTTAGACTGGGAATGAACTCCGTCTGCCTAAGCCAACC
1 TGCCGTAACCCTCAG-TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
20922503 GATGAAACGAGCGGG--C-GGGC-GC-T--AT--GCTGGCTAGAAAGACGGGATGTGCAAGCCGT
65 GACGAAACGAGCGGGCACGGGGCGGCGTGCATACGCCGGCCAGAGAGACGGGATCTGCAAGCCGT
* * *
20922559 GGATCGATAGGGTGGTAGGTGGGTATAGGCACATCGTCGTATTTCTACGTGCCAATGCCATTTTT
130 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* * *
20922624 ATGGCTTGTAAGATCATACATTGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGACGACTC
195 ATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
20922689 GATTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTTGGAA
260 G-TTTCTATTTTTCACGA-TTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
*
20922754 GGAGTTTTGG-CCCGAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-CAAAAAAATT
323 GGAGTTTTGGCCCCGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* * *
20922817 CAGCTAAAAACTTGAAGTGTACAACATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACA
388 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
20922882 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
453 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
20922947 GAGGTTTGATGAGGGATAGGGGGCCAATAAAAGTGCCAAGTACCAGCACCTATCGCACATTATGT
518 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * *
20923012 GCACAAACCCCCCGGCCCCCCAGATTGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGAT
583 GCACACACCCCCCGGCCCCCC-GATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGAT
* *
20923077 GCTCCGACGATCGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGGCCGAGGCCAGCATGTG
647 GCTCCGACGATGGTGCCCCGG-GAAGAAAAATGTGGCACCAGCACATGCCCGAGGCCAGCATGTG
20923142 C
711 C
* *
20923143 TGCCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCG
1 TGCCGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
20923208 ACAAAACGAGCGGGCACGGGGCAGGCGTGCATTACACCGGCCAGAGAGACGGGATCTGCAAGTCA
66 ACGAAACGAGCGGGCACGGGGC-GGCGTGCA-TACGCCGGCCAGAGAGACGGGATCTGCAAGCCG
* *
20923273 TGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
129 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
20923338 TATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
194 TATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
*
20923403 -GTTCTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
259 CGTT-TCTATTTTTCACGATTTT-AAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * *
20923467 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAAA
322 AGGAGTTTTGGCCCCGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
20923532 TCAGCTAAAAACTCGAAGTG-AGCAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGA
387 TCAGCTAAAAACTCGAAGTGTA-CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * * *
20923596 CACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTTAAATGGTCTTTAAGGGGGTGTGAGTTC
451 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
20923661 TTGAGGTTTGATGAGGGATAGGGGGCCCATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
516 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * *
20923726 GTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCATCAGTTAGGTTCTTCGATA
581 GTGCACACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATG
** *
20923791 ATGCTCC-AGCGATGGTGCCCCGAGGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAT
645 ATGCTCCGA-CGATGGTGCCCCG-GGAAGAAAAATGTGGCACCAGCACATGCCCGAGGCCAGCAT
20923855 GTGC
708 GTGC
* * * * * *
20923859 TGCCGTAACCCTCGGTTCAGTCCAATCTTAGACTGGGAATGAAATCCGTATGCCAAAGCCAACCC
1 TGCCGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
*
20923924 ACGAACCGAG
66 ACGAAACGAG
20923934 TGTACGGGCA
Statistics
Matches: 1312, Mismatches: 151, Indels: 62
0.86 0.10 0.04
Matches are distributed among these distances:
701 6 0.00
702 235 0.18
703 267 0.20
704 104 0.08
705 1 0.00
706 2 0.00
707 4 0.00
709 4 0.00
710 1 0.00
711 4 0.00
712 1 0.00
713 7 0.01
714 64 0.05
715 236 0.18
716 369 0.28
717 7 0.01
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.26
Consensus pattern (711 bp):
TGCCGTAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCACGGGGCGGCGTGCATACGCCGGCCAGAGAGACGGGATCTGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
TGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTCTATTTTTCACGATTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCGAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCA
CACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTC
CGACGATGGTGCCCCGGGAAGAAAAATGTGGCACCAGCACATGCCCGAGGCCAGCATGTGC
Found at i:20926956 original size:875 final size:875
Alignment explanation
Indices: 20923140--20928285 Score: 7231
Period size: 875 Copynumber: 5.9 Consensus size: 875
20923130 GGCCAGCATG
* * * * * *
20923140 TGCTGCCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCTGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
20923205 CCGACAAAACGAGCGGGCA-CG-GGGCAGGCGTGCATTACACCGGCCAGAGAGACGGGAT-CTGC
66 CTGACAAAACGAGCGAG-AGGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC-GC
* * * *
20923267 AAGTCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
129 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
20923332 CATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * **
20923397 ACGACT-GTTCTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
259 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
*
20923461 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCACAA
324 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
20923526 AAAAAATCAGCTAAAAACTCGAAGTG-AGCAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCAT
389 AAAAATTCAGCTAAAAACTCAAAGTGTA-CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * *
20923590 TTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTTAAATGGTCTTTAAGGGGGTGT
453 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
20923655 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCCATATAAGGGCCAAGTACCAGCACCCATCACA
518 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
** * *
20923720 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCATCAGTTAGGTTCT
583 CATCATGTGCGCACA-CCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCT
* * * *
20923785 TCGATAATGCTCC-AGCGATGGTGCCCCGAG-GAAGAAAAATGCAGCACCAGCACATGCCCGAGC
646 CCGGTGATGCTCCGA-CGATGGTGCCCC-AGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
20923848 CCAGCATGTGCTGCCGTAACCCTCGGTTCAGTCCAATCTTAGACTGGGAATGAAATCCGTATGCC
709 CCAGCATGTGCTGCCGCAACCCTTGGTCCAGTCCGATCTTAGACAGGGAATGAACTCCGTATGCC
* * * * * * * *
20923913 AAAGC-CAACCCACGAACCGAGTGTACGGGCACTCAGTCGACCATAGGGGCGGGATACGGAAGCC
774 TAA-CTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCC
* *
20923977 AAGGATCGGTTGGGTCCCCCTCTGCGTGCTGCTGATCC
838 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
* *
20924015 TGCTACCGCAACCCT-TGGT-TCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
1 TGCTGCCGCAACCCTCT-GTCT-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * * * *
20924078 AACCGATGAAAC-A---AGCGGGCGGGCGGGTGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
64 AACTGACAAAACGAGCGAGAGGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* **
20924139 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGC
129 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
20924204 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
20924269 ACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCAGTTC-ATGATTTTTTAAAATTT
259 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTT
* * * *
20924333 TTTCGGAAGGAGTTTTGACCCCAAACTTTGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACA
323 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * **
20924398 AAAATATTCAGCT-AAAACTTCAAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGT-TTCA
388 AAAAAATTCAGCTAAAAAC-TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
20924461 TTTTAGACACTTTAATGGCTACTGGTAGCGAACATGTAAAATCTCAAATGCACTTTAAGGGGGTG
452 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
20924526 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
517 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
20924591 ACATCATGCGCGCACACCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
582 ACATCATGTGCGCACACCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTC
* *
20924656 CAGTGATGCTCCGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCA
647 CGGTGATGCTCCGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
20924721 TCATGTGCTGCCGTAACCCTTGGTCCAGTCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAA
712 GCATGTGCTGCCGCAACCCTTGGTCCAGTCCGATCTTAGACAGGGAATGAACTCCGTATGCCTAA
* * ** * * * *
20924786 CTCAACCCAAGAAACGAGCGTGTGGGTGCTCAGCCAACCAGAGGGGTGTGATGCACAAGCCGAGG
777 CTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGG
***
20924851 ATCGGTCGGGTCCCCCTCTGCACACTG-TCGATCC
842 ATCGGTCGGGTCCCCCTCTGCGTGCTGCT-GATCC
20924885 TGCTGCCGCAACCCTCTGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCTGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
20924950 CTGACGAAATGAGCGAGAGGGTGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATTCGCAA
66 CTGACAAAACGAGCGAGAGGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
20925015 GCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
20925080 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
20925145 GACTCGTTTTCTATTTTTCACGACTTTTGAAACTTTTTGTAGTTCG-GAATTTCTTAAAATTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAG-ATTTTTTAAAATTTTT
* * * *
20925209 TTGGAAGGATTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACTAA
325 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
20925274 AAAATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTT
390 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
20925339 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * **
20925404 GTTCTCGAGGTTTGATGAAGGATAGGAGGCCAATATAAGGGACAAGTATTAGCACCCATCGCACA
520 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
20925469 TCATGTGCGCACACCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCTGGTTCTCCG
585 TCATGTGCGCACACCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCG
* * * * *
20925534 GCGATGCTTCGGCGATGGTGCCCC-GATGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAG
649 GTGATGCTCCGACGATGGTGCCCCAG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
20925598 CATGTGCTGCCGCAACCCTTGGT-CTGATCCGATCTTAG-CTGGGGAATGAACTCTGTATGCCTT
713 CATGTGCTGCCGCAACCCTTGGTCCAG-TCCGATCTTAGAC-AGGGAATGAACTCCGTATGCCTA
* * * * *
20925661 AGTCAACCCACGAAACGAGCGTGCGAGCACTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGG
776 ACTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAG
* *
20925726 GGTCGGTCGAGTCCCCCTCTGCGTGCTGCTGATCC
841 GATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * *
20925761 TGCTGCCCACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCA
1 TGCTG-CCGCAACCCTCTGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * *
20925826 ACTGACAAAACGAGCGGGCTGGAGGGCGGGCAGGCACTACGTCGGCCAGAGAGACAGGATGCGTA
65 ACTGACAAAACGAGCGAGAGGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * * *
20925891 AGTCGTGGATCGATAGGGTGGAAGGTGGGTTTGGGTACTTCTCCATATTTCTGCATGCCAATGCC
130 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
20925956 ATTCTTATGGCTTGTAAAATCATACAATGGTCCCTTCAGCCTTCACGTGATGTTTCATGGCAAGA
195 ATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
20926021 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-CTGGTTCGGGATTTTTTAAAATTTT
260 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC-GGTTCGAGATTTTTTAAAATTTT
* * * * *
20926085 TTCGGAAGTAGTTTTGGCCCAAAACTTGGTATACATGATCCTTGTATTTTTTTTGGCATGCACAA
324 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
** *
20926150 AAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATT
389 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
20926215 TCAGACACTTTAATGGCAACTGACAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGAGGTGTG
454 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
20926280 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
519 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
20926345 ATCATGCGCGCACACCCTCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCA
584 ATCATGTGCGCACACCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCG
* *
20926410 GTGATGCTCCGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCATATGCCCGAGCCCATC
649 GTGATGCTCCGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* *
20926475 ATGTGCTGCCGTAACCCTTGGTCCAGTCTGATCTTAGACAGGGAATGAACTCCGTATGCCTAACT
714 ATGTGCTGCCGCAACCCTTGGTCCAGTCCGATCTTAGACAGGGAATGAACTCCGTATGCCTAACT
* * ** * * * *
20926540 CAACCCAAGAAACGAGCGTGTGGGTGCTCAGCCAACCAGAGGGGTGTGATGCACAAGCCGAGGAT
779 CAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGAT
***
20926605 CGGTCGGGTCCCCCTCTGCACACTG-TCGATCC
844 CGGTCGGGTCCCCCTCTGCGTGCTGCT-GATCC
20926637 TGCTGCCGCAACCCTCTGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCTGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
20926702 CTGACGAAATGAGCGAGAGGGTGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATTCGCAA
66 CTGACAAAACGAGCGAGAGGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
20926767 GCCGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
20926832 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
20926897 GACTCGTTTTCTATTTTTCACGATGTTTGAAAATTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * ** *
20926962 TGGAAGGATTTTTGGCCCCAAACTT-AAAGGACGTGATCCTTGTATTTTTGTTGGCATGCACTAA
326 CGGAAGGAGTTTTGGCCCCAAACTTGGTA-GACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
20927026 AAAATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAACGTGTCCCCATTT
390 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
20927091 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * **
20927156 GTTCTCGAGGTTTGATGAAGGATAGGAGGCCAATATAAGGGACAAGTATTAGCACCCATCGCACA
520 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
20927221 TCATGTGCGCACACCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCTGGTTCTCCG
585 TCATGTGCGCACACCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCG
* * * * *
20927286 GCGATGCTTCGGCGATGGTGCCCC-GATGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAG
649 GTGATGCTCCGACGATGGTGCCCCAG-TGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
20927350 CATGTGCTGCCGCAACCCTTGGT-CTGATCCGATCTTAG-CTGGGGAATGAACTCTGTATGCCTT
713 CATGTGCTGCCGCAACCCTTGGTCCAG-TCCGATCTTAGAC-AGGGAATGAACTCCGTATGCCTA
* * * * *
20927413 AGTCAACCCACGAAACGAGCGTGCGAGCACTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGG
776 ACTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAG
* *
20927478 GGTCGGTCGAGTCCCCCTCTGCGTGCTGCTGATCC
841 GATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCC
* * *
20927513 TGCTG-CACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCTGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * * *
20927577 CTGACAAAACGAGCGGGCTGGAGGGCGGGCAGGCACTACGTCGGCCAGAGAGACAGGATGCGTAA
66 CTGACAAAACGAGCGAGAGGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
20927642 GTCGTGGATCGATAGGGTGGAAGGTGGGTTTGGGTACTTCTCCATATTTCTGCATGCCAATGCCA
131 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
20927707 TTCTTATGGCTTGTAAAATCATACAATGGTCCCTTCAGCCTTCACGTGATGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
20927772 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-CTGGTTCGGGATTTTTTAAAATTTTT
261 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGC-GGTTCGAGATTTTTTAAAATTTTT
* * * * *
20927836 TCGGAAGTAGTTTTGGCCCAAAACTTGGTATACATGATCCTTGTATTTTTTTTGGCATGCACAAA
325 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
** * * **
20927901 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTATCCCTTTTT
390 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
20927966 AAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGGTGTG
455 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTG
* *
20928031 AGTTCTCAAGGTTTGATGA-GGATAGGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCA
519 AGTTCTCGAGGTTTGATGAGGGATA-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
** * *
20928095 CATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGGAACCCCAATGTCACCGGTCAGGTTCTC
583 CATCATGTGCGCACA-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTC
* * * * * * *
20928160 CGGTGACGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATGCTGCACCAACACATGCCCGAGCCCA
647 CGGTGATGCTCCGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* ** * * * * *
20928225 GCATGTGCTGCCACAACCCTCAGTCCAATTCGATCTTCGACTGGGAATGAACTCCATATGC
712 GCATGTGCTGCCGCAACCCTTGGTCCAGTCCGATCTTAGACAGGGAATGAACTCCGTATGC
20928286 TTAGACTGGG
Statistics
Matches: 3791, Mismatches: 430, Indels: 99
0.88 0.10 0.02
Matches are distributed among these distances:
869 4 0.00
870 289 0.08
871 12 0.00
872 302 0.08
873 157 0.04
874 336 0.09
875 1211 0.32
876 925 0.24
877 554 0.15
878 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (875 bp):
TGCTGCCGCAACCCTCTGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CTGACAAAACGAGCGAGAGGGAGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
TTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCATCGGTCAGGTTCTCCGGT
GATGCTCCGACGATGGTGCCCCAGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTTGGTCCAGTCCGATCTTAGACAGGGAATGAACTCCGTATGCCTAACTCA
ACCCACGAAACGAGCGTGCGGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCG
GTCGGGTCCCCCTCTGCGTGCTGCTGATCC
Found at i:20928487 original size:11 final size:11
Alignment explanation
Indices: 20928468--20928500 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
20928458 CGATCAGGTT
20928468 CTCCGACGATG
1 CTCCGACGATG
*
20928479 CTCCAACGATG
1 CTCCGACGATG
20928490 CTCCGACGATG
1 CTCCGACGATG
20928501 GTGCCCCGAC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.21, C:0.36, G:0.24, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:20928610 original size:26 final size:26
Alignment explanation
Indices: 20928581--20928633 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
20928571 CCGGTCTGAT
20928581 CTTAAACTGGGAATAAACTCTGTATG
1 CTTAAACTGGGAATAAACTCTGTATG
** * *
20928607 CTTAGGCTGGGAATGAACTTTGTATG
1 CTTAAACTGGGAATAAACTCTGTATG
20928633 C
1 C
20928634 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCTGTATG
Found at i:20930250 original size:896 final size:894
Alignment explanation
Indices: 20928479--20939475 Score: 12806
Period size: 896 Copynumber: 12.4 Consensus size: 894
20928469 TCCGACGATG
* * * * *
20928479 CTCCAACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCATCAACACATGCCCGAGC
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * * * * * *
20928544 CCAGCAAGTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAAACTGGGAATAAACTCTGTATGCT
66 CCAACATGTGCTGTCGCAACCCTCTGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * *
20928609 TAGGCTGGGAATGAACTTTGTATGCCTAAGTCAACACATGAAACAAGCGTGCGGACGCTCAGCCG
131 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
20928674 ACCATAAGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
196 GCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
* * * * * * * ** *
20928739 TTGCCTCAACCCTCGATCCGATCCGATCTTAGATTGGGAATGAGCTTTGTATGCCTAAGCCAACT
261 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * *
20928804 GATGCAATGAGCGGGCGGGCGGGCGGGCAAGCACTACGCCGACGAGAGAGACGGGATGCGTAAGC
326 GAT--AA--AACGAGCGGGCGGGC-GG---GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
20928869 CGTGGGTCGATAGGGTGGTAGGTGGGTTTAGGCACATCGTCATATTTCTGCATGCCAATGCCATT
383 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
20928934 TTTATGGCTTGTAAATGCATACAATGGTCCTTTAAGCCTTGACGTGAAGTTTCATGGCAAGATGA
448 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * **
20928999 CTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
513 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTG
* * * *
20929064 GAAGGA-TTGCTGGCCCAAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
578 GAAGGAGTT-TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAA
* *
20929128 AAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTC
641 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
20929193 AGACACTTTAATGGCAACTGACAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGAGGTGTGAG
706 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
20929258 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT
771 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
20929323 CATGTGCGCACACCCCCTCGGCCCCCTGATCGTCGGAACCCTAATGCTGCCGGTCAAGTT
836 CATGTGCGCACACCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTT
* ** * * * *
20929383 CCCCGACGATGCTCCGGCGATGGTGCCCCGGGGAAGAAAAATGCGACACCAGAACATGCCTGAGC
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * * **
20929448 GCAACATGTGCTGCTC-CAATCATCTGTTCAGTCTGATCTTAGACTGGGAATGAACTCTATATGC
66 CCAACATGTGCTG-TCGCAACCCTCTGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * ** *
20929512 TGAGATTGGCAAAGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCATGTAGCCGCTCAGCC
130 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
20929577 GGCCAGAGGGGCGGGATGTGCAAGCTAGGGATCGACCGGGTCCCTCTCTACATGCTGTTGATCCT
195 GGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * * *
20929642 GCTGTCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
260 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
20929707 CGACAAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAAACGGGATGCGCAAGCCATGGAT
325 CGATAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * **
20929772 CGATAGGGTGGTAGGTGGGTTTTGGCTCATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGG
390 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
20929837 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTT
455 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* *
20929902 TCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAT
520 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAG
* * *
20929967 TTTTGTCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGC
585 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* *
20930032 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTCAGATACTTT
650 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
20930097 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
715 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
*
20930162 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGC
780 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* ** *
20930227 ACACCCCCTCGGCCCCTCTGATCGTCGGAACCTTAATGCTGCCAGTCAAGTT
845 ACACCCCC-CGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTT
* * * ** * * * *
20930279 CCCCGGCGATGCTCCGACGATGGTGCCCCGGGGAAGAAAAATGCGACACCAGAACATGCCTGAGC
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * * **
20930344 GCAACATGTGCTGCTC-CAATCATCTGTTCAGTCTGATCTTAGACTGGGAATGAACTCTATATGC
66 CCAACATGTGCTG-TCGCAACCCTCTGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * ** *
20930408 TGAGATTGGCGAA-GAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCATGTAGCCGCTCAGC
130 TTAGACTGG-GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
20930472 CGGCCAGAGGGGCGGGATGTGCAAGCTAGGGATCGACCGGGTCCCTCTCTACATGCTGTTGATCC
194 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * *
20930537 TGCTGTCGCAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
259 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20930602 CCGACAAAACGAGCGGGCGGGCGGGCACTATGCCGGCCAGAGAAACGGGATGCGCAAGCCATGGA
324 CCGATAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * **
20930667 TCGATAGGGTGGTAGGTGGGTTTTGGCTCATCTTCATATTTCTGTGTGCCAATGCCATTTTTATG
389 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
20930732 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATT
454 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * ** *
20930797 TTCTATTTTTCACGATTTTGGAAACTTTTTACTGTTCGAGATTTTTTAAACTTTTTTCAGAATGA
519 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA
* * * * *
20930862 ATTTTGGCCCCAAACATGGTGGATGTGATCCTTGTATTTATGTTGGCATGCACAAAAAAATTCAG
584 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * *
20930927 CTAAAAACTCGAACTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTT
649 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
20930992 TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
714 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
*
20931057 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCG
779 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * *
20931122 CGCACCCCCTGGCCCCGCAATCGTCGGAACCCCAATGCCGCC-GATCAGGTT
844 CACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAG-TCAAGTT
** * * * *
20931173 CTCCGGTGATGCTCTGGTGATGGTGCCCC-AGCGAAGAAAAATACGGCACTAGCACATGCCCAAG
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAG
* **
20931237 CCCAGCATGTGCTACCGCAA-CC-C---TC-G---G-TC-----C---G---G---TCCG-AT-C
65 CCCAACATGTGCTGTCGCAACCCTCTGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* *
20931276 TTAGACTGGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCC
130 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
** * * *
20931340 GGCCAGAGGGGCGGGATGCGCAAGCCCGGGATCGATCGGGTCCCCCTCTGCGTGCTGGCGATCCG
195 GGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
** * * * ** *
20931405 GCTATCACAACCCTTGGTCCGGTGTGATCTCAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
260 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
20931470 AGATGAAACGAGCGGGCGGGCGGGTGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAG
325 CGAT-AAA--A-CGAGCGGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * **
20931535 CCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGATAATGCCAT
382 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
20931600 TTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACAG-GAAGTTTCATGGCAAGAC
447 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCATGGCAAGAC
* * * * * *
20931664 AACTCGTTTTCTATTTTTTACGATTTTCGAAACTCTTTGCGGTTTGAGAGTTTTTAAAATTTTTT
511 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * * * * * *
20931729 GGGAAGGGGTTTTGGCCCCAAACTTGGTAGGCATGATCCTTTTATTTTTTTTGGCAAGCACAAAA
576 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
20931794 AAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTC
641 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
20931859 AAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTAAG
706 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
20931924 TTCTCGAGGTTTGACGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCATCCATCGCACAT
771 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** *
20931989 CATGTTCGCACA-----C--CCCACCGATCGTCGGAACCCCAATGCCGCTGGTCATGTT
836 CATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTT
* ** * * *
20932041 CTCCGACGATGCTTCGATGACGGTGCCCCGACGAAAAAAAATACGGCACCAGCACATGCCCGAAC
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* *
20932106 CCAACATGTGCTGTCGCAACCCTCAG-T---T-TGGTC-----C----AAT---CT---TA----
66 CCAACATGTGCTGTCGCAACCCTCTGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * * *
20932147 -A-ACTGGTAATGAACTCCGTATGCCTAAGTCAAACCACAAAACAAGCGTGCAGGCGCTCAGCTG
131 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
20932210 GCCAGAGGGGTGGGATGTGCAA-ATCAGGGAT-GGCCGGGTCCCCTTCTGCGTGCTGCCGATCCT
196 GCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
*** ** * * * *
20932273 GCTATAGCAACCCTCGGTCTGGTTTGATTTTAGACTAGGAATGAACTCCGTATGCCTAATCTAAC
260 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
20932338 CGATGAAACGAGCGGGCAGGCAGGCACTACGCCGGTCAGA-AGGACGGGATGCGAAAGTCGTGGA
325 CGATAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGA-GACGGGATGCGCAAGCCGTGGA
* * *
20932402 TAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGCCATTTTTATG
389 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* *
20932467 GCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATT
454 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * **
20932532 TTTTATTTTTCACGATTTTTGAAACTTTTTACGATTTAAGATTTTTTTAAAATATTTTTT-GAAG
519 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGA-TTTTTTAAAAT-TTTTTTGGAAG
* *
20932596 GAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACA-AAAAACAATT
582 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATT
* * * *
20932660 CAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCCTTTGAAAATAGTGTCCCCATTTCAGACA
646 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
*
20932725 CTTTAATGGCTACT-GCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
711 CTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
20932789 CGAGGTTTGATGACGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATG
775 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
20932853 TGTGCACACCCCCCCGCCCCGCCCCCCGCCGCCCCCCGCCGACTTGATCGTTGGAACACCTATGC
840 TGCGCACA-------------CCCCCCG--G---CCC-CC--C--GATCGTCGGAACCCCAATGC
20932918 CGCCAGTCAAGTT
882 CGCCAGTCAAGTT
* * * *
20932931 CTCCGACGATGCTCCGGTGATGGTGCCCAG-TGAAGAAAAATACGGCACCAACACATGCCCGAGC
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * *
20932995 CCAGCATGTGCTG-C-TATAACC-C---TC-G---G-TC-T--A----G--T---CT--G-AT-C
66 CCAACATGTGCTGTCGCA-ACCCTCTGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
20933033 TTAGATTGTGAATGAACTGC-GTATGCCTAATTCAA-CCACGAAACGAGCTTACGGGCGCTTAGC
130 TTAGACTGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * ** * * * ** * *
20933096 CGGCCATATGGGTGGGATGCACAAACCAGGCATTGACCGGGTCTCTATTTGTGTGCTGTCGATCC
194 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * * **
20933161 TGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCCTAAACCTAAGCCAA
259 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * *
20933226 CCGACGAAACGAGCGGGTGGGCAGACGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCA
324 CCGATAAAACGAGCGGG-CGG--G-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * *
20933291 TGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCGGCATTCCAATCCCATTTT
385 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
20933356 TATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
450 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * *
20933421 CGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTC-AGGACTTTTTAAAATTTTTTCGG
515 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTTGG
* * *
20933485 AAGGATTTTTGGCCCCAAACTT--TCATACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
579 AAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
20933548 ATTCAGCTAAAAACTCAAACTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
643 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
20933613 ACACTTTAATGGCTA-TGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
708 ACACTTTAATGGCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * ** *
20933677 TCTAGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCTGAGTACCAGCACCCATTGCACATC
772 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * *
20933742 AAGTGCGCACACGGCCCCCGGCCCCCCAATCG-CTAGAACCCCAATGCCGTCGGTTAGGTT
837 ATGTGCGCACAC--CCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCAGTCAAGTT
* * * ** * *
20933802 CTCTGGCGATGCTCCGACGATGGTGCCTTGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGC
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * *
20933867 CCAGCATGTGCTGTCGCAACCCTC-GGTCTGGTGTGATCTTAGACTGGGAATGAACTCCGTATGC
66 CCAACATGTGCTGTCGCAACCCTCTGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
20933931 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGT--GAGCGCTCAGTC
130 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
20933994 GGCCAGAGGGGCGGGAAGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTTTCGATCTT
195 GGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * * *
20934059 GCTACTGCAACCCTCAG-CTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAA
260 GCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
20934123 TCGATGAAACGAGCGGGCGGGCGAGCGGGCACTACGCTGGCTACATAGACGGGATGCGTAAGCCG
324 CCGATAAAACGAGCGGGC--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
20934188 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG-CAATGACATTTT
385 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
20934252 TATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACT
450 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
20934317 CGTTTTCTATTTCTCATGATTTTTGAAACTTTTGGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
515 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGA
* * *
20934382 AGGAGTTTTGGCCCTAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAT
580 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
20934447 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCAGAC
645 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
20934512 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
710 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
20934577 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATG
775 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
20934642 TGCGCACACCCCCCTCGGACCCCCCGATCGCCAGAACCCTAATGCTGCC-G----G--
840 TGCGCACA-CCCCC-CGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTT
* * * *
20934693 -T---A-GGTTCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCAAGC
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
** * * * * ** * * *
20934753 CCAGTATTTGCTGTCGTAACACTC-GATCCGGTCCAATGTTGGATTGGGAATGAACTCCGTATGC
66 CCAACATGTGCTGTCGCAACCCTCTG-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * ** * * *
20934817 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAATGGAGCATACGGGCACTCAGCC
130 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *** * * **
20934882 GGCCAGAAGGGCGGGATGCGCATGCTGATAATCGGCCGTGTCCCCCTCTGCGTGCTACCGATCCT
195 GGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * *
20934947 GCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAC
260 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
20935012 CGATGAAACGAGTGGGCGGGTAGGTGGGCGGGCACTACGCCTGCCAGAGAGACGGGATGCGCAAG
325 CGATAAAACGA----GC--G--GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * *
20935077 CCATGAATCGCTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGATGCCAATACCAT
382 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
20935142 TTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
447 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** * * *
20935207 ACTCCTTTTTTATTTTTCACGATTTTCAAAACCTTTTGCGGTTCGAGATTTTTTGAAATTTTTTC
512 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT
* * *
20935272 GGAAGGAGTTTTGGCCCCAAACTTTGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
577 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
20935337 AATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTCA
642 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
20935402 GACACTTTAATGGATACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG-
707 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
20935466 T-TCGAGGTTTGATGATGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
772 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * *
20935530 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCAGTAAAGTT
837 ATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTT
* *
20935589 CTCCGACGATGCTCCGGCAATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGC
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * * *
20935654 CCAACATTTGCTGCCGCAACCCT-TGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
66 CCAACATGTGCTGTCGCAACCCTCT-GTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
20935718 TTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCC
130 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* ** * **
20935783 GGCCAGAGAGGCGGGATGCGCAAG-TCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCC
195 GGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
** * * * * * *
20935847 TGCTGCCGCAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATTCCTAAGACAA
259 TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
20935912 CCGATGAAACAAGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACAGGATGCGCAAGCCGTGGA
324 CCGATAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
20935977 TCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATATCTGCGTGCCAATGCCATTTTTATG
389 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
20936042 GCTTGTAAATTCATACAAT-GTCCCTTAAGCCTTCACGTGAAGTTTCA-GGCATAGATCGACTCG
454 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA-AGA-CGACTCG
* * *
20936105 TTTTCTA-TTTTCATGA-TTTTGAAAACTTTGTGGGGTTCGAGATTTTTTAAAA-TTTTTTGGAA
517 TTTTCTATTTTTCACGATTTTTG-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGG-A
* * * *
20936167 AGCG-GTTTTGG-CCCAAACTTTGGTAGAGGTGATCCCTTGGAATTTTGTTGGCATGCA-TAAAA
580 AG-GAGTTTTGGCCCCAAAC-TTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAAAA
* *
20936229 AATTCAACT-AAAACTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAAGTTGTCCCCATTT
642 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAG-TGTCCCCATTT
* *
20936293 CAGACACTTTAATGACTACTGCCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGA
705 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
20936357 GTTCTCGAGGTTTGAATGAGGGAT-TGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCACAC
770 GTTCTCGAGGTTTG-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * *
20936421 ATCATGTGCGCACACCCCCCGG-CCCCCGATCACCGGAACCCCAATGCCACCAGTAAAGTT
834 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTT
* ** * *
20936481 CTCCGACGATGCTCCGGCAATGGTGCCTTGATGAAGAAAAATACGGCACCAGCACATGCTC-AGC
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* *
20936545 CCAACATTTGCTGCCGCAA-CC-C--TT--G---G-TC-----C---G---G---TCCG-AT-CT
66 CCAACATGTGCTGTCGCAACCCTCTGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
*
20936584 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG
131 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * ** * **
20936649 GCCAGAGGGGCAGGATGCGCAA-ATCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCCT
196 GCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * * * * * *
20936713 GCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATTCCTAAGACAAC
260 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * ** * ** *
20936778 CGATGAAACAAGCGGGTGGACGGGCACTACGTTGACCAGAGAGATAGGATGCGCAAGCCATGGAT
325 CGATAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * * *
20936843 CGATTGGGTGGTAGATGGGTTTAGGCACATCTTCATATATCTACGTGCCAATGCCATTTTTATGG
390 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
20936908 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGTTT
455 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * *
20936973 TCTATTTTTCACGATTTTTGAAACTTTGTGGGGTTCGAGATTTTTTAAACTTTTTTTGGAAAGCG
520 TCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAG
* * * * *
20937038 TTTTGGCCCCAAACTTCGTAGAGGTGATCCTTGAATTTTTGTTGGCATGCATAAAAAAATTCAAC
585 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * *
20937103 TAAAAACTCGAAGTGAACAAGATTTTGTGA-AATTTGAAAAAAGTGTCCCCTTTTCAGACGCTTT
650 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
20937167 AATGACTACTGCCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
715 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
20937232 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACACCATGTGCGC
780 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* ** * *
20937297 ACACCCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCACCAGTAAAGTT
845 ACA-CCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTT
** * *
20937349 CTCCGGTGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGC
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* ** *
20937414 CCAACATTTATTGTCGCAACCCT-TAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
66 CCAACATGTGCTGTCGCAACCCTCT-GTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20937477 CTTAGACTGGGAATGAACTCTGTACGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGT
129 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
20937542 CAGCCAGAGGGGCGAGAAGTGCAAG-TCGGGGATCGACCAGGTCCTCTTCTGCGTGCTGTCGATC
194 CGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * * *
20937606 CTGTTGCCGTAACCCTTGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAATCCA
258 CTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20937671 ACCGATGAAATGAGCGGAAGGGCAGGCGGGCGGGCACTATGCTGGCTAGAGAGACGGGATGCGCA
323 ACCGAT-AAA--A-C-G-A--GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
20937736 AGCTGTGGATCGATAGGGTGGTTGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
380 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
20937801 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGA
445 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
20937866 CGACTCATTTTCTATTTTTCACGATTTTTGAAAC-TTTGGGGGTTCGAGATTTTTTAAACTTTTT
510 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * * * * *
20937930 TTGGAAAGCGTTTTGGCCCCAAACTTCGTAGAGGTGATCCTTGAATTTTTGTTGGCATGCATAAA
575 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
20937995 AAAATTCAACTAAAAACTCGAAGTGAACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCTTTT
640 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
20938060 CAGACGCTTTAATGACTACTGCCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
705 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
20938125 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACA
770 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * ** * *
20938190 CCATGTGCGCACACCCCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCACCAGTAAAGTT
835 TCATGTGCGCACA--CCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTT
** * *
20938253 CTCCGGTGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGC
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* ** *
20938318 CCAACATTTATTGTCGCAACCCT-TAG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
66 CCAACATGTGCTGTCGCAACCCTCT-GTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20938381 CTTAGACTGGGAATGAACTCTGTACGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGT
129 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
20938446 CAGCCAGAGGGGCGAGAAGTGCAAG-TCGGGGATCGACCAGGTCCTCTTCTGCGTGCTGTCGATC
194 CGGCCAGAGGGGCGGGATGCGCAAGCT-GGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * * *
20938510 CTGTTGCCGTAACCCTTGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAATCCA
258 CTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20938575 ACCGATGAAATGAGCGGAAGGGCAGGCGGGCGGGCACTATGCTGGCTAGAGAGACGGGATGCGCA
323 ACCGAT-AAA--A-C-G-A--GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
20938640 AGCTGTGGATCGATAGGGTGGTTGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
380 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
20938705 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAGGA
445 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * *
20938770 CGACTCTTTTTTTATTTTTCATG-TTTTTCAAAACTTTTTGGGGTTCGACATTTTTTAAAA-TTT
510 CGACTCGTTTTCTATTTTTCACGATTTTT-GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
* *
20938833 TTTCGAAGGCA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCCCA
574 TTTGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * *
20938897 AAAAATTTCAGCCAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCAT
638 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
20938962 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
703 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * *
20939027 GAGTTCTTGAGGTTTGATGAGGGATAGGGAGCCAATATACGGGCCAAGTACCGGCACCCATTGCA
768 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * ** * * * * *
20939092 CATCATTTACGCACACCCCCCAGCCTCCCCGATCGTTAGAACTCCAACGCCGTCGGTCAGGTT
833 CATCATGTGCGCACACCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTT
* ** * * * * **
20939155 GTCCGGTGATGCTGCGGTGATGGTACCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGC
1 CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * * *
20939220 CCAGCATGTGCTGTCGCAACCCTCCGTCCAGTCTGATCTAAGACTGGGAATGAACTCCGTATGCT
66 CCAACATGTGCTGTCGCAACCCTCTGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * * *
20939285 TAGACTCGGAATGGACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTGCTCAGCCG
131 TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * *
20939350 GCCAGAGGGGCGGGATGCGCAAGCCT-AGGATCGGCTGGGTCCCCTTCTGTGTGCTG-CTGATCT
196 GCCAGAGGGGCGGGATGCGCAAG-CTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTC-GATCC
* * * * *
20939413 TGCTGTCGTAACCCTCGGT-TCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTTAGCC
259 TGCTGCCGCAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
20939476 TTCACATGAA
Statistics
Matches: 8924, Mismatches: 922, Indels: 496
0.86 0.09 0.05
Matches are distributed among these distances:
859 2 0.00
860 244 0.03
861 198 0.02
862 5 0.00
864 59 0.01
865 464 0.05
866 116 0.01
867 185 0.02
868 368 0.04
869 62 0.01
870 7 0.00
871 55 0.01
872 46 0.01
873 11 0.00
874 2 0.00
875 459 0.05
876 8 0.00
878 3 0.00
879 5 0.00
881 9 0.00
882 3 0.00
883 1 0.00
884 9 0.00
885 7 0.00
886 146 0.02
887 5 0.00
888 181 0.02
889 192 0.02
890 67 0.01
891 317 0.04
892 404 0.05
893 703 0.08
894 166 0.02
895 400 0.04
896 1265 0.14
897 446 0.05
898 62 0.01
899 18 0.00
900 15 0.00
901 285 0.03
902 436 0.05
903 364 0.04
904 1100 0.12
905 24 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
CTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
CCAACATGTGCTGTCGCAACCCTCTGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GATAAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAAGTT
Found at i:20933940 original size:26 final size:26
Alignment explanation
Indices: 20933904--20933956 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20933894 CTGGTGTGAT
20933904 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20933930 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20933956 C
1 C
20933957 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20938558 original size:904 final size:899
Alignment explanation
Indices: 20932143--20939475 Score: 8741
Period size: 904 Copynumber: 8.2 Consensus size: 899
20932133 TTGGTCCAAT
* * * * *
20932143 CTTAAACTGGTAATGAACTCCGTATGCCTAAGTCAAACCACAAAACAAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
20932208 TGGCCAGAGGGGTGGGATGTGCAAATCAGGGAT-GGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
*** * ** * * * *
20932272 TGCTATAGCAACCCTCGGTCTGGTTTGATTTTAGACTAGGAATGAACTCCGTATGCCTAATCTAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
20932337 CCGATGAAACGAGC--GGGCA----GGCAGGCACTACGCCGGTCAGA-AGGACGGGATGCGAAAG
196 CCGATGAAACGAGCAAGGGCAGGCGGGCGGGCACTACGCTGGCCAGAGA-GACGGGATGCGCAAG
* * * * *
20932395 TCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
20932460 TTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** * **
20932525 ACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTACGATTTAAGATTTTTTTAAAATATTTT
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTGGCGGTTCGAGA-TTTTTT-AAAT-TTTT
* *
20932590 TT-GAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACA-AAA
452 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAA
* * * *
20932653 AACAATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCCTTTGAAAATAGTGTCCCCATT
517 AA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
20932718 TCAGACACTTTAATGGCTACTGCTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
581 TCAGACACTTTAATGACTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
20932783 AGTTCTCGAGGTTTGATGACGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
20932847 ATCATGTGTGCACACCCCCCCGCCCCGCCCCCCGCCGCCCCCCGCCGACTTGATCGTTGGAACAC
711 ATCATGTGCGCACA--------------CCCCC-CCG-CCCCC-CCGA--TCA-C--CGGAACCC
* * * * ** * *
20932912 CTATGCCGCCAGTCAAGTTCTCCGACGATGCTCCGGTGATGGTGCCCAG-TGAAGAAAAATACGG
754 CAATGCCACCAGTAAAGTTCTCCGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATACGG
* * * **
20932976 CACCAACACATGCCCGAGCCCAGCATGTGCTG-CTATAACCC---TC--G---G-TC-T--A---
819 CACCAGCACATGCCCGAGCCCAACATTTGCTGTC-GCAACCCTTGTCTGGTCCGATCTTAGACTG
20933025 -G--T---CT--G-AT-
883 GGAATGAACTCCGTATG
* * * * * * *
20933032 CTTAGATTGTGAATGAACTGCGTATGCCTAATTC-AACCACGAAACGAGCTTACGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * * * * * * *
20933096 CGGCCATATGGGTGGGATGCACAAACCAGGCATTGACCGGGT-CTCTATTTGTGTGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCT-TCTGCGTGCTGCCGATC
* * * * **
20933160 CTGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCCTAAACCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * *
20933225 ACCGACGAAACGAGC--GGGTGGGCAGACGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAG
195 ACCGATGAAACGAGCAAGGGCAGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
* * * * * *
20933288 CCATGGATCGATAGGGTGGTAGGTGGGCTTAGGCACATCTTCATATTTCGGCATTCCAATCCCAT
260 CCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
20933353 TTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** * *
20933418 ACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTC-AGGACTTTTTAAAATTTTTT
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTGGCGGTTCGA-GA-TTTTTTAAATTTTTT
* * * * *
20933482 CGGAAGGATTTTTGGCCCCAAACTT--TCATACATGATCCTTGTATTTTTGTTGGCATGCACAAA
453 TGGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAA
* * *
20933545 AAAATTCAGCTAAAAACTCAAACTCTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
20933610 TAGACACTTTAATGGCTA-TGGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
582 CAGACACTTTAATGACTACT-GCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * ** *
20933674 AGTTCTAGAGGTTTGATGAGGGACAGGGGGCCAATATAAGGGCTGAGTACCAGCACCCATTGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * ** ** * * *
20933739 ATCAAGTGCGCACACGGCCCCCGGCCCCCCAATCGCTAGAACCCCAATGCCGTCGGTTAGGTTCT
711 ATCATGTGCGCACAC-CCCCCCGCCCCCCCGATCACCGGAACCCCAATGCCACCAGTAAAGTTCT
* * * ** * *
20933804 CTGGCGATGCTCCGACGATGGTGCCTTGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCC
775 CCGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * **
20933869 AGCATGTGCTGTCGCAACCCTCGGTCTGGTGTGATCTTAGACTGGGAATGAACTCCGTATG
840 AACATTTGCTGTCGCAACCCT-TGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20933930 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGT--GAGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
20933993 CGGCCAGAGGGGCGGGAAGCGCAAGCCGGGGATCGGCCGAGTCCCCCTCTGCGTGCTTTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * * *
20934058 TGCTACTGCAACCCTCAG-CTCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTC-CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
20934122 ATCGATGAAACGAGC--GGGCGGGCGAGCGGGCACTACGCTGGCTACATAGACGGGATGCGTAAG
195 ACCGATGAAACGAGCAAGGGCAGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
* * *
20934185 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG-CAATGACAT
260 CCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
20934249 TTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACA
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
20934314 ACTCGTTTTCTATTTCTCATGATTTTTGAAACTTTTGGCGGTTCGGGATTTTTTAAAATTTTTTC
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTGGCGGTTCGAGATTTTTT-AAATTTTTTT
* *
20934379 GGAAGGAGTTTTGGCCCTAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
*
20934444 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
20934509 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
584 GACACTTTAATGACTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
20934574 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * ** * *
20934639 ATGTGCGCACACCCCCCTCGGACCCCCCGATCGCCAGAACCCTAATGCTGCCGGT-AGGTTCT-C
714 ATGTGCGCACACCCCCC-C-GCCCCCCCGATCACCGGAACCCCAATGCCACCAGTAAAGTTCTCC
* * *
20934702 --CG--G---C-G--ATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAG
777 GGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAA
* * * * * * * * *
20934757 TATTTGCTGTCGTAACACTCGATCCGGTCCAATGTTGGATTGGGAATGAACTCCGTATG
842 CATTTGCTGTCGCAACCCTTG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
20934816 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAATGGAGCATACGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGC
* * *** * * *
20934881 CGGCCAGAAGGGCGGGATGCGCATG-CTGATAATCGGCCGTGTCCCCCTCTGCGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATC
* * * *
20934945 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*** * *
20935010 ACCGATGAAACGAGTGGGCGGGTAGGTGGGCGGGCACTACGCCT-GCCAGAGAGACGGGATGCGC
195 ACCGATGAAACGA--GCAAGGGCAGGCGGGCGGGCACTACG-CTGGCCAGAGAGACGGGATGCGC
* * * * * *
20935074 AAGCCATGAATCGCTAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGGATGCCAATAC
257 AAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
20935139 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * **
20935204 ACGACTCCTTTTTTATTTTTCACGATTTTCAAAACCTTTT-GCGGTTCGAGATTTTTTGAAATTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTGGCGGTTCGAGATTTTTT-AAATTT
* * * * *
20935268 TTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACA
450 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATA
* *
20935333 AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCAT
515 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
20935398 TTCAGACACTTTAATGGA-TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
580 TTCAGACACTTTAAT-GACTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
20935462 TGAG-T-TCGAGGTTTGATGATGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
20935525 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCAGTAAAGTTC
709 ACATCATGTGCGCACACCCCCCCGCCCCCCCGATCACCGGAACCCCAATGCCACCAGTAAAGTTC
* *
20935590 TCCGACGATGCTCCGGCAATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
774 TCCGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * *
20935655 CAACATTTGCTGCCGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
839 CAACATTTGCTGTCGCAACCCTT-GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20935717 CTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
20935782 CGGCCAGAGAGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
** * * * * *
20935847 TGCTGCCGCAACCCTCAATCCGATCTGATCTTAGACTGGGAATGAACTCTGTATTCCTAAGACAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
20935912 CCGATG-AA--A-CAA--GCGGGCGGGCGGGCACTACG-TCGACCAGAGAGACAGGATGCGCAAG
196 CCGATGAAACGAGCAAGGGCAGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAG
* *
20935970 CCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATATCTGCGTGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
20936035 TTTTATGGCTTGTAAATTCATACAAT-GTCCCTTAAGCCTTCACGTGAAGTTTCA-GGCATAGAT
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA-AGA-
* *
20936098 CGACTCGTTTTCTA-TTTTCATGA-TTTTGAAAACTTTGTGG-GGTTCGAGATTTTTTAAAATTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTT-TGGCGGTTCGAGATTTTTTAAATTTT
* * *
20936160 TTTGGAAAGCG-GTTTTGG-CCCAAACTTTGGTAGAGGTGATCCCTTGGAATTTTGTTGGCATGC
451 TTTGG-AAG-GAGTTTTGGCCCCAAAC-TTGGTAGACGTGAT-CCTTGTATTTTTGTTGGCATGC
* *
20936223 AT-AAAAAATTCAACT-AAAACTCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAAAGTTGTC
512 ATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAG-TGTC
20936286 CCCATTTCAGACACTTTAATGACTACTGCCAGCAAACCTGT-AAATCTCAAATGCTCTTTAAGGG
575 CCCATTTCAGACACTTTAATGACTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
20936350 GGTGTGAGTTCTCGAGGTTTGAATGAGGGAT-TGGGGCCAATATAAGGGTCAAGTACCAGCACCC
640 GGTGTGAGTTCTCGAGGTTTG-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* *
20936414 ATCACACATCATGTGCGCACA-CCCCCCG-GCCCCCGATCACCGGAACCCCAATGCCACCAGTAA
704 ATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATCACCGGAACCCCAATGCCACCAGTAA
* ** * *
20936477 AGTTCTCCGACGATGCTCCGGCAATGGTGCCTTGATGAAGAAAAATACGGCACCAGCACATGCTC
769 AGTTCTCCGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCC
*
20936542 -AGCCCAACATTTGCTGCCGCAACCC---T-T-G---G-TC-----C---G---G---TCCG-AT
834 GAGCCCAACATTTGCTGTCGCAACCCTTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTAT
20936582 -
899 G
* * *
20936582 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
20936647 CGGCCAGAGGGGCAGGATGCGCAAATCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * * * * *
20936712 TGCTACCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCTGTATTCCTAAGACAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * **
20936777 CCGATG-AA--A-CAA--GCGGGTGGACGGGCACTACGTTGACCAGAGAGATAGGATGCGCAAGC
196 CCGATGAAACGAGCAAGGGCAGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
20936836 CATGGATCGATTGGGTGGTAGATGGGTTTAGGCACATCTTCATATATCTACGTGCCAATGCCATT
261 CGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
20936901 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGA
326 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
20936966 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTGTGG-GGTTCGAGATTTTTTAAACTTTTTTT
391 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTT-TGGCGGTTCGAGATTTTTTAAA-TTTTTTT
* * * * *
20937030 GGAAAGCGTTTTGGCCCCAAACTTCGTAGAGGTGATCCTTGAATTTTTGTTGGCATGCATAAAAA
454 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
* * * *
20937095 AATTCAACTAAAAACTCGAAGTGAACAAGATTTTGTGA-AATTTGAAAAAAGTGTCCCCTTTTCA
519 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
20937159 GACGCTTTAATGACTACTGCCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
584 GACACTTTAATGACTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
20937224 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACACC
649 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
20937289 ATGTGCGCACACCCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCACCAGTAAAGTTCTCCG
714 ATGTGCGCACACCCCCCCG-CCCCCCCGATCACCGGAACCCCAATGCCACCAGTAAAGTTCTCCG
* *
20937354 GTGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAAC
778 GCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAAC
**
20937419 ATTTATTGTCGCAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
843 ATTTGCTGTCGCAACCCTT-GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20937477 CTTAGACTGGGAATGAACTCTGTACGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
20937542 CAGCCAGAGGGGCGAGAAGTGCAAGTCGGGGATCGACCAGGTCCTCTTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * * ** * * *
20937607 TGTTGCCGTAACCCTTGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAATCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
20937672 CCGATGAAATGAGCGGAAGGGCAGGCGGGCGGGCACTATGCTGGCTAGAGAGACGGGATGCGCAA
196 CCGATGAAACGAGC--AAGGGCAGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* *
20937737 GCTGTGGATCGATAGGGTGGTTGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
20937802 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
20937867 GACTCATTTTCTATTTTTCACGATTTTTGAAAC-TTTGGGGGTTCGAGATTTTTTAAACTTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTGGCGGTTCGAGATTTTTTAAA-TTTTTT
* * * * *
20937931 TGGAAAGCGTTTTGGCCCCAAACTTCGTAGAGGTGATCCTTGAATTTTTGTTGGCATGCATAAAA
453 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
* * * *
20937996 AAATTCAACTAAAAACTCGAAGTGAACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCTTTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
20938061 AGACGCTTTAATGACTACTGCCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGACTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
20938126 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACAC
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
20938191 CATGTGCGCACACCCCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCACCAGTAAAGTTCTC
713 CATGTGCGCACA-CCCCCCCG-CCCCCCCGATCACCGGAACCCCAATGCCACCAGTAAAGTTCTC
* *
20938256 CGGTGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCA
776 CGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
**
20938321 ACATTTATTGTCGCAACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
841 ACATTTGCTGTCGCAACCCTT-GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20938381 CTTAGACTGGGAATGAACTCTGTACGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
20938446 CAGCCAGAGGGGCGAGAAGTGCAAGTCGGGGATCGACCAGGTCCTCTTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * * ** * * *
20938511 TGTTGCCGTAACCCTTGGTTTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAATCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
20938576 CCGATGAAATGAGCGGAAGGGCAGGCGGGCGGGCACTATGCTGGCTAGAGAGACGGGATGCGCAA
196 CCGATGAAACGAGC--AAGGGCAGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
* *
20938641 GCTGTGGATCGATAGGGTGGTTGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
20938706 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACGTGAAGTTTCATGGCAGGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
20938771 GACTCTTTTTTTATTTTTCATG-TTTTTCAAAACTTTTTGG-GGTTCGACATTTTTTAAAATTTT
389 GACTCGTTTTCTATTTTTCACGATTTTT-GAAAC-TTTTGGCGGTTCGAGATTTTTTAAATTTTT
* **
20938834 TTCGAAGGCA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCCCAA
452 TTGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAA
* * * *
20938898 AAAATTTCAGCCAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
20938963 TCAGACACTTTAATGGCTACTAG-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
581 TCAGACACTTTAATGACTACT-GCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * *
20939027 GAGTTCTTGAGGTTTGATGAGGGATAGGGAGCCAATATACGGGCCAAGTACCGGCACCCATTGCA
645 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * **** * * ** * * * *
20939092 CATCATTTACGCACACCCCCCAGCCTCCCCGATCGTTAGAACTCCAACGCCGTCGGTCAGGTTGT
710 CATCATGTGCGCACACCCCCCCGCCCCCCCGATCACCGGAACCCCAATGCCACCAGTAAAGTTCT
* * ** * * **
20939157 CCGGTGATGCTGCGGTGATGGTACCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
775 CCGGCGATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * ** * *
20939222 AGCATGTGCTGTCGCAACCCTCCGTCCAGTCTGATCTAAGACTGGGAATGAACTCCGTATG
840 AACATTTGCTGTCGCAACCCT-TGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
20939283 CTTAGACTCGGAATGGACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * *
20939348 CGGCCAGAGGGGCGGGATGCGCAAGCCTAGGATCGGCTGGGTCCCCTTCTGTGTGCTGCTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
* * * * * *
20939413 TGCTGTCGTAACCCTCGGTTCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCCTTAGCC
131 TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
20939476 TTCACATGAA
Statistics
Matches: 5711, Mismatches: 578, Indels: 297
0.87 0.09 0.05
Matches are distributed among these distances:
864 51 0.01
865 463 0.08
866 117 0.02
867 56 0.01
868 92 0.02
869 22 0.00
870 1 0.00
871 44 0.01
872 48 0.01
873 4 0.00
874 2 0.00
875 1 0.00
876 6 0.00
877 4 0.00
878 6 0.00
879 5 0.00
881 3 0.00
882 3 0.00
883 1 0.00
884 1 0.00
885 2 0.00
886 136 0.02
887 3 0.00
888 180 0.03
889 149 0.03
890 10 0.00
891 336 0.06
892 393 0.07
893 708 0.12
894 73 0.01
895 183 0.03
896 147 0.03
897 446 0.08
898 66 0.01
899 16 0.00
900 2 0.00
901 271 0.05
902 433 0.08
903 370 0.06
904 834 0.15
905 18 0.00
906 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCTTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAACGAGCAAGGGCAGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTGGCGGTTCGAGATTTTTTAAATTTTTTTGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGACTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCGCCCCCCCGATCACCGGAACCCCAATGCCACCAGTAAAGTTCTCCGGCG
ATGCTCCGGCAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATT
TGCTGTCGCAACCCTTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20939296 original size:26 final size:26
Alignment explanation
Indices: 20939260--20939309 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
20939250 GTCTGATCTA
*
20939260 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTCGGAATGAACTCCGTATGCTT
*
20939286 AGACTCGGAATGGACTCCGTATGC
1 AGACTCGGAATGAACTCCGTATGC
20939310 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTCGGAATGAACTCCGTATGCTT
Found at i:20940918 original size:26 final size:26
Alignment explanation
Indices: 20940882--20940934 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20940872 CCAGTTCGAT
20940882 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20940908 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20940934 C
1 C
20940935 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20941728 original size:903 final size:896
Alignment explanation
Indices: 20939468--20945362 Score: 7523
Period size: 893 Copynumber: 6.6 Consensus size: 896
20939458 ACTCCGTATG
* * * *
20939468 CCTT-AGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTACTTTTCACAATTTTTGAA
1 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* ** * *
20939532 ACTTTTTGTGGTTTCGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGAC
66 ACTTTTTGCGG-TTCGAGATTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
20939597 GTGATCCTTGTATTTTTGTTGGCTTGCAC-AAACAAATTCAGCTAAAAACTCTAAGTGTACAAGA
130 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAC-AATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
20939661 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCA
194 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
20939726 GTAAAATCTGAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGCCA
259 GTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
20939791 ATATATGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCACACCCCCCCGACCCCCCCGAT
324 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG-GCCCCCCGAT
* * * * * *
20939856 CGTCAGAACCCCATTGCCGTCGGTCAGGTTCTCCGGCGA---T--GG--CG-GCCGACGAAGAAA
387 CGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGATGGTGCCCAGGAAGAAA
* * * *
20939913 AATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCA--TCTGATC
452 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTTC-GATC
* * * ** *
20939976 TAAGACTGGGAATGACCTCCATATGCTTAGACTCAGAATGGACTCCGTATGCCTAAGTCAACCCA
516 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * * *
20940041 CAAAACAAGCATGCGGGCGCTCAGTCGGCCAGAGGGGC-GAGATGCGTAAGCCTGGGATCGGTTG
581 CGAAACGAGCGTTCGGGCGCTCAGCCGACCAGAGGGGCAG-GATGCGCAAGCCGGGGATCGGGTG
* ** * ** *
20940105 GGTCCCCCTCTGTGTGCTGTTGATCTTGCTG-TCACAACCCTCAGTCCGGTTCAATCTTAGACTG
645 GGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCT-ACAACCCTCAGTCTGGTTTGATCTTAGACTA
* ** * *
20940169 GGAATGAACTCCATATGCCTAAGCCAATTGACGAAACGAGCGAGCAGGAGGGTGGGCGGGCAGGC
709 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGCGGGCGGGCAGGC
* * ** *
20940234 ACTACGTCAGCCAGAGAGATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAGG
770 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
**
20940299 CACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
835 CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
**
20940361 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAA
1 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
20940426 ACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGA
66 ACTTTTTGCGGTTCGAGA--TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
20940491 -GATGATCCTTGTATTTTTGTTGGCTTGCAC-AAACAAATTCAGCTAAAAACTTGAAGTGTACAA
129 CG-TGATCCTTGTATTTTTGTTGGCATGCACAAAAC-AATTCAGCTAAAAACTCGAAGTGTACAA
* * *
20940554 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGGAAAC
192 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * * *
20940619 CTGTAAAATATCAAATGCTCCTTAAAGGTGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCC
257 CTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * * *
20940684 CAATATAACGGCCAAGTACCACCACCCATCGCACATCATGTGCGCACACCCCTCGGCCACCTCAA
322 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-CCCCGA
* *
20940749 TCGTCGGAACCCCAATGCCGTCGGTAAGGTTCTCCGGCGATGCTCCGGCGATGGTGACCCAGTGA
386 TCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC-G-GATGGTG-CCCAG-GA
* * *
20940814 AGAACAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTACTGCAACCCTCGGTCCAGTTC
447 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTTC
*
20940879 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAA
512 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * ***
20940944 CCCATGAAACGAGCGTTCGGGTGCTCAGCCTATCAGAGGGGCGGGATGCACAAATTGGGGATCGG
577 CCCACGAAACGAGCGTTCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGG
* *
20941009 GTGGGTCCCCCTCTGTGTGCTGCCGATCTTGCTGCTGCAACCCTCAGTCTGGTTTGATCTTAGAC
642 GTGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTACAACCCTCAGTCTGGTTTGATCTTAGAC
*
20941074 TAGGAATGAACTCCGTATGTCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCAC
707 TAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCAC
* *
20941139 TACGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
772 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* * * * *
20941204 CAACTTCATATTTCTGCATGCCAATGTCGTTTTTATGGCTTGTAAATTCATACAATGGTT
837 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
20941264 CTTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTGAA
1 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* *
20941329 ACTTTTTGCGGTTCGGGATTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTATACG
66 ACTTTTTGCGGTTCGAGATTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
20941394 TGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATT
131 TGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * *
20941459 TTGGGCCCTATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGGAAACCTG
196 TTGTGACC-ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
20941524 TAAAATATCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAA
260 TAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
20941589 TATAATGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCACCTCGATC
325 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC-CCCCGATC
* * * * **
20941654 ACCAGAACCCCATTGCCG-CTGGTAAGGTTCTCCAACGATGCTCCAGGGATGGTGCCACAGGGAA
388 GCCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGATGCTCC--GGATGGTGCC-CA-GGAA
* * **
20941718 GAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTCGATCTGGTTCG
448 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTTCG
* *
20941783 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
513 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
20941848 CCATGAAACGAGCGTTCGGGTGCTCAGCCTACCAGAGGGGCGGGATGCACAAGCCGGGGATCGGG
578 CCACGAAACGAGCGTTCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGG
* *
20941913 T-GG-CCCCCTCTACGTGCTGCCGATCTTGCTGCTGCAACCCTCAGTCTGGTTTGATCTTAGACT
643 TGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTACAACCCTCAGTCTGGTTTGATCTTAGACT
* * *
20941976 GGGAATGAACTCCGTATGTCTAAGCCAACCGACG-AA--A-----CGTGCGGGCGGGCAGGCACT
708 AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACT
* *
20942033 ACGCCGGCTAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
773 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* ** *
20942098 ATCTTCATATTTCTGCCTGCCAATGCTGTTTTTCTGGCTTGTAAATTCATACAATGGTC
838 ATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
20942157 CTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGAA
1 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
*
20942222 ACTTTTTGCGGTTCGAGATTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
66 ACTTTTTGCGGTTCGAGATTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
20942287 TGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
131 TGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * * * * *
20942352 TTGTGACCATTTAAAAAAAATTATCCCTATTTCAGACACTTTAACGACTACTGGCAGCAAACCAG
196 TTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
20942417 TAAAATCTCAAATG-TCCTTTAAGGGGGTGGGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTA
260 TAAAATCTCAAATGCTCC-TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
20942481 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGCGCACACCCCCCCGGCCCCCACGAT
324 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC-CGAT
* *
20942546 CGCC-GAATCCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTCC-GA-------C--GAAGAA
387 CGCCGGAA-CCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGATGGTGCCCAGGAAGAA
* * * ** * * *
20942600 AAATGCGACACCAGCACATGCTCGGGCCTTGTATGTGCTGCCTGCAACCCTCGATCC-GATCCGA
451 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CTGCAACCCTCGGTCCAG-TTCGA
* ** * *
20942664 TCTTAGACTAGGAATGAACTCCAAATGCTTAGATTGGGAATGAACTCCGTACGCCTAAGTCAACC
514 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * **
20942729 CACGAAACGAACATGT-GGGCGCTCAGCCGGCCAGCGGGACAGGATGCGCAAACCGGGGATCGAC
579 CACGAAACGAGCGT-TCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGG
* * * * *
20942793 CGAGTCCCCCTCTACGTGCT----A---T-C-G---CAACCCTC-GATCGGGTCTGATCTTAGAC
643 TGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTACAACCCTCAG-TCTGGTTTGATCTTAGAC
* * ** * *
20942845 TAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGATGGGCGGGCGGGCTC
707 TAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCAC
* * * ** *
20942910 TATGCCGACCAGAGAGGCGGGAT-CTGCAAGCCGTGGATCGATATTGTGGTAGGTGGGTTTTGGC
772 TACGCCGGCCAGAGAGACGGGATGC-GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
20942974 ACGTCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA-AATGGTC
836 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* **
20943034 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAATAATTTTTGAA
1 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * * *
20943099 ACATTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGAAGTTTTGGCCCCAATCTTGGTAGA
66 ACTTTTTGCGGTTCGAGA--TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
20943164 TGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCTGCTAAAAACTCAAAATGTACAAGA
129 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
20943229 CTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
194 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * * *
20943294 GTAAAATCTGAAAAGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGGGCCA
259 GTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*** * *
20943359 ATATAAGTTTCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCGGCCCCTCGATCG
324 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG
* * * *
20943424 TCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAGA
389 CCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG--GATGGTG-CCCAG-GAAGA
* * * *
20943489 AAAATGTGGCACCAGCACATGCCCGAACCCAACATGTGCTGCCGCAACCCTCGGTCCAG-TCTGA
450 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTTC-GA
* * *
20943553 TCTTATACTGGGAATGAACTCCGTATGCTTAGTCTGGGAATGAACTCCATATGCCTAAGTCAACC
514 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * ***
20943618 CACGAAACGAGCGTACGGGAGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACC
579 CACGAAACGAGCGTTCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGGT
** * * * * * * *
20943683 GGGTCCTTCTCTGCGTGCTGTCGATCCTGTTACCACAACCCTCAGTCTGGTATGATCTTAGACTG
644 GGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTACAACCCTCAGTCTGGTTTGATCTTAGACTA
* *
20943748 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA----GTGGGCGGGC--G--GGCACTA
709 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTA
* * *
20943805 CGCCGGCCATAGAGACGGGATGTGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
774 CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * * *
20943870 TCTTCATATTTCTGCATCCCAATGCGATTTTTATGGCTTGTAAATTCATACAGTGGTC
839 TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
20943928 CCTTAAGTCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTATTCTATTTTTCACGATTTTTGAA
1 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
20943993 ACTTTTTGCGGTTCAAGATTTTTGAAAATTTTTTTGGAAGGATTTTTGACCCCAAACTTGGTAGA
66 ACTTTTTGCGGTTCGAGA-TTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
20944058 CGTGATCCTTGTATTTTTGTTGGCATGGGA-AAAA-AATTTAGCAAAAAACTCGAAGTGTACAAG
129 CGTGATCCTTGTATTTTTGTTGGCAT-GCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
* ** * * **
20944121 ATTTTGTGACAATTCAAAAAAAGTGCCCCCATTTCAAACACTTTAATAACTACTGGCAGCAAACC
193 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* **
20944186 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAAGATA-GGGGCC
258 TGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
20944250 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
323 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
* *
20944315 ACCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCAGCGAAG
388 GCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG--GATGGTG-CCCAG-GAAG
* * *
20944380 AAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GATCCG
449 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAG-TTCG
* * * * *
20944444 ATCTTAGACTAGGAATGAGCTCCGTATGCTTAGAATGGGAATGAACTCCATATGACTAAGTCAAC
513 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
20944509 CCACGAAACGAGCGTACGGGCGCTCAATCGGA-TAGAGGGGCAGGATGTGCAAGCCGGGGAT-TG
578 CCACGAAACGAGCGTTCGGGCGCTC-AGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGG
* * * ** * * * * **
20944572 GTCGGGTGCCCCTCAGCGTGCTGCCAATCCCGTTGCCACAACCCTC-GATCCGATCCGATCTTAG
642 GT-GGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTACAACCCTCAG-TCTGGTTTGATCTTAG
* * *
20944636 A-TCAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGCAGGC--G-A-G
705 ACT-AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGG
20944696 CACTACGCCGGCCAGAGAGA-GGGCATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG-TTA
769 CACTACGCCGGCCAGAGAGACGGG-ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
**
20944759 GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
833 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* **
20944823 CCTTAAGCCTGCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
1 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* ** * *
20944888 ACTTTTTGCGGTTCGTGATTTTTTAATCTTTTTCGAAAGGAGTTTT-GCTCCCAAACCTGGTAGA
66 ACTTTTTGCGGTTCGAGATTTTAAAAT-TTTTTCGGAAGGAGTTTTGGC-CCCAAACTTGGTAGA
*
20944952 TGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAGTTCAGCTAAAAACTCGAAGTGTACAAG
129 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAA-TTCAGCTAAAAACTCGAAGTGTACAAG
* * * *
20945016 ATTTTATGACCATTTGAAAAAAGTGTCCCTAATTCAGACACTTTAATTGCTACTGGCAGCAAACC
193 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
20945081 TGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
258 TGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
20945146 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GCCCCCCGATC
323 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
* * * *
20945210 GCTGGAACCCTAATGCCGTCGGTC-GGTTCTCTGGCGATGCTCCGATGATGGTGCCCCGACGAAG
388 GCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG--GATGGTG-CCC-AGGAAG
* * *
20945274 AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-ATCGCAACCCTCAGTCCAG-TCT
449 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCAGTTC-
*
20945337 GATCTTAGACTTGGAATGAACTCCGT
512 GATCTTAGACTGGGAATGAACTCCGT
20945363 TGCCTAAGCC
Statistics
Matches: 4417, Mismatches: 477, Indels: 215
0.86 0.09 0.04
Matches are distributed among these distances:
869 1 0.00
870 56 0.01
871 2 0.00
873 2 0.00
874 1 0.00
875 1 0.00
876 40 0.01
877 98 0.02
878 257 0.06
879 160 0.04
880 126 0.03
881 2 0.00
882 16 0.00
887 1 0.00
888 1 0.00
889 145 0.03
890 40 0.01
891 3 0.00
892 387 0.09
893 785 0.18
894 432 0.10
895 573 0.13
896 123 0.03
897 8 0.00
898 1 0.00
900 3 0.00
901 261 0.06
902 170 0.04
903 455 0.10
904 4 0.00
905 4 0.00
906 56 0.01
907 199 0.05
908 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTGCGGTTCGAGATTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCC
GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGATGGTGCCCAGGAAGAAAAATG
CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTTCGATCTTAGA
CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTTCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGGTGGGTCCC
CCTCTGCGTGCTGCCGATCTTGCTGCTACAACCCTCAGTCTGGTTTGATCTTAGACTAGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
Found at i:20941814 original size:26 final size:26
Alignment explanation
Indices: 20941785--20941837 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20941775 CTGGTTCGAT
20941785 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20941811 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
20941837 C
1 C
20941838 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:20944475 original size:26 final size:26
Alignment explanation
Indices: 20944446--20944497 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20944436 CCGATCCGAT
* * *
20944446 CTTAGACTAGGAATGAGCTCCGTATG
1 CTTAGAATAGGAATGAACTCCATATG
*
20944472 CTTAGAATGGGAATGAACTCCATATG
1 CTTAGAATAGGAATGAACTCCATATG
20944498 ACTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCATATG
Found at i:20947566 original size:694 final size:693
Alignment explanation
Indices: 20946009--20948057 Score: 2833
Period size: 684 Copynumber: 2.9 Consensus size: 693
20945999 CGCTAGCCAG
* *
20946009 AGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
20946074 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
66 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * * *
20946139 AAGTTGCATGGCCAGACAACTCGTTTTCTATTTTTCATGATTTTGAAACTTTTTGTGGTTCAAGA
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAACTTTTTGAGGTTCAGGA
* * *
20946204 TTTTTTAAAATTTTTTCGGAAGGCATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
196 TTTTTTAAAATTTTTTTGGATGG-ATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTG
* * * * *
20946269 TTGGCGTGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTAAAAA
260 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAA
*
20946334 AAGTGTCCCCATTTCAGACACTTTAATGGCTACT-AGCAGCAAACCTGTAAAATCTCATATGCTC
325 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGA-CAGCAAACCTGTAAAATCTCAAATGCTC
*
20946398 TTTAAGGGGGTGTGAGTTCTC-ATGGTTTGATGAGGGATA-GGGGCCAATATACGGGCCAAGTAC
389 TTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * * * *
20946461 CAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGGAACCCTAGTGTCG
453 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCG
* * * ** *
20946526 CCGGTCGTTCTCCGGTGATGCTCCGGCAATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCATA
518 CC-G--G---TCAGGT--T-CCCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * * *
20946591 GGCTCGAGCCCATCATGTGCTG-CAGTAACCCTCGGTCCGGTCCGAGCTTAGACTGGGAATGAAC
574 TGCCCGAGCCCAACATGTGCTGCCA-TAACCCTCGGTCCGGTCCGATCTTAGACTTGGAATGAAC
* * * *
20946655 TCCGTATGCCTAAGCCAACTGATAAAACGAACGGGCAGGCGGGCACTACGCCGGCC
638 TCCGTATGCCTAAGCCAACCGACAAAACAAACGGGCAGGCGGGCACTACGACGGCC
20946711 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
1 --AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
20946776 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
64 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * *
20946841 TGAGGTTTCATGCCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCA
129 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTGAGGTTCA
20946906 GGATTTTTTAAAATTTTTTTGGATGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
193 GGATTTTTTAAAATTTTTTTGGATGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
20946971 TTCGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAAAAGATTTTGTGACCAATTG
257 TT-GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTG
*
20947036 AAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATG
321 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATG
* **
20947101 CTCCTTAAGGGGGTGTGAGTTCTCGAGAATTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
386 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
*
20947166 ACCAGCACCAATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATG
451 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGCCGGAACCCCAATG
* *
20947231 CCACCGGTCAGGTTCCCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG
515 CCGCCGGTCAGGTTCCCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* *
20947296 AGCCCAGCATGTGCTGCCATAACCCTCGGTTCGGTCCGATCTTAGACTTGGAATGAACTCCGTAT
580 AGCCCAACATGTGCTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCGTAT
* * * *
20947361 GCCTAAGCCAACCGACGAAATAAACGGGCGGGCGGGCGAGC-ACTAC-GCC
645 GCCTAAGCCAACCGACAAAACAAACGGGCAGGCGGGC-A-CTACGACGGCC
* *
20947410 -G-G-TGGGATGCGCAAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
1 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
20947472 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
66 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * ** * *
20947537 AAGTTTCATGGCAAGACGATTCATTTTCTATTTTTTACGACTTACGAAACTTTTTAAGGTTCGGG
131 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTGAGGTTCAGG
* * *
20947602 ATTTTTTTAGA------TGGA--G-TTTTGGACCCAAACTTGGTAGACGTGATCCTTGTATTTTT
195 ATTTTTTAAAATTTTTTTGGATGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTT
*
20947658 GTTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACC-ATTCGAA
259 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATT-GAA
* * * ***
20947722 AAAATTGTCCCAATTTCAGACACTTTAATGGCTACTGGCATTGAACCTGTAAAATCTCAAATGCT
323 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCT
* * **
20947787 CTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAAGAGGGATAGGGCACCAATATAAGGGCCAAGTAC
388 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
20947852 CAGCACCCATCGCACATCATGTGCGAACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC
453 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCC
*
20947917 GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGC
517 GCCGGTCAGGTTC-CC--C---G----G-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* ** * * *
20947982 ACATGCCCGAGCCCAACATGTGCTACCGCAATCCTCGGTCCAGTCTGATCTTAGA-TTGGGAATG
571 ACATGCCCGAGCCCAACATGTGCTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTT-GGAATG
20948046 AACTCCGTATGC
635 AACTCCGTATGC
20948058 TTAGACTGGG
Statistics
Matches: 1219, Mismatches: 101, Indels: 59
0.88 0.07 0.04
Matches are distributed among these distances:
683 3 0.00
684 277 0.23
685 11 0.01
686 1 0.00
687 1 0.00
688 4 0.00
690 1 0.00
694 187 0.15
695 100 0.08
696 1 0.00
699 135 0.11
700 7 0.01
701 1 0.00
702 5 0.00
704 163 0.13
705 83 0.07
706 153 0.13
707 66 0.05
708 20 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (693 bp):
AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGAAACTTTTTGAGGTTCAGGA
TTTTTTAAAATTTTTTTGGATGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCG
GTCAGGTTCCCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
ACATGTGCTGCCATAACCCTCGGTCCGGTCCGATCTTAGACTTGGAATGAACTCCGTATGCCTAA
GCCAACCGACAAAACAAACGGGCAGGCGGGCACTACGACGGCC
Found at i:20948081 original size:26 final size:26
Alignment explanation
Indices: 20948031--20948083 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20948021 CCAGTCTGAT
* *
20948031 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
20948057 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
20948083 C
1 C
20948084 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:20950013 original size:26 final size:26
Alignment explanation
Indices: 20949977--20950029 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20949967 TCGATTCGAT
20949977 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20950003 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
20950029 C
1 C
20950030 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20950909 original size:26 final size:26
Alignment explanation
Indices: 20950880--20950929 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20950870 CGGTCTGATA
*
20950880 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGCGAATGAACTCCGTATGC
20950906 TTAGACTGCGAATGAACTCCGTAT
1 TTAGACTGCGAATGAACTCCGTAT
20950930 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCCGTATGC
Found at i:20952707 original size:26 final size:26
Alignment explanation
Indices: 20952671--20952723 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20952661 TTGGTCTGAT
20952671 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20952697 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20952723 C
1 C
20952724 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20953316 original size:901 final size:898
Alignment explanation
Indices: 20949615--20953792 Score: 6332
Period size: 902 Copynumber: 4.6 Consensus size: 898
20949605 ATGCCTAAGC
* *
20949615 CAAAAACAATTTAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
1 CAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
20949680 CATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGG
65 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
20949745 TGGGAGTTCTCAATGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATC
130 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
20949810 GCACATCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTT
195 GCACATCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
** * * *
20949875 CTCCTCCGAAGCTCCAGCGATGGTGCCACGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGC
260 CTCCGGCGAAGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
20949940 CAAGCATGTCCTGTCGCAACCCTCGGTTCGAT-TCGATCTTAGACTGGGAATGAACTCCATATGC
325 CCAGCATGTGCTGTCGCAACCCTCGGTTCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGC
*
20950004 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
389 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* ** * *
20950069 GGCCAAAGGGGCAGTATGCATAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCTT
454 GGCCAGAGGGGCAGTATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * *
20950134 GCTGCCTTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
519 GCTGCCTTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
20950199 CGACGAAACGAGCGGGTTGGTGGGCAGGCGGGCACTACGCCGGCCTGAGAGACGGGATGCGCAAG
584 CGACGAAACGAGC--G--GGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
20950264 CCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTAATATTTTCTGCGTGCCAATGCCA
645 CCGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCA
*
20950329 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGAG
709 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGAT
20950394 GACTCGTTTTCTATTTTTCATGA-TTTCGAAACTTTTTACGGTTCGTGATTTTTGAAAATTTTTT
774 GACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGTGATTTTTGAAAATTTTTT
** * * *
20950458 TGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCA
839 CAGAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
* *
20950518 CAAAAAAATTCAGCTAAAAACTCGAAGTCTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
20950583 ATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* *
20950648 ATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
131 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
*
20950713 CACATCATGTGCGCACACCCCCCAG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
196 CACATCATGTGCGCACA-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* *
20950777 CTCCGGCGAAGCTCCAGCAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
260 CTCCGGCGAAGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
20950842 CCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCT
325 CCAGCATGTGCTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * *
20950907 TAGACTGCGAATGAACTCCGTATCCCTAAGTCAACCGACGAAACGAGCGTACGGGCGCTCAGCCG
390 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * **
20950972 GCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTACTGTTGATCCTG
455 GCCAGAGGGGCAGTATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
** * * ** *
20951037 CTATCGTAACCCTCGATCCGGTCTAATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACC
520 CTGCCTTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
20951102 GACAAAACGAGCGGGC--G--GGCGGGCACTACCCCGGTCAGAGAGACGGGATGCGCAAGCCGTG
585 GACGAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* * * * * *
20951163 GATCGATGGGGTGGTAGGTGGGTTTCGGCACATCTTCGTATTTCTACATGCCAATGCCATTTCTA
650 GATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
20951228 TGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCG
715 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGATGACTCG
* * * * * * *
20951293 TTTTCTATTTTTCACGATTTTTGAAACGTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
780 TTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGTGATTTTTGAAAATTTTTTCAGAAA
* * *
20951358 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGTA
845 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
**
20951412 CAATCAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
20951477 ATTTTAAACACTTTAATGGCTACTGGCATCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * ** *
20951542 GTGAGTTCTCAAGGTTTGTTGAGGGACAGGGCACCAATATAAGGGCCAAGTACCAGCCCCCATCG
131 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
20951607 CACATCAAGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCACAATGCCGCCGGTCAGGTT
196 CACATCATGTGCGCACACCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
20951672 CTCCGAC-AATGCT-C-GCGATGGTGCCCCGGCGAAGAAAAATGCCGCACCAACACATGCCCGAG
260 CTCCGGCGAA-GCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * *
20951734 CCCAGCATGTGCTGTCGCAGCCCTCAG-TCTAGTCTGATCTTAGACTGGGAATGAACTCTGTATG
324 CCCAGCATGTGCTGTCGCAACCCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
20951798 CTTAGACTGGGAATGAACTCCGTAGGCCTAAGTCAACCCACGAAACAAGCGTGCAGGCACTCAGC
388 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** *
20951863 CGGCCAGAGGTGCAGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTATGTGCTACCGATCC
453 CGGCCAGAGGGGCAGTATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * *
20951928 TGCTGCCACAACCCTCAGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
518 TGCTGCCTTAACCCTC-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
20951993 ACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCA
582 ACCGACGAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
20952058 GTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
647 GTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
*
20952123 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
712 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGATGAC
* * ** * *
20952188 TCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAG
777 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGTGATTTTTGAAAATTTTTTCAG
* * *
20952253 AAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGTA
842 AAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
*
20952310 CAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* *
20952375 ATTTCAGACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
20952440 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
131 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
20952505 CACATCACGTGCGCACACCCCCTGG-CCCCCCGATCGCCGAAACCCTAATGCCGCCGGTCAGGTT
196 CACATCATGTGCGCACACCCCC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
20952569 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGCAGAAAAATGCGGTACCAGCACATGCCCGAGC
260 CTCCGGCGAAGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * *
20952634 CCAGCTTGTGCTGCCACAACCCTTGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
325 CCAGCATGTGCTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
20952699 TAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCA
390 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* ** * **
20952764 GCCAGAGGGGCAGTATGCACAAATCGAGGATCAGTCGGGTCCCCCTCTGCGTGCTATCGATCCTG
455 GCCAGAGGGGCAGTATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* *
20952829 CTGCCTTAACCCTCGGTCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACC
520 CTGCCTTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
20952894 GATGAAATGAGCGGGCTGGCGGGCAGGCGGGCACTACGCCGGCCTGAGAGACGGAATGCGCAAGC
585 GACGAAACGAGC--G--GGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
20952959 CGTGGATCGATAGGGTGCTAGGTGGATTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
646 CGTGGATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
20953024 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTAATGGCAACACGA
711 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGATGA
20953089 CTCGTTTTCTATTTTTCATGA-TTTCGAAACTTTTTACGGTTCGTGATTTTTGAAAATTTTTTCA
776 CTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGTGATTTTTGAAAATTTTTTCA
*
20953153 GAAAGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
841 GAAAGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
20953211 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
1 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
20953276 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
66 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
20953341 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCG
131 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
*
20953406 CACATCATGTGCGCATACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
196 CACATCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * *
20953471 TCTGGTGAAGCTCCAGCGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCACATGCCCAAGG
261 TCCGGCGAAGCTCCAGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * *
20953535 CAAGCATGTGCTGTTGCAACCCTTGGTTCGGTCCGATCTTAGACTTGGAATGAACTCCGTATGCT
325 CCAGCATGTGCTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCT
* * *
20953600 TAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGTGCGTGCGGGCGCTCAGCCA
390 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* **
20953665 GCCAGAGGGGCAGTATACGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
455 GCCAGAGGGGCAGTATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
*
20953730 CTGCCTTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
520 CTGCCTTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
20953793 AAACAATTCA
Statistics
Matches: 2967, Mismatches: 286, Indels: 46
0.90 0.09 0.01
Matches are distributed among these distances:
892 1 0.00
893 325 0.11
894 430 0.14
895 47 0.02
896 2 0.00
897 44 0.01
898 538 0.18
899 224 0.08
900 6 0.00
901 627 0.21
902 710 0.24
903 13 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
TCCGGCGAAGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
CAGCATGTGCTGTCGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
CCAGAGGGGCAGTATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
TGCCTTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGATGACTCGT
TTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGTGATTTTTGAAAATTTTTTCAGAAAG
AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
Found at i:20953601 original size:26 final size:26
Alignment explanation
Indices: 20953572--20953624 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20953562 TCGGTCCGAT
*
20953572 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20953598 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20953624 C
1 C
20953625 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20957705 original size:26 final size:26
Alignment explanation
Indices: 20957676--20957731 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20957666 CCGGTTCGAT
*
20957676 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
20957702 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20957728 CTTA
1 CTTA
20957732 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20958456 original size:897 final size:895
Alignment explanation
Indices: 20956053--20959353 Score: 4310
Period size: 902 Copynumber: 3.7 Consensus size: 895
20956043 CCCCTCTGCG
* * * *
20956053 TGCTACCGCAACCCTCGGC-CCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCG
1 TGCTGCCGCAACCCTC-GCTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * ** * * * *
20956117 TCCAACGAAACGAGCGAGCGGACGCACGGGCGGGTACTATGCCAAG-CAGAGAGACGGGATGCGC
65 ACCGATGAAAC-AGC-AGCGGGCGGGCGGGTGGGCACTACGCC-GGCCAGAGAGACGGGATGCGC
* * * * *
20956181 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTACGTGGCAATGC
127 AAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTATGTGCCAATGC
20956246 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
192 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA--TGAAGTTTCATGGCAAG
* * * * *
20956311 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGAATTTTTTTAAATTTT
255 ACGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
* ** * ** *
20956376 TTC-AGAAGGATTTTTGGCCCCAAACTTTCTAGACATGATCCTTGTATTTTTGTTGGCACACAAA
319 TTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
20956440 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTCGAAAAAAGTGTCCCCAT
383 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT-ACCCCAT
* * * *
20956505 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-CTCAAATGCCCTTTCAGGTGGTGT
447 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
20956569 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATCGCA
512 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
20956634 CATCATGTGCACACACCCCCTCCGG-CCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTT
577 CATCATGTGCGCACA-CCCC-CCGGCCCCCCCGATC-TCGGAACCCCAATGCCGTCGGTCAGGTT
* * * *** *
20956698 CTCC-AGCGATGCTCTGGCAATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCCGAG
639 CTCCGA-CGATGCTCCGACAATCGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAG
* * *
20956762 CCCAGCATGTGCTGCCGC-A--A-C---CC---TCAGTC-----C---G-AT---CT--G-AT-C
703 CCCAACATGTGCTGCCACAACCATCGGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGC
*
20956801 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCT
768 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCT
* * * * ** *
20956866 GGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGACCGGGTCCCCCTCTGTGTGCTGTCGATCC
833 GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATC-AGCAGGTTCCCCTCTGCATGCTGCCGATCC
* * * *
20956930 TGCTACCGCAACCCTCGCTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGCTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * *
20956995 CCGACGAAACGAGCAGACGGGCGGGTGGGTGGGCACTACGCCGGCCA-AGAGACGGGAAGCGCAA
66 CCGATGAAAC-AGCAG-CGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
20957059 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTAT-TTTTCTATGTGCCAATGCC
129 GCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTT-TATGTGCCAATGCC
* *
20957123 ATTTTTATGGCTTGTAAATTCGTACAATGTTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
193 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT--CATGAAGTTTCATGGCAAGA
* * ** *
20957188 CGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTACGGTTTTGGATTTTTTTAAATTTTT
256 CGACTCGTTTTCTATTTTTCACGA-TTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
* * *
20957253 TCGGAAGGAGTTTTGGCCCCAAAATTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
320 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
20957318 CAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATT
385 -AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTA-CCCCATT
*
20957383 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
448 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
20957447 AGTTCTCGAGGTTTGATGAGGGATAGGGGG-TAAATATAAGGGCCAAGTACCAGCACCCATCGCA
513 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCT-AATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
20957511 CATCATGTGCGCACACCGCCCCGGCCCCCCCGATCACCGAAACCCAATGCCGTCGGTCAGGTTCT
577 CATCATGTGCGCACACC-CCCCGGCCCCCCCGATCTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * *
20957576 TCGATGATGCTCCGACGATCGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
641 CCGACGATGCTCCGACAATCGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* * * *
20957641 AACATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTATACTGGGAATGAACTCCGTATGCTTA
706 AACATGTGCTGCCACAACCATCGGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
20957706 GACTGGGAATGAACTCCTTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGC
771 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGC
* * * * * * *
20957771 CAGAGGGGTGGGATACACAAGCCAAGGATCAGTCAAGTTCCCCTCTGCCTGCTGCCGATCT
836 CAGAGGGGCGGGATGCGCAAGCCGAGGATCAG-CAGGTTCCCCTCTGCATGCTGCCGATCC
* * *
20957832 TGCTGCCGTAACCCTCGCTTCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAG
1 TGCTGCCGCAACCCTCGCTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * **
20957897 TCGATGAAA-TG-AGCGGGCGGGCAGTTGGGCACTACG-CGAGCCAGAGACACGGGATGCATAAG
66 CCGATGAAACAGCAGCGGGCGGGCGGGTGGGCACTACGCCG-GCCAGAGAGACGGGATGCGCAAG
* * * **
20957959 TCGTGGATCGATAGGGTAGTGGGTGGGTTTAGGCACATCATCATATTTTTACATGCCAATGCCAT
130 CCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTATGTGCCAATGCCAT
* *
20958024 TTTTATGGCTTGTAAATTCATACAGTGGTCCCCTAAGCCTTCGATGAAGTTTCATGGCAAGACGA
195 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC-ATGAAGTTTCATGGCAAGACGA
* *
20958089 CTCGTTTTCTATTTTTCACGATTTATGAAACTTATTGCGGTTCGGGATTTTTTAAAATTTTTTCG
259 CTCGTTTTCTATTTTTCACGATTT-TGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCG
* *
20958154 AAAGGATTTTTGGCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
323 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
20958219 AGTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTACCCCATTTCAGA
388 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTACCCCATTTCAGA
20958284 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
20958349 TCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *
20958414 GTGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
583 GTGCGCACACCCCCCGGCCCCCCCGATC-TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
* * *** ** *
20958479 ATGCTCCGGCAATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
647 ATGCTCCGACAATCGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATG
* *
20958544 TGCTGTCACAACCATCGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
712 TGCTGCCACAACCATCGGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* ** *
20958609 GAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCAGCTGGCCAGAGG
777 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGG
* * * * *
20958674 GGCGGGATGCGCAAGCTGAGGATCAGCCGGGTCCCCTTCTACATGCTGCCAATCC
842 GGCGGGATGCGCAAGCCGAGGATCAGCAGGTTCCCC-TCTGCATGCTGCCGATCC
* ** * * * * *
20958729 TACTGCTACAACCCTTGATCCAGTCTGATCTTAGAC-CGAGAATTAACTCCGTATGCCTAAGCTA
1 TGCTGCCGCAACCCTCGCTCCAGTCTGATCTTAGACTAG-GAATGAACTCCGTATGCCTAAGCCA
* * * * * *
20958793 ACCGATGAAACGAGCAGGCGGGTGGGCGGGCGGGCATTATGCCGGCTAGAGAGACGAGATGCGCA
65 ACCGATGAAAC-AGCA-GCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
20958858 AGCCGTGGATAGATAGGGTAGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCC
128 AGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTATGTGCCAATGCC
* * * *
20958923 ATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTAACCTAAAGTTTCATCGCAAGA
193 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT--CATGAAGTTTCATGGCAAGA
* * * * *
20958988 CGACTCGTTTTCTATTTTTCACAATTTTTAAATTTTTTTGTGGTTCAGGATTTTTTAAAACTTTT
256 CGACTCGTTTTCTATTTTTCACGATTTTGAAA-CTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
* * * *
20959053 TCGAAAAGAGTTTTCGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-AAA
320 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
20959117 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
385 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT-ACCCCATTT
*
20959182 CAGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
449 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
20959247 GTTCTCCAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
514 GTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
20959312 TCATGTGCGCGCA-CCCCCGGCCCCCCCGATCATCGGAACCCC
579 TCATGTGCGCACACCCCCCGGCCCCCCCGATC-TCGGAACCCC
20959354 CCGAGCCCAG
Statistics
Matches: 2135, Mismatches: 229, Indels: 96
0.87 0.09 0.04
Matches are distributed among these distances:
875 3 0.00
876 349 0.16
877 284 0.13
878 16 0.01
880 1 0.00
883 2 0.00
886 4 0.00
891 1 0.00
894 1 0.00
895 2 0.00
896 87 0.04
897 443 0.21
898 161 0.08
899 107 0.05
900 7 0.00
901 220 0.10
902 446 0.21
903 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
TGCTGCCGCAACCCTCGCTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAACAGCAGCGGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTTTATGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTACCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCCGATCTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
TCCGACAATCGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATGTGCT
GCCACAACCATCGGTCCGGTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
GAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCG
GGATGCGCAAGCCGAGGATCAGCAGGTTCCCCTCTGCATGCTGCCGATCC
Found at i:20958609 original size:26 final size:26
Alignment explanation
Indices: 20958573--20958625 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20958563 CTGGTTCAAT
20958573 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20958599 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20958625 C
1 C
20958626 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20959314 original size:902 final size:882
Alignment explanation
Indices: 20953790--20959353 Score: 6655
Period size: 894 Copynumber: 6.3 Consensus size: 882
20953780 ATGCCTAAGC
*
20953790 CAAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
1 CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
20953855 CATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * *
20953920 TGGGAGTTCTCGATGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
20953985 ACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAAGTT
196 GCACATCATGTGCACACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
*
20954050 CT--GAGCGATGCTCTGGCGATGGTGCCCCGGTGAAAAAAAATGTGGCACCAGCACATGCCCGAG
261 CTCCGA-CGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAG
* *
20954113 CCCAGCATGTGCTGCCGCAACC-CTCGG--TCCG--G--TCTGATCATAGACTGGGAATGAACTC
325 CCCAGCATGTGCTGCCGCAACCTCTCGGTCTCCGATGACTCCGATCTTAGACTGGGAATGAACTC
* * * *
20954171 CGTATGCCTAAGTCAACCCACAAAACGATCGTGCGGGCGCTCAGCCGGCCATAGGGGCAGGATGC
390 CGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGC
* * * ** *
20954236 GTAACCCG-GAGATCAG-CTAGATCCCC--CT-C-T-AT---G-T-C--CTGCCACAACCCTCGG
455 GCAAGCTGAG-GATCAGTCCGGATCCCCTTCTGCATGCTGCCGATCCTGCTGCCACAACCCTCGG
* * * * * *
20954287 TCCGGTCTGATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCCAATCGATGAAAC-ATGCGGG
519 TCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-GCAGG
* * * * *
20954351 CGAACGGGCGGGC--G--CTACGCCGGCTAGAGGGACGGGATGTGCAAGCCGTAGATCGATAGGG
583 CGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * *
20954412 TGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAA
648 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
20954477 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
713 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
20954542 TCACGATTTTGAAACTTTTTACGGTTCGGGATCTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCC
778 TCACGATTTTTAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
* * *
20954607 CAAACTTGGTAGATGTGATCCTTTTATTTTTGCTGGCATG
843 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
** * *
20954647 CCCCAAACAATTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
1 -CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
20954712 CCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGGG
65 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
20954777 GTGTGAGTTCTCGATGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCAT
130 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * *
20954842 CGCACATCATGTGCGCAGACCCCCCCCGGCCGCCCGATCGTCGGAACCCCAATGACGCCGATCAG
195 CGCACATCATGT--GCACACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* *
20954907 GTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGTGAAAAAAAATGTGGCACCAGCACATGCTCG
258 GTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCG
* *
20954972 AGCCCAGCATGTGTTGCCGCAACC-CTCGG--TCC---GA-TCCGATCATAGACTGGGAATGAAC
323 AGCCCAGCATGTGCTGCCGCAACCTCTCGGTCTCCGATGACTCCGATCTTAGACTGGGAATGAAC
** * * *
20955030 TTTGTATGCCTAAGTCAACTCACAAAACGAGCGTGCGGGCGCTCAGCCT-GCTAGAGGGGCGAGA
388 TCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG-CTGGCCAGAGGGGCGGGA
* * * * * * **
20955094 TGTGCAAGCCTG-GGAT-TGATCTGCCGATCCTGCTCCTGCAACCCTCGGTCCGGTCCCCCTCTA
452 TGCGCAAG-CTGAGGATCAG-TC--CGGATCC-CCTTCTGC-A---T--G--C--TGCCGATC--
* * * *
20955157 CGTGCTGTCGCAACCCTTCGGTCCAGTTTGATCTTAGATTGGGAATGAACTCC-TATGCCTAAGC
500 C-TGCTGCCACAACCC-TCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * *
20955221 CATCCGACGAAACGAGC-GAGAGGACGCGCGGGTGGGTACTACGTCGGCCAGAGAGACGGGATGC
563 CAACCGACGAAACGAGCAG-GCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
20955285 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGGCAAT
627 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
20955350 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
692 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
20955415 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GGATCTTTTAAAAAT
757 AGACGACTCGTTTTCTATTTTTCACGATTTTT-AAACTTTTTACGGTTCGGGAT-TTTTTAAAAT
* * * * * *
20955479 TTTTT-GGAAGGAGTTTTGGTCCCACACTTGGTAGAGGTGATCCTTTTATTTTTGCTGGCATG
820 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
20955541 CCCAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCT
1 -CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
20955605 CCGTTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGG
65 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
20955670 GTGTGAGTTCTCGATGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCAT
130 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * *
20955735 CACCCATCATGTGCGCACACCCCCCCGGCCCCCCGATCG-CTGGAACCCCAATGCCGCCGATCAG
195 CGCACATCATGTGCACACA-CCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAG
* *
20955799 GTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGTGAAAAAAAATGTGGCACCAGCACATGCCTG
258 GTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCG
** * *
20955864 AGCCCAGCATGTGCTATCGCAACCT-TTGG--TCCG--G--TCCGATCATAGACTGGGAATGAAC
323 AGCCCAGCATGTGCTGCCGCAACCTCTCGGTCTCCGATGACTCCGATCTTAGACTGGGAATGAAC
* * *
20955922 TCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGAGCGCTCAG-TCGGCTAGAGGGGCGGGA
388 TCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGCGGGA
* * ** * * **
20955986 TGTGCAAGCCTG-GGATCGGTTTGTCGATCCTTACTGCCTGCAACCCTCGGTCTGGTCCCCCTCT
452 TGCGCAAG-CTGAGGATCAGTCCG--GATCC--CCT-TCTGC-A---T--G-CT-G--CCGATC-
* * * *
20956050 GCGTGCTACCGCAACCCTCGGCCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
500 -C-TGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * ** * * *
20956115 CGTCCAACGAAACGAGC-GAGCGGACGCACGGGCGGGTACTATGCCAAG-CAGAGAGACGGGATG
563 CAACCGACGAAACGAGCAG-GCGGACGGGCGGGCGGGCACTACGCC-GGCCAGAGAGACGGGATG
* *
20956178 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTCTACGTGGCAA
626 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
20956243 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
691 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
20956308 AAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCTGAATTTTTTTAAAT
756 AAGACGACTCGTTTTCTATTTTTCACGATTTTT-AAACTTTTTACGGTTCGGGATTTTTTAAAAT
* ** * **
20956373 TTTTTC-AGAAGGATTTTTGGCCCCAAACTTTCTAGACATGATCCTTGTATTTTTGTTGGCACA
820 TTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
20956436 CAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTCGAAAAAAGTGTCC
1 C-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
20956501 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-CTCAAATGCCCTTTCAGGTG
65 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
20956565 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCAT
130 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
*
20956630 CGCACATCATGTGCACACACCCCCTCCGGCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAG
195 CGCACATCATGTGCACACA-CCCC-CCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* ** *
20956695 GTTCTCC-AGCGATGCTCTGGCAATGGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCC
258 GTTCTCCGA-CGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCC
*
20956759 GAGCCCAGCATGTGCTGCCGCAACC-CTCAG--TCCGAT--CT--GATCTTAGACTGGGAATGAA
322 GAGCCCAGCATGTGCTGCCGCAACCTCTCGGTCTCCGATGACTCCGATCTTAGACTGGGAATGAA
* * *
20956817 CTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAGCTGGCCAGAGGGGCGGGA
387 CTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGA
* * * ** * * *
20956882 TGCGCAAG-TCGAGGATC-GACCGGGTCCCCCTCTGTGTGCTGTCGATCCTGCTACCGCAACCCT
452 TGCGCAAGCT-GAGGATCAGTCCGGATCCCCTTCTGCATGCTGCCGATCCTGCTGCCACAACCCT
* * *
20956945 CGCTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCA
516 CGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA
* * * * *
20957010 GACGGGCGGGTGGGTGGGCACTACGCCGGCCA-AGAGACGGGAAGCGCAAGCCGTGGATCGATAG
581 GGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * *
20957074 GGTGGTAGGTGGGTTTAGGCACATCTTTATTTTTCTATGTGCCAATGCCATTTTTATGGCTTGTA
646 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA
* * * *
20957139 AATTCGTACAATGTTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTATATT
711 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
** * *
20957204 TTTCACGATTTTTGAAACTTTTTACGGTTTTGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGG
776 TTTCACGATTTTT-AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG
* *
20957269 CCCCAAAATTGGTAGATGTGATCCTTGTATTTTTGTTGGCATG
840 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
20957312 CACAAACAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATC
1 CA-AAA-AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
20957377 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GG
64 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
**
20957441 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTAAATATAAGGGCCAAGTACCAGCACCCA
129 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
20957506 TCGCACATCATGTGCGCACACCGCCCCGGCCCCCCCGATC-ACCGAAACCCAATGCCGTCGGTCA
194 TCGCACATCATGTGCACACACC-CCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCA
* * * * * *** **
20957570 GGTTCTTCGATGATGCTCCGACGATCGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCC
257 GGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCC
*
20957635 GAGCCCAACATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTATACTGGGAATGAACTCCGTA
322 GAGCCCAGCATGTGCTGCCGCAA-CCTC--T-CGG-TC--TC-----C---G-ATG-ACTCCG-A
* * * * *
20957700 TGCTTAGACTGGGAATGAACTCCTTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCA
369 T-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCA
* * * * ** ** * *
20957765 GCCGGCCAGAGGGGTGGGATACACAAGCCAAGGATCAGTCAAGTTCCCC-TCTGCCTGCTGCCGA
433 GCTGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCAGTCCGGATCCCCTTCTGCATGCTGCCGA
* ** * * *
20957829 TCTTGCTGCCGTAACCCTCGCTTCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
498 TCCTGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
** * * * ** *
20957894 CAGTCGATGAAATGAGC--G-GG-CGGGCAGTTGGGCACTACG-CGAGCCAGAGACACGGGATGC
563 CAACCGACGAAACGAGCAGGCGGACGGGCGGGCGGGCACTACGCCG-GCCAGAGAGACGGGATGC
** * * * * * *
20957954 ATAAGTCGTGGATCGATAGGGTAGTGGGTGGGTTTAGGCACATCATCATATTTTTACATGCCAAT
627 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
* *
20958019 GCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCCTAAGCCTT--CGATGAAGTTTCATGGC
692 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG-TGAAGTTTCATGGC
* * *
20958082 AAGACGACTCGTTTTCTATTTTTCACGATTTATGAAACTTATTGCGGTTCGGGATTTTTTAAAAT
756 AAGACGACTCGTTTTCTATTTTTCACGATTT-TTAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* *
20958147 TTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATG
820 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * *
20958210 CACAAAAAAAGTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT-ACC
1 CA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
20958274 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
65 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
20958339 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCAT
130 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
20958404 CGCACATCATGTGCACACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
195 CGCACATCATGTGCACACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * * *
20958469 TTCTCCGGCGATGCTCCGGCAATGGTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCGA
259 TTCTCCGACGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGA
* *
20958534 GCCCAGCATGTGCTGTCACAACCATCGGTCTGGTTCAATCTTAGACTGGGAATGAACTCCGTATG
324 GCCCAGCATGTGCTGCCGCAACC-TC--TC-GG-TC--TC-----C---G-ATG-ACTCCG-AT-
** * *
20958599 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCACTCAGC
370 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * *
20958664 TGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCAG-CCGGGTCCCCTTCTACATGCTGCCAATC
435 TGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCAGTCCGGATCCCCTTCTGCATGCTGCCGATC
* * * * * * * *
20958728 CTACTGCTACAACCCTTGATCCAGTCTGATCTTAGACCGAGAATTAACTCCGTATGCCTAAGCTA
500 CTGCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * *
20958793 ACCGATGAAACGAGCAGGCGGGTGGGCGGGCGGGCATTATGCCGGCTAGAGAGACGAGATGCGCA
565 ACCGACGAAACGAGCAGGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * **
20958858 AGCCGTGGATAGATAGGGTAGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAATGCC
630 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* * * * *
20958923 ATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTAACCTAAAGTTTCATCGCAAGA
695 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** * *
20958988 CGACTCGTTTTCTATTTTTCACAATTTTTAAATTTTTTTGTGGTTCAGGATTTTTTAAAACTTTT
760 CGACTCGTTTTCTATTTTTCACGATTTTTAAA-CTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
20959053 TCGAAAAGAGTTTTCGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
824 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
20959112 CAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
1 CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
20959177 CATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
66 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
20959242 TGTGAGTTCTCCAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
131 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
20959307 GCACATCATGTGCGCGCA-CCCCCGGCCCCCCCGATCATCGGAACCCC
196 GCACATCATGTGCACACACCCCCCGG-CCCCCCGATCGTCGGAACCCC
20959354 CCGAGCCCAG
Statistics
Matches: 4151, Mismatches: 423, Indels: 221
0.87 0.09 0.05
Matches are distributed among these distances:
858 199 0.05
860 52 0.01
861 170 0.04
862 7 0.00
864 5 0.00
865 1 0.00
867 2 0.00
868 1 0.00
873 1 0.00
875 1 0.00
876 353 0.09
877 287 0.07
878 17 0.00
880 5 0.00
881 2 0.00
882 1 0.00
883 2 0.00
884 2 0.00
886 3 0.00
887 1 0.00
889 1 0.00
890 46 0.01
891 41 0.01
892 232 0.06
893 189 0.05
894 575 0.14
895 228 0.05
896 349 0.08
897 442 0.11
898 157 0.04
899 111 0.03
900 3 0.00
901 214 0.05
902 442 0.11
903 9 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (882 bp):
CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCACACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
CTCCGACGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
CCAGCATGTGCTGCCGCAACCTCTCGGTCTCCGATGACTCCGATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCG
CAAGCTGAGGATCAGTCCGGATCCCCTTCTGCATGCTGCCGATCCTGCTGCCACAACCCTCGGTC
CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGG
ACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
CGATTTTTAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA
ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
Found at i:20959426 original size:26 final size:26
Alignment explanation
Indices: 20959397--20959449 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20959387 CCGGTCCGAT
*
20959397 CTTAGATTGGGAATTAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
20959423 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
20959449 C
1 C
20959450 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:20960146 original size:817 final size:817
Alignment explanation
Indices: 20958529--20960170 Score: 2357
Period size: 816 Copynumber: 2.0 Consensus size: 817
20958519 CCAGCACATG
* * *
20958529 CCCGAGCCCAGCATGTGCTGTCACAACCATCGGTCTGGTTCAATCTTAGACTGGGAATGAACTCC
1 CCCGAGCCCAGCATGTGCTGCCACAACCATCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCC
* * *
20958594 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCAC
66 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCATGCGGGCAC
* * * *
20958659 TCAGCTGGCCAGAGGGGCGGGATGCGCAAGCTGAGGATCAGCCGGGTCCCCTTCTACATGCTGCC
131 TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGAGGATCAGCCGAGTCCCCCTCTACATGCTGCC
* ** * *
20958724 AATCCTACTGCTACAACCCTTGATCCAGTCTGATCTTAGACCGAGAATTAACTCCGTATGCCTAA
196 AATCCTACTGCTACAACCCTAGATCCAGTCCAATCTTAGACAGAGAATGAACTCCGTATGCCTAA
** ** * * * *
20958789 GCTAACCGATGAAACGAGCAGGCGGGTGGGCGGGCGGGCATTATGCCGGCTAGAGAGACGAGATG
261 GCTAACCGACAAAACGAGCA-------GGGCAAGCGGGCACTACGCCAGCCAGAGAGACGAGATG
* * *
20958854 CGCAAGCCGTGGATAGATAGGGTAGTAGGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAA
319 CGCAAGCCATGGATAGATAGGCTAGTAGGTGGGTTTAGGGACATCTTCACATTTCTGTGTGCCAA
*
20958919 TGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTAACCTAAAGTTTCATCGC
384 TGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCCTAACCTAAAGTTTCATCGC
* **
20958984 AAGACGACTCGTTTTCTATTTTTCACAATTTTTAAATTTTTTTGTGGTTCAGGATTTTTTAAAAC
449 AAGACGACTCGTTTTCTATTTTTCACAATTTTTAAATCTTTTTACGGTTCAGGATTTTTTAAAAC
*
20959049 TTTTTCGAAAAGAGTTTTCGCCCCAAGCTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
514 TTTTTCGAAAAGAGTTTTCGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
20959114 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
579 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
20959179 TTTCAGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
644 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGGG
*
20959244 TGAGTTCTCCAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
709 TGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
20959309 ACATCATGTGCGCGCA-CCCCCGGCCCCCCCGATCATCGGAACCC
774 ACATCATGTGCGCGCACCCCCCGG-CCCCCCGATCATCGGAACCC
** * * * *
20959353 CCCGAGCCCAGCATGTGCTGCCGTAACGC-TTGGTCCGGTCCGATCTTAGATTGGGAATTAACTC
1 CCCGAGCCCAGCATGTGCTGCCACAAC-CATCGGTCCGGTCCAATCTTAGACTGGGAATGAACTC
* ** *
20959417 CGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGGGCATGCGGGCG
65 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCATGCGGGCA
* * * * *
20959482 CTCAGCCGGCTAGAGGGGCATGATGCGCAAGCTGAGGATCGGTCGAGTCCCCCTCTACGTGCTGC
130 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGAGGATCAGCCGAGTCCCCCTCTACATGCTGC
* * * ** *
20959547 CACTCCTGCTGCTGCAACCCTCAG-TCTGGTCCAATGTTAGACTAG-GAATGAACTCCGTATGCC
195 CAATCCTACTGCTACAACCCT-AGATCCAGTCCAATCTTAGAC-AGAGAATGAACTCCGTATGCC
* *
20959610 TAAG-TCAACCGACAAAATGAGCA-GGCAAGCGGGCACTACGTCAGCCAGAGAGACTG-GATGCG
258 TAAGCT-AACCGACAAAACGAGCAGGGCAAGCGGGCACTACGCCAGCCAGAGAGAC-GAGATGCG
* * * * *
20959672 CAAGCCATGGATCGATAGGCTGGTAGGTGGTTTTAGGTACATCTTCACATTTTTGTGTGCCAATG
321 CAAGCCATGGATAGATAGGCTAGTAGGTGGGTTTAGGGACATCTTCACATTTCTGTGTGCCAATG
* * * * *
20959737 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAA
386 CCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCCTAACCTAAAGTTTCATCGCAA
** * *
20959802 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-CTTTTTACGGTTCGGGATTTTTTAAAATT
451 GACGACTCGTTTTCTATTTTTCACAATTTTT-AAATCTTTTTACGGTTCAGGATTTTTTAAAACT
* * * *
20959866 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
515 TTTTCGAAAAGAGTTTTCGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCA-
*
20959931 AAAAAAATTCAGCTAAAAAC-CTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
579 AAAAAAATTCAGCTAAAAACTC-AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
20959995 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGG
643 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGG
* *
20960060 GTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
708 GTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* *
20960125 CACATCATGTGTGCGCACCCCCCGGCCCCCCGATCGTCGGAACCC
773 CACATCATGTGCGCGCACCCCCCGGCCCCCCGATCATCGGAACCC
20960170 C
1 C
20960171 AATGCCGCCG
Statistics
Matches: 729, Mismatches: 80, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
816 259 0.36
817 226 0.31
818 7 0.01
823 1 0.00
824 233 0.32
825 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (817 bp):
CCCGAGCCCAGCATGTGCTGCCACAACCATCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACAAGCATGCGGGCAC
TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGAGGATCAGCCGAGTCCCCCTCTACATGCTGCC
AATCCTACTGCTACAACCCTAGATCCAGTCCAATCTTAGACAGAGAATGAACTCCGTATGCCTAA
GCTAACCGACAAAACGAGCAGGGCAAGCGGGCACTACGCCAGCCAGAGAGACGAGATGCGCAAGC
CATGGATAGATAGGCTAGTAGGTGGGTTTAGGGACATCTTCACATTTCTGTGTGCCAATGCCATT
TTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCCTAACCTAAAGTTTCATCGCAAGACGA
CTCGTTTTCTATTTTTCACAATTTTTAAATCTTTTTACGGTTCAGGATTTTTTAAAACTTTTTCG
AAAAGAGTTTTCGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAA
TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTC
TCCAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCGCACCCCCCGGCCCCCCGATCATCGGAACCC
Found at i:20961228 original size:26 final size:26
Alignment explanation
Indices: 20961192--20961244 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20961182 CCGGTCTGAT
*
20961192 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATAAACTCCATATG
*
20961218 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
20961244 C
1 C
20961245 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:20962113 original size:26 final size:26
Alignment explanation
Indices: 20962084--20962136 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20962074 CCGGTTCGAT
20962084 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
20962110 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20962136 C
1 C
20962137 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20962833 original size:903 final size:900
Alignment explanation
Indices: 20959353--20965973 Score: 8809
Period size: 902 Copynumber: 7.4 Consensus size: 900
20959343 ATCGGAACCC
** * * * *
20959353 CCCGAGCCCAGCATGTGCTGCCGTAACGCTTGGTCCGGTCCGATCTTAGATTGGGAATTAACTCC
1 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
20959418 GTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGGGCATGCGGGCGC
66 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * *
20959483 TCAGCCGGCTAGAGGGGCA-TGATGCGCAAGCTGAGGATCGGTCGAGTCCCCCTCTACGTGCTGC
131 TCAGCCGGCCAGAGGGG-AGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGC
* * * * * * * *
20959547 -CACTCCTGCTGCTGCAACCCTCAGTCTGGTCCAATGTTAGACTAGGAATGAACTCCGTATGCCT
195 TGA-TCTTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
20959611 AAGTCAACCGAC-AAA--A-TGAGCAGGCAA-GCGGG-CACTACGTCAGCCAGAGAGACTGGATG
259 AAGCCAACCGACGAAACGAGTGGGCGGGGAACGGGGGTCACTACGTCGGCCAGAGAGACGGGATG
* * * * * * *
20959670 CGCAAGCCATGGATCGATAGGCTGGTAGGTGGTTTTAGGTACATCTTCACATTTTTGTGTGCCAA
324 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAA
*
20959735 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGC
389 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
20959800 AAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAAT
454 AAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
*
20959865 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
519 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
20959930 CAAAAAAATTCAGCTAAAAAC-CTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
584 CAAAAAAATTCAGCTAAAAACTC-GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
20959994 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
648 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
*
20960059 GGTGAGTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
713 GGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
*
20960124 GCACATCATGTGTGCGCACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
778 GCACATCATGTGTGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * *
20960189 CTCCGACGATGCTCCAACGTTGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATG
843 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* ** * * *
20960247 CTCGAGTGCAGCATGTGCTGCCACAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCT
1 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * * * *
20960312 GTATGCTTAGACTAGAAATGAATTTCGTATGCCTAAGTCAAGCCACAAAACGAGCGTGCGGGCGC
66 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * *
20960377 TTAGCCGGCCAGAGGGGGGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCT
131 TCAGCCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCT
* ** * * ** * *
20960442 GATCTTGTTGCCATAAACCTTGGTCCGATCTGATCCTAGACTGGGAATTAACTCCGTATGCCTAA
196 GATCTTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
20960507 ACCAACCAACGAAACGAGTGGACGCGTGGG--CGTGCAGGT-ACTACGCCGGCCAGAGAAACGGG
261 GCCAACCGACGAAACGAGTGG--GCG-GGGAACG-G-GGGTCACTACGTCGGCCAGAGAGACGGG
* * *
20960569 ATGCGTAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGC
321 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGC
20960634 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
386 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * *
20960699 GGCAAGACGACACGTTTTGTATTTTTCACGACTTTTAAAAATTTTTACGGTTCGAGATTTTTTAA
451 GGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAA
* * ** * *
20960764 AATTTTTTCAGAAGGATTTTTGGCCGTAAACTTGGTAGACATGATCCATGTA-TTTTTTTGGCAT
516 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
*
20960828 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTC
581 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * * *
20960893 CCCATTTCAGGCACTTTAATGGTTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGG
646 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
* * *
20960958 GGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCA
711 GGGGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * *
20961023 TCGCACATCATGTGCGCAAACCCCCC-GCCCCCCTGAACGTCGGAACCCTAATGCCGCTGGTAAG
776 TCGCACATCATGTGTGCACACCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAG
* * * * * * * *
20961087 GTTCTCCGACGATGCTCTGGCAATGGTACCCTGGCGAAGAAAAATGTGGCACCCGCACATG
840 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* ** * * * *
20961148 CCCAAGCCCAAAATGTGCTTCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCC
1 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* * * *
20961213 ATATGCTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGC
66 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* *
20961278 TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGCA-TCCCCCTCTACATGCTGC
131 TCAGCCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGGTCG-AGTCCCCCTCTACGTGCTGC
* * *
20961342 TGATCCTGCTGCTGCAACCCTCGGTCC-AGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCT
195 TGATCTTGCTGCCGCAACCCTCGGTCCGA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
* *
20961406 AAGCCAACTGACG-AA--A-TGAGC-GGG--CGGGGG-CACTACGTCGGCCAGAGAGACGGGATG
259 AAGCCAACCGACGAAACGAGTGGGCGGGGAACGGGGGTCACTACGTCGGCCAGAGAGACGGGATG
* * * *
20961463 CGCAAGGCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTTTGTGTGCCAA
324 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAA
* * *
20961528 TGCCATTTTTATGGCTTATAAAATCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGC
389 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* ** * *
20961593 AACACGACTCGTTTTCCATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
454 AAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAAT
* * * * *
20961658 TTTTTTGGAAGGATTTTTGG-CCGAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
519 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
* *
20961722 CAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGTGTCCCC
584 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
20961787 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGG
649 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGG
20961852 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
714 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
20961917 CACATCATGTGTGCACACCCCCCGGCTCCCCCGATTGCCGGAACCCCAATGCCGTCGGTTAGGTT
779 CACATCATGTGTGCACACCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* **
20961982 CTCC-AGCGATGCTCCGACGATGGTGCCCCGACGAAGTAAAACACGGCACCAGCACATG
843 CTCCGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * *
20962040 CCTGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCGGTTCGATCTTAGACTAGGAATGAACTCC
1 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* *
20962105 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGGGC
66 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * ** * * * *
20962170 TCAGCCAGCCAGAGGGGAGGGATACGCAAGCTAGGGATTGGCCGAGTCCCCTTCTGCGTGCTGCT
131 TCAGCCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCT
* * * * * * *
20962235 GAT-TCTACTGCCACAACCCTCAGTCTGTTCCAATCTTAGACTAGGAATGAACTCCGTATGCCGA
196 GATCT-TGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
*
20962299 AGCCAACCGACGAAACGAGCGGGCGGGCGAACGGGTGGTCACTACGTCGGCCAGAGAGACGGGAT
260 AGCCAACCGACGAAACGAGTGGGCGGG-GAACGGG-GGTCACTACGTCGGCCAGAGAGACGGGAT
* * * * * *
20962364 TCGCAAGCCGTGGATCGATACGATGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGACA
323 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCA
*
20962429 ATGCCATTTTTATGGCTTGTAAAGTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
388 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * *
20962494 CAAGACGACTTGTTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA
453 CAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAA
* * *
20962559 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTTATCCTTATATTTTTTTTGGCATGC
518 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC
* * * *
20962624 ACAAAAACATTCAGCTAAAAGCTCGAAGTGTACCAGGTTTTGTGACCATTTGAAAAAAGTGTCCC
583 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* *
20962689 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGG
648 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
20962754 GGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
713 GGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
20962819 GCACATCATGTGTGCGCACCCCCTGGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGT
778 GCACATCATGTGTGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* *
20962884 TCTCCGACGATGCTCCGACGTTGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATG
842 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * *
20962943 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTCGGAATGAAATCC
1 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* *
20963008 GTATGCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
66 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * *
20963073 TCAGTCGACCAGAGGAGCGGGATGTGCAAGCCGGGGATCGGTC-AGGTCCCCTTTTACGTGCTGC
131 TCAGCCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGGTCGA-GTCCCCCTCTACGTGCTGC
* * * * ** * *
20963137 TGATCTTGCTGCCGTAAACCTTGGTCCAATCTGATCCTAGACTGGGAATGAACTCCGTTTGCCTA
195 TGATCTTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
20963202 AGCCAACCAACGAAACGAGTGGACGCGTGGG--CGTGCGGGT-ACTATGCCGGCCAGAGAAACGG
260 AGCCAACCGACGAAACGAGTGG--GCG-GGGAACG-G-GGGTCACTACGTCGGCCAGAGAGACGG
**
20963264 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCTG
320 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATG
*
20963329 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCA
385 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
20963394 TGGCAAGACGACTCG-TTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGACTTTTTA
450 TGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTA
* * * * *
20963458 AAATTTTTTCGGAAGGATTTTTGGCCCTAAACTTGGTAGACATGATCCATGTATTTTTGTTGGCA
515 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCA
** *
20963523 TGTGCAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGT
580 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
20963588 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTTAAAG
645 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGG
* *
20963653 GGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
710 GGGGGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * *
20963718 ATCGCACATCATGTGCGCAAACCCCCCCGGCCCCGC-ATCAT-GGAA--CCAATGCCGCC-GTAA
775 ATCGCACATCATGTGTGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCA
* * * *
20963778 GGTTCTCTG-CGAT--TCCG--GAT-GTAGCCGCTG-CGAAGAAAAATGTGGCACAAG-ACATG
839 GGTTCTCCGACGATGCTCCGACGATGGT-GCC-CCGACGAAGAAAAATGCGGCACCAGCACATG
* * * * * *
20963834 CCC-AG-CCTG-ATGTGC-G-C-GAACCTCTTC-GACTGG-CTGATCACTGCT-G-CTAGGAATG
1 CCCGAGCCCAGCATGTGCTGCCACAACC-C-TCGGTCCGGTCCGAT--CT--TAGACTGGGAATG
* *
20963889 AACTTCGTATGCTT-GACT-GGAATGAACT-CGTATGCCT-A-TC-ACCC-CGAAACGAGCGTAC
60 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * *
20963947 GGGCGCTCAGCCAGCCAG-GGGGCGGGATGCGCAAGTCGGGGATCGATCGCGTCCCCCTCTATGT
125 GGGCGCTCAGCCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTACGT
* * * * * *
20964011 GCTGCCGATCATGCTGCTGCAACCCTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTAT
190 GCTGCTGATCTTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTAT
** *
20964076 GCCTAAGCCAACCGACGAAATAAGCGGGC-GGG--C--GGG-CACTACGTCGGCCAGAGAGACGG
255 GCCTAAGCCAACCGACGAAACGAGTGGGCGGGGAACGGGGGTCACTACGTCGGCCAGAGAGACGG
* * * *
20964135 GATGCGCACGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTTTGCATG
320 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATG
**
20964200 CCAATG-CATTTTTATGGCTTAAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
385 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
20964264 TGGCAAGACGACTCGTTTTTTATTTTTC-CTGATTTTTAAAACTTTTTACGGTTCGGGATTTTTT
450 TGGCAAGACGACTCGTTTTTTATTTTTCAC-GATTTTTAAAACTTTTTACGGTTCGGGATTTTTT
* *
20964328 AAACTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTGTGGC
514 AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC
* *
20964393 ATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
579 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
20964458 TCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAA-CTCAAACGCTCTTTAAG
644 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
** * * *
20964522 GGGGTATGAGTTCACGAGGTTTGATGGGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACC
709 GGGGGGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
*
20964587 CATCGCACATCATGTGTGCACA-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTC
774 CATCGCACATCATGTGTGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTC
* *
20964651 AGGTTCT-C--C---G----G-CGA---TGCTCCGACGAATAAAAATGCGGCACCAGCACATG
838 AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * * *
20964700 CCCGAGCCCAGCATGTGCTGCCGCAACCATTGGTCCGGTTCGAT-TCTAGACTAGGAATGAACTC
1 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCT-TAGACTGGGAATGAACTC
* *
20964764 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCG
65 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
20964829 CTCAGCCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATTGG-CTGGGTCCCCTTCTGCGTGCTG
130 CTCAGCCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGGTC-GAGTCCCCCTCTACGTGCTG
** * * * * *
20964893 CCAATTTTACTGCCACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCT
194 CTGATCTTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** *
20964958 AAGCCAACCGACGAAACGAGCGGGCGGGCGAGCGGGTGGTCACTACGTCGTTCAGAGAGATGGGA
259 AAGCCAACCGACGAAACGAGTGGGCGGG-GAACGGG-GGTCACTACGTCGGCCAGAGAGACGGGA
* * * * * * **
20965023 TGCACAAGCCGTGGATCGATAGGATGGTAGGCGGGTTTAGGTACATCTTAATATTTCTATATGAA
322 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCC
*
20965088 AATGCCATTTTTATGGCTTGTAAAGTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
387 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * *
20965153 GCAGGACGACTTGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAA
452 GCAAGACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAA
* *
20965218 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTTATCCTTGTA-TTTTTTTGGCATG
517 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
* * * *
20965282 CACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGGTTTTATGACCTTTTGAAAAAAGTGTCC
582 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
20965347 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGGG
647 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
*
20965412 GGGTGAGTTCTCGATGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
712 GGGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* *
20965477 CGCACATCATGTGTGCGCACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
777 CGCACATCATGTGTGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * *
20965542 TCTCCGACGATGCTCCGACGTTGGTGCCCCGACGAAGAAAAATGTGGCACCAGGACATG
842 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
* * * * *
20965601 CCCGAGCCTAGCATGTGCTGCCACAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAAATCT
1 CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
* *
20965666 GTATGCTT-GACTAGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
66 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * *
20965730 TCAGTCGGCTAGAGGGGTGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTACGTGCTGCT
131 TCAGCCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCT
* * * * * * *
20965795 GATCTTGCTACCGTAAACCTTGGTCCGATCTAATCCTAGACTGGGAATGAACTCCGCATGCCTAA
196 GATCTTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* ** * * * * * *
20965860 GCCAACCAATAAAACGAGTGGACGCGCGGGCATGCGGGT-ACTACGCCGACCAGAGAAACGGGAT
261 GCCAACCGACGAAACGAGTGG--GCG-GGGAACGGGGGTCACTACGTCGGCCAGAGAGACGGGAT
20965924 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
323 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
20965974 CGTGAAGTTT
Statistics
Matches: 4989, Mismatches: 620, Indels: 230
0.85 0.11 0.04
Matches are distributed among these distances:
864 2 0.00
865 20 0.00
866 9 0.00
867 3 0.00
868 14 0.00
869 13 0.00
870 194 0.04
871 306 0.06
872 18 0.00
873 19 0.00
874 10 0.00
875 5 0.00
876 4 0.00
877 32 0.01
878 119 0.02
879 113 0.02
880 29 0.01
881 4 0.00
882 3 0.00
883 1 0.00
884 10 0.00
885 19 0.00
886 201 0.04
887 324 0.06
888 14 0.00
889 4 0.00
890 26 0.01
891 452 0.09
892 326 0.07
893 15 0.00
894 221 0.04
895 7 0.00
896 7 0.00
897 17 0.00
898 16 0.00
900 261 0.05
901 621 0.12
902 779 0.16
903 737 0.15
904 7 0.00
905 5 0.00
906 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
CCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGAGGGATGCGCAAGCCGGGGATCGGTCGAGTCCCCCTCTACGTGCTGCT
GATCTTGCTGCCGCAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACGAGTGGGCGGGGAACGGGGGTCACTACGTCGGCCAGAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
GACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACA
AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGGGT
GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
CATCATGTGTGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
CGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
Found at i:20963017 original size:26 final size:26
Alignment explanation
Indices: 20962980--20963039 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
20962970 CCTCGGTCCG
* *
20962980 ATCCG-AT-CTTAGACTCGGAATGAA
1 ATCCGTATGCTTAGACTAGAAATGAA
20963004 ATCCGTATGCTTAGACTAGAAATGAA
1 ATCCGTATGCTTAGACTAGAAATGAA
*
20963030 CTCCGTATGC
1 ATCCGTATGC
20963040 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.77
ACGTcount: A:0.32, C:0.22, G:0.20, T:0.27
Consensus pattern (26 bp):
ATCCGTATGCTTAGACTAGAAATGAA
Found at i:20964775 original size:26 final size:26
Alignment explanation
Indices: 20964746--20964796 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
20964736 GGTTCGATTC
20964746 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
20964772 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
20964797 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:20966513 original size:26 final size:26
Alignment explanation
Indices: 20966484--20966537 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
20966474 AATCCGATCT
20966484 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
20966510 TAGACTGGGAATGAACTTCGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
20966536 TA
1 TA
20966538 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:20967432 original size:26 final size:26
Alignment explanation
Indices: 20967382--20967434 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
20967372 CTGATCTGAT
* *
20967382 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
*
20967408 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTACGTATG
20967434 C
1 C
20967435 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:20968096 original size:12 final size:12
Alignment explanation
Indices: 20968079--20968109 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
20968069 TAAGGGATAG
20968079 GGGCCAATATAA
1 GGGCCAATATAA
20968091 GGGCCAATATAA
1 GGGCCAATATAA
20968103 GGGCCAA
1 GGGCCAA
20968110 GTACTAGCAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.39, C:0.19, G:0.29, T:0.13
Consensus pattern (12 bp):
GGGCCAATATAA
Found at i:20969664 original size:26 final size:26
Alignment explanation
Indices: 20969635--20969687 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20969625 CCGGTTCGAT
*
20969635 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20969661 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20969687 C
1 C
20969688 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20971276 original size:26 final size:26
Alignment explanation
Indices: 20971226--20971277 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
20971216 TCTGGTTCGA
* * *
20971226 TCTTAGCCTGGGAATAAATTTCGTAT
1 TCTTAGACTGGGAATAAACTCCGTAT
*
20971252 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATAAACTCCGTAT
20971278 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTTAGACTGGGAATAAACTCCGTAT
Found at i:20971868 original size:26 final size:26
Alignment explanation
Indices: 20971837--20971889 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20971827 CCGGTCTGAT
20971837 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20971863 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20971889 C
1 C
20971890 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20972204 original size:167 final size:162
Alignment explanation
Indices: 20971863--20972254 Score: 371
Period size: 167 Copynumber: 2.4 Consensus size: 162
20971853 ACTCCGTATG
* * * * **
20971863 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAA---GCGTGCGGGCGCTC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGGGGCGGGCGGGCGGGC
* * *
20971925 AGCTTTCCAGAAGGGCAGGATGCGCAAGCCGAGGATCAACCGAGTCCCCCTCTGCGTGCTGTCTA
66 AGCTTTCCAGAAGGGCAGGATGCGCAAGCCGAGGATCAACCGAGTCCCCCTCTGCATGCTGCCGA
* * ** * * *
20971990 TCCTGCTGCCACAACCGTTGGCCTGGTTTGAT
131 TCCCGCTGCCACAACCCTAAGCCTAGTCTAAT
* *
20972022 CTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCAATGAAACAAGTGGGCGGGCGGGCGGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAG-GGGCGGGCGGGCGGG
* * * *
20972087 CA-CTTAGTCGGCCAGAGGGGCCGGATGTGCAAGCCGGGGATCAACCGAGTCCCCCTCTGCATGC
65 CAGCTT--T---CCAGAAGGGCAGGATGCGCAAGCCGAGGATCAACCGAGTCCCCCTCTGCATGC
* * **
20972151 TGCCGATCCCGTTGCCGCAACCCTCAATTC-AGTCTAAT
125 TGCCGATCCCGCTGCCACAACCCT-AAGCCTAGTCTAAT
* ** * * * * *
20972189 CTTAGACTAGGAATGAATTTTGTATGCCTAAGCCAACCGATAAAACGAGCGGGCGGGTGGGTGGG
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAG-GGGCGGGCGGGCGGG
20972254 C
65 C
20972255 GGGCACTACG
Statistics
Matches: 186, Mismatches: 37, Indels: 12
0.79 0.16 0.05
Matches are distributed among these distances:
159 43 0.23
162 3 0.02
163 12 0.06
164 1 0.01
167 126 0.68
168 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.29, T:0.20
Consensus pattern (162 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACAAGGGGCGGGCGGGCGGGC
AGCTTTCCAGAAGGGCAGGATGCGCAAGCCGAGGATCAACCGAGTCCCCCTCTGCATGCTGCCGA
TCCCGCTGCCACAACCCTAAGCCTAGTCTAAT
Found at i:20973749 original size:26 final size:26
Alignment explanation
Indices: 20973711--20973763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20973701 CTGGTCTGAT
*
20973711 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
20973737 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
20973763 C
1 C
20973764 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:20974965 original size:903 final size:898
Alignment explanation
Indices: 20973091--20987221 Score: 17490
Period size: 903 Copynumber: 15.8 Consensus size: 898
20973081 GAAACGAACG
* *
20973091 GACGAGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * * *
20973156 GTATGCCATTGCCATTTTTGTGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAG
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * * *
20973221 TTTCATGGCAAGATGACTAGTTTTCTATTTTTCATTATTTTTCAAACTTTTTACGGTTCAGGATT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
* ** * *
20973286 TTTTAAAATTTTTTTGGAAATATTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGT
196 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * *
20973351 TGGCATGCAC-ATAAAATTCAGCTAAAAAATCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAA
261 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
20973415 AGTGTACCCAATTTCCAGACACTTTAATTGCTACT-GCAAG-AAAGCTGTAAAATTTCAAATGCT
326 AGTGT-CCCCATTT-CAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCT
* * *
20973478 CTTTAAGGGGGTGTGACTTCTCGAGAG-TTGATAAGGGATAGGGGGCCAATATAAGGGTCAAGTA
388 CTTTAAGGGGGTGTGAGTTCTCGAG-GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
20973542 CCATCACCCATTGTACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCTCAATGC
452 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGC
* * * *
20973607 CGTCGGTCAGGTTCTCCAGCGATGGT--GTAC-----TG----G-CGAAGAAAAATGCGGCACCG
516 CGCCGGTCAGGTTCTCCGGCGATGCTCCG-ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * * *
20973660 GCACATGCTCGAGCCCAACATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAAT
580 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAAT
* * * *
20973725 GAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACGCACGAAACAAGCGTA
644 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * * * * *
20973790 CGGGTGCTCAACCGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATTGACCGGGTCCCCTTCTGCG
709 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCTGGGTCCCCCTCTGCG
* * * * * * * * * *
20973855 TGCTGTCGATCCTACTGCTGAAACCCTTGGTCCGATCTGATCTTAAACTGGGAATGAACTCTGTA
773 TGCTGCCGATCCTGCTGCTGCAACCCCTGTTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTA
* * * * ** * *
20973920 CGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCAGTCGGAAGGGCACTACGCTGGCCAAAGA
838 TGCCTAAGCCAACCGACGAAACGAGC-GGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* * *
20973983 GACGGGATGCGCAGGCCTTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
** *
20974048 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACGTGAAG
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * **
20974113 TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAGTTTTTGCTATTCGGGATT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
* * * *
20974178 TTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAACCTTGGTAGACATGATCCTTGTATTTTTTT
196 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
20974243 TAGCATGCACAAAAAAATTCACCAAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
261 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
** *
20974308 AGTGTCCCCATTTCAGACACTTTAAAAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTT
326 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
20974373 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAG
391 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
20974438 CACCCATCGCGCATCATGTGCGCACACCCCCCGGCCCCCTCGATCGTCGAAACCCTAATGCCGCC
456 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCC
* * * * * *
20974503 GGTCAAGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGATGAAGAAAATTGTGACACCAGCACA
520 GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * *
20974568 TGCCCGAGCCCAGTACGTCCTGCCGCAACACTCGGTCCGGTTCGATCTTAGACTGGGAATGAACT
585 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG-TCGATCTTAGACTGGGAATGAACT
* * * * **
20974633 CCGTTTACTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCAAGC
649 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* ** * *
20974698 GCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCAACTGGGCCCCCCTCAGCGTGCTG
714 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCTGGGTCCCCCTCTGCGTGCTG
* * ** *
20974763 CCGATCTTGCTACTGCAACCCCTGTTCTAATCAGATCTTAGACTGGGAATGAACTCTGTATGCCT
778 CCGATCCTGCTGCTGCAACCCCTGTTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCT
*
20974828 AAGCCAACCGACGAAACGAGCTGGCAGGCGGGCGGGCGGGCACTACGCCGGCTAGAGA
843 AAGCCAACCGACGAAACGAGC-GGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
*
20974886 GACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
20974951 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAG
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * ** **
20975016 TTTCACGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAATTCAAGATT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
** *
20975081 TTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGT
196 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
20975146 TGGCATGCACAAAAAAATTTAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAA
261 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
20975211 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTT
326 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
20975276 TAAGGGGGTGAGAGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
391 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
20975341 CACCCATCGTACATCATGTGCGCAAAACCCCCTCGGCCCCCCGATCGCCGGAACCCCAATGCTGC
456 CACCCATCGCACATCATGTGCGC-ACACCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGC
* * *
20975406 CGGTCAGGTTCT-C--C---G----G-CGATGGTGCGCTGACGAAGAAAAATACGGCACCAGCAC
519 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * *
20975460 ATTCTCGGGCCCAGCATGTGCTGCCGCAA-CC-C--T-C-G--G-TC-----C---G---G---T
584 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACT
* * *
20975502 CCG-AT-CTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGC
649 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * ** *
20975565 GCTCAACCGGCTAGAGGGGCAGGATG-GCAAAGCTGGGGATCGGCCAGG-ACCCCTCTGCGTGCT
714 GCTCAGCCGGCCAGAGGGGCGGGATGCGC-AAGC-GGGGATCGGCTGGGTCCCCCTCTGCGTGCT
* ** * ** * * ** * *
20975628 GCCGATCCTGCTATCCACACACGCTCCAGGCCCGATTTGGACCTTAGATTGGGAATGAAC-CCGT
777 GCCGATCCTGCT-GCTGCA-AC-C-CCTGTTCTG-GTCAGATCTTAGACTGGGAATGAACTCCGT
* * *
20975692 ATGCCTAAGCCAGACCGAAGAAAACGAGCGGGCTGGCGGAG-TGGCGGGCACTACGTCGGCCAGA
837 ATGCCTAAGCCA-ACCGACG-AAACGAGC-GGC-GGCGG-GCGGGCGGGCACTACGCCGGCCAGA
20975756 GA
897 GA
** * * *
20975758 GATAGGATGCGCAAGCCGTTGGATCGATACGATGGTAGGTGGGTTTATGCAGCATCTTCAATATT
1 GACGGGATGCGCAAGCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCA-CATCTTC-ATATT
*** * ** *
20975823 TCTATGTGCCATTTGCCGATTTTTATCCACTTGT-AATTCATACAATGGTCCCTTAAGCCTTCAT
63 TCTGCATGCCA-ATGCC-ATTTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * ** *
20975887 GTGAAGTTTCCACCGGCAAGACAACCCGTTTTCCCTATTTTTTCATGATTTTCAAAACTTTTTGT
125 GTGAAGTTT-CA-TGGCAAGACGACTCGTTTT--CTA-TTTTTCATGATTTTTGAAACTTTTTGC
** * * *
20975952 GGTTCATGATTTTATTAAAATTTTTTCAGAAGAGAGTTTTGGCCCCAAAGCTTGGAAGACGTAAT
185 GGTTCGGGATTTT-TTAAAATTTTTTCGGAAG-GAGTTTTGGCCCCAAA-CTTGGTAGACGTGAT
*
20976017 CCTTGTACTTTTGTTGGCCATGCA-AAAAAAATTCAGCCTAAAAACTCGAAGTGTACAAGATTTT
247 CCTTGTATTTTTGTTGG-CATGCACAAAAAAATTCAG-CTAAAAACTCGAAGTGTACAAGATTTT
*
20976081 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAA
310 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * * * *
20976146 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTTCGATGAGGCATAGGGGGCTAATAT
375 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* *
20976211 AAGGGCCAAGTACCAGAACCCATCGCACATCATGTACGCACACCCCCCTCCTGGCCCCCCGATCG
440 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCC-CC-GGCCCCCCGATCG
* * *
20976276 TCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT-CCCCTACGAAGA
501 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * *
20976340 AAAATGCGGCACCAGCACCTGCCCGAGCCCAGCGTGTGCTACCGTAA----C---CC--TCGATC
566 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCGATC
20976396 -----C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
631 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * *
20976445 CGAAACAAACGTGTGGGCGCTCAGCCGGCCAGAGGGGAGGGATCCGCAAATCGGGGATCGACT-G
696 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC-AAGCGGGGATCGGCTGG
* * * *
20976509 GTCCCCCTCTGCCTGCTGCCGATCCTGTTGCTGCAACCCTCAG-TCTGGTCCGATCTTAGACTGG
760 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCTGCAACCC-CTGTTCTGGTCAGATCTTAGACTGG
* * *
20976573 GAATGAACTCTGTATGCCTAAGCGAATCGACGAAACGAGC-G-GGC--G-GGG-GGGCACTACGC
824 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGC
*
20976632 CGGCTAGAGA
889 CGGCCAGAGA
* *
20976642 GACGAGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
20976707 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTAAAG
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * *
20976772 TTTCATGGCAA-A-GACTCGTTTTTTATTTTTCATGATTTTTAAAAC-TTTTGCTGTTCGAGATT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
* *
20976834 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGGCGTGATCCTTGTATTTTTGT
196 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
20976899 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAAAA
261 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
20976964 AGTGT-CCCATTTCAGACACTTTAATGTCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTT
326 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
20977028 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCCAACATAAGGGCCAAGTACCAG
391 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
20977093 CACCCATCGCACATCATTTGCAC-CACCCCCCGGCCCCCCGATTGTCGGAACCCCAATGCCGCCG
456 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCG
* *
20977157 GTTAGG---T-------T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACTAGCACAT
521 GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
** * **
20977211 GCCTAAGCACAGCATGTGCTGTAGCAA-CC-C--T-C-G--G-TC-----C-------G-A-TCC
586 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCC
* *
20977253 G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGTGC
651 GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * * * * * * **
20977316 TTAGTCGGCCAGAGGGGCGGGATGTGCGAGTCGGGGATCGACCGGTTCCCCCTCTGTGTGCTGTT
716 TCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCC
* * * *
20977381 GATCCTGTTGCTGCAACTCTCAG-TCTGGTCCA-ATCTTAGACTAGGAATGAACTCCGTATGCCT
780 GATCCTGCTGCTGCAAC-CCCTGTTCTGGT-CAGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
20977444 AAGCCAACCGATGAAACGAGC-G-GGCGGGCGGGCGGGTACTACGTCGGCCAGAGA
843 AAGCCAACCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* * *
20977498 GACGGGACGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
20977563 ACATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAG
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
** * * * ** * *
20977628 TTTCGCGGCAAGACGACTCATTTTCTATTATTCACGATTTTCAAAACTTTTTTCGGATT-AGGAT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG-TTCGGGAT
* * * * ** * *
20977692 TTTTTTAATTTTTTTTGGATGGAGTTTTGTTCCCAAACTTGGTAGACATGATCCTTGTATTTTTT
195 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
20977757 TTGGCTTGCA-AAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
260 TTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* * * *
20977821 AAAATGTCCGCATTTTATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
324 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
20977886 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACC
389 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
20977951 AGCACCCATTGCACATCATGTGCACACACGCCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCC
454 AGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCC
* ** * * ** * **
20978016 GTCGGTCAGGTTCTAGGGTGATGCTTCGGTGATGGTGCCCCTG-CAAAGAAAAATGAAGCACCAG
517 GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAG
* * * * * *
20978080 CACATGCCCGATCCCATCATGTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGATTGGGAATG
581 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATG
* * * *
20978145 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCAAGAAACAAGCGTAC
645 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * *
20978210 GGGTGCTCAACCGGCTAGAGGGGCGGGATGCGCAAGCTGGCGATCGG-TCGGGTCCCTCTCTACG
710 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGCT-GGGTCCCCCTCTGCG
* * * * ** *
20978274 TGTTGCCGATCCTACTGCTGCAA-CCCTCATTCCGGTTTGATCTTAGACTGGGAATGGACTCCGT
773 TGCTGCCGATCCTGCTGCTGCAACCCCT-GTTCTGGTCAGATCTTAGACTGGGAATGAACTCCGT
* * * *
20978338 ATACCTAAGCCAACCGATGAAACGAGCGGGGGGCGGGCGGGCGGGCACTACGCCGGGCAGAGA
837 ATGCCTAAGCCAACCGACGAAACGAGC-GGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
** * * *
20978401 GACGGGATGCGCAAATCGTGGATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCGTATATCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
20978466 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAG
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * *
20978531 TTTCATGGCAAGACGACTCATTTTCTATTTTCCATGATTTTTGAAACTTTTTGCGGTTCGAGATT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
* * * **
20978596 TTTTAAAATTATTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGACAAGATCCTTGTATTTTTGT
196 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * * * *
20978661 T-G---G--C---AAATTTCAGCTAAAAACTCAAAGTATATAAGATTTTGTGGCCATTGGAAAAA
261 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
20978717 AGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
326 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * ** *
20978782 TAAGGGGGTGTGAGTTCTCGAGGCTTGATGAGGCATAGGGCTCCAATATAAGGGCCAAATACCAG
391 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * ** * * *
20978847 CACCCATCGCATATCATGTGTGTACAACCCCCCCAACCCCCCGATCGTCGAAACCCCAATGCTGT
456 CACCCATCGCACATCATGTGCGCAC-A-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGC
* * * ** * *
20978912 CGATTAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCCCTACGAAGAAAAATGCGGCACCAGCAA
519 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * * * *
20978977 ATGCCAGAGCCTAGCATGTGCTACCGCAACACTCGGTCCGATCCGATCCTAGATTGGGAATGAAC
584 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAAC
* * * * **
20979042 TCCGTATCCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACAAAACGAGCGTGCAAG
648 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * *
20979107 CGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGACTGGGCCCCCCTCTGCGTGCT
713 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCTGGGTCCCCCTCTGCGTGCT
* * ** *
20979172 GCCGATCTTGCTACTGCAACCCCTGTTCTAATCAGATCTTAGACTGGGAATGAACTCTGTATGCC
777 GCCGATCCTGCTGCTGCAACCCCTGTTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCC
*
20979237 TAAGCCAACCGACGAAACGAGCTGGCAGGCGGGCGGGCGGGCACTACGCCGGCTAGAGA
842 TAAGCCAACCGACGAAACGAGC-GGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* *
20979296 GACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
*
20979361 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAG
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * **
20979426 TTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCAAGATT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
** *
20979491 TTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGT
196 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
20979556 TGGCATGCACAAAAAAATTTAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAA
261 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
20979621 AGTGTCCCCATTTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTT
326 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
20979686 TAAGGGGGTGTGAGTT-TCCGAGGTTTGATGATGGATAGGTGGCCAATATAAGGGCCAAGTACCA
391 TAAGGGGGTGTGAGTTCT-CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
20979750 GCACCGATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCGATCGTCGGAACTCCAATGCCGC
455 GCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGC
* * * **
20979815 CGGTTAGGTTCTCCGGTGATACTCCGACGATGGTGCCCCGACGAAGAAAAATGTTGCACCAGCAC
519 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAC
* * * * * * **
20979880 ATGCCCGAGCCTAGCATCTACTGTCGTAACCCGCGGTCCAATCCGATCTTAGACTGGGAATGAAC
584 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAAC
* * *
20979945 TTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGG
648 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * * *
20980010 CGCTCAACCGACCAAAGTGGCGGGATGTGTAAGCCGAGGATCGGTCT-GGTCCCCCTCTGTGTGC
713 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGG-CTGGGTCCCCCTCTGCGTGC
** * * * * *
20980074 TGCTAATCCTGCTGCTGTATCCCTCAG-TCTGATCCA-ATCTTAGGCTGGGAATGAACTCCGTAT
776 TGCCGATCCTGCTGCTGCAACCC-CTGTTCTGGT-CAGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
20980137 GGCTAAGCCAACCGACGAAACGAGC-G-GGTGGGCGGGCGGGCACTACGCCGGCCACATA
839 GCCTAAGCCAACCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
** *
20980195 GACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
20980260 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CTATCACGTGAA
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT-TCACGTGAA
*
20980324 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGAT
130 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAT
* *
20980389 TTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
195 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
** * *
20980454 TTGGTGTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAA
260 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
20980519 AAGTGTCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCT
325 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
20980584 TTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCA
390 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* ** *
20980649 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCACCCCCGATCGCCGGAACCGAAATACCG
455 GCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCG
** * * **
20980714 CCAATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCA
518 CCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* **
20980779 CTTGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAA
583 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAA
* * * * * * *
20980844 CTCCTTATGCTTAGACTGGGAATGAACTTCATATGCCTAAGTAAACCCACAAAATGAGCTTGCGG
647 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
** * * * * * * *
20980909 GCGCTCAGTAGGCCAGAGGGGCAGGATGCGTAAGCTAGGGATCGGTTGAGTCTCCCTCTACGTGC
712 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGCTGGGTCCCCCTCTGCGTGC
** * * * ** * **
20980974 TATCAATCTTGCTGCCGCAACCCTCTG-TCCAGTCCGATCTTAGACTGGGAATGAACTTTGTATG
776 TGCCGATCCTGCTGCTGCAACCC-CTGTTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * *
20981038 CCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCATGCGGCCATTACGCCGGCCAAAGA
840 CCTAAGCCAACCGACGAAACGAGC-GGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
** * * *
20981099 GATAGGATGCGTAAGACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * * * * *
20981164 ACGTGCCAATACCATTTTTATGCCTTGTAAATTCATACAACGGGCCCTTAAGCCTTCACGTGAAG
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * * *
20981229 TTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGGTT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
* * * **
20981294 TTTGAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGACGCGATCCCAGTATGTTTT-
196 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTG
*
20981358 TTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
260 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
20981423 AAGTGTCCACATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCT
325 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
20981488 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
390 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
** *
20981553 GCACCCATTACACATCATGGGCGCACACCCCGCCCGGCCCCCCGATCGTCGGAACCCCAATGCCG
455 GCACCCATCGCACATCATGTGCGCACA-CCC-CCCGGCCCCCCGATCGTCGGAACCCCAATGCCG
* * ** ** * *
20981618 TCGGTCAGGCTCTCTAGCGATGCTTCCGGTGATGGTGCCCCGACAAAGAAAAATGCAGCACCAGC
518 CCGGTCAGGTTCTCCGGCGATGC-TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * ** * * *
20981683 ACTTGCCCGAGCCCAGCATGTGC-GACCGTAACCCTTGGTCTAGTCTAATTTTAGATTGGGAATG
582 ACATGCCCGAGCCCAGCATGTGCTG-CCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATG
* * * * *
20981747 AACTCCGTTTTCCTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTAC
645 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * ** *
20981812 GGTCGCTCAACCGACCAGAGGGGCGGGATGTGCATGCTTAGGATCGG-TCGGGTCCCCCTCTGCA
710 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGCT-GGGTCCCCCTCTGCG
* * * *
20981876 TGCTGCCGATCTTGCTACTGCAACCCTCAGTT-TGATCCA-ATCTTAGACTGGGAATGAACTCCG
773 TGCTGCCGATCCTGCTGCTGCAACCC-CTGTTCTGGT-CAGATCTTAGACTGGGAATGAACTCCG
* *
20981939 TATGCCTAAGCCAACCGACAAAACGAGCGAC--CGGGCGGGCGGGCACTACGTCC-GCCAGAGA
836 TATGCCTAAGCCAACCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACG-CCGGCCAGAGA
* *
20982000 GACGGGACGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * * * *
20982065 TCATTCCAATGCCATTTTTACGGCTTGTAAATTAATATAATGGTCCCTTAAGCCTTCACGTGAAG
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * *
20982130 TTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTTAAACTTTTTGCAGTTCAGGATT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
* * *
20982195 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCTCAAACTTGGTAGACATGATCCTTGTATTTTTTT
196 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
20982260 TGGCATGTACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAA
261 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
20982325 AGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
326 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
20982390 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAG
391 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
20982455 CACCCATCGCACATCATGTGCACACACCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGCCA
456 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCG
*
20982520 GTCAGGTTCTCCGGCGATGCTCCGAGGATGGTGCCCCCG-CGAAGAAAAATGCGGCACCAGCACA
521 GTCAGGTTCTCCGGCGATGCTCCGACGATGGTG-CCCCGACGAAGAAAAATGCGGCACCAGCACA
* * *
20982584 TGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
585 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACT
* * * * * * * * * *
20982649 CCTTGTGCTTAGACTGGGAATGAAGTTCATATGCCTAAGTCAACCTACAAAATGAACGTGCGAGC
649 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
** * * * *
20982714 GCTCAGCCGGCCAGAGGGGCGGGATGCATAAGCCAGGGATC-GATCGAGTCCCCCTCTGCATGCT
714 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCT-GGGTCCCCCTCTGCGTGCT
* ** * * *
20982778 GTCGATCCTGCTGCCACAA-CCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
777 GCCGATCCTGCTGCTGCAACCCCT-GTTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGC
* * * ***
20982842 CTAAGCCAACTGATGAAATGAGCGGGCGGACGGGCACACGGGCACTACGCCGGCCAGAGA
841 CTAAGCCAACCGACGAAACGAGC-GGCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGA
** * *
20982902 GATAGGATGCGGAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
20982967 GCGTGCCAATGCCATTTTTATGGCTTGTAAAGTCGTACAATAGG-CCCTTAAGCCTTCACGTGAA
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT-GGTCCCTTAAGCCTTCACGTGAA
* *
20983031 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGAT
130 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAT
* *
20983096 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTT
195 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
20983161 TTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
260 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
20983226 GAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
325 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
** * **
20983291 TTAAGGGGGTGTGAGTTCTAAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACTG
390 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
20983356 GCACCCATCGCACATCATGGGTGCACACCCCGCTCGGCCCGCCCGATCATCGGAACCTCAATGCC
455 GCACCCATCGCACATCATGTGCGCACACCCC-C-CGGCCC-CCCGATCGTCGGAACCCCAATGCC
* * * ** * *
20983421 GCCGGTCAAGCTCTCCGGTGATGCTCCGGTGATGGTGCCTCGACGAAGAAAAATGCGGCAACAGC
517 GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * * * *
20983486 ACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCAGTCTGATTTTAGACTGGGAATGA
582 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGA
* * * * *
20983551 ACTTCGTATGCTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCG
646 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* *
20983616 GTCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-TCGGGTCCCCCTCTGCGT
711 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCT-GGGTCCCCCTCTGCGT
* * *
20983680 GCTGCCTATCTTGCTGCTACAACCCCTGCTT-TGGTCAGATCTTAGACTGGGAATGAACTCCGTA
774 GCTGCCGATCCTGCTGCTGCAACCCCTG-TTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTA
* *
20983744 TGCCTAAGCCAACCGACGAAACGAGC-G-GGCGGGCGGGCGGGCGCTATGCCGGCCAGAGA
838 TGCCTAAGCCAACCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
*
20983803 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
20983868 GCTTGCCAATGCCATTCTTATGGCTTGTAAATTCGTACAATAGG-CCCTTAAGCCTTCACGTGAA
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT-GGTCCCTTAAGCCTTCACGTGAA
* *
20983932 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGAT
130 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAT
* * *
20983997 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCCTGTATTTTTT
195 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
*
20984062 TTGGCATGCACAAAAAACTTCAAG-TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
260 TTGGCATGCACAAAAAAATTC-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
*
20984126 AAAGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
324 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
20984191 TTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
389 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * ** *
20984256 AGCACCCATCGCACATCATGGGCGCACACCCTGCTCGACCCGCCCGATCACCGGAACCTCAATGC
454 AGCACCCATCGCACATCATGTGCGCACACCC--CCCGGCCC-CCCGATCGTCGGAACCCCAATGC
* * *
20984321 CGCCGGTCAGGCTCTCCGGTGATGCTCC-AGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
516 CGCCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* * * *
20984385 GCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCAGTCTGATTTTAGACTGGGAAT
580 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAAT
* * * *
20984450 GAACTTCGTATGCTTAGACTAGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTG
644 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* ** * *
20984515 CGGTCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGG-TCGGGTCCCTTTCGGT
709 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGCT-GGGTCCCCCTCTGC
* * * * * ** *
20984579 GTGCTGCCAATCTTGCTACTACAACCCCTATTCCAGTCAGATCTTAGACTGGGAATGAACTCTGT
772 GTGCTGCCGATCCTGCTGCTGCAACCCCTGTTCTGGTCAGATCTTAGACTGGGAATGAACTCCGT
* * * * * **
20984644 ATGCCTAAGCCAACGGACGAAACAAGTGGGCGGGCGGACGGGCGGGCACTACGTCGGGTAGAGA
837 ATGCCTAAGCCAACCGACGAAACGAG-CGGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* *
20984708 GACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
20984773 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CTATCACGTGAA
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT-TCACGTGAA
* * * *
20984837 GTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTGGAAACTTTTTGTGGTTCAGGAT
130 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGAT
* *
20984902 TTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTG
195 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
20984967 TTGGCATGCACAAAGAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTT-TGACCATTTGAAAA
260 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
20985031 AAGTGTCCCCATTTCAGACAGTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCT
325 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
20985096 TTAAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCC
390 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CC
* **
20985161 A-CACCCATCGAACATCATGTGCGCACACCCCCCTGTCGGCCCCCCGATCACCGGAACCCCAATG
454 AGCACCCATCGCACATCATGTGCGCACA-CCCCC---CGGCCCCCCGATCGTCGGAACCCCAATG
* * * * *
20985225 CCGCCGGTCAGGTTTTCCGACGATGCTTCTACGATGGTGCCCC-AGCGAAGAAAAATACGGCACC
515 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACC
* * * * **
20985289 AACACATGCCCGAGCCCAGCATGTGCTGCCGCAACGCTCAGTCTGACCCGATCTTAGACTGGGAA
579 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG-GTCGATCTTAGACTGGGAA
* * * * * ** * *
20985354 TGGACTGCTTATGCTTAGAATGGAAATGAACTTTGTATGCCTAAGTCAACCCATGAAAAGAGCGT
643 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * *
20985419 GCGGGTGCTCAGTCGGCCAGAGGGGCGAGATGCGCAAGCTAGTGATCAGCCGGGTCCCCCCTTTG
708 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGGCTGGGT-CCCCCTCTG
* * * *
20985484 CGTGCTGCCAATCCTACTGCCGCAACCCTTGGTT-TGGTCCA-ATCTTAGACTGGGAATGAACTC
771 CGTGCTGCCGATCCTGCTGCTGCAACCCCT-GTTCTGGT-CAGATCTTAGACTGGGAATGAACTC
* *
20985547 CGTATGCCTAAGCCAACTGACGAAACGAGC-G-GGCGGGCGGGCGGGCACTATGCCGGCCAGAGA
834 CGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
*
20985610 GACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
20985675 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAG
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * * **
20985740 TTTCATGGCAAGACGACTCATTTTCTATTTTTCAGGATTTTCGAAACTTTTTTGCGATTTGAAAT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTGCGGTTCGGGAT
* *
20985805 TTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTG
195 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
20985870 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTGGAAAA
260 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* ***
20985935 AAGTGTCCCCATTTCATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTGGATGCTCT
325 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * * * *
20986000 TTAAGGGGATGCGAGTTCTCGAGGTTTGATAAGGGATAAGGGGCCAATATAAGGGCCAGGTACCA
390 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * * *
20986065 GTACCCATCACACATCATGTGCGCACACCCGCCCTTGCCCCCCTGATCATCGAAACCCCAATGCC
455 GCACCCATCGCACATCATGTGCGCACACCC-CCC-GGCCCCCC-GATCGTCGGAACCCCAATGCC
* * * *
20986130 ACCGATCAGGTTCT-C--C---G----G-CGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGC
517 GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* * *
20986184 ACATGACCGAGCCTAGCATGTGCTGCCACAA-CC-C--T-C-G--G---TT---C---G---G--
582 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAA
* * *
20986227 -TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCATGAAACGAGCGTACGG
647 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * *
20986289 GCGCTCAGGCGGCCAGAGAGGTGGGATGCACAAGTCGGGGATCGG-TCGGGTCCCCCTCTGTGTG
712 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGGCT-GGGTCCCCCTCTGCGTG
* * * * ** * *
20986353 CTGTCAATCTTGCTACTATAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
775 CTGCCGATCCTGCTGCTGCAACCC-CTGTTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTAT
* * * * *
20986417 GCCTAAGCCAACCGATGAAATGAGCATGCGGGCTGGCGGGCGGGCACTACTCCGGCCAGAGA
839 GCCTAAGCCAACCGACGAAACGAGC-GGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
* * * *
20986479 GACGGGATGCGCAAGCCGTCGATCAATAGGGTGGCAAGTGGGTTTAGGCACATCTTCATATTTCT
1 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
20986544 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
66 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * *
20986609 TTTCATTGCAAGATGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATT
131 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
* *
20986674 TTTTAAAATTTTTTTGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
196 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
20986739 TGGCAT-C-CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAA
261 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
20986802 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
326 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
20986867 TAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
391 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
20986932 CACCCATCGCACATCATGTGCGCACA-CCCCCGGCCCCCCGATCGTCGAAACCCCAATACCGCCG
456 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCG
* * ** * *
20986996 GTCAGGTTCTCCGACGATGCTCC-AGCGATGGTGCCTCGGGGAAGAAAAATGTGGCACCAACACA
521 GTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACA
* * * *
20987060 TGCCCGAGCCCAGCATGTGCTGCCACATCCCTCGGTCTGGTCTGACCTTAGACTGGGAATGAACT
585 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACT
* * * **
20987125 CTGTATGCTTAGACTGGGAATGAA-TCCGTATCCCTAAGTCAACCCACGAAACAAGCGTGTAGGC
649 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * *
20987189 GCTCAGCCGGCCGGAGAGACGGGATGCGCAAGC
714 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
20987222 CGTGCATCGA
Statistics
Matches: 11552, Mismatches: 1399, Indels: 571
0.85 0.10 0.04
Matches are distributed among these distances:
849 1 0.00
850 14 0.00
851 143 0.01
852 94 0.01
853 4 0.00
854 1 0.00
855 3 0.00
856 146 0.01
857 1 0.00
858 35 0.00
859 125 0.01
860 139 0.01
861 38 0.00
862 33 0.00
863 53 0.00
864 5 0.00
865 87 0.01
866 444 0.04
867 148 0.01
868 125 0.01
869 213 0.02
870 36 0.00
871 42 0.00
872 73 0.01
873 91 0.01
874 66 0.01
875 26 0.00
876 6 0.00
877 52 0.00
878 16 0.00
879 62 0.01
880 6 0.00
881 16 0.00
882 41 0.00
883 49 0.00
884 53 0.00
885 46 0.00
886 192 0.02
887 6 0.00
888 47 0.00
889 2 0.00
890 2 0.00
891 30 0.00
892 469 0.04
893 134 0.01
894 522 0.05
895 284 0.02
896 7 0.00
897 18 0.00
898 489 0.04
899 581 0.05
900 488 0.04
901 1303 0.11
902 680 0.06
903 1467 0.13
904 1065 0.09
905 1136 0.10
906 93 0.01
907 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCG
GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTGCCG
ATCCTGCTGCTGCAACCCCTGTTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
CCAACCGACGAAACGAGCGGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGA
Found at i:20978159 original size:26 final size:26
Alignment explanation
Indices: 20978130--20978179 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
20978120 CTGATCCGAT
*
20978130 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
20978156 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
20978180 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:20979051 original size:25 final size:25
Alignment explanation
Indices: 20979018--20979068 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
20979008 CTCGGTCCGA
*
20979018 TCCGATCC-TAGATTGGGAATGAAC
1 TCCGATCCTTAGACTGGGAATGAAC
20979042 TCCGTATCCTTAGACTGGGAATGAAC
1 TCCG-ATCCTTAGACTGGGAATGAAC
20979068 T
1 T
20979069 TCATATGCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
24 4 0.17
25 4 0.17
26 16 0.67
ACGTcount: A:0.27, C:0.22, G:0.24, T:0.27
Consensus pattern (25 bp):
TCCGATCCTTAGACTGGGAATGAAC
Found at i:20979963 original size:26 final size:26
Alignment explanation
Indices: 20979927--20979979 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
20979917 CCAATCCGAT
20979927 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
20979953 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
20979979 C
1 C
20979980 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:20980878 original size:26 final size:26
Alignment explanation
Indices: 20980827--20980879 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20980817 CCAATCTGAT
*
20980827 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
20980853 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
20980879 C
1 C
20980880 CTAAGTAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:20981371 original size:904 final size:901
Alignment explanation
Indices: 20977256--20987221 Score: 13030
Period size: 901 Copynumber: 11.1 Consensus size: 901
20977246 CCGATCCGAT
* * * * * *
20977256 CTTAGACTGGGAATGAACTCCGTATGCCTTAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * ***
20977321 CGGCCAGAGGGGCGGGATGTGCGAG-TCGGGGATCGACCGGTTCCCCCTCTGTGTGCTGTTGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCT-AGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATC
* * * * * *
20977385 CTGTTGCTGCAACTCTCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
130 TTGCTGCTGCAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
20977450 ACCGATGAAACGAGCGGGCGGGC-GG-GCGGGTACTACGTCGGCCAGAGAGACGGGACGCGCAAG
195 ACCGACGAAACGAGCGGGCGGGCGGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
20977513 CCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTACATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * **
20977578 TTTTGTGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCGCGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * ** * * * *
20977643 ACTCATTTTCTATTATTCACGATTTTCAAAACTTTTTTCGGATT-AGGATTTTTTTAATTTTTTT
390 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG-TTCGGGATTTTTTAAAATTTTTT
* * ** * * *
20977707 TGGATGGAGTTTTGTTCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCTTGCA-AAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
20977771 AACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCGCATTT
519 AA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
20977836 TATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
20977901 GTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
20977966 TCATGTGCACACACGCCCCCCGGCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTCAGGTTCTA
713 TCATGTGCGCACAC-CCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * * ** *
20978031 GGGTGATGCTTCGGTGATGGTGCCCCTG-CAAAGAAAAATGAAGCACCAGCACATGCCCGATCCC
777 CGGCGATGCTCCGGCGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * * *
20978095 ATCATGTGCTACCGCAACCCTCGGTCTGATCCGATCTTAGATTGGGAATGAACTCCGTATG
841 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
20978156 CTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCA-AGAAACAAGCGTACGGGTGCTCAA
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACA-AAACGAGCGTGCGGGCGCTCAG
* * * * *
20978220 CCGGCTAGAGGGGCGGGATGCGCAAGCT-GGCGATCGGTCGGGTCCCTCTCTACGTGTTGCCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCTAGG-GATCGGTCGGGTCCCCCTCTGCGTGCTGCCAAT
* * * ** * *
20978284 CCTACTGCTGCAACCCTCAT-TCCGGTTTGATCTTAGACTGGGAATGGACTCCGTATACCTAAGC
129 CTTGCTGCTGCAACCCTC-TGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
20978348 CAACCGATGAAACGAGCGGG-GGGCGGGCGGGCGGGCACTACGCCGGGCAGAGAGACGGGATGCG
193 CAACCGACGAAACGAGCGGGCGGGCGGGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
** * * *
20978412 CAAATCGTGGATCGATAGGGTGGTAGGTGGGTTAAGGCACATCTTCGTATATCTGCATGCCAATG
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
20978477 CCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTGAAGTTTCATGGCAA
321 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
20978542 GACGACTCATTTTCTATTTTCCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTA
386 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
* * **
20978607 TTTCAGAAGGTGTTTTGGCCCCAAACTTGGTAGACAAGATCCTTGTATTTTTGTT-G---G--C-
451 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * * * * *
20978665 --AAATTTCAGCTAAAAACTCAAAGTATATAAGATTTTGTGGCCATTGGAAAAAAGTGTCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
20978728 TTCAGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * ** *
20978793 GAGTTCTCGAGGCTTGATGAGGCATAGGGCTCCAATATAAGGGCCAAATACCAGCACCCATCGCA
646 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * ** * * * * *
20978858 TATCATGTGTGTACAACCCCCCCAACCCCCCGATCGTCGAAACCCCAATGCTGTCGATTAGGTTC
711 CATCATGTGCGCAC-ACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * * *
20978923 TCTGGCGATGCTCCGGTGATGGTGCCCCTACGAAGAAAAATGCGGCACCAGCAAATGCCAGAGCC
775 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * * * *
20978988 TAGCATGTGCTACCGCAACACTCGGTCCGATCCGATCCTAGATTGGGAATGAACTCCGTATC
840 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* **
20979050 CTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACAAAACGAGCGTGCAAGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * *
20979115 CGGCCAGAGGGGCGGGATGCGTAAG-TCGGGGATC-GACTGGGCCCCCCTCTGCGTGCTGCCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGCT-AGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCAAT
* ** * *
20979178 CTTGCTACTGCAACCC-CTGTTCTAATCAGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
129 CTTGCTGCTGCAACCCTCTG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
20979242 CAACCGACGAAACGAGCTGGCAGGCGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCA
193 CAACCGACGAAACGAGCGGGCGGGCGGGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
*
20979307 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
256 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
*
20979372 CCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
321 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * **
20979437 GACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCAGTTCAAGATTTTTTAAAATTT
386 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTT
** *
20979502 TTTCAAAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
451 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
20979567 AAAAAATTTAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
516 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
20979632 TTCAGACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
581 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
20979697 GAGTT-TCCGAGGTTTGATGATGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCGATCGC
646 GAGTTCT-CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
20979761 ACATCATGTGTGCACACCCCCCCGGCCCCCCGATCGTCGGAACTCCAATGCCGCCGGTTAGGTTC
710 ACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * * **
20979826 TCCGGTGATACTCCGACGATGGTGCCCCGACGAAGAAAAATGTTGCACCAGCACATGCCCGAGCC
775 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * * * ** * *
20979891 TAGCATCTACTGTCGTAACCCGCGGTCCAATCCGATCTTAGACTGGGAATGAACTTCGTATG
840 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
20979953 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
20980018 CGACCAAAGTGGCGGGATGTGTAAGC-CGAGGATCGGTCTGGTCCCCCTCTGTGTGCTGCTAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCTAG-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATC
* * * * * * * *
20980082 CTGCTGCTGTATCCCTCAGTCTGATCCAATCTTAGGCTGGGAATGAACTCCGTATGGCTAAGCCA
130 TTGCTGCTGCAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
20980147 ACCGACGAAACGAGCGGGTGGGC-GG-GCGGGCACTACGCCGGCCACATAGACGGGATGCGCAAG
195 ACCGACGAAACGAGCGGGCGGGCGGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
** *
20980210 TTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
20980275 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CTATCACGTGAAGTTTCATGGCAAGAC
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT-TCACGTGAAGTTTCATGGCAAGAC
*
20980339 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * ** *
20980404 CGGAAGGTGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGTGTGCATAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
20980469 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
20980534 AGACACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGATGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
20980599 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * **
20980664 CATGTGCGCACACCCCCCCGGCACCCCCGATCGCCGGAACCGAAATACCGCCAATCAGGTTCTCC
714 CATGTGCGCACACCCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** *
20980729 GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACTTGCCCGAGCCCAG
778 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** *
20980794 CATGTGCTGCCGCAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCTTATG
843 CATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20980853 CTTAGACTGGGAATGAACTTCATATGCCTAAGTAAACCCACAAAATGAGCTTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * **
20980918 AGGCCAGAGGGGCAGGATGCGTAAGCTAGGGATCGGTTGAGTCTCCCTCTACGTGCTATCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCT
* ** **
20980983 TGCTGCCGCAACCCTCTGTCCAGTCCGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * ** *
20981048 CCGATGAAACGAGCGGGCGGGCGGGCATGCGGCCATTACGCCGGCCAAAGAGATAGGATGCGTAA
196 CCGACGAAACGAGCGGGCGGGCGGGC--GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
20981113 GACGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATACCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * * *
20981178 TTTTTATGCCTTGTAAATTCATACAACGGGCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
20981243 GACTTGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTTGGGGTTTTTGAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * ** *
20981308 CGGAAGAAGTTTTGGCCCCAAACTTGGTAGACGCGATCCCAGTATGTTTT-TTGGCATGCATAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAA
*
20981372 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
20981437 AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
**
20981502 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTACACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
20981567 TCATGGGCGCACACCCCGCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGCTCTC
713 TCATGTGCGCACACCCC-CCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * * * *
20981632 TAGCGATGCTTCCGGTGATGGTGCCCCGACAAAGAAAAATGCAGCACCAGCACTTGCCCGAGCCC
777 CGGCGATGC-TCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * ** * * * * *
20981697 AGCATGTGC-GACCGTAACCCTTGGTCTAGTCTAATTTTAGATTGGGAATGAACTCCGTTTT
841 AGCATGTGCTG-CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20981758 CCTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGTCGCTCAA
1 CTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * *
20981822 CCGACCAGAGGGGCGGGATGTGCATGCTTA-GGATCGGTCGGGTCCCCCTCTGCATGCTGCCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGC-TAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAAT
* * * * *
20981886 CTTGCTACTGCAACCCTCAGTTTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CTTGCTGCTGCAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** *
20981951 AACCGACAAAACGAGCGACCGGGC-GG-GCGGGCACTACGTCC-GCCAGAGAGACGGGACGCGCA
194 AACCGACGAAACGAGCGGGCGGGCGGGCGCGGGCACTACG-CCGGCCAGAGAGACGGGATGCGCA
* * *
20982013 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATTCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * *
20982078 ATTTTTACGGCTTGTAAATTAATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
20982143 CGACTTGTTTTCTATTTTTCATGATTTTTTAAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* * * *
20982208 TCGGAAGGAGTTTTGGCCTCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGTACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
20982273 AAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
20982338 CAGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
20982403 GTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
20982468 TCATGTGCACACA-CCCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCC
713 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
20982532 GGCGATGCTCCGAG-GATGGTGCCCCCG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
778 GGCGATGCTCCG-GCGATGGTG-CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
20982595 AGCATGTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCTTGTG
841 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
20982656 CTTAGACTGGGAATGAAGTTCATATGCCTAAGTCAACCTACAAAATGAACGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
** * * * * * * *
20982721 CGGCCAGAGGGGCGGGATGCATAAGCCAGGGATCGATCGAGTCCCCCTCTGCATGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCT
** * * *
20982786 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAA
131 TGCTGCTGCAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** *
20982851 CTGATGAAATGAGCGGGCGGACGGGCACACGGGCACTACGCCGGCCAGAGAGATAGGATGCGGAA
196 CCGACGAAACGAGCGGGCGGGCGGG--CGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
20982916 GCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
20982981 TTTTTATGGCTTGTAAAGTCGTACAATAGG-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 TTTTTATGGCTTGTAAATTCATACAAT-GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
20983045 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* *
20983110 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCACAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
20983175 AAACTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
20983240 CAGACTCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
** * **
20983305 GTTCTAAAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACTGGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
20983370 TCATGGGTGCACACCCCGCTCGGCCCGCCCGATCATCGGAACCTCAATGCCGCCGGTCAAGCTCT
713 TCATGTGCGCACACCCC-CCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
20983435 CCGGTGATGCTCCGGTGATGGTGCCTCGACGAAGAAAAATGCGGCAACAGCACATGCTCGAGCCC
776 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
20983500 AGCATGTGCTGCCGTAACCCTTGGTCCAGTCTGATTTTAGACTGGGAATGAACTTCGTATG
841 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
20983561 CTTAGACTAGGAATGAACTCCCTATGCCTAAGCCAACCCACGAAACAAGCGTGCGGTCGCTCAGT
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
** *
20983626 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCTATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCT
* * *
20983691 TGCTGCTACAACCC-CTGCTTTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCTGCAACCCTCTG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
20983755 ACCGACGAAACGAGCGGGCGGGC-GG-GCGGGCGCTATGCCGGCCAGAGAGACGGGATGCGCAAG
195 ACCGACGAAACGAGCGGGCGGGCGGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
20983818 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCTTGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
20983883 TCTTATGGCTTGTAAATTCGTACAATAGG-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
325 TTTTATGGCTTGTAAATTCATACAAT-GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
20983947 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * *
20984012 CGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCACAAAA
454 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
20984077 AACTTCAAG-TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
519 AAATTC-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
20984141 CAGACTCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
20984206 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * ** * *
20984271 TCATGGGCGCACACCCTGCTCGACCCGCCCGATCACCGGAACCTCAATGCCGCCGGTCAGGCTCT
713 TCATGTGCGCACACCC-CCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
20984336 CCGGTGATGCTCCAGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
776 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
20984401 AGCATGTGCTGCCGTAACCCTTGGTCCAGTCTGATTTTAGACTGGGAATGAACTTCGTATG
841 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** *
20984462 CTTAGACTAGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGTCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* ** * *
20984527 CGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCTTTCGGTGTGCTGCCAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCT
* * * ** * *
20984592 TGCTACTACAACCC-CTATTCCAGTCAGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 TGCTGCTGCAACCCTCT-GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * **
20984656 ACGGACGAAACAAGTGGGCGGGCGGACGGGCGGGCACTACGTCGGGTAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGGGCGGGCGG--GCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
20984721 AGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
20984786 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CTATCACGTGAAGTTTCATGGCAAG
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT-TCACGTGAAGTTTCATGGCAAG
* * * *
20984850 ACGACTTGTTTTCTATTTTTCATGATTTTGGAAACTTTTTGTGGTTCAGGATTTTTTAAAATTTT
387 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* *
20984915 TTCGGAAGGAGTTTTAGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20984980 AGAAATTCAGCTAAAAACTCCAAGTGTACAAGATTTT-TGACCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
20985044 TCAGACAGTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
20985109 AGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCCA-CACCCATCGAA
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CCAGCACCCATCGCA
**
20985173 CATCATGTGCGCACACCCCCCTGTCGGCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAGGT
711 CATCATGTGCGCACACCCCCC---CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * ** * *
20985238 TTTCCGACGATGCTTCTACGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAACACATGCCCGA
773 TCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * ** * * * *
20985302 GCCCAGCATGTGCTGCCGCAACGCTCAGTCTGACCCGATCTTAGACTGGGAATGGACTGCTTATG
837 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
20985367 CTTAGAATGGAAATGAACTTTGTATGCCTAAGTCAACCCATGAAAA-GAGCGTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA-CAAAACGAGCGTGCGGGCGCTCAG
* * * * * *
20985431 TCGGCCAGAGGGGCGAGATGCGCAAGCTAGTGATCAGCCGGGTCCCCCCTTTGCGTGCTGCCAAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTCGGGT-CCCCCTCTGCGTGCTGCCAAT
* * * * *
20985496 CCTACTGCCGCAACCCT-TGGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CTTGCTGCTGCAACCCTCT-GTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
20985560 CAACTGACGAAACGAGCGGGCGGGC-GG-GCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCA
193 CAACCGACGAAACGAGCGGGCGGGCGGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
20985623 AGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
20985688 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * * **
20985753 CGACTCATTTTCTATTTTTCAGGATTTTCGAAACTTTTTTGCGATTTGAAATTTTTTAAAATTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTGCGGTTCGGGATTTTTTAAAATTTT
* *
20985818 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
452 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
20985883 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTGGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *** * *
20985948 TCATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTGGATGCTCTTTAAGGGGATGCG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
20986013 AGTTCTCGAGGTTTGATAAGGGATAAGGGGCCAATATAAGGGCCAGGTACCAGTACCCATCACAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** * * * *
20986078 ATCATGTGCGCACACCCGCCCTTGCCCCCCTGATCATCGAAACCCCAATGCCACCGATCAGG---
712 ATCATGTGCGCACACCC-CCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
20986140 T-------T-CTCCGGCGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGACCGAGCC
775 TCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* *
20986197 TAGCATGTGCTGCCACAA-CC-C--T-C-G---G---TT---C---G---G---TCCG-AT-
840 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * ** * *
20986233 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCATGAAACGAGCGTACGGGCGCTCAGG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
20986298 CGGCCAGAGAGGTGGGATGCACAAG-TCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGTCAATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCT-AGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATC
* ** * *
20986362 TTGCTACTATAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TTGCTGCTGCAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * ** * *
20986427 ACCGATGAAATGAGCATGCGGGCTGGCGGGCGGGCACTACTCCGGCCAGAGAGACGGGATGCGCA
195 ACCGACGAAACGAGCGGGCGGGC-GG-GCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
20986492 AGCCGTCGATCAATAGGGTGGCAAGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
20986557 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
20986622 TGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* *
20986687 TTGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-C-CAAA
453 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
20986750 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
20986815 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
20986880 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
20986945 TCATGTGCGCACA--CCCCCGGCCCCCCGATCGTCGAAACCCCAATACCGCCGGTCAGGTTCTCC
713 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * ** * *
20987008 GACGATGCTCCAGCGATGGTGCCTCGGGGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAG
778 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
20987073 CATGTGCTGCCACATCCCTCGGTCTGGTCTGACCTTAGACTGGGAATGAACTCTGTATG
843 CATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * **
20987132 CTTAGACTGGGAATGAA-TCCGTATCCCTAAGTCAACCCACGAAACAAGCGTGTAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
* * *
20987196 CGGCCGGAGAGACGGGATGCGCAAGC
66 CGGCCAGAGGGGCGGGATGCGCAAGC
20987222 CGTGCATCGA
Statistics
Matches: 7977, Mismatches: 952, Indels: 275
0.87 0.10 0.03
Matches are distributed among these distances:
862 27 0.00
863 10 0.00
864 1 0.00
865 96 0.01
866 280 0.04
867 4 0.00
868 82 0.01
869 185 0.02
871 1 0.00
872 1 0.00
873 63 0.01
874 3 0.00
875 1 0.00
877 2 0.00
879 1 0.00
880 2 0.00
882 1 0.00
883 1 0.00
885 2 0.00
888 2 0.00
890 1 0.00
891 2 0.00
892 62 0.01
893 6 0.00
894 501 0.06
895 278 0.03
896 1 0.00
897 4 0.00
898 333 0.04
899 560 0.07
900 503 0.06
901 1307 0.16
902 661 0.08
903 730 0.09
904 1028 0.13
905 1137 0.14
906 98 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCTAGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCT
TGCTGCTGCAACCCTCTGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
GTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:20981787 original size:26 final size:26
Alignment explanation
Indices: 20981734--20981787 Score: 72
Period size: 26 Copynumber: 2.1 Consensus size: 26
20981724 AGTCTAATTT
* * *
20981734 TAGATTGGGAATGAACTCCGTTTTCC
1 TAGACTGGGAATGAACTCCGTATGCC
*
20981760 TAGACTGGGAATGAACTCTGTATGCC
1 TAGACTGGGAATGAACTCCGTATGCC
20981786 TA
1 TA
20981788 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.24, T:0.31
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCC
Found at i:20983586 original size:26 final size:26
Alignment explanation
Indices: 20983536--20983587 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20983526 CAGTCTGATT
* * *
20983536 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTAGGAATGAACTCCCTATGC
20983562 TTAGACTAGGAATGAACTCCCTATGC
1 TTAGACTAGGAATGAACTCCCTATGC
20983588 CTAAGCCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCCTATGC
Found at i:20984487 original size:26 final size:26
Alignment explanation
Indices: 20984437--20984488 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
20984427 CAGTCTGATT
* * *
20984437 TTAGACTGGGAATGAACTTCGTATGC
1 TTAGACTAGGAATGAACTCCCTATGC
20984463 TTAGACTAGGAATGAACTCCCTATGC
1 TTAGACTAGGAATGAACTCCCTATGC
20984489 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCCTATGC
Found at i:20987878 original size:26 final size:26
Alignment explanation
Indices: 20987840--20987892 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20987830 CCAGTCTGAT
* *
20987840 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20987866 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20987892 C
1 C
20987893 CTAACCTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20988766 original size:26 final size:26
Alignment explanation
Indices: 20988730--20988782 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20988720 CTGGTCTGAT
*
20988730 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCATATG
*
20988756 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAGGAACTCCATATG
20988782 C
1 C
20988783 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCATATG
Found at i:20989483 original size:895 final size:893
Alignment explanation
Indices: 20987202--20993243 Score: 8030
Period size: 895 Copynumber: 6.7 Consensus size: 893
20987192 CAGCCGGCCG
* * *
20987202 GAGAGACGGGATGCGCAAGCCGTGCATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** *
20987267 TTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCT
66 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * ** * * *
20987332 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA-GGATTTTCGAAACTTTTTTGCGATTT
131 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAAATTTT-GAAAC-TTTTTACGGTTC
* *
20987396 GAAATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTAT
194 G-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
20987461 TTTTGGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
258 TTTT-GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
20987526 CGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAA
322 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* **
20987591 TACTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAGCAGGCCAATATAAGGGCCA
387 TGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * *
20987655 AGTACCAGCACCCATTGCACATCATATGCGCACACCCCACTGGCCCCCCCGTTCGCCGGAACCCC
451 AGTACCAGCACCCATCGCACATCATGTGCG--CA---CAC---CCCCCTCGATCGCCAGAACCCC
* * * *
20987720 AATGCCGTCGGTCAAGTTCTCCGACGATGCTCTGGCGATGGTGCCCCGACGAAGAATAATGCGGC
508 AATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
* * ** *
20987785 ACCAGAACATGCCCTAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCTGATCTTAGACTGG
573 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGG
* * *
20987850 GAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAA-CCTAACCCACGAAACGA
638 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC-AACCCACGAAACGA
* * * * * *
20987914 GCGTGCGGGCGCTTAGTCGGCCAAAGGGGCGGGATGCGCAAGCTGGGGATCAG-CTGGGTCCCCC
702 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCAGTC-GGGTCCCCC
* * * **
20987978 TCTGCGTGCTGCCGATCTTGCTACCGCAACCCTTGGTCTT-GTCCAATCTTAGACTGGGAATGAA
766 TCTGCGTGCTGTCGATCTTGCTGCTGCAACCC-TGGT-TTGGTCTGATCTTAGACTGGGAATGAA
* * *
20988042 CTCCATATGCCTAAGCCAACCGATGGAACGA---G-CGGGCGGGCGGGCGGGCACTACGTCCGCC
829 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGGGCGGGCGGGCACTACG-CCGCC
20988103 A
893 A
20988104 GAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
20988169 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
20988234 GAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCACAAATTTTGAAACTTTTTA-GGTTCGG
131 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAAATTTTGAAACTTTTTACGGTTCGG
* * *
20988298 TATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATCT
196 -ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
20988363 TTGTTGGTATGCACAAAAAAATTCAACTAAAAACCCGAAGTGTACAAGATTTTGTGACCATTTGA
260 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
20988428 AAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGAAGTAAACCTGTAAAATCTCAAATGC
325 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
20988493 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTA
390 TCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** * * *
20988558 CCAATACCCATCGCACATCATGTTCGCACACCCCCCT-GATTGCCAGAACCCCAATGTCGTCGGT
455 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGATCGCCAGAACCCCAATGCCGTCGGT
** *
20988622 CAGGTTCTCCAACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
520 CAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * *
20988687 CTGAGCCCAGCATGTGCTGTCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAGGAACTCCG
585 CCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * *
20988752 TATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACTAACGTGCGGGCGAT
650 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
20988817 CAGCAC-GCCAGAGGGGTGGGATGCGCAACCCGGGGATCAGTCGGGTGCCCTTCTGCATGCTGTC
715 CAGC-CGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGTC
20988881 GATCTTGCTGCTGCAACCCATGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
779 GATCTTGCTGCTGCAACCC-TGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
*
20988946 GCCAACCGACAAAACGAGCGGCCGGGCGGGCGGGCGGGCACTACGTCCGCCA
843 GCCAACCGACGAAACGAGCGGCCGGGCGGGCGGGCGGGCACTACG-CCGCCA
* *
20988998 GAGAGACGGGACACACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
20989063 TTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
*
20989128 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAAATTTTGAAACTTTTTACGATTCGG
131 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAAATTTTGAAACTTTTTACGGTTCGG
* *
20989193 TATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATCT
196 -ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
20989258 TTGTTGGCATGCATAAAAAAATTCAGCTAAAACCCCGAAGTGTACAAGATTTTGTGACCATTTGA
260 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
20989323 AAAAAATGTCCCCATTTCAGACAATTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
325 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
20989388 TCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTA
390 TCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* *
20989453 CCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGATTGCCAGAACCCTAATGCCGTCGGT
455 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGATCGCCAGAACCCCAATGCCGTCGGT
* * * *
20989517 CAGGTTCTCCGACGTTGCTCCGGCGATGGTGCCCCAACGAAGAAAAATGTGGCACCAGCACATGC
520 CAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
* * * *
20989582 CCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAAGGAACTCCG
585 CCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCG
* * * * *
20989647 TATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACTAACGTGCGGGCGAT
650 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
20989712 CAGCAC-GCCAGAGGGGTGGGATGCGCAACCCGGGGATCAGTCGGGTGCCCTTCTGCATGCTGTC
715 CAGC-CGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGTC
20989776 GATCTTGCTGCTGCAACCCATGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
779 GATCTTGCTGCTGCAACCC-TGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
20989841 GCCAACCAACAAAATGAGCGGCCGGACGGGTGGGCGGGCACTACATCCACCA
843 GCCAACCGACGAAACGAGCGGCCGGGCGGGCGGGCGGGCACTAC-GCCGCCA
* * * *
20989893 GAAAGACGAGACGTGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * *
20989958 TTCTGCATGCCAATGCCATTTTTTTGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACAT
66 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
20990023 GAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGG
131 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAAATTTTGAAACTTTTTACGGTTCGG
20990088 TATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TT
196 -ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
20990152 TTGTTGGCAAGAACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGA
260 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
20990217 AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATGTCAAATGC
325 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
20990282 TCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGT
390 TCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
20990346 ACCAGCACCCATCGCGCATCATGTGCGCACACCCCCCCGGCCCGCTCGATCGTCGGATCCCCAAT
454 ACCAGCACCCATCGCACATCATGTGCGCACA-----CC--CCC-CTCGATCGCCAGAACCCCAAT
* * * * * **
20990411 ACCGCCGATCAGGTTCTTCGGCGATGCTCCAGCGATGGTGCCCCGGGGAAGAAAAATGCGGCACC
511 GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * *
20990476 AACACATGCCCGAGCCCAGCATGTGCTGCCACATCCCTCGGTCTGGTCTGACCTTAGACTGGGAA
576 AGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAA
* * * *
20990541 TGAACTCTGTATGCTTAGACTGGGAATGAA-TCTGTATCCCTAAGTCAACCCATGAAACGAGCGT
641 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* ** * * * * * *
20990605 GTGGGCGCTCAATCGGCCA-AAGGGTCGGGATGCACAAGCAGAGGATCGGCCGGGTCCCCCTCTA
706 GCGGGCGCTCAGCCGGCCAGAGGGGT-GGGATGCACAAGCCGGGGATCAGTCGGGTCCCCCTCTG
* * * * * *
20990669 CTTGCTGCCGATCTTGCTGCTGGAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCA
770 CGTGCTGTCGATCTTGCTGCTGCAACCCT-GGTTTGGTCTGATCTTAGACTGGGAATGAACTCCG
* *
20990734 TTTGCCTAAGCCAACCGACGAAACGA--------GCGGGCGGGCGGGCACTACGCCGACCG
834 TATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGGGCGGGCGGGCACTACGCCG-CCA
* * * * *
20990787 GAGAGACGGGATGCACAAGCCGTGCATCGATAGTGTGGTAGGTGGGTTGAGGCACATCTTCATAT
1 GAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
20990852 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCT
66 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * ** * * *
20990917 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCAGGATTTTTGAAAGTTTTTACGGTTTGA
131 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAAATTTTGAAACTTTTTACGGTTCG-
* * *
20990982 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCCCAAACTTGGTTGACGTGATCCTTGTATTT
195 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
20991047 TTATTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
260 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
20991112 AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGC
325 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
20991177 TCTTTAAGGTGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAGTGGGCCAATGTAAGGGCCAAGT
390 TCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
20991241 ACCAGCACCCATCGCACATCATGTGCGGACACCCCCTGGCCCCCTCGATCGCCGGAACCCCAATG
454 ACCAGCACCCATCGCACATCATGTGC-G-CA--CAC---CCCCCTCGATCGCCAGAACCCCAATG
* * ** * *
20991306 TCGCCGGTCAGGTTCTCCGGCGATGCTTTGGTGATGGTGCCTC-AGCGAAGAAAAATGCGGCACC
512 CCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACC
* * * * ** *
20991370 AGAACAGGCCCTAGCCCAGCATGTGATGCCGTAACCCTCGGTCTAGTCCGATCTTAGACTGGGAA
576 AGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAA
* *
20991435 TGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGT
641 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * *
20991500 GCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAGGGATCAGTCGGGTCCCCCTCTAC
706 GCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCAGTCGGGTCCCCCTCTGC
*
20991565 GTGCTGTCGATCTTGCTGCTGCAACCCTCGGTCTTGTTC-GATCTTAGACTGGGAATGAACTCCG
771 GTGCTGTCGATCTTGCTGCTGCAACCCT-GGT-TTGGTCTGATCTTAGACTGGGAATGAACTCCG
* *
20991629 TATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCTGGCGGGCGGGCGGGCACTACGCCGGTCA
834 TATGCCTAAGCCAACCGACGAAACGAGCGG-C---CGGGCGGGCGGGCGGGCACTACGCC-GCCA
* * *
20991694 GAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCTTAT
1 GAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
20991759 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCCTAAGCCTTCATGT
66 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* ** * *
20991824 GAAGTTTCATGGCAAGATGACCCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACCGTTCGA
131 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAAATTTTGAAACTTTTTACGGTTCG-
* * *
20991889 GATTTTTT-AAATTTTTTCGGAAGGACTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTT
195 GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
20991953 TTGTT-G---G--C-------TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
260 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
20992005 AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACTTGTAAAATCTCAAATGC
325 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
20992070 TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
390 TCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * **** *
20992135 CCAGCACCCATCGCACATCATGTGCACACACCCCCTGGCCCCCCCGATCATTGGAACCCCAATAC
455 CCAGCACCCATCGCACATCATGTGCGCACA----C---CCCCCTCGATCGCCAGAACCCCAATGC
* * * *** * **
20992200 CGTCGGTTAGGTTCTCCTGTGATGCTCTAACGATGGTGCCCC-AGTGAAGAAAAATATGGCACCA
513 CGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCA
* * *
20992264 GCACATGCCCGAGCCCAGCCTGTGCTGCCACAACCTTCGGTCCAGTCTGATCTTAGACTGGGAAT
577 GCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAAT
* * * *
20992329 GAACTCCGTATGCTTAGACTGGGAATGAACTCTGCATGCTTAAGTCAACCGACGAAACGAGCGTG
642 GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
** *
20992394 CGGGCGCTCAGCCAACCAGAGGGGTGGGATGCACAAGCCGGGGATC-GACCGGGTCCCCCTCTGC
707 CGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCAG-TCGGGTCCCCCTCTGC
* * * * ** * ** *
20992458 GTGTTGTCGATCCTACTG-TCACAACCCTCATTCTGATCCAATCTTAGACTGGGAATGAACTCCT
771 GTGCTGTCGATCTTGCTGCT-GCAACCCTGGTT-TGGTCTGATCTTAGACTGGGAATGAACTCCG
* * ** * * *
20992522 TATACCTAAGACAACCGACGAAACGAGCGGGTGGGCGAGCGGGCGGGCACTATGCTGGCCA
834 TATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGGGCGGGCGGGCACTACGC-CGCCA
* *
20992583 GAGAGACGGGACGCGCACGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
1 GAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
20992648 TTCTACGTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
66 TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * * **
20992712 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT-GATTTTCAAAAAATTTTACGGTT-G
131 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAAATTTT-GAAACTTTTTACGGTTCG
* * *
20992775 AAGATTTTTTAAAATTTTTTGGAAAGGAGTTTTGGCCCCAAACTTGGTACACATGATCCTTGTAT
195 --GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
20992840 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAACTGTACAAGATTTTGTGACCATTT
258 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * * * * *
20992905 AAAAAAAGTGTTCCCATTTCAGACACTTTAATTGCTACTGGAAGCAAACTTATAAAATCTCAAAT
323 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
20992970 GCTCTTTAAGAGGGTGTGAGTTCTTGAGGGTTGATGAGGGATA-GGGGCCAATATAAGGGCCGAG
388 GCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
20993034 TACCAGCAGCCATCGTACATCATGTGCGCACACCCCCCGACCCCCCGATCACC-GAAACCCCAAT
453 TACCAGCACCCATCGCACATCATGTGCGCACA----CC--CCCCTCGATCGCCAG-AACCCCAAT
* * * * * * *
20993098 GCCGTTGGTCAGGATCTCCGGCAATGCTCCGGCGATGGTACCCCGATGAAG-AAAATGCAGCATC
511 GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * * * * *
20993162 AGCACATGCACGAGCCCAGCATGTGTTGCCATAACCCTCAGTCCAGTCTAATCTTAGACTGGGAA
576 AGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAA
*
20993227 TGAACTCCATATGCTTA
641 TGAACTCCGTATGCTTA
20993244 AGTCAACCCA
Statistics
Matches: 4609, Mismatches: 447, Indels: 171
0.88 0.09 0.03
Matches are distributed among these distances:
887 5 0.00
888 100 0.02
889 158 0.03
890 315 0.07
891 11 0.00
892 7 0.00
893 513 0.11
894 831 0.18
895 1291 0.28
896 9 0.00
897 5 0.00
898 1 0.00
899 287 0.06
900 126 0.03
901 70 0.02
902 453 0.10
903 161 0.03
905 1 0.00
906 56 0.01
907 208 0.05
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
GAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
TTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATAAATTTTGAAACTTTTTACGGTTCGG
ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGATCGCCAGAACCCCAATGCCGTCGGTC
AGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
CGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGTGGGATGCACAAGCCGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGTCGA
TCTTGCTGCTGCAACCCTGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGACGAAACGAGCGGCCGGGCGGGCGGGCGGGCACTACGCCGCCA
Found at i:20989661 original size:26 final size:26
Alignment explanation
Indices: 20989625--20989677 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
20989615 CTGGTCTGAT
*
20989625 CTTAGACTGGGAAGGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCATATG
*
20989651 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAAGGAACTCCATATG
20989677 C
1 C
20989678 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCATATG
Found at i:20990557 original size:26 final size:25
Alignment explanation
Indices: 20990528--20990577 Score: 91
Period size: 26 Copynumber: 2.0 Consensus size: 25
20990518 CTGGTCTGAC
20990528 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAA-TCTGTATG
20990554 CTTAGACTGGGAATGAATCTGTAT
1 CTTAGACTGGGAATGAATCTGTAT
20990578 CCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.28, C:0.14, G:0.26, T:0.32
Consensus pattern (25 bp):
CTTAGACTGGGAATGAATCTGTATG
Found at i:20991451 original size:26 final size:26
Alignment explanation
Indices: 20991422--20991474 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
20991412 CTAGTCCGAT
*
20991422 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20991448 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
20991474 C
1 C
20991475 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:20992351 original size:26 final size:26
Alignment explanation
Indices: 20992315--20992370 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
20992305 CCAGTCTGAT
*
20992315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
20992341 CTTAGACTGGGAATGAACTCTGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
20992367 CTTA
1 CTTA
20992371 AGTCAACCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:21000674 original size:25 final size:26
Alignment explanation
Indices: 21000646--21000697 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21000636 CCGATCCGAT
21000646 CTTACACTGGGAA-GAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
* * *
21000671 CTTAGACTTGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
21000697 C
1 C
21000698 CTAAGGCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 11 0.48
26 12 0.52
ACGTcount: A:0.27, C:0.21, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:21001595 original size:26 final size:26
Alignment explanation
Indices: 21001544--21001596 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21001534 CCAGTTTGAT
*
21001544 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21001570 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
21001596 C
1 C
21001597 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21004781 original size:892 final size:891
Alignment explanation
Indices: 20998979--21006238 Score: 9019
Period size: 902 Copynumber: 8.1 Consensus size: 891
20998969 CATGACACCA
* * * * * ** ** *
20998979 GGGATCGGTCGAGTCCCCCACTGCATG-TAACTGATACTGCTATCGCAACCCTTAGTCCGATTGG
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTATC-GATCCTGCTGCCGCAACCCTCGGTCCGGTT-G
* * * * *
20999043 ATCTTAAACTGGGAATGAACTGCGTATGCCTAAGCCAACGGACCAAACGAGCGGGCGGACGGGCG
64 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCTGA------
* * *
20999108 GGCGGGCACTACGTCGACCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGC
123 -----GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
20999173 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAAT
183 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
20999238 GGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
248 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* *
20999303 TGAAACTTTTTATGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGT
313 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
20999368 TTGACGCGATCCTTGTATTTTTGTTGACATGCAAAAAAAAATTCAGCTAAAAACTC-ACGGTGTA
378 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA-AGTGTA
*
20999432 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTA
442 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * * *
20999497 AACCTGTAAAATTTGAAATGCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGG
507 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG
*
20999562 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAGGCACCC
572 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGC-CCC
* * *
20999627 -CCGATCGCCGGAACCCTAGTGCCGCCAGTCAGGTTCT-C--C-A------G-CGATGGTGCCCC
635 TCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
*
20999680 -ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-AGTC
700 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TC
* * * * * * *
20999743 TGGT-TGGATCTTAGACTGGGAATAAACTCCATATGCTTAGACTAGGAATGAACTCCGTGTGCCT
764 CGATCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCT
** * * * *
20999807 AAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAACTGGCCAGAGGGGCGGGATGCGCAAGCTG
828 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCG
** * * * * * * *
20999871 GGGATCGACCGGCTCCCCCTCTACATTCTACCGATCCTGCTGCTGCAACCCTCGGTCTGGTGTGA
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGT-TGA
* *
20999936 TCTTATACTGGGAATGAACTCCGTATG-CTGAAGCCAACCGACGAAATGAGCGGGCAGGCAAACA
65 TCTTAGACTGGGAATGAACTCCGTATGCCT-AAGCCAACCGACGAAACGAGC--G--GG----C-
* * * * * *** *
21000000 GGTGGGCACTATGCCGACCAGAGAGATGGGATGCGCAAGTTATGGATCGATAGGCTGGTAGGTGG
120 --TGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
21000065 GTTTAGGCACATCTTCATAATTCTACGTG-CAATGCCATTTTTATGGCTTGTAAATTCAAACAAT
183 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
21000129 GGTCCCTTAAGCCTTCATGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
248 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * *
21000194 CAAAACTTTTTACGGTTCGAGATTTTTTCAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTAG
313 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * *
21000259 TAGATGGGATCCTCGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTA
378 TAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
21000324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTATTGGCAGCA
442 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
21000389 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
507 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG
*
21000454 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACA--------CCCC-C
572 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTC
* * * * * * * * *
21000510 CGATCACCGGAACGCCAATGCCACTGGTCAGGTTCTACGGCGATGCTCTGGCGATGGTGCCTCGA
637 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * * * **
21000575 TGAAGAAAAATGCGGCACCAGCACATGCCCAAGCGCAGCATGTGCTACTACAACCCTCGATCCGA
702 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGA
* * *
21000640 TCCGATCTTACACTGGGAA-GAACTCCGTATGCTTAGACTT-GGAATGAACTTCGTATGCCTAAG
767 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
21000703 GCAACCAACGAAACGAGCGTGCGGGCACTCAGTCGGCCAGAGGGGCGGGATACGCAAGCCG
831 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCG
* * * * * * *** * **
21000764 GGGATCGGCCCGATCCCCCTCTGCGTGCTGTCGATTCTACTGCCATGACCCTCAGTCCGGTCCAA
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGT-TGA
* *
21000829 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGGTGG
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGC---TGA
*
21000894 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGTTGGGTTTA
123 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * *
21000959 GGCACACCTTCATATTTCTACGTGCGAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCC
188 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
21001024 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAAA
253 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * *
21001089 CTTTTTACGGTTGGGGATTTTTTAAAATTTTTT-GGCAAGGAGTTTTGGCCCAAAACTTGATAGA
318 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
21001153 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGA
382 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
21001218 TTTTCTGACCATTTGAAAAAAGTGTCCCCATTTTCAGACACTTTAATGGCTATTGGCAGCAAACC
447 TTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
21001283 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGCC
511 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCC
* * *
21001348 AATATAAAGGCTAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCCTCCGAT
576 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGAT
** ** *
21001413 CATCGGAACCCCAATGCCATCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
641 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
* * * * ** * *
21001478 GAAAAATGTGGCACCAACAAAT-CCCGAGCCTAGCATGTGCTGTTGCAACCCTCGGTCC-AGTTT
706 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGA-TCT
**
21001541 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTATATGCCTAAGTCAA
770 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
21001606 CCCACGAAACGAGTGTGCGGGAGCTCAGTCGGCCAGAGAGGCGGGATGCACAAGCCG
835 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCG
* * * * * *
21001663 GGGATCCACCGGGGATCGACCGGGTCCCTCGCTGCGTGCTATCGATCCTACTACCGTAATCCTCG
1 GGGAT----C--GG-T----CGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCG
* * * * * *
21001728 GTCTGGTCCGATCTTGGACTGGGAATGAATTCCGTATGCCTAACCCAATCGACGAAACGAGCGGG
55 GTCCGGT-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * *
21001793 CTG-GCACTACATCGGCCAGAGAGATGGGATACGCAAGCCGTCGATCGATACGGTGGTAGGTGGG
119 CTGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
21001857 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
184 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
21001922 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
249 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
21001987 GAAACTTTTTACGGTTCGGGATTTTTAAAAAATTTTT-GGCAAGGCGTTTTGGCCCCAAACTTGA
314 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCCCAAACTTGG
* * * *
21002051 TAGATGTGATCCTTGTATTTTT-TTCAGCATGCACAAAAAAACTCAGCTAAAAACTTGAAGTGTA
378 TAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
21002115 CAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCA
442 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
21002180 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGC
507 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAG-
* * ** *
21002244 GGGCCAATATAAGGGCCAAGTAACAGCACCCATTGCACATCATAAGCGCACACCCCCCGGCCCCC
571 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCT
* * * * * * *
21002309 CCGATCGTCAGAACCCCAATACCGCCAGTCAGGTTCTCCGACGATGCTCTGGCGATGGTACCCC-
636 CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
** * *
21002373 AGCGAAGAAAAATGCGGCACCAAAACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCT
701 A-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCC
* * * * * *
21002438 GATCTGATCTTAGATTGGGAATGAAGTCCGTTTGCATGGACTGGGAATGAACTCCGTATGCCTAA
765 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAA
* * * ** * *
21002503 GTCAACCCACGAAACGAGTGTCCGGGCACTCAATCGGCCAGAGTGGG-GAGATGCGTAAGTCG
830 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG-GGGCGAGATGCGCAAGCCG
* * * ** * *
21002565 GGGATCGATCGGGTCCCCCTCTACGTGCTA-CTGATCCTGTTGCTACAACCCTCGATCCGGTTCA
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTATC-GATCCTGCTGCCGCAACCCTCGGTCCGGTTGA
* *
21002629 TTCCTAGACTGGGAATGAACTCCGTATGCCCAAGCCAACCGACGAAACGAGCGGGCGGGCTGACT
65 -TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCTGA--
** * * *
21002694 GGCGGGCACTACG-CTGGCCAGAGAGACATGATGTGCAAGCCATGGATCGATAGGGTGGTAAGT-
123 -----GCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*** *
21002757 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAA
182 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
21002822 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTT
247 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
21002887 TTGAAGCTTTTTACGGTTTGGGATTTTTTAAAATTGTTTTGGGAA-GAGTTTTGGCCCCAAACTT
312 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
21002951 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGT
376 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
21003016 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACAGGCAAC
441 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
21003081 AAACCTGTAAATTCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGG
506 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAG
* *
21003146 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGTGCACACCCCCCGG-CCCT
571 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCT
** * * ** *
21003210 CCCGATCGCCGGAACCGTAATGCCGCCAGTCAAGTTCTCCGACGATGCTTAGGCGATGGTGCCCC
636 -CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * *
21003275 GACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCC
700 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCC
* * * * * * *
21003340 GGTCTGATCTTAGACTGGGAATCAACTCCATTTGCATGGACTGGGAATGAACTCCGTATGCCTAA
765 GATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAA
* * * * *
21003405 GTGAACCCACGTAACGAGCGTTCGGGCGTTCAGCCGGCTAGAGGGGCGAGATGCGCAAGCCG
830 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCG
* * * *
21003467 AGGAT-GGCTCGGGTCGCCCTCTACGTGCTATCGATCCTGCTGCCACAACCCTCGGTCCGGTTCG
1 GGGATCGG-TCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGTT-G
* * * *
21003531 ATCTTAGACTAGGAATGAACTCCGTATTCCTAAGCCAACTGACGAAATGAACGGACGGGCTGACC
64 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A--G-CGGGCTGA--
* *
21003596 GGCGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGGG
123 ----GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
***
21003661 TTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
184 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
21003726 GTCCCTTAAG-CTTCCACGTGAAGTTTCATGGCAGGACGACCCATTTTCTATTTTTTACGATTTT
249 GTCCCTTAAGCCTT-CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
** * * *
21003790 CAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGACCCCAAACTTGG
313 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* **
21003855 TAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATGAAGCTAAAAACTCGAAGTGTAC
378 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
21003920 AAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGAGACTTTAATGGCTACTGGCAGCAA
443 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
21003985 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAAGGG
508 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGG
*
21004050 GCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCTC
573 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCTC
* * **
21004115 CGATCACCGAAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
637 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * * **
21004180 CGAAGAAAAATGTGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGATCCTT
702 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGA
* * **
21004245 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGTTTGGTAATGAACTCTATATGCCTAAGT
767 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
* * * *
21004310 TAACCCACGAAATGAGTGTGCGGGCGCTCAGCCGGCTAGAGGGGCGAGATGCGCAAGCCG
832 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCG
* * * ** * * * **
21004370 GGGATCGGTCGGGTCCCTCGCTGCGTGTTATCGATCCTATTACTGTAACCCTCGGTTTGGTCTGA
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGT-TGA
* * * * *
21004435 TCTTAGAATGGGAATGAATTCTGTATGCCTAAGCCAACTGACGAAACGAGCAGGCT-AGCACTAC
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCTGAGCACTAC
* * *
21004499 GTCGGCTAGAGAGACGAGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
130 GTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
21004564 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGC
195 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
21004629 CTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTCTTGAAACTTTTTG
260 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTA
* * * * *
21004694 CGATTCGAGATTTTTTTAAATTTTTTCGGAATGAGTTCTGGTCCCAAACTTGGTAGACGTGATCC
325 CGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * * *
21004759 TTGTATTTTTGTTAGCATGCATAAAACAATTCAGCTAAAAACTTGATGTGTACAAGATTTTGTGA
390 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
21004824 CCATTTGAAAAAAGTCTCCCCATTTCAGACACATTAACGGCTACTGGCAGCAAACCTGTAAAATC
455 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
21004889 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGCCAATATAAGG
520 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGG
* * *
21004953 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCTGAG-TCCT-CGATCGTCGA
585 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCC-G-GCCCCTCCGATCGCCGG
* * * *
21005016 AACCCCAATGCCGCAGGTCAGGTTCTCC-AGCGATGCTTCGACGATGGTG-CCCAAGCAAAGAAA
647 AACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCCCGA-CGAAGAAA
* * * * * * *
21005079 AATGCGGCACCAGCACATGCCTGAGCCCATCATGTGCTACC-TAACCCTTGGTCC-AGTCCGATC
710 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGA-TCTGATC
* *
21005142 TTAGACTGCGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
774 TTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * *
21005207 CGAAACGAGCGTGCGGACGCTCAGTCGGCCAGAGGTGC-AGGATGCGCAAGTCG
839 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-GATGCGCAAGCCG
* * * * * * **
21005260 TGGATCAGTCAGGTCCCCCTCTGCGTGCTGTTGATCCTGCTGCCGCAACCCTCAGTCCAATTCGA
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGTT-GA
* * * * *
21005325 TCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACC-ACCAAACAAGCGGGCGGGCGGGCAG
65 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-C-GA-AA-CGAGCGGGC-TG-A-
*
21005389 GCACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
123 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
21005454 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCC
188 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
**
21005519 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAA
253 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
21005584 -TCTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
318 CT-TTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* **
21005647 ACATGATCCTTGTATTTTTGTTGGCATGCGTAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
381 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
21005712 ATTTTGTGACCATTTGAAAAAAGTGTCCACATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
446 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
21005777 TGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT-AGGGGAC
511 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG-C
* *
21005841 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCC-GCCCCCCCGA
575 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGA
* *
21005905 TCGCCGGAACCCCAATGCCGCCGGTGAGG-T-T----C--T--T-CGACGATGGTGCCTCGACGA
640 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * ** ** * ** * *
21005959 AGAAAAATGTGACAGTATTACATGCCCGAGCCCAGCATGTGCTGTCAAAACCCTTGTTCCGATCT
705 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCT
* *
21006024 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
770 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
21006089 CCCACGAAATGAGTGTGTGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCG
835 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCG
* * * * * ** * * **
21006146 GGGATCGGCCGAGTCCCCCTCTGCATGCTACCGATCCTACTGCCATAACCCGCGATCCAATCTGA
1 GGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGT-TGA
* *
21006211 TCATAGACTGGGAATAAACTCCGTATGC
65 TCTTAGACTGGGAATGAACTCCGTATGC
21006239 TTAGACTGGG
Statistics
Matches: 5577, Mismatches: 661, Indels: 266
0.86 0.10 0.04
Matches are distributed among these distances:
882 33 0.01
883 2 0.00
885 50 0.01
886 197 0.04
887 2 0.00
888 1 0.00
889 150 0.03
890 523 0.09
891 417 0.07
892 773 0.14
893 206 0.04
894 77 0.01
895 14 0.00
896 34 0.01
897 426 0.08
898 103 0.02
899 179 0.03
900 4 0.00
901 299 0.05
902 1600 0.29
903 383 0.07
904 9 0.00
905 2 0.00
906 6 0.00
910 87 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
GGGATCGGTCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCCGCAACCCTCGGTCCGGTTGAT
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCTGAGCACTACG
TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
TTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC
GGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGCCGGAACC
CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCG
Found at i:21005180 original size:26 final size:26
Alignment explanation
Indices: 21005141--21005193 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21005131 CCAGTCCGAT
*
21005141 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
* *
21005167 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
21005193 C
1 C
21005194 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:21006056 original size:26 final size:26
Alignment explanation
Indices: 21006027--21006079 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21006017 CCGATCTGAT
*
21006027 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21006053 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21006079 C
1 C
21006080 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21006250 original size:26 final size:26
Alignment explanation
Indices: 21006214--21006264 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21006204 AATCTGATCA
21006214 TAGACTGGGAATAAACTCCGTATGCT
1 TAGACTGGGAATAAACTCCGTATGCT
*
21006240 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATAAACTCCGTATGC
21006265 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCGTATGCT
Found at i:21006332 original size:185 final size:185
Alignment explanation
Indices: 21006020--21006352 Score: 513
Period size: 185 Copynumber: 1.8 Consensus size: 185
21006010 CCTTGTTCCG
* *
21006020 ATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
1 ATCTGATCATAGACTGGGAATAAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* ** * *** *
21006085 TCAACCCACGAAATGAGTGTGTGGGTGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
66 TCAACCCACGAAACGAACGTGCGACCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGA
*
21006150 TCGGCCGAGTCCCCCTCTGCATGCTACCGATCCTACTGCCATAACCCGCGATCCA
131 TCGACCGAGTCCCCCTCTGCATGCTACCGATCCTACTGCCATAACCCGCGATCCA
*
21006205 ATCTGATCATAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
1 ATCTGATCATAGACTGGGAATAAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
* * *
21006270 TCAACCCACGGAACGAACGTGCGACCGCTCAATCGGCCAGATGGGCGGGATGCACAAGCCGGGGA
66 TCAACCCACGAAACGAACGTGCGACCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGA
* *
21006335 TCGATCGGGTCCCCCTCT
131 TCGACCGAGTCCCCCTCT
21006353 ACGTGTTGCC
Statistics
Matches: 131, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
185 131 1.00
ACGTcount: A:0.25, C:0.28, G:0.28, T:0.20
Consensus pattern (185 bp):
ATCTGATCATAGACTGGGAATAAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAACGTGCGACCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGA
TCGACCGAGTCCCCCTCTGCATGCTACCGATCCTACTGCCATAACCCGCGATCCA
Found at i:21007164 original size:26 final size:26
Alignment explanation
Indices: 21007112--21007164 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21007102 CTTGTCCGAT
*
21007112 CTTAAACTGGGAATGAGCACCGCATG
1 CTTAAACTGGGAATGAACACCGCATG
* * *
21007138 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACACCGCATG
21007164 C
1 C
21007165 CTAAGTCATC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACACCGCATG
Found at i:21007878 original size:26 final size:26
Alignment explanation
Indices: 21007849--21007901 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21007839 CCGATCTGAT
*
21007849 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
21007875 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21007901 C
1 C
21007902 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21007878 original size:737 final size:736
Alignment explanation
Indices: 21006407--21007932 Score: 2263
Period size: 737 Copynumber: 2.1 Consensus size: 736
21006397 CTTAGAATGT
* * * * *
21006407 GAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCAGGCACTACGCCG
1 GAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGA----AC-GGCGGGCAGGCACTACGCCG
* * *
21006472 GCTAGAGAAATGGGATGCACAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTTGGTACATCTTC
61 GCTAGAGAAACGGGATGCACAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
21006537 ATATTTTTGCATGTCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTCC
126 ATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCC
* *
21006602 ACGTGAAGTTTCATGCCAAGACAACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
191 ACCTGAAGTTTCATGCCAAGACAACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGT
* *
21006667 TTAAGATTTTTTAAAATTTTTTTGGAAGGATTTTAGGCCCCAAACTTGGTCGACGTTATCCTTGT
256 TTAAGATTTTTTAAAATTTTTTTGGAAGGATTTTAGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
21006732 ATTTTTGTTGGCATGCATAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
321 ATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCAT
* *
21006797 TTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
386 TTGAAAAAAATGCCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAA
* * * * *
21006862 ATGCTCTTTAAGGGGGTGTGAGTTCTCGCGGTTTGATGAGGGATAACGGGCCAATATAAGGGCCA
451 ATGCTCTTTAAGGGGGTGTGAGTTCCCACGGTTTGAGGAGAGATAACGGGCCAATATAAAGGCCA
* * * *
21006927 AGTACCAGCACCCATCGCACATCATGTGTGAACACCCGCCCGGCCCCCCCGATCGTCGGAACCCC
516 AGTACCAGCACCCATCGCACATCATGTGCGAACACCCCCCCGGCCCCCCCGATCGCCGAAACCCC
* * *
21006992 AATACCGCCGATCAAGTTCTCCGGTGATGCTCCGACGTTGGTGCCCCGGGAAAGAAAAATGCGGC
581 AATACCGCCGATCAAGTTCTCCGGTGATGCTCCGACGATGGTGCCACGCGAAAGAAAAATGCGGC
* * *
21007057 ACCAGCACATGCCCGAGCCCGGCATGTGCTGCCGCAACCCTCAGTCTTGTCCGATCTTAAACTGG
646 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTCGTCCGATCTTAAACTGG
* *
21007122 GAATGAGCACCGCATGCTTAGACTGG
711 GAATGAACACCGCATGCTTAGACTAG
* *
21007148 GAATGAACTCCGTATGCCTAAGTCATCCCACGAAACGAACAGGCGGGCAGGCACTACGCCGGCTA
1 GAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAAC-GGCGGGCAGGCACTACGCCGGCTA
* * * * *
21007213 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCCCATCTTTATAT
65 GAGAAACGGGATGCACAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** * *
21007278 TTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCT
130 TTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACCT
* * *
21007343 GAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTGA
195 GAAGTTTCATGCCAAGACAACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTAA
*
21007408 GATTTTTTAAATTTTTTTTAGG-AGGATTTTAGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
260 GATTTTTTAAAATTTTTTT-GGAAGGATTTTAGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
21007472 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTG
324 TTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTG
* * * *
21007537 AAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTAGCGGCAAACTTGTAAAATCTCAAATG
389 AAAAAAATGCCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATG
*
21007602 CTCTTTAAGGGGGTGTGAGTTCCCACGGTTTGAGGAGAGATAGCGGGCCAATATAAAGGCCACA-
454 CTCTTTAAGGGGGTGTGAGTTCCCACGGTTTGAGGAGAGATAACGGGCCAATATAAAGGCCA-AG
* *
21007666 TATCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGG-CCCCCCGATCGCCGAAACCCCA
518 TACCAGCACCCATCGCACATCATGTGCGAACACCCCCC-CGGCCCCCCCGATCGCCGAAACCCCA
* * *
21007730 ATACCGCCGGTCAAGTTCTCCGGTGATGCTCTGGCGATGGTGCCACGACG-AAGAAAAATGCGGC
582 ATACCGCCGATCAAGTTCTCCGGTGATGCTCCGACGATGGTGCCACG-CGAAAGAAAAATGCGGC
* * * *
21007794 ACCAGCACATGCCCTAGCCTAGCATGTGCTGCCACAACCCTC-GATC-CGATCTGATCTTAGACT
646 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAG-TCTCG-TCCGATCTTAAACT
* *
21007857 GGGAATGAACTCCGTATGCTTAGACTAG
709 GGGAATGAACACCGCATGCTTAGACTAG
* *
21007885 GAATGAACTCTGTATGCCTAAGTCAACCCAAGAAATGAACGTGCGGGC
1 GAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAACG-GCGGGC
21007933 GCTCAGCCGG
Statistics
Matches: 706, Mismatches: 72, Indels: 18
0.89 0.09 0.02
Matches are distributed among these distances:
736 3 0.00
737 663 0.94
738 7 0.01
741 33 0.05
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (736 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCAAGAAACGAACGGCGGGCAGGCACTACGCCGGCTAG
AGAAACGGGATGCACAAGCCGTGGATCGAAAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTCCACCTG
AAGTTTCATGCCAAGACAACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTTAAG
ATTTTTTAAAATTTTTTTGGAAGGATTTTAGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
TGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAA
AAAAATGCCCCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAGGGGGTGTGAGTTCCCACGGTTTGAGGAGAGATAACGGGCCAATATAAAGGCCAAGTAC
CAGCACCCATCGCACATCATGTGCGAACACCCCCCCGGCCCCCCCGATCGCCGAAACCCCAATAC
CGCCGATCAAGTTCTCCGGTGATGCTCCGACGATGGTGCCACGCGAAAGAAAAATGCGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCTCGTCCGATCTTAAACTGGGAATG
AACACCGCATGCTTAGACTAG
Found at i:21009522 original size:26 final size:26
Alignment explanation
Indices: 21009484--21009536 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21009474 CCAATCTGAT
*
21009484 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
21009510 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21009536 C
1 C
21009537 CTAAGTCAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21009579 original size:734 final size:733
Alignment explanation
Indices: 21008083--21009608 Score: 2172
Period size: 734 Copynumber: 2.1 Consensus size: 733
21008073 ACAAAATGAG
* * * * *
21008083 CGAGCGGGCGGGCGGGCACTATGCCGGTCAGATAGACGGGATGCGCAAGCCATGGATCGATAGGG
1 CGAGCAGGCGGGC-AGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGG
*
21008148 TGGTAGGTGGGTTTAAGCACATCTTCATATTCCTACATGCCAATGCCATTTTTATGGCTTGTAAA
65 TGGTAAGTGGGTTTAAGCACATCTTCATATTCCTACATGCCAATGCCATTTTTATGGCTTGTAAA
* * * *
21008213 TTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
130 TTCATACAATGGTCCCTTAAACCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
* * *
21008278 TCACAATTTTTGAAATTTTTAGGTTCGAGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCC
195 TCACAATTTTTGAAATTTTGAGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCC
*
21008343 AAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCTTGCAAAAAAAAATTCAGCTAAAAACTCG
260 AAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCG
* * *
21008408 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATGGCTACT
325 AAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACT
* * *
21008473 GGCCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAG
390 AGCCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAGGAG
* ** * *
21008538 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCC
455 AGATAACGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *
21008603 GACTCCCCCGATCGTCGGAACCCCAATACCGCCGATCAAGTTCTCCGGTGATGCTCCGACGTTGG
520 GACCCCCCCGATCGTCGGAACCCCAATACCGCCGATCAAGTTCTCCGGTGATGCTCCGACGATGG
* **
21008668 TGCCCCGGGAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCT
585 TGCCCCGGGAAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
*** * *
21008733 CGGTCTTGTCCGATCTTAGACTGGGAATGAGCACGCATGCTTAGACTGGGAACGAACTCCGTATG
650 CGGTCCAATCCGATCTTAGACTGGGAATGAACACGCATGCTTAGACTAGGAACGAACTCCGTATG
21008798 CCTAAGTCATCCCACGAAA
715 CCTAAGTCATCCCACGAAA
* *
21008817 CGAGCAGGTGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
1 CGAGCAGGCGGGCA-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGG
* * * ***
21008882 TGGTAAGTGGGTTTAGGCCCATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
65 TGGTAAGTGGGTTTAAGCACATCTTCATATTCCTACATGCCAATGCCATTTTTATGGCTTGTAAA
* *
21008947 TTCATACAGTGGTCCCTTAAACCTTCACCTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTT
130 TTCATACAATGGTCCCTTAAACCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
** * * * *
21009012 TCATGATTTTTGAAACTTGTTGCGGTTTGAGATTTTTTAAATTTTTTTTAGAAGGA-TTTTAGGC
195 TCACAATTTTTGAAA-TT-TTGAGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTT-GGC
* * *
21009076 CCCAAACTTGGTAGACGTGATCCTTGT-TTTCTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
257 CCCAAACTTGGTAGACGTGATCCCTGTATTT-TTGTTGGCATGCAAAAAAAAATTCAGCTAAAAA
21009140 CTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGC
321 CTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGC
* * *
21009205 TACTAG-CGGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-ACGGTTTG
386 TACTAGCCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTG
*
21009268 AGGAGAGATAACGGGCCAATATAAAGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACAC
450 AGGAGAGATAACGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * *
21009333 CCCCGTCGGCCCCCCCGATCGTCGGAACCCCAATACCGCCGGTCAAGTTCTCCGGTGATGCTCTG
515 CCCC--CGACCCCCCCGATCGTCGGAACCCCAATACCGCCGATCAAGTTCTCCGGTGATGCTCCG
* * *
21009398 GCGATGGTGCCCCGGCG-AAGAAAAATGCGACACCAGCACATGCCCTAGCCTAGCATGTGCTGCC
578 ACGATGGTGCCCCGG-GAAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * *
21009462 ACAACCCTTGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAA
642 ACAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAAC-ACGCATGCTTAGACTAGGAACGAA
* *
21009527 CTCTGTATGCCTAAGTCAAT-CCATGAAA
706 CTCCGTATGCCTAAGTC-ATCCCACGAAA
* * * * * *
21009555 TGAGC-GTGCGGGC-GCTC-A-GCCGGCCAGAGCGGCGGGAAGCGCAAGCCAGGGATC
1 CGAGCAG-GCGGGCAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATC
21009609 AACCGGGACC
Statistics
Matches: 701, Mismatches: 79, Indels: 24
0.87 0.10 0.03
Matches are distributed among these distances:
734 219 0.31
735 123 0.18
736 159 0.23
737 145 0.21
738 53 0.08
739 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (733 bp):
CGAGCAGGCGGGCAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
GGTAAGTGGGTTTAAGCACATCTTCATATTCCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAACCTTCACCTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
CACAATTTTTGAAATTTTGAGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTA
GCCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAGGAGA
GATAACGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
ACCCCCCCGATCGTCGGAACCCCAATACCGCCGATCAAGTTCTCCGGTGATGCTCCGACGATGGT
GCCCCGGGAAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTC
GGTCCAATCCGATCTTAGACTGGGAATGAACACGCATGCTTAGACTAGGAACGAACTCCGTATGC
CTAAGTCATCCCACGAAA
Found at i:21010399 original size:26 final size:26
Alignment explanation
Indices: 21010370--21010422 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21010360 CCGATCTGAT
21010370 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21010396 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21010422 C
1 C
21010423 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21011310 original size:26 final size:26
Alignment explanation
Indices: 21011281--21011333 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21011271 CCGGTTCCAT
21011281 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21011307 CTTAGCCTGGGGATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21011333 C
1 C
21011334 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21011768 original size:899 final size:896
Alignment explanation
Indices: 21008826--21012263 Score: 4500
Period size: 900 Copynumber: 3.8 Consensus size: 896
21008816 ACGAGCAGGT
* * * *
21008826 GGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTG
1 GGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
* * ** *
21008891 GGTTTAGGCCCATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAG
66 GCTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * *
21008956 TGGTCCCTTAAACCTTCACCTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTT
131 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
* * * * **
21009021 TTGAAACTTGTTGCGGTTTGAGATTTTTTAAATTTTTTTTAGAAGGA-TTTTAGGCCCCAAACTT
196 TCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTA-GCCCCAAACTT
*
21009085 GGTAGACGTGATCCTTGT-TTTCTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
260 GGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
21009149 TACAAGATTTTCTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCTACTA-GCG
324 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC-AGGCA
* * *
21009213 GCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-ACGGTTTGAGGAGAGAT
388 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGAT
** * * *
21009277 AACGGGCCAATATAAAGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGTCGG
452 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGG
* *
21009342 CCCCCCCGATCGTCGGAACCCCAATACCGCCGGTCAAGTTCTCCGGTGATGCTCTGGCGATGGTG
517 CCCCCCCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCC-GTGATGCTCCGGCGATGGTG
* * * * * * *
21009407 CCCCGGCGAAGAAAAATGCGACACCAGCACATGCCCTAGCCTAGCATGTGCTGCCACAACCCTTG
581 CCCCGACGAAGAAAAATACGGCACCAGCACATG-CCAAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * *
21009472 GTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCTGTATGC
645 ATCCGATCTCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
21009537 CTAAGTCAATCCATGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGCGGCGGGAAGCGCAAGCC
710 CTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAG-GGCGGGATGCGCAAGCC
* * * * * * * *
21009602 AGGGATCAACCGGGACCCCCTCTACATGCTAT-CAATCCTACTGCCGCAACCCTCGGTCCTGTCT
774 GGGGATCGATCGGGTCCCCCTCTGCGTG--ATGCAATCCTACTGCCGCAACCCTCGGTTCAGTCT
* * * * *
21009666 AATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAAT-GAGC-GAGCGGGC
837 GATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAACGA-AAAATCGAGCGGA-C-GGC
* * *
21009727 AGGCGGGCACTATGCCGGTCAGATAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
1 GGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
* * * * *
21009792 GGTTTAAGCACATCTTCATATTCCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAA
66 GCTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
21009857 TGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTT
131 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
* * * *
21009922 TTGAAA-TTTTT-AGGTTCGAGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTG
196 TCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTG
* * *
21009985 GTAGACGTGATCCCTGTATTTTTGTTGGCTTGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTA
261 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
21010050 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATGGCTACTGGCAGCA
326 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCA
* *
21010115 AACCTGTAAAATATCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGG
391 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * **
21010180 GGCCAACATAAGGGCAAAGTAGCAGCACCCATCGCGCATCATGTGTACACACCCCCCT-GGCCCC
456 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCC
* * *
21010244 CCCGATCGTCGGAACCCCAAT---GCC-ATC-GG---TCAG-G-TTCTCCGGCGATGGTGCCCCG
521 CCCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCGTGATGCTCCGGCGATGGTGCCCCG
* * * * * * *
21010299 ATGAAGAAAAATACAGCACCAGCACATGCCGAGCCCAGCTTGTGCTGCCGTAATCCTCGAACCGA
586 ACGAAGAAAAATACGGCACCAGCACATGCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGA
*
21010364 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
651 TCTCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
21010429 CAACTCACGAAATGACCGTGCGGGTGCTCAGCAGGCCAGAGGGGCGAGATGCGCAAGTCGGGGAT
716 CAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGA-GGGCGGGATGCGCAAGCCGGGGAT
* * * *
21010494 CGTTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCAG-TCTAGTCTGATCTT
780 CGATCGGGTCCCCCTCTGCGTGATG-CAATCCTACTGCCGCAACCCTCGGTTC-AGTCTGATCTT
* * * * *
21010558 AGACTGGGAATGAACTTCGTATACCTAAGCCAACTGACGAAACGAGCAAGCGGGCAGGC
843 AGACTGGGAATGAACTTCGTATGCCTAAGCCAA---ACGAAA-AATCGAGCGGAC-GGC
* *
21010617 GGGCGGGCACTACGCCGGCCAGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
1 GGGCGGGCACTA--------TGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
*
21010682 GGTAGGT-GCGTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAA
58 GGTAGGTGGC-TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
21010746 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTT
122 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTT
* * *
21010811 TCACGATTTTCAAAACTTTTTACGGTTCTG-GATTTTTTAAAATTTTTTTGGAAGGAGTTTTAGC
187 TCACGATTTTCGAAACTTTTTGCGGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGC
* * * *
21010875 CCCAAACTTGGTAGACGTGATTCTTGTATTTTTGTTGCCATGCACAAAAAGATTCAACTAAAAAC
251 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
** *
21010940 TAAAAGTGTACAAGATTTTGTGACCATTTGAAAAACA-TGTCCCCATTTCAAACACTTTAATGGC
316 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA-AGTGTCCCCATTTCAGACACTTTAATGGC
* * * *
21011004 TACAGGTAGCAAACCTATAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
380 TACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* *
21011069 AAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACACCC
445 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * *
21011134 CCCTCGG-CCCCCC-ATCG-CTAGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATACTCCGG
510 CCCTCGGCCCCCCCGATCGTC-GGAACCCCAATACCGCCGGTCAGGTTCTCCG-TGATGCTCCGG
*
21011196 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGC
573 CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATG-CCAAGCCCAGCATGTGCTGCCGC
* * *
21011261 AACCCTC-AGTCCGGT-TCCATCTTAGACTGGGAATGAACTCCGTATGCTTAGCCTGGGGATGAA
637 AACCCTCGA-TCCGATCT-CATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* ** *
21011324 CTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCAAGAGGGACGGGA
700 CTCCGTATGCCTAAGCCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGG-CGGGA
* * * * *
21011389 TGCGTAAGCCGGGGATCGATCGAGTCCCCCTTTGCGTGATGCTGATCCTACT-CATGCAACCCTC
764 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGATGC-AATCCTACTGC-CGCAACCCTC
* *
21011453 GGTTCGGTCTGATCTTAGAGTGGGAATGAACTTCGTATGCCTAAGCCAAACGAAAAATCGAGCGG
827 GGTTCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAAACGAAAAATCGAGCGG
21011518 ACGGAC
892 ACGG-C
* * *
21011524 GGGCGGGCACTATGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTTGCTG
1 GGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
* *
21011589 GCTTTAGGCACATCTTCATATTTCTGCATGCCAATGTCATTTTTATGGCTTTTAAATTCATACAA
66 GCTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
21011654 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCACGATTT
131 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
* * *
21011719 TCGAAACTTTTTGCGGTTCGAGAATTTTTACAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
196 TCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTG
* * *
21011784 GTAGACATGAT-CTTGAATTTTTTTTGGCATGCACAAAAAAAACTTCAGCTAAAAACTCGAAGTG
261 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAA-TTCAGCTAAAAACTCGAAGTG
* *
21011848 TACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
324 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAG
* * * * *
21011913 CAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGCGAGTTCTCAAGGTTTGCTGAGGAATAG
389 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
21011978 GGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATATGTGCACA--CCCCTCGGCC
454 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCC
* * *
21012041 CCCCCGATCGTCGGAACCCCAATACCGTCGGTTAGGTTCTCCGTTGATGCTCCGACGATGGTGCC
519 CCCCCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCG-TGATGCTCCGGCGATGGTGCC
* * * *
21012106 TCGATGAAGAAAAATACGGCACCAAG-ACATGCCAGAGCCCAGCATGTGCTGTCGTAACCC-CTG
583 CCGACGAAGAAAAATACGGCACC-AGCACATGCCA-AGCCCAGCATGTGCTGCCGCAACCCTC-G
*
21012169 ATCCGGTC-CACTCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
645 ATCCGATCTCA-TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * *
21012233 CCTAAGCCAACCGATGAAATGAGCGAGCGGG
709 CCTAAGCCAACCCACGAAATGAGCGTGCGGG
21012264 CGGGCGGGCA
Statistics
Matches: 2214, Mismatches: 261, Indels: 125
0.85 0.10 0.05
Matches are distributed among these distances:
884 1 0.00
885 1 0.00
886 219 0.10
887 43 0.02
888 2 0.00
889 5 0.00
890 20 0.01
891 1 0.00
893 1 0.00
894 2 0.00
895 3 0.00
897 1 0.00
898 228 0.10
899 534 0.24
900 653 0.29
901 187 0.08
902 3 0.00
903 2 0.00
904 2 0.00
906 2 0.00
907 24 0.01
908 6 0.00
909 1 0.00
910 52 0.02
911 219 0.10
912 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
GGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
GCTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
TCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCC
CCCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCGTGATGCTCCGGCGATGGTGCCCCG
ACGAAGAAAAATACGGCACCAGCACATGCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGA
TCTCATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
CAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGCGGGATGCGCAAGCCGGGGATC
GATCGGGTCCCCCTCTGCGTGATGCAATCCTACTGCCGCAACCCTCGGTTCAGTCTGATCTTAGA
CTGGGAATGAACTTCGTATGCCTAAGCCAAACGAAAAATCGAGCGGACGGC
Found at i:21012210 original size:26 final size:26
Alignment explanation
Indices: 21012181--21012233 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21012171 CCGGTCCACT
21012181 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21012207 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21012233 C
1 C
21012234 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21013672 original size:26 final size:26
Alignment explanation
Indices: 21013636--21013688 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21013626 CTGGTTTGAT
*
21013636 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAACGAACCCCGTATG
*
21013662 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACCCCGTATG
21013688 C
1 C
21013689 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACCCCGTATG
Found at i:21014411 original size:26 final size:26
Alignment explanation
Indices: 21014382--21014434 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21014372 CCAGTCTGAT
*
21014382 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
21014408 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATGAACTCTGTATG
21014434 C
1 C
21014435 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCTGTATG
Found at i:21015327 original size:25 final size:26
Alignment explanation
Indices: 21015285--21015333 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
21015275 GTCCGATCTT
*
21015285 AGACTGGGAATGAACTCCGTATGCTC
1 AGACTGGGAATGAACTCCATATGCTC
21015311 AGACTGGG-ATGAACTCCATATGC
1 AGACTGGGAATGAACTCCATATGC
21015334 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 14 0.64
26 8 0.36
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCATATGCTC
Found at i:21015811 original size:902 final size:899
Alignment explanation
Indices: 21013995--21018886 Score: 5949
Period size: 895 Copynumber: 5.5 Consensus size: 899
21013985 CATTTTTTTT
* * * * * *
21013995 TTGGTAGACGTGATCCCTCTATTTTTTTTGGCATGCACAAAAAAATTCGGCTAAAAACTTGAAGC
1 TTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
*
21014060 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
66 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCA
*
21014125 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATA
131 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
21014190 GGGGGACACA-ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCCGCACA-CCCCCTGAC
196 GGGGGCCA-ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGAC
* * *
21014253 CCCCCGATCACCGAAACCCCAATGTCGTCGGTCAGGTTCT-C--C-A-------ACGATGATGAC
260 CCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
** * * *
21014307 CCGGCGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCATCATGTGCTACTGTAACCCTCGGT
325 CCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGT
* * * * *
21014372 CCAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGAATGGGAATGAACTCTGTATGCCA
390 CCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG-ATGAACTCCGTATGCCT
*** * * * * * *
21014437 AAGTCAACCTGCGAAACTAGCATGCGCGCGCTCAACCAGCCAGAGGGGCGAGATGCGCAAGCCAG
454 AAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG
* * * * * *
21014502 GGATCGACCGGGTCCCCATCTGCATG-CTACCAATCTTGCTACCAT--AACCCTCAATCCGGTCT
519 GGATCGACCGGGTCCCCCTCTG-ATGTATACCGATCTTGC-AGC-TGCAACCCTCGATTCGGTCT
* * *
21014564 GATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAACGAGC-GGACGGGC--G
581 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGG-CGGGCGGG
21014626 GGCAGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
645 GGCA-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
21014691 GTTTATGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTGTAAATTCATACAAT
709 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
21014756 GGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCACGATTTT
774 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * *
21014821 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTAGAAGGATTTTTGGCCCCAAAA
839 TGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAAC
** * * *
21014882 TTTTTAGACATGATCCTTCTT-TTTTTGTTGGCATGCATAAAAATATTCAGCTAAAAACTCGAAG
1 TTGGTAGACATGATCCTT-TTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAG
* * *
21014946 GGTACATGATTTTGTGACCATTTTGAAAAAAGTGTCCCCATTTCAGACACTTT-GTTGGCTACTG
65 TGTACAAGATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATT-GCTACTG
* * *
21015010 GCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGTTCTGAGTTCTCGAGGTTTGATGAGGG
128 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
21015075 ATATGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAG
193 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
** * *
21015140 -CCCCCCAGATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGT
258 ACCCCCC-GATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGT
* * * * * *
21015204 GCCACGGCGAAGAGAAATGCAGCACCAGCACATGGCCGAGTCCAGCATGTGGTACCGCAACCCTC
322 GCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC
* *
21015269 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTCAGACTGGGATGAACTCCATATGC
387 GGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGC
* *
21015334 CTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGTC
452 CTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * *
21015399 GGGGATCGATCGGGTCCCCTTCT-ATGTAGTACCGATCTTGCAGCTGCAACCCTCGGTTCGGTCT
517 AGGGATCGACCGGGTCCCCCTCTGATGTA-TACCGATCTTGCAGCTGCAACCCTCGATTCGGTCT
* *
21015463 AATCTTAGACTGGGAATGAACTCGGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGA
581 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGC-GG-
21015528 GGGCAAGCACTACGTCGG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
644 GGGC-AGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
21015592 GGTTTAGGCACATCTTCATATTTCTGTGTTCCAATTCCATTTTTACGGCTTGTAAATTCATACAA
708 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
21015657 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCACAATTT
773 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * *
21015722 TGGAAACTTTTTGGGGTTCAAGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAAC
838 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAAC
* *
21015784 TTGGTAGACAAGATCCTTTTATTTTTGTTGGCATGCATAAAAAAATTCAAG-TAAAAACTTGAAG
1 TTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTC-AGCTAAAAACTTGAAG
* * *
21015848 GGTACAAGTTTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-TGCTTACTGG
65 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGC-TACTGG
*
21015912 CAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
129 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
21015977 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGGACACCCCCCCGT
194 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG
* ** * * *
21016042 TCCTTCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATAGTG
258 ACCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
* * * * * ** *
21016107 CCCCGACAAAGAAAAATGCGGCACTAGCACATGCCCAAGCCCCGCATGTGCTGTCGCAACCCTTG
323 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
* * *
21016172 GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGC
388 GTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGC
* * *
21016237 CTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCG
452 CTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * *
21016302 AAGGATCGGTCGGGTCCCCCTCTGCATGCTAT--CGATCCTGCTATC-GCAACCCTCGA-TCTGG
517 AGGGATCGACCGGGTCCCCCTCTG-ATG-TATACCGATCTTGC-AGCTGCAACCCTCGATTC-GG
* * * *
21016363 TCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACTGATGAAACGA--A--CGGGCG
578 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCG
*
21016424 GGCGG--GCACTACGTCGGCCAGAGAAACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
643 GG-GGCAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
21016487 GGGTTTAGGCACATCTTCATATTT-T---T----A---C------A-----TG------C---CA
707 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
21016521 ATGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
772 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
21016586 TTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAAGTTTTTCGGAAAGAGTTTTGGCCCCAAAC
837 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAAC
* * *
21016649 TTGGTAGACATGATCCTTGTAGTTCTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
1 TTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
* *
21016714 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACATTTTAATTGCTACTGGCA
66 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCA
21016779 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
131 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
21016844 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCACACACACCCCCCGGC
196 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG--CGCACACCCCCCGGA
** * * * **
21016909 CCCCCCGATCGTCG-GACCCCAAAGTCGTCGGTCAGGTTCT-CGGTGATGCTCCGACGATGGTGC
259 CCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* * * *
21016972 CCCGGTGAAGAAAAACGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGG
324 CCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGG
** * * *
21017037 TCTGGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCC
389 TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGATGAACTCCGTATGCC
* * * *
21017102 TAAGTCAAACCACGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCA
453 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCA
* * * * * * * **
21017167 GGGATCGGCTGGGTCCCCCTCT-A--CAT---GCTGTT--A---G-AACCCTCGATCCGATCCAA
518 GGGATCGACCGGGTCCCCCTCTGATGTATACCGATCTTGCAGCTGCAACCCTCGATTCGGTCTGA
* * *
21017220 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAACAAACGAGCGGGCAG
583 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--A-G-GCGGGC-G
* * *
21017285 GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGAGTGGTAGG
643 G-GGGC-AGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
21017350 TGGGTTTAGGCACATCTTCATATTTCTACGAGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
706 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
21017415 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCACGAC
771 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * ** * **
21017480 TTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTTGAAGGAGTTTTGGCCGTAAAC
836 TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAAC
* *
21017544 TTGGTAGA-AGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
1 TTGGTAGACA-TGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAG
*
21017608 TGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATTGCTACTGGC
65 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGC
* * *
21017673 AACAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
130 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
21017738 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATGGCACATCATGTTCGCACACCCCCC-GAC
195 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGAC
* ** * * ** * *
21017802 CCTCCTGATCGTCGGAACCCTAATGCCACCGATCAGGTTCTCCGACGAAGCTCCGACGATGGTGC
260 CC-CCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* ** * * * * *
21017867 CCCGGCAAAGAAAAATGTAGCACCAGCACATGCCCGAGCCCCGCATGTTCTACCGCAAACCTTGA
324 CCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGG
** * * *
21017932 TCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGGCTGGGAATGAACTCCCGTATGC
389 TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG-ATGAACT-CCGTATG-
* * **
21017997 CCTAAGTCAACCCATG-AACGGAGCCGTGCCGGGCACTCAAGTCGGCCAGATGGGGTAGGATGCG
451 CCTAAGTCAACCCATGAAAC-GAG-CGTG-CGGGCGCTC-AGCCGGCCAGA-GGGGCGGGATGC-
* * * ** * * *
21018061 GC-AGCCAAGGAATCGACCGGTTCCCCTTCTGCGGTGCTACCCGATCCTGCTGCTGCAACCCTCA
510 GCAAGCC-AGGGATCGACCGGGTCCCCCTCTGATGT-ATA-CCGATCTTGCAGCTGCAACCCTC-
* *
21018125 GTTTCGGTCTCCGATGCTTAGAACTGGGAATG-ACTCCGGTATGCCTAAGCCAACCGACGAAATG
571 GATTCGGTCT--GAT-CTTAG-ACTGGGAATGAACTCC-GTATGCCTAAGCCAACCGACGAAACG
* * * * **
21018189 AGCGAAGC-GGC--GGGCA--ACTACGCCAGGCCAGAGAGACGGGATGTGCAAAGCCATTCAATT
631 AGC-AGGCGGGCGGGGGCAGCACTACGTC-GGCCAGAGAGACGGGATGCGC-AAGCC-GTGGA-T
* *
21018249 CCGATAGGGTGTGTAGGTGGGTTTTAGACACATCTTCCATATTTCTGGCATGCCCAAT-CCATTT
691 -CGATAGGGTG-GTAGGTGGG-TTTAGGCACATCTT-CATATTTCT-GCGTG-CCAATGCCA-TT
*
21018313 TTTATGGGCTTGTAAATTCCGTACCAATGGTCCCTTAAGCCTTTCACGTGAAGTTTCATGGCAAG
749 TTTAT-GGCTTGTAAATT-CATA-CAATGGTCCCTTAAGCC-TTCACGTGAAGTTTCATGGCAAG
* * ** * *
21018378 ACGACTCGTTTTCTATTTTTCATGATTGTCAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTCT
810 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
*
21018443 TTCAGAATGAGTTTTGGCCCCAAAC
875 TTCAGAAAGAGTTTTGGCCCCAAAC
* *
21018468 TTCGTAGACATGATCATTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
1 TTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
* * *
21018533 GTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTATTGGCA
66 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCA
* * * *
21018598 GCAAACCTATAAAATCTCAAATGCTCTTTGAGAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
131 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * *
21018663 GGGGGCCAATATAAGGGCTAAGTACTAGCACACATCACACATCATGTGCACACACCCCCCCTGG-
196 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGA
* * * * * *
21018727 CCCTCCGGTCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT-CTAGCGTTGGTG
259 CCCCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTG
* ** * *
21018791 CCCCGACGAAGAAAAATGTTGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCG
323 CCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
*
21018856 GTCCAGTCCGATCTCAGACTGGGAATGAACT
388 GTCCAGTCCGATCTTAGACTGGGAATGAACT
21018887 ATGTATGCGT
Statistics
Matches: 3481, Mismatches: 380, Indels: 250
0.85 0.09 0.06
Matches are distributed among these distances:
852 58 0.02
853 2 0.00
855 1 0.00
856 1 0.00
858 3 0.00
859 2 0.00
860 5 0.00
861 4 0.00
862 2 0.00
864 294 0.08
865 369 0.11
866 20 0.01
867 4 0.00
868 1 0.00
872 1 0.00
874 2 0.00
875 1 0.00
879 1 0.00
881 1 0.00
885 1 0.00
886 2 0.00
887 72 0.02
888 159 0.05
889 39 0.01
890 1 0.00
892 7 0.00
893 22 0.01
894 22 0.01
895 479 0.14
896 78 0.02
897 22 0.01
898 10 0.00
899 177 0.05
900 120 0.03
901 170 0.05
902 464 0.13
903 185 0.05
904 3 0.00
905 4 0.00
906 3 0.00
910 10 0.00
911 20 0.01
912 5 0.00
913 7 0.00
914 1 0.00
915 10 0.00
916 16 0.00
917 22 0.01
918 11 0.00
919 7 0.00
920 23 0.01
921 49 0.01
922 3 0.00
923 17 0.00
924 328 0.09
925 136 0.04
926 3 0.00
927 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TTGGTAGACATGATCCTTTTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGACC
CCCCGATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
CGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGATGAACTCCGTATGCCTAA
GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGG
ATCGACCGGGTCCCCCTCTGATGTATACCGATCTTGCAGCTGCAACCCTCGATTCGGTCTGATCT
TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGGGCAGC
ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCCAAAC
Found at i:21016213 original size:26 final size:26
Alignment explanation
Indices: 21016184--21016236 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21016174 CCGGTCTGAT
*
21016184 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21016210 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21016236 C
1 C
21016237 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21017086 original size:26 final size:26
Alignment explanation
Indices: 21017048--21017100 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21017038 CTGGTCCAAT
* *
21017048 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21017074 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21017100 C
1 C
21017101 CTAAGTCAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21020421 original size:26 final size:26
Alignment explanation
Indices: 21020385--21020434 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
21020375 GACTTAGGCA
21020385 TACGAAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
21020411 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
21020435 ATCGAATCTG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:21021320 original size:26 final size:26
Alignment explanation
Indices: 21021284--21021336 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21021274 GTTGACTTAG
21021284 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
21021310 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21021336 G
1 G
21021337 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21022209 original size:26 final size:26
Alignment explanation
Indices: 21022180--21022235 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
21022170 TGGGTTGACT
21022180 TAAGCATACGGAGTACATTCCCAGTC
1 TAAGCATACGGAGTACATTCCCAGTC
*
21022206 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTACATTCCCAGTC
21022232 TAAG
1 TAAG
21022236 ATCGGACAGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (26 bp):
TAAGCATACGGAGTACATTCCCAGTC
Found at i:21023118 original size:26 final size:26
Alignment explanation
Indices: 21023082--21023134 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21023072 GTTGACTTAG
*
21023082 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21023108 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21023134 G
1 G
21023135 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21024006 original size:25 final size:26
Alignment explanation
Indices: 21023978--21024026 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
21023968 GTTGACTTAG
21023978 GCATACGGAG-TCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21024003 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
21024027 GAAATCAGAC
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 10 0.43
26 13 0.57
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21024435 original size:899 final size:900
Alignment explanation
Indices: 21020318--21024854 Score: 5990
Period size: 899 Copynumber: 5.0 Consensus size: 900
21020308 CGATCCCTTA
* *
21020318 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCTCGCTCGTTTTGTGGGTTGACTTAGG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
21020383 CATACGAAGTTCATTCCCAGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAGATCGAATCT-GAC
66 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGAC
* * *
21020447 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAATTTTCTTCGACGGGG
130 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGACGGGG
** * * ** *
21020512 CACCATCACCGAAGCATCGTCGAGCATCACCGGAGAACCTGATCGGTGGCATTAGGGTTCCGGCG
195 CACCATCGTCGGAGCA---TC--G-AT-A---GAGAACCTGACCGACGGCATTGGGGTTCCGGCG
*
21020577 ATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
250 ATC-GGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
21020642 TTGGCCCACTATCCCTCATC-AACCTTGAGAACTCACACCCCTTTAAAGAGCATTTTGAGATTTT
314 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-TTTGAGATTTT
*
21020706 ACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
378 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * ** *
21020771 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATACTTGCCAACAAAAATACAAGGATCA
443 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCA
* * * * * *
21020836 CGTCTACCAATTTTGGGGCCAAAACTCTTTCCGAAAAAA-TTTAAATAATCTCGAACCGGAAAAA
508 CGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
* * *
21020900 GTTTTAAAAATCGTGAAAAATAGAAAACGAGTGGTCATGCCATGAAACTTCACGTGAAGGCTTAA
573 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
21020965 GGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGC
638 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
* * *
21021030 CTAAACCCACCTACCACCCTATCGATCCATGACTTGCGCATCCCGTCTCTCTGGTCGACGTAGTG
703 CTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG
* *
21021095 CCCGCCCACCTACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTC
768 CCCGCCCGCCTACCCGCCC-CT--TTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * *
21021160 TAAGATC-GAACTGGACCGAGGGTT---G----T-GA----CAGCACCCAGAGGGGGACCCGACC
829 TAAGATCAG-ACCAGACCAAGGGTTGCGGCAACTAGATCGGCAGCACACAGAGGGGGACCCGACC
*
21021212 AATCCCCG
893 GATCCCCG
*
21021220 GCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
21021285 CATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGAA
66 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGAC
* * * ** * * *
21021349 TGTGGATTGCGATAGCACATGCTGGGCTCGGGTATGTGCTGGTGCCACATTTTTCTTC-ACCGGG
130 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGACGGGG
* * *
21021413 CACCATCGTTGGAGCATCGCTAGAGAACCTGACC-AGCGGCATTGGGGTTCCGACGATCGGGGGG
195 CACCATCGTCGGAGCATCGATAGAGAACCTGACCGA-CGGCATTGGGGTTCCGGCGATCGGGGGG
* * * * *
21021477 CCGGGAGGGGTGTGCTCACAGGATTTGCGATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCT
259 CCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
21021542 ATCCCTCATCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
324 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
21021607 GCCAGTAGCCATTAAAGTGTCTGGAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACA
389 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
21021672 CTTCAAGATTTTGGCTGAA-ATTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAG
454 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* ** * **
21021736 TTTCTGG-CCAAAAGCTTTTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAA
519 TTT-GGGACCAAAA-CTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAA
*
21021800 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACGATT
582 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
** * *
21021865 GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGTCTAAACTCA
647 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
* * * * * * *
21021930 CCTAGCACACTATCGATCAACGGATTACGCATCCCCTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
712 CCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
* * * * * * ** *
21021995 TTGCCCGCTCGTTTTGTCAGTTGGTTTATACATACAGAGTTCATTCCCAGTCTAAGATCAGACCA
777 CTACCCGCCCCTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA
* * * * * *
21022060 GACCGAGGGTTGTGCCAAC-AGGATCGACAGCATGA-AGAGGGGGACCCGACCGATCCCTG
842 GACCAAGGGTTGCGGCAACTA-GATCGGCAGCA-CACAGAGGGGGACCCGACCGATCCCCG
* * * *
21022119 GCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAAG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * *
21022184 CATACGGAGTACATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAGGATC
66 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACC
* * * * * * *
21022249 GAGGGTTGCGGCAGCCCATGTTGGGCTTGGGCATGGGCTGGTGTCATATTTTTCTTCGCCGAGGC
131 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGACGGGGC
* * * * *
21022314 ATCATCGTCGGAGCATCG-TCCGAGAACCTAACCGACGGCATTAGGGTTCCGGCAATCGGGGGGC
196 ACCATCGTCGGAGCATCGAT-AGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGC
* * *
21022378 CTGGGGGGATGTGCGCCCATGATGTGCGATGGGTGCTGGTACTTGGCCC------T------CTA
260 CGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
21022431 TCCCTCATCAAACCTCGAGAACTGACA-CCCCTTAAAGAGCATTTCAGATTTT-CAGGTTTGCTG
325 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
21022494 CCAGTAACCATTAAAGTGTCTTG-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
390 CCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
** * *
21022558 CTTCGAGTTTTTAGCCAAATTTTTTTGTGCAAGCCAAAAAAAATAAAAGGATCATGTCTACCAAG
454 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAG
* * * **
21022623 TTTGGCACCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTGGAAAAT
519 TTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
* *
21022688 CGTGAAAAATAGAAAATGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
584 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
21022753 ATGAATTTACAAGCCATAAAAATGGAATTGGCACATAGAAATATGAAGATGGTGCACTAAACTCC
649 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT-GTGC-CTAAAC-CC
21022818 ACCTACCAACCCTATCGCATCCATGGCTTGCCGCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCG
711 ACCTACC-ACCCTATCG-ATCCATGGCTTG-CGCATCCCGTCTCTCTGGCCGGCGTAGT-GCCCG
* ** *
21022883 TCCGCCCGGCCCGGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTA
772 CCCG-CCTACCC-GCCC-CT--TTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * *
21022948 AGA-CTGGACCTA-ACCAAGGGTTGCGGC-AGTAGGATCAGCAGTACGCAGAGGGGGACCCGACC
831 AGATC-AGACC-AGACCAAGGGTTGCGGCAACTA-GATCGGCAGCACACAGAGGGGGACCCGACC
*
21023010 GATCCCCA
893 GATCCCCG
* * * * *
21023018 GCTTGCGCATCCCACCCCTCTGGCCGGCTAAGCGCCCGCGCACTCATTTCGTGGGTTGACTTAGG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * *
21023083 CATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATTGGACCGGACC
66 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACC
* * * ** *
21023148 GAGGGTTGTGGCAGCACATGCTGGGCTCGAGCACGTGCTGGTGAT-GTATTTTTCTTCGCCGGGG
131 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-TCACATTTTTCTTCGACGGGG
* * ** * *
21023212 CACCATCATTGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGT
195 CACCATCGTCGGAGCATCGATAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGC
*** *
21023277 C-GGGGGGGTGTGCGCACATGATGCATGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
260 CGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
21023341 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA-ATTTTACAGGTTTGCTG
325 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
21023405 CCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
390 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
21023470 TTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCATGTCTACCAAGT
455 TTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* * *
21023535 TTGGGACCAAAACTCCTTCCGAAAAAATTTT-AAAAATCCTGAACCGTTAAGAGTTTCAAAAATC
520 TTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATC
* * *
21023599 GTGAAAAATAGAGAACGAGTCGTCTAGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTA
585 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
**
21023664 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-AAATATGAAGATGTGCCTAAACCCACCT
650 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* *
21023728 ACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGCGCCCGCCTGCCTA
715 ACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTA
* * * * *
21023793 CCCGCACATTTTGTCGGTTGGCTTAGGCATACGGAGTTCGTTTCCAGTCTAAGATCAGATCAGAC
780 CCCGCCCCTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * **
21023858 CAAGGCTTACGGCAACTAGATCGGCAGCACACAGAGGGTGACCCGGTCGATCCCCG
845 CAAGGGTTGCGGCAACTAGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCG
* * * * * * *
21023914 GGTCGCGCATCCCACCCCTCTGGCCGACTGAGTGCCCGCACGTTCGTTTCATGGGTTGACTTAGG
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
21023979 CATACGGAG-TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTGAA-ATCAGACTGGAC
66 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT-AAGATCGGACTGGAC
* * * *
21024042 CGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTATCGCATTTTTCTTCGTCGGGG
130 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGACGGGG
* * **
21024107 CACCATCGTCGGAGCATCGATGGAGAACCTGACCGACAGCATTGGGGTTCCGGTAATCGGGGGGG
195 CACCATCGTCGGAGCATCGATAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC--GGGGG
*
21024172 GCCGGGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
258 GCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
21024237 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
323 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
21024302 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
388 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * *
21024367 ACTTTGAGTTTTTAGCTGAATTTTTTTGTTCATGCCAAAAAAAATACAAGGATCACATCTACCAA
453 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAA
* ** * *
21024432 GTTTGGGGCTGAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGT-AAAAGTTTCAAAAA
518 GTTTGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAA
*
21024496 TCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
583 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
21024561 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
648 TATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCAC
* * * * * * *
21024626 CTACCACCCTATTGATCCATAGCTTGTGCATGCCGTCTCTCTGGCCGGCATAGTGCCCGTCTGCC
713 CTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
* * * * * * * * * *
21024691 CACCTGCTCGTTTCGTCGATTGGCTTAGGCATACGGAATTCATTCCCAATCTAAGATCAGATCGG
778 TACCCGCCCCTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG
* * * * * **
21024756 ACCAAGGGTTGCGGCAGCAAGATCGGTAGCACGCAG-GGTGGGACACGGTCGATCCCCG
843 ACCAAGGGTTGCGGCAACTAGATCGGCAGCACACAGAGG-GGGACCCGACCGATCCCCG
* *
21024814 GCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGTCCGCAC
1 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
21024855 ACTCATTCCC
Statistics
Matches: 3195, Mismatches: 365, Indels: 152
0.86 0.10 0.04
Matches are distributed among these distances:
886 239 0.07
887 130 0.04
888 37 0.01
889 55 0.02
890 199 0.06
891 279 0.09
892 27 0.01
893 8 0.00
894 8 0.00
895 158 0.05
896 154 0.05
897 14 0.00
898 153 0.05
899 783 0.25
900 337 0.11
901 23 0.01
902 176 0.06
903 27 0.01
904 13 0.00
905 9 0.00
906 9 0.00
907 6 0.00
908 4 0.00
909 12 0.00
910 156 0.05
911 179 0.06
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACC
GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGACGGGGC
ACCATCGTCGGAGCATCGATAGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCC
GGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
TGGGACCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCG
TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
GAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTA
CCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTAC
CCGCCCCTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
AAGGGTTGCGGCAACTAGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCG
Found at i:21026617 original size:25 final size:26
Alignment explanation
Indices: 21026589--21026640 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21026579 GTTGACTTAG
*
21026589 GCATACGGAG-TCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21026614 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21026640 G
1 G
21026641 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21026952 original size:894 final size:892
Alignment explanation
Indices: 21024861--21029123 Score: 5476
Period size: 896 Copynumber: 4.8 Consensus size: 892
21024851 GCACACTCAT
* ** * * *
21024861 TCCCAGTGTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACATGCTTGGCTTGGGCATGTGCTG
1 TCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * * *
21024926 GGGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCTGAAGAACCTGACCGACGGCA
66 GTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGGCGGCA
* * * * * *
21024991 ATGGGGTTCCGGCGATCA-GGGGG-CTGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGT
131 TTAGGGTTCTGTCGATCAGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * * *
21025054 ACGTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCATATCCCCATAAAGAG
196 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
21025119 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
261 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
* *
21025184 CAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAA
326 CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
21025249 AATACAGGGATCA-AGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTTAAAAAAT
391 AATACAAGGATCACA-TCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAA-TTTTAAAAAAT
* * * *
21025313 -CTCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAAC-ACGTCGTCTTGCCATGAAAC
453 CCTC-AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA-GTCATCTTGCCATGAAAC
* *
21025376 TTCACGTGAAGGCTT-AGAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAAAGC
516 TTCACGTGAAGGCTTAAG-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* *
21025440 AGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCATGGCTTGCGCATCCCGTC
580 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTTGCGCATCCCGTC
* * * * *
21025505 TCTTTGGCCGGCGTAGTGCACGCCCGCCCGCCTGCATGCTCATTTCATCGGTTGGCTTAGGCATA
644 TCTCTGGCCGACGTAGTG-A--CCCGCCCGCCCGC---CTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * * * * *
21025570 CAAAGTTCATTCCCAATCTAAGATCAG-ACCGAACTGAGGGTTCCGACAACAGGATCGACAGCAC
703 CGGAGTTCATTCCCAGTCTAAGAT-AGAACAG-ACCGAGGGTTGCGGCAGCAGGATCAACAGCAC
* * * * ** *
21025634 ATAAAGGGGGACCCGACCGATCC-CTGGCTTGCGCATCCAGCCCCTCTGGCTGGTTGAGCGCCCG
766 ATAGAGGGGGACCCGACCGATCCTC-GGCTTGCGCATCCCG-CCCTCTAGCCGACTGAGCGCCTG
*
21025698 CACGCTCGTTTCGAGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTC-AA--A--GA--T--
829 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGAGTTCA
* * *
21025752 T----G-----GAT----C-AGACCGAGGGTTGCGGCAGCACATGCTGGGGTCTAGG-ATGCGCT
1 TCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTC-GGGCATGTGCT
* * * * * **
21025802 GGTGCTACATTTTTCCTCATCGAGGCACCGTCGCCGGAGCATCGTCGGAGAACCTGACCGGCGGC
65 GGTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGGCGGC
* * * * *
21025867 ATTAGAGATCTGCCGATC-GGGGGGCC--GGGGGGTGTGCGCACGTGATGTGCGATGGGTGTTGG
130 ATTAGGGTTCTGTCGATCAGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
21025929 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCAAGAACTCACACCCCCTTAAAGA
195 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
21025994 GCATTTCAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
260 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
* * *
21026059 TCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAAAA
325 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
* * ** *
21026124 AAATACAAGAATCATATCTACCAAGTTTATGGCCAAAAGTCCTTCCAAAAAATTTTAAAAAATCC
390 AAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCC
*
21026189 -CAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGGCATGAAACTTCA
455 TCAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCA
* *
21026253 CGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGACATTGGCACGCAGAAA
520 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
* * **
21026318 TATGAAGATGTGCCTAAACCCAGCCTACCACCCTATCGATCCACGCTTGCACGTCCTATCTCTCT
585 TATGAAGATGTGCCTAAACCCA-CCTACCACCCTATCGATCCACGCTTGCGCATCCCGTCTCTCT
* * * **
21026383 GGCCGACGTAGTG-CCCGCCCGCCCG-CTAGTTTCCTCGGTTGGCTTAGGCTTACAAAGTTCATT
649 GGCCGACGTAGTGACCCGCCCGCCCGCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
21026446 CCCAGTCTAAGATAGGACCAGATCGAGGGTTCCAGCAGCAGGATCAACAGCACATAGAGGGGGAC
714 CCCAGTCTAAGATA-GAACAGACCGAGGGTTGCGGCAGCAGGATCAACAGCACATAGAGGGGGAC
* * * * * * * * *
21026511 CCGGCCGATCATCGACTTACGCATCCCGCTCCTCTAGCCGACTGACCGCCCGCACACCCGTTTCA
778 CCGACCGATCCTCGGCTTGCGCATCCCGC-CCTCTAGCCGACTGAGCGCCTGCACGCTCGTTTCG
21026576 TGGGTTGACTTAGGCATACGGAG-TCATTCCCAGTCTAAGCATGCAGAGTTCA
842 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT-C-GAGTTCA
*
21026628 TTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
1 -TCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* *
21026693 GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGGCGGC
65 GGTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGGCGGC
* *
21026758 ATTGGGGTTCTGTCGATC-GGGGGGCTCGGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTG
130 ATTAGGGTTCTGTCGATCAGGGGGGC-CGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * *
21026822 GTACTTGGCACTTATATTGGCCCCCTATTCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAG
194 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
21026887 AGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCTATTAAAGTGTCTAAAATGGGGACACTTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
* *
21026952 TTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTGTGCATGCCAACA
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* *
21027017 AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTTCTTTCGAAAAAATTTTAAAAAAT
389 AAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAC-TCCTTCCAAAAAATTTTAAAAAAT
* * ** * *
21027082 CCTGAACCACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
453 CCTCAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
* ** *
21027147 CACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGAAATAAAAATGGCATTGGCACGTAGA
518 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* *
21027212 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATTCCGTCTCT
583 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGCTTGCGCATCCCGTCTCT
* *
21027277 CTGGCCGGCGTAGTG-CCCGCCCGCCCG-CTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCA
647 CTGGCCGACGTAGTGACCCGCCCGCCCGCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* ** *
21027340 TTCCCAGTCTAAGATTAGAACAGACCGAGGGTTGTGGCAGCAGGATCAACAGCATGTAGAGGAGG
712 TTCCCAGTCTAAGA-TAGAACAGACCGAGGGTTGCGGCAGCAGGATCAACAGCACATAGAGGGGG
*
21027405 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTTCTAGCCGACTGAGCGCCTGCACGCTCGTTT
776 ACCCGACCGATCCTCGGCTTGCGCATCCCGCCC-TCTAGCCGACTGAGCGCCTGCACGCTCGTTT
* *
21027470 CGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAAGCAAACGGAGTTCA
840 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC-ATC-GAGTTCA
* * * * *
21027525 TTCCCAATCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCT
1 -TCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* ** * *
21027590 GGTGCCATATTTTTCTTTGTCGGGGCACCATCGCTGGAGCATCGCTGGAGAACCTGACCGGCGGC
65 GGTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGGCGGC
* * * *
21027655 ATTAGGGTT-TAG-CGATCAAGGGGGCCGGGGGGGATGTGCGCACATGATGTGTGATGGCTGCTG
130 ATTAGGGTTCT-GTCGATCAGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
21027718 GTACTTGGCCCTTATATTGGCCGCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAG
194 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* **
21027783 AGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
*
21027848 TTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * ** *
21027913 AAAATATC-AGGATCACGTCTCCCAAGTTTGGGGCCAAAACTCCTTCTGGAAAAGTTTTAAAAAA
389 AAAATA-CAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAA
* * * *
21027977 TCC-CAAACCGCAAAAAGATTCAAAAATCGTGAAAAATTGAAAACGAGTTATCTTGCCATGAAAC
452 TCCTC-AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
*
21028041 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
516 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
21028106 GAAATATGAAGATGTGCCTAAACCCATCTACCAGCCTATCGATCCACGACTTGCGCATCCCGTTT
581 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-CTTGCGCATCCCGTCT
* *
21028171 CTCTGGCTGACGTAGTGCCGACCCGCCCGCCCGCCCACTTGTTTCGTCGGTTGGCTTAGGCATAC
645 CTCTGGCCGACGTAGT---GACCCGCCCGCCCG--C-CTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
21028236 GGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGTAGGATCGACAGCACAT
704 GGAGTTCATTCCCAGTCTAAGAT-AGAACAGACCGAGGGTTGCGGCAGCAGGATCAACAGCACAT
* *
21028301 AGAGGGGGACCCGACCGATCCTCGGCTTGTGCAT-CCGACCCCTCTAGCCGACTAAGCGCCTGCA
768 AGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCG--CCCTCTAGCCGACTGAGCGCCTGCA
21028365 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATC-A----A
831 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGAGTTCA
21028421 ----A---T----T-GGACT-----GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
1 TCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
21028469 GTGCCATATTTTTCTTCACCGGGG---CA---C-----CATCACCGGAGAACCTAACCGACGGCA
66 GTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGGCGGCA
* * *
21028523 TT-GGGTGTCCGGT-GATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
131 TTAGGGT-T-CTGTCGATCAGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * *
21028586 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTTGAGAACCCATACCCCCTTAAAG
194 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * *
21028651 AGCAATTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
259 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTT
* *
21028716 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTACTTTTGTGCATGCCAAC
324 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCATGCCAAC
*
21028780 AAAAATACAAGGATCACGTCTACCAAGTTT-GGGCGCAAAACTCCTTCCGAAAAAATTTTAAAAA
388 AAAAATACAAGGATCACATCTACCAAGTTTGGGGC-CAAAACTCCTTCC-AAAAAATTTTAAAAA
* * *
21028844 ATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCTTCTTGCCATGAAAC
451 ATCCTCAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* * **
21028909 TTCATGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATA
516 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
21028974 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
581 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCATCCCGTCT
* *
21029039 CTCTGGCCGACATAGTGCTCGCTCGCCCGCCCGCCTGTTCGTTTCGTCGGTTGGCTTAGGCATAC
645 CTCTGGCCGACGTAGTG-AC-C-CGCCCGCCCGCC---TCGTTTCGTCGGTTGGCTTAGGCATAC
21029104 GGAGTTCATTCCCAGTCTAA
704 GGAGTTCATTCCCAGTCTAA
21029124 CATCAAACCA
Statistics
Matches: 2985, Mismatches: 304, Indels: 189
0.86 0.09 0.05
Matches are distributed among these distances:
864 5 0.00
865 164 0.05
866 11 0.00
867 35 0.01
868 521 0.17
869 12 0.00
872 3 0.00
873 164 0.05
874 35 0.01
875 9 0.00
876 254 0.09
877 108 0.04
878 62 0.02
881 1 0.00
882 3 0.00
883 4 0.00
884 1 0.00
886 3 0.00
887 1 0.00
888 1 0.00
890 3 0.00
891 116 0.04
892 1 0.00
894 248 0.08
895 52 0.02
896 799 0.27
897 162 0.05
898 1 0.00
899 1 0.00
900 13 0.00
902 2 0.00
903 4 0.00
904 183 0.06
905 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
TCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCACATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCACCGGAGAACCTGACCGGCGGCA
TTAGGGTTCTGTCGATCAGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCT
CAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCAC
GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGCATCCCGTCTCTCTGG
CCGACGTAGTGACCCGCCCGCCCGCCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATAGAACAGACCGAGGGTTGCGGCAGCAGGATCAACAGCACATAGAGGGGGACCCG
ACCGATCCTCGGCTTGCGCATCCCGCCCTCTAGCCGACTGAGCGCCTGCACGCTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATCGAGTTCA
Found at i:21029725 original size:707 final size:708
Alignment explanation
Indices: 21028365--21029830 Score: 2275
Period size: 707 Copynumber: 2.1 Consensus size: 708
21028355 AGCGCCTGCA
* * * *** *
21028365 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAATTGGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAAACCAGACTA
* * * * *
21028430 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCA
66 AGGGATGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATAATTTTATTCACCGGGGCA
* **
21028495 CCATCACCGGAGAACCTAACCGACGGCATTGGGTGTCCGGTGATCGGGGGGGCCGAGGGGGGTGT
131 CCATCACCGGAGAACCTAACCGACGACATTGGGTGTCCGACGATCGGGGGGGCC-AGGGGGGTGT
* *
21028560 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAG
195 GCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAG
*
21028625 CCTTGAGAACCCATACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTACTGCCAGTAGCCATT
260 CCTTGAGAACCCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTACTGCCAGTAGCCATT
21028690 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTA
325 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTA
* **
21028755 GCTGATTACTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCGCAAAA
390 GCTGATTACTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTGGGCGCAAAA
* *
21028820 CTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
455 ATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGA
* *
21028885 AAACGAGTCTTCTTGCCATGAAACTTCATGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAG
520 AAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
21028950 CCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
585 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * *
21029015 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGT-GCTCGCTCGCCCGCCCGCC
650 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATA-TCGCCCGCCCGCCCGCCCACC
* *
21029074 TGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAAACCAGA-TC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAAACCAGACT-
* * **
21029138 AAGGGATGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGTAATTTTATTCGTCGGGGC
65 AAGGGATGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATAATTTTATTCACCGGGGC
** * * *
21029203 ACCATCGTCGGAGAACCTGACCGGCGACATTGGG-GTTCTGACGATCGGGGGGGCC-GGGGGGTG
130 ACCATCACCGGAGAACCTAACCGACGACATTGGGTG-TCCGACGATCGGGGGGGCCAGGGGGGTG
21029266 TGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCA
194 TGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT-CA
* * * *
21029331 A-CCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
258 AGCCTTGAGAACCCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTACTGCCAGTAGCCA
*
21029395 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAA-TTT
323 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AAGTTT
*
21029459 TTCA-CTGAATT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTAGGGC
387 TT-AGCTG-ATTACTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTT-GGGC
* *
21029522 -TAAAAATCCTTCCAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAA
449 GCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAA
*
21029586 AATAGAGAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATT
514 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATT
* **
21029651 TACAGGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAGGCACCTACCACC
579 TACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * **
21029716 CTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGTCCGAGTTATCGCCCGCCCGCCCGCCCACC
644 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATATCGCCCGCCCGCCCGCCCACC
*
21029781 CGCTCGTTTCGCCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
21029831 GATTGGATCA
Statistics
Matches: 690, Mismatches: 59, Indels: 18
0.90 0.08 0.02
Matches are distributed among these distances:
706 1 0.00
707 520 0.75
708 15 0.02
709 154 0.22
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (708 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATCAAACCAGACTA
AGGGATGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCATAATTTTATTCACCGGGGCA
CCATCACCGGAGAACCTAACCGACGACATTGGGTGTCCGACGATCGGGGGGGCCAGGGGGGTGTG
CACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGC
CTTGAGAACCCACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTACTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAG
CTGATTACTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTGGGCGCAAAAA
TCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATATCGCCCGCCCGCCCGCCCACC
Found at i:21029992 original size:26 final size:26
Alignment explanation
Indices: 21029963--21030013 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21029953 GGTTGACTTG
21029963 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21029989 GCATACGGAGTTCATTTCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
21030014 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21030911 original size:24 final size:25
Alignment explanation
Indices: 21030862--21030911 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
21030852 GTTGACTTAG
* *
21030862 GCATACGGAGTTCATTCCCAGTTAA
1 GCATACGGAGTCCATTCCCAGCTAA
21030887 GCATACGGAGTCCA-TCCCAGCTAA
1 GCATACGGAGTCCATTCCCAGCTAA
21030911 G
1 G
21030912 ATCGGTCCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 10 0.43
25 13 0.57
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (25 bp):
GCATACGGAGTCCATTCCCAGCTAA
Found at i:21031056 original size:898 final size:897
Alignment explanation
Indices: 21029211--21031795 Score: 3623
Period size: 898 Copynumber: 2.9 Consensus size: 897
21029201 GCACCATCGT
* * *
21029211 CGGAGAACCTGACCGGCGACATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCACACATG
1 CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC--GGGGGCCAGGGGGTGTGCACACATG
*
21029276 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCCAACCTTGAGAA
64 ATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
*
21029341 CTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
129 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-T
* * *
21029406 GAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAA-TTTTTCA-CTGAAT
193 TAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-AAGTTTTT-AGCTGAAG
* ** * * *
21029469 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAAAAAGTTTAGGGCTAAAAATCCTTC
256 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTT
* * * *
21029534 CAAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAGAACGAG
321 CAAAAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
21029599 TCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAA
386 TCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
21029664 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAGGCACCTACCACCCTATCGATCCACG
451 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACG
* *
21029729 GCTTGCGCATCCCGTCTCTTTGTCCGA-GTTA-TCGCCCGCCCGCCCGCCCACCCGCTCGTTTCG
515 GCTTGCGCATCCCGTCTCTCTGGCCGACG-TAGT-GCCCGCCCGCCCGCCCACCCGCTCGTTTCG
* * *
21029792 CCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCCAGGGTTGCAGC
578 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATTGGATCAGA-CCAGGGTTGCGGC
* * * * * * *
21029857 TGTAGGATTGATAGCACGCAGAGGGGGACCCGATTGTTCCCCGGCTTGCGCATCCCGCCCTTCTG
642 AGTAGGATCGATAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCACCCCTCTG
* *
21029922 GCCTGCTGAGCGCTCGCACGCTCGTTTCATGGGTTGACTT-GGCATACGGAGTTCATTCCCAGTC
707 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * ** * *
21029986 TAAGCATACGGAGTTCATTTCCAGTCTATGATCGGACCGGACCAAGGTTGGGGCAACACATGCTG
772 TAAGCATACGGAGTCCATTCCCAGTCTAAGATCGGACCAAACCAAGGCTGCGGCAACACATGCTG
* * *
21030051 GGCTGAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCATCGTCGTAGCATCAT
837 GGCTGAGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGCCACCATCGTCGGAGCATCAG
* *
21030112 CGGAGAACC-GAACCGACGGCATTGGGGTTCCGACGATCGGGGGCCAGGGGGTGTGCGCACATGA
1 CGGAGAACCTG-ACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCAGGGGGTGTGCACACATGA
** * * *
21030176 TGTGGGATGGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAAC
65 TGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
*
21030241 TCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTA
130 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT-
21030306 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTTT
194 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTTT
* ** * *
21030371 CTTGTGCATGAGAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
259 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTTCAA
* * * * *
21030436 AAAAATTTT-AAAAATCCCAAACTGCAAAAAGATTCAAAAATCGTGAAAAATAGAAAACGAGTCC
324 AAAAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
21030500 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATCAAAAT
389 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
21030565 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCT
454 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC-ACCTACCACCCTATCGATCCACGGCT
* * * * * *
21030630 TGCGCATCCCGTCTCTCTGGCCTACGTCGTGCCCGCCCGCCCGCTCGCCCTCTCATTTCGTCGGT
518 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGT
* **
21030695 TGGCTTAGGCATACGAAGTTCATTCCCAGACTAAGATCAGA-CAAGACCAAGGGTTGCGGCAGTA
583 TGGCTTAGGCATACGGAGTTCATTCCCAGACTAAGATTGGATC-AGACC-AGGGTTGCGGCAGTA
* * *
21030759 GGATCGACAGCACGGAGAGGGGGACCC-AGTCGATCCCCGGCTTGCACATCCCACCCCTCTGGTC
646 GGATCGATAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCACATCCCACCCCTCTGGCC
*
21030823 GGCTGAGCGCCCGCGCGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-TAA
710 GGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
21030887 GCATACGGAGTCCA-TCCCAG-CTAAGATCGGTCCAAACTGGAGGGCTGCGGTAGCACATGGCTG
775 GCATACGGAGTCCATTCCCAGTCTAAGATCGGACCAAAC--CAAGGCTGCGGCAACACAT-GCTG
** * *
21030950 TTC-GCGGCATGTGCTGGTG-T-CGTATTTTC-TCGCCAGGGCCACCATCGTCGGAGCATC-G
837 GGCTGAGGCATGTGCTGGTGCTGCAT-TTTTCTTCGCC-GGGCCACCATCGTCGGAGCATCAG
* * * *
21031008 CGGGATAACCTG-CCGGCGGCATTGGGGTTTCCGATGATCGACGGGCCA-GGGGTGTGCACAGAT
1 C-GGAGAACCTGACCGGCGGCATTGGGG-TTCCGACGATCG-GGGGCCAGGGGGTGTGCACACAT
21031071 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
63 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGA
* *
21031136 ACTCACACCCCCTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTC
128 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-
* *
21031201 TTAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGT
192 TTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGT
* *
21031266 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGACCAAAACTCCTTTC
257 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTTC
21031331 AAAAAAATTTTAAAAAATCTCGAA-T-CATAAAATGTTTCAAAAATCATGAAAAATAGAAAACGA
322 AAAAAAATTTTAAAAAATCTCGAACTGCA-AAAA-GTTTCAAAAATCATGAAAAATAGAAAACGA
*
21031394 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
385 GTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
** * * * *
21031459 AAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCAACTACCTTATCGATCCAC
450 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCAC
* * * * * *
21031524 GGCTTG-ACATCCCATCTCTCTAGCCGACGTAGTGCCCGCCCGCCCACCCTCCCGCTCGTTTCAT
514 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGT
* *
21031588 CTGTCGGCTTAGGCATACGGAGTTCATTCCCA-ATCTAAGATTGGATCAGACCGAGGGTTGCGGC
579 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGA-CTAAGATTGGATCAGACC-AGGGTTGCGGC
* * * * ** * * *
21031652 AGCAGGATCGGTAGCATGCAAAGGGGGACCCGATCGATCGTCGACTTGCTCATCCCACCCCTCTA
642 AGTAGGATCGATAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCACCCCTCTG
* * * * **
21031717 GCCGGCTGAGTGCCCGCACGTTCATTTCATGGGTTGACGTAGGCATACGGAGTTCATTTTCAGTC
707 GCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
21031782 TAAGCATACGGAGT
772 TAAGCATACGGAGT
21031796 TCAGTCTAAG
Statistics
Matches: 1499, Mismatches: 156, Indels: 61
0.87 0.09 0.04
Matches are distributed among these distances:
896 38 0.03
897 533 0.36
898 598 0.40
899 296 0.20
900 1 0.00
901 33 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGCCAGGGGGTGTGCACACATGAT
GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGTTTTT
TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTTCAAAA
AAATTTTAAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
CATTGGCACACAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGC
GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGG
CTTAGGCATACGGAGTTCATTCCCAGACTAAGATTGGATCAGACCAGGGTTGCGGCAGTAGGATC
GATAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGGCTGA
GCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
GGAGTCCATTCCCAGTCTAAGATCGGACCAAACCAAGGCTGCGGCAACACATGCTGGGCTGAGGC
ATGTGCTGGTGCTGCATTTTTCTTCGCCGGGCCACCATCGTCGGAGCATCAG
Found at i:21031840 original size:179 final size:182
Alignment explanation
Indices: 21031634--21031982 Score: 443
Period size: 184 Copynumber: 1.9 Consensus size: 182
21031624 AAGATTGGAT
* * * * * **
21031634 CAGACCGAGGGTTGCGGCAGCAGGATCGGTAGCATGCAAAGGGGGACCCGATCGATCGTC-GACT
1 CAGACCGAGGGTTACGACAGCAGGATCGGTAGCACGCAAAGGGGGACCCGACCAATCCCCAGACT
* ** **
21031698 -T-GCTCATCCCACCCCTCTAGCCGGCTGAGTGCCCGCACGTTCATTTCATGGGTTGACGTAGGC
66 CTAGCTCATCCCACCCCTCTAGCCGGCTAAGCACCCGCACACTCATTTCATGGGTTGACGTAGGC
**
21031761 ATACGGAGTTCATTTTCAGTCTAAGCATACGGAGTTCAGTCTAAGATCAAAC
131 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAGTCTAAGATCAAAC
* * *
21031813 CAGACCGAGGGTTACGACAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACCAATCCCCAGCCT
1 CAGACCGAGGGTTACGACAGCAGGATCGGTAGCACGCAAAGGGGGACCCGACCAATCCCCAGACT
* * * * * *
21031878 GCTCAGCTCATCCCGCCTCTCTGGTCGGCTAAGCACCCGCACACTCATTTCGTGGGTTGACTTAG
66 -CT-AGCTCATCCCACCCCTCTAGCCGGCTAAGCACCCGCACACTCATTTCATGGGTTGACGTAG
*
21031943 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCA
129 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
21031983 TTCCCAGTCT
Statistics
Matches: 141, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
179 51 0.36
180 3 0.02
182 1 0.01
184 86 0.61
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (182 bp):
CAGACCGAGGGTTACGACAGCAGGATCGGTAGCACGCAAAGGGGGACCCGACCAATCCCCAGACT
CTAGCTCATCCCACCCCTCTAGCCGGCTAAGCACCCGCACACTCATTTCATGGGTTGACGTAGGC
ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAGTCTAAGATCAAAC
Found at i:21031979 original size:26 final size:26
Alignment explanation
Indices: 21031943--21031995 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21031933 GTTGACTTAG
21031943 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21031969 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21031995 G
1 G
21031996 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21032871 original size:26 final size:26
Alignment explanation
Indices: 21032835--21032887 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21032825 GTTGACTTAG
*
21032835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21032861 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21032887 G
1 G
21032888 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Done.