Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 122 of 195
Found at i:21033775 original size:26 final size:26
Alignment explanation
Indices: 21033739--21033791 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21033729 GTTGACTTAG
* *
21033739 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21033765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21033791 G
1 G
21033792 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21033901 original size:904 final size:891
Alignment explanation
Indices: 21031797--21033982 Score: 3024
Period size: 894 Copynumber: 2.4 Consensus size: 891
21031787 ATACGGAGTT
* * *
21031797 CAGTCTAAGATCAAACCAGACCGAGGGTTACGACAGTAGGATCGGTAGCACGCAGAGGGGGACCC
1 CAGTCTAAGATCAGACCAGA-CGAGGGTTGCGATAGTAGGATCGGTAGCACGCAGAGGGGGACCC
* * * * * * *
21031862 GACCAATCCCCAGCCTGCTCAGCTCATCCCGCCTCTCTGGTCGGCT-AAGCACCCGCACACTCAT
65 GACCGA--CCC--CCGGCT-TGCGCATCCCGCCTCTCTGGCCGGCTGAA-CACCCGCACGCTCGT
*
21031926 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGT
124 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * **
21031991 CTAAGATCAGATCGGACCGAGGGTT-AGGCAGCACATGCTGGGC-TGGGCATGTGCTGGTGCCGC
189 CTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGTAGC
* * * * *
21032054 ATTTTTCTTCACCTGCGCACCATCGTCGGAGCGTCACCGGAGAACCTGACCGGCGGCATTGGGGT
254 ATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATT-AGGT
* * * *
21032119 TCCGACGATCGGACGGGCTGGGGGGTGTGCGTACATGATGTGCCATGGGTGCTGGTACTTGGCCC
318 TCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
21032184 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAGAGCATTTGAGA
382 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAGAGCATTTGAGA
21032249 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTC
447 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTC
* **
21032314 ACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGGTAACAAAAATACAAGG
512 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* **
21032379 ATCACGTCTACCAATTTTGGGCTGAAAACTCTCTCTGAAAAAATTTTAAAAAATCCCGAACCGCA
577 ATCACGTCTACCAATTTGGGGCTGAAAACTCTCTCAAAAAAAATTTTAAAAAATCCCGAACCGCA
** * *
21032444 AAAATTTTGAAAATCGTGAAAAATACAAAATGAGTCGTCTATCCACGAAACTTCACGTGAAGGCT
642 AAAATTTAAAAAATCATGAAAAATACAAAACGAGTCGTCTATCCACGAAACTTCACGTGAAGGCT
* *
21032509 TAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATG
707 TAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAAAAATATGAAGATG
* *
21032574 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTG
772 TGCCTAAACCCACCTACCACCATATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTG
* * *
21032639 GTGCCCGCCCGGCCGCTCATTTCGTCGGTTTGCTTAGGCATACGGAGTTCATTCC
837 GTGCCCGCCCGGCCGCTCATTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCC
* * * * *
21032694 CAGTCTAAGATCGGACCAGACTGAGGGTTGCGATAGCAGGATCAGCAACACGCAGAGGGGGACCC
1 CAGTCTAAGATCAGACCAGAC-GAGGGTTGCGATAGTAGGATCGGTAGCACGCAGAGGGGGACCC
* * * * *
21032759 GACCGATCCCCGGCTTGTGCATCCCACCTCTCTGGCCGGCTGAGCTCCCGCACGCTCGTTTCGTG
65 GACCGACCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAACACCCGCACGCTCGTTTCGTG
*
21032824 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
130 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * *
21032889 TCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCTTGTGCT-G-GTACCATGTTT
195 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGTAGCA--TTT
* *
21032952 TTCTTTGCCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTACGGTTCCA
258 TTCTTCGCCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTA-GGTTCCG
* *
21033017 ATGATCGAGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
322 ACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* *
21033082 ATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
386 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAGAGCATTTGAGATTTT
21033147 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAA
451 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * * *
21033212 AATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAGAAATACAAGGGTCA
516 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* * *
21033277 CGTCTACCAGGTTTGGGGCT-AAAACTC-CTTCCAAAAAAAATTTTAAAAAATCCTGAACCGTAA
581 CGTCTACCA-ATTTGGGGCTGAAAACTCTC-T-CAAAAAAAATTTTAAAAAATCCCGAACCGCAA
** * * *
21033340 GAGGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCT-TGCCATGAAACTTCACGTGATGGC
643 -AAATTTAAAAAATCATGAAAAATACAAAACGAGTCGTCTAT-CCACGAAACTTCACGTGAAGGC
*
21033404 TTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAAAAATATGATGAT
706 TTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAAAAATATGAAGAT
* * **
21033469 GTGCCTAAACTCACCTACCACCATATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCTGGTGT
771 GTGCCTAAACCCACCTACCACCATATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* *
21033534 AGAGCCTGTCCACCCGCCC-GCCTGCTCGTTTCGTCGATTGGCTTAGGCATATGAAGTTCATTCC
836 -G-G--TG----CCCGCCCGGCC-GCTCATTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCC
* * *
21033598 CATTCTAAGATCAGACCTGATCGAGGGTTGCGGTAGTAGGATCGGTAGCACGCAGAGGGGGACCC
1 CAGTCTAAGATCAGACCAGA-CGAGGGTTGCGATAGTAGGATCGGTAGCACGCAGAGGGGGACCC
** * * *
21033663 GGTCGACCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGTACGCTCGCTTT-GT
65 GACCGACCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAACACCCGCACGCTCG-TTTCGT
* *
21033727 GGGTTGACTTAGGCATATGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
129 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * ** *
21033792 ATCGGACCGAACCAAGGGTTGCGGCAGCACGTGCTGCACTTGCGCATGTGCTGGTGTAGCATTTT
194 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGTAGCATTTT
* * ** * *
21033857 TCTTCGGCGGGGCACCATCACCGGAGCATCACAGGAGAACCTGACCGACGGCATTGAGGTTCCGA
259 TCTTCGCCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATT-AGGTTCCGA
* * * *
21033922 CGAACGGGGGGTCGGGGCGGGTGTGCGCACATGATGTGTGATGGGTACTGGTACTTGGCCC
323 CGATCGGGGGG-CCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
21033983 GCATACGGAG
Statistics
Matches: 1133, Mismatches: 127, Indels: 50
0.86 0.10 0.04
Matches are distributed among these distances:
892 121 0.11
893 25 0.02
894 329 0.29
895 40 0.04
896 174 0.15
897 61 0.05
898 1 0.00
900 2 0.00
903 8 0.01
904 321 0.28
905 46 0.04
906 5 0.00
ACGTcount: A:0.24, C:0.25, G:0.26, T:0.25
Consensus pattern (891 bp):
CAGTCTAAGATCAGACCAGACGAGGGTTGCGATAGTAGGATCGGTAGCACGCAGAGGGGGACCCG
ACCGACCCCCGGCTTGCGCATCCCGCCTCTCTGGCCGGCTGAACACCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
CGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGAGCATGTGCTGGTGTAGCATTTTTC
TTCGCCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGTTCCGACGA
TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
CCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
TTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT
ACCAATTTGGGGCTGAAAACTCTCTCAAAAAAAATTTTAAAAAATCCCGAACCGCAAAAATTTAA
AAAATCATGAAAAATACAAAACGAGTCGTCTATCCACGAAACTTCACGTGAAGGCTTAAGGGACC
ATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAAC
CCACCTACCACCATATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTGGTGCCCGCC
CGGCCGCTCATTTCGTCGATTGGCTTAGGCATACGAAGTTCATTCC
Found at i:21034019 original size:26 final size:26
Alignment explanation
Indices: 21033983--21034061 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
21033973 TACTTGGCCC
21033983 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21034009 GCATACGGAGTTCATTCCCAGTCAAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21034035 GCATACGGAGATCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21034061 G
1 G
21034062 ATCAGATCGG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.27, G:0.20, T:0.24
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21035731 original size:26 final size:26
Alignment explanation
Indices: 21035695--21035747 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21035685 GTTGACTTAG
* *
21035695 GCATACGGAGTACATTCCTAGTCTAA
1 GCATACGGAGTACATTCCCAGTATAA
* *
21035721 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTACATTCCCAGTATAA
21035747 G
1 G
21035748 ATCAGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTATAA
Found at i:21036229 original size:27 final size:26
Alignment explanation
Indices: 21036172--21036229 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
21036162 TCCATCCAAA
* **
21036172 AAAAATTTTTAAAAATCCTGAACCAT
1 AAAAAGTTTTAAAAATCCTGAAAAAT
* *
21036198 AAAAAGTTTTGAAAATCGTGAAAAAT
1 AAAAAGTTTTAAAAATCCTGAAAAAT
21036224 AGAAAA
1 A-AAAA
21036230 CGAGTCGTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 22 0.85
27 4 0.15
ACGTcount: A:0.55, C:0.09, G:0.10, T:0.26
Consensus pattern (26 bp):
AAAAAGTTTTAAAAATCCTGAAAAAT
Found at i:21036320 original size:900 final size:883
Alignment explanation
Indices: 21034076--21036453 Score: 3435
Period size: 887 Copynumber: 2.7 Consensus size: 883
21034066 GATCGGACCG
* *
21034076 ACGGCATTTGGGTTCCGATGATCGGGGGGCCGGGGGTGTG-CGCACATGATGTGCCATC-GGTGC
1 ACGGCATTAGGGTTCCGATGATCGGGGGGCCGGGGGTGTGTCGCACATGATGTG-CAACGGGTGC
*
21034139 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACGCACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
21034204 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
**
21034269 TTTTCAAATGGTCAGGAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
21034334 CAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAAATCCTTCCAAAAAAATTTTAAAAA
260 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAA
* * * *
21034399 ATCCCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAAC
325 ATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
21034464 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
390 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
** *
21034529 GAAATATGAAGATGTGCCTAAACCCACCTACCAGTCTATCGAAT-CATC-GCTTGCACATCCCGT
455 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG-ATCCA-CGGCTTGCGCATCCCGT
* *
21034592 CTCTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCAT
518 CTCTCTGGCCGGCGTAGTGCCCG----CCCG-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * *
21034657 ACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAGCACGTAAAGGGGGAC
578 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACGTAAAGGGGGAC
* * * * * * *
21034722 TCGGTCGATCCCTGGCTAGCGCATCCCGCCCCTCTGGCCGGCTGATCGGTCGCACGCTCGTTTCA
643 CCGCTCGATCCCTGGCTAGCACATCCCGCCCCTCTGGCCGGCTGAGCGCTCACACACTCGTTTCA
* * *
21034787 TGCGTTGACATAGGCATATGGAGTTCATTCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAG
708 TGCGTTGACATAGGCATACGGAGTACATTCCAGTCTAAGCATACGAAGTTCATTCCCAGTATAAG
* * * * **
21034852 ATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCGTTTT
773 ATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTGCTGGTGCCACAATTT
** * * **
21034917 TCTTCGCTGGGGCACCATCGTCGGAGCATCGCTGAGAACCTGACCG
838 TCTTCGCCAGGGCACCATCGTCGGAGCATCCCGGAGAACCTGACAA
* * * *
21034963 ACGACTTTAGGG-TCCGACGATCGGGGGGCCGGGGG-GTGTGCGCACATGATGTGCAATGGGTGC
1 ACGGCATTAGGGTTCCGATGATCGGGGGGCCGGGGGTGTGT-CGCACATGATGTGCAACGGGTGC
*
21035026 TGGTACTTGGTCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
21035091 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATGGGGACACTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
21035156 TTTTCAAATGGTCGCAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
21035221 AAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATGCTTCCAAAAAAATTTAAAAAA
260 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAA
* *
21035286 ATCTCT-AACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
325 ATC-CTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * ** *
21035350 CTTGACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATATCTTTGGCATGC
389 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
*
21035415 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTGGCGCATCCCGTC
454 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
21035480 TCTCTAGCCGGCGTAGTGCCCGCCCGCTCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
519 TCTCTGGCCGGCGTAGTGCCCGCCCGC-CGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * *
21035545 GTTCATTCCCAGTCTAATATCAGACCGGACCGAGGGTTGTGGTAGTAGGATCGACAGCATGCAGA
583 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGT-G--GCA-G--C-AC-G--T--AAA
*
21035610 GGGGGACCCGACT-GAT-CCTCGGCTTA-TACATCCCGCCCCTCTGGCCGGCTGAGCGCTCACAC
636 GGGGGACCCG-CTCGATCCCT-GGC-TAGCACATCCCGCCCCTCTGGCCGGCTGAGCGCTCACAC
** * * * *
21035672 ACTCGTTTGGTGGGTTGACTTAGGCATACGGAGTACATTCCTAGTCTAAGCATATGGAGTTCATT
698 ACTCGTTTCATGCGTTGACATAGGCATACGGAGTACATTCC-AGTCTAAGCATACGAAGTTCATT
* * *
21035737 CCCAGTATAAGATCAGACTGGATCGAGGGTTGCGACAGCCCATGCTGGGCTCGGACATGTGCTGG
762 CCCAGTATAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTGCTGG
*
21035802 TGCCACAATTTTCTTCGCCAGGGCACTATCGTCGGAGCATCACCGGAGAACCTGACAA
827 TGCCACAATTTTCTTCGCCAGGGCACCATCGTCGGAGCATC-CCGGAGAACCTGACAA
* * * * * *
21035860 ACGGCATTGGGGTTCCGGTGATCGGGGGGAACGGGGGTGTGTCCACACATGATGTTCGACGGGTG
1 ACGGCATTAGGGTTCCGATGATCGGGGGG-CCGGGGGTGTGT-CGCACATGATGTGCAACGGGTG
*
21035925 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA-CCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
21035989 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGAAACT
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
21036054 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGTTGAATTTTTTTGTGCATGCCT
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
21036119 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAAATTTTTAA
259 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC-AAAAAAATTTTAAA
** * *
21036184 AAATCCTGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCCATCAA
323 AAATCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* **
21036249 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCACA
388 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
21036314 CAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGT
453 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
21036379 CTCTCTGGCCGGCGTAGT-------C-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
518 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
21036436 GTTCATTCCCAGTCTAAG
583 GTTCATTCCCAGTCTAAG
21036454 CATACGGAGT
Statistics
Matches: 1338, Mismatches: 124, Indels: 54
0.88 0.08 0.04
Matches are distributed among these distances:
882 1 0.00
883 75 0.06
884 1 0.00
885 3 0.00
886 29 0.02
887 468 0.35
888 1 0.00
889 1 0.00
890 2 0.00
891 54 0.04
892 1 0.00
893 2 0.00
894 3 0.00
895 82 0.06
896 117 0.09
897 21 0.02
898 14 0.01
899 182 0.14
900 281 0.21
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (883 bp):
ACGGCATTAGGGTTCCGATGATCGGGGGGCCGGGGGTGTGTCGCACATGATGTGCAACGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAA
TCCTGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACGTAAAGGGGGACCCGCTCGA
TCCCTGGCTAGCACATCCCGCCCCTCTGGCCGGCTGAGCGCTCACACACTCGTTTCATGCGTTGA
CATAGGCATACGGAGTACATTCCAGTCTAAGCATACGAAGTTCATTCCCAGTATAAGATCAGACC
GGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGACATGTGCTGGTGCCACAATTTTCTTCGCC
AGGGCACCATCGTCGGAGCATCCCGGAGAACCTGACAA
Found at i:21036463 original size:26 final size:26
Alignment explanation
Indices: 21036427--21036479 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21036417 GTTGGCTTAG
*
21036427 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21036453 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21036479 G
1 G
21036480 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21037066 original size:721 final size:727
Alignment explanation
Indices: 21035673--21037179 Score: 2208
Period size: 721 Copynumber: 2.1 Consensus size: 727
21035663 CGCTCACACA
* * * * * *
21035673 CTCGTTTGGTGGGTTGACTTAGGCATACGGAGTACATTCCTAGTCTAAGCATATGGAGTTCATTC
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* ** * * * * *
21035738 CCAGTATAAGATCAGACTGGATCGAGGGTTGCGACAGCCCATGCTGGGCTCGGACATGTGCTGGT
66 CCAATATAAGATCAGACCAGATCCAGGCTTCCGACAGCACATGCTGGGCTCGGACATGTGCTAGT
* *
21035803 GCCACAATTTTCTTCGCCAGGGCACTATCGTCGGAGCATCACCGGAGAACCTGACAAACGGCATT
131 GCCACAATTTTCTTCGCCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACAAACGACATT
* * *
21035868 GGGGTTCCGGTGATCGGGGGGAACGGGGGTGTGTCCACACATGATGTTCGACGGGTGCTGGTACT
196 GGGGTTCCGGCGATC---GGG-A-GGGGGTGTGT-CACACATGATGTGCGACGGCTGCTGGTACT
21035933 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATT
255 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATT
* * * *
21035998 TGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGAAACTTTTTTCAAA
320 TGAGATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTAAAATGGGGAAACTTCTCTCAAA
* * * *
21036063 TGGTCACAAAATCTTGTACACTTCGAGCTTTTAGTTGAATTTTTTTGTGCATGCCTACAAAAATA
385 TGGTCACAAAATCTTATACACTTCGAGCTTTTAGTTGAATTTTTTTGTGCATGACAAAAAAAATA
* *
21036128 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAAAATTTTTAAAAATCCTGA
450 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCATCCAAAAAAAATTTTAAAAAATCCTGA
* **
21036193 ACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCCATCAAACTTCACGT
515 ACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCCATCAAACTTCACGT
21036258 GAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
580 GAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
*
21036323 GAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGC
645 GAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
21036388 CGGCGTAGT-CCCGCCCG
710 CGGCGTAGTCCCCGCCCG
21036405 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
* * *
21036470 CCAATCTAAGATCAGACCAGA-CCAGGCTTCCTG-CAGTACATGCTGGGCTCGGGCATGTGCTAG
66 CCAATATAAGATCAGACCAGATCCAGGCTTCC-GACAGCACATGCTGGGCTCGGACATGTGCTAG
* * * * * *
21036533 TGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCCCGGAGAACCTGA-ACGACGACA
130 TGCCACAATTTTCTTCGCCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACA-AACGACA
* *
21036597 TTGGGGTTCCGGCGATC-GG-GGGGGTGTGT-GCACATGATGTGCGATGGCTGCTGGTACTTGGC
194 TTGGGGTTCCGGCGATCGGGAGGGGGTGTGTCACACATGATGTGCGACGGCTGCTGGTACTTGGC
* *
21036659 CCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCACCTTAAAGAGCATTTGA
259 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC-CCTTAAAGAGCATTTGA
* * * *
21036724 GATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTTTAAAATGGTGACACTTCTCTCAAATGG
323 GATTTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTAAAATGGGGAAACTTCTCTCAAATGG
*
21036789 TCACAAAATCTTATACACTTCGAGTTTTTAGCTT-AA-TTTTTTGTGCATGACAAAAAAAATACA
388 TCACAAAATCTTATACACTTCGAGCTTTTAG-TTGAATTTTTTTGTGCATGACAAAAAAAATACA
* *
21036852 AGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCC-GAAAAAATTTTAAAAAAT-CTCGAA
452 AGGATCACGTCTACCAAGTTTGGGGCCAAAACACCATCCAAAAAAAATTTTAAAAAATCCT-GAA
* * * * *
21036915 TCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTG
516 CCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCCATCAAACTTCACGTG
* **
21036980 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
581 AAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCACACAGAAATATG
*
21037045 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
646 AAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
*
21037110 GGCGTAGTGCCCACCCGTCCG
711 GGCGTAGT---C-CCCGCCCG
* * *
21037131 CTGGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
21037180 ATTGGACGAA
Statistics
Matches: 699, Mismatches: 66, Indels: 26
0.88 0.08 0.03
Matches are distributed among these distances:
720 2 0.00
721 209 0.30
722 135 0.19
723 105 0.15
724 12 0.02
726 53 0.08
727 2 0.00
730 1 0.00
731 103 0.15
732 77 0.11
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.26
Consensus pattern (727 bp):
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAATATAAGATCAGACCAGATCCAGGCTTCCGACAGCACATGCTGGGCTCGGACATGTGCTAGT
GCCACAATTTTCTTCGCCAGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACAAACGACATT
GGGGTTCCGGCGATCGGGAGGGGGTGTGTCACACATGATGTGCGACGGCTGCTGGTACTTGGCCC
TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGAGAT
TTTACAGGTTTGCTGCCAATAGCAATTAAAGTGTCTAAAATGGGGAAACTTCTCTCAAATGGTCA
CAAAATCTTATACACTTCGAGCTTTTAGTTGAATTTTTTTGTGCATGACAAAAAAAATACAAGGA
TCACGTCTACCAAGTTTGGGGCCAAAACACCATCCAAAAAAAATTTTAAAAAATCCTGAACCACA
AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTCCCATCAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
GTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
AGTCCCCGCCCG
Found at i:21038757 original size:885 final size:880
Alignment explanation
Indices: 21037468--21042287 Score: 6150
Period size: 893 Copynumber: 5.5 Consensus size: 880
21037458 TAGGGTTTAA
* * * *
21037468 ACGATCGGGGGGGCTGGGGGGTGTACGCACATGATGTGCAATGGGTGCTAGTACTTGGCCCTTAT
1 ACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
*** * *
21037533 ATTGGCCTTATATCCCTCATCAAACCTTGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTT
65 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
21037598 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
130 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
21037663 AATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCA
195 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
21037728 CATCTACCAGGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCATAAAAA
260 CATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAA
* *
21037793 GTTTCAAAAATCGTAAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
325 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
*** * *
21037858 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAATAAAAATATCAAGATGTGC
390 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
* * *
21037923 CTAAACCCACCTACCACCATATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGGCGGCGTAGTG
455 CTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTG
* * * * *
21037988 CCCGCCCGCCCGCCCGCTCGTTTCGTCGATTAGCTTAGGCATACGGAGTTCATTACTAGTCTAAG
520 CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
** *
21038053 ATCGAACCGGATCGAGGGTTGCGGCAGCAGGATCGACAGCGCGCAGAGGGGGACCCGGCCGATCC
585 ATCGAACCGGA-CGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGGCCAATCC
* * * * *
21038118 CCAGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACACTCATTTCGTGGGCTGACTT
649 CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* *
21038183 AGGCATACGGAGTTCATTCCCTGTCTAAGCATATGAAGTTCATTCCTAGTCTCAGATCGGACCGG
714 AGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCC-AGT-TAAGATCGGA---G
* * * *
21038248 ATCGAGGGTTGCGGTAGCATATGCTAGGCTCGAGCATGTGCTGGTGTCGAATTTTTCTTCGTCGG
774 ATCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTG-CGAATTTTTCTTCATCGA
* * *
21038313 GGCACCATTACCGAAGAACCTGATCGGCGGCATTGACGTTTCG
838 GGCACCATTACCGAAGAACCTGACCGGCGGCATTGAGGTTCCG
* *
21038356 ACGATCGGGGGGCCGGGGGGTGTGTGCACATGATGTGCGGTGGGTGCTGGTACTTGGCCCTTATA
1 ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
21038421 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTA
66 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
21038485 CAGGTTTGCTGCCAGTAGCCATTTAAGTGTCTAAAATGAGGACACTTTTTTCGAATGGTCACAAA
131 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
21038550 ATCTTGTACACTTCGAGTTTTTAGTTTAATTGTTTTGTGCATGCCAACAAAAATACAAGGAT-AC
196 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
21038614 ATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAG
261 ATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAG
*
21038679 TTTCGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAG
326 TTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAG
21038744 GGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
391 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
*
21038808 TAAACCCACCTACCACCCTATCGATCCCTGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGT--
456 TAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGC
* * *
21038871 --GCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCAGACAGAGTTCATTCCCAGACTAAGA
521 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
* * * * * * *
21038934 TC-AGACTGGACTGAGGGTTGTGGCAGTAGGATCGGCTGCACGAAGAGGGGGACCCGGCCAATCC
586 TCGA-ACCGGAC-GAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGGCCAATCC
* * * * *
21038998 CTGGCTTGCGCATCCCGCCCATCCGACCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
649 CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * *
21039063 AGGCATACGGAATTTATTCCCAG--T---C---T-AAG---A-T-C-G--AACA--GGA-AT-GA
714 AGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCAGTTAAGATCGGAGATCGA
* * * * *
21039107 GGGTTGCGGTAGTACATGCTGGGCTCGAGCATGTGCTGGTGCCGTATTTCTCTTCACCGAGGCAA
779 GGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTG-CGAATTTTTCTTCATCGAGGCAC
* *
21039172 CATCGT-CAG-AGAACTTGACCGGCGGCATTTG-GGTTCCG
843 CAT--TACCGAAGAACCTGACCGGCGGCA-TTGAGGTTCCG
** * * * * * *
21039210 GTGAACGGGGGGTCGGGTGTTGTGCGCACATGATGTGCGATGGATGCTGGTACCTGGCCCTTATA
1 ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
21039275 TTGGCCCCCTATCCCTCATCAAAACCTCGAGAACTCACACCCCGTTAAAGAGCATTTGAGATTTT
66 TTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
21039340 ACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAGATGGGGACACTTTTTTCAAATGGTCACAA
130 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
*
21039405 AATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-A
195 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
21039469 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCACAAAAA
260 CATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAA
**
21039534 GTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
325 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAA
*
21039599 GGGACCATTGTACGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
390 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGC
*
21039664 CTAAACGCACCTACCACCCTATCGATCTC-TGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGT
455 CTAAACCCACCTACCACCCTATCGATC-CATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGT
* * * * *
21039728 ----GCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAGGCAGACAGAATTCATTCCCAGACTAA
519 GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * * * *
21039789 GATTGGACTGGACCAAGGGTTGTGGCAGTAGGATCGGCTGCATGCAGAGGGGGACCCGGCCAATC
584 GATCGAACCGGA-CGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGGCCAATC
* * * * * * * *
21039854 CCCGGCTTGCGTATCCTGTCCATCTGGCTGACTGAGCGCCCACACGCTCGTTTCATGGGATGACT
648 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT
* * *
21039919 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTATAAGATCGAACAG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATT-CCAGT-TAAGATCG--GA-
* * * * * * * *
21039984 GAACAAGGGTTGCGGCAGTACATGCTAGGCTCGAGCATGTGCTGGTGCCATATTTCTCTTCACCG
773 GATCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCGA-ATTTTTCTTCATCG
* *
21040049 AGGCACCATCGT-CAG-AGAACCTGACCAGCGGCATT-AGGGTTCCG
837 AGGCACCAT--TACCGAAGAACCTGACCGGCGGCATTGA-GGTTCCG
* * * * * * *
21040093 ATGATCGGGGTGTCAGGTGGAGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATA
1 ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * *
21040158 TTGGCCCCCTATCCCTCTTCAAACCTTGAGAACTCACACCCCCCTTAAAGAGCATTTAAGATCTT
66 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTT
21040223 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA-TTATTTTCAAATGGTCACA
130 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT-TTTTCAAATGGTCACA
21040287 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
194 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * *
21040352 ACATCTACCTAGTTTGGGGCCAAAACACCCTCCAAAAAAATTTTAAAAAATCCCAAACCGTA-AA
259 ACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACC--ACAA
* * * * *
21040416 AAAGTTACAAAAATCATTAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
322 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCT
* *
21040481 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGCAGAAATATTAAGATG
387 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * * * * * *
21040546 TGCCTAAACCTACCTACCACTCTATTGATCCATGGCTTACGCATCCCGTCTCTTTGGGCGACGTA
452 TGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTA
* * * * ** *
21040611 GTGCCCGCCAGCCTGGCCGCCAGCTCATTTTGTTAGTTGGCTTAGGCATACAGAGTTCATTCCTA
517 GTGCCCG-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCA
* * * * *
21040676 GTCTAAGAACGGACCGGATCCAGGGTTGCGGCAGCAGGATCGATAGCATGCAGAGGGGGACTCGG
578 GTCTAAGATCGAACCGGA-CGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGG
* * * * * * *
21040741 TCAATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTAAGCACCTGCACGCTTGTTTCGTGGG
642 CCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
21040806 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATC
707 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCA-TTCCAGT-TAAGATC
* * *
21040871 GGATCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCAAGTGCTGGTGCCGTATTTTTCT
770 GG---AGATCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTG-CGAATTTTTCT
** * * * * *
21040936 TTTTCGAGGCACCATCATC-AGACAACCAGACCGACGGCATTG-GTGTTCCG
831 TCATCGAGGCACCATTACCGA-AGAACCTGACCGGCGGCATTGAG-GTTCCG
* *
21040986 ACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTA
1 ACGATC-GGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
21041051 TATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
64 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
21041116 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACA
129 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
21041181 AAATCTTGTAAACTTTGAATTTTTAGCTGAATTTTTTTGCT-CATG-CAACAAAAATACAAGGAT
194 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCCAACAAAAATACAAGGAT
* * * *
21041244 CACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAATTTTAAAAAATC-CTTAA-CAGCA
258 CACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTC-GAACCA-CA
* * *
21041307 AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
321 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGC
*
21041372 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCATGCAGAAATATGAAGAT
386 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
* * * *
21041437 GTGCCTAAACCCACCTACCACCCTATCGATCCCTAGCTTGCGCATCCCGTCTCTCTAACCGACGT
451 GTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGT
* * * ** *
21041502 AGTGCCCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTTATGTATATGGAGTTTATTCCCAGTC
516 AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTC
* * * **
21041567 TAAGATC-AGACCGGACTGAGGGTTGCGGTAGCAGGACCGACAGCATGTAGAGGGGGACCCGATC
581 TAAGATCGA-ACCGGAC-GAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGGCC
* * * * * * *
21041631 GATCCCCGGCTTACGCATCTCGCCCCGCTGGCTGACTGAGCGCCTGCACGCTCATTTCGTGGGTT
644 AATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTT
*
21041696 GACTTACGCATACGGAGTTCATTCCCAG--T---C---T-AAG---A-T-CAG---AG--C--AG
709 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCAGTTAAGATCGGAG
* * * * * * *
21041740 ATCGAGGGTTACGGCAGCAGATGCTGGGCTC-AGGCAAGTACTGGTGCCATATTTTTCTTCGTCG
774 ATCGAGGGTTGCGGTAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCGA-ATTTTTCTTCATCG
* * * *
21041804 GGGCACCATCTTCGGAGCATCGTCAGAGAACCTTACCGGCGGCATTGGGGCTCCG
837 AGGCACCA--TT---A-C--CG--A-AGAACCTGACCGGCGGCATTGAGGTTCCG
* * *
21041859 ACGAT--------CGGGGGGTGTGCACACATGATGTGTGATGGGTGTTGGTACTTGGCCCTTATA
1 ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
21041916 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
66 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
21041981 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTGACAAA
131 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
21042046 ATGTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATTCCAACAAAAATACAAGGATCAC
196 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
** * * *
21042110 ATCTACCAAGTTTGGGGTGAAAACACCTTCCAAAAAAAATTTTTAAAAATC-CTGAACCGCAAAA
261 ATCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTTAAAAAATCTC-GAACCACAAAA
* * *
21042174 AGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
324 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTA
*
21042239 AGGGACCATTGTATGAATTTACAAGCCATAGAAATGGCATTGGCATGCA
389 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
21042288 CCTAAACCCA
Statistics
Matches: 3490, Mismatches: 351, Indels: 206
0.86 0.09 0.05
Matches are distributed among these distances:
854 156 0.04
855 24 0.01
856 298 0.09
857 287 0.08
858 2 0.00
859 4 0.00
861 5 0.00
862 71 0.02
863 249 0.07
864 140 0.04
865 1 0.00
866 3 0.00
867 3 0.00
868 1 0.00
869 3 0.00
870 2 0.00
871 3 0.00
872 2 0.00
873 33 0.01
874 2 0.00
875 1 0.00
876 4 0.00
878 2 0.00
879 4 0.00
880 183 0.05
882 23 0.01
883 312 0.09
884 146 0.04
885 332 0.10
886 147 0.04
887 89 0.03
888 181 0.05
889 3 0.00
890 2 0.00
891 1 0.00
892 192 0.06
893 360 0.10
894 133 0.04
895 86 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (880 bp):
ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
ATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCACAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTAGCCGGCGTAGTGC
CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
TCGAACCGGACGAGGGTTGCGGCAGCAGGATCGACAGCATGCAGAGGGGGACCCGGCCAATCCCC
GGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCAGTTAAGATCGGAGATCGAGG
GTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCGAATTTTTCTTCATCGAGGCACCAT
TACCGAAGAACCTGACCGGCGGCATTGAGGTTCCG
Found at i:21039952 original size:26 final size:26
Alignment explanation
Indices: 21039922--21039974 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21039912 GATGACTTAG
*
21039922 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
21039948 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
21039974 G
1 G
21039975 ATCGAACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:21040851 original size:26 final size:26
Alignment explanation
Indices: 21040815--21040867 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21040805 GTTGACTTAG
21040815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21040841 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21040867 G
1 G
21040868 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21042420 original size:26 final size:26
Alignment explanation
Indices: 21042384--21042436 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21042374 GTTAACTTTG
21042384 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
21042410 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21042436 G
1 G
21042437 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21045067 original size:26 final size:26
Alignment explanation
Indices: 21045028--21045080 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21045018 GTTAACTTAG
*
21045028 GCATATGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
21045054 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
21045080 G
1 G
21045081 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:21045961 original size:26 final size:26
Alignment explanation
Indices: 21045931--21045983 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21045921 GTTGACTTAG
21045931 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
21045957 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21045983 G
1 G
21045984 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21046394 original size:893 final size:891
Alignment explanation
Indices: 21044154--21053813 Score: 11462
Period size: 893 Copynumber: 10.9 Consensus size: 891
21044144 GTTGACTTAG
* * * *
21044154 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCATGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
21044219 CTTGGGCATGTGTTGGTGCTACTTTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGC-GCATTTTTCTTCGCCGAGGCACCA---TC---GC--CG--G-AGA
* * * * *
21044284 ACCTGACCGGTGGCATTGGTGTTCCGACGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGAAGT
119 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGG-CCGGGGGGGTGTGCGCACATGATGT
* *
21044349 GCGATGGGTGGTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
21044414 CACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTGCCAATAGCCATTAAAG-GTCTAAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
21044478 TGGGGACACTTTTTTCAAATGGAT-ACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTT
312 TGGGGACACTTTTTTCAAATGG-TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
21044542 TATGCATGCCAAAAAAAATACAGGGAT-AAGTTTTACCAAGTTTAGGGCCAAAACTCCTTCTGAA
376 TGTGCATGCCAACAAAAATACAAGGATCACG-TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
21044606 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
440 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
21044671 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATG
505 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** * * *
21044736 GCAGTGGCACATAGAAATATGATGATGTGCCTAAAGCCACCTACCACCCTATCAATCCACGGCTT
570 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
21044801 GCGCATCCCGTCTCTCTGGCTGGTGAAGT----GCCCACCCGCCCACCCACTCGTTTCGTCGGTT
635 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * *
21044862 GGCTTAGGCATACGGAGTTCAATCCCAGTCTAAGATTGGACTAGACCGAGGGTTGCGGTAGCAGG
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGG
* * * ** * *
21044927 ATCGGCAGCATGAAAAGGGGGACCCGACCAATCCCCATCTTACAG-ATCCAGCCCCTCTGGCCGG
765 ATCGGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGC-GCATCCCGCCCCTCTGGCCGG
* * * * * *
21044991 CTGAGTGCCCGTACGCTCCTTTTATGGGTTAACTTAGGCATATGGAATTCATTCCCAGTCTAA
829 CTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
21045054 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCCGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
21045119 TTCGGGCATGTGCTGGTGCTACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGC-GCATTTTTCTTCGCCGAGGCACCAT---C---G---C--CGGAGA
*
21045184 ACCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
119 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * * *
21045248 CGGTGGGTGCTAGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
21045313 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAACTGTCTGAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
21045378 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** ***
21045443 TGCATGCCAACAAAAATACAAGGATCACATCTAATAAGTTTGGGAAAAAAACTCCTTCCGAAAAA
378 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * ** *
21045508 ATTTTAAAAAATCTTGAACCGCAGAAACTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
443 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * * *
21045573 GCCATGAAACTTAACGTGAAGGCTTAAAGGACCATTGTATGAATTTAGAAGCCAGAAAAATTGCA
508 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
21045638 TTGGCACGCAAAAATGTGAAGATGTGCCGAAACCCACCCACCACCCTATCGATCCACGACTTGCG
573 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * ** *
21045703 CATCCCGTCTCTCTGGCCGCCATAGTGCCCGTCCGCCCGCCCGCATGCTCGTTTCGTCGGTTGAC
638 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * ** * *
21045768 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGACTAAGGGTTGCAGCAACAGGATC
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATC
** * * ** * *
21045833 AACAGCACGCAAAGGGGGACCCAATCGATCCCCGGCTTGTTCATCCAGCCCCTCTGGCCGGCTAA
768 GGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
21045898 GCACCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAA
833 GCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
21045957 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACGTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * *
21046022 CTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGAGCCACCATCGCCGGAGAACCTGACCGGT
66 CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGAACCTGACCGGC
* * * ** * *
21046087 GGCATTGGGGTTCTGGCAATCGCGGGGGTCGGGTAGGTGTGCACACATGATGTGCGATGGGTACT
130 GGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
21046152 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAGCAAACTTTGAGAACTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
21046217 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGTCATTAAAGTGTCT-AATATGGGGACACTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA-ATGGGGACACTT
* * *
21046281 TTTTCAAATGGTAACAAAATCTTGTATACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
21046346 AAAAAATACAAGGATAACGTCTACGAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTAAAAA
388 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* ** * *
21046411 ATCTCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCATTAAAC
453 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
21046476 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCACGCA
518 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
21046541 GAAATATGAAGATGTGCCTAAACCAACCAACCACCCTATCGATCCACAGCTTGCGCATCCCGTCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * * * *
21046606 CTCTGGCAGGCGTAGTGCCCACCCGCCCACCTGCCCACTCATTTTGTCGATTGCCTTAGGCATAC
648 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** * * *
21046671 GGAGTTCATTCCTAGTCTAAGATTGGACTGGACCGAGGGTCACGGTAGTAGGATCGACAGCACGC
713 GGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
* ** * * *** *
21046736 AGAGGGGGACCCGGTCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCAATTGAGC-ACCGTCA
778 AAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGT-A
* * * *
21046800 CGCTCATTTTATGAGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAA
842 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
21046850 G-AT--TG-G---ATT----G-----G-T----CC-G----AGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
21046889 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGCCAAGGCACCATCGTCGAAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGCCGAGGCACCA---TC---G---C--CGGAGA
* * * * * *
21046954 ACCTAACCGGCGGCATTGAGGTTCCGACGATCGGGGGGCCGGGGGGAGTGTCCGCACATGATTTA
119 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGG-GTGTGCGCACATGATGTG
* * *
21047019 CGATGGGTGCTGGTATTTGGCCCTTATAATGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
183 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
21047084 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
21047149 GGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAG-TTGTAGCTGAATTTTTTTG
313 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
21047213 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAAAA
378 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
21047278 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTATGAAAAATAAAAAACGAGTTGTCTC
443 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
21047343 ACCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCATAAAAATGGCT
508 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
21047408 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGCG
573 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** *
21047473 CATCCCATCTCTCTGG-C--C-TA-T--------G-TAG--TG--C-C-C----C--C---T--C
638 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
21047507 ----GCATACGGAGTTCATTCCCAGACTAAGATCAGACCGGACTGAGGGTTGCGACAGTAGGATC
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * * *
21047568 AGTAGCACGCAGAGAGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCCCTCTAGCCAGTTGA
768 GGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
21047633 GCGCACGGACGCTCGTTTCATGGATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
21047692 G-AT-C--A----A-----A-TC-----T--GA-CTG----AGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
21047731 CTCGTGCATGTGCTGCTGCCGTATTTTTCTTCACC-AGGGCACCATCGTCGGAGAACCTGACTGA
66 CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGCCGA-GGCACCATCGCCGGAGAACCTGACCGG
* * * * * * * * * *
21047795 CGGTATTGAGATGCCAGAGATCGGGGCTGCCGGGGGGGGTGTGCACATATGATGTGCGATGGGTT
129 CGGCATTGGGGTTCCGGCGATCGGGG-GGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* ** *
21047860 CTGGTACTTGGCCTTTATATTGAACCCCTATCCCTCATCAAACCTCGAGAACTCTCACCCCCTTA
192 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
21047925 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATGGGGACACT
257 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
21047990 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAA-TTTTTTGTGCACGCCA
322 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* ** **
21048054 ACAAAAATACAAGGATCACGTCTACCAACTTTGTCGCCAAAACTCCTTTAGAAAAAATTTTAAAA
387 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
21048119 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCGCCATGAAA
452 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
21048184 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
517 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* *
21048249 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCAACCCGTC
582 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
21048314 TCTCTGGCTGGCATAGTGCCCACCCGTCTGCCTGCCCGCCCGCTCATTTCATCGGTTGGCTTAGG
647 TCTCTGGCCGGCGTAGTGCCCGCCCG-C--CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * *
21048379 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGATGATTGTGGCAGC-GGATCGGTAG
708 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * *
21048443 CACGCAAAGGGGGA-CCAACCGATCCCTGGCTTACACATCCCGCCCCTCTGGCCGGCTGAGC-CC
773 CACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * *
21048506 CGCATGCCCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
838 CGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * *
21048560 GCATATGGAGTTCATTCCTAGTCTAAGATCTGACCAGACGGAGTGTTGCGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * *
21048625 CTCGGGCATGTGCTGGTGCTCATTTTTCCTCGTCGGGGCACCATCACCGGAGAACCTGACCGGCG
66 CTCGGGCATGTGCTGGTGCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGAACCTGACCGGCG
* *
21048690 GCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTG
131 GCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* * * * *
21048755 GCACTTGGACCTTATATTGGCCCCCTATCTCTCATCAAACCTGGAGAACTCACACCCCCTTAAAA
195 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
21048820 AGCAATTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
260 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * *
21048885 TTCAAATGGTCAAAAAATCTTGTACACTGCGAGTTTTTAGCTGAAGTTTTTTGTCCACGCCAACA
325 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * **
21048950 AAAATACAAGGATCACGTCTTCCAGGTTTGGGGCCAGAACTACTTCCGAAAAAATTAAAAAAAAT
390 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * *
21049015 C-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATCTTGCCATGAAACA
455 CTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
21049079 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
519 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
21049144 AAATATGAAGATGTACCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
584 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
** * * * *
21049209 TCTTACCGGCGTAGT----GCCCACCCGCCCGCCCGCTTGTTCCGTCGATTGGCTTAGGCATACG
649 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * *
21049270 GAGTTCATTCCCAGT-TAAGATCGGACTGGACTGAGGGTTACGGCAGTAGGATCGGCAGCACGCA
714 GAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
* * * * *
21049334 GAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCGCCCGCACG
779 AAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACG
*
21049399 CTCGTTTCGTGGGTTG----A--C-T-----G---------AG-----
844 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
21049421 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTACAGTAGCACATGCTTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
21049486 CTC-GACAATGTGCTGGAGCTGCATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGTCGGAG
66 CTCGGGC-ATGTGCTGGTGC-GCATTTTTCTTCGCCGAGGCACCAT---C---G---C--CGGAG
* * * * *
21049550 AACCTGACCAGCGGCATTGAGGTTCCGGTGCTCGGGGGGCCGGGGGGGCTGTGCGCACATGTTGT
118 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGG-TGTGCGCACATGATGT
*
21049615 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
21049680 CACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
21049745 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
312 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
21049810 -TCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTACTTTCGAAAA
377 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** * *
21049874 AATTTAAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCT
442 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
21049939 TGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTTTGAATTTACAAGCCATAAAAATGGC
507 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
21050004 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTAC
572 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
21050069 GCATCCCGTCTCTCTGGCCGGCGTAGT----GCCCACCCGTCCGCCCGCTCGTTTCGTCGGTTGG
637 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
21050130 CTTAGGCATACGGAGTTCATTACCAGGCTAAGATCAGACTGGACCGATGGTTGTGGCAGCAGGAT
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGAT
* * * * *
21050195 CGGCAGCACGTAAAGGGGGACCAG-CCGATCCCAGGCTTGCGCATCCAGCCCCTCTAGCCGGCTG
767 CGGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* ** * *
21050259 AGCACCCGTACGCTCGTTTTGTGGGTTGA-TTAAGGCATACGGAGTTCAATCCTAGTCTAA
832 AGCGCCCGTACGCTCGTTTCATGGGTTGACTT-AGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
21050319 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGG-TGACACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAG-CACATGCTGG
* * *
21050383 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGAACCTGACCGG
65 GCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGAACCTGACCGG
* * *
21050448 CGACATTGGGGTTCCGGCGATCGGGGGTGTC-GGGGGG-GTGCGCACATGATGTGCGATGGTTGC
129 CGGCATTGGGGTTCCGGCGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
21050511 TGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAA
193 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
21050575 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
21050640 TTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTGTAGATGAATTTTTTTGTGCATGCCAA
323 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * * * *
21050705 AAAAAATACAAGGATCAGGTTTACAAATTTTGGGGCCAAAACTCCTTTCGAAATAATTTTAAAAA
388 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
** *
21050770 ATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATGAAAC
453 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
21050835 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACACA
518 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * *
21050900 GAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATTGATCTACGGCTTGCGCATCCCGTCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * * *
21050965 CTTTGGCCGGTGTAGT--------GCCCGTCCGCCCGCTTGTTTCATCGGTTGGCTTAGGTATAT
648 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* ** * * * *
21051022 GGAGTTCATTCCCAGTCTAAGATCGGACCGGACTAAGGGTTGTGGTAGTAGGATCGGTAGCACG-
713 GGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
** * * *
21051086 AAGAGGGGGACCCGACCGATCCCTAGCTTGCGCATCCCGCCCATCTGGCCGGCTGAGCGCCTGCA
778 AA-AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTA
21051151 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
21051201 GCATACGAAGTTCACTGCCAGTCTAAGATCGGATCGGACTGAA-GGTTGCGGCAGCACAGGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGAC-CAAGGGTTGCGGCAGCACATGCTGG
* *
21051265 GCTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGCCGAGGCACCATCGCCGGAG-A--A-C----
* *
21051330 AACTTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
121 --C-TGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
21051395 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC-CTGAGAACTC
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTC
* *
21051459 ACCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAA
246 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
21051524 ATAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTAAATTTTTG
311 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
21051589 TGTGCATGCCAAAAAAAAATACACA-GATCACGTCTAACAAGTTTGGGGCCAAAACGCCTTCCGA
376 TGTGCATGCC-AACAAAAATACA-AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* **
21051653 AAAAATTTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCATGAAAAAGAGAAATTGAGTC
439 AAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
21051717 GTGTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAA
503 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
21051782 TGGCATTAGCATGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGC
568 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
21051847 TTGCGCATCACGTCTCTCTGGCCGTCGTAGTGCCCGCCCGTCGGCCCGCCCGCTTGTTTCGTCGG
633 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * * * * * * *
21051912 TTGGCTTTGGCATACAGAGTTCATTCCCTGTTTAAGATTGGATTGGACCAAGGGTTGCGGCGGCA
698 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCA
* * * *
21051977 GGATCGGCAGCATGCAGAA-GGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCTCTCTGGCC
763 GGATCGGCAGCACGCA-AAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * * *
21052041 GAG-TGAGCACCCGCACACTCATTTCGTGGGTCGACTTAGGCATACGGAGTTCATTACCAGTCTA
827 G-GCTGAGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
21052105 A
891 A
** * * * *** * * *
21052106 GCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGACCATTACGGCAGCAAATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * *
21052171 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGCCGAGGCACCAT--------C---GCCGGAGA
* * * * *
21052236 TCCTAACCGGCGACATTGGGGTTCCGACTATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
119 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATGT
*
21052301 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
182 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
21052366 CACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAA
247 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
21052431 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
312 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * ** *
21052496 ATGCATGCCAACGAAAATACAAGGATCCCGTCTAACGGGTTTGGGGCTAAAACTCCTTCCGAAAA
377 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * ** *
21052561 AATATAAAAAAATCTTGAACCGTAAAACGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
442 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
21052626 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGC
507 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
21052691 ATT-GCATGCAGAATTATGAAGATGGGCCTAAACCTACCTACAACCCTATCGATCCACGGCTTGC
572 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * ** * *
21052755 GCAACCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTTGCCCGCCCGCTCATTTCGTCAGTTGG
637 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * ** ** ** *
21052820 CTTCGGCATACGGAGTTCATTCCCAGTATAAGATCACACCAGATTGAGGGTTGCAGCAGCAGGAT
702 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
21052885 TGGCAGCACACAGAGGGGGACTCGATCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
767 CGGCAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
** * ** *
21052950 AGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCACATAGAGTTCATTCCTAGTCTAA
832 AGCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
21053010 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAAGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
* * * * * **
21053075 CTCGGGCTTGTGCTGGTGTTGTATTTTTCTTCGTCGGGGCACCATCGTTGGAGAACCTGACCGGC
66 CTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGAACCTGACCGGC
* * * * *** *
21053140 GACACTCGGGTTCCGGTGATCGAGGGTATCGGGGGGGTGTGCGCACATGATGTGAGATGGGTGCT
130 GGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
21053205 GGTACTTGACACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAA
194 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
21053270 GAGCATTTCAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
259 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
21053335 TTTCAAATGGTCACAAAATCTTGTACACCGT-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
324 TTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
21053399 AAAAAATACAAGGATCACGTCAACCAAGTTTGGGGGCAAAACTCCTTCCGAAAAAATTTTAAAAA
388 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * ** *
21053464 ATCTTGAACCATAAAAAGTTTCAAAAATTGTGGAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
453 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
21053529 TTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGTA
518 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * *
21053594 GAAATGTGATGATATGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGCATCCCGTCT
583 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * *
21053659 CTCTGGCCGGTGTAGTGCCCGTCCGCCCGTCCGCCCGCTCGTTTGGTCGGTTGGCTTAGGCGTAC
648 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * * * *
21053724 GGAGTTCATTCCCAGTTTAAGATCAGA-TCAGATCGAGGGTTGTGACAGCAGTATCGACAGCACG
713 GGAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* *
21053788 TAGAGGGGGACCCGACCGATCCCCGG
777 CAAAGGGGGACCCGACCGATCCCCGG
21053814 TGTCATGAGC
Statistics
Matches: 7570, Mismatches: 969, Indels: 449
0.84 0.11 0.05
Matches are distributed among these distances:
831 33 0.00
832 439 0.06
833 15 0.00
835 1 0.00
836 3 0.00
837 1 0.00
839 2 0.00
840 1 0.00
841 3 0.00
842 217 0.03
843 2 0.00
845 1 0.00
846 1 0.00
848 1 0.00
850 1 0.00
851 1 0.00
852 1 0.00
854 1 0.00
855 1 0.00
856 1 0.00
857 1 0.00
858 1 0.00
859 1 0.00
860 3 0.00
861 68 0.01
862 21 0.00
864 1 0.00
865 2 0.00
866 2 0.00
867 60 0.01
868 50 0.01
869 41 0.01
870 23 0.00
871 49 0.01
872 394 0.05
873 288 0.04
874 1 0.00
875 1 0.00
876 4 0.00
877 279 0.04
878 207 0.03
879 3 0.00
880 3 0.00
881 102 0.01
882 185 0.02
883 6 0.00
884 179 0.02
885 377 0.05
886 46 0.01
887 65 0.01
888 3 0.00
889 6 0.00
890 3 0.00
891 1 0.00
892 632 0.08
893 1214 0.16
894 46 0.01
895 49 0.01
896 158 0.02
897 247 0.03
898 226 0.03
899 315 0.04
900 142 0.02
901 1 0.00
903 287 0.04
904 356 0.05
905 457 0.06
906 227 0.03
907 1 0.00
912 1 0.00
913 1 0.00
915 1 0.00
916 7 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCGCATTTTTCTTCGCCGAGGCACCATCGCCGGAGAACCTGACCGGCG
GCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAA
AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC
TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAAA
GGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCT
CGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:21048563 original size:26 final size:26
Alignment explanation
Indices: 21048534--21048586 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21048524 GTTGACTTAG
21048534 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
21048560 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
21048586 G
1 G
21048587 ATCTGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:21050322 original size:26 final size:26
Alignment explanation
Indices: 21050293--21050345 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21050283 GTTGATTAAG
*
21050293 GCATACGGAGTTCAATCCTAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
* *
21050319 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAGTCTAA
21050345 G
1 G
21050346 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAGTCTAA
Found at i:21051205 original size:26 final size:26
Alignment explanation
Indices: 21051175--21051227 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21051165 GTTGACTTAG
* *
21051175 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
*
21051201 GCATACGAAGTTCACTGCCAGTCTAA
1 GCATACGAAGTTCACTCCCAGTCTAA
21051227 G
1 G
21051228 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCACTCCCAGTCTAA
Found at i:21052515 original size:905 final size:899
Alignment explanation
Indices: 21047666--21053812 Score: 7681
Period size: 892 Copynumber: 6.9 Consensus size: 899
21047656 ATTGACTTAG
* * * * * * * *
21047666 GCATACGGAGTTCATTCCCAGTCTAAGATCAAATCTGACTGAGGGTTGCGGCAGCACATGCTAGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGGCAGCACATGCTGGG
* * * *
21047731 CTCGTGCATGTGCTGCTGCCGTATTTTTCTTCACCAGGGCACCAT--C---G---TCGGAGAACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCCGGAGCATTCGGAGAACC
* * ** * * * * * ** * *
21047788 TGACTGACGGTATTGAGATGCCAGAGATCGGGGCTGCCGGGGGGGGTGTGCACATATGATGTGCG
131 TGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCG
* * ** * *
21047853 ATGGGTTCTGGTACTTGGCCTTTATATTGAACCCCTATCCCTCATCAAACCTCGAGAACTCTCAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
*
21047918 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAGAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
21047983 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAA-TTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * ** **
21048047 CACGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGTCGCCAAAACTCCTTTAGAAAAAAT
390 CATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * ** * *
21048112 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTCGC
455 TTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
21048177 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
21048242 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * ** * * *
21048307 ACCCGTCTCTCTGGCTGGCATAGTGCCCACCCGTCTGCCTGCCCGCCCGCTCATTTCATCGGTTG
650 TCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCG--T--C-G-CCGCCCGCTCGTTTCGTCGGTTG
* * * * *
21048372 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGATGATTGTGGCAGC-GGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGA
* * * * * *
21048436 TCGGTAGCACGCA-AAGGGGGA-CCAACCGATCCCTGGCTTACACATCCCGCCCCTCTGGCCGGC
774 TCGGCAGCACGCAGAA-GGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * **
21048499 TGAGC-CCCGCATGCCCGTTTTATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
838 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * *
21048560 GCATATGGAGTTCATTCCTAGTCTAAGATCTGACCAGA-CGGAGTGTTGCGGCAGTACATGCTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAG-GTTACGGCAGCACATGCTGG
* * **
21048624 GCTCGGGCATGTGCTGGTG-CTCATTTTTCCTCGTCGGGGCACCAT--C--A-C---CGGAGAAC
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCCGGAGCATTCGGAGAAC
* ** * *
21048680 CTGACCGGCGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGTG
130 CTGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* * * *
21048745 ATGGGTGCTGGCACTTGGACCTTATATTGGCCCCCTATCTCTCATCAAACCTGGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* * *
21048810 CCCCTTAAAAAGCAATTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
21048875 GGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTGCGAGTTTTTAGCTGAAGTTTTTTGTC
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * ** * * *
21048940 CACGCCAACAAAAATACAAGGATCACGTCTTCCAGGTTTGGGGCCAGAACTACTTCCGAAAAAAT
390 CATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** ** * *
21049005 TAAAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCATCTTGC
455 TTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
21049070 CATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
21049135 GGCACGTAGAAATATGAAGATGTACCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
** * * * * *
21049200 TCCCGTCTCTCTTACCGGCGTAGTGCCCACCCG-C-CCGCCCGCTTGTTCCGTCGATTGGCTTAG
650 TCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** * *
21049263 GCATACGGAGTTCATTCCCAGT-TAAGATCGGACTGGACTGAGGGTTACGGCAGTAGGATCGGCA
715 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
21049327 GCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTAGTCGGCTGAGCGC
780 GCACGCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
21049392 CCGCACGCTCGTTTCGTGGGTTGAC-T--G---A--G-G-------C-A---T-A
845 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * **
21049426 -C----GGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-AAGGGTTACAGTAGCACATGCTTT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAA-GGTTACGGCAGCACATGCTGG
* * * *
21049485 GCTC-GACAATGTGCTGGAGCTGCATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGTCGGA
65 GCTCGGGC-ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC-CCGGAGCAT--TCGGA
* * * * *
21049549 GAACCTGACCAGCGGCATTGAGGTTCCGGTGCTC-GGGGGGCCGGGGGGGCTGTGCGCACATGTT
126 GAACCTGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGAT
* *
21049613 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
*
21049678 CACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
21049743 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
21049808 TT-TCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTACTTTCGAA
385 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAA
* * *
21049872 AAAATTTAAAAAAAT-CTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCG
450 AAAATTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
21049936 TCTTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTTTGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
21050001 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCT
579 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
21050066 TACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGT--CCGCCCGCTCGTTTCGTCGGTTG
644 TGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCGCCGCCCGCTCGTTTCGTCGGTTG
* * * * * *
21050129 GCTTAGGCATACGGAGTTCATTACCAGGCTAAGATCAGACTGGACCGATGGTTGTGGCAGCAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGA
* * * * * *
21050194 TCGGCAGCACGTA-AAGGGGGACCAG-CCGATCCCAGGCTTGCGCATCCAGCCCCTCTAGCCGGC
774 TCGGCAGCACGCAGAA-GGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
21050257 TGAGCACCCGTACGCTCGTTTTGTGGGTTGA-TTAAGGCATACGGAGTTCAATCCTAGTCTAA
838 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT-AGGCATACGGAGTTCATTCCTAGTCTAA
* * *
21050319 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGG-TGACACATGTTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGGCAG-CACATGCTGG
21050383 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT--C---G---TCGGAGAAC
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCCGGAGCATTCGGAGAAC
* * *
21050440 CTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGTGTC-GGGGGG-GTGCGCACATGATGTGCG
130 CTGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* **
21050503 ATGGTTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
*
21050567 CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
21050632 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTGTAGATGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
21050697 CATGCCAAAAAAAATACAAGGATCAGGT-TTACAAATTTTGGGGCCAAAACTCCTTTCGAAATAA
390 CATGCCAAAAAAAATACAAGGATCACGTCTAAC-AAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
21050761 TTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
454 TTTTAAAAAATCCT-GAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
21050825 GCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * *
21050890 TTGGCACACAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATTGATCTACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
21050955 CATCCCGTCTCTTTGGCCGGTGTAGT----GCCCGT--CCGCCCGCTTGTTTCATCGGTTGGCTT
648 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCGCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
21051014 AGGTATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTAAGGGTTGTGGTAGTAGGATCGG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGG
* * * * *
21051079 TAGCACGAAGAGGGGGACCCGACCGAT-CCCTAGCTTGCGCATCCCGCCCATCTGGCCGGCTGAG
778 CAGCACGCAGAAGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
21051143 CGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * * * * * *
21051201 GCATACGAAGTTCACTGCCAGTCTAAGATCGGATCGGACTGAAGGTTGCGGCAGCACAGGCTAGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGGCAGCACATGCTGGG
* **
21051266 CTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC-CCGGAGCAT--TCGGAGA
* * *
21051331 ACTTGACCGACGGCATTGGGGTTCCGGTGATC-GGGGGGCCGAGGGGGGTGTGCGCACATGATGT
128 ACCTGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
*
21051395 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
21051460 CCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
21051525 TAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTAAATTTTTGT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
21051590 GTGCATGCCAAAAAAAAATACACA-GATCACGTCTAACAAGTTTGGGGCCAAAACGCCTTCCGAA
387 GTGCATGCC-AAAAAAAATACA-AGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAA
** * * **
21051654 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAAGAGAAATTGAGTCGT
450 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
21051719 GTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
21051784 GCATTAGCATGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
21051849 GCGCATCACGTCTCTCTGGCC-GTCGTAGTGCCCGCCCGTCGGCCCGCCCGCTTGTTTCGTCGGT
645 GCGCATCCCGTCTCTCTGGCCGGT-GTAGTGCCCGCCCGTC-G-CCGCCCGCTCGTTTCGTCGGT
* * * * ** ** *
21051913 TGGCTTTGGCATACAGAGTTCATTCCCTGTTTAAGATTGGATTGGACCAAGGGTTGCGGCGGCAG
707 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAG
* * *
21051978 GATCGGCAGCATGCAGAAGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCTCTCTGGCCGA
772 GATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCG-
* * *
21052043 G-TGAGCACCCGCACACTCATTTCGTGGGTCGACTTAGGCATACGGAGTTCATTACC-AGTCTAA
836 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCTAGTCTAA
* * *** * *
21052106 GCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGACCATTACGGCAGCAAATACTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGGCAGCACATGCTGGG
*
21052171 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC-CCGGAGCATT--CGGAGA
* * *
21052236 TCCTAACCGGCGACATTGGGGTTCCGACT-ATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
128 ACCTGACCGGCGACATTGGGGTTCCG-GTGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
21052300 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
21052365 ACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
21052430 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * ** *
21052495 TATGCATGCCAACGAAAATACAAGGATCCCGTCTAACGGGTTTGGGGCTAAAACTCCTTCCGAAA
386 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
21052560 AAATATAAAAAAATCTTGAACCGTAAAACGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
21052625 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
21052690 CATT-GCATGCAGAATTATGAAGATGGGCCTAAACCTACCTACAACCCTATCGATCCACGGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
21052754 CGCAACCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTTGCCCGCCCGCTCATTTCGTCAGTTG
646 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCG-TCG-CCGCCCGCTCGTTTCGTCGGTTG
* * * * *** *
21052819 GCTTCGGCATACGGAGTTCATTCCCAGTATAAGATCACACCAGATTGAGGGTTGCAGCAGCAGGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGA
* * * * *
21052884 TTGGCAGCACACAGAGGGGGACTCGATCGATCCCCCG-CTTGCGCATCCCGCCCCTCTGGCCGGC
774 TCGGCAGCACGCAGAAGGGGACCCGACCGAT-CCCCGACTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * **
21052948 TGAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCACATAGAGTTCATTCCTAGTCTAA
838 TGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * *
21053010 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAAGGTTACGGTAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGGCAGCACATGCTGGG
* ** * **
21053075 CTCGGGCTTGTGCTGGTGTTGTATTTTTCTTCGTCGGGGCACCAT--C---G--TT-GGAGAACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCCGGAGCATTCGGAGAACC
* * * *** *
21053132 TGACCGGCGACACTCGGGTTCCGGTGATCGAGGGTATCGGGGGGGTGTGCGCACATGATGTGAGA
131 TGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
21053197 TGGGTGCTGGTACTTGACACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
* *
21053262 CCCTTAAAGAGCATTTCAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
21053327 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACCGT-GAGTTTTTAGCTGAATTTTTTTGTG
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
21053391 CATGCCAAAAAAAATACAAGGATCACGTC-AACCAAGTTTGGGGGCAAAACTCCTTCCGAAAAAA
390 CATGCCAAAAAAAATACAAGGATCACGTCTAA-CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** * *
21053455 TTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAAATTGTGGAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
21053520 CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTAGAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
21053585 TGGCACGTAGAAATGTGATGATATGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
21053650 ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTCCGCCCGTCCGCCCGCTCGTTTGGTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCG-TCG-CCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * * *
21053715 TAGGCGTACGGAGTTCATTCCCAGTTTAAGATCAGATCAGATCGAGGGTTGTGACAGCAGTATCG
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCG
* * *
21053780 ACAGCACGTAGAGGGGGACCCGACCGATCCCCG
777 GCAGCACGCAGAAGGGGACCCGACCGATCCCCG
21053813 GTGTCATGAG
Statistics
Matches: 4591, Mismatches: 551, Indels: 224
0.86 0.10 0.04
Matches are distributed among these distances:
860 2 0.00
861 58 0.01
862 22 0.00
865 2 0.00
866 1 0.00
867 2 0.00
868 1 0.00
870 1 0.00
871 3 0.00
872 393 0.09
873 280 0.06
875 1 0.00
878 2 0.00
879 1 0.00
880 1 0.00
881 103 0.02
882 174 0.04
883 3 0.00
884 181 0.04
885 370 0.08
886 42 0.01
887 62 0.01
888 9 0.00
889 1 0.00
891 2 0.00
892 591 0.13
893 591 0.13
894 74 0.02
895 48 0.01
896 160 0.03
897 241 0.05
898 93 0.02
899 3 0.00
901 7 0.00
903 4 0.00
904 350 0.08
905 480 0.10
906 232 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAAGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCCGGAGCATTCGGAGAACC
TGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGGCAG
CACGCAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:21053076 original size:904 final size:898
Alignment explanation
Indices: 21049421--21053811 Score: 5891
Period size: 905 Copynumber: 4.9 Consensus size: 898
21049411 GTTGACTGAG
* * **
21049421 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACC-AAGGGTTACAGTAGCACATGCTTT
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAA-GGTTACGGTAGCACATGCTGG
* * * *
21049485 GCTC-GACAATGTGCTGGAGCTGCATTTTTCTTCACCGAGGCACCATCACCGGAGCATCGTCGGA
65 GCTCGGGC-ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC-CCGGAGCAT--TCGGA
* * * * *
21049549 GAACCTGACCAGCGGCATTGAGGTTCCGGTGCTC-GGGGGGCCGGGGGGGCTGTGCGCACATGTT
126 GAACCTGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGAT
* *
21049613 GTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
*
21049678 CACACCCCCTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
21049743 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * *
21049808 TT-TCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTACTTTCGAA
385 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
21049872 AAAATTTAAAAAAATCTCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGT
450 AAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
21049937 CTTGCCATGAAACTTCACGTCAAGGCTTAAAGGACCATTGTTTGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
21050002 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
21050067 ACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGT-CCGCCCGCTCGTTTCGTCGGTTGGC
645 GCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTGCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
21050131 TTAGGCATACGGAGTTCATTACCAGGCTAAGATCAGACTGGACCGATGGTTGTGGCAGCAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * ** * *
21050196 GGCAGCACGTAAAGGGGGACCAG-CCGATCCCAGGCTTGCGCATCCAGCCCCTCTAGCCGGCTGA
775 GGCAGCACGCAGAGGGGGACCCGACCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
21050260 GCACCCGTACGCTCGTTTTGTGGGTTGA-TTAAGGCATACGGAGTTCAATCCTAGTCTAA
840 GCACCCGCACGCTCGTTTCGTGGGTTGACTT-AGGCATACGGAGTTCATTCCTAGTCTAA
* * *
21050319 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGT-GACACATGTTGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTACGGTAG-CACATGCTGG
21050383 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCAT--C---G---TCGGAGAAC
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCCGGAGCATTCGGAGAAC
* * *
21050440 CTGACCGGCGACATTGGGGTTCCGGCGATCGGGGGTGTC-GGGGGG-GTGCGCACATGATGTGCG
130 CTGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* **
21050503 ATGGTTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
*
21050567 CTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
21050632 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCTCGAGTTTGTAGATGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
21050697 CATGCCAAAAAAAATACAAGGATCAGGT-TTACAAATTTTGGGGCCAAAACTCCTTTCGAAATAA
390 CATGCCAAAAAAAATACAAGGATCACGTCTAAC-AAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
21050761 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
21050826 CTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * *
21050891 TGGCACACAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATTGATCTACGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
21050956 ATCCCGTCTCTTTGGCCGGTGTAGT----GCCCGT-CCGCCCGCTTGTTTCATCGGTTGGCTTAG
649 ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTGCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * * * *
21051016 GTATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTAAGGGTTGTGGTAGTAGGATCGGTA
714 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* ** * *
21051081 GCACGAAGAGGGGGACCCGACCGATCCCTAGCTTGCGCATCCCGCCCATCTGGCCGGCTGAGCGC
779 GCACGCAGAGGGGGACCCGACCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCAC
* * *
21051146 CTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * * * * * *
21051201 GCATACGAAGTTCACTGCCAGTCTAAGATCGGATCGGACTGAAGGTTGCGGCAGCACAGGCTAGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTACGGTAGCACATGCTGGG
* **
21051266 CTCGGGCATGTGCTGGTGACGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC-CCGGAGCAT--TCGGAGA
* * *
21051331 ACTTGACCGACGGCATTGGGGTTCCGGTGATC-GGGGGGCCGAGGGGGGTGTGCGCACATGATGT
128 ACCTGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGT
*
21051395 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCCTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
* *
21051460 CCCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
21051525 TAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTAAATTTTTGT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
21051590 GTGCATGCCAAAAAAAAATACACA-GATCACGTCTAACAAGTTTGGGGCCAAAACGCCTTCCGAA
387 GTGCATGCC-AAAAAAAATACA-AGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** * * **
21051654 AAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAAGAGAAATTGAGTCGT
450 AAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
21051719 GTTGCCATGAAACTTCACGTGATGGCTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
21051784 GCATTAGCATGCAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
21051849 GCGCATCACGTCTCTCTGGCC-GTCGTAGTGCCCGCCCGTCGGCCCGCCCGCTTGTTTCGTCGGT
645 GCGCATCCCGTCTCTCTGGCCGGT-GTAGTGCCCGCCCGT--G-CCGCCCGCTCGTTTCGTCGGT
* * * * ** ** * *
21051913 TGGCTTTGGCATACAGAGTTCATTCCCTGTTTAAGATTGGATTGGACCAAGGGTTGCGGCGGCAG
706 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAG
* * * *
21051978 GATCGGCAGCATGCAGAAGGGGACCCGGCCGAT-CCCCGACTTGCGCATCCCGCCTCTCTGGCCG
771 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCCG-CTTGCGCATCCCGCCCCTCTGGCCG
* * *
21052042 AG-TGAGCACCCGCACACTCATTTCGTGGGTCGACTTAGGCATACGGAGTTCATTACC-AGTCTA
835 -GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCTAGTCTA
21052105 A
898 A
* * * *** * * *
21052106 GCATATAGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGACCATTACGGCAGCAAATACTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTACGGTAGCACATGCTGGG
*
21052171 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACCGGAGCATTGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATC-CCGGAGCATT--CGGAGA
* * *
21052236 TCCTAACCGGCGACATTGGGGTTCCGACT-ATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
128 ACCTGACCGGCGACATTGGGGTTCCG-GTGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
21052300 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
* *
21052365 ACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
21052430 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * ** *
21052495 TATGCATGCCAACGAAAATACAAGGATCCCGTCTAACGGGTTTGGGGCTAAAACTCCTTCCGAAA
386 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
21052560 AAATATAAAAAAATCTTGAACCGTAAAACGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
21052625 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
21052690 CATT-GCATGCAGAATTATGAAGATGGGCCTAAACCTACCTACAACCCTATCGATCCACGGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
21052754 CGCAACCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCTTGCCCGCCCGCTCATTTCGTCAGTTG
646 CGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCG--TG-CCGCCCGCTCGTTTCGTCGGTTG
* * * * ** *
21052819 GCTTCGGCATACGGAGTTCATTCCCAGTATAAGATCACACCAGATTGAGGGTTGCAGCAGCAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
* * * *
21052884 TTGGCAGCACACAGAGGGGGACTCGATCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCT
773 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * **
21052949 GAGCGCCCGTACGCTCGTTTTGTGGGTTGACTTAGGCACATAGAGTTCATTCCTAGTCTAA
838 GAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* *
21053010 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCGGACCAAAGGTTACGGTAGCACATGCTGGG
1 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTACGGTAGCACATGCTGGG
* ** * **
21053075 CTCGGGCTTGTGCTGGTGTTGTATTTTTCTTCGTCGGGGCACCAT--C---G--TT-GGAGAACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCCGGAGCATTCGGAGAACC
* * * *** *
21053132 TGACCGGCGACACTCGGGTTCCGGTGATCGAGGGTATCGGGGGGGTGTGCGCACATGATGTGAGA
131 TGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
21053197 TGGGTGCTGGTACTTGACACTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
* *
21053262 CCCTTAAAGAGCATTTCAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
21053327 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACCGT-GAGTTTTTAGCTGAATTTTTTTGTG
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
21053391 CATGCCAAAAAAAATACAAGGATCACGTC-AACCAAGTTTGGGGGCAAAACTCCTTCCGAAAAAA
390 CATGCCAAAAAAAATACAAGGATCACGTCTAA-CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * *
21053455 TTTTAAAAAATCTTGAACCATAAAAAGTTTCAAAAATTGTGGAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
21053520 CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTAGAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
21053585 TGGCACGTAGAAATGTGATGATATGCCTAAACCCACCTACCACGCTATCGATCCACGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
21053650 ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTCCGCCCGT-CCGCCCGCTCGTTTGGTCGGTTGGC
649 ATCCCGTCTCTCTGGCCGGTGTAGTG--C--CCGCCCGTGCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * * *
21053714 TTAGGCGTACGGAGTTCATTCCCAGTTTAAGATCAGATCAGATCGAGGGTTGTGACAGCAGTATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* *
21053779 GACAGCACGTAGAGGGGGACCCGACCGATCCCC
775 GGCAGCACGCAGAGGGGGACCCGACCGATCCCC
21053812 GGTGTCATGA
Statistics
Matches: 3074, Mismatches: 361, Indels: 121
0.86 0.10 0.03
Matches are distributed among these distances:
881 101 0.03
882 177 0.06
883 3 0.00
884 155 0.05
885 304 0.10
887 40 0.01
888 7 0.00
891 2 0.00
892 394 0.13
893 254 0.08
894 6 0.00
895 50 0.02
896 160 0.05
897 249 0.08
898 97 0.03
899 3 0.00
901 7 0.00
903 4 0.00
904 353 0.11
905 479 0.16
906 229 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTACGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCCCGGAGCATTCGGAGAACC
TGACCGGCGACATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGTGCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
ACGCAGAGGGGGACCCGACCGATCCCCCGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:21062886 original size:26 final size:26
Alignment explanation
Indices: 21062849--21062901 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21062839 GGTTGACCAG
*
21062849 GCATACAAAGTTCATTTCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
*
21062875 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
21062901 G
1 G
21062902 ATCAGGATCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:21063890 original size:159 final size:157
Alignment explanation
Indices: 21063573--21063934 Score: 361
Period size: 159 Copynumber: 2.3 Consensus size: 157
21063563 CGCTCACTCA
* * * *
21063573 TTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCAACTGTAAGATTAAACAGGACCAAGGTTG
1 TTTCGTCG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAACAGAACCAAGGTTG
* * * * * * * **
21063638 CGGCAGCAAGATTGGTAGCACGTAGAGGGGGATGCGGTCGATCCCCTGCTTGCGCATCCCGCCCC
65 CAGCAGCAAGATAGGCAGCACGCAGAGGGGGATCCGGCCGATCACAGGCTTGCGCATCCCGCCCC
* *
21063703 TCTGGTCGATTGAGCGCCCGCACGCTCG
130 TCTGGCCGACTGAGCGCCCGCACGCTCG
** *
21063731 TTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCAAGGGTT
1 TTTCGTC-GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAACAGAACCAA-GGTT
* * * * *
21063796 -CTAGCAGCAGGATAGGCAGCATGCAGAGGGGGA-CCAGGCCGATCACAGGCTTGTGGATCCTGC
64 GC-AGCAGCAAGATAGGCAGCACGCAGAGGGGGATCC-GGCCGATCACAGGCTTGCGCATCCCGC
* *
21063859 CCCTCTGGCCTG-CTGAGTGCCCGCACTCTCG
127 CCCTCTGGCC-GACTGAGCGCCCGCACGCTCG
* * * * * *
21063890 TTTCATGGGTTGACTGAGGCATACGCAGTTCATTCCCGGTCTAAG
1 TTTCGT-CGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
21063935 CATACGGAGT
Statistics
Matches: 167, Mismatches: 31, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
158 53 0.32
159 113 0.68
160 1 0.01
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (157 bp):
TTTCGTCGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAAACAGAACCAAGGTTGC
AGCAGCAAGATAGGCAGCACGCAGAGGGGGATCCGGCCGATCACAGGCTTGCGCATCCCGCCCCT
CTGGCCGACTGAGCGCCCGCACGCTCG
Found at i:21063958 original size:26 final size:26
Alignment explanation
Indices: 21063908--21063960 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21063898 GTTGACTGAG
**
21063908 GCATACGCAGTTCATTCCCGGTCTAA
1 GCATACGCAGTTCATTCCCAATCTAA
*
21063934 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGCAGTTCATTCCCAATCTAA
21063960 G
1 G
21063961 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAATCTAA
Found at i:21065480 original size:898 final size:894
Alignment explanation
Indices: 21063727--21069273 Score: 6280
Period size: 898 Copynumber: 6.3 Consensus size: 894
21063717 CGCCCGCACG
* ** **
21063727 CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGAACCAAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAG
* * * * * * * * * * *
21063792 GGTTCTAGCAGCAGGATAGGCAGCATGCAGAGGGGGACCAGGCCGATCACAGGCTTGTGGATCCT
66 GGTTATAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * * * * *
21063857 GCCCCTCTGGCCTGCTGAGTGCCCGCACTCTCGTTTCATGGGTTGACTGAGGCATACGCAGTTCA
131 G-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* * * *
21063922 TTCCCGGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGATCAGA-CTGAGGGTTGCGGC
195 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTGCGGC
* * * * *
21063986 AGCACATGCTGGCCGCAAGCATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGTCGGA
259 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA-TTTTCTTCGTCGGGGCACCATCGCCGGA
* *
21064051 GCATCACCGGA-AACCTGACCAGC-GCATTGGGGTTCCGACGTTCGGGGGGGCCGGGGGGTGTGC
323 GCATCACCGGAGAACCTAACC-GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGC
* * * * **
21064114 GCACATTTTACATGTGCGAT-GGTACTGGTAGTTGGCCCTTATATTTTCCCCCTATCCCTCATCA
386 ACACA---T-GATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
21064178 AACCTCGAGAACTCACACCCCCTTCAAGAGCAATTTGAGATTTTACAGGTTTGCTGCTAGTAGCC
446 AACCTCGAGAACTCACACCCCCTTAAAGAGC-ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* * * *
21064243 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTCTACAGTTCAACTTT
510 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
21064308 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
575 TTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * *
21064373 AAACTCCTTCCGAACAAAA-TTTCAAAAATCCTGAACCGCATAAAGTTTCAAAAATCATGAAAAA
639 AAACTCCTTCCGAA-AAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* *
21064437 TAGAAAACAAGTCGTCTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
702 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
21064502 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
767 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * *
21064567 ATCGACCCACGGCTTGCGCGTCCTGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGGCCT
832 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC-G-CT
* * *
21064632 CTCGTTTCGT-TGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGAACTGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAG
* * * * *
21064696 GGTTATAGCAACAGGATCAATAGCACGCAGAGGGGGACCCGGCCGATCCTCGGCTTGCGCATCCC
66 GGTTATAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * *
21064761 GCCTCTTTGGCCGGCTGAGCGACCGCACGGTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
131 GCC-CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
** * * *
21064826 TTCCCAGTCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCAGA-CGA-GGTTACGGTT
195 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGG-C
* * * * *
21064889 AGCACATACTGGGCTCGGGCATGT-CTGGTGTCGTAATTTCTTCGTCGGGGCACCATCGCCGGAG
259 AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTCTTCGTCGGGGCACCATCGCCGGAG
* * *
21064953 CATCACCGGAGAGCCTAACCGCGGCATTGGGGGTT-CGGCAATCGGGGGGGCCGGGACGGGGTGT
324 CATCACCGGAGAACCTAACCGCGGCATT-GGGGTTCCGACGATC-GGGGGGCC-GG--GGGGTGT
* *
21065017 GGC-CCCATGATGT-GATGGGTGCTGGTACTTGGCCCTTATA-TGGCCACCTAT-CCTCATCAAA
384 -GCACACATGATGTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
21065078 CCTTGAGAACTCACACCCACTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCTAGTAGCCTT
448 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC-AGTAGCCAT
* * *
21065143 TAAAGTGTCTGGAATGGGGACACTTTGTTTCAAATGGTCAC-AAAGCTTGTACCACTTTGAGTTT
512 TAAAGTGTCTGAAATGGGGACACTTT-TTTCAAATGGTCACAAAATCTTGTA-CACTTCGAGTTT
* * *
21065207 TTAGCTGAATGTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACC-GGCCTTGGGTCC
575 TTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCC
* *
21065270 AAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGT-AAAAA
638 AAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATCGTGAAAAA
* * *
21065334 AATGAGAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
702 TA-GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* ** *
21065399 ACAAGCCATAAAAATGGCTTTGGCATGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCC
766 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
21065464 TATCGATCGACGGCTTGCGCATCCCGTCTCACTGGCCGGCGTAGTGCCCGCCCGCCCAG-CCGCT
831 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-GCCCGCT
* * * *
21065528 -T-GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCGAG
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAG
* * * * * * * * *
21065591 GGTTA-CGTTAGCGGGATCGGCAGCACACAGAAGGGGACCCGATCGATCCTCGACTTGCGCATCC
66 GGTTATAG-CAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCC
* * * * *
21065655 CGCGCCTCTGGCCGACTGAGTGCCCGCACGCTCGTCTCATGGGTTGACTTAGGCATATGGAGTTC
130 CGC-CCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * ** *
21065720 ACTCCCAGTCTAAGCATACGGAGTTCATTACCAGTCTAAGATTGGTCTGGA-CTGAGGGTTACGG
194 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATC-GAGGGTTGCGG
*
21065784 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA-TTTC-TC-T----------T-------
258 CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTCTTCGTCGGGGCACCATCGCCGGA
* *
21065829 ---TCACCGGAGAACCTAACCGGCGGCATTGGGGTTCCGGCGTTCGGGGGGGCCGGGGGGTGTGC
323 GCATCACCGGAGAACCTAACC-GCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGC
21065891 ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
386 ACACATGATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
*
21065956 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAA
450 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
21066021 AGTGTCTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGGTTTTAGC
515 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * *
21066086 TGAATTTTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGAGGCTAAAACT
580 TGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
* * * *
21066151 CCTTCCAAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAA
644 CCTTCCGAAAAAATTTTAAAAAATCC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
*
21066216 A-GAAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
708 ACG-AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* *
21066280 CATAAAAATGGCATTGGCACGCA-AAATTATGAAGATGTGCCTAAACCCACCTACCACCCTATCT
772 CATAAAAATGGCATTGGCACACAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * *
21066344 ATCCAGGGCTTGCGCATCCCGTCTCACTGGCC-AGCGTAATGCCCGCCCG-CC-CCTG--
836 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCGCT
* *
21066399 CTCGTTTCGTCGGTTTGGCTTAAGTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAA-TG
1 CTCGTTTCGTCGG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTG
* * * * * * *
21066463 AGGGTTGTAGCAGTAGGATCGGCAGCACGCATAGGGGG-CCTGACCGATCCCCGACTTGTGGCAT
64 AGGGTTATAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTG-CGCAT
* * *
21066527 CCCGCCCTTTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTT
128 CCCGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * * * *
21066592 CATTCCCAGTCTAAGCATGCGGAGTTCATCCCCCAATCTTAAGATCGGACCGGACCGAGGGTTGC
193 CATTCCCAGTCTAAGCATACGGAGTTCAT-TCCCAGTC-TAAGATCGGACCAGATCGAGGGTTGC
* * *
21066657 AGCAGCACATGCT-GGCTCCGAGCATGTGCTGGCGTCGCATTTTCTTTCG-CAGGGGCACCATCG
256 GGCAGCACATGCTGGGCT-CGAGCATGTGCTGGTGCCGCATTTTC-TTCGTC-GGGGCACCATCG
** * * * *
21066720 TTGGAGCATCGCCGGAGAACCTGACCGACAGCATTGGGGTTCCGACGATCGGGGTGCC-GGGGGT
318 CCGGAGCATCACCGGAGAACCTAACCG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGT
* *
21066784 GTGCACACAAGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAATTGGCCCCCTATCTCTCATC
382 GTGCACACATGATGT-CGATGGGTGCTGGTACTTGGCCCTTAT-ATTGGCCCCCTATCCCTCATC
*
21066849 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTTGCCAATAG
445 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC--TGCCAGTAG
21066914 CCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTTGTACACTTCGA
508 -CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC-TTGTACACTTCGA
* * *
21066979 GTTTTTAGCCTGAA-TTTTTGTGCGTGCCAACTAAAATACAAGGATCACATCTACCAAGTTTGGG
571 GTTTTTAG-CTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * *
21067043 GCCAAAACTTCTTCCGAAAAACTTTTAAAAAAATCCCGAACCGCAAAAGGTTTCAGAAATCATGA
635 GCCAAAACTCCTTCCGAAAAAATTTT-AAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGA
21067108 AAAATAGAAAACGAGTCGTCTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
698 AAAATAGAAAACGAGTCGTC-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
***
21067173 ATTTACAAGCCATAAAAATGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
762 ATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
21067238 ACCCTATCGATCCACTGCTAGTGCATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCGCTCGCCC
827 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC
21067303 GTCT
892 G-CT
* * **
21067307 GCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACCGGAA-TG
1 -CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTG
* ** * *
21067371 AGGGTTGCA-AG-AGTAGGATCGACAGCACATAGA-GGGG-CCTGACCAATCCCCGGCTTGCGCA
64 AGGGTT--ATAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
* *
21067432 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGAAG
127 TCCCG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
* * * *
21067497 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGATCGAGGGTGGC
191 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGC
* * * *
21067562 AGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCG-CAGGGGCACCATCGC
256 GGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA-TTTTCTTCGTC-GGGGCACCATCGC
* * * * * *
21067626 CGGAGCATCGCCGGAGAACCTGACCCACGGCATTGGGGTTCTGGCGAT--------TGGGGGGTG
319 CGGAGCATCACCGGAGAACCT-AACCGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTG
** * * *
21067683 TGCACACATGATGTGCGATGGGTGCTGGTACTTCACCCTTATGTTGG-CCCTTATCCCTCAGCAA
383 TGCACACATGATGT-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
21067747 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
447 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * * * *
21067812 TACAGTGTATGAAATGCGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCCGAGTTTCT
512 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* **
21067877 AGCTGAATTTTTTGTGCATGCTAGTAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
577 AGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * ** **
21067942 TTCCTTCTGAAAAAATTTTAAAAAATCCCAAACTGCAAAAAGTTTTGAAAATTATGAAAAATAGA
642 CTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGA
*
21068007 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGG
706 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* *
21068072 CCATAAAAATGGCATTGGGACACAGAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCG
771 CCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* ** * * *
21068137 ATCCACGGTTTATGCATCTCGTTTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTCCG--
836 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT
* * *
21068194 CTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGACCGGA-TCGA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACT-GA
** * **
21068258 GGGTTGCAGAAATAGGAAT-GACAGCACGCAGA-GGGG----GACC-A----------G-G----
65 GGGTTATAGCAGCAGG-ATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
* *
21068301 CCG---T-T------C--A-----C-CA--CTCATTTCTTGGGTTGACTTAGGCATACGGAGTTC
129 CCGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* *
21068346 ATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGATCCAGATTCGA-GGTTGCG
194 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCAGA-TCGAGGGTTGCG
** * * **
21068410 GCAGCACATGCAAGGCTCGAGCATGTGCTGGTGCCACATTTTC-TCATC-GGGCACCATCGCTTG
257 GCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTCTTCGTCGGGGCACCATCGCCGG
* * * * *
21068473 AGGCCGTCA---GAGAACCTTGACCGC-GCATT-GCG-TCCGACGATCGAGGGTCCGGGAGCGGT
322 A-G-CATCACCGGAGAACC-TAACCGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGG-G-GGT
* * * **
21068532 GTG-GCACAT-AT-T-G-TGACGTGCT-GTTCTT-G-CCTTATATTACCCCCCTATCCCTCATCA
382 GTGCACACATGATGTCGATG-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* * *
21068589 AA-CTCGA-AACTCACACCCCCGTAAAAAAAGGCATTTTAAAGATTTTACAGGTTTGCTGCCAGT
446 AACCTCGAGAACTCACACCCCC-T-TAAAGA-GCA-TTT-GAGATTTTACAGGTTTGCTGCCAGT
* * *
21068652 ATCCATAAAAGTGTCTGAAATGGGGACAC--TTTTCAAATGGTCACAAAATCTTGTAACACTTTG
506 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT-ACACTTCG
* *
21068715 AGTTTTTAGCTGAA--TTTTGTGCATGCCCAAAAAAAATTACAAAGAATCACGGTCTACCAAGTT
570 AGTTTTTAGCTGAATTTTTTGTGCATG-CCAACAAAAA-TAC-AAGGATCAC-GTCTACCAAGTT
* ** * * * *
21068778 TGGGGCC-AGACTCCTT-ATAAAAATTTTTAAAAATTCCGAAACCGTAAAAATTTTCAAAAATCG
631 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCG-AACCGCAAAAAGTTTCAAAAATCG
* * *
21068841 TGAAAAAGAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAATTGTAT
695 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
*
21068906 GACTTTACAAGCCCATAAAAATGGCATTGGCACACAGAAATATGAAGAGTGTGCCTAAACCCACC
760 GAATTTACAAG-CCATAAAAATGGCATTGGCACACAGAAATATGAAGA-TGTGCCTAAACCCACC
* * ** **
21068971 TACCACCCTATCGATCCACGGCTTGCGCATTCTCGTCTCTCTGGTCGGTGTAGTG-CCGCCAACC
823 TACCACCCTATCGATCCACGGCTTGCGCA-TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
*
21069035 CGCTCTC-CG
887 CGC-C-CGCT
* * **
21069044 CTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACC-AGACCAA
1 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACTGA
* * * *
21069108 GGGTTACCA-TAGCAGGATCGACAGCACGCAGA-AGGGACCCGACCGATCCCCGGCTTGTGCATC
65 GGGTTA-TAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATC
** * *
21069171 CCGCCCCTCTGGCCTACTGAGCGCCCGCACGCTTGTTTCGTGGCTTGACTTAGGCATACGGAGTT
129 CCG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTT
* * *
21069236 CATTCCTAGTCTAAGCATACGAAGTTCATTACCAGTCT
193 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
21069274 NNNNNNNNNN
Statistics
Matches: 4008, Mismatches: 445, Indels: 392
0.83 0.09 0.08
Matches are distributed among these distances:
840 7 0.00
841 15 0.00
842 19 0.00
843 41 0.01
844 59 0.01
845 137 0.03
846 182 0.05
847 112 0.03
848 33 0.01
849 10 0.00
850 86 0.02
851 2 0.00
854 5 0.00
855 1 0.00
856 1 0.00
862 1 0.00
863 1 0.00
865 1 0.00
866 1 0.00
867 3 0.00
870 3 0.00
871 3 0.00
872 18 0.00
873 107 0.03
874 195 0.05
875 374 0.09
876 74 0.02
878 2 0.00
881 1 0.00
882 1 0.00
883 5 0.00
884 1 0.00
885 5 0.00
886 78 0.02
887 2 0.00
888 1 0.00
889 3 0.00
890 160 0.04
891 120 0.03
892 85 0.02
893 46 0.01
894 16 0.00
895 199 0.05
896 98 0.02
897 106 0.03
898 455 0.11
899 95 0.02
900 28 0.01
901 158 0.04
902 108 0.03
903 190 0.05
904 204 0.05
905 132 0.03
906 28 0.01
907 108 0.03
908 68 0.02
909 14 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACTGAG
GGTTATAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
GCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTGCGGCAG
CACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTCTTCGTCGGGGCACCATCGCCGGAGCA
TCACCGGAGAACCTAACCGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCACACA
TGATGTCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
AAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCT
Found at i:21065743 original size:26 final size:26
Alignment explanation
Indices: 21065707--21065759 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21065697 GTTGACTTAG
* *
21065707 GCATATGGAGTTCACTCCCAGTCTAA
1 GCATACGGAGTTCACTACCAGTCTAA
*
21065733 GCATACGGAGTTCATTACCAGTCTAA
1 GCATACGGAGTTCACTACCAGTCTAA
21065759 G
1 G
21065760 ATTGGTCTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCACTACCAGTCTAA
Found at i:21067524 original size:26 final size:26
Alignment explanation
Indices: 21067487--21067539 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21067477 GTTGACTTAG
*
21067487 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
21067513 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
21067539 G
1 G
21067540 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:21068369 original size:26 final size:26
Alignment explanation
Indices: 21068333--21068385 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21068323 GTTGACTTAG
21068333 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21068359 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21068385 G
1 G
21068386 ATTGGATCCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21069261 original size:26 final size:26
Alignment explanation
Indices: 21069224--21069273 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
21069214 CTTGACTTAG
*
21069224 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACGAAGTTCATTACC-AGTCTAA
21069250 GCATACGAAGTTCATTACCAGTCT
1 GCATACGAAGTTCATTACCAGTCT
21069274 NNNNNNNNNN
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 20 0.91
27 2 0.09
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTACCAGTCTAA
Found at i:21072264 original size:863 final size:857
Alignment explanation
Indices: 21070371--21072603 Score: 3008
Period size: 863 Copynumber: 2.6 Consensus size: 857
21070361 CACATTTTAC
* *
21070371 ATGTGCGATGGGTACTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCGAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
21070436 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCT
66 CTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
21070501 GAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTT
130 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTT
21070566 TTTTGTGCATGCCAAAAAAAATACAA-GATCACGTCTACCAAGTTTGGGGCC-AAACTCCTT--A
195 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
* * **
21070627 AAAAATTTTAAAAATCCTGAACGC-AAAAGTTTCAAAAATCATGAAAAAGAAAACAAGTCAACTT
260 AAAAATTTTAAAAATCCTGAACGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAAAGTCGTCTT
21070691 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
325 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * *
21070756 TTGGCACACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGACCCACGGCTTGCG
390 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
21070821 CATCTCGTCTCTCTGGTC-GTGTAGTGCCCGCCCACCCGCCGTCCGCTCATTTCGTCGGTTGGCT
455 CATCCCGTCTCTCTGGCCGGTGTAGT----G------C-CCGTCCGCTCATTTCATCGGTTCGCT
* *
21070885 TAGGCATACGGAGTTCATTCCCGTCTAGATTAGACCAGACAAGGGTTGCGCAACAGGATCGACAG
509 TAGGCATACGGACTTCATTCCCGTCTAGATCAGACCAGACAAGGGTTGCGCAACAGGATCGACAG
* * *
21070950 CATGTAGAGGGGACCCGCCGATCCCGGCTTGTGCATCCCGCCTCTGGCCTGCTGAGCGCCGCACA
574 CACGTAGAGGGGACCCGCCGATCCCGGCTTGTGCATCCCCCCTCTGGCCTGCTGAGAGCCGCACA
* *
21071015 CTCGTTTCGTGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACAAAGTTCATTACC
639 CTCATTTCGTGGTTAACTTAGGCATACGGAGTTCATTCCAGTCT-A-CAT---AAG-TCATTA-C
* *
21071080 AGTCTAAGATAGACAGACCGAGGGTACGGTAGCACTTCCTGGGCTCGCATGTGCTGGTGTCACAT
697 AG----AGA-AGACAGACCGAGGGTACGGCAGCACTTCCTGGGCTCGCATGTGCTGGTGCCACAT
* * * *
21071145 TTTTCTTCGTCGGGGCACCATCGCCTGAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTC
757 TTTTCTTCATCGGGGCACAATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCATGAGGGTTC
* * *
21071210 CGGCGATTGGGGGTGCCGGAGGGGCGTGCACACATG
822 CGACAATTAGGGGTGCCGGAGGGGCGTGCACACATG
*
21071246 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTTATCAAGAACCTCGAG
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-A-AACCTCGAG
21071310 AACTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
64 AACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
*
21071375 CTGAAATGGGGACACTATTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAAT
128 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAAT
** ***
21071440 TTTTTTGTGCATGCCAATGAAAATACAAGGATCACGTCTACCAAGTTTTTAGCCAAAACTCCTTC
193 TTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* *
21071505 CAAAAAAATTTTAAAAATCTTGAACTGCAAAAAGTTTCAAAAATCTTGAAAAATAAAAAATGAGT
258 C-AAAAAATTTTAAAAATCCTGAAC-GCAAAAAGTTTCAAAAATCATGAAAAATAAAAAA--AGT
21071570 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAA
319 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
*
21071634 ATGGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAACCACCCTATCGATCCAT
384 AT-GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT-ACCACCCTATCGATCCAC
21071699 GGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCG-CCGCTCATTTCATCGGTTCGCTTAG
447 GGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTCCGCTCATTTCATCGGTTCGCTTAG
* * * ** * * * **
21071763 GCATGCGGACTTTATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGTGACAGCTGGATCGGTA
512 GCATACGGACTTCATTCCC-GTCT-AGATCAGACCAGA-CAAGGGTTGCG-CAACAGGATCGACA
* *
21071828 GCACGTAGAGGGGGACTCGGGCGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCC-GACTGAGAG
573 GCACGTAGA-GGGGAC-CCGCCGAT-CCCGGCTTGTGCATC-C-CCCCTCTGGCCTG-CTGAGAG
* *
21071892 CCCGCACGCTCATTTCGTGGGTTAACTTAGGCATACGGAGTTCATTACCA-T-T-C-T-A-TGA-
632 -CCGCACACTCATTTCGT-GGTTAACTTAGGCATACGGAGTTCATT-CCAGTCTACATAAGTCAT
* * * *
21071950 T-C-G-G-A-CCGGACCGAGGGTTGCGGCAGCACATT-CTGGGCTTGGGCATGTGCTGGTGCCAC
694 TACAGAGAAGACAGACCGAGGG-TACGGCAGCAC-TTCCTGGGC-T-CGCATGTGCTGGTGCCAC
* * *
21072009 ATTTTTCTTCATCGGGGCACAATCGCCGGAGCATCGCCGGAGAACTTGACCGGCGGCATCGA-GG
755 ATTTTTCTTCATCGGGGCACAATCGCCGGAGCATCACCGGAGAACCTGACCGACGGCAT-GAGGG
* *
21072073 TTCCGACAATTAGGGGTG-TGG-GGGG-GTGTCGCACATG
819 TTCCGACAATTAGGGGTGCCGGAGGGGCGTG-CACACATG
* *
21072110 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
1 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * * *
21072175 CTCACACCCTCTTAAAGAGCTTTTGAGATTTTACAGCTTTGCTGCCAGTAGCTATTAAAGTGTTT
66 CTCACACCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
21072240 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTG
130 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTT
* * * *
21072305 TTTTCTGCATGCCAACAAAAATACAAGGAACATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
195 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-
21072370 AAAAAATTTTAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCG
259 AAAAAATTTTAAAAATCCTGAA-CGCAAAAAGTTTCAAAAATCATGAAAAATA-AAAA-AAGTCG
*
21072435 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAAA
321 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAA
* *
21072500 TGGTATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGC
385 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
21072565 TTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGTCC
450 TTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTCC
21072604 ACCCGCCCGC
Statistics
Matches: 1223, Mismatches: 93, Indels: 95
0.87 0.07 0.07
Matches are distributed among these distances:
862 2 0.00
863 362 0.30
864 115 0.09
865 26 0.02
866 87 0.07
867 1 0.00
871 1 0.00
872 1 0.00
874 15 0.01
875 78 0.06
876 165 0.13
877 35 0.03
878 17 0.01
879 18 0.01
880 6 0.00
881 29 0.02
882 18 0.01
883 31 0.03
884 25 0.02
885 114 0.09
886 67 0.05
887 10 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (857 bp):
ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
CTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTCTTAGCTGAATTTT
TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAA
AAAATTTTAAAAATCCTGAACGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAAAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGGTGTAGTGCCCGTCCGCTCATTTCATCGGTTCGCTTAGGCATACGGA
CTTCATTCCCGTCTAGATCAGACCAGACAAGGGTTGCGCAACAGGATCGACAGCACGTAGAGGGG
ACCCGCCGATCCCGGCTTGTGCATCCCCCCTCTGGCCTGCTGAGAGCCGCACACTCATTTCGTGG
TTAACTTAGGCATACGGAGTTCATTCCAGTCTACATAAGTCATTACAGAGAAGACAGACCGAGGG
TACGGCAGCACTTCCTGGGCTCGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACAATCGC
CGGAGCATCACCGGAGAACCTGACCGACGGCATGAGGGTTCCGACAATTAGGGGTGCCGGAGGGG
CGTGCACACATG
Found at i:21073506 original size:553 final size:554
Alignment explanation
Indices: 21072457--21073559 Score: 1362
Period size: 553 Copynumber: 2.0 Consensus size: 554
21072447 ACTTCACGTG
* * * *
21072457 AAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAAATGGTATTGGCATGCAGAAATAT
1 AAGGCTTAAGGGACCATTGCATGAATGTACAACCCATAAAAAATGGCATTGGCACGCAGAAATAT
21072522 GAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGC
66 GAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGC
* * *
21072587 CGGCGTAGTGCCCGTCCACCCGCCCGCCCTCTCGTGTCGTTGGTTGGCTTAGGCATACGAAGTTC
131 CAGCGTAGTGCCCGTCCACCCGCCCGCCCGCTCGTGTCGTTAGTTGGCTTAGGCATACGAAGTTC
** * * * ** *
21072652 ATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGTGGCAGTAGGATTGGCAGCACGCAAAGGGG
196 ATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAGCAGGATCAGCAGCACACAAAGGGG
* * * * * **
21072717 GACCCTACGATCCCTGGCTTACGCATGCAACCCCTTTGGCCGACTGAGCGCCGCACGCTCGTTTT
261 GACCCGACGATCCCCGGCTTA-GCATCCAACCCCTCTGGCCGACTGAGCGCCGCACGCTCATTCC
* * ** *** * *
21072782 GTGGTTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATCGTATGGAGTTCATTCCTGGTCTA
325 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAAAGTCCATTCCTAGTCTA
* * * * *
21072847 AGATCAGACCGGACTGAGGGTTGCAGCAGCACATGCTAGGCTTGGGCATGTGTTGGTGCCGCATT
390 AGATCAGACAGGACCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATT
* *
21072912 TTTCTTCATCAGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT-T
455 TTTCTTCATCAGGGCACCATCACCCGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCT
*
21072976 CGACGAT-TGGGGGGCC-GGGGGTTGTGCGCACATT
520 -GACGATCTGGGGGGCCGGGGGGGTGTGCGCACATT
* *
21073010 AAGGCTTAAGGGACCATTGTATGAATGTACAACCCAT-AAAAATGGCATTGGCACGTAGAAATAT
1 AAGGCTTAAGGGACCATTGCATGAATGTACAACCCATAAAAAATGGCATTGGCACGCAGAAATAT
* * * *
21073074 GAAGATGTGCCTAAAGCCA-CTACCACCCTATCGATCGACGGCTTGCGCATCCCGTCTCTCTGGC
66 GAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGC
* ** * * * *
21073138 CAGCGTATTGGTCG-CCTTCCTGCCCGCCCGCTCGTTTCGTTAGTTGGCTTAGGCATACGGAGTT
131 CAGCGTAGTGCCCGTCC-ACCCGCCCGCCCGCTCGTGTCGTTAGTTGGCTTAGGCATACGAAGTT
* * * * *
21073202 CATTCCCCGTCTAAGATCAGATCGAAAT-GAGGGTTGCGGTAGCAGGATCAGTAGCACACAGAGG
195 CATTCCCAGTCTAAGATCAGACCG-AATCGAGGGTTGCGGCAGCAGGATCAGCAGCACACAAAGG
* * **
21073266 GGGAACCCGGCTGATCCCCGGCTT-GTCATCCAGCCCCTCTGGCCGGTTGAGCGCTCGCACGCTC
259 GGG-ACCCGAC-GATCCCCGGCTTAG-CATCCAACCCCTCTGGCCGACTGAGCGC-CGCACGCTC
*
21073330 ATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAAAGTCCATT-ATC
320 ATTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAAAGTCCATTCCT-
** * * * *
21073394 AGTCTAAGATTGGATAGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
384 AGTCTAAGATCAGACAGGACCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGC
** * * * * *
21073459 CACATTTTTCTTTGTCGGGGCACCATCGCCCGAGTATCG-CAGGAGAACTTGACCAGCGGTATTG
449 CACATTTTTCTTCATCAGGGCACCATCACCCGAGCATCGTC-GGAGAACCTGACCAGCGGCATTG
*
21073523 GGGTTCTGGCGATCTGGGGGGCCGGGGGGGTGTGCGC
513 GGGTTCTGACGATCTGGGGGGCCGGGGGGGTGTGCGC
21073560 TCATGATGTG
Statistics
Matches: 463, Mismatches: 76, Indels: 20
0.83 0.14 0.04
Matches are distributed among these distances:
550 2 0.00
551 146 0.32
552 73 0.16
553 220 0.48
554 10 0.02
555 12 0.03
ACGTcount: A:0.21, C:0.26, G:0.29, T:0.24
Consensus pattern (554 bp):
AAGGCTTAAGGGACCATTGCATGAATGTACAACCCATAAAAAATGGCATTGGCACGCAGAAATAT
GAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGC
CAGCGTAGTGCCCGTCCACCCGCCCGCCCGCTCGTGTCGTTAGTTGGCTTAGGCATACGAAGTTC
ATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCGGCAGCAGGATCAGCAGCACACAAAGGGG
GACCCGACGATCCCCGGCTTAGCATCCAACCCCTCTGGCCGACTGAGCGCCGCACGCTCATTCCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAAAGTCCATTCCTAGTCTAA
GATCAGACAGGACCGAGGGTTGCAGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTT
TTCTTCATCAGGGCACCATCACCCGAGCATCGTCGGAGAACCTGACCAGCGGCATTGGGGTTCTG
ACGATCTGGGGGGCCGGGGGGGTGTGCGCACATT
Found at i:21074278 original size:26 final size:26
Alignment explanation
Indices: 21074248--21074298 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21074238 TTTGACTTAG
21074248 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
21074274 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGAAGTTCATTCCCAGTCTA
21074299 GGCTTGGACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21075169 original size:26 final size:26
Alignment explanation
Indices: 21075140--21075191 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
21075130 GTTGACTTAG
* *
21075140 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
21075166 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
21075192 AATCAGACTG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:21076492 original size:904 final size:900
Alignment explanation
Indices: 21073010--21080679 Score: 8991
Period size: 904 Copynumber: 8.6 Consensus size: 900
21073000 TGCGCACATT
* *
21073010 AAGGCTTAAGGGACCATTGTATGAATGTACAACCCATAAAAATGGCATTGGCACGTAGAAATATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* *
21073075 AAGATGTGCCTAAAGCCA-CTACCACCCTATCGATCGACGGCTTGCGCATCCCGTCTCTCTGGCC
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* ** ** * *
21073139 AGCGTATTGGTCGCCTTCCTGCCCGCCCGCTCGTTTCGT-TAGTTGGCTTAGGCATACGGAGTTC
131 -GCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTC
* * * * * * **
21073203 ATTCCCCGTCTAAGATCAGATCGAAAT-GAGGGTTGCGGTAGCAGGATCAGTAGCACACAGAGGG
194 ATTCCCAGTCTAAGATCAGACCG-GATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGG
* * * * * *
21073267 GGAACCCGGCTGATCCCCGGCTTG-TCATCCAGCCCCTCTGGCCGGTTGAGCGCTCGCACGCTCA
258 GG-ACCCGTC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * ** * **
21073331 TTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCACACAAAGTCCATTATCAG
321 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* *
21073396 TCTAAGATTGGA-TAGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
386 TCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * * * * * *
21073460 ACATTTTTCTTTGTCGGGGCACCATCGCCCGAGTATCGCAGGAGAACTTGACCAGCGGTATTGGG
450 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCA-GAGAACCTGACCGGCGGCATTGGG
* * *
21073525 GTTCTGGCGATCTG-GGGGGCCGGGGGGGTGTGCGCTCATGATGTGCGATGGGTGCTGGTACTTG
514 GTTCCGGGGATC-GAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * * *
21073589 GCCCTTATATTGGCCCACTGTCCCACATCAAACCTCGAGAACTCACACCCCCTTAAAGGGCATTT
578 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTT
* * * *
21073654 GAGATTTTAGAGGTTTGCTGCCATTAGCCATTAAAGTGTCTGAAATAGGGACAC-TTTTTGAAAT
643 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
* *
21073718 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTCGTGCATGCCAAAAAAAATAC
708 GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAC
* * *
21073783 AAGGATCATGTCTACCAAGTTTGGGCCCAAAACTCTTTCTGAAAAAATTTTAAAAAATCCCGAAC
773 AAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAAC
* * * *
21073848 CGCAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTTG-CTTGCCAAGAAACTTAACGTG
837 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * * *
21073911 AATGCTTAAGGGACAATTGTACGAATTTAGAAGCCATAAAAATGGCACTGGCACGTAGAAATATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* *
21073976 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACAACCCGTCTCTCTGGCC
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
21074041 GGGGTAGTGCCCGCCCA-CCGCCCG-CCGCCTCGTTTTGTCGGTTAGCTTAGGCATACGGAG-TC
131 -GCGTAGTGCCCGCCCACCCGCCCGCCCG-CTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTC
* * * * *
21074103 ATTCCTAGTCTAAGAT-GGACCGGATCGA-GGTTGGGGCAGCAGGATTGGCAGCACGCAGAGGGG
194 ATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGG
* * * * **
21074166 GACCCGGTCGATCCCCAGCTTGCGCATCCCG-CCCTCGGGCCGACTGAGCGCCCACACTTTTCGT
259 GACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC-GCTCGT
* *
21074230 TTCATGGGTTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
322 TTCGTGGG-TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * * * * * *
21074295 TCTAGGCTTGGACTGGACCTAGGGTTGTGGCAGCACATGCTGGGCTCGGGCTTGTGCTGGTGTCA
386 TCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
** * * * * *
21074360 CATTTTTCTTCACCGGGGAACCATCGCCAGAGCATCGTCGGAGAACCTGATCGACGGCATTGGGG
451 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CAGAGAACCTGACCGGCGGCATTGGGG
*
21074425 TTCCGGGGATCGAGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
515 TTCCGGGGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
21074489 CCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACACACGCCCCCTT-AAGAGCATTTGA
580 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
21074553 GATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGG
645 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
21074617 TCACAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
710 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* ** * **
21074682 GGATCACGTCCACCAAGTTTGGGGCCAAAAAACCTTCCAAAAACATTTTAAAAAATCCCGAATTG
775 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAA-ATTTTAAAAAATCCCGAACCG
* * * * *
21074747 CAAAATGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATTAAACTTCACATG
839 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
21074809 AAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* *
21074874 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCCTGCGCATCCCGTCTCTTTGGCC
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * *
21074939 GACGTAGT----G-----CCGCCCGCCCGCTCATTTTGTCGGTTGGCTTGGGCATACGAAGTTCA
131 G-CGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
** * **
21074995 TTCCCAGTCTAAGATCAGACCGGA-CAGAGGGTTGTAGCAGCAGGATCGGCAACACACAGAGGGG
195 TTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGG
* * * * **
21075059 GACCCGGCCGATCCCCGGCTTGTGCATCTCTCCCCTCTGGCCGGCTGAAAGCCCGCACGCTCGTT
259 GACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * * *
21075124 TTGTTGGTTGACTTAGGCATACGGAGTTTATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTC
323 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * * *
21075189 TAAAATCAGACTGGACCGAGAGTTACGGTAGCACATGTTGGGCTC-GGCATGTGCTGGTGCCGTA
388 TAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* * *
21075253 TTTTTCTTCGTCGGGGCATCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTAGGGTT
453 TTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CAGAGAACCTGACCGGCGGCATTGGGGTT
** *
21075318 TAGGGGATCGAGGGAGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
517 CCGGGGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
21075382 TTATATTGGCCCCCTATCCCTCATTAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGA
582 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
21075447 TCTTACAGGTTTGCTGCCTA-TAGCCATTAAAGTGTCTTAAATGGGGACACTCTTTTT-AAATGG
647 TTTTACAGGTTTGCTGCC-AGTAGCCATTAAAGTGTCTGAAATGGGGACACT-TTTTTCAAATGG
* *
21075510 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAT
710 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
21075575 GGATCAAGTCTACCAAGTTTTGCGTCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCG
775 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAAAAAATCCCGAACCG
*
21075640 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCTTGAAACTTCACGTG
839 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * * * *
21075702 AAGGCTTAAGGGACCTTTTTATAAATTTACAAACCATAAAAATGGCATTGGCACATAGAAATATA
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* ** * * *
21075767 AAGGTGTGCCTAAACGAACCTACCACCCTATCGATCCACAGCTTACGCATCCCGTCTCTCTGGCT
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* ** * * *
21075832 GGGATAGTGCCCGCCCACCCATCCGTCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCA
131 GCG-TAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
* * * ** * * *
21075897 TTCCCAGTCTAGGATCGGATCAAATCGAGGGCTACGGCAGCAGGATCGGCAGCACATAGAGGGGG
195 TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGG
* ** *
21075962 ACCCAGTCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGAATGAGCGCCCGTACGCTCGTTT
260 ACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
** *
21076027 CGTGGGTTGACTTAGGCATACAAAGTTCATTCCCCGTCTAAGCATACGGAGTTCATTCCCAGTCT
324 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * * * *
21076092 AGGATTGGACTGGACCGAGGGTTGTGGCAGCGCATGCTGGGCTCGGGCTTTTGCTGGTGTCGCAT
389 AAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * *
21076157 TTTTCTTCGTCGGGGCACCATCGCCCGATCATCGTCAGAGAACCTGATCGGCGGCATTGGGGTTC
454 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCG-CAGAGAACCTGACCGGCGGCATTGGGGTTC
* *
21076222 CGGGGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTTCTTGGCCCT
518 CGGGGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
21076287 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
583 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
21076352 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTGTTTCAAATGGTCA
648 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * * *
21076417 CAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTATTGTGCGTGCCAACAAAAGTACAAGGA
713 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * *
21076482 TCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCTCGGACCGCAA
778 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCGAACCGCAA
* * * *
21076547 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGTCATGAAAATTCATGTG
842 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
21076606 AAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATGGGCATGTAGAAATATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
*
21076671 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCC
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * *
21076736 GGCGTAGTGCCCGCCCGCCTGCCCACCCGTTCGTTTCGTCGGTTCGCTTAGGCATACGGAGTTCA
131 -GCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
* * * * * * * * * *
21076801 TTCCTAGTCTAAGATCAGACCAGACCGATGGTTGCAGTAGTAGGATCGACAGCATGCAGAGGGGG
195 TTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGG
** * ** *
21076866 ATGCGACCGATCCCCGGCTTGCATATCCCGCCCCTCTGTCCGGCTGAGCGCCCGCACGCTCGTTT
260 ACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
21076931 CGTGGGTTGACTTAGGCATACGGACTTCATTCCCAATCTAAGCATACGGACTTCATTCCCAGTCT
324 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * ** * * * *
21076996 ATGATCAGACCAGACCGAGGGTTGCGACAGGAGATGCTGGGCTCGGGCATGAGCTGGTGCCGCAT
389 AAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * ** * *
21077061 TTTTCTTCATCGGGGCCCCATCGTCGGAGCATCGTTGAAGAACCTAACCGACGGCATT-GGG-T-
454 TTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCAG-AGAACCTGACCGGCGGCATTGGGGTTC
21077123 ------T---------C-----------CG--C-TGA--T-CG-TGGG-GCTGGTACTTGGCCCT
518 CGGGGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
21077154 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCCTAAAAAGCATTCGAGAT
583 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
21077219 TTTACAGGTTTGCTGCCAGTAGCCACTAAAGTATTTGAAATGGGGACACTTTTTTCAAATGGTGG
648 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT--
* * *
21077284 C-CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAT-TCAACAAAAATTCAG
711 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC-ATGCCAACAAAAATACAA
* * *
21077347 GGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCTGAAAAATTTTTAAAAAATCCTGAACCG
775 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCG
* * * *
21077412 CAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTTTTGCCATGAAACTTCACGTG
839 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
*
21077474 AAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* * * * *
21077539 AAGATGTGCCCAAACACACCTACCACCCTATCGATACACGGCTTG-TCATCCCGTCTTTCTGGCC
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
21077603 GGCATAGTGCCTG----CCCGCCCGCCCGCTCGTTTCGTC-AGTTGGCTTAGGCATACGGAGTTC
131 -GCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTC
* * * * * * **
21077663 ATTCCCAGTCTAAGATTAGATC-GAACTGAGGGTTACAGCAGCAGGATTGATAGCACGTAGAGGG
194 ATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGG
** * * * * * * * *
21077727 GGACCCAACCGATCCCCTGCTTGCGCATCCCACCCCCCTGGTCGACTGAGCACCCGCATGCTCAT
258 GGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
21077792 GTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGT-T-----T---GAG---ATT----G-
322 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
** * * *
21077840 ----GATC-GA----AGTGAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATTTGCTGGTGCCAG
387 CTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC-G
* *
21077896 -ATTTTTATTCGTCGAGGCACCAT---C---GC--CG--GAGAACCT-ACCAGGCGGCATTGGGG
451 CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCAGAGAACCTGACC-GGCGGCATTGGGG
* * * *
21077949 TTACGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACCTGGC
515 TTCCGGGGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
21078014 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
580 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
21078079 GATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGG
645 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * *
21078144 TTACAAAATCTTGTACACTTCGAATTTGTAGCTGAATTTTTTTTTTTTGCATACCAACAAAAATA
710 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA---TTTTTTTGTGCATGCCAACAAAAATA
* *
21078209 CTAGGATCACGTCTAACAAGTTTGGGGCCAAAACT-C--C-----------------T------C
772 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAAC
* * * * *
21078248 C-C---AA-----AAAAATCATGAAAAACAGAAAATGAGTCGTCTTGTCGTGAAACTTCACATG
837 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * * * *
21078303 AAGGCTTAAGGGAACATTGTATGGATTTATAAGCCATAAAAATGGCATTGGCATGCAGAAATGTG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* * *
21078368 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCATCTCTCTGGCT
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * *
21078433 GACGTAGTGCCCGCCCGCCCGCCTGCCCTCCCGCTCGTTTCATC-AGTTGGCTTAGGCATACAGA
131 G-CGTAGTGCCCG-CC-CAC-CC-GCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGA
* * * * * * *
21078497 GTTCATTCCTAGTCTAACATCGGACAGGATCGAGGGTTGTGGTAGCAGGATCGGCAACACGTAGA
190 GTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGA
* * * *
21078562 GGGGGACCCAGTCGATCCCCGGCTTGCACATCTCGCCCCTCTGGTCAGCTGAGCGCCCGCACGCT
255 GGGGGACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* **
21078627 CATTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGC-TACGGAGTTCATTCCC
319 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* * * * * * * *
21078691 AGTCTAAGATCAGACCGGACCAAAGGTTGTGGCAACACATGCTGGGCTCAGACATGTGCTGGTGC
384 AGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
* ** * *
21078756 AGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACTGGAGAACCTGACCGGCGGCATTGG
449 CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGC-AGAGAACCTGACCGGCGGCATTGG
* * * *
21078821 CGTTCCGACGG-TC-AGGGGGGCCAGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTACT
513 GGTTCCG-GGGATCGA-GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
* *
21078884 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCTTAAAGAGAAT
576 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
*
21078949 TTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
641 TTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAA
* * *
21079014 ATGGTCACAAAATCTTGTACACATT-GAGTATTTAGCTGAATTGTTTTGTACATGCCAACAAAAA
706 ATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* ** * *
21079078 TACAAGGATCACGTGTACCAAGTTTGGGGAAAAAACTCCTTCCGAAAAAATTTAAAAAAATCTCG
770 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATTTTAAAAAATCCCG
* * ** * * *
21079143 AATCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCATG
834 AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
21079208 TG
899 TG
* * ** * *
21079210 AAGGCTTAAGGGGCCATTGTTTGAATTTACAAGTGATAAAAATGGCATTGGCATGCAGAAATATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* * * * *
21079275 AATATGTGCCTAAACCCACCTTCCACCCTATCAATCCATGGCTTGCGCATCCCGTCTCTCTGGCT
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* ** *
21079340 GACGTAGTGCCCTCCCACCCGCCCGCCTACTCGTTTCGTC-AGTTGGCTTATGCATACGGAGTTC
131 G-CGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGA-TTGGCTTAGGCATACGGAGTTC
* * * * * * * *
21079404 ATTCCCAGTCTAAGATTAGACCGGACCAAGGGTTGTGCCAGCAAGATCGGCAGCACATAGTGGGG
194 ATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGG
* * * * *
21079469 GACCCGGTCGATCCCCGACTTGCACATTCCGCCCCTCTGGACGGCTGAGCGCCTGCACGCTCGTT
259 GACCC-GTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* * * * *
21079534 TTGTGGGTTGACTAAGGCATACGGAGTTTAGTCGCAGTCTAAGCATACGGAGTTCATTCCCAGTC
323 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * *
21079599 GAAGATCGGA-TCGGACCGAGGGTTGCGGCAGCACATGTTAGGCTGGGGCATGTGCTGGTGCCGC
388 TAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * * *
21079663 ATTTTTCTTCATCGGGGCGCCATTGTCGGAGCATCGCAGGAGAACCTGACCGGTGGCATTGGGGT
452 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCA-GAGAACCTGACCGGCGGCATTGGGGT
** * * *
21079728 TCCGACGATCGAGCGGGCCGGGGGGGTGTGCTCACTTGATGTGCGATGGGTGCTGGTACTTGGCC
516 TCCGGGGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
21079793 CTTATTTTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAACGAGCATTTGAG
581 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * * *
21079858 ATTTTATAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGACATGGGGAAACTTTTTTCAAATGGT
646 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
21079923 CACAAAATCCTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATAAAAG
711 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* * * *
21079988 GATCACGTCTACCAAGTTTGGGGCTAAAACTACTTCTGAAAAAATTTTAAAAAATCCCTAACCGT
776 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAAAAAATCCCGAACCGC
* *
21080053 AAAAAGTTTTAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
840 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * * *
21080114 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAACATGGCATTGGGACGCAAAAATATG
1 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
* * *
21080179 AAGATGTGCCTAAACCCACCTACCACCATATCGATTCACGGCTTGCGCAACCCGTCTCTCTGGCC
66 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* * * * * * * *
21080244 GATGTAGCGCCCGTCCGCCTGCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGTATA-GGAAGTTC
131 G-CGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGG-AGTTC
* * * * * **
21080308 ATTCCTAGTCTAAGATCGGATCGGATCGAGGGTTGCTGTAGCAGGATCAACAGCACGTAGAGGGG
194 ATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGG
* * * * * * *
21080373 GACCCGATCGATCCCCTGCTTGTGCATTCCGCCCCTCTGGTCGGCTAAGCACCTGC-CTGCTCGT
259 GACCCG-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC-GCTCGT
* * *
21080437 TTCATGGGTTGACTTAGGCATACGAAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGT
322 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * * *
21080502 CTAAGATCGGACCGGACCGAGGGTTTCGACAGCACATGCTAGGCTTGCGCATGTGCTGGTGCCAC
387 CTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
21080567 ATTTTTCTTCGTCAGGGCACCATCGTCAGAGCATCGCAGGAGAACCTGACCAGCGGCATTGGGGT
452 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCA-GAGAACCTGACCGGCGGCATTGGGGT
**** *
21080632 TCTAACGATCG-GAGGGGTCGGGGAGGGTGTGCGCACATGATGTGCGAT
516 TCCGGGGATCGAG-GGGGCCGGGG-GGGTGTGCGCACATGATGTGCGAT
21080680 CGGAGGGTGT
Statistics
Matches: 5769, Mismatches: 802, Indels: 392
0.83 0.12 0.06
Matches are distributed among these distances:
825 3 0.00
826 15 0.00
827 4 0.00
828 1 0.00
829 147 0.03
830 24 0.00
831 2 0.00
834 3 0.00
835 1 0.00
836 1 0.00
837 61 0.01
838 180 0.03
839 4 0.00
841 2 0.00
842 4 0.00
843 1 0.00
844 2 0.00
846 3 0.00
847 1 0.00
849 3 0.00
851 3 0.00
853 1 0.00
854 2 0.00
855 2 0.00
857 2 0.00
858 7 0.00
859 2 0.00
860 1 0.00
861 2 0.00
862 41 0.01
863 364 0.06
864 3 0.00
865 51 0.01
866 1 0.00
867 164 0.03
868 269 0.05
869 5 0.00
870 1 0.00
871 53 0.01
872 4 0.00
873 1 0.00
874 231 0.04
875 9 0.00
886 1 0.00
890 35 0.01
891 196 0.03
892 128 0.02
893 384 0.07
894 35 0.01
895 1 0.00
896 36 0.01
897 225 0.04
898 279 0.05
899 178 0.03
900 21 0.00
901 108 0.02
902 290 0.05
903 294 0.05
904 1678 0.29
905 27 0.00
906 2 0.00
907 170 0.03
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (900 bp):
AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATG
AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
GCGTAGTGCCCGCCCACCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGA
CCCGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCGTCGGGGCACCATCGCCGGAGCATCGCAGAGAACCTGACCGGCGGCATTGGGGTTCCGG
GGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
CGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
Found at i:21076982 original size:26 final size:26
Alignment explanation
Indices: 21076946--21076996 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21076936 GTTGACTTAG
21076946 GCATACGGACTTCATTCCCAATCTAA
1 GCATACGGACTTCATTCCCAATCTAA
*
21076972 GCATACGGACTTCATTCCCAGTCTA
1 GCATACGGACTTCATTCCCAATCTA
21076997 TGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.31, G:0.14, T:0.27
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAATCTAA
Found at i:21079597 original size:26 final size:27
Alignment explanation
Indices: 21079545--21079598 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 27
21079535 TGTGGGTTGA
* *
21079545 CTAAGGCATACGGAGTTTAGTCGCAGT
1 CTAAGGCATACGGAGTTCAGTCCCAGT
*
21079572 CTAA-GCATACGGAGTTCATTCCCAGT
1 CTAAGGCATACGGAGTTCAGTCCCAGT
21079598 C
1 C
21079599 GAAGATCGGA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 20 0.83
27 4 0.17
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (27 bp):
CTAAGGCATACGGAGTTCAGTCCCAGT
Found at i:21080484 original size:26 final size:26
Alignment explanation
Indices: 21080454--21080506 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21080444 GTTGACTTAG
*
21080454 GCATACGAAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
21080480 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21080506 G
1 G
21080507 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21081236 original size:26 final size:26
Alignment explanation
Indices: 21081198--21081250 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21081188 GTTAACCTAG
* *
21081198 GCATACGGGGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21081224 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21081250 G
1 G
21081251 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.23, C:0.25, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21083394 original size:869 final size:867
Alignment explanation
Indices: 21081224--21084494 Score: 4625
Period size: 863 Copynumber: 3.8 Consensus size: 867
21081214 CCCAGTCTAA
* **
21081224 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
21081289 GTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACGATCGTCGGAGCATCACCGGAGA
66 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
21081354 ACCTGACCGGCGGCATTGAGGTTCCGATGATCGGGGGGCCGGGGTGGGTGTGCGCTCATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGG-GGGTGTGCGCACATGATGTG
* * *
21081419 TGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATTAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
21081484 ACCACCTTAAAGAGCATTTGAGATTTTACAGGCTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAA
*
21081549 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
324 TGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** *
21081614 TGCATGCCAACAAAAATATGAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** *
21081679 ATTTAAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
21081744 GCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATATAAATTGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
21081809 TTGGCTCACAGAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCAATCCAC-AGCTTGC
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGA-CTTGC
* *
21081873 GCATCCCGTCTCTCTGGCCGACACAGTGCCCGCCCGCTCGCCCGCTCATTTCGTCTGTTGGCTTA
648 GCATCCCGTCTCTCTGGCCGACGCAGTGCCCG--C-C-CGCCCGCTCATTTCGTCCGTTGGCTTA
* * * * *
21081938 GGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCAGGATCGAC
709 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGGC
* * * * * * *
21082003 AGCACACAGAGGGGGACCCGGTCGATCCCCGACTTGTGCATCCCACTCTTTTGGCTGGCTGAGCG
774 AGCACGCAGAGGGGGACCC-GCCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCG
*
21082068 CCCGCACGCTCGTTTCGTGGGTTAACTTAG
838 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
21082098 GCATACGGAGTTCATTCCCAGTCTAAGAT-TGAGCCGGACCGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * **
21082162 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCA---TC---G---C--CGGAG
65 GCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
*
21082216 AACCTGACCGGCGGCATTGGGGTTCCGACGGTCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
21082281 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCGTCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
21082346 CACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
* *
21082411 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATGTTTTT
324 T-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
** * * *
21082476 GTGCATATCGACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCTGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * * * *
21082541 ACTTTTAAAAAATCTCGAATCGTAAAAAGTTACGAAAATCCTGAAAAATAGAAAACGAGTCCTCT
453 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
21082606 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
21082671 GTTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGACTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
* * *
21082736 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCA
648 GCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCTCATTTCGTCCGTTGGCTTAGGCA
* * * *
21082801 TACGGAGTTCATTCCCAGTCTAAGATTC-GACCAGATCAAGGGATGCAGTAGCAGGATCGGTAGC
713 TACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCAGC
* * * * *
21082865 ACGCAGAGGGGGACCCGACCGCTCCTCGGCTTACGCATCCCGCCCCTTTGGCCGGCTGAGCACCC
777 ACGCAGAGGGGGACCCG-CCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCC
*
21082930 GCACGCTCGTTTCGTGGGTCGACTTAG
841 GCACGCTCGTTTCGTGGGTTGACTTAG
* * * * * * * *
21082957 GCATACGAAGTTCATTCCTAGCCTAAGATCGGACCGGACCAATGGTTGCAGTAGCACATGCTGAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
21083022 CTTGGGCTTGTGCTGATGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTTGAAGA
66 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
21083087 ACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGAGGGCC-GGGGGGTGTACGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG-GGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
21083151 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGTACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
21083216 GCTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * * *
21083281 GGCGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGAGTTTTTAGCCGACTTTTTTTA
325 GG-GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
21083346 TGCATGCCAACAGAAATACAGGGATTACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
21083411 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAGAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
21083476 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATATAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * *
21083541 TTGGCATGTAGAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCG
* * * * *
21083606 CATCCCGTCTCTATGGCTGGCGCAGTGCCCACCCGCCCGCCCGTTCGTTTCGTCCGTTGGCTTAG
649 CATCCCGTCTCTCTGGCCGACGCAGTG----CCCGCCCGCCCGCTCATTTCGTCCGTTGGCTTAG
* * *
21083671 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGCCTAAGGGTTGCGGTAGCAGGATCGGC
710 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC-AAGGGTTGCGGTAGCAGGATCGGC
* * * *
21083735 AGCACGTAGAGGGGGACCCTGCCGATCCCCGACTTGCGCATCCCGTCCCTCTGGTCGGCTGAGCG
774 AGCACGCAGAGGGGGACCC-GCCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCG
* *
21083800 CACGCACGATCGTTTCGTGGGTTGACTTAG
838 CCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * *
21083830 GCATATGGAGTTCATTCCAAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
21083895 CTCGAGCATGTGCTGCTACAGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-TCCGGAG
66 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGT-CGGAG
*
21083959 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGTGCCGGGGGGGTTGTGGGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGG-TGTGCGCACATGATG
* * * *
21084024 TGTGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAGCTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * * * *
21084089 ACACCCCCTCAAAGATCATTTGAGATTTTACAGGTTTGCTACCAGTACCCATTAAAGTGCCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
*
21084154 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTT
323 AT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
21084219 TTTTCATGCCAACAAAAATACAAGGATCACATC-ACCAAGTTTGGGGCCAAAACACCTTTCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
21084283 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATC
452 AAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
21084348 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTATAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
21084413 CATTGGCGCACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
21084478 CGCATCCCGTCTCTCTG
647 CGCATCCCGTCTCTCTG
21084495 TTGGCTTTGG
Statistics
Matches: 2128, Mismatches: 237, Indels: 64
0.88 0.10 0.03
Matches are distributed among these distances:
858 1 0.00
859 247 0.12
860 5 0.00
861 1 0.00
862 5 0.00
863 488 0.23
864 13 0.01
865 2 0.00
868 4 0.00
869 458 0.22
870 39 0.02
871 2 0.00
872 7 0.00
873 311 0.15
874 331 0.16
875 212 0.10
876 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (867 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
TCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCCCGCTCATTTCGTCCGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGGTAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGCCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAG
Found at i:21085945 original size:4 final size:4
Alignment explanation
Indices: 21085936--21085962 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
21085926 GAGTAGTGCA
21085936 CGCC CGCC CGCC CGCC CGCC CGCC CGC
1 CGCC CGCC CGCC CGCC CGCC CGCC CGC
21085963 TCGTTTCGTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.00, C:0.74, G:0.26, T:0.00
Consensus pattern (4 bp):
CGCC
Found at i:21086167 original size:26 final size:25
Alignment explanation
Indices: 21086130--21086181 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
21086120 GTTGACTTAG
21086130 GCATACAAGTTCATTCCCAGTCTAA
1 GCATACAAGTTCATTCCCAGTCTAA
21086155 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATAC-AAGTTCATTCCCAGTCTAA
21086181 G
1 G
21086182 ATCAAACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (25 bp):
GCATACAAGTTCATTCCCAGTCTAA
Found at i:21088417 original size:894 final size:891
Alignment explanation
Indices: 21087034--21094904 Score: 9578
Period size: 903 Copynumber: 8.9 Consensus size: 891
21087024 GTTGACTTAG
* * * *
21087034 GCATACGGAGTTCATTCCCAGTGTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * * *
21087099 CTCGAGCATGTGCTGGTGCTACTTTTTTCTTTGTCGGGGCACCATCACCGAAGCATCACCAGAGA
65 CTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * ** *
21087164 AGCTGACCAGCGGCATTGGGGTTCCGACGATTTGCAGGGCTGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * *
21087229 GATGGGTGCTGGTACTTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAAAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
21087294 CTCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCTGAAA
258 C-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAA
* * * *
21087358 TGAGGACATTTTTTTCAAATGGTCACTAAATCTTGTACACTTCGAGTTTCTAGCTAAATGTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AAT-TTTTT
* *
21087423 T-TGCCTGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGGAA
384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* * * * *
21087487 AAA-TTTAAAAAATCCCGAACCGAAAAAAGCTTT-GAAAATCATGAAAAATAGAAAACGATTCAT
449 AAATTTTAAAAAATCCCAAACCGTAAAAAG-TTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
21087550 CCTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATG
513 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
21087615 GCATTGGCATGCTGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTT
578 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
21087680 GCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCACCCGCACGCTCGTTTCGTCGGTTGGCTTGGG
643 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * * *
21087745 CATACGGAGTTCATTCCCAGTCTATGATTGGATCAGATTGAAGGTTGTGATAGCAGGATCGATAG
708 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGTGATAGCAGGATCGACAG
* **
21087810 CACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGTTGGCTGAGCGCC
773 CACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
21087875 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
838 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** **
21087929 GCATACGGAGTTCATTCTCAGTGAAAGATCGAACCAGAAAGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACC-GACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
21087994 CTCAGGCATGTGCTAGTGCCACATTTTTCTTCG-CGGGGGCACCATCGTCGGAGCATCGCCGGAA
65 CTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
21088058 AACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACGTGATGTGC
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
21088123 GATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
21088188 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAATGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
21088253 GGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAACATTTTTTGT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA-TTTTTTTGT
* *
21088318 GCATGCCAACAAAAA-AGCAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTAAAAAA
387 GCATGCCAACAAAAATA-CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* *
21088382 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
451 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
21088447 GCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
21088512 TTTGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATCGATCAATGGCTTGCG
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
21088577 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCACGCTTGTTTCATCGGTTGGCTTAGGCAT
646 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
21088642 ATGGAGTTCATTCCCAGTCTAAGATCAGATCGGACTGAGGGTTG-CAGTAGCAGGATC-AGTAGC
711 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGTGA-TAGCAGGATCGA-CAGC
* * * * *
21088705 ACACAGAGGGGGATCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCTC
774 ACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
*
21088770 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
839 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
21088823 G-AT-C---G---A-----A--CT---A--G-A-C-A--GAGGATTGGGGCAGCACATGCTAGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
21088863 TCGGGCATCTGCTGGTGCCGTATTTTTCTTCGTCTGGGCACCATCGCTGAAGCATCGCCGGAGAA
66 TC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * *
21088928 CCTAACCGACGACATTGGGGTTTCGACGATCGGGGAGGCCGGAAGGGGGTGTGCGCACATGATGT
130 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCC-G--GGGGGTGTGCGCACATGATGT
* *
21088993 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
21089058 CACCCCCTTAAAGAGAATTTGAGATTTTACATGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
21089123 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTTTT
* * * *
21089188 GTGCATGCCAACAAAAATAAAAGGATCACCTCTACCATGTTTGGGGCCAAAAATCCTTCTGAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* *** * * *
21089253 AATGTTAAAAAATTTTGAAA-TGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
450 AATTTTAAAAAA-TCCCAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
21089317 TTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTGTGAATTTACAAGCCATAAAAATGG
514 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
21089382 CATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCATATCGATCCACGGCTTG
579 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ***
21089447 CGCATCTCGTCTCTCTGGCCAAAGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
644 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
*
21089512 ATACGAAGTTCATTCCCAGTCTAAGATCAGA-CAGGACTG-AGG--GT--T-----G-T-G---G
709 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACTGAAGGTTGTGATAGCAGGATCGACAG
* * * *
21089561 --CA-GGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGCC
773 CACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
21089623 CGCATGCTAGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
21089677 GCATATGGAGTTCGTTCCCAGTCTAAGGTC-AGACCGGACCGAGGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACC-GACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
21089741 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTTGTC-GGGCACCATCACCGGAGCATCGTCGGAG
64 GCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
*** * * *
21089805 AACCTGACCGATAGCA-TAGGGTTCC-AGCGATCGAGGAGGCCCCGAGGGG-GTGCGCACATGAT
128 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATCG-GG-GG-GCCGGGGGGTGTGCGCACATGAT
* *
21089867 GTGCGATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
189 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
21089932 CAAACCCCCTTAAAGAGCATTTGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
254 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
21089997 AATGGGGACACTTTTTTCAAAAGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
319 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTTT
* * * ** * *
21090062 TTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACTAAGTTTGGGATCAAAGCTCCTTC-CAA
383 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
*** * *
21090126 AAAATTTTCAAAAAAT-CCAAACTACAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCA
448 AAAATTTT-AAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCG
** *
21090190 TCTTGCTTTGAAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
512 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
21090255 GGCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCAAACGATCCATGGCT
577 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
21090320 TGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTAGCTTAG
642 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * ** ** *
21090385 GCATACAGAGTTCATTCCTAGTCTAAGATCAGACC-GAATTGAAGGCTGTGGCAATAGGATCTAC
707 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAAGGTTGTGATAGCAGGATCGAC
* ** * * ** * ** * *
21090449 AACATGTGGAGGGGGACCTGGCCGATTCCCGGCTAT-CGCATTTCGCCCCTCTGGCTGGCTGAGT
771 AGCACATAGAGGGGGACCCGATCGATCCCCGGCT-TGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
21090513 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAA
835 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
21090570 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGAGCCGCA-GGTTATGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGA-CCG-AGGGTTGCGGCAGCACATGCTGG
* *
21090634 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAG
64 GCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * *
21090699 AACCTGACCGGCGGCATTGAGGTTCCGACGATCGGGGGGTCAGGGGGTGTGCGCACATGATGTGC
128 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
** * *
21090764 GATGGGTAATGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
193 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
21090829 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
21090894 GGGACACTTTTTTGAAATGGCCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTTG
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AA-TTTTTTTG
* * *
21090959 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAAATCCTTCTGAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
** * * *
21091024 ATTTTAAAAAATCCCAAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTTTT
451 ATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
21091089 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCA
516 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * **
21091154 TTGGTATGCATAAATATGAAGATGAACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
21091219 CATCCCGTCTCTTTGGCCAGCGTGGTGCCCTCTCACCCGCCTGCCCGCTCGTTTCGTCGGTTGGC
646 CATCCCGTCTCTCTGGCCGGCGTAGTG--------CCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * *
21091284 TTAGGCATACGGAGTTCATTCCCAGT-TGAAGATCAGACCGGACTG-AGGATTG-CAGCAGCAGG
703 TTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCAGACTGAAGG-TTGTGA-TAGCAGG
* * * * * *
21091346 ATCGACAGCACACAGAGGGGTACTCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGGC
765 ATCGACAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
21091411 TGAACACCCGCACGCTCGTTTCGTGGGTCGACTTGGGCATACGGAGTTCATTCCCAGTTTAA
830 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
21091473 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGAACCTTA-GGTTGCGGCAGCAAATACTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCG-ACC-GAGGGTTGCGGCAGCACATGCTG
* * * * * *
21091536 GGCTCGAGCATGTGTTGGTGTCGCATTTTTCTTCGTCGGGGCACCAACGTCAGAGCATCACCGGA
63 GGCTCG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGA
** *
21091601 GAACCTGACCGGCGGCATTGGGG-TCCGGTGATCGTGGGGGCCGGGGTGGGGTGTGCACACATGA
127 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGGGGCC--GG-GGGGTGTGCGCACATGA
* * *
21091665 TGTCCAATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
188 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
21091730 TCACACCCCCTTAAAGAGC-TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
253 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
21091794 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTT
318 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATTTT
* * * * * *
21091859 TTTGTGCATGCCAAAAAAAAAACAAGGATCACATCTACCAAGTTTGGGGACAAAACTCTTTCCGA
382 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGA
** * * * *
21091924 AAAAATTTTAAAAAAT-CCAGAACAATAAAAAGTTTCAAAAATCGTGAATAATGGAAAATGAGTC
447 AAAAATTTTAAAAAATCCCA-AACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTC
* *
21091988 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGTCATAAAAA
511 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
21092053 TGGCATTGCCATGCA-AAAGTATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGG
576 TGGCATTGGCATGCAGAAA-TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
21092117 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGTCCGCCCGCCCGCTCATTTCTTCG
640 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG------C--CCGCCCGCCCGCTCGTTTCGTCG
* * * * * **
21092182 GTTGGCTTAGGCGTACGGAGTTGATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG-GGCAGC
697 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGTGATAGC
* * * * *** *
21092246 AGGATCGGCAGCATTC-T-GAGGGGGACTCG-GCTGATCCCCGACGCACGTATCCCGCCCCTCTG
762 AGGATCGACAGCA--CATAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * ** * *
21092308 GCCGGTTGAGCGCCTGCACGCTCGTTTTATGGGTTGACTTAGGCTTACGGAGTTCATTCCCTGTC
824 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
21092373 TAA
889 TAA
*
21092376 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACC-GACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
21092440 GCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGTCACTATCGTCGGAGCATCGCTGGAG
64 GCTC-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAG
* * * *
21092505 AACCTGACCGGCGACATTGGGGTTCC-ATTGATCGGGGGGGCCAGGGGTTGTGCGCACATGATGT
128 AACCTGACCGGCGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
21092569 GCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTTACCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
21092634 CACCCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 CA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
21092699 ATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTT
320 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTTTTTT
* * *
21092764 GTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAGCTCCTTCCGAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * * *
21092829 AATTTTAAAAAATCTCAAATCGTAAAAACTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTTT
450 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
21092894 TGCCATGAAACTTCACATGAACGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** * * * *
21092959 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTATCACCTTATCGATCCACGGTTTGT
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
21093024 GCATCTCGTCTCTCTGGCCGACGTTGTGCCGCCCGCCCGCCCGTCTGCTCGTTCCGTCGATTGGC
645 GCATCCCGTCTCTCTGGCCGGCGTAGT---GCCCGCCCG-CC--C-GCTCGTTTCGTCGGTTGGC
* ** * * *
21093089 TTAGGCATACGGGGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGT-AGTAGTAGGAT
703 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGTGA-TAGCAGGAT
* * * * * *
21093153 C-AGCAACACGTAGTGGGGGACCCGATCGATCCTCGGCTTGTGCATCCCGCCCCTCTGGCCAGCT
767 CGA-CAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * *
21093217 AAGCACCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
21093278 GCATACGGAGTTCATTCCCAATCTAAGATC-AGA-TGACC-AAGGTTGTGACAGCACATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
21093339 C-CGGCATGTG-TTGTGCTGCA-TTTT-TTCACCGAGG-A-C-T--TCGGAGCAACGCCGGA-AA
65 CTCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAA
* * * * ** **** * *
21093394 -CTAACCGG-TGCATT-AGGTTCTGGTGATCGGGGGGCCTTATGGTGTGAGCACATGATGTGTGA
130 CCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
21093456 TGGGTGC-GGTACTT-G-ACTTATATT----CCCTATCCCTC-TCCAA-CTCGAGAA-T-ACACC
195 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * *
21093510 GCCGCGGT-CAG-G--TTTGAGATGTTACAGGTTTGCTGCCAGTAG--A-TAAAGTGTCCTGAAA
260 -CC-C-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAA
* * * *
21093568 TGGGGACAGCTTTGTTC---TGGTCACAAAATCTTGTAACACTTCGAGGTTTGTAGCTGAGTTTT
321 TGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGT-ACACTTCGA-GTTTTTAGCTAATTTTT
*
21093630 TTGTGCATGCCAA-AAAAATACAAGGATGACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTG-A
383 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAA
* * *
21093693 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACCAGTCGT
448 AAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
21093758 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCACAAAAATG
513 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
21093823 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATGCAC-ACTT
578 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
21093887 ACGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGTCCGCTCGCCTGCTTGTTTCATCGATT
643 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--C-C-CG-CT-C--GTTTCGTCGGTT
** * * * ** * ** *
21093952 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGTAATAGC
700 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGTGATAGCAGG
* * * * * * *
21094017 ATCGGCAGCACGTAGTGGGGGACACGATTGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGAC
765 ATCGACAGCACATAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
21094082 TGAGCACCCGCACGCTCGTTTTGTTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
830 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
21094144 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCAAATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
21094209 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCATCCCCGGAGCATCGCCGGAGA
65 C-TCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * *
21094274 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGGGGTGGTGTGTGCACATGTTGT
129 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGG-CCGGGG-GGTGTGCGCACATGATGT
* *
21094339 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCATATCCCTCATCAAACCTCGAGAACTCA
191 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
21094404 CACCCCCTTAAAGAGCATTCGAGATTTTACATGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAA
256 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
21094469 CGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTAGCTAAGTTTTTTT
321 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAA-TTTTTTT
* * * *
21094534 GTGCATGCCAAAAAAAATAGAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAA
385 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAA
* * *
21094599 AATTTCAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
450 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
21094664 TGCCTTGAAACTTCACGTGAAGGCTTAAAGGACCATTTTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
21094729 ATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATACAAGGCTTGC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
21094794 GCATCCCGTCTCTATGGCCGGC---G-G---GCCCGCCTGCTCGTTTCGTCGGTTGGCTTAGG-A
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * *
21094851 GTACAGAGTTCATTCCCAGTCTAAGAT-TGAACCAGATTG-AGGATTGTGATAGCA
710 -TACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAAGG-TTGTGATAGCA
21094905 CATGCTTGGC
Statistics
Matches: 6073, Mismatches: 698, Indels: 415
0.85 0.10 0.06
Matches are distributed among these distances:
854 105 0.02
855 4 0.00
857 1 0.00
859 1 0.00
861 1 0.00
862 10 0.00
863 6 0.00
864 2 0.00
865 27 0.00
866 398 0.07
867 64 0.01
868 152 0.03
869 32 0.01
870 33 0.01
871 5 0.00
872 533 0.09
873 19 0.00
874 18 0.00
875 273 0.04
876 277 0.05
877 6 0.00
878 17 0.00
879 40 0.01
880 77 0.01
881 4 0.00
882 14 0.00
883 39 0.01
884 21 0.00
885 11 0.00
886 10 0.00
887 28 0.00
888 21 0.00
889 6 0.00
890 64 0.01
892 20 0.00
893 509 0.08
894 662 0.11
895 356 0.06
896 22 0.00
897 12 0.00
898 15 0.00
899 45 0.01
900 13 0.00
901 165 0.03
902 460 0.08
903 722 0.12
904 529 0.09
905 131 0.02
906 93 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAAC
CTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTT
AAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
GTTCATTCCCAGTCTAAGATCAGACCAGACTGAAGGTTGTGATAGCAGGATCGACAGCACATAGA
GGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:21089681 original size:26 final size:26
Alignment explanation
Indices: 21089651--21089703 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21089641 GTTGACTTAG
21089651 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
21089677 GCATATGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21089703 G
1 G
21089704 GTCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21090582 original size:26 final size:26
Alignment explanation
Indices: 21090544--21090596 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21090534 GTTGACTTAG
*
21090544 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21090570 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21090596 G
1 G
21090597 ATCAAACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21091483 original size:26 final size:26
Alignment explanation
Indices: 21091447--21091499 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21091437 GTCGACTTGG
*
21091447 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21091473 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21091499 G
1 G
21091500 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21092389 original size:26 final size:26
Alignment explanation
Indices: 21092353--21092402 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
21092343 GACTTAGGCT
*
21092353 TACGGAGTTCATTCCCTGTCTAAGCA
1 TACGGAGTTCATTCCCAGTCTAAGCA
21092379 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
21092403 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCA
Found at i:21093281 original size:26 final size:26
Alignment explanation
Indices: 21093252--21093304 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21093242 GTTGACTTAG
*
21093252 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21093278 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21093304 G
1 G
21093305 ATCAGATGAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21094154 original size:26 final size:26
Alignment explanation
Indices: 21094118--21094170 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21094108 GTTGACTTAG
*
21094118 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21094144 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21094170 G
1 G
21094171 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21095764 original size:26 final size:26
Alignment explanation
Indices: 21095728--21095779 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21095718 TTGACTTAGT
* *
21095728 CATACGGAGTTCATTCTCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
21095754 CATACGAAGTTCATTCCCAGTCTAAG
1 CATACGAAGTTCATTCCCAGTCTAAG
21095780 ATCGGATCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAG
Found at i:21096653 original size:26 final size:26
Alignment explanation
Indices: 21096617--21096669 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21096607 GTTGACTTAG
* *
21096617 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
21096643 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
21096669 G
1 G
21096670 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:21096775 original size:895 final size:896
Alignment explanation
Indices: 21094857--21098275 Score: 4424
Period size: 895 Copynumber: 3.8 Consensus size: 896
21094847 AGGAGTACAG
* ** * ** *
21094857 AGTTCATTCCCAGTCTAAGATTGAACCAGATTGAGGATTGTGATAGCACATGCTTGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATTGGACCAGACAGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCA
* ** * * *
21094922 TCTGCTGGTGCCATATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCTGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACC
* * *
21094987 GATCGCATTGGGGATCCGACGATCAAGGGGGCCGAGGGGGTGTGCACACATGATGTGCGATGGGT
131 GATCGCATTGGGGATTCGATGATCGA-GGGGCCG-GGGGGTGTGCACACATGATGTGCGATGGGT
*
21095052 GTTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
194 GCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
21095117 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-TGGGACA
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGT-GGACA
* * * * * * *
21095181 CTTTTTTCAAATGGTCAAAAAATTTTGAACCCTTCGATTTTTTAGCTGAATTTTTTTATGCATGC
323 C-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGC
* * *
21095246 CAACAAAAATACAAGGATCATGTCTAACAAGTTTTGGGCCAAAACTCCTTCC-AAAAATATTTTA
387 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTA
* ** * * *
21095310 AAAAATCTCGAACCACAAAAAGTTTTGAAAATCTTGAAAAAAAGAAAATGAGTCGTCTTGCCATG
451 AAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
21095375 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCA
516 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
*
21095440 TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
581 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * ** **
21095505 GTCTCTCTGGCCGGCGTAGTGCCCGACCCCCCGCCCGCTCAATCGTTTCGTCAATTTTCTTAGAA
646 GTCTCTCTAGTCGGCGTAGTGCCCG----CCCGCCCGCTCACTCGTTTCGTCGATTGGCTTAGGC
* ** *** * * * *
21095570 ATACGGAGTTCATTCCCAGTCAAAGATTGGATTGGACCGAGTGTTGCGGTAGCAGGATCAGTAGC
707 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATGAGCAGC
* * * *
21095635 ACGCAGAGAGGG-TCCCGACCGATCCCCGATTTGCGGATCCCGCCCCTCTGGCCGGCTGAGCACC
772 ACGCAGAGGGGGAT-CCGACCGATCCCCGACTTGC-TATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
21095699 CGCACGCTCATTTCGTGGGTTGACTTAGTCATACGGAGTTCATT-CTCAGTCTAAGCATACGA
835 CGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCT-AGTCTAAGCATACGA
* * * *
21095761 AGTTCATTCCCAGTCTAAGATCGG---A-TCA-AGGGTTGTGGCAGCACATGCTGGGCTCGAGCA
1 AGTTCATTCCCAGTCTAAGATTGGACCAGACAGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCA
* * * * *
21095821 TGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACTATCTCCGGAGCATCGCTAGAGAACCTGATC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACC
* *
21095886 GA-CGACATTGGGG-TTCGATGATCGGAGGGGCCGGGGGGTGTGCACACATGATTTGCGAAGGGT
131 GATCG-CATTGGGGATTCGATGATC-GAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGT
* *
21095949 GCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
194 GCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
21096014 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACAC
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACAC
21096079 -TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCA
324 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCA
*
21096143 A-AAAAAGTACAAGGATCACGGCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
389 ACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
**
21096207 AAATCCCGAACTGCAAAAAGTTTCAAAAAT-AGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
453 AAATCCCGAACCACAAAAAGTTTCAAAAATCA-TGAAAAATAGAAAACGAGTCGTCTTGCCATGA
21096271 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
517 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
21096336 ATAGAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTATCGATCCACAGCTTGCGCATCCCG
582 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* *
21096401 TCTCTCT-GGCTGGCGTAGTGCCCGCCCGCCTGCT-AGCTCGTTTCGTCGATTGGCTTAGGCATA
647 TCTCTCTAGTC-GGCGTAGTGCCCGCCCGCCCGCTCA-CTCGTTTCGTCGATTGGCTTAGGCATA
* *
21096464 CGGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTACAGTAGCAGGATGAGCAGCAGG
710 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATGAGCAGCACG
* * * **
21096528 CAGAGGGGGATCCGACCTATCCCCGGCTTGCTCATCCCGCCCCTATGGCCAACTGAGCGCCCGCA
775 CAGAGGGGGATCCGACCGATCCCCGACTTGCT-ATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * * *
21096593 CGCTCGTTTCGTTGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACGG
839 CGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGA
* * *
21096651 AGTTCATTCCCAATCTAAGATTGGACCGGACAGAGGGTTGTGCCAGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATTGGACCAGACAGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCA
* * *
21096716 TGTGCTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCGCCGTG-GCATCACTGGAGAACCTGAC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG-GAGCATCGCTGGAGAACCTGAC
* * * * ** *
21096780 CG-GCGGTATTGGTG-TTCCGATGATCGGGGGGCCAAGGGGTGTGCACACATGATGTGTGATGGG
130 CGATC-GCATTGGGGATT-CGATGATCGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGG
* * ** ** *
21096843 TGCTAGTACTTGGCCCTTATATCAGCCCAGTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
193 TGCTGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
21096908 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACA
* *
21096973 C-TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGCC
323 CTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCC
** * * *
21097037 AACAAAAATACAAGGATCATTTCTACCATGCTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAA
388 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
21097102 AAATCTCGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCTTCTTGCCATGAA
453 AAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
21097167 ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
518 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
21097232 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCATGGCTTGTGCATCCCGT
583 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * *
21097297 CTCTCTAGTCGGCGTAGTGCCCGCCTGCCCGCTCA----TTTCATCGGTTGGCTTAGGCATACGG
648 CTCTCTAGTCGGCGTAGTGCCCGCCCGCCCGCTCACTCGTTTCGTCGATTGGCTTAGGCATACGG
** * * * *
21097358 AGTTCAGACCCAGTCTAAGATCAGACCAGA-TGAAGGGTTACGGTAGTAGGATCG-GCAGTACAC
713 AGTTCATTCCCAGTCTAAGATCAGACCAGACCG-AGGGTTACGGTAGCAGGAT-GAGCAGCACGC
* * * *
21097421 AGAGGGGGACCCGACCGATCCCTGACTTGCATATCTCGCCCCTCTGGCCGGCTGAGCGCCCGCAA
776 AGAGGGGGATCCGACCGATCCCCGACTTGC-TATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * *
21097486 GCTCATTTTGTGGGTTGACTTGGGCATACGGAGTTTATTCCTAGTCTAACCATACGA
840 GCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGA
* * ** *
21097543 AGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGGCTGCACATGCTAGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATTGGACCAGACAGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCA
* * * *
21097608 AGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGCCGGGGCATTGCTGGAGAACCTGACC
66 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACC
* ** *
21097673 GATCGCATTGGGGTTTC-A-G--CGA-----TTGGGGGTGTGCACACATGATGTGTGATGGGTGC
131 GATCGCATTGGGGATTCGATGATCGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGC
* *
21097729 TGGTACTTGGACCTTATATTGGCCCCCTATCCCTAATCAAACCTTGAGAACTCACACCCCCTTAA
196 TGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * *
21097794 AGAGCATTT-ATGATTTTACA-GTTTACTGCCAGTTGCCGTTAAAGTGTCTGAAATG-GGATAGC
261 AGAGCATTTGA-GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACA-C
21097856 TTTTTCAAATGGTCACAAAATCTTGTACACCAATTACTTTGGAGTTTTTAGCTGAA-ATTGTTTT
324 TTTTTCAAATGGTCACAAAATCTTGTACA-C--TT-C----GAGTTTTTAGCTGAATA-T-TTTT
* * *
21097920 GTTCATGGCCAAC-AAAATACAAGGATCGGACGTCTTACCAAGTTTGGGGCCAAAACCCCTTTCG
379 GTGCAT-GCCAACAAAAATACAAGGATC--ACGTC-TACCAAGTTTGGGGCCAAAACTCCTTCCG
* * *
21097984 AAAAAA-TTTAAAAAATCCCAAACCATAAAAAGTTTCACAAAATCATGAAACATAGAAAACGAG-
440 AAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCA-AAAATCATGAAAAATAGAAAACGAGT
*
21098047 C-TC-TGCCATGAAACTTCAACGTGAA--CTTAAGGGACCAATTGTTATGAATTTAAAAGCTCAT
504 CGTCTTGCCATGAAACTTC-ACGTGAAGGCTTAAGGGACC-ATTG-TATGAATTTACAAGC-CAT
* * *
21098108 AAAAA-GGCA-TGACACGTAGAAAGATGAAGATGTGCCTAAA-ACACCTACCTACCCTATCGATC
565 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC-ACCCTATCGATC
** * *
21098170 CACGGCTT-ATCATCCCGTCTCTCTAGTCGGCGTAGTTGCCGGCCTGCCCGCTCACATCGTTTCG
629 CACGGCTTGCGCATCCCGTCTCTCTAGTCGGCGTAG-TGCCCGCCCGCCCGCTCAC-TCGTTTCG
*
21098234 TC-AGTTGCCTTAGGCATACGGA-TTCATTCCCAGTCTAAGATC
692 TCGA-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
21098276 GGATTGGACT
Statistics
Matches: 2226, Mismatches: 228, Indels: 130
0.86 0.09 0.05
Matches are distributed among these distances:
881 4 0.00
882 34 0.02
883 135 0.06
884 1 0.00
886 2 0.00
887 1 0.00
888 2 0.00
890 168 0.08
891 136 0.06
892 375 0.17
893 37 0.02
894 48 0.02
895 932 0.42
896 42 0.02
897 176 0.08
898 18 0.01
899 92 0.04
901 1 0.00
904 22 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (896 bp):
AGTTCATTCCCAGTCTAAGATTGGACCAGACAGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCA
TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACC
GATCGCATTGGGGATTCGATGATCGAGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGC
TGGTACTTGGACCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGTGGACACTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAAC
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTAGTCGGCGTAGTGCCCGCCCGCCCGCTCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATGAGCAGCACGCAGAGG
GGGATCCGACCGATCCCCGACTTGCTATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCAT
TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGA
Found at i:21097546 original size:26 final size:26
Alignment explanation
Indices: 21097510--21097560 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21097500 TTGACTTGGG
* * *
21097510 CATACGGAGTTTATTCCTAGTCTAAC
1 CATACGAAGTTCATTCCCAGTCTAAC
21097536 CATACGAAGTTCATTCCCAGTCTAA
1 CATACGAAGTTCATTCCCAGTCTAA
21097561 GATCGGACCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.14, T:0.31
Consensus pattern (26 bp):
CATACGAAGTTCATTCCCAGTCTAAC
Found at i:21098892 original size:26 final size:26
Alignment explanation
Indices: 21098855--21098907 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21098845 GTTGACTTAG
21098855 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21098881 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
21098907 G
1 G
21098908 ATCGGGCCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21099801 original size:26 final size:26
Alignment explanation
Indices: 21099751--21099803 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21099741 GTTCACTTAG
*
21099751 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAATCTAA
21099777 GCATACGGAGTTCA-TTCCTAATCTAA
1 GCATACGGAGTTCATTTCC-AATCTAA
21099803 G
1 G
21099804 ATGGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAATCTAA
Found at i:21100993 original size:893 final size:886
Alignment explanation
Indices: 21098528--21101078 Score: 3163
Period size: 910 Copynumber: 2.8 Consensus size: 886
21098518 TTCTTCCCCC
* *
21098528 AGGGACCA-TGTAAATGAATGTTACAAGCCAT-AAAATGGCACTTGCACACG-A-AAAAATGAAG
1 AGGGACCATTGT--ATGAAT-TTACAAGCCATAAAAATGGCA-TTG-GCACGTAGAAATATGAAG
* *
21098589 ATGTGCC-AAACCCA-CTACCACCCTATCGATCTCATTGGCTTTCGCATACCCGTCTCTCTGG-C
61 ATGTGCCTAAACCCACCTACCACCCTATCGATC-CA-CGGCTTGCGCAT-CCCGTCTCTCTGGCC
* * * * *
21098651 GGCGTAGTGCCCGCCTGCCC-CT-G-TTCAATCGGTTTGCTTAGGCATACGAGTTCATTCCTAGT
123 GACGTATTGCCTGCCCGCCCGCTCGTTTC-ATCGGTTGGCTTAGGCATACGAGTTCATTCCTAGT
* * *
21098713 CTAGAGATCAGACCAGGCCAAGGTTGAGAGGTAGC-AGCATCGGCAGCACGCAGA--GGGACCCA
187 CTA-AGATCAGACCAGACCAAGGTT--GAGGCAGCAAG-ATCGACAGCACGCAGAGGGGGA-CC-
* * * * *
21098775 GGCCAGATCCCGCGGCTGGCCACAACCTGCCCCTCTGGCCT-GCTGAGCGCCCCGCACGCTCGTT
246 GG-CTGATCCC-CGGCTTG-CGCATCCT-CCCCTCTGG-CTGGCTGAGC-ACCCGCACGCTCGTT
* * * *
21098839 TCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTC
305 TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CTAGTC
* * * *
21098904 TAAGATCGGGCCGGACCGAGGGTTGCAGCAGCATATGCTGGGCTCGGGCATGTGCTGGTGCCGTA
369 TAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
** *
21098969 TTTTTC-T--T-------CA-C-CGGAGCATCGTTGGAGAACCTGACCGGTGGCATTAGGGTTCC
434 TTTTTCTTCATCGGGCACCATCTCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTAGGGTTCT
* *
21099022 GGCGATCGGGGGGCCGGGGGGTGTGCGAACATGGTGTGCGATGGGTGCTGGTACTTGGCCCTTAT
499 GGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
21099087 ATTGTCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
564 ATTG-GCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
*
21099152 ACAGGTTTGCTACCAGTAG-CAGTTAAAGTGTCTGAAATGGGGTCACTTTTTTCAAATGGTCACA
628 ACAGGTTTGCTACCAGTAGCCA-TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
21099216 AAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATC
692 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * ** ** * * * *
21099281 ACATCTACCAAGTTTGGGGTGAAAATTCCTTCTGAAGAAATTTAAAAAAATCTCGAACCGTAAAA
757 ACATCTAACAAGTTTAGGGCCAAAACACCCTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAA
* * *
21099346 AGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
822 AGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
* * * *
21099411 AGGGAGCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGAACGTAGAAATATGAAGATGTT
1 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTG
* *
21099476 CCTAAACCCACCTACCACCCTATCGATCCAGGGCTTGCGCATCCCCTCTCTCTGGCCGACGTAGT
66 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-T
* * *
21099541 GCCCGCCCGTCCGCTCGCCCGCCCGCCCACTCGTTTCGTCAGTTGGCTTAGGCATACAGAGTTCA
130 ---------TGC-CT-GCCCGCCCG----CTCGTTTCATCGGTTGGCTTAGGCATAC-GAGTTCA
* ** * * * * *
21099606 TTCCGAGTCTAAGATTGGA-CGGAACCCAAGGTTGCA-ACAGTACA-ATTGATAGCACGCAGAGG
179 TTCCTAGTCTAAGATCAGACCAG-A-CCAAGGTTG-AGGCAGCA-AGATCGACAGCACGCAGAGG
* * * * * * * *
21099668 GGGACCCGATCAATCCCCGGCTTGCGTATCCCTTCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
240 GGGACCGGCT-GATCCCCGGCTTGCGCAT-CCTCCCCTCTGGCTGGCTGAGCACCCGCACGCTCG
* * *
21099733 TTTCATGGGTTCACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCTAA
303 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CTAG
* * *
21099798 TCTAAGATGGGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCA
367 TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
* * * * *
21099863 CATTTTTCTTCACCGAGGCACCATCGTTGGAGCATCACCGGAGAACCTGACCGGTTGCATTGGGG
432 CATTTTTCTTCATCG-GGCACCATC-TCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTAGGG
* ** *
21099928 TTCTAGCGATTTGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
495 TTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
21099993 TTATATTGGCCACCTATCCCTCGTCAAACCTC-AAGAACTCACACCCCCTTAAAGAGCATTTGAG
560 TTATATTGGCC-CCTATCCCTCATCAAACCTCGAA-AACTCACACCCCCTTAAAGAGCATTTGAG
* *
21100057 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTTTGAAATGGGGACAGTTTTTTCAAATGGT
623 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
21100122 GACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
688 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
** *
21100187 GATCATGTCTAAGAAGTTTAGGGCCAAAACACCCTCCGAAAAAAATTT-AAAAAATCCCGAACCG
753 GATCACATCTAACAAGTTTAGGGCCAAAACACCCTCCG-AAAAAATTTAAAAAAATCCCGAACCG
*
21100251 TAAAAAGTTTTAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
817 TAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAG
21100316 GCTTA
882 GCTTA
*
21100321 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTG
1 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTG
21100386 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATT
66 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATT
21100451 GCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
131 GCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATAC-GAGTTCATTCCTAGTCTAAGATC
* * * *
21100516 AGACCAGACCGAGGTTGTGGCAGCAAGATCGACAGCACGAAGAGGGGGACCTGGCTGATCCCCGA
195 AGACCAGACCAAGGTTGAGGCAGCAAGATCGACAGCACGCAGAGGGGGACC-GGCTGATCCCCGG
* *
21100581 CTTGCGCATCGTACCCCTCTGGCTGGCTGAGCACCCGCACACTCGTTTCATGGGTTGACTTAGGC
259 CTTGCGCATCCT-CCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGC
* * * * *
21100646 ATACGGAGTTCATTCCCAGTCTAAGCTTATGGTGTTCATTCTGAGTCCAAGATCGGATCGGACCG
323 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCT-AGTCTAAGATCGGACCGGACCG
* * *
21100711 AGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCA
387 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATC-GGGCA
* * *
21100776 CCATCATCGGAGCATCGCCGGAGAACCTGACTGGCGGCATT-GGGTTCTGGCGATGGGGGGGCCG
451 CCATC-TCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTAGGGTTCTGGCGATCGGGGGGCC-
* * * *
21100840 GGGGGGTGTGTGCACATGATGTGCGTTGGGTGCTGATACTTGGCCCTTATATTGGCCCCTTGTCC
514 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCC
* * * * *
21100905 CTCATCAAACCTCGAAAACTCACTCCCTCTTAAAGGGCATTTGAGATTTTACAGGTATGCTGCCA
578 CTCATCAAACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
*
21100970 GTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
643 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
21101035 GAG-TTTTAGCTGAATTTTTTTATGCATGCCAACCAAAATACAAG
708 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
21101079 CATCGTCGGA
Statistics
Matches: 1433, Mismatches: 170, Indels: 121
0.83 0.10 0.07
Matches are distributed among these distances:
880 3 0.00
881 26 0.02
882 46 0.03
883 16 0.01
884 20 0.01
892 66 0.05
893 419 0.29
894 62 0.04
895 2 0.00
896 136 0.09
897 18 0.01
898 18 0.01
899 28 0.02
900 29 0.02
901 33 0.02
907 2 0.00
908 1 0.00
909 4 0.00
910 494 0.34
911 10 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (886 bp):
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTATT
GCCTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAGTTCATTCCTAGTCTAAGATCA
GACCAGACCAAGGTTGAGGCAGCAAGATCGACAGCACGCAGAGGGGGACCGGCTGATCCCCGGCT
TGCGCATCCTCCCCTCTGGCTGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCTAGTCTAAGATCGGACCGGACCGAGGG
TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGCACCATC
TCGGAGCATCGCCGGAGAACCTGACCGGTGGCATTAGGGTTCTGGCGATCGGGGGGCCGGGGGGT
GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAA
ACCTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCAT
TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTAACAAGTTTAGGGCCAAA
ACACCCTCCGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAG
AAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTA
Found at i:21101310 original size:291 final size:291
Alignment explanation
Indices: 21100786--21101370 Score: 867
Period size: 291 Copynumber: 2.0 Consensus size: 291
21100776 CCATCATCGG
** * * * *
21100786 AGCATCGCCGGAGAACCTGACTGGCGGCATTGGGTTCTGGCGATGGGGGGGCCGGGGGGGTGTGT
1 AGCATCGCCGGAGAACCTGACCAGCCGCATTGGGTTCTGGCGATGGGGGGGCCGAGGGGGTATGC
* *
21100851 GCACATGATGTGCGTTGGGTGCTGATACTTGGCCCTTATATTGGCCCCTTGTCCCTCATCAAACC
66 GCACATGATGTGCGATGGGTGCTGATACTT-GCCCTTATATTGGCCCCTTATCCCTCATCAAACC
* * **
21100916 TCGAAAACTCACTCCCTCTTAAAGGGCATTTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAA
130 TCGAAAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAA
*
21100981 AGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGC
195 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
*
21101045 TGAATTTTTTTATGCATGCCAACCAAAATACA
260 TGAATTTTTTTATGCATGCCAACAAAAATACA
* *
21101077 AGCATCGTCGGAGAACCTGACCAGCCGCATTGGGGTT-TCGGTGATCGGGGGGGCC-AGGGGGTA
1 AGCATCGCCGGAGAACCTGACCAGCCGCATT-GGGTTCT-GGCGAT-GGGGGGGCCGAGGGGGTA
* * *
21101140 TGCGCACATGATGTGTGATGGGTGTTGGTACTAT-CCCTTATATTGG-CCCTCTATCCCTCATCA
63 TGCGCACATGATGTGCGATGGGTGCTGATACT-TGCCCTTATATTGGCCCCT-TATCCCTCATCA
*
21101203 AACCTC-AAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
126 AACCTCGAA-AACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTATGCTGCCAGTAGCC
*
21101267 GTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
190 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
21101332 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
255 TTAGCTGAATTTTTTTATGCATGCCAACAAAAATACA
21101369 AG
1 AG
21101371 GATCATGTCT
Statistics
Matches: 265, Mismatches: 22, Indels: 13
0.88 0.07 0.04
Matches are distributed among these distances:
290 6 0.02
291 167 0.63
292 82 0.31
293 10 0.04
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (291 bp):
AGCATCGCCGGAGAACCTGACCAGCCGCATTGGGTTCTGGCGATGGGGGGGCCGAGGGGGTATGC
GCACATGATGTGCGATGGGTGCTGATACTTGCCCTTATATTGGCCCCTTATCCCTCATCAAACCT
CGAAAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTATGCTGCCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTATGCATGCCAACAAAAATACA
Found at i:21101861 original size:26 final size:26
Alignment explanation
Indices: 21101832--21101885 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
21101822 GGTGACTTAG
*
21101832 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGGCTAA
*
21101858 GCATATGGAGTTCATTCCTAGGCTAA
1 GCATACGGAGTTCATTCCTAGGCTAA
21101884 GC
1 GC
21101886 TTGGACCGGA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.22, G:0.22, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGGCTAA
Found at i:21104289 original size:874 final size:872
Alignment explanation
Indices: 21101076--21105280 Score: 4772
Period size: 928 Copynumber: 4.7 Consensus size: 872
21101066 ACCAAAATAC
* * * * *
21101076 AAGCATCGTCGGAGAACCTGACCAGCCGCATTGGGGTTTCGGTGATCGGGGGGGCCAGGGGGTAT
1 AAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATCGGGGGGCCCGGGGGGTGT
* * *
21101141 GCGCACATGATGTGTGATGGGTGTTGGTACTAT--CCCTTATATTGGCCCTCTATCCCTCATCAA
66 GCGCACATGATGTGCGATGGGTGCT-GTACT-TGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
21101204 ACCTCAAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGT
129 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
21101269 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
194 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* *
21101334 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAA
259 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAA
* * * * * *
21101399 AATCC-TTCTGAAAAAATTTTAAAAAATCCCCAACCACAAATAGTTTTAAAAATCATAAAAAATA
324 ACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* *
21101463 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAA-GGACCATTGTATGAATTTAGA
388 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
** * *
21101527 AGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACCTTAT
453 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
21101592 CGATCCACGGCTTGCGCATCCCGTTTCTCTGGCTGGCGTAGTGCCCACCCGCCCGCCCGCTTGTT
518 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTT
* *
21101657 TCTTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-GAACCGAGGGTTG
583 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACCGAGGGTTG
* * * * * * * *
21101721 TGGCAGCAGGATCGGTAGCACGCAAAGGGGGACCCGACCGATCCTCTGGTTACGCATC-CTGCCC
647 CGGCAGCAGGATCGGCAGCAAGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCTC-GCCC
* * * * * *
21101785 CTTTGGTCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGGTGACTTAGGCATACGGAGTTCATTCC
711 CTCTGGCCTGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT----A---CA---C
* * * * *
21101850 TAGTCTAAGCATATGGAGTTCATTCCTAGGCTAAGCTTGGACCGGACCGAGGGTTG-CGACAGAA
766 -AGT-T---C------A-TTC---CC-AGTCTAAGATCGGACCGGACCAAGGGTTGCCG-CAGCA
* * * *
21101914 CATGCTGGGCTCAGCCATGTACTGGTGCCGCATTTTTCTT-ATTCAGGGCACCATTGCC-
814 CATGCTAGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCA-TCAGGGCACCATCGCCG
* * * * * *
21101972 AGAGTATCGTCGAAGAACCTGACCGGCGGCAATGGGGTTTCGGCGATTGGGGGGCCGGGGGGGAG
1 A-AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATCGGGGGGCC-CGGGGG-G
* * * *
21102037 TGTGTGCTCATGATGTGCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCTCTATCCCTCATC
63 TGTGCGCACATGATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* * * *
21102102 AAACCTCGAGAACTAAGACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCC
127 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
* *
21102167 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTT
192 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * * *
21102232 TTGGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCA
257 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCA
* * *
21102297 AAACTCCTTTC-ATAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCCAAAATCATGAAAAA
322 AAACTCCTTTCGA-AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA
* *
21102361 TAAAAAACGAGTCGTCTGGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
386 TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
* *** *
21102426 CAAGCCATAAAAATTGCATTGGCACATAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCT
451 CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * * * *
21102491 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTACTGCCTGTCCGCCCGCTCGCTCG
516 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCG
* * * * * *
21102556 TTTCGTCGGGTGGCTTAGGCATATGCAGTTCATTCCCAGTCTCAGATCGAACCAGACCAAGGGTT
581 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT
* * * * * * * *
21102621 ACGGCAGTAGGATCGGTAGCACGCAGAGGGAGACCCGATCGATCCCTAGCTTGCGCATCCCGCCC
646 GCGGCAGCAGGATCGGCAGCAAGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCTCGCCC
* * * *
21102686 CTCTGGCC-GATTAATCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTC
711 CTCTGGCCTGCTT-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACACAGTTCATTC
* ** * *
21102750 CCAGTCTAAGATCGGACCGGACCGAGGGTTGCAACAGCACACGCTGGGCTCAGGCATGTGCTGGT
775 CCAGTCTAAGATCGGACCGGACCAAGGGTTGCCGCAGCACATGCTAGGCTCAGGCATGTGCTGGT
* * * * *
21102815 GTCGCATTTTTTTTCGTCAGGGCACCACCGTCG
840 GCCGCATTTTTCTTCATCAGGGCACCATCGCCG
* * * *
21102848 GAGCATCGTCAGAGAACCTGACCGACGGCATGGGGGTTTCGGTGATCAGGGGGG-CCGGGGGGTG
1 AAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATC-GGGGGGCCCGGGGGGTG
* * * * *
21102912 TGCACTCATGATGTGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCTTATCCCTCACCAA
65 TGCGCACATGATGTGCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
21102977 ACCTCAAGAACTCACACCTCCTTAAAGAGCAGTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
129 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
21103042 TAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCATGTAAACTTCGAG-TTTT
194 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * * *
21103106 AGCTGAATTGTTTTGTGCATGCCAACAAAAATAAAAGGATCCCATCTAACAAGTTTGGGGCGAAA
259 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAA
* * * *
21103171 ACTCC-TTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCCTAAAAAATA
324 ACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* * * *
21103235 GAAAACAAGTCGTCTTGCCATGAAACTTGATGTGAAGGCTTAAGGGAACATTGTATGAATTTACA
388 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
21103300 AGCCATAAAAATGGCATTGG--TGCACAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCT
453 AGCCATAAAAATGGCATTGGCATG--CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
* * *
21103363 ATCGATCCATGGCTTGCGAATCCCG--TCTCTGGCTGGCATAGTGCCCGCCCGCCCGTCCGCCCG
516 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG--C--CCGCCCG
* * * *
21103426 CTCGTTTCGTCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAG
577 CTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAG
* * * *
21103491 GGTTGTGGTAGCAGGATCAGCAGCAAGCAGAGGGGGACCCGACTGATCCCCAGCTTGCGCATCTC
642 GGTTGCGGCAGCAGGATCGGCAGCAAGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCTC
* * * *
21103556 ACCCCTCTGGCCTGCTTAGTGCCTGCACCCTCGTTTCGTGGGTTGACTTAGGCATACACAGTTCA
707 GCCCCTCTGGCCTGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACACAGTTCA
*
21103621 TTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCCGCAGCACATGCTAGGCTCGGGCATGTGCT
772 TTCCCAGTCTAAGATCGGACCGGACCAAGGGTTGCCGCAGCACATGCTAGGCTCAGGCATGTGCT
* * *
21103686 GGTGCCGCATTTTTCTTCACCGGGGCACCATCACCG
837 GGTGCCGCATTTTTCTTCATCAGGGCACCATCGCCG
* * * *
21103722 AAGCATCGTCGGAGAACCTGACTGGCGGCATTAGAGTTTCGATGATCGAGGGGGCCCGGGGGGTG
1 AAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATCG-GGGGGCCCGGGGGGTG
* * **
21103787 TGCGCACATGATGTGCGATAGGTGCTGTAACTTAGCCCTTATATTGGCCCCCTATCTTTCA-CAA
65 TGCGCACATGATGTGCGATGGGTGCTGT-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-A
*
21103851 AACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
128 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* * *
21103916 TTAAAGTGTCTGAAATGGGGACGCTTTTTTCAAAGGGTCACAAAATCTTGTTCACTTCGAGTTTT
193 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * * * *
21103981 TAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCGCGTTTAAAAATTTTGGGGCCAA
258 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAA
* ** * * *
21104046 AAATCCTTTCGAAAAAATTTTAAAAAATCAAGAACCACAAAAAGTTTCTAAAATCGTGAAAAATA
323 AACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* *
21104111 GAAAACGAGTCGTTTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACA
388 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * *
21104176 AGCCATAAAAATGGCATTGGCATGCGGAAATATGAAGATGTGCCTAAACCCACCTCCCACTCTAT
453 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * * *
21104241 CGATCCCCGGCTTGTGCATCCCGTCTCTCTGGTTGGCGTAGTGCCCGCCCGCCCGCCTGCCCGTT
518 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG--C-CC-GCCCGCT
* * * *
21104306 CTTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTGAGATCGGACCAGACTGAGGG
579 CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGG
* * *
21104371 TTGCGGCAGTAGGATCGGCAGCTCA-CAGAGGGGGACCCGACCGATCCTCAGCTT-CGCATCTCG
644 TTGCGGCAGCAGGATCGGCAGC-AAGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCTCG
* * * * * **
21104434 CCCCTCTGG-CTGGTTGAGCGCCCGCACGCTTGTTCCATGGGTTGACTTAGCCATACGGAGTTCA
708 CCCCTCTGGCCTGCTT-AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACACAGTTCA
* * * *
21104498 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAATACGAAGTT-CATTCCCAGTCTAA
772 TTCCCAGTCTAAG-AT-C-G-G---A---CCGGACCAAG-----G--GTTGC---CGCAG-C---
* * ** * *
21104562 GATCGGATTGGACCGAGGGTTACAGCAGCACATGCTGG-GCTCGGGCATGTGCTGGTGCTGCAT-
813 -A-C--A-T-G--CTA-GGCT-CAG--GCATGTGCTGGTGC-C--GCAT-T--T--TTCTTCATC
**** ** * **
21104625 TTTTCTTCGTCGGGG
858 AGGGCACCATCGCCG
* * * * * * *
21104640 CACCATCGTCGGAGCATCGCCGAAGAACCTGACCGACAGCATTAGGGTTCCGGCGATCGGGGGGG
1 -A--AGCATC---G--TCG--G-AGAACCTGACCGGCGGCATTGGGGTTTCGGTGATC-GGGGGG
* * * * *
21104705 CCTGGGGGGTGTGCACAAATGATGTGCGATGGGTGTTGATACTTGGCCCTTATATTGGCCTCCTA
54 CCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG-TACTTGGCCCTTATATTGGCCCCCTA
* * * *
21104770 TCCCTCATCAAACCTTGAGAACTCACA-CCCCTTATAGAGCATTTCAAATTTTACAGGTTTGCTG
118 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * * *
21104834 CCAGTAGCCATTAAAATGTTTGAAATGGGGACACTTTTTTCAAAGGGTCACAAAATTTTGTACAT
183 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
21104899 TTTGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAAAAAAATACAAGTATCACGTCTAAAAAGT
248 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGT
* *
21104964 TTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
313 TTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* *
21105029 GTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
378 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
*
21105094 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAATCCCACCT
443 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
*
21105159 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCTGCCCGCCTA
508 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG----
* * * *
21105224 CCCGCCCACTCGTTTCGTCGGTCGGATTAGGCATACGAAGTTCATTCCCAGTCTAAG
569 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
21105281 CATACGGAGT
Statistics
Matches: 2835, Mismatches: 377, Indels: 162
0.84 0.11 0.05
Matches are distributed among these distances:
870 21 0.01
871 3 0.00
872 250 0.09
873 176 0.06
874 306 0.11
875 297 0.10
876 260 0.09
877 74 0.03
878 141 0.05
879 5 0.00
880 2 0.00
881 1 0.00
884 1 0.00
886 1 0.00
887 7 0.00
889 1 0.00
890 3 0.00
892 1 0.00
893 1 0.00
894 5 0.00
896 5 0.00
897 48 0.02
898 5 0.00
899 30 0.01
900 302 0.11
901 286 0.10
902 3 0.00
904 1 0.00
905 1 0.00
906 1 0.00
908 2 0.00
909 3 0.00
910 2 0.00
911 2 0.00
912 10 0.00
914 4 0.00
915 1 0.00
917 1 0.00
918 5 0.00
919 6 0.00
921 4 0.00
924 1 0.00
926 3 0.00
928 435 0.15
929 114 0.04
930 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (872 bp):
AAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTTCGGTGATCGGGGGGCCCGGGGGGTGT
GCGCACATGATGTGCGATGGGTGCTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAACAAGTTTGGGGCCAAAAC
TCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCG
TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGC
AGCAGGATCGGCAGCAAGCAGAGGGGGACCCGACCGATCCCCAGCTTGCGCATCTCGCCCCTCTG
GCCTGCTTAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACACAGTTCATTCCCAGTC
TAAGATCGGACCGGACCAAGGGTTGCCGCAGCACATGCTAGGCTCAGGCATGTGCTGGTGCCGCA
TTTTTCTTCATCAGGGCACCATCGCCG
Found at i:21104563 original size:26 final size:26
Alignment explanation
Indices: 21104486--21104563 Score: 138
Period size: 26 Copynumber: 3.0 Consensus size: 26
21104476 TGACTTAGCC
*
21104486 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGA
21104512 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
*
21104538 ATACGAAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
21104564 TCGGATTGGA
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:21105291 original size:26 final size:26
Alignment explanation
Indices: 21105254--21105332 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
21105244 GTCGGATTAG
*
21105254 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21105280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21105306 GAATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21105332 G
1 G
21105333 ATCGGATTGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21106060 original size:26 final size:26
Alignment explanation
Indices: 21106024--21106102 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
21106014 ATCGGATTAG
21106024 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21106050 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21106076 GAATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21106102 G
1 G
21106103 ATCGGATTGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21106676 original size:769 final size:770
Alignment explanation
Indices: 21104480--21106769 Score: 4314
Period size: 770 Copynumber: 3.0 Consensus size: 770
21104470 ATGGGTTGAC
* *
21104480 TTAGCCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAATACGAA
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAATACGGA
*
21104545 GTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCAT
*
21104610 GTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGAAGAACCTGACCG
131 GTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCGCCGAAGAACCTGACCG
*
21104675 ACAGCATTAGGGTTCCGGCGATCGGGGGGGCCTG-GGGGGTGTGCACAAATGATGTGCGATGGGT
196 GCAGCATTAGGGTTCCGGCGATCGGGGGGGCC-GAGGGGGTGTGCACAAATGATGTGCGATGGGT
*
21104739 GTTGATACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTA
260 GTTGATACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTA
21104804 TAGAGCATTTCAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACACT
325 TAGAGCATTTCAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACACT
21104869 TTTTTCAAAGGGTCACAAAATTTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGGGCATGCCA
390 TTTTTCAAAGGGTCACAAAATTTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGGGCATGCCA
21104934 AAAAAAATACAAGTATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAA
455 AAAAAAATACAAGTATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAA
21104999 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
520 AATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
21105064 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
585 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
21105129 AGAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
650 AGAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
*
21105194 TCTCTGGCTGGCGTAGTGCCTGCCCGCCTACCCGCCCACTCGTTTCGTCGGTCGGA
715 TCTCTGGCTGGCGTAGTGCCTGCCCGCCTACCCGCCCACTCGTTTCGTCGATCGGA
*
21105250 TTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAATACGGA
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAATACGGA
*
21105315 GTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTACAGCAGCACATGCTGGGCTCGAGCAT
66 GTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCAT
21105380 GTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCGCCGAAGAACCTGACCG
131 GTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCGCCGAAGAACCTGACCG
* * *
21105445 GCAGCATTAGGGTTCCGACGATCGGGGGGGCCGACGGGGTGTGCACAAATGATGTGTGATGGGTG
196 GCAGCATTAGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCACAAATGATGTGCGATGGGTG
21105510 TTGATACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAT
261 TTGATACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAT
*
21105575 AGAGCATTTCAAATTTTACAAGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACACTT
326 AGAGCATTTCAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACACTT
*
21105640 TTTTCAAAGGGTCACAAAATTTTGTACATTTTGAGTTTTTAGTTGAATTTTTTTGGGCATGCCAA
391 TTTTCAAAGGGTCACAAAATTTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAA
21105705 AAAAAATACAAGTATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAA
456 AAAAAATACAAGTATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAA
* *
21105770 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCAGGAAAC
521 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
21105835 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
586 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
21105900 GAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
651 GAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
21105965 CTCTGGCTGGCGTAGTGCCTGCCCGCCTACCCGCCCACTCGTTTCGTCGATCGGA
716 CTCTGGCTGGCGTAGTGCCTGCCCGCCTACCCGCCCACTCGTTTCGTCGATCGGA
21106020 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAATACGGA
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAATACGGA
21106085 GTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCAT
21106150 GTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCGCCGAAGAACCTGACCG
131 GTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCGCCGAAGAACCTGACCG
21106215 GCAGCATTAGGGTTCCGGCGATC-GGGGGGCCGAGGGGGTGTGCACAAATGATGTGCGATGGGTG
196 GCAGCATTAGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCACAAATGATGTGCGATGGGTG
21106279 TTGATACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAT
261 TTGATACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAT
*
21106344 AGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACACTT
326 AGAGCATTTCAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACACTT
*
21106409 TTTTCAACGGGTCACAAAATTTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAA
391 TTTTCAAAGGGTCACAAAATTTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAA
* * *
21106474 AAAAAATACAAGTACCACTTCTAAAAGGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAA
456 AAAAAATACAAGTATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAA
*
21106539 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
521 ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
* *
21106604 TTCACGTGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCA
586 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
* *
21106669 AAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCT
651 GAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
*
21106734 CTCTGGCCGGCGTAGTGCCTGCCCGCCTACCCGCCC
716 CTCTGGCTGGCGTAGTGCCTGCCCGCCTACCCGCCC
21106770 GCCTACCCGC
Statistics
Matches: 1483, Mismatches: 36, Indels: 3
0.97 0.02 0.00
Matches are distributed among these distances:
769 516 0.35
770 967 0.65
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (770 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAATACGGA
GTTCATTCCCAGTCTAAGATCGGATTGGATCGAGGGTTACAGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGTCGCCGAAGAACCTGACCG
GCAGCATTAGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCACAAATGATGTGCGATGGGTG
TTGATACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAT
AGAGCATTTCAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTTTGAAATGGGGACACTT
TTTTCAAAGGGTCACAAAATTTTGTACATTTTGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAA
AAAAAATACAAGTATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAA
ATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAATCCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGGCTGGCGTAGTGCCTGCCCGCCTACCCGCCCACTCGTTTCGTCGATCGGA
Found at i:21106771 original size:12 final size:12
Alignment explanation
Indices: 21106754--21106781 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
21106744 CGTAGTGCCT
21106754 GCCCGCCTACCC
1 GCCCGCCTACCC
21106766 GCCCGCCTACCC
1 GCCCGCCTACCC
21106778 GCCC
1 GCCC
21106782 ACTCGTTTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.07, C:0.68, G:0.18, T:0.07
Consensus pattern (12 bp):
GCCCGCCTACCC
Found at i:21107004 original size:26 final size:26
Alignment explanation
Indices: 21106965--21107024 Score: 79
Period size: 26 Copynumber: 2.4 Consensus size: 26
21106955 GTTGACTTAG
* *
21106965 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGATTTCATTCCCAGTCTAA
*
21106991 GCATACAGATTTCATTCCCATTCTAA
1 GCATACAGATTTCATTCCCAGTCTAA
21107017 G-AT-CAGAT
1 GCATACAGAT
21107025 CAGACCAAGG
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 24 0.77
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGATTTCATTCCCAGTCTAA
Found at i:21107427 original size:915 final size:903
Alignment explanation
Indices: 21106050--21107815 Score: 2480
Period size: 915 Copynumber: 1.9 Consensus size: 903
21106040 CCCAGTCTAA
* * ** *
21106050 GCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
* ** *
21106115 CGAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGG
66 CAAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
* *
21106180 CACCATCGTCGGAGCGTCGCCGAAGAACCTGACCGGCAGCATTAGGGTTCCGGCGATCGGGGGGC
131 CACCATCGTCGGAGCATCGCCGAAGAACCTGACCGACAGCATTAGGGTTCCGGCGATCGGGGGGC
* * * *
21106245 CGAGGGGGTGTGCACAAATGATGTGCGATGGGTGTTGATACTTGGCCCTTATATTGGCCTCCTAT
196 CGAGGGGGTGTGCACAAATGATGTGCGATGGGAGCTGACACTTGGCCCTTATATTGGCCCCCTAT
* *
21106310 CCCTCATCAAACCTCGAGAACTCACACCCCTTATAGAGCATTTCAGATTTTACAGGTTTGCTGCC
261 CCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACC
* ** * *
21106375 AGTAGCCATTAAAATGTTTGAAATGGGGACACTTTTTTCAACGGGTCACAAAATTTTGTACATTT
326 AGTAGCCATTAAAATGTTTGAAATGGGGACACTTTTTTCAACGAGTCACAAAATCATATACACTT
* * * *
21106440 TGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAAAAAAAATACAAGTACCACTTCTAAAAGGTTT
391 CGAGTTTGTAGCTGAATTTTTTTGGGCATGCCAAAAAAAATACAAGTACCACGTCTAAAAGGTAT
* * * *
21106505 GGGGCCAAAACTCCTTCCGAAAGAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGT
456 AGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCACGAACCGTAAAAAGTTTCAAAAATCAT
*
21106570 GAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATGGTATG
521 GAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATGGTATG
*
21106635 AATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAATCCCACCTAC
586 AATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
* ** * * * *
21106700 CACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCTACC
651 CACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGACCGACATAGTGCCCGCCCG----CC
*
21106765 CGCCCGCCTACCCGCCCACTCGTTTCGTCGGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTA
712 CGCCCG-CT---CG----CTCGTTTCGTCAGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTA
* ** * ** * *
21106830 AGATTGGTCCGGACAGAGAGTTGTGGCAGCAAGATCGGCAGCACGTAGAGGGGGACCCGACCGAT
769 AGATCGAACAGGACAGAGAGTTACGGCAGCAAGATCGACAGCACGTAGAGGAGGACCCGACCGAT
*
21106895 CCCCGACTTGCGCATCCCACCCCTCTGGTCCGCTGAGCACCCGTACGCTCGTTTCGTGTGGTTGA
834 CCCCGACTTACGCATCCCACCCCTCTGGTCCGCTGAGCACCCGTACGCTCGTTTCGTGTGGTTGA
21106960 CTTAG
899 CTTAG
* * *
21106965 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGATTTCATTCCCATTCTAAGATCAGATCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGAATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
* *
21107030 CAAGGGTTGCAGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
66 CAAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
* * * * *
21107095 CAGCATCGTCGGAGCATCGCC-AGAGAACCTGACCGACAGCATTGGGGTTCTGGTGATTGGGGGG
131 CACCATCGTCGGAGCATCGCCGA-AGAACCTGACCGACAGCATTAGGGTTCCGGCGATCGGGGGG
* * * * * *
21107159 TCGGGGGGGTGTGCGCACATGATGTGGGATGGGAGCTGGCACTTGGCCCTTATATTGGCCCCCTA
195 CCGAGGGGGTGTGCACAAATGATGTGCGATGGGAGCTGACACTTGGCCCTTATATTGGCCCCCTA
* *
21107224 TCCCTCATCAAACCAT-GAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCT
260 TCCCTCATCAAACC-TCGAGAACTCACA-CCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCT
*
21107288 ACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAAC-AGTCACAAAATCATATAC
323 ACCAGTAGCCATTAAAATGTTTGAAATGGGGACACTTTTTTC-AACGAGTCACAAAATCATATAC
*** * * * *
21107352 ACTTCGAGTTTGTAGCTGAATTTTTTTTTTCATGCGAAGAAAAATACAAG-ATCACGTCTACCAA
387 ACTTCGAGTTTGTAGCTGAATTTTTTTGGGCATGCCAAAAAAAATACAAGTACCACGTCTA-AAA
* * *
21107416 -GTATAGGGCCAAAACTCCTTCTGAAAAAATTTTGAAAAATCAGGAACCGTAAAAAGTTTCAAAA
451 GGTATAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCACGAACCGTAAAAAGTTTCAAAA
* * *
21107480 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGAGCATT
516 ATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATG
* * * *
21107545 GTATGAATTTACAAGCCATAAAAGTGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCA
581 GTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCA
* * * *
21107610 CCTACCACCCTATCAATCTACGGCTTACGCATCCCGTTTCTTTGATCGACATAGTGCCCGCCCGC
646 CCTACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGACCGACATAGTGCCCGCCCGC
* *
21107675 CCGCCCGCTCGCTCGTTTCTTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA
711 CCGCCCGCTCGCTCGTTTCGTCAGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA
* * * * *
21107740 ACAGGACCGAGGGTTACGGCAGTAGGATCGACAGCACGTAGAGGAGGACCCGACTGATCCCCGAC
776 ACAGGACAGAGAGTTACGGCAGCAAGATCGACAGCACGTAGAGGAGGACCCGACCGATCCCCGAC
21107805 TTACGCATCCC
841 TTACGCATCCC
21107816 TCATCAAACC
Statistics
Matches: 750, Mismatches: 96, Indels: 22
0.86 0.11 0.03
Matches are distributed among these distances:
903 113 0.15
907 2 0.00
910 2 0.00
911 8 0.01
914 1 0.00
915 489 0.65
916 132 0.18
917 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGAATACAGAGTTCATTCCCAGTCTAAGATCAGATCAGAC
CAAGGGTTACAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGG
CACCATCGTCGGAGCATCGCCGAAGAACCTGACCGACAGCATTAGGGTTCCGGCGATCGGGGGGC
CGAGGGGGTGTGCACAAATGATGTGCGATGGGAGCTGACACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTACC
AGTAGCCATTAAAATGTTTGAAATGGGGACACTTTTTTCAACGAGTCACAAAATCATATACACTT
CGAGTTTGTAGCTGAATTTTTTTGGGCATGCCAAAAAAAATACAAGTACCACGTCTAAAAGGTAT
AGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCACGAACCGTAAAAAGTTTCAAAAATCAT
GAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATGGTATG
AATTTACAAGCCATAAAAATGGCATTGGCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGACCGACATAGTGCCCGCCCGCCCGCC
CGCTCGCTCGTTTCGTCAGTTGGATTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACAGG
ACAGAGAGTTACGGCAGCAAGATCGACAGCACGTAGAGGAGGACCCGACCGATCCCCGACTTACG
CATCCCACCCCTCTGGTCCGCTGAGCACCCGTACGCTCGTTTCGTGTGGTTGACTTAG
Found at i:21108339 original size:588 final size:588
Alignment explanation
Indices: 21107223--21108349 Score: 1656
Period size: 588 Copynumber: 1.9 Consensus size: 588
21107213 TTGGCCCCCT
* *
21107223 ATCCCTCATCAAACCATGAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCT
1 ATCCCTCATCAAACCATAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
21107288 ACCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCATATACA
66 ACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCATATACA
* * * * *
21107353 CTTCGAGTTTGTAGCTGAATTTTTTTTTTCATGCGAAGAAAAATACAAGATCACGTCTACCAAGT
131 CTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGATCACGTCTACCAAGT
* * ** *
21107418 ATAGGGCCAAAACTCCTTCTGAAAAAATTTTGAAAAATCAGGAACCGTAAAAAGTTTCAAAAATC
196 ATAGGGACAAAACTCCTGCTGAAAAAATTTAAAAAAATCACGAACCGTAAAAAGTTTCAAAAATC
* * * * *
21107483 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGAGCATTGTA
261 ATGAAAAATAGAAAACGACTCATCTTGCCATGAAACTTCACATGAAAGCTTAAGGGACCACTGTA
* * *
21107548 TGAATTTACAAGCCATAAAAGTGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
326 TGAATTTACAAGCCATAAAAATGGCATTGGCAAGAAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * *
21107613 ACCACCCTATCAATCTACGGCTTACGCATCCCGTTTCTTTGATCGACATAGTGCCCGCCCGCCCG
391 ACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGACCGACATACTGCCCGCCCGCCCA
* * *
21107678 CCCGCTCGCTCGTTTCTTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACA
456 CCCGCTCGCTCGTTTCATCAGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGAACA
21107743 GGACCGAGGGTTACGGCAGTAGGATCGACAGCACGTAGAGGAGGACCCGACTGATCCCCGACTTA
521 GGACCGAGGGTTACGGCAGTAGGATCGACAGCACGTAGAGGAGGACCCGACTGATCCCCGACTTA
21107808 CGC
586 CGC
21107811 ATCCCTCATCAAACC-TCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
1 ATCCCTCATCAAACCAT-AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
* ** * *
21107875 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
65 TACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCATATAC
21107940 ACTTCGAGTTT-TCAGCTGAA-TTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTACCA
130 ACTTCGAGTTTGT-AGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAA-GATCACGTCTACCA
* * * *
21108003 AGTTTGGGGATAAAACTCCATGC-GAAAAAATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAA
193 AGTATAGGGACAAAACTCC-TGCTGAAAAAATTTAAAAAAATCACGAACCGTAAAAAGTTTCAAA
* * *
21108067 AATCATGAAAAATAGAAAACGACTCATCTTGCCATGAAATTTCACATGAAGGCTTAAGGGACCGC
257 AATCATGAAAAATAGAAAACGACTCATCTTGCCATGAAACTTCACATGAAAGCTTAAGGGACCAC
*
21108132 TGTATGTATTTACAAGCCATAAAAATGGCATTGGCAAGAAGAAATATGAAGATGTGCCTAAACCC
322 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAGAAGAAATATGAAGATGTGCCTAAACCC
* * * *
21108197 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-AGCGTACTGCCCGCCC
387 ACCTACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGACCGA-CATACTGCCCGCCC
* * * * *
21108261 GCCTACCTGCTCGCTTGTTTCATCGGTTGGCTTAAGCATACGTAGTTCATTCCCAGTCTAAGATT
451 GCCCACCCGCTCGCTCGTTTCATCAGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGA-T
* *
21108326 AG-TCTA-GACCGAGGGTTGCGGCAG
515 AGAAC-AGGACCGAGGGTTACGGCAG
21108350 CACGCAGAAA
Statistics
Matches: 478, Mismatches: 54, Indels: 14
0.88 0.10 0.03
Matches are distributed among these distances:
587 26 0.05
588 447 0.94
589 5 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (588 bp):
ATCCCTCATCAAACCATAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
ACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAACAGTCACAAAATCATATACA
CTTCGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGATCACGTCTACCAAGT
ATAGGGACAAAACTCCTGCTGAAAAAATTTAAAAAAATCACGAACCGTAAAAAGTTTCAAAAATC
ATGAAAAATAGAAAACGACTCATCTTGCCATGAAACTTCACATGAAAGCTTAAGGGACCACTGTA
TGAATTTACAAGCCATAAAAATGGCATTGGCAAGAAGAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCAATCCACGGCTTACGCATCCCGTCTCTCTGACCGACATACTGCCCGCCCGCCCA
CCCGCTCGCTCGTTTCATCAGTTGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGAACA
GGACCGAGGGTTACGGCAGTAGGATCGACAGCACGTAGAGGAGGACCCGACTGATCCCCGACTTA
CGC
Found at i:21110212 original size:26 final size:26
Alignment explanation
Indices: 21110176--21110228 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21110166 GTTGACTTAG
21110176 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21110202 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21110228 G
1 G
21110229 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21111043 original size:902 final size:902
Alignment explanation
Indices: 21109300--21111186 Score: 3258
Period size: 902 Copynumber: 2.1 Consensus size: 902
21109290 GTTGACTTAG
21109300 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGATAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGATAGCACATGCTAGG
21109365 CTCGGGCATTGCTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCGCCGGAGCATCGTCGAAGAA
66 CTCGGGCATTGCTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCGCCGGAGCATCGTCGAAGAA
21109430 CCTGATCGGCAGCATTGGGGTTCCGAAGATCGAGGGGGCCGGGGGGTGTGTGCACATGATGTGCG
131 CCTGATCGGCAGCATTGGGGTTCCGAAGATCGAGGGGGCCGGGGGGTGTGTGCACATGATGTGCG
21109495 ATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
21109560 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAG
21109625 GGACACTTTTTTCCAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAACTTTTTTATG
326 GGACACTTTTTTCCAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAACTTTTTTATG
*
21109690 CATGCAACCAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAGAAAAT
391 CATGCAACCAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAAAACCTTCCGAGAAAAT
21109755 TTTAAAAATTCTCGATCCGTAAAAAGTTTCAAAAATCGTAAAAAATAAAAAATGAGTCGTCTTCC
456 TTTAAAAATTCTCGATCCGTAAAAAGTTTCAAAAATCGTAAAAAATAAAAAATGAGTCGTCTTCC
21109820 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATT
* * * *
21109885 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTACCGATCCACAGGTTGCACA
586 GGCACACAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTACCGATCAAAAGCTTGCACA
* * * *
21109950 TCCCGTCTCTCTGGCTGACGTAGTGCCCATCCATCCACCTGGCCGCTCGTTTCGTCGGTTAGCTT
651 TCCCGTCTCTCTGGCCGACGTAGTGCCCATCCACCCACCTCGCCGCTCGTTTCATCGGTTAGCTT
* *
21110015 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGACAACGGCATCGA
716 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAACGGCATCGA
* *
21110080 CAAGACGCAGAGGAGGACCCGATCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGTTGAGC
781 CAAGACGCAGAGGAGGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGTTGAGC
* * *
21110145 ACCCGCACGTTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
846 ACCCGCACGCTCATTTCGTGGGATGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
21110202 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGATAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGATAGCACATGCTAGG
21110267 CTCGGGCATTGCTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCGCCGGAGCATCGTCGAAGAA
66 CTCGGGCATTGCTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCGCCGGAGCATCGTCGAAGAA
21110332 CCTGATCGGCAGCATTGGGGTTCCGAAGATCGAGGGGGCCGGGGGGTGTGTGCACATGATGTGCG
131 CCTGATCGGCAGCATTGGGGTTCCGAAGATCGAGGGGGCCGGGGGGTGTGTGCACATGATGTGCG
21110397 ATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
196 ATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
*
21110462 CCCCTTAAAGAGCATTTGAGATTTTACTGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAG
21110527 GGACACTTTTTTCCAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAACTTTTTTATG
326 GGACACTTTTTTCCAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAACTTTTTTATG
*
21110592 CATGCAACCAAAAATACAAGGATCGTGTCTACCAAGTTTGGGGCCAAAAAACCTTCCGAGAAAAT
391 CATGCAACCAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAAAACCTTCCGAGAAAAT
*
21110657 TTTAAAAATTCTCGATCCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCTTCC
456 TTTAAAAATTCTCGATCCGTAAAAAGTTTCAAAAATCGTAAAAAATAAAAAATGAGTCGTCTTCC
*
21110722 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATT
** * *
21110787 GGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATCAAAAGCTTGCGCA
586 GGCACACAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTACCGATCAAAAGCTTGCACA
* * ** * *
21110852 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCGGCCCACC-CGCCTGCTCGTTTCATTGGTTGGCT
651 TCCCGTCTCTCTGGCCGACGTAGTGCCCATCCACCCACCTCGCC-GCTCGTTTCATCGGTTAGCT
* *
21110916 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGATAACAGG-ATC
715 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAAC-GGCATC
* * * * *
21110980 GAC-AGCACGCAGAGGGGGACCCGGTCGATCCCCGATTTACGTATCTCGCCCCTCTGGCCGGTTG
779 GACAAG-ACGCAGAGGAGGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGTTG
* * * *
21111044 AGCACCCGCACGCTCGTTTTGTGGGATGGCTTAGGTATACGAAGTTCATTCCCAGTCTAA
843 AGCACCCGCACGCTCATTTCGTGGGATGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * ** * * * ** *
21111104 GCATACGGAGTTTATTCCCAATCTAAGATTGGATCGGACCGAGGGTGGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGATAGCACATGCTAGG
21111169 CTCGGGCATGTGCTGGTG
66 CTCGGGCAT-TGCTGGTG
21111187 TCATATTTTT
Statistics
Matches: 930, Mismatches: 51, Indels: 7
0.94 0.05 0.01
Matches are distributed among these distances:
901 5 0.01
902 915 0.98
903 10 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGATAGCACATGCTAGG
CTCGGGCATTGCTGGTGCCGCATTTTTCTTCGTCGGGCCACCATCGCCGGAGCATCGTCGAAGAA
CCTGATCGGCAGCATTGGGGTTCCGAAGATCGAGGGGGCCGGGGGGTGTGTGCACATGATGTGCG
ATGGGTGCTGGTACTTGTCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAG
GGACACTTTTTTCCAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAACTTTTTTATG
CATGCAACCAAAAATACAAGGATCGCGTCTACCAAGTTTGGGGCCAAAAAACCTTCCGAGAAAAT
TTTAAAAATTCTCGATCCGTAAAAAGTTTCAAAAATCGTAAAAAATAAAAAATGAGTCGTCTTCC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATT
GGCACACAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTACCGATCAAAAGCTTGCACA
TCCCGTCTCTCTGGCCGACGTAGTGCCCATCCACCCACCTCGCCGCTCGTTTCATCGGTTAGCTT
AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGACAACGGCATCGA
CAAGACGCAGAGGAGGACCCGATCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGGTTGAGC
ACCCGCACGCTCATTTCGTGGGATGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:21111120 original size:26 final size:26
Alignment explanation
Indices: 21111080--21111130 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21111070 TGGCTTAGGT
*
21111080 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAATCTAAGC
* *
21111106 ATACGGAGTTTATTCCCAATCTAAG
1 ATACGAAGTTCATTCCCAATCTAAG
21111131 ATTGGATCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAATCTAAGC
Found at i:21112002 original size:840 final size:842
Alignment explanation
Indices: 21110359--21112571 Score: 2517
Period size: 840 Copynumber: 2.6 Consensus size: 842
21110349 GGGTTCCGAA
** *
21110359 GATCGAGGGGGCCGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGTCCCTTATAT
1 GATCGAGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
21110424 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
66 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
21110489 TGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATAGGGACACTTTTTTCCAATGGTCACAAAA
131 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAA
* **
21110554 TCTTGTACACATCGAGTTTTTAGCTGAACTTTTTTATGCATGCAACCAAAAATACAAGGATCGTG
196 TCTTGAACACATCGAGTTTTTAGCTGAACTTTTTTATGCATGCAACCAAAAATACAAGGATCACG
* * * * *
21110619 TCTACCAAGTTTGGGGCCAAAAAACCTTCCGAGAAAATTTTAAAAATTCTCGATCCGTAAAAAGT
261 TCTACCAAGTTTGGGGCCAAAAAACCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGT
* *
21110684 TTCAAAAATCGTAAAAAATAGAAAATGAGTCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGG
326 TTCAAAAATCGTAAAAAATAGAAAACGAATCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGG
* *
21110749 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
391 GACCATTGTATGAAATTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCT
* *
21110814 AAACACACCTACCACCCTATCGATCAAAAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
456 AAACACACCTACCACCCTATCGATCAAAAGCATGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * * *
21110879 CGTCGGCCCACCCGCCTGCTCGTTTCATTGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTA
521 CGCCGGCCCACCCGCCTGCTCGTTTCATCGGTTGGCATAGGCATACAGAGTTCATTCCCAGTCCA
* * * **
21110944 AGATCAGACCAGACCGAGGGTTGCGATAACAGGATCGACAGCACGCAGAGGGGGACCCGGTCGAT
586 AGATCAGACCACACCAAGGGTTGCGATAACAAGATCGACAGCACGCAGAGGGGGACCCAATCGAT
* * * * * *
21111009 CCCCGATTTACGTATCTCGCCCCTCTGGCCGGTTGAGCACCCGCACGCTCGTTTTGTGGGATGGC
651 CCCCGACTTACGCATCACGCCCCTCTGGCCGGTTGAGCACCCGCAAGCTCGTTTCGTGGGATGAC
* * * *
21111074 TTAGGTATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTTATTCCCAATCTAAGATTGGATC
716 TTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACC
* * * *
21111139 GGACCGAGGGTGGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCATATTTTTCGAC
781 GGACCAAGGATGACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCATATTTTTCGAC
21111201 GATCG-GGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
1 GATCGAGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
21111265 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
66 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
21111330 AGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACTCTTTTTTCAAATGGTCACAAAA
131 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
21111395 TCTTGAACACTTCTAGTTTTTAGCTGAA-TTTTTTATGCATGCTAA-CAATATTACAAGGATCAC
196 TCTTGAACACATCGAGTTTTTAGCTGAACTTTTTTATGCATGC-AACCAAAAATACAAGGATCAC
*** * *
21111458 GTCTACCAAGTTTGGGGCCAAAACTTCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTCAAAAT
260 GTCTACCAAGTTTGGGGCCAAAAAACCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAG
** * * *
21111523 TTTTTAAAATCGTGAAAGATAGAAAACGAATCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
325 TTTCAAAAATCGTAAAAAATAGAAAACGAATCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAG
* *
21111588 GGACCATTGTATGAAATTACAAGCCATAAAAATGGAATTGGCATGCAGAAATGTTAAGATGTGCC
390 GGACCATTGTATGAAATTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCC
* * * ** * *
21111653 TAAACCCACCTACCACCCTATTGATCCACGGCATGTGCATCCCGTCTCTCTGGCCGATGTAGTGC
455 TAAACACACCTACCACCCTATCGATCAAAAGCATGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
* * * *
21111718 CCGCCTGCCCGCCCG-CTCGCTCGTTTCGTCGGTTGGCATAGGCATACGGAGTTCATTCCCAGTC
520 CCGCCGGCCCACCCGCCT-GCTCGTTTCATCGGTTGGCATAGGCATACAGAGTTCATTCCCAGTC
* * * * *
21111782 CAAGATCGGACCACACCAAGGGTTGCGGTAGCAAGATCGGCAGCACGTAGAGGGGGACCCAATCG
584 CAAGATCAGACCACACCAAGGGTTGCGATAACAAGATCGACAGCACGCAGAGGGGGACCCAATCG
* * * * * *
21111847 ATCCCCGGCTTGCGCATCACGCCCCTCTGGCCGGTTGAGCGCCTGTAAGCTCGTTTCGTGGGTTG
649 ATCCCCGACTTACGCATCACGCCCCTCTGGCCGGTTGAGCACCCGCAAGCTCGTTTCGTGGGATG
* *
21111912 ACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATTGGA
714 ACTTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGA
* * *
21111977 CCGGACCAAGGATTACGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCTGCATTTGTCTTCA
779 CCGGACCAAGGATGACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG-T-CATAT-T-TT--
21112042 TCGGGGCAC
838 TC---G-AC
* * * * * ** * **
21112051 CATCGCCGGAGAACCTGACCGGCGACATTGGG-GTTTCGACGA-TTGGGCGGGCCGGGGGGTG-T
1 GATCG-AGG-G-----GGCCGG-G-----GGGTG-TGC-AC-ACAT-GATGTG-CGATGGGTGCT
* *** * *
21112113 GCGCACATGATGTGTGATGGGTGCTAGTATTTGGCCCTTATATTGGCCCCCAATCCCCCATCAAA
48 G-GTAC----T-TG-G--CCCT--TA-TA-TT-G-----------GCCCCCTATCCCTCATCAAA
* *
21112178 CCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATT
88 CCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
21112243 AAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
153 AAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACATCGAGTTTTTA
** * * * *
21112308 GCTGATGTTTTTTGTGCATGCCAA-CAAAAATTCAAACGATCACGTCAAGACCCAAGTTTGGGG-
218 GCTGAACTTTTTTATGCATG-CAACCAAAAATAC-AAGGATCACGTC--TA-CCAAGTTTGGGGC
* * *
21112371 C--AAAACCTAGTTCCTGAAAAAATTTTTCAAAAATC-CAAGAACCATAAAAAGTTTCAAAAATC
278 CAAAAAACC---TTCC--AAAAAAATTTTAAAAAATCTC-A-AACCGTAAAAAGTTTCAAAAATC
* * *
21112433 GTGAAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCCAATGTGAAGGCTTAAGGGACCATT
336 GT-AAAAAATAGAAAACGAATCGTCTTCCCATGAAACTT-C-ACGTGAAGGCTTAAGGGACCATT
* *
21112498 GTAAATGAAATTTACAAGGCATAAAAATGGACATTGGCACAGC-GAAATATGAAGATGTTGCCTA
398 GT--ATGAAA-TTACAAGCCATAAAAATGGA-ATTGGCA-TGCAGAAATATGAAGATG-TGCCTA
*
21112562 AACCCACCTA
457 AACACACCTA
21112572 TCGTCCTAAC
Statistics
Matches: 1157, Mismatches: 136, Indels: 91
0.84 0.10 0.07
Matches are distributed among these distances:
839 2 0.00
840 522 0.45
841 207 0.18
842 9 0.01
843 1 0.00
844 2 0.00
846 2 0.00
849 1 0.00
850 6 0.01
852 2 0.00
853 1 0.00
858 5 0.00
859 1 0.00
863 1 0.00
864 5 0.00
865 3 0.00
866 6 0.01
867 10 0.01
871 1 0.00
872 2 0.00
873 1 0.00
875 1 0.00
877 2 0.00
878 2 0.00
879 2 0.00
880 1 0.00
891 147 0.13
892 20 0.02
893 15 0.01
895 2 0.00
896 16 0.01
897 1 0.00
898 18 0.02
899 20 0.02
900 33 0.03
901 1 0.00
902 24 0.02
904 6 0.01
905 19 0.02
906 19 0.02
907 18 0.02
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (842 bp):
GATCGAGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGAACACATCGAGTTTTTAGCTGAACTTTTTTATGCATGCAACCAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAAAACCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGT
TTCAAAAATCGTAAAAAATAGAAAACGAATCGTCTTCCCATGAAACTTCACGTGAAGGCTTAAGG
GACCATTGTATGAAATTACAAGCCATAAAAATGGAATTGGCATGCAGAAATATGAAGATGTGCCT
AAACACACCTACCACCCTATCGATCAAAAGCATGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
CGCCGGCCCACCCGCCTGCTCGTTTCATCGGTTGGCATAGGCATACAGAGTTCATTCCCAGTCCA
AGATCAGACCACACCAAGGGTTGCGATAACAAGATCGACAGCACGCAGAGGGGGACCCAATCGAT
CCCCGACTTACGCATCACGCCCCTCTGGCCGGTTGAGCACCCGCAAGCTCGTTTCGTGGGATGAC
TTAGGCATACAAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATTGGACC
GGACCAAGGATGACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCATATTTTTCGAC
Found at i:21117669 original size:26 final size:26
Alignment explanation
Indices: 21117640--21117692 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21117630 GTTGACTTAG
*
21117640 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
*
21117666 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
21117692 G
1 G
21117693 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:21119207 original size:26 final size:26
Alignment explanation
Indices: 21119169--21119221 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21119159 GTTGACTTAG
21119169 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
*
21119195 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
21119221 G
1 G
21119222 ATTGGACAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:21120573 original size:715 final size:706
Alignment explanation
Indices: 21119264--21120711 Score: 2175
Period size: 715 Copynumber: 2.0 Consensus size: 706
21119254 GCTAGGCTGG
* * * * *
21119264 GGCATGTGCTGGTGCCGCATTTTTCTTTATCGGGGAACCATTGCCGGAGCATCGTCGGAGAACCT
1 GGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGAACCATCGCCGGAGCATCGCCAGAGAACCT
* * * *
21119329 GACCGACGGCATTAGGGTTCTGACGATCGGGGGAGCCGGGGGGTGTGCGCTCATGATGTGCGATG
66 GACCGACGGCATTAGGGTTCCGACGATCGGGGGAGCCGGGGGGTGTGCGCACAAGATGTACGATG
* *
21119394 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
131 GGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCAC
* **
21119459 CTTAAAGACCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAATGGGGA
196 CTTAAAGACCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
21119524 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAT
261 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTATGAGTTTTTAGCTGAATTTTTTTGTGCAT
* *
21119589 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTTCTTCCGAAAAAATTTT
326 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTTT
* **
21119654 AAAAAATCCTGAACCACAAAAAGTTTCGTAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
391 AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
21119719 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
456 GAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
21119784 ACACAAAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
521 ACACAAAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTACACATCC
*
21119849 CGTCTCTCTGGCCGGAGTAGTGCCTGCCCGTCCGTCCGCTCGTTTCGTCGGTTAGCTTAGGCATA
586 CGTCTCTCTGGCCGGAGTA--G--TGCCCG--C--CCGCTCGTTTCGTCGATTAGCTTAGGCATA
* * * *
21119914 C-GAAGTTCATTCCCAATCTAAGATCAGACCTG-ACCGATGGTTACGGCAGCACATATTGGGCTC
643 CAG-AGTTCATTCCCAATCTAAGATCAGACC-GAACCGAGGGTTACGACAACACATATTAGGCTC
21119977 A
706 A
* * *
21119978 GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGAGCCT
1 GGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGAACCATCGCCGGAGCATCGCCAGAGAACCT
* * *
21120043 GACC-AGCGGCATTGGGGTTCCGGCGATCGGGGGTGCCGGGGGGGTGTGCGCACAAGATGTACGA
66 GACCGA-CGGCATTAGGGTTCCGACGATCGGGGGAGCC-GGGGGGTGTGCGCACAAGATGTACGA
*
21120107 TGGGTGCTGGTACTTGGCCCTTATATTGGCACCGTATCCCTCATCAAACCTCAAGAACTCACACC
129 TGGGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACC
* *
21120172 ACCTTAAAGAGCATTTGGGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATGGG
194 ACCTTAAAGACCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATGGG
*
21120237 GACAGTTTTTTCAAATGGTCACAAAATCCTGTACACTATGAGTTTTTAGCTGAATTTTTGTT-TG
259 GACACTTTTTTCAAATGGTCACAAAATCCTGTACACTATGAGTTTTTAGCTGAATTTTT-TTGTG
* * ** *
21120301 CATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGGCAAAAATCCTTTCGAAAAAAT
323 CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCGAAAAAAT
* *
21120366 TTTAAAAAATCCCGAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
388 TTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
21120431 CATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATT
453 CATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* ** * * * *
21120496 GGGACGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTATTGATCCACGGCTTACACA
518 GGCACACAAAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTACACA
* * * * *
21120561 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCTTGTTTTGTTGATTGGCTTAGGCATACAGAG
583 TCCCGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCTCGTTTCGTCGATTAGCTTAGGCATACAGAG
* * *
21120626 TTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTACGACAACACATGTTAGGCTCG
648 TTCATTCCCAATCTAAGATCAGACCGAACCGAGGGTTACGACAACACATATTAGGCTCA
* *
21120685 GGCATGTGCTGGTGCCATAATTTTCTT
1 GGCATGTGCTGGTGCCACATTTTTCTT
21120712 TGCCGGCTGA
Statistics
Matches: 665, Mismatches: 64, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
706 1 0.00
707 103 0.15
708 1 0.00
709 1 0.00
711 6 0.01
713 2 0.00
714 88 0.13
715 461 0.69
716 2 0.00
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (706 bp):
GGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGAACCATCGCCGGAGCATCGCCAGAGAACCT
GACCGACGGCATTAGGGTTCCGACGATCGGGGGAGCCGGGGGGTGTGCGCACAAGATGTACGATG
GGTGCTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACACCAC
CTTAAAGACCATTTGAGATTTTACAGGTTTACTACCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCCTGTACACTATGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAAATCCTTCCGAAAAAATTTT
AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ACACAAAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTACACATCC
CGTCTCTCTGGCCGGAGTAGTGCCCGCCCGCTCGTTTCGTCGATTAGCTTAGGCATACAGAGTTC
ATTCCCAATCTAAGATCAGACCGAACCGAGGGTTACGACAACACATATTAGGCTCA
Found at i:21120782 original size:26 final size:26
Alignment explanation
Indices: 21120752--21120805 Score: 81
Period size: 26 Copynumber: 2.1 Consensus size: 26
21120742 TGGGTTGACT
* * *
21120752 TAGGCATATGGAGTTCGTTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAATC
21120778 TAGGCATACGGAGTTCATTCCCAATC
1 TAGGCATACGGAGTTCATTCCCAATC
21120804 TA
1 TA
21120806 AGATCGGACC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAATC
Found at i:21121656 original size:26 final size:26
Alignment explanation
Indices: 21121626--21121675 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
21121616 GACTAAGGCA
21121626 TATGGAGTTCATTCCCAGTCTAAGCG
1 TATGGAGTTCATTCCCAGTCTAAGCG
21121652 TATGGAGTTCATTCCCAGTCTAAG
1 TATGGAGTTCATTCCCAGTCTAAG
21121676 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.22, G:0.22, T:0.32
Consensus pattern (26 bp):
TATGGAGTTCATTCCCAGTCTAAGCG
Found at i:21122515 original size:26 final size:26
Alignment explanation
Indices: 21122479--21122531 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21122469 GTTGACTTAG
*
21122479 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21122505 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21122531 G
1 G
21122532 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21123421 original size:25 final size:25
Alignment explanation
Indices: 21123392--21123439 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
21123382 GTTGACTTAG
21123392 GCATACGGAGTTCATTCCCAGTCAA
1 GCATACGGAGTTCATTCCCAGTCAA
*
21123417 GCATACGGAGTTCATTCCTAGTC
1 GCATACGGAGTTCATTCCCAGTC
21123440 TAAGATCAGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.25, C:0.27, G:0.21, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTCAA
Found at i:21125234 original size:26 final size:26
Alignment explanation
Indices: 21125197--21125275 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
21125187 GTTGACTTAG
*
21125197 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACATAGTTCATTCCCAGTCTAA
21125223 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACATAGTTCATTCCCAGTCTAA
21125249 GCATACATAGTTCATTCCCAGTCTAA
1 GCATACATAGTTCATTCCCAGTCTAA
21125275 G
1 G
21125276 ATCGGATCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (26 bp):
GCATACATAGTTCATTCCCAGTCTAA
Found at i:21126231 original size:159 final size:159
Alignment explanation
Indices: 21125953--21126320 Score: 486
Period size: 159 Copynumber: 2.3 Consensus size: 159
21125943 GTTGGCATAA
* * ** * *
21125953 GCATATGGAGTTCATTCCCAGTCTAAGATTAGACCGGA-TCGAGGGTTACGATAGCAGGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACT-GAGGGTTGCGATAGCAGGATCGAC
* * * **
21126017 AGCACACATTGGGGGACCTAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
65 AGCACACATAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCACAACTCTGGCCGACTGAGCG
*
21126082 CCTGCACGCTCGTTTCATGGGTTGACTTAG
130 CCCGCACGCTCGTTTCATGGGTTGACTTAG
* * * * *
21126112 GCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCAAACTAAGGGTTGTGGTAGCAGGATCGATA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGATAGCAGGATCGACA
* * * * *
21126177 GCACGCATAGGGGGACCCCGTCGATCCCCGGCTTGCGCATTCCACAACTCTGGCCGGCTGAGTGC
66 GCACACATAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCACAACTCTGGCCGACTGAGCGC
*
21126242 CCGCACGCTTGTTTCATGGGTTGACTTAG
131 CCGCACGCTCGTTTCATGGGTTGACTTAG
* * *
21126271 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCG
21126321 GCAGCACATG
Statistics
Matches: 179, Mismatches: 29, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
159 178 0.99
160 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.23
Consensus pattern (159 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTGCGATAGCAGGATCGACA
GCACACATAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCACAACTCTGGCCGACTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAG
Found at i:21126394 original size:11 final size:11
Alignment explanation
Indices: 21126378--21126410 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
21126368 GTCGAGGCAC
21126378 CATCGTCGGAG
1 CATCGTCGGAG
21126389 CATCGTCGGAG
1 CATCGTCGGAG
*
21126400 CATCGCCGGAG
1 CATCGTCGGAG
21126411 AACCTGACCG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.30, G:0.36, T:0.15
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:21127812 original size:871 final size:873
Alignment explanation
Indices: 21126088--21132513 Score: 7475
Period size: 902 Copynumber: 7.2 Consensus size: 873
21126078 AGCGCCTGCA
* * * * ** *
21126088 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCGTTCCCAGTCTAAGATCAGACCAAACTA
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
* * * * *
21126153 AGGGTTGTGGTAGCAGGATCGATAGCACGCATAGGGGGACCCCGTCGATCCCCGGCTTGCGCATT
66 AGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
* ** * * *
21126218 CCACAACTCTGGCCGGCTGAGTGCCCGCACGCTT-GTTTCATGGGTTGACTTAGGCATACGGAGT
131 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTCATTTCGTGGGTTGACTTAGGCATACGGAGT
* * *
21126282 TCATTCCCAGTCTAAGATCGGATCAAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
196 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGT
* * * *
21126347 GCTAGTGCCACATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCGTCGGAGCATCGCCGGAGA
261 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC---G---C--CGGAGCATCGTCGGAGA
* * *
21126412 ACCTGACCGACGGCATTGGGGTTCCGGTGATCGGGGGGGCCCGAGGGGT-TGCGCACATGATGTA
315 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTG
*
21126476 CGATGGGTGCTGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
379 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
21126541 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTCGCTGCCAGTAGCCATTAAAGTGTCAGAAAT
444 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
21126606 GGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTCAGCTGAATTGTTTTG
509 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
21126671 TGCATGACAACAAAAATACAAGGATCACCTCTACCAAGTTTGGGACCAAAAATCTTTTCGAAGAA
574 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
21126736 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTT
639 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
21126801 GCCATGAAACTTCACGGGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAGTGGCA
704 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* ** * * * *
21126866 TTCGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATGCACGACTTGTG
769 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
21126931 CATACCGTCTCTCTGGCCGGCGTAGTGCCCGCTTGCCCACC
834 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-CGCCCACC
* * **
21126972 CACTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
* * * * *
21127037 AGGGTTACGGTAGTAGGATCGATAGCACGCAAAGGGGGACCCGGTCGATCCCCGGCCTGCGCATC
66 AGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
* *
21127102 CCGCCCCTCTGGCCAGCTGAGCGCCCGCACG-TTCATTTCGTGGGTTGACTTATGCATACGGAGT
131 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTCATTTCGTGGGTTGACTTAGGCATACGGAGT
** * * * * *
21127166 TGTTTCCAAGTCTAAGATCGGACCGGACTGAGGGTTACAGCAGCACATGCTGTGCTCGGGCATGT
196 TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGT
* * **
21127231 CCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGAC
261 GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGAC
* * * *
21127296 GGCGTTGGGGTTCCGGTGATCGGGGGGGCC-GGGGGTGTGCGCAGATGATGTGCAATGGGTGCTG
326 GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
21127360 GTACTTGGCCCTT-TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAA
391 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * * *
21127424 AGCATTTGAGATTTTACAGGTTTGCTACCAATTGCCATTAAAGTGTCTGAAATGGGGGCACTTCT
456 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * *
21127489 TTCAAACGGTCACAAAATCTTATACAC-TCTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
521 TTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
21127553 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
585 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
** * * *
21127618 TCCCGAACCAAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACT
650 TCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
21127683 TCACGTGAAGGCTTAAGGGACCATTGCATGAGTTTACAAGCCATAAAAATGGCATTGGCATGCAG
715 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
21127748 AAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCATGGCTTGCACGTCCCGTCTC
780 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
21127813 TCTGCCCGGCGTAGTG--C-CCGCCC-GC
845 TCTGGCCGGCGTAGTGCCCGCCGCCCACC
* *
21127838 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTACATTCCCAGTCTAAGATCAGACCAGACTG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
* * * *
21127903 AGGGTTGCGGCAACAGGATCGACAGCACGAAGAGGGGGACCTGGTCGATCCCCGGCTTGCGCATC
66 AGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
* * * * *
21127968 CTGCCCCTCTGGTCGGCTGAGCGCCCGCATGC-TCGTTTCATGGGTTGACTTAGGCATACGGAGT
131 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTCATTTCGTGGGTTGACTTAGGCATACGGAGT
**
21128032 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAACATCAGACTGGACTGAGGGTTGTG
196 TCATTCCCAGTCTAAG-AT-C---G----------G----AC--CAGAC----C-GAGGGTTGCA
* *
21128097 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCG
235 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCG
* * * ** *
21128162 GAGCATCGTCGGAGAACCTGACAGGCGGCATTGGGGTTTCAACGATCAGGGGGGCCGGGGGGTGT
300 GAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGT
* *
21128227 GCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAA
365 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
21128292 CCTTGAG-ACATCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
430 CCTCGAGAAC-TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
21128356 TAAAGTGTCTGAAATGGGTACACTTTTTTCAAATGGTCTCAAAATCTTGTACACTTCGAGTTTTT
494 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
**
21128421 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTTGGGGCCAAA
559 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
* * * ** * *
21128486 ACTCCTTCTGAAAAAATTATAAAAAATCCAGAACCACAAAAAGTTTCAAAAATCATGAAAAATAG
624 ACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAG
* * ** ** *
21128551 AAAACGAGTTGTCCTGCCATGAAACTTCACGTGAAGGCTTAA-ACAATATTATATGAATTTACAA
689 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* *
21128615 GCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATC
754 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
21128680 GATCCACGGCATGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCAACC
819 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG--C-CC-ACC
* * * * ** *
21128740 CACTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGAACAGACTAGACCG
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
* * ** * * * *
21128805 AGGGTTGTGGTAGCAGGATTGGTAGCACGCAGAGGGGGACCCGGTTGATCCCCGACTAGTGCATC
66 AGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
* * * * *
21128870 CTGCCCCTCTAGCCGGCTGAGTGCCCGCACGCTT-GTTTCATGGGTTGACTTAGGCATACGGAGT
131 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTCATTTCGTGGGTTGACTTAGGCATAC-G-G-
21128934 TCATTCCCAGTCTAAGCATACCGAGCTCATTCCTAGTCTAAGATCGGACCAGACCGAGGGTTGC-
193 --------AGT-T---CAT-------TC---CC-AGTCTAAGATCGGACCAGACCGAGGGTTGCA
* ** * *
21128998 GACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCACA
235 G-CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC
* * * ** **
21129063 GGAGCATCGTCGGAGAACCTGACCGGCAGCATTAGGGTTTTGGCGATCGGAAGGGCCGGGGGGTG
299 GGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTG
*
21129128 TGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
364 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
21129193 ACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTCTGCTGCCAGTAGCCAT
429 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
21129258 TAAAGTGT-TCGAAATGAGGACACTTATTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
494 TAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
21129322 TAGCTGAATTATTTTGTGCATGCCAACAAAAATACAACGATCACGTCTACCAAGTTTGGGGCGAA
558 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * *
21129387 AACTCTTTCCAAAAAAATTTTAAAAAAGCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATA
623 AACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATA
* * * * * *
21129452 GAAAACGAGTTGTGTTGCCATGAAACATCATGTGAAGGTTTAAAGGACCATTGTATGAATTTACA
688 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
21129517 AGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCATCCTAT
753 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* **
21129582 CGATCTACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG--C-CCGCCCGTC
818 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCACC
* *
21129635 CGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-TC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-
** * * * * * * * * *
21129699 GAGATTTGCGGCAGTAGGTTCGGCAACACGTAGAGGGGGACTCGGTCGATTCCCGGCTTACGCAT
65 GAGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCAT
* * **
21129764 CCTGCCCCTCTGGCCGACTGAGCGCCATCACGCTCGTTCCATGGGTTGACTTAGGAATACGGAGT
130 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG--C-TT-CAT---TT--C----G--T--GG-GT
* * * * * *
21129829 TCATTCTCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGACTGAGGGTTGCG
177 TGA----C--T-TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCA
* * * * * * *
21129894 GTAGTACATCCTGGGCTTGAGCATGTGCCCCAGCATCTGCCGGTGCCACATTTTTCTTCATCGGG
235 GCAGCACATGCTGGGC-T---C--G-G-----GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * ** *
21129959 GCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACAACATTGGGGTTCCGGCGATCGGAGGG
288 GCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGG
*
21130024 GCCGGGGGGTGTGCGCAAATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
353 GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
21130089 TCCATCATCACACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTA
418 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
21130154 CCAGTACCCATTAAAGTGTCTG-AATGAGGACACTTTTTTCAAATGGTCACAAAATATTGTACAC
483 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
21130218 TTTGAGTTTTTAGGTGAATTTTTTTGTCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
548 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* ** * *
21130283 TTGGGGCTAAAACTTATTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAACGTTTCGAAAATC
613 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATC
*
21130348 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
678 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * * *
21130413 TGAATTTACAGGCCATAAAAATGGCATTGGCACACAGAAATATAAAGATGTGCATGAACCCACCT
743 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
21130478 ACCACCCTATCGATCCACAGCTTACGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGACCG
808 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCG-CC-
21130543 TC-CGC
870 -CAC-C
* * *
21130548 CAGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCAGACCGGATT
1 C-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT
* * * *
21130613 GAGGGTTGCGGTAGCAGGATCCG-TAGCACGCAGAGGGGGACCCAGTCAATCCCCGGCTAGCGCA
65 GAGGGTTGCGGTAGCAGGAT-CGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
* * * * * *
21130677 TCCTGCCCCTCTAGCCGACTGAGCGCCCGTACGCTT-ATTTCATGGGTTGACTTAGGCATAAGGA
129 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTCATTTCGTGGGTTGACTTAGGCATACGGA
* *
21130741 GTTCATTCCCAGTCT-A-A---G--CATACCGA--GTT---------CAT--T---C-C---TA-
194 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCAT
* * * * **
21130778 GT-CTAAGATGCCGTATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
259 GTGCT--GGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC
* * * *
21130842 TGACGGCATTGGGGTTCCAGCGATCGAGGGGGCCGGAGGGAGTGTGTGCACATGATGTGCGATGG
322 CGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGG-GGG-GTGTGCGCACATGATGTGCGATGG
*
21130907 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
385 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
21130972 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAAGGGGGAC
450 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
21131037 ATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATG
515 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
21131102 CC-ACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTA
580 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
21131166 CAAAATCCTGAACCGTAAAAAGTTTCGCAAATCGTGAAAAATAGAAAACGAGTGGTCTTGCCATG
645 AAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * *
21131231 AAACTTCCCGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGCCACTGGCA
710 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
21131296 CACAGAAATATCAAGATGTGCCTGAACCTACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
775 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
21131361 GTCTCCCTGGCCGGCGTAGTGCCCGTCGGACCGCC
840 GTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCCACC
* **
21131396 GGCTTGCTCATTTAATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
1 --C--GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGG
* * * ** * *
21131461 ACCGAGGGTTAC-G-ACGTAGGATCGACAGCACGCAGAGGGGGACGTGGCCGA-CCCTGGCTTGC
62 ACTGAGGGTTGCGGTA-GCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGC
* * ** * * *
21131523 GCATCCCGCCCTTCTGGTCGGCTGAGTTCCTGCACGC-TCGTTTCGTGGGTTGACTTAGACATAC
126 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTCATTTCGTGGGTTGACTTAGGCATAC
* *
21131587 TGAGTTCATTCCCAGTCTAAGCATACATAGTTCATTCTAGTCTAAGTTAGGACGGGACCGAGGGT
191 GGAGTTCATTCCCAGTCTAAG-AT-C---G--GA--C----C---------A---GACCGAGGGT
* * *
21131652 TGCAACAGCACATGCTAGGCTCGGGCATCTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
231 TGCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC
* * * * ** *
21131717 ACCGGAGCATCGTCGGAGAACCTGACTGGCGGCATTTGGGTTCCGATGGTCGGGGGGGCCGGGGG
296 GCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGG
*
21131782 GGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
360 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
21131847 TCAAACCTCAAAAACTCACACCCCCTTCAAGAGCATTTGAGATTTTACAGGTATGCTGCCAGTAG
425 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
21131912 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
490 CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
** *
21131977 TTTTAGCTGAATTTTTTTGTGCATGCCAACATGAATACAAGGATCACGTCTACCAGGTTTGGGGC
555 TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* ** * **
21132042 CAAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACTGTAAAAAGTTTAAAAAATCGTGAAAA
620 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAA
*
21132107 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
685 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
21132172 ACAAGCCATAAAAATGGCATTGGCAATGACAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
750 ACAAGCCATAAAAATGGCATTGGC-ACG-CAGAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * * * *
21132237 CCTATCGATCCACAGCTGGCGCATCCCGTCTCTTTGGCTGGCATAGTGCCCGGCCGCCCGATCGC
813 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-GCCGCCC-A---C
21132302 C
873 C
* *
21132303 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCACAGTCTAAGATCAGACC-GAATC
1 CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-
* * * ** * *
21132367 GAGGGTTACGGTAGCAGGAT-TAGCAGTACGTGGAGGGGGACCCGGTCGATCCCCGGCTTTCACA
65 GAGGGTTGCGGTAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCA
** * * **
21132431 TCCCGCCCCTCTGGCCGGCTTGAAAGCCCTCACGC-TCGTTTCGTGGGTTGACTTCTGCATACGG
129 TCCCGCCCCTCTGGCCGGC-TGAGCGCCCGCACGCTTCATTTCGTGGGTTGACTTAGGCATACGG
21132495 AGTTCATTCCCAGTCTAAG
193 AGTTCATTCCCAGTCTAAG
21132514 CATACGTAGT
Statistics
Matches: 4760, Mismatches: 575, Indels: 392
0.83 0.10 0.07
Matches are distributed among these distances:
847 1 0.00
848 4 0.00
849 162 0.03
850 33 0.01
851 460 0.10
852 71 0.01
860 1 0.00
865 1 0.00
866 185 0.04
867 6 0.00
868 3 0.00
869 2 0.00
870 5 0.00
871 408 0.09
872 39 0.01
873 54 0.01
875 1 0.00
878 2 0.00
879 3 0.00
881 14 0.00
883 6 0.00
884 248 0.05
885 2 0.00
886 1 0.00
887 5 0.00
888 25 0.01
889 1 0.00
891 1 0.00
892 116 0.02
893 158 0.03
894 296 0.06
895 178 0.04
896 8 0.00
897 6 0.00
898 4 0.00
899 7 0.00
900 213 0.04
901 258 0.05
902 626 0.13
903 273 0.06
904 30 0.01
905 31 0.01
906 380 0.08
907 232 0.05
908 2 0.00
909 5 0.00
910 6 0.00
911 5 0.00
912 1 0.00
913 9 0.00
914 138 0.03
915 3 0.00
917 3 0.00
918 1 0.00
919 1 0.00
920 2 0.00
921 8 0.00
923 1 0.00
924 2 0.00
926 1 0.00
927 4 0.00
928 8 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (873 bp):
CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTG
AGGGTTGCGGTAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATC
CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTCATTTCGTGGGTTGACTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGGGCATGT
GCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGAC
GGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCGCCCACC
Found at i:21128051 original size:26 final size:26
Alignment explanation
Indices: 21128021--21128072 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
21128011 GTTGACTTAG
21128021 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21128047 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21128073 CATCAGACTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21128953 original size:26 final size:26
Alignment explanation
Indices: 21128923--21128975 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21128913 GTTGACTTAG
* *
21128923 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGCTCATTCCCAGTCTAA
*
21128949 GCATACCGAGCTCATTCCTAGTCTAA
1 GCATACCGAGCTCATTCCCAGTCTAA
21128975 G
1 G
21128976 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGCTCATTCCCAGTCTAA
Found at i:21129849 original size:26 final size:26
Alignment explanation
Indices: 21129820--21129870 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21129810 TGACTTAGGA
*
21129820 ATACGGAGTTCATTCTCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
21129846 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
21129871 ATTGGATCAG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:21130762 original size:26 final size:26
Alignment explanation
Indices: 21130732--21130784 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21130722 GTTGACTTAG
*
21130732 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAACGAGTTCATTCCCAGTCTAA
* *
21130758 GCATACCGAGTTCATTCCTAGTCTAA
1 GCATAACGAGTTCATTCCCAGTCTAA
21130784 G
1 G
21130785 ATGCCGTATT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATAACGAGTTCATTCCCAGTCTAA
Found at i:21132524 original size:26 final size:26
Alignment explanation
Indices: 21132487--21132539 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21132477 GTTGACTTCT
21132487 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21132513 GCATACGTAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21132539 G
1 G
21132540 TTAGGACGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21132702 original size:94 final size:94
Alignment explanation
Indices: 21132541--21132728 Score: 376
Period size: 94 Copynumber: 2.0 Consensus size: 94
21132531 CAGTCTAAGT
21132541 TAGGACGGGAGCGAGGGTTGCAACAGCACATGCTAGGCTCGGGCAGGTGCTGGTGCCGCATTTTT
1 TAGGACGGGAGCGAGGGTTGCAACAGCACATGCTAGGCTCGGGCAGGTGCTGGTGCCGCATTTTT
21132606 CTTCACCAGGGCACCATCATCAGAGCATC
66 CTTCACCAGGGCACCATCATCAGAGCATC
21132635 TAGGACGGGAGCGAGGGTTGCAACAGCACATGCTAGGCTCGGGCAGGTGCTGGTGCCGCATTTTT
1 TAGGACGGGAGCGAGGGTTGCAACAGCACATGCTAGGCTCGGGCAGGTGCTGGTGCCGCATTTTT
21132700 CTTCACCAGGGCACCATCATCAGAGCATC
66 CTTCACCAGGGCACCATCATCAGAGCATC
21132729 GTTGGAGAAC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
94 94 1.00
ACGTcount: A:0.21, C:0.27, G:0.32, T:0.20
Consensus pattern (94 bp):
TAGGACGGGAGCGAGGGTTGCAACAGCACATGCTAGGCTCGGGCAGGTGCTGGTGCCGCATTTTT
CTTCACCAGGGCACCATCATCAGAGCATC
Found at i:21135182 original size:26 final size:26
Alignment explanation
Indices: 21135153--21135205 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21135143 GATCAGGGGG
*
21135153 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21135179 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21135205 G
1 G
21135206 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21135348 original size:194 final size:194
Alignment explanation
Indices: 21134985--21135348 Score: 458
Period size: 194 Copynumber: 1.9 Consensus size: 194
21134975 GTTGAGTTAG
*
21134985 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCACATGCTAGG
* * * * * * *
21135050 CTCAGGCATTTACTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCATCGGAGA
66 CTCAAGCATGTACTGCTGCCACATTTTTATTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
*
21135115 ACCTAACCGACGGCATTGGGGTTCCGATGATCAGGGGGGCATACGGAGTTCATTCCTAGTCTAA
131 ACCTAACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCATACGGAGTTCATTCCTAGTCTAA
* * *** * * *
21135179 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCACATGCTAGG
** * **
21135244 CTCAAGCATGTGGTGCTGCCACATTTTTATTCGTCGGGGCACCATCGCCGGAGCATTGCCGGAGA
66 CTCAAGCATGTACTGCTGCCACATTTTTATTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
* * * ** * * *
21135309 ACTTGATCGGTGGCATTGGGGTTCTGGCGATCGGGGGGGC
131 ACCTAACCGACGGCATTGGGGTTCCGACGATCAGGGGGGC
21135349 CGGGAGGGGG
Statistics
Matches: 140, Mismatches: 30, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
194 140 1.00
ACGTcount: A:0.21, C:0.24, G:0.31, T:0.24
Consensus pattern (194 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCACATGCTAGG
CTCAAGCATGTACTGCTGCCACATTTTTATTCGTCGGGGCACCATCACCGGAGCATCACCGGAGA
ACCTAACCGACGGCATTGGGGTTCCGACGATCAGGGGGGCATACGGAGTTCATTCCTAGTCTAA
Found at i:21136086 original size:26 final size:26
Alignment explanation
Indices: 21136049--21136101 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21136039 GTTGACTTAG
* *
21136049 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21136075 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21136101 G
1 G
21136102 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21139191 original size:856 final size:860
Alignment explanation
Indices: 21137003--21142045 Score: 4788
Period size: 856 Copynumber: 5.8 Consensus size: 860
21136993 TTCCCAGGTT
*
21137003 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* *
21137068 AACTCACACCTCCTTAAAGAGCATTTGAGATTTTACACGTTTGCTGCCAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* ** * *
21137133 CTGAAATGTGGACATTTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAA
131 CTGAAATGGGGACA-CCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
* * * *
21137198 TTTTTTTGTGCAAGCCAA-AAAAATACAAGGATCACATCTACAAAGTTTGGGACTAAAACTCCTT
195 TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTT
* ***
21137262 CCGAAAAAATTTTAAAAAATCCCAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
260 CCGAAAAAATTTT-AAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
* *
21137327 GTCATCTTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
324 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
*
21137392 AAATGGCATTGGGACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
389 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * * * * * *
21137457 AGCTCGCGCATCGCGTCTCCCTGGCTGGCGTAGTGCCCACCC-CCTCGCCCGCTCATTCCCACTC
454 GGCTTGCGCATCCCATCTCTCTGGC-CGCATAGTGCCCACCCACC-CG--CGCTCATT-----TC
* *
21137521 TAAGATCGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCAGACCAGACCGAGGGTT
510 ---G-TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* ** * * ** *
21137586 GCGACAATAGGATCGACAGCACGTAGAAGGGGACCCAGTAGATCCCCGGCTTGTGCATCCCGCCC
571 GCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* ** * * *
21137651 CTTTGGCCGAATGAGCGCCCGTACGCACATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
636 CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCC
* ** * *
21137716 CAAG-CTAAGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGGTGCGACAGCA
701 C-AGTCTAAG-AT-C-G-G---A----C---CT--G---AGATC---T-GAGGATTACAACAGCA
* *
21137780 CATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTC-T---T-------CA---CCGGAGAAC
742 TA-GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGAAC
* ** * *
21137831 TTGACCGGCGGCATTAGGGTT-TCGGCGATCGGGGGGGCCGGGGGGGTGTGCACACA
806 CTGAAGGGCGGCATT-GGGTTCT-GGCGATCGGGGGGGCCGAGGGGGTGTGCGCACA
*
21137887 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * *
21137952 AACTCACACCCCTTTAAAGAGAATTTGAGATTTTACAGGTTTGCTGCTAATAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
21138017 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
131 CTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
*
21138082 TATTTT-TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
196 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
* * *
21138146 CGAAAAAAGTTTAAAAAATCCCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAG
261 CGAAAAAA-TTTTAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
21138211 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAA
325 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * * *
21138276 AATGGTATTGGCACGTAAAAATACGAAAATGTGCCTAAACCCACCTACCACTCTATCGATCCACG
390 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
21138341 GCTTGCACATCCCATCTCTCTGGCCGCATAGTGCCCACCCACCCG-G-TCGTTTCGTCGGTTGGC
455 GCTTGCGCATCCCATCTCTCTGGCCGCATAGTGCCCACCCACCCGCGCTCATTTCGTCGGTTGGC
* * * * * *
21138404 TTAGGCAAACGGGGTTCATTCCTAGTCAAAGATCAGACCAGACTGAGGGTTGCGGTAGCAAGATC
520 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATC
* * * * *
21138469 GACAGCACGTAGAGGGGGACTCGGCTGATCCCCGGGTTGCGCATCCCGCCCATCTGGCCGGTTGA
585 GACAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
*
21138534 GCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGG
650 GCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGG
* *
21138599 ACC-G-GA-CTGAGGATTACAACAGCATGAGCCGGGCTCGGGCATGTGCTGGTGCCACATTTTTC
715 ACCTGAGATCTGAGGATTACAACAGCAT-AGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* ** * * *
21138661 TTCGCTGGGGC-CCATCATCGGAGAACCTGAAGGGCGGTATTCGGGTTCTGGCGATCGAGGAGGC
779 TTCACTGGGGCACCATCGCCGGAGAACCTGAAGGGCGGCATT-GGGTTCTGGCGATCGGGGGGGC
*
21138725 CGATGGGGTGTGCGCACA
843 CGAGGGGGTGTGCGCACA
* ** * **
21138743 TGATGTGTGATGGGCACTGGTGCTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
21138808 AACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * *
21138872 CTAAAATGGGGACACCTTTTTCAAATGGTCATAAAATCTTGTACACTTCGTGTTTTTAGCTGAAT
131 CTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
21138937 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCTTTC
196 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * *
21139002 CAAAAAAATTTTCAAAAATACCGAACCACAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAG
261 CGAAAAAATTTT-AAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
21139067 TCGTCTTGCCATGAAACTTCACGTGAAGACTTAAGGGACCATTGTATGAATTTACAAGCTATAAA
325 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
21139132 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACG
390 AATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
21139197 GCTTACGCATCCCACCTCTCTGGCCG-ATGTACTACCCGCCCGCCCGTCTGCCCTCTCATTTCGT
455 GCTTGCGCATCCCATCTCTCTGGCCGCA--TAGTGCCCACCCACCCG-C-G----CTCATTTCGT
** ** *
21139261 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATAAGACTGAGGGTTGTGGCA
512 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
* * * * * * * ** *
21139326 GTAGGATCGGCAGCACGCAGAGGGGGACCC-ACCGATCCTCGACTTACGCATCCAACCCCTC-GT
577 GCAGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
21139389 CCGACTGAGCGCCCGCACGCTCGTTTC-T-GG-TGACATAGG-ATACTGGAGTT-A-TGCCAGTC
642 CCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATA-TGGAGTTCATTCCCAGT-
** ** * *
21139448 AAACCATAGAGATCGTTCCTTGTCTAGATCTCGACGCGAGGGA-AGCAGCCCAT-GCTAGGCTCG
705 ----C-TA-AGATCGGACC-TG---AGATCT-GA-G-GA-TTACAACAG--CATAGCTGGGCTCG
* ** *
21139511 GGCATGTGCTGTTGTGCC-CA-TTTTCTT-ATTGGGGCACCATCTTC--AGAA-CTGACTGGGCG
754 GGCATGTGCTG--GTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGAACCTGA-AGGGCG
* * * ** *
21139570 ACA-TGGGTTC-CGAGATCGGTGGAATGCTCTAGGGGGTGTG-GCACA
816 GCATTGGGTTCTGGCGATCGG-GG-GGGC-CGAGGGGGTGTGCGCACA
*
21139615 TGATGTGC-ATAGGGGTGC-AGTA-TTGG-CCTTATA-TGG--CCCTAT-CC-CATC-AACACTC
1 TGATGTGCGAT--GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC-CTC
* * *
21139670 GTA-AACTCA-A-CCTCTTAAAGACCA-TTGAGATTTTCCAGG-TTGCT-CCA-TAGCCATTAAA
63 G-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
21139728 GTGTC-GAAAT--GGACA-CTTTTT-AAATGGTCAC--AATCTTGTACA-TTCGAGTTTTTAGCT
127 GTGTCTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
21139785 -AGTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG---------
192 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTC
*
21139840 ---CC--------------AA-----AACC-C------TTTCAAAAATCATGAAAAATAGAAAAT
257 CTTCCGAAAAAATTTTAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
* * * * *
21139876 GAGTCATCTCGCAATGAAACTTCACGTGAAGGCCTAAGGGACCATTGTATGTATTTACAAGCCAT
322 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * *
21139941 AAAAATGGCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCC
387 AAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * * * * * **
21140006 ATGGCTTGCGCATCTCGTCTCTCTGGCCGATATAGTGCCCGCCCTTCCAC-CGGCTTGTTTCGTC
452 ACGGCTTGCGCATCCCATCTCTCTGGCCG-CATAGTGCCCACCC-ACC-CGC-GCTCATTTCGTC
* * ** * * *
21140070 GGTTGGCTTAGGCCTACAGAGTTCATTCCCCA-TCTAAGATTGGATCAGACTGAGGGTTGTGGTA
513 GGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
* * * *** * *
21140134 GCAGGATC-AGCAGGACGAAGAGGGGGACCTGGCCGATCCCCAAATTACGCATCCCTCCCCTCTG
577 GCAGGATCGA-CAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * **
21140198 GCCGGCTCAGCGCCCGCACGCCCGTTTCATGGGTTGACTTAGGCATGCGGAGTTCATTCCCAGTC
641 GCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
* ** * * ** * *
21140263 TAAGATCAGACC-G-GA-CCAAGGGTTCCGGCAGCACATGCTGCGCTCGGGCATGTGCTGGTGCC
706 TAAGATCGGACCTGAGATCTGAGGATTACAACAGCATA-GCTGGGCTCGGGCATGTGCTGGTGCC
* * ** * ** * * **
21140325 GTATTTTTCTTCGCCAGGGCGCCATCGCCGGAAGAACCTGCACCGACGGCATTTGGGTTCCGATG
770 GCATTTTTCTTCACTGGGGCACCATCGCCGG-AGAACCTG-AAGGGCGGCA-TTGGGTTCTGGCG
* *
21140390 ATTGGGGGGGCCGGGAGGGGTGTTGCGCACA
832 ATCGGGGGGGCCGAG-GGGGTG-TGCGCACA
* *
21140421 TGATGGTGCGATGGGTGCTGGTAACCTTGGCGCTTATATTGGCCCCCCTATCCCTCA-CCAACCT
1 TGAT-GTGCGATGGGTGCTGGT-A-CTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACC-
* * * * *
21140485 TGGAAAAGATTC-CATACCCTTTAAAGAGGCATTTGAGA-TTTACAGGTTTGGCTTGCCAGTAGC
61 TCG-AGA-ACTCACA-CCCCCTTAAAGA-GCATTTGAGATTTTACAGGTTT-GC-TGCCAGTAGC
*
21140548 CATTAAAGTGTCCTGAAATGGGAACA-CTTTATTCAAAT-GTCACAAAATCTTGTACACTTCGAG
120 CATTAAAGTGT-CTGAAATGGGGACACCTTT-TTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * *
21140611 TTTTTAGCTG-ATTGTTTTGTGCA-GCCCAA-AAGAAATACTAGGATCACATCTACCAAGTTTTG
183 TTTTTAGCTGAATTTTTTTGTGCATG-CCAACAA-AAATACAAGGATCACATCTACCAAGTTTGG
* * * * ** * *
21140673 GGCCAAAA-TACCTTCCGATAGAA-TTTAAAATTCCCAAACCGTAAAAAGTTTCCAAAATCGTGA
246 GGCCAAAACT-CCTTCCGAAAAAATTTTAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGA
*
21140736 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAA
310 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
21140801 TTTACAAGCCATTAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCA
375 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * * * * * *
21140866 CCCTATCGATCGATGCCTTGTGCATCCCATCTCTCTGGCCGGCGTAGTGCCGGCCCGCCCGTCCA
440 CCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCC-GCATAGT----GCCCACCC-ACC-
* ** * *
21140931 CTCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC
498 CGCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * *
21140996 CGAGGGTTGTGGTAGCGGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCA
563 TGAGGGTTGCGGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCA
* * * * * *
21141061 TCCTGCCCCTCTGGCCGGCTAAGCGCCCGCATGTTCATTTCGTGGGTTGACTTAAGCATTTGGAG
628 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAG
* *
21141126 TTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGACCGAAACGAGGGTTAC
693 TTCATTCCCAGTCTAAG---ATCG-G---A--CCT-G----AGATCTGA--G----GA---TTAC
** *
21141191 GAA-AGCACATA-CTGGGCTCGGGCATACGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCG
735 -AACAG--CATAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCG
* * * * * * *
21141254 CCAGAGCATCGCTGGGGAACTTGACCGGTGG-AGTTGGGGCTCTGACCATCGGGGGGGCCGGGGG
797 CCGGAG-AAC-CT---GAA---G---GGCGGCA-TT-GGGTTCTGGCGATCGGGGGGGCCGAGGG
21141318 GGTGTGCGCACA
849 GGTGTGCGCACA
*
21141330 TGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
1 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * * *
21141395 AACTCACACTCCCTTAAAGAGCATTTAAGATTTTAAAGGTTTGCTGCCAGTAGCCGTTAAAGTGT
66 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
21141460 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAT
131 CTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * * * *
21141525 TTTTTTCTGCATGCCAACAAAAATACAAGGATCACGTCCACCAACATAT-GGGCCAAAAATCCTT
196 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAA-GTTTGGGGCCAAAACTCCTT
* * *
21141589 TCGAAAAAATTTTACAAAATCTCGAACCGA-AAAAAGTTTCAAAAATCATAAAAAATAGAAAACG
260 CCGAAAAAATTTTA-AAAATCCCGAACC-ACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG
*
21141653 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATA
323 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
** *
21141718 AAAATCACATTGGCACCCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
388 AAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * *
21141783 CGGCTTGCGCATGCCGTCTCTCTGGCCAGCGTAGTGCCCACCCGCCCGGCCGCCCGCTCATTTCG
453 CGGCTTGCGCATCCCATCTCTCTGGCC-GCATAGTGCCCA-CC-CAC--CCG--CGCTCATTTCG
** * ** * **
21141848 TTTGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATTGGACC-GATTGAGGGTTGCACC
511 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGC
* * * * *
21141912 AGCAGGATCGACACCACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGTGCATCTCGCCCCTCTG
576 AGCAGGATCGACAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * *
21141977 GCCGGATGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTC
641 GCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTC
21142042 TAAG
706 TAAG
21142046 CATATGGAGT
Statistics
Matches: 3471, Mismatches: 449, Indels: 459
0.79 0.10 0.10
Matches are distributed among these distances:
796 7 0.00
797 1 0.00
798 31 0.01
799 11 0.00
800 1 0.00
801 1 0.00
802 6 0.00
803 10 0.00
804 9 0.00
805 11 0.00
806 21 0.01
807 6 0.00
808 98 0.03
809 31 0.01
810 30 0.01
811 7 0.00
812 185 0.05
813 16 0.00
814 5 0.00
815 12 0.00
816 4 0.00
817 8 0.00
818 2 0.00
819 8 0.00
821 9 0.00
822 9 0.00
823 8 0.00
824 4 0.00
825 1 0.00
826 3 0.00
827 15 0.00
828 1 0.00
829 5 0.00
831 8 0.00
832 7 0.00
833 4 0.00
834 14 0.00
835 59 0.02
839 2 0.00
843 44 0.01
844 3 0.00
847 4 0.00
848 2 0.00
851 54 0.02
852 15 0.00
853 13 0.00
855 95 0.03
856 410 0.12
857 19 0.01
858 7 0.00
859 8 0.00
860 33 0.01
861 9 0.00
862 15 0.00
863 38 0.01
864 28 0.01
865 115 0.03
866 4 0.00
867 8 0.00
868 4 0.00
869 173 0.05
870 14 0.00
871 14 0.00
872 194 0.06
873 29 0.01
874 7 0.00
875 43 0.01
876 193 0.06
877 10 0.00
878 4 0.00
879 3 0.00
880 1 0.00
882 25 0.01
883 292 0.08
884 138 0.04
885 2 0.00
887 1 0.00
892 2 0.00
893 2 0.00
895 1 0.00
899 1 0.00
900 24 0.01
901 62 0.02
902 123 0.04
903 163 0.05
904 251 0.07
905 17 0.00
906 22 0.01
907 1 0.00
908 16 0.00
909 12 0.00
910 9 0.00
911 24 0.01
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (860 bp):
TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
CTGAAATGGGGACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
TTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
CGAAAAAATTTTAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
CTTGCGCATCCCATCTCTCTGGCCGCATAGTGCCCACCCACCCGCGCTCATTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCG
ACAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGA
CCTGAGATCTGAGGATTACAACAGCATAGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
CACTGGGGCACCATCGCCGGAGAACCTGAAGGGCGGCATTGGGTTCTGGCGATCGGGGGGGCCGA
GGGGGTGTGCGCACA
Found at i:21141142 original size:26 final size:26
Alignment explanation
Indices: 21141113--21141168 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
21141103 TGGGTTGACT
*
21141113 TAAGCATTTGGAGTTCATTCCCAGTC
1 TAAGCATATGGAGTTCATTCCCAGTC
*
21141139 TAAGCATATGGAGTTCATTCCTAGTC
1 TAAGCATATGGAGTTCATTCCCAGTC
21141165 TAAG
1 TAAG
21141169 ATCGGACCGA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.34
Consensus pattern (26 bp):
TAAGCATATGGAGTTCATTCCCAGTC
Found at i:21142055 original size:26 final size:26
Alignment explanation
Indices: 21142019--21142071 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21142009 GTTGACTTAG
* *
21142019 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
21142045 GCATATGGAGTTCATTCCCAATCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
21142071 G
1 G
21142072 ATTGGACCAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:21142187 original size:185 final size:184
Alignment explanation
Indices: 21141861--21142257 Score: 544
Period size: 185 Copynumber: 2.2 Consensus size: 184
21141851 GTTGGCTTAG
* * ***
21141861 GCATACGGAGTTCATTTCCAGTCTAAGATTGGACCGATTGAGGGTTGCACCAGCAGGATCGACAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCCACCAAGGGTTGCACCAGCAGGATCGACAC
** * ** * *
21141926 CACGCAGAGGGGGACCCGGCTGATCCCCGGCTTGTGCATCTCGCCCCTCTGGCCGGATGAGCGCC
66 CACGCAGAGGGGGACCCAACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGATGAGCGCC
* * *
21141991 CGTACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCTAGTCTAA
131 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ***
21142045 GCATATGGAGTTCATTCCCAATCTAAGATTGGACCACACCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACC-CACCAAGGGTTGCACCAGCAGGATCGACA
* * * *
21142110 GCATGCAGAGGGGGACCCAACCGATCCTCGGCTTACGCATCCCACCCCTCTGGTC-GACTGAGCG
65 CCACGCAGAGGGGGACCCAACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGA-TGAGCG
*
21142174 CCCGCAGGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
21142230 GCATACGGAGTTCATTCCCAGTCTAAGA
1 GCATACGGAGTTCATTCCCAGTCTAAGA
21142258 ACAGACCGGA
Statistics
Matches: 184, Mismatches: 27, Indels: 3
0.86 0.13 0.01
Matches are distributed among these distances:
184 34 0.18
185 150 0.82
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCCACCAAGGGTTGCACCAGCAGGATCGACAC
CACGCAGAGGGGGACCCAACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGATGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:21142240 original size:26 final size:26
Alignment explanation
Indices: 21142204--21142256 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21142194 GTTGACTTAG
21142204 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21142230 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21142256 G
1 G
21142257 AACAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21144044 original size:26 final size:26
Alignment explanation
Indices: 21144014--21144066 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21144004 GTTGACTTAG
**
21144014 GCATACGAAGTTCATTTTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21144040 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21144066 G
1 G
21144067 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21144224 original size:906 final size:901
Alignment explanation
Indices: 21142045--21146464 Score: 5295
Period size: 904 Copynumber: 5.0 Consensus size: 901
21142035 CCTAGTCTAA
* * ** * * * *
21142045 GCATATGGAGTTCATTCCCAATCTAAGATTGGACCACACCAAGGGTTGCGGTAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * * * * *
21142110 GCATGCAGAGGGGGACCCAACCGATCCTCGGCTTACGCATCCCACCCCTCTGGTCGACTGAGCGC
66 GCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
* *
21142175 CCGCAGGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * **
21142240 TTCATTCCCAGTCTAAGAACAGACCGGACCGAGGGATGCGGCAGCACATATTGGGCTCGGGCATG
196 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
21142305 TGTTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGACCGA
261 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGA
** ** * * *
21142370 CGGCATTGGGGTTATGGGGATCGGGGGGGCCGAGGGGGGTGTGCACACGTGATGTGTGATGGGTG
326 CGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
21142435 CTGGTACTTGGCCCTTATTTTGGCTCCCTATCCCTCATCAAACCTTGAGAACTGACACCCCCTTA
390 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
21142500 AAGAGAATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTT-AAATGTGGACAG
455 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TTGAAATGGGGACAC
* *
21142564 TTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCACT-C
519 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA-TGC
* *
21142628 CAACAAAAATACAAGGATCACGTCTTCCAAGTTTGGGGCCAAAACGCCTTCTGAAAAAATTTTAA
583 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAA
* ** * * *
21142693 AAAATCCCGAACAGAAAAAATTTTGAAAATTGTG----ATAGAAAATGAGTCGTCTTGCAATGAA
647 AAAATCCCGAAC-GAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
21142754 ACTTCACGTGAAGGCTTTAGTGCCCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATG
711 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* * * *
21142819 CAAAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGT
776 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* *
21142884 CTCTCTGGCCGACGCAGTGCCCGCCCGCCCACCCGCCCACTCGCTCGTTTCATCGATTGGCTTAG
841 CTCTCTGGCCG-CGTAGTGCCCGCCCG-CCACCTGCCC-C-CGCTCGTTTCATCGATTGGCTTAG
* **
21142949 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
21143014 GCACGTAGAGGGGGAACC-AGCCGATCCCCAACTTGCACATCCTGCCCCTCTGGCCGACTGAGCG
66 GCACGTAGAGGGGGACCCGA-TCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * * ** *
21143078 CCCACACGTTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCGGTCTAAGCATACGGA
130 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * ** * * * * *
21143143 GTTCATTCCCAGTCAAAGATCGGA-TCAGATTGAAGGTTGCAGTAGTACATACTGGGCAT-GGGC
195 GTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGC-TCGGGC
* * *
21143206 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGAC
258 ATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGAC
* ** * * *
21143271 CGGCATCATTGGGGTTCCGACGATCGGGGGGACTGGGTGGGTGTGCGCACATGATGTGCGATGGG
323 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
21143336 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCTCCT
388 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
21143401 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGATA
453 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
*
21143466 CTTTTTTCAAATAGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
518 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
** * * *
21143531 CAACAAAAATACATTGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTTCGAAAAATTTTTAA
583 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAA
* * * *
21143596 AAAATCCCAAATCGTAAAACGTTTCAAAAATCGTGAAAAATAGAAAGCAAGTCGTCTTGCCATGA
647 AAAATCCCGAA-CG-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * * * *
21143661 AACTTCACATGAAGGCTTAAGAGACCAGTGTCTGAATTTAGAAGCCATAAAAATGGCATTGGCAT
710 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
21143726 GCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTG
775 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
21143791 TCTCTCTGGCCGCCGTAGTG-CCGCCCGCCAGCCTGCCCCTCGCTTGTTTAATCGGTTGGCTTAG
840 TCTCTCTGGCCG-CGTAGTGCCCGCCCGCCA-CCTGCCCC-CGCTCGTTTCATCGATTGGCTTAG
* * * ** * * * *
21143855 GCATACGGAGTTCAATCCTAGTCTAAGAGT-GGACTGGATCGAGGGTTGCGGTAGTAGGATCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * * *
21143919 AGCACATAGAAGGGGACCTGATCGATCCTCGGCTTGCGCATCCCGCCCCTCTGACCGGCTGAGTG
65 AGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * ** *
21143984 CCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGAAGTTCATTTTCAGTCTAAGCATACGAA
130 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*
21144049 GTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
195 GTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
*
21144114 GTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCG
260 GTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCG
* * * *
21144179 ACGGCACTGAGGCTCCGACGATC-GGGGGGCCGGGGGGGATGTGCGCACATGATGTGCGATGGGA
325 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGT
* * * * *
21144243 GCTGGTACTT-GACCTTATATTGACCCACTAT-CCTCATCTAACCTTGAGAACTCACACCCCCTT
389 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
21144306 AAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT-AAATGGGGACA
454 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-TTGAAATGGGGACA
*
21144370 CTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
518 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * * ** * *
21144435 CAAAAAAAATACAAGCATTAAGTCTACCAAGTTTATGGCAAAAAATCCTTCTGAAAAAATTTTAA
583 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-GAAAAAATTTTAA
*
21144500 GAAAT-CC---C---AAA----C------C--G-----T--AAAA--A---GT-TT--CA--AAA
647 AAAATCCCGAACGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * *
21144529 -ATCA--TGAAGGCTTAAGGGACCATTTTATGAAATTACAAGCCATAAAAATGGCATTGGCACGT
712 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
* *
21144591 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTACGCATCCCGTC
777 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * * *
21144656 TCTCTGGTCGGCATAGTGCCCGCCCG-C-CC-G--CCCGCTCGTTTCGTTGATAGGCTTAG
842 TCTCTGG-CCGCGTAGTGCCCGCCCGCCACCTGCCCCCGCTCGTTTCATCGATTGGCTTAG
* ** ** * * * * *
21144712 GCCTATTGAGTTCATTCCCAGTCTAAGATCAGATCC-GATTGAGGGTTGTGACAGCAAGATTGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CCAGACCGAGGGTTGCGGCAGCAGGATCGGC
* * ** * * ** *
21144776 AGCACGTAGAGGGGGACCCGATTGATCCCTGACTTATGCATCCCGCCCATCTGGCTGGTTGAGCA
65 AGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * * *
21144841 CCCGTACGTTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATACGGA
130 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*** *** * *
21144906 GTTCATTCCCAGTCTAAGATCGGACCACACCGAGGGTTATTGCAGCACATGCTAGGCTCGGGCAA
195 GTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * *
21144971 GTGCTGGTGCCGTATTTTTCTTC-CTCGGGGCACCATCG-CTTGAGAATCATCGAAGAACCTAAC
260 GTGCTGGTGCCGCATTTTTCTTCGC-CGGGGCACCATCGTC-GGAGCATCATCGGAGAACCTGAC
** ** *
21145034 CGGTGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
323 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
21145099 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
388 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
21145164 TAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCCTTAAAGTGTTTGAAATGGGGACA
453 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
*
21145229 CTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
518 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
21145294 CAA-AAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAGAATTTTAA
583 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAA-AATTTTAA
*
21145358 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
647 AAAATCCCGAA-CG-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
21145423 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAGGCCATAAAAATGGCATTGGCAC
710 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
** *
21145488 GTAGAAATATGAATTTGTGCCT-AACCCACCTACCACCCTATCGATCCACGGCTGGCGCATCCCG
775 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * *
21145552 TCTCTCTAGCCAGCGTAGTGCCCGGCCGCCCGCCCT-CACGCCAGCTCATTTCATCGGTTGGCTT
840 TCTCTCTGGCC-GCGTAGTGCCCGCCCG-CC-ACCTGC-C-CCCGCTCGTTTCATCGATTGGCTT
21145616 AG
900 AG
* * * ** *
21145618 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGCAACAGTAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * **
21145683 GCACATAGATGGGGACCCGGTCGATCCCCGACTTGCGCATCCCG--CCAAT------CT-A----
66 GCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
* * *
21145735 ---CATGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAG
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * *
21145797 TTCATTCCCAGTCTAAGATCGGAGTGGATCGAGGGTTGCGGCAGCACATGCTTGGCTTGGGCATG
196 TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
*
21145862 TGCTGGT-CCGCATTTTTCTTCACCGGGGCACCA---TC---G---CA--GGAGAACCTGACCTG
261 TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACC-G
* * * *
21145915 ACGGCATTGGGGTTCC-AGCGATCGGGGGGGTCGGAAGGGGTGTGCACACATGATGTGCGATAGG
325 ACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGTGCGATGGG
** *
21145979 TGCTGGTACTTGGCCCTTATATTGGCCTGCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
388 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
21146044 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
453 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
21146109 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
518 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
21146174 CAACAAAAATACAAGGATCATGTCTATCAAGTTTGGGGCCAAAACTCCTTTCAAAAAAATTTTAA
583 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATTTTAA
** ** * *
21146239 AAAAT-CTTAATCGCAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTCGTCATGCCATGA
647 AAAATCCCGAA-CG-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
21146303 AACTTCACGTGAAGGCTTAAGGGACCTTTTTTTATGAATTTACAAGCCATAAAAATGGCATTGGC
710 AACTTCACGTGAAGGCTTAAGGGACC--ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
21146368 ATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGTGCATCC
773 ATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
21146433 CGTCTCTCTGGCCTGCGTAGTGCTCGCCCGCC
838 CGTCTCTCTGGCC-GCGTAGTGCCCGCCCGCC
21146465 CATCCGCTTA
Statistics
Matches: 3021, Mismatches: 402, Indels: 208
0.83 0.11 0.06
Matches are distributed among these distances:
856 3 0.00
857 334 0.11
858 90 0.03
859 155 0.05
860 1 0.00
861 2 0.00
863 125 0.04
864 9 0.00
865 3 0.00
866 3 0.00
867 3 0.00
868 2 0.00
870 2 0.00
871 3 0.00
874 1 0.00
876 3 0.00
877 1 0.00
878 12 0.00
879 30 0.01
880 296 0.10
881 54 0.02
882 64 0.02
883 65 0.02
884 1 0.00
885 1 0.00
886 4 0.00
887 1 0.00
888 1 0.00
889 23 0.01
890 117 0.04
891 3 0.00
892 2 0.00
894 2 0.00
895 2 0.00
896 3 0.00
897 5 0.00
898 62 0.02
899 74 0.02
900 1 0.00
902 5 0.00
903 273 0.09
904 522 0.17
905 36 0.01
906 450 0.15
907 16 0.01
908 156 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCA
GCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
TGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTTTAAAAAA
TCCCGAACGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTC
ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAA
ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTC
TGGCCGCGTAGTGCCCGCCCGCCACCTGCCCCCGCTCGTTTCATCGATTGGCTTAG
Found at i:21144903 original size:26 final size:26
Alignment explanation
Indices: 21144872--21144922 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
21144862 TTGACTTAGG
21144872 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
21144898 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
21144923 GATCGGACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:21145791 original size:26 final size:26
Alignment explanation
Indices: 21145761--21145813 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21145751 GTTGACTTAG
21145761 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
21145787 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21145813 G
1 G
21145814 ATCGGAGTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21146786 original size:25 final size:26
Alignment explanation
Indices: 21146735--21146786 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21146725 GTTGACTTAG
*
21146735 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21146761 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21146786 G
1 G
21146787 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21147946 original size:57 final size:57
Alignment explanation
Indices: 21147858--21148439 Score: 794
Period size: 57 Copynumber: 10.0 Consensus size: 57
21147848 TCTTGTGTGG
* *
21147858 GGAAAATTGGTACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAA
* * *
21147915 GGAAAATTGGTACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAA
* * **
21147972 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTTGAAAATTT-ATTTTTAA
* *
21148032 GGAAAATTGATACTTTCATCTTTTCC-CTAAAAATATTTTTTGAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTGAAAA-TTT-ATTTTTAA
*
21148091 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCT-TTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA---TATTTTTTGAAAATTTATTTTTAA
* *
21148150 GGAAAATTGATACCTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAA
* * **
21148207 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACAGTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTGAAAATTT-ATTTTTAA
*
21148266 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTG-AAACTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTGAAAATTTATTTTTAA
* *
21148323 GGAAAATTGATACTTTCAAATTTTCCCCAAAAATA-TTTTTGAGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGA-AAATTTATTTTTAA
21148380 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGGAAAATTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTT-GAAAATTT-ATTTTTA
21148440 TTTAAAGAAA
Statistics
Matches: 471, Mismatches: 35, Indels: 34
0.87 0.06 0.06
Matches are distributed among these distances:
55 6 0.01
56 1 0.00
57 226 0.48
58 26 0.06
59 139 0.30
60 53 0.11
61 19 0.04
62 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.44
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAA
Found at i:21148268 original size:116 final size:114
Alignment explanation
Indices: 21147858--21148439 Score: 810
Period size: 116 Copynumber: 5.0 Consensus size: 114
21147848 TCTTGTGTGG
* *
21147858 GGAAAATTGGTACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
* *
21147923 GGTACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAA
66 GATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
* * **
21147972 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTTGAAAATTT-ATTTTTAAGGAAA
* * *
21148037 ATTGATACTTTCATCTTTTCC-CTAAAAATATTTTTTGAAAATTTTGATTTTCAA
63 ATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTGGAAA-TTT-ATTTTTAA
*
21148091 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCT-TTTTTTGAAATTTTATTTTTAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA---TATTTTTTGAAAATTTATTTTTAAGGAAA
*
21148155 ATTGATACCTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
63 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
* * **
21148207 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACAGTTTTTTGAAACTTTGATTTCCAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTGAAAATTT-ATTTTTAAGGAAAA
* *
21148272 TTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAACTTATTTTTAA
64 TTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
* *
21148323 GGAAAATTGATACTTTCAAATTTTCCCCAAAAATA-TTTTTGAGAAATTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGA-AAATTTATTTTTAAGGAAAAT
21148387 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGGAAAATTTGATTTTTA
65 TGATACTTTCAACTTTTCCTCAAAAATA--TTTTTTGG-AAATTT-ATTTTTA
21148440 TTTAAAGAAA
Statistics
Matches: 417, Mismatches: 33, Indels: 32
0.87 0.07 0.07
Matches are distributed among these distances:
114 80 0.19
115 18 0.04
116 153 0.37
117 55 0.13
118 57 0.14
119 53 0.13
122 1 0.00
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.44
Consensus pattern (114 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
GATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
Found at i:21148507 original size:17 final size:16
Alignment explanation
Indices: 21148485--21148524 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
21148475 AGTAAAACAA
*
21148485 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
21148501 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
21148518 AAATAAA
1 AAATAAA
21148525 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:21149478 original size:18 final size:18
Alignment explanation
Indices: 21149457--21149695 Score: 64
Period size: 18 Copynumber: 12.4 Consensus size: 18
21149447 ATAGATAATT
21149457 TAAAAAAATAATAAAAAA
1 TAAAAAAATAATAAAAAA
21149475 TAAAATAAAATAA-ACCCAAAAA
1 T-AAA-AAAATAATA---AAAAA
*
21149497 TATATTACAAATAATAATAATAA
1 TA-A--AAAAATAATAA-AA-AA
*
21149520 TAATAATAATAATAATAAAGA
1 TAA-AAAAATAATAA-AAA-A
* * * * *
21149541 TATATACATATTAATAAA
1 TAAAAAAATAATAAAAAA
** *
21149559 TAAGTAAATAGCTA-AAA-
1 TAAAAAAATA-ATAAAAAA
* *
21149576 TAAAAAAATATATATATATA
1 TAAAAAAATA-ATA-AAAAA
21149596 TA-AAAAATAAT-AAAAA
1 TAAAAAAATAATAAAAAA
21149612 TAAAAATAA-AAT-AAAAA
1 TAAAAA-AATAATAAAAAA
*
21149629 TAAAAATAAAAAT-AAAAA
1 TAAAAA-AATAATAAAAAA
*
21149647 TAAAAATAAAAATGAAAATAA
1 TAAAAA-AATAAT-AAAA-AA
*
21149668 AAATAAAAATGAA-AATAAAA
1 TAA-AAAAAT-AATAA-AAAA
21149688 TAAAAAAA
1 TAAAAAAA
21149696 AAAACATATA
Statistics
Matches: 171, Mismatches: 25, Indels: 49
0.70 0.10 0.20
Matches are distributed among these distances:
16 5 0.03
17 30 0.18
18 36 0.21
19 21 0.12
20 26 0.15
21 26 0.15
22 15 0.09
23 10 0.06
24 2 0.01
ACGTcount: A:0.72, C:0.03, G:0.02, T:0.23
Consensus pattern (18 bp):
TAAAAAAATAATAAAAAA
Found at i:21149517 original size:6 final size:6
Alignment explanation
Indices: 21149506--21149690 Score: 82
Period size: 6 Copynumber: 30.3 Consensus size: 6
21149496 ATATATTACA
*
21149506 AATAAT AATAAT AATAAT AATAAT AATAAT AA-AGAT ATATACAT ATTAAT
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATA-AT A-ATA-AT AATAAT
* *
21149556 AAATAAGT AAATAGCT AA-AAT AA-AAA AATATAT ATATATAT AA-AA-
1 -AATAA-T -AATA-AT AATAAT AATAAT AATA-AT A-ATA-AT AATAAT
* * * * * *
21149601 AATAAT AAAAAT AAAAAT AA-AAT AAAAAT AAAAAT AAAAAT AAAAAT
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT
* * * *
21149648 AAAAAT AAAAAT GAA-AAT AAAAAT AAAAAT GAA-AAT AA-AAT AA
1 AATAAT AATAAT -AATAAT AATAAT AATAAT -AATAAT AATAAT AA
21149691 AAAAAAAAAC
Statistics
Matches: 156, Mismatches: 8, Indels: 31
0.80 0.04 0.16
Matches are distributed among these distances:
4 2 0.01
5 25 0.16
6 95 0.61
7 16 0.10
8 18 0.12
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.24
Consensus pattern (6 bp):
AATAAT
Found at i:21149556 original size:41 final size:42
Alignment explanation
Indices: 21149492--21149622 Score: 119
Period size: 43 Copynumber: 3.1 Consensus size: 42
21149482 AAATAAACCC
*
21149492 AAAAATATATTACAAATAATAATAATAATAATAATAATAATAAT
1 AAAAATATA-TACATAT-ATAATAATAATAATAATAATAATAAT
* *
21149536 AAAGATATATACATAT-TAATAAATAAGTAAATAGCTAA-AATAA-
1 AAAAATATATACATATATAAT-AATAA-T-AATA-ATAATAATAAT
* * *
21149579 AAAAATATATATATATATAA-AA-AATAATAAAAATAAAAAT
1 AAAAATATATACATATATAATAATAATAATAATAATAATAAT
21149619 AAAA
1 AAAA
21149623 TAAAAATAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 18
0.73 0.08 0.18
Matches are distributed among these distances:
38 2 0.03
39 8 0.11
40 5 0.07
41 6 0.08
42 7 0.10
43 21 0.29
44 20 0.28
45 3 0.04
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (42 bp):
AAAAATATATACATATATAATAATAATAATAATAATAATAAT
Found at i:21149699 original size:6 final size:6
Alignment explanation
Indices: 21149604--21149698 Score: 151
Period size: 6 Copynumber: 16.3 Consensus size: 6
21149594 TATAAAAAAT
21149604 AATAAA AATAAA AAT-AA AATAAA AATAAA AATAAA AATAAA AATAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
* *
21149651 AATAAA AATGAA AATAAA AATAAA AATGAA AAT-AA AATAAA AA-AAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
21149697 AA
1 AA
21149699 ACATATACTT
Statistics
Matches: 84, Mismatches: 3, Indels: 5
0.91 0.03 0.05
Matches are distributed among these distances:
5 15 0.18
6 69 0.82
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (6 bp):
AATAAA
Found at i:21149989 original size:5 final size:5
Alignment explanation
Indices: 21149974--21150078 Score: 59
Period size: 5 Copynumber: 19.0 Consensus size: 5
21149964 AGTAAATAGC
* * *
21149974 TAAAA TAAAAA TAAAA GAAAA AAATATA TAAAA TAATAA TAATAA -AAAT
1 TAAAA T-AAAA TAAAA TAAAA TAA-A-A TAAAA TAA-AA TAA-AA TAAAA
* *
21150023 TAAAT TAAAT TAAAA TTAAAAA TAAAAA TAAAAA TGAAAA TAAAA TAAAAA
1 TAAAA TAAAA TAAAA -T-AAAA T-AAAA T-AAAA T-AAAA TAAAA T-AAAA
21150074 TAAAA
1 TAAAA
21150079 ATAACCATAT
Statistics
Matches: 86, Mismatches: 6, Indels: 16
0.80 0.06 0.15
Matches are distributed among these distances:
4 1 0.01
5 39 0.45
6 39 0.45
7 7 0.08
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (5 bp):
TAAAA
Found at i:21150048 original size:12 final size:11
Alignment explanation
Indices: 21149974--21150082 Score: 87
Period size: 11 Copynumber: 9.3 Consensus size: 11
21149964 AGTAAATAGC
21149974 TAAAATAAAAA
1 TAAAATAAAAA
*
21149985 TAAAAGAAAAA
1 TAAAATAAAAA
21149996 -AATATATAAAATAA
1 TAA-A-AT-AAA-AA
21150010 TAATAATAAAAA
1 TAA-AATAAAAA
* * *
21150022 TTAAATTAAAT
1 TAAAATAAAAA
21150033 TAAAATTAAAAA
1 TAAAA-TAAAAA
21150045 TAAAAATAAAAA
1 T-AAAATAAAAA
21150057 TGAAAAT-AAAA
1 T-AAAATAAAAA
21150068 TAAAAATAAAAA
1 T-AAAATAAAAA
21150080 TAA
1 TAA
21150083 CCATATACTT
Statistics
Matches: 80, Mismatches: 10, Indels: 16
0.75 0.09 0.15
Matches are distributed among these distances:
10 2 0.03
11 33 0.41
12 27 0.34
13 10 0.12
14 4 0.05
15 4 0.05
ACGTcount: A:0.75, C:0.00, G:0.02, T:0.23
Consensus pattern (11 bp):
TAAAATAAAAA
Found at i:21150054 original size:35 final size:35
Alignment explanation
Indices: 21149975--21150082 Score: 112
Period size: 35 Copynumber: 3.0 Consensus size: 35
21149965 GTAAATAGCT
*
21149975 AAAATAAAAAT-AAAAGAAAA-AAATATATAAAATAATA
1 AAAATAAAAATGAAAATAAAATAAA-A-AT-AAA-AATA
* * * * *
21150012 ATAATAAAAATTAAATTAAATTAAAATTAAAAATA
1 AAAATAAAAATGAAAATAAAATAAAAATAAAAATA
21150047 AAAATAAAAATGAAAATAAAATAAAAATAAAAATA
1 AAAATAAAAATGAAAATAAAATAAAAATAAAAATA
21150082 A
1 A
21150083 CCATATACTT
Statistics
Matches: 59, Mismatches: 10, Indels: 6
0.79 0.13 0.08
Matches are distributed among these distances:
35 35 0.59
36 3 0.05
37 11 0.19
38 7 0.12
39 3 0.05
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (35 bp):
AAAATAAAAATGAAAATAAAATAAAAATAAAAATA
Found at i:21150081 original size:6 final size:6
Alignment explanation
Indices: 21149975--21150082 Score: 96
Period size: 6 Copynumber: 18.2 Consensus size: 6
21149965 GTAAATAGCT
* * * *
21149975 AAAATA AAAATA AAAGAAA AAAATA TATAA-A ATAATA ATAATA AAAAT-
1 AAAATA AAAATA AAA-ATA AAAATA -AAAATA AAAATA AAAATA AAAATA
* * * * *
21150023 TAAATT AAATTA AAATTA AAAATA AAAATA AAAATG AAAAT- AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
21150070 AAAATA AAAATA A
1 AAAATA AAAATA A
21150083 CCATATACTT
Statistics
Matches: 87, Mismatches: 10, Indels: 10
0.81 0.09 0.09
Matches are distributed among these distances:
5 13 0.15
6 66 0.76
7 8 0.09
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (6 bp):
AAAATA
Found at i:21150385 original size:11 final size:11
Alignment explanation
Indices: 21150369--21150394 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
21150359 AGGCAACCCC
21150369 TTTTTTGTTTT
1 TTTTTTGTTTT
21150380 TTTTTTGTTTT
1 TTTTTTGTTTT
21150391 TTTT
1 TTTT
21150395 AAAGCTCCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.08, T:0.92
Consensus pattern (11 bp):
TTTTTTGTTTT
Found at i:21150457 original size:42 final size:42
Alignment explanation
Indices: 21150398--21150735 Score: 531
Period size: 41 Copynumber: 8.1 Consensus size: 42
21150388 TTTTTTTAAA
21150398 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
21150440 GCTCCTCCAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
21150482 GCTCCTCTAAATAGAGGCACCACGACTTTGGAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* *
21150523 GCTCCTCTAAACAGAGGTACCACGACTTT-GAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* * *
21150564 ACTCCTCTAAACAGAGGCACCACCACTTAGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* ** *
21150605 GCTCCTCTAAACAGAAGCACCATAACTTT-GAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
21150646 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* *
21150688 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
21150730 GCTCCT
1 GCTCCT
21150736 TAACAATCAT
Statistics
Matches: 270, Mismatches: 22, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
40 6 0.02
41 132 0.49
42 132 0.49
ACGTcount: A:0.38, C:0.24, G:0.16, T:0.22
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Found at i:21152014 original size:27 final size:29
Alignment explanation
Indices: 21151983--21152056 Score: 91
Period size: 27 Copynumber: 2.6 Consensus size: 29
21151973 TTTGAATCTC
*
21151983 CTTTTTTCATTTTCTCAT-TTCTTTTTT-T
1 CTTTTTTCATTTT-TCATCATCTTTTTTCT
*
21152011 -TTTTTTCTTTTTTCATCATCTTTTTTCT
1 CTTTTTTCATTTTTCATCATCTTTTTTCT
*
21152039 CTTTTCTCATTTTTCATC
1 CTTTTTTCATTTTTCATC
21152057 CATTGTTGAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
26 4 0.10
27 19 0.49
28 1 0.03
29 15 0.38
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (29 bp):
CTTTTTTCATTTTTCATCATCTTTTTTCT
Found at i:21152034 original size:20 final size:18
Alignment explanation
Indices: 21152010--21152052 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
21152000 TTTCTTTTTT
*
21152010 TTTTTTTCTTTTTTCATCA
1 TTTTTTTCTCTTTTC-TCA
21152029 TCTTTTTTCTCTTTTCTCA
1 T-TTTTTTCTCTTTTCTCA
21152048 TTTTT
1 TTTTT
21152053 CATCCATTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 5 0.23
20 13 0.59
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTCTCTTTTCTCA
Found at i:21152036 original size:29 final size:28
Alignment explanation
Indices: 21151983--21152056 Score: 71
Period size: 29 Copynumber: 2.6 Consensus size: 28
21151973 TTTGAATCTC
* *
21151983 CTTTTTTCATTTTC-TCATTTCTTTTTT
1 CTTTTTTCTTTTTCATCATTTCTTTTCT
*
21152010 TTTTTTTCTTTTTTCATCATCTT-TTTTCT
1 CTTTTTTC-TTTTTCATCAT-TTCTTTTCT
*
21152039 CTTTTCTCATTTTTCATC
1 CTTTTTTC-TTTTTCATC
21152057 CATTGTTGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
27 7 0.18
28 5 0.13
29 24 0.63
30 2 0.05
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.72
Consensus pattern (28 bp):
CTTTTTTCTTTTTCATCATTTCTTTTCT
Found at i:21155943 original size:57 final size:57
Alignment explanation
Indices: 21155879--21156267 Score: 534
Period size: 57 Copynumber: 6.7 Consensus size: 57
21155869 TCTTGTGTAG
*
21155879 GGAAAATTGGTACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTTAA
* * **
21155936 GGAAAATTGATACTTTCAACTTTT-CCTAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGAAAATTT-ATTTTTAA
* * *
21155995 GGAAAATTGATACTTTCATCTTTTCCCTAAAAATATTTTTTGAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAA-TTT-ATTTTTAA
* *
21156054 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCT-TTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA---TATTTTTTGAAAATTTATTTTTAA
* *
21156113 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTG-AAACTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGAAAATTTATTTTTAA
21156170 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT-AGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGA-AAATTTATTTTTAA
* *
21156227 GGAAAATTGATAGTTTCAACTTTTCCTCAAAAATATTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTT
21156268 TTGGAAATTT
Statistics
Matches: 301, Mismatches: 19, Indels: 24
0.88 0.06 0.07
Matches are distributed among these distances:
56 16 0.05
57 121 0.40
58 30 0.10
59 110 0.37
60 13 0.04
61 10 0.03
62 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTTAA
Found at i:21156191 original size:30 final size:30
Alignment explanation
Indices: 21156103--21156191 Score: 73
Period size: 30 Copynumber: 3.1 Consensus size: 30
21156093 TTTTGAAATT
21156103 TTATTTTTAAGGAAAATTGATACTTTCAAC
1 TTATTTTTAAGGAAAATTGATACTTTCAAC
* * * *
21156133 TT-TTCCTCAA--AAATATT--T-TTTTGAAAC
1 TTATT-TTTAAGGAAA-ATTGATACTTT-CAAC
21156160 TTATTTTTAAGGAAAATTGATACTTTCAAC
1 TTATTTTTAAGGAAAATTGATACTTTCAAC
21156190 TT
1 TT
21156192 TTCCCCAAAA
Statistics
Matches: 42, Mismatches: 8, Indels: 18
0.62 0.12 0.26
Matches are distributed among these distances:
26 3 0.07
27 9 0.21
28 8 0.19
29 8 0.19
30 11 0.26
31 3 0.07
ACGTcount: A:0.35, C:0.11, G:0.08, T:0.46
Consensus pattern (30 bp):
TTATTTTTAAGGAAAATTGATACTTTCAAC
Found at i:21156354 original size:17 final size:16
Alignment explanation
Indices: 21156332--21156371 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
21156322 AGTAAAACAA
*
21156332 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
21156348 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
21156365 AAATAAA
1 AAATAAA
21156372 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:21157356 original size:7 final size:8
Alignment explanation
Indices: 21157339--21157555 Score: 51
Period size: 7 Copynumber: 27.5 Consensus size: 8
21157329 GATAATTTAA
21157339 AAAATAAT
1 AAAATAAT
21157347 AAAA-AAT
1 AAAATAAT
21157354 AAAATAAGAT
1 AAAAT-A-AT
*
21157364 AAAACCAA-
1 AAAA-TAAT
*
21157372 AAATATATT
1 AAA-ATAAT
21157381 ACAAA-AA-
1 A-AAATAAT
*
21157388 ATAATAAT
1 AAAATAAT
21157396 AATAATAAT
1 AA-AATAAT
21157405 AAAGATATAT
1 AAA-ATA-AT
*
21157415 ACATATTAAT
1 A-A-AATAAT
21157425 -AAATAAGT
1 AAAATAA-T
*
21157433 -AAATAGCT
1 AAAATA-AT
21157441 AAAAT-A-
1 AAAATAAT
21157447 AAAATAA-
1 AAAATAAT
21157454 AAGAA-AA-
1 AA-AATAAT
21157461 AAAAT-AT
1 AAAATAAT
21157468 AAAATAAT
1 AAAATAAT
21157476 --AATAAT
1 AAAATAAT
21157482 -AAA-AAT
1 AAAATAAT
*
21157488 AAAATAAA
1 AAAATAAT
*
21157496 AATAAAAAT
1 AA-AATAAT
21157505 AAAAT-A-
1 AAAATAAT
*
21157511 AAAATAAA
1 AAAATAAT
*
21157519 AATAAAAAT
1 AA-AATAAT
21157528 GAAAATAA-
1 -AAAATAAT
*
21157536 AAACAAAAT
1 AAA-ATAAT
21157545 AAAATAA-
1 AAAATAAT
21157552 AAAA
1 AAAA
21157556 AAACATATAC
Statistics
Matches: 158, Mismatches: 19, Indels: 65
0.65 0.08 0.27
Matches are distributed among these distances:
6 24 0.15
7 40 0.25
8 37 0.23
9 37 0.23
10 16 0.10
11 3 0.02
12 1 0.01
ACGTcount: A:0.74, C:0.03, G:0.03, T:0.21
Consensus pattern (8 bp):
AAAATAAT
Found at i:21157398 original size:6 final size:6
Alignment explanation
Indices: 21157387--21157523 Score: 63
Period size: 6 Copynumber: 22.8 Consensus size: 6
21157377 TATTACAAAA
* *
21157387 AATAAT AATAAT AATAAT AA-AGAT ATATACAT ATTAAT AAATAAGT AAATAGCT
1 AATAAT AATAAT AATAAT AATA-AT A-ATA-AT AATAAT -AATAA-T -AATA-AT
* * * * *
21157441 AA-AAT AAAAAT AA-AAG AAAAAA AAT-AT AA-AAT AATAAT AATAAA
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT
* * * *
21157485 AATAA- AATAAA AATAAA AATAA- AATAAA AATAAA AATAA
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AATAA
21157524 AAATGAAAAT
Statistics
Matches: 109, Mismatches: 10, Indels: 24
0.76 0.07 0.17
Matches are distributed among these distances:
5 25 0.23
6 64 0.59
7 9 0.08
8 11 0.10
ACGTcount: A:0.72, C:0.01, G:0.03, T:0.23
Consensus pattern (6 bp):
AATAAT
Done.