Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 123 of 195
Found at i:21157461 original size:17 final size:16
Alignment explanation
Indices: 21157441--21157558 Score: 125
Period size: 17 Copynumber: 7.2 Consensus size: 16
21157431 GTAAATAGCT
21157441 AAAATAAAAAT-AAAA
1 AAAATAAAAATAAAAA
* *
21157456 GAAA-AAAAATATAAA
1 AAAATAAAAATAAAAA
* *
21157471 ATAATAATAATAAAAA
1 AAAATAAAAATAAAAA
21157487 TAAAATAAAAATAAAAA
1 -AAAATAAAAATAAAAA
21157504 TAAAATAAAAATAAAAATA
1 -AAAATAAAAAT-AAAA-A
*
21157523 AAAATGAAAATAAAAA
1 AAAATAAAAATAAAAA
21157539 CAAAAT-AAAATAAAAA
1 -AAAATAAAAATAAAAA
21157555 AAAA
1 AAAA
21157559 CATATACTTA
Statistics
Matches: 88, Mismatches: 9, Indels: 12
0.81 0.08 0.11
Matches are distributed among these distances:
14 6 0.07
15 12 0.14
16 20 0.23
17 35 0.40
18 14 0.16
19 1 0.01
ACGTcount: A:0.81, C:0.01, G:0.02, T:0.16
Consensus pattern (16 bp):
AAAATAAAAATAAAAA
Found at i:21157524 original size:6 final size:6
Alignment explanation
Indices: 21157441--21157558 Score: 124
Period size: 6 Copynumber: 20.5 Consensus size: 6
21157431 GTAAATAGCT
* * *
21157441 AAAATA AAAAT- AAAAGA AAAA-A AATATAA AATAATA ATAATA AAAAT-
1 AAAATA AAAATA AAAATA AAAATA AAAAT-A AA-AATA AAAATA AAAATA
*
21157488 AAAATA AAAATA AAAAT- AAAATA AAAATA AAAATA AAAATG AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
*
21157535 AAAA-C AAAAT- AAAATA AAAA-A AAA
1 AAAATA AAAATA AAAATA AAAATA AAA
21157559 CATATACTTA
Statistics
Matches: 96, Mismatches: 8, Indels: 17
0.79 0.07 0.14
Matches are distributed among these distances:
5 31 0.32
6 58 0.60
7 5 0.05
8 2 0.02
ACGTcount: A:0.81, C:0.01, G:0.02, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:21157863 original size:13 final size:13
Alignment explanation
Indices: 21157845--21157872 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
21157835 AGGCAACCCC
21157845 TTTTTTTGTTTTT
1 TTTTTTTGTTTTT
21157858 TTTTTTTGTTTTT
1 TTTTTTTGTTTTT
21157871 TT
1 TT
21157873 AAAGCTCCTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (13 bp):
TTTTTTTGTTTTT
Found at i:21157935 original size:42 final size:42
Alignment explanation
Indices: 21157876--21158160 Score: 416
Period size: 41 Copynumber: 7.1 Consensus size: 42
21157866 TTTTTTTAAA
*
21157876 GCTCCTCTAAATAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* **
21157918 GCTCCTCTAAACAGAGGCAACTTGACTTTGGAAAA-TAAA--
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
21157957 -----T-T-AACAGAGGCACCACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
21157991 GCTCCTCTAAATAGAGGCACCACGACTTTGG-AAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
21158032 GCTCCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* *
21158073 GCTCCTCTAAACAGAGGCACCACAACTTTGGAAAAGTAAGTT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
21158115 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
21158157 GCTC
1 GCTC
21158161 ATTGACAATC
Statistics
Matches: 218, Mismatches: 13, Indels: 24
0.85 0.05 0.09
Matches are distributed among these distances:
31 3 0.01
32 23 0.11
33 1 0.00
34 1 0.00
39 1 0.00
40 2 0.01
41 101 0.46
42 86 0.39
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Found at i:21157963 original size:32 final size:32
Alignment explanation
Indices: 21157927--21157990 Score: 92
Period size: 32 Copynumber: 2.0 Consensus size: 32
21157917 TGCTCCTCTA
**
21157927 AACAGAGGCAACTTGACTTTGGAAAATAAATT
1 AACAGAGGCAACACGACTTTGGAAAATAAATT
* *
21157959 AACAGAGGCACCACGACTTTGGAAAGTAAATT
1 AACAGAGGCAACACGACTTTGGAAAATAAATT
21157991 GCTCCTCTAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.42, C:0.16, G:0.20, T:0.22
Consensus pattern (32 bp):
AACAGAGGCAACACGACTTTGGAAAATAAATT
Found at i:21159455 original size:16 final size:17
Alignment explanation
Indices: 21159418--21159490 Score: 60
Period size: 16 Copynumber: 4.2 Consensus size: 17
21159408 CCTTTTTTCA
21159418 TTTTTCA-TTTCTCATT
1 TTTTTCATTTTCTCATT
* *
21159434 TCTTTCATTTTCT-TTT
1 TTTTTCATTTTCTCATT
*
21159450 TTTTTCTTTTTTCATCATCT
1 TTTTTC-ATTTTC-TCAT-T
*
21159470 TTTTTCTCTTTTCTCATT
1 TTTTTC-ATTTTCTCATT
21159488 TTT
1 TTT
21159491 CATCCATTGT
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
16 13 0.28
17 10 0.22
18 5 0.11
19 5 0.11
20 13 0.28
ACGTcount: A:0.08, C:0.19, G:0.00, T:0.73
Consensus pattern (17 bp):
TTTTTCATTTTCTCATT
Found at i:21159472 original size:20 final size:18
Alignment explanation
Indices: 21159425--21159490 Score: 64
Period size: 20 Copynumber: 3.7 Consensus size: 18
21159415 TCATTTTTCA
* *
21159425 TTTCTCATTTCTTTC-AT
1 TTTCTCATTTTTTTCTCT
* *
21159442 TTTCT-TTTTTTTTCTTT
1 TTTCTCATTTTTTTCTCT
21159459 TTTCATCATCTTTTTTCTCT
1 TTTC-TCAT-TTTTTTCTCT
21159479 TTTCTCATTTTT
1 TTTCTCATTTTT
21159491 CATCCATTGT
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
16 7 0.17
17 10 0.25
18 5 0.12
19 5 0.12
20 13 0.32
ACGTcount: A:0.08, C:0.20, G:0.00, T:0.73
Consensus pattern (18 bp):
TTTCTCATTTTTTTCTCT
Found at i:21160363 original size:23 final size:23
Alignment explanation
Indices: 21160327--21160389 Score: 108
Period size: 23 Copynumber: 2.7 Consensus size: 23
21160317 TCACATTGCA
21160327 AAAAGAAAATCCAACAATCACTCG
1 AAAAG-AAATCCAACAATCACTCG
21160351 AAAAGAAATCCAACAATCACTCG
1 AAAAGAAATCCAACAATCACTCG
21160374 AAAAGAAATCCTAACA
1 AAAAGAAATCC-AACA
21160390 TGACAAAAGA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
23 29 0.76
24 9 0.24
ACGTcount: A:0.56, C:0.24, G:0.08, T:0.13
Consensus pattern (23 bp):
AAAAGAAATCCAACAATCACTCG
Found at i:21161437 original size:59 final size:57
Alignment explanation
Indices: 21161195--21161544 Score: 468
Period size: 57 Copynumber: 6.0 Consensus size: 57
21161185 TCTTGTGTGG
* * * *
21161195 GGAAAATTGGTACTTTCAACTTTACCCCAAAAATATTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
* *
21161252 GGAAAATTGGTACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
* * **
21161309 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTGGAAA-TTT-ATTTTTAA
** * *
21161369 GGAAAATTGATACTTTCCTCTTTTCC-CTAAAAATATTTTTTGAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTGGAAA-TTT-ATTTTTAA
21161428 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
*
21161485 GGCAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTTGGAAA-TTT-ATTTTTA
21161545 TTTAGAGAAA
Statistics
Matches: 264, Mismatches: 20, Indels: 14
0.89 0.07 0.05
Matches are distributed among these distances:
57 128 0.48
58 13 0.05
59 75 0.28
60 41 0.16
61 7 0.03
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
Found at i:21161494 original size:176 final size:175
Alignment explanation
Indices: 21161195--21161541 Score: 570
Period size: 176 Copynumber: 2.0 Consensus size: 175
21161185 TCTTGTGTGG
* *
21161195 GGAAAATTGGTACTTTCAACTTTACCCCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTACCCCAAAAATATTTTTTGAAAATTTATTTTCAAGGAAAATT
*
21161260 GGTACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATTGATACTTT
66 GATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATTGATACTTT
21161325 CAACTTTTCCTAAAAAATATTTTTTTT-GAAACTTTGATTTCCAA
131 CAACTTTTCCTAAAAAATATTTTTTTTGGAAACTTTGATTTCCAA
** * *
21161369 GGAAAATTGATACTTTCCTCTTTTCCCTAAAAATATTTTTTGAAAATTTTGATTTTCAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTACCCCAAAAATATTTTTTGAAAA-TTT-ATTTTCAAGGAAAA
* *
21161434 TTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAAGGCAAATTGATACT
64 TTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATTGATACT
* *
21161499 TTCAACTTTTCCTCAAAAATATTTTTTTTGGAAATTTTGATTT
129 TTCAACTTTTCCTAAAAAATATTTTTTTTGGAAACTTTGATTT
21161542 TTATTTAGAG
Statistics
Matches: 159, Mismatches: 11, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
174 41 0.26
175 3 0.02
176 103 0.65
177 12 0.08
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (175 bp):
GGAAAATTGATACTTTCAACTTTACCCCAAAAATATTTTTTGAAAATTTATTTTCAAGGAAAATT
GATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATTGATACTTT
CAACTTTTCCTAAAAAATATTTTTTTTGGAAACTTTGATTTCCAA
Found at i:21161584 original size:6 final size:6
Alignment explanation
Indices: 21161552--21161620 Score: 54
Period size: 6 Copynumber: 11.5 Consensus size: 6
21161542 TTATTTAGAG
* * *
21161552 AAAATA GAATAATA AAAA-A ATAAATA AAAATA AAAA-A TAAAGA AAAGT-
1 AAAATA -AA-AATA AAAATA A-AAATA AAAATA AAAATA AAAATA AAAATA
*
21161600 AAAACA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAA
21161621 TTAAGATAAA
Statistics
Matches: 50, Mismatches: 7, Indels: 11
0.74 0.10 0.16
Matches are distributed among these distances:
5 9 0.18
6 31 0.62
7 6 0.12
8 4 0.08
ACGTcount: A:0.80, C:0.01, G:0.04, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:21161588 original size:17 final size:17
Alignment explanation
Indices: 21161566--21161620 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
21161556 TAGAATAATA
21161566 AAAAAATAAATAAAAAT
1 AAAAAATAAATAAAAAT
* *
21161583 AAAAAATAAAGAAAAGT
1 AAAAAATAAATAAAAAT
21161600 AAAACAA-AAATAAAAAT
1 AAAA-AATAAATAAAAAT
21161617 AAAA
1 AAAA
21161621 TTAAGATAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 31 0.94
18 2 0.06
ACGTcount: A:0.82, C:0.02, G:0.04, T:0.13
Consensus pattern (17 bp):
AAAAAATAAATAAAAAT
Found at i:21161629 original size:17 final size:16
Alignment explanation
Indices: 21161607--21161646 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
21161597 AGTAAAACAA
*
21161607 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
21161623 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
21161640 AAATAAA
1 AAATAAA
21161647 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:21162705 original size:6 final size:6
Alignment explanation
Indices: 21162694--21162806 Score: 101
Period size: 6 Copynumber: 19.0 Consensus size: 6
21162684 GTAAATAGCT
* * *
21162694 AAAATA AAAATAA AAGAAAA AAAATA TAAAATA ATAATA AAAAT- AAAATT
1 AAAATA AAAAT-A AA-AATA AAAATA -AAAATA AAAATA AAAATA AAAATA
* * *
21162744 AAAAT- AAAAT- AAAATA AAAATG AAAAGA AAAATG AAAATA AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
21162790 AAAA-A AATAA-A AAAATA
1 AAAATA AA-AATA AAAATA
21162807 TATATATACT
Statistics
Matches: 90, Mismatches: 10, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
5 20 0.22
6 56 0.62
7 12 0.13
8 2 0.02
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.17
Consensus pattern (6 bp):
AAAATA
Found at i:21162726 original size:44 final size:39
Alignment explanation
Indices: 21162694--21162806 Score: 126
Period size: 39 Copynumber: 2.9 Consensus size: 39
21162684 GTAAATAGCT
21162694 AAAATAAAAATAAAAGAAAA-AAAATATAAAATAATAATA
1 AAAATAAAAATAAAAGAAAATAAAATA-AAAATAATAATA
* * *
21162733 AAAATAAAATTAAAATAAAATAAAATAAAAATGAA-AAGA
1 AAAATAAAAATAAAAGAAAATAAAATAAAAAT-AATAATA
* *
21162772 AAAATGAAAATAAAA-ATAAAAAAAATAAAAA-AATA
1 AAAATAAAAATAAAAGA-AAATAAAATAAAAATAATA
21162807 TATATATACT
Statistics
Matches: 64, Mismatches: 6, Indels: 9
0.81 0.08 0.11
Matches are distributed among these distances:
37 2 0.03
38 2 0.03
39 52 0.81
40 8 0.12
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.17
Consensus pattern (39 bp):
AAAATAAAAATAAAAGAAAATAAAATAAAAATAATAATA
Found at i:21162733 original size:33 final size:32
Alignment explanation
Indices: 21162693--21162802 Score: 127
Period size: 33 Copynumber: 3.3 Consensus size: 32
21162683 AGTAAATAGC
21162693 TAAAATAAAAATAAAA-GAAAAAAAATATAAAA
1 TAAAATAAAAATAAAATGAAAAAAAA-ATAAAA
* *
21162725 TAATAATAAAAATAAAATTAAAATAAAATAAAA
1 TAA-AATAAAAATAAAATGAAAAAAAAATAAAA
21162758 TAAAAATGAAAAGA-AAAATGAAAATAAAAATAAAA
1 T-AAAAT-AAAA-ATAAAATGAAAA-AAAAATAAAA
21162793 -AAAATAAAAA
1 TAAAATAAAAA
21162803 AATATATATA
Statistics
Matches: 68, Mismatches: 4, Indels: 13
0.80 0.05 0.15
Matches are distributed among these distances:
31 1 0.01
32 7 0.10
33 28 0.41
34 22 0.32
35 10 0.15
ACGTcount: A:0.79, C:0.00, G:0.04, T:0.17
Consensus pattern (32 bp):
TAAAATAAAAATAAAATGAAAAAAAAATAAAA
Found at i:21163421 original size:26 final size:26
Alignment explanation
Indices: 21163385--21163437 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21163375 GTTGACTTAG
* * * *
21163385 GCATACGGAGTTCTTTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
21163411 GCATACAGAGTTCATTCCCACTCTAA
1 GCATACAGAGTTCATTCCCACTCTAA
21163437 G
1 G
21163438 ATCAAACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCACTCTAA
Found at i:21165027 original size:26 final size:26
Alignment explanation
Indices: 21164998--21165050 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21164988 GTTGACTTAG
21164998 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
21165024 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
21165050 G
1 G
21165051 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:21165934 original size:26 final size:26
Alignment explanation
Indices: 21165898--21165950 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21165888 GTTAACTTAG
21165898 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
21165924 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21165950 G
1 G
21165951 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21168573 original size:26 final size:26
Alignment explanation
Indices: 21168537--21168589 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21168527 GTTAACTTTG
*
21168537 GCATACGGAGTGT-TTTCCCAGTCTAA
1 GCATACGGAGT-TCATTCCCAGTCTAA
21168563 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21168589 G
1 G
21168590 ATCGGATCCG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21170326 original size:26 final size:26
Alignment explanation
Indices: 21170290--21170342 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21170280 GTTGACTTAG
21170290 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21170316 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21170342 G
1 G
21170343 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21171216 original size:26 final size:26
Alignment explanation
Indices: 21171186--21171238 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21171176 GTTGACTTAG
21171186 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
21171212 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAGTCTAA
21171238 G
1 G
21171239 ATTGGATCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAGTCTAA
Found at i:21171895 original size:896 final size:894
Alignment explanation
Indices: 21169678--21189725 Score: 24115
Period size: 899 Copynumber: 22.5 Consensus size: 894
21169668 CCTTATATTG
21169678 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
21169743 GGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** * * * * * *
21169808 TGCATGCCAGGAAAAATACAAGGATCACATCTCCCAAG-TTGGGCCCAAAACTCCTTTCAAAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
** * * *
21169872 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATACAAATCGAGTCGTCTT
196 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
21169937 GCCATGAATCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCA
261 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
21170002 TTGGCACGTAGAAATATGAAGAAGTGCCTAAACCCACTTACCACCCTATCGATCCACGACTTGCG
326 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * * * * *
21170067 CATCCTGTCTCTCGGGTCGATGTAGTGCCTGCCCACCCATCCGCTCGTTTTGTCGGTTGGCTCAG
391 CATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-CGC--CCGCTCGTTTCGTCGGTTGGCTTAG
** * * *
21170132 GCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGGGTTGCGGCAGCATGATCGACA
452 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-GAGGGTTGCGGCAGCAAGATCGGCA
** * *
21170197 GCACGCAGA-GGGGACATGGTCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
516 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
21170261 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
581 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * ***
21170326 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATTCTACTCTCGGGCATG
646 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* ** * *
21170391 TGCAGGTGCTGCATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
711 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
** * *
21170456 CGGCATTGGGGTTC-GACGAT--GGGGGGTTGGAGGGGTGTGCGCACATGATGTGTGATGGGAGC
776 CGGCATTGGGGTTCTGACGATCGGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
21170518 TGGTACTTGGACCTTATATTCGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
840 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
21170573 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * * *
21170638 GGGGACACTTTTCTCAAACGATCAAAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTA
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
** *
21170703 TGCATGCCAACAAAAATACAAGGATCATTTCTACCAAGTTTGGGGCCAAAA-ATCCTTCTGAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAA
* * * * * *
21170767 AATTTTAAAAAATCCCAAACCGAAAAAAGTTTCAAAAATCATAAAAAATAGAAAACAAGTCATCT
195 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
21170832 TGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAGGCCATAAAAATGGC
260 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*** *
21170897 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGC
325 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
21170962 GCATCCCGTCTCTCTGGCCGACGTACTGCCCGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTA
390 GCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* *
21171027 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTACGGCAGCAAGATCGAC
451 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-GAGGGTTGCGGCAGCAAGATCGGC
* * * * *
21171092 AGCACGCAGA-GGGGACCTGATCGATCCCTGGTTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCG
515 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
21171156 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATATGGA
580 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * *
21171221 GTTCATTCCCAGTCTAAGATTGGATCAGATCAAGGGTTGCGACAGCACATGCTGGGCTCAGGCAT
645 GTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * *
21171286 GTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCG
710 GTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * ** *
21171351 ACGACATTGGGGTTCTGACGATCGGGGGGGTTGGGGGGGTGTGCACACATGATGTGCGATGGGTG
775 GCGGCATTGGGGTTCTGACGATCGGGGGGG-CCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
21171416 CTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
839 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
21171472 ACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
21171537 GGGGACATTTTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTGGCTGAATTTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
21171602 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTCGGGGCCAAAACACCTTCCGAAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
* * * * * *
21171667 ATTTTATCAAAATCCCAAACCGTATAAAGTTTCAAAAATCCTGAAAAATAGAAAATGAGTCATCT
196 ATTTTA-AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* **
21171732 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGTT
260 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
21171797 ATTGGCATGCAGAAATATGAAGATATTCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGC
325 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
21171862 GTATCCCGCCTCTCTGGCCAACGTAGTGCCCGCCCACCCGCCCGTCCGCTCGTCCGCTCGTCTGC
390 GCATCCCGTCTCTCTGGCCGACGTAGT------------G--C--CCG--C--CCGC-C--C-GC
* * * ** * *
21171927 TCGTTTCGTCGGTTGGCTTAGGCGTAAGGAGTTCATTCCCAGTCTAACATTGGTCTGGACTGAGG
431 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGG
* * * * ** ** *
21171992 GTTGTGGCAGCAAGATCGGCAGAACGTAGAGGGGGAACCCGACCGATCCATGGCTTATGCATCTC
495 GTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGG-ACCCGATCGATCCCCGGCTTGCGCATCCC
* * *
21172057 GCCCCTCTGGCAGACTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
559 GCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
21172122 TTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGA-CTGGACTGAGGGTTGCGGC
624 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGC
* * * * *
21172186 AGCACTTGCTGGGCTCGAGCTTGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAA
688 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGA
* * * * * * ** *
21172251 GCATCGCCAGAGAACCTGACCGACGACATTAGGGTTCCGGTGATC------G--GGGGGGTCTGC
753 GCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGC
**
21172308 GCACATGATGTGCGATGGGCACTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACC
818 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
21172372 TCGAGAACTCAC
883 TCGAGAACTCAC
* * *
21172384 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT-CTCGGTAGCCATTAAAGTGTTTAAAA
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-CAGTAGCCATTAAAGTGTCTGAAA
21172448 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
65 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *** *
21172513 TTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGACACCAAAACGCCTTCCGAAAA
130 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAA
* * ** * * *
21172578 AATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAATC-AGTCATC
195 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-CGAGTCGTC
** * *
21172642 TTGCCACAAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGG
259 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * *
21172707 CATTGGCACATAGAAATATGAAGATGAGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTG
324 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
21172772 CGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCTGCCCGCTCGTTTCGTCAGTTG
389 CGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCG-CC--C-GCCCGCTCGTTTCGTCGGTTG
* *
21172837 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGATCGAGGGTTGCGGCAGCAAG
446 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGAT-GAGGGTTGCGGCAGCAAG
* * * * * *
21172901 ATCAGCAGCACACAGAGGGGGACCCGACCGA-CCCTCGACTGGCGCATCCCGCCCCTCTGGCCGA
509 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * *
21172965 CTGAGCGACCGCACTCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-
573 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
*
21173029 AT-C-GA----A----C---C--AGA-C---T---A---AGGGTTGCGGCAGCACATGTTGGGCT
638 ATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
21173069 CGGGCATGTGCTGGTGCCACATTTTTCTTCG-CTAGGGCACCATCGTCGGTGCATCGCCGGAGAA
703 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * * * * * *** *
21173133 CTTGATCGGCGACATTAGGGTTCCGACGATCGGGGCGGCCGGGGGGTACACGCACATGATGTACG
767 CCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
*
21173198 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCAC
832 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
21173261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
21173326 GGGGACCCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * * * *
21173391 TCCATGCCAAAAAAAACACAAGGATCACGTATACAAAGTTTGGGTCAAAAACTCCTTCTGAAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
* * * *
21173456 ATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAGTCGTGAAAAATAGAAAACGAGTCGTCTT
196 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
21173521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
261 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
21173586 TTGGCAGGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCTATGGCTCGCG
326 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** *
21173651 CATCCCGTCTCTCTGGCAAACGCAGTGCCCGACCGCCCGCCCGCCTGCTCGTTTCGTCGGTTGGC
391 CATCCCGTCTCTCTGGCCGACGTAGTG--C--CCGCCCG--C-CC-GCTCGTTTCGTCGGTTGGC
* * * * * *
21173716 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCAGACCGAGGGTTGCGGTAGCAGGATT
448 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAAGATC
** * *
21173781 GATAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGA
512 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
21173846 ACGCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACAGAGTTCATT-CCAGTCTAAGCATAC
577 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* * * * * * *
21173910 GGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGTGGTAGCACATGCTAGGCTTGGG
642 GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * **
21173975 CATGTGGTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCACCGGAGAACCTGA
707 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * * * *
21174040 CCGGCGGCATTGGGGTTCTGGCGATC--AGGGGTCTGGGGGTGTGCGCACATGATGTGTGATGGG
772 CCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* ** *
21174103 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAATTTTGAGAACTCAC
837 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
21174161 A-CCCTTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTATGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
21174225 GGTGACACTGTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTTAGCT-AAGTTTTTTT
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* *
21174289 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAGA
130 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAA-A
* * *
21174354 AAATTTTAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTC
194 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
21174419 CTGCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCAT-AAAA---
259 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
21174480 -A-T-G-A---AGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATTGATCCACGGCTTG
324 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * ** *
21174538 CGCATCCTGTCTCTCTTTCAGGTGTAGCGCCCGCCCGCCTGCCCGCCTACTCGTTTCGTCGGTTG
389 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CC-GCCCG----CTCGTTTCGTCGGTTG
* * * *
21174603 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAGGGTTGTGGCAGCAGG
446 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA-TGAGGGTTGCGGCAGCAAG
* * * * * * *
21174667 ATCGGCAGCACGTAGAGGGGGAACCGGTTGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGT
509 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
21174732 TGAGCACCCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTCATTCCCAGTCTAAGCA
574 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * * * **
21174797 TACGCAGTTCATTCCCAGTCGAAGATC-AAACTGGACCGAGGGTTGTGGCAGCACATGCCAGGCT
639 TACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* ** * * * * * * *
21174861 CGAGCATGTGCTGGTGCTGCATTTTTCTTCGTC--GG-AGCATCGCCAGAGAACCTGACCGGCG-
703 CGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATC-G-TCGGAGA
* * * *
21174922 ACATTAGGGTACCGGCGGCATTGGGGTTCCGGCGATC-AGGGGGCCGGGGGAGGTGTGCGCACAT
766 AC-CT---G-ACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCC-GGGG-GGTGTGCGCACAT
* * *
21174986 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTTGAGA
824 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
21175051 ACTCAC
889 ACTCAC
*** * * * *
21175057 ACATGCTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAATGTGTCTGAAAC
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
21175122 GGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
21175187 TACACGCCAAGAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCAAAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
** * *
21175252 ATTTTAAAAAATCATGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTT
196 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
21175317 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAAG-CATAAAAATGGC
261 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGCCATAAAAATGGC
* * * *
21175381 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCATGACTTGC
325 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
21175446 GCATCCCGTCTCTCTGGCTGAAGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCAGTTGG
390 GCATCCCGTCTCTCTGGCCGACGTAGT----GCCCG--C-CC-GCCCGCTCGTTTCGTCGGTTGG
* * * * *
21175511 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTACGGTAGCAGGAT
447 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-GAGGGTTGCGGCAGCAAGAT
* * * * *
21175576 CGGCAGCACGCAGAGGGGGACCC-AGCCGATCCCCGGCTTGTGCATCTCACCCCTCTAGCCGGCT
511 CGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
21175640 AAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAC
575 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * * * * *
21175705 ACGTAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCAGTAGCACATCCTGGGCTCA
640 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * * ** * *
21175770 AGCATGTGCTAGTGCCGA-ATTTTTCTTCCTCAGGGCACCATCACCGAAGCATTGTCGGAGAACC
705 GGCATGTGCTGGTGCC-ACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * *
21175834 TGATCGGCGTCATTGGGGTT-TCGACGATTGGGGGGG-CGGGGGGTGTGCGCACATGATGTGCGA
769 TGACCGGCGGCATTGGGGTTCT-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* *
21175897 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAAAACTCAC
833 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
21175959 ACCCCTTTAAAAAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCGATTAAAGAGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
21176024 GGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACACTTCCAATTTTTAGC-GGATTGTTTTT
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
* * *
21176088 ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCC-AAAA
130 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAA
* * * * * * *
21176152 AATTTTTAAAAAAT-CTGAAAC-TGCAAAAGTTTCAAAAATCGAGAAAAATAGAAAATGGGTCAT
195 AA-TTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * *
21176215 CTTGGCATTAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCAATAAAAATG
258 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
21176280 GCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAATGGCTT
323 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
21176345 GCGCATCCCGTCTCTCTAGCCGTCGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGGCT
388 GCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
21176410 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGCTCAAGGGTTGCGGTAGCAGGATCG
449 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-GAGGGTTGCGGCAGCAAGATCG
* * * *
21176475 ACAGTACGCAGAGGGGGACCCGACCGAT---C--C-T---CA----G---CT-T-G-CGGTTGAG
513 GCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* ** *
21176521 CGCACGTGCGCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
578 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
21176586 GAGTTCATTCCCAGTCTAAGATCGGATGGGACCGAGGGTTGCGGCTGCACATACTGGGCTCGGGC
643 GAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
21176651 ATGTGCTGGTGCCACATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
708 ATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * *
21176715 CCGGCGGCATTAGGGTTCTGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGC
772 CCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
21176780 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
837 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
21176838 ACCCCC-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
21176902 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTGTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * *
21176967 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTTTGGCCAAAACTCCTTCTGAAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
* * * *
21177032 ATTTAAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
196 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * *
21177097 GGCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAACCCATAAAAATGGCA
261 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
21177162 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
326 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
21177227 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCAGCCGCCTGCTCGTTTTGTCGGTTAGC
391 CATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCC-G-C-CC-GCTCGTTTCGTCGGTTGGC
* * * * * ** *
21177292 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGCTTGTGTTAGCAGGATC
448 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAAGATC
* * * ** * *
21177357 GGTAGCACGTAGAGGAGGACTTGGTCGATCCCCGGCTTGCGCAT-CCGCCCCTCTGGCCGACTGA
512 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
21177421 GCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTAC
577 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
* ** * * * * * *
21177486 GGAGCTCATTCTTAGTCTAAGATCGGATTGAACCAAGGGTTACGGCAGCAAATGCTGGGCTCAGG
642 GGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
* * * * * *
21177551 CATGTGCTGGTGCCTCATTTTTCTTCGTCGGGGCGCCATCATCGGAGCATCGCCAGAGAACTTGA
707 CATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * ** * *
21177616 CCGACGGCATTGGGG-T-T--C---C--GGTGATCGAGGGGTG-GCGCACATGATGTGCGATTGG
772 CCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
21177671 TGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
837 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
21177729 ACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
21177794 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
21177859 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTTCGAAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
* * *
21177924 ATTTTAAAAAATCTC-AGACCGTAAAAAGTTTTAAAAATCGTGAAAAATTGAAAACGAGTCGTCT
196 ATTTTAAAAAATCCCGA-ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
21177988 TGCCATGAAACATCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
260 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * *
21178053 ATTGGCACACAAAAACATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
325 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
21178118 GCATCCCGTCTCTCTGGCTGACGTAGT----GCTCACCCGCTCGTTTCGTCAGTTGGCTTAGGCA
390 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * ** * *
21178179 TACAGAGTTAATTCCCAGTCTAAGATCAGACCGGACTGAGGGTCACGGTAGCAAGATCGGCTGCA
455 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAAGATCGGCAGCA
* * * * * * ** *
21178244 TGTAGAGGGGGA-CCGACCGATCCACGGCATGCGCATCCCGCCCCTCTAGTTGGCTGAAG-GCCT
519 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG-AGCGCCC
* *
21178307 GCACGCTCGTTTCGTGTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
583 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
21178372 CATTCCCAGTCTAACATCAGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAAGTG
648 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * *
21178437 CTGGTGCCGCATGGTGCCGCATTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGTCCGGAGAAC
713 CTGGTGCCACA---T------TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGT-CGGAGAAC
** * *
21178502 CTGACCGATGGCATTAGGGTTCCGACGAT---------CGGGGGGTGTGCGCACATGATGTGCGA
768 CTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * *
21178558 TTGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
833 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
21178620 ACCCCCTTAAAGAGCATTTGAGATTTTTCAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
21178685 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * **
21178750 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAATTTGGGACCAAAA-ATCCTTCTAAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAA
* * *
21178814 AATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAAACGAGTCGTC
195 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAACGAGTCGTC
* *
21178879 TTGCCATGAAACTTCACATGAAGCCTTAAGGGACCATT-TCATGAATTTACAAGCCATAAAAATG
259 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAAAATG
*
21178943 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
323 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* **
21179008 GCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGGATAGG
388 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * ** *
21179073 TATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACAGTC-GTAGGATTTGTA
453 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGC-GGCAGCAAGATCGGCA
** * * * * *
21179137 GCACATAGAGGGGGACCAG-TCGATCCCCGGCTTGCACATCCTGCCCCTCTAGCTGGCTGAGCGC
516 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
21179201 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGCCTAAGCATACGGAG
581 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
21179266 TTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGGAGCACACGCTGGGGTTGGGCATG
646 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * *
21179331 TGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACTTGACCGG
711 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* *
21179396 CGGCATTGGGGTT-TCGGCGAT-GGGGGGGCCGGGAGGGGGGGTGCGCGCACATGATGTGCGATG
776 CGGCATTGGGGTTCT-GACGATCGGGGGGGCC-----GGGGGGTGTGCGCACATGATGTGCGATG
* * *
21179459 GGTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACTTTGAGAACTCAC
835 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
21179519 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
21179584 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
21179649 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAATTTGGGACCAAAA-ATCCTTCTGAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAA
* *
21179713 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCT
195 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
21179778 TGCCCATGAAACTTCACATGAAGCCTTAAGGGACCATT-TCATGAATTTACAAGCCATAAAAATG
260 TG-CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAAAATG
*
21179842 GCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
323 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* **
21179907 GCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGGATAGG
388 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * ** *
21179972 TATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACAGTC-GTAGGATTTGTA
453 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGC-GGCAGCAAGATCGGCA
** * * * * *
21180036 GCACATAGAGGGGGACCAG-TCGATCCCCGGCTTGCACATCCTGCCCCTCTAGCTGGCTGAGCGC
516 GCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
21180100 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGCCTAAGCATACGGAG
581 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * * *
21180165 TTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGGAGCACACGCTGGGGTTGGGCATG
646 TTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * *
21180230 TGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGACCGG
711 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* *
21180295 CGGCATTGGGGTT-TCGGCGAT-GGGGGGGCCGGGAGGGGGGGTGCGAGCACATGATGTGCGATG
776 CGGCATTGGGGTTCT-GACGATCGGGGGGGCC--G-GGGGGTGTGC--GCACATGATGTGCGATG
* *
21180358 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAT
835 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
21180418 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
21180483 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * *
21180548 TGCATGCCAACAAAATTACAAGGATCTTGTCTACCACGTTAGGGG-CAAAA-ATCCTAT-C-AAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCT-TCCGAAA
*
21180609 AAAGTTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
194 AAA-TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
21180674 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATTTGAATTTACAAGCCATAAAAATG
258 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
21180739 GCATTGGCATGTAGAAATATGAGGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACGGCTT
323 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
21180804 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCAGCCGCTTGCTCGTTTTGTCGGTT
388 GCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCC-GCC-C--GCTCGTTTCGTCGGTT
* * * * * * **
21180869 AGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGCTTGTGTTAGCAAG
445 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAAG
* ** * ** * * *
21180934 ATCGGTAGCACATAGAGGAGGACTTGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGAC
509 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
21180999 CGAGCACCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAGCT
574 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* ** * * * ** *
21181064 TACGGAGCTCATTCTTAGTCTAAGATCGGATTGAACCAAGGGTTATGGCAGCAAATGCTGGGCTC
639 TACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * * * * * * *
21181129 AGGCATGTGCTGGTGCCTCATTTTTCTTTGTCGGGGCACTATCATCGGAGCATCGCCAGAGAACT
704 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * * ** *
21181194 TGACAGACGGCATTGGGG-T-T--C---C--GGTGATCGAGGGGTG-GCGCACATGATGTGCGAT
769 TGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* * *
21181249 TGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
834 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
21181310 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
21181375 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
21181440 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACCTTTCGAAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
** ** *
21181505 ATTTTACGAAAT-CTTAGACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
196 ATTTTAAAAAATCCCGA-ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
21181569 TGCCATGAAACATCATGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGC
260 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * * *
21181634 ATTGGCACACAAAAACATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGC
325 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
21181699 GCATCCCGTCTCTCTGGCCGACGTAGT----GCTCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
390 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
21181760 TACGGAGTTAATTCCCAGTCTAAGATCAGACCGGACTGAGGGTCGCGGTAGCAAGATCGGCTGCA
455 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAAGATCGGCAGCA
* * * * * *
21181825 CGCAGAGGGGGA-CCGACCGATCCACGGCATGCGCATCCC-ACCCTCTGGTCGGCTGAAG-GCCT
519 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG-AGCGCCC
* * *
21181887 GTACGCTCGTTTCGTGTGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTT
583 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *
21181952 CATTCCCAGTCTAACATCAGATCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAAGTG
648 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * * *
21182017 CTGGTGCCGCATGGTGCCGCATTTTCTTTGCCGGGGCACCCCATCGCCGGAGCATCGCCGGAGAA
713 CTGGTGCCACA---T------TTTTCTTCGTCGGGGCA--CCATCGTCGGAGCATCGTCGGAGAA
* * *
21182082 CCTGACCGGTGGCATTAGGGTTCCGACGAT---------CGGGGGGTGTGCGCACATGATGTGCG
767 CCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
21182138 ATTGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
832 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
21182201 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTAAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
21182266 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTCGCTGAATTGTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
21182331 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAATTTGGGACCAAAA-ATCCTTCTGAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAA
* * *
21182395 AATTTAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTAAAAAATAGAAAACGAGTCGTCT
195 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
21182460 TGCCATGAAACTTCACATGAAGCCTTAAGGGACCATT-TCATGAATTTACAAGCCATAAAAATGG
260 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAAAATGG
* *
21182524 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTG
324 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * *
21182589 CGCATCCTGTCTCTCTGGCCGGTGTAATGCCCGCCCGCCCGCCCGCCCGCTTATTTCGTCAGTTG
389 CGCATCCCGTCTCTCTGGCCGACGT-A-G--TGCCCGCCCGCCCGCTCG----TTTCGTCGGTTG
** * * *
21182654 GCTTAGGCATACGGAGTTCATTCGTAGTATAAGATCAAACCGGAGTGAGGGTTGTGGCAGCAAGA
446 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAAGA
*** * * *
21182719 TCGGCAGCACGCAGAGGCAAACCCGATCGATCCCCGACTTGCGCATCCCGTCCCTTTGGCCGGCT
510 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
21182784 GAGCGCCCGCACGCTCATTTCTTGGGTTAACTTAGGCATACGGAGTTCATTCCGAGTCTAAGGAT
575 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * * * * *
21182849 ATGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGATCGAGGGTTGTGACAGCACAAGTTGGGCTC
640 ACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTC
* * *
21182913 GGGCATGTGCTGGTGCCATATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAGAACA
704 GGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACC
* * *
21182978 TGACCGGCGGCATTGGGGTT-TCGGCAATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTG
769 TGACCGGCGGCATTGGGGTTCT-GACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
* * *
21183042 ATGGGGGCTGATACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
832 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
21183105 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTATGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
21183170 GGAGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
21183235 TGCATGCTAACTAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-ATCCTTTC-AAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAAA
* *
21183298 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCT
195 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
21183363 TGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGG
260 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
21183428 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
325 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
21183493 GCATCCCGTCTCTCTTGCCGACGTAGTGCCCGCCTGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
390 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* ** * * * * * *
21183558 TACAGAGTTTGTTCCCAATCTAAGATCAGATCGGACCGA--G--G-GGTAGCAGGATTGGCAGCA
455 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAAGATCGGCAGCA
* * * * * * *
21183618 CGTAGAGGGGGACCCGACCGATCCCTGGCTTGCGTATCCTGCCCCTCTGGCTGGCTGAACGCCCG
519 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
21183683 CACGCTCATTTCGTGGGTTGACTTAGCCATACGGAGCTCATT-CCAGTCTAAGCATAGGGAGTTC
584 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * *
21183747 ATTCCCAGTCTAAGATC-GAACTAGACCGAGGGTTGCGGCAACACATGTTGGGCTCGGGCATGTG
649 ATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * *
21183811 CTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCGACG
713 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCG
* * * * ** *
21183876 GTATTAGGGTT-TCGACGATCGAGGGGGCCAGGGGGTACGAGCACATGATGTGCGATGGGTGCTG
778 GCATTGGGGTTCT-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
21183940 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
842 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
21183993 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
21184058 GGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAGCTGAATGTTTTTT
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTT
* * *
21184123 -TGCATGCCAAAAAAAATACAAGGATCACGTCTACGAAGTTTGGGGCCAAAACTCCTTCC-AAAA
130 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAA
** * * *
21184186 TTTTTTTAAAAAATCCCGAACCG-AGAAAAGTTTCTAAAATTGTGAAAAATAGAAAATGAGTCGT
195 -AATTTTAAAAAATCCCGAACCGTA-AAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * * * *
21184250 CTTGCCCTGAAACTTCAAGTGAAGGCTTAAGGGACCATTATATGAATTTGCAGGCCATAAAAATG
258 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
21184315 GCATTGGCA-GCAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
323 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
21184379 ACGCATCCCATCTCTCTGGCCGGA-GTAGTGCCCGCCCGCCCACCCGCCTGCTCGTTTCGTCGGT
388 GCGCATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCG------C-CC-GCTCGTTTCGTCGGT
* * * * * *
21184443 TGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGATCAGACTAAGGCTTGCGGCA-AAA
444 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAA
** * * *
21184507 GGATCGATAGCATGCAGAGGGGGACCCGACCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCG
508 -GATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * ** * * *
21184572 ACTGAGCGCCTGTGCGCTCATTTCGTGGGTTGACCTAGGTATACGGAGTTCATTCCCAGTCTAAG
572 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
21184637 CATACGAAGCTCATTCCTAGTCTAAGATTGTATCAGACCGAGGGTTGCGGCAGCACATGCTGCGC
637 CATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* **
21184702 TCAGGCATGTGCTGGTGCCTTATTTTTCTTCGTCGGGGCA-C--CGT-----CA-C--CGGAGAA
702 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * * *
21184756 CCTGACCGACGGCATTGGGGTTTTGGCGAT---------CGGGGGGTGTACGCACATGATGTGCG
767 CCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* * *
21184812 ATTGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCATCAAACATCGAGAACTCAC
832 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
21184875 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
21184940 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATATTTTTT
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTT
* * * *
21185005 -TGCATGCCAACAAAAATACAAGGATCACGCCTACCAACTTTCGGGCTAAAA-ATCCTTCC--AA
130 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTCCGAAA
* *
21185066 AAATTTTAAAAAATCCCGAACC--ACAAAAGTTTTGAAAAATCGTGAAAAATAGAAAACGAGTCA
194 AAATTTTAAAAAATCCCGAACCGTA-AAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
21185129 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
257 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
*
21185194 GGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
322 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
21185259 TGCGCATCCCGTCTCTCTGGCCGGA-GTAATGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
387 TGCGCATCCCGTCTCTCTGGCC-GACGT-A-----G--TGCCCGCCCGCCCGCTCGTTTCGTCGG
** * **
21185323 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGATGGAGGGTTGTC-ATAGC
443 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-GAGGGTTG-CGGCAGC
* * * * * * * * ***
21185387 AGGATCAGCAACATGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGTATCTTACCCCTCTGGCC
506 AAGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* **
21185452 GACTGAGCGCCCTG-ACGCTCGTTTCGTGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTA
571 GGCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
21185516 AG-AT-C--A----A-----A--C------C--A---GATCGAGGGTTACGGCAGCACATGCTGG
635 AGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGG
21185555 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
700 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
21185620 AACCTGACCGGCGGCACTGGGGTTCCGACGATCGGGGGGGCTGGAGGGGTTGTGCGCACATGATG
765 AACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGG-GGGG-TGTGCGCACATGATG
* *
21185685 TGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCCAGAACTC
828 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
21185750 AC
893 AC
* * * *
21185752 ACCCCTTTTAAGAGCATTTGAAATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
21185817 -GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTT
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
21185880 TAGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTAGGGACAAAACTCCTTCCAAAAA
131 T-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAA
* *
21185945 AATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTAC
195 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT-C
*
21186010 -TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGG
259 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
21186074 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTT
324 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
21186139 CGGATCCCGTCTCTCTGGGCGGCATAGTGCCTGCCCGCCCGTTCGTTTCGTCGGTTGGCTTAGGC
389 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
** * * *
21186204 ATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGAGGCTGCAAGATCGGCAGC
454 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAAGATCGGCAGC
* * * * * * **
21186269 ACGCAGAGGGGGACCTGACCGATCCTCGACTTACGCATCCCGTCCCTCTGGATGGCTGAGCGCCC
518 ACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
* * *
21186334 GTACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTT
583 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * *
21186399 CATTCCCTGTCTAAGATC-AAACTGGACCGAGGCTT-CTGGCAGCACATGCTGGGCTCGGGCATT
648 CATTCCCAGTCTAAGATCGGATC-GGACCGAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATG
* * * *
21186462 TGCTGGTGCCACAGTTTTCTTCATCGAGG---CA----C----CATCGTCGGAGAACCTGACCAG
711 TGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
* * * *
21186516 CGGTATTGGGGTTCCGACGATCGGAGGGGCCGGGAGGGGAGTGCGCACATGATGTGCGATGGGTG
776 CGGCATTGGGGTTCTGACGATCGGGGGGGCC-GG-GGGGTGTGCGCACATGATGTGCGATGGGTG
* * * *
21186581 CTGGTACTAGGCCCTTATATTGGGCCCCTAT-CTTCATCAAACCTCGAGAACTGAC
839 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
21186636 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAATGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
21186701 GGGGACATTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGAGTTTTTAG-TGAATTTTTTTA
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * ** * * * *
21186765 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAG-TTAGGGAAAAAACTCTTTTCAAAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
* *
21186829 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
196 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * * **
21186894 GACATGAAACTTCACGTGAAGGCTTAAGGGACCAATGTATGAATTTACAAGCAATAAAAATGTTA
261 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
21186959 TTGGCACGTAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTGCA
326 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
21187024 CATCCCGCCTCTCAGGCC-AGCGTAGTGCCCGCCAGCCCGCTCGCCCTCTCATTTCATCGGTTGG
391 CATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCTCG--------TTTCGTCGGTTGG
* * * * * **
21187088 CTTAGGCATTCAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCAAGGGTT----------G--
447 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAAGAT
* * * * **
21187141 CGGCAGCACGCAGAGGGGGACCTGA-CTGATCCCTGGCTTGTGCATCCCGCCCCTCTGGTCAACT
511 CGGCAGCACGCAGAGGGGGACCCGATC-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * **
21187205 GAGCGCCTGCACGTTCTTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
575 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * *
21187270 ACAGAGTTCTTTCCCAGTCT-A-A---GATCGGA---A----T---G--G---A--CTGAG-T--
640 ACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* *
21187310 -G--T-TGC--G-G---CATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCT
705 GGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCT
* * * * *
21187365 GACCGACGGCATTGGGCTTCCGACGATCGGGGGGGCCGGGGGGTCTACGCACATGATGTGCGATG
770 GACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATG
* * *
21187430 CGTGCTGCTACTT-G----------GG--------CCC-CATCAAACCTTGAGAACTCAC
835 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
21187470 ACCCCCTTAAAGATCAATTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
21187535 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
21187600 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAACCTCCTTCCGAAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
* * ** * *
21187665 ATTTTAAAATATCCCGAACTGCCAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
196 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
21187730 GCCATGAAACTTCACGTGAAGGCTTAAGGG------G-A--CA-TT----G---T----ATGGCA
261 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
21187774 TTGGCATGCAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
326 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
21187839 CATCCCGTCTCTTTGGTCGACGCAGTGCCCGCCCGCCCGCAT-GTTTCGTCGGTTCGCTTAAGCA
391 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC-TCGTTTCGTCGGTTGGCTTAGGCA
* ** * *
21187903 TACGGAGTTCATTCCCAGTCTAAGTTTGGACCGGGTCGAGGGTTGCGGCAGCAGGATCGGCAGCA
455 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT-GAGGGTTGCGGCAGCAAGATCGGCAGCA
* * ** * * * *
21187968 CACA-AAGGGGACGTGATCGATCCCTGGCTTGCGCATCCCTCCCCTTTGGCCGGCTGAGCGTCCG
519 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * *
21188032 CGCGCTCGTTTCGTGGGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCTAAGCATACAGAGTTC
584 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* ** *
21188097 ATTCCCAGTCTAAGCATACGGAGTTCACCGGATCGGACCGGGGGTTATGGTAGCACATGCTGGGC
649 ATTCCCAGTCT----A-A--GA--T---CGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * *
21188162 TCGGCCATGTGCTGGTGCCGCATTTTTCTTCG-C-TGG-AGCATCGTCGGAGCATCGCCGGAGAA
702 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* *
21188224 CCTGACCGGTGGCATTGGGGTT-TCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
767 CCTGACCGGCGGCATTGGGGTTCT-GACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
21188288 GATGGGTGGTGGTACTTGGCCCTTATAGTGGCCCCCTATCCTTCATCAAACCTTGAGAACTCAC
831 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
21188352 ACCCCCTTAAAGAGCATTTGAGATTTTACGGGCTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
21188417 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
21188482 TGCGTGCCAA-AAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
131 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
* ** * *
21188546 ATTTTAAAAAATCCCAAACC-TCAAAAAGTTTTGAATATCGTGAAAAATAGAAAACGAGTCATCT
196 ATTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
21188610 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
260 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * *
21188675 ATTGGAATGCAGAAATATGAAGATGCACCTAAACCCACCTACCACCCCATCGATCCATGGCTTGC
325 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * ** * * *
21188740 GCATCTCGTCTCTCTGGTCGGTGTAATCCCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCA
390 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* ** * ** * *
21188805 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTACGGCAATAGGATCGACAGCA
455 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-TGAGGGTTGCGGCAGCAAGATCGGCAGCA
* * * *
21188870 CGCAGAGGGGGACCCGA-CTATCCCCGGCTTGTGCATCCCGCCCTTCTGGCCGACTGA-CGGCCC
519 CGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC-GCCC
*
21188933 GCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
583 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * * * *
21188998 CATTCCTAGTCTAAGATCGGATCAGACTGAGGGTTTCGACAGCACATGCTGGGCTCAGGCATGTG
648 CATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* * * *
21189063 CTGGTGCCACATTTTTCTACCTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCG
713 CTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCG
* * * * * *
21189128 GCATTGGGGTTCCGGCGAT-AGGGGGGCC-GGGGG-GTGCGCACATGATGTCCGATAGGTGTTGG
778 GCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* *
21189190 TACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCAC
843 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
21189242 ACCCCATTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGGCACTAAAGTGTCTGAAAT
1 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
21189307 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTG-ATTTTTTTG
66 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT-
* *
21189371 GTGCATG-CAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCGAAAA
130 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAA
* * * * *
21189435 ATTTTTAAAAAATCCCG-ACCTGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTTGTC
195 AATTTTAAAAAATCCCGAACC-GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
21189499 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGG
259 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
21189564 CATTGGCATGCAGAAACATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
324 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
21189629 CGCATCTCGTCTCTCTGGCCGATGTAGT----GCCTGCCCGCTCATTTCGTCGGTTGGCTTAGGC
389 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * *
21189690 ATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGA
454 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA
21189726 ACCGAGGGTT
Statistics
Matches: 16755, Mismatches: 1844, Indels: 1117
0.85 0.09 0.06
Matches are distributed among these distances:
807 52 0.00
815 96 0.01
816 2 0.00
817 1 0.00
818 116 0.01
819 13 0.00
822 1 0.00
824 1 0.00
826 2 0.00
827 2 0.00
829 1 0.00
830 1 0.00
834 127 0.01
835 56 0.00
836 105 0.01
842 3 0.00
844 15 0.00
845 1 0.00
847 4 0.00
848 1 0.00
850 4 0.00
851 2 0.00
852 5 0.00
853 35 0.00
854 2 0.00
855 112 0.01
856 2 0.00
857 4 0.00
858 5 0.00
859 4 0.00
861 1 0.00
862 94 0.01
863 5 0.00
864 3 0.00
865 12 0.00
866 33 0.00
867 2 0.00
868 106 0.01
869 1 0.00
870 187 0.01
871 4 0.00
872 2 0.00
873 5 0.00
874 12 0.00
875 9 0.00
876 170 0.01
877 721 0.04
878 576 0.03
879 600 0.04
880 378 0.02
881 485 0.03
882 420 0.03
883 331 0.02
884 126 0.01
885 167 0.01
886 102 0.01
887 53 0.00
888 365 0.02
889 597 0.04
890 770 0.05
891 941 0.06
892 805 0.05
893 296 0.02
894 165 0.01
895 305 0.02
896 1123 0.07
897 448 0.03
898 111 0.01
899 1587 0.09
900 401 0.02
901 508 0.03
902 740 0.04
903 310 0.02
904 305 0.02
905 227 0.01
906 215 0.01
907 329 0.02
908 9 0.00
909 5 0.00
910 11 0.00
911 204 0.01
912 217 0.01
913 50 0.00
914 1 0.00
916 5 0.00
917 1 0.00
919 1 0.00
920 82 0.00
921 6 0.00
922 235 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (894 bp):
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATGAGGGTTGCGGCAGCAAGATCGGCAGCACG
CAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
TCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTG
GTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCA
TTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
Found at i:21172145 original size:26 final size:26
Alignment explanation
Indices: 21172108--21172160 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21172098 GTTGACTTAG
*
21172108 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21172134 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21172160 G
1 G
21172161 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21173908 original size:25 final size:26
Alignment explanation
Indices: 21173879--21173930 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
21173869 GTTGACTTAG
21173879 GCATACAGAGTTCATT-CCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21173904 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21173930 G
1 G
21173931 ATCGAACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 15 0.60
26 10 0.40
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21174937 original size:17 final size:17
Alignment explanation
Indices: 21174915--21174956 Score: 57
Period size: 17 Copynumber: 2.5 Consensus size: 17
21174905 AGAGAACCTG
21174915 ACCGGCGACATTAGGGT
1 ACCGGCGACATTAGGGT
* *
21174932 ACCGGCGGCATTGGGGT
1 ACCGGCGACATTAGGGT
*
21174949 TCCGGCGA
1 ACCGGCGA
21174957 TCAGGGGGCC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.17, C:0.26, G:0.40, T:0.17
Consensus pattern (17 bp):
ACCGGCGACATTAGGGT
Found at i:21176589 original size:26 final size:26
Alignment explanation
Indices: 21176553--21176605 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21176543 GATGACTTAG
21176553 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21176579 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21176605 G
1 G
21176606 ATCGGATGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21177494 original size:26 final size:26
Alignment explanation
Indices: 21177457--21177506 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
21177447 GACTTAGGCA
*
21177457 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGCTCATTCCCAGTCTAAGCT
**
21177483 TACGGAGCTCATTCTTAGTCTAAG
1 TACGGAGCTCATTCCCAGTCTAAG
21177507 ATCGGATTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGCTCATTCCCAGTCTAAGCT
Found at i:21178370 original size:26 final size:26
Alignment explanation
Indices: 21178334--21178392 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
21178324 GTTGACTTAG
21178334 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21178360 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21178386 -CAT-CAGA
1 GCATACAGA
21178393 TCGGACCGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 25 0.81
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21179266 original size:26 final size:26
Alignment explanation
Indices: 21179230--21179282 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21179220 GTTGACTTAG
*
21179230 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
21179256 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
21179282 G
1 G
21179283 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:21180165 original size:26 final size:26
Alignment explanation
Indices: 21180129--21180181 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21180119 GTTGACTTAG
*
21180129 GCATATGGAGTTCATTCCCAGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
21180155 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
21180181 G
1 G
21180182 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:21181075 original size:26 final size:26
Alignment explanation
Indices: 21181038--21181087 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
21181028 GACATAGGCA
*
21181038 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGCTCATTCCCAGTCTAAGCT
**
21181064 TACGGAGCTCATTCTTAGTCTAAG
1 TACGGAGCTCATTCCCAGTCTAAG
21181088 ATCGGATTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.32
Consensus pattern (26 bp):
TACGGAGCTCATTCCCAGTCTAAGCT
Found at i:21181950 original size:26 final size:26
Alignment explanation
Indices: 21181914--21181972 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
21181904 GTTGACTTAG
21181914 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21181940 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21181966 -CAT-CAGA
1 GCATACAGA
21181973 TCGGACCGAG
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 25 0.81
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21183748 original size:25 final size:26
Alignment explanation
Indices: 21183710--21183760 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 26
21183700 TTGACTTAGC
21183710 CATACGGAGCTCATT-CCAGTCTAAG
1 CATACGGAGCTCATTCCCAGTCTAAG
* *
21183735 CATAGGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGCTCATTCCCAGTCTAAG
21183761 ATCGAACTAG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.57
26 10 0.43
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.25
Consensus pattern (26 bp):
CATACGGAGCTCATTCCCAGTCTAAG
Found at i:21184650 original size:26 final size:26
Alignment explanation
Indices: 21184612--21184662 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21184602 TGACCTAGGT
* *
21184612 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGAAGCTCATTCCCAGTCTAAGC
*
21184638 ATACGAAGCTCATTCCTAGTCTAAG
1 ATACGAAGCTCATTCCCAGTCTAAG
21184663 ATTGTATCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
ATACGAAGCTCATTCCCAGTCTAAGC
Found at i:21186390 original size:26 final size:26
Alignment explanation
Indices: 21186361--21186413 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21186351 GTTGACTTAG
*
21186361 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21186387 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21186413 G
1 G
21186414 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21187276 original size:26 final size:26
Alignment explanation
Indices: 21187240--21187292 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21187230 GTTGACTTAG
*
21187240 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21187266 GCATACAGAGTTCTTTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21187292 G
1 G
21187293 ATCGGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21188094 original size:26 final size:26
Alignment explanation
Indices: 21188058--21188123 Score: 114
Period size: 26 Copynumber: 2.5 Consensus size: 26
21188048 GTTGACTTAG
*
21188058 GCATGCAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21188084 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21188110 GCATACGGAGTTCA
1 GCATACAGAGTTCA
21188124 CCGGATCGGA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 38 1.00
ACGTcount: A:0.29, C:0.26, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21188996 original size:26 final size:26
Alignment explanation
Indices: 21188960--21189012 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21188950 GTTGACTTAG
21188960 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21188986 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21189012 G
1 G
21189013 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21190914 original size:717 final size:712
Alignment explanation
Indices: 21188986--21191874 Score: 3966
Period size: 717 Copynumber: 4.1 Consensus size: 712
21188976 CCCAGTCTAA
* * * *
21188986 GCATACGGAGTTCATTCCTAGTCTAAGATCGGA-TCAGACTGAGGGTTTCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAGACCGAGGGTTGCGACAGCACATGCTGG
* * * * * *
21189050 GCTCAGGCATGTGCTGGTGCCACATTTTTCTACCTCGGGGCACCATCGCCGGAGCATCGCCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCACCGGAG
* *
21189115 AACCTGACCGGCGGCATTGGGGTTCCGGCGAT-AGGGGGGCC-GGGGGGTGCGCACATGATGTCC
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGCGCACATGATGTGC
* * *
21189178 GATAGGTGTTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* * *
21189243 CC-CCATTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGGCACTAAAGTGTCTGAAAT
260 CCACC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
21189307 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGATTTTTTTGG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGG
*
21189372 TGCATGCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCGAAAAAT
389 TGCATGCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCGAAAAAA
* *
21189437 TTTTAAAAAATCCCGACCTGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTTGTCTTG
454 TTTTAAAAAATCCCGACCTGCAAAAAGTTTCAAAAATCATGAAAAA-GAAAAACGAGTCGTCTTG
*
21189502 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
21189567 TGGCATGCAGAAACATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGC
583 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * *
21189632 ATCTCGTCTCTCTGGCCGATGTAGTGCCTGCCCG--C-T---CA---TTTCGTCGGTTGGCTTAG
648 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTTCCGCATCGTTTCGTCGGTTGGCTTAG
* * * *
21189688 GCATATGAAGTTCATTCCCAGTCTAAGATCGGACCG-GAACCGAGGGTTACGACAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAG-ACCGAGGGTTGCGACAGCACATGCTG
* * * * *
21189752 GGTTCGGGCATGCGTTGGTGCCGAATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACCGGA
65 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCACCGGA
* * *
21189817 GAACCCGACCTGTA--GTATTGGGGTTCCGGTGATCA-GGGGGCCGGGGGGTGTGCGCACATGAT
129 GAACCTGACC-G-ACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGG-GTGCGCACATGAT
*
21189879 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
191 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
*
21189944 CACA-CACCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
256 CACACCA-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
21190008 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTGATTTTT
320 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTT
*
21190073 TTGGTGCATGCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTGGAA
385 TTGGTGCATGCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCGAA
* * * * *
21190138 ACATTTTTAAAAAATCCCGACCTGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCAT
450 AAAATTTTAAAAAATCCCGACCTGCAAAAAGTTTCAAAAATCATGAAAAAGA-AAAACGAGTCGT
21190203 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** * **
21190268 GCATTGGCATGCAGAAATATGAAGATATGCCTAAACCCATGTACCTCTTTATCGATCCACGGCTT
579 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
21190333 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCTTCCGCATGCTTGTTTCGTTGATT
644 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTTCCGCAT-C--GTTTCGTCGGTT
21190398 GGCTTAG
706 GGCTTAG
* *
21190405 GCATACAGAGTTCATTCCCAGTCTAAGAT-GTGACTGA-ACCAAGGGTTGCGACAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCG-GACTGAGACCGAGGGTTGCGACAGCACATGCTG
* *** *
21190468 GGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCAAAGCACCATCTCCAGAGCATCACCGGA
65 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCT-CGGAGCATCACCGGA
* * **
21190533 GAACCTGACCGACGGCATTGGGGTTCCGGCGATAAGAGGGGCCGGGGGCGGTTTGCACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGG-GGTGCGCACATGATGT
*
21190598 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* * * *
21190663 CACCACCTTAAAGAGCATTTGGGATTTCACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
21190728 TGGGGACAGTTTTTTCAAATGGTCACAAAATCCTGTACACTTTGAGTTTTTAGCTGAATTTGTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTT
* * * *
21190793 -GTGCATGCCAACAAAAATACAAGGATCACGTTTACCAAGTTTAGGGCCAAAAC-TCTTTCCGAA
387 GGTGCATG-CAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTT-CGAA
* * *
21190856 AAAATTTTAAGAAATCCCGAACC-ACAAAAAGTTTCGAAAATCATGAAAAAGAAAAACGAGTCGT
450 AAAATTTTAAAAAATCCCG-ACCTGCAAAAAGTTTCAAAAATCATGAAAAAGAAAAACGAGTCGT
*
21190920 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAGGAATTTACAAGCCATAAAAATG
514 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
21190985 GCATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCACCTTATTGATCCACGGCTT
579 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
21191050 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCTTCCGCCCGCTTGTTTCGTGGGTT
644 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTTCCG--C-ATCGTTTCGTCGGTT
*
21191115 GACTTAG
706 GGCTTAG
* * * *
21191122 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACT-AGACCGAGGGTTGCGGCAGGATATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAGACCGAGGGTTGCGACAGCACATGCTGG
* * *
21191186 GCTCTGGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCA--TC---G-----CCGGAGA
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCACCGGAGA
* * * * *
21191241 ACCTGACCGGCGACATTTGGGTTCCGGCGATCGGGGGGGCCGGGGGTGGTGTGCGCATATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCC-GGGG-GG-GTGCGCACATGATGT
**
21191306 GCGATGGGTGCTGGTACTTGGTTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
21191371 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
21191436 TGGGGACACTATTTTCAAATGTTCACAAAATTTTGTACACTTTGAGTTTTTAGCTGGATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-GATTTTTTT
** ** * *
21191501 -GTGCATGCCAACAAAAATGCAAGGATCACGTCCGCCAAGTTTGGGGACAAAA-ATCCTTTCAAA
387 GGTGCATG-CAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACA-CCTTTCGAA
* * * * * *
21191564 AAAATTTTAAAAAATCTCAAACTGTAAAAAGTTTCAAAAATCGTGAAGAATAG-AAAACGAGTCC
450 AAAATTTTAAAAAATCCCGACCTGCAAAAAGTTTCAAAAATCATGAA-AA-AGAAAAACGAGTCG
*
21191628 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAAT
513 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
21191693 GGCATTGGCATGCAAAAATATGAAGATGTGCCTATACCCACCTACCACCCTATCGATCCACGACT
578 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * **
21191758 TGTGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGTCCGCCCGCA-CGTTTCGTCGGTTGG
643 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTTCCGCATCGTTTCGTCGGTTGG
21191822 CTTAG
708 CTTAG
* * * *
21191827 GCATACGGAGATCATTCCCAGTATAAGATCGAACCG-GACCGAGGGTTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAGACCGAGGGTTG
21191875 TGGCAGTAAG
Statistics
Matches: 1954, Mismatches: 184, Indels: 95
0.88 0.08 0.04
Matches are distributed among these distances:
702 31 0.02
703 112 0.06
704 9 0.00
705 531 0.27
706 44 0.02
707 9 0.00
708 278 0.14
709 181 0.09
710 2 0.00
711 3 0.00
714 2 0.00
715 3 0.00
716 107 0.05
717 540 0.28
718 97 0.05
719 4 0.00
720 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (712 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGAGACCGAGGGTTGCGACAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCTCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCAGGGGGGCCGGGGGGGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAC
CACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTGGTG
CATGCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACCTTTCGAAAAAATT
TTAAAAAATCCCGACCTGCAAAAAGTTTCAAAAATCATGAAAAAGAAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCTTCCGCATCGTTTCGTCGGTTGGCTTAG
Found at i:21192016 original size:26 final size:26
Alignment explanation
Indices: 21191986--21192038 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21191976 GTTGACCTAG
*
21191986 GCATACGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21192012 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21192038 G
1 G
21192039 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21192909 original size:26 final size:26
Alignment explanation
Indices: 21192880--21192932 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21192870 GTTGAGTTAG
*
21192880 GCATACGGAGTTTATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
21192906 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21192932 G
1 G
21192933 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21194253 original size:902 final size:898
Alignment explanation
Indices: 21191122--21196859 Score: 7083
Period size: 902 Copynumber: 6.5 Consensus size: 898
21191112 GTTGACTTAG
** * *
21191122 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTAGACCGAGGGTTGCGGCAGGATATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* *
21191186 GCTCT-GGCATGTGCTGGTGCTGCATTTTTCTTCGCCGGGGCACCAT---C---GC--CG--GAG
65 GCT-TGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGCCGAG
* * *
21191240 AACCTGACCGGCGACATTTGGGTTCCGGCGATCGGGGGGGCCGGGGGTGGTGTGCGCATATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATG
** *
21191305 TGCGATGGGTGCTGGTACTTGGTTCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
21191370 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
21191435 ATGGGGACACTATTTTCAAATGTTCACAAAATTTTGTACACTTTGAGTTTTTAGCTGGATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** * * *
21191500 TGTGCATGCCAACAAAAATGCAAGGATCACGTCCGCCAAGTTTGGGGACAAAAATCCTTTCAAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * * *
21191565 AAATTTTAAAAAATCTCAAACTGTAAAAAGTTTCAAAAATCGTGAAGAATAGAAAACGAGTCCTC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
21191630 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAGAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
21191695 CATTGGCATGCAAAAATATGAAGATGTGCCTATACCCACCTACCACCCTATCGATCCACGACTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
21191760 TGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG--T-CCGCCCGCACGTTTCGTCGGTTGG
648 CGCATCCCGTCTCTCCGGCCGGCGTAGTGCCCGCCCGCCTCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
21191822 CTTAGGCATACGGAGATCATTCCCAGTATAAGATCGAACCGGACCGAGGGTTGTGGCAGTAAGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-ATCGGACCGAGGGTTGTGGCAGCAGGAT
* * ** * * *
21191887 AAGA-AGCACGCAAAGGGTTACCCAGTCGATCCCCGGCTTGCGCATTCCGCCCCTCTGGCCGGTT
777 -CGACAGCACG-AGAGGGGGACCC-GTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG-CGGCT
* * * *
21191951 GAGCGCCCGCAGGCTCGTTTCATGGGTTGACCTAGGCATACGGAGTTCATTCCCATTCTAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * *
21192012 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGACCGAGGGTTATGGCAGTACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
*
21192076 GCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCGCC-GAGGCACCATCGCC---G--TCG--GAG
65 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAG-GGCACCATCGCCGGAGCATCGCCGAG
* *
21192132 AACCTGACCGGCGGCATTGGGGTTTCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATG
129 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
* *
21192197 TGTGATGGGTACTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
21192261 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
21192326 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
21192391 TGTGCATGCCAAAAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * * *
21192456 GAATTTGAAAAAATCAT-GAACCATAAAAAGTTTCAAAAATCGTGAAAAAAAGAAAACGAGTCGT
453 AAATTTTAAAAAATC-TCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGT
21192520 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** **
21192585 GCATTGGCACACAGAAATATGAACTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
21192650 GCGCATCCCGTCTC-CCTGGCCGGTGTAGTGCCCGCCCGCCCACCCGCCCGCTCGTTTCGTCGGT
647 GCGCATCCCGTCTCTCC-GGCCGGCGTAGTGCCCGCCCG-CCTCCCGCCCGCTCGTTTCGTCGGT
* * * * * * * *
21192714 TGGCTTAGGCATATGGAGTTCATTCCCAGTCCAAGATCAAACTGAACTGAGGGTTGCGGTAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGATC-GGACCGAGGGTTGTGGCAGCAG
* * * * *
21192779 GATCGGCAGCACGAAGAGGGGGACCAGCCGATCCCTAGCTTGTGCATCCCGCCCCTCTGGCCGGC
774 GATCGACAGCACG-AGAGGGGGACCCGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG-CGGC
* * * *
21192844 TAAGCGCCCGCACGCTCGTTTCGTGGGTTGAGTTAGGCATACGGAGTTTATTCCCAATCTAA
837 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
21192906 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
21192971 CTTGACCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATTGCCGGAGCATTGCCAGTGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGCC-GAGA
* * * * * *
21193036 ACCTGATCGACGGCATTGGGGTTCCGACGATC-GGGGAGCC-GGGGGGTGTACACACATGATGTG
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
21193099 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
21193164 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** * *
21193229 GGGGATGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT-TATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
21193293 TGCATGCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTGGGTCCAACACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAA
* * * * *
21193358 ATTTTAAAAAATCAT-GAACCGCAAAGAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTTGTCT
455 ATTTTAAAAAATC-TCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
21193422 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * *
21193487 ATTGGCATGCAGAAATATAAAGATGTGACTAAACCAACCTACCACCCTATCGATCCATGGCTTGC
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
21193552 GCATCCCGTCTCTCCGGTCAGTGTGGTGCCCGCCCGCCTGCCCACCCGCTCGTTTTGTCGGTTGT
649 GCATCCCGTCTCTCCGGCCGGCGTAGTGCCCGCCCGCCT-CCCGCCCGCTCGTTTCGTCGGTTG-
* *
21193617 G-TTAGCCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTTGCAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTTGTGGCAGCAGGA
* * *
21193681 TCGACAGCACGTAGAGGGGGACCCGATCGATCCCTGGCTTGCACATCCCACCCCTCTGGTCGGTT
776 TCGACAGCACG-AGAGGGGGACCCG-TCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG-CGGCT
* * *
21193746 GAGCACCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAA
838 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * ** * *
21193807 GCATACAAAAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGTAGCACATGCTAG
1 GCATAC-GGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
21193872 GCTTGGGCATGTGATGGTGCCGCATTTTTCTTCACCAGGGCACCATCGCCGAAGCATCACCGAGA
65 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGCCGAGA
* * * *
21193937 ACCTGACCGGCGGCATTGGTGTTCCGGTGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATATA
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
21194001 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
21194066 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGATGCTAGTAGCCATTAAAGTGTCTGTAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
21194131 GGGGACACGTTTTTCAAATGGTCACAAAGTCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTT-
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
21194195 TGCATGCCAACAAAAATACAAGGATCACAG-CTGCCAAGCTTGGGGCCAAAAATCCTTCCGAAAA
390 TGCATGCCAACAAAAATACAAGGATCAC-GTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAA
* *
21194259 AATTTTAAAAAAATCTCGAACCGT-AAAAGTTTTGAAAATCGTGAAAAATGGAAAACGAGTCGTC
454 AATTTT-AAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
21194323 TTGCCATAAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
21194388 CATTGGCATATAAAAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCATGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * *
21194453 CGCATCTCGTCTCTCTAGCCGGCGTAGTGCCCGCTCGGCCACCCCGGCCCGCTCGTTTCATCGGT
648 CGCATCCCGTCTCTCCGGCCGGCGTAGTGCCCGC-CCGCC-TCCC-GCCCGCTCGTTTCGTCGGT
* * * **
21194518 TGGCTTAGGCATACAGAGTTAATTCCCAGTCTAAGATCGGATTGGATTGAGGGTTGTGGCAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTTGTGGCAGCAG
** * * * *
21194583 GAAGGGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGGTTTGCACATCCCGCCCCTCTGGCTGG
774 GATCGACAGCACG-AGAGGGGGACCC-GTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGC-GG
21194648 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
21194711 GCATACGGAGTTAATTCCCAGTCTAAAATCAGATCGGACCGAGGGTTACGGCAGCACATGCT---
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
21194773 C--AGGCATGTGTTGGTGCCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGTCAGAGA
66 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCG-CCGAGA
* * * ** *
21194836 ACCTAACCGGCGGCATTGGGGTTCCAGTGATCGGGGGGGCCGGGGCATGTGTGCACACATGATGT
130 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG-GGGTGTGCGCACATGATGT
* **
21194901 GCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACGACGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
21194966 AAGCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
21195031 TGGGGACACTTTTTTCAAATGGTCATAAAATCTTGTACACATCGAGTTTTTTGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** * * *
21195096 GTGCATGCCAAAAAAGAATAAAAGGATCATGTCTACCATTTTTAGGGCCAAAACTCCTTTCGAAA
389 GTGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAA
* * * * * * *
21195161 AAATTTTAAAAAATCCCCAACCGCAAAATGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATT
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
21195226 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
21195291 CATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCACACGGCTT
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC-CACGGCTT
* *
21195356 GCGCAT-CCGTCT-T-CTG--TGCGTAGTGCCCGCCCG-C-CCC-CCCGCTCTGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCCGGCCGGCGTAGTGCCCGCCCGCCTCCCGCCCGCTC-GTTTCGTCGGTT
* * * *
21195413 GGC-TAGGCATACAG-GTTCA-T-CCAGTCT-A-AT---TTGGA-CGA-GG-T-TGGTAGTAGCG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGATCGGACCGAGGGTTGTGGCAGCAG-G
** * *
21195465 ATCGA-AG-AC-AGA-GGGGA-CCG-CGATCCC-GG--TGCGCA---AACCTCT-TTGC-GCTGA
775 ATCGACAGCACGAGAGGGGGACCCGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCGGCTGA
* * * *
21195516 GAG-CCGCACGCTCATTT--T-GGTTAAC-TAGGCATAC-GAGTTC-TT-CCAGTCTTA
840 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** * * * * *
21195567 GCATATGGAGTTTATT-CCA-TC-CAGATCAGATCTAATCGAGGGTTTACAGTAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGG-TTGCGGCAGCACATGCTGG
* * * * * * *
21195629 GCTCT-GACATGTGCTGGTGGCAGGCATTTTTCTTTCACCGGGGTACCATCGTCAGGGCGCATCG
65 GCT-TGGGCATGTGCTGGT-GC-CGCATTTTTC-TTCGCCAGGGCACCATCG-C-CGGAGCATCG
* ** * * *
21195693 CCGGAGAACCTGGACCGACGATAAATAGGGTTCCAGTG-GATC-GGGGGG-CTGGGGGGTGTGCG
124 CC-GAGAACCT-GACCGGCG-GCATTGGGGTTCC-G-GCGATCGGGGGGGCCGGGGGGGTGTGCG
* *
21195755 TACATGATGTTGGCGATGCGGTGCTGGTACTTGGCCCTTATATTGG-CCCATATCCCTCATCAAA
184 CACATGATG-T-GCGATG-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
21195819 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
246 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
21195884 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTA
311 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * * *
21195949 GCTAAATGTTTTTGTGCATGCTAAAAAAAATACAAGGATCACATCTACTAAGTTTGGGGCC-AAA
376 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * * *
21196013 ATGCCTTCCGAAAAAATTTTAAAAAATCTCGAATCGGAAAAAGTTTTGAAAATTGTGAAAAATGG
441 AT-CCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAG
*
21196078 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAA-GCTTAAGGGACCATTGTATGAATTTACAA
505 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
*
21196142 GCCATAAAATTGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
570 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
21196207 GATTCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCATAGT--------G-CT------CG--C-
635 GATCCACGGCTTGCGCATCCCGTCTCTCCGGCCGGCGTAGTGCCCGCCCGCCTCCCGCCCGCTCG
* * ** * *
21196254 -TTCGTTGGTTGGCTTGGGCATACGGAGTTCATT-CTTGTCTAAGATCGGACCAGACCGAGGGTT
700 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GATCGGACCGAGGGTT
* *
21196317 GT-G--GCA-G--C-ACA-CA-G-G-GGGGGACCCGGCCGATCCCTGGCTTGCGCATCCTGCCCC
764 GTGGCAGCAGGATCGACAGCACGAGAGGGGGACCC-GTCGATCCCTGGCTTGCGCATCCCGCCCC
* * * *
21196371 TCTGGCTGACTGAGCGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTTATTCCC
828 TCTGGC-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
21196436 AGTCTAA
892 AGTCTAA
* *
21196443 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTG-GAGCAGCACATGCTGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCG-GCAGCACATGCTGG
* ** * * * * *
21196507 ACTCAGGCATGTCCTGGTGCCGCATTCTTT-TTCGTCGGGGCACCATCGCTGGAGCATCGTCGAA
65 GCTTGGGCATGTGCTGGTGCCGCATT-TTTCTTCGCCAGGGCACCATCGCCGGAGCATCGCCG-A
* * *
21196571 GAACCTGACCGGCGGCATTGGGGTTCTGACGATCGGGGGGGCC-GGGGGGTGTGCACACATGATG
128 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
*
21196635 TGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
21196700 ACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
21196765 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTAAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
21196830 TATGCATGCTAACAAAAATACAGGGATCAC
388 TGTGCATGCCAACAAAAATACAAGGATCAC
21196860 CCTATCGATC
Statistics
Matches: 4238, Mismatches: 481, Indels: 279
0.85 0.10 0.06
Matches are distributed among these distances:
851 12 0.00
852 9 0.00
853 21 0.00
854 23 0.01
855 4 0.00
856 33 0.01
857 8 0.00
858 7 0.00
859 28 0.01
860 14 0.00
861 15 0.00
862 24 0.01
863 30 0.01
864 141 0.03
865 127 0.03
866 193 0.05
867 34 0.01
868 39 0.01
869 198 0.05
870 11 0.00
871 34 0.01
872 17 0.00
873 32 0.01
874 7 0.00
875 19 0.00
876 32 0.01
877 11 0.00
878 28 0.01
879 17 0.00
880 9 0.00
881 4 0.00
882 2 0.00
883 2 0.00
884 5 0.00
888 3 0.00
889 24 0.01
890 82 0.02
891 421 0.10
892 97 0.02
893 22 0.01
894 180 0.04
895 118 0.03
896 1 0.00
897 1 0.00
898 53 0.01
899 49 0.01
900 433 0.10
901 473 0.11
902 578 0.14
903 309 0.07
904 203 0.05
905 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCAGGGCACCATCGCCGGAGCATCGCCGAGAA
CCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCCGGCCGGCGTAGTGCCCGCCCGCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGATCGGACCGAGGGTTGTGGCAGCAGGATCGAC
AGCACGAGAGGGGGACCCGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCGGCTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:21194721 original size:26 final size:26
Alignment explanation
Indices: 21194685--21194736 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
21194675 GTTGACTTAG
*
21194685 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
21194711 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
21194737 AATCAGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:21196446 original size:26 final size:26
Alignment explanation
Indices: 21196417--21196469 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21196407 GTTGACTTAG
*
21196417 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21196443 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21196469 G
1 G
21196470 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21197987 original size:26 final size:26
Alignment explanation
Indices: 21197958--21198010 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21197948 GTTGACTTAG
*
21197958 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
21197984 GCATACGAAGTTCATTCTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21198010 G
1 G
21198011 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21199081 original size:881 final size:881
Alignment explanation
Indices: 21197080--21199519 Score: 3120
Period size: 881 Copynumber: 2.7 Consensus size: 881
21197070 GTTGACATAG
* * *
21197080 GCATACAGAGTTCATTC-CGAGTCTAAGATCGGACTGGATCAAGGGTTGCGGCAGCACG-TGCTG
1 GCATACGGAGTTCATTCTC-AGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCA-GATGCTG
* *
21197143 GGCTCGGGCATGTGCTGGCGTCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT-G-CGGA
* * * * *
21197208 GAACTTGACTGGCGGCATTGGGGTTCGGGCGATTAGGGGGGCCAAGGGTGGGGATGTGCGCACAT
127 -AACCTGACTGGCGGCATTGGGGTTCCGGCGATCAGGGAGGCC--GGG-GGGG-TGTGCGCACAC
* * *
21197273 GATGTGCGATGGGTGCCGGTACTTGACGCTTATATTGGCCCCATATCCCTCATCGAGCCTCAAGA
187 GATGTGCGATGGGTGCTGGTACTTG--GC------T--CCCC-TATCCCTCATCGAACCTCGAGA
*
21197338 ACTCACACCGCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
241 ACTCACACC-CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTC
* *
21197403 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAAGT
304 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
21197468 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTCG
369 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC
* *
21197533 AAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCGAAAATCGTCAAAAATAAGAAAACGAG
434 AAAAAAATTTT-AAAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAAT-AGAAAACGAG
* * *
21197598 TTGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTGTGAATTTACAAGCCATAAA
497 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*** * *
21197663 AATGGCATTGGCATAAAGAAATATGAAGATGTGCCAAAACACACCTACCACCCTATCGATCCACG
562 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
21197728 GCTTGCGCATCCCGTTTCTCTAGCCGACGTAGTGCCCGCCCGCCCGCCCGTTCGTTTCGTTGGTT
627 GCTTGCGCATCCCGTCTCTCTAGCCGACATAGTGCCCGCCCGCCCG-CCGTTCGTTTCGTCGGTT
21197793 AGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGTGGCAACAGG
691 AGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGTGGCAACAGG
** * * * * *
21197858 ATCAACAGCATGCGAAGGGGACCTGGCCGATCCCCGGCTTGCACATCCCGGCCCTCTAGCCGGCT
756 ATCAACAGCACACGAAGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTAGCCAGCT
* * *
21197923 GAGCGCCCGCACGCTAGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
821 GAGCGCCCACACGCTAGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * * *
21197984 GCATACGAAGTTCATTCTCAGTCTAAGATCAGACTGGACCGAGGGTTGTGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGATGCTGGG
* *
21198049 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCCTC--AG-A-----AAACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATGCGGAAACC
* * **
21198106 TGACTGGCGGCATTGGGGTTCCGACGATC-GGGAGGTCGGGGGGGTGTGCGCACACGATGTATGA
131 TGACTGGCGGCATTGGGGTTCCGGCGATCAGGGAGGCCGGGGGGGTGTGCGCACACGATGTGCGA
* *
21198170 TGGGTGCCGATACTGGCCCTTATATTGGC-CCCCTATCCCTCATCGAACCTTGAGAACTCACACT
196 TGGGT---G---CTGG----TA-CTTGGCTCCCCTATCCCTCATCGAACCTCGAGAACTCACAC-
* *
21198234 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAGTGGA
249 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAATGGG
*
21198299 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGC
313 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * *
21198364 ATGCGAACAAAAATACAAGCATCACATCCACCAATTTTGGGGCC-AAACTCCTTCCAAAAAAATT
378 ATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * **
21198428 TTAGAAAATCTCGAACCGTAAAAAGTTTTAAAAATCAAGAAAAATAGAAAACGAGTCGTCTTGCC
443 TTA-AAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* *
21198493 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGAATTG
507 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
21198558 GTACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCGCAT
572 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
21198623 CCCGTCTCTTTGGGCGGCATAGTGCCCGCCCGCCCG-C-TT-GTTTCGTCGGTTGGCTTAGGCAT
637 CCCGTCTCTCTAGCCGACATAGTGCCCGCCCGCCCGCCGTTCGTTTCGTCGGTTAGCTTAGGCAT
* * ** ** * * *
21198685 ATGGAGTTCATTGCCGGTCTAAGATCAGACTGGATTGAGGGTTGTGGTAGCAGGATCAGCAGCAC
702 ACGGAGTTCATTCCCAATCTAAGATCAGACTGGACCGAGGGTTGTGGCAACAGGATCAACAGCAC
* * * * * *
21198750 ACAGAGGGGGACCCGATCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCAGCTGAGCG-CCAT
767 AC-GAAGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTAGCCAGCTGAGCGCCCAC
* * *
21198814 ACGCTCGTTTCATGGGTTGACTTAGGCATACATAGTTCATTCCTAGTCTAA
831 ACGCTAGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
21198865 GCATATGGAGTTCATTCTCAGTCAAAGATCGGATTGAACCGAGGGTTGCGGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGATGCTGGG
* * * *
21198930 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCGCCATCGTCGGAGCATTGCCGGACA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCA-TG-CGGA-A
* * * *
21198995 ACCTGACTGGCGGCATTGGGGTTCCGGCGATCAAGGTGG-CTGGGGGGTGTGCGCACAGGATGTG
128 ACCTGACTGGCGGCATTGGGGTTCCGGCGATCAGGGAGGCCGGGGGGGTGTGCGCACACGATGTG
**
21199059 CGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCTCTATCCCTCATTAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGG--------CT--CCC-CTATCCCTCATCGAACCTCGAGAACTCAC
*
21199124 ACCCCCTTAAAGAGCATTCGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
247 A-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-AGTAGCCATTAAAGTGTCTGAAAT
* *
21199189 GGGGACACTTTTTTC-AATGGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTATT
310 GGGGACACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
21199253 GTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAA
374 GTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAA
* *
21199318 AATTTTAAAAAGTCTCGAACCATAGAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCT
439 AATTTTAAAAA-TCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
21199383 TGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAG-CAGTAAAAATGG
503 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGG
* * *
21199447 CATTGGCGCGTAGAAATATGAAGATGTGCCTATACCCACCTACCACCCTATCGATCCCCGGCTTG
567 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
21199512 CGCATCCC
632 CGCATCCC
21199520 ACCTCTCTGG
Statistics
Matches: 1339, Mismatches: 151, Indels: 102
0.84 0.09 0.06
Matches are distributed among these distances:
881 227 0.17
882 51 0.04
883 3 0.00
884 1 0.00
885 169 0.13
886 60 0.04
887 186 0.14
888 27 0.02
889 6 0.00
890 3 0.00
891 2 0.00
892 74 0.06
893 222 0.17
894 199 0.15
897 2 0.00
898 2 0.00
899 3 0.00
901 1 0.00
902 2 0.00
904 98 0.07
905 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (881 bp):
GCATACGGAGTTCATTCTCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAGCAGATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATGCGGAAACC
TGACTGGCGGCATTGGGGTTCCGGCGATCAGGGAGGCCGGGGGGGTGTGCGCACACGATGTGCGA
TGGGTGCTGGTACTTGGCTCCCCTATCCCTCATCGAACCTCGAGAACTCACACCCCTTAAAGAGC
ATTTGAGATTTTACAGGTTTGCTGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAA
TACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAATCTCGA
ACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGC
CGACATAGTGCCCGCCCGCCCGCCGTTCGTTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCC
CAATCTAAGATCAGACTGGACCGAGGGTTGTGGCAACAGGATCAACAGCACACGAAGGGGACCCG
ACCGATCCCCAGCTTGCACATCCCGCCCCTCTAGCCAGCTGAGCGCCCACACGCTAGTTTCATGG
GTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:21201284 original size:26 final size:26
Alignment explanation
Indices: 21201254--21201306 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21201244 GTTGACTTAG
21201254 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21201280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21201306 G
1 G
21201307 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21202183 original size:26 final size:26
Alignment explanation
Indices: 21202154--21202206 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21202144 GTTGACTTAG
*
21202154 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21202180 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21202206 G
1 G
21202207 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21203084 original size:26 final size:26
Alignment explanation
Indices: 21203048--21203100 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21203038 GTTGACTTAG
* *
21203048 GCATACGGAGTTGATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
21203074 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
21203100 G
1 G
21203101 ATCGATCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:21203413 original size:894 final size:895
Alignment explanation
Indices: 21201174--21204975 Score: 5255
Period size: 900 Copynumber: 4.2 Consensus size: 895
21201164 CCCACCTACC
* * * * ** *
21201174 ACCCTATCGATCCCCGGCTTGCGCATCCCACCTCTCTGGCCAGCTGAGCGCTTGTACGCTCGTTT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
21201239 CATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * **
21201304 AAGATCGGACCGGACCGAGGGTTGTGGTACCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCAT
131 AAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* *
21201369 TTTTCTTCACCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGATCGGCGACATTGGGGTTC
196 TTTTCTTCACCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGACATTGGGGTTC
*
21201434 CGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
261 CGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
21201499 TATTGGCCCCCTACATCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
326 TATTGGCCCCCTACACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
21201564 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAAT-GTACAC
391 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT-CAC
* *
21201628 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATGCAAGGAT
455 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * *
21201693 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAATCTTGAATCGTAA
520 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA-TTTAAAAAAATCCTGAACCGCAA
*
21201758 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCT
584 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
21201823 TAAGGGACCATTGCATGAATTTACGAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATG
649 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATG
* * *
21201888 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATACCATCTTTCTGGCCGGCGTA
714 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGGCCGGCGTA
* * * *
21201953 GTGCCTGCCCGCCCCCGCCCACTCGTTTTGTCGG-TGAGCGTAGGCATACGGAGTTCATTCC-AG
778 GT--C-GCCCGCCCGC-CCCGCTCGTTTCGTCGGTTG-GCTTAGGCATACGGAGTTCATTCCTAG
* * * * *
21202016 TCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATTGGCAGCACGTAAAGGGGG
838 TCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
** * ** *
21202074 ACCCGATCGATCCCCGGCTTGCGCATCTTGCCCCTCTAGCCGATTGAGCGCCCGTACGCTCGTTT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* *
21202139 CATGGGTTGACTTAGGCATACGGAGTTGATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * *
21202204 AAGATCGGACCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCAT
131 AAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* *
21202269 TTTTCTTCACCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGATCGGCGACATTGGGGTTC
196 TTTTCTTCACCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGACATTGGGGTTC
*
21202334 CGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
261 CGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
21202399 TATTGGCCCCCTACATCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
326 TATTGGCCCCCTACACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
21202464 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTCTTTTCAAATGGTCACA
391 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * *
21202529 AAATCTTGTACACTTCGAGTTTTTGGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGCATC
456 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
** * * *
21202594 ACGTCTACCAAGTTTGATGCCAAAACTCTTTCCAAAAAAACTTAAAAAAATCTTGAACCGCAAAA
521 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCTGAACCGCAAAA
** * * *
21202659 AGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTA
586 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
21202724 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
651 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
21202789 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGT
716 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC-CGTCTCTCTGGCCGGCGTAGT
* *
21202854 -GCCTGCCCG-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCCTTCCTAGTCTAAGA
780 CGCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGA
* * * * * * *
21202917 TCGGATCAGACCAAGGGTTGCGGCAGCAAGATCGACAGCATGGAGAGGGGG
845 TCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * *
21202968 ACCTGATCGATCCCCGGCTTGCGCATCGCGCCCCTCTGGCCGGCTGAGCTCCCGCACGCTCGTTT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * *
21203033 CGTGGGTTGACTTAGGCATACGGAGTTGATTCCTAGTCTAAGCATACAGAGTTCATTCCTAGTCT
66 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
** * ** * * *
21203098 AAGATC-GATC-GACCGAGGGTTGCGACAGCACATACTGCACTTGGGCATGTGCTGTTGCTGCAT
131 AAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
*** * * * ** *
21203161 TTTTCTTTGTCGGGGCACCATCGTCGGAGCATCGTCGAAGAACCTGACCGACGGTATTGGGGTTT
196 TTTTCTTCACCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGACATTGGGGTTC
* * * **
21203226 CGACGATCGGGGGGGCCGGGGGGGTGTACGCACGTGATGTGCAATGGGTGCTGGTACTTGGGGCT
261 CGACGATC-GGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
21203291 TATATTGGGCCCCTATC-CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
324 TATATTGGCCCCCTA-CACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
21203355 TTTTATAGGTTTGCTGCCATTAGCCATTAAAGAGTCTGAAATGGGCACACTTTTTTCAAATGGTC
388 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
21203420 ACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGG
453 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
** * * *
21203484 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCCCA
518 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCTGAACCGCA
* * * *
21203549 AAAAGTTTCAAAAATCGT-ACAAAATAAAAAATGAGTCGTCTTGCCATGAAACTGCACGTGAAGG
583 AAAAGTTTCAAAAATCATGA-AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* **
21203613 CTTAAGGGACCATTGTATGAATTTACGAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
647 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
*
21203678 TGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCG
712 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC-GTCTCTCTGGCCGGCG
*
21203743 TAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC
776 TAGT---CGCCCGCCCG-CC--CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * *
21203808 T-GCCTACGATCAGACCAGACCGAGGGTTGCGGCAGTAGGATCGGGAGCACGCAGAGGGGC
835 TAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * *
21203868 ACCCTG-CCGATCCTC-GCTTTCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTT
1 ACCC-GATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTT
* *
21203931 TCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGT-
65 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * **
21203995 TGAAGATCGGATCGGACCGAGGGTTACGGTAGCACAAGCTGGGCTTGGGCATGTGCTGGTGCCAT
130 T-AAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * ** **
21204060 ATTTTTCTTCGCTCGGGGCACCATCACCGGAGCATCGCCGGAGAACCTGACCGACGACATTGGGG
194 ATTTTTCTTCAC-CGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGACATTGGGG
** * * * *
21204125 TTCCGGTGATCGGGAGGGCCGAGTGGGTGTGCGCCCATGATGTGTGATGGGTGCTGGTACTTGGC
258 TTCCGACGATCGGG-GGG-CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * * *
21204190 CCTTATATTGGGCCCTTATC-CCTCATCAAACCTCAAGAACTTACACCCCCTTAAAGAGCATTTG
321 CCTTATATTGGCCCCCTA-CACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
** * * *
21204254 AGATTTTACAGGTTTTTTGCAACTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATG
385 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
21204319 GTCACATAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAACAAAAATACA
450 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
* * * * *
21204384 AGGATCACATCTACCAAGTTTGGCGCCAAAACTCCATCCGAAAAAAGTTTTAAAAAATCCTGAAC
515 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAAATTTAAAAAAATCCTGAAC
* *
21204449 TGCAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
579 CGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
* * * * *
21204514 ACGCTTAAGGGACCATTGTACGAATTTACAACCCATAAAAATGGCGTTGGCACATAGAAATATGA
644 AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGA
* *
21204579 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCCTTGTGCATCCCGTCTCTCTGGCCG
709 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGGCCG
*
21204644 ACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
773 GCGTAGT---CGCCCGCCCG--C-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
21204709 TCCCAGTC-AAGATCAGACCGGACCGAGGGTT-CTAGCAGCAGGATCGGTAGCACGCAGAGGGGG
832 TCCTAGTCTAAGATCAGACCAGACCGAGGGTTGC-GGCAGCAGGATCGGCAGCACGCAGAGGGGG
** * * * * *
21204772 ACCCGATCGATCCCCATCCTGTGCATCCCGCCTCTCAGGCCGGCTGAGCGCCCACACGCAT-GTT
1 ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC-TCGTT
* * * * *
21204836 TCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGTATACTGAGTTCTTTCCCAATC
65 TCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
* * * * * ** * *
21204901 TATGATCAGATTGGATCGAGGGTTACGACAGCATATGCTGGGCTCGGGCATGTGCTAGTGCCGCA
130 TAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
21204966 TTTTTCTTCA
195 TTTTTCTTCA
21204976 TTGAAGCATC
Statistics
Matches: 2599, Mismatches: 268, Indels: 65
0.89 0.09 0.02
Matches are distributed among these distances:
892 107 0.04
893 314 0.12
894 367 0.14
895 8 0.00
897 8 0.00
898 2 0.00
899 311 0.12
900 594 0.23
901 98 0.04
902 247 0.10
903 63 0.02
904 313 0.12
905 164 0.06
906 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
ACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
AAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
TTTTCTTCACCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGACATTGGGGTTC
CGACGATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
TATTGGCCCCCTACACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTAAAAAAATCCTGAACCGCAAAA
AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCGTCTCTCTGGCCGGCGTAGTC
GCCCGCCCGCCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGAT
CAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGG
Found at i:21205935 original size:26 final size:26
Alignment explanation
Indices: 21205899--21205949 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21205889 GATGACTTAG
21205899 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21205925 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
21205950 TGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21206532 original size:890 final size:899
Alignment explanation
Indices: 21205025--21206688 Score: 2465
Period size: 891 Copynumber: 1.8 Consensus size: 899
21205015 GTTGGCTTAG
* **
21205025 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGCCAGCACATGCTGGG
** ** *
21205090 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGAACATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCA-C-TC-GAGCA-CG-C-GAGA
* * *
21205155 ACTTGACCGGCGGCATTGGGGTTCCGCGATCGGGGGGCTGGGGGGTGTGCGCACATGATATGCGA
125 ACCTGACCGGCGGCATTGGGGTTCCGCGATCGGGGGGCCGGGGGGTGTGCGCAAATGATATGCGA
* *
21205220 TGGGTGCTGGTACTTGGCCCTTATATTGGCAAGCTATCCCTCATCAAACCTCGAGAACTCACACC
190 TGGCTGCTGGTACTTGGCCCTTATATTGGCAACCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
21205285 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGCGTCTAAAAAGGG
255 CCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGCGTCTAAAAAGGG
*
21205350 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGC
320 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGC
* * * * * *
21205415 ATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTCCCAAAAAATT
385 ATGCCAACAAAAATACAACGATCACGTCTAACAAGTTTGGGGCCAAAACCCCTACCAAAAAAATT
*
21205480 TGAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
450 TGAAAAAATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCC
* *
21205545 ATGAAACTTCACACGAAGGCTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGTATTG
515 ATGAAACTTCACACGAAGGCTTAAGGGACAATTGTATCAATTTACAAGCCATAAAAATGGCATTG
*
21205610 GCACACAGAAATATAAAGATGTGCCAAAACCCACCTACCA-CCTATCGATCCACGGCTTACGCAT
580 GCACACAGAAATATAAAGATGTGCCAAAACCCACCTACCACCCTAACGATCCACGGCTTACGCAT
* * * * *
21205674 CCCGTCTCTCTGGCCGACGTAGT-TCCCGCCTGCCCG-C-CT-GCCCGCTCGTTTCGTCGGTTGG
645 CCCGTCTCTCTGGCCAACGTAGTCACCCACCCGCCCGCCGCTCGCCCGCTCGTTTCGTCAGTTGG
* *
21205735 CTTAAGCATACGGAGTTCATTCCCAGTCTATGATCGGACCAGACCGAGGGTTGCGACAGCAGGAT
710 CTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGAT
21205800 CGGCAGCACGTAGAGAGGGACCCGGCCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTG
775 CGGCAGCACGTAGAGAGGGACCCGGCCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTG
21205865 AGCGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
21205925 GCATATGGAGTTCATTCCCAGTCTATGATCGGACCAGTCCGAGGGTTTTGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGCCAGCACATGCTGGG
* *
21205990 CTCGAACATGTGCTGGTGTCGCATTTTTCTTCACCGAGGCACCA-TC-A-C-CG-GAGAACCTGA
66 CTCGAACATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCACTCGAGCACGCGAGAACCTGA
* * * *
21206050 TC-GTGGCATTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGTGTTCGCAAATGATGTGCGATGG
131 CCGGCGGCATTGGGGTTCCG-CGATC-GGGGGGCCG-GGGGGTGTGCGCAAATGATATGCGATGG
* *
21206114 CTGCTGGTACTTGGCCCTTATATTGGTC-CCCTATCCCTCATCAAACCTCGAGAACTCACACCCT
193 CTGCTGGTACTTGGCCCTTATATTGG-CAACCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * *
21206178 CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGCGTCTAAAAAGGGGA
**
21206243 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT-TTTTTTTTTTTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCAT
* * * *
21206307 GCCAACAAAAATACATCGATCACGTCTAATAAGTTTGGGGCCAAAACTCCTACCAAAAAAATTTT
387 GCCAACAAAAATACAACGATCACGTCTAACAAGTTTGGGGCCAAAACCCCTACCAAAAAAATTTG
*** * * * *
21206372 AAAAAATGTTGAACCGCAAAAAGTTTTC-GAAATCGTGAAAAATAAAAAATGAGTTGTCTTGCCA
452 AAAAAATCCAGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCA
* *
21206436 TGAAACTTCACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
516 TGAAACTTCACACGAAGGCTTAAGGGACAATTGTATCAATTTACAAGCCATAAAAATGGCATTGG
* * *
21206501 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCGCATC
581 CACACAGAAATATAAAGATGTGCCAAAACCCACCTACCACCCTAACGATCCACGGCTTACGCATC
*
21206566 CCGTCTCTCTGGCCAACGTAGTGCCCACCCACCCGCCCGCCCGCTCGGCCGCTCGTTTCGTCAGT
646 CCGTCTCTCTGGCCAACGTAGT---CACCCACCCGCCCG-CCGCTCGCCCGCTCGTTTCGTCAGT
*
21206631 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
707 TGGCTTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
21206689 GTAGCACATG
Statistics
Matches: 680, Mismatches: 70, Indels: 29
0.87 0.09 0.04
Matches are distributed among these distances:
888 16 0.02
889 15 0.02
890 225 0.33
891 238 0.35
892 3 0.00
894 1 0.00
895 11 0.02
897 3 0.00
898 2 0.00
899 72 0.11
900 94 0.14
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGCCAGCACATGCTGGG
CTCGAACATGTGCTGGTGCCACATTTTTCTTCACCGAGGCACCACTCGAGCACGCGAGAACCTGA
CCGGCGGCATTGGGGTTCCGCGATCGGGGGGCCGGGGGGTGTGCGCAAATGATATGCGATGGCTG
CTGGTACTTGGCCCTTATATTGGCAACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGCGTCTAAAAAGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCA
ACAAAAATACAACGATCACGTCTAACAAGTTTGGGGCCAAAACCCCTACCAAAAAAATTTGAAAA
AATCCAGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAA
CTTCACACGAAGGCTTAAGGGACAATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCACAC
AGAAATATAAAGATGTGCCAAAACCCACCTACCACCCTAACGATCCACGGCTTACGCATCCCGTC
TCTCTGGCCAACGTAGTCACCCACCCGCCCGCCGCTCGCCCGCTCGTTTCGTCAGTTGGCTTAAG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCAGGATCGGCAG
CACGTAGAGAGGGACCCGGCCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:21207013 original size:726 final size:707
Alignment explanation
Indices: 21205925--21207413 Score: 2048
Period size: 727 Copynumber: 2.1 Consensus size: 707
21205915 CCCAGTCTAA
* * * * * **
21205925 GCATATGGAGTTCATTCCCAGTCTATGATCGGACCAGTCCGAGGGTTTTGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCACATGCTGGG
* * * *
21205990 CTCGAACATGTGCTGGTGTCGCATTTTTCTTCACCGAGGCACCATCACCGGAGAACCTGATCGTG
66 CTCGAACATGTGCTAGTGCCGCATTTTTCTTCACCGAGGCACCATCACCGGAGAACCTGACCGCG
* *
21206055 GCATTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGTGTTCGCAAATGATGTGCGATGGCTGCTG
131 GCATTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGTGTGCGCAAATGATGTGCGATGGCTGCCG
* *
21206120 GTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAG
196 GTACTTGGCCCTTATATTGGTCACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* *
21206185 AGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
261 AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTT
**
21206250 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT-TTTTTTTTTTTGCATGCCAACA
326 TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
* * * *
21206314 AAAATACATCGATCACGTCTAATAAGTTTGGGGCCAAAACTCCTACCAAAAAAATTTTAAAAAAT
391 AAAATACAACGATCACGCCTAACAAGTTTGGGGCCAAAACCCCTACCAAAAAAATTTTAAAAAAT
*** *** * * * *
21206379 GTTGAACCGCAAAAAGTTTTCGAAATCGTGAAAAATAAAAAATGAGTTGTCTTGCCATGAAACTT
456 CCCGAACCGCAAAAAGTTTAAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCACGAAACTT
* *
21206444 CACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGA
521 CACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACACAAA
21206509 AATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCGCATCCCGTCTCT
586 AATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCGCATCCCGTCTCT
* * *
21206574 CTGGCCAACGTAGTGCCCACCCACCCGCCCGCCCGCTCGGCCGCTCGTTTCGTCAGTTGGCTTAG
651 CTGGCCAACATAGTG----CCCACCCGCCCGCCCG--C--CCACTCATTTCGTCAGTTGGCTTAG
*
21206639 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCACATGCTGGG
** * ** *
21206704 CTCGGGCATGTGCTAGTGCCGGATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCGAACATGTGCTAGTGCCGCATTTTTCTTCACCGAGGCACCAT---C--A-C--CG---GAGA
* * * * *
21206769 ACCTGACCGGCGGCATTGGGGTTCTGGCGATCGGGGGGGCTG-GGGGCGTGTGCGCACATGATGT
120 ACCTGACC-GCGGCATTGGGGTTCCGACGATCAGGGGGGCCGAGGGG-GTGTGCGCAAATGATGT
* *
21206833 GCGATGGGTGCCGGTACTTGGCCCTTATATTGG-CAAGCTATCCCTCATCAAACCTCGAGAACTC
183 GCGATGGCTGCCGGTACTTGGCCCTTATATTGGTC-ACCTATCCCTCATCAAACCTCGAGAACTC
* * *
21206897 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAGTAGCTATTAAAGTGTCTGAA
247 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
21206962 AAGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
312 AAGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
* * * * *
21207027 TTTGCATGCCAATAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACCCCTTCCCAAA
377 TTTGCATGCCAACAAAAATACAACGATCACGCCTAACAAGTTTGGGGCCAAAACCCCTACCAAAA
* *
21207092 AAATTTTAAAAAATCCCGAACCGCAGAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTC
442 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATCATGAAAAATAAAAAACGAGTCGTC
* *
21207157 TTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGG
507 TTGCCACGAAACTTCACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGACATAAAAATGG
* *
21207222 CATTGGCACACAAAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
572 CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTG
* * * * * * *
21207287 CGGATCCCGTCTCTCTGGCCGACATAGTGCTCGCCCGCTCGCCCGCCTACTCATTTCGTCGGTTG
637 CGCATCCCGTCTCTCTGGCCAACATAGTGCCCACCCGCCCGCCCGCCCACTCATTTCGTCAGTTG
21207352 GCTTAG
702 GCTTAG
* * * * *
21207358 GCATACGGAATTCACTCCCAATCTAAGATCAGACCGGACCAAGGGTTGTGGTAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCA
21207414 GGATCGGCAG
Statistics
Matches: 680, Mismatches: 80, Indels: 25
0.87 0.10 0.03
Matches are distributed among these distances:
714 94 0.14
717 1 0.00
719 72 0.11
720 1 0.00
721 1 0.00
722 2 0.00
723 13 0.02
725 16 0.02
726 215 0.32
727 265 0.39
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (707 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGCACATGCTGGG
CTCGAACATGTGCTAGTGCCGCATTTTTCTTCACCGAGGCACCATCACCGGAGAACCTGACCGCG
GCATTGGGGTTCCGACGATCAGGGGGGCCGAGGGGGTGTGCGCAAATGATGTGCGATGGCTGCCG
GTACTTGGCCCTTATATTGGTCACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAAGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACA
AAAATACAACGATCACGCCTAACAAGTTTGGGGCCAAAACCCCTACCAAAAAAATTTTAAAAAAT
CCCGAACCGCAAAAAGTTTAAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCACGAAACTT
CACATGAAGGCTTAAGGGACAATTGTATGAATTTACAAGACATAAAAATGGCATTGGCACACAAA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCAACATAGTGCCCACCCGCCCGCCCGCCCACTCATTTCGTCAGTTGGCTTAG
Found at i:21209595 original size:721 final size:708
Alignment explanation
Indices: 21207593--21209748 Score: 2990
Period size: 721 Copynumber: 3.0 Consensus size: 708
21207583 AGCATTGCGA
* * * * *
21207593 CAGCACATGCTGGGCTCCGACATGTGCTGGTGCCGTATTTTTCTTCCCCGGGGCACCATCACCAG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGG
* * ** *
21207658 AGCATCGT-CGGAGAACCTAACCGACGGCATTGGGGTTTCGGTGATCGGGAGGGCCGGGGG-GTG
66 AGCATCGTCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCGGGGGGTGTG
* * * *
21207721 C-ACACATGATGTACGATGGGTG-TCGATACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAA
131 CGA-ACATGATGTGCGATGGGTGCT-GGTACTTGGCCCTTATATT-GGCCCCAAACCCTCATCAA
* * *
21207784 ACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTACTGTCAGTAGCCAT
193 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCAT
* *
21207848 TAAAGTGTCTGAAATGGGGACAC-TTTTTAAAATGGTCACAAAATCTTGTACACTTTGAGTTTTT
258 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * *
21207912 AGCTG-ATTTGTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGCGGCCAA
323 AGCTGAATTT-TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* *
21207976 AACTCCTTCCAAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAATATCATGAAAAAT
387 AACTCCTTCC-AAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
21208041 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTAC
451 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTAC
21208106 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
516 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
21208171 TCGATCCACGGCTTGCGCATCCCATCTCTCTAGTCGGCGTAGTGCCCGCCCGCCGGCCCACCCGC
581 TCGATCCACGGCTTGCGTATCCCGTCTCTCTAGCCGGCGTAGT----G--C-CC-GCCCACCCGT
* * * **
21208236 TCATTTCGTCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGG
638 TCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGAATGAGG
21208301 GTTGTGG
702 GTTGTGG
* ** * *
21208308 CAGCACATGTTGGGCTCGGG-ATGTGCTGGTGTCAC-T-TTTTTCTTCGTCGGGGAACCATCGTC
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTG-C-CGTATTTTTCTTCACCGGGGCACCATCGCC
* * *
21208370 GGAGCATCG-CCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGGTCGGGGGGGCCGGGGGTG
64 GGAGCATCGTCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGG-CGGGGG-G
* * * ** *
21208434 TGCGCGCACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTCATCA
127 TGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCAAACCCTCATCA
* * *
21208499 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAATAGTCA
192 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCA
21208564 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
257 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
*
21208629 TAGCTGAATTTTTTTGTGCATGCC-AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAA
322 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAA
* * * * * * *
21208693 AAATCCTTCCGAAACAATTTTAAAAAATCCTGAACGGCAAAAAGCTTCAAAAATTATGAAAAATA
387 AACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* * *
21208758 GAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGGATGAATCTACA
452 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACA
* *
21208823 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTAT
517 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
21208888 CGATCCACGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAATGCCCGCCCACCCGTTCGTTTTGT
582 CGATCCACGGCTTGCGTATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGTTCGTTTTGT
* * * * *
21208953 CGGTTGGCTTGGGCGTGCGGAGTTCATTCCCAGTCTAAGATCAGACCGGAGTGAGGGTTGTGG
647 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGAATGAGGGTTGTGG
*
21209016 CAGCACATGCTGGGCTCGGGCATGTGCTGCTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGG
* * *
21209081 AGCATCACCGGCGCATCACCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGTGAGAGC
66 AGCAT------CG--T--CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGC
*
21209146 TGGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACGAAAC
121 -GGGGGGTGTGCGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCAAAC
* *
21209211 CCTCATCAAACCTCGAGAACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
184 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCC
* *
21209276 AGTTGGCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
249 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
21209341 CGAGTTTTTCGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
314 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
21209406 GGGGCCAAAACGCCTTTCAAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCAT
379 GGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCAT
* * *
21209471 GGAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
444 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATG
21209536 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
509 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* * * * *
21209601 CACCCTATCGATACACGGCTTGCGCT-TCCTGTCTCTCTAGCCGACGTAGCGCCCGCCCGCCCGC
574 CACCCTATCGATCCACGGCTTGCG-TATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCG-
* * *
21209665 CCTATCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATTAGACTG
637 --T-TCG-T--TTT-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAG
21209729 AATCGAGGGTTGTGG
695 AAT-GAGGGTTGTGG
*
21209744 TAGCA
1 CAGCA
21209749 GGATCAGCAG
Statistics
Matches: 1276, Mismatches: 127, Indels: 63
0.87 0.09 0.04
Matches are distributed among these distances:
707 1 0.00
708 92 0.07
709 41 0.03
710 1 0.00
712 1 0.00
714 78 0.06
715 26 0.02
716 241 0.19
717 150 0.12
718 57 0.04
719 54 0.04
720 203 0.16
721 262 0.21
722 1 0.00
724 1 0.00
725 3 0.00
726 1 0.00
727 4 0.00
728 33 0.03
729 26 0.02
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (708 bp):
CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGCCGG
AGCATCGTCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGAGGGCGGGGGGTGTG
CGAACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCAAACCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
CCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCC
ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
CCACGGCTTGCGTATCCCGTCTCTCTAGCCGGCGTAGTGCCCGCCCACCCGTTCGTTTTGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGAATGAGGGTTGTGG
Found at i:21209881 original size:26 final size:26
Alignment explanation
Indices: 21209852--21209902 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21209842 GTTAACTTAG
21209852 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21209878 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
21209903 CGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21210573 original size:12 final size:12
Alignment explanation
Indices: 21210556--21210581 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
21210546 ACGTAGTGCC
21210556 CGCCCGCCCGCT
1 CGCCCGCCCGCT
21210568 CGCCCGCCCGCT
1 CGCCCGCCCGCT
21210580 CG
1 CG
21210582 TTTCGTCGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.00, C:0.65, G:0.27, T:0.08
Consensus pattern (12 bp):
CGCCCGCCCGCT
Found at i:21211492 original size:26 final size:26
Alignment explanation
Indices: 21211456--21211508 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21211446 GTTGACTTAG
21211456 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21211482 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21211508 G
1 G
21211509 ATCAAACTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21213389 original size:26 final size:26
Alignment explanation
Indices: 21213360--21213412 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21213350 GTTGACTTAG
21213360 GCATACGAAATTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* * *
21213386 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
21213412 G
1 G
21213413 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:21214890 original size:26 final size:26
Alignment explanation
Indices: 21214854--21214906 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21214844 GTTAACTTAG
* *
21214854 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21214880 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21214906 G
1 G
21214907 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21216501 original size:894 final size:890
Alignment explanation
Indices: 21214309--21218485 Score: 5440
Period size: 892 Copynumber: 4.7 Consensus size: 890
21214299 GGTGCAGCAT
**
21214309 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAATGAATTTTTTTGTGCATGCC
1 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
21214374 AA-AAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATTTTAA
66 AACAAAAAATACAAGGATCACGTCTACCAA-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * *
21214438 AAAATCCCGAAACGTAAAAAGTTTCAAAAATTGTGAAAAATATAAAACGAGTCGTCTTTCCATGA
130 AAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
**
21214503 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACAGCATTGGCAC
195 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
21214568 ACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCATCCCA
260 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
21214633 TCTCTCTGGCCGGCGTAGTGCCCGCTCGCCCGCCCGCTTGCTCGTTTCGTCGGCTGGCTTAGGCA
325 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
21214698 TACGGAGTTCATTCCCAGTCCAAGATCAGACCAGACCGAGGGTTGCGACAGCAAGATCGACAGCA
388 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * *
21214763 CGTAGAGGGGGACCCGGTCGATCCCTGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCG
453 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC-GCCCTTCTGGCCGGCTGAGCGCCCG
* * * *
21214828 CACGCTCGTTTTGTGGGTTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTC
517 CACGCTCGTTTCGTGGGTTAACTT-GGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* **
21214893 ATTCCCAGTCTAAGATCGGACCAGACCGAGGGTCACGACAGCACATGCTGGGCTCGGGCATGTGC
581 ATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGC
** *** * * *
21214958 TGGTGCTGCATTTTTCTTTGTCAGGCCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGG
646 TGGTGCCACATTTTTCTTCACCGGGGCACCA-C-TC-G-G-AT--CCGGAGAACCTGACCGACGG
21215023 CATT-GGGTTCCGGCGATC--GGGGGCCGGGGG-TGCGCACATGATGTGCGATGGGTGCTGGTAC
704 CATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGTTGCGCACATGATGTGCGATGGGTGCTGGTAC
*
21215084 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
769 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCA
*
21215149 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AATGGGGACAC
834 TTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
21215205 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTAGCTGAATTTTTTTGTGCATGCC
1 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
21215269 AAC-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAA
66 AACAAAAAATACAAGGATCACGTCTACCAA-TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * *
21215332 AAAATCCTGAACCATAAAAAGTTT-GAAAATCATG-AAAATAGAAAACGAGTCGTCTTGCCATGA
130 AAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
21215395 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
195 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
21215460 -CAGAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
260 ACAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
21215524 GTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCAGTCGGCTTAGGC
324 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-CCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * *
21215589 GTACAGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTAGCAGGATCGGCAGC
387 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * * *
21215654 ACGCAGCGGGGGAACTGGCCGAGCCCCGGCTTGCGCATCTCGCCCTTCTGGCCGGCTTAGCGCCC
452 ACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATC-CGCCCTTCTGGCCGGCTGAGCGCCC
* * * * * * *
21215719 GTACACTCATTTTGTTGGTTAACTTAGGCATACGAAATTCATTCCCAGTCTAAGCATATGGAGTT
516 GCACGCTCGTTTCGTGGGTTAACTT-GGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * * *
21215784 CATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTG
580 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTG
* *
21215849 CTGGTGCCATATTTTTCTTCACCGGGGCACCA-TC-G-T-CGGAGAACCTGACCGACGGCATTGA
645 CTGGTGCCACATTTTTCTTCACCGGGGCACCACTCGGATCCGGAGAACCTGACCGACGGCATTGG
* * *
21215910 GGTTCTGACGATCGGGGGGGTCGATGGGGTATGCGCACATGATGTGCGATGGGTGCTGGTACTTG
710 GGTTCCGGCGATCGGGGGGGCCG--GGGGT-TGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* * *
21215975 GCCCTGATATTGGCCCCATATCCCACATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
772 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTT
*
21216040 GAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACAC
837 GAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
21216094 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTATCTAAATTTTTCTGTGCATGCC
1 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
21216159 AACAAAAAATACAAGGATCACGGCTACCAATATTGGGGTCAAAACTCCTTCCGAAAAAATTTTGA
66 AACAAAAAATACAAGGATCACGTCTACCAAT-TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
21216224 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
130 AAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
* *
21216289 AACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCAT
195 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
** * * *
21216354 GTAGAAATATGAAGATGTGCTTAAACCCACCTACCACCCTATCGATCCATGGCTTGCCCATCCCG
260 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
21216419 TCTCTCTGGCCGACGTAGTGCTCGCCCGCCTACCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCA
325 TCTCTCTGGCCGACGTAGTGCCCGCCCGCC-CCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
21216484 TACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCAAGGGTTACGACAGCAAGATCGGCAGCA
388 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * ** * * * * * * * * *
21216549 CGCAAAGGGGGACCTGGTTGATACCCTGCTTGTGCATCC-CGCTACCGGTCGACTGAGGGCCCGC
453 CGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCGCCCTTCTGGCCGGCTGAGCGCCCGC
*
21216613 ACGTTCGTTTCGTGGG------T----T--G-A---C-TT---AG-----GCATACGGAGTTCAT
518 ACGCTCGTTTCGTGGGTTAACTTGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
21216653 TCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGATAGCACATGCTGGGATTGGGCATGTGTTG
583 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * *
21216718 GTGCCATATTTTTCTTCACCGGGGCACCATCGCTGGAGCATCACCGAGAACCTGACCGACGGCAT
648 GTGCCACATTTTTCTTCACCGGGGCACCA---CTCG-G-ATC-CGGAGAACCTGACCGACGGCAT
* * *
21216783 TGGGGTTCCGGCAATCGGGGGGGTCGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTCCT
707 TGGGGTTCCGGCGATCGGGGGGG-CCGGGGG-TTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
21216848 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT-AGAGAACTCACACCCCCTTAAAGTGCA
770 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCA
*
21216912 TTTGAGATTTTACAGGTTTGCTGCCAATAGCCGTTAAAGTGTCTGAAATGGGGACAC
834 TTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
21216969 TTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
1 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * * *
21217034 AAC-AAAAGTGCAAGGATCACGTCTACTGAGTTTGGGGCCAAAACCCCCTCCGAAAAAATTTTAA
66 AACAAAAAATACAAGGATCACGTCTAC-CAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
** * *
21217098 AAAATCCCGAACCGCCAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGA
130 AAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
* * *
21217163 GACTTCAAGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTAC
195 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
** * *
21217228 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCATGGCTTGCGCATCCCG
260 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * **
21217293 TCTCTGTGGCTGGCGTAGTGCCCTCCCTCCTGCCG--GCTCGTTTCGTCGGTTGGCTTAGGCATA
325 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * * * * *
21217356 CGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTCCTGTAGCAGGATCGGCAGCATG
390 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* * * *
21217421 CAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
455 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCGCCCTTCTGGCCGGCTGAGCGCCCGCA
* * * * *
21217486 CGCTCGTTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCTTATGGAGTTCAT
519 CGCTCGTTTCGTGGGTTAAC-TTGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
** * * *
21217551 TCCCAGTCTAAGATCGGATAGGACCGAGGGTTGCGGCTGCACATGCTGGGCTCGAGCATGTGCTG
583 TCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
21217616 GTGCTACATTTTTCTTC-GCTGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCA
648 GTGCCACATTTTTCTTCACCGGGGCACCA-C-TC-G-G-AT--CCGGAGAACCTGACCGACGGCA
* *
21217680 TTGGGGTTCCGGTGATCGGGGGGGCCGGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGA
706 TTGGGGTTCCGGCGATCGGGGGGGCC--G-GGGGT-TGCGCACATGATGTGCGATGGGTGCTGGT
* * ** * **
21217745 ACTCGACCCTTATATTCACCCCCTATCTCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAG
767 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAG
* * *
21217810 CATTTGAGGTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATAC
832 CATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
21217869 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
1 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * ** *
21217934 AA-AAAAAATACAAGGATCACGTCTACCATGTTTGGGGCCAAAACTCTTTTTGAAAAAGTTTTAA
66 AACAAAAAATACAAGGATCACGTCTACCA-ATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * * * * * * *
21217998 AAAATCCCAAACTGCATAAACTTTTGAAAATCGTGAAAAAGAGAAAACGAGTCATCTTGCAATGA
130 AAAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGA
21218063 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
195 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* *
21218128 ACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCGCATCCCG
260 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
21218193 TCTCTCTGGCCGACGTAGT----GCCCG-CCCAC-CCGCTCATTTCGTCGGTTGGCTTTGGCATA
325 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* *
21218252 CGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGGCAGCAGGATCGGCAGCACG
390 CGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACG
* *
21218317 CAGAGGGGGATCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTT-TGGCTGGCTGAGCGCCCGC
455 CAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC-G-CCCTTCTGGCCGGCTGAGCGCCCGC
* **
21218381 ACGCTCGTTTCGTGGGTTGACTTGAGCATTTGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
518 ACGCTCGTTTCGTGGGTTAACTTG-GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* * * *
21218446 TTCCCAGTCTAAGATCAGACAGGACTGAGGGTTACGACAG
582 TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAG
21218486 TAAGATCAGC
Statistics
Matches: 2871, Mismatches: 332, Indels: 156
0.85 0.10 0.05
Matches are distributed among these distances:
866 98 0.03
870 109 0.04
871 4 0.00
872 33 0.01
873 3 0.00
874 258 0.09
875 213 0.07
876 41 0.01
877 1 0.00
878 1 0.00
879 2 0.00
881 23 0.01
882 11 0.00
883 1 0.00
884 8 0.00
885 1 0.00
886 7 0.00
888 135 0.05
889 50 0.02
890 30 0.01
891 47 0.02
892 509 0.18
893 20 0.01
894 326 0.11
895 81 0.03
896 262 0.09
897 20 0.01
898 123 0.04
899 4 0.00
900 450 0.16
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (890 bp):
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
AACAAAAAATACAAGGATCACGTCTACCAATTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
AAATCCCGAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGACGTAGTGCCCGCCCGCCCCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGC
AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCGCCCTTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTAACTTGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG
CCACATTTTTCTTCACCGGGGCACCACTCGGATCCGGAGAACCTGACCGACGGCATTGGGGTTCC
GGCGATCGGGGGGGCCGGGGGTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
TTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
CAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACAC
Found at i:21218566 original size:185 final size:185
Alignment explanation
Indices: 21218247--21218645 Score: 541
Period size: 185 Copynumber: 2.2 Consensus size: 185
21218237 GTTGGCTTTG
* * * * *
21218247 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAAGGTTACGACAGCAAGATCAGCA
* * * * * * *
21218312 GCACGCAGAGGGGGATCCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTTTGGCTGGCTGAGCGC
66 GCACGCAGAGAGGGACCCAGCCGATCCCCGACTCGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
**
21218377 CCGCACGCTCGTTTCGTGGGTTGACTT-GAGCATTTGAAGTTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCGTGGGTTGACTTAG-GCATACGAAGTTCATTCCCAGTCTAA
* * *
21218432 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACTGAGGGTTACGACAGTAAGATCAGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCA-GACCGAAGGTTACGACAGCAAGATCAGC
* * *
21218496 AGCACGTAGAGAGGGACCCAGCTGATCCCCGACTCGCGCATCCTGCCCCTCTGGCCGGCTGAGTG
65 AGCACGCAGAGAGGGACCCAGCCGATCCCCGACTCGCGCATCCTGCCCCTCTGGCCGGCTGAGCG
* *
21218561 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
130 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
* * *
21218617 GCGTACGAAGTTCATTCCTAGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
21218646 TGGACCAGAC
Statistics
Matches: 187, Mismatches: 25, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
184 2 0.01
185 184 0.98
186 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.28, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAAGGTTACGACAGCAAGATCAGCA
GCACGCAGAGAGGGACCCAGCCGATCCCCGACTCGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
Found at i:21218630 original size:26 final size:26
Alignment explanation
Indices: 21218594--21218643 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21218584 GACTTAGGCA
*
21218594 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAGTCTAAGCG
*
21218620 TACGAAGTTCATTCCTAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
21218644 ATTGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCG
Found at i:21219514 original size:26 final size:26
Alignment explanation
Indices: 21219484--21219536 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21219474 GTTGACTTAG
*
21219484 GCATACAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
21219510 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
21219536 G
1 G
21219537 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:21220866 original size:895 final size:896
Alignment explanation
Indices: 21218432--21222385 Score: 5363
Period size: 895 Copynumber: 4.4 Consensus size: 896
21218422 CCCAGTCTAA
* * * * * *
21218432 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGGACTGAGGGTTACGACAGTAAGATCAGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACA-GACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * * *
21218497 GCACGTAGAGAGGGACCC-AGCTGATCCCCGACTCGCGCATCCTGCCCCTCTGGCCGGCTGAGTG
65 GCACGTAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCG
* * * *
21218561 CCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGAA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
* * * *
21218626 GTTCATTCCTAGTCTAAGATTGGACC-AGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGCGCA
194 GTTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCA
*
21218690 TGTGCTGGTGCCACATTTTTCTTCGTCGAGACACCAT-C---G-T---CGGAGAACCTGACCGAC
258 TGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCCTGGGATCACCGGAGAACCTGACCGAC
*
21218747 GGCATT-GAGGTTCCGACGATCGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTG
323 GGCATTAG-GGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* *
21218811 GTACTTGGGCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAGCTCACACCCCCTTAAAG
387 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
21218876 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTGAAATGGGGACACTTTT
452 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * *
21218941 TTC-AATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTGACTTTTTTTGTGCATGCCAACA
517 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCACGCCAACA
* * *
21219005 AAAATACAATGATCAAGTCTACCAAGTTTGGGGCCAAAACTCC-CTCCAAAAAAATTTTAAAAAA
582 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCC-AAAAAATTTTAAAAAA
* * * * *
21219069 TTCCAAACCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACT
646 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACT
* *
21219134 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGCAG
711 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
21219199 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTC
776 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
21219264 TTTGGCCGACGTAGTGCCGCCCGCCAGCCCGCACGTCCGCTTGTTTCGTCGGTTGGCTTAG
841 TCTGGCCGACGTAGT---G-CCGCCAGCCCACACG-CCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * *
21219325 GCATACGGAGTTCATTCCTAGTCTAAGATTAGATCGGATCGAGGGTTGTGGCAGCAGGATCGACA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * **
21219390 GCACATAGAGGGGGGCCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCAGCTGAGCGC
65 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGC
* * * * *
21219455 CTGCACGCTCATTTCATGGGTTGACTTAGGCATACAAAGTTCATTCCTAGTCTAAGCATACGGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
* * *
21219520 TTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATG
195 TTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATG
** * * *
21219585 TGCTGGTGCCGTATTTCTCTTCGTC-AGGGCACCATCATCGGTGCATCATCGGAGAACCTGACCG
260 TGCTGGTGCCACATTTTTCTTCGTCGA-GGCACCATCCT-GG-G-ATCACCGGAGAACCTGACCG
* **
21219649 ACGGCACTAGGGTTTCCGGTGATCAGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
321 ACGGCATTAGGG-TTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGT
*
21219714 GCTGGTACTTGGCCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
383 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
*
21219779 AAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
448 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
21219844 TTTTTTCAAATGGTCACAAAATCTTGTAAACTTCGAGTTTTTAGCTGAATTTTTTTG-CGCATGC
513 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTC-CACGC
* ** *
21219908 CAAGAAAAATACAAGGATCACGTCTACCAAGTTTATGGCCAAAACTCCTTTCGAAAAAATTTTAA
577 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAAAATTTTAA
* * * *
21219973 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATCGAACACAAGTCGTCTTGCCATGA
642 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGA
*
21220038 AGCTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
707 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
21220103 ACAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCGACGGCTTGCGCATCCCG
772 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
*
21220168 TCTCTCTGGCCGACGTAGTG-C-CC-G-CC-CAC-CCGCTCGTTTCGTCGGTTGGCTTTG
837 TCTCTCTGGCCGACGTAGTGCCGCCAGCCCACACGCCGCTCGTTTCGTCGGTTGGCTTAG
* *
21220222 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAAGGTTGCGGCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
21220287 GCACGCAGAGGGGGATCCGGCCGATCCCCGGCTTACGCATCCTGCCCCTTTGGCTGGCTGAGCGC
65 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGC
**
21220352 CCGCACGCTCGTTTCGTGGGTTGACTT-GAGCATTTGAAGTTCATTCCCAGTCTAAGCATACGGA
130 CCGCACGCTCGTTTCGTGGGTTGACTTAG-GCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
* * *
21220416 GTTCATTCCCAGTCTAAGATCGGACCGAATCGAGGGTTGCGGCAGCACATGCGGGGCTCAAGCAT
194 GTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
* * *
21220481 GTGCTGGTGCCACATTTTTCTTCGTCGAGGTACCATCACTTGAGGATCACCGAAGAACCTAACCG
259 GTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATC-C-TG-GGATCACCGGAGAACCTGACCG
* * * *
21220546 GCGGCATTAGGGTTTCGACGATCGGGGGGGCCGGGGGGTTTACGCACATGATGTGC-ATTGGGTG
321 ACGGCATTAGGGTTCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA-TGGGTG
* * *
21220610 CTGGTACGTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCACGAGAACTCACACCCCCTTA
384 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
21220675 AAGAGCATTTGAGATTTTACAGGTTTGCCGCCAGTAGCCCTTAAAGTGTCTGAAATGGGGACACT
449 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
21220740 TTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCACGCCA
514 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCACGCCA
*
21220805 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTC-TTCCAAAAGAATTTTAAA
579 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAA-AATTTTAAA
* * *
21220869 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
643 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAA
* *
21220934 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTGGCATG
708 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
21220999 TAGAAATATGAAGTTGTGCCTAAACCCACTTACCACCCTATCGATCCACGG-TTGGCGCATCTCG
773 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-GCGCATCCCG
* ** * * *
21221063 TCTCTCTGGTCGGTGTAGTGCCCGCCTGCCCTCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
837 TCTCTCTGGCCGACGTAGTG-CCGCCAGCCCACACG-CCGCTCGTTTCGTCGGTTGGCTTAG
* * **
21221125 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCACCAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
21221190 GCACGTAGATGGGGACCCGATCGATCCCCGACTTGCGCATCCCGCCCATCTGGC---CT------
65 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGC
* *
21221246 --GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACAGAG
130 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
21221309 TTCATTCCCAGTATAAGATCAGATC-AGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCAT
195 TTCATTCCCAGTCTAAGATCGGACCGA-ACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
* * * *
21221373 GTGCTGGTGCCACAATTTTCTTCATCGGGGCACCAT-C---G-T---CGGAGAACCTGACCGGCG
259 GTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCCTGGGATCACCGGAGAACCTGACCGACG
* * *
21221430 GCATT-GAGGTTCCGACGATCGAGGGGCCGGGGGGTATGCGCACATGATGTGTGATGGGTGCTGG
324 GCATTAG-GGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGG
* * *
21221494 TACTTGGCCCTTATATTGGCCCCCTATCTCTCATCGAACCTCGAGAACTCACACCCCCTTAAAAA
388 TACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
*
21221559 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTT
453 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * * *
21221624 TCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTTATGCATC-CAAAC
518 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTCCA-CGCCAAC
* *
21221688 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTTTCGAAAAAATTTTAAAAAA
581 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAAAATTTTAAAAAA
* *
21221753 TCCTGAACCCCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACT
646 TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACT
* * ** *
21221818 TCACATGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCTGTAAAAATGGCATTGGCACGTAG
711 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * * *
21221883 AAATATAAAGATGTG-C---ACCCACCTAGCAGCCTATCGATCCAC-GCTTGCGCATCCCATCTC
776 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
21221943 TCTGGCCGACGTAGTGCTCGTCC-G-CCACCCGCTCGCTCGTTTTGTCGGTTGGCTGAG
841 TCTGGCCGACGTAGTGC-CG-CCAGCCCACACGC-CGCTCGTTTCGTCGGTTGGCTTAG
* * * *
21222000 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAGGGTTGTGGCAGTAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-AGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
21222065 GCATGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCAACCCGCCCCTCTGG-TCGGCTGAGCG
65 GCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCT-GGCTGAGCG
* * *
21222129 CCCGCACACTCGTTTGGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
129 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
* *
21222194 GTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTACGACAGCACATGCTGGGCTCGAGCAT
194 GTTCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCAT
*** * * * *
21222259 GTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGGCCG
259 GTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCCT-GG-G-ATCACCGGAGAACCTGACCG
* *
21222324 ACGGCATTAGGGTTCCGACGATCAGGGGGCCGGGGGGTGTGCGCACATGATGTGTGATGGGT
321 ACGGCATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGT
21222386 ATTAAAGTAT
Statistics
Matches: 2706, Mismatches: 279, Indels: 148
0.86 0.09 0.05
Matches are distributed among these distances:
874 2 0.00
875 130 0.05
876 29 0.01
877 27 0.01
878 2 0.00
880 203 0.08
881 235 0.09
882 8 0.00
884 1 0.00
885 1 0.00
886 144 0.05
887 1 0.00
890 1 0.00
891 1 0.00
892 145 0.05
893 248 0.09
894 13 0.00
895 455 0.17
896 18 0.01
897 378 0.14
898 6 0.00
899 7 0.00
900 6 0.00
901 4 0.00
902 2 0.00
903 129 0.05
904 24 0.01
905 11 0.00
906 8 0.00
907 162 0.06
908 303 0.11
909 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
CACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGT
TCATTCCCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGT
GCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCCTGGGATCACCGGAGAACCTGACCGACGGC
ATTAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTAC
TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
AATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTCCACGCCAACAAAAA
TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCCAAAAAATTTTAAAAAATCCCG
AACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACG
TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
CCGACGTAGTGCCGCCAGCCCACACGCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:21221310 original size:26 final size:26
Alignment explanation
Indices: 21221273--21221325 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21221263 GTTGACTTAG
* *
21221273 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
21221299 GCATAC-AGAGTTCATTCCCAGTATAA
1 GCATACGA-AGTTCATTCCCAGTATAA
21221325 G
1 G
21221326 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:21222195 original size:26 final size:26
Alignment explanation
Indices: 21222159--21222211 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21222149 GTTGACTTAG
21222159 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21222185 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21222211 G
1 G
21222212 ATCGGACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21224353 original size:910 final size:906
Alignment explanation
Indices: 21222386--21225699 Score: 4763
Period size: 910 Copynumber: 3.6 Consensus size: 906
21222376 TGTGATGGGT
* * * * *
21222386 ATTAAAGTATCTAAAATGGGGACACTTTTATCAAATGGTCACAAAATCTTGTACATTTTGAGTTT
1 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* *
21222451 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACGAAGTTTGGGGCCA
66 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* * * * *
21222516 AAAATCCTTCCGAAAGAATTTTAAAAAATCCTGAACCTCAAAAAGTTTCAAAAATCATGAAAAAT
131 AAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAAAT
21222581 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
196 AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
** * *
21222646 AAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCCACCGACCACTCTA
261 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTA
* * *
21222711 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTTGT
326 TCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCAGGCGTAGTGCCCGCCCGCCCGCCCGCTCGT
* * *
21222776 TTCGTCGGTTGGCTTAGGCGTAGGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCAAGGGTTG
391 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTG
* *
21222841 CAGCAGCAGGATCGATAGCACACAGAGGGGGACTCGACTGATCCTCGGCTTGCGCATCCCGCCCC
456 CGGCAGCAGGATCGATAGCACACAGAGGGGGACTCGACCGATCCTCGGCTTGCGCATCCCGCCCC
** * * * * *
21222906 TCTGGCAAGCTGAGCACCGACACACTCGTTTCGTGGGTTGACGTAGGCATACGGAGTTTATTCCC
521 TCTGGCCGGCTGAGCGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* *
21222971 AATCTAATCTTACGAATTTTATTCCCAGTCTAAGATCGGACCGTACCGAGGGTTACTACAGCACA
586 AATCTAATCTTACGAATTTCA-TCCCAGTCTAAGATCGGACCGTACCGAGGGTT-GTACAGCACA
*
21223036 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCAAAG
649 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATTGCCAGAGC-AAG
* * * * ** *
21223101 CCGGAGCATCACCGGAGAACTTGACCGGCGACATTGGGGTTCCGACGATCTTGGGGGCCGGGGGG
712 CCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGG
* * *
21223166 TGCGCGTACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
777 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
21223231 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
842 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
21223296 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTG
1 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * * *
21223361 TTAGCTGAATTTTTGTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAACTTTGCGGCCA
66 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
* ** *
21223426 AAACTCCTT-TGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTCGAAAATCATGAAAAA
131 AAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAG-TTTCGAAAATCATGAAAAA
*
21223490 TAGAAAACGAGTCATCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
195 TAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
*
21223555 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACAGACCACCCT
260 CAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCT
* * *
21223620 ATCGATCCACGGCTTGCGCATCCCATCTCTCTGGTC-GGCGTAGTGCCCGCCTGCCCGCCCGCTC
325 ATCGATCCACGGCTTGCGCATCCCGTCTCTCTAG-CAGGCGTAGTGCCCGCCCGCCCGCCCGCTC
* * * *
21223684 GTTTTGTCGGTTGGCTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATCAAATCAGACCGAGGGT
389 GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGT
* * * * *
21223749 TACGGCAGCAGGATTGATAACACATAGAGGGGGACTCGATCGATCCTCGGCTTGCGCATCCCGCC
454 TGCGGCAGCAGGATCGATAGCACACAGAGGGGGACTCGACCGATCCTCGGCTTGCGCATCCCGCC
* * ** * *
21223814 CCTCTGGCCGGCTAAACGTTGGCACGCTCGTTTCGTGTGTTCACTTAGGCATACGGAGTTCATTC
519 CCTCTGGCCGGCTGAGCGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
* ***
21223879 CCAATCTAATCTTAGGAATTTCATCCCAGTCTAAGATCGGAAATTACCGAGGGTTGTGACAGCAC
584 CCAATCTAATCTTACGAATTTCATCCCAGTCTAAGATCGGACCGTACCGAGGGTTGT-ACAGCAC
*
21223944 ATCCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGCCAGAGCATA
648 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCGGGGCACCATTGCCAGAGCA-A
*
21224009 GCCAGAGCATCGCCGGAGCACCTGACCGGCGGCATTGGGGTTCC-AGCGATC-GGGGGGTCGGGG
711 GCCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGTCGGGG
*
21224072 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTA
775 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* * * *
21224137 TCAAACC-CGAGAACTCACCCCCCCTTAAAGAGCATTTGAGATATTACAGGTTTGCTGCTAGTAA
840 TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
21224201 CC
905 CC
*
21224203 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACCAAATCTTGTACACTTCGAGTTT
1 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
* * *
21224268 TTAGCTGAATTTTTTTTTTTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGGC
66 TTAGCTGAA--TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
* * * * *
21224333 CAAAAATCCTTCTAAAAAAATTTT-AAAAATCCCGAACCACAAAAAGTTTTGAAAACCGTAAAAA
129 CAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAA
*
21224397 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
194 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * * * * * **
21224462 ACATGCGATAAAAAAGGAATTGACACATAGAAATATGAAGATGTGCCTAAAGCCACCTCCCACCC
259 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCC
* *
21224527 TATCGATCCACGGCTTTCGCATCCCGTCTCTCTAGCAGGCGTAGTGCCCACCCGCCCGCCCACCC
324 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCAGGCGTAGTG----CCCGCCCGCCCGCCC
* **
21224592 GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAA
385 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAA
* * * *
21224657 GGGTTGCGGTAGCAGGATCGATAGCACACAGAGGGGGACTCGACCGATCCCCGACTTGCACATCC
450 GGGTTGCGGCAGCAGGATCGATAGCACACAGAGGGGGACTCGACCGATCCTCGGCTTGCGCATCC
* * * * * *
21224722 CACCTCTCTGGTCGACTGAGCGCCCGCACGATCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
515 CGCCCCTCTGGCCGGCTGAGCGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * * * * *
21224787 ATTCCCAATCTAAGCATACGAAATTCTTTCCCAGTCTAAGATGGGACCGAACCGAGGGTTGCAGC
580 ATTCCCAATCTAATCTTACGAATTTC-ATCCCAGTCTAAGATCGGACCGTACCGAGGGTTGTA-C
* * *
21224852 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTCTCTTCGCTAGGGCACCA-T--C--A
643 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTC-GGGGCACCATTGCCAGA
* * *
21224912 -C---CGA-AGCATCGTCGGAGAACCTGACCGGCGGCATTGGCGTTCCGACGATCGGGGGGGTCG
707 GCAAGCCAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCG
21224972 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
772 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
21225037 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
837 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
21225102 TAGCC
902 TAGCC
*
21225107 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTT
1 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
*
21225172 TTAGCTGAA-TTTTTTGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCC
66 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGGCC
* * *
21225236 AAAAATCCTTTTCGAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTCGAAAATAATGAAAA
130 AAAAATCCTTCT-GAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAA
* * **
21225301 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCCCAAGGGACCATTGTATGAATTT
194 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* * * *
21225366 ACAAGCCATAAAAATGGCATTGGTACGCAGAATTATGAAGATGTGCCTAAACCCACCTACCACCC
259 ACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCC
* * *
21225431 TATCGATCCAAGGCTTGCGCATCCCGTCTCTCTAGCTGACGTAGTGCTCGCCCGCCCGCCCACCC
324 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCAGGCGTA--G-T-GCCCGCCCG----CCC
* * * * ** *
21225496 GCCTGCTCGTTTCGTCGATTGGCTTAGGCATATGGAGTTAATTCCCAGTCTAAGATCGGACCGGA
381 GCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGA
* * * * * *
21225561 TCGAGGGTTGTGGCAGCAGGATCGATAGCACGCAAAGGGGGACCCGACCGATCCTCGGCTTGCGC
446 CCAAGGGTTGCGGCAGCAGGATCGATAGCACACAGAGGGGGACTCGACCGATCCTCGGCTTGCGC
* * * * *
21225626 ATCCTGCCCCTCTGGTCGGCTGAGCGTCGGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGAA
511 ATCCCGCCCCTCTGGCCGGCTGAGCGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
21225691 GTTCATTCC
576 GTTCATTCC
21225700 TAGTCTAAGA
Statistics
Matches: 2156, Mismatches: 218, Indels: 62
0.89 0.09 0.03
Matches are distributed among these distances:
901 46 0.02
902 57 0.03
903 96 0.04
904 324 0.15
906 1 0.00
907 130 0.06
908 437 0.20
909 247 0.11
910 532 0.25
911 1 0.00
912 205 0.10
913 80 0.04
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.25
Consensus pattern (906 bp):
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCGAAAATCATGAAAAAT
AGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTAGCAGGCGTAGTGCCCGCCCGCCCGCCCGCTCGT
TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTG
CGGCAGCAGGATCGATAGCACACAGAGGGGGACTCGACCGATCCTCGGCTTGCGCATCCCGCCCC
TCTGGCCGGCTGAGCGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
AATCTAATCTTACGAATTTCATCCCAGTCTAAGATCGGACCGTACCGAGGGTTGTACAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCGGGGCACCATTGCCAGAGCAAGCCAG
AGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
Found at i:21224817 original size:26 final size:26
Alignment explanation
Indices: 21224774--21224826 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21224764 GTTGACTTAG
* *
21224774 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAATTCATTCCCAATCTAA
* *
21224800 GCATACGAAATTCTTTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAATCTAA
21224826 G
1 G
21224827 ATGGGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAATCTAA
Found at i:21225794 original size:159 final size:159
Alignment explanation
Indices: 21225500--21225867 Score: 493
Period size: 159 Copynumber: 2.3 Consensus size: 159
21225490 CCACCCGCCT
* * * * *
21225500 GCTCGTTTCGTCGATTGGCTTAGGCATATGGAGTTAATTCCCAGTCTAAGATCGGACCGGATCGA
1 GCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * *
21225565 GGGTTGTGGCAGCAGGATCGATAGCACGCAAAGGGGGACCCGACCGATCCTCGGCTTGCGCATCC
66 GGGTTGCGGCAGCAGGATCGACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCACATCC
* * ** * *
21225630 TGCCCCTCTGGTCGGCTGAGCGTCGGCAC
131 CGCCCCTCTGGCCCACTGAGCGCCCGCAC
* * * *
21225659 GCTCGTTTCGTTGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAAGATCGGACTGGACCGA
1 GCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
* * * * * *
21225724 GGGTTGCGGCAGCAGGATTGGCAGCATGCAGAGGGGGACCTGACCGATCCCCGTCTTGCACATCC
66 GGGTTGCGGCAGCAGGATCGACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCACATCC
*
21225789 CGCCCCTCTGGCCCACTGAGCGCCCGTAC
131 CGCCCCTCTGGCCCACTGAGCGCCCGCAC
*
21225818 GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 GCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
21225868 CATACAGAGT
Statistics
Matches: 180, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
159 180 1.00
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.23
Consensus pattern (159 bp):
GCTCGTTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGA
GGGTTGCGGCAGCAGGATCGACAGCACGCAAAGGGGGACCCGACCGATCCCCGGCTTGCACATCC
CGCCCCTCTGGCCCACTGAGCGCCCGCAC
Found at i:21225870 original size:26 final size:26
Alignment explanation
Indices: 21225841--21225892 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
21225831 GTTGACTTAG
*
21225841 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21225867 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21225893 AATTGGATCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21226842 original size:159 final size:159
Alignment explanation
Indices: 21226629--21226916 Score: 364
Period size: 159 Copynumber: 1.8 Consensus size: 159
21226619 GAGGGTTGCG
* * *
21226629 ACAGCAGGATCGGCAGCACACAGAAGGGGACCCAATCGATCCTCGACTTACGCATCCCACCCCTA
1 ACAGCAAGATCGGCAGCACACAGAAGGGGACCCAACCGATCCCCGACTTACGCATCCCACCCC-A
* * * *
21226694 -TGGCCGGCTGAGCGCCCGAACGCTCCTTTCGTGGGTTGACTTAGGCATACAGG-GTTCATTCCC
65 CTGGCCGGCTGAGCGCCCGAACGCTCATTTCATAGGTTAACTTAGGCATAC-GGTGTTCATTCCC
21226757 AGTCGAAGATCGAATCGGACCGAGATTTCTA
129 AGTCGAAGATCGAATCGGACCGAGATTTCTA
* * * ** * **
21226788 ACAGCAAGATCGGTAGGACACAGAGGGGGACCCAACCGATCCCCGTTTTGCGCATCCTGCCCCAC
1 ACAGCAAGATCGGCAGCACACAGAAGGGGACCCAACCGATCCCCGACTTACGCATCCCACCCCAC
* * * * *
21226853 TGGTCGGCTGAGTGCCCGCATGCTCATTTTATAGGTTAACTTAGGCATACGGTGTTCATTCCCA
66 TGGCCGGCTGAGCGCCCGAACGCTCATTTCATAGGTTAACTTAGGCATACGGTGTTCATTCCCA
21226917 ATCTAAGCAT
Statistics
Matches: 107, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
158 3 0.03
159 104 0.97
ACGTcount: A:0.23, C:0.30, G:0.26, T:0.21
Consensus pattern (159 bp):
ACAGCAAGATCGGCAGCACACAGAAGGGGACCCAACCGATCCCCGACTTACGCATCCCACCCCAC
TGGCCGGCTGAGCGCCCGAACGCTCATTTCATAGGTTAACTTAGGCATACGGTGTTCATTCCCAG
TCGAAGATCGAATCGGACCGAGATTTCTA
Found at i:21227652 original size:26 final size:26
Alignment explanation
Indices: 21227615--21227667 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21227605 ATTGACTTTG
21227615 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
21227641 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21227667 G
1 G
21227668 ATCGCACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21229241 original size:26 final size:27
Alignment explanation
Indices: 21229200--21229250 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
21229190 TGTGTGTTGA
*
21229200 CTTAGGCATACGGAGTTCATTCCCAAT
1 CTTAGGCATACAGAGTTCATTCCCAAT
21229227 CTTA-GCATACAGAGTTCATTCCCA
1 CTTAGGCATACAGAGTTCATTCCCA
21229251 GTATAAGATC
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 19 0.83
27 4 0.17
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (27 bp):
CTTAGGCATACAGAGTTCATTCCCAAT
Found at i:21230787 original size:903 final size:892
Alignment explanation
Indices: 21228608--21231495 Score: 4024
Period size: 891 Copynumber: 3.2 Consensus size: 892
21228598 TTTCTTCATC
* *
21228608 GATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
21228673 TCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTTGTGCATTCCAAAAAAAATACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
21228738 GGC-TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACC
131 -GCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACC
** *
21228802 GCAAAAAGTTTCCAAAATTATGAAAAATATAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
195 GCAAAAAGTTT-CAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * *
21228867 GGCTTAAGGGACCATTGTATGAATTTTCAAGCCGTAAAAATGGCATTGGCACGCAGAAATATGAA
259 GGCTTAAGGGACCATTGTATGAATTTACAAGCC-AAAAAATGGCATTGGCACGTAGAAATATGAA
* * * * *
21228932 GATGTGCCTAAACCCACCTACCGCCCTATCGATCCAAGGCTTGCGAATCCCGTCTCTTTGGCCGA
323 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * *
21228997 CGTAGTGCCCGCCCGTCCACCCGCCCACTCGTTTCATCGGTTGGCTTAAGCATACGGAGTTCATT
388 CGTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT
* * * *
21229062 CCCAGTCTAAGATCGGACCGCACCAAGGGTTGTGGCAGCAGGATCGGCAGCACACAAAAGAGGAC
453 CCCA-TCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAAGGGGAC
* * ** *
21229127 CCAGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCACCCGCACACTCGTTTTG
517 CCAGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGATTGAGCGCCCGCACGTTCGTTTCG
* * * * *
21229192 TGTGTTGACTTAGGCATACGGAGTTCATTCCCAATCTTAGCATACAGAGTTCATTCCCAGTATAA
582 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
21229257 GATCGGATCGGACAGAGGGTTAAGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTT
647 GATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTT
* * * * *
21229322 TTCTTCACCGGGGCACCATCGTCGAA--G-AACCTGACTGGCAGTAATAGGGTTCTGGCGATCGG
712 TTCTTCACCGGGGCACCATCGTCGAACGGAAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGG
21229384 GGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
777 GGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
** * *
21229449 CCTATCCCTCATCAAACCTCAAGAACTCACACCCTCTTAAAGAGCTTTTGA
842 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
21229500 GATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGTGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * *
21229565 TCACAAAATCTTGTACACTTCGAGTTTTTAACTGAACTTTTTTGTGCACGCCAACAAAATTACAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * * *
21229630 GGATCATGTCTACCAAGTTTGCGGCCAAAAATCCTTCCGAAAAAA-TTTAAAAAATCCCGAACCG
131 GCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCG
*
21229694 CAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
196 CAAAAAG-TTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
21229759 GCTTAAGGGACGATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCACGTAGAAATATGAAG
260 GCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATGGCATTGGCACGTAGAAATATGAAG
* * * *
21229824 ATGTACCTAAACCCACGTACCACGCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGGC
324 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
* * * * * *
21229889 GTAGTGCTCGCCCGCCCGCCCGCCCGCTCATTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTC
389 GTAGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
21229954 CCATTCTAAGATCGGACCGAACCGAGGGTTGTGGCAGTAGGATCGGTAGGACACAGAAGGGGACC
454 CCA-TCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAAGGGGACC
* * * * * * * * *
21230019 CAGTTGATCCCCAGCTTGTGCATCCGGCCCCTCGGGCCGACTCAACGCCCGCATGTTCGTTTCAT
518 CAGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGATTGAGCGCCCGCACGTTCGTTTCGT
* * * *
21230084 GGGTTGACTTAGGCATACGAAGTTCATTCCCGGTCTAAGCATGCGGAGTTCATTCCCACTCTAAG
583 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
21230149 ATCAAACCAGACCGAGGGCTGCGGTAGCACATGTTGGGCTCGAGCATGTGCTGGTGTCGTATTTT
648 ATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTT
* * * * *
21230214 TCTTCCCCGAGGCACCATCGTCGGAGTATCGTCGAAAAACCTGACCGACGGCATTGGGGTTCCGA
713 TCTTCACCGGGGCACCATCGTC-GA--A-CG--G--AAACCTGACCGGCAGCATTGGGGTTCCGG
* *
21230279 CGATCGGGGGGTCGGGGGGGTGTGCGCACATGATGTGCCATGGGTGCTGGTACTTGGCCCTTATA
770 CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATA
21230344 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
835 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
21230402 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAATGGGGACACTTTTTTCAAATG
1 GATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATG
* * * *
21230467 GTCACAAAATCTTGTACACTTC-ATGTTTTTAGCTGAAGTTTTTTATGAATGCCAACAAAAATAC
65 GTCACAAAATCTTGTACACTTCGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATAC
*
21230531 AAGCATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCCT-AAAAAATTTTAAAAAATCCCGAA
129 AAGCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CTGAAAAAATTTTAAAAAATCCCGAA
* *
21230595 CCGTAAAAAGTTTCAAATATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA-GAAACTTCACGTG
193 CCGCAAAAAGTTTCAAA-ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
21230659 AAGGCTTAAGGGACCATTGCATGAATTTACAAGCCAAAAAATTGGCATTTGCACGTAAAAATATG
257 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAA-TGGCATTGGCACGTAGAAATATG
*
21230724 AAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
321 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC
* *
21230789 GGCGTAGTGCCCGCCCGTCTGCCTGCCTGCCCACCCATTCGTTTCTTCGGTTGGCTTAGGCATAC
386 GGCGTAGTGCCCGCCCG-C--CC-GCCCGCCCA--C--TCGTTTCATCGGTTGGCTTAGGCATAC
* * * *** *
21230854 GGAGTTCATTCCCATCTAAGATTGGA-CTAGACTGAGGGTTGCAACAGCAGGATCGACAGCACAC
443 GGAGTTCATTCCCATCTAAGATCGGACCGA-ACCGAGGGTTGTGGCAGCAGGATCGGCAGCACAC
* * * * * * * * *
21230918 AGAGGGGGACTCGGTCGATCCCTGGCATGCGCATCCCGCCCCTTTGGCTGATTGAGTGCCCGCAC
507 AGAAGGGGACCCAGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGATTGAGCGCCCGCAC
*
21230983 GCTT-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACGGAGTTCAT
572 G-TTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * **
21231047 TCCCAGTCTAAGATCAGACCGGACCAAGGGTTTCGACAGCACATGCTGGGCTCGGGCATGTGCTG
636 TCCCAGTCTAAGATCAGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTG
* ** * * *
21231112 GTGCCGTATTTTTCTTCGTCGGGGCACCAACG-C---CGGAGAACTTGACCGGCTGCATTGGGGT
701 GTGTCGTATTTTTCTTCACCGGGGCACCATCGTCGAACGGA-AACCTGACCGGCAGCATTGGGGT
*
21231173 TCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
765 TCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCC
* *
21231238 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAAAACTCACACCCCCTTAATGAGCATTTGA
829 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
21231302 GATTTTACAGGTTTGCTGCCAGTAGCCACCAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * *
21231366 TCAAAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATGCAA
66 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * *
21231431 GGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCG
131 GCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCG
21231496 TGCTAATTCA
Statistics
Matches: 1758, Mismatches: 204, Indels: 62
0.87 0.10 0.03
Matches are distributed among these distances:
891 486 0.28
892 163 0.09
894 1 0.00
897 2 0.00
898 136 0.08
899 34 0.02
900 152 0.09
902 182 0.10
903 268 0.15
904 59 0.03
906 2 0.00
907 7 0.00
909 4 0.00
910 223 0.13
911 39 0.02
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (892 bp):
GATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
GCATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCG
CAAAAAGTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAATGGCATTGGCACGTAGAAATATGAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
AGTGCCCGCCCGCCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
ATCTAAGATCGGACCGAACCGAGGGTTGTGGCAGCAGGATCGGCAGCACACAGAAGGGGACCCAG
TCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGATTGAGCGCCCGCACGTTCGTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCGGACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCT
TCACCGGGGCACCATCGTCGAACGGAAACCTGACCGGCAGCATTGGGGTTCCGGCGATCGGGGGG
CCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
Found at i:21231045 original size:26 final size:26
Alignment explanation
Indices: 21231009--21231058 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
21230999 GACTTAGGCA
21231009 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
21231035 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
21231059 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:21231881 original size:26 final size:26
Alignment explanation
Indices: 21231851--21231903 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21231841 GTTAACTTAG
*
21231851 GCATACGGACTTCATTCCCAGTTTAA
1 GCATACGGACTTCATTCCCAGTCTAA
* *
21231877 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGACTTCATTCCCAGTCTAA
21231903 G
1 G
21231904 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCCCAGTCTAA
Found at i:21232780 original size:26 final size:26
Alignment explanation
Indices: 21232751--21232829 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
21232741 GTCGACTTAG
21232751 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21232777 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21232803 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21232829 G
1 G
21232830 ATTGGATCGG
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 52 1.00
ACGTcount: A:0.28, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21233299 original size:26 final size:27
Alignment explanation
Indices: 21233255--21233305 Score: 77
Period size: 26 Copynumber: 1.9 Consensus size: 27
21233245 AAACCTGCTT
* *
21233255 CCAAAAAATTTTAAAAAATCCTGAACC
1 CCAAAAAATTATAAAAAATCATGAACC
21233282 CCAAAAAATTAT-AAAAATCATGAA
1 CCAAAAAATTATAAAAAATCATGAA
21233306 AAATAGAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 11 0.50
27 11 0.50
ACGTcount: A:0.57, C:0.18, G:0.04, T:0.22
Consensus pattern (27 bp):
CCAAAAAATTATAAAAAATCATGAACC
Found at i:21233722 original size:26 final size:26
Alignment explanation
Indices: 21233686--21233738 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21233676 GTTGACTTAG
*
21233686 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21233712 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21233738 G
1 G
21233739 ATCGACCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21235439 original size:26 final size:26
Alignment explanation
Indices: 21235405--21235454 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21235395 GACTTAGGCG
*
21235405 TACGAAGTTCATTCCCAGTCTAAGCA
1 TACGAAGTTCATTCCCAATCTAAGCA
*
21235431 TACGGAGTTCATTCCCAATCTAAG
1 TACGAAGTTCATTCCCAATCTAAG
21235455 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.16, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAATCTAAGCA
Found at i:21235960 original size:896 final size:892
Alignment explanation
Indices: 21234213--21237145 Score: 3817
Period size: 897 Copynumber: 3.3 Consensus size: 892
21234203 GGCTTAAGGG
21234213 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
1 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
21234278 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCAGCCCGCCCGTCCACTCATTTCGTCCGTTCGCT
66 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCC-T--GCTCATTTCGT-CGTTGGCT
* * * * ** *
21234343 TAGGCATACGGAGTTCATTCCCAGTCTAAAATCAGA-CCGAACCGAGGATTGCAGTAGCAAGATC
127 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAGCAG-ACCGAGGGTTGTGGCAGCAAGATC
*** * * * * *
21234407 GGTAGCACATAGAGGGGGACTCTATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
191 GGTAGCATGCAGAGGGGGACCCGACCAATCCCCGG-TTGTGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
21234472 GCGCCCGTACGCTCATTTCGTGGGTGGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
255 GCGCCCGTACACTCGTTTC-TGTGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATAC
** * * * * *
21234537 AAAGTTCATTCCCAATCTACGATCGGACCGGATCGAGGGTTGTAGCAGCACATGCTGGGCTCGAG
318 GGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
* * * * * * * *
21234602 CATGCGCTGGTGCTGTATTTTTCTTCACAGAGGCACCATTGTCGGAGCATC-ATCGAAGAACCTG
383 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCA-TGTCGGAGCATCGCT-GGAGAACCTG
* * * * * **
21234666 ACTGTCAGCATTGGGGTTCTGGTGATCGGGGGCCGGGGGGTGTGCACACACGATGTAAGATGGGT
446 ACAG-CGGCATTGGGGTTCCGATGATCGGGGGCC-GGGGGTGTGC-C-CATGATGTGCGATGGGT
* * *
21234731 GCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCACTT
507 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
21234796 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTGAAGTGTCTG-AATGGGGACAC
572 AAAGAGCATTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACAC
** * * **
21234860 TTTTTTCAAATGGTCACAAAATCATGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGGA
637 TTTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCC
* ** *
21234925 AACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGGTAAAACTCCTTCTGAAAAAATTCTAAA
702 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAA
* * * * * * *
21234990 AAATCCCAAATCGCATAAAGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTATTGCCATGAA
767 AAATCCCGAACCGCAAAAAGTTT-GAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
21235055 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGCATTGGC
831 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCAAAAAAATGGCATTGGC
21235117 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT-C
1 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
21235181 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCTGCTCGTTTCGTCGTTGGCTTAGG
66 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCTGCTCATTTCGTCGTTGGCTTAGG
* * * *
21235245 CTTACAAAGTTCATTCCCAATCTAAGATCGGAGCAGACCGAGGGTTGTGGCAGCAAGATCGGTAG
131 CATACAGAGTTCATTCCCAGTCTAAGATCAGAGCAGACCGAGGGTTGTGGCAGCAAGATCGGTAG
* *
21235310 CATGCAGAGGGGGACCCGACCAATCCCCAAGTTGTGCATCTCGCCCCTCTGGCCGGCTGAGCG-C
196 CATGCAGAGGGGGACCCGACCAATCCCC-GGTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* *
21235374 CGCACACTCGTTTCATGTGTTGACTTAGGCGTACGAAGTTCATTCCCAGTCTAAGCATACGGAGT
260 CGTACACTCGTTTC-TGTGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACGGAGT
*
21235439 TCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGT
323 TCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGT
* *
21235504 GCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCTGGAGAACCTGACCAGC
388 GCTGGTGCCGCATTTTTCTTCGCCGGGGCACCAT-GTCGGAGCATCGCTGGAGAACCTGA-CAGC
* * * **
21235569 GGCATTGGGCTTCCGACGATCGGGGGGCCGGGGGTGTGCCCATGACGTGCGATGGGTGCCAGTAC
451 GGCATTGGGGTTCCGATGATC-GGGGGCCGGGGGTGTGCCCATGATGTGCGATGGGTGCTGGTAC
* **
21235634 TTGGCCCTTATTTTGGCCCGTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
515 TTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
* *
21235699 TTTTAGATTTGACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCA
580 TTTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCA
* *
21235764 AATGCTCACAAAATGTTGTACACTTCTAGTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAAAA
645 AATGGTCACAAAATGTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAAAA
** *
21235829 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAAGCCTTCTGAAAAAATTTTAAAAAATCTCG
710 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCG
21235894 AACCGCAAAAAGTCTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
775 AACCGCAAAAAGT-TTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
21235959 TGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCGATAAAAATGGCATTGGC
839 TGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCAAAAAAATGGCATTGGC
* *
21236013 A-GATAGAAATAGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCTCATC
1 ACG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
21236077 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCG-CC-ACCTGCTCATTTTGTCGGTTGGCTTA
65 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCTGCTCATTTCGTC-GTTGGCTTA
* * *
21236140 GGCTTACAGAGTTCATTCCCAGTCTTAGATCAGAGCAGACCAAGGGTTGTGGCAGCAAGATCGGT
129 GGCATACAGAGTTCATTCCCAGTCTAAGATCAGAGCAGACCGAGGGTTGTGGCAGCAAGATCGGT
21236205 AGCATGCAGAGGGGGACCCGACCAATCCCCGGGTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCG
194 AGCATGCAGAGGGGGACCCGACCAATCCCC-GGTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
21236270 CCCGTACTCTCGTTTC-GTG-TG--TTA-ACTTA-G-G--C-TTCCTAGTCTTAGCATACGGAGT
258 CCCGTACACTCGTTTCTGTGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGT
* * *
21236325 TCATTCCCAGTCTAGGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATTT
323 TCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGT
* * * *
21236390 GCTGGTGCCGCATTTTTCTTCGCCAGGGCACTAATGTCGGAGCATCGCTAGAGAACCTGATCGGC
388 GCTGGTGCCGCATTTTTCTTCGCCGGGGCAC-CATGTCGGAGCATCGCTGGAGAACCTGA-CAGC
* * * * * *
21236455 GGCATTGGGGTTTCGATGATC-GGGG--GGGTGTGCGCACATGATGTGCGATGGGTGGTGGCACT
451 GGCATTGGGGTTCCGATGATCGGGGGCCGGGGGTGTGCCCATGATGTGCGATGGGTGCTGGTACT
* * *
21236517 TGGCCCTTAAATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCAT
516 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCAT
* * *
21236582 TTGATATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAATGGAGACACTTTTTTCAA
581 TTGAGATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAA
*
21236647 ATGGTCACAAAATGTTGTACACTTCGATTTTTGAGCTGAATTTTTTTGTGCATGCCAA-AAACAA
646 ATGGTCACAAAATGTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAA-AA
* **
21236711 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCGTTCCAAAAAAATTTTAAAAAATCCCG
710 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCG
* *
21236776 AACCGTAAAAAATTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT-AAACTT--CG
775 AACCG-CAAAAAGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
21236838 TGAAGGCTTAAGGGACCATTGTATGAATTTAAAAAGCCATAAAAAAT-GC-TTGGC
839 TGAAGGCTTAAGGGACCATTGTATGAATTT-AAAAGCCA-AAAAAATGGCATTGGC
* * * * *
21236892 ACGT--AAATAAGAAGAT-TACCTAAAGCCACCTACCACCCTATCGATCCATGGCTTGCGCATCT
1 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * *
21236954 CGTCTCTCTGACCAGCGTAGTGCCCGCCCGTCCGCCCGTCC-GCTCGTTTCGTCGATTGGCTTAG
66 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCTGCTCATTTCGTCG-TTGGCTTAG
* * ** * * * * *
21237018 GCATACGGAGTTCATTCCCAGTCTAAGATTAGA-CAAGATTGAGGGTTGCGGTAGCATGATTGCT
130 GCATACAGAGTTCATTCCCAGTCTAAGATCAGAGC-AGACCGAGGGTTGTGGCAGCAAGATCGGT
* * * ** ** * ** *
21237082 AGCACGTAAAGGGGGACGAGGTCGATCCCCGGCTTGCACATTCCGCCCCTCTGGCCGGCTGAGC
194 AGCATGCAGAGGGGGACCCGACCAATCCCCGG-TTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
21237146 TCCCACATGG
Statistics
Matches: 1803, Mismatches: 201, Indels: 77
0.87 0.10 0.04
Matches are distributed among these distances:
876 75 0.04
877 132 0.07
878 2 0.00
879 39 0.02
880 10 0.01
881 15 0.01
882 309 0.17
883 6 0.00
884 4 0.00
886 155 0.09
887 3 0.00
889 1 0.00
891 1 0.00
892 3 0.00
893 3 0.00
895 121 0.07
896 319 0.18
897 354 0.20
898 136 0.08
899 12 0.01
901 1 0.00
902 2 0.00
903 37 0.02
904 63 0.03
ACGTcount: A:0.25, C:0.26, G:0.24, T:0.25
Consensus pattern (892 bp):
ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCTGCTCATTTCGTCGTTGGCTTAGG
CATACAGAGTTCATTCCCAGTCTAAGATCAGAGCAGACCGAGGGTTGTGGCAGCAAGATCGGTAG
CATGCAGAGGGGGACCCGACCAATCCCCGGTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
GTACACTCGTTTCTGTGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
TTCCCAATCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCT
GGTGCCGCATTTTTCTTCGCCGGGGCACCATGTCGGAGCATCGCTGGAGAACCTGACAGCGGCAT
TGGGGTTCCGATGATCGGGGGCCGGGGGTGTGCCCATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGATGCCAGTAGCCATTAAAGTGTCTGAAATGGAGACACTTTTTTCAAATGGT
CACAAAATGTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGC
AAAAAGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTAAAAGCCAAAAAAATGGCATTGGC
Found at i:21240492 original size:26 final size:26
Alignment explanation
Indices: 21240462--21240511 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
21240452 GTTGACTTAG
21240462 GCATACGGAGTTCATTCCCAGTCTGA
1 GCATACGGAGTTCATTCCCAGTCTGA
21240488 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
21240512 AAGATCGGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.22, C:0.28, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTGA
Found at i:21242320 original size:26 final size:26
Alignment explanation
Indices: 21242284--21242333 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
21242274 GACTTAGGTA
21242284 TACGGAGTTCATTCCCAGTCTAAGCC
1 TACGGAGTTCATTCCCAGTCTAAGCC
21242310 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
21242334 ATTGGACTGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCC
Found at i:21242941 original size:893 final size:894
Alignment explanation
Indices: 21239928--21244828 Score: 6287
Period size: 893 Copynumber: 5.5 Consensus size: 894
21239918 NNNNNNNACA
* * * * *
21239928 ACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGACTTTTTATCTGAATTCTTTTGCGCATG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
*
21239993 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAACTCCTTCC-AAAAAAGTTTA
66 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTA
* * * * *
21240057 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCATCTTGCCATG
131 AAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
21240122 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACATTG-CATAAAAATGGCATTGGG
196 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA-AGCCATAAAAATGGCATTGGC
* * * * *
21240186 ATGCAGAAATATGAAGACGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGTGCATCC
260 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * ** *
21240251 CGTCTCTCTAGTCGACGTAGTGCCCG---GCT-GCTCATTTTTTCGGTTGGCTTAGGCATACGAA
325 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * **
21240312 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGGCAGCACGTAGA
390 GTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGGCAGCACACAGA
* * **
21240377 GGGGGACCTGGCCGATCCCCAGCTTGCGCATCCTGCCCCTCTGG-CGGCTGAAGCGCCCGCTTGC
455 GGGGGACCT-GCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG-AGCGCCCGCACGC
* * *
21240441 TCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGCATACGGAGTTCATTCC
518 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
21240506 CAGTCTAAGATCGGACCAGACCGAGGGTTGGGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTG
583 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * * *
21240571 CCTCATTTTTCTTCGCCGTGGCACTATCACCGGAGCATCACCGGAGAACCTGACCGAGCGGTATT
648 CCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCG-GCGGCATT
* * *
21240636 GGGGTTCC-AGCGATCGGAGGGGTCGGGGGGGTGTGCGCACATGATGTGCGAATGGGTGCTGGTA
712 GGGGTTCCGA-TGATCGG-GGGGGCCGGGGGGTGTGCGCACATGATGTGCG-ATGGGTGCTGGTA
* * *
21240700 CTTGGCCTTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACACCCCTTTAAAGAGC
774 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* *
21240765 ATTTGAGAATTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGAC
839 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
21240821 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTT-GTCTGAATTTTTTTGTGCAT
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG-CTGAATTTTTTTGTGCAT
*
21240885 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAGAACTCCTTCC-AAAAAAGTTT
65 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTT
* * * * *
21240949 AAAAAATCCCAAACCGTAAAAAGTTTCGAAAATCGTGAAAAATAGAAAATGACTCATCTTGCCAT
130 AAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
21241014 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGATTTTACATGCCATAAAAATGGCATTGGC
195 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
21241079 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATACACGGCTTGTGCATCC
260 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
21241144 CATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCTTGCCCACTCGTTTCGTCGATTGGCTT
325 CGTCTCTCTGGCCGACGTAGT----G--C-CCGCCCGC-T---CGCTCGTTTCGTCGGTTGGCTT
* * * * *
21241209 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGTAGGATCGG
379 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGG
* * * * ** * * * *
21241274 TAGCACGCAGAGGGGGACCCGGTCGATCCTTGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGT
444 CAGCACACAGAGGGGGACCTGCT-GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
* *
21241339 GCCCACACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
508 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
21241404 AGTTCATTCCCAGTCGAAGATCGGACCGGACCGAGGGTTGC-GCAGCAGATGCTGGGCTCGAGCA
573 AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
21241468 TGTGCTGGTTCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACC
638 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC
* *
21241533 GGCGGCATTGGGGTACCAGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGAGGGGGTTGTGCGCA
703 GGCGGCATTGGGGT-TC--C-G-A-T---GAT----CG---GGGGGGCCG-GGGGG-TGTGCGCA
*
21241598 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAG
750 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * * *
21241663 ATAACTCACACCCGCTTAAAGAGCATGTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTATAGT
815 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
21241728 GTCTGAAAATGGGGAC
880 GTCTG-AAATGGGGAC
* *
21241744 ACTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGAGTTTTTACCTGAATTTTTTTGTGCATG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
21241809 CCAACAAAAATACAAAGATGACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTT
66 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTA
* * **
21241873 AAAAATCACAAATCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCACA
131 AAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
21241938 AAACCTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
196 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * * *
21242003 TGCAAAAATATGTAGATGTGCCTAAACCCACCTACCACTCTATCGATCCACGGCTTGCGCATCCC
261 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * *
21242068 GTCTCTCT-GCCGGTGTAGTGCCCGCCCGCTCGCTCGTTTCATCGGTTGGCTCAGGCATACGGAG
326 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** *** * *
21242132 CTCATTCCGAGTCTAAGATCAGACCGAATTGAGGGTTGCAACAGCAGGATGGGCAGCACATAGAG
391 TTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAG
* * **
21242197 GGGGACATGACTGATCCCCGGCTTACGCATCCTAACCCTCTGGCCGGCTGAGCGCCCGCACGCTC
456 GGGGACCTG-CTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* *
21242262 GTTTCGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGCCTACGGAGTTCATTCCCA
520 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * *
21242327 GTCTAAGATTGGACTGGACCGAGGGTTACGGCAGCACATTCTGGGCTCGGGCATGTGTTGGTGCC
585 GTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* * *
21242392 GCATTTTTCTTCGTCGGGGCACCATCACCAGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGG
650 GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGG
* *
21242457 GTTCCGATGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGC
715 GTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
*
21242522 CCTTATATTGGCCCCCTATCCCTCATCAAACCT-GAGAACTCACACCCCCTTAAATAGCATTTGA
780 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
21242586 GATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGAC
845 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
21242636 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGAGCATG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
21242701 CCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAGAAAGTTTA
66 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTA
* * *
21242766 AAAAATCTCAAACCGTAAAAAGTTTCCAAATTCCTGAAAAATAGAAAACGAGTCGTCTTGCCATG
131 AAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
21242831 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
196 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
21242896 CATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTTCGCATCCC
261 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
21242961 GTCTCTCTAGACGACGTAGTGCCCACTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
326 GTCTCTCTGGCCGACGTAGTG--C-C-CGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
** * * *
21243026 GGAGTTCATTCCCAAACTAAGAT-TGAACC-AGACCGAGTGTTGCGGTAGTAGGATCGGCAGCAG
387 GGAGTTCATTCCCAGTCTAAGATCAG-ACCGA-ACCGAGGGTTGCGGTAGCAGGATCGGCAGCA-
* * * * * *
21243089 GA-AGAGGGGGACCCTACCGATCCTCGGCTTACGCATCCCT-CCCCTCTCGCCGGCTGAGCGCCC
449 CACAGAGGGGGA-CCTGCTGATCCCCGGCTTGCGCAT-CCTGCCCCTCTGGCCGGCTGAGCGCCC
* * * *
21243152 GCACGCTCGTTTCATGGGTTGACTTAGGCGTACGGAGTTCATTCCTAGTCTAACCATACGGAGTT
512 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* *
21243217 CATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTG
577 CATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTG
* ** * ** * * * *
21243282 CTCGTGCAACATTTTTCCTCACCGGGGCACCATCGCCGGTGCCTCGTCGAAGAACCTGACCGGCG
642 CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCG
* * *
21243347 GCATTTGGGTTCTGGTGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
707 GCATTGGGGTTCCGATGATCGGGGGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
21243412 CGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
770 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
21243477 GAGCATTTGAGATTTTACTGGTTTGCTGCCAATAGCCATTAAAGTGTTTGTAATGGGGAC
835 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
21243537 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTT-TGCAG
1 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTTGTGCAT
* * *
21243601 GCCAAAAAAAATACAAGTATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTT
65 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTT
* ** * * *
21243665 AAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCCTAAAAAAATAGAAAGCGAGTCGTCTTGCC
130 -AAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGT-GAAAAATAGAAAACGAGTCGTCTTGCC
* * *
21243730 ATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGAATTG
193 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* *
21243795 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCAATCCACGGCTTGCGCAT
258 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
21243860 CCTGTCTCTTTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTTGCCTTAGGCA
323 CCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
21243925 TACGGAGTTCATTGCCAGTCTAAGATCAGA-CTAGACCGAGGGTTGTGGTAGCAGCATCAGCAGC
384 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGA-ACCGAGGGTTGCGGTAGCAGGATCGGCAGC
* * * ** *
21243989 ACACAGAGGGGGACCCGGTCAATCCCCAACTTGCGCAT-CTCGCCCCTCTGGCCAGCTGAGCG--
448 ACACAGAGGGGGACCTGCT-GATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAGCGCC
* * *
21244051 C-CATCGCTCGTTTCGTGGGTTGACTTAGGCATACGTAGTTCATTCCTAGTCTAAGCATATGGAG
511 CGCA-CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
21244115 TTCATTCTCAGTCAAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTTGGGCATG
575 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * *
21244180 TGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATTGCCGGACAACCTGACTGG
640 TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGG
*
21244245 CGGCATTGGGGTT-C------C-----GG-C-----G-AT-----CA--A-----G--GGGTGCT
705 CGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
21244277 GGTACTTGGCCCTTATACTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAA
770 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* *
21244342 GAGCATTCGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
835 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
21244402 ACTTTTTTC-AATGGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTTTATTGTGCAT
1 ACTTTTTTCAAAT-GGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * *
21244466 GCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAATTTT
65 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTT
* * * * ** *
21244531 AAAAAGTCTCGAACCATAGAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCTT
130 AAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
21244596 GAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATAAATTTACAAG-CAGTAAAAATGGCATTGG
195 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGCATTGG
*
21244660 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCCCGGCTTGCGCATC
259 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
21244725 CCGCCTCTCTGGCCGGC-T-GAG--CGCTCG-TACGCTCGTTTCGTGGGTTGACTTAGGCATACG
324 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCT-CGCTCGTTTCGTCGGTTGGCTTAGGCATACG
* * * *
21244785 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCAAAGGTTGCGG
388 GAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGG
21244829 CTGCACATGC
Statistics
Matches: 3547, Mismatches: 385, Indels: 189
0.86 0.09 0.05
Matches are distributed among these distances:
856 68 0.02
857 1 0.00
858 1 0.00
862 1 0.00
863 3 0.00
864 164 0.05
865 263 0.07
866 3 0.00
867 1 0.00
872 1 0.00
874 2 0.00
879 1 0.00
880 1 0.00
887 1 0.00
888 2 0.00
892 127 0.04
893 573 0.16
894 79 0.02
895 5 0.00
896 9 0.00
897 4 0.00
898 324 0.09
899 11 0.00
900 261 0.07
901 219 0.06
902 296 0.08
903 6 0.00
904 2 0.00
906 14 0.00
907 81 0.02
908 217 0.06
909 7 0.00
911 221 0.06
912 95 0.03
914 1 0.00
915 10 0.00
916 1 0.00
918 1 0.00
919 2 0.00
921 6 0.00
922 130 0.04
923 326 0.09
924 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAGTTTA
AAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGCGGTAGCAGGATCGGCAGCACACAGAG
GGGGACCTGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCG
CATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGG
TTCCGATGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
Found at i:21245766 original size:26 final size:26
Alignment explanation
Indices: 21245737--21245789 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21245727 GTTGAGTTAG
* *
21245737 GCATACGGAGTTGATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21245763 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21245789 G
1 G
21245790 GTCAGGCCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21246667 original size:26 final size:26
Alignment explanation
Indices: 21246631--21246683 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21246621 GTTGACTTAG
* *
21246631 GCATACGGAGTTGATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
21246657 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
21246683 G
1 G
21246684 ATCGATTGGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:21247984 original size:902 final size:899
Alignment explanation
Indices: 21244913--21248552 Score: 4794
Period size: 901 Copynumber: 4.1 Consensus size: 899
21244903 AGAGTTGTGG
* *
21244913 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCTCCATCGTCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGG
* * **
21244978 AGCAACGCTGGAGAACCTGACCGAC-AGCATTGGGGTTCCGACGATCGGGGGGCTAGGGGGTGTG
66 AGCATCGCCGGAGAACCTGACCGACGA-CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTG
* **
21245042 CGCACATGATGTGTGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
130 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
21245107 CTTGAGAACTCAC-CCCCTTTAAAGAGCA-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCA-TA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * *
21245169 AAGTGTTTGAAATAGGGACATTTTTTTCAAAT-GTACACAAAATCTTGTACACTTCGAGTTTTTA
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT-CACAAAATCTTGTACACTTCGAGTTTTTA
* * *
21245233 GCTGAATTGTTTTGTGCAAGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
324 GCTG-ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * **
21245298 CTCCTTCCAAAAAAATTTTATAAAAAAATCTTGAATCGTAAAAAGTTTCAAAAATCACGAAAAAT
388 CTCCTTCCAAAAAAA-TTT-T-AAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT
* *
21245363 AGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTAC
450 AGAAAACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
21245428 GAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTA
515 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
** * * * * *
21245493 TCGATCCACGGCTTATGCATACC-ATCTTTCTGGCCGGTGTAGTGCCCGTCCGCCCGCCCGCCCA
580 TCGATCCACGGCTTGCGCAT-CCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-CCCG
* *
21245557 CTCGTTTTGTCGG-TGAGCGTAGGCATACAGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAG
643 CTCGTTTCGTCGGTTG-GCTTAGGCATACAGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * * * * **
21245621 GTTTACGGCAGCAGGATTGGTAGCACGTAAAGGGGGACCCGACCAATCCTCGGCTTGCGCATCTT
707 GGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCC
* * ** * *
21245686 GCCCCTCTAGCCGATTGAGCGCCCGTACGCTCGTTTCATGGGTTGAGTTAGGCATACGGAGTTGA
772 GCCCCTCTGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA
* * ** *
21245751 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGGTCAGG-CCGGACCGAGGGTTGTGG
837 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC-GGATCGGACCGAGGGTTACGA
* ** ** *
21245814 TAGCACATGCTGGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCGTCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGG
** * * * *
21245879 AGCATCATCGGAGAACCTGATCGGCGACATTGGGGTTCCGACGATCGGGGGGGCTGGGGGTGTGC
66 AGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
*
21245944 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-CATCTCATCAAAC
131 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC-CCTCATCAAAC
*
21246008 CTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
195 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * * * *
21246073 AAGTGTTTGAAATGGGGATACTCTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTGG
260 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * **
21246138 CTAAATTTTTTTGTGCATGCCAACAAAAATACAAGCATCACGTCTACCAAGTTTGATGCCAAAAC
325 CT-GATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * **
21246203 TCTTTCCAAAAAAACTTAAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAA
389 TCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
*
21246268 AATGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
454 AACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
21246333 CATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
519 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
21246398 TCCACGGCTTGCGCAT-CTCGTCTCTCTGGCCGGCGTAGT----GCCTGCCCG---CCCGCTCAT
584 TCCACGGCTTGCGCATCCT-GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCCCGCTCGT
* ** * * *
21246455 TTCGTCGGTTGGCTTAGGCATACGGAGTTCCGTCCTAGTCTAAGATCGGATCAGACCAAGGGTTG
648 TTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCC-AGTCTAAGATCAGACCAGACCGAGGGTTG
* * * * * * * ***
21246520 CGGCAGCAAGATTGACAGCATGGAGAGGGGGACCTGATCGATCCCCGACTTGCGCATTGTGCCCC
712 CGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * * * *
21246585 TCTGGCCGGCTGAGCTCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTGATTCCT
777 TCTGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * * * *
21246650 AGTCTAAGCATACAGAGTTCATTCCTAGTCTAAGATC-GATTGGACCGAGGGTTGCGA
842 AGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTACGA
* * * ***
21246707 CAGCACATGCTGCGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTTGTCGGGGCACCATCGTCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGG
* * * * *
21246772 AGCATCGTCGAAGAACCTGACCGACGGCATTAGGGTT-CGGCGATCGGGGGGCCGGGGGGTGTGC
66 AGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
* * ** *
21246836 GCACGTGATGTGCAATGGGTGCTGGTACTTGGGGCTTATATTGGGCCCCTATCCCTCATCAAACC
131 GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
* *
21246901 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCATTAGCCATTAA
196 TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
* * *
21246966 AGAGTCTGAAATGGGCACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGC
261 AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* *
21247031 TGAATTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
326 TGATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
** * * *
21247096 CTTCTGAAAAAATTTTAAAAAATCCCGAACCCCAAAAAGTTTCAAAAATCGT-ACAAAATAAAAA
391 CTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGA-AAAATAGAAA
* * * * *
21247160 ATGAGTCGTCTTGCCATGAAACTGCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACGAGCC
455 ACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
** *
21247225 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGAT
520 ATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
21247290 CCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGCGCCCGCCCGCCCGCCCGTCCGCTCGTT
585 CCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-CCCGCTCGTT
* *
21247355 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCAGCCTACGATCAGACCAGACCGAGGGTTGCG
649 TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCG
* * * * * * *
21247420 GCAGTAGGATCGGGAGCACGCAGAGGGGCACCCTG-TCGATCCTCGGCTTTCGCATCCCGCCCCT
714 GCAGCAAGATCGGCAGCACGCAGAGGGGGACCC-GACCGATCCCCGGCTTGCGCATCCCGCCCCT
* * *
21247484 CTGGCCGACTGAGCGCCCACACGCTCGTTTCGTGAGTTAACTTAGGCATACGGAGTTCATTCCCA
778 CTGGCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCA
* * *
21247549 GTCTAAGCATATGGAGTTCATTCCCAGT-TGAAGATCGGATCGGACCGAGGGTTACGG
843 GTCTAAGCATACGGAGTTCATTCCCAATCT-AAGATCGGATCGGACCGAGGGTTACGA
* * * ** **
21247606 TAGCACAAGCTGGGCTTGGGCATGTGCTGGTGCCATATTTTTCTTCACCGGGGCACCATCACCGG
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGG
* *
21247671 AGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGATGATCGGGAGGGCCGAGTGGGTGT
66 AGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGG-GGGCCG-GGGGGTGT
* * * * *
21247736 GCGCCCATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGGCTCTTATCCCTCATCAAA
129 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * ** * *
21247801 CCTCAAGAACTTACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTTTGCAACTAGCCATT
194 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
21247866 AAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACATAATCTTGTACACTTCGAGTTTTTA
259 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * *
21247931 GCTGATTTTTTTTTACATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGCGCC-AAAC
324 GCTGATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * * *
21247995 TCCATCCGAAAAAATTTTAAAAAATCCTGAACTGCAAAATGTTTCAAAAATCATGAAAAATAGAA
389 TCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * * * * *
21248060 AACGAGTAATCTGGCCATGAAACTTCACGTGAACGCTTAAGGGACCATTGTACGAATTTACAACC
454 AACGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* **
21248125 CATAAAAATGGCGTTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
519 CATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
21248190 TCCACGCCTTGTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCCCCGCTCGTT
584 TCCACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCCCGCTCGTT
* ** **
21248255 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC-AAGATCAGACTGGATAGAGGGTT-C
649 TCGTCGGTTGGCTTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGC
* * *
21248318 TAGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGTCCTGCGCATCCCGCCCC
713 -GGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* *
21248383 TCAGGCCGGCTGAGCGCCCACACGCAT-GTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
777 TCTGGCCGACTGAGCGCCCACACGC-TCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * * * *
21248447 CAGTCTAAGTATACTGAGTTCTTTCCCAATCTATGATCAGATCGGATCGAGGGTTACGA
841 CAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTACGA
* *
21248506 CAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCA
1 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCA
21248553 TCGAAGCATC
Statistics
Matches: 2399, Mismatches: 305, Indels: 71
0.86 0.11 0.03
Matches are distributed among these distances:
890 1 0.00
891 265 0.11
892 204 0.09
893 137 0.06
894 169 0.07
895 8 0.00
897 8 0.00
898 161 0.07
899 147 0.06
900 267 0.11
901 616 0.26
902 252 0.11
903 34 0.01
904 128 0.05
905 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGG
AGCATCGCCGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGC
GCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACC
TCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAA
AGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
TGATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
CTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
CGAGTCATCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCCCGCTCGTTTC
GTCGGTTGGCTTAGGCATACAGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGC
AGCAAGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
GCCGACTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
TAAGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGGACCGAGGGTTACGA
Found at i:21250905 original size:727 final size:718
Alignment explanation
Indices: 21249612--21250970 Score: 1936
Period size: 727 Copynumber: 1.9 Consensus size: 718
21249602 ACCATCACCG
* * *
21249612 GAGAACCTGATCGGTGGCATTGGGGTTTCGACGATCAGGGGGGCCAAGGGGGTGTTCGCAAATGA
1 GAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCAGGGGGGCCAAGGGGGTGTGCGCAAATGA
** * * *
21249677 TGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACTTCGAGAAC
66 TGTGCGATGGCTGCCAGTACTTGGCCCTAATATTGGTCACCTATCCCTCATCAAACCTCGAGAAC
* * *
21249742 ACACACCCTCTTAAAGAGCATTTGAGATTTTGCAAGTTTGTTGCTAGTAGCCATTAAAGTGTCTG
131 ACACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTG
* * **
21249807 AAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTTTTTTTT
196 AAAAGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAATTTTT
* ** * * *
21249872 TTTTGCATGCCAACAAAAATACATCAATCACGTCTAATAAGTTTGGGGCCAAAACTCCTCCCAAA
261 TTTTGCATGCCAACAAAAATACAACAATCACACCTAACAAGTTTGGGGCAAAAACCCCTCCCAAA
**** *** * *
21249937 AAAATTTTAAAAAATGTTGAACCGCAAAAAGTTTTCGAAATCGTGAAAAATAGAAAATGAGTCGT
326 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGT
*
21250002 CTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATG
391 CTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACAATTGTATGAATTTACAAGACATAAAAATG
21250067 GCATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTAACGATCCACGGCTT
456 GCATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTAACGATCCACGGCTT
* * * *
21250132 GCGCATCCCATCTCTTTGGCCAACGTAGTGCCCACCCACCCGCCCGCCCGCTCGGCCGCTCGTTT
521 GCGCATCCCATCTCTCTGGCCAACATAGTGCCCACCCACCCGCCCG--C-CT-----ACTCATTT
* * *
21250197 CGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACG
578 CGTCAGTTGGCTTAGGCATACGAAATTCACTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACG
21250262 GTAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCG
643 GTAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCG
21250327 GAGCATCGCCA
708 GAGCATCGCCA
* * ** *
21250338 GAGAACCTGACCGGCGGCATTGGGG-TTCTGGCGATC-GGGGGGGCTGGGGGCGTGTGCGCACAT
1 GAGAACCTGACCGGCGGCATTGGGGTTTC-GACGATCAGGGGGGCCAAGGGG-GTGTGCGCAAAT
* *
21250401 GATGTGCGATGGGTGCCAGTACTTGGCCCTAATATTGG-CAAGCTATCCCTCATCAAACCTCGAG
64 GATGTGCGATGGCTGCCAGTACTTGGCCCTAATATTGGTC-ACCTATCCCTCATCAAACCTCGAG
* * *
21250465 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-TCTGCCAGTAGCTATTAAAGTG
128 AACACACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGT-TGCCAGTAGCCATTAAAGTG
*
21250529 TCTGAAAAGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
192 TCTGAAAAGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCT-AA
* ** *
21250594 TTTTTTTTTGCATGCCAATAAAAATACAAGGATCACACCTACCAAGTTTGGGGCAAAAACCCCTT
256 TTTTTTTTTGCATGCCAACAAAAATACAACAATCACACCTAACAAGTTTGGGGCAAAAACCCC-T
*
21250659 CCC-AAAAAATTTTAAAAAATCCCAAACCGCAGAAAGTTTAAAAAATCATGAAAAATAGAAAACG
320 CCCAAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACG
* *
21250723 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATA
385 AGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACAATTGTATGAATTTACAAGACATA
* * *
21250788 AAAATGGCATTGGCACACAAAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCGATCCA
450 AAAATGGCATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTAACGATCCA
* * * * * * *
21250853 CGGCTTGCGGATCCCGTCTCTCTGGCCGACATAGTGCTCGCCCGCTCGCCCGCCTACTCATTTCG
515 CGGCTTGCGCATCCCATCTCTCTGGCCAACATAGTGCCCACCCACCCGCCCGCCTACTCATTTCG
* * *
21250918 TCGGTTGGCTTAGGCATACGAAATTCACTCCCAGTCTAAGATCGGACCGGACC
580 TCAGTTGGCTTAGGCATACGAAATTCACTCCCAGTCTAAGATCAGACCAGACC
21250971 AAGGATTGTG
Statistics
Matches: 558, Mismatches: 69, Indels: 19
0.86 0.11 0.03
Matches are distributed among these distances:
719 55 0.10
724 2 0.00
725 17 0.03
726 209 0.37
727 271 0.49
728 4 0.01
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (718 bp):
GAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCAGGGGGGCCAAGGGGGTGTGCGCAAATGA
TGTGCGATGGCTGCCAGTACTTGGCCCTAATATTGGTCACCTATCCCTCATCAAACCTCGAGAAC
ACACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGTTGCCAGTAGCCATTAAAGTGTCTG
AAAAGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTAATTTTT
TTTTGCATGCCAACAAAAATACAACAATCACACCTAACAAGTTTGGGGCAAAAACCCCTCCCAAA
AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACAATTGTATGAATTTACAAGACATAAAAATG
GCATTGGCACACAAAAATATGAAGATGTACCTAAACCCACCTACCACCCTAACGATCCACGGCTT
GCGCATCCCATCTCTCTGGCCAACATAGTGCCCACCCACCCGCCCGCCTACTCATTTCGTCAGTT
GGCTTAGGCATACGAAATTCACTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCACA
TGCTGGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTTGGGGCACCATCGCCGGAGCATCG
CCA
Found at i:21252491 original size:718 final size:711
Alignment explanation
Indices: 21251119--21253315 Score: 3155
Period size: 720 Copynumber: 3.1 Consensus size: 711
21251109 GTCTAAGCAA
** * * * *
21251119 ACGGAGTTCATTCCTTGTCTAAGATCAGACCGGACCGAGCGTTGCGACAGCACATGCTGGGTTCC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* * * *
21251184 GACATGTGCTGGTGC-CATATTTTTCTTCCCCGGGGCACCATCATCGGAGCATCGTCGGAGAACC
65 GGCATGTGCTGGTGCAC-TATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * * ** * *
21251248 TAACCGACGGCATTAGGGTTTCGGTGATCGGGGGGGCCGGGGG-GTGCACACATGATGTACGATG
129 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATG
* * * *
21251312 GGTGTCGATACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCACA-CCC
194 GGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
21251376 CTTAAAGAGCATTTGAGATTTTAAAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
259 CTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
21251441 CACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTGTTTTATGCA
324 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGT-TTTTGTGCA
* * *
21251505 TGCTGACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
388 TGC-CAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAATTT
* * *
21251570 TAAAAAAT-CTCGAACCGTAAAAAGTTTCAAATATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
451 TAAAAAATCCT-GAA-CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCC
*
21251634 ATGAAACTTCACGTGAAGGCTTAGGTGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
514 ATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
21251699 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
579 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
21251764 CCCATCTCTCTAGTCGGCGTAGTGCCCGCCCGTCGGCCCGCCCGCTCGTTTCGTCGGTTGGCTTG
644 CCCATCTCTCTGGCCGGCGTAGTGCCCGCCC-TC-GCCCACCCGCTCGTTTCGTCGGTTGGCTTG
21251829 GGCAT
707 GGCAT
* * *
21251834 ACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAGCACATGTTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGA-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
** *
21251899 GGCATGTGCTGGTGTCACT-TTTTTCTTCGTCGGGGAACCATCGTCGGAGCATCGCCGGAGAACC
65 GGCATGTGCTGGTG-CACTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACC
* * *
21251963 TGACCGGCGGCATTGGGGTTCCGACGGTCGGGGGGGCCGGGGGTGTGCGCGCACAGGATGTGCGA
129 TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGT--GCGCACATGATGTGCGA
*
21252028 TGGGTGTTGGTACTTGGCCCTTAGATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
192 TGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* * * *
21252093 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAATAGTCATTAAAGTGTTTGAAATGGG
257 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
21252158 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGC
322 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGC
* *
21252223 ATGCCAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAACAATTT
387 ATGCCAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA-AATTT
* *
21252288 TAAAAAATCCTGAACGGCAAAAAGCTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCA
451 TAAAAAATCCTGAAC-GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
*
21252353 TGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGG
515 TGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
21252418 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATC
580 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
21252483 CCATCTCTCTGGCCGGCGTAAT----G-CC-CGCCCACCCGCTCGTTTTGTCGGTTGGCTTGGGC
645 CCATCTCTCTGGCCGGCGTAGTGCCCGCCCTCGCCCACCCGCTCGTTTCGTCGGTTGGCTTGGGC
*
21252542 GT
710 AT
* **
21252544 GCGGAGTTCATTCCCAGTCTAAGATCAGACTGGAGTGAGGGTTGCGGCAGCACATGCTGGGCTCG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG
* *
21252609 GGCATGTGCTGCTGC-CGTATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGACGCATC
65 GGCATGTGCTGGTGCAC-TATTTTTCTTCACCGGGGCACCATCGTCGGAGCAT------CG----
* * * * *
21252673 ACCGGAGAACCTGACCGATGGCATTGGGGTTCCGACGATCGGGAGAGCTAGGGGGTGTGCGAACA
119 -CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CGGGGGTGTGCGCACA
* * *
21252738 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTAACCCTCATCAAACCTCGAG
182 TGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
* * *
21252803 AACTGACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAGTGT
247 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGT
21252868 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTCA-CTGAA
312 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAA
21252932 TGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
376 TGTTTTTGTGCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
* * * *
21252997 CCGAAAAATTTTAAAAAATCTTGAATCACAAAAAGTTTCAAAAATCATGGAAAATAGAAAATGAG
440 CCGAAAAATTTTAAAAAATCCTGAA-CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAG
* *
21253062 TTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
504 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAA
21253127 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
569 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * *
21253192 GCTTGCGCTTCCCGTCTCTCTGGCCGACGTAGCGCCCGCCCTCCCGCCCTA-TCGCTCGTTTCGT
634 GCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCT--CGCCC-ACCCGCTCGTTTCGT
*
21253256 CGGTTGGCTTAGGCAT
696 CGGTTGGCTTGGGCAT
* * *
21253272 ACGGAGTTCATTCCCAGTCTAAGATTAGACTGAATCGAGGGTTG
1 ACGGAGTTCATTCCCAGTCTAAGATCAGAC-GGACCGAGGGTTG
21253316 TGGTAGCAGG
Statistics
Matches: 1331, Mismatches: 114, Indels: 61
0.88 0.08 0.04
Matches are distributed among these distances:
708 1 0.00
709 3 0.00
710 131 0.10
711 1 0.00
713 2 0.00
714 1 0.00
715 144 0.11
716 6 0.00
717 5 0.00
718 324 0.24
719 125 0.09
720 413 0.31
721 94 0.07
722 8 0.01
724 1 0.00
725 2 0.00
728 69 0.05
729 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (711 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGACGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGG
GCATGTGCTGGTGCACTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTG
ACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGTGTGCGCACATGATGTGCGATGGG
TGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
TAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCATGC
CAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTAAAA
AATCCTGAACGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCT
CTCTGGCCGGCGTAGTGCCCGCCCTCGCCCACCCGCTCGTTTCGTCGGTTGGCTTGGGCAT
Found at i:21253463 original size:26 final size:26
Alignment explanation
Indices: 21253427--21253477 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21253417 GTTAACTTAG
21253427 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21253453 GCATATGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
21253478 CGATCAGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21255066 original size:26 final size:25
Alignment explanation
Indices: 21255030--21255081 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
21255020 GTTGACTTAG
*
21255030 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGT-TAA
21255056 GCATACGGAGTTCATTCCCAGTTAA
1 GCATACGGAGTTCATTCCCAGTTAA
21255081 G
1 G
21255082 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.27, C:0.23, G:0.21, T:0.29
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCAGTTAA
Found at i:21256546 original size:879 final size:875
Alignment explanation
Indices: 21254134--21258651 Score: 5584
Period size: 879 Copynumber: 5.1 Consensus size: 875
21254124 AGTGCCCGCC
* * * * *
21254134 CGCCCGCGCGCTCG-TTCGTTGGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAG-AT--T
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
21254195 G-G---A---CCAGACCGAGGGTTGCGGCAGCACATGCAGGGCTCGGCCATGTGCTGGTGCCGCA
66 GAGTTCATTCCCAGACCCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
** * * * *
21254253 TTTTTCTTCACCGGGGCACCAT---C--A-C--CG--G-AGAACCTGACCGACGGCATTAGGGTT
131 TTTTTCTTCGTCGGGGCACAATCGCCTGAGCATCGCCGAAGAACCTGACCGGCGGTATTGGGGTT
* * * * **
21254307 CCAGCGATCGGGGGGCCGGGGGGTGTA--CGCACATGATGTGCCATGGGCGCTGGTACTTGGCCC
196 CCGGCGATCGGGGGGTCGGGGGG-GTATGCGCACAT-AGGTGCGATGGGTTCTGGTACTTGGCCC
* * *
21254370 TTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGA
259 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGA
* *
21254434 TTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
324 TTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
* *
21254499 ATAAAATCTTGTACACTACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
389 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* ** * *
21254564 ATCACGTCTACCAAGTTTGTGACCAAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGT
454 ATCAGGTCTACCAAGTTTG-GGGCAAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAAACGC
* * * * *
21254629 ACAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
517 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAGG
* * * * *
21254694 CTTAAGGGACCAGTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGA
582 CTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGA
* ** * * * *
21254759 TGTGCCTAAACCCACCAACCACCCTATCGATAGACAGCTTGCGCATCCTGTCTCTCTAGCCGACG
647 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * * * *
21254824 TTGTGCCCGCCCGCCCGCCCGCACGCTCATTTCGTCGGTTGGCCTAGGCATACGGAGTTCATTCC
712 TAGT----GCCCGCCCG-CC-TA--CTCGTTTCATCGGTTGGCTTAGGCATACGGAGTACATTCC
* ** ** * * * * * *
21254889 CAGTCTAAGATTGGACCGGACCAAGGGTTGCGGTAGCAGGATCAGCAGCACGTAGAGGGGGACCC
769 CAGTCTAATATCAGAATGGACCGAGGGTTGTGGCAACAGGATCGGCAGCACGCAGAGGGGGACCC
* * * *
21254954 GATCGATCCACGACTTGCGCATTCCGCCCCTCTGGCCGGTTGAG
834 G-CCGATCC-CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
21254998 CGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
21255063 GAGTTCATTCCCAGTTAAGATCGGACCAGACCCAGGGTTGCGGCAACACATGCTGGGCTCGGGCA
66 GAG----TT--CA--T----TC---CCAGACCCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
21255128 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACAATCGCCTGAGCATCGCCGGAA-AACCTGAC
116 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACAATCGCCTGAGCATCGCC-GAAGAACCTGAC
* *
21255192 CGGCGGTATTGGGGTTTCGGCGATCGGGGGGGTC-GGGGGGTATGTGCACATAGGTGCGATGGGT
180 CGGCGGTATTGGGGTTCCGGCGATC-GGGGGGTCGGGGGGGTATGCGCACATAGGTGCGATGGGT
*
21255256 TCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGGGAACTCACACCCCCTT
244 TCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
21255321 AAAGGGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
309 AAAGGGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACAC
21255386 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
374 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
21255451 AACAAAAATAAAAGGATCAGGTCTACCAAGTTTGGGCCAAAAAATCCTTCCGAAAAAATTCTAAC
439 AACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCAAAAACTCCTTCC-AAAAAATTTTAAA
*
21255516 AAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAA
503 AAATCCCGAAACGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAA
21255581 ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGTCATG
568 ACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGTCATG
21255646 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
633 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
21255711 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCTACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTA
698 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCTACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTA
* *
21255776 CATTCCCAGTCTAATATCAGAATGGACTGAGGGTTGTGGCAACAGGATCGGCAACACGCAGAGGG
763 CATTCCCAGTCTAATATCAGAATGGACCGAGGGTTGTGGCAACAGGATCGGCAGCACGCAGAGGG
* *
21255841 GGACCCCGCCAATCTCCGGCTTGCGCAACCCGCCCCTCTGGCCGGCTGAG
828 GGA-CCCGCCGATC-CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
*
21255891 CGCCCGCACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
21255956 GAGTTCATTCCCAGACCCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACA
66 GAGTTCATTCCCAGACCCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
21256021 TTTTTCTTCGTCGGGGCACAATCGCCTGAGCATCGCCGAAGAACCTGACCGGCGGTATTGGGGTT
131 TTTTTCTTCGTCGGGGCACAATCGCCTGAGCATCGCCGAAGAACCTGACCGGCGGTATTGGGGTT
*
21256086 CCGGCGATCGGGGGGTTCGGGGGGGTATGCGCACATAGGTGTC-ATGTGTTCTGGTACTTGGCCC
196 CCGGCGATCGGGGGG-TCGGGGGGGTATGCGCACATAGGTG-CGATGGGTTCTGGTACTTGGCCC
*
21256150 TTATATTGGACCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGA
259 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGA
21256215 TTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
324 TTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTC
* * *
21256280 ACAAAATCTTGTACACTTCGAG-TTTTAGGCTGAATTTTTTTGTGCACGCCAACAAAAATAAAAC
389 ACAAAATCTTGTACACTTCGAGTTTTTA-GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
21256344 GATCAGGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAAACGC
453 GATCAGGTCTACCAAGTTTGGGGCAAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAAACGC
* *
21256409 AAAAAGTTTCAAAAATCGCGAAAAATAGAAAATGAGTCATCTCGCCATGAAACTTCATGTGAAGG
517 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAGG
21256474 CTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGA
582 CTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGA
21256539 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
647 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
21256604 TAGTGCCCGCCCGCCTACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTACATTCCCAGTCTAA
712 TAGTGCCCGCCCGCCTACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTACATTCCCAGTCTAA
* *
21256669 TATCAGAATGGACCGAGGGTTGTGGCAATAGGATCGGCAGCACGCAGAGGGGGACCCCACCGATC
777 TATCAGAATGGACCGAGGGTTGTGGCAACAGGATCGGCAGCACGCAGAGGGGGA-CCCGCCGAT-
*
21256734 CCCGGCTTGCGCATCCCGCCCCTCTAGCCGGCTGAG
840 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
21256770 TGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
*
21256835 GAGTTCATTCCTAGTTAGGATTGGATTGGACCCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
66 GAGTTCATTCC------------CA---GACCCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * ** *
21256900 TGTGCTGGTGCCGTATTTTTCTTCATCGGGGCATAATCGCCTGCGCATCATCGGAGAACCTGACC
116 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACAATCGCCTGAGCATCGCCGAAGAACCTGACC
*
21256965 GGCGGTATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTATGCGCACATAGGTGCGATGGGTTC
181 GGCGGTATTGGGGTTCCGGCGATCGGGGGGTCGGGGGGGTATGCGCACATAGGTGCGATGGGTTC
21257030 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
246 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
21257095 AGGGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT-GGGACAC-T
311 AGGGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
* *
21257158 TTTTCAAATCGTCAC-AAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTATTGTGCATGCCA
376 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TTGTGCATGCCA
*
21257222 A-AAAAATACAAGGATCAGGTCTACCAAGTTTGGGGC-AAAACTCCTTCC--AAATTTTTCAAAA
440 ACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAAAAAATTTT-AAAA
*
21257283 AATCTC-AAACCGCCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAATGAGTCATCTTGCCATG
504 AATCCCGAAA-CG-CAAAAAGTTTCAAAAATCGTGAAAAATAG-AAAATGAGTCATCTTGCCAT-
* *
21257347 GAAAACCTTCATGTTAAGGCTTAAGCGGGACCATTG--T-AATTTAGAAGCCAGAAAAATGGCCA
565 G-AAA-CTTCATGTGAAGGCTTAA--GGGACCATTGTATGAATTTAGAAGCCATAAAAATGG-CA
*
21257409 TTGTCATGCAGAAATATGAAGCATGTGCCTAAACCCACCCTACCACCCTAT-AATCCACGGCCTT
625 TTGTCATGCAGAAATATGAAG-ATGTGCCTAAACCCA-CCTACCACCCTATCGATCCACGG-CTT
* ** *
21257473 GCGCATCCCGTCTCTCTGGCCGACGTAGCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
687 GCGCATCCCGTCTCTCTGGCCGGCGTAG-TGCCCGCCCGCCTACTCGTTTCATCGGTTGGCTTAG
21257538 GCATACGGAGTACATTCCCAGTCTAATATCAAGAATGGACCAGAGGGGTTTGTGGCAACAGGATC
751 GCATACGGAGTACATTCCCAGTCTAATATC-AGAATGGACC-GA-GGG-TTGTGGCAACAGGATC
* * *
21257603 -GCAGCACGCAAGGAGGGGGACCC-CAAGATCCCCGGCTTGGCGGCA-CCCGCCCCT-TTGCCGA
812 GGCAGCACGC-A-GAGGGGGACCCGC-CGAT-CCCGGCTT-GC-GCATCCCGCCCCTCTGGCCGG
21257664 CTGAG
871 CTGAG
* *
21257669 CGCCCGCACGGCTCGTTTCGTGGGTTGACTTAGG-ATACAGAGTTTCATTCCCAGTGCCAAAGC-
1 CGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAG-TTCATTCCCAGT--CTAAGCA
* * * *
21257732 TATGGAGTTCACTTCCAGTCTAAGGATCGAACCGAACCAAGGGCTGCGGTTAGCACAACGCTCGG
62 TACGGAGTTCA-TTCC---C-----A--G-A-C---CC-AGGGTTGCGG-CAGCAC-ATGCT-GG
* * * * * ** *
21257797 GC-CGAGGCATGTGCTGGTGCCACA-TTTTCTTCGTTGTGGG-ACGAT-GTCGGAGCATCGTTGG
107 GCTCG-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGGCACAATCGCCTGAGCATCGCCGA
* * ** * * ** * *
21257858 AGAAACCTGACTGAC-ACATT-GGG-T--GGGGTTTCCAGTGATC-GGGGGGTAGTGCGCACAT-
170 AG-AACCTGACCGGCGGTATTGGGGTTCCGGCG-ATCGGGGGGTCGGGGGGGTA-TGCGCACATA
* * *
21257916 GTTGTGCGATTGGGTGCTAGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGA
232 G--GTGCGA-TGGGTTCT-GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGA
* *
21257981 GAACTCACACCACCCTTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
293 GAACTCACACC-CCC--TTAAAGGGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAA
* * * *
21258046 GTGTCTGAAATGGGGATA-TTTTTTACAAATGGTCACAAAATCTTGTACACTTCGAGGTTTTAAC
355 GTGTCTAAAATGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC
* * * * * *
21258110 -G-ATTTTTTTTTGCACGCCAACAAAAATACAAGGATCACGTCTACCACGTTTGGTGCCAAAACT
419 TGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCAAAAACT
* *
21258173 CC--CCAAAAAATTTTAAAAAAT-CTGGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
484 CCTTCCAAAAAATTTTAAAAAATCCCGAAAC-GCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* *
21258235 ATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
548 ATGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCC
* * * * *
21258300 ATCAAAATTGCATTGGT-ACGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGA
613 ATAAAAATGGCATT-GTCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * * *
21258364 TCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCTTAATGCCCTCCCGCCCGCCCGCTCGCTCAT
677 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCG--C-CT-ACTCGT
* * * * * * ** **
21258429 TTCATCGGTTGGCTTAGGCAAATGGAGTTCATTCCTAGTCAAAGATCAGACCGGATTGAGGGTTG
734 TTCATCGGTTGGCTTAGGCATACGGAGTACATTCCCAGTCTAATATCAGAATGGACCGAGGGTTG
* * * * * * * * *
21258494 CGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCTCGGGTTACGCATCCCACCCC
799 TGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCG-CCGATCC-CGGCTTGCGCATCCCGCCCC
21258559 TCTGGCCGGCTGAG
862 TCTGGCCGGCTGAG
* ** * * *
21258573 CGCCCGCACGCTCATTTTATAGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
21258638 GAGTTCATTCCCAG
66 GAGTTCATTCCCAG
21258652 TCTAAGATCC
Statistics
Matches: 3251, Mismatches: 250, Indels: 279
0.86 0.07 0.07
Matches are distributed among these distances:
864 12 0.00
865 40 0.01
866 2 0.00
868 1 0.00
869 1 0.00
877 9 0.00
878 130 0.04
879 706 0.22
880 2 0.00
881 2 0.00
885 1 0.00
886 10 0.00
887 13 0.00
888 28 0.01
889 33 0.01
890 133 0.04
891 58 0.02
892 49 0.02
893 359 0.11
894 181 0.06
895 65 0.02
896 13 0.00
897 13 0.00
898 18 0.01
899 56 0.02
900 70 0.02
901 373 0.11
902 262 0.08
903 108 0.03
904 154 0.05
905 43 0.01
906 47 0.01
907 106 0.03
908 103 0.03
909 26 0.01
910 24 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAGACCCAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
TTTTTCTTCGTCGGGGCACAATCGCCTGAGCATCGCCGAAGAACCTGACCGGCGGTATTGGGGTT
CCGGCGATCGGGGGGTCGGGGGGGTATGCGCACATAGGTGCGATGGGTTCTGGTACTTGGCCCTT
ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGGGCATTTGAGATT
TTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAC
AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
CAGGTCTACCAAGTTTGGGGCAAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAAACGCAAAA
AGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTA
AGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGTCATGCAGAAATATGAAGATGTG
CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT
GCCCGCCCGCCTACTCGTTTCATCGGTTGGCTTAGGCATACGGAGTACATTCCCAGTCTAATATC
AGAATGGACCGAGGGTTGTGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGCCGATCCCGGC
TTGCGCATCCCGCCCCTCTGGCCGGCTGAG
Found at i:21264873 original size:26 final size:26
Alignment explanation
Indices: 21264844--21264895 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
21264834 TGGTCCGATT
21264844 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
21264870 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
21264896 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:21265794 original size:26 final size:26
Alignment explanation
Indices: 21265758--21265810 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21265748 CTGGTTTGAT
21265758 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21265784 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21265810 C
1 C
21265811 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21266682 original size:26 final size:26
Alignment explanation
Indices: 21266653--21266731 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
21266643 CCAGTCCGAT
21266653 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21266679 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
21266705 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21266731 C
1 C
21266732 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.28, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21266922 original size:8 final size:8
Alignment explanation
Indices: 21266909--21266933 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
21266899 AACCGACGAA
21266909 ACGAGCGG
1 ACGAGCGG
21266917 ACGAGCGG
1 ACGAGCGG
21266925 ACGAGCGG
1 ACGAGCGG
21266933 A
1 A
21266934 TGGGCGGCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.28, C:0.24, G:0.48, T:0.00
Consensus pattern (8 bp):
ACGAGCGG
Found at i:21267633 original size:26 final size:26
Alignment explanation
Indices: 21267597--21267649 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21267587 CTGATCCGAT
21267597 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21267623 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21267649 C
1 C
21267650 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21269544 original size:12 final size:12
Alignment explanation
Indices: 21269527--21269552 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
21269517 GACGAAATGA
21269527 ACGGGCGGGCGG
1 ACGGGCGGGCGG
21269539 ACGGGCGGGCGG
1 ACGGGCGGGCGG
21269551 AC
1 AC
21269553 AGTACGTCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.12, C:0.27, G:0.62, T:0.00
Consensus pattern (12 bp):
ACGGGCGGGCGG
Found at i:21270229 original size:26 final size:26
Alignment explanation
Indices: 21270200--21270252 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21270190 TGGATCCGAT
*
21270200 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
21270226 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
21270252 C
1 C
21270253 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:21271033 original size:366 final size:369
Alignment explanation
Indices: 21270378--21271050 Score: 1030
Period size: 366 Copynumber: 1.8 Consensus size: 369
21270368 CCTCGATCTG
** * *
21270378 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCACCCGACGAAATGAACGAGCGGGC
1 GTCTGATCTTAGACTGGGAATGAACTCCGTACACCTAAGCCAACCGACGAAA-GAACGAGCAGGC
* * * * * * *
21270443 GGGCGAGCGGATAGTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTCGTA
65 GGGCGAGCGGACACTACATCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGACAGCGTCGTA
*
21270508 GGTGAGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
130 GGTGAGTTTAGGCACATCTTCATATTTCTGATTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
21270573 ACAATGGTTCCTTAATCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACA
195 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACA
*
21270638 ATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGACCTTCTTGCGGATTTTTT
260 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGACCTTCTTGCGGATTTTTT
21270703 AAACTTTTTGCGGTTGCCGATCCTGCTGCCGTAATCCTTGATCCA
325 AAACTTTTTGCGGTTGCCGATCCTGCTGCCGTAATCCTTGATCCA
*
21270748 GTCTGATCTTAGACTGGGAATGAACTCTGTACACCTAAGCCAACCGACG-AA-AA-GAGCAGGCG
1 GTCTGATCTTAGACTGGGAATGAACTCCGTACACCTAAGCCAACCGACGAAAGAACGAGCAGGCG
* * *
21270810 GGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGACAGCGTGGTAG
66 GGCGAGCGGACACTACATCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGACAGCGTCGTAG
* *
21270875 GTGGGTTTAGGTACATCTTCATATTTCT-ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
131 GTGAGTTTAGGCACATCTTCATATTTCTGAT-TGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* ** **
21270939 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCATG
195 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACA
** *
21271004 ATTTTTGAAACTTTTTACGGTTGGGGATTTTTTAAAATTTTTTCGGA
260 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
21271051 AGGATTTTTG
Statistics
Matches: 272, Mismatches: 30, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
365 1 0.00
366 222 0.82
367 2 0.01
369 2 0.01
370 45 0.17
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (369 bp):
GTCTGATCTTAGACTGGGAATGAACTCCGTACACCTAAGCCAACCGACGAAAGAACGAGCAGGCG
GGCGAGCGGACACTACATCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGACAGCGTCGTAG
GTGAGTTTAGGCACATCTTCATATTTCTGATTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACAA
TTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGACCTTCTTGCGGATTTTTTA
AACTTTTTGCGGTTGCCGATCCTGCTGCCGTAATCCTTGATCCA
Found at i:21272353 original size:26 final size:27
Alignment explanation
Indices: 21272317--21272370 Score: 92
Period size: 26 Copynumber: 2.0 Consensus size: 27
21272307 CCGATTCGAT
21272317 CTTAGACTGGGAATGAAA-TCCATATG
1 CTTAGACTGGGAATGAAACTCCATATG
*
21272343 CTTAGACTGGGAATGAAACTCCGTATG
1 CTTAGACTGGGAATGAAACTCCATATG
21272370 C
1 C
21272371 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
26 18 0.69
27 8 0.31
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGAATGAAACTCCATATG
Found at i:21273226 original size:26 final size:26
Alignment explanation
Indices: 21273187--21273247 Score: 81
Period size: 26 Copynumber: 2.4 Consensus size: 26
21273177 CCGTTGGTCC
21273187 AATCCG-AT-CTTAGACTGGGAATGA
1 AATCCGTATGCTTAGACTGGGAATGA
*
21273211 AATCCGTATGCTTAGAGTGGGAATGA
1 AATCCGTATGCTTAGACTGGGAATGA
* *
21273237 ACTTCGTATGC
1 AATCCGTATGC
21273248 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 6 0.19
25 2 0.06
26 24 0.75
ACGTcount: A:0.30, C:0.16, G:0.26, T:0.28
Consensus pattern (26 bp):
AATCCGTATGCTTAGACTGGGAATGA
Found at i:21273853 original size:882 final size:872
Alignment explanation
Indices: 21270752--21274056 Score: 4208
Period size: 882 Copynumber: 3.8 Consensus size: 872
21270742 GATCCAGTCT
* ** * * * *
21270752 GATCTTAGACTGGGAATGAACTCTGTACACCTAAGCCAACCGACGAAAAGAGCAGGCGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC-GGAGGGC
* * * * *
21270817 GGGCACTACATCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGACAGCGTGGTAGGTGGGTT
65 GGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
21270882 TAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * **
21270947 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCATGATTTTTGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTCAA
*** * * *
21271012 AACTTTTTACGGTTGGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGAAG
260 AACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCTAAACTTGGTAG
** * *
21271077 TTGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAG
*
21271142 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCGGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
21271207 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
21271272 AATATAAGCGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCGCCCGGCACCCTCGA
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGCCACCC-CGA
* * * * * * * *
21271337 TCG-TCGAAAATCC-AATGCCGCCGGTCAGGTTCTTCGACAATGCTCCGGCGATGGTGCCCCTAT
583 TCGCT-G-GAACCCTAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * * ** * * *
21271400 GAAGAAAAATGAGGCACCAGCACATGCCCGAGC-TTAG--CATGTGCTGCTGCA-ACCCTCGG--
646 GAAGAAAAATGTGGCACCAGCACATGCCCAACCGTTGGTCCATCCGAT-CT-TAGA--CTGGGAA
**** * * *
21271459 TCCGGTCCAAT-CTTAGACTGGGAATGAACTCCGTATGCCCAACTCAACCCACGAAACGAGCGTG
707 TGAAATCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * ** *
21271523 CGAGCGCTCAACCGGTCAGAGGGGCGGGATATGCAAGCTGGGGATCGGCCGGGTCCCCCTCTGTG
772 CGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTG
* * * **
21271588 TGCTGCGATCCTGCTGCCACAACCTTCGATCCAGTCC
837 TGCTGCGATCCTGCTGCCGCAACCCTCGTTTGA-TCC
*
21271625 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCGGGC-GAGCGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGAG-GGC
** * * *
21271689 GGGCACTACGTCGGCCAGAGAGACGGGATACCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGT
65 GGGCACTACACCGACCAGAGAGACGGGAT-GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
21271754 TTAGGCACATCTTCATATTTCTGCGTGCCTATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
**
21271819 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACAC-ACTCGTTTTCTATTTTTCATGATTTTTG
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTCA
* * * * *
21271883 AAACTTTTTACGGTTTAAGATTTTTTTAAATTTTTTTGGAAGG-TGTTTTGGCCCTTAA-TTGGT
259 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAT-TTTTGGCCCTAAACTTGGT
* *
21271946 AGACGTGATCCTTATATTTTTGTTGGCA--CGC----ACA---A---AAAAACTCGAAGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACA
* * *
21271999 AGATTTTTTGACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
21272064 CCTGTAAAATCTCAAACGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** *
21272129 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCGCTGGCCCCCCCG
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGCCACCCCG
* * *
21272194 ATCGTTGGAACCCCAATGCCGTCGGTCAAGTTCT-C--CGA---T-----GATGGTGCCCCGACG
582 ATCGCTGGAACCCTAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
*
21272248 AAGAAAAATGTGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGATT
647 AAGAAAAATGTGGCACCAGCACA----T--GCCCA--A-------CCGT-----T-GGTCC-ATC
21272313 CGATCTTAGACTGGGAATGAAATCCATATGCTTAGACTGGGAATGAAACTCCGTATGCCTAAGTC
690 CGATCTTAGACTGGGAATGAAATCC-TATGCTTAGACTGGGAATG-AACTCCGTATGCCTAAGTC
* * *
21272378 AACCCACGAAACGAGCGTGCAGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATC
753 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC
* * * * * *
21272443 GGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAATCCTCGATCTGGTCC
818 GGCCGGGTCCCCCTCTGTGTGCTG-CGATCCTGCTGCCGCAACCCTCG-TTTGATCC
* * * * *
21272500 GATCTTAGATTGGCAATTAACTCCGTATGCCTAAGCCAATCG-TCGAAACGTGCGGGCGGACGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT-GAAACGAGCGGGCGGA-GGG
* *
21272564 CGGGCACTACGCCGACCAGAGAGACTGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
64 CGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** * *
21272629 TTAGGCACATCTTCAAATTTCTGTGGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGA
129 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
21272694 TCCCTGAAGCCTTCATGTGAAGTTTCATGGCAACATGACCCGTTTTCTATTTTTCATGATTTTCA
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTCA
* *
21272759 AAACTTTTT-CGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCGCTAAACTTGGTA
259 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCTAAACTTGGTA
* * *
21272823 GATGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAACAATTCAGATAAAAACTCAAAGTGTACA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAC-ATTCAGCTAAAAACTCGAAGTGTACA
*
21272887 AGATTTTGTGACCACTTGAAAAAAGTGTCCCCATTTTC-GACACTTTAATGGCTA-TCGGCAGCA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACT-GGCAGCA
* *
21272950 AACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTATGAGTTCTTGAGGTTTGATGAGGGATAGGG
451 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
21273015 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACAGCCCCCGACCACCC
516 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-CCACCC
* *
21273080 CGATCGCTGGAACCCTAATACCGTCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
580 CGATCGCTGGAACCCTAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
*
21273145 CGAAGAGAAATGTGGCACCAGCACATGCCCAACCGTTGGTCCAATCCGATCTTAGACTGGGAATG
645 CGAAGAAAAATGTGGCACCAGCACATGCCCAACCGTTGGTCC-ATCCGATCTTAGACTGGGAATG
* * *
21273210 AAATCCGTATGCTTAGAGTGGGAATGAACTTCGTATGCCTAAGTCAACCCACAAAACGAGCGTGC
709 AAATCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
** * * * **
21273275 GGGCGCTCAGCTAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGCCAGATCCCCCTCCATGT
773 GGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGT
*
21273340 GCTGCCGATCCTGCTGCCGCTACCCTCAGTTTGATCC
838 GCTG-CGATCCTGCTGCCGCAACCCTC-GTTTGATCC
* *
21273377 AATCTTAGACAGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCAGGA
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA----GCGGGC-GGA
* * *
21273442 GGGCGGGCACTACACCGACCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGATACGTG
61 GGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
21273507 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
126 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
21273572 TGGTCCCTTAAGCCTTCATGTGAAATTTCATGGCAAGACGACTCATTTTCTATTTTTCAAGATTT
191 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTT
* *
21273637 TCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCGAAACTTG
256 TCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCTAAACTTG
* *
21273702 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAAATCGAAGTGTA
321 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTA
*
21273767 CAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
386 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
21273832 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGG
451 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
21273897 GGCCAATATAAGGGCCAAGTACCGGCACCCATTGCACATCATGTGCGCACACCCCCCGGCACCCC
516 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCA-CCC
** * * ** * *
21273962 CGATCGCCAGAACCCTAATGCCGCCGGTCAGGTTATCCGGTGATGCTCCGACGATGGTGCCTCAA
580 CGATCGCTGGAACCCTAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
*
21274027 TGAAGAAAAATGTGGCACCAGCACATGCCC
645 CGAAGAAAAATGTGGCACCAGCACATGCCC
21274057 GAGCCTAGCA
Statistics
Matches: 2130, Mismatches: 220, Indels: 155
0.85 0.09 0.06
Matches are distributed among these distances:
847 35 0.02
851 1 0.00
852 1 0.00
853 4 0.00
855 3 0.00
857 5 0.00
858 25 0.01
859 197 0.09
862 2 0.00
863 1 0.00
865 2 0.00
868 1 0.00
869 7 0.00
870 1 0.00
871 40 0.02
872 113 0.05
873 191 0.09
874 95 0.04
875 239 0.11
876 96 0.05
877 162 0.08
878 54 0.03
879 1 0.00
881 203 0.10
882 364 0.17
883 6 0.00
884 4 0.00
885 1 0.00
887 3 0.00
888 221 0.10
889 4 0.00
891 4 0.00
893 5 0.00
894 1 0.00
895 1 0.00
899 37 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (872 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGAGGGCG
GGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCATGATTTTCAAA
ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCTAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCACCCCGATCG
CTGGAACCCTAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
AAAATGTGGCACCAGCACATGCCCAACCGTTGGTCCATCCGATCTTAGACTGGGAATGAAATCCT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCGAT
CCTGCTGCCGCAACCCTCGTTTGATCC
Found at i:21274845 original size:26 final size:26
Alignment explanation
Indices: 21274807--21274859 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21274797 TCAGTTCGAT
* *
21274807 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
*
21274833 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
21274859 C
1 C
21274860 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:21275453 original size:6 final size:6
Alignment explanation
Indices: 21275440--21275538 Score: 75
Period size: 6 Copynumber: 17.0 Consensus size: 6
21275430 TATATATATA
*
21275440 TATTTT T-TTATT T-TTTT TATTTT TATTTT CA-TTT TA-TTT TATTTT
1 TATTTT TATT-TT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
* * * * *
21275485 TA-TTT TATTTT TATTAT TATTTAT ATATATA TATTTT T-CTTT TCTTTT
1 TATTTT TATTTT TATTTT TATTT-T -TATTTT TATTTT TATTTT TATTTT
21275533 TATTTT
1 TATTTT
21275539 AGCTATTTAC
Statistics
Matches: 75, Mismatches: 11, Indels: 14
0.75 0.11 0.14
Matches are distributed among these distances:
5 23 0.31
6 47 0.63
7 1 0.01
8 4 0.05
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (6 bp):
TATTTT
Found at i:21275462 original size:17 final size:17
Alignment explanation
Indices: 21275440--21275538 Score: 62
Period size: 17 Copynumber: 5.8 Consensus size: 17
21275430 TATATATATA
21275440 TATTTTTTTATTTTTTT
1 TATTTTTTTATTTTTTT
21275457 TA--TTTTTATTTTCATTT
1 TATTTTTTTATTTT--TTT
* *
21275474 TATTTTATT-TTTATTT
1 TATTTTTTTATTTTTTT
* *
21275490 TATTTTTATTATTATTTA
1 TATTTTT-TTATTTTTTT
* * *
21275508 TATATATATATTTTTCTT
1 TATTTTTTTATTTTT-TT
*
21275526 T-TCTTTTTATTTT
1 TATTTTTTTATTTT
21275539 AGCTATTTAC
Statistics
Matches: 61, Mismatches: 14, Indels: 14
0.69 0.16 0.16
Matches are distributed among these distances:
15 10 0.16
16 9 0.15
17 24 0.39
18 14 0.23
19 4 0.07
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.78
Consensus pattern (17 bp):
TATTTTTTTATTTTTTT
Found at i:21275468 original size:11 final size:11
Alignment explanation
Indices: 21275445--21275539 Score: 97
Period size: 11 Copynumber: 8.5 Consensus size: 11
21275435 ATATATATTT
21275445 TTTTA-TTTT-
1 TTTTATTTTTA
21275454 TTTTATTTTTA
1 TTTTATTTTTA
21275465 TTTTCA-TTTTA
1 TTTT-ATTTTTA
21275476 TTTTATTTTTA
1 TTTTATTTTTA
21275487 TTTTATTTTTA
1 TTTTATTTTTA
21275498 TTATTATTTATATA
1 TT-TTATTT-T-TA
* *
21275512 TATATATTTTTC
1 T-TTTATTTTTA
*
21275524 TTTTCTTTTTA
1 TTTTATTTTTA
21275535 TTTTA
1 TTTTA
21275540 GCTATTTACT
Statistics
Matches: 72, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
9 5 0.07
10 5 0.07
11 42 0.58
12 9 0.12
13 2 0.03
14 8 0.11
15 1 0.01
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:21275507 original size:16 final size:15
Alignment explanation
Indices: 21275444--21275508 Score: 69
Period size: 16 Copynumber: 4.1 Consensus size: 15
21275434 TATATATATT
*
21275444 TTTTTATTTTTTTTA
1 TTTTTATTTTATTTA
21275459 TTTTTATTTTCATTT-
1 TTTTTATTTT-ATTTA
21275474 TATTTTATTTTTATTTTA
1 T-TTTTA-TTTTA-TTTA
21275492 TTTTTATTATTATTTA
1 TTTTTATT-TTATTTA
21275508 T
1 T
21275509 ATATATATAT
Statistics
Matches: 43, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
15 11 0.26
16 16 0.37
17 15 0.35
18 1 0.02
ACGTcount: A:0.18, C:0.02, G:0.00, T:0.80
Consensus pattern (15 bp):
TTTTTATTTTATTTA
Found at i:21276167 original size:11 final size:11
Alignment explanation
Indices: 21276153--21276183 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
21276143 CCAGCCAACT
*
21276153 TCCGGTGAGCC
1 TCCGGTGAACC
21276164 TCCGGTGAACC
1 TCCGGTGAACC
21276175 TCCGGTGAA
1 TCCGGTGAA
21276184 ATTTTCCAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.19
Consensus pattern (11 bp):
TCCGGTGAACC
Found at i:21276682 original size:27 final size:27
Alignment explanation
Indices: 21276630--21276697 Score: 75
Period size: 27 Copynumber: 2.5 Consensus size: 27
21276620 TTTTATCTTA
*
21276630 ATTTATTTTATTTTTGTTTTACTTTTTT
1 ATTT-TTTTATTTTTATTTTACTTTTTT
*
21276658 ATTTTTTTATTTTTA-TTTATTTTTTTT
1 ATTTTTTTATTTTTATTTTA-CTTTTTT
* *
21276685 ATTATTCTATTTT
1 ATTTTTTTATTTT
21276698 CTCTAAATAA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
26 4 0.11
27 27 0.77
28 4 0.11
ACGTcount: A:0.16, C:0.03, G:0.01, T:0.79
Consensus pattern (27 bp):
ATTTTTTTATTTTTATTTTACTTTTTT
Found at i:21276689 original size:16 final size:15
Alignment explanation
Indices: 21276652--21276697 Score: 58
Period size: 14 Copynumber: 3.0 Consensus size: 15
21276642 TTTGTTTTAC
21276652 TTTTTTATTT-TTTT
1 TTTTTTATTTATTTT
*
21276666 ATTTTTATTTATTTT
1 TTTTTTATTTATTTT
21276681 TTTTATTATTCTATTTT
1 TTTT-TTATT-TATTTT
21276698 CTCTAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
14 9 0.33
15 7 0.26
16 5 0.19
17 6 0.22
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTTTATTTATTTT
Found at i:21276909 original size:57 final size:58
Alignment explanation
Indices: 21276822--21277209 Score: 511
Period size: 59 Copynumber: 6.7 Consensus size: 58
21276812 TGAAATCAAG
21276822 AAAAAATATTTTTGA-GAAAAGTTGAAAGTATCAATTTGT-CTTAAAAAT-AAATTTCC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTT-TCCTTAAAAATAAAATTTCC
* *
21276878 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCA
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
** * *
21276936 AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
1 AAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCC
* ** * *
21276996 AAAAAATATTTTT-AGGGAAAAGATGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTCA
1 AAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCC
* *
21277055 AAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTAC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
* *
21277112 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
* * *
21277169 AAAAAAAATATTTTGGGGAAAAGTTGAAAGTA-CCATTTTCC
1 AAAAAATAT-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
21277210 CCACACAAGA
Statistics
Matches: 299, Mismatches: 25, Indels: 15
0.88 0.07 0.04
Matches are distributed among these distances:
56 16 0.05
57 106 0.35
58 36 0.12
59 127 0.42
60 14 0.05
ACGTcount: A:0.45, C:0.07, G:0.13, T:0.35
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCC
Found at i:21278071 original size:23 final size:23
Alignment explanation
Indices: 21278036--21278099 Score: 110
Period size: 23 Copynumber: 2.7 Consensus size: 23
21278026 TCTTTTGTCA
21278036 TGTTAGGATTTCTTTTTGAGTGAT
1 TGTT-GGATTTCTTTTTGAGTGAT
*
21278060 TGTTGGATTTCTTTTCGAGTGAT
1 TGTTGGATTTCTTTTTGAGTGAT
21278083 TGTTGGATTTCTTTTTG
1 TGTTGGATTTCTTTTTG
21278100 CAATGTGACT
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 34 0.89
24 4 0.11
ACGTcount: A:0.12, C:0.06, G:0.25, T:0.56
Consensus pattern (23 bp):
TGTTGGATTTCTTTTTGAGTGAT
Found at i:21278972 original size:21 final size:21
Alignment explanation
Indices: 21278938--21279016 Score: 79
Period size: 21 Copynumber: 3.6 Consensus size: 21
21278928 AACAATGGAT
21278938 GAAAATGAGAAAAGAGAAAAAA
1 GAAAATGA-AAAAGAGAAAAAA
** *
21278960 GATGATGAAAAAGAAAAAAAA
1 GAAAATGAAAAAGAGAAAAAA
21278981 GAAAATGAAAGAATGAGAAAATGAA
1 GAAAATGAAA-AA-GAGAAAA--AA
21279006 -AAAATGAAAAA
1 GAAAATGAAAAA
21279017 AGGAGATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 7
0.78 0.10 0.12
Matches are distributed among these distances:
21 20 0.43
22 8 0.17
23 8 0.17
24 9 0.19
25 2 0.04
ACGTcount: A:0.71, C:0.00, G:0.20, T:0.09
Consensus pattern (21 bp):
GAAAATGAAAAAGAGAAAAAA
Found at i:21278974 original size:19 final size:19
Alignment explanation
Indices: 21278942--21278978 Score: 58
Period size: 19 Copynumber: 1.9 Consensus size: 19
21278932 ATGGATGAAA
21278942 ATGAGAAAAGAGAAAAAAG
1 ATGAGAAAAGAGAAAAAAG
21278961 ATGATGAAAA-AGAAAAAA
1 ATGA-GAAAAGAGAAAAAA
21278979 AAGAAAATGA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 12 0.71
20 5 0.29
ACGTcount: A:0.70, C:0.00, G:0.22, T:0.08
Consensus pattern (19 bp):
ATGAGAAAAGAGAAAAAAG
Found at i:21278985 original size:8 final size:8
Alignment explanation
Indices: 21278982--21279017 Score: 54
Period size: 8 Copynumber: 4.5 Consensus size: 8
21278972 GAAAAAAAAG
21278982 AAAATGAA
1 AAAATGAA
* *
21278990 AGAATGAG
1 AAAATGAA
21278998 AAAATGAA
1 AAAATGAA
21279006 AAAATGAA
1 AAAATGAA
21279014 AAAA
1 AAAA
21279018 GGAGATTCAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.72, C:0.00, G:0.17, T:0.11
Consensus pattern (8 bp):
AAAATGAA
Found at i:21279001 original size:16 final size:16
Alignment explanation
Indices: 21278939--21279016 Score: 70
Period size: 16 Copynumber: 4.8 Consensus size: 16
21278929 ACAATGGATG
*
21278939 AAAATGAGAAAAGAGAAA
1 AAAATGAGAAAA-TG-AA
*
21278957 AAAGATGATGAAAAAGAA
1 AAA-ATGA-GAAAATGAA
*
21278975 AAAA-AAGAAAATGAA
1 AAAATGAGAAAATGAA
*
21278990 AGAATGAGAAAATGAA
1 AAAATGAGAAAATGAA
21279006 AAAATGA-AAAA
1 AAAATGAGAAAA
21279017 AGGAGATTCA
Statistics
Matches: 52, Mismatches: 5, Indels: 9
0.79 0.08 0.14
Matches are distributed among these distances:
15 15 0.29
16 17 0.33
17 1 0.02
18 8 0.15
19 6 0.12
20 5 0.10
ACGTcount: A:0.72, C:0.00, G:0.19, T:0.09
Consensus pattern (16 bp):
AAAATGAGAAAATGAA
Found at i:21280374 original size:41 final size:42
Alignment explanation
Indices: 21280261--21280396 Score: 247
Period size: 42 Copynumber: 3.3 Consensus size: 42
21280251 ATGATTGTCA
21280261 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
21280303 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
21280345 ATGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
21280386 AGGAGCAATTT
1 AGGAGCAATTT
21280397 CTCTGTTTAG
Statistics
Matches: 91, Mismatches: 3, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
41 37 0.41
42 54 0.59
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (42 bp):
AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:21280405 original size:21 final size:21
Alignment explanation
Indices: 21280376--21280417 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
21280366 GTCGTGGTGC
21280376 CTCTATTTAGAGGAGCAATTT
1 CTCTATTTAGAGGAGCAATTT
*
21280397 CTCTGTTTAGAGGAGCAATTT
1 CTCTATTTAGAGGAGCAATTT
21280418 ACTTTCCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.38
Consensus pattern (21 bp):
CTCTATTTAGAGGAGCAATTT
Done.