Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 124 of 195
Found at i:21280437 original size:62 final size:62
Alignment explanation
Indices: 21280335--21280458 Score: 212
Period size: 62 Copynumber: 2.0 Consensus size: 62
21280325 GTCGTGGTGC
* **
21280335 CTCTGTTTAGATGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTT
1 CTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCAAGGTGCCTCTATTTAGAGGAGCAATTT
*
21280397 CTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCAAGGTGCCTCTGTTTAGAGGAGCAATTT
1 CTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCAAGGTGCCTCTATTTAGAGGAGCAATTT
21280459 ATTTTTCCAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
62 58 1.00
ACGTcount: A:0.25, C:0.18, G:0.22, T:0.35
Consensus pattern (62 bp):
CTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCAAGGTGCCTCTATTTAGAGGAGCAATTT
Found at i:21280454 original size:41 final size:42
Alignment explanation
Indices: 21280397--21280495 Score: 155
Period size: 42 Copynumber: 2.4 Consensus size: 42
21280387 GGAGCAATTT
21280397 CTCTGTTTAGAGGAGCAATTTA-CTTTCCAAAGTCAAGGTGC
1 CTCTGTTTAGAGGAGCAATTTATCTTTCCAAAGTCAAGGTGC
* **
21280438 CTCTGTTTAGAGGAGCAATTTATTTTTCCAAAGTCGTGGTGC
1 CTCTGTTTAGAGGAGCAATTTATCTTTCCAAAGTCAAGGTGC
*
21280480 CTCTATTTAGAGGAGC
1 CTCTGTTTAGAGGAGC
21280496 TTTAAAAAAA
Statistics
Matches: 53, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
41 22 0.42
42 31 0.58
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.34
Consensus pattern (42 bp):
CTCTGTTTAGAGGAGCAATTTATCTTTCCAAAGTCAAGGTGC
Found at i:21280473 original size:104 final size:104
Alignment explanation
Indices: 21280293--21280495 Score: 354
Period size: 104 Copynumber: 2.0 Consensus size: 104
21280283 GTCGTGGTGC
** *
21280293 CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGATGAGCAATTTAC
1 CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCAAGGTGCCTCTGTTTAGAGGAGCAATTTAC
21280358 TTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTT
66 TTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTT
21280397 CTCTGTTTAGAGGAGCAATTTAC-TTTCCAAAGTCAAGGTGCCTCTGTTTAGAGGAGCAATTTAT
1 CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCAAGGTGCCTCTGTTTAGAGGAGCAATTTA-
*
21280461 TTTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGC
65 CTTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGC
21280496 TTTAAAAAAA
Statistics
Matches: 94, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
103 37 0.39
104 57 0.61
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (104 bp):
CTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCAAGGTGCCTCTGTTTAGAGGAGCAATTTAC
TTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTT
Found at i:21280514 original size:10 final size:10
Alignment explanation
Indices: 21280499--21280526 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
21280489 GAGGAGCTTT
21280499 AAAAAAAAAC
1 AAAAAAAAAC
21280509 AAAAAAAAAC
1 AAAAAAAAAC
21280519 AAAAAAAA
1 AAAAAAAA
21280527 GGGTTGCCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAC
Found at i:21280652 original size:9 final size:9
Alignment explanation
Indices: 21280640--21280669 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
21280630 AAAAAGGGCA
21280640 AAAAAAAAT
1 AAAAAAAAT
21280649 -AAAAAAAT
1 AAAAAAAAT
21280657 AAAAAAAAT
1 AAAAAAAAT
21280666 AAAA
1 AAAA
21280670 TGTTTAAGTT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:21280830 original size:6 final size:6
Alignment explanation
Indices: 21280811--21280886 Score: 68
Period size: 6 Copynumber: 12.5 Consensus size: 6
21280801 TAAGTATATG
* *
21280811 TTTT-T TTTTA- TTTTAT TTTTAT TTTTATT TTATTAT TATTAT TATTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTA-T TT-TTAT TTTTAT TTTTAT
*
21280859 TTTATAT ATATT-T TTTTAT TTTTAT TTT
1 TTT-TAT -TTTTAT TTTTAT TTTTAT TTT
21280887 AGCTATTTAC
Statistics
Matches: 60, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
5 12 0.20
6 34 0.57
7 9 0.15
8 5 0.08
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:21280831 original size:11 final size:11
Alignment explanation
Indices: 21280811--21280887 Score: 66
Period size: 11 Copynumber: 6.5 Consensus size: 11
21280801 TAAGTATATG
21280811 TTTT-TTTTTA
1 TTTTATTTTTA
21280821 TTTTATTTTTA
1 TTTTATTTTTA
21280832 TTTTTATTTTATTA
1 -TTTTA-TTT-TTA
*
21280846 TTATTATTATTA
1 TT-TTATTTTTA
*
21280858 TTTTATATATATTT
1 TTTTAT-T-T-TTA
21280872 TTTTATTTTTA
1 TTTTATTTTTA
21280883 TTTTA
1 TTTTA
21280888 GCTATTTACT
Statistics
Matches: 55, Mismatches: 4, Indels: 15
0.74 0.05 0.20
Matches are distributed among these distances:
10 4 0.07
11 17 0.31
12 12 0.22
13 8 0.15
14 14 0.25
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:21280846 original size:20 final size:19
Alignment explanation
Indices: 21280815--21280887 Score: 80
Period size: 20 Copynumber: 3.8 Consensus size: 19
21280805 TATATGTTTT
21280815 TTTTTATTTTA-TTT-TTA
1 TTTTTATTTTATTTTATTA
21280832 TTTTTATTTTATTATTATTA
1 TTTTTATTTTATT-TTATTA
* *
21280852 TTATTATTTTATATATATT-
1 TTTTTATTTTAT-TTTATTA
21280871 TTTTTATTTTTATTTTA
1 TTTTTA-TTTTATTTTA
21280888 GCTATTTACT
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
17 11 0.23
18 1 0.02
19 10 0.21
20 24 0.51
21 1 0.02
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTATTTTATTTTATTA
Found at i:21281995 original size:10 final size:9
Alignment explanation
Indices: 21281976--21282030 Score: 58
Period size: 10 Copynumber: 5.9 Consensus size: 9
21281966 TTTTATCTTA
21281976 ATTTTATTTT
1 ATTTT-TTTT
21281986 ATTTTGTTTT
1 ATTTT-TTTT
* *
21281996 ACTTTCTTT
1 ATTTTTTTT
21282005 A-TTTTTTT
1 ATTTTTTTT
21282013 ATTTTTATTT
1 ATTTTT-TTT
21282023 ATTTTTTT
1 ATTTTTTT
21282031 ATTATTCTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
8 7 0.18
9 10 0.26
10 22 0.56
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.80
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:21282011 original size:26 final size:27
Alignment explanation
Indices: 21281978--21282043 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 27
21281968 TTATCTTAAT
21281978 TTTATTTTATTTTGT-TTTACTTTCTTTA
1 TTTATTTTATTTT-TATTTA-TTTCTTTA
*
21282006 TTT-TTTTATTTTTATTTATTTTTTTA
1 TTTATTTTATTTTTATTTATTTCTTTA
*
21282032 -TTATTCTATTTT
1 TTTATTTTATTTT
21282044 CTTTAAATAA
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
25 2 0.06
26 16 0.47
27 13 0.38
28 3 0.09
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.79
Consensus pattern (27 bp):
TTTATTTTATTTTTATTTATTTCTTTA
Found at i:21282193 original size:119 final size:117
Alignment explanation
Indices: 21282051--21282405 Score: 493
Period size: 117 Copynumber: 3.0 Consensus size: 117
21282041 TTTCTTTAAA
*
21282051 TAAAAATCAAAATTTCCAAAAAAACTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
1 TAAAAATCAAAATTT-CAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
21282116 TAAAAATAAGTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
65 TAAAAAT---TTTC-AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
***
21282173 TAAAAAT-AAAATTTC-AAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAA
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT--AA
* *
21282236 ATCAAAATTTTCAAAAAATATTTTT-AGGGAAAAGATGAAAGTATCAATTTTCCT
64 ATAAAAATTTTCAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
** * *
21282290 TGGAAATCAAAGTTTCAAAAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAA-
1 TAAAAATCAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAT
* *
21282354 AATAAATTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTACCAATTTTCC
66 AA-AAATTTTCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
21282406 CTACACAAGA
Statistics
Matches: 210, Mismatches: 16, Indels: 19
0.86 0.07 0.08
Matches are distributed among these distances:
116 2 0.01
117 92 0.44
118 11 0.05
119 81 0.39
120 1 0.00
121 16 0.08
122 7 0.03
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.34
Consensus pattern (117 bp):
TAAAAATCAAAATTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAT
AAAAATTTTCAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:21282275 original size:59 final size:60
Alignment explanation
Indices: 21282051--21282405 Score: 476
Period size: 58 Copynumber: 6.0 Consensus size: 60
21282041 TTTCTTTAAA
*
21282051 TAAAAATCAAAATTTCCAAAAAAACTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTTTCAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* *
21282112 TAAATAA-AAATAAGTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAA-AATCAA-AATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
***
21282173 TAAAAAT-AAAA-TTTCAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* *
21282231 TGAAAATCAAAATTTTC-AAAAAATATTTTT-AGGGAAAAGATGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTTTCAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCT
** * *
21282290 TGGAAATC-AAAGTTTCAAAAAAAATATTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAAATTTTC-AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
* *
21282350 TAAAAAT--AAATTTTC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTACCAATTTTCC
1 TAAAAATCAAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
21282406 CTACACAAGA
Statistics
Matches: 265, Mismatches: 20, Indels: 22
0.86 0.07 0.07
Matches are distributed among these distances:
57 38 0.14
58 58 0.22
59 56 0.21
60 52 0.20
61 47 0.18
62 14 0.05
ACGTcount: A:0.45, C:0.08, G:0.12, T:0.34
Consensus pattern (60 bp):
TAAAAATCAAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:21285553 original size:20 final size:18
Alignment explanation
Indices: 21285516--21285588 Score: 60
Period size: 19 Copynumber: 3.9 Consensus size: 18
21285506 ACAATGGATG
*
21285516 AAAAATGAGAAAAGAGAA
1 AAAAATGAGAAAAAAGAA
21285534 AAAAGATGATGAAAAAAGAA
1 AAAA-ATGA-GAAAAAAGAA
**
21285554 AAAAAAAAGAAAGAAATG-A
1 AAAAATGAGAAA-AAA-GAA
*
21285573 GAAAATGA-AAAAAAGA
1 AAAAATGAGAAAAAAGA
21285589 GATTCAAATT
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
16 1 0.02
17 3 0.07
18 11 0.25
19 15 0.34
20 14 0.32
ACGTcount: A:0.74, C:0.00, G:0.19, T:0.07
Consensus pattern (18 bp):
AAAAATGAGAAAAAAGAA
Found at i:21286870 original size:42 final size:41
Alignment explanation
Indices: 21286824--21287161 Score: 496
Period size: 41 Copynumber: 8.1 Consensus size: 41
21286814 ATGATTGTCA
*
21286824 AGGAGCAATTTATTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAG
21286866 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* ** * *
21286908 AGGAGCAATTTAATTTTTCAAAGTTATTGTGCTTCTGTTTAG
1 AGGAGCAATTT-ATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * *
21286950 AGGAGCAATTTACTTTCCTAAGTGGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* ** *
21286991 AGGAGCAATTTATTTTTCAAAGTTATGGTGCCTCTGCTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
21287032 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTTTGTTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
21287073 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
21287114 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTA-TTTTCCAAAGTCGTGGTGCCTCTGTTTAG
21287156 AGGAGC
1 AGGAGC
21287162 TTTAAAAAAA
Statistics
Matches: 264, Mismatches: 30, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
41 143 0.54
42 120 0.45
43 1 0.00
ACGTcount: A:0.23, C:0.16, G:0.24, T:0.38
Consensus pattern (41 bp):
AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:21287284 original size:13 final size:14
Alignment explanation
Indices: 21287268--21287304 Score: 58
Period size: 13 Copynumber: 2.7 Consensus size: 14
21287258 AAATTTTTAA
21287268 AAAAAAAAAAAGG-
1 AAAAAAAAAAAGGC
*
21287281 AAAAAAAAAAGGGC
1 AAAAAAAAAAAGGC
21287295 AAAAAAAAAA
1 AAAAAAAAAA
21287305 CAATAAAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.84, C:0.03, G:0.14, T:0.00
Consensus pattern (14 bp):
AAAAAAAAAAAGGC
Found at i:21287483 original size:6 final size:6
Alignment explanation
Indices: 21287472--21287599 Score: 100
Period size: 6 Copynumber: 21.2 Consensus size: 6
21287462 AAGTATATGG
** * *
21287472 TTATTT TTATTT TTA-TT TTATTT TCGTTT TTATTT TCATTT TTAATT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
* * * * * *
21287519 TTAATT TTAATT TTAATT TTAATT TTATTT TAATTTT ATTATTA TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTA-TTT -TTATTT TTATTT
*
21287569 TATATATT TT-TTT TT-CTT TTATTT TTATTT T
1 T-TAT-TT TTATTT TTATTT TTATTT TTATTT T
21287600 AGCTATTTAC
Statistics
Matches: 102, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
5 13 0.13
6 75 0.74
7 9 0.09
8 5 0.05
ACGTcount: A:0.22, C:0.02, G:0.01, T:0.75
Consensus pattern (6 bp):
TTATTT
Found at i:21287492 original size:11 final size:11
Alignment explanation
Indices: 21287472--21287600 Score: 102
Period size: 11 Copynumber: 11.3 Consensus size: 11
21287462 AAGTATATGG
21287472 TTATTTTTATT
1 TTATTTTTATT
21287483 TT-TATTTTATT
1 TTAT-TTTTATT
*
21287494 TTCGTTTTTATT
1 TT-ATTTTTATT
21287506 TTCATTTTTAATT
1 TT-ATTTTT-ATT
*
21287519 TTAATTTTAATT
1 TT-ATTTTTATT
*
21287531 TTAATTTTAATT
1 TT-ATTTTTATT
*
21287543 TTATTTTAATT
1 TTATTTTTATT
*
21287554 TTATTATTA--
1 TTATTTTTATT
21287563 TTATTTTATATAT
1 TTATTTT-TAT-T
* *
21287576 TTTTTTTTCTT
1 TTATTTTTATT
21287587 TTATTTTTATT
1 TTATTTTTATT
21287598 TTA
1 TTA
21287601 GCTATTTACT
Statistics
Matches: 100, Mismatches: 10, Indels: 16
0.79 0.08 0.13
Matches are distributed among these distances:
9 6 0.06
10 3 0.03
11 40 0.40
12 34 0.34
13 17 0.17
ACGTcount: A:0.22, C:0.02, G:0.01, T:0.74
Consensus pattern (11 bp):
TTATTTTTATT
Found at i:21287520 original size:18 final size:17
Alignment explanation
Indices: 21287472--21287600 Score: 103
Period size: 17 Copynumber: 7.9 Consensus size: 17
21287462 AAGTATATGG
*
21287472 TTATTTTTATTTTTATT
1 TTATTTTTAATTTTATT
***
21287489 TTATTTTCGTTTTTATT
1 TTATTTTTAATTTTATT
21287506 TTCATTTTTAATTTTAATT
1 TT-ATTTTTAATTTT-ATT
*
21287525 TTAATTTTAATTTTAATT
1 TTATTTTTAATTTT-ATT
21287543 TTA-TTTTAATTTTA--
1 TTATTTTTAATTTTATT
*
21287557 TTATTATT-ATTTTA-T
1 TTATTTTTAATTTTATT
* *
21287572 ATATTTTT--TTTTCTT
1 TTATTTTTAATTTTATT
21287587 TTATTTTT-ATTTTA
1 TTATTTTTAATTTTA
21287601 GCTATTTACT
Statistics
Matches: 94, Mismatches: 12, Indels: 13
0.79 0.10 0.11
Matches are distributed among these distances:
14 13 0.14
15 17 0.18
16 5 0.05
17 27 0.29
18 27 0.29
19 5 0.05
ACGTcount: A:0.22, C:0.02, G:0.01, T:0.74
Consensus pattern (17 bp):
TTATTTTTAATTTTATT
Found at i:21287941 original size:6 final size:6
Alignment explanation
Indices: 21287875--21287981 Score: 85
Period size: 6 Copynumber: 17.5 Consensus size: 6
21287865 TAAGTATATG
* * * * *
21287875 TTTT-T TTTT-T TTTTGT TTTTAT TTTCAT TTTCAT TTTCAT TTTCAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT
* *
21287921 TTTTA- TTTTAT TTTTAT TTTTATT ATTATTAT TTTATAT ATATATT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTA-T -TT-TTAT TTT-TAT TTTTA-T TTTTAT
21287973 TTTTAT TTT
1 TTTTAT TTT
21287982 AGCTATTTAC
Statistics
Matches: 88, Mismatches: 7, Indels: 13
0.81 0.06 0.12
Matches are distributed among these distances:
5 14 0.16
6 57 0.65
7 11 0.12
8 3 0.03
9 3 0.03
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTAT
Found at i:21287948 original size:3 final size:3
Alignment explanation
Indices: 21287923--21288053 Score: 94
Period size: 3 Copynumber: 42.7 Consensus size: 3
21287913 ATTTTCATTT
* *
21287923 TTA TT- TTA TTT TTA TTT TTA TTA TTA TTA TT- TTA TATA TATA TT-
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA T-TA TTA
* * *
21287967 TT- TTA TTT TTA TT- TTA GCTA TTTA CTTA TTTA TTA ATA TGTA TATA
1 TTA TTA TTA TTA TTA TTA -TTA -TTA -TTA -TTA TTA TTA T-TA T-TA
21288013 TCT- TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
21288054 TTTTGTAATA
Statistics
Matches: 105, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
2 11 0.10
3 70 0.67
4 24 0.23
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:21287949 original size:18 final size:18
Alignment explanation
Indices: 21287878--21288050 Score: 90
Period size: 18 Copynumber: 9.4 Consensus size: 18
21287868 GTATATGTTT
* * *
21287878 TTTTTTTTTTTGTTTTTA
1 TTTTTATTTTTATTATTA
* *
21287896 TTTTCATTTTCATT-TTCA
1 TTTTTATTTTTATTATT-A
*
21287914 TTTTCATTTTTATT-TTA
1 TTTTTATTTTTATTATTA
21287931 TTTTTATTTTTATTATTA
1 TTTTTATTTTTATTATTA
21287949 ---TTA-TTTTATATATATA
1 TTTTTATTTTTAT-TAT-TA
21287965 TTTTTTATTTTTATT-TTA
1 -TTTTTATTTTTATTATTA
* *
21287983 GCTATTTACTTATTTATTAATA
1 --TTTTTA-TT-TTTATTATTA
* *
21288005 TGTATATATCTTTATTATTA
1 T-T-TTTATTTTTATTATTA
* *
21288025 TTATTATTATTATTATTA
1 TTTTTATTTTTATTATTA
*
21288043 TTATTATT
1 TTTTTATT
21288051 ATTTTTTGTA
Statistics
Matches: 123, Mismatches: 17, Indels: 30
0.72 0.10 0.18
Matches are distributed among these distances:
14 6 0.05
15 6 0.05
16 2 0.02
17 16 0.13
18 51 0.41
19 7 0.06
20 17 0.14
21 13 0.11
22 5 0.04
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.71
Consensus pattern (18 bp):
TTTTTATTTTTATTATTA
Found at i:21289965 original size:856 final size:849
Alignment explanation
Indices: 21288306--21290974 Score: 3107
Period size: 858 Copynumber: 3.1 Consensus size: 849
21288296 CATTATGTGT
* * * * * * ** * *
21288306 GCACAACCCCTGG-CCCCCCGATCATCGAAACGCCAATTCCGCCGACCAAGTTCTTCGACGATGG
1 GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGG
** ** * * * * *
21288370 -GCCCTGACGAAGAAAAATACGACACTAGCACATGCTCGAGCCCAGTATGTGCTGTCGTAACCCT
66 TGCCAAGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCT
** *
21288434 C-AGTCCAGTCTGATATTAGA-CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
131 CGA-TCTGGTCTGATACTAGATCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* *
21288497 CGTGCGGGCGCTCAGTCAGCCAGA-GGGACGGGATGCGCAA-GCTGGGGATCGGTCGGGTCCCCC
195 CGTGCGGGCGCTCAGCCGGCCAGAGGGGA-GGGATGCGCAAGGC-GGGGATCGGTCGGGTCCCCC
* * * * * * *
21288560 TCTGCATGCTGCCGATCCTACTGCTACAACCAATGGTCCTG-TCCAAACTTAGACTGGGAATGAA
258 TCTG-GTGCTGTCGATCCTACTGCTGCAACC-CTGAT-CTGATTCAATCTTAGACTGGGAATGAA
21288624 C-TCTGTATGCCTAAGCCAACCAACGCAACGACGAGCGGGCGGCGGGCGGGCACTACGTCGGCCA
320 CTTC-GTATGCCTAAGCCAACCAACG-AA--ACGAGC--G-GGCGGGCGGGCACTACGTCGGCCA
* *
21288688 AAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGAGTTTAGG-TACATCTTCATA
378 GAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCT-CATCTTCATA
* *
21288752 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACA
442 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * * *
21288817 TGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTCATGATTTTTCAAAATTTTGCGGTCCGG
507 TGAAGTTTCATGGCAAGACGACTCGTTTTATATTTTTCATGATTTTTGAAACTTTTGAGGTTCGG
*
21288881 GATTTTTTAAAATTTTTTCAGATTGGAG-TTTGGCCCCAAACTTGATAGACGTGATCCTTGTATT
572 GATTTTTTAAAATTTTTTCA-A-AGGAGTTTTGGCCCCAAACTTG-TAGACGTGATCCTTGT-TT
* ***
21288945 TTTTTGGCATGC-ACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGG
633 TTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTAAA
*
21289009 AAAAGTGTCCCCATTTCAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTC
698 AAAAGTGTCCCCATTTCAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
21289074 TTTAAGGGGGGTGTGAGTT-TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
763 TTTAA--GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
*
21289138 CAGCACCCATTGCACATCATATGC
826 CAGCACCCATCGCACATCATATGC
* * **
21289162 GCAAACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCAATCAGGTTCTCCGACGATG
1 GCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
* *
21289227 GTGCCAAGG-GAAGAAAAATGCGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCGCAACCC
65 GTGCCAAGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCC
21289291 TCGATCTGGTCTGAT-CTAGATC-GGGAATGAACCTCCGTATGCCTAAGTC-ACCCACGAAACGA
130 TCGATCTGGTCTGATACTAGATCTGGGAATGAA-CTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * *
21289353 GCGTGTGGGCGATGCAGCCGGCCAGAGGGGTGTGATGTGCAAGGCGGGGATCGATCGGGTCCCTC
194 GCGTGCGGGCGCT-CAGCCGGCCAGAGGGGAGGGATGCGCAAGGCGGGGATCGGTCGGGTCCCCC
*
21289418 TCTGGTGCTGTCGATCCTACTGCCGC-ACCCTCGATCTGATTCAATCTTAGACTGGGAATGAACT
258 TCTGGTGCTGTCGATCCTACTGCTGCAACCCT-GATCTGATTCAATCTTAGACTGGGAATGAACT
* *
21289482 TCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCAGGCGGGCACTACGCCGGCCAGAGAGACGG
322 TCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGG
* * **
21289547 GATGCGCAAG-CTTGGATCGAAAATGTGGTAGGTGGGTTTAGGCTCATCTTCATATTT-TGCATG
387 GATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTGCATG
*
21289610 CCCAATGCCATTTTTAATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCCACGTGAAGTT
452 -CCAATGCCATTTTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT-CACGTGAAGTT
* *
21289675 TCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTAAGGTTCGGGATTTTT
514 TCATGGCAAGACGACTCGTTTTATATTTTTCATGATTTTTGAAACTTTTGAGGTTCGGGATTTTT
*
21289740 TAAAATTTTTTCAAAGGAGTTTTGGCCCCAAACTTTGTAGACGTGACCCTTGGTTTTTTTATTGG
579 TAAAATTTTTTCAAAGGAGTTTTGGCCCCAAAC-TTGTAGACGTGATCCTT-G-TTTTTT-TTGG
** *
21289805 CATGCCAAAAAAAAATTTGGCCAAAAACTCGAAGTGTACAAGA-TTTGTGACCATGTAAAAAAAG
640 CATG-CAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT-TAAAAAAAG
*
21289869 TGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
703 TGTCCCCATTTCA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
21289934 AGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATTATAAGGG-CACAGTACCAG
767 AGGGG-TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA-TATAAGGGCCA-AGTACCAG
* *
21289998 CACTCCATCGCAAATCATGTGC
829 CAC-CCATCGCACATCATATGC
*
21290020 GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATACCGCCGGTCAGGTTCTCCGACGATGC
1 GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGG---T-------T-C
** * *
21290085 TCCGACGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
55 TCCGACGATGGTGCCAAGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCT
** * *
21290150 GCTACAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAAT
120 GCCGCAA-CC-C--T-CGATCTG------GTCT--G-AT--ACT-AG-AT-C-T-G----GGAAT
*
21290215 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGAG
160 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGAG
* * * * * * **
21290280 GGATGCGCAAGCCGGGGATCGGCCAGATCCCCCTCTACGTACTGTCGATCCTACTATTGCAACCC
225 GGATGCGCAAGGCGGGGATCGGTCGGGTCCCCCTCT-GGTGCTGTCGATCCTACTGCTGCAACCC
* * * * **
21290345 TTGATCCGA-TCTGATCTTAGATTGGGAATTAACTTCGTATGCCTAAGCCAACTGACGAAACGAG
289 -TGATCTGATTC-AATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCAACGAAACGA-
* * * *
21290409 CGGACGGGCGGGGGGCGTGCATTACGTCGGCAAGAGAGACGGGATGCGCAAGCCCTGGATCGATA
351 --G-CGGGC---GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATA
* *
21290474 GGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
410 GGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * * *
21290539 AAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGTCAAGATGACTTGTTTTATAT
475 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTATAT
* * * * * *
21290604 TTTTCACGATTTTTGAAGCTTTTTGTGGTTCGAGATTTTTGAAAATTTTTTCGGAAGGAGTTTTG
540 TTTTCATGATTTTTGAAAC-TTTTGAGGTTCGGGATTTTTTAAAATTTTTTC-AAAGGAGTTTTG
* *
21290669 GCCCCAAACATGGTAGACGTGATCC-----TTTTTTGGCAT-AAAAAAAAAATTCAGCTAAAAAC
603 GCCCCAAAC-TTGTAGACGTGATCCTTGTTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAAC
* ** * *
21290728 TTGAAGTGTACAAGATTTTGTGATGATTTGAAAAAAGTGTCCCCA-TTCAAACACGTTAATGGCT
667 TCGAAGTGTACAAGATTTTGTGACCA-TTAAAAAAAGTGTCCCCATTTC-AACACTTTAATGGCT
* *
21290792 ACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGTGTGAGTTCTCGAGGTTTAATGA
730 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
21290857 GGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGCACATTA-AGTGT
795 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATA-TGC
* * * *
21290912 GCACACCCCCCGG-CCCCCCGATCGCCAGAACCCTAATGCCGTCGGTCAGGTTCTCCGACGATG
1 GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATG
21290975 ATCCATCGAT
Statistics
Matches: 1562, Mismatches: 160, Indels: 158
0.83 0.09 0.08
Matches are distributed among these distances:
848 6 0.00
849 54 0.03
850 80 0.05
851 62 0.04
852 56 0.04
853 15 0.01
854 16 0.01
855 65 0.04
856 133 0.09
857 124 0.08
858 179 0.11
859 10 0.01
860 1 0.00
867 1 0.00
868 18 0.01
869 46 0.03
870 2 0.00
871 1 0.00
873 1 0.00
874 7 0.00
880 14 0.01
881 1 0.00
882 1 0.00
883 2 0.00
886 2 0.00
887 1 0.00
888 3 0.00
889 1 0.00
891 32 0.02
892 27 0.02
893 18 0.01
894 39 0.02
895 151 0.10
896 76 0.05
897 64 0.04
898 5 0.00
900 1 0.00
901 5 0.00
903 49 0.03
904 99 0.06
905 89 0.06
906 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (849 bp):
GCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGG
TGCCAAGGTGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCT
CGATCTGGTCTGATACTAGATCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
GTGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATGCGCAAGGCGGGGATCGGTCGGGTCCCCCTCT
GGTGCTGTCGATCCTACTGCTGCAACCCTGATCTGATTCAATCTTAGACTGGGAATGAACTTCGT
ATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
CGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCATCTTCATATTTCTGCATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTATATTTTTCATGATTTTTGAAACTTTTGAGGTTCGGGATTTTTTAAAATT
TTTTCAAAGGAGTTTTGGCCCCAAACTTGTAGACGTGATCCTTGTTTTTTTTGGCATGCAAAAAA
AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTAAAAAAAGTGTCCCCATTTCA
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
ATGC
Found at i:21290204 original size:26 final size:26
Alignment explanation
Indices: 21290175--21290227 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21290165 CCGATCTGAT
* *
21290175 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21290201 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21290227 C
1 C
21290228 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21294675 original size:26 final size:26
Alignment explanation
Indices: 21294637--21294689 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21294627 CCGGTCCGAT
** * *
21294637 CTTAGACTGGGAATTAACTCCTTATG
1 CTTAGACAAGGAATAAACTCCCTATG
21294663 CTTAGACAAGGAATAAACTCCCTATG
1 CTTAGACAAGGAATAAACTCCCTATG
21294689 C
1 C
21294690 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
CTTAGACAAGGAATAAACTCCCTATG
Found at i:21296416 original size:26 final size:26
Alignment explanation
Indices: 21296387--21296439 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21296377 CCGGTTCGAT
* *
21296387 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACCTCATATG
21296413 CTTAGACTGGGAATGAACCTCATATG
1 CTTAGACTGGGAATGAACCTCATATG
21296439 C
1 C
21296440 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCTCATATG
Found at i:21297306 original size:26 final size:26
Alignment explanation
Indices: 21297270--21297322 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21297260 CCGATCCGAT
21297270 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21297296 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21297322 C
1 C
21297323 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21298449 original size:902 final size:897
Alignment explanation
Indices: 21292014--21299488 Score: 9203
Period size: 902 Copynumber: 8.4 Consensus size: 897
21292004 CTGGTCCGAT
** * * * * *
21292014 CTTAGACTGGGAATGAACTCCAAATGCCTAAGTCAACCCACGAAATGACCATACGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
21292079 AGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCACAAG-CCGGGATCGGCTGGGTCCCCCTCTGCATGCTGCCGATCC
* * ** * * * *
21292144 TGCTACCGCAACCCTTAGTCCGGT-TCAATCTTAGACTAGGAATGAACTCCATATGGCTAAGCCA
130 TGCTGCCACAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
21292208 ACAGACGAAACGA-GTGCGTGAGTGGGCGGGCAGGCACTACGACGGCCAGAGAGACTGAATGCGC
194 ACCGACGAAATGACGAGCG-G-G-GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
21292272 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-TGCCAATAC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGC
21292336 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
321 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * **
21292401 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCTCGATTTTTTAAAATTTT
386 ACGACTCGTTTTCTATTTTTCACGA-TTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTT
* **
21292466 TTCGGAAGGAATTTTGGTGCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
450 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
** * *
21292531 AAAAATTCATTTGAAAACTCGAAGTGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCTAT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
21292596 TTCAGACACTTTAATGGCAATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
579 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGT
21292661 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
*
21292726 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCA-----
708 CATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* * *
21292786 T---G---TTCTCCGACGA---TGCTCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCC
771 TCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* *
21292842 CAGCACGTGCTGCCGCAACCCT---T--GGT---A-C--AG--T-----T----T--G-AT-
836 CAGCATGTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
21292878 CTTTGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** *
21292943 CAGCCAGAGGGGCGGGATGCACAAGCCGGGCATCGG-TCGGGTCCCTTTCTGCATGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCACAAGCCGGG-ATCGGCT-GGGTCCCCCTCTGCATGCTGCCGATC
* * * * ** * *
21293007 TTGCTACCACAACACTTGGTCCGGTCCAATATTAGACTGGGAATGAACTTCGTATGCCTAAGCCA
129 CTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
21293072 ACCGATGAAATGAGTGGGCGGGTGGGCGGGCGGGTGGGCACTACGCAGGCCAGAGAGATGTGATG
194 ACCGACGAAATGA-CGAGCGGG-GGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATG
* * * *
21293137 CGCAAGCCGTGGCTCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTTTGGGTGCCAA
253 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAA
* *
21293202 TGCCATTTTTAGGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGC
318 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
21293267 AAGACGACTCGTTTTTTATTTTTCACGATTTTCTAAACTTTTTACGGTTCGGGATTTTTTAAACT
383 AAGACGACTCGTTTTCTATTTTTCACGATTTTC-AAACTTTTTGCGGTTCGAGATTTTTTAAAAT
* *
21293332 TTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTGGGCATGCA
447 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
21293397 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
512 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
21293462 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGT
577 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGT
* * *
21293527 GTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCA-CAACTC
641 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TC
* * * * *
21293591 GCACATCATGTGTGCACA-------ACCCCCCGATCATCGGAACCCCAAAGCCGCCGGTCAGG--
705 ACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* **
21293647 -T-------T-CTCCGACGATGGTACCCCGACGAAGAAAAATGCGGCACCAGCACAAACCCGAGC
770 CTCCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * *
21293703 CCAGCATGTGCTATCGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACTCCGTATG
835 CCAGCATGTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * ** *
21293766 CTTATACTGGGAATGAATTTCATATGCCTAAGTCAACTCACAAAACGAGCGTATGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
21293831 CGGCCAGAGGGGTGGGATGCACAAGCCGAGGATCAG-TCGGGTCCCCCTCTGCGTGCTACTGATG
66 CGGCCAGAGGGGCGGGATGCACAAGCCG-GGATCGGCT-GGGTCCCCCTCTGCATGCTGCCGATC
* * * ** * * * **
21293895 TTGCTGCCACAACGCTCGGTTCGGTCCAACCTTAGACTCGGAATGAACTCTGTATGCCTAAGCTG
129 CTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
21293960 ACCGAC-AAA--ACGAGC---GGGTGGGCGGGCACTATGCCAGCCAGGGAGACGGGATAAGCAAG
194 ACCGACGAAATGACGAGCGGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
21294019 CCATGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * *
21294084 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGCCAAGGCG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
21294149 ACTCATTTTCTATTTTTCACGATTTTTGAAAC-TTTCGGGGTTCGAGATTTTTTAAAAATTTTTT
389 ACTCGTTTTCTATTTTTCACGA-TTTTCAAACTTTTTGCGGTTCGAGATTTTTT-AAAATTTTTT
* * * * * * *
21294213 -GAAAGGACTTTTTGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTTTTTTGACATCCACAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA--TTTTTGTTGGCATGCACAA
* * *
21294277 AAAAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGCGACCAATTGAAAAAAGTGTCCCCATT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
21294342 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGGGTGTG
580 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
* * *
21294407 AGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCTTCACAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
*
21294472 ATCATGTGCGCACACCCCCCCGGCCCCTCCGATCGTCGGGACCCCAATGCCGCCGGTCAGGTTCT
709 ATCATGTGCGCACA-CCCCCCGGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
** * ** * *
21294537 CCGGTGATGCTCCGACGATGGTGTCCCGACGAAGAAAAATGCTACACCAGCACCTGCCTGAGCCC
772 CCGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * * *
21294602 AGCATGTGCTATCGTAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATTAACTCCTTATG
837 AGCATGTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * * *
21294663 CTTAGACAAGGAATAAACTCCCTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
21294728 CGGCCAGAGGGGCGGGATGCAAAAGCTCTGGATCAG-TCAGGTCCCACTCTGCATGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCACAAGC-CGGGATCGGCT-GGGTCCCCCTCTGCATGCTGCCGATC
* * *
21294792 CTACTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *** *
21294857 ACCGACG-AA--ACGAGC---GGGCGGGCGGGCACTACGCTGGCCAGAGAGATACGACGCGCAAG
194 ACCGACGAAATGACGAGCGGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
21294916 CCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGCACATCTTCAAATTTCTGTGTGCCAACGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * *
21294981 TTTTGTGGCTTGTAATTTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
21295046 AGTCATTTTCTATTTTTTACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTT
389 ACTCGTTTTCTATTTTTCACGATTTTC-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
** * * * *
21295111 GGAAGGAGTTTTGTTCCCAAACTAGGTGGACGTGATCCTTGTATTTTTGTTGGCACGCATAAAAA
453 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
21295176 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
21295241 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGT
* * *
21295306 TCTCGAGGTTTGGTGAGGGATAAGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCACACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
* * * *
21295371 ATGTGCGCACAACCCCCGGCCCCCCAATCGTCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGAC
712 ATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * ** ** * * *
21295436 GATGCTTCGACGATGGTGCCCCGGGGAAGAAAAATATGGCAGCAGCACATGCTCGAGCCCAACAT
777 AATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
*
21295501 GTGCTGCCGCAA-CC-C--T-C-G---G-TC-----C----AAT---CT--G-AT-
842 GTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * * *
21295531 CTTAGACTGGGAAAAAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
21295596 CAGCCAG-GGGGCGGCATGCGCAAGCCGGGGATTGGCCGGGTCCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCC-GGGATCGGCTGGGTCCCCCTCTGCATGCTGCCGATCC
* * * * * *
21295660 TGCTGCCACAACCGTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCTAA
130 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
21295725 CCGATG-AA--ACGAGC---GGGCGAGCGGGCACTACGCCGGGCAGAGAGACGGGATGCGCAGGT
195 CCGACGAAATGACGAGCGGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
21295784 CGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
260 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* *
21295849 TTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGA
325 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
21295914 CTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
390 CTCGTTTTCTATTTTTCACGATTTTC-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
* * * * *
21295979 GAAGGACTTTTGGCCCCAAACTTGTTAGACGTGATCTTTGTATTTTTCTTAGCATGCACAAAAAA
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
21296044 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
21296109 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCCAATGCTCTTTAAGGGAATGCGAGTT
584 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTT
* * *
21296174 CTCGATGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCA
648 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
* * ** * *
21296239 TGCGCGTACACCCCCCGGCCCCCCGATCACCGGAACCCCAATACCGCCAGTCAGGTTCTCC-G--
713 TGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCA
* * *
21296301 --G----G--GATGGTGCCTCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
778 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* ** * *
21296358 TGCTG-CTGCGACCCTTGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCGTATG
843 TGCTGTC-GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * ** * *
21296413 CTTAGACTGGGAATGAAC-CTCATATGCCTAAGTCAACCAACAAAATAAGTGTGCGGGCGCTCAA
1 CTTAGACTGGGAATGAACTC-CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
21296477 CCGGCCAGAGGGGCGGGATGCACAAGTCGTGGATCGGCCAGGTCCCCCTCTACATGCTGCTGATC
65 CCGGCCAGAGGGGCGGGATGCACAAGCCG-GGATCGGCTGGGTCCCCCTCTGCATGCTGCCGATC
* * ** * * *
21296542 CTACTACCGTAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCGGTATGCCTAAGCCA
129 CTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * *
21296607 ATCGACGAAAT---GAGC---GGGCGAACGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAG
194 ACCGACGAAATGACGAGCGGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
*
21296666 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
** * * *
21296731 TTTTATCACTCGTAAATTCAGACAATGGTCCCTTTAGCCTTCACGTGAAGTTTCATGGCAAGACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
21296796 ACTTGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGAGATTTTTTTAAATTTTTTC
389 ACTCGTTTTCTATTTTTCACGATTTTC-AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* *
21296861 AGAAGGAGTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
453 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
21296926 AATTCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
21296991 GACACTTTAATGGCTACTGGCAGAAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGT
* *
21297056 TCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
** * *
21297121 ATGTGCGCACACCCCCCGGCCTGCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCT-C--C
712 ATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
* * * * * **
21297183 AA------G--GATCGTGCCCTGGCGAAGAAAAATACAGCACCAGCACGCGCCCGAGCCCAGCAT
777 AATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* *
21297240 GTGCTGTCGCAACCCTCAGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATG
842 GTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
21297296 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACTAGCGTGCGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * *
21297361 CAGCCAGAAGGGCAGGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTACTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCACAAGCC-GGGATCGGCTGGGTCCCCCTCTGCATGCTGCCGATCC
* *
21297426 TACTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
21297491 CCGACGAAATGA-GCAGGCGAGCAGGTGGGCAGGCACTACACCGGCCAGAGAGACGGGATGCACA
195 CCGACGAAATGACG-A-GCG-GGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ** *
21297555 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCGTATCTTCATATTTCTGCCTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * *
21297620 ATTTTGATGGCTTGTACATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
21297685 CGACTCATTTTCTATATTTCATGATTTTCACAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCACGATTTTCA-AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * **
21297750 TCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAATTTT-TTGGCATGCGTAAA
451 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
21297814 AAAATTTAGCTAAAAACTCAAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
21297879 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGTGTGAG
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAG
* *
21297944 TTCTCGAGGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCACACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* * * *
21298009 CATGTGCGCACACCCCCTCGGCCCCCCCGATCGTCGGAACCCAAATGCTGTCGGTCAGTTTCTCC
711 CATGTGCGCACACCCCC-CGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
21298074 GGCAATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAA
774 GGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * * ** *
21298139 CATGTGCTACCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAATTGTGTGTG
839 CATGTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
21298198 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAATCCACGAAATGAGCATGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
21298263 CTGCCAGAGGGGCGGGATGCACAAGCCAGGGATCAGCTGGGTCCCCCTTTGCATGCTACCGATCG
66 CGGCCAGAGGGGCGGGATGCACAAGCC-GGGATCGGCTGGGTCCCCCTCTGCATGCTGCCGATCC
*** *
21298328 TGCTGCTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAGCCAA
130 TGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
21298393 CCGACGAAATGAGCGTGCGGGTGGGCGGGCGGGTACTACGCTGGCCAAAGAGACGGGATGCGCAA
195 CCGACGAAATGA-CGAGCGGG-GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
21298458 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTTTGCATGCCAATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* * *
21298523 TTTTTATGGCTTGTAAATTCATACAATGATCCCTTAAGCCTTCATGTGAAGTTTCATGGTAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
21298588 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCACGA-TTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
*
21298653 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAGAAAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
21298718 CAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTT
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
21298783 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAG
* *
21298848 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT-TCAGCACCCATCGCACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* * * * * * *
21298912 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCCGAACCCTAACGTCGACGATCAGGTTCTCCG
711 CATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * ** * * *
21298977 GTAATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCCAGCCTAGC
775 GCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* ** * *
21299042 ATGTGCTGTCGCAACCCTCGGTCCAATCCGATCTTACACTGGAAATGAACTCCGTATG
840 ATGTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
21299100 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGCGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** *
21299165 CGGCCA-AGGGGGTGGGATGCGTAAGCCGGGGATCGGCTGGGTCCCCCTCTGCATCCTGCCGATC
66 CGGCCAGA-GGGGCGGGATGCACAAGCC-GGGATCGGCTGGGTCCCCCTCTGCATGCTGCCGATC
* **
21299229 CTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
21299294 ACCGACGAAATGAGCGAGCGGGCGAGCGGACGGGCACTATGCGGGCCAGAGAGACGGGATGTGAA
194 ACCGACGAAATGA-CGAGCGGG-GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * **
21299359 AGCCGTGGATCGATATGGTTGTAGGTGGGTTTACGCACATCTTCATATTTATATGTGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * *
21299424 ATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCGCATGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
21299489 TTTTGGGACC
Statistics
Matches: 5735, Mismatches: 731, Indels: 252
0.85 0.11 0.04
Matches are distributed among these distances:
855 1 0.00
856 54 0.01
857 2 0.00
858 1 0.00
859 41 0.01
860 2 0.00
861 2 0.00
862 59 0.01
863 4 0.00
864 177 0.03
865 3 0.00
866 12 0.00
867 619 0.11
868 306 0.05
869 214 0.04
870 1 0.00
871 2 0.00
872 2 0.00
873 2 0.00
875 64 0.01
876 180 0.03
877 213 0.04
878 3 0.00
879 1 0.00
880 9 0.00
881 3 0.00
882 60 0.01
883 895 0.16
884 11 0.00
885 7 0.00
886 32 0.01
887 7 0.00
888 166 0.03
889 89 0.02
890 134 0.02
891 285 0.05
892 1 0.00
893 2 0.00
894 101 0.02
895 11 0.00
896 215 0.04
897 457 0.08
898 54 0.01
900 1 0.00
901 2 0.00
902 1009 0.18
903 168 0.03
904 51 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCACAAGCCGGGATCGGCTGGGTCCCCCTCTGCATGCTGCCGATCCT
GCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAATGACGAGCGGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTCAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCAATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGTCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:21299103 original size:26 final size:26
Alignment explanation
Indices: 21299074--21299126 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21299064 CCAATCCGAT
21299074 CTTACACTGGAAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
* *
21299100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
21299126 C
1 C
21299127 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGAAATGAACTCCGTATG
Found at i:21300157 original size:733 final size:736
Alignment explanation
Indices: 21298744--21300221 Score: 2053
Period size: 733 Copynumber: 2.0 Consensus size: 736
21298734 TCAAAGTGTA
* * * *
21298744 CAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCA
1 CAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCA
*
21298809 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGCTTGATGAGGGATAGGG
*
21298874 GGCCAATATAAGGGCCAAGTTCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
131 GGCCAATATAAGGGCCAAGTACAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* ** * * **
21298939 GATCGCCCGAACCCTAACGTCGACGATCAGGTTCTCCGGTAATGCTCTGGCGATGGTGCCCCGGT
196 GATCGCCCGAACCCCAAC-TCGACGATCAGG-T-TCAAGT-ATGCTCCGACGATGGTGCCCCGAC
* *
21299004 GAAGAAAAATACGGCACCAGCACATGCCCCAGCCTAGCATGTGCTGTCGCAACCCTCGGTCCAAT
257 GAAGAAAAATACGGCACCAGCACATGCCCCAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAAT
*
21299069 CCGATCTTACACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
322 CCGATCTTACACTGGAAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTC
* * * * * * *
21299134 AACCCATGAAACGAGCGTGCGCGCGCTCAGTCGGCCAAGGGGGTGGGATGCGTAAGCCGGGGATC
387 AACCCACGAAACGAGCATACGCGCGCTCAGCCAGCCAAGGGGGTGGGATGCGCAAGCCAGGGATC
* * *
21299199 GGCTGGGTCCCCCTCTGCATCCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAG
452 GGCTAGGTCCCCCTCTACATCCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATCCAATCTTAG
* *
21299264 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGAGCGGACGGGC
517 ACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAATGAACGAGCGGGCGAGCGGACGGGC
* * * * * * *
21299329 ACTATGCGGGCCAGAGAGACGGGATGTGAAAGCCGTGGATCGATATGGTTGTAGGTGGGTTTACG
582 ACTACGCCGGCCAGAAAGACGGGATGCGAAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTACG
* *
21299394 CACATCTTCATATTTATATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCT
647 CACATCTTCATATTTATACGTGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCT
*
21299459 TAAGCCTTCGCATGAAGTTTCATGG
712 TAAGCCTTCACATGAAGTTTCATGG
21299484 CAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCA
1 CAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCA
**
21299549 AACCTGTAAAATCTCAAATGCTCTTTAAGGGAG-TGTGAGTTCTCGCTGCTTGATGAGGGATAGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAGGG-GCTGTGAGTTCTCGAGGCTTGATGAGGGATAGG
* * * *
21299613 GGGCCAATATGAGGGCCAAGTAACAGCACCCATCGTACATTATGTGCGTACAACCCCCCCGGCCC
130 GGGCCAATATAAGGGCCAAGT-ACAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCCGG-CC
** *
21299678 CCCCCGATCGCTGGAACCCCAA-T-GCCG-TC-GG-TCAAGT-T-CTCCGACGATGGTGCCCCGA
191 CCCCCGATCGCCCGAACCCCAACTCGACGATCAGGTTCAAGTATGCTCCGACGATGGTGCCCCGA
* * * **
21299736 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGG
256 CGAAGAAAAATACGGCACCAGCACATGCCCCAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAA
** *
21299801 TCCGATCTTAGGCT-GAGAATGAACTCCGTATGCTTAGACTGGAAATGAACTTCGTATGCCTAAG
321 TCCGATCTTACACTGGA-AATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAG
* *
21299865 TCAACCCACGAAACGAGTATACGGGCGCTCAGCCAGCC-AGAGGGGTGGGATGCGCAAGCCAGGG
385 TCAACCCACGAAACGAGCATACGCGCGCTCAGCCAGCCAAG-GGGGTGGGATGCGCAAGCCAGGG
* * ** *** * * **
21299929 ATCGGCTAGGTCCCCCTCTACGTGCTGTTGATCCTGCTGCTGTAACCCTCGGTCTGATCTGATCT
449 ATCGGCTAGGTCCCCCTCTACATCCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATCCAATCT
* * * *
21299994 TAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAATGAATGGGTGGGCG-GACGGGC
514 TAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAATGAACGAGCGGGCGAG-CGGAC
*
21300058 GGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
578 GGGCACTACGCCGGCCAGAAAGACGGGATGCGAAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
* * * *
21300123 TAGGCACATCTTCATATTTCA-GCGTGACAATGCCATTTTTCTGGCTTGTAAATTCATACAATGG
643 TACGCACATCTTCATATTT-ATACGTGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGC
*
21300187 TCCCTTAAGCCTTCACGTGAAGTTTCATGG
707 TCCCTTAAGCCTTCACATGAAGTTTCATGG
21300217 CAAGA
1 CAAGA
21300222 CGATTCGTTT
Statistics
Matches: 651, Mismatches: 78, Indels: 25
0.86 0.10 0.03
Matches are distributed among these distances:
732 5 0.01
733 436 0.67
734 2 0.00
736 4 0.01
739 2 0.00
740 142 0.22
741 29 0.04
742 2 0.00
743 8 0.01
744 21 0.03
ACGTcount: A:0.25, C:0.27, G:0.27, T:0.22
Consensus pattern (736 bp):
CAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGCTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
GATCGCCCGAACCCCAACTCGACGATCAGGTTCAAGTATGCTCCGACGATGGTGCCCCGACGAAG
AAAAATACGGCACCAGCACATGCCCCAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCCGA
TCTTACACTGGAAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCATACGCGCGCTCAGCCAGCCAAGGGGGTGGGATGCGCAAGCCAGGGATCGGCT
AGGTCCCCCTCTACATCCTGCCGATCCTGCTGCCACAACCCTCAGTCCGATCCAATCTTAGACTG
GGAATGAACTACGTATGCCTAAGCCAACCGACGAAATGAACGAGCGGGCGAGCGGACGGGCACTA
CGCCGGCCAGAAAGACGGGATGCGAAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTACGCACA
TCTTCATATTTATACGTGACAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAG
CCTTCACATGAAGTTTCATGG
Found at i:21300740 original size:26 final size:26
Alignment explanation
Indices: 21300711--21300763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21300701 CCGGTTCGAT
* *
21300711 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21300737 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21300763 C
1 C
21300764 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21300925 original size:904 final size:901
Alignment explanation
Indices: 21299484--21309634 Score: 11338
Period size: 904 Copynumber: 11.4 Consensus size: 901
21299474 AGTTTCATGG
* *
21299484 CAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCA
1 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* ** *
21299549 AACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGCTGCTTGATGAGGGATAGGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * *
21299614 GGCCAATATGAGGGCCAAGTAACAGCACCCATCGTACATTATGTGCGTACAACCCCCCCGGCCCC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGG-CCC
*
21299679 CCCCGATCG-CTGGAACCCCAATGCCGTCGGTCAAGTTCT-C--CGA-----C---GATGGTGCC
194 CCCCGATCGTC-GGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCC
*
21299732 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGT
257 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * * *
21299797 TCGGTCCGATCTTAGGCTGAGAATGAACTCCGTATGCTTAGACTGGAAATGAACTTCGTATGCCT
322 CCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
** * * **
21299862 AAGTCAACCCACGAAACGAGTATACGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCAG
387 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCTGG
* * * ** * * * * * *
21299927 GGATCG-GCTAGGTCCCCCTCTACGTGCTGTTGATCCTGCTGCTGTAACCCTCGGTCTGATCTGA
452 GGATCGATC-GGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGATTTGGTCTGA
* * *
21299991 TCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGACGAAATGAATGGGTGGGCGGACGG
516 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A-GGGCGGGCGGACGG
* *
21300056 GCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
579 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
21300121 TTTAGGCACATCTTCATATTTCAGCGTGACAATGCCATTTTTCTGGCTTGTAAATTCATACAATG
644 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
21300186 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTT
709 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
** *
21300251 GAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGCGTTTTGGCCCCAAACTTGGT
774 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
21300316 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAGAAACTCAAATTGTA
839 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
21300379 CAAGCTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACGTTAATGGCTACTGGCAGCA
1 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
21300444 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
21300509 GGCCAATAAAAGGGCCAAGTACCAGCACTCATCACACATCATGTGCGCACACCCCCCCGGCCCCC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * * *
21300574 CCGATCGTTGAAACCCCATTGTCGCAGGTTAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCG
196 CCGATCGTCGGAACCCCAATGCCGC-GGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCG
* * * *
21300639 GCGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCTTCCGTCCG
260 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * *
21300704 GTTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATAAACTCCGTATGCCTAAA
325 GTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
21300769 TCAACCCACGAAACGAGTGTGGGGGTGTTCAGCCAGCCAGAGGGGCGGGCTACGCAAGCTGGGGA
390 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCTGGGGA
* * *
21300834 TCGATCGGGTGCCCCTCTATGTGTTGCCGATCCTGCTACCGCAACCCTCGATTTGGTCCGATCTT
455 TCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGATTTGGTCTGATCTT
** *
21300899 AGACTGGGAATGAACTCCGTATGCCTAAGGGAACCGACGAAACGAGCAGGCGGGAAGG-CGGGCG
520 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG--GGCGGG-CGGACGGGCG
* * * *
21300963 GGCACTACGCCAGCCAAAGAAACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
582 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
21301028 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
647 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
21301093 CCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAA
712 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * * * *
21301158 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGATTTTTGGCCCTAAACAAT-GTAG
777 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC-TTGGTAG
* * * *
21301222 ACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTA
841 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
21301283 CAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAACA
1 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
21301348 AACCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA---
66 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
21301410 GG---------GGGCCAA-TACCAGCACCCATTGCACATCATGTGCACAGACCCCCCTGGCCCCC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * *
21301465 CCGATCG-CTGGAACCCTAATGCCGTCGGTCAGGTTCTCCAACGATGCTCCGACGATGGTGCCCC
196 CCGATCGTC-GGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCC
* * * ** **
21301529 GATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATTTGCTGTTGCAACCCTCGGTTT
259 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
21301594 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGCATGCCTAA
324 GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
21301659 GTCAACCCATGAAATGAGTGTGCGGGCGCTCAGCC-GACCAGAGGGGCAGGATGCGCAAGCCGGG
389 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGCGGGATGCGCAAGCTGGG
* * * * * *
21301723 GATCGGTCGGGTCCTCCTCTATGTGCTACTGATCCTGCTACCGCAACCCTCGGTCTGGTCTGATC
453 GATCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGATTTGGTCTGATC
* * * * *
21301788 TTAGATTGGTAATGATCTCCGTATGCCTAAGCCAACCTACGAAACGAGCGGGAGGGC-GAGCGGG
518 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GGGCGGGCGGA-CGGG
* * *
21301852 CGGGCACTACGTCGGCTAGAGAGACGGGTTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
580 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
21301917 TTAGGCACATCCTCATATTGCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
645 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* **
21301982 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTCC
710 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * *
21302046 AAATCTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGT
775 AAA-CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* * *
21302111 AGACGTGATCCTTGTATTTTT-TTGGCATGCATAAAAAAATTTAGCTAAAAACTCTAAGTGTA
839 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
21302173 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTAGCAGCA
1 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
21302238 AACCTAG-AAAATCTCAAATCCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATATG
66 AACCT-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
21302301 GGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCACATCATGTGCGCACACTCCCCTCGGCCT
130 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCC
**
21302366 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCC
194 CCCCGATCGTCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCC
* * * *
21302431 CGACGAAGAAAAATACGGCACCAGCACATGTCCGAGTCTAGCATGTGCTGTCGCAACCCTCGGTC
258 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
21302496 TGGTTCGATCTTAGACTAGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
323 CGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
21302561 AGTCAACCCACGAAACGAGCAT--------T--------CAGAGGGGCGGGATGCGCAAGCCGAG
388 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCTGGG
* ** * * * * *
21302610 GATCGATCGGGTCCCCCACTGCGTGCTACCGATCCTGCTACCGTAGCCCTC-AGTTCGGTTTGAT
453 GATCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGA-TTTGGTCTGAT
* *
21302674 CTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGACGAAACGA--GCGGGCGGGCGGGCG
517 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGCGGGCGGACGGGCG
* * * * *
21302737 GG-GCTACGCCGGCCAGAGAGACGTGATGCACGAGCCGTTGATCGATAGGGTGGTAGGTGGGTTT
582 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
21302801 AGGGACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTC
647 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
21302866 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCATGATTTTTGAA
712 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * * *
21302931 ACTTTTTGCGGTT-TGCGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAAGTTGGTAG
777 ACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
21302995 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAACTGTA
841 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * *
21303056 TAAGATTTTGTGACTATTTGAAAAAAATGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCA
1 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
21303121 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAAGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
21303186 GGCCAATATAAGGGCCAAGTACCAGCCCCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* **
21303250 CCGATCATCGGAACCCCAATGTCATCGGTCAGGTTCTCC-A--A-----C---GATGGTGCCCCG
196 CCGATCGTCGGAACCCCAATG-CCGCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCG
* * * * * * * * *
21303304 GCAAAGAAAAATGCGGCATCGGCACAAGCCCCAGCCCAGTATGTGCTGTCC-CAA--C-C-AT-C
260 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-CCGCAACCCTCGGTCC
*
21303363 -G---G-TC-----C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCGTAA
324 GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
21303407 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GACCAGGGGGGCGGGATGCGTAAG-TCGG
389 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGCGGGATGCGCAAGCT-GG
* * * * * * **
21303470 GGATCGATCGGGTCCCTCTTTGTGTCCTGCCGATCCTGCTGCTGCAACCCTC-AGTTTGGAATGA
452 GGATCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGA-TTTGGTCTGA
*
21303534 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GCGGGCAGACGGGC
516 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGCGGGCGGACGGGC
*
21303597 GGGCACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
581 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
21303662 TAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
646 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
21303727 CCCTCAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCATTTTCTATTTTTCATGATTTTTGA
711 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* *
21303792 AACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAA-GAGTTTTGGCCCCAAACATGGTA
776 AACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
21303856 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACACGAAGGGTA
840 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
** * *
21303918 CAAGATTTTGTGACCATTTGAAAAAAGTGTCTGCATTTTAGACACTTTAATGGCTACTGGCACCA
1 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
21303983 AACCTGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAGTACTTGAGGTTTGATGAGGGATAGGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * * *
21304048 GGCCAATATAAGGGCCAAGTACCAGCA--CATTGGCAAATCACGTCCACACACCCCGTCCGGCCC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCATGTGCGCACACCCC-CCCGGCCC
* * ** * * * ** *
21304111 CCCTGATCGTCGGAACCCCAATGCTGTCTCTCAGGTTCTCCGGCGATCCTTCGGCGATGGTACCC
194 CCCCGATCGTCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCC
* * * * *
21304176 CGACGAAGAAAAATTCGTCACCAGCACATGCCCAATCCCAGCATGTGCTGCCACAA---T--G--
258 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*
21304234 C---TCGGTC-----C-------G-A-TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTA
323 CGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * **
21304280 AGTCAACCCACGAAATGAGCGTGCGGGGGCTCAGCCGGTCAGAAGGGCGTCATGCGCAAGCTGAG
388 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCT--G
* * * **
21304345 GATGCGTAAGTCGGGGATCGACTGGGTCCCCCTCTACGTGCTGCCAATGCTGCTGTCGCAACCCT
451 G--G-G--A-TC---GAT---C-GGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCT
* * ** * *
21304410 CGGTTCGGTCCAATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGATGAAACGA--G
503 CGATTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGG
* * * * * *
21304473 CGGGCGGGCGGGCAGGCACTACGCTGGCCAGAGATACGGGATACGCAAGCCATGGATCGATAGGG
568 CGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
21304538 TGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
633 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * *
21304603 TTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGAAAGACGACTCATTTTCTATTTT
698 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
21304668 TCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAA-GAGTTTTGGC
763 TCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGC
* *
21304732 CCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAAC
827 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
21304797 ACGAAGTGTA
892 TCGAAGTGTA
* *
21304807 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGTA
1 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
21304872 AACCTGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTACTCGAGGTTTGATGAGGGATAGGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
21304937 GCCCAATATAAGGGCCAAGTACCAGCACCCATGGCAAATCATGTGCGCACA--CCCCCGACCCCC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * *
21305000 CCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTTCGGCGATGCTCCGATGATGGTACCCCG
196 CCGATCGTCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCG
** * * * *
21305065 ACGAAGAAAAATTTGGCACCTGCACTTGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTG
260 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
*
21305130 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
325 GTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * ** * * * * **
21305195 TCAACCCATGGAACGAGCGTGTTGGCGCTCAACCGGCCAAAGGGGCAGGATGCGCAAG-TCAAGG
390 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCT-GGGG
* ** ** * * ** * ** *
21305259 ATCGATTGAATCCCCCTCTGCGTGCTGCCGATCCTACTGCCATAACCCTCAATCCGATCTGATCT
454 ATCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGATTTGGTCTGATCT
** * * *
21305324 TAGACAAGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCAGCGGGCGGACGGGCGG
519 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GGCGGGCGGACGGGCGG
* * * *
21305389 GCACTACGTCGGCCAGAAAGACGGGATGCACAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTA
583 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * **
21305454 GGAAGATCTTCATATTTCTGCATGCCAATGATATTTTTATGGCTTGTAAATTCATACAATGGTCC
648 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
21305519 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAA
713 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* *
21305584 CTTTTTACGGGTCAGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCGAACTTGGTAGA
778 CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
21305648 CATGATCCTTGTGTTTTTATTGGCATGCACAAAAAAATTCAGCTAGAAACTTGAAGTGTA
842 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
21305708 CAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCTGACACTTTAATGGCTACTGGCAGCA
1 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
21305772 AACCTGTAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
66 AACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * * * *
21305837 GGGCCAGTATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTACACAAACCCCCCCGACCCC
130 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * * * *
21305902 CCCGATTGCCGG-ACCCCAATGCCGTCGGTAAGG---T-------TG-TCCGGTGATGGTTCCTC
195 CCCGATCGTCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCC
* * * * * *
21305955 GATGAAGAAAAATGCGGCA-CAGCACATGCCCGAACCCAGCATGTGCTACCGCAAACCTCGATCC
259 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * * * *
21306019 GATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCTTAG
324 GGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA-
* *** ** * * * *
21306084 ACTGTGAATGAACTTTGTATGCTTAGAC-TG-GGAATAAACTCTGTATGCCTAAGTCAACCCACG
388 A--GTCAACCCAC---G-AAAC-GAG-CGTGCGG-----GCGCT-CA-GCC--AG-----CCA--
* * ** **** **** *
21306147 GAAGGAGCGCGCGGGCACT-CAGCAGGCCAGAGGGGAGAGAT-GAGAAAGCCAGGGAT-TGAT-C
429 G-A-G-G-G-GCGGG-A-TGC-GCAAG-C--TGGGGATCGATCG-GGTCCCCCTCTATGTGCTGC
* * ** * * ** * * * ** * * * *
21306208 AGGTCCCCCT-CTGCATGCTGTCTATTCTGCTACTGCAACCCTCGGTCCGGTCCAATTTTAGACT
482 CGATCCTGCTACCGCA-ACCCTCGATT-TGGT-CTG--A-TCTTAGACTGG--GAA--TGA-ACT
** * * * * * * ** * * * ** *
21306272 GGGAATGAACTCAG-TATGCCTA--AGCCAACCGACGAAAC-GAGCGGGCGGGCAGGCGGACGGG
536 CCGTATG-CCTAAGCCA-ACCGACGAAACGA-GGGCG-GGCGGA-CGGGCGGGCA--C-TAC--G
* * *
21306333 CACTACATCGGCCAGAGAGACAGGATGCGCAAGCCATCGATCGATAGGGTGGTAGGTGGGTTTAG
591 -----C--CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
21306398 GCACATCTTCATATTTCTACGTGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
649 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
21306463 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAAC
714 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * *
21306528 TTTTTATGGTT-TGAGATTTTTTAAAATTTTTACGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
779 TTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
21306592 GTGATCATTGTATTTTTGTTGGCATGCACAAAAAAAGTCAACTAAAAACTCGAAGTGTA
843 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
21306651 CAAGATTTTGTGGCAATTTGAAAAAAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGCA
1 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
21306716 AACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
21306781 GGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCCC-ACCCCC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
** * * * * *
21306845 TTGATCGCCGGAACCCTAATGCCGGCGATCAAGTTCTCCCG-CGATGCTCC-AGCGATGGTGCCC
196 CCGATCGTCGGAACCCCAATGCC-GCGGTCAGGTTCT-CCGACGATGCTCCGA-TGATGGTGCCC
* ** * *
21306908 C-AGTGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCGC-ACCCATCAG
258 CGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCGG
* * *
21306971 TTCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-AGAATGAACTCCGTATGCC
321 TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
21307035 TAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCTAGAAGGGCGGGATGCGCAAG-TA
386 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCT-
* * * * * **
21307099 GGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTATCGTAACCCTAG-TTTGGTCCA
450 GGGGATCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGATTTGGTCTG
* * **
21307163 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA--GTGGGCGGGTGGG
515 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGCGGGCGGACGGG
* * * ** *
21307226 CAGGCACTACGCCGGCCAAAAAGATAGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
580 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *** * *
21307291 TTAGGCACATCTTCCTATTTCTATGTGCCAAAGCCATTTTTGTGGCTTGTAAATTCATACAATGG
645 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
21307356 TCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG--TTC------TC-T-ATTTTT-
710 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* *
21307410 ---C-----AC---T----A-TTTTTAAAACTTTTTT-GGAAGGAGTTTTGGCCTCAAACTTGGT
775 AAACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* * * * * * *
21307458 GGACGTAATCCCTGTATTTTTTTTGGCATGCACAAAAATATTCAACTAAAAACTCAAAGTGTA
839 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
21307521 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGGCAGCA
1 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
21307586 AACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
21307651 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGTGTGCGCACA---------CCCCC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * * *
21307707 CCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCTCG
196 CCGATCGTCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCG
** * * * * * *
21307772 GTGAAGAAAAATACGACACCAACATATGCTCGAGCCCAACATGTGCTGTCGCAACCCAT-GGTCC
260 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCGGTCC
* * * * * * *
21307836 AG-TCTGATCTTTGACTGGGAATGATCTTCATATGCTTAGACTGGGAATGAACTCCATATGCTTA
324 GGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * ** * * * ** *
21307900 AGTGAACCCACGAAATGAATGTGCGGGTGCTCAGCC-GACCAGCGAGGTAGGATGCACAAG-TCG
388 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGCGGGATGCGCAAGCT-G
* * ** *** ** ** * * *
21307963 GGGATCGGTCGGGTCCTCGACTGCATGCTGTAGATCCTGCGGCTGCAACCCTCGGTTCGGTCTGA
451 GGGATCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGATTTGGTCTGA
* * * *
21308028 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCATGCGGGTGGGCGG
516 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG--GGCGGGCGGACGG
* * **
21308093 GCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGAT
579 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
21308158 TTTGGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGTCTTGTAAATTCATACAATG
644 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
21308223 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTC
709 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * *
21308288 AAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTGGGAAA-GTGTTTTGGCCCCAAACTTGG
774 GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT-CGAAAGGAGTTTTGGCCCCAAACTTGG
* * *
21308352 TAGACGTGATCCTTGTATTTCTGTTGGCATGCACAAAACAATTCAGCTAAAAAATCGAAGTGTA
838 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
21308416 CAAGATTTTGTGACCATTTGAATAAAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCA
1 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
21308481 AACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGA
66 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
21308545 GGCCAATATAA-GGCCAGGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCCGG-CCCC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* *
21308608 CCGATCGTCGGAACCCCAATGCCACCAGTCAGGTTCT-C--C---G----G-TGATGGTGCCCCG
196 CCGATCGTCGGAACCCCAATGCC-GCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCG
* **
21308662 ATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTA
260 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * * * *
21308727 GTTCGATCTTAGACAGAGAATGAACTTCGTGTGCTTAGACTGGGAGTGAACTCCGTATGCCTAAG
325 GTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * ** **
21308792 TCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCACGATGCGCAAGCCAGGGA
390 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCTGGGGA
* ** * * * * * ** * * ** * *
21308857 TTGGCCAGGTCCCCTTCTACGTGCTACCGATCCTGCAACCATAACCCTTGGTCCGATCCGATCTT
455 TCGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGATTTGGTCTGATCTT
* * * * * **
21308922 AGACTAGGAATGAACT-CGATATGCCTAAGCCAACTGATGAATCGA--GCGGACGGGGGGGCGGG
520 AGACTGGGAATGAACTCCG-TATGCCTAAGCCAACCGACGAAACGAGGGCGGGCGGACGGGCGGG
* * *
21308984 CACTATGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCCATAGGGTGGTAGGTGGGTTTAG
584 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
21309049 GCACATCTTCATATTTCTGCATGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
649 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
21309114 TTAAGCCTTCGCGTGAAGTTTAATGGCAAGATGACTTGTTTTCTATTTTTCACGATTTTTGAAAC
714 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * * * * *
21309179 TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGCTCTGGACCCAAACTTTGTAGACG
779 TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * *
21309244 TGAGCCCTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGGTAAAAACTCGTAGTGTA
844 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
21309302 CAAGATTTTGTTACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTCGCAGCA
1 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
21309367 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
66 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
21309432 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCGCCCCGGCCCC
131 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCC
*
21309497 CCCGATC-TCTGGAACCCCAATGCCGCCGGTCAGGTTCT----C--TG----G-TGATCGTGCCC
195 CCCGATCGTC-GGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCC
* * *
21309550 CGACGAAGAAAAATACGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGCATCCCTCGGTC
258 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
21309615 TGATCCGATCTTAGACTGGG
323 CGGTTCGATCTTAGACTGGG
21309635 GATCGGTCGG
Statistics
Matches: 7922, Mismatches: 1020, Indels: 633
0.83 0.11 0.07
Matches are distributed among these distances:
845 50 0.01
846 2 0.00
847 1 0.00
849 2 0.00
852 1 0.00
853 1 0.00
854 1 0.00
856 1 0.00
860 2 0.00
861 155 0.02
862 562 0.07
863 161 0.02
864 54 0.01
865 1 0.00
866 1 0.00
867 1 0.00
868 163 0.02
869 1 0.00
870 265 0.03
871 59 0.01
872 3 0.00
873 3 0.00
874 138 0.02
875 3 0.00
876 4 0.00
878 7 0.00
879 2 0.00
881 2 0.00
882 293 0.04
883 142 0.02
884 85 0.01
885 6 0.00
886 385 0.05
887 279 0.04
888 49 0.01
889 603 0.08
890 622 0.08
891 652 0.08
892 14 0.00
893 76 0.01
894 64 0.01
895 337 0.04
896 7 0.00
897 154 0.02
898 90 0.01
899 4 0.00
900 51 0.01
901 468 0.06
902 57 0.01
903 223 0.03
904 696 0.09
905 6 0.00
906 4 0.00
907 1 0.00
908 1 0.00
909 11 0.00
910 3 0.00
911 14 0.00
912 11 0.00
913 82 0.01
914 1 0.00
915 3 0.00
916 1 0.00
917 7 0.00
918 5 0.00
919 2 0.00
920 8 0.00
921 27 0.00
922 12 0.00
923 20 0.00
924 7 0.00
925 3 0.00
926 10 0.00
927 1 0.00
928 3 0.00
930 10 0.00
931 20 0.00
932 6 0.00
933 3 0.00
934 2 0.00
936 1 0.00
938 1 0.00
940 3 0.00
941 1 0.00
942 18 0.00
943 419 0.05
944 50 0.01
945 1 0.00
946 4 0.00
947 4 0.00
948 1 0.00
951 5 0.00
953 4 0.00
954 49 0.01
955 74 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
CCGATCGTCGGAACCCCAATGCCGCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGA
CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
TTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCTGGGGAT
CGATCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCGCAACCCTCGATTTGGTCTGATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGCGGGCGGACGGGCGGGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
TTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
Found at i:21301631 original size:26 final size:26
Alignment explanation
Indices: 21301602--21301654 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21301592 TTGGTCCGAT
* *
21301602 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
21301628 CTTAGACTAGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
21301654 C
1 C
21301655 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:21302545 original size:26 final size:26
Alignment explanation
Indices: 21302505--21302557 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21302495 CTGGTTCGAT
21302505 CTTAGACTAGCAATGAACTCCGTATG
1 CTTAGACTAGCAATGAACTCCGTATG
* *
21302531 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGCAATGAACTCCGTATG
21302557 C
1 C
21302558 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGCAATGAACTCCGTATG
Found at i:21305166 original size:26 final size:26
Alignment explanation
Indices: 21305137--21305189 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21305127 CTGGTCCGAT
21305137 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21305163 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21305189 C
1 C
21305190 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21305656 original size:901 final size:900
Alignment explanation
Indices: 21303376--21309634 Score: 6683
Period size: 889 Copynumber: 7.0 Consensus size: 900
21303366 CCGGTCTGAT
* * *
21303376 CTTAGACTGGGAATGAACTCCGTATGCGTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* ** * * * * * * *
21303441 CGACCAGGGGGGCGGGATGCGTAAGTCGGGGATCGATCGGGTCCCTCTTTGTGTCCTGCCGATCC
66 CGGCCAAAGGGGCAGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
21303506 TGCTGCTGCAACCCTCAGTTTGGA-ATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAG-TTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
21303570 ACCGACGAAAC--G-AGCGGGCAGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATACGCAA
195 ACCGATGAAACGAGCAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAA
*
21303632 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
21303697 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGAAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
21303762 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
390 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* * *
21303827 TGGAAAGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
455 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * ** *
21303892 AAAGTCAGCTAAAAACACGAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTGCATTTT
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
21303957 AGACACTTTAATGGCTACTGGCACCAAACCTGTAAAATCTCAAATGCTCTTTACGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
21304022 TACTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA--CATTGGCAAA
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA-TCGCACA
* * * * * * **
21304085 TCACGTCCACACACCCCGTCCGGCCCCCCTGATCGTCGGAACCCCAATGCTGTCTCTCAGGTTCT
714 TCATGTGCGCACACCCC--CCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * * ** * * * * * *
21304150 CCGGCGATCCTTCGGCGATGGTACCCCGACGAAGAAAAATTCGTCACCAGCACATGCCCAATCCC
777 TC--CGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* *
21304215 AGCATGTGCTGCCACAA---T--G-C---T-CGGTC-----C-------G-A-TCCG-AT-
840 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
21304250 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGGGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * *
21304315 CGGTCAGAAGGGCGTCATGCGCAAGCTGAGGATGCGTAAGTCGGGGATCGA-CTGGGTCCCCCTC
66 CGGCCA-AA----G----G-G---GC--AGGATGCGCAAGTCAGGGATCGATC-GGGTCCCCCTC
* * * * * * ** *
21304379 TACGTGCTGCCAATGCTGCTGTCGCAACCCTCGGTTCGGTCCAATCTTAGACTGGGAGTGAACTC
115 TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTC
* * * *
21304444 CGTATGCCTAAGCCAACCGATGAAAC--G-AGCGGGCGGGCGGGCAGGCACTACGCTGGCCAGAG
180 CGTATGCCTAAGCCAACCGATGAAACGAGCAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAA
* * * *
21304506 ATACGGGATACGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTC
245 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*
21304571 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAA
310 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
*
21304636 GTTTCATGGAAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGAT
375 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGAT
* *
21304701 TTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTG
440 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* *
21304766 TTGGCATGCACAAAAAAAGTCAGCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAAA
505 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* *
21304831 AAGTGTCCGCATTTCAGACACTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCT
570 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * *
21304896 TTATGGGGGTGTGAGTACTCGAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCA
635 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * *
21304961 GCACCCATGGCAAATCATGTGCGCACA-CCCCCGACCCCCCCGATCGTCGGAACCCCAATACCGT
700 GCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGT
* * ** *
21305025 CGGTCAGGTTCTTCGGCGATGCTCCGATGATGGTACCCCGACGAAGAAAAATTTGGCACCTGCAC
765 CGGTCAGGTTCTTC--CGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCAC
* *
21305090 TTGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
828 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
21305155 TCCGTATG
893 TCCGTATG
* **
21305163 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCGTGTTGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * **
21305228 CGGCCAAAGGGGCAGGATGCGCAAGTCAAGGATCGATTGAATCCCCCTCTGCGTGCTGCCGATCC
66 CGGCCAAAGGGGCAGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** * * **
21305293 TACTGCCATAACCCTCAATCCGATCTGATCTTAGACAAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
21305358 TCGATGAAACGAGCAGCGGGCGGACGGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCACAAG
196 CCGATGAAACGAGCAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAG
* * * **
21305423 CCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGAAGATCTTCATATTTCTGCATGCCAATGATAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
21305488 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
326 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
21305553 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGGTCAGGATTTTTTAAAATTTTTTC
391 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
* * * * *
21305618 AGAAGGAGTTTTGGCCCCGAACTTGGTAGACATGATCCTTGTGTTTTTATTGGCATGCACAAAAA
456 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
21305683 AATTCAGCTAGAAACTTGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCT
521 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
21305747 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
586 GACACTTTAATGGCTACTGGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
21305812 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAGTATAAGGGCCAAGTACCAGCACCCATTGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
21305877 CATGTACACAAACCCCCCCGACCCCCCCGATTGCCGG-ACCCCAATGCCGTCGGTAAGG----T-
715 CATGTGCGCACA-CCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTC
* * * * *
21305936 ---TG-TCCGGTGATGGTTCCTCGATGAAGAAAAATGCGGCA-CAGCACATGCCCGAACCCAGCA
779 CGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
21305996 TGTGCTACCGCAAACCTCGATCCGATCCAATCTTAGACTGGGAATGAACTCCGTATG
844 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * ***** *
21306053 CTTAGACTAGGAATGAACTCCATATG-CTTAGACTGTGAATG-AACTTTGTATGCTTAGACTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC---G-A-GCGT-G-C-GGG
** * * * * *
21306116 AATAAACTCTGTATGCCTAAGTCAACCCACGGAAGGAGCGCGCGGGCACT-CAGCAGGCCAGAGG
58 --------C-----G-C----TCAACCGGC-CAA--AG-GGGCAGG-A-TGC-GCAAGTC--A-G
** * **** *** ** * * * ** * * ** *
21306180 GGAGAGAT-GAGAAAGCCAGGGATTGAT-CAGGTCCCCCT-CTGCATGCTGTCTA-TTCTGCTAC
95 GGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCA-ACCCTC-AGTTC-GAT-C
* ** * * * * ** * * * * * * * * *
21306241 TGCAACCCTCGGTCCGGTCCAATTTTAGACTGGGAATGAACTCAG-TATGCC--T-AAGCCAACC
156 TG--A-TCTTAGACTGG--GAA--TGA-ACTCCGTATG-CCTAAGCCA-ACCGATGAAACGAGCA
** * * *
21306302 GACGAAAC-GAGCGGGCGGGCAGGCGGACGGGCACTACATCGGCCAGAGAGACAGGATGCGCAAG
211 G-CG-GGCGGA-CGGGCGGGCA--C-TAC--G-----C--CGGCCAGAAAGACGGGATGCGCAAG
* * * * *
21306366 CCATCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATTCCAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
21306431 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
326 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
21306496 ACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTATGGTT-TGAGATTTTTTAAAATTTTTA
391 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTT
*
21306560 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTGGCATGCACAAAA
455 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * * *
21306625 AAAGTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGGCAATTTGAAAAAAGTGTCCGCATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
21306690 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
21306755 TTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * * * * * *
21306820 CATGTGCGCACACCCCCCCACCCCCTTGATCGCCGGAACCCTAATGCCGGCGATCAAGTTCTCCC
715 CATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT-TC
* ** *
21306885 GCGATGCTCC-AGCGATGGTGCCCC-AGTGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCA
779 -CGATGCTCCGA-TGATGGTGCCCCGA-TGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
*
21306948 GCATGTGCTGCCGC-ACCCATCAGT-TCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
841 GCATGTGCTGCCGCAACCC-TCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
21307008 CTTAGACT-AGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * *
21307072 CGGCTAGAA-GGGCGGGATGCGCAAGT-AGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCAAT
66 CGGCCA-AAGGGGCAGGATGCGCAAGTCA-GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGAT
** * * * **
21307135 CCTGCTATCGTAACCCT-AGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* ** * * ** *
21307199 AACCGATGAAAC--G-AGTGGGCGGGTGGGCAGGCACTACGCCGGCCAAAAAGATAGGACGCGCA
194 AACCGATGAAACGAGCAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCA
* *** *
21307261 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTATGTGCCAAAGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
21307326 ATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
21307391 CGACTC--GTTC------TC-T-ATTTTT----C-----AC---T----A-TTTTTAAAACTTTT
389 CGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAA-TTTT
* * * * *
21307429 TT-GGAAGGAGTTTTGGCCTCAAACTTGGTGGACGTAATCCCTGTATTTTTTTTGGCATGCACAA
453 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
21307493 AAATATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
21307558 TCAGACGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
21307623 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
21307688 ATCGTGTGCG--CA-----C-ACCCCCCCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTT
713 ATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTT
* * * * * * *
21307745 CGACGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATACGACACCAACATATGCTCGAGCCCA
778 C--CGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
* * ** * * * * *
21307810 ACATGTGCTGTCGCAACCCAT-GGTCCAGTCTGATCTTTGACTGGGAATGATCTTCATATG
841 GCATGTGCTGCCGCAACCC-TCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * ** * *
21307870 CTTAGACTGGGAATGAACTCCATATGCTTAAGTGAACCCACGAAATGAATGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* ** * * * * * * ** * **
21307935 CGACCAGCGAGGTAGGATGCACAAGTCGGGGATCGGTCGGGTCCTCGACTGCATGCTGTAGATCC
66 CGGCCAAAGGGGCAGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
21308000 TGCGGCTGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
21308065 CCGACGAAATGAGCATGCGGGTGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
196 CCGATGAAACGAGCA-GCGGGCGGACGGGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAA
* ** *
21308130 GTCGTGGATCGATAGGGTGGTAGGTGATTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* *
21308195 TTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAT
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** * *
21308260 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTT
390 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* * * *
21308325 GGGAAAGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTCTGTTGGCATGCACAAAA
455 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
21308390 CAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCGATTTC
520 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
21308455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAG
585 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
21308519 TTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAA-GGCCAGGTACCAGCACCCATCGCACAT
650 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** *
21308583 CATGTGCGCACACCGCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCACCAGTCAGGTTC-TC
715 CATGTGCGCACACC-CCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTC
21308646 C---G----G-TGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
779 CGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
21308703 TGTGCTGCCGCAACCCTCGGTCTAGTTCGATCTTAGACAGAGAATGAACTTCGTGTG
844 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
21308760 CTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
* * * * ** * * * *
21308825 CGGCCAGAGGGGCACGATGCGCAAGCCAGGGATTGGCCAGGTCCCCTTCTACGTGCTACCGATCC
66 CGGCCAAAGGGGCAGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
** ** ** * * *
21308890 TGCAACCATAACCCTTGGTCCGATCCGATCTTAGACTAGGAATGAACT-CGATATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCG-TATGCCTAAGCCA
* * * *
21308954 ACTGATGAATCGAGCGGAC-GG-GG--GGGCGGGCACTATGCCGGCCA-AAGAGACGGGATGCGC
195 ACCGATGAAACGAGCAG-CGGGCGGACGGGCGGGCACTACGCCGGCCAGAA-AGACGGGATGCGC
* *
21309014 AAGCCGTGGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCATTGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
21309079 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTAATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * *
21309144 ATGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
388 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTT
* * * * * * * *
21309209 TTTGGAAGGAGCTCTGGACCCAAACTTTGTAGACGTGAGCCCTGTATTTTTGTTGGCATGCAAAA
453 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
21309274 AAAAATTCAGGTAAAAACTCGTAGTGTACAAGATTTTGTTACCATTTGAGAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
21309339 TCAGACACTTTAATGGCTACTCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
21309404 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAT
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
21309469 ATCATGTGCGCACACCCGCCCCGGCCCCCCCGATC-TCTGGAACCCCAATGCCGCCGGTCAGGTT
713 ATCATGTGCGCACA-CC-CCCCGACCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTT
* * * *
21309533 C-T-C--TG----G-TGATCGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCAAGCCC
775 CTTCCGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
* *
21309589 AGCATGTGCTGCCGCATCCCTCGGTCTGATCCGATCTTAGACTGGG
840 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
21309635 GATCGGTCGG
Statistics
Matches: 4550, Mismatches: 625, Indels: 404
0.82 0.11 0.07
Matches are distributed among these distances:
861 1 0.00
862 138 0.03
863 109 0.02
864 53 0.01
866 1 0.00
867 1 0.00
868 163 0.04
870 261 0.06
871 6 0.00
874 66 0.01
875 1 0.00
876 2 0.00
878 6 0.00
879 1 0.00
882 1 0.00
883 2 0.00
884 1 0.00
885 1 0.00
886 380 0.08
887 163 0.04
888 47 0.01
889 612 0.13
890 491 0.11
891 34 0.01
892 4 0.00
893 37 0.01
894 54 0.01
895 181 0.04
896 3 0.00
897 151 0.03
898 105 0.02
899 1 0.00
900 53 0.01
901 463 0.10
902 20 0.00
903 22 0.00
904 3 0.00
906 2 0.00
907 1 0.00
908 1 0.00
909 11 0.00
910 4 0.00
911 11 0.00
912 12 0.00
913 66 0.01
914 10 0.00
915 4 0.00
917 8 0.00
918 6 0.00
919 2 0.00
920 9 0.00
921 24 0.01
922 22 0.00
923 17 0.00
924 7 0.00
925 3 0.00
926 11 0.00
928 3 0.00
929 7 0.00
930 14 0.00
931 19 0.00
932 5 0.00
933 1 0.00
934 3 0.00
935 1 0.00
936 1 0.00
940 1 0.00
942 21 0.00
943 414 0.09
944 49 0.01
948 3 0.00
949 1 0.00
951 3 0.00
952 1 0.00
953 4 0.00
954 46 0.01
955 81 0.02
956 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
CGGCCAAAGGGGCAGGATGCGCAAGTCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCAGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAACGAGCAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAAAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCCG
ATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:21306056 original size:26 final size:26
Alignment explanation
Indices: 21306027--21306131 Score: 147
Period size: 26 Copynumber: 4.0 Consensus size: 26
21306017 CCGATCCAAT
21306027 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21306053 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
* **
21306079 CTTAGACTGTGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21306105 CTTAGACTGGGAATAAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21306131 C
1 C
21306132 CTAAGTCAAC
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 69 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21307024 original size:25 final size:26
Alignment explanation
Indices: 21306982--21307033 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
21306972 TCGGTCCGAT
*
21306982 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
21307008 CTTAGACT-AGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
21307033 C
1 C
21307034 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:21307884 original size:26 final size:26
Alignment explanation
Indices: 21307848--21307899 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21307838 TCTGATCTTT
* *
21307848 GACTGGGAATGATCTTCATATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
21307874 GACTGGGAATGAACTCCATATGCTTA
1 GACTGGGAATGAACTCCATATGCTTA
21307900 AGTGAACCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
GACTGGGAATGAACTCCATATGCTTA
Found at i:21309157 original size:886 final size:889
Alignment explanation
Indices: 21307415--21309630 Score: 3012
Period size: 886 Copynumber: 2.5 Consensus size: 889
21307405 TTTTTCACTA
* * * *
21307415 TTTTTAAAACTTTTTTGGAAGGAGTTTTGGCCTCAAACTTGGTGGACGTAATCCCTGTATTTTTT
1 TTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTG
* *
21307480 TTGGCATGCACAAAAATATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
65 TTGGCATGCACAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAA
* *
21307545 AAGTGTCCCCATTTCAGACGCTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCT
128 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
21307610 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
193 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * *
21307675 GCACCCATCGCACATCGTGTGCGCACA------C--CCCCCCGATCGCCAGAACCCCAATGCCGT
258 GCACCCATCGCACATCATGTGCGCACACCGCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGC
* * * *
21307732 CGGTCAGGTTCTTCGACGATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATACGACACCAACAT
323 CGGTCAGGTTC-TC--CG--G-T-----GATGGTGCCCCGATGAAGAAAAATACGGCACCAACAC
* * * * * * *
21307797 ATGCTCGAGCCCAACATGTGCTGTCGCAACCCAT-GGTCCAG-TCTGATCTTTGACTGGGAATGA
377 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCC-TCGGTCTAGTTC-GATCTTAGACAGAGAATGA
* * * * *
21307860 TCTTCATATGCTTAGACTGGGAATGAACTCCATATGCTTAAGTGAACCCACGAAATGAATGTGCG
440 ACTTCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAACGTGCG
* * * * * * * * * * *
21307925 GGTGCTCAGCCGACCAGCGAGGTAGGATGCACAAGTCGGGGATCGGTCGGGTCCTCGACTGCATG
505 GGCGCTCAACCGACCAGAGAGGCACGATGCACAAGCCAGGGATCGGCCAGGTCCCCGACTACATG
** ** ** * * * *
21307990 CTGTAGATCCTGCGGCTGCAACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
570 CTACAGATCCTGCAACCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATG
** *
21308055 CCTAAGCCAACCGACGAAATGAGCATGCGGGTGGGCGGGCGGGCACTACGCCGACCAGAGAGACG
635 CCTAAGCCAACCGACGAAATGAGCATGCGGACGGGCGGGCGGGCACTACGCCGACCAAAGAGACG
* * * *
21308120 GGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGATTTTGGGCACATCTTCATATTTCTGCAT
700 GGATGCGCAAGCCGTGGATCCATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCAT
* *
21308185 GCCAATGCCATTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
765 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTA
21308250 ATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGAT
830 ATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGAT
* * * *
21308310 TTTTTAAAATTTTTTGGGAAAGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTCTG
1 TTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTG
*
21308375 TTGGCATGCACAAAACAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAATA
65 TTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA-A
*
21308440 AAGTGTCCCGATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
128 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* *
21308505 TTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATAA-GGCCAGGTACCA
193 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
*
21308568 GCACCCATCGCACATCATGTGCGCACACCGCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCAC
258 GCACCCATCGCACATCATGTGCGCACACCGCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGC
* *
21308633 CAGTCAGGTTCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
323 CGGTCAGGTTCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCCGAGCC
* *
21308698 CAGCATGTGCTGCCGCAACCCTCGGTCTAGTTCGATCTTAGACAGAGAATGAACTTCGTGTGCTT
388 CAGCATGTGCTGCCGCAACCCTCGGTCTAGTTCGATCTTAGACAGAGAATGAACTTCATATGCTT
* * * * *
21308763 AGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGG
453 AGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAACCGA
* * * ** * *
21308828 CCAGAGGGGCACGATGCGCAAGCCAGGGATTGGCCAGGTCCCCTTCTACGTGCTACCGATCCTGC
518 CCAGAGAGGCACGATGCACAAGCCAGGGATCGGCCAGGTCCCCGACTACATGCTACAGATCCTGC
* * *
21308893 AACCATAACCCTTGGTCCGATCCGATCTTAGACTAGGAATGAACT-CGATATGCCTAAGCCAACT
583 AACCACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCG-TATGCCTAAGCCAACC
* * * * *
21308957 GATG-AAT-CG-A-GCGGACGGGGGGGCGGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGC
647 GACGAAATGAGCATGCGGACGGGCGGGCGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGC
* *
21309018 CGTGGATCCATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCATTGCCATT
712 CGTGGATCCATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
21309083 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTAATGGCAAGATGA
777 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGA
* ** *
21309148 CTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGAT
842 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGAT
* * * * *
21309196 TTTTTAAAATTTTTTTGGAAGGAGCTCTGGACCCAAACTTTGTAGACGTGAGCCCTGTATTTTTG
1 TTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTG
* * * *
21309261 TTGGCATGCAAAAAAAAATTCAGGTAAAAACTCGTAGTGTACAAGATTTTGTTACCATTTGAGAA
65 TTGGCATGC-ACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AA
*
21309326 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTCGCAGCAAACCTGTAAAATCTCAAATGCTCT
128 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
*
21309391 TTAAGGGGGCGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
193 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
*
21309456 GCACCCATCGCATATCATGTGCGCACACCCGCCCCGGCCCCCCCGATC-TCTGGAACCCCAATGC
258 GCACCCATCGCACATCATGTGCGCACA-CCGCCCCGG-CCCCCCGATCGTC-GGAACCCCAATGC
* * * *
21309520 CGCCGGTCAGGTTCTCTGGTGATCGTGCCCCGACGAAGAAAAATACGGCACCAACACATGCCCAA
320 CGCCGGTCAGGTTCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCCGA
* *
21309585 GCCCAGCATGTGCTGCCGCATCCCTCGGTCT-GATCCGATCTTAGAC
385 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTAG-TTCGATCTTAGAC
21309631 TGGGGATCGG
Statistics
Matches: 1171, Mismatches: 127, Indels: 51
0.87 0.09 0.04
Matches are distributed among these distances:
886 378 0.32
887 58 0.05
888 38 0.03
889 18 0.02
890 370 0.32
891 2 0.00
893 37 0.03
894 54 0.05
895 174 0.15
896 2 0.00
898 2 0.00
899 1 0.00
900 2 0.00
901 35 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (889 bp):
TTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGT
TGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCGCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
TCAGGTTCTCCGGTGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATGCCCGAGCCCAG
CATGTGCTGCCGCAACCCTCGGTCTAGTTCGATCTTAGACAGAGAATGAACTTCATATGCTTAGA
CTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAACCGACCA
GAGAGGCACGATGCACAAGCCAGGGATCGGCCAGGTCCCCGACTACATGCTACAGATCCTGCAAC
CACAACCCTCGGTCCGATCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAATGAGCATGCGGACGGGCGGGCGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTG
GATCCATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTCG
TTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGAT
Found at i:21310434 original size:26 final size:26
Alignment explanation
Indices: 21310398--21310450 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21310388 CTGGTCCGAT
*
21310398 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21310424 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21310450 C
1 C
21310451 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21311337 original size:26 final size:26
Alignment explanation
Indices: 21311301--21311353 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21311291 CCGGTCCGAT
* *
21311301 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21311327 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21311353 C
1 C
21311354 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21313244 original size:26 final size:26
Alignment explanation
Indices: 21313204--21313254 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21313194 AGTCCGATGT
* *
21313204 TAGACTGGGATTGAACTCTGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
21313230 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
21313255 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:21314423 original size:26 final size:26
Alignment explanation
Indices: 21314394--21314446 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21314384 CTCGTCCGAT
*
21314394 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21314420 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21314446 C
1 C
21314447 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21316247 original size:26 final size:26
Alignment explanation
Indices: 21316169--21316240 Score: 135
Period size: 26 Copynumber: 2.8 Consensus size: 26
21316159 CTGATCCGAT
21316169 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
21316195 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
21316221 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGAAATGAACTC
21316241 TGAATGCCTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 45 1.00
ACGTcount: A:0.31, C:0.19, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:21317127 original size:26 final size:26
Alignment explanation
Indices: 21317097--21317149 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21317087 CCATTCCGAT
21317097 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21317123 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21317149 C
1 C
21317150 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21317739 original size:901 final size:899
Alignment explanation
Indices: 21313614--21319443 Score: 7627
Period size: 901 Copynumber: 6.5 Consensus size: 899
21313604 ATCTTAGACT
* ** * * **
21313614 GGGGATCGGT-GGGTCCCCCTCTGCGTGCTACCGATCCTACTGTCGTAACCCTCAGT-TGGTCTG
1 GGGGATCGGTCGGGT-CCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCA
*
21313677 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA-ACGAGCGGGAGGGCGGG
65 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGACGGGCGGGAGGGCGGG
** ** * *
21313740 CGGGCACTACATCGATCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGATGGTAGGTGGGT
130 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
21313805 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACATTGC
195 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* **
21313870 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTATTTTCTATTTTTCACGATTTTTG
260 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* *
21313935 AAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC-AGAAGGATTTTTTGCCCCAAACTTGGT
325 AAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGT
*
21313999 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACA
389 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
21314064 AGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAA
454 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAA
21314129 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
519 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
*
21314194 CCAATATAAGGGCCAAGTACCCA-TACCCATCGCACATCAAT-TGCGCACACCCCCCCGGCCCCC
584 CCAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATC-ATGTGCGCACA-CCCCCCGGCCCCC
* * * * * *
21314257 GCGATCGCCAGATCCCGAACGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCG
646 -CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
* * *
21314322 GCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTACTGCTGCAACCCTCGATCTC
710 GCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-C
*
21314387 -GTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
774 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
21314451 GTCAACCCACGAAACGAGCGTGCGGGCCCTCAACAGGCCAGAGGGGCGGGATGCGTAAGCT
839 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * *
21314512 GGGGATCGGCCGTGTCCCCCTCTGCGTGCTTCCGATCCTGCTGCCGCAACCCTTGGTCCGGTCCG
1 GGGGATCGGTCGGGT-CCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCA
* *
21314577 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGAACGGGC--G-GGGCG
65 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-G-ACGGGCGGGAGGGCG
* * * * * *
21314639 GACGGGCACTACGCCAGCCGGAGAGACGGGATGAGCAAGCCGTGGATCGATAGGGTGGTTGGTGA
128 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
21314704 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
193 GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
21314769 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
258 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* ** *
21314834 AGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTC-AGAAGGCGTTTTGGCCCCAAACTTG
323 TGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTG
* * * * *
21314898 GTACACGTGATCCTTGTAATTTTGTTCGCAGGCACAAAAAAATTCAGCAAAAAACTCGAAGTGTA
387 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
21314963 CAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTAAGACACTTTAATGGCTACTGGCAGCA
452 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACA
21315027 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
517 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
*
21315092 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCC
582 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * *
21315157 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCAGC
647 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGC
* * * * * * * *
21315222 CAAGAAAAATACGGCTCCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCGACCCTTGGTCTGGT
712 GAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * *
21315287 CTGATCTTCGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTT
777 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
21315352 AACCCATGAAACGAGCTTGCGGGCGCTCAGCCGGCCAGAGAGGCGGGATACGCAAGCT
842 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * ** * * *
21315410 GGGGATCTGTCGGGTCCCC-CT-C-TG----C-A---TGCTACCACAACCCTCACTCCGATCTAA
1 GGGGATCGGTCGGGTCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCAA
* * * * *
21315464 TCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA-ACGAGCGAGCGGGCGGGT
66 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGACGGGCGGGAGGGCGGGC
*
21315527 GGGCACTACGCCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
131 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
21315592 TAGGGACATCTTCATATTTCTGTGTGCCAATGCCGTTTTTATGGCTTGTAAATTCATACAATGGT
196 TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *** **
21315657 CCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGATGACTCGTTTTCTATTTTTGGTGATTTTCAA
261 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
21315722 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTG-GAGGACGTTTTGGCCCCAAACTTGGTA
326 AACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGA-GTTTTGGCCCCAAACTTGGTA
* * * *
21315786 GACATTATCCTTGTATTTTTGTTGTCATGCACAAAAAAATTCAGCTAAAAGCTCGAAGTGTACAA
390 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * ** *
21315851 GATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTTAGACACTTTAATGAATACTGGCAGCAAAC
455 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAAC
* * *
21315916 CTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGC
520 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
* *
21315981 CAATATAAGGGCCAAGTACCCA-CACCCATCGTACATCATGTGCGCACACCCCCCCGGGCCCCCT
585 CAATATAAGGGCCAAGTA-CCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCC
* * * * *
21316045 GATCATCGGAACCCTAATGCCGTCGATCAGG-T-T----C--T--T-CGACGATGGTGCCCGGGC
647 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGC
* * ** * * *
21316099 AAAGAAATATGCGAG-ACCAGCACATGGGCATGCCCAGCATGTACTGCCGTAACCCTTGGTCTGA
712 GAAGAAAAATGCG-GCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCC----TC-G-
*
21316163 TCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCTTAGAC
770 ---G-TC-----C--G----G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * **
21316228 TGGGAATGAACTCTGAATGCCTAAGTCAACCCATACAAAACGAGCGTGTGGGCGCTCCGTTGGCC
815 TGGGAATGAACTCCGTATGCCTAAGTCAACCC--ACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* *
21316293 AAAGGGGTGGGATGCGCAAGCC
878 AGAGGGGCGGGATGCGCAAGCC
* * * * * *
21316315 GGGGATCGGTCGAGTCCCCTCTACGTGCTGCTGATCCTACTACCGTAACCCTCGGTCTGGTCCAA
1 GGGGATCGGTCGGGTCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCAA
* * * *
21316380 TCATAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCGACGAAACGAGCGGGCGGGCGGGTGG
66 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GA-CGGGCGGGAGGGCGG
* * * *
21316445 GTGGGCACTACGCCGACCAAAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
129 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
21316510 TTTAGGCACACCTTCATATATCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATGCAAT-
194 TTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
21316574 GTCCCTTAAGCCTTCATGTGAAGTTTCCTGGCAACACGACTCGTTTTCTATTTTTCATGATTTTT
259 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* **
21316639 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC-AGTTGGAGTTTTGGCCCCAAACTTGG
324 GAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGG
* * * *
21316703 TAGACATGATCATTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAATTGTAC
388 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
21316768 AAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTAGCAACAA
453 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAA
* * * *
21316833 ACCTGTAAAATCTCAAACGCTCTTTAAGGAGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGG
518 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* *
21316898 ACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGC-CACACCCCCCGGCCCCTCC
583 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CC
* * * *
21316962 GATCATCGGAACCCCATTGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCTCGGC
647 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGC
* * * **
21317027 GAAGAGAAATGCGGCACCAGCACATGCCTAAGCCCAACATGTGCTGCCGCAACCCTCGGTCCATT
712 GAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
*
21317092 CCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
777 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
21317157 AACCCACGAAACGAGCGTACAGGCGCTCAGCCGGCGAAAGAGGTGGGATGCGTAAGCC
842 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * *
21317215 GAGGATCGGTTGGGTCCCCTCTGCGTGCTACCGATGCT-CTTACCGCAACCCTCGGTCTGATCCA
1 GGGGATCGGTCGGGTCCCCTCTGCGTGCTACCGATCCTGC-TACCGCAACCCTCGGTCTGGTCCA
*
21317279 ATCTTAGACTGGGAATGAACTCCGTATACCTACA-CCAACCGACGAAATGAGCGGGCGGGAGGGC
65 ATCTTAGACTGGGAATGAACTCCGTATGCCTA-AGCCAACCGACGAAA-GA-CGGGCGGGAGGGC
* * * * *
21317343 GGGCGGGCACTATGCCGGACAGAGAGACTGGATGTGCAAGCCGTGGATCGATTGGGTGGTAGGTG
127 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
21317408 GGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAG
192 GGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
21317473 TGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCT-TTTTTGCACGATT
257 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT-CACGATT
* * * *
21317537 TTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTCTCGAAAGGATTTTTGGCCCCAAACTT
321 TTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* * * *
21317602 GGTGGATGTGACCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
386 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
21317667 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAC
451 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAC
*
21317732 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGTATAGG
516 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
** * *
21317797 GGGCCAATATAAGGGGTAAGTACCAGCACCTATAGCACATCATGTGCGCACACCCCCCGGCCCCC
581 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCC
* * *
21317862 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCACCGGCGATGGTGCCCCG
645 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
** * * * ** * *
21317927 ATGAAGAAAATTGTGGCACCAGCACATGTCTGAGCCTAGCATGTGCTGCCGCAACCCTTGGTCCG
710 GCGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
** ** *
21317992 GTCCGATCTTAGACTGGGAATGAACTATGTATGCTTAGACTGGGAATGAACTCTATTTGCCTAAG
775 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * *
21318057 TCAACCCACGAAACGAGAATGCGGGTGCTCAGCCGGCCATAGGGGCGGGATGCGCAAGTC
840 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * ** *
21318117 GGGGATCAGTCGGGTCACACTCTGCGTGCTACCGATCCTGCTACCACAACCCTTAGTTTGGTCCA
1 GGGGATCGGTCGGGTC-CCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCA
*
21318182 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-ACGAGC--GA--GCGGG
65 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGACGGGCGGGAGGGCGGG
* * *
21318241 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATTGATAGGGTGGCAGGTGGGT
130 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
21318306 TTAGACACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
195 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
21318371 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTC-TTTCTCTATTTTTCACGATTTTT
260 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT-TCTATTTTTCACGATTTTT
* * * * *
21318435 GAAACTTTTTGCTGTTCT-AGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGGCCCCAAACTTGG
324 GAAACTTTTTGCGGTT-TGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGG
*
21318499 TAGACGTGATCCTTGTATTTTT-TCGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
388 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
21318563 AAGATTATGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
453 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAA
* *
21318628 ACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
518 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
* *
21318693 GCAAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--------CCCCCCG
583 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* * * * *
21318750 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGACGCTCCGACGATGCTACCCCGACG
648 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCG
* *
21318815 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTC
713 AAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * *
21318880 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATTCCTAAGTCA
778 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
*
21318945 ACCCACGAAACGAGCGTGCGGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTC
843 ACCCACGAAACGAGCGTGC-GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * ** * ** * *
21319003 GAGGATCGG-CTGGGTCCCACTCTACGTGCTGTCGATCTTGCTGTCGCACCCCTTGGT-TCGGTC
1 GGGGATCGGTC-GGGTCCC-CTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCT-GGTC
* * * * *
21319066 CAATCTTAGACTGGGAATGAACTCTGTATGCCCAATCCAACTGACGAAATGAGCGGGCGGGCGGG
63 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GA-CGGGCGGGAGGG
** * * *
21319131 CGGGTAGGCACTGCACCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGT
126 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** * * *
21319196 GGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGTTTGTGAATTCCTACA
191 GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
21319261 ACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTA-TCGTTTTTTATTTTTCAGGAT
256 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG-ACTCGTTTTCTATTTTTCACGAT
** * * * * *
21319325 TTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAGAAGTTTTGGCACCAAACT
320 TTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * *
21319389 TGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCATAAAAAAATTCGGCTAAAA
385 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
21319444 TCTCCGTATG
Statistics
Matches: 4333, Mismatches: 492, Indels: 218
0.86 0.10 0.04
Matches are distributed among these distances:
877 57 0.01
878 2 0.00
880 1 0.00
881 1 0.00
882 6 0.00
884 4 0.00
885 521 0.12
886 323 0.07
887 14 0.00
888 33 0.01
889 2 0.00
890 5 0.00
892 1 0.00
893 45 0.01
894 445 0.10
895 256 0.06
896 8 0.00
897 6 0.00
898 244 0.06
899 61 0.01
900 459 0.11
901 664 0.15
902 314 0.07
903 145 0.03
904 10 0.00
905 58 0.01
906 2 0.00
907 1 0.00
908 2 0.00
913 2 0.00
916 65 0.02
917 37 0.01
918 10 0.00
919 329 0.08
920 135 0.03
923 2 0.00
924 2 0.00
925 1 0.00
927 2 0.00
928 58 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
GGGGATCGGTCGGGTCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTCTGGTCCAA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGACGGGCGGGAGGGCGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAG
AAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
Found at i:21319739 original size:26 final size:26
Alignment explanation
Indices: 21319710--21319762 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21319700 CCGGTCCAAT
* *
21319710 CTTACACTGGGAATGAACTCCGTATG
1 CTTACAATAGGAATGAACTCCGTATG
*
21319736 CTTAGAATAGGAATGAACTCCGTATG
1 CTTACAATAGGAATGAACTCCGTATG
21319762 C
1 C
21319763 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACAATAGGAATGAACTCCGTATG
Found at i:21320241 original size:825 final size:819
Alignment explanation
Indices: 21318652--21320268 Score: 2424
Period size: 825 Copynumber: 2.0 Consensus size: 819
21318642 AAATGCTCTT
*
21318652 TAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAAGGCCAAGTACCAG
1 TAAGGTGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCAAATATAAAGGCCAAGTACCAG
21318717 CACCCATCGCACATCATGTGCGCACACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
66 CACCCATCGCACATCATGTGCGCACACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
*
21318782 CTCCGACGACGCTCCGACGATGCTACCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
131 CTCCGACGACGCTCCGACGATGCTACCCCGACGAAGAAAAATACGG--CCAGCACATGCCCGAGC
* ** *
21318847 CCAGCATGTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCT
194 CCAGCATGTGCTACCACAACCCTCGGTCCGGTCCAATCTTACACTGGGAATGAACTCCATATGCT
* * *
21318912 TAGACTGGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAACGAGCGTGCGGGGCGCTCAGCC
259 TAGAATAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGCGCTCAGCC
* * * * *
21318977 GGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGCTGGGTCCCACTCTACGTGCTGTCGATCTT
324 GACCAGAGGGGCGGGATGCGCAAGCCGAGGATCAGCTGGGTCCCACTCTACGTGCTGCCGATCCT
* * * * * *
21319042 GCTGTCGCACCCCTTGGTTCGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCCAATCCAAC
389 GCTGTCGCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCCAAGCCAAC
* * * * *
21319107 TGACGAAATGAGCGGGCGGGCGGGCGGGTAGGCACTGCACCGGCCAGAGAGACGGGATGCGCAAG
454 CGACGAAATGAGCGGGCGGGCAGACGGGCAGGCACTGCACCGGCCAAAGAGACGGGATGCGCAAG
*
21319172 TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCAT
519 TCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * *
21319237 TTTTATGGTTTGTGAATTCCTACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
584 TTTTATGGTTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACG
* * *
21319302 TATCGTTTTTTATTTTTCAGGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTG
649 TATCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTACGGTTCGGGATTTGTTAAAATTTTTTA
*
21319367 GAAGAAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCATAAAAAA
714 GAAGAAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAA
*
21319432 ATTCGGCTAAAATCTCCGTATGCCTAAGCCAACCGACGAAA
779 ATTCAGCTAAAATCTCCGTATGCCTAAGCCAACCGACGAAA
* *
21319473 TAAGGTGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
1 TAAGGTGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCAAATATAAAGGCCAAGTACCAG
* * *
21319538 CGCCCATCGCACATCATGTGCGCACACCCCCCAGGCCCCA-CGATCACCGGAACCCCAATGGCGT
66 CACCCATCGCACATCATGTGCGCACACCCCCC--G----ATCG-T---CGGAACCCCAATGCCGC
* * * * * *
21319602 CGGTCAGGTTCTCC-AGCGATGCTCCGGCGATGGTGCCCCGACGATGAAAAATATGG-CA-CACA
121 CGGTCAGGTTCTCCGA-CGACGCTCCGACGATGCTACCCCGACGAAGAAAAATACGGCCAGCACA
*
21319664 TGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCAATCTTACACTGGGAATGAACT
185 TGCCCGAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTCCAATCTTACACTGGGAATGAACT
* *
21319729 CCGTATGCTTAGAATAGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGC-GGG
250 CCATATGCTTAGAATAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGG
* * * * * *
21319793 CGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTTTGGTCCCCCTCTGCGTGTT
315 CGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCAGCTGGGTCCCACTCTACGTGCT
*
21319858 GCCGATCCTGCTG-CTGCAACCCTTGGTCCATTCCAATCTTAGACTGGGAATAAACTCCGTATGC
380 GCCGATCCTGCTGTC-GCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATAAACTCCGTATGC
* * * *
21319922 CTAAGCCAACCGACGAAATGAGCGGGCGGGCAGACGGGCGGGCACTTCGCCGGCCAAAGAGACGG
444 CCAAGCCAACCGACGAAATGAGCGGGCGGGCAGACGGGCAGGCACTGCACCGGCCAAAGAGACGG
21319987 GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
509 GATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
** *
21320052 CCAATGCCATTTTTATGGTTTGTAAATTCATACATTGGTCCCTTAAGCCTTCATGTGAAGTTTCA
574 CCAATGCCATTTTTATGGTTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * *
21320117 TGCCAAGACG-ACTCGTTTTTTATTTTTTAAGATTTTCAAAACTTTTTGCGGTTTGGGATTTGTT
639 TGCCAAGACGTA-TCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTACGGTTCGGGATTTGTT
*
21320181 AAAATTTTTTCAGAAGGAGTTTTGGTC-CCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTGG
703 AAAATTTTTT-AGAAGAAGTTTTGG-CACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
21320244 CGTGCACAAAAAAATTCAGCTAAAA
766 CGTGCACAAAAAAATTCAGCTAAAA
21320269 ACTCGAAGTA
Statistics
Matches: 715, Mismatches: 66, Indels: 26
0.89 0.08 0.03
Matches are distributed among these distances:
821 93 0.13
823 1 0.00
824 2 0.00
825 390 0.55
826 161 0.23
827 5 0.01
829 1 0.00
830 62 0.09
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (819 bp):
TAAGGTGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCAAATATAAAGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
CTCCGACGACGCTCCGACGATGCTACCCCGACGAAGAAAAATACGGCCAGCACATGCCCGAGCCC
AGCATGTGCTACCACAACCCTCGGTCCGGTCCAATCTTACACTGGGAATGAACTCCATATGCTTA
GAATAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGCGCTCAGCCGA
CCAGAGGGGCGGGATGCGCAAGCCGAGGATCAGCTGGGTCCCACTCTACGTGCTGCCGATCCTGC
TGTCGCAACCCTTGGTCCAGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCCAAGCCAACCG
ACGAAATGAGCGGGCGGGCAGACGGGCAGGCACTGCACCGGCCAAAGAGACGGGATGCGCAAGTC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGTTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGTA
TCGTTTTTTATTTTTCAAGATTTTCAAAACTTTTTACGGTTCGGGATTTGTTAAAATTTTTTAGA
AGAAGTTTTGGCACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAAT
TCAGCTAAAATCTCCGTATGCCTAAGCCAACCGACGAAA
Found at i:21320662 original size:26 final size:26
Alignment explanation
Indices: 21320611--21320663 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21320601 CCGGTCCGAT
* * *
21320611 CTTAGACTGTGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21320637 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21320663 C
1 C
21320664 CTAAGTCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21321558 original size:26 final size:26
Alignment explanation
Indices: 21321506--21321558 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21321496 CCGATCTGAT
* * *
21321506 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGCATG
*
21321532 CTTAGACTAGGAATGAACTCTGCATG
1 CTTAGACTAGGAATGAACTCCGCATG
21321558 C
1 C
21321559 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGCATG
Found at i:21321750 original size:895 final size:897
Alignment explanation
Indices: 21319473--21329074 Score: 12962
Period size: 895 Copynumber: 10.7 Consensus size: 897
21319463 ACCGACGAAA
* *
21319473 TAAGGTGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * ** * *
21319538 CGCCCATCGCACATCATGTGCGCACACCCCCCAGGCCCCACGATCACCGGAACCCCAATGGCGTC
66 CACCCATCGCACATCATGTGCG-ACACCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCC
* * * * **
21319603 GGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGACGATGAAAAATATGG---CA-CACA
129 GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
* ** *
21319664 TGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCAATCTTACACTGGGAATGAACT
194 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
* * *
21319729 CCGTATGCTTAGAATAGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGCGGGC
259 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * *** *
21319794 GCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGTTTGGTCCCCCTCTGCGTGTTG
324 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG
* * * * *
21319859 CCGATCCTGCTGCTGCAACCCTTGGTCC-ATTCCAATCTTAGACTGGGAATAAACTCCGTATGCC
389 CCGATCCTGCTGCCGCAACCCTTGATCCGGTT-CGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
21319923 TAAGCCAACCGACGAAATGAGCGGGCGGGCAGACGGGCGGGCACTTCGCCGGCCAAAGAGACGGG
453 TAAGCCAACCGACGAAACGAGCAGGC-GG--G-CGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * *
21319988 ATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
514 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
* * *
21320053 CAATGCCATTTTTATGGTTTGTAAATTCATACATTGGTCCCTTAAGCCTTCATGTGAAGTTTCAT
579 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * * ** *
21320118 GCCAAGACGACTCGTTTTTTATTTTTTAAGATTTTCAAAACTTTTTGCGGTTTGGGATTTGTTAA
644 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAA
* * *
21320183 AATTTTTTCAGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCGT
709 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
21320247 GCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTC
774 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
21320312 TCCATTTCAGACACTTTCATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
839 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
21320371 TAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
21320435 CAACCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGAACCTCAATGCCGCC
66 CACCCATCGCACATCATGTGCG-ACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCC
* *** ** * *
21320500 GGCCAGGTTCTGTAGCGATGCTCTCG-CGATGGTGCCCCTACGAAGAAAAATGTGGCACCAGCAG
129 GGTCAGGTTCTCCGGCGATGCTC-CGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
* * * * *
21320564 AT-CTTCGAGCCCAGCATGTGCTGTCGCAACCCTCTGTCCGGTCCGATCTTAGACTGTGAATGAA
193 ATGC-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
* * * * *
21320628 CTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAGCCATGAAACGAGAGTGCGG
257 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * ** *
21320693 GCGCTCAGCTGGCCAGAGGGGCGGGATGCACAAGCCGAGGATTAGCCGGGTCCTCCTCTGCGTGC
322 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGC
* ** * * ** * *
21320758 TGCCGATCCTACTATCGTAACCCTCGATTTGGTCCGATCTTAGACTGAGAATGAACTCCGTATGC
387 TGCCGATCCTGCTGCCGCAACCCTTGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
21320823 CTAAGCCAATCGATGAAACGAGC-GGACGGGCGGGCAGGCACTACGCTGGCCAGAGAAACGGGAT
452 CTAAGCCAACCGACGAAACGAGCAGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
21320887 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
516 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
21320952 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
581 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * **
21321017 CAAGACGATTTGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGTAGTTCAGGA-TTTTTAAAA
646 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAA
*
21321081 TTTTTTCGGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
711 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
21321146 ACAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
776 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
21321211 CATTTCAAACACTTTAATGTCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTT
841 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * *
21321268 GAAGGGGATGTGAGTTCTTGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
21321333 CACCCATTGCACATCATGTGCG-CACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGTCGCCGG
66 CACCCATCGCACATCATGTGCGACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
* * * * *
21321397 TGAGATTTTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
131 TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATG
* * * * * *
21321462 TTCC-AGCCCATCATGTGCTGTCGCAACCCTCGATCCGATCTGATCTTAGATTGGGAATGAACTC
196 -CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * * *
21321526 CGTATGCTTAGACTAGGAATGAACTCTGCATGCCTAAGTCAACCCACGAAACGAGCATGCTGGCG
260 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
21321591 CTCAGCCGACCAGAGGGGCGGGATGCACAAGCCGGGGACCGGCCGGGTCCCCCTCTGCGTGCTGT
325 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC
** * *
21321656 CGATCCTGCTGCCGCAACCCTTGATCCAATTCAATCTTAGACTGGGAATGAACTCCATATGCCTA
390 CGATCCTGCTGCCGCAACCCTTGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
21321721 AGCCAACCGATGAAACGAGCAGGCGGGCGGGCGGGTGGGCGCTACGTCGGCCAGAGAGACGGGAT
455 AGCCAACCGACGAAACGAGCAGGCGGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGAT
* * *
21321786 GCGCAACCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
516 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
* *
21321851 ATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCTCTTAAGCCTTCACGTGAAGTTTCATGG
581 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * *
21321916 CAAGATGACTCGTTTTTTATTTTTGATGATTTTTGAAACTTTTTGTGGTTCAGGATTTTTTAAAA
646 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAA
* * *
21321981 TTTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTGGCATGC
711 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* *
21322045 ACAAAAAAATTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCC
776 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
21322110 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTC-AATGCTTTT
841 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
21322166 TAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCAATATAAGGGCCAAGTACCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
21322231 CACCCATCGCACATCATGTGCGAACACCCCCTCGGCACCCCCGATCGTCGAAACCTCAATGCCGT
66 CACCCATCGCACATCATGTGCG-ACACCCCC-CGGC-CCCCCGATCGTCGGAACCCCAATGCCGC
* * * ***
21322296 CGGTCAGGTTCTCCGACGATGCTCAGACGATGGTGCCCCGGCGAAGAAAAAAGTACCACCAGCAC
128 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
* * * * *
21322361 ATGCTCGAGGCCAGCATGTGCTGCCGCAGCCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAAC
193 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * * *
21322426 GT-CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCATGTGG
258 -TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * * *
21322490 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGAATTGGCCGGGTCCCTCTATACGTGC
322 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGC
*** * * * * * ** *
21322555 TATTGATCTTGCTGTCGTAACCCTCGGTCTAG-TCTGATCTTAGACTGGGAATGAAGTCCGTATG
387 TGCCGATCCTGCTGCCGCAACCCTTGATCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATG
* *
21322619 CCTAAGCCAACCGACGAAACGAGTGGGCAGACGGGCGGGCGGGCACTACGCCGACCAGAGAGACG
451 CCTAAGCCAACCGACGAAACGA----GCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG
* * *
21322684 GGATGCGCAAGCCGTGGAACGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGT
512 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGT
**
21322749 GCCAAATGCCATTTTTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
577 GCC-AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * ** *
21322814 CATGGCAAGACGATTTGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGTAGTTCAGGATTTTC
641 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTT
*
21322879 TAAAATTTTTTCGGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
706 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* *
21322944 CATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
771 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
21323009 GTCCCAAATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGCGCTT
836 GTCCC-CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
21323072 TAAGGGGGTGTGAGTTCACAAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
21323137 CACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCATC-GAGATCGCAATGCC
66 CACCCATCGCACATCATGTGCG-ACA-CCCCC-CGG-CCCCCCGATCGTCGGA-ACCCCAATGCC
* * * * * *
21323201 TCCGGTCAAGTTCTCC-GCGATGCTTCGACGATGGTGCCCTGGTGAAGAAAAATGCAGCAACCAG
126 GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGC-ACCAG
* *
21323265 CACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGA---T---CT-----T-
190 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
* * *
21323318 -A----G-A--C-T----T-GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGC
255 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * *
21323369 GGGCGCTCAGCAGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCAGCCGGGT--CCCTCTGCGT
320 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGT
* * *
21323432 GCTGTCGATCCTGCTGACCGCAACCC-TCATCC-G-TCTGAT-TTACACTGGGAATGAACTCCGT
385 GCTGCCGATCCTGCTG-CCGCAACCCTTGATCCGGTTC-GATCTTAGACTGGGAATGAACTCCGT
* * * * *
21323493 ATGCCTAAGTCCAACCGACGAAACGAACGGGTGGGCGCGCGGACGAGCACTATGCCGGCCAGAGA
448 ATGCCTAAG-CCAACCGACGAAACGAGCAGG-CGG-GCG-GG-CGGGCACTACGCCGGCCAGAGA
21323558 GACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
508 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* ** * * *
21323622 TCACGCCAATGCCATTTTTATGGCTTGTAAACTCACACAATGGTCCCTTAAGCCTTCACGTGAGG
573 ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
** * * *
21323687 TTTCATGGCAAGACGACTTTTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATT
638 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATT
* * * * *
21323752 TTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACAT-ATCCTTTTATTTTGGT
703 TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * **
21323816 TGGCATGCATAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATGATTTGAAAAA
768 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
21323881 AGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATTCCCTT
833 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
21323946 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
21324011 CACACATCGCACATCATGTGCG-CACACCCCCGG-CCCCCTATCGTCAGAACCCCAATGCCGTCG
66 CACCCATCGCACATCATGTGCGACAC-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCG
* * * * * *
21324074 GTCAGGTTCTGCGGTGATGCTCCGACGATGGTACCCCGACGAAGAAAAATGCGACACCAGCATAT
130 GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * **
21324139 GCCCGATCCCAACATGTGCTGCAACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
195 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTC
* * * * * *
21324204 CGTATGCTTAGACTAGAAATGAACTCCGTATGCCTAAGTCTACCCACGAAATGAGCGTACGGGAG
260 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * ** *
21324269 TTCAGCCGGCTAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGCTGC
325 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGC
* * * * * *
21324334 TGATCGTGCTACTGCAATCCTTGGTCCGG-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
390 CGATCCTGCTGCCGCAACCCTTGATCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * *
21324398 AAGCCAACCGATGAAAC--G-A-GCGGACGGGCGGGAACTACGCCGACCAGAGAGACGGGATGCG
454 AAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* *
21324459 CAAGCCGTGGAT-GATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
519 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
**
21324523 CCATTTTTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
584 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
21324588 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
649 GACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTT
* * * * *
21324653 TTTCGGAAGGAGTTTCGACCCCAAACATGGTTGTCGTGATCCTTGTATTTTTGTTGGCATGCACA
714 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
21324718 AAACAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
779 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
21324783 TTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTT
844 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
21324837 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGGATA-GGGGCCAATATAAGGGCCAAGTACCA
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* **
21324901 GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCGAATATCG
65 GCACCCATCGCACATCATGTGCG-ACA-CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCG
* * * *
21324966 CCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCTGGCGAAGAAAAATTCGGCACCAGCA
127 CCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
* * * * * * *
21325031 CAAGCCTGAGCCCAACATTTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATGAA
192 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAA
* * *
21325096 CTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCTACCCACGAAATGAGCGTGCGG
257 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * ** *
21325161 GCGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGCATGC
322 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGC
* * * * * * * *
21325226 TGCTGATCATGCTACTGCAATCCTTGGTCC-GATCTGATCTTAGACTGGGAACGAACTCCGTATG
387 TGCCGATCCTGCTGCCGCAACCCTTGATCCGGTTC-GATCTTAGACTGGGAATGAACTCCGTATG
*
21325290 CCTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGAT
451 CCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGAT
21325351 GCGCAAGCCGTGGAT-GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
516 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCA
** *
21325415 ATGCCATTTTTATTTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGG
581 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
21325480 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTTAAA
646 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGA-TTTTTTAAA
** ** * * **
21325545 ATTTTTTCAAAAGGAGTTTTCACCCCAAACTTGGTAGCCGTGATCCTTGTATTTCTGTTGGTGTG
710 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* *
21325610 CACAAAAAAATCCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
775 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
21325675 CCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCAT
840 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
21325733 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
21325798 CACCCTTCGCACATCATGTGCGCACACCCCCCGGCTCCCCTGATCGTCGGATCCCCAATGCCGCC
66 CACCCATCGCACATCATGTGCG-ACACCCCCCGGC-CCCCCGATCGTCGGAACCCCAATGCCGCC
** * * * *
21325863 ATTCAAGTTCTCCGGCTATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACA
129 GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
* * * *
21325928 TGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTTCAGTCTGATCTGAGACTGGGAATGAACT
194 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT
* * *
21325993 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGGGCATGCGGGC
259 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * *
21326058 GCTCATCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTG
324 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG
* *
21326123 CCGATCCTGCTACCGCAACCCTCGATCCGGTTCGATCTTAGA-TAGGGAATGAACTCCGTATGCC
389 CCGATCCTGCTGCCGCAACCCTTGATCCGGTTCGATCTTAGACT-GGGAATGAACTCCGTATGCC
* * *
21326187 TAAGCCAACCGACGAAACGAGCAGGCAGGCGGGTGGGCGGGCACTATGCCAGCCAGAGAGACGGG
453 TAAGCCAACCGACGAAAC--G-A-GCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * *
21326252 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCATGC
514 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
*
21326317 CAATGCCATTTTTATGGGTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
579 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
21326382 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGACGGTTCAGGATTTTTTA
644 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTG-CGGTTCAGGATTTTTTA
* *
21326447 AAATTTCTTCGGAAGGAGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTATTTTTGTTGGCA
708 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * * *
21326512 TGCACAAAAACATTCAGCTTAAAACTCGAACTGAACAAGATTTTGTGACCATTTGAAAAAAGTGT
773 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*** *
21326577 TGTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTT
838 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
21326637 TAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
21326702 CACCCATCGCACATCATGTGCGCACACCCCCTCGGACCCCTCGATTGACGGAACCCTAATGCCGC
66 CACCCATCGCACATCATGTGCG-ACACCCCC-CGG-CCCCCCGATCGTCGGAACCCCAATGCCGC
* *
21326767 CGGTCAGG---T-------T-CTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCAC
128 CGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
** * * * * *
21326821 ATGCCAAAGCCCAGCATGTGCTGTCGTAACCCTTGGTTCGGTCCGATCTTAGACTGGGAATGAAC
193 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC
* * *
21326886 TCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAACTCAACCCACGAAACGAGTGTGCGGG
258 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * *
21326951 CGCTCAGCCGACCA-AGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTC-ACTGTGC
323 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGC-GTGC
* * * * *
21327014 TGCCGATCCTGCTGCTGCAACCCTCGATTCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
387 TGCCGATCCTGCTGCCGCAACCCTTGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
21327079 CTAAGCCAACCGACGAAAC--G-A-GCGGACGGGCGGGCACTACGCCGGCCAAAGAGACGGGATT
452 CTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATG
* *
21327140 CGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATCTCTACGTGCCAA
517 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAA
* * * *
21327205 CGCCATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACATTAAGTTTCATGGC
582 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
*
21327270 AAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTTAAAT
647 AAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAAT
* *
21327335 TTTTTC-GAAGGAGTTTTGGCCCCAAACATGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCA
712 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* *
21327399 CAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTCG-GACCATTTGAAAAAAATGTCCC
777 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT-GTGACCATTTGAAAAAAGTGTCCC
*
21327463 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCT-TT
841 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
21327519 TCAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
1 T-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
21327584 GCACCCATCGCACATCATGTGCG-CGTACCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGCC
65 GCACCCATCGCACATCATGTGCGAC--A-CCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCC
* ** * * **
21327648 GTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGTGCCAGC
126 GCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
* * *
21327713 ACTTGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
191 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGA
* *
21327778 ACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCG
256 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * ** * *
21327843 GGCGCTCAACCGGCAAGAGGGGCGAGATGCGCAAGCCGATGATCGATCC-GGTCCCCCTCTGCGA
321 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-GCCGGGTCCCCCTCTGCGT
** * *
21327907 GCTGCCGATCCTGCTATCGCAACCCTCTG-TCTGGTTGGATCTTAGACTGGGAATGAACTCCGTA
385 GCTGCCGATCCTGCTGCCGCAACCCT-TGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTA
* * *
21327971 TGCGTAAGCCAACCGACGAAAC--G-A-GC-GACGAGCGGGCACTACGCCGGCCAGAGAGACGGG
449 TGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * * *
21328031 ATACGCAAGCCATGGATCGATAGGGCGGTAGGTGGGCTTAGGCACATCTTCATATTTCTACGTGC
514 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
* *
21328096 CAATGCCATTTTTTTGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
579 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * * *
21328161 GGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAA
644 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAA
* * *
21328226 AATTTTTGCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
709 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
21328291 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGTGACCATTTGAAAAAAGTGTC
774 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
21328356 CACATTTCAGACACTTTAACGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTT
839 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
21328415 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
1 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
21328480 CACCCATCGCACATCATGAGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCG
66 CACCCATCGCACATCATGTGCG-ACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCG
* * *
21328545 GTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCTGGCGAAGAAAAATGC-GCACCAGCACAT
130 GTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
* * * * * * *
21328609 GCCCGAGCCCAGCATGTGCTACCACAACCTTGGGTCTGATC-GAATCTTAGACTAGGAATGAACT
195 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTG-ATCTTAGACTGGGAATGAACT
* *
21328673 CCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGC
259 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* ** * ** * **
21328738 GCTCAGTCGGCCAGAGGGGCAAGATGCACAAGCTAGGGATCGGTCGGGTCCCCCTCTATGTGCTG
324 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTG
* ** * * * * **
21328803 TCGATCCTGCTGCCTTATCCCTCGATCCAGTTTGATCTTAGACTAAGAATGAACTCCGTATGCCT
389 CCGATCCTGCTGCCGCAACCCTTGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* *
21328868 AAGCCAACCGACGAAACGAGCAGGCGGGCGGACAGGCGGGCACTATGTCGGCCAGAGAGACGGGA
454 AAGCCAACCGACGAAACGAGCAGGCGGGC-G---GGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * *
21328933 TGCGTAAGCCGTGGATCGATAGGGTGGGAGGTGGGTTTAGGCAGATCTTCATATTT-TGGA-ATG
515 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT--ACGTG
*
21328996 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCA
578 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
21329061 TGGCAAGACGACTC
643 TGGCAAGACGACTC
21329075 TTTGAGGGGC
Statistics
Matches: 7734, Mismatches: 823, Indels: 291
0.87 0.09 0.03
Matches are distributed among these distances:
869 78 0.01
870 36 0.00
871 4 0.00
872 7 0.00
874 136 0.02
875 87 0.01
876 158 0.02
877 70 0.01
878 69 0.01
879 22 0.00
880 8 0.00
881 89 0.01
882 9 0.00
883 276 0.04
884 31 0.00
885 196 0.03
886 4 0.00
887 3 0.00
889 6 0.00
890 236 0.03
891 215 0.03
892 249 0.03
893 205 0.03
894 582 0.08
895 1656 0.21
896 360 0.05
897 508 0.07
898 192 0.02
899 340 0.04
900 75 0.01
901 405 0.05
902 401 0.05
903 220 0.03
904 488 0.06
905 82 0.01
906 141 0.02
907 89 0.01
908 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGG
TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCC
GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCC
GATCCTGCTGCCGCAACCCTTGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACCGACGAAACGAGCAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
Found at i:21322444 original size:26 final size:26
Alignment explanation
Indices: 21322408--21322460 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21322398 CTGGTCTGAT
21322408 CTTAGACTGGGAATGAACGT-CGTATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
21322434 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21322460 C
1 C
21322461 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21324213 original size:26 final size:26
Alignment explanation
Indices: 21324184--21324236 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21324174 CCGGTCTGAT
* *
21324184 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
21324210 CTTAGACTAGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCGTATG
21324236 C
1 C
21324237 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCGTATG
Found at i:21325108 original size:26 final size:26
Alignment explanation
Indices: 21325079--21325131 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21325069 CCGGTCCGAT
* *
21325079 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21325105 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21325131 C
1 C
21325132 CTAAGTCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21326013 original size:26 final size:26
Alignment explanation
Indices: 21325977--21326026 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
21325967 GTCTGATCTG
21325977 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
21326003 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
21326027 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:21326897 original size:26 final size:26
Alignment explanation
Indices: 21326868--21326920 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21326858 TCGGTCCGAT
21326868 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21326894 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21326920 C
1 C
21326921 CTAACTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21327791 original size:26 final size:26
Alignment explanation
Indices: 21327762--21327814 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21327752 CCGGTCTGAT
21327762 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21327788 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21327814 C
1 C
21327815 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21328693 original size:26 final size:26
Alignment explanation
Indices: 21328654--21328706 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21328644 CTGATCGAAT
21328654 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21328680 CTTAGACT-GCGAATGAACTCCGTATG
1 CTTAGACTAG-GAATGAACTCCGTATG
21328706 C
1 C
21328707 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21329698 original size:663 final size:661
Alignment explanation
Indices: 21328410--21329733 Score: 1778
Period size: 663 Copynumber: 2.0 Consensus size: 661
21328400 ATCTCAAATG
* * * *
21328410 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
1 CTCTTTAAGGGGCTGTAAGTTCTCAAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGG
*
21328475 ACCAGCACCCATCGCACATCATGAGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGC
66 ACCAGCACCCATCGCACATCATGAGCGCACACCCCCCGACCCCCCGATCGCCGGAACCCCAATGC
* * * * * *
21328540 CGTCGGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCTGGCGAAGAAAAATGCGCACCAGC
131 CGCCGATCAGGTTCTCCGACAATGCTCCGATGATGGTGCCCCGACAAAGAAAAATGCGCACCAGC
* ** *
21328605 ACATGCCCGAGCCCAGCATGTGCTACCACAACCTTGGGTCTGATCGAATCTTAGACTAGGAATGA
196 ACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCAGTCCGATCGAATCTTAGACTAGGAATGA
* * *
21328670 ACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCG
261 ACTCCATATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAACCGTACG
* * * * ** *
21328735 GGCGCTCAGTCGGCCAGAGGGGCAAGATGCACAAGCTAGGGATCGGTCGGGTCCCCCTCTATGTG
326 GGCGCTCAGCCGACCAGAGGGGCAAGATGCACAAGCGAGAGATCAATCGGGTCCCCCTCTACGTG
** ** ** * *
21328800 CTGTCGATCCTGCTGCCTTATCCCTCGATCCAGTTTGATCTTAGACTAAGAATGAACTCCGTATG
391 CTACCGATCCTGCAACCGCAACCCTCGATCCAGTCTGATCTTAGACTAAGAATGAACTCCGTATG
* * * *
21328865 CCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGACAGGCGGGCACTATGTCGGCCAGAGAGACG
456 CCTAAGCCAACCGACGAAACGAACAGGAGGGCGGACAGGCGGGCACTACGCCGGCCAGAGAGACG
* *
21328930 GGATGCGTAAGCCGTGGATCGATAGGGTGGGAGGTGGGTTTAGGCAGATCTTCATATTTTGGAAT
521 GGATGCGCAAGCCGTGGATCGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTT-GAAT
* *
21328995 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTC
585 ACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGCTTC
*
21329060 ATGGCAAGACGA
650 ATAGCAAGACGA
* *
21329072 CTCTTTGAGGGGCTGTAAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGG
1 CTCTTTAAGGGGCTGTAAGTTCTCAAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGG
* *
21329137 ACCAGCACCCTTCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGCCGGAACCCCAATGC
66 ACCAGCACCCATCGCACATCATGAGCGCACACCCCCCGACCCCCCGATCGCCGGAACCCCAATGC
*
21329202 TGCCGATCAGGTTCTCCGACAATGCTCCGATGATGGTGCCCCGACAAAGAAAAATGCAGCACCAG
131 CGCCGATCAGGTTCTCCGACAATGCTCCGATGATGGTGCCCCGACAAAGAAAAATGC-GCACCAG
** ** * * *
21329267 CACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCCGGTCCG-ATCTTAGACTGGGATT
195 CACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCAGTCCGAT-CGAATCTTAGACTAGGAAT
* * **
21329331 GAACTCCATATGCTTAGATTTG-GAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGACCGT
259 GAACTCCATATGCTTAGA-CTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAACCGT
* * ** ** *
21329395 ACGGGTGCTTAGCCGACCAGAGGGGCGGGATGCGTAAGCCGA-AGATCAATCGGGTCCCCCTCTG
323 ACGGGCGCTCAGCCGACCAGAGGGGCAAGATGCACAAG-CGAGAGATCAATCGGGTCCCCCTCTA
* * * * ** *
21329459 CGTGCTACCGATCCTGCAATCGCAACCCTTGGTTC-GATCTGATCTTAGACTGGGAATGAACTTC
387 CGTGCTACCGATCCTGCAACCGCAACCCTCGATCCAG-TCTGATCTTAGACTAAGAATGAACTCC
* * * * *
21329523 GTATGCGTAAGCCAACTGACGAAACGAACGGGTAGGG-GGGCGGGCGGGCACTACGCCGGCCAGA
451 GTATGCCTAAGCCAACCGACGAAACGAACAGG-AGGGCGGACAGGCGGGCACTACGCCGGCCAGA
** *
21329587 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATTTTCATATTT
515 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTT
* *
21329652 CT-ACGTACCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACATG
580 -TGA-ATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATG
*
21329716 AAGTTTCATAGCAAGACG
643 AAGCTTCATAGCAAGACG
21329734 GCTCGTTTTC
Statistics
Matches: 571, Mismatches: 83, Indels: 15
0.85 0.12 0.02
Matches are distributed among these distances:
662 173 0.30
663 388 0.68
664 10 0.02
ACGTcount: A:0.24, C:0.27, G:0.28, T:0.21
Consensus pattern (661 bp):
CTCTTTAAGGGGCTGTAAGTTCTCAAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGG
ACCAGCACCCATCGCACATCATGAGCGCACACCCCCCGACCCCCCGATCGCCGGAACCCCAATGC
CGCCGATCAGGTTCTCCGACAATGCTCCGATGATGGTGCCCCGACAAAGAAAAATGCGCACCAGC
ACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCAGTCCGATCGAATCTTAGACTAGGAATGA
ACTCCATATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAACCGTACG
GGCGCTCAGCCGACCAGAGGGGCAAGATGCACAAGCGAGAGATCAATCGGGTCCCCCTCTACGTG
CTACCGATCCTGCAACCGCAACCCTCGATCCAGTCTGATCTTAGACTAAGAATGAACTCCGTATG
CCTAAGCCAACCGACGAAACGAACAGGAGGGCGGACAGGCGGGCACTACGCCGGCCAGAGAGACG
GGATGCGCAAGCCGTGGATCGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTTGAATA
CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGCTTCA
TAGCAAGACGA
Found at i:21330237 original size:26 final size:26
Alignment explanation
Indices: 21330208--21330260 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21330198 CCGGTCCGAT
*
21330208 CTTAGACTAGGTATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21330234 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21330260 C
1 C
21330261 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21331145 original size:26 final size:26
Alignment explanation
Indices: 21331107--21331159 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21331097 CCGATCCGAT
* *
21331107 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21331133 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21331159 C
1 C
21331160 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21332041 original size:26 final size:26
Alignment explanation
Indices: 21332005--21332057 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21331995 CCAGTCTCAT
* *
21332005 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21332031 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21332057 C
1 C
21332058 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21332574 original size:905 final size:901
Alignment explanation
Indices: 21329072--21334061 Score: 6399
Period size: 898 Copynumber: 5.6 Consensus size: 901
21329062 GGCAAGACGA
* * * * * *
21329072 CTCTTTGAGGGGCTGTAAGTTCTCGAGGTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGG
1 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
21329137 ACCAGCACCCTTCGCACATCATGTGCGCACA-CCCC-CCGACCCCCCGATCGCCGGAACCCCAAT
66 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCGCCCCCCCGATCGCCGGAACCCCAAT
* * * * * * * * *
21329200 GCTGCCGATCAGGTTCTCCGACAATGCTCCGATGATGGTGCCCCGACAAAGAAAAATGCAGCACC
131 GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACC
* * *
21329265 AGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAT
196 AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * * * *
21329330 TGAACTCCATATGCTTAGATTTGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGACCGT
261 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * **
21329395 ACGGGTGCTTAGCCGACCAGAGGGGCGGGATGCGTAAGCCGAAGATCAATCGGGTCCCCCTCTGC
326 GCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGAGATCGACCGGGTCCCCCTCTAT
* * *
21329460 GTGCTACCGATCCTGCAAT-C-GCAACCCTTGGTTCGATCTGATCTTAGACTGGGAATGAACTTC
391 GTGCTGCCGATCCT--ACTGCTGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTTC
* * * * *
21329523 GTATGCGTAAGCCAACTGACGAAACGAACGGGTAGGGGGGCGGGCGGGCACTACGCCGGCCAGAG
454 GTATGCCTAAGCCAACCGACGAAACGAGCGGG--GGCGGGAGGGCGGGCACTACGCCGGCCAGAG
* *
21329588 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATTTTCATATTTC
517 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * * *
21329653 TACGTACCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACATGAA
582 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * *
21329718 GTTTCATAGCAAGACGGCTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-ACGGTTCGAGA
647 GTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGA-GGTTCG-GA
* * **
21329782 TTTTTTAAAATTTTTT-GGAAGTACTTTTGGCAACAAACTTGGTAGATGTGATCCTTGTATTTTT
710 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTT
* * *
21329846 GTTGGCATGCACAAAAAAGTTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAAA
775 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
21329911 AAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
840 AAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * *
21329973 CTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGT
1 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * *
21330038 ACCAGCACCCATAGCACATCATGTGCGCACACCCCCT-GGCCCCCCCGATCGCCGAAACCCCAAT
66 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCGCCCCCCCGATCGCCGGAACCCCAAT
* * * * **
21330102 GTCG-CAGGTCAAG-T-T----C--T--T-CGATGATGGTGCCCC-AGCAAAGAAAAATGTGGCA
131 GCCGTC-GGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATACGGCA
* ** ** * *
21330154 CCAGCACATGCCTGAGCCCAGCATGTAATGTGGCAACCCTCGGTCCGGTCCGATCTTAGACTAGG
194 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* * **
21330219 TATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATAAGC
259 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * * * * * * *
21330284 GTGC-GGTCGTTCAGCCGGCCAAAGGGGTGGGATGCGTAAGTCGGGGATTGGCCGGGTCCCCCTC
324 GTGCGGGT-GCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGAGATCGACCGGGTCCCCCTC
* * * * * * *
21330348 TACGTGCTGTCGATCCTGCTGCTGCAACCCTCGG-TCTGTTTCGATCTTAGACAGGGAATGAACT
388 TATGTGCTGCCGATCCTACTGCTGCAACCCTTGGTTCGGTCT-GATCTTAGACTGGGAATGAACT
* * * * * *
21330412 CCGTATGGCTAAGCCAACCGACGAAACAAGC--GGGCGGGTGGGCGGGCACTACGTCGGCCAGAC
452 TCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGGAGGGCGGGCACTACGCCGGCCAGAG
21330475 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
517 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*
21330540 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAA
582 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
*
21330605 GTTTCATGGCAAGACGA-TTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTT-ACGGTTCAAG
647 GTTTCATGGCAAGACGACTT-GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGA-GGTTC-GG
* ** *
21330667 ATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCAAAAACTTGGTAGATGTGATCCTTCTATTTT
709 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTT
* * * *
21330732 T-TTTGCATGCACAAGAAAATTCAGCTAAAAACTTGAACTGTACAAGATTTTGTGACCATTTGAA
774 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
21330796 AAAAGTATCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
839 AAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
21330859 ATCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
1 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
21330924 ACCAGCATCCATCGCACATCATGTGCGCACACCCCCCTCCGTTCCCCCGGATCGTCGGAACACCA
66 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCTCCG-CCCCCCCGATCGCCGGAACCCCA
*
21330989 ATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCA
129 ATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCA
*
21331054 CCAGCACATGCCCGAGCCCAGCATGTGCTG-CGTAACCCTCGGTCCGATCCGATCTTAGACTGGG
194 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* *
21331118 AATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
259 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
* * * ** * **
21331183 GTGCGGGTGCT-AGCCAACCAAAGGGGCGGGATGCACAAGCCCGG-GATCGGTCGAGTCCCCCAG
324 GTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAG-CCGGAGATCGACCGGGTCCCCCTC
* * * ** *
21331246 TATGTGCTGCCGATCCTGCTGTTGCAACCCTTGGTCCGGTCCAATCTTAAACTGGGAATGAA-TT
388 TATGTGCTGCCGATCCTACTGCTGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTT
* *
21331310 CCGTATGCCTAAGCCAACCGACAAAACGAGC--GGGC----GGGCTGGCACTACGCCGGCCAGAG
453 -CGTATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGGAGGGCGGGCACTACGCCGGCCAGAG
* * *
21331369 AAACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTC
517 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
*** * * * *
21331434 TATGTGACAATGCCATTTTTATGACTTGTAAAGTCATACAATGGTCCCTTAAGCCTTCATGTGAA
582 TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * *
21331499 GTTTCATGCCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAATCTTTTTGTGGTTCGAGAT
647 GTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTCG-GAT
**** *
21331564 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGGCAAGATCCTTGTATTTTTC
711 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTG
* *
21331629 TTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTTGAAAA
776 TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
21331694 AAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
841 AAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
21331755 CTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
1 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
21331820 ACCAGCATCCATCGCACATCATGTGCGCACACTGCCCCTCCGTTCCTCCGGATCGCCGGAACACC
66 ACCAGCACCCATCGCACATCATGTGCGCACAC--CCCCTCCG-CCCCCCCGATCGCCGGAACCCC
21331885 AATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGC
128 AATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGC
* *
21331950 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGTCTC-ATCTTAGATTG
193 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTC-CGATCTTAGACTG
* *
21332014 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGA
257 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* * * * * * *
21332079 GTGTGCAGGTACTCAGCCGGCCAGAGGGGCAGGATACGCAAGACGGAGATCGACCGGGTCCCCCT
322 GCGTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGAGATCGACCGGGTCCCCCT
* * * *
21332144 CTGTGTGCTGTC-ATTCCTACTGCTGCAA-CCTTCGGTTCAGTCTAATCTTAGACTGGGAATGAA
387 CTATGTGCTGCCGA-TCCTACTGCTGCAACCCTT-GGTTCGGTCTGATCTTAGACTGGGAATGAA
* * *
21332207 CTTCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGACGGGAGGGCGAGCACTACGCTGGCC
450 CTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-GG-CGGGAGGGCGGGCACTACGCCGGCC
*
21332272 AGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTA-GCACATCTTCATA
513 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
21332336 TTTCTGCATGCCAATGCCAATTTTT-T-GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
578 TTTCTGCATGCCAATGCC-ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * *
21332399 GTGAAGTTTCATGGCAAGACGACTTGTTTTTTATTTTTCACGATTTTTTAAACTTTTTGAGGTTC
642 GTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTC
* * * *
21332464 AGGAGTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTTGACGTGATCCTTGTAT
707 -GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTAT
* *
21332529 TTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTT
771 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* *
21332594 GAAAAAAGTGTCTCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAAT
836 GAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
21332659 G
901 G
21332660 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
1 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* ** ** *
21332725 ACCAGCACCCATCGCACATCATGT--GCACA-CCCC-CCGGCCCCCCGATCATCAAAACCCCGAT
66 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCGCCCCCCCGATCGCCGGAACCCCAAT
**
21332786 GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACC
131 GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACC
* *
21332851 AGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTTCGATCTTAGACTGGGAA
196 AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * * * ** *
21332916 TGAACTCCGTATGCTTAGACTGGCAATAAACTCCATATGCCTAAGTAAACCCACAAAATAAGCAT
261 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * * * * *
21332981 GCGGGCGCTGAACTGACCAGAGGGGCAGGATGTGCAAGAC-GACGATCGATCGGGT-CCCC-C--
326 GCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGA-GATCGACCGGGTCCCCCTCTA
* * * *
21333041 --T-CTG-C-A---TAATG-TCGCAACCCTT-GATCTGGTCTGATTTTAGACTGGGAATGAACTC
390 TGTGCTGCCGATCCTACTGCT-GCAACCCTTGGTTC-GGTCTGATCTTAGACTGGGAATGAACTT
* *
21333096 CGTATGCCTAAGCCAACCGGCGAAACGAGCGGGTGGGCGGGCA-GGCGGGCACTACGCCAGCCAG
453 CGTATGCCTAAGCCAACCGACGAAACGAGC-GG-GGGCGGG-AGGGCGGGCACTACGCCGGCCAG
*
21333160 AGAGACGGGATGCGCAGGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
515 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
21333225 TCTGCATGCCAATGCCATTTTTATGGCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTG
580 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
21333290 AAGTTTCATGGCAGGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGG
645 AAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTC-GG
* *
21333355 ATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATGGTAGATGTGATCCTTGTATTTT
709 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTT
* * *
21333420 TGTTGGCATGTACAAAAAAATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCGTTTGAA
774 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
21333485 AAAAGTGTCCCCATTTAAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATG
839 AAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
21333548 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGGGCCAATATAAGGGCCAAGT
1 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * **
21333613 ACCAGCACCCATCGCACATCATGTGCGCACACCACCT--GACCCCCCCAATCACTAGAACCCCAA
66 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCG-CCCCCCCGATCGCCGGAACCCCAA
* * * *
21333676 TGCCGCCGGTCAGG---T-------T-CTCCGACGATGGTGCCCC-AGTGAAGAGAAATACAGCA
130 TGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATACGGCA
* * * * * ** *
21333729 CCAGCACATGCTCGAGCCCAGCATGTACTGCTGTAACCCTTGTTTTGGTTCGATCTTAGACTGGG
194 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGG
* * * * *
21333794 AATGAACTCCATATGCTTAGACTGGGAATGTACTCTGTATGCCTAAGTCAACCCACGGAACGAGT
259 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC
** * * * * *
21333859 GTGCGGGCACTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATTGGCCGGGTCCCCCTCT
324 GTGCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGAGATCGACCGGGTCCCCCTCT
* * * ** * * * *
21333924 ATGTGCAGCCGATCATGCTGCCACAACCCTCGATCCGGTCTGATCTTAGACTGAGAATGAAC-TC
389 ATGTGCTGCCGATCCTACTGCTGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTTC
* * * * *
21333988 ---TG--TATGCCAACCGACGAAACGAGCGGGCGAACGGGCGGGCGAGCACTACGCCGACCAG-G
454 GTATGCCTAAGCCAACCGACGAAACGAGCGGG-G-GCGGGAGGGCGGGCACTACGCCGGCCAGAG
* *
21334047 -GGCGGGATGTGCAAG
517 AGACGGGATGCGCAAG
21334062 TAGAGGATCG
Statistics
Matches: 3606, Mismatches: 393, Indels: 197
0.86 0.09 0.05
Matches are distributed among these distances:
879 1 0.00
880 181 0.05
881 6 0.00
882 1 0.00
884 13 0.00
885 8 0.00
886 423 0.12
887 273 0.08
888 368 0.10
889 32 0.01
890 19 0.01
891 301 0.08
892 36 0.01
893 1 0.00
894 175 0.05
895 81 0.02
896 214 0.06
897 133 0.04
898 457 0.13
899 221 0.06
900 66 0.02
901 91 0.03
902 37 0.01
903 6 0.00
905 363 0.10
906 28 0.01
907 71 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
ACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCGCCCCCCCGATCGCCGGAACCCCAAT
GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACC
AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
GCGGGTGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGAGATCGACCGGGTCCCCCTCTAT
GTGCTGCCGATCCTACTGCTGCAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAACTTCGT
ATGCCTAAGCCAACCGACGAAACGAGCGGGGGCGGGAGGGCGGGCACTACGCCGGCCAGAGAGAC
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGAGGTTCGGATTTTTT
AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
Found at i:21332932 original size:26 final size:26
Alignment explanation
Indices: 21332903--21332955 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21332893 CCGGTTCGAT
* * *
21332903 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATAAACTCCATATG
21332929 CTTAGACTGGCAATAAACTCCATATG
1 CTTAGACTGGCAATAAACTCCATATG
21332955 C
1 C
21332956 CTAAGTAAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATAAACTCCATATG
Found at i:21334886 original size:26 final size:26
Alignment explanation
Indices: 21334850--21334902 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21334840 TCGATCTGAC
*
21334850 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
21334876 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
21334902 C
1 C
21334903 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:21335628 original size:26 final size:26
Alignment explanation
Indices: 21335591--21335643 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21335581 CCGGTCTGAT
21335591 CTTAGATCGGGAATGAACTCCATATG
1 CTTAGATCGGGAATGAACTCCATATG
*
21335617 CTTAGA-CTGGGAATGAACTCCGTATG
1 CTTAGATC-GGGAATGAACTCCATATG
21335643 C
1 C
21335644 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCCATATG
Found at i:21335675 original size:745 final size:743
Alignment explanation
Indices: 21334131--21335675 Score: 2262
Period size: 745 Copynumber: 2.1 Consensus size: 743
21334121 CTGGTCTGAT
* * * * * *
21334131 CTTAGACTGGGAATGAACTCTGTATGGCTAAGCCAACCGACAAAACGAGCGGGTGGGTGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGG
* * *
21334196 CGGGCATTACACCGACCAAAGAGACGGGATGCGGAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACACCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGT
*
21334261 TTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
21334326 TCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCACGATTTTTG
* * *
21334391 AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGTAAGAAGTTTTAGCCCCAAACTTGGTA
260 AAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTTGGAAGAAGTTTTAGCCCCAAACTTGGCA
* * *
21334456 GATGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAGAAACTCGAACTGTACAA
325 GAAGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAACTGTACAA
* * * *
21334521 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATAGCTACTGGCAGCAAAC
390 GAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGATACTGACAGCAAAC
* * * *
21334586 CTGTACAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAGGGATCGGAGGA
455 CTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGAGGA
* * *
21334651 CAATATAAGGGCAAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCCGGCATCCCCG
520 CAATATAAGGGCAAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCACCCCCA
*** * * * **
21334716 ATCGTTGGAACCCCAATGCCGTCGGTTAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCGACG
585 ATCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
** * * * * *
21334781 AAGAAAAATGTGGCACCAGCACATGCCCTAGCCCAGTATGTGCTGCAACAACCCTCGGTTCGATC
650 AAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATATGCT-CAACAACCCTCGGTCCGATC
*
21334846 TGACCTTAGACTGGGAATGAACTCCGTATG
714 TGACCTTAGACTGGGAATGAACTCCATATG
* * *
21334876 CTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCTGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGGG
* * * *
21334941 TGGGCACTACGCCGACTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGT
65 CGGGCACTACACCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGT
*
21335006 TTAGGCACATCTTCATATTTCTGCGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
21335071 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCACGATTTTTG
* * *
21335136 AAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATT-GC
260 AAACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTTGGAAGAAGTTTTAGCCCCAAAC-TTGGC
* *
21335200 AGAAGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAATATTAAGCTAAAAACT-GAAGC-GTAC
324 AGAAGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAA-CTGTAC
*
21335262 AAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGATACTGACAGCAA
388 AAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGATACTGACAGCAA
* * *
21335327 ACCTGTAAAATCTCAAATTCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGG
453 ACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGAG
* * **
21335392 GCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACA-CCCCCCGGC-CCCC
518 GACAATATAAGGGCAAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCACCCC
21335455 CAATCACCGAAACCCCAATGCC-TCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
583 CAATCACCGAAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * *
21335519 ACGAAGAAAAATGCAGCACCAACACATGCCCGAGTCCAGCATATGCT-ATCGTAACCTTTGGTCC
647 ACGAAGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATATGCTCAAC--AACCCTCGGTCC
* *
21335583 GGTCTGATCTTAGA-TCGGGAATGAACTCCATATG
710 GATCTGACCTTAGACT-GGGAATGAACTCCATATG
* *
21335617 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GCGGGCG
21335676 CTTAGCCGGC
Statistics
Matches: 716, Mismatches: 77, Indels: 18
0.88 0.09 0.02
Matches are distributed among these distances:
739 2 0.00
740 4 0.01
741 186 0.26
742 9 0.01
743 170 0.24
744 19 0.03
745 324 0.45
746 2 0.00
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.27
Consensus pattern (743 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGGC
GGGCACTACACCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGCTGGGTT
TAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTGCAGTTCAGGATTTTTTAAAATTTTTTTGGAAGAAGTTTTAGCCCCAAACTTGGCAG
AAGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAACTGTACAAG
AATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGATACTGACAGCAAACC
TGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGAGGAC
AATATAAGGGCAAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCACCCCCAA
TCACCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
AGAAAAATGCAGCACCAACACATGCCCGAGCCCAGCATATGCTCAACAACCCTCGGTCCGATCTG
ACCTTAGACTGGGAATGAACTCCATATG
Found at i:21336523 original size:26 final size:26
Alignment explanation
Indices: 21336487--21336537 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21336477 GATCCGATCC
*
21336487 TAGACTAGGAATGAACTCGGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
21336513 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
21336538 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:21336903 original size:902 final size:886
Alignment explanation
Indices: 21334876--21338170 Score: 4242
Period size: 899 Copynumber: 3.7 Consensus size: 886
21334866 ACTCCGTATG
* *
21334876 CTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCTGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGAGCGGGC---
* * *
21334941 TGGGCACTACGCCGACTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT-AGCTGGG
63 -GGGCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAG-TGGG
* *
21335005 TTTAGGCACATCTTCATATTTCTGCGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
126 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
21335070 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
21335135 GAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATT-G
256 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGG
* * * * * *
21335199 CAGAAGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAATATTAAGCTAAAAACT-GAAGCGTAC
320 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
* *
21335262 AAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGATACTGACAGCAA
385 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAA
* * * *
21335327 ACCTGTAAAATCTCAAATTCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGG
450 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGG
* *
21335392 GCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCA
515 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGGCCCCCCG
* * * * *
21335457 ATC-ACCGAAACCCCAATGCCTCTGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
579 ATCGTCCG-AACCCCAATG--TC--GTC--G--CT-C-AAG-TTCTCAGACGATGGTGCCCCGAT
* * * * * ** * * *
21335521 GAAGAAAAATGCAGCACCAACACATGCCCGAGTCCAGCATATGCTATCGTAACCTTTGGTCCGGT
632 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
*
21335586 CTGATCTTAGA-TCGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
697 CTGATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
21335650 CAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGTGCGAGCCAGGGAT
761 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* ** * *
21335715 CGGTCGGGT-CCCCTCTGTATGCTGCCGATCCTACT-GTCGCAACCCTCGGTCTGGTCCGTT
826 CGGTCAGGTCCCCCTCTGCGTGCTGCCGATCCTACTACT-GCAACCCTCGGTCTGGTCCGAT
* * * * * * *
21335775 CTTAAACTGGGAATGAACTCCGTGTGCCTAAGCCAATCGATGAAATGAGTTGGCGGGTGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA----GCGGGCGAGCGGG
* * *
21335840 CGGGCACAAC-ACCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGG
62 CGGGCACTACGA-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGG
* * *
21335904 TTTAGGCACATCTTCATATTTCTAGGTGCCAGTGCCATTTTTATGGTTTGTAAATTCATACAATG
126 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
21335969 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGGACTCGTTTTCTATTTTTCATGATTTTT
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* *
21336034 GAAATTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
256 GAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
21336099 AGACGTGATCCTTGTATTTTTGTTGGCCTGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* * *
21336164 ATATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAATGGCTACTGAAAGC-AA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAA
21336228 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGG
** * * *
21336293 CCAATATGGGGGCCAAGTACCAGCACCCATCACACGTTATGTGCGCAAAGCCCCCCCCGGGCTCC
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--A--CCCCCCC-GGC-CC
* * *
21336358 CCCGATCGTCCGAACCCTAATGTCGTCGATCAAGTTCTCAGACGATGGTGCCCCGATGAAAAAAA
575 CCCGATCGTCCGAACCCCAATGTCGTCGCTCAAGTTCTCAGACGATGGTGCCCCGATGAAGAAAA
* * * * * * *
21336423 ATACGGCACCAGCACAAGCCCGACCCCAGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCCT
640 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTT
* * *
21336488 AGACTAGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACG
705 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * *
21336553 AAACGAGCGTTCGGGCGCTCAACGAGCGCTCAACCGGCCAGAAGGGCGGGATGCGCAAGCTGGGG
770 AAACGAGCG-T---GCG------G-GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * *
21336618 ATCGGCCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCTTCGGTCCT-GTCTGAT
824 ATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCGGT-CTGGTCCGAT
* ** *
21336681 CTTCGACAAGGAATGAACTCCGTATGCCTCAGCCAACCGATGAAACGAGCGGGCGAGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGAGCGGGCGGG
* * * * *
21336746 CACTACGACGGCCAGAGAGACGAGAAGCGCATGCCGTGGATCGAGAGTGTGGTAAGTGGGTTTAG
66 CACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAG
* * * * *
21336811 GCGCATCTTCATATTTCTATGTGCCAAAGCCACTTTTATGGCTTGAAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
21336876 TTAAGTCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
21336941 ATTTTGTGGTTCGGGATTGTTTAAATTTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGGTAGACG
261 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
21337006 TGATCCTTGTATTTTTGTGGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
* *
21337071 TTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACT-AGCAGCAAACTTG
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGA-CAGCAAACCTG
*
21337135 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTAT-TTGAGGGAT-AGGGGCCA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT-TGATGAGGGATAAGGGGCCA
* * *
21337198 ATATAAGGGCAAAGTACCAGCACCCATTGCACATCATGTGCGTACACCCCCTCGGCCCCCTCGAT
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACCCCCCCGGCCCCC-CGAT
* ** ** * * *
21337263 CGTCGGAACCCCAATACCACCGCTTAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGATGAA
581 CGTCCGAACCCCAATGTCGTCGCTCAAGTTCT----C-A------GACGATGGTGCCCCGATGAA
*
21337328 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTG
635 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTG
*
21337393 ATGTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
700 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * *
21337458 CCACGAAACGAGCATGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGT
765 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* ** * ** * * * * ** * *
21337523 CAGGTCCCTCGATACGTGCTATCAATCCTTCTACCGTAACCCTCAATTTGGTCCAAT
830 CAGGTCCCCCTCTGCGTGCTGCCGATCCTACTACTGCAACCCTCGGTCTGGTCCGAT
* * * * * *
21337580 CTTAGATTGGGAATGAATTCCGTATGCCTAAGCCAACCGAAG-AA--A-----TGATCGGGCTGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGAGCGGGCGGG
* * * *
21337637 CACTACGCCGGCCGGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAG
* * * *
21337702 GTACATCTTCAGATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
21337767 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-AAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-
*
21337831 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTGGTAGAC
260 CTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
21337896 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAAATCAAGGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
* * * *
21337961 TTTGTGAACATTTGAAAAAAGTGTCCTCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTG
* *
21338026 TAAAATCTCAAATGCTCTTTAAGGGGGTGGGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAA
** *
21338091 TATAAGGGCCAAGTACCAGCACCCATCGCACATCAAATGCGCAGCCCCCCGGCCCCCCGATCGTC
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCCCCCCGATCGTC
*
21338156 GGAACCCCAATGTCG
585 CGAACCCCAATGTCG
21338171 CCAGTCAGCC
Statistics
Matches: 2088, Mismatches: 254, Indels: 118
0.85 0.10 0.05
Matches are distributed among these distances:
889 20 0.01
890 18 0.01
891 405 0.19
892 45 0.02
894 143 0.07
895 4 0.00
896 2 0.00
897 1 0.00
898 12 0.01
899 451 0.22
900 130 0.06
901 69 0.03
902 404 0.19
903 79 0.04
904 8 0.00
905 59 0.03
906 85 0.04
907 3 0.00
909 1 0.00
910 149 0.07
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGAGCGGGCGGG
CACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGGGTTTAG
GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCGGCCCCCCGATCGTCC
GAACCCCAATGTCGTCGCTCAAGTTCTCAGACGATGGTGCCCCGATGAAGAAAAATACGGCACCA
GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAAT
GAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGCG
TGCTGCCGATCCTACTACTGCAACCCTCGGTCTGGTCCGAT
Found at i:21337425 original size:26 final size:26
Alignment explanation
Indices: 21337396--21337447 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
21337386 CGGTCTGATG
21337396 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
21337422 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
21337448 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:21339938 original size:26 final size:26
Alignment explanation
Indices: 21339909--21339959 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21339899 GATCTGATCG
* *
21339909 TAGATTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
21339935 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
21339960 CTAAGTCCAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:21340169 original size:892 final size:891
Alignment explanation
Indices: 21338211--21343215 Score: 5274
Period size: 901 Copynumber: 5.6 Consensus size: 891
21338201 GCATGTGGGA
* * * *
21338211 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-AGCCTGGTCCCCTTCTACGTGCT
1 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCT
* * * * * * *
21338275 ACCAATCATGCTACCGCAACCCTCGATCCT-GTCTAATCTTAGATTGGGAATGAACTCCGTATGC
65 ACCGATCCTGCTGCCACAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
21338339 CTAAGCCAACCGACGAAACGAGCGGACGGGTGGACGGGCGGGCACTACGCCGGCCAGAGAGACGA
129 CTAAGCCAACCGACGAAACGAGTGGGCGGGTGGACGGGCGGGCACTACGTCGGCCAGAGAGACGG
* *
21338404 GATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTCTACGTG
194 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
*
21338469 CCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
259 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* ** * *
21338534 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTGCGG-TCGGGATTTTTTT
324 TGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTA
* *
21338598 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
389 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTTGCA
* * *
21338663 TGCACAAAAAAATTCAGCTCAAAACTCGAAGTGTACAACATTTTGAGACCATTTGAAAAAAGTGT
453 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * *
21338728 CTCCATTTTAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATATCAAATGCTCTTTAAGG
518 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
21338793 GGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATTTAAGGGCCAAGTGCCAGCACCC
583 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC-----AA-GG---AGTACCAGCACCC
* * * *
21338858 ATCGCACATCATGTGCGTACACCCCCCCCGGTCCCCCCGATCATCGAAACCCCAATGCCGCC-GA
639 ATCTCACATCATGTGCG--CACACCCCCCGG-CCCCCCGATCACCGGAACCCCAATGCCGCCAG-
* * *
21338922 TCAGGTTCTCTAGCGATGCTCCGACGATAGTG-CCCTGGCGAAGAAAAATGCGGCACCAGCACAT
700 TCAGGTTCTCGA-CGATGCTCCGACGATGGTGTCCC-GGTGAAGAAAAATGCGGCACCAGCACAT
* * *
21338986 GCCCGAGACCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
763 GCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTC
* * * *
21339051 CGTATGCTTAGACT-GG---G-A------A-GCCTAAGTTAACACACGAAACGAGAGTGCGGGC
828 TGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * *
21339103 GCTCAGCCGGCCAGAGAGGCGGGATGCACAACCCGGGGATTGGTCGGGTCCCCCTCTGCATGCTA
1 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTA
* * * * *
21339168 CCGATCTTGCTGCCACAACCCTTGGTCTGCTCTGATCTTAGACTGGGAATGAACTCTGTAAGCCT
66 CCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** * * *** *
21339233 AAGCCAACCGACAAAATGAGCAGGTGGGCGGGTAGGCAGGCACTACGTCGGCCAGAGAGACGGGA
131 AAGCCAACCGACGAAACGAGTGGGCGGGTGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
*
21339298 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTACGTGCC
196 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
21339363 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
261 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * ** * *
21339428 GCAATACGACTCATTTTCTATTTTTCATAATTTTTGAAACTTTATGCAATTTGGGATTTTTTAGA
326 GCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA
** * * *
21339493 ATTTTTTCAGAAGGAGTTTTACCCCCAAACTAGGTAGACATGATCCTTGTATTTTTGTTTCCATG
391 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTTGCATG
* * *
21339558 CACAAAAAATTTCAGCTAAAAACTCGAAGTGTACATGATTGTGTGACCATTTGAAAAAAGTGTCC
455 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * *
21339623 CCA-TTCAGACACTTCAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
520 CCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
21339687 GTGTGAGTTCTTGAGGTTTGATGAGGTATAGGGGGCC-A-G-GTACCAGCACCCATCTTACATCA
585 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAGGAGTACCAGCACCCATCTCACATCA
* *
21339749 TGTGCGCACACCCCCCGG-CCCCCGATCACCGGAACCCCAATGCCGACAGTCAGGTTCGTCGATG
650 TGTGCGCACACCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCAGTCAGGTTC-TCGACG
* * * * *
21339813 ATGCTCCGACGATGGTGTCTCAGTGAAGAAAAATGCAGCACCAGCGCATGCTCGAGCCCAGCATG
714 ATGCTCCGACGATGGTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
** * * * *
21339878 TGCTGCTGCAACCCTCGATCCGATCTGATCGTAGATTGGGAATGAACTCTGTATGCTTAGACTGG
779 TGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGG
* * * *
21339943 GAATGAACTCCGTATGCCTAAGTCCACCCACGAAATGAGCATACGGGC
844 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* *
21339991 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATCGAGTCCCCCTCTGCGTGCTA
1 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTA
*** * *
21340056 CCGATCCTGCTGCTGTAATCCTCGGTCTGGTCTGATTTTAGACTGGGAATGAACTCCGTATGCCT
66 CCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* ** * *
21340121 AAGCGAATGGACGAAATGAGTGGATGGGCGGGCTGG-CGGGCGGGCACTACG-CTGGCTAGAGAG
131 AAGCCAACCGACGAAACGA---G-TGGGCGGG-TGGACGGGCGGGCACTACGTC-GGCCAGAGAG
* *
21340184 ATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCCTATTTCTA
190 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA
* * * *
21340249 CATGCCAATGCCATTTTAACGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
255 CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
* * * **
21340314 TTCATGGCAAGACGGCT--TTTGAAACTATTTTTCATAATTTTTGAAACTTTTGGCCCAAACTTC
320 TTCATGGCAAGACGACTCGTTT---TCTATTTTTCATAATTTTTGAAACTTTTTG--C--GGTTC
* * ** * ** * *** *
21340377 GTAGACGTGATCCTTGT-ATTTTTATTGGCATCCACAAAAAAATTTT-GCTAAAAAC-TCG-A-A
378 ---G--G-GAT-TTTTTAAAATTT-TT----T-CA-GAAGGAGTTTTGGCCCCAAACTTGGTAGA
* ** * *** *** * ** ** *
21340437 -GTG-TAC-AATATTTTGTGACCAT-TTGAAAAAAGTGTC--C--CCATTTC--A--G-AC-A-C
429 CGTGATCCTTGTATTTTTTTTGCATGCACAAAAAAAT-TCAGCTAAAAACTCGAAGTGTACAAGA
* * * * * ** * * ** *** ***
21340487 TTTAGTGGCTACTGGCAGCAAA------CC--TGTA-AAATCTCAAAT-GCT-CTTTAAG--GGG
493 TTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTTAGACA-CTTTAATGGCTACTGGCAGCAAAC
* * ** * * * * * * ** ** *
21340539 GTGTGAGTTCTC-GA-GGT-TTGATGAGGG-AT-AG-----G-GG---G-CCA-ATATA-AGGGC
556 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
* ** * **
21340587 C-A--AGTACGAGCACCCATGGCACATCATGTGTGTACACCCACCCCCCGGCCCCTCCGATCGTC
621 CAAGGAGTACCAGCACCCATCTCACATCATGTGCG--CA--CACCCCCCGGCCCC-CCGATCACC
* * * * *
21340649 AGAACCCAAATGCCGCCGGTCA-GTTCTC--CGA---T-----GATGATGCCCCGGTGAAGAAAA
681 GGAACCCCAATGCCGCCAGTCAGGTTCTCGACGATGCTCCGACGATGGTGTCCCGGTGAAGAAAA
* * * * * * * *
21340703 ATACGGAACCAGCACATGCTCGAACCCAGCATGTGCTGCCGCAACCTTCGGTCTGGTCCGATCTT
746 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTT
*
21340768 AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
811 AGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
** *
21340833 AAACGAGCGTGCATGT
876 AAACGAGCGTGCGGGC
* * * **
21340849 GCTCAGCCAGCCAGTA-GGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCTACCTCTGCGTGCT
1 GCTCAGCCGGCCAG-AGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCT
** *** * * ** * *
21340913 GTCGATCCTGCTGTTGCAAGCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCC
65 ACCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * * * * *
21340978 TAACCCAACCGACGAAATGAGCGGGCGGGCGGGCGGTCGGGCACTACGCCGACCAAAGTGATGGG
130 TAAGCCAACCGACGAAACGAGTGGGCGGGTGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGG
**
21341043 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGC
195 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGC
* * * *
21341108 CAATGCTTATTTTT-TGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTTACGTGAACTTTCA
260 CAATGC-CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * *
21341172 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGTAATTTTTTGGGGTTCAGGATTTTTTA
324 TGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTA
** *
21341237 AAATTTTTTTGGAAGGAGTTTTGGCCCCAATCTTGGTAGACGTGATCCTTGTATTTTTTTTGTCA
389 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTG-CA
* *
21341302 TGCAAAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
453 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
21341367 CTCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
518 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
21341432 GGGTGTGTGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
583 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC-----AA-GG---AGTACCAGCACCC
* * * * * * * *
21341497 ATCGCGCATGATGTGTGCACA-CCCCCGGCCCCCCGATCGCTGGAACCCCTATGTCGCCAGTCAG
639 ATCTCACATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCAGTCAG
* *
21341561 GTTCTCTGGCGATGCTCCGACGATGG-GTCCCCGGTGAAGAAAAATGCGGCACCAGTACATGCCC
704 GTTCTC-GACGATGCTCCGACGATGGTGT-CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCC
* * *
21341625 GAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTA
767 GAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTA
* *
21341690 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGTGC
832 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * * *
21341750 GCTTAGTCAGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGTCGGGTCCCCCTCTGAGTGCTG
1 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTA
* * * * **
21341815 CCGATCCTGCTACCACAACCCTCGGTCCGGTCTGATCTTAGACTGAGAATAAACTGTGTATGCCT
66 CCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * *
21341880 AAGCCAACTGACGAAACGAGCGGGCGGGCGGCCAGGCGGGCACTGCGTCGGCTAGAGAGACGGGA
131 AAGCCAACCGACGAAACGAGTGGGCGGGTGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
* * * * *
21341945 TGCGTAAGCCGTGGATCGATATGGTGGTAGGTGGATTTAGGCACATCTTTATATTTC-AGCATGC
196 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CGTGC
* *
21342009 CAATGCCATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCAT
260 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * **
21342074 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGGGGTTCAAGATTTTTTAA
325 GGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAA
** * *
21342139 AATTTTTTTGGAAGGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATGTTTTTTGGCAT
390 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT-TTTTTTTGCAT
* * * * * *
21342204 GCACATAACAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTATC
454 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
21342269 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGAG
519 CCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
21342334 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
584 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC-----AA-GG---AGTACCAGCACCCA
* * * * * * *
21342399 T-TGCACATCATGTGCGCACACCCCCTGGCCCCCCGATCGCCAGAACCCTATTACTGCCAGTCAG
640 TCT-CACATCATGTGCGCACACCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCAGTCAG
* * *
21342463 GTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCACATGCCCG
704 GTTCT-CGACGATGCTCCGACGATGGTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCG
* ** * *
21342528 AGCCCAGCATGTGCTACCTTAACCCTCTGTCCGATCCGATCTTATACTGGGAATGAACTCTGTAT
768 AGCCCAGCATGTGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTAT
* * * * * * *
21342593 GCTAAGATTGGGAATGAACTTCGTATGCCTAAGTCAACACACAAAACGAGTGTGCGGGT
833 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *
21342652 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CTGGGTCCTCTTTTGTGTGCT
1 GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCT
* * * * *
21342716 GCCGATCCTGCTGCCACAACCATTGGTGC-GGTCCGATCTTAGACTGGGAATGAACTCCATATGC
65 ACCGATCCTGCTGCCACAACCCTCGGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
21342780 CTAAGCCAACCGACGAAACGAGTGGGCGGGTGGACGGGCGGGCACTACGTCGGCCAGAGAGACGG
129 CTAAGCCAACCGACGAAACGAGTGGGCGGGTGGACGGGCGGGCACTACGTCGGCCAGAGAGACGG
* * * *
21342845 GATTCGCAAGCCTTGGATCGATAGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTG
194 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
*
21342910 CCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
259 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* *
21342975 TGGCAAGACGACTCGTTTTATATTTTTCATAATTTTAGAAACTTTTTGCGGTTCGGGATTTTTTA
324 TGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTA
* * * *
21343040 AAATTTTTTTAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAGCCTTGTATTTTTTTTGGAA
389 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT-GCA
*
21343105 TGCACAAAAAAATTCAGCTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
453 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
21343170 CCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAA
518 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
21343216 CCGATGAAGA
Statistics
Matches: 3420, Mismatches: 544, Indels: 288
0.80 0.13 0.07
Matches are distributed among these distances:
836 7 0.00
837 5 0.00
838 3 0.00
839 1 0.00
840 1 0.00
841 3 0.00
842 7 0.00
843 14 0.00
844 6 0.00
845 7 0.00
846 1 0.00
848 3 0.00
849 3 0.00
850 1 0.00
852 1 0.00
853 29 0.01
854 161 0.05
855 17 0.00
856 3 0.00
858 268 0.08
859 1 0.00
860 2 0.00
862 8 0.00
863 6 0.00
864 34 0.01
865 4 0.00
866 13 0.00
867 2 0.00
868 14 0.00
869 14 0.00
870 28 0.01
871 2 0.00
876 146 0.04
877 11 0.00
878 18 0.01
879 2 0.00
880 29 0.01
881 9 0.00
882 3 0.00
883 9 0.00
884 6 0.00
885 7 0.00
886 3 0.00
887 1 0.00
888 153 0.04
889 25 0.01
890 20 0.01
891 15 0.00
892 584 0.17
893 167 0.05
894 1 0.00
895 27 0.01
896 2 0.00
897 3 0.00
898 3 0.00
900 10 0.00
901 748 0.22
902 707 0.21
903 15 0.00
904 7 0.00
905 2 0.00
906 1 0.00
907 1 0.00
908 2 0.00
909 7 0.00
910 7 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTA
CCGATCCTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCGACGAAACGAGTGGGCGGGTGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA
ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGCATGC
ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAAGGAGTACCAGCACCCATCTCACATCAT
GTGCGCACACCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCGACGAT
GCTCCGACGATGGTGTCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
Found at i:21340794 original size:26 final size:26
Alignment explanation
Indices: 21340765--21340817 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21340755 CTGGTCCGAT
21340765 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21340791 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21340817 C
1 C
21340818 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21341695 original size:26 final size:26
Alignment explanation
Indices: 21341666--21341718 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21341656 CCGGTCCGAT
21341666 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
21341692 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21341718 C
1 C
21341719 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21342611 original size:26 final size:27
Alignment explanation
Indices: 21342575--21342625 Score: 79
Period size: 26 Copynumber: 1.9 Consensus size: 27
21342565 GATCTTATAC
21342575 TGGGAATGAAC-TCTGTATG-CTAAGAT
1 TGGGAATGAACTTC-GTATGCCTAAGAT
21342601 TGGGAATGAACTTCGTATGCCTAAG
1 TGGGAATGAACTTCGTATGCCTAAG
21342626 TCAACACACA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
26 16 0.70
27 7 0.30
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (27 bp):
TGGGAATGAACTTCGTATGCCTAAGAT
Found at i:21344186 original size:26 final size:26
Alignment explanation
Indices: 21344157--21344209 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21344147 CCAGTCCGAT
21344157 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21344183 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21344209 C
1 C
21344210 CAAAGTCAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21345205 original size:159 final size:159
Alignment explanation
Indices: 21344911--21345271 Score: 436
Period size: 159 Copynumber: 2.3 Consensus size: 159
21344901 TCCGTATGCC
* * ** * *
21344911 TAGATTGGGAATGAACACCGTATGCCTAAGTTAACCCATAAAATGAGCATACGGGCACTCAGCCG
1 TAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAAGGAACATACGGGCACTCAGCCG
* * * *
21344976 ACCAGAGAGGTAGGATGTGCAAGACGGGGATCGGTTGGGTCCCCCTCTGTGTCCTACCGATCTTG
66 ACCAGAGAGGTAGGATGCGCAAGACGAGGATCGATTGGGTCCCCCTCTGTGTCCTACCGATCCTG
* * *
21345041 CTGTCGGAACCCTCGGTCTGATTCGATCT
131 CTGTCGCAACCCTCAGTCTGATCCGATCT
* * * *
21345070 TAGACTGGGAATGAACCCCGTATGCCTAAGTCAACCCACGAAAGGAACGTTCGGGCGCTCAGCCG
1 TAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAAGGAACATACGGGCACTCAGCCG
* * * * * * *
21345135 GCCATAGGGGTGGGATGCGTAAGTCGAGGATCGATTGGGTCCCCCTCTGTG-CACTGCCGATCCT
66 ACCAGAGAGGTAGGATGCGCAAGACGAGGATCGATTGGGTCCCCCTCTGTGTC-CTACCGATCCT
* *
21345199 GCTGTCGCAACCCTCAGTCTGGTCCTATCT
130 GCTGTCGCAACCCTCAGTCTGATCCGATCT
* * * *
21345229 TAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
1 TAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAA
21345272 TGAGCGGGTG
Statistics
Matches: 171, Mismatches: 30, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
158 1 0.01
159 170 0.99
ACGTcount: A:0.24, C:0.27, G:0.27, T:0.22
Consensus pattern (159 bp):
TAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAAGGAACATACGGGCACTCAGCCG
ACCAGAGAGGTAGGATGCGCAAGACGAGGATCGATTGGGTCCCCCTCTGTGTCCTACCGATCCTG
CTGTCGCAACCCTCAGTCTGATCCGATCT
Found at i:21345971 original size:26 final size:26
Alignment explanation
Indices: 21345942--21345993 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21345932 TGATCCAATT
* *
21345942 TTAGACTGGGATTGAACTCTGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
21345968 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
21345994 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:21346327 original size:159 final size:157
Alignment explanation
Indices: 21345967--21346333 Score: 439
Period size: 158 Copynumber: 2.3 Consensus size: 157
21345957 ACTCTGTATG
* * *
21345967 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAGT
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTACGGACACTCAGC
* * *
21346032 CGGCCAGAAGGGCGGGATGTGCAAGACGGGGATCGGTCAGGCCCCCCATGCATGCTGCCAATCCT
65 CGACCAGAAGGGCGGGATGAGCAAGACGAGGATCGGTCAGGCCCCCCATGCATGCTGCCAATCCT
** **
21346097 GCTGCCGTAACCCTCGGTCCAGTCCGAT
130 GCTGCCACAACCCTCAATCCAGTCCGAT
* * * *
21346125 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCTGACGCTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTACGGACACTCAGC
** * * * * *
21346190 CGACCAGTGGGGCGGGATGAGCAAGCCGAGGATCGGTCGGGTCCCCCTC-TGCGTGCTGTCGATC
65 CGACCAGAAGGGCGGGATGAGCAAGACGAGGATCGGTCAGG-CCCCC-CATGCATGCTGCCAATC
*
21346254 CTGCTGCCACAACCCTCAATCCGGTCCGAT
128 CTGCTGCCACAACCCTCAATCCAGTCCGAT
* * * * *
21346284 CTTAGACTGGAAATTAACTCCATATGCCTAAGCCAATCGACGAAACGAGC
1 CTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGC
21346334 AGGCGGGCGG
Statistics
Matches: 177, Mismatches: 29, Indels: 5
0.84 0.14 0.02
Matches are distributed among these distances:
158 93 0.53
159 83 0.47
160 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.18
Consensus pattern (157 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTACGGACACTCAGCC
GACCAGAAGGGCGGGATGAGCAAGACGAGGATCGGTCAGGCCCCCCATGCATGCTGCCAATCCTG
CTGCCACAACCCTCAATCCAGTCCGAT
Found at i:21347035 original size:26 final size:26
Alignment explanation
Indices: 21347006--21347058 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21346996 TCGGTCCCAT
* *
21347006 CTTAGACTGGGAAAGAATTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
* *
21347032 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
21347058 C
1 C
21347059 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:21348133 original size:904 final size:906
Alignment explanation
Indices: 21346134--21349443 Score: 4729
Period size: 900 Copynumber: 3.6 Consensus size: 906
21346124 TCTTAGACTA
* * * *
21346134 GGAATGAACTTCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCTGACGCTCAGCCGACCAGTG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGACCAGAG
* * * * * *
21346199 GGGCGGGATGAGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCAC
66 AGGCGGGATGTGCAAGCCGAGGATCGGCCGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGC
** ** * * * *
21346264 AACCCTCAATCCGGTCCGATCTTAGACTGGAAATTAACTCCATATGCCTAAGCCAATCGACGAAA
131 AACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * * * * *
21346329 CGAGCAGGCGGGCGGGCGGGCGGGCGAGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGTCGT
196 C--G-A-GCGGGCGGGCGGACGGGCGGGCACTACGCCTGCCAGAGAGACGGGATGCGAAAGCCGT
* * *
21346394 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTACCAATGCCATTTTT
257 GGATCGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* * ** *
21346459 ATGGCTTGTAAATTCATACAATGGTCCCTTGGGCTTTCACGTGAAGTTTCATGGCAAGACGACTC
322 ATCGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** * * *
21346524 ATTTTCTATTTTTCATTATTTTTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATCTTTTCGGAA
387 ATTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAA
* *
21346589 GGATTTTTGGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAAT
452 GGATTTTTGG-CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
21346654 TTAGCTAAAAACTCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
516 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
21346719 ACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
581 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
21346784 CAAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATG
646 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
21346849 TGCGCACACCCCCGACCCCCCCGATCGTCGGAACGCCAATGCCGCCGGTCAGGTTCTCCGACGA-
711 TGCG--CA---CC-ACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * * *
21346913 ----TGC--T--TC-GGTGATGGTGCCCTGGCGAAGAGAAATGCGGCACCAGCACATGCCCGAGC
770 GCTCTGCTATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* * * * * *
21346969 CCAGCATGTGCTG-CTGCAACCCTCGGTTCGGTCCCATCTTAGACTGGGAAAGAATTTCGTATGC
835 CCAGCATGTGCTGTC-GCAACCCTCGGTACGGTCCGATCTTAGACTGGGAATGAAATTCGTAAGA
21347033 TTAGATTG
899 TTAGATTG
* *
21347041 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGTGCGGGCGCTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGACCAGAG
* * * * * *
21347106 AGGTGGGATGTGCAAGTCGGGGATCGGCCGAGTCCCCCTCTATGTGCTGTCGATCCTGCTACTGC
66 AGGCGGGATGTGCAAGCCGAGGATCGGCCGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGC
* *
21347171 AACCCTTGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
131 AACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
21347236 CGAGCGGGTGGGCGGACGGGTGGGCACTACGCCTGCTAGAGAGACGGGATGCGAAAGCCGTGGAT
196 CGAGCGGGCGGGCGGACGGGCGGGCACTACGCCTGCCAGAGAGACGGGATGCGAAAGCCGTGGAT
* * * *
21347301 CGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGTCAATTCCTTTTTTATCG
261 CGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATCG
*
21347366 CATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
326 CATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
*
21347431 TCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGGGA-TTTTTAAAATTTTTTCAGAAGGAT
391 TCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAT
* *
21347495 TTTTGGCCCAAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCTTGCA-AAAAAAATTCAGC
456 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
21347559 TAAAAACTCGAAGTGTACAAGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
521 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * * *
21347624 AATGGTTACTGGCAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCTCAGGG
586 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
* *
21347689 TTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGTGTGCGC
651 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
21347754 A-CACCCCCCCGATCG-CTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCTA
716 ACCACCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCT-GCTA
*
21347817 TGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGGATGT
779 TGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
**
21347882 GCTGTCGCAACCCTCGGTAATGTCCGATCTTAGACTGGGAATGAAATTCGTAAGATTAGATTG
844 GCTGTCGCAACCCTCGGTACGGTCCGATCTTAGACTGGGAATGAAATTCGTAAGATTAGATTG
* ** * *
21347945 GGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCCAACGTTCAGCCGGCCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGACCAGAG
* * * *
21348010 GGGCGGGATGCGCAAGCCGAGGATCGGCCGAGTCCCCCTCTACGTGCTATCGATCCTGCTGCCGT
66 AGGCGGGATGTGCAAGCCGAGGATCGGCCGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGC
* ** * *
21348075 AACGCTCGGTCT-GATTTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACAAA
131 AACCCTCGGTCTAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * * *
21348139 ATGAGCGGGCGGGC--A--GGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGA
195 ACGAGCGGGCGGGCGGACGGGCGGGCACTACGCCTGCCAGAGAGACGGGATGCGAAAGCCGTGGA
* *
21348200 TCGATAGGGTGGTCA-GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
260 TCGATAGGGTGG-GAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
* * * * *
21348264 GGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
324 CGCATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
* **
21348329 TTTCTATTTTTCATGATTTTCGAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCA-AAG
389 TTTCTATTTTTCATGATTTTC-AAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAAG
* ** * ** * *
21348393 GAGTTTTGGCTGCAAAGTTGGTAGATGTGATCCTTGTATATTTGTTGGCATGCACACAAAAATTC
453 GATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
21348458 AGCTAACAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
518 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
21348523 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
583 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
*
21348588 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTA
648 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-
* * * * *
21348653 CGCGCACCCCCCCGGCCCCCAAGATCGTCGGAACCCCAATGTCGTCGGTCAAGTTCTCCGGTGAT
712 -GCGCA--CCACC--CCCCC--GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* *
21348718 GCTCTAGCTATGCTCTGGCGATGGTGCCCCAACGAAGAAAAATGCGGCACTAGCACATGCCCGAG
770 GCTCT-GCTATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
21348783 CCCAGCATGTGCTATCGCAACCCTCGGTACGGTCCGATCTTAGACTGGGAATAAAATTCGTAACA
834 CCCAGCATGTGCTGTCGCAACCCTCGGTACGGTCCGATCTTAGACTGGGAATGAAATTCGTAAGA
21348848 TTAGATTG
899 TTAGATTG
* *
21348856 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGATCGTGCGGGCGCTCAGCCGACCAGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGACCAGAG
* * * * *
21348921 AGGTGGGATGTGCAAGTCGGGGATCGGCCGAGTCCCCCTCTATGTGCTGTCGATCCTGCTGCTGC
66 AGGCGGGATGTGCAAGCCGAGGATCGGCCGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGC
* *
21348986 AACCCTTGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
131 AACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
* * *
21349051 CGAGCGGGTGGGCGGACGGGTGGGCACTACGCCTGCTAGAGAGACGGGATGCGAAAGCCGTGGAT
196 CGAGCGGGCGGGCGGACGGGCGGGCACTACGCCTGCCAGAGAGACGGGATGCGAAAGCCGTGGAT
* * * *
21349116 CGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGTCAATTCCTTTTTTATCG
261 CGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATCG
*
21349181 CATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTT
326 CATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
* ** * * * *
21349246 TTTATTTTTCATGATTTTTGAAACTTTTTGAGGTTTGGGATTTTTTAAAATTCTTTCGGAAGGAT
391 TCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAT
*
21349311 TTTTGGCCCCAAACTTCGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
456 TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * *
21349376 TACAAACTCGAAGTGTACAAGATTTTGTGACCATTTGATAAAAGTGTCCCCATTTTAGATACTTT
521 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
21349441 AAT
586 AAT
21349444 ACCCATCACA
Statistics
Matches: 2137, Mismatches: 231, Indels: 62
0.88 0.10 0.03
Matches are distributed among these distances:
892 1 0.00
893 46 0.02
894 1 0.00
898 3 0.00
899 2 0.00
900 372 0.17
901 110 0.05
902 239 0.11
903 208 0.10
904 293 0.14
905 2 0.00
907 171 0.08
909 5 0.00
911 347 0.16
912 2 0.00
913 1 0.00
914 33 0.02
915 301 0.14
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (906 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGACGCTCAGCCGACCAGAG
AGGCGGGATGTGCAAGCCGAGGATCGGCCGAGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGC
AACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGCGGACGGGCGGGCACTACGCCTGCCAGAGAGACGGGATGCGAAAGCCGTGGAT
CGATAGGGTGGGAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATCG
CATGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
TCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAT
TTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACCACCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGCTATG
CTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGTCGCAACCCTCGGTACGGTCCGATCTTAGACTGGGAATGAAATTCGTAAGATTAGATTG
Found at i:21350511 original size:26 final size:26
Alignment explanation
Indices: 21350482--21350534 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21350472 CTGATCTAAT
* *
21350482 CTTATACTGGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATGAACTTC-GTATG
21350508 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
21350534 C
1 C
21350535 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:21351215 original size:879 final size:878
Alignment explanation
Indices: 21349705--21351440 Score: 2605
Period size: 879 Copynumber: 2.0 Consensus size: 878
21349695 GCGGGTTGTG
* * *
21349705 CAAGCCGGGGATCGGTCGGGTCCCCCTCTGAATGCTACCGATCCTACTGCCACAACCCTCGGTCT
1 CAAGCCGGGGATCGATCGGGTCCCCCTCTGAATGCTACCGATCCTACTGCCACAACCCTCGATCG
* *
21349770 AGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGAGCGGG
66 AGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAGCGAGCGGG
* *
21349835 TGGCGGACGAGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCGTGGATCGATAGGCTGCTAG
131 TGGCGGACGAGCACTACGTCGGCCAAAGAGACGGGATGCACAAGCGTGGATCGATAGGCTGCTAG
* * *
21349900 GTGGGTTTAGGCACATCTTTATATTTCTACGTGCCAATGCCATTTTTACAGCTTGTAAATTCATA
196 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTACAGCTTCTAAATTCATA
* * * *
21349965 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGA
261 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAA
*
21350030 TTTTTGAAACTTTTTGGGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAAC
326 TTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAAC
* *
21350095 TTGGTAGACGTGATCCTTGTATTTTTGTTTGGATGCACAAAAAAATTCAGCTAAAAACACGAAGT
391 TTGGTAGACGTGATCATTGTATTTTTGTTTGGATGCACAAAAAAAGTCAGCTAAAAACACGAAGT
* *
21350160 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCA
456 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCA
* *
21350225 GCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATA
521 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGAGATA
*
21350290 GGGAGCCAATATAAGGGCCAAGTACCAGAACCCATCACACATCATGTGCGCACACCC-CCTGGCC
586 GGGAGCCAATATAAGGCCCAAGTACCAGAACCCATCACACATCATGTGCGCACACCCTCC-GGCC
** *
21350354 CCTTGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGATGAAGAAA
650 CCCCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAA
* * *
21350419 AATGTGGCACCAACACATGCCCGAG-CCTAGCATGTGCTACCGCAACCCACGGTCTGATCTAATC
715 AATGTGACACCAACACATGCACGAGTCC-AGCATGTGCTACCGCAACCCACGGTCTGATCCAATC
* * * * * * *
21350483 TTATACTGGGAATGAA-CTCTGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTTAACCC
779 TTAGACTAGGAATGAACCTC-ATACGCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCC
21350547 ACGAAACGAGAGTGCAGGCCAGATGGGCAGGATGCT
843 ACGAAACGAGAGTGCAGGCCAGATGGGCAGGATGCT
* ** * *
21350583 CAAGCCGGGGATCGATCGGGTCCCCCTCT-ATGTGCTGTCGATCTTGCTGCCACAACCCTCGATC
1 CAAGCCGGGGATCGATCGGGTCCCCCTCTGA-ATGCTACCGATCCTACTGCCACAACCCTCGAT-
* **
21350647 CGA-TCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGACG
64 CGAGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAGC-GA--
*
21350711 TGCGGGCTGGCGGGCG-GCACTACGTCGGCCAAAGAGACGGGATGCACAAGCCGTGGATCGATAG
126 -GCGGG-TGGCGGACGAGCACTACGTCGGCCAAAGAGACGGGATGCACAAG-CGTGGATCGATAG
* * * * **
21350775 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTCTA
188 GCTGCTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTACAGCTTCTA
21350840 AATTCATACAATGGTCCC-T-A-CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
253 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * *
21350902 TTTCATAATTTTTGAAACTTTTTGCGGTT-TGGAATTTTTTAAAATTTTTTTGGAGGGAGTTTTG
318 TTTCATAATTTTTGAAACTTTTTGCGGTTCAGG-ATTTTTTAAAATTTTTTTGAAAGGAGTTTTG
* *
21350966 GCCCCAAACTTGGTAGACGTGATCATTGTATTTTTG-TTGGCATGCA-TAAAAAAGTCAGCTAGA
382 GCCCCAAACTTGGTAGACGTGATCATTGTATTTTTGTTTGG-ATGCACAAAAAAAGTCAGCTAAA
*
21351029 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATG
446 AACACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATG
21351094 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTG
511 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTG
* * * *
21351159 ATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
576 ATGAGAGATAGGGAGCCAATATAAGGCCCAAGTACCAGAACCCATCACACATCATGTGCGCACAC
* ** * *
21351224 CCTCCGGCCCCCCGATCGTCGGAACCTCAATGCCGTCGGTCTGGTTCTCCGGTGATGGTGTCTCG
641 CCTCCGGCCCCCCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCG
* * * **
21351289 ACGAAGAAAAATGTGACACCAGCACATGCATGAGTCCAGCATGTGCTGCCGCAACCCTTGGTCTG
706 ACGAAGAAAAATGTGACACCAACACATGCACGAGTCCAGCATGTGCTACCGCAACCCACGGTCTG
* *
21351354 GTCCAATCTTAGACTAGGAATGAACCTCATACGCTTAGACTGGGAATAAACTCCGTATGCCTAAG
771 ATCCAATCTTAGACTAGGAATGAACCTCATACGCTTAGACTAGGAATAAACTCCGTATGCCTAAG
* *
21351419 TCAACCCATGAAACGAGCGTGC
836 TCAACCCACGAAACGAGAGTGC
21351441 GGGCGCTCAG
Statistics
Matches: 771, Mismatches: 74, Indels: 25
0.89 0.09 0.03
Matches are distributed among these distances:
877 1 0.00
878 105 0.14
879 389 0.50
880 142 0.18
881 1 0.00
882 38 0.05
883 95 0.12
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (878 bp):
CAAGCCGGGGATCGATCGGGTCCCCCTCTGAATGCTACCGATCCTACTGCCACAACCCTCGATCG
AGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAGCGAGCGGG
TGGCGGACGAGCACTACGTCGGCCAAAGAGACGGGATGCACAAGCGTGGATCGATAGGCTGCTAG
GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTACAGCTTCTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAA
TTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAAC
TTGGTAGACGTGATCATTGTATTTTTGTTTGGATGCACAAAAAAAGTCAGCTAAAAACACGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGCTCTCGAGGTTTGATGAGAGATA
GGGAGCCAATATAAGGCCCAAGTACCAGAACCCATCACACATCATGTGCGCACACCCTCCGGCCC
CCCGATCGTCGGAACCTCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGACGAAGAAAA
ATGTGACACCAACACATGCACGAGTCCAGCATGTGCTACCGCAACCCACGGTCTGATCCAATCTT
AGACTAGGAATGAACCTCATACGCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGAGTGCAGGCCAGATGGGCAGGATGCT
Found at i:21351686 original size:159 final size:158
Alignment explanation
Indices: 21351387--21351755 Score: 447
Period size: 159 Copynumber: 2.3 Consensus size: 158
21351377 ACCTCATACG
* * *
21351387 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCC-AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * * *
21351452 CGGCCAGAGGGGCGGGATGCTCGAGTCGGGGATCAGCTGGGTCCCTCTCTACGTGCTGCTGATCT
65 CAGCCAAAGGGGCAGGATGCGCAAGTCGGGGATCAGCCGGATCCCCCTCTACGTGCTGCTGATCC
*
21351517 TACTGTCGTAACCCTCGGTCCTG-TCTGAT
130 TACTGCCGTAACCCTCGGT-CTGATCTGAT
* * * *
21351546 CTTAGATTGGGAATGAACTTCGAATGCTCAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGC-CAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
21351611 CAGCCAAAGGGGCAGGATGCGCAAGTCGGGGATC-GACCGGATCCCCCTCTGCGTGCTG-TCGAT
65 CAGCCAAAGGGGCAGGATGCGCAAGTCGGGGATCAG-CCGGATCCCCCTCTACGTGCTGCT-GAT
* *
21351674 CCTGCTGCCGTAACCTTCGGTCTGATCTGAT
128 CCTACTGCCGTAACCCTCGGTCTGATCTGAT
* ** *
21351705 CTTAGACTAGGAATGAACTCCGTATGCCAAAACTAACCGACGAAACGAGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCAAGTC-AACCCACGAAACGAGCG
21351756 GGTGGGCAGG
Statistics
Matches: 178, Mismatches: 27, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
158 9 0.05
159 168 0.94
160 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (158 bp):
CTTAGACTGGGAATGAACTCCGTATGCCAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
AGCCAAAGGGGCAGGATGCGCAAGTCGGGGATCAGCCGGATCCCCCTCTACGTGCTGCTGATCCT
ACTGCCGTAACCCTCGGTCTGATCTGAT
Found at i:21355087 original size:26 final size:26
Alignment explanation
Indices: 21355058--21355110 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21355048 CTGGTCCGAT
* *
21355058 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21355084 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21355110 C
1 C
21355111 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21355329 original size:892 final size:890
Alignment explanation
Indices: 21351546--21355656 Score: 5042
Period size: 877 Copynumber: 4.6 Consensus size: 890
21351536 CCTGTCTGAT
* * * *
21351546 CTTAGATTGGGAATGAACTTCGAATG-CTCAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCT-AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * *
21351610 CCAGCCAAAGGGGCAGGATGCGCAAGTCGGGGATCGACCGGATCCCCCTCTGCGTGCTGTCGATC
65 CCGGCCAGAGGGG-GGGATGCGCAAGTCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * * *
21351675 CTGCTGCCGTAACCTTCGGTCTGATCTGATCTTAGACTAGGAATGAACTCCGTATGCCAAAACTA
129 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
21351740 ACCGACGAAACGAGC-G-GGTGGGC-A---GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
194 ACCGACGAAACGAGCAGCGGAGGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
21351799 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
259 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
* * *
21351864 TTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATTGCAAGATG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * *
21351929 ACTCGTTTTCTCTTTTTCACGATTTTCAAAAGTTTATGTA--GTTTGGGATTTTTTTAAACTTTT
389 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTT-T-TACGGTTCGGGATTTTTTAAAATTTTT
** * * *
21351992 TCAAAAAGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
452 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
21352057 GAAGTTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
21352122 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGCTCTTTAAGGGGGTGTGA
582 CAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * ** * * * *
21352187 GTTCTCAAGGTTTGATGAGAGATAGGGGGTGAATATAAGGGTCGAGTTCCAGCACCCATCGTACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
21352252 TCATGTGCGCACACCCCTCCCGGCCCCCCCGATCACCGGAACCCCAATGCCG-TCGATCAGGTTC
712 TCATGTGCGC-CA----------CCCCCCCGATCGCCGGAACCCCAATGCCGCT-GATCAGGTTC
* * *
21352316 TCTGGCGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGTAGCACCAGCACATGCTCGAGCC
765 TCTGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCC
* * *
21352381 CAGCATGTGCAGCCGCAACCCTCGGTCCTATCCGATCTTAGACTAGGAATGAACTCCATATG
830 CAGCATGTGCTGCCGCAACCCTCGGT-CTGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
21352443 CTTAGATTGGGAATGAACTCTGTATGCCAAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
21352508 CGGCCAGAGGGGCGGGATGCACAAGTC-GAAGATCGATCGGGTCCCCCTCTGCATGCTGTCGATC
66 CGGCCAGAGGGG-GGGATGCGCAAGTCAG-GGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * * * *
21352572 CTGCTACAGGAATCCTCGGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
21352637 ACCGACGAAACGAGCGGGCAGAAGG-GA--GGGCACTACGCCAGCCAGAGAGACAGGATGCGCAA
194 ACCGACGAAACGAGC-AGCGGAGGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * ** *
21352699 GCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTACCAATGCCA
258 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
* *
21352764 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACTTGAAGTCTCATGGCAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** *
21352829 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTGGCGGTTCGGGATTTTTAAAAATTTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* * ** * * *
21352894 CGGAGGGGGTTTTGGCCCCAAACTCAGTAGACGTGATCCTTGCACTTTTGTTGGCATGCATAAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
21352959 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
21353024 AGACACTTTAACGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
21353089 TTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGGACCAGCACCCATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
21353154 CATGTGCGCAAACCCCCCGACCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC-G
713 CATGTGCG--------CC-ACCCCCCCGATCGCCGGAACCCCAATGCCGCTGATCAGGTTCTCTG
* * * * * *
21353218 GTGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCAATCCCAGC
769 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGC
*
21353283 ATGTGCTGTCGCAA-CC-C--TC-G---G----T---CT--G---G---TCCA-AT-
834 ATGTGCTGCCGCAACCCTCGGTCTGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * *
21353315 CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAACGAGCGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
21353380 CGACCGGAGTGGCGGGATGCACAAG-CAGGGTATCAACCAGGTCCCCCTTTGCGTGCTGCCGATC
66 CGGCCAGAG-GGGGGGATGCGCAAGTCAGGG-ATCGACCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * *
21353444 TTGCTGCCGCAACCCTTGGTCCGGT-TCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
129 CTGCTGCCGCAACCCTCGGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * * *
21353508 AACTAACGAAACGAGCGGACAGGTA-GGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGGG
193 AACCGACGAAACGAGCAG-C-GG-AGGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCG
* ***
21353572 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTACATGCCAATG
255 CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
* *
21353637 ACATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
320 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
** *
21353702 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTCAAAATTT
385 GACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * * *
21353767 TTTCGGAAGGAGTTTTGACTCCAAACTTGGTAGCCATGATCCTTCTATTTTTTGTTGGCATGCAC
450 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCAC
* ** *
21353832 AGAAAAATTCAAATAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
21353897 TTTTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
579 TTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * * * *
21353962 TGAGTTCTTGACGTTTGATGTGGGATATGGGGTCAATATCAGGGCCAAGTACCAGCACCCATCGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * **
21354027 ACATCATGTGCG-CA-CACCCC-AT---C-G-ACCCC----CC-C-GATCA---TCGACCAG-G-
709 ACATCATGTGCGCCACCCCCCCGATCGCCGGAACCCCAATGCCGCTGATCAGGTTC-TCTGGCGA
* * ** * * *
21354073 TTCTCCGACGATGGTGCCCTGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGT
773 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
21354138 GCTGCCACAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCATATG
838 GCTGCCGCAACCCTCGGT-CTGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * * * *
21354192 CTTAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCAACAAAATGAGTGTACGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * * * * * * *
21354257 CGACCAGAAGGGCGGGATGCGCAAACCGGGGCTC-AGCCAGTTCCCCCGCTACGTGCTGCCGATC
66 CGGCCAG-AGGGGGGGATGCGCAAGTCAGGGATCGA-CCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * *
21354321 CTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTACGCCTAAGCCG
129 CTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
21354386 ACTGACGAAACAAGCGGACGGGCGGGCGAGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCA
194 ACCGACGAAACGAGCAG-C-GGAGGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
21354451 AGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCATATTTCTGTGTGCCAACGCC
257 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
* *
21354516 ATTTTTATGGCTTGTAAATTCAAACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
21354581 CGACTCGTTTTCTATTATTCATGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTA
387 CGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT-
* * * *
21354646 TT-GGAAGGAGTTTTGGCTCCAAACTTGATTGACGCGATCCTTGTATTTTTGTTGGCATGCACAA
451 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
21354710 AAAAATTCAGCTAAAAACTCAAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
516 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
21354775 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCGCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
21354840 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
21354905 ATCATGTGCG-CA-CCCCCCGATCGCCGGAACCCCAAAGCCGCTGATCAGGTTCTCTGGCGATGC
711 ATCATGTGCGCCACCCCCCCGATCGCCGGAACCCCAATGCCGCTGATCAGGTTCTCTGGCGATGC
* * * *
21354968 TCCGACGATGGTGGCCTGACAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCT
776 TCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* ** **
21355033 GTCGTGACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATG
841 GCCGCAACCCTCGGTCT-GTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * * *
21355084 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTTAACCCACAAAATGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
21355149 CGGCCAGAGGGGGAGGATGCGCAAGTCAGGGATTGACCGGGTCCCCCTCTACGTGCTGTCGATCT
66 CGGCCAGAGGGGG-GGATGCGCAAGTCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
21355214 TGCTGTCGCAACCCTCAGTTTGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAG
130 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
21355279 CCGACGAAACGAGCAAGCGGACGGGCGAGCGGGCACTACGCCGGCCAGAGAGATGGGATGCGCAA
195 CCGACGAAACGAGC-AGCGGA-GGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
21355344 GCCATTGATCGATAGGGTGGTTGGTGGATTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCG
258 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
*
21355409 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGAAAGAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** ** * *
21355474 GACTCGTTTTATATTTTTCACAATTTTTGAAACTTTTTACGTTTCGAGATTTTTTAAAATTTTTT
388 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
21355539 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTTGGCATGCACAAA
453 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAA
**
21355604 AAAATTCATTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
21355657 ATGCTGCAGC
Statistics
Matches: 2781, Mismatches: 345, Indels: 180
0.84 0.10 0.05
Matches are distributed among these distances:
851 67 0.02
852 4 0.00
853 2 0.00
854 4 0.00
855 2 0.00
856 3 0.00
857 1 0.00
860 6 0.00
861 1 0.00
862 1 0.00
864 1 0.00
865 2 0.00
866 5 0.00
867 3 0.00
868 1 0.00
869 1 0.00
871 5 0.00
872 174 0.06
873 7 0.00
874 6 0.00
875 4 0.00
876 464 0.17
877 635 0.23
878 8 0.00
880 2 0.00
881 1 0.00
882 7 0.00
885 1 0.00
886 2 0.00
887 1 0.00
888 5 0.00
889 1 0.00
890 2 0.00
891 13 0.00
892 522 0.19
893 71 0.03
894 1 0.00
896 2 0.00
897 181 0.07
898 70 0.03
899 40 0.01
900 5 0.00
901 444 0.16
908 1 0.00
909 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGGGGATGCGCAAGTCAGGGATCGACCGGGTCCCCCTCTGCGTGCTGTCGATCCT
GCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCAGCGGAGGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
ATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCCACCCCCCCGATCGCCGGAACCCCAATGCCGCTGATCAGGTTCTCTGGCGATGCTCCGA
CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
AACCCTCGGTCTGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:21356204 original size:26 final size:28
Alignment explanation
Indices: 21356148--21356207 Score: 70
Period size: 26 Copynumber: 2.2 Consensus size: 28
21356138 ATTTTTCAAC
* ***
21356148 AGATTTTTGCAAACTTTTTTACGGTTCG
1 AGATTTTTGCAAAATTTTTTACGGAAAG
21356176 AGATTTTT-CAAAATTTTTT-CGGAAAG
1 AGATTTTTGCAAAATTTTTTACGGAAAG
21356202 AGATTT
1 AGATTT
21356208 GGCCCAAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
26 10 0.36
27 10 0.36
28 8 0.29
ACGTcount: A:0.28, C:0.10, G:0.17, T:0.45
Consensus pattern (28 bp):
AGATTTTTGCAAAATTTTTTACGGAAAG
Found at i:21357672 original size:26 final size:26
Alignment explanation
Indices: 21357636--21357688 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21357626 CTGGTCGGAT
21357636 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21357662 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21357688 C
1 C
21357689 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21359398 original size:713 final size:711
Alignment explanation
Indices: 21357797--21359989 Score: 3225
Period size: 713 Copynumber: 3.1 Consensus size: 711
21357787 GATCCTACTA
* * * * * *
21357797 CCGCAACCCTCGATCCGGTCTGCTCTTTGACTAGGAATGAACTCCATTTGCCTAAGCCAACCGAC
1 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * *
21357862 GAAATGAGCGGGCGGGCGGGCGGGAGGGCACTATGCGGGCCAGAGAGACGGGATGCGTAAGTCGT
66 GAAATGAGCGGACGGGCGGGC----GGGCACTACGC-GGCCAGAGAGACGGGATGCGCAAGCCGT
** * *
21357927 GGATCGATAGGGTGGTAGGTGGGTTTAGGT-ACATCTTCATATTTCTATGTACCAATGCAATTTT
126 GGATCGATAGGGTGGTAGGTGGGTTTA-GTCACATCTTCATATTTCTACATGCCAATGCCATTTT
* **
21357991 GATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
190 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACT
* * *
21358056 CGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGCAGTTTCAGATTTTTTAAAATTTTTTGGGA
255 CGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGC-GGTTCAGATTTTTTAAAATTTTTTCGAA
* * * * *
21358121 AGGAGTTTTGGCACCAAACGTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCAAAAAAAAAT
319 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAAT
* * *
21358186 TC-GCTAAGACCTCGAAGTGTACAAGATTTTGTGACCATTTGTAAAAAATATCCCCATTTCAGAC
384 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATATCCCCATTTCAGAC
*
21358250 ACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCT
449 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCT
*
21358315 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
513 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * ** *
21358380 TGCGCACACCCCCCTGGCCCCCCCAATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCCGACG
578 TGCGCACACCCCCC-GGGCCCCCCGATCGCGAGAACCCCAATGCTGCCTGTCAGGTTCTCCGACG
* * * * * *
21358445 ATGCTCCGACGATGGTGCCTCGGTGAAGAAAAATGTGGCCCCAGCACATGCCCGAGACCAGCATG
642 ATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATG
21358510 TGCTG
707 TGCTG
* ** * *
21358515 CCGTAACCCTCTTTCCGGTCCGATCTTAGAGTGGGAATGAACTCCGTATGCCTAATG-CAACCGA
1 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA-GCCAACCGA
* *
21358579 CGAAATGAGCGGACGGGCGGGTGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGA
65 CGAAATGAGCGGACGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
21358644 TCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTACATGCTAATGCCATTTTTATG
129 TCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
21358709 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
194 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTT
* * *
21358774 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAAGA
259 TTTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCA-GATTTTTTAAAATTTTTTCGAAAGGA
* * * *
21358839 GTTTTGGCCCCAAACTTGATAGACGTGATCCCTATATTTTTTTTGGCTTGCACAAAAAAATTCAG
323 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
21358904 CTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTT
388 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATATCCCCATTTCAGACACTT
* * *
21358969 TAATGGCTACTGGCAGCAAACCTGTAAAATCCCAAAGGCTCTTTAAGCGGGTGTGAGTTCTTGAG
453 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGAG
* *
21359034 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCTTGTGCG
517 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* *
21359099 CACACCCCCC-GGCCCCCCGATCGCGAGAACCCCAATGCTGCCTGTTAGGCTCTCCGACGATGCT
582 CACACCCCCCGGGCCCCCCGATCGCGAGAACCCCAATGCTGCCTGTCAGGTTCTCCGACGATGCT
*
21359163 CCGGCGATGGTGCCCCGATGAAGGAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG
647 CCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG
* * *
21359228 CCGCAACCCTCGGTCTGATCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* *
21359293 GAAACGAGCGGACGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
66 GAAATGAGCGGACGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
21359358 CGATAGGGTGGTAGGTTGGTTTAGTCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* *
21359423 CTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACAACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTT
** *
21359488 TTTATTTTTCACGATTTTCAAAACTCTTTGCGGTTCATGATTTTTTAAAATTTTTTCGAAAGGAG
260 TTTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCA-GATTTTTTAAAATTTTTTCGAAAGGAG
* * * *
21359553 TGTTGGACCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAAAA-TAAGC
324 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGC
* **
21359617 TAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCATCCCCATTTCAGACACTTT
389 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATATCCCCATTTCAGACACTTT
* *
21359682 AAGGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGG
*
21359747 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCAC
518 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
21359812 ACACCCCCCGGGCCCCCCGATCATCGA-AATCCCAATACTG-CTGTCAGGTTCTCCGACGAAGCT
583 ACACCCCCCGGGCCCCCCGATC-GCGAGAACCCCAATGCTGCCTGTCAGGTTCTCCGACGATGCT
* * * * *
21359875 CTGGCGATGGTGCCCCGA-CAAGAAAAATGCGACACTAGCACATG-CTCGAGCCCAGCATGTGCT
647 CCGGCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCT-GAGCCCAGCATGTGCT
21359938 G
711 G
* * *
21359939 TCACAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
21359990 TTAGACTGGG
Statistics
Matches: 1331, Mismatches: 133, Indels: 29
0.89 0.09 0.02
Matches are distributed among these distances:
710 2 0.00
711 83 0.06
712 231 0.17
713 482 0.36
714 269 0.20
715 191 0.14
718 72 0.05
719 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (711 bp):
CCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAATGAGCGGACGGGCGGGCGGGCACTACGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTT
TTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGATTTTTTAAAATTTTTTCGAAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATATCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCGGGCCCCCCGATCGCGAGAACCCCAATGCTGCCTGTCAGGTTCTCCGACGATGCTCCGG
CGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG
Found at i:21359992 original size:26 final size:26
Alignment explanation
Indices: 21359963--21360015 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21359953 CCGGTCTGAT
21359963 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21359989 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21360015 C
1 C
21360016 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21360871 original size:26 final size:26
Alignment explanation
Indices: 21360842--21360894 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21360832 CCAGTCCGAT
21360842 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * * *
21360868 CTTAGATTGGGAATGAATTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21360894 C
1 C
21360895 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21363278 original size:26 final size:26
Alignment explanation
Indices: 21363249--21363300 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
21363239 CGGTCTGATA
21363249 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
*
21363275 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
21363301 CTAACTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:21364181 original size:26 final size:26
Alignment explanation
Indices: 21364152--21364204 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21364142 CCGGTTCGAT
21364152 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21364178 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21364204 C
1 C
21364205 CTAGGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21366407 original size:889 final size:885
Alignment explanation
Indices: 21362378--21366518 Score: 5583
Period size: 900 Copynumber: 4.6 Consensus size: 885
21362368 CCGATCTGAT
* * * *
21362378 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** *
21362443 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTATGTGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCT
* ** *
21362508 TGCTGCTACAACCCTCAGTCAG-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTACCGCAACCCTCAGTCAGATTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
21362572 ACCGACGAAATGA----GTGGGCAGGCGGGCACTACGCTGGACAGAGAGACAGGATGCGTAAGCG
195 ACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC-GGATGCGCAAGCC
* *
21362633 GTGGATTGATGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* *
21362698 TTAAGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
21362763 TCGTTTTCTATTTTTGACAATTTTCGAAACTTTTTGCGGTTCGAGATTTTTAAAAAATTTTTCGG
389 TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT-CGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * *
21362828 AAGGAGTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTTAGCATGCACAAAAAT
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAA-
* *
21362893 ATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
516 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
21362958 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTT
581 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * *
21363023 CTCGAGGTGTAATGAGGGATAGGGGACCAATGTAAGGGCCAAGTACCAGCACCCATCGAACATCA
646 CTCGAGGTTTGATGAGGGATAGGGGACCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
21363088 TGTGTGTACACCCCCCC-GACCCCCCGATCGTCGGAACTCTAATGCCGCCGATCAGGTTCACTGG
711 TGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAAT---GCC-A-CCGG-TCA--GG
* * * * **
21363152 CAATGCTCCGGCAATGATGCC-CTGGCGAAGAAAAATGCGGCACCAGCACATGGTCAAGCCCAGC
768 ---TTCTCCGGCGATGGTGCCTC-GACGAAGAAAAATGC-GCACCAGCACATGCCCAAGCCCAGC
* *
21363216 ATGTGCTGCCGCAACCCTCGGTCCGGTCTGATATTAGACTGGGAATGAACTCCGTATG
828 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
21363274 CTTAGATTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGTGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * * *
21363339 CGGCCAGAGGGGCGGGATGCACAAGCTAGGGATCGG-CTGGTCCCCCTCTTCGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCT
* * *
21363403 TGCTACCGTAACCCTCAGTTCAG-TTCGATCTTGGACTGGGAATGAACTCTCATATGCCTAAGCC
131 TGCTACCGCAACCCTCAG-TCAGATTCGATCTTAGACTGGGAATGAACTC-CGTATGCCTAAGCC
* * *
21363467 AACCGATGAAATGAGCGGGCGGGTGGGCGGGCGGGCACTACACCGGCCAGGGAGACGAGATGCGC
194 AACCGACGAAATGAGCGGGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACG-GATGCGC
** * *
21363532 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAAGTTCATATTTGTGCGTGCCAATGC
254 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
21363597 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
319 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * *
21363662 ACGACTCGTTTTCTTTTTTTCACGATTTTTGAAACTTTTTGTGGTTC-ATGATTTTTTAAAATTC
384 ACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT-CGGTTCGA-GATTTTTTAAAATTT
* * *
21363726 TTTCGGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCACA
447 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-
21363791 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
511 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
21363856 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGT
576 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
21363921 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCA
641 GAGTTCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAAGGCCAAGTACCAGCACCCATCGCA
**
21363986 CATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTT
706 CATCATGTGCGCACACCCCCC-CGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGG-T
*
21364051 CTCCGGCGACGCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGCACCAGCACATGCCCGAGCC
769 -T---------CTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGCACCAGCACATGCCCAAGCC
* * ** *
21364116 TAGCATGTACTGCCATAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
824 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
21364178 CTTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACCCATGAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* ** * **
21364243 CGGCCAGAGGGGCGGGATGCGCATGCCGGGGATCGGCCGGGTAACCCTCTGCGTGCTGCTTATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCT
* * * * * * * *
21364308 TACTGCCGTAACCCTCGGTCTGGTTCGATCTTATACTGGGAATGATCTCCGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCAGTCAGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
21364373 CCGACGAAATGTGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCG
196 CCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG-GATGCGCAAGCCG
* * *
21364438 TGGATCGATAGGGTGGTAGGTGGGTATAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTC
260 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
21364503 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
325 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * *
21364568 CGTTTTCTATTCTTCACGATTTTTGAAACTATTTACAGTTCGAGATTTTTTAAAATTTTTTTGAA
390 CGTTTTCTATTTTTCACGATTTTCGAAACT-TTTTCGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * * *
21364633 AGGATTTTTGGCCCCAAACTTGGTGGACGTGATCCTTGCATTTTTGTTGGCATGCATAAAAAAAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAT
* * * *
21364698 CCAGCTAAAAACTCAAAGTGTACAAAATTTTGTGAACATTTGAAAATAGTGTCCCCATTTCAGAC
518 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
21364763 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
21364828 CGAGGTTTGATGAGGGATAGGGGGCCAATAT-AAGAACCAAGTACCAGCACCCATCGCACATCAT
648 CGAGGTTTGATGAGGGATAGGGGACCAATATAAAG-GCCAAGTACCAGCACCCATCGCACATCAT
* * ** * * *
21364892 ATGCGCACACCACCCCGGCCCCCCCGATCACCGGAACCCAAATGTCACCGGTCAGGTTCTCCGGC
712 GTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGC
*
21364957 GATGGTGCCTCGACGAAGAAAAATGCGCACCAGCACATGCCTAAGCCCAGCATGTGCTGCCGCAA
777 GATGGTGCCTCGACGAAGAAAAATGCGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAA
* * * *
21365022 CCCTCAGTCCGGTCTGATCTTAGAAT-GGAATGAACTCCTTATG
842 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
21365065 CTTACACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
21365130 CGGCCCGAGGGGCGGGATGCGCAAGCCGGCGATCGGCCGGGTCCCCCTCTGCGTGTTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCT
* * * * * * *
21365195 AGTTTCCACAACCC-CCGATCAGATTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCC
131 TGCTACCGCAACCCTCAG-TCAGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
21365259 ACCGACGAAACGAGCGGGTGGGTGAGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGC
195 ACCGACGAAATGAGCGGGCGGGCG-GGCGGGCACTACGCCGGCCAGAGAGAC-GGATGCGCAAGC
* * *
21365324 CGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
21365389 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAA
323 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * *
21365454 ATCGTTTTCTATTTTTCACAATTTTCAAAAATATTTACGGTTCGGGATTTTTTAAAATTTTTTTC
388 CTCGTTTTCTATTTTTCACGATTTTCGAAACT-TTTTCGGTTCGAGATTTTTTAAAA-TTTTTTC
* *
21365519 GGAAGGAGTTTTGGCCCCAAACTTCGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAACAA
451 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA-AA
* * *
21365584 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACAATTTGAAAAAGGTGTCCCCATTTTA
515 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * ** *
21365649 GTCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAAAGGCTGTGAGT
580 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
21365714 TCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAAGGCAAAGTACCTGCACCCATTGCACATC
645 TCTCGAGGTTTGATGAGGGATAGGGGACCAATATAAAGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
21365779 ATGTGCGCACATCCCCCCGGCCCCTCCGTTGGTCGAAACCCCAATGCCACCGGTTAGGTTCTCCG
710 ATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCG
* * * * * *
21365844 GTGATGGTGCCTGGACAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTG
775 GCGATGGTGCCTCGACGAAGAAAAATGC-GCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCG
* *
21365909 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGCATG
839 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
21365956 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACAAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * ** *
21366021 CGGCCAGAGGGGCGGGATGCGTAAGTCGGGGATTGGTTGAGTCCCCCTCTACGCACTACCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCT
* * * * * *
21366086 TGCTATCGCAATCCTCAGTCCGATAT-GACCTTAGACTGGTAATGAACTCCATATGCCTAAGCCA
131 TGCTACCGCAACCCTCAGTCAGAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
21366150 ACCGATGAAACGAGCGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACAGGATGCGCAAGCC
195 ACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC-GGATGCGCAAGCC
*
21366215 GTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
* * * *
21366280 TTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACCTGATGTTTAATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
21366345 TCGTTTTCTATTTTTTACGATTTTCAAAACATTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGA
389 TCGTTTTCTATTTTTCACGATTTTCGAAAC-TTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGG
**
21366410 AAGGAGTTTTGGATCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAA
453 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AA
*
21366475 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGA
517 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
21366519 TCCAAGTACC
Statistics
Matches: 2874, Mismatches: 327, Indels: 95
0.87 0.10 0.03
Matches are distributed among these distances:
886 2 0.00
887 200 0.07
888 301 0.10
889 421 0.15
890 269 0.09
891 192 0.07
892 3 0.00
895 61 0.02
896 123 0.04
897 3 0.00
898 1 0.00
899 39 0.01
900 474 0.16
901 4 0.00
902 3 0.00
903 215 0.07
904 453 0.16
905 109 0.04
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCT
TGCTACCGCAACCCTCAGTCAGATTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTCGAAACTTTTTCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCA
GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGACCAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATG
GTGCCTCGACGAAGAAAAATGCGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCT
CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:21368883 original size:26 final size:26
Alignment explanation
Indices: 21368845--21368896 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21368835 CTGATCTGAT
*
21368845 CTTAGACTAGGAATGAATTCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
*
21368871 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
21368897 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:21369783 original size:26 final size:26
Alignment explanation
Indices: 21369747--21369814 Score: 127
Period size: 26 Copynumber: 2.6 Consensus size: 26
21369737 GGTCCGATCC
21369747 AATGAACTCTGTATGCTTAGACTGGG
1 AATGAACTCTGTATGCTTAGACTGGG
21369773 AATGAACTCTGTATGCTTAGACTGGG
1 AATGAACTCTGTATGCTTAGACTGGG
*
21369799 AATGAACTCTGCATGC
1 AATGAACTCTGTATGC
21369815 CTAAGTCAAC
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (26 bp):
AATGAACTCTGTATGCTTAGACTGGG
Found at i:21370617 original size:26 final size:26
Alignment explanation
Indices: 21370581--21370633 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21370571 CCATTCCGAT
*
21370581 CTTAGACTGGGAAAT-AACTCTGTATG
1 CTTAGACTGGG-AATGAACTCCGTATG
21370607 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21370633 C
1 C
21370634 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21371500 original size:26 final size:26
Alignment explanation
Indices: 21371462--21371514 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21371452 CCAGTTTGAT
* *
21371462 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGAGGAATAAACTCCGTATG
*
21371488 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACGAGGAATAAACTCCGTATG
21371514 C
1 C
21371515 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACGAGGAATAAACTCCGTATG
Found at i:21373281 original size:25 final size:26
Alignment explanation
Indices: 21373233--21373282 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 26
21373223 CTGATACAAT
* *
21373233 CTTAGACTAGGAATGAGCTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
21373259 CTTAGACT-GGGATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
21373283 ACCTAGGTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21373627 original size:889 final size:884
Alignment explanation
Indices: 21370577--21377166 Score: 7413
Period size: 888 Copynumber: 7.4 Consensus size: 884
21370567 CAGTCCATTC
21370577 CGATCTTAGACTGGGAAAT-AAC-TCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 CGATCTTAGACTGGG-AATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
** * ** * *
21370640 CAACCCATTAAAAGAGCGTACA-GGCGCTCAGTTGACCAGAGGGGCGGGATGCACAAGCCAGGGA
64 CAACCCACGAAATGAGCGTACAGGGCGCTCAGCCGGCCAGAGGGGC-GGATGCGCAAGCC-GGGA
* * *
21370704 TCAGTCGGGTCCCCCTCTGCGTGCT---G-------T--CGCAACCCTTGGTCTGATCCGATCTT
127 TCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTTCTGCCGCAACCCTTAGTCTGATCTGATCTT
* * * * *
21370757 AGACTGGGAATGAACTCTGAATGCCTAAGCCAACCGATGAAACGAGA-GGGCGAGCGGGCTGGCG
192 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AGACGGGCG-GGGGGCGGGCG
* * *
21370821 GGCACTACGCTGGCCTGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
255 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * ** * *
21370886 ACGCACATCTTCATATTTCTACGTGCCAATAACATTTTTATTGCTTGTAAATTCATACATTGGTC
320 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
21370951 CCTTAAGCCTTCACGTGAAGTTTCATGTCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAA
385 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
** * **
21371016 ACTTTTTACGGTTCACGATTTTTTAAAATTTTTTTGGAAAGAGTTTTT-GCCCTGAACTTGGTAG
450 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGA-TTTTTGGCCCCAAACTTGGTAG
* * * *
21371080 ACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAACTCGAAGTGTATAAG
514 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
21371145 ATTTTGTGA-CATTTTGAAAAAAATGTCCCCATTTCAGACACATTAATGGCTACTGGTAGCAAAC
579 ATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
21371209 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAATTCTCGAGGTTTGATGAGGGATAGGGGTC
643 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
21371274 CAATATAAGGGCCTAGTACCCGCACCCATTGCACATCATGTGCGCACTCCCCCCCGGCCCCTCCG
708 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA--------C-ACCCC-CCG
* *
21371339 ATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCT-C-CGA---CGATGGTGCCCCGATGAAGAAA
763 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGAGCTCGATGGTGCCCCGACGAAGAAA
* * * * *
21371399 ACTGTGGCACCAGCAAATGCCCGAGCCCAGCATGTGCTGCCAG-AAGCCTCGGTCCAGTT
828 AATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-GCAACCCTCGGT-C-GAT
* * * * *
21371458 TGATCTTAGACGGGGAATGAACTCCGTATGCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** * *
21371523 ACCCACGAAAAGAGCGTACA-GGCGCTCAGCCATCCAGAGGGACGGGATGCGTAAGCCGAGGATC
66 ACCCACGAAATGAGCGTACAGGGCGCTCAGCCGGCCAGAGGGGC-GGATGCGCAAGCCG-GGATC
* **
21371587 GGTCGGGTCCCCCTCTGCGTGCTGCCGAT-CTTGCTGCCTCAACCCTCGGTCT-AGTCTGATCTT
129 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTT-CTGCCGCAACCCTTAGTCTGA-TCTGATCTT
* *
21371650 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-GAACGGGCGGGCAGGCGGGCA
192 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAG-ACGGGCGGG-GGGCGGGCG
* * * *
21371714 GGCACTATGCCGCCCAGAGAGACGGGATGCGAAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTT
255 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
**
21371779 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTCATAAATTCATACAATGGTC
320 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
21371844 CCTTAAGCCTTCACGTGAAGTTTCATGGC-AGTACGACTCGTTTTCTATTTTTCACGATTTTTGA
385 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-ACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * *
21371908 AACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGTCCCTAAACTTGGTAG
449 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAG
* * * *
21371973 ACATGATCCTTGTATTTTTTTTGGCATACTA-AAAAAAAATCAGCTAAAAACTCGAAGTGTAGAA
514 ACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
21372037 GATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAACAAAC
578 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
21372101 CTGTAAAATTTCAAATGCTCTTAAAAGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGC
643 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
21372166 TAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACAACCCCCTCCAGCCCCCC
708 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA--TGTGCGC-A-------CA--CCCCC
*
21372231 CGATCGTCGGAACCCCAGTGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGA
761 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGA-GC-T---CGATGGTGCCCCGA
*
21372296 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA--C-C---C--T
820 CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGAT
**
21372353 CGATC-----C---G---G---TTCG-AT-CTTAGACTGGGAATGAACTATGTATGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *** * *
21372402 ACCCACGAAACGAGCGT-CAGGGCGCTCAGTCGGCCAGAGGGTTAAGATACACAAGCCGAGGATC
66 ACCCACGAAATGAGCGTACAGGGCGCTCAGCCGGCCAGAGGG-GCGGATGCGCAAGCCG-GGATC
* * * * * ** * *
21372466 GATCGGGTCCCCCTCTACATGCTGCTGATCCTGCT-ATGACAACCCTCCA-TC-CAGTCTGATCT
129 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTTCTGCCG-CAACCCT-TAGTCTGA-TCTGATCT
* * *
21372528 TAGACTAGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGACGGGCG
191 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A---GAC-GG--G-CGGG-G
* *
21372593 GGCGGGCGGGCATTACTCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
247 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
21372658 GTGGGTTTAGGAACATCTTCATATTTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATGCAT
312 GTGGGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
**
21372723 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATAACTCGTTTTCTATTTTTCACG
376 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * * * * *
21372788 ATTTTCAAAACCTTTTATGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGATTTTTAGCCCGAAA
441 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAA
* * *
21372853 CTTGGTAGACGTGATCCCTGTATTTTTGTTGGCATGCA-AAAAAATATTAAGCTAAAAACTCGAA
506 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAA
*
21372917 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGCTACTGG
570 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
21372982 CAACAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
635 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * *
21373047 TAGGGGGCAAATATAAGGGCCAAGTACCAGTACCAATCGCACATCATGTGCGTACACCCCCCGAT
700 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAT
*
21373112 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-C-CG-G-T-GATGGTGCCCCGACGAAGAAAAA
765 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGAGCTCGATGGTGCCCCGACGAAGAAAAA
* * *
21373172 TAAGGCACCAGCACATGCCTGAGCGCAGCATGTGCTGCCGCAACCCTCGGTCTGAT
830 TATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-GAT
* * * * *
21373228 ACAATCTTAGACTAGGAATGAGCTTCGTATGCTTAGACTGGG-ATGAACTCCGTATACCTAGGTC
1 -CGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* *
21373292 AA-CCACGAAATGAGCG-ACAGGCCGCTCAGTCGGCCAGAGGGGCGGATGCGCAAGCCAGGGATC
65 AACCCACGAAATGAGCGTACAGGGCGCTCAGCCGGCCAGAGGGGCGGATGCGCAAGCC-GGGATC
* ** * *
21373355 GGTCGGGTCCCCCTCTGCATGCTATCGATCCTTTTGCCGCACAGCCTTAGTCTGATCTGATCTTA
129 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTTCTGCCGCA-ACCCTTAGTCTGATCTGATCTTA
*
21373420 GACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGTGGGCGGGTGGG
193 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AG-A--C----GGGCGGG-GGG
* *
21373485 CGGGCGGGCACTACGCCGGCCAGAGAGATGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
249 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
21373550 GGGTTTAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCCTGTAAATTCATATA
314 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
21373615 ATGGTCCCTTAAGCCTTCACATGAAGTTTCAGGGCAAGACGACTCATTTTCTATTTTTCACGATT
379 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* ** *
21373680 TTAGAAACTTTTCT-CGGTTCGGGATTTTTTAAAAAATTTTTGGAAGGAGTTTTGGCCCCAAACT
444 TTTGAAACTTTT-TACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACT
* *
21373744 TCGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTG
508 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
** *
21373809 TACGTGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTGT-AGACACTTTAATGGCTACTGGAA
573 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TCAGACACTTTAATGGCTACTGGCA
*
21373873 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
637 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
21373938 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCGCACCCCCTGGCCC
702 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCGCA--CAC---CCC
* * *
21374003 CCTTGATCGTCGGAACCCTAATACCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
760 CC--GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGA-GCT----CGATGGTGCCC
* ** * *
21374068 CGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTC
817 CGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*
21374133 TAGT
882 GA-T
* * * *
21374137 CCGATCTTAGACTAGGAATGAACTCCCTATGCTTAGACT-GGAATGAACTCCGTATGGCTAAGTC
1 -CGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
21374201 AACCCACGAAATGAGCGTGC-GGGCGTTCAGCCAGCCAGAGGGGAGGGATGCGCAAGCCAGGGAT
65 AACCCACGAAATGAGCGTACAGGGCGCTCAGCCGGCCAGAGGGG-CGGATGCGCAAGCC-GGGAT
* * * * *
21374265 CGGCCGGGTCCCCCTCTACGTGCTGCCAAT-C--CTGCTGC--CCCTTGGTCTGATCTGATCTTA
128 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTTCTGCCGCAACCCTTAGTCTGATCTGATCTTA
* * * * *
21374325 GACTGGGAATGTACTCCGTATGCCTAAACCAACCGACGAAA-TGA---GC---GGGCAGGCGAGC
193 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGACGGGCGGGGGGCGGGCGGGC
** * *
21374383 ACTACGTTGG-TAGGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAG
258 ACTACGCCGGCCA-GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
21374447 GCACATCTTCATATTTTTGCATGCCAATCCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCC
322 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
21374512 TTAAGCCTTCACGTGAAGTTTCACGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAAC
387 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * ***
21374577 TTTTTGCGGTTCGAGATTTTTTAAAA-TTTTTCAAAAGGATTTTTGGCCCCAAACTTGGTAGACG
452 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACG
* *
21374641 TGATCCTTGTATTTTTTTTAGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATT
517 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * * *
21374706 TTGTGACCATTTGAAAAATGTGTCTCCATTTCAAACACTTTAATGGCTACTAGCAGCAAACTTGT
582 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
21374771 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAAT
647 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
21374836 ATAAGGGCCAAGTATCAGCCCCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATTGC
712 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-G----ATCG--T--
* * *
21374901 CGAAACCCCAATGCCGCCGGTCATGTTCTCCGACGATGCTCCGGCGATGGTGCCCCAACGAAGAA
768 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGA-GCT----CGATGGTGCCCCGACGAAGAA
* * * *
21374966 AAATATGGCACCAGCACATGCCCGAGCCCAACTTGTGCTGTCGCAACCCTCGGTCCAGT
827 AAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGA-T
* * * * *
21375025 CTGATCTTAGACTGGGAATGAACTCCGTATCCTTAGACTCGGAATGAACTCTGTATGCCTAAGTT
1 C-GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
21375090 AACCCAAGAAATGAGCGTGC-GGGCACTCAGCCGGCCAGAGGGACGAGATGCGCAAGTCGGGGAT
65 AACCCACGAAATGAGCGTACAGGGCGCTCAGCCGGCCAGAGGGGCG-GATGCGCAAG-CCGGGAT
** * * * * * **
21375154 CGACCGGGTTCGCCTCTGCGTGCTGCCAAT-CTTGCTGCCACAACCC-TCGCTCTGGCCTGATCT
128 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTT-CTGCCGCAACCCTTAG-TCTGATCTGATCT
* ** * *
21375217 TATACTATGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA-TGAGCGGGCGGGCGGGCGGGC
191 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGA-CGGGCGGG-GGGCGGGC
* * *
21375281 GGGCATTACGCCGGCCAGAGAGACGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
254 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
21375346 TAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATGA-AATGG
319 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT-ACAATGG
* *
21375410 TCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTG
383 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** * *
21375475 AAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCAGAAGGATTTTT-GTCCCAAATTTGGTA
448 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTA
* * *
21375539 GACATGATCCTTGTATTTTTTTGGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAA
513 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * ** * *
21375604 GATTTTGTGACCATTTGAAAGAAGTGTCCTCATTTTGGACACTTTAATAGCTACTGACAGCAAAC
578 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
21375669 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
643 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
21375734 AAATATAAGGGCCAAGTACCAGCACCAATCACACATCATGTGCGCACACCCCCCGATCGTCGGAA
708 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGATCGTCGGAA
* * * **
21375799 CCCTATTGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAG-AAAATA
773 CCCCAATGCCGCCGGTCAGGTTCTCCG-CGA-GCT----CGATGGTGCCCCGACGAAGAAAAATA
* * * * *
21375863 CGACACCAAGCAGCACCAACACTTGCCCGAGCCCAGCATTTGCTGCCGCAACCCTTGGTCCAAT
832 TGGCA-C---CAG---C-ACA--TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT-CGAT
* *
21375927 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCC-AA-TC
1 C-GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * * *
21375990 AACACACGAAACGAGCGTGCA-GGCCCTCAGCCGACCAGAGGGGTGGGATGGCGCATGCCGTGGA
65 AACCCACGAAATGAGCGTACAGGGCGCTCAGCCGGCCAGAGGGG-CGGAT-GCGCAAGCCG-GGA
* * * * * * * *
21376054 TCGGTC-GGT-CCTCT-TGCATGCAGCCGAT-CTTGCTACTCGTAACCCTCAGTCCGGTCTGATC
127 TCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTT-CTGC-CGCAACCCTTAGTCTGATCTGATC
*
21376115 TTAGACTGGGAATTAACTCCGTATGCCTAAGCCAACCGACGAAAC-GA----------GCGGGCG
190 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGACGGGCGGGGGGCGGGCG
* * *
21376169 AGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTT
255 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * ***
21376234 AGGCACATCTTCATGTTTTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
320 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
21376299 CCTTAAGCCTTCACATGATGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
385 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
21376364 ACTTTTTACGG-TCTGAGATTTTTTAAAATTTTTTCGAAAGG-TGTTTTGGCCCCAAACTTGGTA
450 ACTTTTTACGGTTC-GGGATTTTTTAAAATTTTTTTGGAAGGAT-TTTTGGCCCCAAACTTGGTA
*
21376427 GACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
513 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
21376492 GATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATAGCTACTGACAGCAAAC
578 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
21376557 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
643 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
21376622 CAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGCACACCCCCCCCCGGCCCCCT
708 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--------C--CCCCC-
* * * ** *
21376687 GATCGCCAGAACCCTAAAACCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC-AG
762 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGA-GCT----CGATGGTGCCCCGA-
* * *
21376751 CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCTAGCATGTGCAGCCGTAA-CC-C--TCG--
820 CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGAT
21376810 -G-TC-----C---G-AT---C-T-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
1 CGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* ** * * * *
21376857 TCCCACGAAATGAGCGCGC-GTGCGCTCAGCAGGCCAGAGGGGCGGGATACGCAAGCTGAGGATC
66 ACCCACGAAATGAGCGTACAGGGCGCTCAGCCGGCCAGAGGGGC-GGATGCGCAAGCCG-GGATC
* * ** * * *
21376921 GGTCGGGTCCCCATCTGCGTGCTACCGATCCTGT-TATCGTAACCCTCGAG-CTGGTCTGATCTT
129 GGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT-TCTGCCGCAACCCT-TAGTCTGATCTGATCTT
*
21376984 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACA-A---GCAGGCGGGCGGGCGG
192 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGACGGGC-GGGGGGCGGGCGG
* *
21377045 GCACTACGACGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTA
256 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
21377110 GGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
321 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
21377167 GATTTTTGAA
Statistics
Matches: 4967, Mismatches: 531, Indels: 428
0.84 0.09 0.07
Matches are distributed among these distances:
864 27 0.01
865 20 0.00
866 106 0.02
867 67 0.01
868 17 0.00
869 3 0.00
870 2 0.00
871 2 0.00
872 3 0.00
874 2 0.00
875 123 0.02
876 5 0.00
877 39 0.01
878 2 0.00
879 171 0.03
880 12 0.00
881 139 0.03
882 1 0.00
883 1 0.00
884 11 0.00
885 1 0.00
886 13 0.00
887 325 0.07
888 875 0.18
889 859 0.17
890 221 0.04
891 30 0.01
892 163 0.03
893 443 0.09
894 104 0.02
895 12 0.00
896 12 0.00
897 6 0.00
898 57 0.01
899 123 0.02
900 58 0.01
901 19 0.00
902 537 0.11
903 24 0.00
904 2 0.00
905 120 0.02
908 8 0.00
909 124 0.02
910 34 0.01
911 44 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
CGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAATGAGCGTACAGGGCGCTCAGCCGGCCAGAGGGGCGGATGCGCAAGCCGGGATCGG
TCGGGTCCCCCTCTGCGTGCTGCCGATCCTTCTGCCGCAACCCTTAGTCTGATCTGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGACGGGCGGGGGGCGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT
TACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGATCGTCGGAACCCCAATG
CCGCCGGTCAGGTTCTCCGCGAGCTCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCGAT
Found at i:21374183 original size:25 final size:26
Alignment explanation
Indices: 21374142--21374192 Score: 86
Period size: 25 Copynumber: 2.0 Consensus size: 26
21374132 CTAGTCCGAT
21374142 CTTAGACTAGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCCTATG
*
21374168 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCCTATG
21374193 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATG
Found at i:21375068 original size:26 final size:26
Alignment explanation
Indices: 21375030--21375080 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21375020 CCAGTCTGAT
*
21375030 CTTAGACTGGGAATGAACTCCGTATC
1 CTTAGACTCGGAATGAACTCCGTATC
*
21375056 CTTAGACTCGGAATGAACTCTGTAT
1 CTTAGACTCGGAATGAACTCCGTAT
21375081 GCCTAAGTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATC
Found at i:21375539 original size:902 final size:899
Alignment explanation
Indices: 21372367--21377166 Score: 5779
Period size: 889 Copynumber: 5.4 Consensus size: 899
21372357 CCGGTTCGAT
** *
21372367 CTTAGACTGGGAATGAACTATGTATGCCTAAGTCAACCCACGAAACGAGCGT-CAGGGCGCTCAG
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-GGGCGCTCAG
* **** * * * * * *
21372431 TCGGCCAGAGGGTTAAGATACACAAGCCGAGGATCGATCGGGTCCCCCTCTACATGCTGCTGATC
64 CCGGCCAGAGGGACGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* *** * ** * *
21372496 CTGCTATGACAACCCTCCATCCAGTCTGATCTTAGACTAGAAATGAACTCCGTATGCCTAAGCCA
129 TTGCTGCCACAACCCT-CGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
21372561 ACCGACGAAACGAGCGGGCGGGCAGACGGGCGGGCGGGCGGGCATTACTCCGGCCAGAGAGACGG
193 ACCGACGAAACGA----GC-GG--G-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
* * *
21372626 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTTTTGCGT
250 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTGCAT
*
21372691 GCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
314 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
** ** * * *
21372756 ATGGCAAGATAACTCGTTTTCTATTTTTCACGATTTTCAAAACCTTTTATGGTTCAGGATTTTTT
379 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT
* * * * *
21372821 AAAATTTTTTTGGAAGGATTTTTAGCCCGAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGC
444 AAAATTTTTTCGGAAGGATTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGC
*
21372886 ATGCA-AAAAAATATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
508 ATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
21372950 GTCCCCATTTCAGACACTTTAATAGCTACTGGCAACAAACTTGTAAAATCTCAAATGCTCTTTAA
572 GT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
21373015 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGTAC
636 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
21373080 CAATCGCACATCATGTGCGTACA--------CCCCC-CGATCGCCGGAACCCCAATGCCGCCGGT
701 CCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGT
*
21373136 CAGGTTCT-C--CG--G-T-----GATGGTGCCCCGACGAAGAAAAATAAGGCACCAGCACATGC
766 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGC
* * * * * * *
21373190 CTGAGCGCAGCATGTGCTGCCGCAACCCTCGGT-CTGATAC-AATCTTAGACTAGGAATGAGCTT
831 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-T-CTGATCTTAGACTGGGAATGAACTC
21373253 CGTATG
894 CGTATG
* * * * * *
21373259 CTTAGACTGGGATGAACTCCGTATACCTAGGTCAA-CCACGAAATGAGCG-ACAGGCCGCTCAGT
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC-GGGCGCTCAGC
* * **
21373322 CGGCCAGAGGGGC-GGATGCGCAAGCC-AGGGATCGGTCGGGTCCCCCTCTGCATGCTATCGATC
65 CGGCCAGAGGGACGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGAT-
* * * * * *
21373385 CTT-TTGCCGCACAGCCTTAGTCTGATCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGC
128 CTTGCTG-C-CACAACCCTCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* *
21373449 CAACCGACGAAACGAGCAGGCGGGTGGGCGGGTGGGCGGGCGGGCACTACGCCGGCCAGAGAGAT
191 CAACCGACGAAAC--G-A-GC----GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC
* *
21373514 GGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTGCA
248 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
* * *
21373579 TGCCAATGCCATTTTTATGGCCTGTAAATTCATATAATGGTCCCTTAAGCCTTCACATGAAGTTT
313 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
21373644 CAGGGCAAGACGACTCATTTTCTATTTTTCACGATTTTAGAAACTTTTCT-CGGTTCGGGATTTT
378 CATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTT-TACGGTTCGGGATTTT
* * * *
21373708 TTAAAAAATTTTT-GGAAGGAGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTTTT
442 TT-AAAATTTTTTCGGAAGGA-TTTTTGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTT
* **
21373772 GGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTACGTGATTTTGTGACCATTTGAAAAAA
505 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
21373837 GTGTCCCCATTGT-AGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTT
570 GTGT-CCCATT-TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
21373901 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
633 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * * * *
21373966 CACCCATCGTACATCATGTGCGCGCACCCCCTGGCCCCCTTGATCGTCGGAACCCTAATACCGTC
698 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCC
* ** *
21374031 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGACACCAGCACA
763 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACA
* * * *
21374096 TGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTAGTCCGATCTTAGACTAGGAATGAACT
828 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACT
*
21374161 CCCTATG
893 CCGTATG
* *
21374168 CTTAGACTGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAATGAGCGTGCGGGCGTTCAGCC
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * *
21374233 AGCCAGAGGGGA-GGGATGCGCAAGCC-AGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCAATC
66 GGCCAGA-GGGACGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * *
21374296 CTGCTG-C-C--CCTTGGTCTGATCTGATCTTAGACTGGGAATGTACTCCGTATGCCTAAACCAA
129 TTGCTGCCACAACCCTCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
21374357 CCGACGAAATGA--------GCGGGCAGGCGAGCACTACGTTGG-TAGGAGAGACGGGATGCGCA
194 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCA-GAGAGACGGGATGCGCA
* * *
21374413 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATCCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
21374478 ATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * * *
21374543 TGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
** * *
21374607 TCAAAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTAGCATGCACAAA
453 TCGGAAGGATTTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAA
* *
21374672 AAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCTCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC-CCATTT
* * *
21374737 CAAACACTTTAATGGCTACTAGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
581 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
21374802 GTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTATCAGCCCCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
21374867 TCATGTGCGCACACCCCCCGGCCCCCTCGATTGCCGAAACCCCAATGCCGCCGGTCATGTTCTCC
711 TCATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
21374932 GACGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAA
776 GACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAG
* * *
21374997 CTTGTGCTGTCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATC
841 CATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
21375056 CTTAGACTCGGAATGAACTCTGTATGCCTAAGTTAACCCAAGAAATGAGCGTGCGGGCACTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* * * ** * * *
21375121 CGGCCAGAGGGACGAGATGCGCAAGTCGGGGATCGACCGGGTTCGCCTCTGCGTGCTGCCAATCT
65 CGGCCAGAGGGACGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCT
* * **
21375186 TGCTGCCACAACCCTCGCTCTGGCCTGATCTTATACTATGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTGCCACAACCCTCG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
21375251 CTGACGAAATGAGCGGGCGGGCGGGCGGGCGGGCATTACGCCGGCCAGAGAGACGAGATGCGTAA
194 CCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
21375316 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
21375381 TTTTTATGGCTTGTAAATTCATGA-AATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGA
324 TTTTTATGGCTTGTAAATTCAT-ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
21375445 CGACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
21375510 TCAGAAGGATTTTTGTCCCAAATTTGGTAGACATGATCCTTGTATTTTTTTGGGCATGCACAAAA
453 TCGGAAGGATTTTTGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAA
* * *
21375575 CAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCTCATTTT
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC-CATTTC
* * *
21375640 GGACACTTTAATAGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
582 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
21375705 TTCTCAAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCAGCACCAATCACACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
21375770 CATGTGCGCACA--------CCCCC-CGATCGTCGGAACCCTATTGCCGTCGGTCAGGTTCTCCG
712 CATGTGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** * *
21375826 ACGATGCTCCGGCGATGGTGCCCCGGTGAAG-AAAATACGACACCAAGCAGCACCAACACTTGCC
777 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCA-C---CAG---C-ACA--TGCC
* * *
21375890 CGAGCCCAGCATTTGCTGCCGCAACCCTTGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGT
832 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGT
21375955 ATG
897 ATG
* * * * *
21375958 CTTAGACTGGGAATGAACTCTGTATGCC-AA-TCAACACACGAAACGAGCGTGCAGGCCCTCAGC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGC
* ** * * * * *
21376021 CGACCAGAGGGGTGGGATGGCGCATGCCGTGGATCGGTC-GGT-CCTCT-TGCATGCAGCCGATC
65 CGGCCAGAGGGACGGGAT-GCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * *
21376083 TTGCTACTCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCC
129 TTGCTGC-CACAACCCTC-GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
21376148 AACCGACGAAACGA------------GCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGC
192 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * * ***
21376201 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTTTATGTGCCAATGC
257 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
* *
21376266 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGATGTTTCATGGCAAG
322 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
21376331 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGG-TCTGAGATTTTTTAAAATTT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GGGATTTTTTAAAATTT
*
21376395 TTTCGAAAGG-TGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
451 TTTCGGAAGGAT-TTTT-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAC
21376459 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC-CA
* *
21376524 TTTCAGACACTTTAATAGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
578 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
21376589 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGC
643 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * ** *
21376654 ACATCATGTGCGCACACCCCCCCCCGGCCCCCT-GATCGCCAGAACCCTAAAACCGTCGGTCAGG
708 ACATCATGTGCGCACA---CCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
21376718 TTCTCCGACGATGCTCCGACGATGGTGCCCC-AGCGAAGAAAAATATGGCACCAGCACATGCCCG
770 TTCTCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATATGGCACCAGCACATGCCCG
* * *
21376782 AGCCTAGCATGTGCAGCCGTAACCCTCGGTCC-GATCTGATCTTAGACTGGGAATGAACTCCGTA
834 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCGTA
21376846 TG
898 TG
* * *
21376848 C-----C-----T-AA----G--T--C--A-T---CCCACGAAATGAGCGCGCGTGCGCTCAGCA
1 CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * * *
21376888 GGCCAGAGGGGCGGGATACGCAAGCTGAGGATCGGTCGGGTCCCCATCTGCGTGCTACCGATCCT
66 GGCCAGAGGGACGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTT
* ** ** *
21376953 GTTATCGTAACCCTCGAGCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
131 GCTGCCACAACCCTCG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
21377018 CGACGAAAC-A---AGCAGGCGGGCGGGCGGGCACTACGACGGCCAGAGAGACGGGATGCGCAAG
195 CGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
21377079 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
21377144 TTTTATGGCTTGTAAATTCATAC
325 TTTTATGGCTTGTAAATTCATAC
21377167 GATTTTTGAA
Statistics
Matches: 3414, Mismatches: 380, Indels: 245
0.85 0.09 0.06
Matches are distributed among these distances:
865 16 0.00
866 43 0.01
867 67 0.02
868 16 0.00
869 2 0.00
870 1 0.00
872 1 0.00
874 1 0.00
875 121 0.04
878 2 0.00
879 1 0.00
885 1 0.00
886 4 0.00
887 234 0.07
888 661 0.19
889 710 0.21
890 267 0.08
891 30 0.01
892 21 0.01
893 69 0.02
894 56 0.02
896 6 0.00
897 5 0.00
898 49 0.01
899 130 0.04
900 57 0.02
901 20 0.01
902 535 0.16
903 21 0.01
904 1 0.00
905 58 0.02
907 1 0.00
908 2 0.00
909 124 0.04
910 32 0.01
911 49 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGACGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCTT
GCTGCCACAACCCTCGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
GAAGGATTTTTGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCCCCTCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA
TGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:21375968 original size:26 final size:26
Alignment explanation
Indices: 21375932--21375984 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21375922 CCAATCTGAT
21375932 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21375958 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21375984 C
1 C
21375985 CAATCAACAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21380348 original size:26 final size:26
Alignment explanation
Indices: 21380319--21380371 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21380309 CTGGTTTGAA
21380319 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21380345 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
21380371 C
1 C
21380372 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:21380751 original size:902 final size:903
Alignment explanation
Indices: 21377193--21385261 Score: 9021
Period size: 906 Copynumber: 9.0 Consensus size: 903
21377183 TGCAGTTCCA
* * * * *
21377193 GATTTTTTAAAAATTTTTT-GGAAAGAG-TTTGGCCCCAATCCTGGTAGACGTGATCCTTCTATT
1 GATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
* * *
21377256 TTTGTTGGCATGCACAAAAACAATTC-GCTAAAAACTGGAAGTGTACAAGATTTTGTGACCACTT
65 TTTTTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * * * *
21377320 GAAAAAAGTGTCCCCATTTCAGACTCTTTAATCGCTACTAGCAACAAACCTATAAAATCTCAAAT
129 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * *
21377385 GCGT-TTTAAAGGGGTGTGAGTTTTCGAGGTTTGATGTGGGATAGGGGGCCAATATAAGGGCCAA
194 GC-TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* ** *
21377449 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG--CCCCCCAATCGTCGAAACCCCAA
258 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAA
* * * * ** * * *
21377512 TGACGTCGATCAGGTTCTCCGACGATGCTTCGGTGATGGTGCCCCGAG-GAAGAAAAATTCGACA
323 TGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCTAGCGAAGAAAAATGCGGCA
* * * * * * * **
21377576 CTAGCACATGCTCGAGCCCAGGATGTGCTACTGCAACCCTCGGTCCAGTTTGATCTTAGACTGGG
387 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGT-CGGTCCGATCTTAGACTGGG
* * *
21377641 AATGAACTGC-GTGTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAG
451 AATGAACT-CTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * *
21377705 CGTGCGGGCACTCAGTCGGCTAGAGGGGTGGGATGCACAAGCCG-GGGATCG-GCAGAGTCCCCC
515 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGAGGGATCGATC-GGGTCCCCC
* * *
21377768 TCTGCGTGCTGCCGATCCTGATACCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAAC
579 TCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * * *
21377833 TCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCAGGCGGGCAGGCGGGCAGTAC-TTCAGCC
644 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGGCGGGCGGGCACTACGCT-GGCC
* *
21377897 AGAGAGACGGGATGCACAAGTCGTGGATCGATAGGGTGGTAGGT-AGGTTTAGGCACATCTTCAT
708 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGA-GTTTAGGCACATCTTCAT
21377961 ATTT-T-TGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
772 ATTTCTATG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* **
21378024 ACGTGAAGTTTCATGGCAAAACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
835 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGT
***
21378089 TCAT
900 TTGG
* * * *
21378093 GATTTTTTAAAATTTTTTTGGAAGGAGTTTTGTCCCC-AACCTGGTAGACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
* * * *
21378157 TTCTTGGCGTGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGA
66 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
21378222 AAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGC
131 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * *
21378287 TCTTTAAGCGCGTGTGAGTTCTCGAGGTTTGAAGAGGTATAGGGGGCCAATATAAGGGCCAAGTA
196 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * **
21378352 CCAGCACCCATTGCACATCATGTGCGCACACCTCCCCCG-GCCCCCTGATCGTCGGAACCCCAAT
261 CCAGCACCCATCGCACATCATGTGCGCACA-C-CCCCCGACCCCCCCGATCACCGGAACCCCAAT
* * * * * * * * * * * * *
21378416 GCCGCCAGTACCCTA-ATGTCGTCGGTCAGGTTCTCTGGCGATGCT--TCGA-TGAAGAACAATG
324 GCCGCCGGT---C-AGGT-TC-TCCGAC-GATGCTCCGACGATGGTGCCCTAGCGAAGAAAAATG
* * * * * * *
21378477 CAGCACTAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCGGTTCGGTCTGATCTTCGA
382 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-TCGGTCCGATCTTAGA
* *
21378542 CTGGGAATGAACTGC-GTATGTTTAGACTGGGAAT-AAGCTCCGTATGCCTAAGTCAACCCATGA
446 CTGGGAATGAACT-CTGTATGCTTAGACTGGGAATGAA-CTCCGTATGCCTAAGTCAACCCACGA
* * * * * * * *
21378605 AATGAGCGTGCGGGTGGTCAGCCGGCCAGAGGGGTGGGATGCACAAGGCG-GGGATCAACCGGTT
509 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGAGGGATCGATCGGGT
* * * * * *
21378669 CCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTTTGGT-TCGATCTTAGACTGGGA
574 CCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGATCTGGTCT-GATCTTAGACTGGGA
* ** * * * * *
21378733 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGTGGGCAGGCGGGCGGACGCTACAC
638 ATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGGCGGGCGGGCACTAC-G
* * * * *
21378798 CTGG-AAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTTAGACACATC
702 CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATC
*
21378862 TTCATATTTC----T-----T--CATTTTTATGGCTTGTGAATTCATACAATGGTCCCTTAAGCC
767 TTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * ** * *
21378916 TTCACGTGAAGTTTAATGGCAGGACGACTTGTTTTCTATTTTTCATGACTTTT-GAAACATTTTT
832 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA-TTTTCAAAAC-TTTTT
* *
21378980 -CAGTTCGG
895 ACGGTTTGG
* * *
21378988 GATTTTTTAAAATTTTCTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAACCTTGTATT
1 GATTTTTTAAAATTTT-TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
* * * *
21379053 TTTGTTGGCATGCACAAAACAACTT-AGCTAAAAACTCTAAGTGTACAAGATTTTGTGATCATTT
65 TTTTTTGGCATGCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
21379117 GAAAATAGTGTCACCATTTCATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
129 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * **
21379182 GCCCTTTAA-GGGGTGTGAGTTCTCTAAATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
194 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * ***
21379246 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCAGA--CCCCTGATTGTCGGAACCCCAAT
259 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAAT
** * *
21379309 GCCGCCGGTCAGGTTCTCCGGTGATGCTCC-AGCGATGGTGCCC-CGATGAAGAAAAATGCGGCA
324 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCTAG-CGAAGAAAAATGCGGCA
* * * *
21379372 CCAGCACATGCCCAAGCCTAGCATGTGCTACCGTAA-CC-C--TC-G---G----T---CT-GG-
387 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCGGTCCGATCTTAGACTGGGA
* * *
21379420 -T---C-C--AAT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAAGAGCG
452 ATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
** *
21379477 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCG-GGGATCGATCGGGTCCCCCTCT
517 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGAGGGATCGATCGGGTCCCCCTCT
* * * * *
21379541 GCGTGCT-ATCGATCCTGCTACCACAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTC
582 GCGTGCTGCT-GATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTC
*
21379605 CGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGTAGGCCGGCAGGCGGGCGGGCGGTCGGG
646 CGTATGCCTAAGCCAACCGACGAAAC--G-A-GC------G--GGCAGACGGGC--G-GG-CGGG
* * * * * * * *
21379670 CACTGCGTTGGCTAGAGAGACGGGATGCGCGAGCCATAGATTGATAGGGTGGTAGGTGGGTTTAG
695 CACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAG
* ***
21379735 GCACATCTTCATATTTGTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
760 GCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
21379800 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGACTTTCGAAAC
825 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAAC
*
21379865 TTTTTACGGTTTGA
890 TTTTTACGGTTTGG
* * * * * *
21379879 GATTTTTTAAAATTTTTTCAGAAGGAGTTTTTGACCCAAACTTTGTATACGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
*
21379944 TTTTTGGCATGGACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
66 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
21380009 AAAAAGGGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
131 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
21380074 TCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTA
196 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* ** * ** *
21380139 CCAGCACCCATCACACATCATGTGCGTGCACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGT
261 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGC
* * * * *
21380204 CGCCGGTCAAGTTCTCCGGCGATGCACCGACGATGGTGCCCTAGCGAAGTAAAATGTGGCACCAG
326 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTAGCGAAGAAAAATGCGGCACCAG
* ** *
21380269 CACATGCCCGAGCCCAACATGTGCTGCCGCAACCCTCAGTCTGGTTTGAACTTAGACTGGGAATG
391 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTC-GGTCCGATCTTAGACTGGGAATG
* * *
21380334 AACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAACGAGCATGC
455 AACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * * * *
21380399 GGTCGCTCAGTCGGCCAGAGGGGCAGGAAGCACCAGTCGAGGG-TCGGTCGGGTCCCCTTCTGTG
520 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGAGGGATCGATCGGGTCCCCCTCTGCG
* * *
21380463 TGCTGCTGATCTTGCTGCCGCAACCCTCGATCTGGT-TCAATCTTA-ATTGGGAATGAACTCCGT
585 TGCTGCTGATCCTGCTGCCGCAACCCTCGATCTGGTCT-GATCTTAGACTGGGAATGAACTCCGT
*
21380526 ATGCCTAAGCCAACTGACGAAACGAGCGGGCAGACGGGCGGGCGGGCACTACGCTGGCCAGAGAG
649 ATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGGCGGGCGGGCACTACGCTGGCCAGAGAG
* *
21380591 ATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCTCATCTTCATATTTCTA
714 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTA
21380656 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
779 TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
** * * *
21380721 TTTGTGGCAAGACGACTCATTTTTTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGA
844 TTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGG
* ***
21380781 GATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGTGTCAAACTTGGTAGACATGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
*
21380846 TTTTTGGCATGCAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
66 TTTTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
21380911 AAAGAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGGAGCAAACCT-TCAAAATCTCAAAT
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT-AAAATCTCAAAT
21380975 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
194 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* *
21381040 TACCAGCGCCCATCGCACATCATGTGCG--CA------GACCCCCCCGATCACCGGAACCCTAAT
259 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAAT
* ** * *
21381097 GCCGCCGGTCAGGTTCTCTGGTGATGCTTCGACGATGGTGTCCCTA-CGAAGAAAAATGTGGCAC
324 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG-CCCTAGCGAAGAAAAATGCGGCAC
* * * *
21381161 CAGCACAAGCCCGAGCCCAGCAAGTGCTGCCGAAACCCTCAGTCCAGTCCGATCTTAGACTGGGA
388 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGT-CGGTCCGATCTTAGACTGGGA
* * *
21381226 ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGGAACGAGCG
452 ATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * * * * *
21381291 TGCGGTCGCTCAGTCTGCTAGAGGGGCGAGATGCATAAG-CCAGGGATCGGTCGGGTTCCCCCTC
517 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGAGGGATCGATCGGG-TCCCCCTC
* * * * ** * ** *
21381355 TGCATGCTGCCGATCTTGCTACCGCAACCCTC-AGTCCAGACCAATGTTAGACTGGGAATGAACT
581 TGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACT
* *
21381419 CCTTACGCCTAAGCCAATCGACGAAACGAGCGGACGAGCGGACGAGCGACGAGCAGATGGGGCGG
645 CCGTATGCCTAAGCC-A---AC----CGA-C-GA--A----ACGAGCG--G-GCAGA-----CGG
* * * * *
21381484 GTGGGCGGGCACTATGTTGGCCAGAGAGGCGGGATACGCAAGCCGTGGATCGATA-GGTGGTAGG
686 GCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *** ** *
21381548 TGGGGTTTGGGCACATCTTTCATAATTTCTGCATGCCAATAACATTTTTTATTGCTTGTAAATTC
751 T-GAGTTTAGGCACATC-TTCAT-ATTTCTATGTGCCAATGCCA-TTTTTATGGCTTGTAAATTC
*
21381613 ATACAATGGT-CCTTAAGCCTTCACGTGAAG-TTCATGGCAAGATGACTCATTTTCTATTTTTCA
812 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
* **
21381676 GGATTTTTGAAACTTTTTACGGTTTGG
877 CGATTTTCAAAACTTTTTACGGTTTGG
* * * * * **
21381703 GATTTTATAAAATTTTTTCGGAAGGTGTTTTGGCCTCGAACTTGTTAGATGTGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
* *
21381768 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTGA
66 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
21381833 AAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGC
131 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
21381898 TCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCACTATAAGGGCCAAGTA
196 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * ** *
21381963 CCAGCACCCATCGCACATCATGTGTGCACACCCCCCAACCCCCCCGATCATTGGAACCCCAATGT
261 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGC
* * * *
21382028 CGTCGGTCAGGTTCTCCGACGATGCTTCGACGATGGTGCGCCGA-CGAAGAAAAATGCGACACCA
326 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC-CCTAGCGAAGAAAAATGCGGCACCA
* * * *
21382092 GCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCT-TGATCTGATCCGATCTTAGACTGGGAA
390 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG-TC-GGTCCGATCTTAGACTGGGAA
** * *
21382156 TGAACTCCATATGCTTAGAGTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGT
453 TGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * *
21382221 GCGGGCGCTCAGCCGGCCAAAGGGGCAGGATGCACAAG-CCAGGGATCGATCGGGT-CCCCTCTG
518 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGAGGGATCGATCGGGTCCCCCTCTG
* * * * *
21382284 TGTGCTG-TCGATCTTGCTGCCGTAACCCTCTGTTC-GGTCTGATCTTAGATTGGGAATGAACTC
583 CGTGCTGCT-GATCCTGCTGCCGCAACCCTC-GATCTGGTCTGATCTTAGACTGGGAATGAACTC
* *
21382347 CGTATGCCTAAGCCAACCGATGAAACGAGC-GG--G-CGGGCGGGCGGGCAGTACG-TCGGCCAG
646 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGGCGGGCGGGCACTACGCT-GGCCAG
* * * * *
21382407 AGAGATGGGATGCGCGAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCGTATT
710 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATT
* * **
21382472 TCTATGTGCCAATGCCATTTTTATGGTTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACAAG
775 TCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* ** * ** *
21382537 AAGTTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTTGG
840 AAG-TTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGG
* *
21382602 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTATAAATGATCCTTGTATTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
* * * *
21382667 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTTTGACCGTTTGA
66 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
21382732 AAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAGCAAGCCTGTAAAATCTCAAATGC
131 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
21382797 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
196 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * *
21382862 CCAGCTCCCATCACACATCATGTGCGCACACCCCTCCAACCCCCCC-ATCACCGGAACCCCAATG
261 CCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGACCCCCCCGATCACCGGAACCCCAATG
* * * * *
21382926 CCGCCGGTCAGGTTCTCCGACGATGCTCTGACGATGG-GGCCTCGATGAAGAAAAATACGGCACC
325 CCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTAG-CGAAGAAAAATGCGGCACC
*** * *
21382990 AGCACATGCCCGAGAGTAGAATGTGCTGTCGCAA-CC-C--TC-G---G----T---CT-GG--T
389 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCGGTCCGATCTTAGACTGGGAAT
* *
21383037 ---C-C-G-AT-CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATG
454 GAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG
* * * * **
21383095 CGGGCGTTCAGCGGGCCAGAGGGGCGGGATGCGCAAGTCG-GGGATCGACCATGTCCCCCTCTGC
519 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGAGGGATCGATCGGGTCCCCCTCTGC
* * * * ** *
21383159 GTGCT-ATCGATCCTGCTGCTGCAACCCTTGATCCGGTCCAATCTTAGACTGGGAATGAACTCTG
584 GTGCTGCT-GATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCG
* * * *
21383223 TATGCCTAAGCCAACCGACAAAACGAGC--G--GACGGGCAGGCAGGCACTACG-TCGGCCCGAG
648 TATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGGCGGGCGGGCACTACGCT-GGCCAGAG
* *
21383283 AGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAAGTGAGTTTAGGCACATCTTCATATTTC
712 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTC
* *
21383348 TACGTGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
777 TATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * * *
21383413 GATTCATGGCAAGACGACTCGTTTTGTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGG
842 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGG
* * * *
21383475 GATTTTTTAAAATTTTTTTGAAAGGAGTTTTAGG-CCC-AACTTGGGAGATATGATCCTTGTATT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GGCCCCAAACTTGGTAGACATGATCCTTGTATT
* * *
21383538 TTTCTTGGCATGCACAAAAAAACTCAGCTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTTG
65 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
**
21383603 AAAAAAGTGTCCCCATTTCAGACACTTTAATGAATACTGGCAGCAAACCTGTAAAATCTCAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
21383668 CTC--T-------T-T-A-------A-----G--G-GGG-T-------CAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
21383699 ACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGA-----TCG-T---CGGAACCCCAATG
260 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATG
* * ** * *
21383755 CTGCCAGTCAGGTTCTTAGACGATGCTCCGACGATGGTG-CCTCGACGAAGAAAAATGCAGCACC
325 CCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTAG-CGAAGAAAAATGCGGCACC
* * * * *
21383819 AGCACATGCCCGAACCCAGCATATGCTGCCGTAACCCTCGGTCCGGTCCGATGTTAGACTGGGAA
389 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGT-CGGTCCGATCTTAGACTGGGAA
* * *
21383884 TGGACT-TCGTATGCTTCGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCG
453 TGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * * ** *
21383948 TACGGGCGCTAAGCCAGCCAGAGGGGTGGGATGCGTAAGTCG-GGGATC-AGTTGGGTCCCCCTC
517 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGAGGGATCGA-TCGGGTCCCCCTC
* * * * * * *
21384011 TACGTGCTACCGATCCTGCTACCACAACCCT-TAGTCTGGTCTGATCTTAGACTAGGAATGAACT
581 TGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACT
* * * * * * * *
21384075 CCGTATGCCTAAGCC-ACCGACGAAATGAACGGGCGGGCGGACGAGCGGGCGGACAGTATGCCGA
645 CCGTATGCCTAAGCCAACCGACG--A--AACGAGCGGGCAGACGGGCGGGCGGGCACTACGCTGG
*
21384139 CCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCA
706 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCA
*
21384204 TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCA
771 TATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
*
21384269 CGTGAAGTTTCATGGCAAGACGACTCATCTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTT
836 CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTT
*
21384334 CGG
901 TGG
* * * *
21384337 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAATCTTGATTGACATGATCCTTGTCTTT
1 GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT-ATT
* * *
21384402 TTTTTTGGCATGCCCAAAAAAATTCAGCTAAAAACTGGAAGTGTACAAGATGTTGTGACCATTTG
65 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
21384467 AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCGAACCTGTAAAATCTTAAATG
130 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * **
21384532 CTCTTTAAGGGGGTGCGAGTTCTCAAACTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
195 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
** *
21384597 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGGCCCGCCGATCACCGGAACCCCAAT
260 ACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCCCGATCACCGGAACCCCAAT
** * * * * * *
21384662 GCCGCCTGGTCAGGTTCTCCGGTGATGCTCC-AGTGATGGTGGTCC-GGTGATGAAAAATGTGGC
324 GCCGCC-GGTCAGGTTCTCCGACGATGCTCCGA-CGATGGT-GCCCTAGCGAAGAAAAATGCGGC
* * * **
21384725 ACCAGCACATACTCGAGCCCAGCTTGTGCTGTTGCAACCCTCAGTCGGATCCGATCTTAGACTGG
386 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCGG-TCCGATCTTAGACTGG
* * * * * *
21384790 GAATGAA-TTTCGTATGCTTAGACTAGGAAAGAACTCCGTATGCCAAAGTCAACCCACAAAACAA
450 GAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* ** * * * * * *
21384854 GCGTGCAGGCGCTCAGTTGGTCAGAGTGGTGGGATGCACAAGCCGA-GGATCGACCGGGTTCCCC
514 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGAGGGATCGATCGGGTCCCCC
** * *
21384918 TCTGCGTGCTGCCAATCCTACTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAAC
579 TCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAAC
* * * * * * ** * **
21384983 TCCGTATGCCTAAGCCACCCGACGAAATGAACGGGCGGGCGGGCGAGCGGATAGTACGCCAGCCA
644 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGGCGGGCGGGCACTACGCTGGCCA
* *
21385048 GAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTCGTAGGTGAGTTTAGGCACATCTTCATAT
709 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATAT
* * * *
21385113 TTCTGCT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAATCCTTCACA
774 TTCT-ATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * *
21385177 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCG
838 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTG
21385242 G
903 G
21385243 GATTTTTTAAAATTTTTTC
1 GATTTTTTAAAATTTTTTC
21385262 AGACCCTTGG
Statistics
Matches: 6184, Mismatches: 716, Indels: 532
0.83 0.10 0.07
Matches are distributed among these distances:
829 93 0.02
830 3 0.00
831 1 0.00
832 2 0.00
833 1 0.00
834 1 0.00
835 1 0.00
837 3 0.00
838 50 0.01
842 1 0.00
845 3 0.00
846 5 0.00
847 1 0.00
848 1 0.00
849 1 0.00
851 1 0.00
853 1 0.00
854 11 0.00
855 161 0.03
856 1 0.00
858 6 0.00
860 1 0.00
861 3 0.00
862 235 0.04
863 19 0.00
864 309 0.05
865 5 0.00
866 3 0.00
867 1 0.00
868 3 0.00
870 1 0.00
871 1 0.00
872 146 0.02
873 185 0.03
874 236 0.04
875 1 0.00
876 9 0.00
877 2 0.00
878 1 0.00
879 5 0.00
880 69 0.01
881 1 0.00
882 3 0.00
883 2 0.00
884 2 0.00
885 2 0.00
886 1 0.00
887 12 0.00
888 4 0.00
889 12 0.00
890 226 0.04
891 197 0.03
893 133 0.02
894 14 0.00
895 343 0.06
896 184 0.03
897 209 0.03
898 59 0.01
899 509 0.08
900 257 0.04
901 13 0.00
902 268 0.04
903 227 0.04
904 3 0.00
905 7 0.00
906 597 0.10
907 10 0.00
908 30 0.00
909 277 0.04
910 12 0.00
911 8 0.00
912 1 0.00
913 7 0.00
914 2 0.00
915 4 0.00
916 7 0.00
917 2 0.00
918 42 0.01
919 135 0.02
920 14 0.00
921 261 0.04
922 126 0.02
923 39 0.01
924 29 0.00
926 1 0.00
927 66 0.01
928 6 0.00
929 237 0.04
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCGATCACCGGAACCCCAATGC
CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTAGCGAAGAAAAATGCGGCACCAG
CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCGGTCCGATCTTAGACTGGGAATGA
ACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
GGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGTCGAGGGATCGATCGGGTCCCCCTCTGCGT
GCTGCTGATCCTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGCCAACCGACGAAACGAGCGGGCAGACGGGCGGGCGGGCACTACGCTGGCCAGAGAGAC
GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTATG
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
CATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGG
Found at i:21381243 original size:26 final size:26
Alignment explanation
Indices: 21381214--21381266 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21381204 CCAGTCCGAT
21381214 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21381240 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21381266 C
1 C
21381267 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21381457 original size:8 final size:8
Alignment explanation
Indices: 21381444--21381472 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
21381434 AATCGACGAA
21381444 ACGAGCGG
1 ACGAGCGG
21381452 ACGAGCGG
1 ACGAGCGG
21381460 ACGAGC-G
1 ACGAGCGG
21381467 ACGAGC
1 ACGAGC
21381473 AGATGGGGCG
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 7 0.33
8 14 0.67
ACGTcount: A:0.28, C:0.28, G:0.45, T:0.00
Consensus pattern (8 bp):
ACGAGCGG
Found at i:21382179 original size:26 final size:26
Alignment explanation
Indices: 21382143--21382195 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21382133 CTGATCCGAT
21382143 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21382169 CTTAGAGTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21382195 C
1 C
21382196 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21384818 original size:26 final size:26
Alignment explanation
Indices: 21384780--21384832 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21384770 CGGATCCGAT
* * * *
21384780 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
21384806 CTTAGACTAGGAAAGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
21384832 C
1 C
21384833 CAAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:21385704 original size:473 final size:476
Alignment explanation
Indices: 21384806--21385734 Score: 1231
Period size: 473 Copynumber: 2.0 Consensus size: 476
21384796 ATTTCGTATG
* *
21384806 CTTAGACTAGGAAAGAACTCCGTATGCCAAAGTCAACCCACAAAACAAGCGTGCAGGCGCTCAGT
1 CTTAGACTAGGAAAGAACTCCGTATGCCAAAGTCAACCCACAAAACAAGCGTGCAGGCGCCCAGC
* * * ** *
21384871 TGGTCAGAGTGGTGGGATGCACAAGCCGAGGATCGACCGGGTTCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCAGGATGCACAAGCAGAGGATCGACCGGGTTCCCCTCTGCGTGCTGCCAATCC
** * *
21384936 TACTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAC
131 TACTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAA
* * * * * *
21385001 CCGACGAAATGAACGGGCGGGCGGGCGAGCGGATAGTACGCCAGCCAGAGAGACGGGATGCGCAA
196 CCAACGAAAAGAACAGGCGGGCGGGC-AGCGGACACTACGCCAGCCAGAGAGACGGGATGCACAA
* * * * *
21385066 GCTGTGGATCGATAGGGTCGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCA
260 GCCGTGGATCGACAGCGTCGTAGGTGAGTTTAGGCACATCTTCAAATTTCTGATTGCCAATGCCA
* * *
21385131 TTTTTATGGCTTGTAAATTCATACAATGGTTCCTTAATCCTTCACATGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
*
21385196 GACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
390 GACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
21385261 CAGACCCTTGGTCTGGCCCGAT
455 CAGACCCTTGGTCTGGCCCGAT
* * * * ** *
21385283 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCAGGTGCCCAGC
1 CTTAGACTAGGAAAGAACTCCGTATGCCAAAGTCAACCCACAAAACAAGCGTGCAGGCGCCCAGC
** * * * * *
21385348 CGGCCAGAGGGGCAGGATGCGTAAGTTAG-GGATCGGCTGGG-TCCCTCTCTGCGTGTTGCCGAT
66 CGGCCAGAGGGGCAGGATGCACAAG-CAGAGGATCGACCGGGTTCCC-CTCTGCGTGCTGCCAAT
* ** * *
21385411 CCTGCTGCCGTAATCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCTGTACGCCTAAGCC
129 CCTACTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCC
* * * *
21385476 AACCAACGAAAAGAGCAGGCGTGCGGGC-G-GG-CACTACGTCGGCCAGAGAGACGGGATGCACA
194 AACCAACGAAAAGAACAGGCGGGCGGGCAGCGGACACTACGCCAGCCAGAGAGACGGGATGCACA
* * *
21385538 AGCCGTGGATCGACAGCGTGGTAGGTGGGTTTAGGTACATCTTCAAATTTCT-ATATGCCAATGC
259 AGCCGTGGATCGACAGCGTCGTAGGTGAGTTTAGGCACATCTTCAAATTTCTGAT-TGCCAATGC
*
21385602 CATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 CATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAG
** ** ** *
21385667 ACGACTTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTGGGGATTTTTTAAAATTTT
388 ACGACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
21385732 TTC
453 TTC
21385735 GGAAGGAGTT
Statistics
Matches: 388, Mismatches: 61, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
472 1 0.00
473 201 0.52
474 2 0.01
475 1 0.00
476 4 0.01
477 178 0.46
478 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.27
Consensus pattern (476 bp):
CTTAGACTAGGAAAGAACTCCGTATGCCAAAGTCAACCCACAAAACAAGCGTGCAGGCGCCCAGC
CGGCCAGAGGGGCAGGATGCACAAGCAGAGGATCGACCGGGTTCCCCTCTGCGTGCTGCCAATCC
TACTGCCACAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAA
CCAACGAAAAGAACAGGCGGGCGGGCAGCGGACACTACGCCAGCCAGAGAGACGGGATGCACAAG
CCGTGGATCGACAGCGTCGTAGGTGAGTTTAGGCACATCTTCAAATTTCTGATTGCCAATGCCAT
TTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
ACTCATTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
AGACCCTTGGTCTGGCCCGAT
Found at i:21387043 original size:26 final size:26
Alignment explanation
Indices: 21387007--21387059 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21386997 CCGATTCGAT
21387007 CTTAGACTGGGAATGAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* *
21387033 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
21387059 C
1 C
21387060 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:21387936 original size:26 final size:26
Alignment explanation
Indices: 21387907--21387959 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21387897 CCAATCCGAT
21387907 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21387933 CTTAGAGTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21387959 C
1 C
21387960 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21388426 original size:903 final size:897
Alignment explanation
Indices: 21386158--21388834 Score: 3828
Period size: 903 Copynumber: 3.0 Consensus size: 897
21386148 CCGGTCCAAT
* *
21386158 CTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
21386223 CGGTCAGAGGGGTAGGATACGCAAGTCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGTCGATCC
66 C-GTCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCC
* * *
21386288 TGCTGCCACAACCTTCGATC-CAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 TGCTGCCGCAACCCTCGATCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
21386352 ATCGATGAAACGAGCGGGCGAGC---GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
194 ATCGATGAAACGAGCGGGCG-GCGGGGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAA
*
21386414 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCTATGCCA
258 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
21386479 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACAC
323 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACAC
** * * *
21386544 GACTCGTTTTCTATTTTTCGTGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTTAAATTTTTT
388 GACTCGTTTTCTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
21386609 TGGAAGG-TGTTTTGG-CCTAAA-TTGGTAGACGTGATCCTTATATTTTTGTT-G---GCAC---
453 CGAAAGGAT-TTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
21386664 GC-A--CA-A-AAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCAATTT
517 ACAATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-ATTT
* * *
21386724 TAGATACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTCTGA
581 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGA
* *
21386789 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATA
646 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
21386854 TCATGTGCGCACACCCCCTGGCCCCCCCGATCGTCGGAACCCTAATGCCCGTCGGTCAAG---T-
711 TCATGTGCGCACACCCCCCGGCCACCCCGATCGTCGGAACCCTAAT-ACCGTCGGTCAAGTTCTC
* *
21386915 -----T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACTAGCACATGCCTGAGCCCAG
775 CGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG-CCAG
* * * * *
21386974 CATGTGCTGCCGTAACCCTCGGTCCGATTCGATCTTAGACTGGGAATGAAATCCATATG
839 CATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
21387033 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
21387098 CGGCTAGAGGGGTAAGATGCGCAAGCCGAGGATCGGTCGGGTCCTCCTCTGCGTGTTGCCGATCC
66 CGTC-AGAGGGGTAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCC
** * * * * *
21387163 TGCTATCGCAACCCTCGATCTGGTCTGATCTTAGACTGGTAATTAACTCCATATGCCTAAGCCAA
130 TGCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
21387228 TCG-TCGAAACGTGCGGGC-G-GGCGGGCGGGCACTACGTCGACCAGAGAGACTGGATGCGCAAG
195 TCGAT-GAAACGAGCGGGCGGCGGGGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAG
*
21387290 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGGGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * *
21387355 TTTTATGGCTTGTAAATTCATACAATGATCCCTGAAGCCTTCATGTGAAGTTTCATGGCAACACG
324 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACG
* * *
21387420 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTC
389 ACTCGTTTTCTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* * *
21387485 GAAAGGAGTTTTGGCGCTAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAC
454 GAAAGGATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAC
* *
21387550 AATTCAGATAAAAACTCAAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGTCCTCATTTTA
519 AATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC-CATTTTA
*
21387615 GACACTTTAATGGCTA-TCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTATGAG
583 GACACTTTAATGGCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAG
* *
21387679 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCGCAT
647 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
21387744 CATGTGCGCACAGCCCCCCGGCCACCCCGATCGTTGGAACCCTAATACCGTCGGTCAAGTTCTCC
712 CATGTGCGCACA-CCCCCCGGCCACCCCGATCGTCGGAACCCTAATACCGTCGGTCAAGTTCTCC
* *
21387809 GACGATGCTCCGACGATGGTGCCCCGACGAAGAGAAATGTGGCACCAGCACATGCCCAAGCGCAG
776 G-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC-CAG
* *
21387874 CATGTGCTGCCGCAACCGTTGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATG
839 CATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * **
21387933 CTTAGAGTGGGAATGAACTTCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
21387998 CAGTCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGCCAGATCCCCCTCCATGTGCTGCCGATCC
66 C-GTCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCC
* *
21388063 TGCTGCCGCTACCCTC-AGTCTGATCCAATCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCC
130 TGCTGCCGCAACCCTCGA-TCTGATCCGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCC
* * **
21388126 AACCGATGAAACGAGCGGGCGGCGGGAGGGCGGGCACTACATCGACCAGAGAGACGGGATGTACA
193 AATCGATGAAACGAGCGGGCGGCGGG-GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCA
* * * *
21388191 AGCCATGGATCGATAGGGTGGTACGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
21388256 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGA
322 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACA
* *
21388321 CGACTCATTTTCTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
387 CGACTCGTTTTCTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
21388386 TCAAAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
452 TCGAAAGGATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
21388451 A-ACATTCAGCTAAAAAATTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
517 ACA-ATTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATT
* *
21388515 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
580 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATG
* * *
21388580 AGTT-TTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATTGCA
645 AGTTCTT-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * *
21388644 CATCATGTGCGCACACCCCCCGG-CACCCCGATCGCCAGAACCCTAATGCCGTCGGTCAGGTTCT
709 CATCATGTGCGCACACCCCCCGGCCACCCCGATCGTCGGAACCCTAATACCGTCGGTCAAGTTCT
* * *
21388708 CCGGCGATGCTTCGACGATGGTGCCTCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCT
774 CC-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC-
*
21388773 AGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
837 AGCATGTGCTGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATG
21388834 C
1 C
21388835 CTAAGCCAAC
Statistics
Matches: 1599, Mismatches: 154, Indels: 72
0.88 0.08 0.04
Matches are distributed among these distances:
873 1 0.00
874 3 0.00
875 413 0.26
876 5 0.00
877 27 0.02
878 1 0.00
881 4 0.00
884 1 0.00
885 1 0.00
887 2 0.00
888 2 0.00
889 194 0.12
890 31 0.02
892 1 0.00
899 4 0.00
900 279 0.17
901 155 0.10
902 14 0.01
903 458 0.29
904 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGTCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGTGTGCTGCCGATCCT
GCTGCCGCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAT
CGATGAAACGAGCGGGCGGCGGGGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGAC
TCGTTTTCTATTTTTCAAGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA
AAGGATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAA
TTCAGATAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTTAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCT
TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCACACCCCCCGGCCACCCCGATCGTCGGAACCCTAATACCGTCGGTCAAGTTCTCCGCGAT
GCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCAGCATGTGC
TGCCGCAACCCTCGGTCCAATCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:21390159 original size:6 final size:6
Alignment explanation
Indices: 21390148--21390264 Score: 127
Period size: 6 Copynumber: 20.0 Consensus size: 6
21390138 TATATATATA
*
21390148 TATTTT T-TTTT T-TTTT TATTTT TATTTT CATTTT TATTTT TATTTT
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT
* * * *
21390194 CA-TTT TA-TTT TATTTT TA-TTT TATTTT TATTAT TATTTT ATATATA
1 TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT TATTTT -TATTTT
*
21390240 TATTTT TTTCTTT TATTTT TATTTT
1 TATTTT TAT-TTT TATTTT TATTTT
21390265 AGCTATTTAC
Statistics
Matches: 94, Mismatches: 12, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
5 24 0.26
6 61 0.65
7 9 0.10
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (6 bp):
TATTTT
Found at i:21390265 original size:11 final size:11
Alignment explanation
Indices: 21390148--21390265 Score: 114
Period size: 11 Copynumber: 10.2 Consensus size: 11
21390138 TATATATATA
21390148 TATTTTT-TTT
1 TATTTTTATTT
*
21390158 TTTTTTTATTTT
1 TATTTTTA-TTT
*
21390170 TATTTTCATTTT
1 TATTTTTA-TTT
21390182 TATTTTTATTT
1 TATTTTTATTT
21390193 TCA-TTTTATTT
1 T-ATTTTTATTT
21390204 TATTTTTATTT
1 TATTTTTATTT
21390215 TATTTTTATTAT
1 TATTTTTATT-T
21390227 TATTTTATATATAT
1 TATTTT-TAT-T-T
* *
21390241 ATTTTTTTCTTT
1 -TATTTTTATTT
21390253 TATTTTTATTT
1 TATTTTTATTT
21390264 TA
1 TA
21390266 GCTATTTACT
Statistics
Matches: 92, Mismatches: 8, Indels: 15
0.80 0.07 0.13
Matches are distributed among these distances:
10 7 0.08
11 42 0.46
12 29 0.32
13 4 0.04
14 5 0.05
15 5 0.05
ACGTcount: A:0.19, C:0.03, G:0.00, T:0.79
Consensus pattern (11 bp):
TATTTTTATTT
Found at i:21391351 original size:17 final size:16
Alignment explanation
Indices: 21391317--21391356 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
21391307 TTAGATTAGG
*
21391317 TTTATTTAATATTCTT
1 TTTATTTAATATTATT
*
21391333 TTTATCTTAATTTTATT
1 TTTAT-TTAATATTATT
21391350 TTTATTT
1 TTTATTT
21391357 TTGTTTTACT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.23, C:0.05, G:0.00, T:0.72
Consensus pattern (16 bp):
TTTATTTAATATTATT
Found at i:21391354 original size:6 final size:6
Alignment explanation
Indices: 21391343--21391413 Score: 56
Period size: 6 Copynumber: 11.5 Consensus size: 6
21391333 TTTATCTTAA
* * *
21391343 TTTTAT TTTTAT TTTT-G TTTTAC TTTTCT TTATT-T TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT-TTAT TTTTAT TTTTAT
*
21391390 TTATTTT TTTTAT TATTCTAT TTT
1 TT-TTAT TTTTAT T-TT-TAT TTT
21391414 CTCTAAATAA
Statistics
Matches: 53, Mismatches: 6, Indels: 11
0.76 0.09 0.16
Matches are distributed among these distances:
5 6 0.11
6 32 0.60
7 11 0.21
8 4 0.08
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:21391356 original size:11 final size:11
Alignment explanation
Indices: 21391332--21391397 Score: 55
Period size: 11 Copynumber: 5.9 Consensus size: 11
21391322 TTAATATTCT
* *
21391332 TTTTATCTTAA
1 TTTTATTTTTA
21391343 TTTTATTTTTA
1 TTTTATTTTTA
21391354 TTTT-TGTTTTA
1 TTTTAT-TTTTA
* *
21391365 CTTTTCTTTATTT
1 -TTTTATTT-TTA
21391378 TTTTATTTTTA
1 TTTTATTTTTA
21391389 -TTTATTTTT
1 TTTTATTTTT
21391398 TTTATTATTC
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
10 10 0.22
11 20 0.43
12 13 0.28
13 3 0.07
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.79
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:21391374 original size:27 final size:25
Alignment explanation
Indices: 21391344--21391413 Score: 68
Period size: 27 Copynumber: 2.6 Consensus size: 25
21391334 TTATCTTAAT
*
21391344 TTTATTTTTATTTTTGTTTTACTTTTC
1 TTTATTTTTATTTTT-ATTTA-TTTTC
*
21391371 TTTATTTTTTTATTTTTATTTATTTTT
1 TTTA--TTTTTATTTTTATTTATTTTC
21391398 TTTATTATTCTATTTT
1 TTTATT-TT-TATTTT
21391414 CTCTAAATAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
25 2 0.05
26 2 0.05
27 18 0.49
28 4 0.11
29 11 0.30
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.80
Consensus pattern (25 bp):
TTTATTTTTATTTTTATTTATTTTC
Done.