Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 126 of 195
Found at i:21509584 original size:26 final size:26
Alignment explanation
Indices: 21509544--21509596 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21509534 CCGGCCTGAT
21509544 CTTAGACTGAAAATGAACTCCATATG
1 CTTAGACTGAAAATGAACTCCATATG
** *
21509570 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAAAATGAACTCCATATG
21509596 C
1 C
21509597 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAAAATGAACTCCATATG
Found at i:21511186 original size:26 final size:26
Alignment explanation
Indices: 21511157--21511209 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21511147 CCGGTTTGAT
*
21511157 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21511183 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21511209 C
1 C
21511210 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21512098 original size:26 final size:26
Alignment explanation
Indices: 21512062--21512114 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21512052 CCAATCCAAT
*
21512062 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21512088 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21512114 C
1 C
21512115 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21513000 original size:26 final size:26
Alignment explanation
Indices: 21512961--21513013 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21512951 CTGGTCTGAT
21512961 CTTAGACTGAGAATGAACTCCGCATG
1 CTTAGACTGAGAATGAACTCCGCATG
*
21512987 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGA-GAATGAACTCCGCATG
21513013 C
1 C
21513014 CTAAGTTAAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGCATG
Found at i:21513881 original size:26 final size:26
Alignment explanation
Indices: 21513852--21513904 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21513842 CTGATCCGAT
*
21513852 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21513878 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21513904 C
1 C
21513905 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21514775 original size:26 final size:26
Alignment explanation
Indices: 21514746--21514798 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21514736 CCGATCCGAT
* *
21514746 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
21514772 CTTAGAATGGGAATAAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
21514798 C
1 C
21514799 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATAAACTCCGTATG
Found at i:21515671 original size:26 final size:26
Alignment explanation
Indices: 21515635--21515688 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
21515625 GGTTCGATCT
*
21515635 TAGACTAGGAATGAACTCCGTATGCC
1 TAGACTAGGAATGAACTCCATATGCC
*
21515661 TAGACTGGGAATGAACTCCATATGCC
1 TAGACTAGGAATGAACTCCATATGCC
21515687 TA
1 TA
21515689 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.22, G:0.22, T:0.24
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCATATGCC
Found at i:21516570 original size:26 final size:26
Alignment explanation
Indices: 21516533--21516585 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
21516523 CAGATCTGAT
21516533 CTTAGAATGGGAATCAACTAT-GTATG
1 CTTAGAATGGGAATCAACT-TCGTATG
*
21516559 CTTAGACA-GGGAATGAACTTCGTATG
1 CTTAGA-ATGGGAATCAACTTCGTATG
21516585 C
1 C
21516586 CTAAATCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 22 0.92
27 1 0.04
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATCAACTTCGTATG
Found at i:21517455 original size:26 final size:26
Alignment explanation
Indices: 21517426--21517478 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21517416 CTGGTCCGAT
*
21517426 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
*
21517452 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
21517478 C
1 C
21517479 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATAAACTCCGTATG
Found at i:21518380 original size:26 final size:27
Alignment explanation
Indices: 21518333--21518386 Score: 76
Period size: 26 Copynumber: 2.0 Consensus size: 27
21518323 TCCGATCTTG
*
21518333 GACTGGGAATGAACTTCGTATG-CTAA
1 GACTGGGAATGAACTTCATATGCCTAA
21518359 GACTGGGAATGAA-TTCCATATGCCTAA
1 GACTGGGAATGAACTT-CATATGCCTAA
21518386 G
1 G
21518387 TCAACCCACA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
25 2 0.08
26 18 0.72
27 5 0.20
ACGTcount: A:0.31, C:0.17, G:0.26, T:0.26
Consensus pattern (27 bp):
GACTGGGAATGAACTTCATATGCCTAA
Found at i:21518541 original size:903 final size:902
Alignment explanation
Indices: 21510411--21522382 Score: 16055
Period size: 903 Copynumber: 13.3 Consensus size: 902
21510401 GCCCAGCATG
* * ** * * *
21510411 TGCTGTCGTAACCCTCGGTTTGGTCTGATCTTCGACTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTTTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * ** *
21510476 CCGACCAAACGAACGGGCGCG-CGAGC-AGGCGGGCATTACCCCGATCAGAGAGACAGGATGCGC
66 CCGACGAAACGAGCGGGCG-GACGGGCGA-GC-GGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
21510539 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGAT-CCAATG
128 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CATGCCAATG
* * * *
21510603 CCA-TTTTAGAGGCTTGTAAATTCATGCAACGGTCCCTTAAGCCTTCACGTGAAGTTGCATGGCA
192 CCATTTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * ** *
21510667 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAATTCAAG-TTTTTTAAAATT
256 AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATT
* * * *
21510731 TTTTCGGAAGGCGTTTTGGCCCCAAATTTGGTAGACATGATTCTTGTATTTTTGTT-GCATGCAC
321 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * * * *
21510795 AAAACAATTGAGCAAAAAACTCAAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTATCCCCA
386 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
21510860 TTTCAGACATTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
451 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
21510925 TGAGTTCTCGAGGTTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
516 TGAGTTCTCGAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* ***
21510989 CACATCATGTGCGCACACCCCCCTCAGCCCCCCGATCGTCGGAACCCCAATGTAACCGGTCAGGT
580 CACATCATGTGCGCACACCCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* ** * * * *
21511054 TCTCTGTTGATGCTCGGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAAATGCCCGAG
644 TCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
** * * * **
21511119 CCTGGCATGTGCTACCGCAACCCTTGGTCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGC
709 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
21511184 TTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACTAGCGTGTGGGCACTCAGTC
774 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
21511249 GGCCAGAGGGGCGGGATGCGTAAGTCGGGGATCGATCGTGTCCCCCTCTGCGTGCTGCCGATCC
839 GGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
21511313 TGCTGTCGCAACCCTCGGTACTGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA
1 TGCTTTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
21511378 CTGACGAAACAAGCGGGCGGGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCGGACGGGCGAGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
21511443 GCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
21511508 TTTTTATGGCATGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * * * *
21511573 GACTCGTTTTCTATTTTTCATGATTTTCGAAACCTTCTGTGGTTC-GAGATTTTTTAAAACTTTT
260 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAA-TTTT
* * * * *
21511637 TTCGGAAGGTGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGATGCATAA
323 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
21511702 AAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
388 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
21511767 TTAGACACTTTAATGGCTA-TCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAAGGGGGTG
453 TCAGACACTTTAATGGCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTG
*
21511831 TGAGTTCTC-AGGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
516 TGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * * * *
21511895 CATATCATGTGCGCACACCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCACCGGTCAGGTT
580 CACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
21511960 CTCCGACGATGCTCCGGTGATGGTGCCCCTG-CGAAGAAAAATGCGGCACCAGCACATGCCCGAG
645 CTCCGACGATGCTCCGGTGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * *** * *
21512024 CCCAGAATGTGCTACCGTAACCCTTGGTCCAATCCAATCTTAGATTGGGAATGAACTCCGTATGC
709 CCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
* *
21512089 TTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCC
774 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * ** *
21512154 GGCCAGAGGGGTGGGATGCACAAGCCGAGGATCGGTCGGGTCCCCCTTTGCGTGCTGCCGATCC
839 GGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** ** * * * *
21512218 TGC-TGCTGCAACCCTCATTCTAGTCTGATCTTAAACTAGGAATGAACTCCGTATACCTAAGCCA
1 TGCTTTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
21512282 ACTGACGAAACAAACGGGCGGGCGGGC--G-GGCACTACGCCGGCCAGAAAGACGGCATGCGCAA
65 ACCGACGAAACGAGCGGGCGGACGGGCGAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
21512344 GCCATGGATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
**
21512409 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTGTTGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
21512474 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCAGAATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
* * *
21512539 TGGAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACTAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
21512604 ACATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
21512669 AGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
21512734 TTCTCGAGGTCTGATGAGGGAGAGGGGACCAATATATGGGCCAAGTACCAGCACCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * ** *
21512799 CATGTGCGAACACCGCCCCCAGCCCCCCGATCACCGGAACCCCAATGCTGCCGGTCAGGTTCTCC
585 CATGTGCGCACACC-CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * *
21512864 GACGATGCTCCGACGAAGGTG-CCCGAAGAAGAAAAATGCGGCACCAGCACATGCACGAGCCCAG
649 GACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
21512928 CCTGTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGCATGCTTAGA
714 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * ** * * * *
21512993 CTAGGAATGAACTCCGTATGCCTAAGTTAAGCCACGAAACGAACGTGTAGGCACTTAGCCAGCAA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * ** * *
21513058 GATGGACGAGTTGCGCAAGTCGGGGTTCGGTCGGGTCCCCCTCTACGTGCTGCTGATCC
844 GAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * *
21513117 TGCTGCCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAA
1 TGCTTTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
21513182 CCGACGAAACGA-------G-CGGGC--G-GGTACTACGCTGGCCAGAGAGACGGGATGCGCAAG
66 CCGACGAAACGAGCGGGCGGACGGGCGAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
21513236 TCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-AGCATGCCAATGCCA
131 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTA-CATGCCAATGCCA
* *
21513300 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAACCCTTCAAGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** *
21513365 GATTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
* * * *
21513430 TGGAAGGAATTTTGGCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGCCATGCACAAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
21513495 ATATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTT
* * *
21513560 CAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGCGGGTATGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
21513625 GTTATCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
21513689 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCAGTCAAGTTCTC
584 TCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
21513753 CGACAATGCTCCAGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAACCTA
648 CGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * *
21513818 GCATGTGCTGCCACAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
713 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * ** * * *
21513883 ACTGGGAATGAATTCCATATGCCTAAGTCAACCCATAAAATGAGCGTGCGGGCACCCAGCCGGCC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * **
21513948 AGAGGGACGGGACGCGCAAGACGGGGATCGGCCGAGTCCCCCTCTATGTGCTGCCGATCC
843 AGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
21514008 TACTATCGCAACCCTCGGTCTGGTCCGATCTTAG--TGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTTTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
21514071 CTGATGAAACGA--GGG-GG-CGGGCAAGCGAGCACTACGCAGGCCAAAGAAACGGGATGCACAA
66 CCGACGAAACGAGCGGGCGGACGGGCGAGCG-GCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
21514132 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACTTGCCACTGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
*
21514197 TTTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
195 -TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
21514262 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTCCAGGATTTTTTAAAA-TTTT
259 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
* * * * * * * *
21514326 T-GGAAGGAGTTTTGGTCCTAAACTTGGTAAAAGTGATCCTTTTATTTTTGTTAGAATGCACAAG
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
21514390 AAAATTCAGCTACAAACTCGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
21514455 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
21514519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
21514584 TCATGTGCGCACACCCCCCACGG--CCCCGATCGTCGAAACCCCAACGCCGCCGGTCAGGTTCTC
584 TCATGTGCGCACACCCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
** * *
21514647 CGGTGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCA
648 CGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
21514712 GCATGTGCTGTCGCAACCCTCGGTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAG
713 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * *
21514777 AATGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCGCTCAACCGGCC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * **
21514842 AGAGGGGCGGGATGCGCAAGTCGAGGATCGACCGGGTCCCCCTCTTCGTGCTGTTGATCC
843 AGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * *
21514902 TGCTACCACAACCCTCGGTCTGGT-CGAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTTTCGCAACCCTCGGTCCGGTCCG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
21514966 ACCGAC-AAA--A-C--G-AG-CGGGC--G-GGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
65 ACCGACGAAACGAGCGGGCGGACGGGCGAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * **
21515020 GCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTACATGCCAATGAGA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
21515085 TTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
*
21515150 GACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCAGGATTGTTTT-AAATTTTT
260 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATT-TTTTAAAATTTTT
* ** *
21515214 TCGGAAGGAGTTTAGTTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGTACAAA
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
21515279 AGAATTCAGCTAAAAGCTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
21515344 CAGACTCTTTAATGGCTACTGGCAGCAAACCTG-AAAATTCTCAAATGCTCTTGAAGGGGGTGTG
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-TCTCAAATGCTCTTTAAGGGGGTGTG
* *
21515408 AGTTCTCGAGGTCTGATGAGGGATAGGGGG-CAATATAAGGGCCAAATACCAGCACCCATCGCAC
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
21515472 ATCATGTGTGCACA-CCCCCCGG-CCCCCTATC-ACTGGAACCCCAATGCCGACGGTCAGGTTCT
583 ATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
21515534 CCGAAGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAG-ACATGCCCCAGCCC
647 CCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
** * * *
21515598 AGCATGTGCTATCGCAACCCTCGGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCCTA
712 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
21515663 GACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCAGTCGAC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * **
21515728 CAGAGGGGCGAGATGCGTAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGCTGTTGATCC
842 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
21515789 TGCTATCACAACCGTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTAA
1 TGCTTTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
21515854 CCGATGAAACGAGCGGGCAGG-TGGGC--G-GGCACTACGCCGGCCAGAGAGACGAGATGCGCAA
66 CCGACGAAACGAGCGGGC-GGACGGGCGAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
21515915 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTCCATGCAAATGTCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
21515980 TTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
21516045 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
* *
21516110 CGGAAGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * ** *
21516175 CAATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCATATTCC
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
21516240 AGACACTTTAATGGTTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTATGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * **
21516305 TTTTCCACGTTTGATGAGGGATAGGGGCCCTTTATAAGGGCCAAGTACCAGCACCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
21516370 CATGTGCGCACACCCCCCCAGCACCCCCGATC-ACTGGAACCCCAACGCTGTCGGTCAGGTTCTC
585 CATGTGCGCACACCCCCCCGGC-CCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
21516434 CGATGATGCTCCGGTGATGGTGCCCCGACGAAGAAAATTGCGGCACCAGCACATGCTCGAGCCCA
648 CGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * * * * * **
21516499 GCTTGTGCTGCTGCAACCCTCGGTCAGATCTGATCTTAGAATGGGAATCAACTATGTATGCTTAG
713 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * * * *
21516564 ACAGGGAATGAACTTCGTATGCCTAAATCAACCCACGAAATGAGCGTGCGAGCGTTTAGTCAGCC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * * * * * * * *
21516629 AGAGGGGCGGGATGCGCCAGCCGAGGATCGGCCAGGTTCCCTTCTGCATGCTACCAATCC
843 AGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** *
21516689 TGCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTTTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
21516754 CCGACGAAACGAGAGGGCGGACGGGCGGGCAGGCACTACGTCGGCCAGAGGGATGGGATGCGTAA
66 CCGACGAAACGAGCGGGCGGACGGGCGAGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* ** *
21516819 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA-AGTCTTCGTATTTCTATGTGGCAATGCC
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA-TCTTCATATTTCTACATGCCAATGCC
* *
21516883 ATTTTTATGGCTTGTACATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
21516948 CGACTCGTTTTCTCTTTTTCACCATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
* * * *
21517013 T-GGTAGGAGTTTTGACCCCAAAGTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
21517077 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
21517142 CAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
21517206 GTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
21517271 TCATGT--GCACA------CAGCCCCCCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCC
584 TCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
21517328 GATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAAATGCCCGAGCCCAG
649 GACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
*
21517393 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTAGA
714 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
21517458 ATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGAGTGCGGGCGCTCAACCGGCCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * *
21517523 GAGGGGCGGGATGCGCAAGTCGAGGATCGACCGGGTCCCCCTCTCCATGCTGTCGATCT
844 GAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * **
21517582 TTC-TGCTGCAACCCTCAGTCCGATCGGATCTTAGACTGGGAATGAACTTAGTATGCCTAAGCCA
1 TGCTTTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
21517646 ACCGACGAAATGAGCGGGCGGACGGGCGAGCAGGCACTACGCCGGCCAGAGGGATGGGATGCGGA
65 ACCGACGAAACGAGCGGGCGGACGGGCGAGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* ** *
21517711 AGCCGTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTATGTGGCAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * *
21517776 ATTTTTATGGCTTGTACATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * **
21517841 CGACTCGTTTTCTATATTTCACCATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
* *
21517906 TCGGAAGGAGTTTTGGCCCAAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
21517971 AAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
21518036 CAGACACTTTACTGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
21518101 GTTC-CTAAGGTTTGATGACGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
519 GTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** ** * *
21518165 ATCATGTGCGCACACTGCCTTGGCCCCCCGATCGTCGGAACCTCAATGCCGCCAGTCAGGTTCTC
583 ATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
21518230 CGACGATGCTCTGGTGATGGTGCCCCGGCGAAGAAATATGCGGCACCAGCACATGCCCGAACCTA
648 CGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* * * *
21518295 GCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTGGACTGGGAATGAACTTCGTATGCTAAG
713 GCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * * * *
21518360 ACTGGGAATGAATTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCACCCAGCTGGCC
778 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * * **
21518425 AGAGGGGCGGGATGCGCAAGACGGGGATCGGCCGAGTCCCCCTCTATGTGCTGCCGATCC
843 AGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * *
21518485 TATTTTCGGAACCCTCGGTCCGGTCCAATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTTTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
21518550 CCGATGAAACGAGGGGGCGGGCGGGC-AGGCGGGCACTACGCCGACCAAAGAGACGGGATGCGCA
66 CCGACGAAACGAGCGGGCGGACGGGCGA-GC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * *
21518614 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCACTACC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * *
21518679 ATTTTTTATGTCTTGTAAATTCATAAAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAG
194 A-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
21518744 ACAACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
258 ACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
* * * * * * *
21518809 TTCGGAAGGAGTTTTGGCGCTAAACTTGGTAAAAGTGATCCTTTTATTTTTTTTGGAATGCACAA
323 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * *
21518874 GAAAATTCAGCTAAAAAGTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
388 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
21518939 TTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAA-GGGATGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
21519003 AGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAA
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
21519068 ATCATGTGCGCACACCCCCCACGGCCCCCCTGATCGTCGGAACCCCAATGCCACCGGTCAGGTTC
583 ATCATGTGCGCACACCCCCC-CGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
** * * *
21519133 TCCGGTGATGCTCCGGCGATGGTACCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
646 TCCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
** * * *
21519198 CAGCATGTGCTATCGTAACCCTCGGTCCGGTCCGATATTAGACTGGGAATGAACTCCGTATGCTT
711 CAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
21519263 AGAATGGGAATGAATTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAACCGG
776 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
** ** * *
21519328 CCAGAGGGGCGGGATGCATAAGTCAAGGATCGACTGGGTCCCCCTCT-CTGTGCTGCTGATCC
841 CCAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGC-GTGCTGCCGATCC
* ** * *
21519390 TGC-TGCTGCAACCCTCGGTTTGGTCGGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTTTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
21519454 ACCGATGAAACGA-------G-C-GG-GTG-GGCACTACGCTGGCCAGAGAGACGGGATGCGCAA
65 ACCGACGAAACGAGCGGGCGGACGGGCGAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
21519508 CCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCCACATGCCGATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * *
21519573 TTTTTATGGGTTGTAAATTCATACAATGGTCCCTTACGCCTTCAGGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
21519638 GACTTGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCTGTTCAAGATTTTTAAAAATTTTTT
260 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
* ** * **
21519703 CGGAAGGATTTTTGTTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTCACATGCACAAAA
325 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
21519768 AAATTCAGCTAAAAACTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
390 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
** * * * *
21519833 AGACTGTTTAATGGCTACTGGCAACAAACCTGAAAAATCTCAAATGCTCTTGATGGGGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
21519898 TTCTCGAGGTCTAATGAGGGATAGGGGGCCAATATATGGGCCAAATACCAGCACCCATCGCACAT
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
21519963 CATGTGTGCAGACCCCCCTGG--CCCCTATC-ACAGGAACCCCAATGCCGACGGTCAGGTTCCCC
585 CATGTGCGCACACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * *
21520025 GAAGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAG-ACATGCCCCAGCCCAG
649 GACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
** * * * *
21520089 CATGTGCTATCGTAACCCTCAGTCTGGTTCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGA
714 CATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
** *
21520154 CTGGGAATGAACTCCACATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
779 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * ** *
21520219 GAGGGGCGGGATGCGTAAGCCGGGGATCGATCGAGTCCCCCTCTGCATGCTGTTGATCT
844 GAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * ** *
21520278 TGCTATT-GCAACTATCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTA
1 TGCT-TTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
21520342 ACCGACGAAACGAGCGGGC--A-GGTGGGAG-GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
65 ACCGACGAAACGAGCGGGCGGACGG-GCGAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * *
21520403 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTTATATTTCTCCATGCAAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
*
21520468 ATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
21520533 CGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
259 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
* *
21520598 TCGGAAGGAGTTTTGGCCCCAAACCTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAA
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
21520663 ACAATTCAGCTAAAAAGTCTAAGTGTACAAGAGTTTT-TGACCATTTGAAAAAAGTGTCCCCATT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
21520727 CCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
21520791 AGTTCTCGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
21520856 ATCATGTGCGCACACCCCCCACGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
583 ATCATGTGCGCACACCCCCC-CGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
** ** * *
21520921 CCGGGGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCAAATGCTCGAGCCC
647 CCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* *
21520986 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCTTA
712 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * * **
21521051 GAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGTTCAACCTAC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * *
21521116 CAGAGGGGCGGGATGCGCAAGTCGAGGATTGACCGGGTCCCCCTCTTCGTGCTGCCGATCT
842 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
21521177 TGC-TGCTGCAACCCTCAGTCCAGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
1 TGCTTTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
21521241 ACCGATGAAACGAGCGGGCGGACGGGCGAGCAGGCACTACACCGGCCAGAGGGATGGGATGCGGA
65 ACCGACGAAACGAGCGGGCGGACGGGCGAGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
21521306 AGCCTTGGATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCC
129 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
21521371 ATTTTTATGGCTTGTACATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGA
194 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * ** *
21521436 CGACTCGTTTTCTATATTTCACCATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTAAAAATTTT
259 CGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTT
* * *
21521501 TCGGAAGGAGTTTTGGCCCGAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAA
324 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
21521566 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTT
389 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
21521631 CAGACACTTTACTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTGA
454 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
21521696 GTTCTCAAGGTTTGATGACGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCAG-AC
519 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCAC
** ** *
21521760 ATCATGTGCGCACACTGCCTTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTTAGGTTCT
583 ATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * *
21521825 CCGACGATGCTCTGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAACCT
647 CCGACGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
** * * * *
21521890 AGCATGTGCTGCCGCAACCCTTAGTCTGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTAA
712 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
21521955 GACTGGGAATGAATTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACCCAGCCGGC
777 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
21522020 CAGAGGGGCGGGACGCGCAAGACAGGGATCGGCCGGGTCCCCTTCTACGTGCTGCCGATCC
842 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** ** * * * * *
21522081 TATTTTCAAAACTCTCAGTCCGGTCCAATCGTATACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTTTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
21522146 CCGAAGAAACAAGCGGGCAGG-TGGGC--G-GGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGC-GGACGGGCGAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * **
21522207 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTCCACGTAAATGCCA
130 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
21522272 TTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGAC
195 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** * *
21522337 GACTCGTTTTCTATTCTTCATGATTTTCGAAACTTTTTACGGTTCA
260 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCA
21522383 TGGCATGCAC
Statistics
Matches: 9780, Mismatches: 1163, Indels: 256
0.87 0.10 0.02
Matches are distributed among these distances:
887 362 0.04
888 434 0.04
889 326 0.03
890 99 0.01
891 608 0.06
892 375 0.04
893 732 0.07
894 500 0.05
895 683 0.07
896 569 0.06
897 112 0.01
898 197 0.02
899 670 0.07
900 663 0.07
901 210 0.02
902 335 0.03
903 1070 0.11
904 974 0.10
905 779 0.08
906 82 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
TGCTTTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGACGGGCGAGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
CGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
GGGGCGGGATGCGCAAGTCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
Found at i:21519264 original size:26 final size:26
Alignment explanation
Indices: 21519235--21519286 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21519225 CGGTCCGATA
*
21519235 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGAATGGGAATGAACTCCGTATGC
*
21519261 TTAGAATGGGAATGAATTCCGTATGC
1 TTAGAATGGGAATGAACTCCGTATGC
21519287 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCGTATGC
Found at i:21520174 original size:26 final size:26
Alignment explanation
Indices: 21520122--21520174 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21520112 CTGGTTCGAT
**
21520122 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCACATG
*
21520148 CTTAGACTGGGAATGAACTCCACATG
1 CTTAGACTAGGAATGAACTCCACATG
21520174 C
1 C
21520175 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCACATG
Found at i:21521050 original size:26 final size:26
Alignment explanation
Indices: 21521021--21521073 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21521011 CCGGTCCGAT
*
21521021 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
*
21521047 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATAAACTCCGTATG
21521073 C
1 C
21521074 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATAAACTCCGTATG
Found at i:21521976 original size:26 final size:27
Alignment explanation
Indices: 21521928--21521982 Score: 78
Period size: 26 Copynumber: 2.1 Consensus size: 27
21521918 ATCTGATCTT
*
21521928 AGACTGGGAATGAACTTCGTATG-CTA
1 AGACTGGGAATGAACTTCATATGCCTA
21521954 AGACTGGGAATGAA-TTCCATATGCCTA
1 AGACTGGGAATGAACTT-CATATGCCTA
21521981 AG
1 AG
21521983 TCAACCCACA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 2 0.08
26 19 0.73
27 5 0.19
ACGTcount: A:0.33, C:0.16, G:0.25, T:0.25
Consensus pattern (27 bp):
AGACTGGGAATGAACTTCATATGCCTA
Found at i:21522800 original size:25 final size:26
Alignment explanation
Indices: 21522750--21522801 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
21522740 CTGGTCCGAT
**
21522750 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21522776 CTTAGACT-GGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21522801 C
1 C
21522802 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.29, C:0.19, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21523146 original size:824 final size:829
Alignment explanation
Indices: 21521553--21523205 Score: 2433
Period size: 824 Copynumber: 2.0 Consensus size: 829
21521543 GTATTTTTGT
*
21521553 TGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
21521618 AGTGTTCCCATTTCAGACACTTTACTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTT
* *
21521683 TTAGGGGGTGTGAGTTCTCAAGGTTTGATGACGGATAGGGGGCCAATATAAAGGCCAAGTACCAG
131 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGACGGATAGGGGGCCAATATAAAGGCCAAATACCAG
* ** * *
21521748 CACCCATCAGACATCATGTGCGCACACTGCCTTGGCCCCCCCGATCGTCGGAACCCCAATGCCGC
196 CACCCATCAGACATCATGTGCGCACACTCCCCCGG-CCCCCCGATCCTCGGAACCCCAATGCCGA
* ** * *
21521813 CGGTTAGGTTCTCCGACGATGCTCTGGTGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCAC
260 CGGTCAGGTTCTCCGACGATGCTCTGGCAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCAC
* * * *
21521878 ATGCCCGAACCTAGCATGTGCTGCCGCAACCCTTAGTCTGATCTGATCTTAGACTGGGAATGAAC
325 ATGCCCCAACCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAAC
*
21521943 TTCGTATGCTAAGACTGGGAATGAATTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGG
390 TTCGTATGCTAAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGG
* * * *
21522008 CACCCAGCCGGCCAGAGGGGCGGGACGCGCAAGACAGGGATCGGCCGGGTCCCCTTCTACGTGCT
455 CACCCAACCGGCCAGAGGGGCGGGACGCGCAAGACAGGGATCGACCGAGTCCCCCTCTACGTGCT
** *
21522073 GCCGATCCTATTTTCAAAACTCTCAGTCCGGTCCAATCGTATACTGGGAATGAACTCCGTATGCC
520 GCCGATCCTATGATCAAAACTCTCAGTCCGGTCCAATCGTAGACTGGGAATGAACTCCGTATGCC
** *
21522138 TAAGCCAACCGAAGAAACAAGCGGGCAGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGC
585 TAAGCCAACCGAAGAAACAAGCGGGCAGGTGGGCGGGCACTACACCGACCAGAGAGACGGGATGC
* * * *
21522203 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTCCACGTAAAT
650 GCAAGCCATGGATAGATAGGGTGGTAGGTGGATTTTGGCACATCTTCATATTTCTCCACGCAAAT
21522268 GCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCA
715 GCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCA
**
21522333 AGACGACTCGTTTTCTATTCTTCATGATTTTCGAAACTTTTTACGGTTCA
780 AGACGACTCGTTTTCTATTCTTCACAATTTTCGAAACTTTTTACGGTTCA
*
21522383 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
21522448 AGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTT
** * * *
21522513 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACTAG
131 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGACGGATAGGGGGCCAATATAAAGGCCAAATACCAG
* *
21522578 CACCCATC-GCACATCATGTGTGCACAC-CCCCCGG-CCCCCTATCACT-GGAACCCC-ATGCCG
196 CACCCATCAG-ACATCATGTGCGCACACTCCCCCGGCCCCCCGATC-CTCGGAACCCCAATGCCG
* *
21522638 ATGGTCAGGTTCTCCGACGATGCTCTGGCAATGGTGCCCTGACGAAGAAAAATACGGCACCAG-A
259 ACGGTCAGGTTCTCCGACGATGCTCTGGCAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCA
* ** * *
21522702 CATGCCCCAGCCCAGCATGTGCTGTTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAA
324 CATGCCCCAACCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAA
* **
21522767 C-TCTGTATGCTTAGACT-GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCG
389 CTTC-GTATGCTAAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCG
* * * * * * * *
21522830 GGCACTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATTGATCGAGTCCCCCTCTGCGTG
453 GGCACCCAACCGGCCAGAGGGGCGGGACGCGCAAGACAGGGATCGACCGAGTCCCCCTCTACGTG
** * * ** * *** *
21522895 CTGTTGATCCTGTGATCACAAC-CGTTGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTAT
518 CTGCCGATCCTATGATCAAAACTC-TCAGTCCGGTCCAATCGTAGACTGGGAATGAACTCCGTAT
* * *
21522959 GCCTAAGCTAACCGACGAAACGAGCGGGCAGGTGGGCGGGCACTACACCGACCAGAGAGACGGGA
582 GCCTAAGCCAACCGAAGAAACAAGCGGGCAGGTGGGCGGGCACTACACCGACCAGAGAGACGGGA
* *
21523024 TGCGCAAGTCATGGATAGATAGGGTGGTAGGTGGATTTTGGCACATCTTCATATTTCTCCATGCA
647 TGCGCAAGCCATGGATAGATAGGGTGGTAGGTGGATTTTGGCACATCTTCATATTTCTCCACGCA
* *
21523089 AATGCCATTTTTATGGCTTCTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
712 AATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATG
* * *
21523154 GCAAGATGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTC
777 GCAAGACGACTCGTTTTCTATTCTTCACAATTTTCGAAACTTTTTACGGTTC
21523206 GGGATTTTTT
Statistics
Matches: 734, Mismatches: 85, Indels: 14
0.88 0.10 0.02
Matches are distributed among these distances:
823 1 0.00
824 374 0.51
825 70 0.10
826 61 0.08
827 16 0.02
828 1 0.00
829 5 0.01
830 206 0.28
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (829 bp):
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCAAGGTTTGATGACGGATAGGGGGCCAATATAAAGGCCAAATACCAG
CACCCATCAGACATCATGTGCGCACACTCCCCCGGCCCCCCGATCCTCGGAACCCCAATGCCGAC
GGTCAGGTTCTCCGACGATGCTCTGGCAATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACA
TGCCCCAACCCAGCATGTGCTGCCGCAACCCTCAGTCTGATCCGATCTTAGACTGGGAATGAACT
TCGTATGCTAAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGC
ACCCAACCGGCCAGAGGGGCGGGACGCGCAAGACAGGGATCGACCGAGTCCCCCTCTACGTGCTG
CCGATCCTATGATCAAAACTCTCAGTCCGGTCCAATCGTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCGAAGAAACAAGCGGGCAGGTGGGCGGGCACTACACCGACCAGAGAGACGGGATGCG
CAAGCCATGGATAGATAGGGTGGTAGGTGGATTTTGGCACATCTTCATATTTCTCCACGCAAATG
CCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAA
GACGACTCGTTTTCTATTCTTCACAATTTTCGAAACTTTTTACGGTTCA
Found at i:21523685 original size:26 final size:26
Alignment explanation
Indices: 21523648--21523700 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
21523638 CCGATCCGAT
21523648 CTTAGACTGGGAATCAAC-TCTGTATG
1 CTTAGACTGGGAATCAACTTC-GTATG
*
21523674 CTTAGA-TAGGGAATGAACTTCGTATG
1 CTTAGACT-GGGAATCAACTTCGTATG
21523700 C
1 C
21523701 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 1 0.04
26 21 0.88
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTTCGTATG
Found at i:21524119 original size:902 final size:894
Alignment explanation
Indices: 21522383--21524614 Score: 3163
Period size: 902 Copynumber: 2.5 Consensus size: 894
21522373 TTACGGTTCA
*
21522383 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTTCAAGATTTTGTGACCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
21522448 AGTGTCCCCATTTCAGACTCTTTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
21522513 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACTAG
131 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * **
21522578 CACCCATCGCACATCATGTGTGCACACCCCC-CGGCCCCCTATCACTGGAACCCC-ATGCCGATG
196 CACCCATCGCACATCATGTGCGCACACCCCCGC-CCCCCCGATCACTGGAACCCCAATGCCGCCG
* * *
21522641 GTCAGGTTCTCCGACGATGCTCTGGCAATGGTGCCCTGACGAAGAAAAATACGGCACCAG-ACAT
260 GTCAGGTTCTCCGACGATGCTCCGG--ATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACAT
* * *
21522705 GCCCCAGCCCAGCATGTGCTGTTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC
323 GCCCGAGCCCAGCATGTGCTGATGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * *
21522770 TGTATGCTTAGACT-GGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCA
388 TGTATGCTTAGA-TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCA
* * * * * *
21522834 CTCAACCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATTGATCGAGTCCCCCTCTGCGTGCTGT
452 CTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGAGTCCCCCTCTGCATGCTGC
* * * * *
21522899 TGATCCTGTGATCACAACCGTTGGTCTGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
517 AGATCCTGTGACCACAACCCTTGGCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * *
21522964 AGCTAACCGACGAAACGAGCGGGCAGGTGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGC
582 AGCCAACCGACGAAACGAGCGGGCAGGCGGGCAGGCACTACACCGACCAGAGAGACGGGACGCAC
* *
21523029 AAGTCATGGATAGATAGGGTGGTAGGTGGATTTTGGCACATCTTCATATTTCTCCATGCAAATGC
647 AAGTCATGGATAGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTACATGCAAATGC
*
21523094 CATTTTTATGGCTTCTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
712 CATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
21523159 ATGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
777 ACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGAATTTTTAAAATTTT
* * *
21523224 TTCGAAAGGAGTTTTGGCCCCAAACCTGGTAGACGTTATCCTTGTATTTTTGT
842 TTCGAAAGGAGTTTTGGCCCCAAACCTAGTAGACATGATCCTTGTATTTTTGT
* * * *
21523277 TGGCATGCATAAAACAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGCGACCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
21523342 AGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* ** * * *
21523407 TAAGGCGGTGTGAGTTCTCCACGTTTGATGAGGGATA-GGGGCCATTTATATGGGCCAAGTACCA
131 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA-ATATAAGGGCCAAGTACCA
* * *
21523471 GCACCTATCGCACATCATGTGCGCACACCCCCAGCCCCCCCGAATCACCGGAACCCCAACGCCGC
195 GCACCCATCGCACATCATGTGCGCACACCCCC-GCCCCCCCG-ATCACTGGAACCCCAATGCCGC
* *
21523536 CGGTCAGGTTCTCCGACGATGCTCCAGTGATGGTGCCCCGATGAAGAAAATTGCGGCACCAGCAC
258 CGGTCAGGTTCTCCGACGATGCTCC-G-GATGGTGCCCCGATGAAGAAAAATACGGCACCAGCAC
* * * * *
21523601 ATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATCAAC
321 ATGCCCGAGCCCAGCATGTGCTGATGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAAC
21523666 TCTGTATGCTTAGATAGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAG
386 TCTGTATGCTTAGAT-GGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAG
* ** * * * *
21523731 CGCTCAGTCGGCCAGAGGGGCGGGATGCACCAGCTGGGGATCGACCGGGTTCCCCTCTGCATGCT
450 CACTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGAGTCCCCCTCTGCATGCT
*
21523796 GCAGATCCTGCTG-CCACAACCCTTGGCCTGGTCTGATCTTAGA-TGGGAATGAACTTCGTATGC
515 GCAGATCCTG-TGACCACAACCCTTGGCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * ** * * *
21523859 CTAAGCCAACCGACGAAATGAGCGGGTGGACGGGCGGGCAGGCACTACGTCGGCCAGAGGGATGG
579 CTAAGCCAACCGACGAAACGAGC--G-GG-CAGGCGGGCAGGCACTACACCGACCAGAGAGACGG
* * * **
21523924 GACGCACAAG-CGGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGT
640 GACGCACAAGTC-ATGGATAGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTACAT
* * *
21523988 GCCAATGCCATTTTTATGGCTTGTACATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
704 GCAAATGCCATTTTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* *
21524053 ATGGCAAGACGACTCGTTTTCTATTTTTCACCATTTTTGAAACTTTTTGCGGTTCGGGAATTTTT
769 ATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGAATTTTT
* *
21524118 AAAATTTTTTCGAAAGGCGTTTTGGCCCCAAACTTAGTAGACATGATCCTTGTATTTTTGT
834 AAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACCTAGTAGACATGATCCTTGTATTTTTGT
21524179 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
**
21524243 AGTGTCCCCATTTCAGACACTTTGCTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
21524308 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
131 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
21524373 CACCCATCGCACATCATGTGCGCACACCACCCGACCCCCCCGATCACTGGAACCCCAATGCCGCC
196 CACCCATCGCACATCATGTGCGCACACC-CCCG-CCCCCCCGATCACTGGAACCCCAATGCCGCC
* * *
21524438 AGTCAGGTTCT-C--C-A-G---C-GATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCATATG
259 GGTCAGGTTCTCCGACGATGCTCCGGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATG
* ** * * *
21524494 CCCGAGCCCAGCATGTACT-ATCGCAACCCTCATTTCGGTTCGATCTTAGACTGGAAATGAACTC
324 CCCGAGCCCAGCATGTGCTGAT-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * *
21524558 CGTATGCTTAGTCTGGGAATGAAC-TCTGTATGCCTAAGCCAACCGACGAAACGAGCG
388 TGTATGCTTAG-ATGGGAATGAACTTC-GTATGCCTAAGTCAACCCATGAAACGAGCG
21524615 GGTGGGCGGG
Statistics
Matches: 1187, Mismatches: 129, Indels: 48
0.87 0.09 0.04
Matches are distributed among these distances:
889 3 0.00
890 134 0.11
891 1 0.00
893 8 0.01
894 199 0.17
895 5 0.00
896 15 0.01
897 59 0.05
898 116 0.10
899 133 0.11
900 4 0.00
901 182 0.15
902 328 0.28
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCGCCCCCCCGATCACTGGAACCCCAATGCCGCCGG
TCAGGTTCTCCGACGATGCTCCGGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCC
CGAGCCCAGCATGTGCTGATGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGT
ATGCTTAGATGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAGCACTCA
ACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGACCGAGTCCCCCTCTGCATGCTGCAGAT
CCTGTGACCACAACCCTTGGCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGACGAAACGAGCGGGCAGGCGGGCAGGCACTACACCGACCAGAGAGACGGGACGCACAAGT
CATGGATAGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTACATGCAAATGCCATT
TTTATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGAATTTTTAAAATTTTTTCG
AAAGGAGTTTTGGCCCCAAACCTAGTAGACATGATCCTTGTATTTTTGT
Found at i:21524578 original size:26 final size:26
Alignment explanation
Indices: 21524538--21524590 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21524528 TCGGTTCGAT
21524538 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* * *
21524564 CTTAGTCTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
21524590 C
1 C
21524591 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:21525316 original size:26 final size:26
Alignment explanation
Indices: 21525280--21525332 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21525270 CTGGTCCGAT
*
21525280 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21525306 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21525332 C
1 C
21525333 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21526209 original size:26 final size:26
Alignment explanation
Indices: 21526171--21526223 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21526161 CCTGGTTGAT
*
21526171 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
21526197 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
21526223 C
1 C
21526224 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:21527106 original size:26 final size:26
Alignment explanation
Indices: 21527077--21527129 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21527067 CTGGTCCGAT
* *
21527077 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTAGAAATGAACTCCATATG
21527103 CTTAGACTAGAAATGAACTCCATATG
1 CTTAGACTAGAAATGAACTCCATATG
21527129 C
1 C
21527130 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.34, C:0.21, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTCCATATG
Found at i:21527745 original size:896 final size:892
Alignment explanation
Indices: 21524564--21527806 Score: 4277
Period size: 900 Copynumber: 3.6 Consensus size: 892
21524554 ACTCCGTATG
* *
21524564 CTTAGTCTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCGGGCGTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGC---
* *
21524629 TGGGCACTACGCCT-GCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGG
59 -GGGCACTACGTCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
21524693 TCTAGGCACATCTTCATATTTCT--ATGTTCCAATGCCATTTTTATGGCTTGTAAACTCATTCAA
123 TTTAGGCACATCTTCATATTTCTGCATG--CCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
21524756 TGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
186 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTT
* * * * *
21524821 TTGAAACTTTTTGCGGTTCAAGATTTTTTAAATTTTTTTCGGAAAGAGTTTTGGCGCCAAACTTG
251 TTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * *
21524886 GTAGACATGATCCTTGTATTTTTGTTGGCATGTACAAAAAAACTCAGCTTAAAACTCGAAGTGTA
316 GTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * * *
21524951 CAAGATTTTGTGACCACTCGAAAAAAGTGTCCCCATTTCAGATACTTTAATTGCTACTGGCAGCA
381 CAAGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
21525016 AACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGCTTTGATGAGGGATAGGG
446 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* **
21525081 GGTCAATATAAGGGCAAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCT
511 GGCCAATATAAGGGCAAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCT
* * * * * * **
21525146 AATCACTGGAACGCCAGTGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGATGCCCTAGC
576 GATCACCGGAACACCAATGCCGCCGGTCAGGTTCT-C-GC-ATGCTCCGACGATGGTGCCCCGGC
* * * * ** *
21525211 GAAG-AAAATGTGGCCCCAGCACATGCTCGAGCCCAGCATGTGGTACCGTAACCCTTGGTCTGGT
638 GAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGT
* *
21525275 CCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
703 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTC
* * * *
21525340 AACCCTCGAAACGAGCGTGCGGGCGCTCATCTGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATC
768 AACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * **
21525405 TG-CCGGGTCCCCCTCTACGTACTGTCGATCCTGCTGCCGCAACCCTTGGTCCAGTCTGAT
833 -GATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTAGTCCAAT
* * * *
21525465 CTTAGACTAGGAATGAAGTTCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGCGGGCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-------GCGGGCGGGC
* * *
21525530 GGGCACTACG-CTGGCTAGAGAGACGGGATGCGCAAGACATGGATCGATAGGGTGGTAGGTGGGT
59 GGGCACTACGTCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
21525594 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATCGCTTGTAAATTCAAACAATGG
124 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
21525659 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCATTTTCTATTTTTCATGATTTTTG
189 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
* * *
21525724 AAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTTC-GAAGGATTTTTGGCCCAAAAATTGG
254 AAACTTTTTACGGTTCAG-GATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
*
21525787 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
317 TAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
21525852 AAGATTTCGG-GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
382 AAGATTT-GGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
21525916 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
446 AACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
21525981 GGCCAATATAAGGGCAAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCT
511 GGCCAATATAAGGGCAAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCT
* * * *
21526046 GATCATCGGAACACTAATGCTGCCGGTCAGGTTCTC-C--G----G-CGATGGTGCCCCGACGAA
576 GATCACCGGAACACCAATGCCGCCGGTCAGGTTCTCGCATGCTCCGACGATGGTGCCCCGGCGAA
* * ***
21526103 GAAAAATGCGGGCACCAGAACATGCTCGAGCCCAGCATGTACTGTTTCAACCCTCGGTCCTGGT-
641 GAAAAATGC-GGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGT-CTGGTC
* *
21526167 TGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
704 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
* * *
21526232 ACCCACAAAACAAGCGTGCGGGCGCTCAACCGGCCAG-GGGGCGGGATGCGCAAGCCGAGGATC-
769 ACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * *
21526295 AGTCGGGTCCCCGTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGT-TCGATCCAAT
834 A-TCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTAG-TCCAAT
* *
21526355 CTTAGACTGGGAATGAACTCCGTGTGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC--A
21526420 CGGGCTGGCAC-TACATCGGCCAGAGAGACGGGATGCGCAAGCCGTAGG-TCGATAGGGTGGTAG
64 ----CT---ACGT-C-T-GGCCAGAGAGACGGGATGCGCAAGCCGT-GGATCGATAGGGTGGTAG
*
21526483 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
118 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
21526548 CAATGGTCCCTTAAGCGTTCACGTGAATTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGA
183 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
** *
21526613 TTTTTGAAACTTTTTACCATTAAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
248 TTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
21526678 TTGGTAGACATGATCCTTGTATTTTTTTTTTGGCATGCATAAAATAATTCAGCTAAAAACTCGAA
313 TTGGTAGACATGATCCTTGTA--TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
21526743 GTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGG
376 GTGTACAAGATTTGGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
21526808 CAGCAAACCTATAAAATCTCAAATGGTCTTTAATGGGGTGTGAGTTCTCGA-GTTTGATGAGGGA
441 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * * * * *
21526872 TAAGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCACAAATCATGTGCACACACCCCCCCGC
506 TAGGGGGCCAATATAAGGGCAAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGC
* * * * * *
21526937 CCCCCGATCGCCGAAACCCCAATGCCACCGGTCAAGTTCTCTGACGATGCTCCGACGATGGTGCC
571 CCCCTGATCACCGGAACACCAATGCCGCCGGTCAGGTTCTC-G-C-ATGCTCCGACGATGGTGCC
* * * *
21527002 CCGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCAGT
633 CCGGCGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
* * *
21527067 CTGGTCCGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTAGAAATGAACTCCATATGCCT
698 CTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCT
* * * *
21527132 AAGTCAACCCACGAAACGAGTGTCCGGGCGCTCAGGCCAGCCAGAGGGGCGGGATGCCGCAAGCC
763 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-ACCGGCCAGAGGGGCGGGATG-CGCAAGCC
* * * * * * *
21527197 GGGGATCGATC-GGTCCCCCTCTCCATGCTG-CTGATGC-GCTGTCGTAACCCTTCGTCTTGTCC
826 GGGGATCGATCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTGCCGCAACCCTTGGTCTAGTCC
21527259 AAT
890 AAT
21527262 CTTAGACTGGG-ATGAACTCCTGTATGCCT-AG-CAACCGACGAAACGAGCGGGCGGGC-GGCAC
1 CTTAGACTGGGAATGAACTCC-GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAC
* *
21527323 TACGTCTGGCCAGAGAGACGAGATGCGCAAG-CGTGGAGTCGATAGGGTGGTAGGTGGGTTTACG
65 TACGTCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGA-TCGATAGGGTGGTAGGTGGGTTTAGG
21527387 CACATCTTCATATTTCTGCATGGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
129 CACATCTTCATATTTCTGCAT-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
21527452 TTAAGCCTTCATGTAAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAA
193 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG--AA
* * * *
21527517 AATTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAATCTTGGTAGA
256 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*** *
21527582 TGCGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
321 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
21527647 TTTGGTGACCATTTGAAAAAAAGTGTCCTCATTCCGGACACTTTAATGGCTACTGGCAGCAAACC
386 TTTGGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * * *
21527712 TGTAAAATATCAAATGCTCCTTTATGAGGGTGTGAGTTGTTCCTTGAGGTTTGATGAGGGGATAG
450 TATAAAATCTCAAATGCT-CTTTAAGGGGGTGTGA---GTT-CTCGAGGTTTGATGA-GGGATAG
*
21527777 GGGGCCAATATGAGGGC-AAGTACCAG-ACCC
509 GGGGCCAATATAAGGGCAAAGTACCAGCACCC
21527807 NNNNNNNNNN
Statistics
Matches: 2065, Mismatches: 206, Indels: 143
0.86 0.09 0.06
Matches are distributed among these distances:
883 13 0.01
885 1 0.00
889 18 0.01
890 122 0.06
891 133 0.06
892 10 0.00
893 69 0.03
894 167 0.08
895 294 0.14
896 192 0.09
897 148 0.07
898 2 0.00
899 7 0.00
900 495 0.24
901 67 0.03
902 27 0.01
904 11 0.01
905 29 0.01
906 136 0.07
907 72 0.03
908 35 0.02
909 16 0.01
910 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
ACGTCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTT
TTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTGG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCAAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCTGATCACCGGA
ACACCAATGCCGCCGGTCAGGTTCTCGCATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCG
GCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCC
TCTACGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTAGTCCAAT
Found at i:21529584 original size:26 final size:26
Alignment explanation
Indices: 21529555--21529607 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21529545 GTTGACTTAG
21529555 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21529581 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21529607 G
1 G
21529608 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21531358 original size:26 final size:26
Alignment explanation
Indices: 21531328--21531380 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21531318 GTTGACTTAG
21531328 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21531354 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21531380 G
1 G
21531381 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21531894 original size:886 final size:880
Alignment explanation
Indices: 21528851--21533863 Score: 6092
Period size: 900 Copynumber: 5.7 Consensus size: 880
21528841 GTTCGTGATC
*
21528851 GGGGGCTGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-C
1 GGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
21528915 CCCTATCCCTCATCAAACCACGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
21528980 TGTTGCCAGTAGGCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
130 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
21529045 TACACTTTGAGCTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCATGTCTAC
195 TACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATACC-AAAAAAATACAAGGATCACGTCTAC
*
21529110 CAAGTTTGGGGTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCA-AGAAGTTTCA
259 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-GAACCGCATA-AAGTTTCA
* *
21529174 AAAATGGTGAAAAATAGAAAACGAGTCGTCTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
322 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
21529239 ATTGTATGAATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
387 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
21529304 CCACCTACCACCCTATCGATCCACGGCTTGCG-----CGTCTCTCTGGCCGGCGTAGTGCCCGCC
452 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * **
21529364 CACC-CGCTCGCTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAAATTGA
517 CGCCAC-C-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATTG-
* *** * * * * ** * *
21529428 ACCAGATTGAGAGTTACGGCATCAGGATCGACAACACGCAGAGGGGGACCCGGTCGTTCCCTGGC
579 GCCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * *
21529493 TTGCGCATCCCGCCCCTTTGGCCGTCTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCA
644 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* *
21529558 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCTA
709 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA
* * *** *
21529623 GGGTTGCTACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC---GCATTTTTGTTCACTGAGG
774 GGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGGGGCACCATCG--C-C---GG
* * * * *
21529685 CACCATCGTCGGAGAACTTGACCAGCGACATTGGGGTTCCGACGATCGG
833 -AGCATCGTCGGAGAACCTGAACGGCGGCATTGGGGTTCCGACGATCGG
* * * *
21529734 GGGGGCCAGGGGGTGTGTGCAAATGATGT--GA--GATG--GG----T-G--C-TATATTGGCCC
1 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
21529785 CCTATGCCTCATCAAACCTTGAGAACTTACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
66 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
21529850 GCTACCAGTAGACATTAAAGTGTCTGGAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGT
131 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * * *
21529914 ACAC-TTGAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACCAAAATACAAGGATCACATATAT
196 ACACTTTG-AGTTTTTAGCTGAATTTTTTTATGCATACCAA-AAAAATACAAGGATCACGTCTAC
* * * * *
21529978 CAAGTTTGGGACCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCTAAACCGCAAAAAGTTTCAA
259 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-GAACCGCATAAAGTTTCAA
* * * *
21530043 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGAACA
323 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
21530108 TTGTATGAATTTACAAGCCATGAAAATGGCATTGTCATGTAGAAATATGAAGATGTGCCTAAACC
388 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * * * * *
21530173 CAACTACTC-CCCAATCGATCCACGGCTTGCACTTCCCATCTCTCAGGCCGACGTAGTGCCCGCC
453 CACCTAC-CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
**
21530237 CGCCAGCCCATTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT-TAGATTGG
517 CGCCA-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAT-GATTGG
** * * * ** * * * * **
21530301 ACTGGATCAAGGGTTACAGCAGTTGGATTGGCAGCACGTAGTGGGGGACCCCG-CCGATCCCCAC
580 -CCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGA-CCCGACCGATCCCCGG
* * * * * * ** * *
21530365 CTTGTGCATCCCACCCCTCTGGCCGACCGAACGCCCGCATGCTTATTTCGTGAGTTGACTTTGGC
643 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *** *
21530430 ATACGGGGTTCATTCCCAGTCTAAGCATATAAAGTTCATTCCCAGTCTAAGATCGGATCAGACCG
708 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCG
* * *
21530495 AGGGTTGCGGCAGCACATGCT-GGACTCGAGCAGGTGCTGGTGTCGTATTATTCTTCACCGGGGC
773 AGGGTTGCGACAGCACATGCTAGG-CTCGGGCATGTGCT-G-GT-G------------CCGGGGC
* * * * *
21530559 ACCATCGTCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG
822 ACCATCGCCGGAGCATCGTCGGAGAACCTGAACGGCGGCATTGGGGTTCCGACGATCGG
* * * *
21530618 GGGGGCCGGGGGGATGTGCACACATGATGCGCAATGGGTGCAGGTACTTGGCCCTTATATTGGCC
1 GGGGGCCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
21530683 CCTTATCCCTCATCAAACCTCAAGAACTCACGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
21530748 TGCTGCTAGTAGACATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
130 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
21530813 TACACTTCT-A-TTTCTTAGCTGAATTTTTTTATGCAAACCAATAAAAATACAAGGATCACGTCT
195 TACACTT-TGAGTTT-TTAGCTGAATTTTTTTATGCATACCAA-AAAAATACAAGGATCACGTCT
* * * *
21530876 ACCAAGTTTGCGGCCAAAACTGCTTCCGAAAAAATTTTAAAAAATCCCGAACTGCATAAAGTTTT
257 ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGCATAAAGTTTC
21530941 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
321 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* *
21531006 CATTGTATGAATTTACAAGCCATAAAAACGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAA
386 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* *
21531071 CCCACCAACCACCCTATCGATCCACGGCTAGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
451 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* ** * * *
21531136 TCGCCTACCCGCTCGTTTCACCGATTGGCTTAGGCATACGGAGTTCATTCCAAGTCTATGATCAG
516 CCGCC-ACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGAT-TG
*
21531201 GCCAGACCAAGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
579 GCCAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGC
* * ** * *
21531266 TTGCGTATCCTGCCCCTCTGGCCGGCTGAGCGCTTGCACGCTCATTTCATGGGTTGACTTAGGCA
644 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
*
21531331 TACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CTGGACCG
709 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GGACCG
21531395 AGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGGGGCACCATCGCCGGAGCAT
773 AGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGGGGCACCATCGCCGGAGCAT
** ** *
21531460 CGTCGGAGAACCTGAACGATGGCATTGGCATTCCGACGATCGAA
838 CGTCGGAGAACCTGAACGGCGGCATTGGGGTTCCGACGATCG-G
* *
21531504 GGGGGTCGGGGAGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
21531569 CCCTATCCCTCATAAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTTCTGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
21531634 TGCTGCCAGTAGCCGTTAAATTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
130 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * * * *
21531699 TACACTTTGAGTTTTTTGGTGAATTTTTTTATGCATACCAACAAAAGTATAAGGATCATGTCTTC
195 TACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATACCAA-AAAAATACAAGGATCACGTCTAC
* *
21531764 CAATTTTGGGGCCAAAACTCCTTCCGAAAAAGTTTTAAAAAATCTCGAACCGCATAAAGTTTCAA
259 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACCGCATAAAGTTTCAA
* *
21531829 AAATCGTGAAAAATAGAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCA
323 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *** * *
21531894 TTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCACATAAAAATATAAAAGATGTGCCTAAAC
388 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATAT-GAAGATGTGCCTAAAC
* *
21531959 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGCCGCCGTAGT----GCC
452 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * ** *
21532020 CG-CA--TGCTCATTTCGTCGGCTGGCTTAGGCATATGGAGTTCATTCATAGTCTAAGATTGGAC
517 CGCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATTGG-C
* * * * *
21532082 CAGACCGAGGGTTGCGGCAGCAGGATTGGCAGCACACAGAGGGGGACCCGACCGATCCTCGGCTT
581 CAGACCAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT
* * * *
21532147 GTGCATCCCGCCCCTCTGTCCGGCTGAGTGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATA
646 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
21532212 CGGAGTTCATTTCCAGTGTAAGCATACGCAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGG
711 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGG
* ** * *
21532277 GTTGCGACAGCACATGCTGGGCTCAGGCATGCACTGGTGCCGCATTTTTCTTCGTCGGGGACCAT
776 GTTGCGACAGCACATGCTAGGCTC-GG---GCA-T-GT---GC-TGGTGC--CG--GGGCACCAT
** * *
21532342 CGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATT-GGGTTCCGACGATTGG
827 CGCCGGAGCATCGTCGGAGAACCTGAACGGCGGCATTGGGGTTCCGACGATCGG
** * *
21532395 GGGGGCCCGGGGTTTGTGCGCACATTGATGTGCGATGGCTGCTGGTAATTGGGCCCTTATATTGC
1 GGGGG-CCGGGGGGTGTGCGCACA-TGATGTGCGATGGGTGCTGGTACTT-GGCCCTTATATTG-
* *
21532460 GCCCCCTATCCCTCATCAAGA-CTCAAAGCACTTCACACCCCCTTAAAGGAAGGCATTTTGAGAT
62 GCCCCCTATCCCTCATCAA-ACCTC-GAGAAC-TCACACCCCCTTAAA-G-A-GCA-TTTGAGAT
*
21532524 TTTACAGCGTTTGCTGCCAGTAGCCAATTAAAGTGTCTTGAAATGGGAACACTTTTTTCAAATGG
120 TTTACAG-GTTTGCTGCCAGTAGCC-ATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAAATGG
* * * * *
21532589 TCACAAAATCTTGTATACTTTG-TTTTTTATGCTTGAATTCTTTTTGTGCATGCCGAAAAAATAC
182 TCACAAAATCTTGTACACTTTGAGTTTTTA-GC-TGAATT-TTTTTATGCATACCAAAAAAATAC
* * *
21532653 AAGGAATCACATATACCAAG-TTGGGGCCAAAACTCCTTTCCGAAAAAATTTTAAAAAAATCCAA
244 AAGG-ATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCGAAAAAATTTT-AAAAAATCCGA
**
21532717 ACCGCATTAAAGTTTTGAAAATCCG-GAAAAATAGGAAAACGAGTCGTCTTGCCATTGAAACTTC
306 ACCGCA-TAAAGTTTCAAAAAT-CGTGAAAAATA-GAAAACGAGTCGTCTTGCCA-TGAAACTTC
* * *
21532781 ACGTCAAGGCTTAA-GGACCATTGTATGAATTTACAAGCCTTAAAAAATGGCATGGGCATGCAGA
367 ACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGA
21532845 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
431 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * * * *
21532910 CTGTCCAGCGTAGTGCTCGCCCGCCCGCCCGCTCGTTTCATTGGTTGGCTTAGGCATACGGAGTT
496 CTGGCCGGCGTAGTGCCCGCCCG-CCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * ** *
21532975 CATTCCCTGTCTATGATCAGGCTGGACCAAGGGTTGCGGTAGCAGGAAT-GACAGCACGCAGAGG
560 CATTCCCAGTCTATGAT-TGGCCAGACCAAGGGTTGCGGCAGCAGG-ATCGACAGCACGCAGAGG
* * * * * *
21533039 GGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCTCTCTGGCTGGTTGAGTAG-CTGCACGCTC
623 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG-CGCCCGCACGCTC
* *
21533103 GTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
687 GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
* * * * * *
21533168 GTTTAAGATCAGATCGGATCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTCCC
752 GTCTAAGATCGGATCGGACCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCC
* * * *
21533233 GGGGCACCATCGTCGGAGCATCGTCGGAGAACAT-AACCGGCAGCATTGGGGTTCCGACGATCGA
817 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAA-CGGCGGCATTGGGGTTCCGACGATCGG
* * *
21533297 GGGGGTCGCGGGGGTGTGCACACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
1 GGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
21533362 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCGTAAAGAGCATTTGAGATTTTACAGGTT
65 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * * *
21533427 TGCTACCATTAGCCGTTAAATTGTCTGAAATGGGGACACGTTTTTCAAATGGTCACAAAATCTTG
130 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * ** * *
21533492 TACACTTTGAGTTTTCAGCTGAATTTTTTTTTGCATACCAAAAAAAGTGGAAGGATCATGTTTAC
195 TACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATACCAAAAAAA-TACAAGGATCACGTCTAC
* ** * *
21533557 CAAGTTTGGAGCCAAAACGGCTTCCGAAAAAGTTTTAAAAAATCTTGAACCGCATAAAGTTTCAA
259 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACCGCATAAAGTTTCAA
21533622 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
323 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
21533687 TTGTAT-AATTTTCAAGCCATAAAAATGACATTGGCACGCAGAAATATAAAGATGTGCCTAAACC
388 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
21533751 CACCGACCACCCTATCGATCCACAGCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGT----GCCC
453 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * ** *
21533812 G-CA--CGCTCGTTTCATGGGTTAACTTAGGCATATGGAGTTCATTCCCAGTCTA
518 GCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
21533864 AGCATACGGA
Statistics
Matches: 3559, Mismatches: 442, Indels: 265
0.83 0.10 0.06
Matches are distributed among these distances:
867 5 0.00
868 296 0.08
869 89 0.03
871 1 0.00
872 3 0.00
873 260 0.07
874 6 0.00
875 3 0.00
876 47 0.01
878 6 0.00
879 238 0.07
880 10 0.00
881 1 0.00
882 20 0.01
883 13 0.00
884 146 0.04
885 108 0.03
886 424 0.12
887 104 0.03
888 56 0.02
889 30 0.01
890 48 0.01
891 37 0.01
892 55 0.02
893 68 0.02
894 24 0.01
895 7 0.00
896 17 0.00
897 16 0.00
898 9 0.00
899 133 0.04
900 572 0.16
901 87 0.02
902 46 0.01
903 50 0.01
904 32 0.01
905 48 0.01
906 31 0.01
907 115 0.03
908 44 0.01
909 2 0.00
910 1 0.00
911 8 0.00
913 1 0.00
914 2 0.00
915 235 0.07
916 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (880 bp):
GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATACCAAAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGAACCGCATAAAGTTTCAAAAA
TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG
TATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCAC
CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
ACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATTGGCCAGAC
CAAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCA
TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGC
GACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGGGGCACCATCGCCGGAGCATCGTCGGAG
AACCTGAACGGCGGCATTGGGGTTCCGACGATCGG
Found at i:21532244 original size:26 final size:26
Alignment explanation
Indices: 21532207--21532259 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21532197 GTTGACTTAG
* * *
21532207 GCATACGGAGTTCATTTCCAGTGTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
21532233 GCATACGCAGTTCATTCCCAGTCTAA
1 GCATACGCAGTTCATTCCCAGTCTAA
21532259 G
1 G
21532260 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGCAGTTCATTCCCAGTCTAA
Found at i:21533152 original size:26 final size:26
Alignment explanation
Indices: 21533122--21533174 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21533112 GTTGACTTAG
21533122 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
21533148 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21533174 G
1 G
21533175 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21533869 original size:26 final size:26
Alignment explanation
Indices: 21533839--21533891 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21533829 GTTAACTTAG
*
21533839 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21533865 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21533891 G
1 G
21533892 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21534770 original size:26 final size:26
Alignment explanation
Indices: 21534734--21534786 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21534724 GTTGACTTAG
21534734 GCATACGGAGTTCATTCCCACTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
*
21534760 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCACTCTAA
21534786 G
1 G
21534787 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCACTCTAA
Found at i:21536552 original size:26 final size:26
Alignment explanation
Indices: 21536516--21536568 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21536506 GTAGACTTAG
21536516 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21536542 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21536568 G
1 G
21536569 ATCGAACCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21539218 original size:26 final size:26
Alignment explanation
Indices: 21539189--21539241 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21539179 GTTGAGTTAG
21539189 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21539215 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21539241 G
1 G
21539242 ATCGCACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21540120 original size:26 final size:26
Alignment explanation
Indices: 21540091--21540143 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21540081 GTTGACTTAG
*
21540091 GCATACAGATTTCATCCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
* *
21540117 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATCCCCAGTCTAA
21540143 G
1 G
21540144 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAGTCTAA
Found at i:21540236 original size:902 final size:902
Alignment explanation
Indices: 21538322--21546323 Score: 9896
Period size: 902 Copynumber: 9.0 Consensus size: 902
21538312 GTTGACTTAG
* * *
21538322 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGA-TCGAGGGTTGCAGCCA-CACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACT-AAGGGTTGCAG-CAGCACATGCTG
* * * * *
21538385 GGCTCGGGCAGGTGCTGGTGCCGTATTTTTCTTCG-CTGAGGCTCCATCGTCGGAGCATCGTCGG
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGG
* *
21538449 AGAACCTGACCGGCGGCATTGAGGTTCC-AGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATGA
128 AGAACCTGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGA
*
21538513 TGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
21538578 TCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
21538643 GAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
* * *
21538708 TTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTACTTTCC
385 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCC
* * * * *
21538773 G-AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAATGAGT
449 GAAAAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
21538837 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
21538902 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGG
579 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
21538967 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAAT------------GCCCGCCCGCTCGTTTCGTCA
644 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCA
* * * * * ** * * *
21539020 GTTAGCTTAGGTATACGGAGTTAATTCCCAGTATAAGATTGGACCAAACTGAGGGTTGTAGTAGC
709 -TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGC
* * **
21539085 AGGATCGGCAGCACGCAGAGGGGGACCAGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
773 AGGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
21539150 GGCTGAGCGCCCGCATGCTCATTTCGTGGGTTGAGTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
21539215 GCATACGGAGTTCGTTCCCAGTCTAAGATCGCACTGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTAAGGGTTGCAGCAGCACATGCTGGG
* * * * **
21539280 CTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGGCGCCATCGCCGGAGCATCGCTAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
21539345 ACCTGACCGACGGCATTGGGGGTCCGACGATCGGGGGAGCC-AGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTG
* *
21539409 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCTTATCCCTAATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
21539473 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
21539538 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
21539603 TGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGTTCAAAACTCCTTCCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* ** * * *
21539668 ATTTTAAAAAATCTTGAACCGCAAAAAGTTTCGAAAATCCTGAAAAATAGAAAATGAGTCGTCTT
455 ATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
21539733 GCCTTGAAACTTAACGTGAAGGCTTAAGGGACCATGGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * * *
21539798 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACAACCCTATCTATGCACGACGTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *** ** *
21539863 CATCCCCTCTCTCTGGCCGACGAAGTGTTTGCCCGCTTGCCCGCCCGCTCGTTTCATCGATTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC-ATTGGC
* * *
21539928 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGGGTTGTGGCAGCAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATC
* * * *
21539993 GGCAGCACGTAGAGGGGGACCCGGCCGATCCCCCGCTTGCGCATCCTGCCCCTCTGGCCGGCTGA
779 GGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
21540058 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGATTTCATCCCCAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
21540117 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTAAGGGTTGCCGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTAAGGGTTGCAGCAGCACATGCTGGG
* * * *
21540182 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGTCAGGGCACCAACGTCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * *
21540247 ACCTGACCGACGGCATTGGGGTTCTGGCAATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCG-GGGGGGTGTGCGCACATGATGT
21540312 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
21540377 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
21540442 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
21540506 GTGCATGCCAACAAAAATA-AATGGATCACTTCTACCAAGTTTGGGACCAAAACTCCTTTC-AAA
389 GTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
21540569 AAACTTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
453 AAA-TTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
21540634 CTTGCCATTAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
21540699 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *** *
21540764 GCACATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGTTTGCCCGCTCGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC-ATT
* * * *
21540829 GGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTGTGGTAGCAGG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGG
* * *
21540893 ATCGGTAGCA--TCAGAGGGGGACCC-AGCTGATCCCCGGCTTGCGCATCCTGCCCCTCTGGACG
776 ATCGGCAGCACGT-AGAGGGGGACCCGA-CTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
*
21540955 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAA
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
21541019 GCATACGAAGTTTATTCCCAGTCTAAGATCGGACCAGACTGAGGGTT--ATGACAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTAAGGGTTGCA-G-CAGCACATGCTG
* * * * * * * *
21541082 GGTTTGGGCATGTGCTGGTGCCGCAATTTTCTTCGCCGAGGCACCATGGCCGGAGCATCACCGGA
64 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGA
* * *
21541147 CAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGTCGGGGAGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATG
* * * *
21541212 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTGTCCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
21541277 ACGCCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
21541342 ATGCGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * * *
21541407 TGTGCATGCCAATAAAAGTAGAACGATCATGTCTACCAAGTTTGGGGCCAAAAATACTTCGGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* *
21541472 AAATTTTAAAAAATCCCAAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
21541537 TTGCCATGAAACTTCATGTGAAGGCTTAAGGAACCATTGTATGAATTTACAAGCCATAAAATTGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
21541602 TATTGGCACACAGAAATATGAGGATGTGCCTAAACTCACCTACCACCCTATCGATTCACAGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
21541667 CGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCGCCCGCCCGCTAGTTTCGTCGGTTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC-ATTG
* * *
21541732 GCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCCGATCGAGGG-T-T---------A
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGA
* * ** * * * * * *
21541786 -CGGCAGCATGCAGAGGGGGACATGGCCGATCCCTGGCTTGCGCATCCCGCACCTCTTGCCGGTT
777 TCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
21541850 GAGCGCCGGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
842 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
21541911 GCATACGGAGTTCATTGCCAGTCTAAGATCAGA-TCGGACCGAGGGTTGCAACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACT-GGACTAAGGGTTGCAGCAGCACATGCTGG
** * *
21541975 GCTCGGGCATGTGCTGGTGCTACATTTTTCTTCATCGGGGCACCATCGTCGGAAGCATCACCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG-AGCATCGCCGGA
* * * *
21542040 GAACCTGATCGACGGCATCGAGGTTCC-AGTGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
129 GAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
21542104 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCGAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
21542169 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
21542234 ATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTACCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** *
21542299 TGTGCATGCCAATAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCTGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** * *
21542364 AACCTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
21542429 TTGCCATGAAACTTCAAGTGTAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
21542494 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACAGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
21542559 CGCATCCCGTCTCTCTGGCCGACGTAGTTCCCGTCCGCCCGCCCATCCGCTTGTTTCGTCAGTTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCA-TTG
* ** * * *
21542624 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGGCAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGA
* * * * * *
21542689 TCAGCAGCACGTAAAGGGGGACCCGACTGATCACCGGCTTGCACATCCCACCCCTCTGGCCAGCT
777 TCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
21542754 GGGCGTCCACACGCTAC-TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GAGCGCCCGCACGCT-CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
21542815 G-AT-C--AG---A---CC-G-----GA---GACT-G----AGGGTTGCAGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTAAGGGTTGCAGCAGCACATGCTGGG
* * **
21542856 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTTGTTAGGGCACCA---T-----CA---CCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
21542910 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGCGGTGTGCGCACAT-ATGT
131 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGG-GGTGTGCGCACATGATGT
* * *
21542974 GCGATGGGTGCTGGTACTTGGCCCTTATA-TGGCCCCCTATCCCTCTTCAAATCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
21543038 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
21543103 TGGGGACACTTTTTTGAAATGGTCACAAATTCTTGTACACTTCAAGTTTTTACCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
**
21543168 GTGCATGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
21543233 ACTTTTAAAAAATCTCGAACCTCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTTGTCT
454 AATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
21543298 TGCCATGAAACTTCACGTGTAGGCTTAAGGGACCATTGTATGAATTTTACAAGCCATAAAAATGG
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGG
** *
21543363 CATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTG
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
21543428 CGCATCCCGTCTCTCTGGCCGACGTAGTTCCCGTCCGCCCGCCCATCCGCTTGTTTCGTCAGTTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCA-TTG
* * ** * * * *
21543493 GCTTAGGTATACGAAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGACAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGA
* * * * * *
21543558 TCAGCAGCACGTAAAGGGGGACCCGACTGATCACCGGCTTGCACATCCCACCCCTCTGGCCAGCT
777 TCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
21543623 GGGCGTCCACGCGCTAC-TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T--
842 GAGCGCCCGCACGCT-CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
21543680 -C-TA---AG---------A-TC--AGA-C---C-GGACTAAGGGTTACGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTAAGGGTTGCAGCAGCACATGCTGGG
* **
21543723 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTTAGGGCACCA---T-----CA---CCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
*
21543777 ACCTTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGCGGTGTGCGCACAT-ATG
131 ACC-TGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGG-GGTGTGCGCACATGATG
* * *
21543841 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAATCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
21543906 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
21543971 ATGGGGACACTTTTTTGAAATGGTCACAAATTCTTGTACACTTCGAGTTTTTACCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** *
21544036 TGTGCATGCCAACAAAAATACAAGGATCACGTCTAAAAAGTTTAGGGCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
21544101 AACTTTTAAAAAATCTCGAACCTCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTTGTC
453 AAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
21544166 TTGCCATGAAACTTCACGTGTAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
21544231 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTA
583 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
21544296 CGCATCCCGTCTCTCTGGCCGACGTAGTTCTCGCCCGCCCGCCCATCCGCTCATTTCGTCAATTG
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTC-ATTG
* * * *
21544361 GCTTAGGCATACGGAGTTCATTCCCAGTATAAGATCGGACTGGACCAAGGGTTGCGGCAGCAGGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGA
** * * * * *
21544426 TCGATAGCACGTAAAGGGGGACCCGACTGATCACTGGCTTGCACATCCCGCCCCTCTGGCCAGCT
777 TCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
21544491 GGGCGTCCACACGCTAC-TTTCATGGGTTGACTTAGGCATACGGAGTTCATT-CC---C-AA
842 GAGCGCCCGCACGCT-CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
21544547 TC-TA--G-G---A-T--C-G----A-ATCGGACT-G---AAGGTTATG--GCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTAAGGGT-TGCAGCAGCACATGCTGG
* * * **
21544590 GGTCGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
21544655 AACCTGACCGGCGGCATTGGTGTTCCGACGATCGGGGGGCCTGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* * *
21544720 CGATGGTTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
21544785 ACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
260 A-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AA
*
21544850 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAG-TTTTAGCTGATTTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTT
* * * * * *
21544913 TTGTGCAAGCCAACAAAAATACAAGGATAACGTCTCCCAAGTTTGGGGCTAAAACTTCTTTCGAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
21544978 AAAATTTT-ACAAA--TCG-----T-----G----AAAAAT-A-G------AG--AACGAGTCGT
452 AAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * * *
21545016 CTTGCCGTAAAACTTCATGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAACG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
21545081 G-ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCATGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * * *
21545145 GCGCATCTCATCTCTTTGGCTGACGTCA-TGCCCACCCGCCCACCCGCTCGTTCGTTTCATCAGT
647 GCGCATCCCGTCTCTCTGGCCGACGT-AGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCA-T
* * *
21545209 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAACAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAG
** ** * * * * * *
21545274 GATCGAAAGCACACAAAGAGGGACCCGA-TCGATCCTCGGCTTGTGTATCCCGCCCCTCTGGCAG
775 GATCGGCAGCACGTAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
21545338 GCTCAGCGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTGTAGG
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA--GT---
21545403 CATATAGA
899 C---TA-A
* *** *
21545411 GTTCATTCCCAATCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAAAC-AGAGGATT
1 G--------C-A--T-A-C----GGAGTTCATTCCCAGTCTAAGATCGGACTGGACTA-AGGGTT
* * * *
21545475 GCGGCAGCACATGCTGGGCTTGGGCTTGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCG
48 GCAGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* ** * * * * ** *
21545540 CCGGAGCATTACCAGAGAATCTGACTGAAGGCATTAAGGTTCCGACGATCGGGGGGGCC-AGGGG
113 TCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGG
* *
21545604 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCTTATCCCTCAT
177 GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAT
* * *
21545669 CAAACGTCGAGAACTCACACCCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTACCAGTAGC
242 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
21545734 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
307 CATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTT
*
21545799 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAATGATCACGT-TCACCAAGTTTGGGGC
372 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGC
* ** * * * ** *
21545863 TAAAA-TCCTTTTGGAAAAATTTTAAAAAATCTTGAAACTTAAAAAGTTTTGAAAATCGTGAAAA
436 CAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAA
* *
21545927 ATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTATGAATTT
501 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* ** *
21545992 ACAAG-CATTAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAGGCACCTACCACT
566 ACAAGCCA-TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
* * * * *
21546056 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCAACGTAGTGCCCGCCCACCCGGCCTCC
630 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCC
* * * **
21546121 CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCAATCCCAGTCTAAGATCGGACCGGATGG
695 CGCTCGTTTCGTC-ATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCG
* ** ** * *** * **
21546186 AGGGTT-TCGGTAGCAGGATCGATAGCACACAGAGGGGGACCCGA-TCGGTCTATGACTTATGCA
759 AGGGTTGT-GGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCA
* ** * *
21546249 TCTCATCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAG
822 TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG
21546314 TTCATTCCCA
887 TTCATTCCCA
21546324 AATCGTAAAA
Statistics
Matches: 6335, Mismatches: 575, Indels: 363
0.87 0.08 0.05
Matches are distributed among these distances:
849 3 0.00
850 258 0.04
851 72 0.01
853 2 0.00
859 2 0.00
861 6 0.00
863 3 0.00
864 6 0.00
865 1 0.00
867 80 0.01
868 809 0.13
869 724 0.11
870 14 0.00
871 2 0.00
872 3 0.00
875 3 0.00
876 16 0.00
877 94 0.01
878 159 0.03
879 53 0.01
880 59 0.01
884 2 0.00
885 3 0.00
886 1 0.00
888 3 0.00
889 7 0.00
890 258 0.04
891 158 0.02
892 801 0.13
893 182 0.03
894 5 0.00
896 1 0.00
897 7 0.00
900 66 0.01
901 325 0.05
902 1074 0.17
903 124 0.02
904 453 0.07
905 152 0.02
908 1 0.00
913 1 0.00
917 5 0.00
919 1 0.00
925 2 0.00
926 2 0.00
927 68 0.01
928 264 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACTAAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCATTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCAGGATCGG
CAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:21541922 original size:26 final size:26
Alignment explanation
Indices: 21541885--21541937 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21541875 GTTGACTTAG
21541885 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
21541911 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21541937 G
1 G
21541938 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21543918 original size:869 final size:868
Alignment explanation
Indices: 21533865--21545397 Score: 12888
Period size: 892 Copynumber: 13.0 Consensus size: 868
21533855 CCCAGTCTAA
*
21533865 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGA-TCGAGGGTTACGGCAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTACCGGACT-GAGGGTTGCGGCAGCACATGCTG
21533928 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCCCCGGA
65 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T-----CAT--CCGGA
* * *
21533993 GAACCTGACCAACGGCATTGGGGTTCCGACGATCGGGGGTGCC-GGGGGGTGCGCGCACATGATG
120 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
* *
21534057 TGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
185 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
21534122 ACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
250 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
21534187 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTTTTT
315 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
21534252 TGTGCATGCCAACAAAAATACAAGGATCACATCTA-CAAGTTTGGGGCTAAAACTCCTTCTGAAA
380 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * * *
21534316 AAATTTTAAAAAATC-CCAAACTGCAAAAAAGTTTTGAAAATCGTGAAAAATAGACAACGAGTCA
445 AAATTTTAAAAAATCTCGAACCT-C-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* *
21534380 TCTTGCCATGAAACTTCACGTGAAGGTTTAATGGACCATTGTATGAATTTACAAGCCATAAAAAT
508 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
21534445 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCAACCTATCGATCCACGGCT
573 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * **
21534510 TGCGCATCCTGTCTCTCTGGCCGGCGTAGT----GCCCTCTCG-CCT--GCTCGTTTCGTTGGTT
638 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCTCCGCTCGTTTCGTCAGTT
* * * * *
21534568 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCAAGGGTTGGGGTAGCAAG
703 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGG
** * * * * *
21534633 ATCGGCAGCACACAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGT
768 ATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
21534698 TGAACGCCCGCACGCT-CGTTTCGTGGGTTGACTTAG
833 TGAGCGCCCACACGCTAC-TTTCATGGGTTGACTTAG
*
21534734 GCATACGGAGTTCATTCCCACTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGAT
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG-T-A----C---C---G----GA-C----
* *
21534799 TGAGGGTTTCGGCAGTACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
41 TGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
21534864 CACCATCGTCGGAGCATCTCCGGAGAACCTGATCGGCGGCATTGGGGTT-CGGCGATCGGGGGGG
106 CACCA---T-----CA--TCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * *
21534928 CCGAGGGGGGTGTGCACACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCACCT
161 CCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
21534993 ATCCCTCACCAAACCTCGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
225 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
21535058 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACA
290 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
21535123 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACTAAAATACAAGGATCACGTCTACCAAG
355 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
21535188 TTTGGGGCCAAAAATCCTTCTG-AAAAATTTTAAAAAATCCCGAACCGCATAAAGTTTCAAAAAT
420 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCAAAAAT
* *
21535252 CGTGAAAAATAGAAAACGAGTCGTCTTTCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
485 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
21535317 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCCAAACCCACC
550 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
21535382 TACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCT
615 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC
* * * * * *
21535447 G-CCT--ACTCGTTTCGTC-GGTGGAATTAGGCATACGGAGTTTATTCCCAGTCTTAGATCAGAT
680 GCCCTCCGCTCGTTTCGTCAGTTGG-CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * * * * *
21535508 CAGACTGAGAGTTGTGGCAGCAGGATCGACAGCACATAGAAGGGGACCTGGCCGATCCCCTGCTT
744 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTT
* * * * *
21535573 GTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGC-CGCT-CGTTTCGTGGGTTGACATAG
809 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTAC-TTTCATGGGTTGACTTAG
* *
21535632 GCATATGGAGTTCATTCCTAGTCTAAGGATATGGAGTTCATTCCCAGTCAAATATCCGATCGGAC
1 GCATACGGAGTTCATTCCCAGTC------TA---AG---A-T--CAG-----TA--C---CGGAC
* * * * **
21535697 CGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCAGTTTTCTTCACCGGGG
41 TGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
21535762 CACCATCGT-CGGAGAACTTGACCGACGACGTTGGGGTTCCGACGATCGAGGGGGCCGGGGGGGT
106 CACCATCATCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
* * * **
21535826 GTGCACACTTGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTTGTCA
171 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCA
* *
21535891 AACCTCGAGAACTCAGACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCA
236 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
** * * *
21535956 TTAAAGTGTCTGAAATGGAAACACTTTTTTCAAATGGTCACAAAATCTTGTATACTTTGAGGTTT
301 TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
21536021 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGGATTACGTCTACCAAGTTTGGGGTCA
366 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCA
** * **
21536086 AAACTCCTTTGGAAAAAATTTAAAAAAATC-CTGAACC-CTAAAAAGTTTTGAAAATCATGAAAA
430 AAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCTC-AAAAAGTTTCAAAAATCATGAAAA
*
21536149 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAGGGCTTAA-GGACCATTGTATGAATTT
493 ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
21536213 ACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCC-CCTACCACCC
558 ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * * * * *
21536277 TATCGATCCACGGCTTACGCATCCCATCTCTCTGGCTGGCGTAGTGCCCACCCACCCG--CT---
623 TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCTCCG
* * ** *
21536337 -T-GTTTCGTCGGTTGGCTTAGGCATACGGAATTCATTCCCAGTCTAAGATCAGACTGGACTGAG
688 CTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * *
21536400 GGTTGTGGCAGTAGGATCGGCAGCACGTAGAGAGGGACTCGGCCGATCCCCAGCTTGCGCATCCC
753 GGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCC
* * * * * * *
21536465 ACCCCTCTGGTCGGTTGAGCGCCCGCACGCT-CGTTTCGTTGGTAGACTTAG
818 GCCCCTCTGGCCGGCTGAGCGCCCACACGCTAC-TTTCATGGGTTGACTTAG
*
21536516 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG-T-A----C---C---G---G-ACTG---
* * *
21536581 CTAGGGTTACGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
43 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
21536646 CACCATCGTCAGAGCATCGTCAGAGAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGTG
106 CACCA---T-----CATC--CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* *
21536711 CC-GGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTA
161 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
**
21536775 TCCCTCATCAAAGTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
226 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
21536840 CCAGTAGCCACTAAAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACAC
291 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
21536905 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
356 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* *
21536970 TTGGGG-CAAAACTCCTTCC-AAAAAGAGTTTAAAAAATC-CTGAA-CTGCAAAAAGTTTCCAAA
421 TTGGGGCCAAAACTCCTTCCGAAAAA-ATTTTAAAAAATCTC-GAACCT-CAAAAAGTTTCAAAA
21537031 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
483 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* *
21537096 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCCAAACCCA
548 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * *
21537161 CCTACCAACCTATCGATCCACGGCTTGCGCATCCCGTCTCCCTGGCCGGCGTAGTGCCCG-CCG-
613 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * * * *
21537224 CCGCCGC-CCACTCGTTTCGTCAGTGGGCTTAGGAATACGAAGTTCATTCCCAGTCTAAGATCCG
678 CCGCC-CTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * ** *
21537288 ACCAGACTGAGGGTTGCGGCACCATCG-CCGG-AGCATCGT--CGGGTCACCATCGTC-GAAACA
742 ACCAGACCGAGGGTTGCGGCAGCA-GGATCGGCAGCA-CGTAGAGGGGGACC--CGACTG----A
** * **** ** * * * *
21537348 TCACGTGAAGGCTTAAG-GGA-CCCTTGTATGAAT-TTACAAGCCATAAAAATG-GCATTGGCAC
799 TC-C---CCGGCTT--GCGCATCCC--G--CCCCTCTGGC-CGGC-T---GA-GCGC----CCAC
*** * * * * * * ** *
21537409 ACAAAAATATGA-AGATGTGCCCAAAC
844 ACGCTACTTTCATGGGT-TG-ACTTAG
* ** * * *
21537435 CCACCTACCAACCTATCGATCCACGGCTTGCGCATCCTGTCCAAGATCA-TACCGGAGC-GAGGG
1 GCA--T----ACGGA--G-TTCA----TT---C--CCAGTCTAAGATCAGTACCGGA-CTGAGGG
*
21537498 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
47 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT
* * *
21537563 CACCGGAGCATCGCTGGAGAACCTGACCGACGGCATTGGGGTT-CTAGCGATCGAGGGGGCC-GA
112 --------CATC-C-GGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGG
* *
21537626 GGGGTGAGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
166 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
21537691 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
231 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
21537756 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
296 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
21537821 GTTTTTACCTGAATTTTTTT-TGAATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
361 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * *
21537885 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAGCCGT-AAAAAGTTT-TAAAAGCATGA
426 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC-TCAAAAAGTTTCAAAAATCATGA
21537948 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
490 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
* * *
21538013 TTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGACGTGCCTAAAGCCACCTACCA
555 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* * *
21538078 CCCTATCGATCCACGGCTTGCGCATCACGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCG--C-
620 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCT
* * * *
21538140 CCGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAATATCAGACCAGACT
685 CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACC
* * * *
21538205 GAGGGTTGCGACAGTAGGATCGGCAGCACGCAGA-GGGGA-CCGA-TCGATCCCCGAG-TTACGC
750 GAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACT-GATCCCCG-GCTTGCGC
* * * ***
21538266 ATCCCGCCCCTCTGGTCGGCTGAGCACCCGCACGCT-CGTTTTGCGGGTTGACTTAG
813 ATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTAC-TTTCATGGGTTGACTTAG
* *
21538322 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCGGA-TCGAGGGTTGCAGCCA-CACATGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTACCGGACT-GAGGGTTGC-GGCAGCACATGCT
* * * *
21538384 GGGCTCGGGCAGGTGCTGGTGCCGTATTTTTCTTCG-CTGAGGCTCCATCGTCGGAGCATCGTCG
64 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-G-GG--GCA-C--C--ATCATC--CG
* * *
21538448 GAGAACCTGACCGGCGGCATTGAGGTTCC-AGCGATCAGGGGGGCCGGGGGGGTGTGCGCACATG
118 GAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATG
*
21538512 ATGTGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
182 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
21538577 CTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
247 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
*
21538642 GGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
312 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TT
* * *
21538707 TTTTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCAAAACTACTTTC
376 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTC
* * * *
21538772 CG-AAAAATTTTAAAAAATCCCAAACCGT-AAAAAGTTTCAAAAATTATGAAAAATAGAAAATGA
440 CGAAAAAATTTTAAAAAATCTCGAACC-TCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGA
21538835 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
504 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
21538900 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAA
569 AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
21538965 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAAT--------GCCCG--C-CCGCTCGTTTCGTC
634 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCTCCGCTCGTTTCGTC
* * * * ** * * ** *
21539019 AGTTAGCTTAGGTATACGGAGTTAATTCCCAGTATAAGATTGGACCAAACTGAGGGTTGTAGTAG
699 AGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
* * **
21539084 CAGGATCGGCAGCACGCAGAGGGGGACCAGGTTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
764 CAGGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
21539149 CGGCTGAGCGCCCGCATGCT-CATTTCGTGGGTTGAGTTAG
829 CGGCTGAGCGCCCACACGCTAC-TTTCATGGGTTGACTTAG
21539189 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTCCCAGTCTAAGATCGCACTGGAC
1 GCATACGGAGTTCATTCCCAGTCT----A-A--GA------T--CAG--T---A---C-C-GGAC
* * *
21539254 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCACATTTTTCTTCGTCGGGG
41 TGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG
* * * *
21539319 CGCCATCGCCGGAGCATCGCTAGAGAACCTGACCGACGGCATTGGGGGTCCGACGATCGGGGGAG
105 -G-CA---CC--ATCATC-C-GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* *
21539384 CC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCTTA
161 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
*
21539447 TCCCTAATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
226 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
21539512 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
291 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
21539577 TTCGAGTTTTTAGCTGAATTTTTTTATGCATGGCAACAAAAATACAAGGATCACGTCTACCAAGT
356 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
** * * *
21539642 TTGGGTTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCGAAAATC
421 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCAAAAATC
* * * * *
21539707 CTGAAAAATAGAAAATGAGTCGTCTTGCCTTGAAACTTAACGTGAAGGCTTAAGGGACCATGGTA
486 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* *
21539772 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCA
551 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * * * * *** **
21539837 ACAACCCTATCTATGCACGACGTGCGCATCCCCTCTCTCTGGCCGACGAAGTGTTTGCCCGCTTG
616 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * **
21539902 CCCGCCCGCTCGTTTCATC-GATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGAC
681 CCC-TCCGCTCGTTTCGTCAG-TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * *
21539966 CGGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCCGCTT
744 CAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTT
* * *
21540031 GCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT-CGTTTCGTGGGTTGACTTAG
809 GCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTAC-TTTCATGGGTTGACTTAG
* * *
21540091 GCATACAGATTTCATCCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG-----T---A--C------CGGACT-G--
* * * * *
21540156 TAAGGGTTGCCGCAGCACATACTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTTGTCAGGG
43 --AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * *
21540221 CACCAACGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCAATCGGGGGGG
106 CACC-A--T-----CAT--CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
21540286 CCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
161 CCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
21540351 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
225 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
*
21540416 GCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
290 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
*
21540481 CTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATA-AATGGATCACTTCTACCAA
355 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAA
* * *
21540544 GTTTGGGACCAAAACTCCTTTC-AAAAAACTTTTAAAAAATCCCGAACCGT-AAAAAGTTTCAAA
419 GTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCTCGAACC-TCAAAAAGTTTCAAA
* *
21540607 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCATGTGAAGGCTTAAGGGACCAT
482 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
21540672 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
547 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCC
* *
21540737 ACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCG
612 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG
** *
21540802 CCCG-TTTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAGTTCATTCCCAGTCTAAGATC
677 CCCGCCCT--CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
21540865 AGATCGGATCGAGGGTTGTGGTAGCAGGATCGGTAGCA--TCAGAGGGGGACCC-AGCTGATCCC
740 AGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGT-AGAGGGGGACCCGA-CTGATCCC
* * * *
21540927 CGGCTTGCGCATCCTGCCCCTCTGGACGGCTGAGCGCCCGCACGCT-CGTTTCGTGGGTTGACTT
803 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTAC-TTTCATGGGTTGACTT
21540991 AG
867 AG
*
21540993 GCATACGGGGTTCATTCCCAGTCTAAGCATACGAAGTTTATTCCCAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG-----T---A--C------C-G----GAC
** * * * * * *
21541058 TGAGGGTTATGACAGCACATGCTGGGTTTGGGCATGTGCTGGTGCCGCAATTTTCTTCGCCGAGG
41 TGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* *
21541123 CACCATGGCCGGAGCATCACCGGACAACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGG
106 CACCAT--------CAT--CCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
* * * * *
21541188 TCGGGGAGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTG
161 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
21541253 TCCCTCATCAAACCTCAAGAACTCACGCCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
226 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
21541318 CCAGTAGCCATTAAAGTGTCTTAAATGCGGACAGTTTTTTCAAATGGTCACAAAATCTTGTACAC
291 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * * *
21541383 TTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAGTAGAACGATCATGTCTACCAAGT
356 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * *
21541448 TTGGGGCCAAAAATACTTCGGAAAAAATTTTAAAAAATCCCAAACCTTAAAAAGTTTCAAAAATC
421 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCAAAAATC
* *
21541513 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGAACCATTGTA
486 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * * *
21541578 TGAATTTACAAGCCATAAAATTGGTATTGGCACACAGAAATATGAGGATGTGCCTAAACTCACCT
551 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
21541643 ACCACCCTATCGATTCACAGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGCCCG
616 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
* * * * *
21541708 CCCGCCCGCTAGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC
681 CCC-TCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* * * ** * * *
21541773 CGATCGAGGGTTACGGCAGC---AT-----G--C--AGAGGGGGACATGGCCGATCCCTGGCTTG
745 AGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGCTTG
* * * ** *
21541826 CGCATCCCGCACCTCTTGCCGGTTGAGCGCCGGCACGCT-CGTTTCGTGGGTTGACTTAG
810 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTAC-TTTCATGGGTTGACTTAG
*
21541885 GCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAGATCAGATCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG-T-A---CC-G-----GA-C---T-----
** ** *
21541950 CGAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTACATTTTTCTTCATCGGGG
42 -GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * *
21542015 CACCATCGTCGGAAGCATCACCGGAGAACCTGATCGACGGCATCGAGGTTCC-AGTGATC-GGGG
106 CACCA---T------CAT--CCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATCGGGGG
*
21542078 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCT
159 GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* *
21542143 TATCCCTCATCGAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTAC
224 TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
*
21542208 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATCTTGTAC
289 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * * **
21542273 ACTTCAAGTTTTTACCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCACGTCTAAAAA
354 ACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* **
21542338 GTTTGGGGCCAAAACTCCTTCTGAAAAACCTTTAAAAAATCTCGAACCAT-AAAAAGTTTCAAAA
419 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACC-TCAAAAAGTTTCAAAA
* * *
21542402 ATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAAGTGTAGGCTTAAGGGACCATT
483 ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
**
21542467 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCA
548 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCA
* * * *
21542532 CCTACCACACTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTTCCCGTCCGC
613 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGC
* * *
21542597 CCGCCCATCCGCTTGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAA
678 CCGCCC-TCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
** * * * *
21542662 ACTGGACCAAGGGTTGCGGCAGCAGGATCAGCAGCACGTAAAGGGGGACCCGACTGATCACCGGC
742 ACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGC
* * * * *
21542727 TTGCACATCCCACCCCTCTGGCCAGCTGGGCGTCCACACGCTACTTTCATGGGTTGACTTAG
807 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTACTTTCATGGGTTGACTTAG
* *
21542789 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGAGACTGAGGGTTGCAGCAGCACATGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTACC-G-GACTGAGGGTTGCGGCAGCACATGCT
* * **
21542853 GGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTTGTTAGGGCACCATCA-CCGGAGAACCTGAC
64 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCCGGAGAACCTGAC
*
21542917 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGCGGTGTGCGCACAT-ATGTGCGATGG
129 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGG
* * *
21542981 GTGCTGGTACTTGGCCCTTATA-TGGCCCCCTATCCCTCTTCAAATCTTGAGAACTCACACCCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
21543045 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * * *
21543110 ACTTTTTTGAAATGGTCACAAATTCTTGTACACTTCAAGTTTTTACCTGAATTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
** *
21543175 CCAACAAAAATACAAGGATCACGTCTAAAAAGTTTGGGGCCAAAACTCCTTCCGAAAAACTTTTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* *
21543240 AAAAATCTCGAACCTCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTTGTCTTGCCATG
453 AAAAATCTCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
21543305 AAACTTCACGTGTAGGCTTAAGGGACCATTGTATGAATTTTACAAGCCATAAAAATGGCATTGGC
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCATAAAAATGGCATTGGC
** *
21543370 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCC
582 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * *
21543435 CGTCTCTCTGGCCGACGTAGTTCCCGTCCGCCCGCCCATCCGCTTGTTTCGTCAGTTGGCTTAGG
647 CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC-TCCGCTCGTTTCGTCAGTTGGCTTAGG
* * * ** * * *
21543500 TATACGAAGTTCATTCCCAGTCTAAGATCAAACTGGACCAAGGGTTGCGACAGCAGGATCAGCAG
711 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * * * * *
21543565 CACGTAAAGGGGGACCCGACTGATCACCGGCTTGCACATCCCACCCCTCTGGCCAGCTGGGCGTC
776 CACGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
*
21543630 CACGCGCTACTTTCATGGGTTGACTTAG
841 CACACGCTACTTTCATGGGTTGACTTAG
* * * *
21543658 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACTAAGGGTTACGGTAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTACCGGACTGAGGGTTGCGGCAGCACATGCTGG
* **
21543722 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTTAGGGCACCATCA-CCGGAGAACCTTGACC
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCCGGAGAACC-TGACC
*
21543786 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGCGGTGTGCGCACAT-ATGTGCGATGGG
130 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGG
* * *
21543850 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAATCTTGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
21543915 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
21543980 CTTTTTTGAAATGGTCACAAATTCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
** * *
21544045 CAACAAAAATACAAGGATCACGTCTAAAAAGTTTAGGGCCAAAACTCCTTCCGAAAAACTTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
21544110 AAAATCTCGAACCTCAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTTGTCTTGCCATGA
454 AAAATCTCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
21544175 AACTTCACGTGTAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * *
21544240 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTACGCATCCCG
584 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * *
21544305 TCTCTCTGGCCGACGTAGTTCTCGCCCGCCCGCCCATCCGCTCATTTCGTCAATTGGCTTAGGCA
649 TCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCC-TCCGCTCGTTTCGTCAGTTGGCTTAGGCA
* * ** * **
21544370 TACGGAGTTCATTCCCAGTATAAGATCGGACTGGACCAAGGGTTGCGGCAGCAGGATCGATAGCA
713 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * * * * * *
21544435 CGTAAAGGGGGACCCGACTGATCACTGGCTTGCACATCCCGCCCCTCTGGCCAGCTGGGCGTCCA
778 CGTAGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCA
21544500 CACGCTACTTTCATGGGTTGACTTAG
843 CACGCTACTTTCATGGGTTGACTTAG
* * * * * ** *
21544526 GCATACGGAGTTCATTCCCAATCTAGGATC-GAATCGGACTGAAGGTTATGGCAGCACATACTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGTACCGGACTGAGGGTTGCGGCAGCACATGCTGG
* * *
21544590 GGTCGGGCATGTGCTAGTGCCACATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGGAG
66 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--------CAT--CCGGAG
* * *
21544655 AACCTGACCGGCGGCATTGGTGTTCCGACGATC-GGGGGGCCTGGGGGGTGTGCGCACATGATGT
121 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
21544719 GCGATGGTTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
186 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
21544784 CACCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
251 CA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-A
*
21544849 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-GAG-TTTTAGCTGATTTTTT
314 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTT
* * * * * *
21544912 TTTGTGCAAGCCAACAAAAATACAAGGATAACGTCTCCCAAGTTTGGGGCTAAAACTTCTTTCGA
378 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
*
21544977 AAAAATTTT-ACAAA--TCG----T------G----AAAAAT-A-G------AG--AACGAGTCG
443 AAAAATTTTAAAAAATCTCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * * * *
21545015 TCTTGCCGTAAAACTTCATGTAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAC
508 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
21545080 GG-ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACTCTATCGATCCATGGCT
573 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * * *
21545144 TGCGCATCTCATCTCTTTGGCTGACGTCA-TGCCCACCCGCCCACCCGCTCGTTCGTTTCATCAG
638 TGCGCATCCCGTCTCTCTGGCCGACGT-AGTGCCCGCCCGCCCGCCCTC-CGCTCGTTTCGTCAG
* *
21545208 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAACA
701 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
** ** * * * * * *
21545273 GGATCGAAAGCACACAAAGAGGGACCCGA-TCGATCCTCGGCTTGTGTATCCCGCCCCTCTGGCA
766 GGATCGGCAGCACGTAGAGGGGGACCCGACT-GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* ** * *
21545337 GGCTCAGCGCCTGCACACT-CGTTTCGTGGGTTGACTTAG
830 GGCTGAGCGCCCACACGCTAC-TTTCATGGGTTGACTTAG
21545376 GCATACGGAGTTCATTCCCAGT
1 GCATACGGAGTTCATTCCCAGT
21545398 GTAGGCATAT
Statistics
Matches: 9398, Mismatches: 905, Indels: 741
0.85 0.08 0.07
Matches are distributed among these distances:
849 3 0.00
850 264 0.03
851 70 0.01
853 2 0.00
859 1 0.00
861 6 0.00
865 93 0.01
866 6 0.00
867 171 0.02
868 835 0.09
869 869 0.09
870 226 0.02
871 14 0.00
872 92 0.01
873 191 0.02
874 4 0.00
875 7 0.00
876 16 0.00
877 94 0.01
878 165 0.02
879 58 0.01
880 62 0.01
881 5 0.00
882 4 0.00
883 131 0.01
884 107 0.01
885 1 0.00
886 7 0.00
887 310 0.03
888 133 0.01
889 95 0.01
890 264 0.03
891 160 0.02
892 881 0.09
893 241 0.03
894 297 0.03
895 342 0.04
896 262 0.03
897 40 0.00
898 122 0.01
899 216 0.02
900 14 0.00
901 205 0.02
902 822 0.09
903 120 0.01
904 447 0.05
905 153 0.02
906 8 0.00
907 11 0.00
908 4 0.00
909 83 0.01
910 244 0.03
911 358 0.04
912 11 0.00
913 2 0.00
914 3 0.00
915 1 0.00
916 2 0.00
917 4 0.00
918 7 0.00
919 4 0.00
920 1 0.00
921 1 0.00
923 1 0.00
925 3 0.00
926 1 0.00
927 1 0.00
928 3 0.00
930 1 0.00
931 1 0.00
932 2 0.00
933 1 0.00
935 2 0.00
936 2 0.00
937 8 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (868 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGTACCGGACTGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCTCGAACCTCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCTCCGCTCGTTTCGTCAGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGT
AGAGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCACAC
GCTACTTTCATGGGTTGACTTAG
Found at i:21545412 original size:26 final size:26
Alignment explanation
Indices: 21545373--21545452 Score: 115
Period size: 26 Copynumber: 3.1 Consensus size: 26
21545363 TGGGTTGACT
* *
21545373 TAGGCATACGGAGTTCATTCCCAGTG
1 TAGGCATATGGAGTTCATTCCCAGTC
* *
21545399 TAGGCATATAGAGTTCATTCCCAATC
1 TAGGCATATGGAGTTCATTCCCAGTC
*
21545425 TAAGCATATGGAGTTCATTCCCAGTC
1 TAGGCATATGGAGTTCATTCCCAGTC
21545451 TA
1 TA
21545453 AGATCAGACC
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.28, C:0.23, G:0.20, T:0.30
Consensus pattern (26 bp):
TAGGCATATGGAGTTCATTCCCAGTC
Found at i:21546697 original size:427 final size:427
Alignment explanation
Indices: 21545902--21546750 Score: 1173
Period size: 427 Copynumber: 2.0 Consensus size: 427
21545892 TCTTGAAACT
**
21545902 TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGCGAAG
1 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGCGAAG
*
21545967 GCTTAAGGGACCATTGTATGAATTTACAAGCATTAAAAATGGCATTGGCATGCAGAAATATGAAG
66 GCTTAAGGGACCATTGTATGAATTTACAAGCATTAAAAATGGCATTGGCACGCAGAAATATGAAG
* ** * * *
21546032 ATGTGCCTAAAGGCACCTACCACTCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCAAC
131 ATGTACCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAAC
* * * * *
21546097 GTAGTGCCCGCCCACCCGGCCTCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCAATC
196 GTAGTGCCCACCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCATAGGCATACAGAGTTCAATC
* * * * * * * *
21546162 CCAGTCTAAGATCGGACCGGATGGAGGGTTTCGGTAGCAGGATCGATAGCACACAGAGGGGGACC
261 CCAATATAAGATCGGACCGGATGAAGGGTTGCGGCAGCAGGATCGACAACACACAGAAGGGGACC
* * * * * * * *
21546227 CGATCGGTCTATGACTTATGCATCTCATCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCTT
326 CGATCGATCCACGACTTACGCATCCCACCCCTCTGGGCGGCTGAGCGCCCGCACGCTCGTTTCGT
*
21546292 GGGTTGACTTAGGCATACGGAGTTCATTCCCAAATCG
391 GGGTTGACTTAGGCATACGAAGTTCATTCCCAAATCG
* *
21546329 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
1 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGCGAAG
*
21546394 GCTTAAGGGACCATTGTATGAATTTACAAGCCA-TAAAAATGGCATTGGCACGTAGAAATATGAA
66 GCTTAAGGGACCATTGTATGAATTTACAAG-CATTAAAAATGGCATTGGCACGCAGAAATATGAA
**
21546458 GATGTACCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
130 GATGTACCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAA
* * * * *
21546523 CGTAGTGCCCACCCGCTCGCCCGCCCGCTTGTTTCATCGGTTGGCATAGGCATACGGAGTTCATT
195 CGTAGTGCCCACCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCATAGGCATACAGAGTTCAAT
* ** * *
21546588 CCCAATATAAGATTGGATTGGA-GCAAGGGTTGCGGCAGCAGGATCGGCAACACGCAGAAGGGGA
260 CCCAATATAAGATCGGACCGGATG-AAGGGTTGCGGCAGCAGGATCGACAACACACAGAAGGGGA
* * * * * *
21546652 CCTG-GCTGATCCCCGGCTTGCGCATCCCGCCCCTCTGGGCGGCTGAGCGCCCGCACGCTCGTTT
324 CCCGATC-GATCCACGACTTACGCATCCCACCCCTCTGGGCGGCTGAGCGCCCGCACGCTCGTTT
*
21546716 CGTGGGTTGACTTAGGCATATGAAGTTCATTCCCA
388 CGTGGGTTGACTTAGGCATACGAAGTTCATTCCCA
21546751 GTCTAAGCAT
Statistics
Matches: 366, Mismatches: 53, Indels: 6
0.86 0.12 0.01
Matches are distributed among these distances:
426 2 0.01
427 362 0.99
428 2 0.01
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (427 bp):
TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGCGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCATTAAAAATGGCATTGGCACGCAGAAATATGAAG
ATGTACCTAAACCCACCTACCACCCTACCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCAAC
GTAGTGCCCACCCACCCGCCCGCCCGCTCGTTTCATCGGTTGGCATAGGCATACAGAGTTCAATC
CCAATATAAGATCGGACCGGATGAAGGGTTGCGGCAGCAGGATCGACAACACACAGAAGGGGACC
CGATCGATCCACGACTTACGCATCCCACCCCTCTGGGCGGCTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGAAGTTCATTCCCAAATCG
Found at i:21548296 original size:275 final size:276
Alignment explanation
Indices: 21547799--21548348 Score: 881
Period size: 275 Copynumber: 2.0 Consensus size: 276
21547789 CTGAAATGGG
* *
21547799 GACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
1 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
* * * **
21547864 ATGGCAACAAAAATTCAAGGATCACGTCTACCAATTTGGGGCCAAAACTCCTTCTGAAAAAATTT
66 ATGGCAACAAAAATACAAGAATCACGACTACCAATTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * *
21547929 TAAAAAATCTCGAACCAAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCA
131 TAAAAAATCTCAAACCAAAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCATCTTGCCA
21547994 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGG
196 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGG
21548059 CACGTAGAAATATGAT
261 CACGTAGAAATATGAT
*
21548075 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGC
1 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
**
21548140 AT-GC-ACAAAAATACAAGAATCACGACTACCAAGTTTTTGGCCAAAACTCCTTCCAAAAAAATT
66 ATGGCAACAAAAATACAAGAATCACGACTACCAA-TTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * *
21548203 TTAAAAAATC-CTAAACCACAAAATGTTTCAAAAATCATAAAAAATAGAAAACGAGTCGTCTTGC
130 TTAAAAAATCTC-AAACCAAAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCATCTTGC
* * *
21548267 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAGGCCATAAAAATGGCATT
194 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATT
*
21548332 GGCATGTAGAAATATGA
259 GGCACGTAGAAATATGA
21548349 AGATGTACCT
Statistics
Matches: 252, Mismatches: 20, Indels: 5
0.91 0.07 0.02
Matches are distributed among these distances:
274 26 0.10
275 162 0.64
276 64 0.25
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (276 bp):
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
ATGGCAACAAAAATACAAGAATCACGACTACCAATTTGGGGCCAAAACTCCTTCCAAAAAAATTT
TAAAAAATCTCAAACCAAAAAAAGTTTCAAAAATCATAAAAAATAGAAAACGAGTCATCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGG
CACGTAGAAATATGAT
Found at i:21548644 original size:26 final size:26
Alignment explanation
Indices: 21548615--21548667 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21548605 GTTGACTTAG
21548615 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
21548641 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21548667 G
1 G
21548668 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21553317 original size:894 final size:898
Alignment explanation
Indices: 21550841--21558786 Score: 9124
Period size: 894 Copynumber: 8.9 Consensus size: 898
21550831 TTGGCTTAGA
* ** * * *
21550841 CATACGGAGTTCATTCCCAGTCTAAGATCAAACAGGACCGAGGGTTGCGACAGCACATGCTTGGC
1 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** * **
21550906 TCAGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATTATCGGAGCATCGTCGGAGAA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * * * *
21550971 CTTGATCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGGGGATGTGCACACATGATGTGC
131 CCTGACCGACGGCATTGGGGTTCCGACGATC--GGGGG--GGGGGG-TGTGCGCACATGATGTGC
* * *
21551036 AATGGGTGCTGGTCCTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* ** * *
21551101 CCCCCTTAAAGAGCTTTTGAGATTTTGTAGGTTTGCTACCAGTAGCCATTAAAGTGTATGAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
21551166 GGGACACTTTTTTCAAATGGTCTCAAAATCTTATACAGTTCAACTTTTTAGCTGAACTTTTTTT-
321 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTG
** ** * *
21551230 TGCATGCCAACAAAAATACAAGGATCACGTCTAAGAAGTTTGGGGCCAAAACTAGTTCCAAAAAA
385 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * *
21551295 ATTTAAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
450 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * * *
21551360 GCCATGAAACTTCATGTGAAGGCTTAAAGGACCATTGTATGCATTTCCAAGCCATAAAAATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * ** *
21551425 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACGTATGACCCTATC-ATCCACGGCTTGCA
580 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
21551489 CATCCCGTCTCTCTGGCTGGCGTAGAGCCTGCCCGCCCGCTCGCCCGCTCGTTTCGTCTGTTGGC
645 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGC-CGTCCGCTCGTTTCGTCGGTTGGC
* ** * * * * ** * * *
21551554 TTAGGCATACGAAGTTTGTTTCTAGTCTAAGATCAGATCGGATTGAGGGTTACAGCAGAAGGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * ** * * * * *
21551619 AACACCACGTAGAGGGGGACTCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGACTGGCTGA
774 GACAGCACACAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * ** * *
21551684 GCCCCCGCACGCTCATTTTATGGGTTGACTTAGGCAAACAGAGTTCATTCCCAGTCTAAG
839 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * *
21551744 CATATGGAGTTCATTTCCAGTCTAAGATCGGATCAGACCGAGGGTTGTGGCAGCACATGCTGGGA
1 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * **
21551809 TCGGGCATGTGCTGGT-TCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAGAA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * * * * *
21551873 CTTGACC-AGTGGCATTAGGGTTCTGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTG
131 CCTGACCGA-CGGCATTGGGGTTCCGACGATC-GGGGG--GGGGGGTGTGCGCACATGATGTGCG
*
21551937 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
21552002 CCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGAGTCTGAAATAG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
21552067 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAACTTTTTTTAT
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGT
* * * * *
21552132 GCATGCCAACCAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAAATCCTTCCAAAAAAA
386 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * * ** * * * *
21552197 TTTTAAACAATCTCGAACCGAAAAAAGTTTTGAAAATCGTAAAAAATAGAAAAGGAGTCCTCTTG
451 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
21552262 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTTACAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
21552327 TGGCATGCAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCACGGCTTGCGT
581 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
** * *
21552392 ATCCCGTCTCTCTGGCTTGCATA--G--TGCCCG--C-CCGTCCGCTCGTTTCTTCGGTTGGCTT
646 ATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCGTCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
21552450 AGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAAACCAAGGGTTGTGGCAGCAGGATCGG
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * * * *
21552515 TAGCACACAAAGGGGGACCCGACCGATCCTCGGGTTACACATCCCACCCCTTTGGCCGGCTGAGC
776 CAGCACACAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
* * *
21552580 GCCCGCACGCTCGTTTCGTGGATTGACTTAGGCGTACGGAGTTCATTCCTAGTCTAAG
841 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* ** * * * **
21552638 CATATAGAGTTCATTCCTGGTCTAAGATCGGACCGGTCCGAGGTTTGCGACAGCACATGCCAGGC
1 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * * * *
21552703 TCGAGCATGTACTAGTGCCATATTTTTCTTCGTCGAGACACCATCGCCAGAGCATCGTCGGA-AA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * * * * * * * * * *
21552767 GCCTGATCGACAGTAATGGGGTTCCGGCAATCAGAGGGGGGAGTGTGTGCTCATGATGTGCGATG
131 -CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGGGGGTGTGCGCACATGATGTGCGATG
* *
21552832 GGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AGAACTAACACCCC
195 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* * * * *
21552896 CTTAAAGAGCATTTGAGATTTCATAGGTTTGCTGCTAGTAGCTATTAAAGTGTCTGAAATGGCGA
260 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * *
21552961 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGTTTTTGGCTGCATTTTTTTGTGCAT
325 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * ** *
21553026 GCCAAAAAAAATAAAAGGATCACGTCTACCAAATTTGGGGTGAAAACT-CTTTGGAAAAAATTTT
390 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
*
21553090 AAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCCTG-AAAATA-AAAACGAGTCGTC-TGACCA
455 AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG-CCA
* * * *
21553151 TGGAAACTTCACATGAAGGCATAAGGGACCATTGTACGAATTTACAAGCCATAAAAATGGGATTG
519 T-GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
***
21553216 GCACATAGAAATATGAAGATGTGCC-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
583 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
21553280 CCCGTCTCTCTGGCCGGCATAGTGCCTGCCCGCCCGCC-T--GCTCGTTTCGTCGGTTCGCTTAG
648 CCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCGTCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * **
21553342 GCATATGGAGTTCATTCCCAGTCTCAGATCGGACCAGACCAAGGGTTACAGCAGCAGGATCGGTA
713 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACA
* * ** ** * * *
21553407 GCACGCAAAGGGTGACAAGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTAATCGC
778 GCACACAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* *
21553472 CCGCATGCTCATTTCGT-GG--G---T-----T---GA---C-TT---AG-----G
843 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* *
21553502 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCAGCACAAGCTGGGC
1 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * *
21553567 TCGGGCATGTGCTGGTGTCACATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCGCCGGAGAA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* * * *
21553632 CCTGACCGACGGCATTGGGGGTT-TGACGATCAGGGGGGCCAGGGGGTGTGTGCTCATGACGTGC
131 CCTGACCGACGGCATT-GGGGTTCCGACGATC-GGGGGG---GGGGGTGTGCGCACATGATGTGC
* *
21553696 GATGGATGCTGGTA-------C-----TTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCACA
191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
21553749 -CCCTTATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
256 CCCCCT-TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
21553813 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * ** * * *
21553878 TGCATGCCAAAAAAAAAACAAGGATCACGTCTAAAAAGTTTGGGGCGAAAAATCCTTTCAAAAAA
385 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * * * *
21553943 AATTGAAAAAATCCCGAACCGGAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTTTT
450 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
21554008 GCCATGAAACTTCACGTGGAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
21554073 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTCCCACCCTATCGATCCCCGGCTTGCG
580 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * * *
21554138 CATCTCGTCTCTCTGGTTGGTGTAGTGCCTGCCCGTCCGCC-TGCCTGTTCGTTTCGTCGATTGG
645 CATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCGT-CC-GCTCGTTTCGTCGGTTGG
* * * * * *
21554202 CTTAGGCGTACGGAGTT--TTTCCAGTCTAAGATCAGATC-GAACTGGGGGTTGCGACAGCAGGA
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGGCAGCAGGA
* * * * * * * *
21554264 TCAACAGCTCACAGAA-GGGGACTCGATCGATCCTCAGCTTGCGTATCTCGCCCCTCTGGCCGGC
772 TCGACAGCACACA-AAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
*
21554328 TGAGCGCCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
836 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-T-----TC----C-
21554393 TACGAAGTTCATTCCAAG
890 --C--AG-TC--T--AAG
*
21554411 TCTAAGAATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGCGGCAGCACATG
1 -C-----ATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATG
* * *** * * *
21554476 CTGGGCTCAGGCATGTGCTAGTGATGCATATTTCTTCGCCAGGGCACCATCG-CTGGAGCATCGT
60 CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGT
* *
21554540 CGGAGAACCTGACCGACGGCATTAGGGTTCCGACGGTC-----GGGGGGTGTGCGCACATGATGT
124 CGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGGGGGTGTGCGCACATGATGT
* ** * *
21554600 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCGCCAAACCTTGAAAACTCA
189 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
21554665 CACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAA
254 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
21554730 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTT
319 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
21554795 ATGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-ATCTGAAA
384 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
*
21554859 AAATTTTAGAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
448 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
21554924 TTGCCATGACACTTCACGTGAAGGCTTAAGGTACCACTGTATGAATTTACAAGCCATAAAAATGT
513 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
21554989 TATTGGCATGTAGAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
578 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
21555054 TGCATCCCTTCTCTTTGGCCAGCGTAGTGCCTGCCCACCCG-C-T-CG-T--TTT-GTCGATTAG
643 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCGTCCGCTCGTTTCGTCGGTTGG
* * *
21555112 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCAGGAT
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * * * *
21555177 TGGCAGCTCACAGAGGGGGACCCAACCGATCCCC-GCATGCTCATCCTGCCCCTCTGGCCGGCTG
773 CGACAGCACACAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
21555241 AGCGCCCGCACGTTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAAG
838 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * *
21555302 CATACGGAGTTCATTCGCAGTCTAAGATCGGATTGGACCGAGGGTTACGGCAGCACATACTGGGC
1 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* ** * *
21555367 TCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGAAGAA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
* *** * *
21555432 CCTGATCGGTAGCATTGGGGTTCCAACGATCGGGGGGCAGGGGGTGTGCCCACATGATGTGCGAT
131 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG--GGGGGTGTGCGCACATGATGTGCGAT
* * * *
21555497 GGGTGTTGATACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACA-CC
194 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
21555561 CCTTATAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCATTAAAATGTTTGAAATGGGG
259 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * * * * *
21555626 ACACTTTTTTCAAATGGCCACAAAATTTTGTACATTTTGAGTTTTTAGCTGAATTTTTTCGGGCA
324 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * * *
21555691 TGTCAAAAAAAATACAAGTAACACGTCTACCAAGTTTGGGGCCAAAAATTCTTTCGAAAAAATTT
389 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
* * *
21555756 TAAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
454 T-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
21555821 ATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAATATGGCATTG
518 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* ** * *
21555886 GCATGCAGAAATATGAAGATGTACCTAATTCCACCTACCACCTTATCGATCCAC-GCTTGTGCAT
583 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * *
21555950 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCTAC-CCGCCCGCTCGTTTCATCGGTTGGCTT
648 CCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCC--CGCCGTCCGCTCGTTTCGTCGGTTGGCTT
* * ** * * * * *
21556014 AGGCATACAGAGTTCATTCCCAGTTTAAGATTGGTCCAAACTGAGGGTTGCGGCAGAAAGATCGA
711 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * * *
21556079 CAGCAC-TAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCGCCCCTCTGGTCC-GTTGAG
776 CAGCACACAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CCGGCTGAG
** *
21556142 CAACCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
840 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
21556201 CATAC-GAAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACGTGCTGGG
1 CATACAG-AGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** *
21556265 CTCGGGCATGTGCTAGTGCCGTATTTTTCTTCG-CTGGGGCATCATCGTCGGAGCATCACCGAAG
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAG
* *
21556329 AACCTGACCGGCGGCATTAGGGTTCCGACGATCGTGGGGGCCGGGGGGTGTGCGCACATGATGTG
129 AACCTGACCGACGGCATTGGGGTTCCGACGATC--GGGGG--GGGGGGTGTGCGCACATGATGTG
* ** * *
21556394 CGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCGCCAAACCTTGAAAACTCAC
190 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
21556459 ACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTAAAAT
255 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
21556524 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTA
320 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
21556589 TGCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-ATCTGAAAA
385 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAA
*
21556653 AATTTTAGAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
449 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
21556718 TGCAATGAAACTTCACATAAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
514 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
21556783 ATTGGCATGCA-AATATATGAAGATGACCCTAAACCCACCTACCACCCTATCGATCCACGACTTG
579 ATTGGCATGCAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
** * *
21556847 CGCATCTTGTCTCTCTGGCCGGCGTAGTGCCTACCCACCCG-C-T----T-GTTTCGTCGGTTGG
643 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCGTCCGCTCGTTTCGTCGGTTGG
* * * * * * *
21556905 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGTGGTAGCATGAC
708 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* ** * * *
21556970 CGATAGCATGCAGAA-GGGGACCCGATCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGTT
773 CGACAGCACACA-AAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
21557034 GAGTGCCCGCACACTCGTTTCATGGGTTGACTTAGGCATACGGCGTTCATTCCCAGTCTAAT
837 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * *
21557096 CATACGGAGTTCCTTACCAGTCTAAGATCAGACTGGATCGAGGGTTGCGGCAGCACATGCTGGGC
1 CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
* * * * * *
21557161 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCGTCGCCGAAGAATC-ACTGGAGA
66 TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAGA
* *
21557225 ACCTGACCG-CGGCATTGGGGTTCCGACGATCGGGGGGCCGGAGGGGTGTGCGCACAAGATGTGT
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGG--GG-GGGGTGTGCGCACATGATGTGC
* * *
21557289 GATGGGTACTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACA
191 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
21557354 CCCCCTTCAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
256 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
21557419 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGGTAAATTTTTTTGT
321 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * ** * *
21557484 GCATGCCAACAATAATACAAGGATCATGTCTACCAAGTTTGTTGCCAAAACTCCCTCCGAAAAAA
386 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* *
21557549 TTTTAAAAAATCCCTAACCG-AAAAAGTTTCAAAAAAATCATGAAAAAATAGAAAACGAGTTGTC
451 TTTTAAAAAATCCCGAACCGTAAAAAGTTTC--AAAAATCATG-AAAAATAGAAAACGAGTCGTC
* *
21557613 TTGCGATG-AACTTCAACGGTGAGAGGCTTCAGGGA-CATTGTAATGAATTTACAAGCCATAAAA
513 TTGCCATGAAACTTC-AC-GTGA-AGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAAA
** * *
21557676 ATGGCA-TGGCATGCA-AATCATATGAAGAT-ACCCTAAACACACCTAGCAACCCCCCCTATCGA
574 ATGGCATTGGCATGCAGAA--ATATGAAGATGTGCCTAAACCCACCT----A-CCACCCTATCGA
* * * * *
21557738 TCCCACGGCTTGCGCATGCCTGT-TCT-TGG-CGACGTAATGCC-GCCCACCCG-C-T-CG---A
632 T-CCACGGCTTGCGCAT-CCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCGTCCGCTCG
*
21557793 TTT-GTCGGTTGG-TTAGGCAATACGCGAGTTCATTTCCCAGTCTAAGATCACAGACCAGACTGA
695 TTTCGTCGGTTGGCTTAGGC-ATACG-GAGTTCA-TTCCCAGTCTAAGAT--CAGACCAGACCGA
* * * * * * * * *
21557856 AGGTTGCGGCAACGCGGGAATGGATAGCAC-TAGAGGGGGACCCGTGCCGATCCCCAGCTTACGC
755 GGGTTGCGGC-A-GCAGG-ATCGACAGCACACAAAGGGGGACCCG-ACCGATCCCCGGCTTGCGC
* * * * ** * * * *
21557920 TTCCC-ACCTTCTGGCCGGC-GAGCACCCATTACGTTCATTTCGTGGGTTGAACTCTGGGCATCC
816 ATCCCGCCCCTCTGGCCGGCTGAGCGCCC-GCACGCTCGTTTCGTGGGTTG-ACT-TAGGCATAC
21557983 GGGAGTTTCATTCCCAGTCTAAG
878 -GGAG-TTCATTCCCAGTCTAAG
* ** * * *
21558006 CATA-AGGAGTTCATTCCCAGTCTAAGATCAGACCAAACCGATGGTTGTGGTAGCACATGCTGGG
1 CATACA-GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * *
21558070 CT-GGGCAAGTGCTGGTGTCGTATTTTTCTTCATCGGGGTACCATCGTCGGAGCATCGTCGGAGA
65 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
21558134 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGTACATGATGTGCG
130 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGG--GGGGGGTGTGCGCACATGATGTGCG
21558199 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
192 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
21558264 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGG
257 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * *
21558329 GGCCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTTGTTGAATTTTTTTGTG
322 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * *
21558394 CACGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTTGGGCCAAAAATCCTTTCGAAAAAAT
387 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
** * * * *
21558459 TTTAAAAAATCTTGAACAGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTTGTCTTGC
452 TTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
21558524 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
517 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* ** **
21558589 GGCATGCAGAAATATGAAGATGTGCCTAAACACACCTACCACCCTATCGATGAACAACTTGCGCA
582 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * ** * *
21558654 TCCCGTCTCTCTGGCTGGCGTAGTGCCCG-TCGAACCATCCG-CCTGCTTGTTTCATCGGTTGGC
647 TCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG--CCCGCCGTCC-GCTCGTTTCGTCGGTTGGC
* * * ** * * *
21558717 TTAGTCATACAGAGTTAATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTGCGGCAGTAGGATC
709 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
21558782 GACAG
774 GACAG
21558787 GACGTAGAGG
Statistics
Matches: 6014, Mismatches: 826, Indels: 405
0.83 0.11 0.06
Matches are distributed among these distances:
856 30 0.00
857 169 0.03
858 19 0.00
859 27 0.00
860 85 0.01
861 85 0.01
862 3 0.00
863 99 0.02
864 127 0.02
865 42 0.01
866 1 0.00
868 33 0.01
869 3 0.00
872 2 0.00
873 1 0.00
874 1 0.00
876 2 0.00
877 2 0.00
879 1 0.00
880 1 0.00
882 1 0.00
884 1 0.00
885 139 0.02
886 72 0.01
887 88 0.01
888 24 0.00
889 20 0.00
890 203 0.03
891 333 0.06
892 319 0.05
893 24 0.00
894 607 0.10
895 292 0.05
896 37 0.01
897 33 0.01
898 82 0.01
899 290 0.05
900 238 0.04
901 517 0.09
902 348 0.06
903 88 0.01
904 29 0.00
905 62 0.01
906 106 0.02
907 79 0.01
908 23 0.00
909 355 0.06
910 149 0.02
911 86 0.01
912 68 0.01
913 3 0.00
914 7 0.00
915 140 0.02
917 4 0.00
918 409 0.07
919 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
CATACAGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGGGGGTGTGCGCACATGATGTGCGATGG
GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCGCCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCA
CACAAAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
Found at i:21554393 original size:26 final size:26
Alignment explanation
Indices: 21554364--21554442 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
21554354 GTTGACTTAG
21554364 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
21554390 GCATACGAAGTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
21554416 GAATACAGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21554442 G
1 G
21554443 ATCGGACCGG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 47 1.00
ACGTcount: A:0.32, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21555311 original size:26 final size:26
Alignment explanation
Indices: 21555275--21555327 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21555265 GTTGACATAG
21555275 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21555301 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21555327 G
1 G
21555328 ATCGGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21556211 original size:26 final size:26
Alignment explanation
Indices: 21556174--21556226 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21556164 GTTGACTTAG
*
21556174 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21556200 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21556226 G
1 G
21556227 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21557100 original size:26 final size:26
Alignment explanation
Indices: 21557070--21557120 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21557060 TTGACTTAGG
* *
21557070 CATACGGCGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTACCAGTCTAAT
*
21557096 CATACGGAGTTCCTTACCAGTCTAA
1 CATACGGAGTTCATTACCAGTCTAA
21557121 GATCAGACTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.29, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTACCAGTCTAAT
Found at i:21559613 original size:26 final size:26
Alignment explanation
Indices: 21559577--21559629 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21559567 CTTGACCTAG
21559577 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21559603 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21559629 G
1 G
21559630 ATTGGTCTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21561349 original size:26 final size:26
Alignment explanation
Indices: 21561320--21561372 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21561310 GTTGACTTAG
21561320 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21561346 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21561372 G
1 G
21561373 ATTGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21562265 original size:26 final size:26
Alignment explanation
Indices: 21562226--21562275 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21562216 GTTCGCTTAG
* *
21562226 GCATACGGAGTTCATTCCCAGTCTGA
1 GCATACGAACTTCATTCCCAGTCTGA
21562252 GCATACGAACTTCATTCCCAGTCT
1 GCATACGAACTTCATTCCCAGTCT
21562276 AAGATCGGAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.30, G:0.18, T:0.28
Consensus pattern (26 bp):
GCATACGAACTTCATTCCCAGTCTGA
Found at i:21563725 original size:882 final size:876
Alignment explanation
Indices: 21558816--21563774 Score: 5892
Period size: 883 Copynumber: 5.6 Consensus size: 876
21558806 GTTGGGGCAC
* * * * * * *
21558816 CATCGTCGGAGCATCATCAGAGAACCTGACCAGCGG-TTTTGGGGTTCGGGCGATCGGGGGGCCG
1 CATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTC-GACGATCGGGGGGCCG
* * *
21558880 GGGGGCGTGTACACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCC
65 GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
21558945 TCATCAAACCTTGAGAAGTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
130 TCATCAAACCTCGAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
21559010 TAGCCATTAAAGTGTCTGAAGTGGGGACAATTTTTTCAAATGTTCACAAAATCTTGTACACTTCG
194 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
21559075 AGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGG
259 AGTTTTTAGCTGAATT-TTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
21559140 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTACAAAAATCATGA
323 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGA
* *
21559205 AAAATAGAAAACGAGTCGTCTTGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
388 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAA
* *
21559270 TTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCTCCTACCA
453 TTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
*
21559335 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTG-C-CC-G--C--CCGC
518 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-CGCGTAGTGCCGCCTGCCCGTCCGC
* * * * ** *
21559393 CTGCTC-ATTTCGTCGGTTGGCTTAGGCACACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAC
582 CCGCTCTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGACCAGAC
** * ** * ** * * * *
21559457 TGAGGGTTACGGT-AGCACAATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCCAGCCTGCGC
646 CAAGGGTTGC-GTCAGCAGGATTGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGC
* * * * * *
21559521 ATCCCGCCCCTTTGGCAGGCTGAGCGCCCGCACACTCGTTTCGTGGCTTGACCTAGGCATACGGA
710 ATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGA
* * * * *
21559586 GTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGTCTAAGATTGGTCTGGATCGAGGGTTG
775 GTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTG
** * * * * **
21559651 CGGCAGCA-CATGCTGGGCTC-GGGCATGTCCCTGTGCCTCATTTTT
840 CGGCAGCATTTTGCT-TG-TCGGGGCA---CCAT-CGCC-GA---AG
* * ** * * * * * * * *
21559696 CTTCG-CTGGGGCCCTATCACCGGAGAAACAGACTGACCGCATTGGGGTTCCGATGATCGGGGGG
1 CATCGTC-GGAG--C-ATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTCGACGATC-GGGGG
** ** **
21559760 GCCGAGGGTGGTGTGCGTACAAAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-TTCCCC
61 GCCG-GGG-GGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
* * * *
21559824 TATCTCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAATTTACAAGTTTGC
124 TATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
21559889 TGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
188 TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
* * *
21559953 AATTCGAGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAA
253 ACTTCGAGTTTTTAGCTGAAT-TTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
* *
21560018 GTTTGGGGCCAAAAATCCTTCC-AAAAAATTTTTAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
317 GTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAA
* * *
21560082 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTAACGTGAAGGCTTCAGGGACCATTG
382 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTG
* * *
21560147 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGTATAAATATGAAGATGTGCCTAAACACAC
447 TATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCAC
* * *
21560212 CTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGATCCACGTA-----G--TG--C
512 CTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG-GCCGCGTAGTGCCGCCTGCCC
** *
21560268 --CCGCCCGCT-TGTTTTGTCGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
576 GTCCGCCCGCTCTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGA
** * * * * * *
21560330 CCAGACTGAGGGTTGCAGT-AGTAGGATCGGCAGCACACAGAGGGGGACCTGGCCGATCCTCGGC
640 CCAGACCAAGGGTTGC-GTCAGCAGGATTGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGC
* * * * *
21560394 TTGCGCATCCCGCCCCTCTGGCTGGTTGAGCGCCCACACGCTCGTTTCATGGGTTGGCTTAGGCA
704 TTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* ** ** * ** * * * *
21560459 TACAGAGTTCATTCCCAGTCTAAG-AT-C--AGACCAGACCGAGGGT---TTC-GACAGCACATG
769 TACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGAC-CG
* * * * * * *** **
21560516 CTGGGCT-CGG--GCA-TGTGCTGGTAC--CGTATTTTTCTTC--A-
833 -AGGGTTGCGGCAGCATTTTGCTTGT-CGGGGCA-CCATCGCCGAAG
* * * * *
21560554 C--CG-GGGCA-CTATCGCCAGAGAACCTGACCGGTGGCATTAGAGTTTC-AGCGATCGGGGGGC
1 CATCGTCGG-AGC-ATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTCGA-CGATCGGGGGGC
21560614 CGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
63 CGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
21560679 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
128 CCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* * * *
21560744 AGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCATAAAATCTTGAACACTT
192 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
21560809 CGAGTTTTTAGCTGAATTTTTTATGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTG
257 CGAGTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
*
21560874 GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
322 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
* * *
21560939 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAATGCGTAAGGGACCATTGTATG
387 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT-AAAGGCTTAAGGGACCATTGTATG
* * **
21561004 AATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAATGCGAAGATGTGCCTAAACCCACCTAC
451 AATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
21561069 CGCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCTGCCCGCC
516 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTGCC-GCCTGCCCGTC
* ** *
21561134 CACCCGCTC-GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATTGGACCGG
579 CGCCCGCTCTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAG
* * * * *
21561198 ACCGAGGGTTACGGT-AGCAAGA-TCAGCAGCACGTAGAGGGGGACCCGACCGATCCTCGGCTTG
644 ACCAAGGGTTGC-GTCAGCAGGATTGA-CAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTG
* * *
21561261 AGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCATGCTCGTTCCGTGGGTTGACTTAGGCATAC
707 TGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
* * *
21561326 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATTGGA-TCGGACTGAGG
772 GGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACT-GGACCGAGG
* * * *
21561390 GTTGCGGCAGCATATGCTGGGCTCGAGCATGTGTAGGTGC-CGCATTTGTCTTCACTGGGACAC
836 GTTGCGGCAGCAT-T--T----T---GC-T-TGTCGGGGCAC-CA----TC-GC-C---GA-AG
* ** * * *
21561453 CATCGCCGGAGCATCACCGGAGAACCTGACCGGTGACTTTTA-GGTTTCGACGATCGGAGGGGCC
1 CATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGC-ATTAGGGTTTCGACGATCGG-GGGGCC
* *
21561517 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCC
64 GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * * *
21561582 CCCATCAAACCTCAAGAACTCACACCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAA
129 CTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* *
21561647 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCAGAAAATCTTGTACACTTCG
194 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
21561712 AGTTTTTAGCTG-ATGTTTTTCATGCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTG
259 AGTTTTTAGCTGAAT-TTTTT-ATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *
21561776 GGACCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTACCAAAATCGTG
322 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTG
* *
21561841 AAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
387 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGA
* *
21561906 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACC
452 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* ** *
21561971 ACCCTATCGATCCACGGCTTGCGTATCCCGTCTCTCTGAACGACGTAGTGCCCGCCTGCCAGTCC
517 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTG-CCGCCTGCCCGTCC
* * *
21562036 GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGAAGTTCATTGCCAGTCTAAGATCATAC
580 GCCCG--CTCT-GTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAGATCAGAC
* * * * * * * *
21562101 CAGATCAAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAAGGGGACCCGGCCAATCCCCGGCTT
641 CAGACCAAGGGTTGCGTCAGCAGGATTGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTT
* * * *
21562166 GTGCATCTCGCCCCTTTGGCCGGTTGAGTGCCCGCACGCTCGTTTCCTGGGTTCG-CTTAGGCAT
706 GTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTT-GACTTAGGCAT
* * * *
21562230 ACGGAGTTCATTCCCAGTCTGAGCATACGAACTTCATTCCCAGTCTAAGATCGGACCGGATCGAG
770 ACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAG
** ** ** **
21562295 GGTTGCGGCAGCA-CATGCGGGGCTC-GGGCATTCC-T-GGTGTCG
835 GGTTGCGGCAGCATTTTGC-TTG-TCGGGGCA--CCATCGCCGAAG
* * * * *
21562337 CATTTTTCTTCACCAGGTCACCATCGTCGGAGAACTTGATCGGCGGCATTAGGGTTTCGATGATC
1 CA----TCGT---C-GG--AGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTCGACGATC
* * *
21562402 GGGAGGCCGGGGGGTGTGCACCCATGATGTGCGATGGGAGCTGGTACTTGGCCCTTATATTGGCC
56 GGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
21562467 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
121 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
21562532 GTTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGT
186 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
21562597 ACACTTCGAGTTTTT-GCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAAC
251 ACACTTCGAGTTTTTAGCTGAA-TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
21562661 AAGTTAGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAAT-CCAGAATCGTAAAAAGTTTCAA
315 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCA-AACCGTAAAAAGTTTCAA
* * * * *
21562725 AAATCATGAAAAATAGAAAATGAGTCGTCTGGCCATGAAACTTCATGTGAAGGCTTAAGGGACCA
379 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCA
* *
21562790 TTGTAAGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACC
444 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
* * * *
21562855 CACCTGCCACCTTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGTGCTCGCCCG
509 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGTGC-CGCCTG
* * *
21562920 CCCGTCCGCCTGTTCTCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAG
573 CCCGTCCGCCCG--CTC-TGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCAGTCTAAG
* * * *
21562985 ATCAGACCAGACCAAGGGTTGCATCAGCAGGATTGACAGCATGCAGAGGGGGACTCGACTGATCC
634 ATCAGACCAGACCAAGGGTTGCGTCAGCAGGATTGACAGCACGCAGAGGGGGACCCGACCGATCC
* * * *
21563050 TCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGAACACTCTTTTCGTGGGTTGACTT
699 TCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTT
* * * *
21563115 AGGCATACGGAGTTCATTCCCAGTCTAAGAATATGCAGTTCATTCCTAGTCTAAGATCGGACTGG
764 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGG
* *
21563180 ACCGAGGGTTGTGGCAGCATTTTTCTTCGTCGGGGCACCATCGCCGAAG
829 ACCGAGGGTTGCGGCAGCATTTTGCTT-GTCGGGGCACCATCGCCGAAG
* * *
21563229 CATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGG
1 CATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTCGACGATCGGGGGGCCGG
*
21563294 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
66 GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
21563359 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGT
131 CATCAAACCTCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
21563424 AGCCATTAAAGTGTTTGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTCGA
195 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
21563489 GTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
260 GTTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* ** *
21563554 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTTGAAAATTGTGAAA
325 CCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAA
*
21563619 AATAG-AAACGAGTCGTCTTGCCATGAAACTTCACGTAAACGCTTAAGGGACCATTGTATGAATT
390 AATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATT
* *
21563683 TACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
455 TACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACC
*
21563748 CTATCGATCCACAGCTTGCGCATCCCG
520 CTATCGATCCACGGCTTGCGCATCCCG
21563775 AATTTCATTC
Statistics
Matches: 3507, Mismatches: 444, Indels: 254
0.83 0.11 0.06
Matches are distributed among these distances:
850 45 0.01
851 155 0.04
852 150 0.04
853 152 0.04
855 2 0.00
856 2 0.00
858 1 0.00
859 1 0.00
861 2 0.00
863 1 0.00
864 145 0.04
865 43 0.01
866 3 0.00
868 12 0.00
869 3 0.00
870 11 0.00
871 10 0.00
872 10 0.00
873 7 0.00
875 9 0.00
877 1 0.00
878 2 0.00
879 187 0.05
880 7 0.00
881 1 0.00
882 271 0.08
883 438 0.12
884 145 0.04
885 94 0.03
886 48 0.01
887 1 0.00
888 5 0.00
890 6 0.00
891 256 0.07
892 273 0.08
893 202 0.06
894 40 0.01
895 3 0.00
896 1 0.00
897 1 0.00
898 2 0.00
899 1 0.00
900 3 0.00
901 292 0.08
902 238 0.07
903 2 0.00
905 35 0.01
906 187 0.05
907 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (876 bp):
CATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTAGGGTTTCGACGATCGGGGGGCCGG
GGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
CATCAAACCTCGAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
TTTTTAGCTGAATTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAA
ATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATTGTATGAATTT
ACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
TATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGTGCCGCCTGCCCGTCCGCCCGC
TCTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCAGTCTAAGATCAGACCAGACCAAGG
GTTGCGTCAGCAGGATTGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGTGCATCCCG
CCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGCAG
CATTTTGCTTGTCGGGGCACCATCGCCGAAG
Found at i:21565573 original size:26 final size:26
Alignment explanation
Indices: 21565537--21565589 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21565527 GTTGACTTAG
21565537 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
21565563 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21565589 G
1 G
21565590 ATCGACCTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21565923 original size:898 final size:898
Alignment explanation
Indices: 21563861--21572435 Score: 11384
Period size: 898 Copynumber: 9.7 Consensus size: 898
21563851 ATGCCGAGCT
* ** * * *
21563861 GGGGCACCATCATCGGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCAGG
1 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGG
* * *
21563926 GGGGCCAGGGGGGTGTGTGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCC
66 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
21563991 CCTATCCCTCACCAAACCTCAAGAACTCACACCCCCTTGAAGAGCATTTGAGATTTTATAGGTTT
131 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
21564056 GCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
196 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * * *
21564121 ACACTTTGAGTTTTTAGCTGAGTTTTTTTGTGCGTGCCAAAAAAAATACAAGGATAACGTCTAGC
261 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * *
21564186 AAGTTTAGGACCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
326 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAA
* ** * * *
21564251 AATCATGAAAAATAGAAAATTAGTCATCTTGCCACGAAACTTCACGTGAAGGCGTAAGGGACCAT
391 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * *
21564316 TGTATGAATTTACAAGCTATAAAAATGGCATTGGGAGGCAGAAATATGAAGATGTGCCTAAACCC
456 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * *
21564381 ACCGACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCG
521 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG--C-
* * * *
21564446 CCTGCCCGCCTGCTCATTTCGTCAGTTGGCTTAGGCATACGGACTTCATTCCCAGTCTAAGATCA
583 CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
21564511 GACCAGACTGAGAGTTGCGACAGCAGGATCAGCAGCACACAGAGGGGGACCCG-GTCGATCCCTG
647 GACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACT-GATCCCCG
* * * * * *
21564575 ACTTGCGCATCCCGCCCCTCTGGCCGGCTAAACGCCTGCACGCTCGTTTCATGGGTTGACTTAGG
711 GCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* * * * *
21564640 CATACGAAGTTCATTCCTAGTTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAAATGGACC
776 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACT-GACC
** * *
21564705 GAGGGTTATGGCAGAACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTC
839 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * ** * ** * * ** *
21564765 GAGGCGCTATCACCGGAGGATCGTCGAAAAACCTGACCG-CGGCATTAAGGTTCCGACGATCA-G
1 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGG
* **
21564828 GGGGCCGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATAAG-C
66 GGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
21564892 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
130 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
21564957 TACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATGTTG
195 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
** * * *
21565022 TACACTGAGAGTTTTTAGTTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTAC
260 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * *
21565087 CAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGA
325 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAA
* * *
21565152 AAATCGTGAAAAATGGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCA
390 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
21565217 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATCCAGAAATATGAAGATGTGCCTAAACC
455 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
21565282 CACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTCTTTGGCCGGTGTAGTGCCCGCCC
520 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * *
21565347 GCACGCCCGCTCGTTTCATCGATTAGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
585 GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* * * * * * *
21565412 CAGACCGAGGGTTGTGGTAGTAGGATCGGCAACACGCAGAGGGGGACTCGACTGATCCTCGGCTT
650 CAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTT
* * * * *
21565477 ACGCATCTCACCCCTCTGGCCGGTTGAGTGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATA
715 ACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
21565542 CGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGACCTGATCGAGGG
780 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGA-CTGACCGAGGG
*
21565607 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTC
844 TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
21565662 GGGGCACCATCGCCGGAGCGTCACCAGAGAACCTAACCGATGGCATTGGGGTTCCGGCGATCAGG
1 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGG
* * *
21565727 GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGATGGCACTTGGCCCTTATATTTGCCC
66 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
21565791 CTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
131 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
21565856 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGT
196 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
21565921 ACACTTCGAGTTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
261 ACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * * * *
21565986 CAAGTTTGAGACCAAAACACCTTCTGAAAAAATTTTAAAAAATCCCGAA-CGAAAAAAGGTTTTG
325 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAA-GTTTTA
* *
21566050 AAAATCGTGAAAAATAGAAAACAAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
389 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * * * *
21566115 ATCGAATGAATTTATAAGCCACAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAAC
454 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
21566180 CCACCTCCCACCCTATCGATCCACGGCTTGCGCATGCCGTCTCTCTGGCCGGCATAGT-------
519 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * *
21566238 -GCCCACCCGCTCGTTTCATCGGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTATGATC-GA
584 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-
* * * *
21566301 ACCAGACTGAGGGTTGCGACAGTAGGATCAGCAGCACGCAGAGGGGGACCCGA-TCGATCCTCGG
648 ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACT-GATCCCCGG
21566365 CTTACGCA-CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
712 CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* *
21566429 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATAGGATTGGACCG
777 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT-CGACT-GACCG
* * * * * * * * *
21566494 AGGGTTGCGTCAACACATTCAGGGTTCAGGCATGTGCTGGTGTCGCATTTTTCTTCTTT
840 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
** * * **
21566553 GGGGTGCCATCGTCAGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTT-CGATGATC-GG
1 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGG
* * **
21566616 GGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACCTGGCTTTTATATTGGCCC
66 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* ** *
21566681 CCTATCCCTCATAAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTT
131 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
21566746 GCTGCCAGTAGCAATTAAAGTGTCTAAAATTGGGACACTTTTTTAAAATGGTCACAAAATCTTGT
196 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
21566811 ACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGGCTACC
261 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * * * *
21566876 TAGTTTGGGGGCAAAACTCCTTCCAAAAAAATTTTAAAAAATCCCAAACCACAAAAAGTTTTGAA
326 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAA
* ** *
21566941 AATCATGAAAAATAGAAAACGAGT-GTCTTGCCATGAAACTTCATTTGAAGGCTTAAGGTACCAT
391 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
21567005 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
456 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* *
21567070 ACCTACCACCCTTTCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCCG
521 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * * *
21567135 CCCGTCCGCCCGCTTGTTTCATCTGTTGGCTTAGGCATACTGAGTTCATTCCCAGTCTAAGTAT-
586 --C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATC
* *** * * * * *
21567199 GGATTGGACGGGTGGGTTGCGGCAGCTGGATCGGCAGCATGCAGAGGGGGACCCGGCTGATCCCC
646 AGACCAGAC-TGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCC
* * * *
21567264 GGCTTACGCA-CCCGCCCTTCTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAA
710 GGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
21567328 GCATACGGAGTTCATTCCCAGTCTAAG-AT-C--AG---------A--C------C-A--GACCG
775 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACTGACCG
** * * *
21567369 AGGGTTGCGATAGCACATGCTGGGCTCGGGCATGTGCTGGCGCCACATTTTTCTTCATC
840 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * ** * ** * * * *
21567428 AGGGCACCATTGTCGGAGCATCGTCAGAGAAATTGACCGGCGGAATTGGGGTTCTGGCGATCGGG
1 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGG
* *
21567493 GGGGCCGGGGGTGGGTGTGCGCACATGATGTGTGATGGGTGATGGTACTTGGCCCTTATATTGGC
66 GGGGCC-GGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
21567558 CCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
129 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
21567623 TTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTT
194 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
*
21567688 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTTTA
259 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * * *
21567753 CCAAGTTAGGGGCCAAAACTCGTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCA
324 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTA
* *
21567818 ACAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACC
389 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
21567883 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
454 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
21567948 TCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT-TGGCCGGCATAGTGCCCGTC
519 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
21568012 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCTTACAGAGTTCATTCTCAGTCTAAGATCTA-
584 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-AG
* * * *
21568076 ACTC-GACTGAGGGTTGCAGCAGCAGGATTGGCAGCA--CAGAGGGGGACCCGGCCGATCCCCGG
648 AC-CAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGG
* ** * *
21568138 CTTACGCATCCCG-CCCTCTGGCCAGCTGAGCATCCGCACGCTCGTTTCGTGTGTTGACTTAAGC
712 CTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGC
* * *
21568202 ATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGACTG
777 ATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GACT-GACCG
* * * *
21568267 AGGGTTGCGACAGCACATGCTGGGATCGAGCATGTGCTGGTGCCACATTTTTCTTCGTC
840 AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * * * *
21568326 AGGGCACCATCATCGGAGCATCGCCGGAGAACCTGACTGGCGGCATT-GGGTTTCAGTGATC-GG
1 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGG
* * * *
21568389 GGGGCCAGGGCGTGGTATGCGCACATGATGTGCAATGGGTGCTGATACTTGGCCCTTATATTGGC
66 GGGGCC-GGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
21568454 CCCCTACCCCTCATTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
129 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
21568519 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
194 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
21568584 GTACACTTCGAGTTTTTAGTTGAATTGTTTTGTGGATGCCAACAAAAATACAAGGATCATGTCTA
259 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * * *
21568649 CCAAGCTTGGGGCTAAAATTCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTG
324 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTA
* * * * *
21568714 AAAATCGTGAAAAATGGAAAATGAGTCGTCTGGCCATGAAACTTCACGTGAAAGCTTAGGGGACC
389 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
21568779 ATTGTATGAA-TTACAAGCCGTAAAAATGGCATTGGCATCCAGAAATATGAAGATGTGCCTAAAC
454 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * *
21568843 CCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTCTTTGGCCGACGTAGTGCCCGCC
519 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
21568908 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTACCC-GCCTAAGATTAG
584 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCAG
* * * * * *
21568972 ACCGGACCGAGGGTTGTGGTAGCAAGATCGGCAGCACGTAGAGGGGGACCCGACTGATCCCCGGC
648 ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGC
* ** * *
21569037 TTGCGCATCCTACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGCA
713 TTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * *
21569102 TACGAAGTTCATTCCCAGTCTAAGTATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGA
778 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GA-CTGACCGA
**
21569167 GGGTTGCGGCAGCACATG-TGGGCTCGGGCATGTGCTGGTG-CGCATTTTTCTTCACC
841 GGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * *
21569223 GGGGCACCATCG-CCGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCGGG
1 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGG
* * * *
21569287 GGGGCC-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGCACTCGACCCTTATATTGGCCC
66 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* ** *
21569351 CCTATCCCTCATTAAACCTTGAGAACTCACA-CCCCTTAAAGAGCACTTGAGATTTTACAGGTTT
131 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
21569415 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
196 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * *
21569480 ACAGTTCGAGTTTTTAGCTGAAATTTTTTGTGCATGCCAAAAAAAACACAAGGATCATGTCTACC
261 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** *
21569545 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAAAATTAAAAAATCTCAAACCGCAAAAAGTTTTAAA
326 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAA
21569610 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG-CCTA
391 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC-A
* *
21569674 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGAACAT--AGAAAGAAGAAGATGTGCCTAAA
455 TTGTATGAATTTACAAGCCATAAAAATGGCATTGG--CATGCAGAAATATGAAGATGTGCCTAAA
* * * * * *
21569737 CCCACCTACCTCCCTATCAATCCACGGGTTGCGCATCCAGTCTCTCTGGCTGGCATAGT------
518 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * *
21569796 --GCCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCACTCCTAGTCTAAGAT-TG
583 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * *
21569858 AATCGGACTGAGGGTTGTGACAGCAGGATCGGCAGCATGCAGAGGGGGACCCGACCGAGAACCCC
648 -ACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-C-TGATCCCC
* * * * *
21569923 GGCTTGCTCATCCAGCCCCTTTGGCCGGCTGAGCG-CCGTACGCTC-TTTCCGTGGGTTGACTTA
710 GGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT-CGTGGGTTGACTTA
*
21569986 GGCATACGGAGTTGATTCCCAGTCTAAG-AT-C-GA----A---CC-G-----G-TC--C-GA--
774 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACTGACC
* * * *
21570029 TA--GTTGCGGCAGCATATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTC
839 GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* *
21570087 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTAGGGTTCCGGCGATCAGG
1 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGG
*** * * **
21570152 GGATTCAGGGGGGTGTGCGCACATGATGTGCGACGGGCACTGGTACTTGGCCCTTATATTGGCCC
66 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
21570217 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
131 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
21570282 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
196 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
21570347 ACACTTC-AGTTTTCAGCTGAATTTTTTT-TAGCATGCCAATACAAATACAAGGATCACGTCTAC
261 ACACTTCGAGTTTTTAGCTGAATTTTTTTGT-GCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * *
21570410 CAAGTTTAGGGCCAAAACTCCTTCCAAAAAAATTTTTAAAAAATCTCGAACCGTAAAAAATTTCA
325 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTTTAAAAAATCTCGAACCGCAAAAAGTTTTA
*
21570475 AAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
389 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
21570540 ATTGTATGAATTTGCAAGCCCTAAAAATGGTATTGGCATGCAGAAATAAGAAGATGTGCCTAAAC
454 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
*
21570605 CCACCTAGCA-CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT----GCC
519 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * *
21570665 CGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTCCATTCCCAGTCTAAGATCGGA
584 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * * ** *
21570730 CCGGACTGAGGGTTGCAGCAGCAGGATCGGTAGCATGTAGAGGGGGACCTGGTTGATCCCCAGCT
649 CCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCT
* * * * * *
21570795 TACGGATCCCGCCCCTCTGGCCGACTGACCGCTCGCACGCTCGTTTCGTGGGTTGACTTGGGTAT
714 TACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* *
21570860 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACAAGACCAAG
779 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAC-TGACCGAG
* * * **
21570925 GGTTGCAGCAGCACATGCTGGGCTCCGGCATGTGCTGGTGCTGCATTTTTCTTCACC
842 GGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * **
21570982 GGGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGACAGCATT-GGGTTCCAACGATC-GG
1 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGG
*
21571045 GGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CC
66 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
**
21571109 CCTATCCCTCATCAAACCTCAAGAACAAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
131 CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
21571174 GCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTAT
196 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
21571239 ACACTTCGACTTTTAAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
261 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* ** * ** *
21571304 AAGTTTGGGGCCAAAAATCCTTTTGAAAAAATTTTAAAAAATCTCAAACCTTAAAAAGTTTCAAA
326 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAA
* *
21571369 AAT-GTGAAAAATAGAAAACGGGTCGTCTTGCCACGAAACTTCACGTGAAGGCTTAAGGGACCAT
391 AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
21571433 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCC
456 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
*
21571498 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCG
521 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
* * *
21571563 CCCG-CCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACC
586 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
* ** * * * * * *
21571627 AGACCGAGGGTTATGGTAGCAGGATCGGCAGCATGCAAAGGGGGACCGGTC-GATCCCCGGCTTG
651 AGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTA
* * *
21571691 CGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATAT
716 CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
21571756 GGAGTTCATTCCCAGTCTAAG-AT-----G----------G-----GATCGA---ACCGAGGGTT
781 GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACTGACCGAGGGTT
* * * ** * *
21571797 ACGGCAGCACATGCTAGGCTCGAGCATGTGCTGGCACCGC-TTTTATCGTC-AC
846 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT-TCTTCGTC
* ** **
21571849 AGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTT-CGGCGATTGG
1 -GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAG
* * * *
21571913 GGGGGTC-AGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTCGCCCTTATATTGG-C
65 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
** *
21571976 CCCTATCCCTCATCAAACCTTGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTT
130 CCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
21572041 TGCTGCCAGTAGCCATCAAAGTGTCTGAAATGGGGACACTTTTTTTAAATGGTCAGAAAATCTTG
195 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
21572106 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
260 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* *
21572171 CAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAA
325 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAA
*
21572236 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCA
390 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *** *
21572301 TTGTATGAATTTACAAGCCCTAAAAATGTCATTGGCACATAGAAATGTGAAGATGTGCCTAAACC
455 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
21572366 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGGCC
520 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
21572431 GCCCG
585 GCCCG
21572436 TTCGTTTCGC
Statistics
Matches: 6786, Mismatches: 745, Indels: 315
0.86 0.09 0.04
Matches are distributed among these distances:
862 15 0.00
863 22 0.00
864 26 0.00
865 54 0.01
866 201 0.03
867 260 0.04
868 428 0.06
869 243 0.04
870 105 0.02
871 4 0.00
872 108 0.02
873 10 0.00
874 27 0.00
875 148 0.02
876 8 0.00
877 10 0.00
878 8 0.00
879 329 0.05
880 142 0.02
881 1 0.00
885 4 0.00
886 7 0.00
887 104 0.02
888 197 0.03
889 157 0.02
890 309 0.05
891 343 0.05
892 216 0.03
893 139 0.02
894 377 0.06
895 454 0.07
896 504 0.07
897 187 0.03
898 538 0.08
899 386 0.06
900 58 0.01
901 134 0.02
902 421 0.06
903 71 0.01
904 31 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (898 bp):
GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCAGG
GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTTAAA
AATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTA
CGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGACTGACCGAGGGTT
GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
Found at i:21566463 original size:26 final size:26
Alignment explanation
Indices: 21566427--21566479 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21566417 GTTGACTTAG
21566427 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21566453 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21566479 G
1 G
21566480 ATAGGATTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21568233 original size:26 final size:26
Alignment explanation
Indices: 21568197--21568252 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
21568187 TGTGTTGACT
21568197 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
21568223 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
21568249 TAAG
1 TAAG
21568253 ATCAGACTGG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.32, C:0.25, G:0.16, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:21570894 original size:26 final size:26
Alignment explanation
Indices: 21570858--21570908 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
21570848 TGACTTGGGT
21570858 ATACGGAGTTCATTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
21570884 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
21570909 ATCAGACAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:21574130 original size:26 final size:26
Alignment explanation
Indices: 21574094--21574146 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21574084 GTTGACTTAG
21574094 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21574120 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21574146 G
1 G
21574147 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21575876 original size:26 final size:26
Alignment explanation
Indices: 21575847--21575899 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21575837 GTTGACTTAG
21575847 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCGA-TCTAA
21575873 GCATACGGAGTTCATTCCCGATCTAA
1 GCATACGGAGTTCATTCCCGATCTAA
21575899 G
1 G
21575900 ATTGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCGATCTAA
Found at i:21578162 original size:26 final size:26
Alignment explanation
Indices: 21578126--21578178 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21578116 GTTGACTTAG
* *
21578126 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTAATTCCCAATCTAA
* *
21578152 GCATACAGAGTTAATTCCTAGTCTAA
1 GCATACAGAGTTAATTCCCAATCTAA
21578178 G
1 G
21578179 ATCGGACCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.23, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAATCTAA
Found at i:21580804 original size:26 final size:26
Alignment explanation
Indices: 21580764--21580819 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
21580754 TGTGTTGATT
*
21580764 TAAGCATACGGAGTTCATACCCAATC
1 TAAGCATACGAAGTTCATACCCAATC
*
21580790 TAAGCATACGAAGTTCATTCCCAATC
1 TAAGCATACGAAGTTCATACCCAATC
21580816 TAAG
1 TAAG
21580820 ATCAGACTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATACCCAATC
Found at i:21581671 original size:26 final size:26
Alignment explanation
Indices: 21581631--21581686 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
21581621 TGTGTTGACT
*
21581631 TAAGCATACGGAGTTCATACCCAATC
1 TAAGCATACGAAGTTCATACCCAATC
*
21581657 TAAGCATACGAAGTTCATTCCCAATC
1 TAAGCATACGAAGTTCATACCCAATC
21581683 TAAG
1 TAAG
21581687 ATCAGACTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.36, C:0.25, G:0.14, T:0.25
Consensus pattern (26 bp):
TAAGCATACGAAGTTCATACCCAATC
Found at i:21584443 original size:876 final size:877
Alignment explanation
Indices: 21577374--21587685 Score: 12331
Period size: 870 Copynumber: 11.7 Consensus size: 877
21577364 GAGCATCGTT
* * * ** *
21577374 GGAGAACCTGATCGACGGCATTGGGGTTCTGACGATTAGGGGGG-TTGGGGGGTGTGTGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGGTGTGCGCACATG
* *
21577438 ATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACC-CTGAGA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-GAGA
* * * *
21577502 ACTCACACCCCCTTGAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAGCCATTAAAGTGTT
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
21577567 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * * *
21577632 TTTTTGTGCGTGCCAAAAAAAATACAAGGATCACGTCTAGCAAGTTTAGGACCAAAACTCCTTCC
259 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* ** * * **
21577697 AAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAATTAGT
324 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* *
21577762 CGTCTTGCCATGAAACTTCACGTGAAGGCGTAAGGGACCATTGTATGAATTTAAAAGCCATAAAA
389 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* ** *
21577827 ATGGCATTGGGAGGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGG
454 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * *
21577892 CTTGCGCATCTCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGGCCGCCCGCCTGCTCATTTCGTCG
519 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCGCCCGTTCGTTTCATCG
* * * * * * *
21577957 GTTAGCTTAGGCATACGGAGTTAATTCCTAGTCTAAGATCAGACCAGACCGGGGGTTGCGGCAGT
583 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
* * * * * * * * *
21578022 AGGATCGGCAACACGCAGAGGGGGACTCGACTGATCCTCGACTTACGCATCTCGCCCTTCTAGCC
648 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * * *
21578087 GGTTGAGTGCCCGCACACTC-ATACGGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTA
713 GGCTGAGCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
*
21578151 AGCATACAGAGTTAATTCCTAGTCTAAGATCGGACCTGATCGAGGGTTGCGGCAGCACATACTGG
777 AG-AT-C--AG--------TA--C-----T-GGA-C----CGAGGGTTGCGGCAGCACATGCTGG
* * * * ** * *
21578216 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACTATCACCGGAGCGTCATC
817 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACC
* *
21578277 GGAGAACCTGACCGATGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGGTGTGCGCAACATT
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGC-ACA-T
* * * * *
21578341 GATGTGCGATGGGTGATGGCACTTGGCCCTTATATTTGCCCCTTATCCCTCATCAAACCTCAAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
21578406 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
129 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
21578471 TGAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCTTGTACACTTCGAGCTTTTAGCTGAATT
194 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
21578536 TTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGAGACCAAAACACC-TTC
259 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
**
21578600 TGAAAAAATTTTAAAAAATCCCGAACCA-AAAAAGGTTTTGAAAATCGTGAAAAATAGAAAACGA
324 -GAAAAAATTTTAAAAAATCCCGAACCATAAAAA-GTTTCAAAAATCGTGAAAAATAGAAAACGA
* * * *
21578664 GTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGAATGAATTTATAAGCCATAA
387 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
* *
21578729 AAATGGCATTGGCACATAGAAATATGAAGCTGTGCCTAAACCCACCTACCACCCTATCGATCCAC
452 AAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* * *
21578794 GGCTTGCGCATGCCGTCTCTCTGGTCGGCATAGT----G--C-CCGCCCG--C--TCGTTTCATC
517 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGTTCGTTTCATC
* *
21578848 GGTTGGCTTAGGCATAC-AGAGTTCATTCCCAATCTAAGATCAAACCAGACTGAGGGTTGCGGCA
582 GGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
* * * *
21578912 GTAGGATCAGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCA-CTCGCCCCTCTGG
646 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
21578976 CGGGCAGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGCCATACGGAGTTGATTCCCAGTCT
711 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * ** *
21579041 AAGAT-AGGACTGGACCGAGGGTTGCGACAACACATTCTGGGCTCAGGCATGTGCTGGTGTCGCA
776 AAGATCAGTACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCA
* * ** *
21579105 TTTTTCTTCTTTGGGGTGCCATCGTCAGAGCATCACC
841 TTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACC
* * * *
21579142 GGAGAACCTGACAGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-AGGGGGTGTGCGCACATGA
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
* * ** * * *
21579206 TGTGCAATGGGTGCTGGTACCTGGCTTTTATATTGGTCCCCTATCCCTCATAAAACCTTGAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
21579271 TCACACCCCCTTAAAGAGCATTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
21579336 AAATTGGGACACTTTTTTTAAAATGGTCACAAAATCTTGTACACTTCAAGTTTGTT-GCTGACTT
196 AAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT-TTAGCTGAATT
* * *
21579400 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCTAGTTTGGGGGCAAAACTCCTTCC
259 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
* ** *
21579465 AAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGT
324 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
21579530 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAA
389 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * *
21579595 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTCAATCCACGG
454 ATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
21579660 CTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGTCCGTCCGCCCGCTT-GTTTCATC
519 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCG-TTCGTTTCATC
* * *** *
21579724 TGTTGGCTTAGGCATACTG-AGTTCATTCCCAGTCTAAGTAT-GGATTGGA-TCGTGGGTTGCGG
582 GGTTGGCTTAGGCATAC-GAAGTTCATTCCCAGTCTAAG-ATCAGACCAGACT-GAGGGTTGCGG
* * * * * *
21579786 CAGCTGGATCGACAGCATGCAGAGGGGGACCCGACTGATCCCCGACTTACGCA-CCCGCCCCTCT
644 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * *
21579850 GGCCGACTGAGCACCCGCACGCTCGTTTTGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGT
709 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
*** * * * ** *
21579915 CTAAGATCAG-ACCAAATCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTCCTGGCACCA
774 CTAAGATCAGTACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCG
* *
21579979 CATTTTTCTTCATCGGGGCACCATTGTCGGAGCATCATC
839 CATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACC
* *
21580018 GGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGCGGGTGTGCGCACA
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGG-GGGTGTGCGCACA
* * *
21580083 TGATGTGTGATGGGTGATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
63 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG
*
21580148 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGT
128 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * **
21580213 CTAAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCGAGTTTTTAATTGAAT
193 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * *
21580278 TTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
258 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* * * *
21580343 CAAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAACAATCGTGAAAAATAGAAAACGAG
323 CGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
*
21580408 TCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAA
388 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
** * *
21580473 AATGGCATTGGCATGCAGAAATATGAAGAT-TGCCTAAACTCACCTACCACCCTATCGATCCATG
453 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * *
21580537 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG---TCCGCCCGTCCGCTCGTTTCATCG
518 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGTTCGTTTCATCG
* * * *
21580599 GTTGGCTTAGGCTTAC-AGAGTTCATTCCCAGTCTAAGATCTGACTC-GACTGAGGGTTGCAGTA
583 GTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGAC-CAGACTGAGGGTTGCGGCA
* * ** *
21580662 GTAGGAAT-GGCAGCACCCAGAGGGGGACCCGGTCGATCCCCGGCTTACGCATCCCG-CCCTCTG
646 GCAGG-ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * * * *
21580725 GCCGGTTGAGCACCCGCACACTCGTTTCGTGTGTTGATTTAAGCATACGGAGTTCATACCCAATC
710 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* * * * ** * *
21580790 TAAGCATACGAAGTTCAT--TCCCA---AT-C-TAAG-ATCA-GACTGGAC-TGAGG-GT-TGC-
775 TAAG-AT-C--AGTAC-TGGACCGAGGGTTGCGGCAGCA-CATG-CTGGGCTTG-GGCATGTGCT
* * ** * ** * * * * *
21580842 -G-ACAGCA-CATGCTGGGATCGGAGCATCATCATCGGAGCATCGCT
832 GGTGCCGCATTTTTCT-TCATCGGGGCACCATCGTCGGAGCATCACC
* ** * * * * *
21580886 GGAGAACCTGACTGGTGGCATT-GGGTTTCTATGATCGGGGGGTCGGGGGGCGGTGTACGCACAT
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGG-GGTGTGCGCACAT
* * *
21580950 GATGTGCAATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTACCCCTCATCAAACCTCGAGA
64 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-
* *
21581015 AACTCACACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTAT
128 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* *
21581080 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAAT
193 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
21581145 TGTTTTGTGCATGCCAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACTCCTTC
258 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTT
* ** * * * *
21581209 CGAAAAAATTTAAAAAAATCTTGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATGGAAAATGAG
323 CGAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
* * **
21581274 TCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAGGGACCATGGTATGAATTTACAAGCCGCAAA
388 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
21581339 AATGGCACTGGCATC-CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
453 AATGGCATTGGCA-CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
21581403 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCTCGTCCG--C--TCGTTTCAT
517 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CGCCCGCCCGTTCGTTTCAT
* * * *
21581464 CGGTTGGCTTAGGCTTAC-AGAGTTCATTCCCAGTCTAAGATCTGACTC-GACCGAGGGTTGCAG
581 CGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGAC-CAGACTGAGGGTTGCGG
* * * * *
21581527 TAGTAGGATTGGCAGCACCCAGAGGGGGACCCGACCGATCCCCGGCTTACGCATCCCG-CCCTCT
644 CAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* * * * * * *
21581591 GGCCGGTTGAGCACCCGCACACTCGTTTCGTGTGTTGACTTAAGCATACGGAGTTCATACCCAAT
709 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
* * * * ** * *
21581656 CTAAGCATACGAAGTTCAT--TCCCA---AT-C-TAAG-ATCA-GACTGGAC-TGAGG-GT-TGC
774 CTAAG-AT-C--AGTAC-TGGACCGAGGGTTGCGGCAGCA-CATG-CTGGGCTTG-GGCATGTGC
* * ** * ** * * * * *
21581709 --G-ACAGCA-CATGCTGGGATCGGAGCATCATCATCGGAGCATCGCT
831 TGGTGCCGCATTTTTCT-TCATCGGGGCACCATCGTCGGAGCATCACC
** * * * * *
21581753 GGAGAACCTGACTAACGACATT-GGGTTTCTATGATCGGGGGGCCGGGGGGGTGTGCACACATGA
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
* *
21581817 TGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAAC
66 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
** * *
21581881 AAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTATAGTGTTTG
131 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * *
21581946 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGACTTTTAAGCTGAATTTT
196 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
21582011 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGCCCAAAACTCCTTTCAA
261 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
*
21582076 AAAAATTTTAAAAAATCCCGAA-CAGTAAAAAGTTTCAAAAATCCTGAAAAATAGAAAACGAGTC
326 AAAAATTTTAAAAAATCCCGAACCA-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
21582140 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTCACAAGCCATAAAAA
390 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*
21582205 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
455 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
21582270 TTGCGCATCCCGTCTCTCTGGCTGGCGTAGT----G--C-CCGCCCGCCCGTTCGTCTC-GCTGG
520 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGTTCGTTTCATC-GG
* * * * * *
21582327 ATGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTGCGACCGCC
584 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAG-C
** * * * **
21582392 A-GATCGATAGCACTCAGAGGGGGAACC-AGTCGATCCTTGGCTTGCGCATCCCGCCCCTCTGGC
648 AGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
21582455 CGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTA
712 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * *
21582520 AGATC-GAACCGGGCCAAGGGTTGCGACAACACATGCTGGGCTCGGGCATGTGCTGGT-CTTGCA
777 AGATCAGTACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGC-CGCA
*
21582583 TTTTTCTTCACCGGGGCACCATCG-CTGGAGCATCACC
841 TTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCACC
*
21582620 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGGCGTGCGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATG
*
21582685 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
21582750 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCAAAGTGTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
21582815 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
21582880 TTTTATCCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCGTTCG
260 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* ** *
21582945 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAATC
325 AAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
21583010 GTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
390 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
21583075 TGTCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
455 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
21583140 TTGCGCATCCCGTCTCTCTGGCTGGCGTAGT----G--C-CCGCCCGCCCGTTCATTTC-GCTGG
520 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGTTCGTTTCATC-GG
* * *
21583197 ATGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGA-TCGAGGGTTGCGACAGC
584 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAG-
** * * *
21583261 CA-GATCGATAGCACTCAGAGGGGGAACC-AGCCGATCCCTGGCTTGCGCATCCCGCCCCTCTGG
647 CAGGATCGGCAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
21583324 CCGACTGAGCGCCCGCACGCTCTTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
711 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * * * *
21583389 AAGATC-GAACCGGGCCAAGGATTGCGGCAACACATGCTGGGCTCGGGCATGTGCTCGT-CCTGC
776 AAGATCAGTACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCC-GC
*
21583452 ATTTTTCTTCACCGGGGCACCATCG-CTGGAGCATCACC
840 ATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCACC
**
21583490 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCCGGGGGGGCATGCGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGGTGTGCGCACATG
*
21583555 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
** * *
21583620 CAAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCC
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
21583685 GAAATGGGGATACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
*
21583750 TTTTGTGCATGCC-A-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCCTTTCG
260 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
** * * *
21583813 AAAAAATTTTAAAAAATTTCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGACTC
325 AAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* *
21583878 GTCTTGCCGTGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAA
390 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
*** * *
21583943 TGGCATTGGCATGTAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATAGATCCACGGC
455 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
21584008 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGGCCGCCCGCCCGTTCGTTTCATCGG
520 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCGCCCGTTCGTTTCATCGG
* * * * *
21584073 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGTAGCG
584 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCA
* * * * *
21584138 GGATCGGTAGCACGCAGAGGGGGACCAGATCGATCCCCGGCTTGCGCATCCCGCCCCTTTGGTCG
649 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * ** *
21584203 GCTGAGCGCCCTCACGCTCATTTCGTGGGTTGACTTAGTTATACGAAGTTCATTCCCAGTCTAAG
714 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * *
21584268 ATCAG-ACTGGACTGAGGGTTACGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTTCCGCATTT
779 ATCAGTACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTT
* ***
21584332 TTCTTCATCGGGGCACCATCGCCGGAGCATCGTT
844 TTCTTCATCGGGGCACCATCGTCGGAGCATCACC
* * * * **
21584366 GGAGAACCTGACTGGCGGTATTGGGGTTCCGGCGATTAGGGGGCCGGGGGTGGTGTGCGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGG-GGTGTGCGCACATG
*
21584431 ATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
21584496 CTCACACCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
21584561 CAAATGGGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAATTTTTAGCCGAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * *
21584626 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCT
260 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
** ** ** * * *
21584691 AAAAAATTTTAAAAAATCATGAACC-GGAAAAGTTTTGAAAAGCTTGAAAAATGGAAAACGAGTC
325 AAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
21584755 GTCTTGCCATGAAGCTTCACATGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
390 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
21584820 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACACACCTACCACCCAATCGATCCACGGC
455 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
21584885 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCAGTCCGTTTGTTT-AGTCG
520 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCGCCCGTTCGTTTCA-TCG
* * ** * *
21584949 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGC
583 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGC
* * * * *
21585014 AAGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGTC
648 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
21585079 GGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAA
713 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
21585144 GCATACAGAGTTCATTCCCAGTCTCAGATCGGACCAGACCGAGGGTTGTGGCCGCACATGCTAGG
778 G-AT-C--AG-----T---A----C---T--G----GACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * **
21585209 CTTGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGTCACCATCGTCAGAGCATCGTC
818 CTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACC
* * **
21585269 GGAGAACCTGACCGACAGCATTGGGGTTTCGGTGATCGGGGGGGCC-GGGGGGTGTGCGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATG
*
21585333 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
21585398 CTCACACCCCCTTAAAAAGCATTTGAGATTTTACATGTTTGCTGCCAATAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
21585463 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCCAGTTTTTAGCTGAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
*
21585528 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACT-CTTTCG
260 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-
* * * * * **
21585592 GAAAAAATTTTAAAAAATCTCAAAGCACAAATAGTTTCAAAAATTTTGAAAAATAGAAAAC-ATG
324 GAAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA-G
* *
21585656 TCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAA
388 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
21585721 AATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACA
453 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * *
21585786 GCTTGTGCATCCCGTCTCTCTGGCTGGCGTAGCGCCTGCCCACCCGCCTGCCCCGCTCGTTTCAT
518 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCG-CCCGTTCGTTTCAT
** * * * * ** **
21585851 CGGTTGGCTTAGGCATGTGGAGTTCATTCCCAATCTAAGATCGGATCAGACCCAGGGTTATGGCA
581 CGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
* * * * * * *
21585916 GTAGGATTGGCAGAACACAGAGGGGGACCCGACCGATCCACAGCTTGCACATCCCGCCCCTCTGG
646 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
21585981 CCGGTTGAGCACCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCTAGTCT
711 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
*
21586046 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTG
776 AAG-AT-C--AG-----T---A--C-----T------GGACCGAGGGTTGCGGCAGCACATGCTG
* * * * * *
21586111 GGCTCGAGCATGTGCTGGTGCTGGATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCACC
816 GGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCACC
* * * *
21586173 AGAGAACCTGACCGACGGCATTGGGATTCCTACGATCGGGGGTGCCGGGGGGGTGTACGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGG-GCCGGGGGGGTGTGCGCACATG
* * * *
21586238 ATGTGCGATGGATGCTGGTACTAGGCCCTTATATTGTCCCCGTATCCCTCATCAAACCTCGAGAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
21586303 CTCACACCCCCTTAAAGAGCATTTAAGATTTTACAGATTTGCCGCCAGTAGCCATTAAAGTGTCT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
21586368 AAAATGGGGACACTTTTTTCAAATGGTCAAAAAATCATGTACACTTCGAGTTTTTAGCTAAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * *
21586433 TTTTGTGCACGCCAACAAAAATACAAAGATCACGTCTACAAAGTTTGGGCCCAAAACTCCTTTCA
260 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
*
21586498 AAAAAATTTTAAAAAATCCCGAA-CAGTAAAAAGTTTCAAAAATCCTTGAAAAATAGAAAACGAG
325 AAAAAATTTTAAAAAATCCCGAACCA-TAAAAAGTTTCAAAAAT-CGTGAAAAATAGAAAACGAG
* *
21586562 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTCACAAGCCATAAA
388 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
**
21586627 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-CG
453 AATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * ** ** *
21586691 GCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCTCTTGCCCGCCTACCCGCTT-GTTTCGT
518 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCG-TTCGTTTCAT
* * * * * *
21586755 CTGTTGGCTTAGGCATAC-AGCGTTCATTCCCAATTTAAGGTCAGACCAGACTGAGGTTTGCGGC
581 CGGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGC
* * * * * * *
21586819 AGCAGGATTGGTAGCATGCAGA-GGGCACCCAACCGATCCCCGGCTTGCGCATCTCGCCTCTCTG
645 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
*
21586883 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAACGGAGTTCATTCCCAGTC
710 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
* *
21586948 TAAGATTAG-A-TCGGACCGAGGGTTG-GGACAGCACATGCTGGGCTTTGGCATGTGCTGGTGCC
775 TAAGATCAGTACT-GGACCGAGGGTTGCGG-CAGCACATGCTGGGCTTGGGCATGTGCTGGTGCC
** * * *
21587010 ATATTTTTCTTC-GCTGGGTCACCA---T-----CAT---T
838 GCATTTTTCTTCATC-GGGGCACCATCGTCGGAGCATCACC
* ** * * *
21587039 GGAGAACCTGACTGGTGGCATTGGGGTTGCGGCGATCGGGGGGGCC-GGGGGGTGTACGCACATG
1 GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGGTGTGCGCACATG
* * *
21587103 ATGTGCGAT-GGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATGAAACCTTGAAAA
65 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* * *
21587166 CTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTAT
130 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* * * *
21587231 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTCGCTCAATTT
195 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT
* * * * * *
21587296 TTTTGTGCATGCGAAAAAAAATACAAGGATCATGTCTACCAGGTTTGGGGTCAAAACTCGTTTCG
260 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
* * * * *
21587361 AAAAAATTTTAACAAATCTCGAGCCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTC
325 AAAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * **
21587426 ATCTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAA
390 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
21587491 TGACATTGGCACCCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCAATCGATCCACGGC
455 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * *
21587556 TTGCGCAGT-CCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCTGCCCACTCGCTT-GTTTCATC
520 TTGCGCA-TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCGCCCG-TTCGTTTCATC
** * * * * *
21587619 GACTGGCTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGACCGGACCAGACCGAGGATTGCAGCA
582 GGTTGGCTTAGGCATACGA-AGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCA
21587683 GCA
646 GCA
21587686 CATGCTGGGC
Statistics
Matches: 8324, Mismatches: 912, Indels: 386
0.87 0.09 0.04
Matches are distributed among these distances:
856 7 0.00
857 4 0.00
858 2 0.00
859 4 0.00
860 103 0.01
861 68 0.01
862 147 0.02
863 608 0.07
864 605 0.07
865 207 0.02
866 311 0.04
867 598 0.07
868 326 0.04
869 63 0.01
870 990 0.12
871 9 0.00
872 12 0.00
873 14 0.00
874 176 0.02
875 19 0.00
876 797 0.10
877 461 0.06
878 142 0.02
879 258 0.03
880 144 0.02
881 2 0.00
882 1 0.00
886 2 0.00
890 4 0.00
891 66 0.01
892 108 0.01
894 1 0.00
896 7 0.00
897 1 0.00
898 1 0.00
899 3 0.00
900 1 0.00
901 4 0.00
902 298 0.04
903 446 0.05
904 829 0.10
905 327 0.04
906 145 0.02
907 1 0.00
908 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (877 bp):
GGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGTTCGTTTCATCGGTT
GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGG
ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
CAGTACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTT
CTTCATCGGGGCACCATCGTCGGAGCATCACC
Found at i:21586058 original size:26 final size:26
Alignment explanation
Indices: 21586022--21586074 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21586012 GTTCACTTAG
*
21586022 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21586048 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21586074 G
1 G
21586075 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21586704 original size:905 final size:902
Alignment explanation
Indices: 21584243--21587685 Score: 4451
Period size: 904 Copynumber: 3.9 Consensus size: 902
21584233 TGACTTAGTT
* * * **
21584243 ATACGAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* * * * ***
21584308 TGGGCATGTGCTGGTTCCGCATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGTTGGAGAAC
66 TGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
* * * ** * *
21584373 CTGACTGGCGGTATTGGGGTTCCGGCGAT-TAGGGGGCCGGGGGTGGTGTGCGCACATGATGTGT
131 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGG-GGTGTACGCACATGATGTGC
21584437 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
21584502 CCACCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTCAAATG
259 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
21584567 GGGACACTTTTTTCAAATGGTCGCAAAATCTTGTACACTTCGAATTTTTAGCCGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
21584632 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTACTTCCTAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAA
* * ** * *
21584697 TTTTAAAAAATCAT-GAACCG-GAAAAGTTTTGAAAAGCTTGAAAAATGGAAAACGAGTCGTCTT
454 TTTTAAAAAATC-TCGAACAGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
* * * *
21584760 GCCATGAAGCTTCACATGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCA
*
21584825 TTGGCACACAGAAATATGAAGATGTGCCTAAACACACCTACCACCCAATCGATCCACGGCTTGCG
583 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCG
* * * * *
21584890 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCTCCCGCCAG-TCCGTTTGTTT-AGTCGGTTG
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCTGCCCCGCTTGTTTCA-TCGGTTG
* * * ** * *
21584953 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCAGCAAGA
712 GCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * *
21585018 TCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCTTCTGGTCGGCT
777 TTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* *
21585083 GAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGTATACGGAGTTCATTCCCAGTCTAAGC
842 GAGCGCCCGCACGCTCGTTTCGTGGGTT-ACTTAGG-ATACGGAGTTCATTCCTAGTCTAAGC
* * * * * *
21585146 ATACAGAGTTCATTCCCAGTCTCAGATCGGACCAGACCGAGGGTTGTGGCCGCACATGCTAGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* * **
21585211 TGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGTCACCATCGTCAGAGCATCGTCGGAGAAC
66 TGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
* * * *
21585276 CTGACCGACAGCATTGGGGTTTCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
131 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGA
*
21585341 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
21585406 CCCTTAAAAAGCATTTGAGATTTTACATGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGG
261 CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
21585471 GACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTTCCAGTTTTTAGCTGAATTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
21585536 ATGCCAACAAAAATACAAGGATCACGTCAACCAAGTTTGGGGCCAAAACT-CTTTCGGAAAAAAT
391 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAAT
* *
21585600 TTTAAAAAATCTC-AA-AGCACAAATAGTTTCAAAAATTTTGAAAAATAGAAAAC-ATGTCGTCT
455 TTTAAAAAATCTCGAACAGTA-AAA-AGTTTCAAAAATCTTGAAAAATAGAAAACGA-GTCGTCT
*
21585662 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGC
* * * * *
21585727 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCACAGCTTGT
582 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGC
* * * * *
21585792 GCATCCCGTCTCTCTGGCTGGCGTAGCGCCTGCCCACCCGCCTGCCCCGCTCGTTTCATCGGTTG
647 GCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCTGCCCCGCTTGTTTCATCGGTTG
*** * * * ** *
21585857 GCTTAGGCATGTGGAGTTCATTCCCAATCTAAGATCGGATCAGACCCAGGGTTATGGCAGTAGGA
712 GCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGA
* * * * * *
21585922 TTGGCAGAACACAGAGGGGGACCCGACCGATCCACAGCTTGCACATCCCGCCCCTCTGGCCGGTT
777 TTGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
*
21585987 GAGCACCCGCACGCTCGTTTCGTGGGTTCACTTAGGCATACGGAGTTCATTCCTAGTCTAAGC
842 GAGCGCCCGCACGCTCGTTTCGTGGGTT-ACTTAGG-ATACGGAGTTCATTCCTAGTCTAAGC
21586050 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
* * * * *
21586115 CGAGCATGTGCTGGTGCTGGATTTTTCTTCGTCGGGGCACCATCGTTGGAGCATCACCAGAGAAC
66 TGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
* ** *
21586180 CTGACCGACGGCATTGGGATTCCTACGATCGGGGGTGCCGGGGGGGTGTACGCACATGATGTGCG
131 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTACGCACATGATGTGCG
* * * *
21586245 ATGGATGCTGGTACTAGGCCCTTATATTGTCCCCGTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
21586310 CCCCTTAAAGAGCATTTAAGATTTTACAGATTTGCCGCCAGTAGCCATTAAAGTGTCTAAAATGG
260 CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * *
21586375 GGACACTTTTTTCAAATGGTCAAAAAATCATGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * *
21586440 CACGCCAACAAAAATACAAAGATCACGTCTACAAAGTTTGGGCCCAAAACTCCTTTCAAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAT
*
21586505 TTTAAAAAATCCCGAACAGTAAAAAGTTTCAAAAATCCTTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAAT-CTTGAAAAATAGAAAACGAGTCGTCTTG
*
21586570 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTCACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCAT
** *
21586635 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-CGGCTTGCGC
584 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGC
* * ** * * *
21586699 ATCCCGTCTCTCTGGCCGGCATAGTGCCCT-CTTGCCCGCCT-ACCCGCTTGTTTCGTCTGTTGG
649 ATCCCGTCTCTCTGGCCGACGTAGTG-CCTGCCCGCCCGCCTGCCCCGCTTGTTTCATCGGTTGG
* * * * *
21586762 CTTAGGCATACAGCGTTCATTCCCAATTTAAGGTCAGACCAGACTGAGGTTTGCGGCAGCAGGAT
713 CTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGAT
* * * * * *
21586827 TGGTAGCATGCAGA-GGGCACCCAACCGATCCCCGGCTTGCGCATCTCGCCTCTCTGGCCGGCTG
778 TGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
21586891 AGCGCCCGCACGCTCGTTTCGTGGG-----T----T---GA---C--T--TAG-----GC
843 AGCGCCCGCACGCTCGTTTCGTGGGTTACTTAGGATACGGAGTTCATTCCTAGTCTAAGC
* * *
21586927 AAACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTG-GGACAGCACATGCTGGGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGG-CAGCACATGCTGGGC
** * *
21586991 TTTG-GCATGTGCTGGTGCCATATTTTTCTTCG-CTGGGTCACCA---T-----CAT---TGGAG
65 -TTGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCACCGGAG
* ** *
21587043 AACCTGACTGGTGGCATTGGGGTTGCGGCGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTG
128 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTG
* * *
21587108 CGAT-GGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATGAAACCTTGAAAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
21587171 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTATGAAAT
258 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
21587236 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTCGCTCAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * *
21587301 TGCATGCGAAAAAAAATACAAGGATCATGTCTACCAGGTTTGGGGTCAAAACTCGTTTCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * * * *
21587366 ATTTTAACAAATCTCGAGCCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCTT
453 ATTTTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTT
* ** * *
21587431 GCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGACA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCA
* *
21587496 TTGGCACCCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCG
583 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCG
* * * * **
21587561 CAGT-CCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCTGCC--CACTCGCTTGTTTCATCGACT
648 CA-TCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCTGC-CCCGCTTGTTTCATCGGTT
* * * * *
21587623 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCGGACCAGACCGAGGATTGCAGCAGCA
711 GGCTTAGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
21587686 CATGCTGGGC
Statistics
Matches: 2238, Mismatches: 279, Indels: 86
0.86 0.11 0.03
Matches are distributed among these distances:
862 137 0.06
863 338 0.15
864 25 0.01
865 27 0.01
866 37 0.02
869 3 0.00
874 1 0.00
876 3 0.00
877 93 0.04
878 2 0.00
882 3 0.00
884 1 0.00
886 1 0.00
889 2 0.00
892 1 0.00
897 1 0.00
900 1 0.00
901 7 0.00
902 275 0.12
903 393 0.18
904 411 0.18
905 319 0.14
906 153 0.07
907 4 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (902 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCT
TGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATT
TTAAAAAATCTCGAACAGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCTGCCCGCCCGCCTGCCCCGCTTGTTTCATCGGTTGGCTT
AGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATTGG
CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTACTTAGGATACGGAGTTCATTCCTAGTCTAAGC
Found at i:21587963 original size:718 final size:701
Alignment explanation
Indices: 21586920--21588396 Score: 2104
Period size: 718 Copynumber: 2.1 Consensus size: 701
21586910 CGTGGGTTGA
* * * *
21586920 CTTAGGCAAACGGAGTTCATTCCCAGTCTAAGATTAGATCGGACCGAGGGTTG-GGACAGCACAT
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAG-CAGCACAT
* * * * *
21586984 GCTGGGCTTTGGCATGTGCTGGTGCCATATTTTTCTTCGCTGGGTCACCATCATTGGAGAACCTG
65 GCTGGGCTTCGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCATTAGAGAACCTG
* * * * *
21587049 ACTGGTGGCATTGGGGTTGCGGCGATCGGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGG
130 ACTGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTACGCACATGATGTGCAATGG
*
21587114 TGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATGAAACCTTGAAAACTCACACCCCCTT
195 TGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATGAAACCTTCAAAACTCACACCCCCTT
21587179 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTATGAAATGGGGACAC
260 AAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTATGAAATGGGGACAC
* * *
21587244 TTTTTTCAAATGGTCACAAAATCTTGTACATTTTGAGTTTTTCGCTCAAT-TTTTTTGTGCATGC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT-AATGTTTTTTGTGCATGC
* * * ** *
21587308 GAAAAAAAATACAAGGATCATGTCTACCAGGTTTGGGGTCAAAACTCGTTTCGAAAAAATTTTAA
389 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAA
* * * *
21587373 CAAATCTCGAGCCGTAAAAAGTTTCCAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
454 AAAATCCCGAACCGTAAAAAGTTTCCAAAAACGTGAAAAATAGAAAACGAGTCATCTTGCCATGA
*
21587438 AACTTCACGTGAATGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGACATTGGCAC
519 AACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGACATTGGCAC
21587503 CCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCAGT-CC
584 CCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCA-TCCC
* * *
21587567 GTCTCTCTGGCCGATGTAGTGCCCGCCCGCCTGCCCACTCGCTTGTTTCATCGACTGG
648 GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCA---GCTCGTTTCATCGACTGG
* * * * *
21587625 CTTAGGCATACAGAGTTCATTCCCAGTCTAAGACCGGACCAGACCGAGGATTGCAGCAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATG
21587690 CTGGGC-TCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGT
66 CTGGGCTTCG-GCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCA---T-----CAT--T
* * **
21587754 CAGAGAACCTGA-TCGGCGGCATTGGGGTTCCGATGATCGAGGGGGCCGAGGGGGTGTGCGTGCA
120 -AGAGAACCTGACT-GGCGGCATTGGGGTTCCGACGATCGAGGGGGCCG-GGGGGTGTACGCACA
21587818 TGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCAT-AAACC-TCAA
182 TGATGTGCAAT-GGTGCTGGTACTTGGCCCTTATATTGGCC-CCTATCCCTCATGAAACCTTCAA
** *
21587881 GAACTCACACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
245 -AACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCG
* * * *
21587946 TCTGAAATGGGGACACTTTTTTTAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGAT
309 TATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAT
* *
21588011 GTTTTTTGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTT
374 GTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTT
* *
21588076 TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAATTTTCCAAAAACGTGAAAAATAGAAAATGA
439 TCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCCAAAAACGTGAAAAATAGAAAACGA
* **
21588141 GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
504 GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAA
* ** * *
21588206 AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
569 AAATGACATTGGCACCCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCAATCGATCCAC
* * **
21588271 GGCTTGCGCATCCCGTTTCTCTGGCCGACGTAGTGCCCGCTCGCCCGCCAGCTCGTTTCATCGGT
634 GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCAGCTCGTTTCATCGAC
21588336 TGG
699 TGG
*
21588339 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGCA
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCA
21588397 ACAAGATCGG
Statistics
Matches: 682, Mismatches: 70, Indels: 31
0.87 0.09 0.04
Matches are distributed among these distances:
704 2 0.00
705 96 0.14
706 1 0.00
708 1 0.00
713 3 0.00
714 67 0.10
715 2 0.00
716 39 0.06
717 31 0.05
718 428 0.63
719 12 0.02
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (701 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATG
CTGGGCTTCGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCATTAGAGAACCTGA
CTGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTACGCACATGATGTGCAATGGT
GCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATGAAACCTTCAAAACTCACACCCCCTTA
AAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGCGTATGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAATGTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAAAAATTTTAAAA
AATCCCGAACCGTAAAAAGTTTCCAAAAACGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAATGACATTGGCACCC
AGAAATATGAAGATGTACCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCAGCTCGTTTCATCGACTGG
Found at i:21588542 original size:26 final size:26
Alignment explanation
Indices: 21588503--21588555 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21588493 GTTGACTTAG
* * * *
21588503 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCACTCACAGTCTAA
21588529 GCATACAGAGTTCACTCACAGTCTAA
1 GCATACAGAGTTCACTCACAGTCTAA
21588555 G
1 G
21588556 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCACTCACAGTCTAA
Found at i:21591775 original size:877 final size:877
Alignment explanation
Indices: 21587625--21607042 Score: 17446
Period size: 877 Copynumber: 21.9 Consensus size: 877
21587615 CATCGACTGG
* * * *
21587625 CTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGACCGGACCAGACCGAGGATTGCAGCAGCACAT
1 CTTAGGCATACGA-AATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT
* * *
21587689 GCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGT
65 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGT
* * * ** * **
21587754 CAGAGAACCTGATCGGCGGCATTGGGGTTCCGATGATCGAGGGGGCCGAGGGGGTGTGCGTGCAT
130 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCCGGGGGGGTGTGCGCACAT
* * *
21587819 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCAT-AAACCTCAAGA
194 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
21587883 ACTCACACCCCCTTAAAGCGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
21587948 TGAAATGGGGACACTTTTTTTAAATGGTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATG
324 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-
* * *
21588012 TTTTTTGTGCATGCCAACAAAAATTCAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTT
388 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* *
21588077 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAA-TTTTCCAAAAA-CGTGAAAAATAGAAAATG
453 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTT--AAAAATCATGAAAAATAGAAAACG
21588140 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
516 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
21588205 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
581 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
* * * * *
21588270 CGGCTTGCGCATCCCGTTTCTCTGGCCGACGTAGTGCCCGCTCG--C-CC-GCCAGCTCGTTTCA
646 CGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCG
* *
21588331 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCAGC
711 TCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGC
* * ** * * * * * *
21588396 AACAAGATCGGCAGCACATAGAGGGGGACCTGGCTGATCCGCGGCTTGCGCATCCCGCCCCTCTG
776 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTG
* * * *
21588461 GCCGGCTGAGCGTCCG-TACGCTAGTTTCATTGGTTGA
841 GCCGGCTGAGCGCCCGCT-CGCTCGTTTCGTGGGTTGA
* *
21588498 CTTAGGCATACGGATTTCATTCCCAGTCTAAGCATACAGAGTTCACTCACAGTCTAAGATCGGAC
1 CTTAGGCATACGAAATTCATTCCCAGTCTAAG-AT-C-G-G-------AC---C----A---GA-
* * * * *
21588563 CGAATCGAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTACCGAATTTTTCTTCGC
44 C----CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * * * *
21588628 CGAGGCACCA---TC----C--C--CAGAGAACTTGACCGACGACATTGGGGTTCCGGAGATCGG
105 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
* *
21588682 GGGGCCGGGGAGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACCTGGCCCTTATATTGGCC
170 GGGGCCGGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * * * *
21588747 CTCTGTCCCTCATCAAACCTTGAGAACTCAAACCCCCTTGAAGAGCATTTGAGATTTTACAGGTT
234 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
** * * * *
21588812 TGCTGCCAGTAGCCATTAAAGTGTCCAAAATTGGGACACTTTTTTCAATTGGTTACAAAATCTTC
299 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
21588877 TACACTTCGAGTTTTTAACTGAATTTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTAC
364 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * * * * *
21588942 CAAGTTTGGGGTCAAAAATCCTTCCAAAAAAATTTCAAAAAATCCCGAACCGCAAAAAGCTTTGA
429 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAA
* * *
21589007 AAATCATGAAAAATGGAAAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGGTTAAGGGACCA
494 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *** *
21589072 TTGTATGAATTTACAAGCCATAAAAATAGCATTGGCACATAGAAAGATGAAGATGTGCCTAAACC
559 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
21589137 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-TCG---
624 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * *
21589198 GCCCGCCTGCCCGCTCATTTCATCAGTTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
689 GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * **
21589263 AGAATGGACCT-AGGGTTGCGGTAGCAAGATTGGCAGCACGCAGAGGGGGACCCGCCCGATCGTC
754 AGACTGGA-CTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * * * * * * * *
21589327 GGCTTGTGCATCCCTCCCCTCTGGTCGACTGAGCACCCGCACACTCGTTTCATGAGTTGA
818 GACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
* * * * * *
21589387 CTTAGGCATAC-AGAGTTCATTACCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCGGCACAT
1 CTTAGGCATACGA-AATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT
* ** * * ** * **
21589451 GCTGGTCTCAAGCATGTGCTGGTGCTGTATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCAC
65 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGT
* * * * *
21589516 CGGAGAACCCGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGC-TGGGGGTGTGCGCAAATG
130 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATG
*
21589580 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCTCC-ATCCCTCATCAAACCTCAAGA
195 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CCTATCCCTCATCAAACCTCGAGA
*
21589644 ACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
** * * * * *
21589709 CAAAATTGGGACACTTTTTTCAATTGGTTACAAAATCTTCTACACTTCGAGTTTTTAACTGAATT
324 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
21589774 TTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAAATCCTTCC
389 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * * *
21589839 AAAAAAATTTCAAAAAATCCCGAACCGCAAAAAGCTTTGAAAATCATGAAAAATGGAAAACGAGT
454 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
* * *
21589904 CGTGTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCAGTGTATGAATTTACAAGCCATAAAA
519 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *** * **
21589969 ATAGCATTGGCACATAGAAAGATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTA
584 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
21590034 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCG---GCCCGCCTGCCCGCTCATTTCGTCA
649 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCG
* * * *
21590095 GTTTGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGAATGGACCT-AGGGTTGCGGTAG
714 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-CTGAGGGTTGCGGCAG
* * * ** * * * *
21590159 CAAGATTGGCAGCACGCAGAGGGGGACCCGCCCGATCGTCAACTTGTGCATCCCTCCCCTCTGGT
778 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGC
* * *
21590224 CGACTGAGCACCCG-TACGCTCGTTTCGTGAGTTGA
843 CGGCTGAGCGCCCGCT-CGCTCGTTTCGTGGGTTGA
* * * * *
21590259 CTTAGGCATAC-AGAGTTCATTACCAGTCTAAGATCAGACCGGATCGAGGGTTGCGGCAGCACAT
1 CTTAGGCATACGA-AATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT
* ** ** * **
21590323 GCTGGTCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCACCGAGGCACCATCGTCGGAGCATCAC
65 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGT
* * * * * *
21590388 CGGAGAACCCGACAGACGACATTGGGGTTCCGACGATCGGGAGG-C-TGGGGGTGTGCGCACATG
130 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATG
*
21590451 ATGTGCGATGGGTGCTGGTACTTGGGCCCTTATATTGGCCCTCC-ATCCCTCATCAAACCTCAAG
195 ATGTGCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCC-CCTATCCCTCATCAAACCTCGAG
*
21590515 AACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
258 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
** * * * * *
21590580 CCAAAATTGGGACACTTTTTTCAATTGGTTACAAAATCTTCTACACTTCGAGTTTTTAACTGAAT
323 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
* * * *
21590645 TTTTTTATGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAAATCCTTC
388 TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC
* * * * * *
21590710 CAAAAAAATTTCAAAAAATCCCGAACCGCAAAAAGCTTTGAAAATCATGAAAAATGGAAAACGAG
453 CGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
* * *
21590775 TCGTGTTGCCATGAAACTTCACGTGAAGGGTTAAGGGACCAGTGTATGAATTTACAAGCCATAAA
518 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *** *
21590840 AATAGCATTGGCACATAGAAAGATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
583 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * * * *
21590905 GCTTGCGCATCCCGTCACTCTGGTCGGTGTAGTGCCTGCCCGCCTGCCTGCCCGTTCATTTTGTC
648 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTC
* * * *
21590970 GGTTAGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGTGGCAG
713 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAG
* * * * * *
21591035 TAGGATCGGCAGCACACAGGGGGGGACCCGATCGATCCCCGACTTGCGCATTCCACCCCTCTAGC
778 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGC
* * * *
21591100 CGGCTGAGCACCCGCTCGGTCATTTCGTGCGTTGA
843 CGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
* * * *
21591135 CTTAGGCATCCGAAATTCATTCCCAGACTAAGATCGGACCAGACCGAGGGTTGTGGTAGCACATG
1 CTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * *
21591200 CTGGGCTCGGCCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGTCACCATCGCCGGAGCATCGTC
66 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* * *
21591265 GGAGACCCTGACCGACGGCTTTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCACACATGA
131 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
* *
21591330 TGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAG
196 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
21591395 TCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTG
261 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
21591460 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCGAGTTTTTAGCTGAATTTT
326 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *** *
21591525 TTTGTGCATGCCAAAAAAAATACAAGGATCATGTATACCAAGTTTGGAATCAAAACTCCTTCCAA
391 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * *
21591590 AAAAAGTTTAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCG
456 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
21591655 TCTTGCCATTAAACTTAACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAAT
521 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
21591720 GGCATTGGCATGTAGAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
586 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
21591785 TGCGCATCCCGTCACTCTGGCCGGTGTAGTGCCTGCCCGCCTGCCTGCCCGTTCATTTTGTCGGT
651 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGT
* * * * *
21591850 TAGCTTAGGCATATGGAGTTCATTCCCAATCTAAGATCAGACTGGACTGAGGGTTGTGGCAGTAG
716 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAG
* * * * *
21591915 GATCGGCAGCACACAGGGGGGGACCCGATCGATCCCCGACTTGCGCATTCCACCCCTCTAGCCGG
781 GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGG
* * * *
21591980 CTGAGCACCCGCTCGGTCATTTCGTGCGTTGA
846 CTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
* *
21592012 CTTAGGCATACGAAATTCATTCCCAGACTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATG
1 CTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * * *
21592077 CTAGGCTCGGCCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGTCACCATCGTCGGAGCATCGTC
66 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* * * *
21592142 GGAGACCCTGACCGACGGCTTTGGGGTTCCGGTGATCGGGGGGCCGGGGGGGTGTGCACACATGA
131 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
*
21592207 TGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
196 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
*
21592272 TCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
261 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
21592337 AAATTGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTT
326 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * * * * * *
21592402 TCTGTGCAAGCCAATAAAAATACTAGGATCACTTCTGCAAATTTTGGGGCCAAAAATCCTTTC-A
391 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * ** * *
21592466 AAAATATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAATA
456 AAAA-ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTC
* *
21592531 TTCTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
520 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** ** * *
21592596 TGGCATTGGCACACAGAAATATGAAGATGTTTCTAAACCCACCTACCATCCTATCGATCCAGGGC
585 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * *
21592661 TTACGCATCGCGTCTCTCTAGCAGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTTGTTTCGTCGG
650 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGG
** * * ** ** * *
21592726 TCAGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGCGGTAGTA
715 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCA
* * * * ** * **
21592791 GGATCGCCAGTACGCAGAGGGGGACCCGATCGATCCTCGGTTTACGCATCCCACCCCTCTGGTAG
780 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCG
* * *
21592856 GCTGAACGCCCGCACGCTCCTTTCGTGGGTTGA
845 GCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
*
21592889 CTTAGGCATACAGAGGTCATTCCCAGTCTAAGCATAGGAGTTCATTGCCAGTCTAAGATCAGACC
1 CTTAGGCATAC-GA----A-----A-T-T---C-----A-TTC----CCAGTCTAAGATCGGACC
* ** *
21592954 GGACCGAGGGTTGCGGCAGCACATGCTGGTTTCAGGCATGTGCTGGTGCCGCATTTTTC-T--TC
41 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * *
21593016 ---G------C--CGGAGCATTGCCGGAGAACCTGATCGGCGGCATTGGGGTTCCGACGATCGGG
106 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GG
* * *
21593070 GGGGCCGAGGGGGGGTTTACGCACATGATGTGCGACGGGTGCTGGTACTTGGCCCTTATATTGGC
170 GGGGCC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
21593135 CCCCTATCCCTCATCAAACCTCGAGAAGTCACACCCCCTTAAAGAGCATTTGAGATTTTGCAGGT
233 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
21593200 TTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
298 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * * *
21593265 GTACACTTTGGGTTTTTAGCTCAATTTTTTTGTGCATGCCAAAAAAAAAACAAGGATCACATCTA
363 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * *
21593330 CCAAGTTTGGGG-CAAAACTCCTTCCGAAAAAATTTTAAAAAAACCCGAACTGCAAAAAGTTTTG
428 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTA
* *
21593394 AAAATCATGAAAAATAGAAAACGTGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACC
493 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
** * *
21593459 ATTGTATGAATTTACAAGCCATAAAAATGGTGTTGACATGCAGAAATTTGAAGATGTGCCTAAAC
558 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
21593524 CCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGTCCGGCGTAGTGCCCGCC
623 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* * * * * * * *
21593589 AGGCCCGCCCGCCTGCTCATTTCATCGGTTGGCTTTGACATACAGAGTTCATTCCCAGTCTAAGA
688 -CGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
** *** * ** * * * *
21593654 TTGGACCAAACTGAGGGTTGTGGCAGCAGGATCGATAGCACTCAGTGGGGGACCTGGCCGATCCC
752 TCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCC
* *
21593719 CGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG-TACGCTCGTTTCGTTGGTTGA
817 CGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCT-CGCTCGTTTCGTGGGTTGA
* * * * * * *
21593780 CTTAGCCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGTGGTAGCACATG
1 CTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * * * * * **
21593845 CTAGGCTCGGGGATGTGCTGGTGCCGTATTTTTCTTCGTCGAGTCACCATCGTCAGAGCATCACC
66 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* * * *
21593910 AGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGCTGGCCAGGGGGGCTGTGCGCACAT
131 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG-GGGCC-GGGGGGGTGTGCGCACAT
*
21593975 GATGTGCGATGGGTGCTGGTACATGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGA
194 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
21594039 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTT
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
21594104 TGAAATGGGGAAACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT
324 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
21594169 TTTTTGTGCATGCCAAC-AAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTC
389 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * *
21594233 GAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGT
454 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
* *
21594298 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAA
519 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* *
21594363 ATGGCATTGGCATGTAGAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGG
584 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* *
21594428 CTTGTGCATCCCGTCTCTCTGGCCGGCGTA-TG---GCCCG--C-CC-GCCCGCTCTTTTCGTCG
649 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCG
* ** * ** *
21594485 ATTGGCTTCA-GCATACAAAGTTCATTCCCAATCTAAGATCAGACCAGA-TCGAGGGTTGCGGTA
714 GTTGGCTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTTGCGGCA
* * * * * * * *
21594548 GTAGGATCGACAACACGCAGAGGGGGAACTGGCCGATCCTC-AGCTTGCACATCCCACCCCTCTG
777 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCACCCCTCTG
* * * * * **
21594612 GCCAGCTGAGCCCCCGCACGTTCGGTTAATGGGTTGA
841 GCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
21594649 CTTATGCATATGATGTTCATTCCCAGTCTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGAC
1 C---T---TA-G--G--CA-T---A--C---G-A-A---A-TTCATTCCCAGTCTAAGATCGGAC
* * * *
21594714 CAGACCGAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTTGTGCCGCATTTTTCTTCAT
40 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
** * * * * * *
21594779 CGGGGCACCATCACCGAAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTTCGACGATCGG
105 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
* * * *** * *
21594844 GGGG-CTGGGGGGTGTGCGCACAAGATGTGCGGTACATGCTGGTACTTGGCCCTTACATTGGTCC
170 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
21594908 CCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTT
235 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
21594973 GCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGCTCACAAAATATTGT
300 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *
21595038 ACACTTCGCGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACG
365 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * *
21595103 AAGTTTAGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAA
430 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAA
** * *
21595168 AATCATGAAAAATAGAAAACGAGTATTCTTGCCATGAAACTTCATGTGAAGGCTTAAAAGG-CCA
495 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT-AAGGGACCA
* * ** * **
21595232 TTGTATGAATTTACAAGCCATAAAAGTGGCATTTGCACACAGAAATAAGAAGATGTTTCTAAACC
559 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
*
21595297 CACCTACCACCCTATCGATCCAGGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
624 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * *
21595362 G--C-CC-GCCCGTTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
689 GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * **
21595423 AGACCGGACCAAGGGTTGCGACAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCGTCG
754 AGACTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCG
* * * * *
21595488 GCTTGAGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCGCAT-GCTCGTTTTGTGGGTTGACTTA
819 ACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGC-TCGCTCGTTTCGTGGGTTG----A
* *
21595551 GGCATATAGAGTTCATTCCCAATCTAAGCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGGA
1 --C-T-TAG-G--CA-T----A-C---G---A-A-A-TTCATTCCCAGTCTAAGATCGGACCAGA
* * **
21595616 CTGAGGGTTGCGACAGCACATGCTGGTTTCGGGCATGTGCTGGTGCCGCA--TTT-TTC-T----
44 CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* * **
21595673 ------TCGTCGGAGCATCGTCGGAGAACCTGATCGGCGGCATTGGGGTTCCGATGATCGGGGGG
109 GCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGG
* * *
21595732 GCC-GGGGGGTGTTCCCACATGATGTGCGAGGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
173 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
*
21595796 ATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
238 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * *
21595861 ACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAACATATTGTACA
303 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
21595926 CTTCGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCTCGTCTACCAAG
368 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * *
21595991 TTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCAAACCAT-AAAAGTTTTGAAAAT
433 TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
* * *
21596055 CGTGAAAAATAGAAAACGAGTTGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
498 CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
21596120 ATGAATTTACAGGCCATAAAAATGGCATTGGTATGCAGAAATATGAAGATGTGCCTAAACCCACC
563 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
* * *
21596185 TACCACCCTATCGATCCACGGCTTACGCAT-CC--C-ATCT------C-TA----CTGCCCG--C
628 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * * *
21596233 -CC-GCCCGCTCATTTCATCAGTTGGCTTAGGCATACGGAGTTCATTACTAGTCTAAGATCAGAC
693 GCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
* ** * * * * *
21596296 CGGACCAAGGGTTGCGGTAGCAGGATCGGTAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTT
758 TGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTT
* * * * * * * **
21596361 GCCCATCTCGCCCCTCTGGCCGGTTGAGCACCCACACATTCGTTTCGTGGGTTGA
823 GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
* *
21596416 TTTAGGCATAC-AGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CTTAGGCATACGA-AATTCATTCCCAGTCTAAG-AT-C-G-G---------A--C------CAGA
* * * * *
21596480 CCGGATCGAGGGTTGCGACAGCAAATGCTAGGCTCGGGCATGTCCTGGTGCTGCATTTTTCTTCG
44 -C----CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * *
21596545 TCGGGGCACCATCGTCGGAGCATC-ACTGGAGAACTTGACCGACAGCATTAGGGTTCCGGTGATC
104 TCGGGGCACCATCGTCGGAGCATCGTC-GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC
*
21596609 GGGGGGCC-TGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
168 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
21596673 CCCCTATCCCTCATCAAACCCCGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGT
233 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * ** * *** ** *
21596737 TTGCTTAGGCATACGGAGTTCATTCCCA--GTCT-AAGAT-CGGAC-C---GAACCGAGGGTTAC
298 TTGC-T--GC-CA-GTAG-CCATT-AAAGTGTCTGAA-ATGGGGACACTTTTTTCAAATGG-T-C
* * * * **** * * *** * *
21596794 GACAGCAGGATC-GGTAGGA-TGCAGAG-GGGAACCCGATCGATCTCCGGCTTGCGCATCCCACC
353 -ACA--A-AATCTTGTA-CACTTC-GAGTTTTTAGCTGA---AT-T--TTTTTGTGCATGCCA--
* ****** ** ** ** ** *
21596856 CCTCCGGCCGACTAAGCGCCCGTACGTTCGTTTCAAGGGTTGACTTAGG-CATACGGAGTTCATT
404 --ACAAAAATAC-AAG-GATC--ACG-TC-TACCAA--GTT---TGGGGCCA-A---AACTCCTT
* * * * *** ** ****
21596920 CCCAGTCTAACCATATGGAGTTCATTACCAGTCTAAGAT--CGGACCGGACCGAGGGTT--GCGG
452 -CC-G---AA--A-A---AATT--TTA--A----AAAATCCCGAACCGTAAAAAGTTTTAAAAAT
* ** * **** * **** *** **
21596981 CA-GCACATGTTGGGCTCG-GGCATGTGCTGGTGCCGTATTTTTCTTCACCG-G--GGCACCACC
498 CATG-AAAAATAGAAAACGAGTC--GT-CT--TGCC--ATGAAACTTCA-CGTGAAGGCTTAAGG
* * * * * ** * * *** * ** * * * ** ** ** *
21597041 GTCGA-AGCAT-CATCGAGAAACC-TGACTGACGGCATTGGGGTTCCGATGATCGGGGGGCCGGG
554 GACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCATGCAGA-AAT-ATGAAGATGTG
** *** * * **** * * * * * * * *
21597103 GGTGTGCGCACATGATGTGCC-ATGGGTGC-TGGTACTTG-G---CCC-T-TATAATGGCC-CCC
616 CCTAAACCCACCT-ACCACCCTATCGATCCACGG--CTTGCGCATCCCGTCTCT-CTGGCCGGCG
* ** * * * * ** * ** * **
21597159 TA-T-CCCTCATCAAACCTTGAAAACT-CACAC-CCCCTTAAAGAGCATTTGAGATT--TTATA-
677 TAGTGCCCGC--C-CGCC-CG---CCTGC-C-CGCTCGTT-TCG-TCGGTTG-GCTTAGGCATAC
* * * * * * ** * *** ***
21597217 GG-TTTGC--TGCCAG--TAAGCATTAAAGT-GTCTGA--AATG-GGGA-CACTTTTTTCA-CAT
730 GGAGTT-CATTCCCAGTCTAAG-ATCAGACTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCA-
* *** ** * * * * * * * ***** ** *
21597271 GGTCA-A--AAAATCTTGTACAC-TTCCCAGTC-TACG-GTTCGATCAAAAAAT-GTTGGCTTAG
792 CG-CAGAGGGGGA-CCCG-AC-CGATCCCCGACTTGCGCATCCCA-C-CCCTCTGGCCGGCTGAG
* ** * * * *
21597329 -GCATACG-GAGTTC-ATTCCT-AGTCTAAGA
851 CGC--CCGCTCGCTCGTTTCGTGGGT-T--GA
* * * *** * * * * * * * *
21597357 -TCAGACCAGACCGAGGGT--TGCGGCAG-C-AGGATCGGCAGCAGGCAGAGGG--G-GAC-CCG
1 CTTAG-GCATA-CGAAATTCATTC-CCAGTCTAAGATCGG-ACCAGACCGAGGGTTGCGGCAGC-
* * * * * * * * ** *** * * * *
21597413 ACCGATCCTCGGCTTGCGCA--TAC---CGCC-CCTCTGGC--CGAATGAGCGCC-T-GCACGCT
61 A-C-ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-TCG-G
* ** * * ** * ** * ** ** *
21597468 TGTTTCGTGGGTTG-ATTTAGGCATACGG-AGTT--GATTCCCAATCTAAGATCGGACCAGACCG
122 AGCATCGTCGG-AGAACCT-GACCGACGGCA-TTGGGGTT-CC-GGC---GATCGG--GGGGCCG
* * * * * * * * * * * **
21597529 AGAGTTGCG-GT-AGCACATGCTG-GC-CT-TGAGCAT-GTGCTGGGGCCGTAT-TTTTCTTCAC
177 -G-G-GGGGTGTGCGCACATGATGTGCGATGGGTGC-TGGTACTTGGCCCTTATATTGGC--C-C
**** * * ** * ** * **
21597587 CGGGGCACCATCGTCAAAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGTTTCGGCGATCGG
235 CCTATC-CC-TCATCAAA-C--C-TC-GAGAA-CTCA-C-ACCCCCTTAAAG----AGC-ATTTG
******** * * * * **** * * **
21597652 AGGGGCCGGGGGGTGTGC-GTACATGATGGGCAATGGGTGCTGGTACTTGGCCTTTATATTGGCC
285 A-GATTTTACAGGTTTGCTG-CCA-G-T-AGCCATTAAAG-T-GT-C-T-G-----AAATGGGGA
* * **** ** * *
21597716 CCCTATCCCTTATCAAACTTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
335 CACT-T---TTTTCAAA--T-G-G---TCACAAAATCTTGTACA-C-TTCGAG--TTT-----TT
* * * ** ** ** * **
21597781 TGCTGCCAGTAGCCACTAATGTGTCTGAAATGGGGACACTTTCTTCAAATGGTCACAA-AATCTT
380 AGCT----G-A---A-T--T-T-T-T----TTGTG-CA-TGCCAACAAA-AAT-ACAAGGATCAC
* *** * *** ** * * ** **
21597845 GTAC-ACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCATGTCT
423 GT-CTAC--CAAGTTTGGGGC-CAAAACTCCT-T-C---CGAA-AAAATTTTAA--A--AAATC-
** * * *
21597909 ACC-AAGTTTGGGGCCAAAAATCCTTCCGAAAGAATTTAAAAAAATCTTGAACCGCAAAAAGTTT
473 -CCGAA--------CC-GTAA--------AAAG--TTT-TAAAAATCATGAA----AAATAG---
*** *
21597973 CAAAAATCGTGAAAAATAGAAAATGAGTCGTGTTGCCATGGAAACTTCACGTGAAGGCTTAAGGG
510 -AAAACGAGTC---------------GTC---TTGCCAT-GAAACTTCACGTGAAGGCTTAAGGG
* * **
21598038 ACCACTGTATGAATTTACAAG-CAAAAAAATTGGCATTGGCACACAGAAATATGAAGATGTGCCT
555 ACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * * * *
21598102 AAACCCACCTACCACCCTATCGATCCACAGCTTCCGCATCTCGTCTCTCTGGCCGACATAGTGTC
619 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * * * * * * * *
21598167 TGCTCGCCCGCCCGCCCGCTCATTTCGACGGTTGGCTTAGGCGTACGGAGTCCAATCCCAATGTA
684 CGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * ** * *
21598232 AGATTGGACCT-GACTGAGGGTTACGGCAGCAAGATCGATAGCACGCAGAGGGGGACCCGGCCTA
749 AGATCAGA-CTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGA
* *
21598296 TCCTCGACTTGCGCATCCCACCCCTCTGGCCGGATGAGCGCCCGCAT-GCTCG-TTCGTGGGTTG
813 TCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGC-TCGCTCGTTTCGTGGGTTG
21598359 A
877 A
* * * * * *
21598360 CTTAGGCAGTACGGAATTCATTCTCAATCTAAGATCGGACGAGACCAAGGGTTACGGCAGCACAT
1 CTTAGGCA-TACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACAT
* * **
21598425 GCT-GGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGT
65 GCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGT
* * * * *
21598489 CAGAGAACCTGACTGACGGCATTTGGGTTCTGGCCAT--------C-GGGGGGTGTGCGCACATG
130 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATG
* *
21598545 ATGTGCCAAT-GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGA
195 ATGTG-CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
21598609 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTC
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * * *
21598674 TGAAATGAGGACACTTTTTTCAAATGGTTACAAAATCTTTTACACTTCGAGGTTTTAGATGAATT
324 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * ** * * *
21598739 TTTGTGTGGAAGTGAACAAAAATACAAGGATCATGTCTACCACGTTTGGGGCCAAAACCCCTTCC
389 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * *
21598804 GAAAAAATTTTAAAAAATCTC-ACACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAG
454 GAAAAAATTTTAAAAAATCCCGA-ACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAG
*
21598868 TCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAA
518 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * * * *
21598932 AATTGGCATTGACACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATTGATCCAA
583 AA-TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
* *
21598997 GGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCTGCCCACCTGCTCGTT
647 GGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTG--C-CC-GCTCGTT
* ** * ** *
21599062 TCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGAACCAAGGGTTGT
708 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGC
* * ** ** * * ** *
21599127 GACAGTAGGATCAACAGCACGCAGAGGGGGACCCGGTCGAT-CGCTAGCTTGCGCATTTCGCCCC
773 GGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCACCCC
**
21599191 TCTGGCCGGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGA
837 TCTGGCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
*
21599232 CTTAGGCATACGGAGTTCATTCCATGTTTAAGCATATGGAGTTCATTCCTAGTCTAAGATCAGAC
1 CTTAGGCATAC-GA----A----A---TT---C------A-TTC---CC-AGTCTAAGATCGGAC
** * * **
21599297 TGGACCGAGGGTTCCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGT
40 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * ** * * *
21599362 CGAGG---CA----C----CATCGTCGGAGAACCTGACCGGCGGCATTGAAGTTTCGACGATTGG
105 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
* * * * * *
21599416 GGGGGCTGGGGGGTGTTCACACATGATGTGCGACGGGTGCTGGTACTTGGCCTTTATATTGGCCC
170 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
21599481 CCTATCCCTCATTAAACCTCGATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
235 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
21599546 GTTGCCAGTAGCCATTAGAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTCACAAAATC-TGT
300 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * * * *
21599610 ACACTTTGAGTTTTAAGCTGAATTGTTTTGTGCATGCCAATAAAAATACAAGGATCAGGTCTACC
365 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* ** *
21599675 AAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAA
430 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAA
21599740 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
495 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * **
21599805 TCTATGAATTTTCAAGCCA-AAAAATTGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
560 TGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * * * * *
21599869 CACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGCTGACATAGTGTCTGCCC
624 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * * * * *
21599934 GCCCGCCCGCCCGCTCGTTTCGACGGTTGGCTTAGGCGTACGGAGTCCAATCCCAATGTAAGATT
689 GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
21599999 GGACCT-GACTGAGGGTTGCGACAGCAAGATCGGTAGCACGCAGAGGGGGACCCGGCCTATCCTC
754 AGA-CTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * *
21600063 GGCTTGCGCATCCCACCCCTC-GGCCGGATGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
818 GACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
* * * * *
21600122 CTTAGGCATACGAAAATCATTCTCAATCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATG
1 CTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * * ** *
21600187 CTAGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGTC
66 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* ** * *
21600252 GAAGAACCTGACCGGTGGCATTGGGGTTCTGGCTATCGGGGGGGCCGGGGGGGTGTGCGCACATG
131 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATG
* * * *
21600317 ATGTGTGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAGAA
195 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
* *
21600382 CTCACACCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCT
260 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
21600447 G-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGTGAATT
325 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATT
** *
21600511 TTTTTGTGCACACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCC
389 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * ** *
21600576 GAAAAAGTTTTAAAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
454 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
* *
21600641 AGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
519 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * * * *
21600706 ATGGCATTGGCACACAAAAATATAAAGATGAGCCTAAACCCACCTACCACCCTGTCGATCCACGG
584 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * * * * * * *
21600771 CTTGTGCATCCCGTCTCTCTGACCGGCATAGTG-TCGCCCGCCCACCCGCCCGTTCGTTTCATCA
649 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCG
* * * * *
21600835 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTGTAAGATCAGA-TCAGACCGAGGGTTGCGGTAG
714 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACTGAGGGTTGCGGCAG
* * *** * * *
21600899 CAGGATCGACAGCACGCAGATGGGGACCCGGTTGATCCTCCG-CTTGTGCATCCCGCCACTCTGG
778 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCC-CCGACTTGCGCATCCCACCCCTCTGG
* * * *
21600963 CCAGTTGAGTGCCCGCACGCTCGTTT-GTGGGTTGA
842 CCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
* * * * * * * * *
21600998 CTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAGATCGGACCGAAGGTTACGGCAGCACATA
1 CTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* ** * *
21601063 CTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCAACGGGGCACCATCAAT-GGATCATCGT
66 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-GTCGGAGCATCGT
** *
21601127 CGGAGAACCTGACCGACGGCATT-GGGTTCTAGCGATCGGGAGGGCCGGGGGGGTGTGCGCACTT
130 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG-GGGCCGGGGGGGTGTGCGCACAT
* * * *
21601191 AATGTGCGATGGGTGCCGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGA
194 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
21601256 ACTTACA-CCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTC
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
** * *
21601320 TG-AATGGGGACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATA
324 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * *
21601384 TTTTTGTACATGCCAACAAAAATAAAAGGATCACGTCTACCATGTTTGGGGCCAAAACACCTTTC
389 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* ** * * * *
21601449 GAAAAAATTTTCAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATATAAAACAAGT
454 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
* * * *
21601514 CATCTTGACATGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
519 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
21601579 ATGGCATTGGCACGAAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCAGGG
584 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
21601644 CTTGCGCATCCCGTCTCTCTTGCCGGCATAGTGCACGCCCGCCCGTCC-GCCCGCTCGTTTCGTC
649 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG-CCTGCCCGCTCGTTTCGTC
* * * * * ***
21601708 AGTTGGCTTAGGCATACGGAGTTAATTCCCAATCTAAGATCAGACCGGA-TCAAGGGTTGCAATA
713 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACT-GAGGGTTGCGGCA
* * * * * * * *
21601772 GCAAGATCGGCAGCACGTAGAGAGGGACCTGGCCGATCCTCGGCTTGCGCATCCCTCCCCTCTGG
777 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGG
* * *
21601837 CCGACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGA
842 CCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
* * *
21601873 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAGAGTTCATTCCCAATCTATGATCAGAC
1 CTTAGGCATACGAAATTCATTCCCAGTCTAAG-AT-C-G-G----------A-C------C--A-
** **
21601938 CGGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC
42 --GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * *
21602003 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGTATTGGGGTTCTGACGATCGG
105 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
* *
21602068 GGGGACCGGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCC
170 GGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
21602133 CCCTATCCCTCATCAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTT
234 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * *
21602198 TGCTACTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTTACATGGTCACAAAATCTTG
299 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
21602263 TACACTTCGAGTTTTTGGCCGAATTGTTTTGTGCATGCCAACAAAAATACAAGGGTCACGTCTAC
364 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * *
21602328 AAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAA
429 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAA
*
21602393 AAATCATGAAAAATAGAAAACGGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
494 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
21602458 TTGTATGAATTTAAAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGAGCCTAAACC
559 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
** * **
21602523 CACCTACCACATTTTCGATCCACAACTTGCGCATCCCGTCTCTCTGGCCGGCGTAGT--------
624 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * * *
21602580 GCCTGCTTGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATC
689 GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * *
21602645 -GAATTGGACCGAGTGTTGCGGCAGTAGGATCGACAGCAC-CAGAGAGGGACCCGATCGATCCCC
754 AG-ACTGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCC
* * * *
21602708 GCCTTGCACATCACACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
818 GACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
* * * *
21602768 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCACATG
1 CTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * *
21602833 CTAGGCTCGAGCATGTGCTGGTGCCGCATTTTTC-T--T-----C-CC-T--T-GGCACCATCGT
66 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG-AGCATCGT
* * * * * *
21602885 CGGAGAACCTAATCGGCGGCATTGGGGTTCCAGTGATCGGGGGGGCCGGGGGGGTTTGCGCACAT
130 CGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACAT
* *
21602950 GATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAA
194 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
21603015 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
*
21603080 TGAAATGGGGACACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
324 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * *
21603145 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCCATCT
389 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * *
21603210 GGAAAAATTTTTAAAAATCCCGAACCG-CAAAA-TTTTGAAAAATCATGAAAAATAGAAAACGAG
454 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTT-AAAAATCATGAAAAATAGAAAACGAG
* *
21603273 TCGTCTTGCCATGAAACTTCATGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
518 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
21603338 AATGGCATTGGCATGCAGAAATTTGAAGATGTACCTAAACCCACATACCACCCTATCGATCCATG
583 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * *
21603403 CCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CC-GCCCGCTCGTTGCGTT
648 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTC
* * * *
21603464 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACAGGAC-CATGGGTTGCAGCA
713 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGA-GGGTTGCGGCA
* * * * *
21603528 GTAGGATCGGCAGCACGTAGAGGGGGACCAGACCGATCCCC-AGCTTGCGCATCTCGCCCCTCTG
777 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCACCCCTCTG
* * *
21603592 GCTGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
841 GCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
* * * * ** * * * *
21603629 CTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGACTGGTCTGAGGGTTACGGCAGCACATA
1 CTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * *
21603694 CTGGGCTCGAGCATGTGCTAGTGCCGCATTTTTCTTCGTC-GGGC-CCATCGTCGGAG-AAC-T-
66 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* * * * ** * *
21603754 TG-G----T---CGGCGGAATTGGCGTTCCGATGATCGGGGGGGCCAGGGGGGTTGTGCACACAT
131 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGGGTGTGCGCACAT
* * * * * *
21603811 AATGTGTGATGGGTGCTGTTACTTGGTCCTCATATTGGCTCCCTATCCCTCATCAAACCTCGAGA
194 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
21603876 ACTCACACCCCCATAAAGAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAATTGTC
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * *
21603941 CGAAATGGGGACACTTCTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT
324 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * *
21604006 TTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAAATCCTTCC
389 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * *
21604071 AAAAAAATTTTAAAAAATCCCGAACCCTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
454 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
* *
21604136 CGTCTTGCCATGAAACTTCATGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
519 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
21604201 ATGGCATTGGCGTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGG
584 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * * * * * *
21604266 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCACCAACCTGCCCGTCCACTCGTTTCATTG
649 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCG
* * * * *
21604331 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGAACAGAGGGTTGTGGCAGC
714 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGC
* * * * * * * *
21604396 AGGATCGACAGCACACAGAGGGGGACCCGAGCGATCCCCGGCTTACGTATCTCACCCCTCTGGTC
779 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCC
* *
21604461 GGCTGAGCACCCG-TATGCTCGTTTCGTGGGTTGA
844 GGCTGAGCGCCCGCT-CGCTCGTTTCGTGGGTTGA
* *
21604495 CTTAGGCATAGGGAGTTCATTCCCAGTCGAAGCATATGGAGTTCATTCCCAATCTACGATCGGAC
1 C-T-----TA--G-G--CA-T---A--C---G-A-A---A-TTCATTCCCAGTCTAAGATCGGAC
* * *
21604560 CAGACCGAGGGTTGCGGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGT
40 CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * ** * * *
21604625 CGGGGCACCATCGCCGGAGCGTCACCGGAGAACCTGATCGACGGCATTAGGGTTCCGGTGATCGG
105 CGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGG
* *
21604690 GGGGCCGGGGGGGGTTTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCC
170 GGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
21604755 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
234 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
21604820 TGCTGCCAGTAGCTATTAAAGTGTCGGAAATGGGGACACTTTTTTTGAAATGGTCACAAAATCTT
299 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTT
* * * * *
21604885 GTACACTTTGAGTTTTTAGCTAAAGTTTTTTGTACATGCCAACAAAAATACAAGGAGCACGTCTA
363 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
21604950 CCAAGTTTGGGGCCAAAACTCCTGT-CGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTC
428 CCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTT
* *
21605014 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCATGTGAAGGCTTAAGGGAC
492 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
* * * *
21605079 CATTGTATGAATTTACAAGCCATAAAAATGGTACTGGCACGTAGAAATATGAAGATGTGCCTAAA
557 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAA
* * * * *
21605144 CCCACCTACCACCCTATCGAACCA---CTTGCGCATCCTGTCTCTCTGGCCAGTGTAGTGCCCGT
622 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* ** * **** * **
21605206 TCGCTTGCCCGTTAACTTGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGA
687 CCGCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-
* * * * *
21605271 AT-GGACCGGA-TCGAGGGTTGCGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCAATC
751 ATCAGACTGGACT-GAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATC
* * * * * ** * **
21605334 CTCGACTTGCACATCTCGCCCCTCTGGTCGGCTGAGCGCTAGCACGAACGTTTCGTGGGTTGA
815 CCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
* * * * * * * *
21605397 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGGACCGGACTGAGGGTTACGGCAGAACATG
1 CTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
* * *
21605462 CTGGGCTCGGGCATGTGCTGGTGTCACATTTTTCTTCGTC-GGG-------GT---ACCATCGTC
66 CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
* *** * * *
21605516 GGAGAACTTGACCGACGGCATTGGGGTTCCAATGATCGGGCGAGCTGGGAGGGCTGTGCGCACAT
131 GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG-GGGCCGGG-GGGGTGTGCGCACAT
* * * *
21605581 AATGTGCGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTTATCAAACCTCCAGA
194 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
21605646 ACTCACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTT
259 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
21605711 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATT
324 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* *
21605776 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTCCC
389 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * * *
21605841 AAAAAAATTTTAAAAAATCTCGAACCG-CAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGT
454 GAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGT
* * * *
21605905 CGCCCTGCCACGAAACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAA
519 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * **
21605970 ATGGCATTGGCATGCAGAAATATGAAGATGTACCAAAACCCACCTACCACCCTATCGATCCATAG
584 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** * * * *
21606035 CTTGCGCATCTCGTCTCTCTGGCCGATGTAGTGCCCACCCACCCGCCGGCCTGCTCGTTTCGGTC
649 CTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTC-GTC
* * * * *
21606100 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATAAGACCGGACTAAGGGTTGCGGTAG
713 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAG
* * * * * *
21606165 CAGGATCAGCAGCACGGAGAGGGGGATCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
778 CAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGC
* *
21606230 CGACTGAGAGCCCGCAT-GCTCGTTTCGTGGGTTGA
843 CGGCTGAGCGCCCGC-TCGCTCGTTTCGTGGGTTGA
* *
21606265 CTTAGGCATACGGAGTTTATTCCTAGCTAAGCATATGGAGTTCATTCCCAGTATAAAATCGGACC
1 CTTAGG----C-------A----TA-C---G-A-A---A-TTCATTCCCAGTCTAAGATCGGACC
* * * * * * *
21606330 AGACCAAGGTTTGCGGTAGCACAGGTTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATC
41 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * *
21606395 GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGATCGAAGGCGTTAGGGTTCCGGCGATTGGG
106 GGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGA-TCGG
*
21606460 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCC
170 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
21606525 CCTATCCCTCATCAAACCTTGAGAACTCACACGCCCTTAAGGAGCATTTGAGATTTTACAGGTTT
235 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
21606590 GCTGTCAATAGCCATTAAAATGTCTGAATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
300 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* **
21606655 ACACTTCGAGTTTTTAGCTGAATATTTTTT-TGCATGCCAAGAAAAATACAAGGATCTTG-CTAC
365 ACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * *
21606718 CAAGTTTGGGGCCAAAATTCCTTCTGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGA
429 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAA
* * * *
21606783 AAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGGCCA
494 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*
21606848 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATCTGCCTAAACC
559 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
21606913 CACCTACCACCCTATCAATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGGTGTAGT----GCCC
624 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * * *
21606974 G--C-CC-GCCCACTCGTTTCATTGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
689 GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
21607035 -GAACTGGA
754 AG-ACTGGA
21607043 TCAAGGGTTA
Statistics
Matches: 15391, Mismatches: 2340, Indels: 1607
0.80 0.12 0.08
Matches are distributed among these distances:
843 17 0.00
844 2 0.00
845 3 0.00
846 1 0.00
847 1 0.00
852 1 0.00
853 1 0.00
855 3 0.00
856 180 0.01
857 321 0.02
858 8 0.00
859 2 0.00
860 113 0.01
861 443 0.03
862 194 0.01
863 66 0.00
864 226 0.01
865 180 0.01
866 368 0.02
867 200 0.01
868 167 0.01
869 415 0.03
870 15 0.00
871 183 0.01
872 1325 0.09
873 308 0.02
874 311 0.02
875 219 0.01
876 816 0.05
877 1743 0.11
878 420 0.03
879 66 0.00
880 56 0.00
881 43 0.00
882 97 0.01
883 56 0.00
884 204 0.01
885 299 0.02
886 30 0.00
887 58 0.00
888 146 0.01
889 579 0.04
890 274 0.02
891 523 0.03
892 148 0.01
893 240 0.02
894 319 0.02
895 564 0.04
896 261 0.02
897 47 0.00
898 278 0.02
899 72 0.00
900 8 0.00
901 108 0.01
902 409 0.03
903 453 0.03
904 525 0.03
905 327 0.02
906 13 0.00
907 8 0.00
908 2 0.00
909 9 0.00
910 20 0.00
911 14 0.00
912 7 0.00
913 25 0.00
914 16 0.00
915 8 0.00
917 3 0.00
918 3 0.00
919 15 0.00
920 6 0.00
921 4 0.00
922 1 0.00
923 9 0.00
924 1 0.00
925 9 0.00
926 16 0.00
927 17 0.00
928 41 0.00
929 27 0.00
930 30 0.00
931 9 0.00
932 7 0.00
933 2 0.00
935 3 0.00
936 4 0.00
937 4 0.00
938 10 0.00
939 11 0.00
940 24 0.00
941 24 0.00
942 8 0.00
943 3 0.00
944 1 0.00
945 8 0.00
946 8 0.00
947 7 0.00
948 8 0.00
949 16 0.00
950 10 0.00
951 7 0.00
952 7 0.00
954 2 0.00
955 1 0.00
956 7 0.00
957 7 0.00
958 11 0.00
959 5 0.00
960 2 0.00
961 4 0.00
962 7 0.00
963 3 0.00
964 5 0.00
965 7 0.00
966 1 0.00
967 2 0.00
968 5 0.00
969 12 0.00
970 3 0.00
971 2 0.00
973 2 0.00
974 2 0.00
975 1 0.00
976 1 0.00
977 4 0.00
978 1 0.00
979 5 0.00
980 1 0.00
981 1 0.00
982 10 0.00
983 5 0.00
984 2 0.00
988 7 0.00
989 1 0.00
990 3 0.00
991 5 0.00
992 2 0.00
993 8 0.00
994 11 0.00
995 19 0.00
996 41 0.00
997 24 0.00
998 24 0.00
999 11 0.00
1000 33 0.00
1001 8 0.00
1002 2 0.00
1003 15 0.00
1004 21 0.00
1005 41 0.00
1006 19 0.00
1007 3 0.00
1008 3 0.00
1009 3 0.00
1010 2 0.00
1011 4 0.00
1012 10 0.00
1013 16 0.00
1014 6 0.00
1015 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (877 bp):
CTTAGGCATACGAAATTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATG
CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC
GGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGA
TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTCGTCGGT
TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCAG
GATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGG
CTGAGCGCCCGCTCGCTCGTTTCGTGGGTTGA
Found at i:21594692 original size:26 final size:26
Alignment explanation
Indices: 21594654--21594704 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21594644 GTTGACTTAT
21594654 GCATATGATGTTCATTCCCAGTCTAG
1 GCATATGATGTTCATTCCCAGTCTAG
21594680 GCATATGGA-GTTCATTCCCAGTCTA
1 GCATAT-GATGTTCATTCCCAGTCTA
21594705 AGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.24, C:0.24, G:0.20, T:0.33
Consensus pattern (26 bp):
GCATATGATGTTCATTCCCAGTCTAG
Found at i:21595581 original size:26 final size:26
Alignment explanation
Indices: 21595552--21595604 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21595542 GTTGACTTAG
*
21595552 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
21595578 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
21595604 G
1 G
21595605 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:21596457 original size:26 final size:26
Alignment explanation
Indices: 21596421--21596473 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21596411 GTTGATTTAG
21596421 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21596447 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21596473 G
1 G
21596474 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21596934 original size:26 final size:26
Alignment explanation
Indices: 21596905--21596955 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21596895 TTGACTTAGG
*
21596905 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTACCAGTCTAAC
*
21596931 CATATGGAGTTCATTACCAGTCTAA
1 CATACGGAGTTCATTACCAGTCTAA
21596956 GATCGGACCG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTACCAGTCTAAC
Found at i:21599289 original size:26 final size:26
Alignment explanation
Indices: 21599237--21599289 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21599227 GTTGACTTAG
*
21599237 GCATACGGAGTTCATTCCATGTTTAA
1 GCATACGGAGTTCATTCCATGTCTAA
*
21599263 GCATATGGAGTTCATTCC-TAGTCTAA
1 GCATACGGAGTTCATTCCAT-GTCTAA
21599289 G
1 G
21599290 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCATGTCTAA
Found at i:21601928 original size:26 final size:26
Alignment explanation
Indices: 21601878--21601928 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21601868 GTTGACTTAG
* * *
21601878 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
21601904 GCATACAGAGTTCATTCCCAATCTA
1 GCATACAGAGTTCATTCCCAATCTA
21601929 TGATCAGACC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:21602371 original size:904 final size:894
Alignment explanation
Indices: 21597319--21607060 Score: 11209
Period size: 904 Copynumber: 11.1 Consensus size: 894
21597309 ATCAAAAAAT
* * *
21597319 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGC
* * * *
21597384 AGGATCGGCAGCAGGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATACCGCCCCTCTGGCC
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * * * *
21597449 GAATGAGCGCCTGCACGCTTGTTTCGTGGGTTGATTTAGGCATACGGAGTTGATT-C----C---
131 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * * *
21597506 -CA--A-TC-T-A---A-GATCGGACCAGACCGAGAGTTGCGGTAGCACATGCTGGCCTTGAGCA
196 GCATCAGTCATCATCTATGATC-GACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * * **
21597561 TGTGCTGGGGCCGTATTTTTCTTCACCGGGGCACCATCGTCAAAGCATCGTCGGAGAACCTGACC
260 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * * * * * *
21597626 GACGGCATTAGGGTTTCGGCGATCGGAGGGGCC-GGGGGGTGTGCGTACATGATGGGCAATGGGT
325 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
21597690 GCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTTATCAAACTTCGAGAACTCACACCCCCTT
390 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* *
21597755 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAATGTGTCTGAAATGGGGACAC
455 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
21597820 TTTCTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCC
520 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * * *
21597885 AACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAGAATTTAAAA
585 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
** * * * *
21597950 AAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTGTTGCCATGGA
650 AAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT-GA
* * *
21598015 AACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAG-CAAAAAAATTGGCATTGGCA
714 AACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTGGCA
** * * *
21598079 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTCCGCATCTC
778 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * * * *
21598144 GTCTCTCTGGCCGACATAGTGTCTGCTCGCCCGCCCGCCCGCTCATTTCGACG
843 GTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCACTCGTTTCGTCG
* * * * * ** * ** *
21598197 GTTGGCTTAGGCGTACGGAGTCCAATCCCAATGTAAGATTGGACCTGACTGAGGGTTACGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGC
* ** * * * *
21598262 AAGATCGATAGCACGCAGAGGGGGACCCGGCCTATCCTCGACTTGCGCATCCCACCCCTCTGGCC
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
21598327 GGA-TGAGCGCCCGCATGCTCG-TTCGTGGGTTGACTTAGGCAGTACGGA----ATT-C-A---T
131 -GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA-TACGGAGTTCATTCCTAGTCT
* * *
21598381 -----TC--TCA--ATCTAAGATCGGACGAGACCAAGGGTTACGGCAGCACATGCT-GGCTCGGG
194 AAGCATCAGTCATCATCTATGATC-GACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
* * * *
21598436 CATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCAGAGAACCTGA
258 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGA
* * * * * *
21598501 CTGACGGCATTTGGGTTCTGGCCAT---------C-GGGGGGTGTGCGCACATGATGTGCCAAT-
323 CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG-CGATG
*
21598555 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAGAACTCACACCCC
387 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
21598620 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTGAAATGAGGA
452 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * * * * *
21598685 CACTTTTTTCAAATGGTTACAAAATCTTTTACACTTCGAGGTTTTAGATGAATTTTTGTGTGGAA
517 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
** * * * *
21598750 GTGAACAAAAATACAAGGATCATGTCTACCACGTTTGGGGCCAAAACCCCTTCCGAAAAAATTTT
582 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT
* ** * * * *
21598815 AAAAAATCTC-ACACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCCTCTTGCCA
647 AAAAAATCCCGA-ACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
21598879 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA-AAAAATTGGCATTG
711 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGGCATTG
* * * * * * *
21598943 ACACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATTGATCCAAGGCTTGCGTAT
775 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * *
21599008 CCCGTCTCTCTGGCCGGCGTAGTGCCCACCCGCCCGCCTGCCCACCTGCTCGTTTCATCG
840 CCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCA----CTCGTTTCGTCG
** * * * * *
21599068 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGAACCAAGGGTTGTGACAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGC
** * * ** **
21599133 AGGATCAACAGCACGCAGAGGGGGACCCGGTCGATCGCTAGCTTGCGCATTTCGCCCCTCTGGCC
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
21599198 GGCTGAGCGCCCGCAAGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-ATGTTTA
131 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTA-GTCTA
* * ** * *
21599262 AGCATATGGAGTTCATTCCTAGTCTAAGATCAGACTGGACCGAGGGTTCCGACAGCACATGCTGG
195 AGC--AT-CAG-TCA-T-C-A-TCTATGATC-GACCAGACCGAGGGTTACGGCAGCACATGCTGG
** * *
21599327 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGAGG---CA----C----CATCGTCGGAG
251 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAG
* ** * * * * *
21599381 AACCTGACCGGCGGCATTGAAGTTTCGACGATTGGGGGGG-CTGGGGGGTGTTCACACATGATGT
316 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * * *
21599445 GCGACGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATTAAACCTCGATAACTCA
381 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
21599510 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAGAGTGTCTGAAA
446 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
21599575 TGGGGACACTTTTTTCGAATGGTCACAAAATC-TGTACACTTTGAGTTTTAAGCTGAATTGTTTT
511 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
21599639 GTGCATGCCAATAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
576 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
** ** **
21599704 AATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCT
641 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
21599769 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTTCAAGCCA-AAAAATTGG
706 TGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGG
** *
21599833 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTG
770 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * * *
21599898 CGCATCTCGTCTCTCTGGCTGACATAGTGTCTGCCCGCCCGCCCGCCCGCTCGTTTCGACG
835 CGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCACTCGTTTCGTCG
* * * * * ** * ** *
21599959 GTTGGCTTAGGCGTACGGAGTCCAATCCCAATGTAAGATTGGACCTGACTGAGGGTTGCGACAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGC
* * * * *
21600024 AAGATCGGTAGCACGCAGAGGGGGACCCGGCCTATCCTCGGCTTGCGCATCCCACCCCTC-GGCC
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
21600088 GGA-TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAC-GA----A-----AATC--
131 -GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
* * * *
21600140 A--TTC--TCA--ATCTAAGATCGGACCAGACCAAGGGTTACGGCAGCACATGCTAGGCTCGGGC
195 AGCATCAGTCATCATCTATGATC-GACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGC
* * * * *
21600199 ATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTCAGAGCATCGTCGAAGAACCTGAC
259 ATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGAC
** * * * * *
21600264 CGGTGGCATTGGGGTTCTGGCTATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGC
324 CGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
21600329 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCAAGAACTCACACCCCCT
389 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
21600394 TAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTG-AATGGGGACA
454 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
**
21600458 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCGTGAATTTTTTTGTGCACA
519 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGC-TGAATTTTTTTGTGCATG
* * *
21600523 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAGTTTTA
583 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
* * *
21600588 AAAAATCTCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTAGTCTTGCCAGG
648 AAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
21600653 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
713 AAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
** * * * * *
21600718 CACAAAAATATAAAGATGAGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTTGTGCATCCC
778 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * ** * *
21600783 GTCTCTCTGACCGGCATAGTGTCGCCCGCCCACCCGCCCGTTCGTTTCATCA
843 GTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCACTCGTTTCGTCG
* * * * * *
21600835 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTGTAAGATCAGATCAGACCGAGGGTTGCGGTAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGC
* * ** * *
21600900 AGGATCGACAGCACGCAGATGGGGACCCGGTTGATCCTCC-GCTTGTGCATCCCGCCACTCTGGC
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCC-CCGGCTTGCGCATCCCGCCCCTCTGGC
* *
21600964 C-AGTTGAGTGCCCGCACGCTCGTTT-GTGGGTTGACTTAGGCATACGGAGTTCATT-CTCAGTC
130 CGA-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCT-AGTC
*
21601026 TAAG-ATCAG-----ATC---G---GACC-GA---A-GGTTACGGCAGCACATACTGGGCTCGGG
193 TAAGCATCAGTCATCATCTATGATCGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG
* * * *
21601074 CATGTGCTGGTGTCGCATTTTTCTTCAACGGGGCACCATCAAT-GGATCATCGTCGGAGAACCTG
258 CATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC-GTCGGAGCATCGTCGGAGAACCTG
* * * *
21601138 ACCGACGGCATT-GGGTT-CTAGCGATCGGGAGGGCCGGGGGGGTGTGCGCACTTAATGTGCGAT
322 ACCGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * * *
21601201 GGGTGCCGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTTACA-CC
386 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
21601265 CCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCTG-AATGGGG
451 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
** * * *
21601329 ACACTTTTTTCAAATCATCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATATTTTTGTACA
516 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
21601394 TGCCAACAAAAATAAAAGGATCACGTCTACCATGTTTGGGGCCAAAACACCTTTCGAAAAAATTT
581 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTT
* * * * * *
21601459 TCAAAAATCCCGAACCACAAAAAGTTTCAAAAATCGTGAAAAATATAAAACAAGTCATCTTGACA
646 TAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
21601524 TGAAACTTAATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
711 TGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
21601589 CACGAAGAAATATGAAGATGCGCCTAAACCCACCTACCACCCTATCGATCCAGGGCTTGCGCATC
776 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
21601654 CCGTCTCTCTTGCCGGCATAGTGCACGCCCGCCCGTCCGCCCGCTCGTTTCGTCA
841 CCGTCTCTCTGGCCGGCGTAGTGC-CGCCCGCCCGCCCGCCCACTCGTTTCGTCG
* * * ***
21601709 GTTGGCTTAGGCATACGGAGTTAATTCCCAATCTAAGATCAGACCGGATCAAGGGTTGCAATAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGC
* * * * * *
21601774 AAGATCGGCAGCACGTAGAGAGGGACCTGGCCGATCCTCGGCTTGCGCATCCCTCCCCTCTGGCC
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
21601839 GACTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
131 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * **
21601904 GCATACAGAGTTCATTCCCAATCTATGATCAGACCGGACCGAGGGTTGCAACAGCACATGCTGGG
196 GCAT-C--AG-TCA-T--C-ATCTATGATC-GACCAGACCGAGGGTTACGGCAGCACATGCTGGG
*
21601969 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGTCGGAGA
252 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
21602034 ACCTGACCGACGGTATTGGGGTTCTGACGATCGGGGGGACCGGGGGGGTGTGCGCACATGATTTG
317 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
21602099 CGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
382 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
21602164 AACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAAT
447 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
21602229 GGGGACACTTTTTTTACATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCCGAATTGTTTTG
512 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
21602294 TGCATGCCAACAAAAATACAAGGGTCACGTCTACAAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
577 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
** *
21602359 ATTTTAAAAAATCCCGAACCTTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTCGTCTT
642 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
21602424 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCA
707 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * ** * **
21602489 TTGGCATGCAAAAATATGAAGATGAGCCTAAACCCACCTACCACATTTTCGATCCACAACTTGCG
772 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* **
21602554 CATCCCGTCTCTCTGGCCGGCGTAGT-------GCCTGCTTGCCCACTCGTTTCGTCG
837 CATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCACTCGTTTCGTCG
* * ** * *
21602605 GTTGGCTTAGGCATACGAAGTTCATTCCTAGTCTAAGATC-GAATTGGACCGAGTGTTGCGGCAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCAAGGGTTGCGGCAG
* * * ** * * * *
21602669 TAGGATCGACAGCAC-CAGAGAGGGACCCGATCGATCCCCGCCTTGCACATCACACCCCTCTGGC
65 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* *
21602733 CGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
130 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
* * *
21602798 AG-ATCAG--A-C--C-A-GAT---------CGAGGGTTGCGGCAGCACATGCTAGGCTCGAGCA
195 AGCATCAGTCATCATCTATGATCGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * *
21602846 TGTGCTGGTGCCGCATTTTTC-T--T-----C-CC-T--T-GGCACCATCGTCGGAGAACCTAAT
260 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGG-AGCATCGTCGGAGAACCTGAC
* * * *
21602898 CGGCGGCATTGGGGTTCC-AGTGATCGGGGGGGCCGGGGGGGTTTGCGCACATGATGTGCAATGG
324 CGACGGCATTGGGGTTCCGA-CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGG
*
21602962 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAAAACTCACACCCCC
388 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
21603027 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
453 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
21603092 ACTTTTTCCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
518 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
21603157 CCAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGGCCAAAACTCC-ATCTGGAAAAATTTT
583 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTT
* * * *
21603221 TAAAAATCCCGAACCGC-AAAATTTTGAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
647 AAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
*
21603285 GAAACTTCATGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
712 GAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
21603350 ATGCAGAAATTTGAAGATGTACCTAAACCCACATACCACCCTATCGATCCATGCCTTGCGCATCC
777 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
21603415 CGTCTCTCTGGCCGACGTAGT---GCCCGCCCGCCCGCCCGCTCGTTGCGTTG
842 CGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCACTCGTTTCGTCG
* * * * *
21603465 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACAGGACCATGGGTTGCAGCAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGC
* * * * * *
21603530 AGGATCGGCAGCACGTAGAGGGGGACCAGACCGATCCCCAGCTTGCGCATCTCGCCCCTCTGGCT
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
*
21603595 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT-A
131 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * * * *
21603659 --AT-A-TCA-GA-C-----T-G----GTCTGAGGGTTACGGCAGCACATACTGGGCTCGAGCAT
196 GCATCAGTCATCATCTATGATCGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
* * * *
21603708 GTGCTAGTGCCGCATTTTTCTTCGTC-GGGC-CCATCGTCGGAG-AAC-T-TG-G----T---CG
261 GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
* * * * * * * *
21603760 GCGGAATTGGCGTTCCGATGATCGGGGGGGCCAGGGGGGTTGTGCACACATAATGTGTGATGGGT
326 ACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * * *
21603825 GCTGTTACTTGGTCCTCATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCAT
390 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * * *
21603890 AAAGAACATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAATTGTCCGAAATGGGGACAC
455 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * *
21603955 TTCTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTATGCATGCC
520 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * * *
21604020 AACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAAATCCTTCCAAAAAAATTTTAAA
585 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAA
21604085 AAATCCCGAACC-CTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
650 AAATCCCGAACCAC-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
21604149 AACTTCATGTGAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGT
714 AACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* *
21604214 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTGCGCATCCCG
779 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
21604279 TCTCTCTGGCCGGCGTAGTGCC-CACCAACCTGCCCGTCCACTCGTTTCATTG
844 TCTCTCTGGCCGGCGTAGTGCCGC-CC-GCCCGCCCGCCCACTCGTTTCGTCG
* * *
21604331 GTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACC-GAACAGAGGGTTGTGGCAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA-AGGGTTGCGGCAG
* * * * * *
21604395 CAGGATCGACAGCACACAGAGGGGGACCCGAG-CGATCCCCGGCTTACGTATCTCACCCCTCTGG
65 CAGGATCGGCAGCACGCAGAGGGGGACCCG-GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * * * *
21604459 TCGGCTGAGCACCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCG
129 CCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCT
* * * * *
21604524 AAGCATATGGAGTTCATTCCCAATCTACGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTA
194 AAGC--AT-CAG-TCA-T--C-ATCTATGATC-GACCAGACCGAGGGTTACGGCAGCACATGCTG
* * * * **
21604589 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCGTCACCGGA
250 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGA
* * ** *
21604654 GAACCTGATCGACGGCATTAGGGTTCCGGTGATC-GGGGGGCCGGGGGGGGTTTGCGCACATGAT
315 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGGTGTGCGCACATGAT
*
21604718 GTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
379 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
21604783 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCGGA
444 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
21604848 AATGGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTAAAGTTT
509 AATGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
21604913 TTTGTACATGCCAACAAAAATACAAGGAGCACGTCTACCAAGTTTGGGGCCAAAACTCCTGTCGA
573 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGA
* *
21604978 AAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
638 AAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
*
21605043 TCTTGCCATGAAACCTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
703 TCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
21605108 GGTACTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAACCA---CT
768 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * ** ** *** *
21605170 TGCGCATCCTGTCTCTCTGGCCAGTGTAGTGCCCGTTCGCTTGCCCGTTAACTTGTTTCGTCG
833 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCACTCGTTTCGTCG
** * * *
21605233 GTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGAAT-GGACCGGATCGAGGGTTGCGGCAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATCAGACCGGACCAAGGGTTGCGGCAG
* * * * * * * * *
21605297 CAAGATCGGTAGCACGCAGAGGGGGACCCGACCAATCCTCGACTTGCACATCTCGCCCCTCTGGT
65 CAGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* ** ** * *
21605362 CGGCTGAGCGCTAGCACGAACGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT-
130 CGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
* * *
21605426 ---A--AG-----A--T-TG---GACCGGACTGAGGGTTACGGCAGAACATGCTGGGCTCGGGCA
195 AGCATCAGTCATCATCTATGATCGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * * * *
21605475 TGTGCTGGTGTCACATTTTTCTTCGTC-GGG-------GT---ACCATCGTCGGAGAACTTGACC
260 TGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACC
* * * * * * *
21605529 GACGGCATTGGGGTTCCAATGATCGGGCGAGCTGGGAGGGCTGTGCGCACATAATGTGCGATGGG
325 GACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGGG
* * * *
21605594 TGCTGGTACTTGGCCCTCATATTGGCCCCCTATCCCTTATCAAACCTCCAGAACTCACACCCCCA
389 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
21605659 TAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
454 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
21605724 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTTTTTTGTGCATGC
519 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* ** *
21605789 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTCCCAAAAAAATTTTAA
584 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAA
* * * * * *
21605854 AAAATCTCGAACCGC-AAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGCCCTGCCACGA
649 AAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
21605918 AACTTCACGTGAAGGCTTAAGGTACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
714 AACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * ** *
21605983 GCAGAAATATGAAGATGTACCAAAACCCACCTACCACCCTATCGATCCATAGCTTGCGCATCTCG
779 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
** * * * **
21606048 TCTCTCTGGCCGATGTAGTGCCCACCCACCCGCCGGCCTGCTCGTTTCGGTCG
844 TCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCGCCCGCCCACTCGTTTC-GTCG
* * * *
21606101 GTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATAAGACCGGACTAAGGGTTGCGGTAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGC
* * *
21606166 AGGATCAGCAGCACGGAGAGGGGGATCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
66 AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
21606231 GACTGAGAGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCCTAG-CTAA
131 GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
* * ** * * * * * *
21606295 GCATATGGAGTTCATTCCCAGTATAAAATCGGACCAGACCAAGGTTTGCGGTAGCACAGGTTGGG
196 GC--AT-CAG-TCA-T--CA-TCTATGATC-GACCAGACCGAGGGTTACGGCAGCACATGCTGGG
* *
21606360 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
252 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
21606425 ACCTGATCGAAGGCGTTAGGGTTCCGGCGATTGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
317 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
21606490 CGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
382 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
21606555 ACGCCCTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGTCAATAGCCATTAAAATGTCTGAATT
447 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
21606620 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTT
512 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTT
* ** *
21606685 -TGCATGCCAAGAAAAATACAAGGATCTTG-CTACCAAGTTTGGGGCCAAAATTCC-TTCTGAAA
576 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAA
** ** * *
21606747 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAAGGAGTCGTC
640 AAATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
21606812 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGG
705 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
21606877 CATTGGCATGCAGAAATATGAAGATCTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTG
770 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
21606942 TGCATCCTGTCTCTCTGGCCGGTGTAGT-------GCCCGCCCGCCCACTCGTTTCATTG
835 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCACTCGTTTCGTCG
* * * * *
21606995 GTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGATCAAGGGTTACAGCAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCAAGGGTTGCGGCAG
21607059 CA
65 CA
21607061 CATGCTGGGC
Statistics
Matches: 7624, Mismatches: 975, Indels: 514
0.84 0.11 0.06
Matches are distributed among these distances:
856 185 0.02
857 326 0.04
858 1 0.00
859 4 0.00
860 121 0.02
861 428 0.06
862 191 0.03
863 1 0.00
864 222 0.03
865 179 0.02
866 333 0.04
867 204 0.03
868 488 0.06
869 57 0.01
870 6 0.00
871 140 0.02
872 22 0.00
873 271 0.04
874 272 0.04
875 223 0.03
876 463 0.06
877 399 0.05
878 168 0.02
879 7 0.00
880 7 0.00
881 9 0.00
883 1 0.00
884 1 0.00
885 3 0.00
886 4 0.00
887 34 0.00
888 7 0.00
889 7 0.00
890 45 0.01
891 117 0.02
892 56 0.01
893 64 0.01
894 73 0.01
895 424 0.06
896 255 0.03
897 38 0.00
898 37 0.00
900 2 0.00
901 96 0.01
902 353 0.05
903 459 0.06
904 519 0.07
905 302 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (894 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCGGCAGC
AGGATCGGCAGCACGCAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
GCATCAGTCATCATCTATGATCGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCG
ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAA
AATCCCGAACCACAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCCGCCCACTCGTTTCGTCG
Found at i:21607901 original size:26 final size:26
Alignment explanation
Indices: 21607871--21607923 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21607861 GTTGACTTAG
21607871 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
21607897 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21607923 G
1 G
21607924 ATCGGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21608832 original size:25 final size:26
Alignment explanation
Indices: 21608765--21608842 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
21608755 GTTGACTTTG
21608765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21608791 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21608817 GCATAC-GAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21608842 G
1 G
21608843 ATCGGACCAA
Statistics
Matches: 52, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
25 20 0.38
26 32 0.62
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21609370 original size:919 final size:910
Alignment explanation
Indices: 21607005--21609622 Score: 3577
Period size: 902 Copynumber: 2.9 Consensus size: 910
21606995 GTTAGCTTAG
* * * *
21607005 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACTGGATCAAGGGTTACAGCAGCACATGCTGGG
1 GCATAC-GAGTTCATTCCCAGTCTAAGATCGGAC--CA-CGAGGGTTACAGTAGCACATGCTGGG
* *
21607070 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTC-CATGGGCACCATC-GTCGGAGCATCGCCG-G-
62 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCTCA-GGGCACCATCGGT-GGAGCATCGTCGAGA
*
21607131 ACC-G--GCGGCATTGGGGTTCCGCGATCGAGGGGCCGAGGGGGGTGTGCGCACATGATGTGC-A
125 ACCTGACGCGGCATTGGGGTTCCGCGATCGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGA
*
21607192 ATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-
189 A-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
* * * *
21607256 CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCCGCTAGTAGCTATTAAAGTGTCTGAAATGG
253 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
21607321 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
318 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* *
21607386 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATT
383 ATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATT
* * *
21607451 TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCATCTTGCC
448 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
21607516 GTGAAACTACATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
513 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
*
21607581 GCAT-GCAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCA
578 GCATAG-AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
*
21607645 TCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTCGCCTGCTCATTTCGTCGGTTGGCTT
642 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTT---C-G-T--TTT-GTCGGTTGGCTT
* * * * *
21607710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGAACCGAGTGTTACGGTAGCAGGATCGA
699 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCGGTAGCAGGATCGG
* * * * *
21607775 CAGCATGCAGAGGGGAACCCGGTCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGT
764 CAGCATGCAGAGGGG-ACCTGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCAGACTGAGC
21607840 GCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
828 GCCCACACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGG
*
21607905 AGTTCATTCCTAGTCTAA
893 AGTTCATTCCCAGTCTAA
21607923 G-AT-CG-G---------A--CT---A---GACCA-G-GGGTTACAGTAGCACATGCTGGGCTCG
1 GCATACGAGTTCATTCCCAGTCTAAGATCGGACCACGAGGGTTACAGTAGCACATGCTGGGCTCG
** * * ** *
21607966 GGCATGACCTGGTGCCGCATTTTTTTTCATCGGGGCACCATCGCCGGAGCATCGTGGGAGAACCT
66 GGCATGTGCTGGTGCCGCATTTTTCTTC-TCAGGGCACCATCGGTGGAGCATCGT-CGAGAACCT
* * *
21608031 GACCGGCGGCATTGGGGTTCCGGTGATCAGGGGGCC--GGGGGTGTGCGCACATGATGTGCGATG
129 GA-C-GCGGCATTGGGGTTCC-GCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAAG
* *
21608094 GGCGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
191 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
* * *
21608159 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATAAGGA
256 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGA
* * * *
21608224 CACTTTTTTAAAATTTGTTACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCA
320 CACTTTTTTCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* *
21608289 TGCCAACAAAAATACAAGGATAACGTCTACCAAGTGTGGGGCGAAAACTCCTTCCAAAAAAATTT
384 TGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTT
* * *
21608354 TAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATTGTGACAAATAGAAAACGAGTCGTCTTGCCA
449 TAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
21608419 TGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGG
514 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
21608484 CATAGAGAAATATGAAGATGTACCTAAAGCCACCTACAACCCTATCGATCCACGGCTTGCGCATC
579 CATAGAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * *
21608549 CCGTCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGTTCGTTTTGTCGGTTAGCTTAGGCATACGG
644 CCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGG
*
21608614 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCGGTAGCAGGATCGGTAGCATGCAG
709 AGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCGGTAGCAGGATCGGCAGCATGCAG
* * * * *
21608679 ATGGGGACTTGGTCGATCCCCGGCTTACGCATCCCGCCCCTTTGGCAGGCTGAGCGCCCGCACGC
774 A-GGGGACCTGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCAGACTGAGCGCCCACACAC
* * *
21608744 TCGTTTCGTGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
838 TCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
21608809 CAGTCTAA
903 CAGTCTAA
* *
21608817 GCATACGAGTTCATTCCCAGTCTAAGATCGGACCAACCGAGGGTTGCGGTAGCACATGCTGGGCT
1 GCATACGAGTTCATTCCCAGTCTAAGATCGGACC-A-CGAGGGTTACAGTAGCACATGCTGGGCT
* *
21608882 TGGGCATGTGCTGGTGCTGCA-TTTTCTTCGTCAGGGCACCATCGGTGGAGCATCGTCGAAGAAC
64 CGGGCATGTGCTGGTGCCGCATTTTTCTTC-TCAGGGCACCATCGGTGGAGCATCGTCG-AGAAC
* *
21608946 CTGATCGACGGCTTTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTGTACGCACATGATGTGCG
127 CTGA-CG-CGGCATTGGGGTTCC-GCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
* *
21609011 AAGGGTGCTAGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
188 AAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
21609076 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
253 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-G
*
21609141 GGACACTTTTTTCAAATGGTCACAAAATCTT-TAACACTTCGAGTTTTTAGCTGAATTATTTTGT
317 GGACACTTTTTTCAAATGGTCACAAAATCTTGT-ACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
21609205 GCATGCCAACAAAAATACAAGGATTACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
381 GCATGCCAACAAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * * * *
21609270 TTTTAAAAAATCCCGAACCATAAAAGGTTTCGAAAATCATGAAAAATAGAAAACGACTCGTCTTG
446 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
21609335 CCATGAAACTTGACGTGAAGGCTT-AGGGCACCATTGTATGAATTTACAAGCCAAAAAAATGGCA
511 CCATGAAACTTCACGTGAAGGCTTAAGGG-ACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
21609399 TTGGCACATAGAAATACGAAGATG-AGCCTAAACCCACATACCACACTATCGATCCACTGCTTGC
575 TTGGCATAGAGAAATATGAAGATGTA-CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * **
21609463 GCATCCCGTCTCTCTGGCCGACGTAGTGCCAGCCCACACGCCTGCTT-GTTTCATCGGTTGGCTT
639 GCATCCCGTCTCTCTGGCCGACGTAGTGCC--CGC-C-CGCCCG-TTCGTTTTGTCGGTTGGCTT
* ** ** *
21609527 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTTCGACAGCATGATCGG
699 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCGGTAGCAGGATCGG
* * *
21609592 CCGCACGCAGAGGGGGACCTGGACGATCCCC
764 CAGCATGCAGA-GGGGACCTGGTCGATCCCC
21609623 AGCATACGGA
Statistics
Matches: 1498, Mismatches: 147, Indels: 105
0.86 0.08 0.06
Matches are distributed among these distances:
892 50 0.03
893 19 0.01
894 202 0.13
895 11 0.01
896 5 0.00
897 5 0.00
898 1 0.00
899 83 0.06
900 59 0.04
901 31 0.02
902 333 0.22
903 3 0.00
905 1 0.00
906 1 0.00
908 2 0.00
911 1 0.00
914 5 0.00
915 2 0.00
916 3 0.00
917 62 0.04
918 53 0.04
919 299 0.20
920 159 0.11
921 2 0.00
922 1 0.00
923 103 0.07
924 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (910 bp):
GCATACGAGTTCATTCCCAGTCTAAGATCGGACCACGAGGGTTACAGTAGCACATGCTGGGCTCG
GGCATGTGCTGGTGCCGCATTTTTCTTCTCAGGGCACCATCGGTGGAGCATCGTCGAGAACCTGA
CGCGGCATTGGGGTTCCGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAAGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
AAAAATACAAGGATAACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAA
TCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATAGAG
AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACGTAGTGCCCGCCCGCCCGTTCGTTTTGTCGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGATCAGACCGGACCGAGGGTTTCGGTAGCAGGATCGGCAGCATGCAGAGGGGAC
CTGGTCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCAGACTGAGCGCCCACACACTCGTTTCA
TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
Found at i:21610195 original size:26 final size:26
Alignment explanation
Indices: 21610159--21610211 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21610149 GTTGACTTAC
21610159 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21610185 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21610211 G
1 G
21610212 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21611285 original size:26 final size:26
Alignment explanation
Indices: 21611249--21611301 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21611239 GTTGACTTAG
*
21611249 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21611275 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21611301 G
1 G
21611302 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21613073 original size:26 final size:26
Alignment explanation
Indices: 21613033--21613085 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21613023 GTTCGCTTAG
21613033 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
21613059 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
21613085 G
1 G
21613086 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:21613154 original size:884 final size:879
Alignment explanation
Indices: 21611238--21613826 Score: 3623
Period size: 884 Copynumber: 2.9 Consensus size: 879
21611228 GGCGATCGAA
21611238 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
* * * *
21611303 TCGGACCGGAACGAGGGTTGCGGCAGTACTTACTGGGCTCGGGCATGTGCTGGT-TCTGCATTTT
66 TCGGACCGG-ACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTC-ACATTTT
* * *
21611367 TCTTCGTCGGGCATCACCGGAGCATCACCGGAGAACCTGACCGGC-AGTATTGGGGTTCCGACGA
129 TCTTCGTCGGG--GCA-C----CATCACCGGAGAACCTGACCGGCGA-CATT-GGGTTCCAACGA
* * *
21611431 TCGGGGGGGCCGGGGGGTGTGCGCACAAGATGTGCGATGGGTACTGCTACTTGGCCCTTATATTG
185 TC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
21611496 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
249 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
21611561 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
314 GTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
21611626 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
379 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATC
** * *
21611691 TAATAAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCCCGAAGCGCAAAAAGTTT
444 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGCAAAAAGTTT
** * *
21611756 TGAAAATCATGAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACGTCAAGGTTTAAGGGA
508 CAAAAATCATGAAAAATAGAAAACGA-------TGCCATGAAACTTCACGTGAAGGCTTAAGGGA
*
21611821 CTGATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
566 C-CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTA
**
21611886 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCACCTCTCTGGCCGGCGTAGTGCCA
630 AACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCA
* * * * * *
21611951 GCTCGCCCGCTCGCACGCTCGTTTCGTCAGTTGGCTTAGGCATATGGAGTTTATTCCCAGTCTAA
695 -CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * *
21612016 GATCAGACCAAACCGAGGGTTGCGACAGCAGGATCGGTAGCACGCAGAGGGGGACTCGATCGATC
759 GATC-GACCGGACCGAGGGTTGTGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGACCGATC
* **
21612081 CCTGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTACGTG
823 CCTGACTTGCACATCCCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTACGTG
* * *
21612138 GGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATCTGAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
* * * * * *
21612203 TGGGACTGGACCGAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACACTTTT
66 TCGGACCGGA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTT
* *
21612268 CTTCGTCGGGGCACCATCACCGGAGAACCTAACCGACGACATTAGGGTTCCAACGATCGGGGGGC
130 CTTCGTCGGGGCACCATCACCGGAGAACCTGACCGGCGACATT-GGGTTCCAACGATCGGGGGGC
21612333 CGAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
194 C--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
21612398 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
257 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
21612463 CCAGTAACCATTAAAGTGTCTAAAATGGGGAGACTTTTTTCAAATGGTCACAAAATCTTGTACAC
322 CCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
*
21612528 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCATGT
387 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGT
** *
21612593 TTGGGGCCAAAACTCCTTTTGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATG
452 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACCGCAAAAAGTTTCAAAAATC
*
21612658 ATGAAAAATAGAAAACGA-GCC-TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAGTTT
516 ATGAAAAATAGAAAACGATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
*
21612721 ACAAGCCATAAAAATGGCATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
581 ACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC
* * *
21612786 TATCGATCCGTGGCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCACCCACCCGCCCGCCC
646 TATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCACCCGCCCGCCCGCCC
* * * *
21612851 GCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAATATAAGATCGCACCGGACCAA
710 GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCG-ACCGGACCGA
* *
21612916 GGGTGGTGGCAGCAGGATTGGCAGCACGCAAAGGGGGACCCGACCGAT-CCTCGACTTGCACATC
774 GGGTTGTGGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGACCGATCCCT-GACTTGCACATC
** * ** *
21612980 CCGCCCCTCTGGTTGGTTGAGTGCCCGCACGCTCGTTTCGTG
838 CCGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCGTTACGTG
* *
21613022 GGTTCG-CTTAGGCATACGGAGCTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
1 GGTT-GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAG
* * * * *
21613086 ATCAGACCAGACTGGGGGTTGCGGCAGCACATGTTGGGCTCAGGCATGTGCTGGTGTCACATTTT
65 ATCGGACCGGAC-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTT
* * *
21613151 TCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGCGGTTCCAG
129 TCTTCGTCGGGGCACCA---T-----CA-C--CGGAGAACCTGACCGGCGACATTG-GGTTCCAA
* * * * *
21613216 CAATTGGGGGGCCGGGGGGTGTGCGCATATGATGTGCGATGGGTGCTGGTGCTTGGCTCTTATA-
182 CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
21613280 TGGCCCCCTATCCCTCATCAAACCTTGACAACTCACACCTCCTTAAAGAGCATTTGAGATTTTAC
247 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
21613345 AGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAA
312 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
21613410 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACA
377 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACA
** * *
21613475 TCTACCAAGTTTGGGGAGAAAAATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGT
442 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-GAACCGCAAAAAGT
21613540 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
506 TTCAAAAATCATGAAAAATAGAAAACGA-------TGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
21613605 GACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCTTGCAGAAATATGAAGATGTGCCT
564 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
* * * * *
21613670 AAACCCACCTACCACCCTATCTATCCACGGCTCGCGCATCCCGTCTCTCAGACCGGCGTAGTG--
629 AAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * * *
21613733 -CCCGCCCTCCCGCCTGCTCGTTTCATCGGTTGGCTCAGGCATACGGAGTTCATTCCCAGTCTAA
694 ACCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
21613797 GATCGGACTGGACCGAGGGTTGTGGCAGCA
759 GATC-GACCGGACCGAGGGTTGTGGCAGCA
21613827 CATCCTGGGC
Statistics
Matches: 1516, Mismatches: 139, Indels: 71
0.88 0.08 0.04
Matches are distributed among these distances:
883 5 0.00
884 393 0.26
885 30 0.02
886 3 0.00
887 1 0.00
891 1 0.00
892 280 0.18
893 87 0.06
894 323 0.21
895 38 0.03
897 82 0.05
898 3 0.00
899 1 0.00
900 126 0.08
901 143 0.09
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (879 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGA
TCGGACCGGACGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCACATTTTTC
TTCGTCGGGGCACCATCACCGGAGAACCTGACCGGCGACATTGGGTTCCAACGATCGGGGGGCCG
GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
TAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGG
GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGAACCGCAAAAAGTTTCAAAAATCATGAA
AAATAGAAAACGATGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
ATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCACCCGCCCGCCCGCCCGCTCGT
TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGACCGGACCGAGGGTTGT
GGCAGCAGGATCGGCAGCACGCAAAGGGGGACCCGACCGATCCCTGACTTGCACATCCCGCCCCT
CTGGCCGGCTGAACGCCCGCACGCTCGTTACGTG
Found at i:21614445 original size:715 final size:708
Alignment explanation
Indices: 21613059--21614535 Score: 2208
Period size: 715 Copynumber: 2.1 Consensus size: 708
21613049 CCCAGTCTAA
* * **
21613059 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGGGGGTTGCGGCAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATCCTGGG
* * * * *
21613124 CTCAGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCCTCGAAGCATCATCAGAGA
* * * * *
21613189 ACCTGACCGGCGGCATTGCGGTTCCAGCAATTGGGGGGCCGGGGGGTGTGCGCATATGATGTGCG
131 ACCTGACCGGCGACATTGCGGTTCCAACAATGGGGGGGCCGGGGGGTGTGCACACATGATGTGCG
* *
21613254 ATGGGTGCTGGTGCTTGGCTCTTATATGGCCCCCTATCCCTCATCAAACCTTGACAACTCACACC
196 ATGGGTGCTGGTACTTGGCCCTTATATGGCCCCCTATCCCTCATCAAACCTTGACAACTCACACC
* *
21613319 TCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATTGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGG
* * * *
21613384 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
326 GACACTTTTTTCAAATGGTCACAAAAACTCGTACACTTCAAATTTTTAGCTGAATTTTTTTGTGC
* * *
21613449 ATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGAGAAAAATCCTTCCAAAAAAATT
391 ATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTCGGGACAAAAATCCTTCCAAAAAAATT
* ** *
21613514 TTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
456 TTAAAAAACCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACC
* *
21613579 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTG
521 ATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTAGGAATTTACAAGCCATAAAAATGGAATTG
* * *
21613644 GCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCTATCCACGGCTCGCGCAT
586 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGAAT
* *
21613709 CCCGTCTCTCAGACCGGCGTAGTGCCCGCCCTCCCGC-CTGCTCGTTTCATCGGTTGGCTCAG
651 CCCATCTCTCAGACCGGCGTAGT----GCCCTCCCGCTC-ACTCGTTTCATCGGTTGGCTCAG
* ** *
21613771 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATCCTGGG
* *
21613836 CTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACT-GAAGCATCATCAGA
66 CTCAG-GCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATC-CTCGAAGCATCATCAGA
* * *
21613899 GAACCTGACTGGCGACATTGGGGTTCCAACGATCGGGGGGGCCAGGGGGGTGTGCACACATGATG
129 GAACCTGACCGGCGACATTGCGGTTCCAACAAT-GGGGGGGCC-GGGGGGTGTGCACACATGATG
* * *
21613964 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCTCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATA-TGGCCCCCTATCCCTCATCAAACCTTGACAACTC
*
21614029 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAA
21614094 ATGGGGACACTTTTTTCAAATGGTCACAAAAACTCGTACACTTCAAATTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAAACTCGTACACTTCAAATTTTTAGCTGAATTTTTT
* *
21614159 TGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTCGGGCCAAAACTCCTTCCAAAA
386 TGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTCGGGACAAAAATCCTTCCAAAA
* * ** * *
21614224 AATTTTTAAAAAACCCCAAACCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTTGTC
451 AAATTTTAAAAAACCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
21614289 TTACCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTAGGAATTTACAAGCCATAAAAATGG
516 TTACCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTAGGAATTTACAAGCCATAAAAATGG
* *
21614354 CATTGGCATGCAGAAATAT-ATAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
581 AATTGGCATGCAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTC
* ** * *
21614418 GCGAATCCCATCTCTTTAG-TTGGCGTAGTGCCCTTCCGCTCACTCGTTTCATCGGTTGGCTTAG
645 GCGAATCCCATCTC-TCAGACCGGCGTAGTGCCCTCCCGCTCACTCGTTTCATCGGTTGGCTCAG
* * *
21614482 TCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAG
21614536 TACGATCGGC
Statistics
Matches: 686, Mismatches: 71, Indels: 17
0.89 0.09 0.02
Matches are distributed among these distances:
711 78 0.11
712 138 0.20
713 9 0.01
714 48 0.07
715 410 0.60
716 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (708 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATCCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCCTCGAAGCATCATCAGAGA
ACCTGACCGGCGACATTGCGGTTCCAACAATGGGGGGGCCGGGGGGTGTGCACACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATGGCCCCCTATCCCTCATCAAACCTTGACAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAAACTCGTACACTTCAAATTTTTAGCTGAATTTTTTTGTGC
ATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTCGGGACAAAAATCCTTCCAAAAAAATT
TTAAAAAACCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTACC
ATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTAGGAATTTACAAGCCATAAAAATGGAATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGAAT
CCCATCTCTCAGACCGGCGTAGTGCCCTCCCGCTCACTCGTTTCATCGGTTGGCTCAG
Found at i:21615560 original size:26 final size:26
Alignment explanation
Indices: 21615524--21615576 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21615514 GTTGACTTAG
*
21615524 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21615550 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21615576 G
1 G
21615577 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21616445 original size:26 final size:26
Alignment explanation
Indices: 21616416--21616468 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21616406 CTTGACTTAG
**
21616416 GCATACGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21616442 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21616468 G
1 G
21616469 ATCAGACGAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21618090 original size:888 final size:883
Alignment explanation
Indices: 21613771--21619752 Score: 7577
Period size: 888 Copynumber: 6.7 Consensus size: 883
21613761 GTTGGCTCAG
* * *
21613771 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-AGACCGAGGGTTGTGGCAGCACATGCTGGG
* *
21613836 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACTGAAGCATCATCAGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--CA-T---GCATC--CGGAGA
* * * *
21613901 ACCTGACTGGCGACATTGGGGTTCCAACGATCGGGGGGGCCAGGGGGGTGTGCACACATGATGTG
121 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* *
21613966 CGATGGGTGCTGGTACTTGGCCCTTATATTGGGCTCCTATCCCTCATCAAACCTTGAGAACTCAC
184 CGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
21614031 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAT
* * * *
21614096 GGGGACACTTTTTTCAAATGGTCACAAAAACTCGTACACTTCAAATTTTTAGCTGAATTTTTTTG
312 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
21614161 TGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTCGGGCCAAAACTCCTTCC-AAAAA
377 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * ** * *
21614225 ATTTTTAAAAAACCCCAAACCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAACGAGTTGTCT
442 A-TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
21614290 TACCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTAGGAATTTACAAGCCATAAAAATGGC
506 TACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
21614355 ATTGGCATGCAGAAATAT-ATAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
571 ATTGGCACGCAGAAATATGA-AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** * * * *
21614419 CGAATCCCATCTCTTTAGTTGGCGTAGTGCCC-T-TCCGCTCACTCGTTTCATCGGTTGGCTTAG
635 CGCATCCCGTCTCTCT-GGCGGAGTAGTGCCCGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * * *
21614482 TCATGCGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGTACGATCGGCA
699 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACA
* * * *
21614547 GCATGTAGAGTGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCGC
764 GCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
21614612 CCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAA
829 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
21614667 GCATACGGAGTTCATTCCCAGTCGAAGATTAGACCAGACTGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * **
21614732 CTAGGGCATGTGCAGGTGCCGCATTTTTCTTCCCCGGGGCACCATTGCCATTTTATCGCCGGAGA
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA-TG-C-----AT--CCGGAGA
* * * * * * *
21614797 ACTTAATCGGCGGCATTGGGGTTCCGACTATTGGGGGGGCC-GGGGGTGTACACACATGATGTGC
121 ACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
21614861 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTCGTCAAACCTCGAGAACTCACA
185 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACA
* * *
21614926 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCAAGTAGCCATTACAGTG-CTTAAAAT
249 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-T-AAAT
* * * * *
21614990 GGGGACACTTTTTTTGAAATGGTCACAAAATCTTGTACATTTTGACTTTTTAGCTGAACTTTTTT
312 GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
21615055 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
376 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
21615120 AA-TTATAAAAAATCTCGAACCTTAAAAAGTTTCAAAAATC--G-----T-GAAAACGAGTCGTC
441 AATTTA-AAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
21615176 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAGTGG
505 TTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
21615241 CATTGGCACGTAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCGATCCACGGCTTG
570 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
21615306 CGCATCCCGTGTCTCTGGCCGA-CA-T---CGTGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
635 CGCATCCCGTCTCTCTGGCGGAGTAGTGCCCGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
* * ** *
21615366 CATACGAAGTTCATTCCCAGTCTAAGATCAGA-TAGGACCGAGGGTTGTGGCAGTAGGATCGACA
700 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACCGAGGGTTGCAGCAGCAGGATCGACA
* * * * * *
21615430 GCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCACATCCCACCCCTCTGGCCGACTGAGCGC
764 GCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * *
21615495 CCGCGCACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
829 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
21615550 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTT-TCGACAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGT-GGCAGCACATGCTGG
* *
21615614 GTTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCAGGAGCATTGCCGAAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-------GCA-T-CCGGAG
** * * * *
21615679 AACCCAACCGGCGGCACT-GGGTTTCGGCGATCGGGGAGGCCGGGGGGTGTACGCACATGATGTG
120 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTG
* * *
21615743 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCACTGTCCCTCATCAAACCTCAAGAACTCGC
184 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTCAC
* *
21615808 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAATGTGTCTGAAAT
248 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAAT
* *
21615873 GGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTG
312 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
21615938 TGCGTGCCAACAAAAATACAAGGATTATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
377 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * **
21616003 ATCTT-AAAAAATTCCAAACCAG-AAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
442 AT-TTAAAAAAATCCCGAACC-GTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
21616066 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
505 TTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
21616131 CATTGGCACGTAGAAATATGAAGATATGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTG
570 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
21616196 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC-T-CCCTCCCGCTCGATTCATCGGTTGGCTTAG
635 CGCATCCCGTCTCTCTGG-CGGAGTAGTGCCCGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAG
* * * **
21616259 GCATACGGAGTTCATTCCCAG-CTAAGATCAGACCAAACCGAGTGTTG-AGGCAGCAGGATTGGT
699 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCA-GCAGCAGGATCGAC
* * ** * * * * *
21616322 AGCACACAGAGGGGGACTCGATCGATCCCCGGCTTACGCAT-CCGCCCCTCTGGTCGGCTAAGTG
763 AGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * **
21616386 CCCGCATGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCGTAGTCTAA
828 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
21616442 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACGAGATCGAGGGTT-TCGACAGCACATGTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-AGACCGAGGGTTGT-GGCAGCACATGCTGG
** *
21616506 GCTCAAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCAACTCCGGAG
64 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T----GC-A-TCCGGAG
* * *
21616571 AACTTGACCGGCGGCATGGGGGTTCCAACGATCGGAGGGGCCGAGGGGGGTGTGCGCACATGATG
120 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGCC--GGGGGGTGTGCGCACATGATG
*
21616636 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
182 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTC
*
21616701 ACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
246 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AA
*
21616766 ATGGGGACACTTTTTTCAAATGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
310 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
21616831 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCTG-AA
375 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
21616895 AAATTTAAAAAAATCCTGAACCATAAAAGGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC
440 AAATTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
21616960 TTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
505 TTACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
21617025 CATTGGCACACAGAAATATGAAGATGTTCCCAAACCCACCTACCAACCTATCGATCCACGGCTTG
570 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
21617090 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCATCGATGGGCTT
635 CGCATCCCGTCTCTCTGGCGGA-GTAGTGCCCG--TGCCCGCCCGCTCGTTTCATCGGTTGGCTT
*
21617155 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAACTGAGGGTTGCAGCAGCAGGATCG
697 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCAGCAGCAGGATCG
* * * *
21617219 ACAGCACGTATAGGGGGACGCGGCCGATCCCCTG-CTTGCGCATCCCGCCCCTCTGGCTGGCTGA
761 ACAGCACGCAGAGGGGGACCCGGCCGATCCCC-GACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
21617283 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGGATATGGAGTTCATTCCCAGTCTAA
825 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
21617342 GCATATGGAGTTCATTCCCAGTCAAAGATCCGATCAGACCAAGGGTTGTGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * *
21617407 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGAGGCACCAT-CA-CCGGAGAACCTGATCG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATGCATCCGGAGAACCTGACCG
* ** * *
21617470 ACGGCATTGGGGTTCCGGTGATCGAGGGGGCCAGGGGGGTGTGCGCACTTGATGTGCGATGGTTG
130 GCGGCATTGGGGTTCCGACGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
21617535 CTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACGTCGAGAACTCACACCCCCTTAA
193 CTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
21617600 AGAGCATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTACAATGGGGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA-AATGGGGACACTT
*
21617665 TTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCATGCCAA
322 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * *
21617730 -AAAAAAACCAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTAAAAA
387 CAAAAATA-CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAA
* *
21617794 AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTACCATGAAA
451 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTACCATGAAA
* * *
21617859 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCTATAAAAATGGCATTGGCATGC
516 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
**
21617924 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTATC
581 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
21617989 TCTCTGGCTGGAGTAGTGCCCGTCCGCCCGCCCGCTCGTTTCGTCGATTGGCTTAGGCATACAGA
646 TCTCTGGC-GGAGTAGTGCCCGT--GCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGA
* ** * * ** * *
21618054 GTTCATTCCCAGTCTCAGATTGGACTAGACTGAGGGTTGTGGCAGTAGGATCGACAGCACACAGA
708 GTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGA
* *
21618119 GGGGGACCCGGCCGATCCCCGACTTGTGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCT
773 GGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* *
21618184 CGTTTCGTGGGTTGACTTAGGCATATGGAGTTCATTTCCAG--T--
838 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
21618226 -C-TA---AG---A-T--C-G-----GATC-G---GACCGAGGGTTACGGCAGCACATGCTAGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTGTGGCAGCACATGCTGGGC
* * * *
21618270 TCGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGAACCATCGCCGGAGCATCGTCTGAGAA
66 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT-------GCATC--CGGAGAA
* ** * *
21618335 CCTGACCGGTGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGTGGTGTGC-AAAATGATGTGC
122 CCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGG-GGTGTGCGCACATGATGTGC
* *
21618399 GATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCTTCAAACCTCGAGAACTCACA
185 GATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
21618464 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTTCTGCCAATAGCCATTAAAGTGTCTAAAATG
249 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATG
* *
21618529 GGGACACTTTTTTCAAATGGTCAGAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
313 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
21618594 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAA
378 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
21618659 TTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTA
443 TTTAAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTA
*
21618724 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCAT
508 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* ** * *
21618789 TAGCACATAGAAATATGAAGATGTGCCTAAACGCACCTACCACCCTATCGATCCGCGGCTTGCGC
573 TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * ** *
21618854 TTCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCCACCCGCCCGTCCACTCGTTTCGTCGGTTGGCT
638 ATCCCGTCTCTCTGG-CGGAGTAGTGCCCG--TGCCCGCCCG----CTCGTTTCATCGGTTGGCT
* * * * ** * * *
21618919 TAGGTATACTGAGTTCATTCCCAGTCTAAGATC-GCACCAGTCTGAGCATTACGGCAGCTGGATC
696 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCAGCAGCAGGATC
* * * * ** ** *
21618983 GGCAGCATGAAAAGGGGGACCTAGCCGATCCCCGACTTGCGCATCTTGCCCCTCTGGCCGGCTAA
760 GACAGCACGCAGAGGGGGACCCGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
21619048 GCGCCCGCACGCTCGTTTCATTGGTTGACTAAGGCATATGGAGTTCATTCCCAGTCTAA
825 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * **
21619107 GCATACGGAGTTCATT-CCAGTCTAAGATTGGACCGGACTAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * *
21619171 CTCGGGCATGCGCTGGTGCCGCATTTTTCTTC-AC--CGAAGCAT-CA-CCGGAGAACCTGACCG
65 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATGCATCCGGAGAACCTGACCG
* * * *
21619231 ACGGCATTAGGGTTCCGACGATCGGGGTGCCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTG
130 GCGGCATTGGGGTTCCGACGATCGGGG-GGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
21619296 CTGGTACTTGGCCCTTATATTGGCCCCTATCCCTAATCAAACCTTGAGAACTCACACCCCCTTAA
193 CTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * * *
21619361 AGAGCATTTGATATTTTATAGGTTTGCTGCCAGTACCCATTAAAGTGCCTGAAATGGTGACACTT
258 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGACACTT
* *
21619426 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTGGCAA
322 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * ** *
21619491 AAAAAATACAAGGATCACGTCTAACAAGTTTGGGTTCAAAACTCCTTCCGAAAAAATTTTAAAAA
387 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAA
* * * *
21619556 ATCCCGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCCCTTGAA
452 ATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT--ACCATGAA
* * *
21619621 ACTTCACGTGAAGGCTTAAAGGCCCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACG
515 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
21619686 CAAAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCATGGCTTGCGCATCACGT
580 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
21619751 CT
645 CT
21619753 AGATCCGGGG
Statistics
Matches: 4476, Mismatches: 472, Indels: 282
0.86 0.09 0.05
Matches are distributed among these distances:
862 63 0.01
866 1 0.00
867 4 0.00
870 2 0.00
871 1 0.00
872 42 0.01
873 469 0.10
874 9 0.00
875 1 0.00
876 2 0.00
877 171 0.04
879 3 0.00
881 6 0.00
882 160 0.04
883 448 0.10
884 7 0.00
885 1 0.00
886 12 0.00
887 354 0.08
888 764 0.17
889 87 0.02
890 284 0.06
891 8 0.00
892 196 0.04
893 100 0.02
894 401 0.09
895 392 0.09
896 141 0.03
897 6 0.00
898 49 0.01
899 71 0.02
900 165 0.04
901 3 0.00
902 53 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (883 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACAGACCGAGGGTTGTGGCAGCACATGCTGGGC
TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATGCATCCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGA
GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGACACTTTTTT
CAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCC
CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTACCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
GGCGGAGTAGTGCCCGTGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAGACCGAGGGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACC
CGGCCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:21619132 original size:25 final size:26
Alignment explanation
Indices: 21619076--21619132 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
21619066 CATTGGTTGA
*
21619076 CTAAGGCATATGGAGTTCATTCCCAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
21619103 CTAAGCATACGGAGTTCATT-CCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
21619128 CTAAG
1 CTAAG
21619133 ATTGGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
25 10 0.34
26 15 0.52
27 4 0.14
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:21620306 original size:57 final size:57
Alignment explanation
Indices: 21620217--21620741 Score: 714
Period size: 57 Copynumber: 9.0 Consensus size: 57
21620207 TCTTGTGTGG
* *
21620217 GGAAAATTGGTACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
* * **
21620274 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTGGAAA-TTT-ATTTTTAA
* * *
21620334 GGAAAATTGATACTTTCATCTTTTCC-CTAAAAATATTTTTTGAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTGGAAA-TTT-ATTTTTAA
* *
21620393 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTTTTGGAAA-TTTATTTTTAA
*
21620452 GGAAAATTGATACCTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
* **
21620509 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACAGTTTTTT-GAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTGGAAA-TTT-ATTTTTAA
* *
21620568 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAACTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
* *
21620625 GGAAAATTGATACTTTCAAATTTT-CTCGAAAAATATTTTTTAGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTGGAAATTTATTTTTAA
21620682 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGGAAAATTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTTGG-AAATTT-ATTTTTA
21620742 TTTAAAGAAA
Statistics
Matches: 419, Mismatches: 33, Indels: 28
0.87 0.07 0.06
Matches are distributed among these distances:
56 3 0.01
57 166 0.40
58 40 0.10
59 145 0.35
60 58 0.14
61 7 0.02
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
Found at i:21620570 original size:116 final size:115
Alignment explanation
Indices: 21620217--21620741 Score: 741
Period size: 116 Copynumber: 4.5 Consensus size: 115
21620207 TCTTGTGTGG
* *
21620217 GGAAAATTGGTACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATT
* *
21620282 GATACTTTCAACTTTTCCTAAAAAATATTTTTTTTGAAACTTTGATTTCCAA
66 GATACTTTCAACTTTTCCTCAAAAACA-TTTTTTTGAAA-TTTGATTTCCAA
* * *
21620334 GGAAAATTGATACTTTCATCTTTTCC-CTAAAAATATTTTTTGAAAATTTTGATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTGGAAA-TTT-ATTTTTAAGGAAA
* * **
21620398 ATTGATACTTTCAACTTTTCCTCAAAAATCCTTTTTTTGAAATTTTATTTTTAA
63 ATTGATACTTTCAACTTTTCCTCAAAAA-CATTTTTTTGAAATTTGATTTCCAA
*
21620452 GGAAAATTGATACCTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATT
*
21620517 GATACTTTCAACTTTTCCTCAAAAACAGTTTTTTGAAACTTTGATTTCCAA
66 GATACTTTCAACTTTTCCTCAAAAACATTTTTTTGAAA-TTTGATTTCCAA
* *
21620568 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAACTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATT
* * * **
21620633 GATACTTTCAAATTTT-CTCGAAAAATATTTTTTAGAAATTT-ATTTTTAA
66 GATACTTTCAACTTTTCCTC-AAAAACATTTTTTTGAAATTTGATTTCCAA
21620682 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGGAAAATTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA--TTTTTTGG-AAATTT-ATTTTTA
21620742 TTTAAAGAAA
Statistics
Matches: 367, Mismatches: 30, Indels: 21
0.88 0.07 0.05
Matches are distributed among these distances:
114 41 0.11
115 17 0.05
116 149 0.41
117 49 0.13
118 60 0.16
119 51 0.14
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.45
Consensus pattern (115 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAAGGAAAATT
GATACTTTCAACTTTTCCTCAAAAACATTTTTTTGAAATTTGATTTCCAA
Found at i:21620769 original size:17 final size:16
Alignment explanation
Indices: 21620759--21620816 Score: 55
Period size: 17 Copynumber: 3.4 Consensus size: 16
21620749 AAAATAGAAT
*
21620759 AATAAAAAAAAATAAAA
1 AATAAAAAATAA-AAAA
21620776 AATAAAAAATAAAGAAA
1 AATAAAAAATAAA-AAA
*
21620793 AGTAAAACAA-AAATAAA
1 AATAAAA-AATAAA-AAA
21620810 AATAAAA
1 AATAAAA
21620817 TTAAGATAAA
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
16 1 0.03
17 32 0.91
18 2 0.06
ACGTcount: A:0.83, C:0.02, G:0.03, T:0.12
Consensus pattern (16 bp):
AATAAAAAATAAAAAA
Found at i:21620775 original size:7 final size:7
Alignment explanation
Indices: 21620756--21620788 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
21620746 AAGAAAATAG
*
21620756 AATAATA
1 AATAAAA
21620763 AA-AAAA
1 AATAAAA
21620769 AATAAAA
1 AATAAAA
21620776 AATAAAA
1 AATAAAA
21620783 AATAAA
1 AATAAA
21620789 GAAAAGTAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
6 5 0.21
7 19 0.79
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (7 bp):
AATAAAA
Found at i:21620793 original size:11 final size:10
Alignment explanation
Indices: 21620759--21620817 Score: 55
Period size: 11 Copynumber: 5.3 Consensus size: 10
21620749 AAAATAGAAT
21620759 AATAAAAAAA
1 AATAAAAAAA
21620769 AATAAAAAATA
1 AATAAAAAA-A
*
21620780 AAAAATAAAGAA
1 AATAA-AAA-AA
21620792 AAGTAAAACAAA
1 AA-TAAAA-AAA
21620804 AATAAAAATAA
1 AATAAAAA-AA
21620815 AAT
1 AAT
21620818 TAAGATAAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
10 10 0.24
11 15 0.37
12 12 0.29
13 4 0.10
ACGTcount: A:0.81, C:0.02, G:0.03, T:0.14
Consensus pattern (10 bp):
AATAAAAAAA
Found at i:21620825 original size:17 final size:16
Alignment explanation
Indices: 21620803--21620842 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
21620793 AGTAAAACAA
*
21620803 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
21620819 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
21620836 AAATAAA
1 AAATAAA
21620843 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:21621854 original size:6 final size:6
Alignment explanation
Indices: 21621843--21621979 Score: 61
Period size: 6 Copynumber: 22.3 Consensus size: 6
21621833 ATTACAAAAA
* * *
21621843 AATAAT AATAAT AATAAT AA-AGATT TATACAT ATTAAT AAATAAGT AAATAGCT
1 AATAAT AATAAT AATAAT AATA-A-T AATA-AT AATAAT -AATAA-T -AATA-AT
* *
21621897 AA-AAT AAAAAT -ATAA- AATATAT ATATAA- AATAAT AATAAT AAAAAT
1 AATAAT AATAAT AATAAT AATA-AT A-ATAAT AATAAT AATAAT AATAAT
* * * * *
21621943 AA-AAT AAAAAT AAAAAT AAAAAT AAAAAT AAAAAT AA
1 AATAAT AATAAT AATAAT AATAAT AATAAT AATAAT AA
21621980 AAATGAAAAT
Statistics
Matches: 109, Mismatches: 9, Indels: 26
0.76 0.06 0.18
Matches are distributed among these distances:
5 19 0.17
6 65 0.60
7 13 0.12
8 12 0.11
ACGTcount: A:0.69, C:0.01, G:0.02, T:0.27
Consensus pattern (6 bp):
AATAAT
Found at i:21621980 original size:6 final size:6
Alignment explanation
Indices: 21621897--21622018 Score: 129
Period size: 6 Copynumber: 19.7 Consensus size: 6
21621887 GTAAATAGCT
* *
21621897 AAAATA AAAATA TAAAATA TATATATAA AATAATA ATAATA AAAAT- AAAATA
1 AAAATA AAAATA -AAAATA -A-AAAT-A AA-AATA AAAATA AAAATA AAAATA
* *
21621949 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATG AAAATG AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
** *
21621997 AAAACG AAAATA AAATTA AAAA
1 AAAATA AAAATA AAAATA AAAA
21622019 AAACATATAC
Statistics
Matches: 99, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
5 5 0.05
6 76 0.77
7 11 0.11
8 6 0.06
9 1 0.01
ACGTcount: A:0.76, C:0.01, G:0.02, T:0.20
Consensus pattern (6 bp):
AAAATA
Found at i:21622311 original size:6 final size:6
Alignment explanation
Indices: 21622300--21622424 Score: 69
Period size: 6 Copynumber: 21.2 Consensus size: 6
21622290 GTAAATAGCT
* * * * * *
21622300 AAAATA AAAATA AAAGAAA AAAATA TATATA TATAA-A ATAATA ATAATA
1 AAAATA AAAATA AAA-ATA AAAATA AAAATA -AAAATA AAAATA AAAATA
* * * * * * *
21622349 AAAAT- TAAAT- TAAATT AAATTA AAATTA AAATTA AAAATG AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
**
21622395 AAAACG AAAAT- AAAATA AAAATA AAAATA A
1 AAAATA AAAATA AAAATA AAAATA AAAATA A
21622425 CCATATACTT
Statistics
Matches: 96, Mismatches: 18, Indels: 10
0.77 0.15 0.08
Matches are distributed among these distances:
5 18 0.19
6 72 0.75
7 6 0.06
ACGTcount: A:0.73, C:0.01, G:0.02, T:0.24
Consensus pattern (6 bp):
AAAATA
Found at i:21622314 original size:5 final size:5
Alignment explanation
Indices: 21622299--21622420 Score: 50
Period size: 5 Copynumber: 22.0 Consensus size: 5
21622289 AGTAAATAGC
*
21622299 TAAAA TAAAAA TAAAA GAAAA -AAATA TATATATA TAAAA TAATAA TAATAA
1 TAAAA T-AAAA TAAAA TAAAA TAAA-A TA-A-A-A TAAAA TAA-AA TAA-AA
* * * *
21622350 -AAAT TAAAT TAAAT TAAAT TAAAA TTAAAA TTAAAAA TGAAAA TAAAAA
1 TAAAA TAAAA TAAAA TAAAA TAAAA -TAAAA -T-AAAA T-AAAA T-AAAA
*
21622399 CGAAAA TAAAA TAAAAA TAAAA
1 -TAAAA TAAAA T-AAAA TAAAA
21622421 ATAACCATAT
Statistics
Matches: 99, Mismatches: 7, Indels: 22
0.77 0.05 0.17
Matches are distributed among these distances:
4 4 0.04
5 43 0.43
6 41 0.41
7 6 0.06
8 5 0.05
ACGTcount: A:0.72, C:0.01, G:0.02, T:0.25
Consensus pattern (5 bp):
TAAAA
Found at i:21622357 original size:21 final size:21
Alignment explanation
Indices: 21622301--21622422 Score: 70
Period size: 23 Copynumber: 5.5 Consensus size: 21
21622291 TAAATAGCTA
*
21622301 AAATAAAAA-TAAAAGAAAA-
1 AAATAAAAATTAAAATAAAAT
*
21622320 AAATATATATATATAAAATAATAAT
1 AAATA-A-AAAT-TAAAATAA-AAT
* *
21622345 -AATAAAAATTAAATTAAATT
1 AAATAAAAATTAAAATAAAAT
*
21622365 AAATTAAAATTAAAATTAAAAAT
1 AAATAAAAATTAAAA-T-AAAAT
**
21622388 GAAAATAAAAACGAAAATAAAAT
1 --AAATAAAAATTAAAATAAAAT
21622411 AAAAATAAAAAT
1 --AAATAAAAAT
21622423 AACCATATAC
Statistics
Matches: 79, Mismatches: 13, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
19 5 0.06
20 3 0.04
21 21 0.27
22 4 0.05
23 27 0.34
24 7 0.09
25 12 0.15
ACGTcount: A:0.72, C:0.01, G:0.02, T:0.25
Consensus pattern (21 bp):
AAATAAAAATTAAAATAAAAT
Found at i:21622432 original size:404 final size:404
Alignment explanation
Indices: 21621683--21622489 Score: 1336
Period size: 404 Copynumber: 2.0 Consensus size: 404
21621673 TCCCATTCAC
*
21621683 AATGGGATTCTTCAACTTTCAATCACAGCCATGAAAAAAAGAAAACAAAAAATAATAATACTAAT
1 AATGGGATTCTTCAACTTTCAATCACAGCCATCAAAAAAAGAAAACAAAAAATAATAATACTAAT
* *
21621748 CAGATAATCGGGAAAAAAATCAGATAAAATTAATAGATAATTTAAAAAAATAATAAAAAATAAAA
66 CAGATAATCGAGAAAAAAATCAGATAAAATTAACAGATAATTTAAAAAAATAATAAAAAATAAAA
*
21621813 TAAGAGAAACCCAAAAATATATTACAAAAAAATAATAATAATAATAATAAAGATTTATACATATT
131 TAAGAGAAACCCAAAAATATATTACAAAAAAATAATAATAATAATAATAAAGATATATACATATT
* * *
21621878 AATAAATAAGTAAATAGCTAAAATAAAAATATAAAATATATATATAAAATAATAATAATAAAAAT
196 AATAAATAAGTAAATAGCTAAAATAAAAATAAAAAAAAAATATATAAAATAATAATAATAAAAAT
* *
21621943 AAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATGAAAATGAAAATAAAAACGAAAAT
261 AAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATGAAAATAAAAACAAAAACGAAAAT
*
21622008 AAAATTAAAAAAAACATATACTTACCTATTTGGGCCAGGCCCAATTGATCCGGGCCTGGACCAAA
326 AAAAATAAAAAAAACATATACTTACCTATTTGGGCCAGGCCCAATTGATCCGGGCCTGGACCAAA
21622073 TTGGGTGTCTACAA
391 TTGGGTGTCTACAA
21622087 AATGGGATTCTTCAACTTTCAATCACAGCCATCAAAAAAAGAAAACAAAAAATAATAATACTAAT
1 AATGGGATTCTTCAACTTTCAATCACAGCCATCAAAAAAAGAAAACAAAAAATAATAATACTAAT
21622152 CAGATAATCGAGAAAAAAATCAGATAAAATTAACAGATAATTTAAAAAAATAATAAAAAATAAAA
66 CAGATAATCGAGAAAAAAATCAGATAAAATTAACAGATAATTTAAAAAAATAATAAAAAATAAAA
*
21622217 TAAGATAAACCCAAAAATATATTAC-AAAAAATAATAATAATAATAATAAAGATATATACATATT
131 TAAGAGAAACCCAAAAATATATTACAAAAAAATAATAATAATAATAATAAAGATATATACATATT
* *
21622281 AATAAATAAGTAAATAGCTAAAATAAAAATAAAAGAAAAAAATATATATATATAA-AATAATAAT
196 AATAAATAAGTAAATAGCTAAAATAAAAAT-AAA-AAAAAAATATATA-AAATAATAATAATAAA
* * * * * * * *
21622345 AATAAAA-ATTAAAT-TAAATTAAATTAAAATTAAAATTAAAAATGAAAATAAAAACGAAAA-TA
258 AATAAAATA-AAAATAAAAATAAAAATAAAAATAAAAATAAAAATGAAAATAAAAACAAAAACGA
*
21622407 AAATAAAAATAAAAATAACCATATACTTACCTATTTGGGCCAGGCCCAATTGATCCGGGCCTGGA
322 AAATAAAAATAAAAA-AAACATATACTTACCTATTTGGGCCAGGCCCAATTGATCCGGGCCTGGA
21622472 CCAAATTGGGTGTCTACA
386 CCAAATTGGGTGTCTACA
21622490 GCTGCCCCTC
Statistics
Matches: 376, Mismatches: 22, Indels: 10
0.92 0.05 0.02
Matches are distributed among these distances:
403 83 0.22
404 258 0.69
405 30 0.08
406 5 0.01
ACGTcount: A:0.58, C:0.10, G:0.08, T:0.24
Consensus pattern (404 bp):
AATGGGATTCTTCAACTTTCAATCACAGCCATCAAAAAAAGAAAACAAAAAATAATAATACTAAT
CAGATAATCGAGAAAAAAATCAGATAAAATTAACAGATAATTTAAAAAAATAATAAAAAATAAAA
TAAGAGAAACCCAAAAATATATTACAAAAAAATAATAATAATAATAATAAAGATATATACATATT
AATAAATAAGTAAATAGCTAAAATAAAAATAAAAAAAAAATATATAAAATAATAATAATAAAAAT
AAAATAAAAATAAAAATAAAAATAAAAATAAAAATAAAAATGAAAATAAAAACAAAAACGAAAAT
AAAAATAAAAAAAACATATACTTACCTATTTGGGCCAGGCCCAATTGATCCGGGCCTGGACCAAA
TTGGGTGTCTACAA
Found at i:21622731 original size:12 final size:12
Alignment explanation
Indices: 21622714--21622742 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
21622704 AGGCAACCCC
21622714 TTTTTTGTTTTT
1 TTTTTTGTTTTT
21622726 TTTTTTGTTTTT
1 TTTTTTGTTTTT
21622738 TTTTT
1 TTTTT
21622743 AAAGCTCCTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (12 bp):
TTTTTTGTTTTT
Found at i:21622805 original size:42 final size:42
Alignment explanation
Indices: 21622746--21623124 Score: 588
Period size: 41 Copynumber: 9.1 Consensus size: 42
21622736 TTTTTTTAAA
*
21622746 GCTCCTCTAAATAGAGGCACCACGACTTTGAAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
21622788 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* *
21622830 GCTCCTCTAAATAGAGGCAACACGACTTTGAAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
21622871 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* *
21622912 GCTCCTCTAAGCAGAGGCACCACAACTTTGAAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* * *
21622953 GCTCCTCTAAACAGAGGCACCACCACTTAG-GAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
* **
21622994 GCTCCTCTAAACAGAAGCACCATAACTTTGAAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
21623035 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
*
21623077 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
21623119 GCTCCT
1 GCTCCT
21623125 TGACAATCAT
Statistics
Matches: 306, Mismatches: 26, Indels: 10
0.89 0.08 0.03
Matches are distributed among these distances:
40 6 0.02
41 170 0.56
42 130 0.42
ACGTcount: A:0.38, C:0.24, G:0.16, T:0.22
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGAAAAAGTAAATT
Found at i:21624411 original size:28 final size:26
Alignment explanation
Indices: 21624366--21624440 Score: 80
Period size: 27 Copynumber: 2.8 Consensus size: 26
21624356 TTTGAATCTC
*
21624366 CTTTTTTCATTTTC-TCATTTCTTTCTT
1 CTTTTTTCTTTTTCATCATTT-TTTC-T
*
21624393 TTTTTTTCTTTTTCATCATCTTTTTCT
1 CTTTTTTCTTTTTCATCAT-TTTTTCT
*
21624420 CTTTTCTCATTTTTCATCATT
1 CTTTTTTC-TTTTTCATCATT
21624441 GTTGATATCT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 20 0.49
28 19 0.46
29 2 0.05
ACGTcount: A:0.09, C:0.21, G:0.00, T:0.69
Consensus pattern (26 bp):
CTTTTTTCTTTTTCATCATTTTTTCT
Found at i:21624418 original size:18 final size:17
Alignment explanation
Indices: 21624394--21624433 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
21624384 TTCTTTCTTT
21624394 TTTTTTCT-TTTTCATCA
1 TTTTTTCTCTTTTC-TCA
21624411 TCTTTTTCTCTTTTCTCA
1 T-TTTTTCTCTTTTCTCA
21624429 TTTTT
1 TTTTT
21624434 CATCATTGTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
17 5 0.24
18 11 0.52
19 5 0.24
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTTTCTCTTTTCTCA
Found at i:21624767 original size:8 final size:9
Alignment explanation
Indices: 21624752--21624784 Score: 66
Period size: 9 Copynumber: 3.7 Consensus size: 9
21624742 CATGTGTGGC
21624752 ATTTTTTTT
1 ATTTTTTTT
21624761 ATTTTTTTT
1 ATTTTTTTT
21624770 ATTTTTTTT
1 ATTTTTTTT
21624779 ATTTTT
1 ATTTTT
21624785 GAGACCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:21628314 original size:57 final size:58
Alignment explanation
Indices: 21628250--21628660 Score: 551
Period size: 59 Copynumber: 7.0 Consensus size: 58
21628240 TCTTGTGTAG
*
21628250 GGAAAATTGGTACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTGATTTTTAA
*
21628307 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGGAAATTT-ATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTGATTTTTAA
* ** * *
21628364 GAAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTTTGAAACTTTGATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTTGAAAATTTGATTTTTAA
* * *
21628424 GGAAAATTGATACTTTCATCTTTTCCCTAAAAATATTTTTTGAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAA-TTTGATTTTTAA
*
21628483 GGAAAATTGATACTTTCAACTTTTCCCCAAAAACCCT-TTTTTTG-AAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAA---TATTTTTTGAAAATTTGATTTTTAA
* * **
21628542 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA-TTTTTTGAAAATTTGATTTTTAA
* *
21628601 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCCCAAAAATA--TTTTTT-GAAAATTTGATTTTTA
21628661 TTTAAAGAAA
Statistics
Matches: 315, Mismatches: 27, Indels: 20
0.87 0.07 0.06
Matches are distributed among these distances:
56 1 0.00
57 87 0.28
58 17 0.05
59 141 0.45
60 48 0.15
61 20 0.06
62 1 0.00
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTGATTTTTAA
Found at i:21628700 original size:6 final size:6
Alignment explanation
Indices: 21628668--21628737 Score: 56
Period size: 6 Copynumber: 11.5 Consensus size: 6
21628658 TTATTTAAAG
* *
21628668 AAAATA GAATAATA AAAA-A ATAAATA AAAATA AAAA-A ATAAAGA AAAGT-
1 AAAATA -AA-AATA AAAATA A-AAATA AAAATA AAAATA A-AAATA AAAATA
*
21628717 AAAACA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAA
21628738 TTAAGATAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
5 7 0.13
6 33 0.63
7 8 0.15
8 4 0.08
ACGTcount: A:0.80, C:0.01, G:0.04, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:21628701 original size:18 final size:18
Alignment explanation
Indices: 21628678--21628737 Score: 86
Period size: 18 Copynumber: 3.4 Consensus size: 18
21628668 AAAATAGAAT
21628678 AATAAAAAAATAAATAAA
1 AATAAAAAAATAAATAAA
*
21628696 AATAAAAAAATAAAGAAA
1 AATAAAAAAATAAATAAA
* *
21628714 AGTAAAACAA-AAATAAA
1 AATAAAAAAATAAATAAA
21628731 AATAAAA
1 AATAAAA
21628738 TTAAGATAAA
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
17 12 0.32
18 25 0.68
ACGTcount: A:0.82, C:0.02, G:0.03, T:0.13
Consensus pattern (18 bp):
AATAAAAAAATAAATAAA
Found at i:21628708 original size:29 final size:29
Alignment explanation
Indices: 21628675--21628732 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
21628665 AAGAAAATAG
*
21628675 AATAATAAAAAAAT-AAATAAAAATAAAAA
1 AATAA-AAAAAAATAAAACAAAAATAAAAA
* *
21628704 AATAAAGAAAAGTAAAACAAAAATAAAAA
1 AATAAAAAAAAATAAAACAAAAATAAAAA
21628733 TAAAATTAAG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 6 0.24
29 19 0.76
ACGTcount: A:0.81, C:0.02, G:0.03, T:0.14
Consensus pattern (29 bp):
AATAAAAAAAAATAAAACAAAAATAAAAA
Found at i:21628737 original size:11 final size:11
Alignment explanation
Indices: 21628683--21628748 Score: 55
Period size: 11 Copynumber: 5.9 Consensus size: 11
21628673 AGAATAATAA
21628683 AAAAAT-AAAT
1 AAAAATAAAAT
*
21628693 AAAAATAAAAA
1 AAAAATAAAAT
*
21628704 AATAAAGAAAAGT
1 AA-AAATAAAA-T
21628717 AAAACA-AAAAT
1 AAAA-ATAAAAT
21628728 AAAAATAAAAT
1 AAAAATAAAAT
* *
21628739 TAAGATAAAA
1 AAAAATAAAA
21628749 AGAATATTAA
Statistics
Matches: 46, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
10 7 0.15
11 23 0.50
12 13 0.28
13 3 0.07
ACGTcount: A:0.79, C:0.02, G:0.05, T:0.15
Consensus pattern (11 bp):
AAAAATAAAAT
Found at i:21628746 original size:17 final size:16
Alignment explanation
Indices: 21628724--21628763 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
21628714 AGTAAAACAA
*
21628724 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
21628740 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
21628757 AAATAAA
1 AAATAAA
21628764 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:21629924 original size:5 final size:5
Alignment explanation
Indices: 21629822--21629916 Score: 86
Period size: 5 Copynumber: 18.0 Consensus size: 5
21629812 AGTAAATAGC
* * *
21629822 TAAAA TAAAAA TAAAA GAAAA -AATA TATAAA TAATAA TAATA -AAAA
1 TAAAA T-AAAA TAAAA TAAAA TAAAA TA-AAA TAA-AA TAAAA TAAAA
21629868 TAAAA TAAAA TAAAA TAAAAA TAAAAA TGAAAA TGAAAA TAAAA TAAAA
1 TAAAA TAAAA TAAAA T-AAAA T-AAAA T-AAAA T-AAAA TAAAA TAAAA
21629917 AATAAAATTA
Statistics
Matches: 78, Mismatches: 6, Indels: 12
0.81 0.06 0.12
Matches are distributed among these distances:
4 6 0.08
5 36 0.46
6 36 0.46
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (5 bp):
TAAAA
Found at i:21629924 original size:29 final size:28
Alignment explanation
Indices: 21629822--21629923 Score: 113
Period size: 29 Copynumber: 3.6 Consensus size: 28
21629812 AGTAAATAGC
21629822 TAAAATAAAAAT-AAAA-GAAAA-AATATA
1 TAAAATAAAAATAAAAATGAAAATAA-A-A
*
21629849 TAAATAATAATAATAAAAAT-AAAATAAAA
1 T-AA-AATAAAAATAAAAATGAAAATAAAA
21629878 TAAAATAAAAATAAAAATGAAAATGAAAA
1 TAAAATAAAAATAAAAATGAAAAT-AAAA
21629907 TAAAATAAAAAATAAAA
1 TAAAAT-AAAAATAAAA
21629924 TTAAAAAAAC
Statistics
Matches: 65, Mismatches: 2, Indels: 13
0.81 0.03 0.16
Matches are distributed among these distances:
27 15 0.23
28 9 0.14
29 20 0.31
30 19 0.29
31 2 0.03
ACGTcount: A:0.77, C:0.00, G:0.03, T:0.20
Consensus pattern (28 bp):
TAAAATAAAAATAAAAATGAAAATAAAA
Found at i:21629929 original size:29 final size:27
Alignment explanation
Indices: 21629854--21629916 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 27
21629844 ATATATAAAT
21629854 AATAATAATAAAAATAAAAT-AAAATAA
1 AATAA-AATAAAAATAAAATGAAAATAA
21629881 AATAAAAATAAAAATGAAAATGAAAATAA
1 AAT-AAAATAAAAAT-AAAATGAAAATAA
21629910 AATAAAA
1 AATAAAA
21629917 AATAAAATTA
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
27 12 0.36
28 11 0.33
29 10 0.30
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (27 bp):
AATAAAATAAAAATAAAATGAAAATAA
Found at i:21629930 original size:7 final size:6
Alignment explanation
Indices: 21629823--21629930 Score: 95
Period size: 6 Copynumber: 18.7 Consensus size: 6
21629813 GTAAATAGCT
* *
21629823 AAAATA AAAATA AAAGA-A AAAAT- -ATATA AATAATA ATAATA AAAAT-
1 AAAATA AAAATA AAA-ATA AAAATA AAAATA AA-AATA AAAATA AAAATA
* *
21629869 AAAAT- AAAAT- AAAATA AAAATA AAAATG AAAATG AAAAT- AAAATAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAAT-A
*
21629915 AAAATA AAATTA AAAA
1 AAAATA AAAATA AAAA
21629931 AACATATACT
Statistics
Matches: 87, Mismatches: 7, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
4 3 0.03
5 21 0.24
6 53 0.61
7 10 0.11
ACGTcount: A:0.78, C:0.00, G:0.03, T:0.19
Consensus pattern (6 bp):
AAAATA
Found at i:21630237 original size:11 final size:11
Alignment explanation
Indices: 21630221--21630247 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
21630211 AGGCAACCCC
21630221 TTTTTTTGTTT
1 TTTTTTTGTTT
21630232 TTTTTTTGTTT
1 TTTTTTTGTTT
21630243 TTTTT
1 TTTTT
21630248 AAAGCTCCTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.00, C:0.00, G:0.07, T:0.93
Consensus pattern (11 bp):
TTTTTTTGTTT
Found at i:21630344 original size:41 final size:41
Alignment explanation
Indices: 21630251--21630389 Score: 226
Period size: 41 Copynumber: 3.4 Consensus size: 41
21630241 TTTTTTTAAA
*
21630251 GCTCCTCTAAATAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAA-TAAATT
**
21630293 GCTCCTCTAAACAGAGGCACCTTGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
21630334 GCTCCTCTAAACAGAGGCACCACGACTTTGTAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
21630375 -CTCCTCTAAACAGAG
1 GCTCCTCTAAACAGAG
21630390 AAATTGCTCC
Statistics
Matches: 91, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 15 0.16
41 44 0.48
42 32 0.35
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
Found at i:21630400 original size:21 final size:20
Alignment explanation
Indices: 21630370--21630410 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
21630360 TTTGTAAAAT
21630370 AAATTCTCCTCTAAACAGAG
1 AAATTCTCCTCTAAACAGAG
21630390 AAATTGCTCCTCTAAACAGAG
1 AAATT-CTCCTCTAAACAGAG
21630411 GCACCATGAC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 5 0.25
21 15 0.75
ACGTcount: A:0.39, C:0.24, G:0.12, T:0.24
Consensus pattern (20 bp):
AAATTCTCCTCTAAACAGAG
Found at i:21630424 original size:61 final size:61
Alignment explanation
Indices: 21630329--21630508 Score: 264
Period size: 57 Copynumber: 3.0 Consensus size: 61
21630319 TTTGGAAAAT
21630329 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGTAAAATAAATT-CTCCTCTAAACAGAG
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTG-AAAATAAATTGCTCCTCTAAACAGAG
* *
21630390 AAATTGCTCCTCTAAACAGAGGCACCATGACTTTGGAAAGTAAATTGCTCCTCTAAACAGAG
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTT-GAAAATAAATTGCTCCTCTAAACAGAG
*
21630452 -----GCACCTCTAAACAGAGGCACCACGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAG
1 AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAA-TAAATTGCTCCTCTAAACAGAG
21630509 GCACCACGAC
Statistics
Matches: 111, Mismatches: 5, Indels: 10
0.88 0.04 0.08
Matches are distributed among these distances:
56 4 0.04
57 49 0.44
61 42 0.38
62 16 0.14
ACGTcount: A:0.37, C:0.24, G:0.16, T:0.23
Consensus pattern (61 bp):
AAATTGCTCCTCTAAACAGAGGCACCACGACTTTGAAAATAAATTGCTCCTCTAAACAGAG
Found at i:21630460 original size:16 final size:16
Alignment explanation
Indices: 21630439--21630472 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
21630429 GTAAATTGCT
21630439 CCTCTAAACAGAGGCA
1 CCTCTAAACAGAGGCA
21630455 CCTCTAAACAGAGGCA
1 CCTCTAAACAGAGGCA
21630471 CC
1 CC
21630473 ACGACTTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.35, C:0.35, G:0.18, T:0.12
Consensus pattern (16 bp):
CCTCTAAACAGAGGCA
Found at i:21630512 original size:41 final size:42
Alignment explanation
Indices: 21630455--21630540 Score: 165
Period size: 41 Copynumber: 2.1 Consensus size: 42
21630445 AACAGAGGCA
21630455 CCTCTAAACAGAGGCACCACGACTTT-GAAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCT
21630496 CCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCT
1 CCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCT
21630538 CCT
1 CCT
21630541 TGACAATCAT
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
41 26 0.59
42 18 0.41
ACGTcount: A:0.35, C:0.26, G:0.17, T:0.22
Consensus pattern (42 bp):
CCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATTGCT
Found at i:21631808 original size:7 final size:8
Alignment explanation
Indices: 21631789--21631827 Score: 60
Period size: 8 Copynumber: 4.8 Consensus size: 8
21631779 TTGAATCTCC
21631789 TTTTTTCA
1 TTTTTTCA
21631797 TTTTTTCA
1 TTTTTTCA
*
21631805 TTTTCTCA
1 TTTTTTCA
21631813 TTTCTTTCA
1 TTT-TTTCA
21631822 TTTTTT
1 TTTTTT
21631828 TTTCTTTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.10, C:0.15, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTTTCA
Found at i:21631838 original size:22 final size:22
Alignment explanation
Indices: 21631819--21631862 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
21631809 CTCATTTCTT
*
21631819 TCAT-TTTTTTTTCTTTTTTCA
1 TCATCTTTTTTCTCTTTTTTCA
*
21631840 TCATCTTTTTTCTCTTTTCTCA
1 TCATCTTTTTTCTCTTTTTTCA
21631862 T
1 T
21631863 TTTTCATCCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
21 4 0.20
22 16 0.80
ACGTcount: A:0.09, C:0.20, G:0.00, T:0.70
Consensus pattern (22 bp):
TCATCTTTTTTCTCTTTTTTCA
Done.