Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 127 of 195
Found at i:21631850 original size:20 final size:18
Alignment explanation
Indices: 21631824--21631866 Score: 59
Period size: 20 Copynumber: 2.3 Consensus size: 18
21631814 TTCTTTCATT
*
21631824 TTTTTTTCTTTTTTCATCA
1 TTTTTTTCTCTTTTC-TCA
21631843 TCTTTTTTCTCTTTTCTCA
1 T-TTTTTTCTCTTTTCTCA
21631862 TTTTT
1 TTTTT
21631867 CATCCATTGT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
18 4 0.18
19 5 0.23
20 13 0.59
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (18 bp):
TTTTTTTCTCTTTTCTCA
Found at i:21632202 original size:8 final size:9
Alignment explanation
Indices: 21632187--21632220 Score: 59
Period size: 9 Copynumber: 3.7 Consensus size: 9
21632177 CATGTGTGGC
21632187 ATTTTTTTT
1 ATTTTTTTT
21632196 ATTTTTTTT
1 ATTTTTTTT
21632205 ATTTTTTTTT
1 A-TTTTTTTT
21632215 ATTTTT
1 ATTTTT
21632221 GAGACCTTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
9 15 0.62
10 9 0.38
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (9 bp):
ATTTTTTTT
Found at i:21632203 original size:10 final size:10
Alignment explanation
Indices: 21632188--21632220 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
21632178 ATGTGTGGCA
21632188 TTTTTTTTA-
1 TTTTTTTTAT
21632197 TTTTTTTTAT
1 TTTTTTTTAT
21632207 TTTTTTTTAT
1 TTTTTTTTAT
21632217 TTTT
1 TTTT
21632221 GAGACCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 9 0.39
10 14 0.61
ACGTcount: A:0.09, C:0.00, G:0.00, T:0.91
Consensus pattern (10 bp):
TTTTTTTTAT
Found at i:21633705 original size:117 final size:117
Alignment explanation
Indices: 21633556--21634020 Score: 704
Period size: 117 Copynumber: 4.0 Consensus size: 117
21633546 TCTTGTGTGG
* **
21633556 GGAAAATTGGTACTTTCAACTTTTCCCCAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
*
21633621 GATACTTTCAACTTTTCCTAAAAAATATTTTTTTTGAAACTTTGATTTCCAA
66 GATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
* *
21633673 GGAAAATTGATACTTTCATCTTTTCCCT-AAAAATATTTTTTGAAAATTTTGATTTTCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTT-CCTAAAAAATATTTTTTGAAAA-TTT-ATTTTTAAGGAAA
*** * **
21633737 ATTGATACTTTCAACTTTTCCTCAAAAA-CCCTTTTTTGAAA-TTTTATTTTTAA
63 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
* * *
21633790 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAAGGCAAATT
1 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
21633855 GATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
66 GATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
*
21633907 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTTG-AAACTTATTTTTAAGGAAAAT
1 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATA-TTTTTTGAAAATTTATTTTTAAGGAAAAT
*
21633971 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGGAAATTTTGATTT
65 TGATACTTTCAACTTTTCCTCAAAAATATTTTTTTT-GAAACTTTGATTT
21634021 TTATTTAGAG
Statistics
Matches: 315, Mismatches: 25, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
115 39 0.12
116 16 0.05
117 187 0.59
118 34 0.11
119 39 0.12
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (117 bp):
GGAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTGAAAATTTATTTTTAAGGAAAATT
GATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
Found at i:21634005 original size:57 final size:57
Alignment explanation
Indices: 21633556--21634023 Score: 627
Period size: 57 Copynumber: 8.0 Consensus size: 57
21633546 TCTTGTGTGG
* *
21633556 GGAAAATTGGTACTTTCAACTTTTCCCCAAAAATA-TTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTG-AAATTTATTTTTAA
* **
21633613 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAAA-TTT-ATTTTTAA
* *
21633673 GGAAAATTGATACTTTCATCTTTTCC-CTAAAAATA-TTTTTTGAAAATTTTGATTTTCAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTG-AAA-TTT-ATTTTTAA
***
21633732 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCTTTTTTGAAATTTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAA-TTTATTTTTAA
*
21633790 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAATTTATTTTTAA
* **
21633847 GGCAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTGAAA-TTT-ATTTTTAA
* *
21633907 GGAAAATTGATACTTTCAACTTTTCCTAAAAAATATTTTTTTGAAACTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAATTTATTTTTAA
21633964 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGGAAATTTTGATTTTTA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTT-GAAA-TTT-ATTTTTA
21634024 TTTAGAGAAA
Statistics
Matches: 368, Mismatches: 28, Indels: 26
0.87 0.07 0.06
Matches are distributed among these distances:
57 117 0.32
58 78 0.21
59 79 0.21
60 87 0.24
61 7 0.02
ACGTcount: A:0.34, C:0.13, G:0.08, T:0.45
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAATTTATTTTTAA
Found at i:21634064 original size:6 final size:6
Alignment explanation
Indices: 21634031--21634101 Score: 58
Period size: 6 Copynumber: 11.5 Consensus size: 6
21634021 TTATTTAGAG
*
21634031 AAAATA GAATAATA AAAAAA ATAAATA AAAATA AAAA-A ATAAA-A AAAAGT-
1 AAAATA -AA-AATA AAAATA A-AAATA AAAATA AAAATA A-AAATA AAAA-TA
*
21634081 AAAACA AAAATA AAAATA AAA
1 AAAATA AAAATA AAAATA AAA
21634102 TTAAGATAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
5 5 0.09
6 36 0.67
7 9 0.17
8 4 0.07
ACGTcount: A:0.82, C:0.01, G:0.03, T:0.14
Consensus pattern (6 bp):
AAAATA
Found at i:21634068 original size:18 final size:18
Alignment explanation
Indices: 21634045--21634101 Score: 82
Period size: 18 Copynumber: 3.2 Consensus size: 18
21634035 TAGAATAATA
21634045 AAAAAAATAAATAAAAAT
1 AAAAAAATAAATAAAAAT
21634063 AAAAAAATAAA-AAAAAGT
1 AAAAAAATAAATAAAAA-T
*
21634081 AAAACAA-AAATAAAAAT
1 AAAAAAATAAATAAAAAT
21634098 AAAA
1 AAAA
21634102 TTAAGATAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 5
0.86 0.02 0.12
Matches are distributed among these distances:
17 13 0.36
18 23 0.64
ACGTcount: A:0.84, C:0.02, G:0.02, T:0.12
Consensus pattern (18 bp):
AAAAAAATAAATAAAAAT
Found at i:21634071 original size:27 final size:29
Alignment explanation
Indices: 21634031--21634096 Score: 91
Period size: 27 Copynumber: 2.3 Consensus size: 29
21634021 TTATTTAGAG
* * *
21634031 AAAATAGAATAATAAAAAAAA-T-AAATA
1 AAAATAAAAAAATAAAAAAAAGTAAAACA
21634058 AAAATAAAAAAATAAAAAAAAGTAAAACA
1 AAAATAAAAAAATAAAAAAAAGTAAAACA
21634087 AAAATAAAAA
1 AAAATAAAAA
21634097 TAAAATTAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
27 19 0.56
28 1 0.03
29 14 0.41
ACGTcount: A:0.82, C:0.02, G:0.03, T:0.14
Consensus pattern (29 bp):
AAAATAAAAAAATAAAAAAAAGTAAAACA
Found at i:21634110 original size:17 final size:16
Alignment explanation
Indices: 21634088--21634127 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
21634078 AGTAAAACAA
*
21634088 AAATAAAAATAAAATT
1 AAATAAAAAGAAAATT
*
21634104 AAGATAAAAAGAATATT
1 AA-ATAAAAAGAAAATT
21634121 AAATAAA
1 AAATAAA
21634128 CCTAATCTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (16 bp):
AAATAAAAAGAAAATT
Found at i:21634169 original size:8 final size:8
Alignment explanation
Indices: 21634139--21634172 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
21634129 CTAATCTAAT
*
21634139 AAATAAAA
1 AAATAAAC
21634147 AAATAAA-
1 AAATAAAC
21634154 AAATAAAC
1 AAATAAAC
21634162 AAATAAAC
1 AAATAAAC
21634170 AAA
1 AAA
21634173 CAAAGGAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
7 7 0.28
8 18 0.72
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (8 bp):
AAATAAAC
Found at i:21635189 original size:6 final size:6
Alignment explanation
Indices: 21635178--21635298 Score: 90
Period size: 6 Copynumber: 20.3 Consensus size: 6
21635168 GTAAATAGCT
* * * *
21635178 AAAATA AAAATA AAAGA-A AAATCTA TATATA AAATAATA ATAATA AAAAT-
1 AAAATA AAAATA AAA-ATA AAA-ATA AAAATA AAA--ATA AAAATA AAAATA
* * *
21635228 AAAATA AAAAT- AAAAT- TAAATG AAAATA AAAATA AAAATG AAAATA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA AAAATA
* *
21635274 AAAATA AAAA-A AATATA AATATA AA
1 AAAATA AAAATA AAAATA AAAATA AA
21635299 TATATATACT
Statistics
Matches: 93, Mismatches: 15, Indels: 14
0.76 0.12 0.11
Matches are distributed among these distances:
5 18 0.19
6 67 0.72
7 3 0.03
8 5 0.05
ACGTcount: A:0.75, C:0.01, G:0.02, T:0.21
Consensus pattern (6 bp):
AAAATA
Found at i:21635256 original size:33 final size:32
Alignment explanation
Indices: 21635208--21635300 Score: 105
Period size: 33 Copynumber: 2.8 Consensus size: 32
21635198 ATCTATATAT
* *
21635208 AAAATAATAATAATAAAAATAAAATAAAAATA
1 AAAATAAAAAAAATAAAAATAAAATAAAAATA
* * *
21635240 AAATTAAATGAAAATAAAAATAAAAATGAAAATA
1 AAAATAAA-AAAAATAAAAAT-AAAATAAAAATA
*
21635274 AAAATAAAAAAAATATAAATATAAATA
1 AAAATAAAAAAAATAAAAATA-AAATA
21635301 TATATACTTA
Statistics
Matches: 49, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
32 7 0.14
33 24 0.49
34 18 0.37
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (32 bp):
AAAATAAAAAAAATAAAAATAAAATAAAAATA
Found at i:21635294 original size:39 final size:39
Alignment explanation
Indices: 21635178--21635300 Score: 119
Period size: 39 Copynumber: 3.2 Consensus size: 39
21635168 GTAAATAGCT
* * * *
21635178 AAAATAAAAATAAAAGAAAAATCTATATATAA--AATAATA
1 AAAATAAAAATAAAATAAAAAT-AAAATAAAATGAA-AATA
* *
21635217 ATAATAAAAATAAAATAAAAATAAAATTAAATGAAAATA
1 AAAATAAAAATAAAATAAAAATAAAATAAAATGAAAATA
21635256 AAAATAAAAATGAAAATAAAAATAAAA-AAAAT-ATAAATA
1 AAAATAAAAAT-AAAATAAAAATAAAATAAAATGA-AAATA
*
21635295 TAAATA
1 AAAATA
21635301 TATATACTTA
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
38 6 0.08
39 48 0.68
40 17 0.24
ACGTcount: A:0.75, C:0.01, G:0.02, T:0.22
Consensus pattern (39 bp):
AAAATAAAAATAAAATAAAAATAAAATAAAATGAAAATA
Found at i:21635299 original size:12 final size:11
Alignment explanation
Indices: 21635213--21635302 Score: 78
Period size: 11 Copynumber: 8.0 Consensus size: 11
21635203 TATATAAAAT
*
21635213 AATAATAATAAA
1 AATAA-AATATA
*
21635225 AATAAAATAAA
1 AATAAAATATA
21635236 AATAAAAT-TA
1 AATAAAATATA
*
21635246 AATGAAAATAAA
1 AAT-AAAATATA
21635258 AATAAAA-ATGAA
1 AATAAAATAT--A
21635270 AATAAAA-ATA
1 AATAAAATATA
*
21635280 AAAAAAATATA
1 AATAAAATATA
21635291 AATATAAATATA
1 AATA-AAATATA
21635303 TATACTTACC
Statistics
Matches: 67, Mismatches: 5, Indels: 12
0.80 0.06 0.14
Matches are distributed among these distances:
10 12 0.18
11 29 0.43
12 26 0.39
ACGTcount: A:0.76, C:0.00, G:0.02, T:0.22
Consensus pattern (11 bp):
AATAAAATATA
Found at i:21635913 original size:26 final size:26
Alignment explanation
Indices: 21635876--21635928 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21635866 GTTGACTTAG
* *
21635876 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCACTCTAA
21635902 GCATAC-AGAGTTCATTCCCACTCTAA
1 GCATACGA-AGTTCATTCCCACTCTAA
21635928 G
1 G
21635929 ATCGAACCGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCACTCTAA
Found at i:21637281 original size:710 final size:710
Alignment explanation
Indices: 21635902--21637351 Score: 2131
Period size: 710 Copynumber: 2.0 Consensus size: 710
21635892 CCTAGTCTAA
* * *
21635902 GCATACAGAGTTCATTCCCACTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
21635967 CTCGAGCATGTGCTGGTGTCACATTTTTCTTCGTCGGAGGAGCATCGCCAGAGAACCTGACCGAC
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGAGGACCATCGCCAGAGAACCTGACCGAC
* * * * *
21636032 GGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGGCGTGCGCACATGATGTGTGCTGGTTGC
131 GGCATTAGGGTTCCGACGATCGGGGGGGTCGCGGGGGGCGTGCGCACATGATGTGCGATGGGTGC
*
21636097 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
196 CGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
21636162 AGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTACAGTGCTTAAAATGGGGACACTT
261 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCTTAAAATGGGGACACTT
* *
21636227 TTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTGTAGCTGAAGTTTTTTGTGCAAGGCAA
326 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAAGTTTTTTGTGCAAGCCAA
** *
21636292 AAAAAAAACAGAAGGATCACGTCTACCAAGTTTGGGGTGAAAAATCCTGCCGAAAAAATTTCAAA
391 AAAAAAAACA-AAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTGCCAAAAAAATTTCAAA
* * *
21636357 AAATCCCGAACTGTAAAAGGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATTAA
455 AAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
21636422 ACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGGCATG
520 ACTTCACGTCAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
21636487 CAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
585 CAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCACATCCCGT
* * * *
21636552 CTCTCAGGCCGGGGTAGTGCCTGCCCGCCCGCCTGCCTGCCCGCTCATTTCGTCGGTTGGCTTAG
650 CTCTCAGGCCAGGGTAGTGCCCG-CC-CCC-CC-GCCCGCCCGCTCATTTCATCGGTTGGCTTAG
* * * *
21636617 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTAGG
* * *
21636682 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATC-GAGGCACCATCGTCGGAGAACCTGACCGA
66 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGAGG-ACCATCGCCAGAGAACCTGACCGA
* * * * *
21636746 CGGTATTAGGGTTCTGGCGATCGGGGGTG-C-CGGGGGGTGTGCGCACATGATGTGCGATGGGTG
130 CGGCATTAGGGTTCCGACGATCGGGGGGGTCGCGGGGGGCGTGCGCACATGATGTGCGATGGGTG
* * *
21636809 CCGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCTCTTA
195 CCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
21636874 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACAC
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCT-TAAAATGGGGACAC
* * *
21636938 -TTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAA-TGTTTTTGTGCATGC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAAGT-TTTTTGTGCAAGC
* ** * ** *
21637001 CAACAAAAATGC-AAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTA
388 CAAAAAAAAAACAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTGCCAAAAAAATTTCA
* ** * *
21637065 AAAAATCTCGAACCGTAAAAAGTTTTGAAAATCTTGAAAAATAGAAAATGAGTCGTCTTGCCATG
453 AAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
21637130 AAATTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCA
518 AAACTTCACGTCAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
21637195 TGTAGAAATATGAAGATGTGCCTAAACCCACGTACCACCCTATCGATCCACGGCTTGCACATCCC
583 TGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCACATCCC
* * * * *
21637260 GTCTCTCTGGTCAGTGTAGTGCCCGCCCCCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAG
648 GTCTCTCAGGCCAGGGTAGTGCCCGCCCCCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAG
*
21637323 GCATACGGAGTTCATTCCCTGTCTAAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGAT
21637352 TGGATCAGAC
Statistics
Matches: 660, Mismatches: 72, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
706 55 0.08
707 2 0.00
708 3 0.00
709 2 0.00
710 243 0.37
711 1 0.00
712 66 0.10
713 148 0.22
714 5 0.01
715 135 0.20
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (710 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGAACCGAGGGTTGCGGCAGCACATGCTAGG
CTCGAGCATGTGCTGGTGCCACATTTTTCTTCATCGGAGGACCATCGCCAGAGAACCTGACCGAC
GGCATTAGGGTTCCGACGATCGGGGGGGTCGCGGGGGGCGTGCGCACATGATGTGCGATGGGTGC
CGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCTTAAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTGTAGCTGAAGTTTTTTGTGCAAGCCAA
AAAAAAAACAAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTGCCAAAAAAATTTCAAAA
AATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTCAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTC
TCTCAGGCCAGGGTAGTGCCCGCCCCCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAG
Found at i:21639146 original size:26 final size:26
Alignment explanation
Indices: 21639116--21639168 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21639106 GTTGACTTAG
21639116 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21639142 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21639168 G
1 G
21639169 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21640043 original size:26 final size:26
Alignment explanation
Indices: 21640007--21640059 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21639997 GTTGACTTAG
21640007 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21640033 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21640059 G
1 G
21640060 ATTGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21640942 original size:26 final size:26
Alignment explanation
Indices: 21640913--21640965 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21640903 GTTGACTTAG
21640913 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21640939 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21640965 G
1 G
21640966 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21641667 original size:895 final size:893
Alignment explanation
Indices: 21637446--21647956 Score: 12795
Period size: 903 Copynumber: 11.8 Consensus size: 893
21637436 TCTGGTTTGT
* * * * *
21637446 GCTCAGGCATGTGCTGGTGCCACATTTCTCTTCGTCGGGGCACCATCGTTGGAGCATCGTCGGAG
1 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAG
* * * * * * *
21637511 AACTTGACCTGCGGTAATAGGGTTCCAGCGATCGGGGTGGCCGGGGGGCTGTGCGCACGTGATGT
66 AACCTGACCGGCGGCATTGGGGTTCC-G-G-T---GAT---CGGGGGG-TGTGCGCACATGATGT
* * *
21637576 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAACTCG
121 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* ** *
21637641 TACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTCACTGCC-GATAGCCATTAAAGTGTCTAAA
186 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTCTGAA
* *
21637705 ATGGGGACACTTTTTTCAAATGGTCACAACATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTT
250 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
21637770 TGTGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGATTGGGGCCAAAACTCCTTCCGAAA
315 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * *
21637835 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAGATGAGTCGTC
380 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
21637900 TTGCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
445 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
21637965 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACAGCTTG
510 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
21638030 CGCATCCCGTCTCTCTGGCCGGCGTACTGTCCGCCCGCCGGCCCGCCTGCCCGTTCATTTCGTCG
575 CGCATCCCGTCTCTCTGGCCGACGTA--GT--GCCCGCCCGCCCG-CTGCCCGCTCGTTTCGTCG
* *
21638095 G-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGC
635 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGC
* * * ** * ** * * *
21638159 AGGATCGGCAACACGCAGAGGGGGACCCAATCGATCCTTGGCTTATGCATCCCACCGCTCTAGCT
700 AGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCC
* * *
21638224 GGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCGAA
765 GGCTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
21638289 GCATACGGAGTCCATTCCCAGTCTAACATCGGACCGGACCGA-GGTTACGACAGCATATGCTGG
830 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCACATGCTGG
* * * * * **
21638352 GTTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGAGGCACCATCGTCGGAGCATCATCAAAG
1 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAG
* *
21638417 AACCTGACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
66 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
21638482 CTGGTACTTGGCCC------T-------TA----T-AT------T---G-------ACCCCCTTA
131 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
21638513 AA-AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
196 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
21638577 TTTTTCAAATGGTCACAAAATTTTGTACACTTCGAGTTTTTAGCTGAGTTTTTTTATGCATGCCA
261 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
** * * * * *
21638642 GGAAAAATACAAGGATCACATCTCCCAAG-TTGGGCCCAAAACTCCTTTCAAAAAAATTTTAAAA
326 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
** * *
21638706 AATCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATACAAAACGAGTCGTCTTGCCATGAAT
391 AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
21638771 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGGCATTGGCACGT
456 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
* * *
21638836 AGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGACTTGCGCATCCCGTT
521 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
21638901 TCTCGGGCCGACGTAGTGCCTGCCCGCCCG-T--CCTCTCGTTTTGTCGGTTGGCTTAGGCATAC
586 TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * *
21638963 GGAGTTCATTCCCAGTCAAAGATTAGACCGGA-TCAAGGGTTGCGGCAGCAGGATCGACATCCCG
651 GGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACG
** * * * *
21639027 CAGAGGGGGACATGGTCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCA
715 CAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGACCGCA
*
21639092 CGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
780 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
** * * **
21639157 TCCCAGTCTAAGATC-GAACCAGACTGAGGGTTGCGACAGCACATTCTAC
845 TCCCAGTCTAAGATCAG-ACTGGACTGAGGGTTGCGGCAGCACATGCTGG
* * * *
21639206 TCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGTCGGAGCATCGTCGGAG
1 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAG
* *
21639271 AACCTGACCGGCGGCATTGGGGTTCCGGCGATGGGGGGGTTGGAGGGGTGTGCGCACATGATGTG
66 AACCTGACCGGCGGCATTGGGGTTCC-G-G-T-----GATCGG-GGGGTGTGCGCACATGATGTG
* * *
21639336 TGATAGGAGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
122 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
21639401 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
187 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
21639466 GGGGACACTTTTTTCAAACGGTCA-AAAATCTTATACACTTCAAGTTTTTAGCTGAATTTTTTTG
252 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
**
21639530 TGCATGCCAACAAAAATACAAGGATCATTTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
317 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * *
21639595 ATTTTAAAAAATCCCAAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATCTT
382 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
21639660 GCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
447 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
21639725 TTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGACTTGCG
512 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** *
21639790 CATCCCGTCTCTCTGGCCGACGTA----CTGCCCG-CC-C-GCCC-CTCAATTCATCGGTTGGCT
577 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCT
* * *
21639847 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACAGA-GGTTACGGCAGCAAGATCG
642 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCG
* * *
21639911 GCAGCACGCAGA-GGGGACCCGATCGATCCCTGGCTTATGCATCCTGCCCCTCTGGCCGGCTGAG
707 ACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAG
* *
21639975 CGTCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
772 CGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
** * * * *
21640040 GAGTTCATTCCCAGTCTAAGATTGGA-TCAGA-TCAAGGGTTGCGACAGCACATGCAGG
837 GAGTTCATTCCCAGTCTAAGATCAGACT-GGACT-GAGGGTTGCGGCAGCACATGCTGG
* * *
21640097 GCTCGGGCATGTGCTGGTGTCGCATTTTTCTTTGTCGGGGCACCATCATCGAAGCATCGTCGGAG
1 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAG
** * * *
21640162 AACCTGACCGATGACATTGGGGTTCCGATGATCGGGGGGGTTGGGGGGTGTGCACACATGATGTG
66 AACCTGACCGGCGGCATTGGGGTTCCGGTGATC---------GGGGGGTGTGCGCACATGATGTG
* * *
21640227 CGATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCAC
122 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
21640292 ACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACCAATAGCCATTAAAGTATCTGAAAT
187 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
21640357 GGGGACATTTTTTTTCAAATGGTCACACAAATTTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
252 GGGGACA-CTTTTTTCAAATGGTCACA-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
21640422 TGTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTCGGGGCCAAAACACCTTCCGAAA
315 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * * *
21640487 AAATTTTATAAAATCCCAAACCGTAAAAAGTTTCGAAAATCTTGAAAAATAGAAAATGAGTCATC
380 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
21640552 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGT
445 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
21640617 TATTGGCATGCAGAAATATGAAGATGTGCCCAAACCCACCTACCATCCTATCAATCCACGGCTTG
510 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* ** * * * *
21640682 CGTATCCCACCTCTCTGGCCAACGTAGTGCCCGCCCACCCGCCCGTCCGCTCGTTTCGTCGGTTG
575 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CTGCCCGCTCGTTTCGTCGGTTG
* * * * ** * * * *
21640747 GCTTAGGCGTAAGGAGTTCATTCCCAATCTAACATTGGTCTGGACTGAGGGTTGCAGCAGCAAGA
639 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGA
* ** * * * * * *
21640812 TCGATAGCATACAGAGGGGGAACCCGATCGATCCCTGGCTTATGCATCTTGCCCCTCTTGCAGAC
704 TCGACAGCACGCAGAGGGGG-ACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGC
* *
21640877 TGAGCGACCGCATGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
768 TGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* *
21640942 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGTACTTGCTGG
833 TACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCACATGCTGG
* * * * *
21641003 GCTCAGGCTTATGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCAGAG
1 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAG
* * *
21641068 AACCTGACCGGCGGCATTAGGGTTCCGGTGATCGGGGGGTCTGCGCACATGATGTGCGTTGGGTG
66 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* **
21641133 CTAGTACTTGGCCCTTATATTGGCCCCCTAAACCTCATCAAACCTCGAGAACTCACACCCCCTTA
131 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
21641198 AAGAGCATTTGAGATTTTATAGGTTTGCTCCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACT
196 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
21641263 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTCTTTAGCTGAATTTTTTTTTGCATGCCA
261 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * ***
21641328 AAAAAAATACAAGGATCATGTTTACCAAGTTTGACACCAAAA-TGCCTTCCGAAAAAATTTTAAA
326 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTTAAA
* ** * * * **
21641392 AAATCTCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAATGAGTTGTCTTGCCACAAA
390 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
21641457 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA
455 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * *
21641522 TAGAAATATGAAGATGAGCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCAT
520 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * ** *
21641587 CTCTCTCGTCGGTGTAGTGCCCGCCCGCCCGTCTGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAT
585 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * *
21641652 ACGGAGTTCATTCCCAGTCTAAGAT-TGAACCAGA-TCGAGGGTTGCAGCAGCAAGATC-AGCAG
649 ACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACT-GAGGGTTGCGGCAGCAGGATCGA-CAG
* * * * *
21641714 CACACAAAGGGGGACCCGATCGA-CCCTCGACTGGTGCATCCTGCCCCTCTGGCCGACTGAGCGA
711 CACGCAGAGGGGGACCCGATCGATCCC-CGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGA
* * *
21641778 CTGCACTCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
775 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
** * *
21641843 TTCATTCCCAGTCTAAGATC-GAACCAGACTGAGGGTTGCGACAGCACATGTTGG
840 TTCATTCCCAGTCTAAGATCAG-ACTGGACTGAGGGTTGCGGCAGCACATGCTGG
* * ** *
21641897 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCG-CTAGGGCACCATCGTCGGTGCATCGCCGGA
1 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGAAGCATCGTCGGA
* * * * *
21641961 GAACTTGATCGGCGACATTGGGGTTCCGGCGATCGGGGGGCCCGGGGGGTGCACGCACATGATGT
65 GAACCTGACCGGCGGCATTGGGGTTCCGGTGATC----GG---GGGGTGTG--CGCACATGATGT
*
21642026 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCA
121 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
21642091 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
186 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
21642156 TGGGGACCCTTTTTTGAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
251 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * *
21642221 GTCCATGCCAAAAAAAATACAAGGATCACGTATACAAAGTTTGGGTCGAAAACTCCTTCTGAAAA
316 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * **
21642286 AATTTTAAAAAATCTCAAACCGTAAAAAGTTTCGAAAGTTGTGAAAAATAGAAAACGAGTCGTCT
381 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
21642351 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAAGAATTTACAAGCCATAAAAATGGC
446 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
21642416 ATTGGCA-GTCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCTATGGCTCG
511 ATTGGCACGT-AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
21642480 CGCATCCCGTCTCTCTGGCCAACGCAGTGCCCGACCGCCCGCCCGCCTGCTCGTTTCGTCGGTTG
575 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CTGCCCGCTCGTTTCGTCGGTTG
* * * *
21642545 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCATGA
639 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGA
* * * * *
21642610 TCGATAGCATGTAGAGGGGGACCCGGTCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCT
704 TCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCT
* * *
21642675 GAGCGCCCGCACGCTCTTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
769 GAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* ** ** * * *
21642740 ACGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCAAGGGTTACGGTAGCACATGCTAG
834 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
21642800 GCTTGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCCGGAGCATCATCGGAG
1 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAG
* * *
21642865 AACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGTCTGGGGGTGTGCGCACATGATGTGTG
66 AACCTGACCGGCGGCATTGGGGTTCCG--G-T----GATCGGGGGGTGTGCGCACATGATGTGCG
**
21642930 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATTTCGAGAACTCACA-
124 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
21642994 CCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGG
189 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
21643059 TGACACTGTTTTCGAATGATCACAAAATCTTGTACACTTCGAGTTTTTCGCT-AAGTTTTTTTGT
254 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGT
*
21643123 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAGAAA
318 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA-AAA
* * * * *
21643188 ATTTTAAAAAATCCCGAACTGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCCT
382 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
21643253 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCAT-AAAA----A
447 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
21643313 -T-G-A---AGAAATATGAAGATGTGCCTAAACCGACCAACCACCTTATCGATCCACGGCTTGCG
512 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * *
21643372 CATCCTGTCTCTCT-TCCAGGTGTAGTGCCCGCCCGCCTGCCTGCCTGCTCGTTTCGTCGGTTGG
577 CATCCCGTCTCTCTGGCC-GACGTAGTGCCCGCCCGCCCG-CTGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
21643436 CTTAGGCATACGGAGTTCATTCTCAGTCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGAT
640 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* * * * **
21643501 CGACAGCACGTAGAGGGGGAACCGGTTGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGCTG
705 CGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTG
* * *
21643566 AGC-ACCGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGCTT-ATTCCAAGTCTAAGCAT
770 AGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAG-TTCATTCCCAGTCTAAGCAT
* * * * * *
21643629 ATGCAGTTCATTCCCAGTCGAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTAG
834 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCACATGCTGG
* * * * * * * *
21643689 GCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCGTC---GAAACATCG-CCAGAGAACCTGACCG
1 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGA-AGCATC-GTCGG
* *
21643750 ACG-ACATTAGGGTACCGGCGGCATTGGGGTTCCGGCGATCAGGGGGTCGAGGGAGGTGTGCGCA
64 A-GAAC-CT---G-ACCGGCGGCATTGGGGTTCC-G-G-T-----GATCG-GGG-GGTGTGCGCA
* * *
21643814 CATCATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACCTCG
113 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * *
21643879 AGAACTCACACGCGCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGT
178 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* *
21643944 GTCTGAAACGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGA
243 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * *
21644009 ATTTTTTTGTGCACGCCAAGAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAAATCCT
308 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * *
21644074 TCCAAAAAAATTTTAAAAAATCAT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAT
373 TCCGAAAAAATTTTAAAAAATC-TCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
*
21644138 GAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
437 GAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
* * * *
21644203 AAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCC
502 AAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
* * *
21644268 ACGACTTGCGCATCCCGTCTCTCTGGCTGAAGTAGTGCCCGCCCGCCCGCCTGCCCGCTCGTTTC
567 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CTGCCCGCTCGTTTC
* * *
21644333 GTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-TCGAGGGTTGTG
631 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACT-GAGGGTTGCG
* * * * * * * **
21644397 GTAGCAGGATTGACAGTATGCAGAGAGGGACTCGGTCGATCCCCGGCTTGTGCATCCCACCCCTC
695 GCAGCAGGATCGACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTC
* * * *
21644462 TAGCCGGCTGAGTGCCCGCACGCTCGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTCCCAG
760 TGGCCGGCTGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
* * * * * * *
21644527 TCTAAGCACATGCAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACAGTAGCACATC
825 TCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCACATG
21644592 CTGG
890 CTGG
* * * * ** ** *
21644596 GCTCGAGCATGTGCTAGTGCCGAATTTTTCTTCCTCGGGGCACCATCACCGAAGCATCACCAGAG
1 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAG
* * * * * *
21644661 AACCTGATCGACGTCATTGGCGTTTCGATGATTGGGGGGGCAGGGGGGTGTGCGCACATGATGTG
66 AACCTGACCGGCGGCATTGGGGTTCCGGTGA-T-------C-GGGGGGTGTGCGCACATGATGTG
* * *
21644726 CGATGGGTGCTGGTACTTGGGCCTTATATTGGCCCCCTATCCCACATCAAACCTCGAAAACTCAC
122 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
21644791 ACCCCTTTAAAAAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCGATTAAAGAGTCTGAAAT
187 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
21644856 GGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACCCTTCCAGTTTTTAAC-GGATTGTTTTT
252 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTT
* * *
21644920 GTGCATGCCAAGAAAAATACAAGGATCACGTCTACCAGGTTTGGGGCCAAAACTCCTTCCAAAAA
316 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * ** * * *
21644985 AATTTTAAAAAATTTGGAACTGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGGGTCATCT
381 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
21645050 TGGCATTAAACTTCACGTGAAGGCTTAAGGGACCATCGTATGAATTTACAAGCCATAAAAATGGC
446 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
21645115 ATTGGCAAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGC
511 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
21645180 GCATCCCGTCTCTCTGGCTGTCGTAGTGCCCGCCCG-CC-C-GCCCGCTTGTTTCGTCGGTTGGC
576 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
21645242 TTAGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACC--ACCTCGAGGGTTGTGGTAGCAGAA
641 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGA-CT-GAGGGTTGCGGCAGCAGGA
* * * * * * * * *
21645305 TCGGCAGCATGCAAAGGGGGACCCGACCGA-CCCTCAGCTTGCGTATCCCGCCCCTCTGGCCGAC
704 TCGACAGCACGCAGAGGGGGACCCGATCGATCCC-CGGCTTGTGCATCCTGCCCCTCTGGCCGGC
* * *
21645369 TGAGCG-CACGCGCGCTCATTTCGTGGGATGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
768 TGAGCGAC-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
21645433 ATACGGAGTTCATTCCCAGTCTAAGATCGGA-TCGGACCGAGGGTTGCGGCTGCACATGCTGG
832 ATACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACTGAGGGTTGCGGCAGCACATGCTGG
* *
21645495 G-TCGGGCATGTGCTGGTGCCACATTTTTCTTCG-CTGGGGCACCATCGTCGGAGCATCGTCGGA
1 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGAAGCATCGTCGGA
* * * *
21645558 GAACCTGACCGGCGGCATTAGGGTTCTGGCGATCGGGGGGGCCGGGGGGGTGTGCACACATGATG
65 GAACCTGACCGGCGGCATTGGGGTTCCGGTGAT---------C-GGGGGGTGTGCGCACATGATG
* *
21645623 TGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
120 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
21645688 ACACCCCC-TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
185 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * *
21645752 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGTTGAATTGTTT
250 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* ** *
21645817 TGTGCATGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTTTGGCCAAAACTCCTTCTGAAA
315 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** * *
21645882 AAATTAAAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
380 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * * *
21645947 TTGGCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTACAACCCATAAAAATGG
445 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
21646012 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
510 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
21646077 CGCATCCCGTCTCTCTGGTCGGCGTAGT----GCCCG--C-CT----GCTCGTTTCGTCGGTTGG
575 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTGCCCGCTCGTTTCGTCGGTTGG
** * * * *
21646131 GATAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTACGGTC-GTAGGA
640 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGG-CAGCAGGA
** * * * *
21646195 TCTG-CAGCACATAGAGGGGGACCAG-TCGATCCCCGGCTTGCGCATCCTGCCCCTCTAGCCGAC
704 TC-GACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGC
*
21646258 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
768 TGAGCGACCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCA
* * * *
21646323 TACGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCGAGGGTTACGGGAGCACATGCTAG
833 TACGGAGTTCATTCCCAGTCTAAGATCAGACT-GGACTGAGGGTTGCGGCAGCACATGCTGG
* * * *
21646384 GCTTGGGCATGTGCTGGTGTCGCTTTTTTCTTCGTCGGGGCACCATCG-CCAGAGCATCGTCGGA
1 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGA-AGCATCGTCGGA
* *
21646448 GAACCTGACAGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGCGGGGGGGTGTGCGCACATGAT
65 GAACCTGACCGGCGGCATTGGGGTTCCGGTGAT----------C-GGGGGGTGTGCGCACATGAT
* *
21646513 GTGCGATGGTTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
119 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * * *
21646578 CACACCCCCCTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAACCATTAAAGTGTCTAA
184 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
21646643 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTTCACTTCGAGTTTTTAGCTGAATTTTT
249 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* **
21646708 TTGTGCATGCCAACAAAAATACAAGGATCACTTCTACCAAGTTTTTGGCCAAAACTCCTTCCGAA
314 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* *
21646773 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGT
379 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
21646838 CTTTG-CATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTAAGAATTTAC-AGCCCATAAAAA
444 C-TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CCATAAAAA
* *
21646901 TGGCATTGGCATGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
507 TGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
*
21646966 TTGCGCATCCCGTCTCTCTGGCCGATGTAGT----GCCCG-CC-C-GCCCGCTCGTTTCGTCGGT
572 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTGCCCGCTCGTTTCGTCGGT
** * * * ** *
21647024 TGGGATAGGTATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTATGGTC-GTA
637 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGG-CAGCA
* * ** *
21647088 GGATCTG-CAGCACACAGAGGGGGACCAG-TCGATCCCCGGCTTACGCATCCTGCCCCTCTAGCC
701 GGATC-GACAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCC
* * *
21647151 GGCTGAGC-ACCCACACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAG--T-
765 GGCTGAGCGA-CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* *
21647212 --C-TA---AG---------A-TC--AGAT----C-GGACTGAGGGTTACGGGAGCACATGCTGG
829 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCACATGCTGG
* * * * *
21647254 GGTTGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCG-CTGGAGCATCGTCGGA
1 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GAAGCATCGTCGGA
* ** *
21647318 GAACCTGACCGGCGGTATTGGGGTTCCGACGATGGGGGGGGCCGGAAGGGGGGGTGCTCGCACAT
65 GAACCTGACCGGCGGCATTGGGGTTCCG--G-T------GATC-G--GGGGGTGTG--CGCACAT
* *
21647383 GATCTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTGGAGA
116 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
*
21647448 ACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
181 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
21647513 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTAAATT
246 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* ** *
21647578 TTTTTGTGCATGCCAACAAAATTACAAGGATCTTGTCTACCACGTTTGGGGCCAAAACTCCTTCC
311 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * * *
21647643 -AAAAAATTTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAG
376 GAAAAAA-TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
21647707 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAA
440 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
*
21647772 AATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
505 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* * * * * *
21647837 GCTTGCGCATCCCGTCTCTCTGGCCGATGTAGTGCCCGCCCGCCCACCCGCCTGCTCATTTTGTC
570 GCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCC-GCTGCCCGCTCGTTTCGTC
* * * *
21647902 GGTTAGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAAACCAGACTGAGG
634 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGG
21647957 CTTTTGTTAG
Statistics
Matches: 8465, Mismatches: 921, Indels: 463
0.86 0.09 0.05
Matches are distributed among these distances:
852 14 0.00
853 202 0.02
854 100 0.01
855 1 0.00
856 12 0.00
858 2 0.00
860 226 0.03
861 141 0.02
862 16 0.00
863 41 0.00
869 5 0.00
870 111 0.01
871 8 0.00
872 11 0.00
873 454 0.05
874 2 0.00
875 4 0.00
876 2 0.00
877 7 0.00
878 5 0.00
879 2 0.00
880 2 0.00
881 61 0.01
883 4 0.00
885 1 0.00
886 11 0.00
887 8 0.00
888 3 0.00
889 288 0.03
890 398 0.05
891 485 0.06
892 458 0.05
893 78 0.01
894 545 0.06
895 577 0.07
896 424 0.05
897 238 0.03
898 749 0.09
899 334 0.04
900 179 0.02
901 194 0.02
902 12 0.00
903 1296 0.15
904 52 0.01
905 8 0.00
906 535 0.06
907 137 0.02
908 2 0.00
909 5 0.00
910 13 0.00
911 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGT
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGC
AGAGGGGGACCCGATCGATCCCCGGCTTGTGCATCCTGCCCCTCTGGCCGGCTGAGCGACCGCAC
GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGCAGCACATGCTGG
Found at i:21641837 original size:26 final size:26
Alignment explanation
Indices: 21641807--21641859 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21641797 GTTGACTTAG
21641807 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21641833 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21641859 G
1 G
21641860 ATCGAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21642740 original size:26 final size:26
Alignment explanation
Indices: 21642710--21642762 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21642700 GTTGACTTAG
21642710 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21642736 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21642762 G
1 G
21642763 ATCAAACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21645441 original size:26 final size:26
Alignment explanation
Indices: 21645405--21645457 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21645395 GATGACTTAG
21645405 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21645431 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21645457 G
1 G
21645458 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21646330 original size:26 final size:26
Alignment explanation
Indices: 21646294--21646346 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21646284 GTTGACTTAG
21646294 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21646320 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21646346 G
1 G
21646347 ATCAGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21649774 original size:269 final size:270
Alignment explanation
Indices: 21649294--21649832 Score: 857
Period size: 269 Copynumber: 2.0 Consensus size: 270
21649284 AATACAAGGA
* *
21649294 TCACGTCTACCAAGTTTGGCTCTAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGCAA
1 TCACGTCTACCAAGTTTGGCGCTAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCACAA
* * *
21649359 AAAGTTTTGAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
66 AAAGTTTTGAAAACCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
***
21649424 TAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAGATATGAAGATG
131 TAAACGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAGATATGAAGATG
* * * * *
21649489 TGCCTAAACCCACCTACCACCCTATCGATCCAGGGCTTGCGCATCCCGTCTGTCTGGCCGACGTA
196 TGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCAGTCTCTCTGGCCGACGTA
21649554 GTTCCCGCCC
261 GTTCCCGCCC
* * ** *
21649564 TCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTGAAAAAATTTTGAAAAATCCTGAACTACAA
1 TCACGTCTACCAAGTTTGGCGCTAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCACAA
* *
21649629 AAAGTTTTGAAAACCGTAAAAAAT-AGAAACGAGTCGTCTTGCCATGGAACTTCACGTGAAGGCT
66 AAAGTTTTGAAAACCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
21649693 TAAACGACCATTGTATGCATTTACAAGCCATAAAAATGGCATTGGCATGCAGAA-ATATGAAGAT
131 TAAACGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA-AAGATATGAAGAT
*
21649757 GTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCAGTCTCTCTGGCCGGCGT
195 GTGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCAGTCTCTCTGGCCGACGT
21649822 AGTTCCCGCCC
260 AGTTCCCGCCC
21649833 GCCCATTCAT
Statistics
Matches: 246, Mismatches: 22, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
269 164 0.67
270 82 0.33
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (270 bp):
TCACGTCTACCAAGTTTGGCGCTAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCACAA
AAAGTTTTGAAAACCGTAAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAACGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAGATATGAAGATG
TGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCAGTCTCTCTGGCCGACGTA
GTTCCCGCCC
Found at i:21650048 original size:26 final size:26
Alignment explanation
Indices: 21650019--21650071 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21650009 GTTGACTTAG
21650019 GCATACGGAGTTCAATCCCAATCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
* * *
21650045 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCAATCCCAATCTAA
21650071 G
1 G
21650072 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCAATCCCAATCTAA
Found at i:21651955 original size:26 final size:26
Alignment explanation
Indices: 21651925--21651977 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21651915 GTTGACTTAG
*
21651925 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21651951 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21651977 G
1 G
21651978 ATCGAACCGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21652739 original size:4 final size:4
Alignment explanation
Indices: 21652730--21652759 Score: 51
Period size: 4 Copynumber: 7.2 Consensus size: 4
21652720 CCGATGTAGT
21652730 GCCC GCCC GCCCC GCCC GCCC GCCC GCCC G
1 GCCC GCCC G-CCC GCCC GCCC GCCC GCCC G
21652760 TTTCGTCGGT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
4 21 0.84
5 4 0.16
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:21652973 original size:26 final size:26
Alignment explanation
Indices: 21652937--21652989 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21652927 GTTGACTTAG
*
21652937 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21652963 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21652989 G
1 G
21652990 ATCGGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21653860 original size:26 final size:26
Alignment explanation
Indices: 21653831--21653883 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21653821 GTTGACTTAG
*
21653831 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
21653857 GCATACGGAGCTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
21653883 G
1 G
21653884 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:21655637 original size:26 final size:26
Alignment explanation
Indices: 21655601--21655653 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21655591 GTTGACTTAG
* *
21655601 GCATACGGAGTTCATTTCGAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21655627 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21655653 G
1 G
21655654 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21657435 original size:26 final size:26
Alignment explanation
Indices: 21657399--21657454 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
21657389 TGGGTTGACT
21657399 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
*
21657425 TAAGCATACGGAGTTCATTCCCATTC
1 TAAGCATACGGAGTTCATTCCCAATC
21657451 TAAG
1 TAAG
21657455 ATCGGACCAG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.16, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:21657801 original size:902 final size:903
Alignment explanation
Indices: 21654732--21662073 Score: 9291
Period size: 899 Copynumber: 8.2 Consensus size: 903
21654722 GTTGACTTAG
* * ** *
21654732 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* ** ** *
21654797 CTCAAGCATGTGCTGGCACCACATTTTTCTTCACCGGGGGACCATCG-TCGGAGCATCGCCGGAG
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAG
* * * * * *
21654861 AACTTGACAGGCGGGATTGGGATTCCGGCGATCGGGGGGGCC--GGGG-G-G-G--CTTGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
21654919 TGATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*** * *
21654984 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCACCAGTAGCCGTTAAAGTGTCTTAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
21655049 GGGGATATTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGATTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
21655114 TGCACACCAAAAAAAGTACAAGGATCACGTCTACCATGTTTGGGGCCAAAA-TGCCTTCCGAAAA
391 TGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTTCGAAAA
* * *
21655178 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGACAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
21655243 TGCCATCAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
21655308 ATTGGCACATAGAAATATGAAGATCTGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
21655372 GCATCCTGTCTCTCTGGCCGACGTGGTGCCCGCCTGCCTGCCCGCCCGCTCGTTTCGTCAGTTGG
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGG
* ** * *
21655437 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGACTGGACCGAGGGTTTCGGCAGCAGGAT
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGAT
** * * * * * *
21655502 CGGTGGCACTCAG-AGAGGGACCCGATCAATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGTT
779 CGGCAGCACGCAGAAG-GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * *
21655566 GAGTGCCCGCACGCTTGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTTCGAGTCTAA
843 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** ** * *
21655627 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACTGGATCGAGGGTTGCGACAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
21655692 CTCGGGCATGTGCTTGATGCCGCATTTTTCTTCGTCGGGGCACCATCGC-CGGAGCAACGTCGGA
66 CTCAGGCATGTGC-TGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGA
* * * ** *
21655756 GAACCTGACCGACGACATTAGGGTTCCGGTGATCGGGGGGGCCGGGGGGTGTGCGCACATGACGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
*
21655821 GCGATGGGTGCGGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
21655886 CA-CCCCTTAATGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
*
21655950 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* **
21656015 GTGCACGCCAAAAAAAGTACAAGGATCACGTCTACCAAGTTTTTGGCCAAAACTCCTTTCGAAAA
390 GTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
* * * * * *
21656080 AATTTTTAAACATCCCGAACCGTAATAAGTTTCGAAATTCATGAAAAATAGAAAACGAGTCGTCT
455 AATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
21656145 TGCCATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
21656210 ATTGGCATGCAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATAGATCCACAGCTTGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*** * *
21656275 GCATCCCGTCTCTCTCATCGGCGTAGTGCCAGCCCGCCCG--C-CCGCTCGTTTTGTCGGTTGGC
650 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGC
* * * * ** * *
21656337 TGAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGAGTTATGGCAGTAGGATT
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * * * * * *
21656402 GGCAGCACGTAG-AGTGGGACCCGGCTGATCCTCGGCTTACGCATCCCACCCCTCTGGTCGGCTG
780 GGCAGCACGCAGAAG-GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * * * *
21656466 AGCGCCCGCTCGCTCGTTTCGTGGGTTGACTTATGCATACAGAGTTCATTCCCAGTTTGA
844 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
21656526 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTGCGGCGGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
21656591 CTCAGGCATGTGTTGGTGCCGCATTTTTCTTAGTCAGGGCACCATCGC-CGGAGCATTGCCGGAG
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAG
** * *
21656655 AACCTGATTGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCACACATGATGT
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
** * *
21656719 GCGATGGGTGCTGGTACTTGGAACTTATATTAGCCCCTTATCCCTCATCAAACCTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
21656784 CACCCCATTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAA
260 CACCCC-CTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAA
*
21656849 ATGGGGACACTTTTTTCAAAT-GTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
21656913 TGTGTATGCCAAAAAAAATACAAGGATCACGTCTACAAATTTTGGGGCCAAAACTCCTTTCGAAA
389 TGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAA
* * * *
21656978 AAATTTTAAAAAATCTCGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
* *
21657043 TTCCCATGAAACTTCACGTGAAGGCTTAAGGGACGATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
21657108 CATTGGCACGTAGAAATATGAAGATGTG-CTAAAACCCGCCTACCACCCTATCGATCAACGGCTT
584 CATTGGCACGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
21657172 GCGCATCCCGTCTCTCTGGCCGACGTACTGCCCGCCCGCCCGCCCGTCCGCTTGTTTCATCGGTT
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTT
* * ** * * *
21657237 GGCTTAGGCATCCGGAGTTCATTCCCATTCTAAGATCAGATTGGATCGAGTGTTGCCGCAGCAGG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGG
* * * *
21657302 ATCGGCAACACGCAGAAGGGGACCC-AGCCGATCCCCGGCTTGTGCATCCC-CCCCTCCGGCCGA
777 ATCGGCAGCACGCAGAAGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
21657365 CTGAGTGCCTGCACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAATCTAA
841 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
21657428 GCATACGGAGTTCATTCCCATTCTAAGATCGGACCAGACTGAGGTTTGCGACAACACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* *
21657493 CTCAGGCATGTGCTGGTGCCTCATTTTTCTTCG-CTGGGGCACCATCGCT-AGAGCATCGCCGGA
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTC-GGGGCACCATCGCTCGGAGCATCGCCGGA
* *
21657556 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCAGGGGGTGTGCGCACATGATGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * *
21657621 GCGATGGGTGCTGGTACTTAGCCCTTATATTGGCCCCCTATCCCCCATCAAACTTCAAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
* *
21657686 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCTAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
21657751 TGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* * *
21657816 TGTGCACGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA-TGCCTTCCGAA
389 TGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTTCGAA
* * *
21657880 AAAATTTTAAAAAATCCCGAACCGCAATAAGTTTCAAAAATCATGAAAAATAG-AAACGAGTCGT
453 AAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
*
21657944 CTTGCCATGGAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
21658009 GCATTGGCATGCAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTT
583 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
21658074 GCGCATCCCGTCTCTCTGGCTGGCATAGTGCCTGCCCGCCCG--C-CCACTCATTTTGTCGGTTG
648 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTG
* * ** **
21658136 GCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGGATTGAGGGTTGCAACAGCAGGA
713 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGA
* * *
21658201 TCGGTAGCACGCAG-AGGAGGACCCAACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGC
778 TCGGCAGCACGCAGAAGG-GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
21658265 TGAGCGCTCGGACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
21658327 GCATGCGGAGTTCATTCCCAGTATAAGATCAGACTAGACCAAGGGTTACGGCAGCACATGCTGTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
21658392 CTCGGGCATGTGCTGGTGCCACATTTCTCTTCGTCGGGGCACCATCG-TCGGAGCATTGCCGGAG
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAG
* * *
21658456 AACCTGACCAGCGGCATTGGGGTTCCGACGATCGGGGGAGCCGGGGGGTGTGCGCACATGATGTA
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * **
21658521 CGATAGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
21658586 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
21658651 GGGGACACTTTTTGCAAATGGTCACAAAATCTTGTACCCTTTGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** * *
21658716 TGCACGCCAACAAAGGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACACC-TTCCAAAAA
391 TGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
* * * *
21658780 ATTTTTAAAAAATCTCAAACCGCAATAAGTTTCGAAAATCATGAAAAATAAAAAATGAGTCGTCT
456 A-TTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
21658845 TGCTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
21658910 ATTGGTACACAAAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACAGCTTGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
21658975 GCATCCCGTCTCTCTGGCCAGCATACTGCCCGCCCGCCCGCCCGCCCGCCCGCTCATTTCATCGG
650 GCATCCCGTCTCTCTGGCCGGCGTA--G--TGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGG
* ** * * *
21659040 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACTGAAGGTTGCGGTAGCA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
* * * *
21659105 GGATCGGCAGCACGCAGAGGGGGACCCGACCGATCACCGGCTTGCGCATCCTGCCCCTCTAGCCG
775 GGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * * *
21659170 GCTCAGCGCCTGCATGCTCATTTCGTGGGTTGACTTAGTG-ATACGGAGTTCATTCCCAG--T--
840 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG-GCATACGGAGTTCATTCCCAGTCTAA
* * * *
21659230 G--TA---AG---A-----AG-----G-T---ATCAGACCGAGGGTTACAACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * * *
21659273 CTGAGGCATGTGCTGGTGGCGCATTCTTCTTTGCCGGGGCACCATC-ATCGGAGCATCACCGGAG
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAG
*
21659337 AACCTGACCGGCGGCATTGGGGTTCCGACGAT---------CGGGGGGTGTGCGCACATAATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
21659393 CGATGAGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCCCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
21659458 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTGTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
21659523 GGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTATCTAAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
21659587 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGCCCAAAATTCCTTCCGAAAAA
391 TGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
*** * * *
21659652 ATTTTAAAAAATCTTGAACCGCAAAAAGTTTTGAAAATCATAAAAAATAGAAAATGAGTCGTCTT
456 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
21659717 GCCATGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACTAGCCATAAAAAGGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
21659782 TTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
586 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
21659847 CATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGTCCG--C-TCGCTCGTTTCGT-GAGTTGGC
651 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCG-GTTGGC
* * * * *
21659908 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAAGGTTGCGGTAGCAGGTTC
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATC
* * *
21659973 GGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGA
780 GGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
21660038 GCTCCCGCACGCTCGTTTCGTGGGTTGACTTAGGAATACGGAGTTCATTCCCAGTCTAA
845 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** ** *
21660097 GCTTACCGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGCGACAGCGCATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * *
21660162 CTC-GAGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCGC-CGGAGCATTGTCGGA
66 CTCAG-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGA
* * *
21660225 GAGCCTGACCGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* *
21660290 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCGAGAACTC
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCAAGAACTC
* * *
21660355 ACACCCCCTTAAAGAGCATTTGATATTTTACAAGTTTGCTT-CCAGTAGCCATTAAACTGTCTGA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-TTGCCAGTAGCCATTAAAGTGTCTGA
21660419 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
21660484 TTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCATGTTTGGGGCCAAAACTCC-TTCTGA
388 TTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GA
* * ** *
21660548 AAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTTG
452 AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCG
* *
21660613 TCTTGGCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
21660678 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCT
582 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
21660743 TGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCACGCCTGCCCGTCCGCC-CATTCGTTTCGTCGG
647 TGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGC--TCGTTTCGTCGG
* * *
21660807 CTGGCTTAGGCATACGGAGTTCATTCCAAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
* * * ** * * * *
21660872 GGATCGACAGCACACAGAGGGGGACCCGGTCGATCACTGGCTTG-GACATCCCGCCCCTCCGACC
775 GGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCG-CATCCCGCCCCTCTGGCC
* * * * **
21660936 GACTCAGCACCCGTACGCTCGTTTCACGGGTTGACTTAGGCATAC--AG---------AG--T--
839 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
21660986 ---T-C--A--T--TT-CCAGTCTAGGATTGGACCGGATCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
** * **
21661040 CTC-GAGCATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCACCATCG-TCGGAGCATCATCGGA
66 CTCAG-GCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGA
* * *
21661103 TAACCTGACCGGCGGCACTGGGGTTCCGACGA-AGGGGGTGGCCGGGGGGGTGTGCGCACATGAT
130 GAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGG-GGCC-GGGGGGTGTGCGCACATGAT
*
21661167 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
** * *
21661232 CATGCCGCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTT-CCAGTAGCCATTAAAGTGTTTG
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG-TTGCCAGTAGCCATTAAAGTGTCTG
* * * * *
21661296 AAATGGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGACTTTTCAGCTAAATGTT
322 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * * * *
21661361 TTTGTGCATGCCAACATAGATACAAGGATCACGTCTACCAAGCTTGGGCCCAAAACTCC-TTCTG
387 TTTGTGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-G
* *
21661425 AAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
451 AAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTC
* *
21661490 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTACGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
21661555 TGGTATTGGCACGCAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGC
581 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * ** *
21661620 ATACGGATCCCGTCTCTCTGGTCGGCGTAGTGCCCGACCAACCGCCCGCCCGCTCATTTCGTCGG
646 TTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGG
* * * *
21661685 TTGGCTTAGGCATACGGAGTTCATTCCC-GTCGAAGATCGGACCAGACCGAGGGTTGCGGTAGCA
710 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCA
* * * * * * * * *
21661749 GGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTGCCCATCCTGCCCCTCCGGTCG
775 GGATCGGCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
21661814 GCTGAGCACCCGCACGCTCATTTCGCT-GGTTGACTTAGGCACACGGAGTTCATTCCCAGTCTAA
840 GCTGAGCGCCCGCACGCTCGTTTCG-TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** *
21661878 G-AT-C--AG---------A--C-----T--G----GACCGAGGGTTGCGGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * *
21661917 CACGGGCATGTGCTGGTGCCACATTTTTCTTCTTCGGGGCACCATCAC-CGGAGCATCGCTGGAG
66 CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAG
* ** * * * * *
21661981 AACCTAACCGATGACATTGGAGTTTCGATGATC--GGGGGACGGGGGGTGTGCGCACATGATGTG
131 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
21662044 CGATGGGTGCTGGTACTTGGCCCTTATATT
196 CGATGGGTGCTGGTACTTGGCCCTTATATT
21662074 TGCTTCCAGT
Statistics
Matches: 5660, Mismatches: 661, Indels: 273
0.86 0.10 0.04
Matches are distributed among these distances:
862 2 0.00
863 185 0.03
865 2 0.00
867 13 0.00
869 3 0.00
871 296 0.05
872 162 0.03
874 53 0.01
875 4 0.00
876 3 0.00
877 224 0.04
878 586 0.10
879 60 0.01
880 3 0.00
881 112 0.02
883 2 0.00
884 1 0.00
885 3 0.00
886 2 0.00
888 4 0.00
889 106 0.02
890 4 0.00
891 1 0.00
893 2 0.00
894 3 0.00
895 68 0.01
896 75 0.01
897 19 0.00
898 430 0.08
899 1219 0.22
900 403 0.07
901 82 0.01
902 830 0.15
903 357 0.06
904 161 0.03
905 3 0.00
907 174 0.03
908 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCTCGGAGCATCGCCGGAG
AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCACGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
ATTTTAAAAAATCCCAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCAGGATCG
GCAGCACGCAGAAGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:21658337 original size:26 final size:26
Alignment explanation
Indices: 21658301--21658353 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21658291 GTTGACTTAG
*
21658301 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
21658327 GCATGCGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
21658353 G
1 G
21658354 ATCAGACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:21659011 original size:4 final size:4
Alignment explanation
Indices: 21659002--21659027 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
21658992 CCAGCATACT
21659002 GCCC GCCC GCCC GCCC GCCC GCCC GC
1 GCCC GCCC GCCC GCCC GCCC GCCC GC
21659028 TCATTTCATC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.00, C:0.73, G:0.27, T:0.00
Consensus pattern (4 bp):
GCCC
Found at i:21663975 original size:26 final size:26
Alignment explanation
Indices: 21663939--21663991 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21663929 GTTGACTTAG
* *
21663939 GCATACGGAGTTCATTCATAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
*
21663965 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCACAGTCTAA
21663991 G
1 G
21663992 ATAAGACTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCACAGTCTAA
Found at i:21664543 original size:896 final size:909
Alignment explanation
Indices: 21663070--21664983 Score: 2496
Period size: 896 Copynumber: 2.1 Consensus size: 909
21663060 GTTGACTTAG
* * * * *
21663070 GCATA-AGAAGTTCATTCCCTGTCTAAGATCAGACCGGACCGA-GGTTACGACAGCTCATGCTGG
1 GCATACAG-AGTTCATTCCCAGTCTAAGAT-AGACTGGACCGAGGGTTGCG-CAACACATGCTGG
** * *
21663133 GCTTGGGCATGTGCTGGCATTGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGCCAGAG
63 GCTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGAGGCACCATTGCCGGAGCATCGCCAGAG
* ** * *
21663198 AACTTGACCGGCGACATTGGGGTTCCGGTGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGT
128 AACCTGACCGGCGACATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGTGCACACATGATGT
* * * *
21663263 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATTCCTCATCAAACCTTGAGAACTCA
193 GCAATGGGTGCTGGTACTTGGCCCTTATATAGGCCTCCTATCCCTCATCAAACCTCGAGAACACA
* ** ** *
21663328 CATCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAA
258 CATCCCCTCAAAAAGCATTTGAGATTTTACAAATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
21663393 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
323 TGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
21663458 ATGCATGCCAAAATAAAATACAAGGATCACGTCTACCAAGTTTGGGGGCAAAACTCCTTTCTAAA
388 ATGCATGCCAAAATAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAA
* * *
21663523 AAATTTTAAAAAATCTCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
453 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
* * *
21663588 TTGCCATGAAACTTCACGTGAAGGCATAAGGGGCCATTGTATGAATTTACAATCCATAAAAATGG
518 TTGCAATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGG
** *
21663653 CATTGCCATGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCAC-CCT-AT-CGA-TCCAC-G
582 CATTGCCACACAGAAATATGAAGATGTGCCTAAA-CCACCTACCACACCTAATCCGACTCCACGG
*
21663713 GCTTCCGCATC-CC-A-TCTCTCTGGCCGG-CGT-AGT-G-C-CCGCC-CGCCCGCTCGTTTCGT
646 GCTTCCGCATCACCGACTATCTCTGGCCGGTCGTAAGTCGCCACCGCCTCGCCCGCTCGTTTCGT
* * * *
21663769 CAG-TTGGATTA-GGCATATGGAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCAAGGGTTGT-
711 CAGATTGGATTACGGCATACGGAGTTCATTACCAATCTAAGATCAGACT-AGACCAAGGGTTGTA
* *
21663830 GACAGCAGGATTGGCAGCACACAGAGGGGGA-CCGACCGATCCCCGGCTTGTGAATCCCGCCCCT
775 G-CAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGAATCCCGCCCCT
* ** * * ** *
21663894 CTGGCCGGCTGAGCGAGTGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATA
839 CTGGCCGGCTGAACGACCGCACGCTCAATTCATGGGTTGACTTACACATACGGAGTTCATTCACA
21663959 GTCTAA
904 GTCTAA
* * *
21663965 GCATACAGAGTTCATTCCCAGTCTAAGATAAGACTGAACCGAGGGTTGCAGCATCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGAT-AGACTGGACCGAGGGTTGC-GCAACACATGCTGGG
* * * *
21664030 CTTGGGCATGTGCTGGTGTCGTATTTTTCTTTGTCGAGGCACCATTGCTGGAGCATC-CTCGGAG
64 CTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGAGGCACCATTGCCGGAGCATCGC-CAGAG
*
21664094 AACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GGAGGGCCGAAGGGGGTGTGCACACATGAT
128 AACCTGACCGGCGACATTGGGGTTCCGACGATCGAGG-GGGCCG-AGGGGGTGTGCACACATGAT
21664158 GTGCAATGGGTGCCT-GTACTTGGCCCTTATATAGGCC-CCATATCCCTCATCAAACCTCGAGAA
191 GTGCAATGGGTG-CTGGTACTTGGCCCTTATATAGGCCTCC-TATCCCTCATCAAACCTCGAGAA
21664221 CACACA-CCCCGTCAAAAAGCATTTGAGATTTTACAAATTTGCTGCCAGTAGCCATTAAAGTGTC
254 CACACATCCCC-TCAAAAAGCATTTGAGATTTTACAAATTTGCTGCCAGTAGCCATTAAAGTGTC
*
21664285 TGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATT
318 TGAAATGGGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
*
21664350 TTTTTATGCATGCCAAAA-AAAATACAAGGGTCACATCTACCAAGTTTGGGGCCAAAAATCCTTC
383 TTTTTATGCATGCCAAAATAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTC
* * **
21664414 CAAAAAAATTTTTAACAATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAG
448 CAAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
*
21664479 TCGTCTTGCAATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
513 TCGTCTTGCAATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAA
* *
21664544 ATGGTATTGGCACACAGAAATATGAAGATGTGCCTAAACCACCTACCACACCTAATCCGACTCCA
578 ATGGCATTGCCACACAGAAATATGAAGATGTGCCTAAACCACCTACCACACCTAATCCGACTCCA
* *
21664609 CGGGCTTGCGCATCTACCGTACCCGTATCTCTGGCCGGTGGTAAGTGCCCGCCCATCCGCCTTCG
643 CGGGCTTCCGCATC-ACCG-A--C-TATCTCTGGCCGGTCGTAAGT---CG-CCA-CCGCC-TCG
* * * * * **
21664674 CCCGCTCGTTTTGTCCGATTGGCTTACGGCATACGGAGTTCATTATCAATCTATGATTGGACTAG
697 CCCGCTCGTTTCGTCAGATTGGATTACGGCATACGGAGTTCATTACCAATCTAAGATCAGACTAG
* * * * * *
21664739 ACCGAGGGTTGTAGCAGTAGGATCGGTAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGCG
762 ACCAAGGGTTGTAGCAGCAGGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCG
* * * **
21664804 CATCCTGCCCCTCTGGCCGGCTGAACGCCCGCACGCTCAATTCATGGGTTTCCTTACACATACGG
827 AATCCCGCCCCTCTGGCCGGCTGAACGACCGCACGCTCAATTCATGGGTTGACTTACACATACGG
*
21664869 AGTTCATTCCCAGTCTAA
892 AGTTCATTCACAGTCTAA
* * **
21664887 GCATACAGAATTCATTCCCAGTCTAAGATCGAACTGGACTAAGGGTTGCGGCAACACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATAG-ACTGGACCGAGGGTTGC-GCAACACATGCTGGG
* * *
21664952 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTC
64 CTTGGGCATGTGCTGGTGTCGCATTTTTCTTC
21664984 ACTGGGGTTC
Statistics
Matches: 874, Mismatches: 105, Indels: 53
0.85 0.10 0.05
Matches are distributed among these distances:
894 11 0.01
895 77 0.09
896 272 0.31
897 209 0.24
898 7 0.01
899 11 0.01
901 2 0.00
903 1 0.00
907 12 0.01
908 2 0.00
909 3 0.00
913 1 0.00
915 1 0.00
917 5 0.01
919 17 0.02
920 7 0.01
921 65 0.07
922 171 0.20
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (909 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATAGACTGGACCGAGGGTTGCGCAACACATGCTGGGCT
TGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGAGGCACCATTGCCGGAGCATCGCCAGAGAAC
CTGACCGGCGACATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGTGTGCACACATGATGTGCA
ATGGGTGCTGGTACTTGGCCCTTATATAGGCCTCCTATCCCTCATCAAACCTCGAGAACACACAT
CCCCTCAAAAAGCATTTGAGATTTTACAAATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATG
CATGCCAAAATAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CAATGAAACTTCACGTGAAGGCATAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATT
GCCACACAGAAATATGAAGATGTGCCTAAACCACCTACCACACCTAATCCGACTCCACGGGCTTC
CGCATCACCGACTATCTCTGGCCGGTCGTAAGTCGCCACCGCCTCGCCCGCTCGTTTCGTCAGAT
TGGATTACGGCATACGGAGTTCATTACCAATCTAAGATCAGACTAGACCAAGGGTTGTAGCAGCA
GGATCGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGAATCCCGCCCCTCTGGCCG
GCTGAACGACCGCACGCTCAATTCATGGGTTGACTTACACATACGGAGTTCATTCACAGTCTAA
Found at i:21664892 original size:26 final size:26
Alignment explanation
Indices: 21664862--21664913 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21664852 TTTCCTTACA
* *
21664862 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACAGAATTCATTCCCAGTCTAAG
21664888 CATACAGAATTCATTCCCAGTCTAAG
1 CATACAGAATTCATTCCCAGTCTAAG
21664914 ATCGAACTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.15, T:0.27
Consensus pattern (26 bp):
CATACAGAATTCATTCCCAGTCTAAG
Found at i:21665754 original size:26 final size:26
Alignment explanation
Indices: 21665718--21665770 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21665708 GTTGACATGG
21665718 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21665744 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21665770 G
1 G
21665771 ATCAGACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21666605 original size:26 final size:26
Alignment explanation
Indices: 21666569--21666621 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21666559 GTTGACTTAG
21666569 GCATACAGAGTTCATTCCCT-GTCTAA
1 GCATACAGAGTTCATT-CCTAGTCTAA
*
21666595 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
21666621 G
1 G
21666622 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 3 0.12
26 22 0.88
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:21667499 original size:26 final size:26
Alignment explanation
Indices: 21667463--21667515 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21667453 GTTGACTTAG
21667463 GCATACAGAGTTCATTCCCTA-TCTAA
1 GCATACAGAGTTCATT-CCTAGTCTAA
21667489 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
21667515 G
1 G
21667516 ATCGGATCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:21668391 original size:26 final size:26
Alignment explanation
Indices: 21668355--21668407 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
21668345 GTTGACTTAG
21668355 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTCCCT-GTCTAA
21668381 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCTGTCTAA
21668407 G
1 G
21668408 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCTGTCTAA
Found at i:21670204 original size:26 final size:26
Alignment explanation
Indices: 21670174--21670226 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21670164 GTTGACTTAG
* *
21670174 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21670200 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
21670226 G
1 G
21670227 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:21671103 original size:26 final size:26
Alignment explanation
Indices: 21671074--21671129 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
21671064 TGGGTTGACT
*
21671074 TAAGCATACGGAGTTCATTTCCAGTC
1 TAAGCATACAGAGTTCATTTCCAGTC
21671100 TAAGCATACAGAGTTCATTTCCAGTC
1 TAAGCATACAGAGTTCATTTCCAGTC
21671126 TAAG
1 TAAG
21671130 ATCAGACCGG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.30
Consensus pattern (26 bp):
TAAGCATACAGAGTTCATTTCCAGTC
Found at i:21671583 original size:900 final size:900
Alignment explanation
Indices: 21666389--21672324 Score: 7386
Period size: 900 Copynumber: 6.6 Consensus size: 900
21666379 AATAGGCCAT
* * * * * * *
21666389 TCGTTTCGTTGGTTGGCTTAGGCATACAGAGTTCATTCCTAATCTAAGATCAGACCAGACTGATG
1 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * * * *
21666454 GTTGCCGCAGCAGGATCGACAGCACGCAGAGGGGAACCCAACCGATCCCCAACTTGCGCATCCTG
66 GTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCCG
* *
21666519 CCCCTCTGGCCGGCTCAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCAT
131 CCCCTCTGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * * **
21666584 TCCCTGTCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGGATCAGACTGAGGGTTGTAACAG
196 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAG
* * ** *
21666649 CACATGCCTTGGCTTGGGCATGTGCTGGTGTTGTATTTTTCTTCG-CTGGGGCACCA---T----
261 CACATG-CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCAGA
* * * *
21666706 -CA-C-CGGAGAACCTGACCGAAGGTATTGGGGTTCC-AGCGATTGGGGGGGTCGGGGTGGTGTG
324 GCATCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGA-TCGGGGGGCCGGGG-GGTGTG
*
21666767 CGCACATGATGA-GCGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAA
386 CGCACATGAT-ATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* * *
21666831 CCTCTAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAAGTTTGCTGCCAGTAGCCATT
450 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* ** * * *
21666896 AAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCATACATTTCGTGTTTTTT
515 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
21666961 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
580 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
** *
21667026 CTCCTTTTGAAAGAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
645 CTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* * *
21667091 AAA-GAGGTCGTCTTGCCATGAAACTTCACGTGATGGCTTAAGGGACAATTGTATGAATTTACAA
710 AAACGA-GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * * *
21667155 TCAATAAAAATGGCATTGGCACACATAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATC
774 GCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * * *
21667220 AATCCACGGCTTGCGCATCCCGTCTCTCTTGTC-AGCGTAGTGCCCACCCGTCCGCCCGCCCGC
839 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCCGCCCGCCCGCCCG-CCGC
* * * *
21667283 TCGTTTCGTCGGTTGGCTTAGGAATACGAAGTTCATTCCCTGTCTAAGATCAGACCGGACCAAGG
1 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * * * ** *
21667348 GTTGCGGCAGTAGGATCGGCAGCACACAGAGGGGGACCTGGCCGATCCCCGGCTTGCGCATCCCG
66 GTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCCG
* * ** *
21667413 CCCATCTGGCCGGCTGAGTGCTCGTACGCTCATTTTATGGGTTGACTTAGGCATACAGAGTTCAT
131 CCCCTCTGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * * *
21667478 TCCCTA-TCTAAGCATACAGAGTTCATTCCTAGTCTAAGATCGGATCGGACTGAGAGTTGCGACA
196 TCCC-AGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACA
* * * * ** *
21667542 GCACATGCCTTGGCTCGGGCTTGTACTGGTGTCATATTTTTTTTCGTCGGGG---CA-C--CA-A
260 GCACATG-CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGA
* * * *
21667600 -CA-CT-GAAGAACCTGATCGATGGCATTGGGGTTCC-AGCGATCGGGGGGGCCGGGGTGTGTGC
324 GCATCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGA-CGATC-GGGGGGCCGGGGGGTGTGC
21667661 GCACATGATGA-GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
387 GCACATGAT-ATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * *
21667725 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGACATTTTACAGGTTTGCTGCCAGTAGTCATTA
451 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* * **
21667790 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTCGTACACTTCGTGTTTTTTT
516 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * *
21667855 CTGAATTTTTTTGTGCATGCCAACAAAAATTCAAGGATCATGTCTACCAAGTTTGGCGTCAAAAC
581 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * ** ** *
21667920 TCCTTCCAAAAAAATTTAAAAAAATCCTGAACCACAAAAAGTTTTGAAAATCATGAAAAATAGAA
646 TCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* *
21667985 AACAAGT-AGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAG
711 AACGAGTCA-TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * *
21668049 CCATAAAAATGGCATTGGCACGCAGAAAGATGAAGATGTGCCTAAGCCCACGTACCACCCTATCG
775 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * * *
21668114 ATCCACAGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGCCCGCCCGCCTGCCCAC
840 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CCGC
* * * * * * * *
21668176 TCATTTCATCGATTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATTAGACCGGATCGACG
1 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* * * *
21668241 GTTGCAGTAGCAGGATCGACAGCACGTA-AGAGGGACCCAACCGATCCCCGACTTGCGCATCCCG
66 GTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCCG
* * * *
21668305 CTCCTCTGGCCGGCTGAGTGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
131 CCCCTCTGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * *
21668370 TCCTAGTCTAAGCATACGGAGTTCATTCCCTGTCTAAGATCAGACCAGACCGAGGGTTGCGATAG
196 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAG
* * * *
21668435 CACATGTTGGGCTCGGGCATGTGTTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCAA
261 CACATGCTGGGCTCGGGCA--TG-TGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAG
*
21668500 AGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGA-GATCGGGGGGCCGGGGGGCTTG
323 AGCATC-TCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATCGGGGGGCCGGGGGG--TG
* * * *
21668564 TTGCGCACATGATGTGGCGATAGGTACTGGTACTTGGCCCTTATATTGGCCTCCGTATTCCCTCA
384 -TGCGCACATGATAT-GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC-CCCTA-TCCCTCA
* * * *
21668629 TCAAACCCTTGAGAAGTCACACCCCATTAAAGAGCATTTGAGATTTTATAGGTTTGCTG-CAGTA
445 TCAAA-CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * *
21668693 GCCATTAAAGTGTCTAAAATGGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTTGA
509 GCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
21668758 GTTGTTAGATGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGG
573 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GG
* * *
21668822 GGCTAAAACTTCTTCCG-AAAAATTTTAAAAAATCC-GAAACCGTAAAAA-TTTTAAAAATCGTG
637 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTG-AACCGTAAAAAGTTTCAAAAATCGTG
* *
21668884 AAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGA
701 AAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* **
21668949 ATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGCACCTAAACCCACCTACC
766 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
** *
21669014 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTATCCAACGTAGTGCCTACCCGCCCACCC
831 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG----CCCG----CCC
*
21669079 GCCTGCCCGTCCGC
888 GCCCGCCCG-CCGC
* * ** * *
21669093 TCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCATATTGGATCAAGG
1 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
* *
21669158 GTTGCAGCAACAGGATCGACAGCACGCA-ATGGGGGACCC-GACTGATCCCCGACTTGCGCATCC
66 GTTGCAGCAGCAGGATCGACAGCACGCAGA-GGGGGACCCAG-CCGATCCCCGACTTGCGCATCC
**** *
21669221 CGCCCCTCTGGCCGGCTGAGCATACGTACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTC
129 CGCCCCTCTGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * * *
21669286 ATTCCCAGTCTAAGGATACGAAGTTCATTCCCAGTCTAAGATCGGACCAGACC-ATGGGTTGCGA
194 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA-GGGTTGCGA
* * * ** * * *
21669350 CAACACATACTGGGCTCGGGCATGTGCAGGTGTTGCATTTTTCTTCGTCGGGACACCATTG-CCG
258 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAG
* * * * * * *
21669414 AAGCATCGTCGAAGAACCTGACCGGCGACGTTAGGGTTCCGGCGAACGGGGGGGCCGGGGGGTGT
323 -AGCATC-TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGTGT
* * * *
21669479 GCACACATGATGTGCGATGGGTGCCGGTACTT-GCCCTTATAGTGGCCCCCTATCCCTCATCAAA
385 GCGCACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
* *
21669543 CCTCGAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATT
450 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
*
21669608 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTA
515 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
* * *
21669673 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAACTTTGGGGCCAAAA
580 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * *
21669738 ATCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCTTGAAAAATAGA
645 CTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
21669803 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAG
710 AAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
* * * *
21669868 CCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTTTTG
775 CCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCG
* * * * *
21669933 ATCCACGGCTTGCGAATCCCGTCTCTCTGGCCAACGTAGTGCCAGCTCGCCCACCCGCCAGC
840 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCC-GC
* * * ** * *
21669995 TCATTTTGTCGGTTGGCTTACGCAT-CGGAGTTCATTCCCAGTCTAAGATTGGACTGGACTGAGG
1 TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
** * * ** * *
21670059 GTTGTGGTAGTAGGATCGACAGCACGCAGAGGGGGACCCAGTTGATCCTCGACTTGCGCATCCCA
66 GTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCCG
* * * * * *
21670124 CACATCTGGCTGGCTGAGTGCCTGTACGCTTATTTCATGGGTTGACTTAGGCATACGGAGTTCAT
131 CCCCTCTGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
* * * * *
21670189 TCCTAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATC-GAACTGGACCGAGGGTTGTGGCA
196 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGACA
* * * * * *
21670253 GCACATGCTAGGCTCGGGCATGTGCTGGTGCCGTATTTGTCTTCGCCGGGGCATCATTGTCAGAG
260 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAG
* * *
21670318 CATCATCGGAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGTCGGGGGGGTGTGCG
325 CATC-TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGGTGTGCG
* * * * *
21670383 CACATGATGTGCTATGGGTGCTGGCACTTGGCCCTTACATTGGCTCCCTATCCCTCATCAAACCT
388 CACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
*
21670448 CAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
453 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
21670513 GTGTCTAAAATGGGGACAATTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTAGCT
518 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* * *
21670578 GAATGTTTTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTC
583 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
** *
21670643 CTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGCT-AAAAGTTTTGAAAACCGTGAAAAATAGAA
648 CTTCCGAAAAAATTTTAAAAAATCCT-GAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAA
21670706 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
711 AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
21670771 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
776 CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
21670836 TCCATGGCTTGCGCATCCCGTCTCTTTGGCCGACATAGTGCCCGCCCGCCTGCCCGCACGC
841 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGC-CGC
* * *
21670897 TCGTTTCGGT-GGTTGGCTTAGGTATACGGAGTTCATTCCCAGTCTAAGACCAGACTGGACCGAG
1 TCGTTTC-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
* * * * * * * * *
21670961 GGTTGCAACAACAGGTTCGACAGCACGCAGAGGGGGAGCCGGTCGA-CCCTCGGCCTACGCATCC
65 GGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCC-CGACTTGCGCATCC
* * * *
21671025 CACCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGGTTGACTTAAGCATACGGAGTTC
129 CGCCCCTCTGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTC
* * *
21671090 ATTTCCAGTCTAAGCATACAGAGTTCATTTCCAGTCTAAGATCAGACCGGACCGAGGGTTG-GAC
194 ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGAC
* * * *
21671154 AGTACGTGCTGGGCTCGGGCATGTGTTGGTGCCGCATATTTCTTCGTCGGGGCACCATCGTCAGA
259 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGA
* * * *
21671219 GCATCATTGGAGAACTTGACCGACGGCATTGGGGTTCCGACGATCAGGGGG-CGGGGGGTGTGCA
324 GCATC-TCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCG
*
21671283 CACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCT
388 CACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
21671348 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGAGTTTACAGGTTTGCTGCCAGTAGCCATTAAA
453 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
21671413 GTGTTTGAAATGGGGACACTTTTTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTGGCT
518 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
21671478 GAAGTTTTTTGTGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
583 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* **
21671543 TTTCCGAAAAAATTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
648 CTTCCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA
** * * * *
21671608 TTAGTCGTCTTGCCATGAAACTTCATGTGAACGCTTAAGGGACCATTGTATGAATTTAGAAGCCA
713 CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
21671673 TAAAAATGGCATTGGCACGCAGACATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATC
778 TAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* ** *
21671738 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCATCCGTCTGC
843 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG-CCGC
* * * * * * *
21671797 TCGTTCCGTCGGTTCGG-TTAGGCATATGAAATTTATTCCCAGTCTAAGATCAGACCGAATCGAG
1 TCGTTTCGTCGGTT-GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG
*** ** * * * * *
21671861 GGTTATGGCAATAGGATCGGCAGCACACAAAGGGGGACCCGGTCGAT-CCCGACTTGCGCATCCC
65 GGTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCC
* * * * *
21671925 GCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCA
130 GCCCCTCTGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCA
* *
21671990 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGACA
195 TTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACA
* *
21672055 GCACATGCTAGGCTCGGGCATGTGTTGGTGCC-CAATTTTTCTTCGTCGGGGCACCA---T---A
260 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC-ATTTTTCTTCGTCGGGGCACCATCGTCAGA
* * *
21672113 G---C-CGGAGAACCT--------G-A-------T-C--TG-TCGGGGGG-C-----ATGTGCGT
324 GCATCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGC
* * * *
21672148 ACATGATGTGCGATGGGTGCTAGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATTAAACCTC
389 ACATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
** * *
21672213 GAGAACTCACACAACCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGACATTAAAG
454 GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
21672278 TGTCTAAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTAC
519 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
21672325 GCTTTTTTCA
Statistics
Matches: 4416, Mismatches: 544, Indels: 194
0.86 0.11 0.04
Matches are distributed among these distances:
864 167 0.04
869 8 0.00
870 1 0.00
872 1 0.00
873 1 0.00
880 1 0.00
881 1 0.00
889 8 0.00
891 14 0.00
892 148 0.03
893 551 0.12
894 341 0.08
895 1 0.00
897 3 0.00
898 1 0.00
899 131 0.03
900 626 0.14
901 324 0.07
902 603 0.14
903 194 0.04
904 14 0.00
905 31 0.01
906 5 0.00
907 13 0.00
908 149 0.03
909 288 0.07
910 292 0.07
911 124 0.03
912 16 0.00
913 17 0.00
914 4 0.00
915 66 0.01
916 16 0.00
917 95 0.02
918 161 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (900 bp):
TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGG
GTTGCAGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAGCCGATCCCCGACTTGCGCATCCCG
CCCCTCTGGCCGGCTGAGTGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAG
CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGC
ATCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCAC
ATGATATGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGA
GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG
TCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA
TTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT
CCGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGA
GTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAA
AAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC
GGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCGC
Found at i:21672014 original size:26 final size:26
Alignment explanation
Indices: 21671976--21672028 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21671966 GTTGACTTAG
*
21671976 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21672002 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21672028 G
1 G
21672029 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21672925 original size:615 final size:600
Alignment explanation
Indices: 21672148--21673546 Score: 1994
Period size: 615 Copynumber: 2.3 Consensus size: 600
21672138 GCATGTGCGT
* * *
21672148 ACATGATGTGCGATGGGTGCTAGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATTAAACCTC
1 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * *
21672213 GAGAACTCACACAACCTTAAAGAGCATTTGATATTTTACAGGTTTGCTGCCAGTAGACATTAAAG
66 GAGAACTCACAC-CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
21672278 TGTCTAAAATGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACGCTTTTTTCAAATGCCAG
130 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTTTCAAATGCCAG
* * * * * *
21672343 TAGCCATTACAATCCCGTCTCTCTGGCAGACGTAGTGCCCGCCCGGTCGCCCGTCTGCTCGTTTC
195 TAGCCATTACAATCCCGTCTCTCTAGAAGACGTAGTGCCCGCCCGGTCGCACGCCTACTCATTTC
21672408 GTCGGTTGGCTTAGGCATACAGAGTTAATTCCTATTCTAAGATCGGACCGAACCGA-GGTTGTGG
260 GTCGGTTGGCTTAGGCATACAGAGTTAATTCCTATTCTAAGATCGGACCGAACCGAGGGTTGTGG
* * * * *
21672472 CAGTCAGATCCATAACACGTAGAAGGGGACCCAGCTGATCCTCGGCTTACGCATCCCACCCCTTT
325 CAGACAGATACATAACACGCAGAAGGGGACCCAGCTGATCCCCGGCTTACGCATCCCACCCCTCT
*
21672537 GGCCCACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGT
390 GGCCCACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCCAGT
* ** * * *
21672602 CTAAGATCGGACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGT
455 CTAACATCAAACCGGACAGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGT
* *
21672667 ATTTTTTTTCACCGGGGCACCATCGCCGGAGCATCAG-TAGAGAACCTGACCGACGGCATTGGGG
520 ATTTTTCTTCACCGGGGCACCATCGCCGGAGCATC-GCCAGAGAACCTGACCGACGGCATTGGGG
21672731 TTCCGACGATCGGGGGGCCGGGGGGTGTGCAC
584 -T-------T-------CCGGGGGGTGTGCAC
*
21672763 ACATGATGTGCGATGGGTGCTGGTACTTCGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
1 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
21672828 GAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
66 GAGAACTCACACCCC-TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
*
21672893 TGTCTAAAATGGGGACATTTTTTTCAAATGGTCACAAAAT-TTGTACACTTTTTTCAAATGCCAG
130 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTTTCAAATGCCAG
* * * *
21672957 TAGCCATTACAATCTCGTCTCTCTAGAAGACGTAGTGCCCGCCCGGTCTCATGCCTACTTATTTC
195 TAGCCATTACAATCCCGTCTCTCTAGAAGACGTAGTGCCCGCCCGGTCGCACGCCTACTCATTTC
* *
21673022 GTCGGTTGGCTTAGGCATACAGAGTTAATTCCTATTCTAAGATCGGATCGAACTGAGGGTTGTGG
260 GTCGGTTGGCTTAGGCATACAGAGTTAATTCCTATTCTAAGATCGGACCGAACCGAGGGTTGTGG
* * * * * ** ** ***
21673087 CAGACATATAGATAGCTCGCAGAGGGGGACCTGGCTGATCCCCGGCTTGTGCATCTTGCCCCTCT
325 CAGACAGATACATAACACGCAGAAGGGGACCCAGCTGATCCCCGGCTTACGCATCCCACCCCTCT
* * * * *
21673152 GGCCGATTGAGCGCCCGCACGCTCGTTTTGTGGGTTGGCATAGGCATACGAAGTTCATTCCCAGT
390 GGCCCACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCCAGT
*
21673217 CTAACATCAAACCGGACAGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGT
455 CTAACATCAAACCGGACAGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGT
* *
21673282 ATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
520 ATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGT
**
21673347 TCCGGGGGGTGTGCGT
585 TCCGGGGGGTGTGCAC
* * * *
21673363 ATATGATGTGCGATTGCTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTC
1 ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
* * * *
21673428 GATAACTCAAACCCCCTTAAAGAGCGTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAG
66 GAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* *
21673493 TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTTTT
130 TGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTT
21673547 AGCTGAATTT
Statistics
Matches: 709, Mismatches: 70, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
600 167 0.24
601 16 0.02
607 1 0.00
614 136 0.19
615 389 0.55
ACGTcount: A:0.22, C:0.25, G:0.25, T:0.27
Consensus pattern (600 bp):
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
GTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTTTTCAAATGCCAGT
AGCCATTACAATCCCGTCTCTCTAGAAGACGTAGTGCCCGCCCGGTCGCACGCCTACTCATTTCG
TCGGTTGGCTTAGGCATACAGAGTTAATTCCTATTCTAAGATCGGACCGAACCGAGGGTTGTGGC
AGACAGATACATAACACGCAGAAGGGGACCCAGCTGATCCCCGGCTTACGCATCCCACCCCTCTG
GCCCACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACATAGGCATACGAAGTTCATTCCCAGTC
TAACATCAAACCGGACAGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGTA
TTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTT
CCGGGGGGTGTGCAC
Found at i:21674976 original size:26 final size:26
Alignment explanation
Indices: 21674946--21674998 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21674936 GTTGACTTAG
* *
21674946 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
21674972 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
21674998 G
1 G
21674999 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:21675135 original size:896 final size:897
Alignment explanation
Indices: 21673202--21676788 Score: 4577
Period size: 896 Copynumber: 4.0 Consensus size: 897
21673192 TAGGCATACG
* * ** *
21673202 AAGTTCATTCCCAGTCTAACATCAAACCGGACAGAGGGTTACGGTAGCACATGCTGGGCTCGGGC
1 AAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGC
* * *
21673267 ATATGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGAC
* * *
21673332 CGACGGCATTGGGG-T-----T--------CCGGGGGGTGTGCGTATATGATGTGCGATTGCTGC
131 CGACGGCATTGGGGTTCCAGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGCTGC
*
21673383 TGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGATAACTCAAACCCCCTTAA
196 TGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAA
*
21673448 AGAGCGTTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
261 AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
21673513 TTTTCAAATGGTCACAAAATCTTATACA-C-TTTTTAGCTGAATTTTTGTGTGCATGCCAACAAA
326 TTTTCAAATGGTCACAAAATCTTGTACATCGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
* *
21673576 AATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCC
391 AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
** ** * * *
21673641 CGAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAATGAGTCGTCTCGCCACGAAACTTCA
456 CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
* * *
21673706 CGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCCGAAA
521 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAGAAA
* * * *
21673771 TACGAAGATGTACCTAAACCCACCTGCCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTTT
586 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT
* * * * * *
21673836 GGCCGGCGAAGTGCACGCCTGCCCGCCCGCCTACTCCTTTCGTCGGTTGGCTTAGGCATACAGAG
651 GGCCGGCGAAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
* * * * * * **
21673901 TTCATTCCCAGTCTAAGATTAGACTAGATCGAGGGTTGCAGTAGCAGGGTCGGTAGCATGCAGAG
716 TTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAG
* * * * *
21673966 AGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGTTGAGTGCCCGCATGC-C
781 GGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
* * * *
21674030 CGTTTCGTGTGTTAACTCAGGCATACGGAGTTCATTCCC-GATCTAAGCATACC
846 C-TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGATCTAAGCATA-T
* * * ** * *
21674083 AAGTTCATTCCTAGCCAAAGATCAAATTGGACCAAGGGTTGC-AGCAGCACATGCTAGGCTCGGG
1 AAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACGA-CAGCACATGCTAGGCTCGGG
* * * * *
21674147 -ATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGT
65 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGA
* * * *
21674211 TCGACGGCATTGGGGTTCTGGAGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGTTGGC
130 CCGACGGCATTGGGGTTC--CAGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGC
* * * *
21674276 TGCTGGTACTTGGCCCTCATAGTGGCCCCTTATCCCTCATGAAACCTCGAGAACTCAAACCCCCA
193 TGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCT
*
21674341 TAAGGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
21674406 CTTTTTTCAAATGGTGAAAAAATCTTGTACA-C-TTTTTAGCCGAATTTTTTTGTGCATGCCAA-
323 CTTTTTTCAAATGGTCACAAAATCTTGTACATCGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
21674468 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
388 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
*
21674533 TTCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
453 TCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
*
21674598 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGATATAAAAATGGCATTTGGCATGCA
518 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCA-TTGGCATGCA
* * *
21674663 AAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCACGGCTTGTGCATCCTGTCT
582 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCT
* * * * * * * *
21674728 TTCTAGCCGACGTAGTGCCTGCCCGCCCGCTCGCTTGCTCGTTTCATCGATTGGCTTAGGCATAC
647 CTCTGGCCGGCGAAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * ** * *
21674793 GGAGTTCATACCCAGTCTAAGATCAGACCAGACCGAGCATTGCGGTAGTAGGATCGGCAGCACAC
712 GGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACAC
* * * *
21674858 AGAGGGGGACCTGACCGATCCTCGGCTTGCGCATCCTGCCCTTCTGGCTGGCTGAGCGCCCGCAC
777 AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCAC
*
21674923 GCTCCTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-TCTAAGCATAT
842 GCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGATCTAAGCATAT
* * * * * * *
21674978 AGAGTTCATTCCCAATCTAAGATCAGACCGGATCGAGGGTTACGATAGAACATACTGGGCTCGGG
1 A-AGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACGACAGCACATGCTAGGCTCGGG
* * * *
21675043 CATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACTTGA
65 CATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGA
* * *
21675108 CCGACGGCATTGGGGTTCCACGATCGGGGGGGCCGAGGGGTGTGCGCACATGATGTGCAATGGGT
130 CCGACGGCATTGGGGTTCCA-GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGCT
*
21675173 GGTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTT
194 GCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTT
* * *
21675238 GAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACAC
259 AAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* **
21675303 TTTTTTCAAATGGTCACAAAATCTTGAACACATCGAGTTTTTAGCTGAATTTTTTTTGTGCACAC
324 TTTTTTCAAATGGTCACAAAATCTTG--TACATC--GTTTTTAGCTGAA-TTTTTTTGTGCATGC
* *
21675368 CAACAAGAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCCAAAAAATTTTAA
384 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
21675433 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCTATTA
449 AAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
21675498 AACTCCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAA-ACCATAAAAATGGCATTGGCA
514 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGA-CATAAAAATGGCATTGGCA
* * *
21675562 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTAGTGCATCTC
578 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCC
* * * ** *
21675627 GTCTCTCTGGCCGGGGTAA-TGCCCGCCCGCCGGCCCGCCCGCTCGTTGAATCGGTTGGCTTAGA
643 GTCTCTCTGGCCGGCG-AAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGG
** * * * * * * *
21675691 CATGTGGAGTTCATTCCCTA-TCTAAGATCAAATTGGACCGAGGGTTACGACAGTAGGATCAGCA
707 CATACGGAGTTCATTCCC-AGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * *
21675755 GCACATAGCGGGGGACCCGACCGATCCCCGGCTTGTGTATCCTGCCCCTCTGGCCGGCTGAGCGC
771 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGC
*
21675820 CCGCACGCTCATTTCGTGGGTTGACTTAGG----C---G-T-A----C-G------G-----
836 CCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGATCTAAGCATAT
* *
21675857 -AGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCACGTGCTAGGCTCGGGC
1 AAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGC
* * ** *
21675921 ATGTGCTGGTGCCGTATTTTTCTTCGCCGGGGCATAATCATCGGAGCATCGCCAGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGAC
* *
21675986 CGACGGCATTGGGGTTCCAGCGATCGGGGGGGCCGGGGGGGTTGTGTACGCACATGTTGTGTGAT
131 CGACGGCATTGGGGTTCCA--GATCGGGGGGGCC-GGGGGG-TGTG--CGCACATGATGTGCGAT
* ** * * *
21676051 GGGTGCTATTTCTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACT-AACACC
190 GGCTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAA-ACC
* *
21676115 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAATGGG
254 CCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
21676180 GATATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGA-TTTTTTGTGC
319 GACACTTTTTTCAAATGGTCACAAAATCTTGTACA--TC--GTTTTTAGCTGAATTTTTTTGTGC
* * * * *
21676244 ATGCAAACAAAAATAGAAGGATCACATCTACCAAGATTGGGGCCAAAACTCCTTTCGAAAAAATT
380 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
* ** *
21676309 TTAAGAAATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
445 TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* *
21676374 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTG
510 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTG
* *
21676439 GCATGCAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
575 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCAT
* * *
21676504 CCCGTCTCTCTGGCCGGCAAAGTGCCCGCCTGCCCGCCCGCCTGCCCACTCGTTTCATTGGTTGG
640 CCCGTCTCTCTGGCCGGCGAAGTGCCCGCCCGCCCGCCCGCCTG----CTCGTTTCATCGGTTGG
* * * * *
21676569 CTTAGGCATACGAAGTTCATTCCCAATCTAAGATCGGACTGGACTGAGGGTTGCGGCAGCAGGAT
701 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGAT
* ** * * * * * * * * *
21676634 CGGTAGCACGTAGAGGGGGACTCGACCAATGCTCAGCTTGAGCATCCCGCCCCTCTGGCCAGTTG
766 CGGCAGCACACAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTG
* ** * * * *
21676699 GGCGCCCGTTCACTCTTTTCGTGGGTTGCCTTAGGCATACGGAGTTCATT-CCTGATCTAAGCAT
831 AGCGCCCGCACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGATCTAAGCAT
21676763 AT
896 AT
*
21676765 GAAGTTCATTCCCAGCCTAAGATC
1 -AAGTTCATTCCCAGTCTAAGATC
21676789 GGATCAGACC
Statistics
Matches: 2336, Mismatches: 294, Indels: 123
0.85 0.11 0.04
Matches are distributed among these distances:
877 130 0.06
878 14 0.01
879 7 0.00
880 358 0.15
881 54 0.02
882 174 0.07
883 1 0.00
884 147 0.06
888 2 0.00
889 1 0.00
890 1 0.00
891 1 0.00
892 1 0.00
893 1 0.00
894 1 0.00
895 174 0.07
896 712 0.30
897 79 0.03
898 3 0.00
899 2 0.00
902 11 0.00
903 265 0.11
904 176 0.08
910 21 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
AAGTTCATTCCCAGTCTAAGATCAAACCGGACCGAGGGTTACGACAGCACATGCTAGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGCCGGAGAACCTGAC
CGACGGCATTGGGGTTCCAGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGCTGC
TGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAAACCCCCTTAA
AGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACATCGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA
AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAGAAA
TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCT
GGCCGGCGAAGTGCCCGCCCGCCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACTAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAG
GGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTC
CTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGATCTAAGCATAT
Found at i:21677835 original size:26 final size:26
Alignment explanation
Indices: 21677798--21677850 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21677788 GTTGACTTAG
*
21677798 GCATACGGAGTTCATTCCCAGTATAA
1 GCATACGAAGTTCATTCCCAGTATAA
*
21677824 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTATAA
21677850 G
1 G
21677851 ATCAAACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTATAA
Found at i:21678569 original size:26 final size:26
Alignment explanation
Indices: 21678533--21678583 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21678523 TTGGCTTAGG
21678533 CATACAGAGTTCATTCCCAATCTAAC
1 CATACAGAGTTCATTCCCAATCTAAC
*
21678559 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAATCTAA
21678584 GATCAAACTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.29, G:0.10, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAC
Found at i:21679361 original size:26 final size:26
Alignment explanation
Indices: 21679325--21679375 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21679315 TTGGCTTAGG
*
21679325 CATACGGAGTTCATTCCCAATCTAAC
1 CATACAGAGTTCATTCCCAATCTAAC
*
21679351 CATACAGAGTTCATTCCCAGTCTAA
1 CATACAGAGTTCATTCCCAATCTAA
21679376 GATCAAACTG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.31, C:0.29, G:0.12, T:0.27
Consensus pattern (26 bp):
CATACAGAGTTCATTCCCAATCTAAC
Found at i:21679534 original size:792 final size:791
Alignment explanation
Indices: 21678008--21680140 Score: 3714
Period size: 792 Copynumber: 2.7 Consensus size: 791
21677998 ACATGATGTT
* * * * * *
21678008 CGATGGGTACCGGTACTTGGCCCTTATATCGGCCCCCTATCCCTCATCAAACCTTGAAAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCATGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * *
21678073 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAATAGCCATTAAAGTGTCTGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
21678138 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
131 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
21678203 TGCATGCCAAGAAAAATACAATGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTTCGAAAAA
196 TGCATGCCAAGAAAAATACAATGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTTCGAAAAA
21678268 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
261 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
21678333 GCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
326 GCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
21678398 TTGGCACATGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
391 TTGGCACATGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
21678463 CATCCCGTTTCTCTGGCCAACGTAGTGCCCGCCCGCCCGTTCGCCCGCTCGTTTCGTCGGTTGGC
456 CATCCCGTTTCTCTGGCCAACGTAGTGCCCGCCCGCCCGTTCGCCCGCTCGTTTCGTCGGTTGGC
*
21678528 TTAGGCATACAGAGTTCATTCCCAATCTAACCATACAGAGTTCATTCCCAGTCTAAGATCAAACT
521 TTAGGCATACGGAGTTCATTCCCAATCTAACCATACAGAGTTCATTCCCAGTCTAAGATCAAACT
*
21678593 GGACCGAGGGTTGCAGCAGCACATGCTGGGTCGGGCATGTACTGGTGTCACATTTTTCTTTGTCG
586 GGACCGAGGGTTGCAGCAGCACATGCTGGGTCGGGCATGTACTAGTGTCACATTTTTCTTTGTCG
21678658 GGGCACCATCATCGGAGCATCGTCAGACAACCTGACCGGTGGCATTAGAGTTCATTCCCAGTCTA
651 GGGCACCATCATCGGAGCATCGTCAGACAACCTGACCGGTGGCATTAGAGTTCATTCCCAGTCTA
* *
21678723 AGATCGGACTGAGCCAAGGGTTGCTGCAGCAGGAGTGCCAGTATGCAAACTGGGACTCGATCGAT
716 AGATCGGACTGAACCAAGGGTTGCTGCAGCAGGAGTGCCAGTATGCAAACGGGGACTCGATCGAT
21678788 CCCCGGCTTAGG
781 -CCCGGCTTAGG
21678800 CGATGGGTGCTGGTACTTGGCCCATGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCATGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* *
21678865 ACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCTAGTAACCATTAAAGTGTCTGAAAT
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
21678930 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
131 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
21678995 TGCATGCCAAGAAAAATACAATGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTTCGAAAAA
196 TGCATGCCAAGAAAAATACAATGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTTCGAAAAA
* *
21679060 ATTTTAAAAAATCCCGAAGCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
261 ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
21679125 GCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
326 GCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
21679190 TTGGCACATGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
391 TTGGCACATGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
21679255 CATCCCGTTTCTCTGGCCAACGTAGTGCCCGCCCGCCCGTTCGCCCGCTCGTTTCGTCGGTTGGC
456 CATCCCGTTTCTCTGGCCAACGTAGTGCCCGCCCGCCCGTTCGCCCGCTCGTTTCGTCGGTTGGC
21679320 TTAGGCATACGGAGTTCATTCCCAATCTAACCATACAGAGTTCATTCCCAGTCTAAGATCAAACT
521 TTAGGCATACGGAGTTCATTCCCAATCTAACCATACAGAGTTCATTCCCAGTCTAAGATCAAACT
21679385 GGACCGAGGGTTGCAGCAGCACATGCTGGGTCGGGCATGTACTAGTGTCACATTTTTCTTTGTCG
586 GGACCGAGGGTTGCAGCAGCACATGCTGGGTCGGGCATGTACTAGTGTCACATTTTTCTTTGTCG
21679450 GGGCACCATCATCGGAGCATCGTCAGACAACCTGACCGGTGGCATTAGAGTTCATTCCCAGTCTA
651 GGGCACCATCATCGGAGCATCGTCAGACAACCTGACCGGTGGCATTAGAGTTCATTCCCAGTCTA
21679515 AGATCGGACTGAACCAAGGGTTGCTGCAGCAGGAGTGCCAGTATGCAAACGGGGACTCGATCGAT
716 AGATCGGACTGAACCAAGGGTTGCTGCAGCAGGAGTGCCAGTATGCAAACGGGGACTCGATCGAT
21679580 CCCGGCTTAGG
781 CCCGGCTTAGG
21679591 CGATGGGTGCTGGTACTTGGCCCATGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
1 CGATGGGTGCTGGTACTTGGCCCATGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
* * * *
21679656 ACCCCCTTAAAAAGCATTTGAGATTTTACAGTTTTGCTG-TCAGTAGCCATTAAAATGTCTAAAA
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCT-AGTAGCCATTAAAGTGTCTGAAA
*
21679720 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
130 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * * * *
21679785 GTCCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAACACTCCTTCCGAAAA
195 GTGCATGCCAAGAAAAATACAATGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTTCGAAAA
* * * ** *
21679850 AATTTTAAAAAATCCTGAACCCCAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCT
260 AATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
* * * * *
21679915 TGCCTTGAAACTTCACGTCAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCC
325 TGCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
21679980 ATTGG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
390 ATTGGCACATG--GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
* * * * * * ** ** *
21680043 ACGCATCCCGTCTATCTGGTCGACGTAGTGCCCGGCCGCTAGCCCGGCCGCTCGTTTCGTCGGTT
453 GCGCATCCCGTTTCTCTGGCCAACGTAGTGCCCGCCCGCCCGTTCGCCCGCTCGTTTCGTCGGTT
* *
21680108 GGCTTAGGCATATGGAGTTCATTCCCAGTCTAA
518 GGCTTAGGCATACGGAGTTCATTCCCAATCTAA
21680141 GATCAGATCA
Statistics
Matches: 1280, Mismatches: 58, Indels: 7
0.95 0.04 0.01
Matches are distributed among these distances:
789 4 0.00
790 1 0.00
791 512 0.40
792 763 0.60
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (791 bp):
CGATGGGTGCTGGTACTTGGCCCATGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAGAAAAATACAATGATCATGTCTACCAAGTTTGGAGCCAAAACTCCTTTCGAAAAA
ATTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACATGGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
CATCCCGTTTCTCTGGCCAACGTAGTGCCCGCCCGCCCGTTCGCCCGCTCGTTTCGTCGGTTGGC
TTAGGCATACGGAGTTCATTCCCAATCTAACCATACAGAGTTCATTCCCAGTCTAAGATCAAACT
GGACCGAGGGTTGCAGCAGCACATGCTGGGTCGGGCATGTACTAGTGTCACATTTTTCTTTGTCG
GGGCACCATCATCGGAGCATCGTCAGACAACCTGACCGGTGGCATTAGAGTTCATTCCCAGTCTA
AGATCGGACTGAACCAAGGGTTGCTGCAGCAGGAGTGCCAGTATGCAAACGGGGACTCGATCGAT
CCCGGCTTAGG
Found at i:21681186 original size:26 final size:26
Alignment explanation
Indices: 21681150--21681202 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21681140 GTTGACTTAG
21681150 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21681176 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21681202 G
1 G
21681203 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21681560 original size:873 final size:869
Alignment explanation
Indices: 21679590--21683661 Score: 4771
Period size: 874 Copynumber: 4.6 Consensus size: 869
21679580 CCCGGCTTAG
* * *
21679590 GCGATGGGTGCTGGTACTTGGCCCATGTATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
1 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCA
* * * * *
21679655 CACCCCCTTAAAAAGCATTTGAGATTTTACAGTTTTGCTGTCAGTAGCCATTAAAATGTCTAAAA
65 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
21679720 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
130 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
21679785 GTCCATGCCAAAAAAAAAACAAGGATCACGTCTACCAAGTTTGGGGCCAACACTCCTTCCGAAAA
195 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * *
21679850 AATTTTAAAAAATCCTGAACCCCAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCT
260 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
21679915 TGCCTTGAAACTTCACGTCAAGCCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCC
325 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
21679980 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
390 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
21680045 GCATCCCGTCTATCTGGTCGACGTAGTGCCCGGCCGCTAGCCCGGCCGCTCGTTTCGTCGGTTGG
455 GCATCCCGTCTCTCTGGTCGACGTAGTGCCC-GCC-C--G--C--CCGCTCGTTTCGTCAGTTGG
* * *
21680110 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGATCA-GAT-GAAGGGTTGCAGTAGCAAG
512 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT--GA-CAGGATCG-AGGGTTGCAGCAGCAAG
* * ** * * *
21680173 ATCGACAGCACATAGAAGGGTTCCCGGTCGATCCCC-GCTTGTGCATTCCACCCCTCTGCCTGGC
573 ATCGACAGCACGTAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCA-T-C-CCGC-C--CCT-GC
* * *
21680237 TGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACATAGTTCATTCCCAGTCTAAGCG
631 TGA-------CA-GCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCA
* ** *
21680302 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGTAGCACATGCTAGGCTC
687 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTC
* * * * *
21680367 GGACATGTGCTGTTGTCACATTTTTCTTCACTGGGGCACCATCGTCGGAGCATCGTCAGAGAACC
752 GGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGTACC-T-GTC-GAGC-TCG---GAGAACC
* * *
21680432 TGACCGGCGGCATTGGGGTTCC-AGCGATCGGGGGGCC-GGGGGG-GTGCGCACATGATGG
810 TGACCGACGGCATTGGGGTTCCGA-CGATAGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* * *
21680490 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACACA
1 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT-CCTCATCAAACCTCGAGAACTCA
* *
21680555 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGCCTGAAA
65 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
21680620 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTGTTTT
130 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
21680685 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGTCGAAACTCCTTCCAAAAA
195 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** *
21680750 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
260 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
21680815 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGC
325 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** * * *
21680880 AGTGGCACACAGCAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACAGCTTGC
390 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * **
21680945 ACATCCCGTCTCTTTGGTCGACGTTGTGCCCGCCCGCTCGCTCGTTTCGTCAGTTTACTTAGGCA
455 GCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCA
* * * *
21681010 TACGAAGTTCATTCCTAGTCTAAGATGACACTGGATCGAGGGTTACAGCAGCAGGATCGGCAGCA
520 TACGAAGTTCATTCCCAGTCTAAGATGACA--GGATCGAGGGTTGCAGCAGCAAGATCGACAGCA
**
21681075 CGTAGAGGGGGACCCAGTCGATCCCCAACTTGCGCATCCCGCCCCT-CTGA-ATGCTCGTTTCGT
583 CGTAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTGCTGACA-GCTCGTTTCGT
*
21681138 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTGCCAGTCTAAG
647 GGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * *
21681203 ATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGACTTGGGCATGTGCTGGTGCTGCATTTT
711 ATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT
* * *
21681268 TCTTCA-TCGGGGTGCC-GTC-A-C-CGGAGAACTTGACCGACGGCATAGGGGTTCCGACGATCA
776 TCTTCACT-GGGGTACCTGTCGAGCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT-A
21681328 GGGGGGCCGAGGGGGTGTGCTGCGCACATGATGT
839 GGGGGGCCG-GGGGG-GTG-TGCGCACATGATGT
21681362 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCCATCAAACCTCGAGAACTC
1 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC-T-CATCAAACCTCGAGAACTC
* *
21681427 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTTAA
64 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
21681492 ATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
129 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
21681557 TGTGCATGCCAAAAAAAAATACAAGGATCATGTCCA-CAGTGTTTAGGGCCAAAAATCCTTCTGA
194 TGTGCATGCC-AACAAAAATACAAGGATCACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGA
* * *
21681621 AAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTGG
257 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
**
21681686 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACAAATTTACAAGCCATAAAAAT
322 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * * * *
21681751 GGCATTGGCACACTGCAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCAACGGCT
387 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
21681816 TGTGCATCCCGTCTCTTTGG-CTGACGTAGTGCCCGCTCACCCACCCACCCGCTCATTTCGTCAG
452 TGCGCATCCCGTCTCTCTGGTC-GACGTAGTGCCCG--------CCCGCCCGCTCGTTTCGTCAG
* * * ** *
21681880 TTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGACCGGATCGAGGGTTGTGGCAACA
508 TTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGAT--GACAGGATCGAGGGTTGCAGCAGCA
* * * * *
21681945 GGATCGACAGCACGCAGAGGGGGACCC-GATCGATCCTCGGCTTACGCATCCTGACCCTCTGGCT
571 AGATCGACAGCACGTAGAGGGGGACCCAG-TCGATCCCCGGCTTGCGCATCCCG-CCC-CT-GC-
* * *
21682009 GGTTGAGCGCCCGCAAGCTGGTTTTGTGGGTTGACATAGGCATACTGAGTTCATTCCCAGTCTAA
631 ---TGA-------C-AGCTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAA
* * *
21682074 GCGTACGGAGTTCATTCCCAGTCTAAGATC-GCACCGGACCGAGGGTTGCGACAGCACACGCTGG
684 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGACAGCACATGCTGG
* * *
21682138 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCACTGGGGCACCATTGTCGGAGCATTGTCGGAG
748 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGTACC--TGTC-GAGC----TCGGAG
* * * *
21682203 AACCTGACCGATGGCATTGGGGTTCCGACGATAGGGGGGTCGGGGGGGGTTTGCGTACATGATGT
806 AACCTGACCGACGGCATTGGGGTTCCGACGATAGGGGGG-CCGGGGGGGTGTGCGCACATGATGT
*
21682268 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG---CC--GCCT-AT-----C-C-----CTCAC
1 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCGAGAACTCAC
* *
21682316 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCAAGTAGCCAATTAAA-AGTCTGAAA
66 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAA
*
21682380 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTAT-GAGTTTTTAGCTG-ATGTTTT
130 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAAT-TTTT
* * *
21682443 TTGTGCATTCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCG-A
193 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * **
21682507 AAAATTTTAAAAAATCCCGAACCACAAAAAGTTTTGAAAATCGTGAAAAATATAAAACGAGTCAC
258 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
* *
21682572 CGTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATG
323 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
21682637 GCATTGGCATGCAGAAATATAAAGATGT-ACTGAAACCCACCTACCACCCTATCGATCCACGGCT
388 GCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
21682701 TGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCTGCCCACTCGTTTCTTCAGT
452 TGCGCATCCCGTCTCTCTGGTCGACGTAGTG--C-CC-G-CC--C-GCCCGCTCGTTTCGTCAGT
* * * *
21682766 TGGCTTAGGCATACGAAGTTCATT-CCAGTCTAAGACCGGACAGGACCAAGGGTTGCGGCAGCAA
509 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGA--TGACAGGATCGAGGGTTGCAGCAGCAA
* * *
21682830 GATCGGCAGCACGTAGAGGGGGA-CCAGTCGATCCTCGGCTTGTGCATCCCGCCCCT-CTG---G
572 GATCGACAGCACGTAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTGCTGACAG
* * * * * * * * ***** * *
21682890 C-CG--GC-TGAG-CGCCTACACGC-T-C-ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATT
637 CTCGTTTCGTGGGTTGACT-TAGGCATACGAGTTCATTCCCAGTC-TAAGCATACGGAGTTCATT
*
21682947 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCACATGCTGGGCT-GGGCATGTGCTGG
700 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
* * * ** * *
21683011 TGCCGCATTTTTCTTCCCTAGGGCACCATCACCGGAGCATCGCTGGAGAACCTAACCGGCGGCAT
765 TGCCGCATTTTTCTTCACTGGGGTACC-T-GTC-GAGC-T--C-GGAGAACCTGACCGACGGCAT
* * * ** ** *
21683076 TGGGGTTCCGGCGATTGGAGGGTAGTCGGGGTGTGCACACATGATGT
823 TGGGGTTCCGACGATAGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
21683123 GCGATGGGTGCTGGTACTTGGCCCTTATACTGGCCCCCTATCCCCTATCAAACCTCGAGAACTCA
1 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTC-ATCAAACCTCGAGAACTCA
* * *
21683188 AACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAA
65 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
21683253 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATGTTTTT
130 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTT
* * *
21683317 TGTGCACGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAAA
194 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
21683382 AAATTTTAAAAAATCCCGAACTGTAAAAAGTTTTGAAAATCGTTAAAAATAGAAAACGAGTCGTC
259 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
21683447 TTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGG
324 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
21683512 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
389 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
21683577 CGCATCCCGTCTCTCTAGTCGGCGTAGTGCCCGCCCGCCCCCTCATTTCGTCGGTTGGCTTAGGC
454 CGCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGC
21683642 ATACGAAGTTCATTCCCAGT
519 ATACGAAGTTCATTCCCAGT
21683662 TTGAGCAAAC
Statistics
Matches: 2763, Mismatches: 303, Indels: 245
0.83 0.09 0.07
Matches are distributed among these distances:
853 1 0.00
855 52 0.02
856 86 0.03
857 63 0.02
858 4 0.00
859 3 0.00
860 8 0.00
862 2 0.00
863 1 0.00
864 2 0.00
866 69 0.02
867 16 0.01
868 1 0.00
869 9 0.00
870 2 0.00
871 6 0.00
872 63 0.02
873 327 0.12
874 461 0.17
875 4 0.00
876 1 0.00
877 137 0.05
879 1 0.00
881 3 0.00
882 117 0.04
883 26 0.01
884 60 0.02
885 242 0.09
886 44 0.02
887 129 0.05
888 9 0.00
889 4 0.00
890 8 0.00
891 1 0.00
892 96 0.03
893 9 0.00
894 1 0.00
896 1 0.00
897 1 0.00
898 141 0.05
899 5 0.00
900 442 0.16
901 5 0.00
903 3 0.00
904 1 0.00
906 46 0.02
907 2 0.00
908 12 0.00
909 36 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (869 bp):
GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGGCAT
ACGAAGTTCATTCCCAGTCTAAGATGACAGGATCGAGGGTTGCAGCAGCAAGATCGACAGCACGT
AGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTGCTGACAGCTCGTTTCGTGGGT
TGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
ACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
ACTGGGGTACCTGTCGAGCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATAGGGGGGC
CGGGGGGGTGTGCGCACATGATGT
Found at i:21685485 original size:26 final size:26
Alignment explanation
Indices: 21685447--21685499 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21685437 GTTGACTTAG
21685447 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
21685473 GCATATGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21685499 G
1 G
21685500 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21688183 original size:26 final size:26
Alignment explanation
Indices: 21688147--21688199 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21688137 GTTGACTTAG
21688147 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21688173 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21688199 G
1 G
21688200 ATTGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21688626 original size:905 final size:900
Alignment explanation
Indices: 21683608--21690673 Score: 8601
Period size: 905 Copynumber: 7.9 Consensus size: 900
21683598 GCGTAGTGCC
* * * * * * * * * *
21683608 CGCCCGCCCCCTCATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTTTGAGCAAACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * * * *
21683673 GAGTTCATTCCCAGTCTAAAATCGGAC-CGAACTGAGGGTTGCGGCAGCACATGC-GTGGTTCAG
66 GAGTTCATTCCCAGTCTAAGATCGGACTAG-ACCGAGGGTTGTGGCAGCACATGCTG-GGCTCGG
21683736 GCATGTGCTGGTGCCGCATTTTTCATT-GTCGGGGCACCATCGCCGGAGCATCG-CTGGAGAACC
129 GCATGTGCTGGTGCCGCATTTTTC-TTCGTCGGGGCACCATCGCC-GAGCATCGTC-GGAGAACC
* * * * *
21683799 TGACCGGCGGCATTGGGGTTTCGACAATCGAGGGGGCCGGGGGGTGTACGCACATGATGTGCAAT
191 TGACCGGCGGCATTGGGGTTCCG-CGATCAAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
* *
21683864 GGGTGCTGGTACTTGGCGCTTATATTGGCCCCCTTTCCCTCATCAAACCTCGAGAACTCACACCC
255 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* * * *
21683929 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAATTGCCATTAAAGTGTCTAAAATGGGG
320 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* *
21683994 ACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCA
385 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * *
21684059 TGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGGCAAAACTCCTTTCGAAAAAATTT
450 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
*
21684124 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCTA
515 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * * * *
21684189 TGAAATTTCACGTGAACGCTTAAGGGACCAGTGTATGAATTTACATGCCATAAAAATGCCATTGG
580 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
21684254 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATC
645 CACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * *
21684319 CCGTCTCTCTGGCTGGCGTAGAGCCCGCCCGCCCGCCCGCCCCCCCTCGTTTCATCGGTTCGTTT
710 CCGTCTCTCT-GCTGGCGTAGTGCCCGCCCGCCCGCCCG--CCCGCTCGTTTCGTCGGTTGGCTT
* * * ** * * ** * * * *
21684384 AGGCATACGAAGTTCATTCCTAGTCTAATATCAGATTGAACCTAGGGTTGCAGTAGTAAGACCGA
772 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA
* ** * * * * *
21684449 CAACACACAAAGGGGGACTCGGCTGATCCCCGGCTTGC-CATCCTACCCCTCTGGCCGGCTGAG
837 CAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * * **
21684512 CGCTCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAAGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * * *
21684577 AAGTTCATTCCCAGTCTAAGATC-AAATCGGACCGAGGGTTGTGGTAGCACATGCTGGGCTCGGG
66 GAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
* * * * * *
21684641 CATGTGCTGGTGTCGTATTTTTCTTCGGCGGGACACCATCACCGGAGCATCGTCGAAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC-GAGCATCGTCGGAGAACCTGA
* * * * *
21684706 CCGGCGGCATTGGGGTTCTGGCGATCAGGGGGGCCAGGGGGGTGTACGCATATGATATGCGATGG
194 CCGGCGGCATTGGGGTTC-CGCGATCAAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGG
* * *
21684771 GTGCTGGTACTTGGCCCTTAAATTGGCCCCCTATCCCTCA-CAAACCTCAAGAACTCTCACCCCC
257 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * * *
21684835 TTAAAGAGCATTTGAGATTTTACAGGTTTGCCT-CCAGTAGCAATTAAAGTGCCTAAAATAGGGA
322 TTAAAGAGCATTTGAGATTTTACAGGTTTG-CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
21684899 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATGTTTTTCGTGCA
386 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCA
* * * *
21684963 TGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGACCAAAACTCCTTTCAAAAAAATTT
450 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * *
21685028 TAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCC
515 TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG-CC
* * *
21685093 TTGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAACATGGCATTG
579 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * * *
21685158 GCACATATAAATATGGAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGACTTGCGCAT
644 GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
21685223 CCCGTCTCTCTGGCCGGCGCAGTGCCCGCCCGCCTGCACGCTCGCTCGTTTCGTCGGTTGGCTTA
709 CCCGTCTCTCT-GCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * ** *
21685288 GGCATACGGAGTTCATTCCTAGTCTAAGAT-TGACCGGACTGAGGGTTGTGGCAATAGGATTGAC
773 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGAC
* * * * *
21685352 AGCACGTAGAGGGGGGCCCGGCCGATCCCCTGCTTGCGCAT-CTCGCACCTCTGGCCGGTTGAG
838 AGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAG
*
21685415 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * *
21685480 GTGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * * * **
21685545 ATGTGCTGGTGGCACATTTTTCTTC-ACTGGGGCACCATCGTCGAAGCATCACCGGAGAACCTGA
131 ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGCCG-AGCATCGTCGGAGAACCTGA
* * * *
21685609 CCGGTGGCATTGGGGTTCCAGCGATC--GGGGGGCAGGGGGTGTGCGCACATGATGTGTGATGGG
194 CCGGCGGCATTGGGGTTCC-GCGATCAAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
21685672 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
258 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
21685737 TAAAGAGCATTTGAGATTCTACAGTTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
323 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
21685802 CTTTTTTCAAATGGTTACAAAATCTTGTACACTTCCAGTTCTTAGCTGAATTTTTTTGTGCACGC
388 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
21685867 CAACAAAAATACAAGG-TCA-----ACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
453 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
21685926 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTTCCATGA
518 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
21685991 AACTTCACGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
583 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
* * * *
21686056 GCAAAAATATGAAGATGTGCCTAAACCCACCCACCACCCTATCGATCCATGGCTTGCGCATCCCG
648 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
21686121 TCTCTCTGGTCGGCGTAGT------------GCCCGCCCGCTTGTTTCGTCGGTTCGCTTAGGCA
713 TCTCTCTGCT-GGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * *
21686174 TACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCGACAGCCA-GATC-AGCAA
777 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAG-CAGGATCGA-CAG
* * * * * *
21686237 CACGTAGAGTGGGACCCGGCCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCAGACTGAG
840 CACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * * * * *
21686298 CACCCGCACACTTGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCGCAGTCTAAGCGTATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * ** *
21686363 AAGTTCATTCCCAGTCTAAGATCGAATCT-GACCGAGGGTTGTGATAGCACATGCTAGGCTCGGG
66 GAGTTCATTCCCAGTCTAAGATCGGA-CTAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
* * **
21686427 CATGTGCTGGTGCCACAATATTTCTTCCCCGGGGCACCATCACCGAAGCATCGCCGAGCATCGTC
130 CATGTGCTGGTGCCGC-ATTTTTCTTCGTCGGGG------CA-C----CATCGCCGAGCATCGTC
* * * ** * * *
21686492 GGAGAACCTGACCGACGACATTGCGGTTCCGACGATCGGGGGGGCCGGGGGGTGTACGCCCATGT
183 GGAGAACCTGACCGGCGGCATTGGGGTTCCG-CGATCAAGGGGGCCGGGGGGTGTGCGCACATGA
* * * *
21686557 TGTACGATGGGTGCTGGTACTTGGCCCCTATATTGGCCCCCTATCCTTCA-CAAACCTTGAGAAC
247 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* *
21686621 TCTCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTG
312 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
21686686 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTGGAGTTTTTTGCTGAAGTTT
377 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTT
*
21686751 TTTT-TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCG
441 TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
* *
21686815 AAAAAATTTTAGAAAATC-CAGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
506 AAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
* * * *
21686879 CGTGTGGCCATGAAACATCACGT-ACATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
570 CGTCTTGCCATGAAACTTCACGTGA-AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * * *
21686943 ATTGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAACTACCACCCAATAGATCCACG
634 AATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
* *
21687008 GCTTGTGCATCCCGTCTCT-TAGGCCT-GCGTAGTGCTCGCCCGCCCGCCCGCCTGCCCGCTCGT
699 GCTTGCGCATCCCGTCTCTCT--G-CTGGCGTA--G-T-GCCCGCCCGCCCGCCCGCCCGCTCGT
* * * * * *
21687071 TTCGACGGTTGGCTTAGGCATATGAAGTTCATTCCCTGTCTAAGATCAGACCAGACCAAGGGTT-
757 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG
* * * * *
21687135 TCGGCAGCAGGATTGACAGCATGCAGAGGGGGACCTGACCGATCCCCGGCTTGCGCAT-CTCACC
822 T-GGCAGCAGGATCGACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCC
21687199 CCTCTGGCCGGCTGAG
885 CCTCTGGCCGGCTGAG
* * * *
21687215 CGCCTGAACGCTAGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * * *
21687280 CAGTTCATTCCTAGTCTAAGATCAGA-TCAGACCGAGGGTTGTGGCAGCACATGCCGGGCTCGAG
66 GAGTTCATTCCCAGTCTAAGATCGGACT-AGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
* * * * *
21687344 CATGTGCTGGTCCCGTATTTTTCTTCGCCGGGGCACCATCGCCGGAGCATCGCCAGAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC-GAGCATCGTCGGAGAACCTGA
** * * * *
21687409 CCGATGTCATTGAGGTTCCGACGAT-AAGGGGGGCCGGGGGGTGTGTGCACATGATGTGTGATGG
194 CCGGCGGCATTGGGGTTCCG-CGATCAA-GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGG
* *
21687473 GTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCA-CAAACCTCGAGAACTCTCACCCCC
257 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
21687537 TTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAT
322 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
21687602 AATTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTGCTGAATTTTTTTGTGCATG
387 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
21687667 CCAACAAAAATACAAGGATCACATCTAGCAAGTTTGGGGCCAAAA-TCCTTCCGAAAAAGTTTTA
452 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
*
21687731 AAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
517 AAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
21687795 GAAACTTAACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
581 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
21687860 ATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
646 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * **
21687925 CATTTCTTTGACTGACGTAGTGCCCGCCTGCCCGCCCACCCGCTCGTTTCGTCGACTGGCTTAGG
711 CGTCTCTCTG-CTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** ** *
21687990 CATACGGAGTTCATTCCCAGTCTAATACCAGATAGGATTGAGGGTTGTAGCAGCAGGATCGACAG
775 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
* * * *
21688055 CACGTAG-GTGGGACCCGACTGATCCCCGGCTTGCGCATCCTGCCCCTTTGGTCGGCTGAG
840 CACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
*
21688115 CGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* * * *
21688180 GAGTTCATTCCCAGTCTAAGATTGGACTAGACTGAGGGTTGTGACAGCACATGCTGGGCTAGGGC
66 GAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* * * * *
21688245 ATGTACTGTTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGCAGAACATGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCC-GAGCATCGTCGGAGAACCTGAC
* *
21688310 CGACGGCATTGGGGTTCCAGCGATCAAGGGGGCCGGGGGGGGTTGTGCACACATGATGTGCGATG
195 CGGCGGCATTGGGGTTCC-GCGATCAAGGGGGCC--GGGGGG-TGTGCGCACATGATGTGCGATG
* * *
21688375 GCTGCTGGTACTTGGCCCTTATATTAGCCCGCTATCCCTCATCAAACCTCGAGAACTCACACCCC
256 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
21688440 CTTAAAGAGTATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
321 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
*
21688505 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTT
386 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
** * *
21688570 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTGAAAACTCTTTCCGAAAAAACTTT
451 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * *
21688635 AAATAATCTCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCAT
516 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
21688700 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATAAATTTACAAGCCGTAAAAATGGCATTGGC
581 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
21688765 ACATAGAAATACGAAGATGTGCCAAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCC
646 ACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * * *
21688830 CATCTCTTTGGTCGGCGTAGTGCCCGCCCACCCGCCCACTCGTTCGTTTCGTCAGTTGGCTTAGG
711 CGTCTCTCTGCT-GGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
21688895 CATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACCGAGGGTTGT-G--GC---A--G-CA-
775 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAG
* ** * * *
21688950 CAC--AGAGGGTGACCCGACCGATCCCTAGCTTGCGCAT-CTCGCCCTTCTGGCCGGTTGAT
840 CACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCGGCTGAG
* * * * ** * *
21689009 CGCCCGTACACTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCGTAGTCTAAGAATAAG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
** * *
21689074 GAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGC
66 GAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
* *
21689139 ATGTGCTGGTGCCGCATTTTTC-T--T-----CA-C--CG--GAGCATCGCCGGAGAACCTGACT
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAGCATCGTCGGAGAACCTGACC
* ** *
21689191 GGCGGCATTGGGGCTCCG-G-T------GATCGGGGGGTGTGCGCACATGATGTGCGATGGCTGC
196 GGCGGCATTGGGGTTCCGCGATCAAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
21689248 TGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCAAGAACTCACACCCCCTTAA
261 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
21689313 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTT
326 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
21689378 CTTTCAAATGCTCAGAAAATCTTGTACACTTCGAGTTTTTAGCTGACTTTTTTTGTGCATGCCAA
391 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
*
21689443 TAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
456 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* ** * * *
21689508 AGCTCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTAGCAATGAAAC
521 ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* *
21689573 TTCACGTGAAGGCTTAAGGGACCATTGTGTGAATTTACGAGCCATAAAAATGGCATTGGCGGAC-
586 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC--ACG
* * * * *
21689637 -AGAAATATAAAGATTTGCCTAAACCCACATACCACCGTATCGATACACGGCTTGCGCATCCC--
649 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * * * * *
21689699 ATCTCT-CTGGC--CG-G--AG-CAG--TGCCCGCCCGTTTGTTTTGTCAGTTGGCTTAGGCATA
714 CTCTCTGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
** * ** * *
21689755 CGGAGTTCATTCCCAGTCTAAGATTGGACCGGATCGAGGGTTACGGTAGCAGGATC-AGCAGCAG
779 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGA-CAGCAC
* * * * * * * * * *
21689819 GCAGAGGGGGACCTGATCGATTCCTGGCTTGCGCATCCCGCACCACTAGCCGACTGAG
843 GTAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
* * * ** *
21689877 CGCGCGTACACTCGTTTAATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
* ** * *
21689942 GAGTTCATTCCCGGTCT-AG-TACTGGA-TCAGACCGAGGGTTACGGAAGCAAATGCTGGGCTCG
66 GAGTTCATTCCCAGTCTAAGAT-C-GGACT-AGACCGAGGGTTGTGGCAGCACATGCTGGGCTCG
* * * * ***
21690004 GGCATTTGCTGGTGTCACATTTTTC-TC-TACCGGGTCACCATAATCGAAGCATCGTCGGAGAAC
128 GGCATGTGCTGGTGCCGCATTTTTCTTCGT--CGGGGCACCATCGCCG-AGCATCGTCGGAGAAC
* * * * * *
21690067 CTGACCCGTGGCATTGGGGTTCCGGTGGTCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTCCG
190 CTGACCGGCGGCATTGGGGTTCC-GCGATCAAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCG
*
21690132 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAC
253 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * *
21690197 CCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATGG
318 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
*
21690262 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
383 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* ** * ** * *
21690327 CATGCCAACAAAAATACAAGGATCACGTCCACCAAAATTAGGGTGAAAAATCCTTCCAAAAAAAA
448 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAAA
** * * ** * * *
21690392 TTAAAAAAAATCTCGAACCGCAAAAATTTTTGAAAATCGTGAAAAAAAGAAAACGAGTCATCTTG
512 TTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* * * **
21690457 CCACGAAATTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTATGAGCCATAAAAATGGCAT
577 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
21690522 TGGCACATAGAAATATGAAGATTTGCCTAAACCCACATACCACCCTATCGATCCAAGGCTTGCGC
642 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
21690587 ATCCCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
707 ATCCCGTCTCTCT-GCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * *
21690644 TAGGCATACAGAATTTATTCCGAGTCTAAG
771 TAGGCATACGGAGTTCATTCCCAGTCTAAG
21690674 CATATGGAGT
Statistics
Matches: 5359, Mismatches: 653, Indels: 307
0.85 0.10 0.05
Matches are distributed among these distances:
856 70 0.01
857 1 0.00
858 1 0.00
859 3 0.00
861 1 0.00
862 2 0.00
864 3 0.00
865 3 0.00
866 7 0.00
867 3 0.00
868 606 0.11
869 8 0.00
870 2 0.00
871 2 0.00
876 2 0.00
877 2 0.00
878 1 0.00
879 1 0.00
880 34 0.01
881 1 0.00
882 91 0.02
883 206 0.04
884 17 0.00
885 3 0.00
886 2 0.00
890 2 0.00
891 6 0.00
892 255 0.05
893 191 0.04
894 347 0.06
895 258 0.05
896 79 0.01
897 55 0.01
899 2 0.00
900 311 0.06
901 479 0.09
902 67 0.01
903 317 0.06
904 634 0.12
905 719 0.13
906 294 0.05
909 1 0.00
910 2 0.00
915 1 0.00
916 18 0.00
917 248 0.05
918 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATG
GAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGAGCATCGTCGGAGAACCTGACC
GGCGGCATTGGGGTTCCGCGATCAAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
CTCTGCTGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGCAGCAGGATCGACAGCACGTA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAG
Found at i:21689945 original size:26 final size:26
Alignment explanation
Indices: 21689909--21689959 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21689899 GTTGACTTAG
21689909 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21689935 GCATACGGAGTTCATTCCCGGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
21689960 GTACTGGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21694549 original size:26 final size:26
Alignment explanation
Indices: 21694519--21694571 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21694509 GTTGACTTAG
21694519 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21694545 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21694571 G
1 G
21694572 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21695452 original size:26 final size:26
Alignment explanation
Indices: 21695423--21695475 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21695413 GTTGACTTAG
*
21695423 GCATACGAAATTCCTTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
* * *
21695449 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATTCCCAGTCTAA
21695475 G
1 G
21695476 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAATTCATTCCCAGTCTAA
Found at i:21696307 original size:26 final size:26
Alignment explanation
Indices: 21696271--21696323 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21696261 GTTGACTTAG
21696271 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21696297 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21696323 G
1 G
21696324 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21697633 original size:26 final size:26
Alignment explanation
Indices: 21697603--21697655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21697593 GTTGACTTAG
21697603 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
21697629 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21697655 G
1 G
21697656 ATCAACCCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21697743 original size:14 final size:14
Alignment explanation
Indices: 21697724--21697753 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
21697714 GCATTTTTCT
21697724 TCGCCAGGGCACCA
1 TCGCCAGGGCACCA
*
21697738 TCGCCAGGGCATCA
1 TCGCCAGGGCACCA
21697752 TC
1 TC
21697754 AGAGAACCTG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.20, C:0.40, G:0.27, T:0.13
Consensus pattern (14 bp):
TCGCCAGGGCACCA
Found at i:21698540 original size:26 final size:26
Alignment explanation
Indices: 21698504--21698559 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
21698494 TGGGTTTGCT
*
21698504 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAATC
21698530 TAAGCATACGGAGTTCATTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
21698556 TAAG
1 TAAG
21698560 ATCGGACCGA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:21699432 original size:26 final size:26
Alignment explanation
Indices: 21699396--21699448 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21699386 GTTGACTTAG
*
21699396 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21699422 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21699448 G
1 G
21699449 ATTAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21700504 original size:716 final size:713
Alignment explanation
Indices: 21699422--21701628 Score: 3047
Period size: 743 Copynumber: 3.0 Consensus size: 713
21699412 CCTAGTCTAA
* * * * *
21699422 GCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATATAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTGGG
* * * * *
21699487 CTCGAGCATGTGCTGGTGCCACATTTTTCTTTGCC-AGGGCACCATCGCCGGAGCTTCGCTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGA-GGCACCATCGTCGGAGCATCGC-GGAG
* *
21699551 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCAGGGGGTGTGCACACATGATGTGC
129 AACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCGGGGGGTGTGCACACATGATGTGC
* * *
21699616 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGATCTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACA
* *
21699681 CCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-CTGAAATA
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
21699745 GGGACACTTTTTTCAAATTGGTAACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGACACTTTTTTCAAA-TGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
21699810 TGCATGCCAACAAAAATACAAGGATTATGCCTACCAAGTTTAGGGCCAAAATCCTTCTGAAAAAA
388 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAA
* * *
21699875 TTTTAAAAAATCCCGAACCACAAAAAGTTTCAAAAATCAG-GAAAAATAGAAAACGGGTTGTCTT
453 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCGTCTT
*
21699939 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATGAAAATGGCA
517 GCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCA
*
21700004 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCAATCGATCCAAGGCTTGCG
581 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCG
* * *
21700069 CATCTCATCTCTCTGGCCGGCATAGTGCCCGCCCACTCGCCCGCCCGCTCGTTTCATTC-GTTGG
646 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-C-CGCCCGCCCGCTCGTTTCATTCGGTTGG
21700133 CTTAG
709 CTTAG
* *
21700138 GCATACGGAGTTCATTCCTAATATAAGATCAGACCAGACCAAGGGTTGCAGCAGGACATGCTGGG
1 GCATACGGAGTTCATTCCCAATATAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTGGG
** *
21700203 CTCGGGCATGTGCTGGTGTTGCATTTTTCTTCGCCGAGGCACCATCGTCAGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCG-CGGAGA
* * *
21700268 ACCTGACCGACGGCATTGGGGTTCCGATGAACGGGGGGTCGGGGGGGTGTGCGCACATGATGTGC
130 ACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGC-GGGGGGTGTGCACACATGATGTGC
* * *
21700333 GATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATACCTCATTAAACCTCGAGAACTCAAA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACA
* *
21700398 CCCCCTTAAAGTGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAACGTGTCT-AAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
21700462 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAGCTGAATATTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* **
21700527 GCATGCCAACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTCCG-AAAAA
389 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCC-AAAATCCTTCCGAAAAAA
* * *
21700591 TGTTTAAAAAATCCCGAACCGTAAAAAGGTT-AGAAAATCGTGAAAAATAGAAAATGAGTCGTCT
453 T-TTTAAAAAATCCCGAACCGCAAAAAGTTTCA-AAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
21700655 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATTGGC
516 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA-TGGC
* *
21700720 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGC
* * *
21700785 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCGCTCATTTCA-TCGGTTG
645 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CC-CCCGCCCGCCCGCTCGTTTCATTCGGTTG
21700849 GCTTAG
708 GCTTAG
* *
21700855 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCTAAAAGTGGACCGGAT
1 GCATACGGAGTTCATTCCCAATATAAG-AT-C--AG---A----C---C----A---GACC--A-
* * * * * * *
21700920 CAGGGGTT-AAGGCAGCACATGCTGGGTTCTGGCATGTCCTGGTGCCGTATTTTTCATCGTCGAG
42 -A-GGGTTGCA-GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAG
* * * * *
21700984 GCACCATCTTTGGAGCATCACCGGAGAACCTGACCGACGGTATTGGGGTTCCGGTGATCGGGGGG
104 GCACCATCGTCGGAGCATC-GCGGAGAACCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGG
*
21701049 GCCGGGGGATGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
168 G-CGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * * *
21701114 TTCCTCAGCAAACCTTGAGAACTCGCACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
232 TACCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
21701179 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
297 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* *
21701244 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAACTTCAA-GATCATGTCTACCAAGT
362 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGT
* * * * *
21701308 TTGGGGCCAAAACTCCTTCCGAAAAAATTGTAAAAATTCTCGAACCGCAAAGAGTTTCGAAAATC
427 TTGGGGCCAAAA-TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
* *
21701373 GTGAAAAATATAAAACAAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
491 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCATTGTA
* * * *
21701438 TGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGATGATGTGCCTAAAGCCACCA
556 TGAATTTACAAGCCAT-AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
21701503 ACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCTG--CCCGCC
620 ACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCC
21701566 CGCCCGCTCGATTT--TTCGGTTGGCTTAG
685 CGCCCGCTCG-TTTCATTCGGTTGGCTTAG
* *
21701594 GCATACGGAGTTCATTCCCACTCTAAGATCAGACC
1 GCATACGGAGTTCATTCCCAATATAAGATCAGACC
21701629 GAACTGAGGG
Statistics
Matches: 1324, Mismatches: 119, Indels: 87
0.87 0.08 0.06
Matches are distributed among these distances:
716 247 0.19
717 419 0.32
718 7 0.01
719 2 0.00
721 2 0.00
724 1 0.00
725 1 0.00
728 2 0.00
731 1 0.00
732 1 0.00
735 3 0.00
737 1 0.00
738 6 0.00
739 53 0.04
740 4 0.00
742 6 0.00
743 472 0.36
744 96 0.07
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (713 bp):
GCATACGGAGTTCATTCCCAATATAAGATCAGACCAGACCAAGGGTTGCAGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGAGGCACCATCGTCGGAGCATCGCGGAGAA
CCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCGGGGGGTGTGCACACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATACCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAATCCTTCCGAAAAAATTT
TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCC
CGTCTCTCTGGCCGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCATTCGGTTGGCTTAG
Found at i:21700885 original size:26 final size:26
Alignment explanation
Indices: 21700855--21700906 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
21700845 GTTGGCTTAG
*
21700855 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21700881 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21700907 AAGTGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21701804 original size:26 final size:26
Alignment explanation
Indices: 21701753--21701805 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21701743 GTTGACTTAG
* *
21701753 GCATACGGAGTTCATCCCCAGGCTAA
1 GCATACAGAGTTCATCCCCAAGCTAA
* *
21701779 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATCCCCAAGCTAA
21701805 G
1 G
21701806 GTGGAACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.28, G:0.19, T:0.23
Consensus pattern (26 bp):
GCATACAGAGTTCATCCCCAAGCTAA
Found at i:21702684 original size:26 final size:26
Alignment explanation
Indices: 21702655--21702707 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21702645 GTTGGCTTAG
21702655 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21702681 GCATGCGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21702707 G
1 G
21702708 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21703571 original size:26 final size:26
Alignment explanation
Indices: 21703541--21703593 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21703531 GTTGACTTAG
*
21703541 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21703567 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21703593 G
1 G
21703594 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21704483 original size:26 final size:25
Alignment explanation
Indices: 21704445--21704496 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
21704435 GTTGACTTAG
*
21704445 GCATACGAGTTCATTCCTAATCTAA
1 GCATACGAGTTCATTCCCAATCTAA
21704470 GCATACGGAGTTCATTCCCAATCTAA
1 GCATAC-GAGTTCATTCCCAATCTAA
21704496 G
1 G
21704497 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAATCTAA
Found at i:21704841 original size:901 final size:900
Alignment explanation
Indices: 21700823--21706071 Score: 6514
Period size: 898 Copynumber: 5.9 Consensus size: 900
21700813 CCCGCCCGCC
* * * * *
21700823 CGCCCGCTCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * ** * *
21700888 AAGTTCATTCCCAGTCTAAAAGT-GGACCGGATC-AGGGGTTAAGGCAGCACATGCTGGGTTCTG
66 GAGTTCATTCCCAATCTAAGA-TCGGACCGGACCGA-GGGTTGCGGCAGCACATGCTGGGCTCAG
* * * * ***
21700951 GCATGTCCTGGTGCCGTATTTTTCATCGTCGAGGCACCATCTTTGGAGCATCACCGGAGAACCTG
129 GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTG
* * * * *
21701016 ACCGACGGTATTGGGGTTCCGGTGATCGGGGGGGCC-GGGGGATGTGCACACATGATGTGCGATG
194 ACCGACGGCATTGGGGTTTC-GCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATG
* * * *
21701080 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCAGCAAACCTTGAGAACTCGCACCCC
257 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
21701145 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
322 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
21701210 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
387 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
21701275 GCCAACAAAACTTCAA-GATCA-TGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTG
452 GCCAACAAAAATACAAGGATCACT-TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
21701338 TAAAAATTCTCGAACCGCAAAGAGTTTCGAAAATCGTGAAAAATATAAAACAAGTCGTCTTGCCA
516 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
21701403 TGAAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGG
581 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * * *
21701468 CATGCAGAAATATGATGATGTGCCTAAAGCCACCAACCACCCTATCGATCCATGGCTTGCGCATC
646 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
* * *
21701533 CCGTCTCTCTGGCTGGCGTAGTG-CCT--GCCCGCCCGCCCGCTCGATTT-TTCGGTTGGCTTAG
711 CCGTCTCTCTGGCAGACGTAGTGCCCTCCGCCCGCCCGCCCGCTC-ATTTCGTCGGTTGGCTTAG
* *
21701594 GCATACGGAGTTCATTCCCACTCTAAGATCAGACC-GAACTGAGGGTTACGT-G-AGCAAGATTG
775 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAG-ACTGAGGGTT--GTGGCAGCAGGATTG
* * * * * *
21701656 GCATCACA-CAGAGGGGGACTCGACCGATCCCCGGCTTGCGCATCCCCTCCCTCTTGCCGGCTGA
837 ACAGCA-AGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCC-CCCTCTGGCCGGCTGA
21701720 G
900 G
* * * *
21701721 CGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATCCCCAGGCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *
21701786 GAGTTCATTCCCAATCTAAGGT-GGAACCGGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGG
66 GAGTTCATTCCCAATCTAAGATCGG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGG
* * **
21701850 CATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCACCGGAGTATCGTCGGAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGA
*
21701915 CCGACGGCATTGGGGTTCTAGCGAT-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
195 CCGACGGCATTGGGGTT-TCGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
21701979 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCAAGAACTCACACCCCCT
259 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * * *
21702044 TAAAGAGCGTTTGAGATTTTATAGGTTTGCTACCTGTAGCCATTAAAGTGTCTTAAATGGGGACA
324 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
21702109 CGTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTT-TGCATG
389 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTGCATG
* * * * *
21702173 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTAGGGCTAAAACTCCTTCCGAAAGAATTTGA
453 CCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * **
21702238 AAAAATCCCAAAGCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
518 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
21702303 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTA
583 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
21702368 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
648 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
* * ** * *
21702433 GTCTCTCTGGTC-GACGTAGTGCCCGCCCGCCTGCCCGCTTGCTCGTTTCGTCAGTTGGCTTAGG
713 GTCTCTCTGG-CAGACGTAGTGCCC-TCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
* * * * *
21702497 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGACTTAGGGTTGCGGTAGCAGGATTGGCAG
776 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGACAG
* * * * * * *
21702562 CACGCAGAGGGGGACCCGACCGATCCCCGACTTGCGCATTTCACCCCTCTGGCCTGCTGAG
841 CAAGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCA-TCCCCCCCTCTGGCCGGCTGAG
* * * * * *
21702623 CGCCCGCATGGTCATTTCGTGAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGCG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * *** * * * *
21702688 GAGTTCATTCCCAGTCTAAGATCAGACCGGTTTGAGGATTACGACAGCACATGCTGGGCTCGGGC
66 GAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
* ** *
21702753 ATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGCCGGAG-A--ACC-G-G-ACC-G--
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGAC
* * ** *
21702809 -G-CGGCATTGGGGTTCCGACGATCGGGGGGGCTAGGGGGTGTGCACACATGATGTGCGATGGGT
196 CGACGGCATTGGGGTTTCG-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * * *
21702872 GCTGCTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCACGAGAACTCACACTCCCTT
260 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
21702937 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
325 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* *
21703002 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCAAGCC
390 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
21703067 AA-AAAAATACAGGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCGAAAAAATTTTAAA
455 AACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
21703131 AAATCTCGAACCGTAAAAA-TTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAA
520 AAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
*
21703195 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
585 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * * * * *
21703260 TAGGAATATGAAGATGTACTTAAACCCACCTACCACCCTATCGATCCATGGCTTGTGCATCCCGT
650 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGT
* * * * * *
21703325 CTATCTGACAGGCGTAGTG--C-CCGCCTGCCCGCTCGCTCATTCCGTCGGTTGGCTTAGGCATA
715 CTCTCTGGCAGACGTAGTGCCCTCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATA
* * *
21703387 CGGAGTTCATTCCCAGTCTAAGATCAGA-CAGGACCGAGGGTTGTGGCAGTAGGATTGACAGCAT
780 CGGAGTTCATTCCCAGTCTAAGATCAGACCA-GACTGAGGGTTGTGGCAGCAGGATTGACAGCAA
* * * * * * *
21703451 GTATAGGGGGTCCCAATTGATCCCTGGCTTGCGCTTCCCGCCCCTCTGGCAGGCTGAG
844 GCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCC-CCCCTCTGGCCGGCTGAG
* *
21703509 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * *
21703574 GAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGGCAGCACATGCTAGGCT-AGGG
66 GAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCA-GG
* * *
21703638 CATGTGCTGGAGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGA
130 CATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGA
* * *
21703703 CCGGCGGCATTGGGGTTTTGACGATTGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGG
195 CCGACGGCATTGGGGTTTCG-CGATCGGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGG
* * * * * *
21703768 GTGCTGGTACGTGGCCTTTATATTGGCCCGCTATCTCTCCTCAAATCGT-GAGAACTCACACCCC
258 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CCTCGAGAACTCACACCCC
* * * *
21703832 CTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCAATTAAAGTGTCTGAAATGGGGG
322 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
21703897 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
387 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
*
21703962 GCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCTAAAA-TCCTTCCAAAAAAATTT
452 GCCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAAAAAATTT
* *
21704026 TAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
516 TAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
21704091 AGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGG
581 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
21704156 CACACAGAAATATGAAGATGGGCCTAAACCTACCTACCACCCTATCGATCCACGACTTGCGCATC
646 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATC
* *
21704221 CCGTCTCTCTGGCCGGCGTAGTGCCCGTCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
711 CCGTCTCTCTGGCAGACGTAGTGCCC-TCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAG
* * * * *
21704286 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAAACCGAGGGTTGTAGCAGCAGGATCGACA
775 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGACA
* * * *
21704351 GGAAGCAGAGGGGGATCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGACCGAG
840 GCAAGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCC-CCCCTCTGGCCGGCTGAG
* * *
21704413 CGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCTAATCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
* * * * **
21704477 GAGTTCATTCCCAATCTAAGATCGGATCAGACCAAGGGTTGCGGCAGCACATACTACGCTCAGGC
66 GAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
*
21704542 ATGTGCTGGTGCCGCATTTTT-TTCGTCGGGGCACGATCACCGGAGCATCACCGGAGAACCTGAC
131 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGAC
** * *
21704606 CGGTGGCATTGGGGTTTCGTTGAT-GGGGGGCCGGGGGCGGTGTGCGCACATGATGTGCGATAGG
196 CGACGGCATTGGGGTTTCG-CGATCGGGGGGCCGGGGG-GGTGTGCGCACATGATGTGCGATGGG
**
21704670 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGGAACCTCGAGAACTCACACCCCCT
259 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
21704735 TAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCT-AATATGTGGAC
324 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA-ATGGGGAC
* *
21704799 ACTTTTTTCAAATGGTAACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGTGCATG
388 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
21704864 CCAAAAAAAATACAAGGATCACATCTACCAAGTTTAGGGCCAAAACTCCTTCTGAAAAAATTTAA
453 CCAACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* * * *
21704929 AAAAATCTCGGACCGCAAAAAGTTTCAAAAATCATGTAAAATAGAAAACGAGTCGTCTTGCCATT
518 AAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
21704994 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTTCAAGCCATAAAAATGCCATTGGCA
583 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
21705059 CGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCTATCCACGACTTGCGCATCCC
648 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCC
* * * ** *
21705124 ATCTCTCTGGCAGACGTAGTGCCCACCCGCCCGCCCGCCCACTCATTTTTTCGGTTGCCTTAGGC
713 GTCTCTCTGGCAGACGTAGTGCCC-TCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGC
* * * * * *
21705189 ATACGGTGTTCATTCCTAGTCTAAGATC-GAACCGGACTGAGGG-TGTGGTAGTAGGATCGACAG
777 ATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGTGGCAGCAGGATTGACAG
* * *
21705252 TAAGCACGAAGAAGTGGGACCCGATCGAT-CCTCGCTTGCGC-TCCGCCCCTTCTGGCCCGGCTG
841 CAAGCA-G-AG--G-GGGACCCGATCGATCCCTGGCTTGCGCATCC-CCCCCTCTGG-CCGGCTG
21705315 AG
899 AG
* * * *
21705317 CAACACCGCACGCTCATGTTCGTGAGTTGAC-TAGGCAT-TGGAG-T--TT--CA-TCT---C--
1 C-GC-CCGCACGCTCGT-TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCAT
* * *
21705369 -C-CAG--C--T----A--T-AGATCGGACTCGGACTGAGGGTTG-GGTAGCATCAATGCTGGGC
63 ACGGAGTTCATTCCCAATCTAAGATCGGAC-CGGACCGAGGGTTGCGGCAGCA-C-ATGCTGGGC
* * * ** ** *
21705420 TCA-GCATGTGGTGGTGCCACATTTTTCTTCGCCAAGGCACCATCGTCGAAGCA-CACCCGGAGA
125 TCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCA-CCGGAGA
* * * * * *
21705483 ACCTGACCGACGGCATTGAGGTTACGAGATGCGAGGGGGTCGGGAGGGTGTCCGCGACATGAT-T
189 ACCTGACCGACGGCATTGGGGTTTCGCGAT-CG-GGGGGCCGGGGGGGTGTGCGC-ACATGATGT
*
21705547 ATCGATGGGTGCT-GTACTTGGCCCTTATATTGGCCCCCTATCCCTGC--CATAA---C--GAA-
251 -GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT-CATCA-AACCTCGAGAAC
*
21705603 --ACA-TCCCTTAAAGAGCATCTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATCTAAAGGTGT
313 TCACACCCCCTTAAAGAGCAT-TTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT-TAAA-GTGT
* *
21705665 CTGAAAAT-GGGACACTTTTTTCAAATCGTCACAAAAATCTTGTACACTTCGAG-TTGTAGCTGA
375 CTG-AAATGGGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGA
*
21705728 ATTTTTTTGCGCATGCCAACAAAAATACAAGGATCA-TGTCTACCAAGTTTGGGGCCAAAACTCC
438 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACT-TCTACCAAGTTTGGGGCCAAAACTCC
* * * *
21705792 ATCC-AAAATAATTTTCACAAATC-CTGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
502 TTCCGAAAA-AATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAA
* * * * * *
21705855 ATGAGTTGTCTCGCCATTAAACTTCACGTGAAGGCTTAAGGGACGATTGTATAAATTTACAAGCC
565 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * *
21705920 ATAAAAATGGCATTGGCACGTAGAAATATGAATATGTGCCTAAACCCACCTGCCACTCTATCGAT
630 ATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *** * *
21705985 CCAC-AGCTTGCGCATCCCATCTCTCTAGCTGACGCAGTG--C-CCAATCGCCCACCCGCTCGTT
695 CCACGA-CTTGCGCATCCCGTCTCTCTGGCAGACGTAGTGCCCTCCGCCCGCCCGCCCGCTCATT
21706046 TCGTCGGTTGGCTTAGGCATACGGAG
759 TCGTCGGTTGGCTTAGGCATACGGAG
21706072 CATCGCCGGA
Statistics
Matches: 3830, Mismatches: 435, Indels: 195
0.86 0.10 0.04
Matches are distributed among these distances:
875 37 0.01
876 14 0.00
877 36 0.01
878 10 0.00
879 293 0.08
880 24 0.01
881 2 0.00
882 15 0.00
883 39 0.01
884 57 0.01
885 48 0.01
886 314 0.08
887 1 0.00
888 1 0.00
889 5 0.00
890 180 0.05
891 96 0.03
892 217 0.06
893 3 0.00
894 1 0.00
895 1 0.00
896 12 0.00
897 247 0.06
898 634 0.17
899 76 0.02
900 218 0.06
901 541 0.14
902 342 0.09
903 119 0.03
904 198 0.05
905 17 0.00
906 20 0.01
907 12 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACG
GAGTTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCACCGGAGAACCTGAC
CGACGGCATTGGGGTTTCGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACTTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCGTC
TCTCTGGCAGACGTAGTGCCCTCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATTGACAGCAAGC
AGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCCCCCTCTGGCCGGCTGAG
Found at i:21706864 original size:26 final size:26
Alignment explanation
Indices: 21706829--21706881 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21706819 GTTGACATAG
*
21706829 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTATAA
*
21706855 GCATATGGAGTTCATTCCCAGTATAA
1 GCATACGGAGTTCATTCCCAGTATAA
21706881 G
1 G
21706882 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTATAA
Found at i:21707747 original size:26 final size:26
Alignment explanation
Indices: 21707711--21707763 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21707701 GTTGACTTAG
* *
21707711 GCATACGGAGTTCATTCCGAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21707737 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21707763 G
1 G
21707764 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21708639 original size:26 final size:26
Alignment explanation
Indices: 21708603--21708655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21708593 GTTGACTTAG
21708603 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21708629 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21708655 G
1 G
21708656 TCAAACCGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21709551 original size:26 final size:26
Alignment explanation
Indices: 21709499--21709551 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21709489 CTTGACTTAG
*
21709499 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATATGGAGTTCATTCCCAATCTAA
*
21709525 GCATATGGAGTTCATTCCCAATTTAA
1 GCATATGGAGTTCATTCCCAATCTAA
21709551 G
1 G
21709552 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATATGGAGTTCATTCCCAATCTAA
Found at i:21710748 original size:891 final size:888
Alignment explanation
Indices: 21706072--21711220 Score: 6938
Period size: 892 Copynumber: 5.8 Consensus size: 888
21706062 GCATACGGAG
* * * *
21706072 CATCGCCGGAGATCCTGACCGGCGACATTGGGGTTCCGGCGATCGGGGG-GACTGAGGGGGGTGT
1 CATCGCCGGAGAACCTGACCGGCGGCA-TAGGGTTCCGGCGATCGGGGGTG-C--CGGGGGGTGT
* * *
21706136 GCGCACATGATGTGCGATGGGTACTGGTACTTGGCCATTATATTGGTCCCCTATCCCTCATCAAA
62 GCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAA
** *
21706201 AATCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATT
127 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
21706266 AAAGTTTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTCTGAGTTTTTA
192 AAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTA
*
21706331 GCTGAATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
257 GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAA
* * * ** *
21706396 ATACTTTCGAAAAAATTTTGAAAAATCTTAAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGA
322 CTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGA
21706461 AAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
387 AAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG
*
21706526 GCATAAAAATGGCATTGGCACT-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
452 CCATAAAAATGGCATTGGCA-TGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* **
21706590 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGCAGTG-CCCAAT-CGCCCGCCCGCTCGT
516 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGTCCGCCCGCCCGCTCGT
* ** *
21706653 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACC-GTACTGAGGGTT
581 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAG-ACTAAGGGTT
* ** *
21706717 GCGGTAGCAGGATCGACAGCACGTAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCTCCC
645 GCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT-CCGCCC
* * * * ** ** *
21706782 CTCTGGCCGACTGAGCGCCCGTAAGCTTGTTTCATTTGTTGACATAGGCATACGGAGTTCATTCC
709 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
21706847 CAGTCTAAGCATATGGAGTTCATTCCCAGTATAAGATTGGACCGGATCGAGGGTTACGACAGCAC
774 CAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAC
* * *
21706912 ATACTGGGCTCAGGCATGTGCTGGTGCAGCATTTTTCTTCGTC--GGCAC
839 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * * *
21706960 CATCACCGGAGAACCTGACCGGTGGCATTGGCGTTCC-G-G-T----GAT-CAGGGGGGTGTGCG
1 CATCGCCGGAGAACCTGACCGGCGGCATAGG-GTTCCGGCGATCGGGGGTGCCGGGGGGTGTGCG
* * * *
21707017 CACATGATGTGTGCTGGGTGCTGGTACTTGGCCCATATATTGGCCCCATATCCCTCATCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * * * *
21707082 TGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTACTACCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
21707147 GTGTTTGAAATGGGGACACCTTTTTCAAATGGTCACAAAAACTTGTACACTTTGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
* * * *
21707212 GAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCCCATCTACCAAGTTTGGGACCGAAAA-T
260 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACT
* * * * *
21707276 CCTTTCAAAAAAATTTTAAAAAATCTTGAACCGCAAAAGGTTTTAAAAATCGTGAAAAATAGAAA
324 CCTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * *
21707341 ACGAGTCATCTTACCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTTTGAATTTACAAGCC
389 ACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
*
21707406 ATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
454 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* *
21707471 CCACGGCTTGTGCATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGTCCGTTCGCCCGCCCGCTCGT
519 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CGTAGTGCCC--CCGTCCGCCCGCCCGCTCGT
* * * * *
21707535 TTCGTCGGTTGGCTTAGGCATACGGAGTTCAGTCCTAGTCTAAGATCGCACCGGACCAAGGGTTG
581 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAGACTAAGGGTTG
* * * * * * * *
21707600 TGGTAGCAAGATCGACAGCATGTAGAGGGGGA-CCGGACTGATCCCCAGCTTACGCATCCCGCTC
646 CGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGG-CCGATCCCCGGCTTGCGCAT-CCGCCC
*
21707664 CTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
709 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCC
* * * *
21707729 GAGTGTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAACAC
774 CAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCAC
* * *
21707794 ATGCTGGGCTCAGGCAAGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCAC
839 ATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * *
21707844 CATCGTCAGAGAACCTGACCCGCGGCACTCGGGTTCCGGCGATCGGGGGTGCCGGGGGGTGTGCG
1 CATCGCCGGAGAACCTGACCGGCGGCA-TAGGGTTCCGGCGATCGGGGGTGCCGGGGGGTGTGCG
*
21707909 CACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* *
21707974 CGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACATGTTTGCTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
**
21708039 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTGCGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
* * * *
21708104 GAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCAACCAAGTTTGGGGCCAAAAATC
260 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* *
21708169 C-TTCAGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGGAAAATAGAAA
325 CTTTC-GAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* * *
21708233 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGTATGAATTTAGAAGCC
389 ACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* ** *
21708298 ATAAAAATGGCATTGGAACATAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGAT
454 ATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * *
21708363 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGAAGTGCCCGCCCGCCCGTCCGCCC-CTTCGT
519 CCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CC-CCCGTCCGCCCGCCCGC-TCGT
* * * * * * *
21708427 TTCGTCGGTTGGCTTGGGCATACAGAGTTCATTCCCATTCTAAGATCAGACCAAATTGAGGGTTG
581 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAGACTAAGGGTTG
* * ** * * *
21708492 TGGCAGCAGGATCGGCAGCACACAGAGGGGAACCCAGCTGATCCCCGGCTTGCGCATCCTGCCCC
646 CGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCC-GCCCC
* * * * * *
21708557 TTTGGCCGGTTGAGTGCCCACACGTTCGTTTTGTGTGTTGACTTAGGCATACGGAGTTCATTCCC
710 TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCC
* * ** * *
21708622 AGTCTAAGCATACGGAGTTCATTCTCAGTCTAAG-TCAAACCGGACCGAGGGTTGCGGTAGCACA
775 AGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACA
* *
21708686 TGCTGGGCTCGGGCATGTGCTGGTGACGCATTTCTCTTCGTCGGGGCAC
840 TGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* ** * *
21708735 CATCGTCGGAGCATCACCGGAGAACCTGACCGACGGCATAGGGGTTCCGATGATTGGGGG-G-CA
1 CA---TC---G-----CCGGAGAACCTGACCGGCGGCATA-GGGTTCCGGCGATCGGGGGTGCCG
*
21708798 GGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
54 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
* *
21708863 TCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTTCCAG
119 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * * *
21708928 TAGCCATTAAAGTTTCTGAAATGGGGACACTTTTTTCAAGTGGCCACAAAATCTTGTACACTTCG
184 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTG
* * *
21708993 AGTTTTTAGCTGCATTTTTTTGTCCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
249 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
21709058 GGCCAAAACTAC-TTCCAATAAAGTTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCATG
314 GGCCAAAACTCCTTTCGAA-AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATG
* * *
21709122 AAAAATAGAAAATGAGTCATCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACAATTGTATGA
378 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGA
** *
21709187 ATTTACAAGCTGTAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
443 ATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
21709252 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTG--CCCGTCCGCCCGC
508 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGTCCGCCCGC
* * * * **
21709315 CCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTTAGATCAAACTGGACT
573 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAGACT
* * * * * *
21709380 GAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCTTGCGCAT
638 AAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCAT
* * * * ** * *
21709445 CCTGCCGCTCTGGCCGACT-ACGCACCCGCACGCTTGTTTCATGGCTTGACTTAGGCATATGGAG
703 CC-GCCCCTCTGGCCGGCTGA-GCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
* * *
21709509 TTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAATTTAAGATCAGACCGGATCGAGGGTTGC
766 TTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGC
* * * *
21709574 AGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGAGGCAC
831 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * * * * *
21709632 CATCGCCGGAGCATCGCCGTAGAACCTGACCGG--T-GGCATT--GGCGTTTCGGTGAT--CGGG
1 CATCGCCGGAG-A--ACC-T-G-ACC-G-GCGGCATAGG-GTTCCGGCG-ATCGGGGGTGCCGGG
*
21709690 GGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
56 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTC
* * * *
21709755 GTCAAACCTTGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTA
121 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
*
21709820 GCCACTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
186 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG
* * *
21709885 TTTTTAGCTGAATTTTTTTTGTGCATGCCAACAAAAATACAAGGATCCCATCTACCAAGTTTGGG
251 TTTTTAGCTGAA-TTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * ** *
21709950 GCCAAAACTCCTTTCG-AAAAATTTTGAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTG-
315 GCCAAAACTCCTTTCGAAAAAATTTT-AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGA
* *
21710013 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAA
379 AAAATAGAAAACGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAA
* *
21710078 TTTACAAGCCATAAAAATGGCATT-GCATGTAGAATTATGAAGATGTGCCAAAACCCACCTACCA
444 TTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* ** * * **
21710142 GCCTATCGATCCATAGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCACCTGTTTGCCCG
509 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CC-GTCCGCCCG
* * ** *
21710207 CCCGCTCATTTGGTCGGTTGGCTTCTGCATACGGAGTTCATTCCCAGTATAAGATCACACCAGAC
572 CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAGAC
* * * * *
21710272 CAAGGGTTGCAGTAGTAGGATCGGCAGCACGTAGAGGGGGAGCCGGCCGATCCCCGGCTTACGCA
637 TAAGGGTTGCGGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCA
*
21710337 TCTCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCACACGGAG
702 TC-CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAG
* * *
21710402 TTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTAC
766 TTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGC
*
21710467 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCAC
831 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* *
21710525 CATCGCTGGAGAACCTGACTGGCGGCACTAGGGTTCCGGCGATCGGGGGTGCCGGGGGGTGTGCG
1 CATCGCCGGAGAACCTGACCGGCGGCA-TAGGGTTCCGGCGATCGGGGGTGCCGGGGGGTGTGCG
* *
21710590 CACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCT
65 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
21710655 CGAGAACTCACACCCCCTTAGAGAGCATTTCAGATTTTACAGGTTTACTGCCAGTAGCCATTAAA
130 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
**
21710720 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACCGTGAGTTTTTAGCT
195 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCT
* * *
21710785 GAATTTTTTTGTGCATGCCAATAAAAATACAAGGATCATGTCAACCAAGTTTGGGGCCAAAACTC
260 GAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* * * *
21710850 CTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATTATGGAAAATAGAAAA
325 CTTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
* * *
21710915 CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTAGAAGCCA
390 CGAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
* *
21710980 TAAAAATGGCATTGGCATGTAGAAATATGATGATGTGCCTAAACGCACCTACCACCCTATCGATC
455 TAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
* * * *
21711045 CACAGCTTGCGTATCCCGTCTCTCTGGCCGACGTAGTGCCCGCTCGCCCGTCCGCCCGCTCGTTT
520 CACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-C-CGTCCGCCCGCCCGCTCGTTT
* * *
21711110 GGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTTTAAGATCGA-ATCAGACTAAGGGTTGC
583 CGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-ACACCAGACTAAGGGTTGC
** * * * *
21711174 GACAGCAGCATCGGCTA-CACGCAGTGGGGGACCCGACCGATCCCCGG
647 GGTAGCAGGATCGGC-AGCACGTAGAGGGGGACCCGGCCGATCCCCGG
21711221 TGTCATGAGC
Statistics
Matches: 3753, Mismatches: 428, Indels: 156
0.87 0.10 0.04
Matches are distributed among these distances:
877 2 0.00
878 459 0.12
879 6 0.00
880 1 0.00
881 6 0.00
882 275 0.07
883 1 0.00
884 32 0.01
885 8 0.00
886 9 0.00
887 8 0.00
888 32 0.01
889 93 0.02
890 393 0.10
891 471 0.13
892 857 0.23
893 302 0.08
894 10 0.00
895 1 0.00
896 209 0.06
897 74 0.02
899 2 0.00
900 466 0.12
901 2 0.00
902 34 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (888 bp):
CATCGCCGGAGAACCTGACCGGCGGCATAGGGTTCCGGCGATCGGGGGTGCCGGGGGGTGTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC
TTTCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC
GAGTCGTCTTGCCATGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT
AAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC
ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCGTCCGCCCGCCCGCTCGTTTCGT
CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCACACCAGACTAAGGGTTGCGGTA
GCAGGATCGGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCGCCCCTCTGGC
CGGCTGAGCGCCCGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
AGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGG
GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
Found at i:21712891 original size:86 final size:82
Alignment explanation
Indices: 21712741--21713135 Score: 481
Period size: 86 Copynumber: 4.7 Consensus size: 82
21712731 AAGTTGGTGC
21712741 CTGTTTAGAGGCAGCAATTTACTTTCTCAAAAGTCATGGTGCCTTCTGTTTAGAGGAGCAATTTA
1 CTGTTTAGAGG-AGCAATTTAC-TT-TCAAAAGTCATGGTGCC-TCTGTTTAGAGGAGCAATTTA
21712806 CTTTTCCAAAGTCGTGGTGCCT
62 C-TTTCCAAAGTCGTGGTGCCT
*
21712828 CTGTTTCAGAGGAAGCCAATTTACTTTCAAAAGTCATGGTGGCTCTGTTTAGAGGAGCAATTTAC
1 CTGTTT-AGAGG-AG-CAATTTACTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTAC
* *
21712893 TTTCTCAAAATAGTGGTGCCT
63 TTTC-CAAAGTCGTGGTGCCT
* * *
21712914 CTGTTTAGAGGAGTAATTT--TTTCCACAAGTCGTGGTGCCCATCTGTTTAGGAGGAGGCAATTT
1 CTGTTTAGAGGAGCAATTTACTTT-CAAAAGTCATGGTG-CC-TCTGTTTA-GAGGA-GCAATTT
* *
21712977 ATTTTTCAAAGTCGTGGTGCCCT
61 ACTTTCCAAAGTCGTGGTG-CCT
* *
21713000 CTGTTTAGAGGAGCAATTTATTTTC-AAAGTCTTGGTGCCTCTGTTTAGAGGAGCAATTTACTTT
1 CTGTTTAGAGGAGCAATTTACTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTT
* *
21713064 CAAAAGTCATGGTGCCT
66 CCAAAGTCGTGGTGCCT
* * * * *
21713081 CTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTTGAGCCTCTGTTTAGAGGAGC
1 CTGTTTAGAGGAGCAATTTACTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGC
21713136 TTTGGTCAAA
Statistics
Matches: 274, Mismatches: 22, Indels: 29
0.84 0.07 0.09
Matches are distributed among these distances:
81 31 0.11
82 60 0.22
83 11 0.04
84 18 0.07
85 27 0.10
86 84 0.31
87 23 0.08
88 12 0.04
89 8 0.03
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (82 bp):
CTGTTTAGAGGAGCAATTTACTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTT
CCAAAGTCGTGGTGCCT
Found at i:21713036 original size:41 final size:40
Alignment explanation
Indices: 21712741--21713135 Score: 468
Period size: 41 Copynumber: 9.3 Consensus size: 40
21712731 AAGTTGGTGC
*
21712741 CTGTTTAGAGGCAGCAATTTACTTTCTCAAAAGTCATGGTGCCTT
1 CTGTTTAGAGG-AGCAATTTA-TTT-TC-AAAGTCGTGGTGCC-T
21712786 CTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCT
1 CTGTTTAGAGGAGCAATTTA-TTTT-CAAAGTCGTGGTGCCT
* * *
21712828 CTGTTTCAGAGGAAGCCAATTTACTTTCAAAAGTCATGGTGGCT
1 CTGTTT-AGAGG-AG-CAATTTATTTTC-AAAGTCGTGGTGCCT
* *
21712872 CTGTTTAGAGGAGCAATTTACTTTCTCAAAATAGTGGTGCCT
1 CTGTTTAGAGGAGCAATTTA-TTT-TCAAAGTCGTGGTGCCT
* *
21712914 CTGTTTAGAGGAGTAATTT-TTTCCACAAGTCGTGGTGCCCAT
1 CTGTTTAGAGGAGCAATTTATTTTCA-AAGTCGTGGTG-CC-T
21712956 CTGTTTAGGAGGAGGCAATTTATTTTTCAAAGTCGTGGTGCCCT
1 CTGTTTA-GAGGA-GCAATTTA-TTTTCAAAGTCGTGGTG-CCT
*
21713000 CTGTTTAGAGGAGCAATTTATTTTCAAAGTCTTGGTGCCT
1 CTGTTTAGAGGAGCAATTTATTTTCAAAGTCGTGGTGCCT
* *
21713040 CTGTTTAGAGGAGCAATTTACTTTCAAAAGTCATGGTGCCT
1 CTGTTTAGAGGAGCAATTTATTTTC-AAAGTCGTGGTGCCT
* *
21713081 CTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTTGAGCCT
1 CTGTTTAGAGGAGCAATTTATTTT-CAAAGTCGTGGTGCCT
21713122 CTGTTTAGAGGAGC
1 CTGTTTAGAGGAGC
21713136 TTTGGTCAAA
Statistics
Matches: 312, Mismatches: 22, Indels: 36
0.84 0.06 0.10
Matches are distributed among these distances:
39 2 0.01
40 39 0.12
41 88 0.28
42 57 0.18
43 37 0.12
44 52 0.17
45 32 0.10
46 5 0.02
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.35
Consensus pattern (40 bp):
CTGTTTAGAGGAGCAATTTATTTTCAAAGTCGTGGTGCCT
Found at i:21713060 original size:168 final size:167
Alignment explanation
Indices: 21712741--21713134 Score: 516
Period size: 168 Copynumber: 2.3 Consensus size: 167
21712731 AAGTTGGTGC
*
21712741 CTGTTTAGAGGCAGCAATTTACTTTCTCAAAAGTCATGGTGCCTTCTGTTTAGAGGA-GCAATTT
1 CTGTTTAGAGG-AGCAATTT--TTTC-C-AAAGTCGTGGTGCC-TCTGTTTAGAGGAGGCAATTT
*
21712805 ACTTTTCCAAAGTCGTGGTGCCTCTGTTTCAGAGGAAGCCAATTTACTTTCAAAAGTCATGGTGG
60 ACTTTTCCAAAGTCGTGGTGCCTCTGTTTCAGAGGAAGCCAATTTACTTTCAAAAGTCATGGTGC
21712870 CTCTGTTTAGAGGAGCAATTTACTTTCTCAAAA-T-AGTGGTGCCT
125 CTCTGTTTAGAGGAGCAATTTAC-TT-TCAAAAGTCA-TGGTGCCT
*
21712914 CTGTTTAGAGGAGTAATTTTTTCCACAAGTCGTGGTGCCCATCTGTTTAGGAGGAGGCAATTTA-
1 CTGTTTAGAGGAGCAATTTTTTCCA-AAGTCGTGGTG-CC-TCTGTTTA-GAGGAGGCAATTTAC
* * *
21712978 TTTTTCAAAGTCGTGGTGCCCTCTGTTT-AGAGG-AG-CAATTTATTTTC-AAAGTCTTGGTGCC
62 TTTTCCAAAGTCGTGGTG-CCTCTGTTTCAGAGGAAGCCAATTTACTTTCAAAAGTCATGGTGCC
21713039 TCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCATGGTGCCT
126 TCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCATGGTGCCT
* *
21713081 CTGTTTAGAGGAGCAATTTATTTTCCAAAGTCGTTGAGCCTCTGTTTAGAGGAG
1 CTGTTTAGAGGAGCAA-TT-TTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
21713135 CTTTGGTCAA
Statistics
Matches: 202, Mismatches: 10, Indels: 26
0.85 0.04 0.11
Matches are distributed among these distances:
165 6 0.03
166 14 0.07
167 28 0.14
168 47 0.23
169 29 0.14
170 16 0.08
171 27 0.13
172 24 0.12
173 11 0.05
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (167 bp):
CTGTTTAGAGGAGCAATTTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGGCAATTTACTTTT
CCAAAGTCGTGGTGCCTCTGTTTCAGAGGAAGCCAATTTACTTTCAAAAGTCATGGTGCCTCTGT
TTAGAGGAGCAATTTACTTTCAAAAGTCATGGTGCCT
Found at i:21713162 original size:9 final size:10
Alignment explanation
Indices: 21713143--21713199 Score: 80
Period size: 10 Copynumber: 5.5 Consensus size: 10
21713133 AGCTTTGGTC
21713143 AAAAACAAAA
1 AAAAACAAAA
21713153 AAAAACAAAA
1 AAAAACAAAA
21713163 AAACAAC-AAA
1 AAA-AACAAAA
21713173 AAAAACACAAA
1 AAAAACA-AAA
21713184 AAAAACAAAA
1 AAAAACAAAA
21713194 CAAAAA
1 -AAAAA
21713200 ATGACAATGT
Statistics
Matches: 43, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
9 3 0.07
10 22 0.51
11 18 0.42
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (10 bp):
AAAAACAAAA
Found at i:21713163 original size:11 final size:11
Alignment explanation
Indices: 21713143--21713200 Score: 68
Period size: 11 Copynumber: 5.5 Consensus size: 11
21713133 AGCTTTGGTC
21713143 AAAAAC-AAAA
1 AAAAACAAAAA
21713153 AAAAACAAAAA
1 AAAAACAAAAA
*
21713164 AACAAC--AAA
1 AAAAACAAAAA
*
21713173 AAAAACACAAA
1 AAAAACAAAAA
21713184 AAAAACAAAACA
1 AAAAACAAAA-A
21713196 AAAAA
1 AAAAA
21713201 TGACAATGTT
Statistics
Matches: 41, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
9 8 0.20
10 6 0.15
11 21 0.51
12 6 0.15
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAACAAAAA
Found at i:21713175 original size:20 final size:20
Alignment explanation
Indices: 21713143--21713198 Score: 78
Period size: 21 Copynumber: 2.7 Consensus size: 20
21713133 AGCTTTGGTC
21713143 AAAAACAAAAAAAA-ACAAAA
1 AAAAACAAAAAAAACAC-AAA
21713163 AAACAACAAAAAAAACACAAA
1 AAA-AACAAAAAAAACACAAA
21713184 AAAAACAAAACAAAA
1 AAAAACAAAA-AAAA
21713199 AATGACAATG
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
20 10 0.30
21 21 0.64
22 2 0.06
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (20 bp):
AAAAACAAAAAAAACACAAA
Found at i:21713182 original size:14 final size:13
Alignment explanation
Indices: 21713159--21713200 Score: 52
Period size: 12 Copynumber: 3.3 Consensus size: 13
21713149 AAAAAAAAAC
21713159 AAAAAAACAAC-A
1 AAAAAAACAACAA
21713171 AAAAAAAC-ACAA
1 AAAAAAACAACAA
*
21713183 AAAAAACAAAACAA
1 AAAAAA-ACAACAA
21713197 AAAA
1 AAAA
21713201 TGACAATGTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
11 2 0.08
12 15 0.58
13 1 0.04
14 8 0.31
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (13 bp):
AAAAAAACAACAA
Found at i:21713206 original size:15 final size:14
Alignment explanation
Indices: 21713143--21713200 Score: 68
Period size: 14 Copynumber: 4.2 Consensus size: 14
21713133 AGCTTTGGTC
21713143 AAAAACAAAA-AAA
1 AAAAACAAAACAAA
21713156 AACAAA-AAAACAACA
1 AA-AAACAAAACAA-A
*
21713171 AAAAA-AACACAAA
1 AAAAACAAAACAAA
21713184 AAAAACAAAACAAA
1 AAAAACAAAACAAA
21713198 AAA
1 AAA
21713201 TGACAATGTT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
13 12 0.31
14 24 0.62
15 3 0.08
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (14 bp):
AAAAACAAAACAAA
Found at i:21713416 original size:16 final size:16
Alignment explanation
Indices: 21713397--21713506 Score: 51
Period size: 16 Copynumber: 7.1 Consensus size: 16
21713387 TTTTTTGTAT
21713397 TTTATGTATT-TTATTA
1 TTTAT-TATTATTATTA
21713413 TTTATTATTATTATTA
1 TTTATTATTATTATTA
*
21713429 TGTA-TATCT-TTATTTA
1 TTTATTAT-TATTA-TTA
* *
21713445 TTT-TT-TCTGTTAATA
1 TTTATTAT-TATTATTA
*
21713460 TTTA-TATGTAAT-TTA
1 TTTATTAT-TATTATTA
21713475 TTTA-TA-TAGTTATATA
1 TTTATTATTA-TTAT-TA
21713491 TTTATTATTA-TATTA
1 TTTATTATTATTATTA
21713506 T
1 T
21713507 AATTTTTTTC
Statistics
Matches: 74, Mismatches: 8, Indels: 25
0.69 0.07 0.23
Matches are distributed among these distances:
13 2 0.03
14 1 0.01
15 31 0.42
16 36 0.49
17 2 0.03
18 2 0.03
ACGTcount: A:0.29, C:0.02, G:0.05, T:0.65
Consensus pattern (16 bp):
TTTATTATTATTATTA
Found at i:21713429 original size:28 final size:27
Alignment explanation
Indices: 21713394--21713446 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 27
21713384 CCTTTTTTTG
*
21713394 TATTTTATGTAT-TTTATTATTTATTAT
1 TATTTTATGTATATCT-TTATTTATTAT
21713421 TATTATTATGTATATCTTTATTTATT
1 TATT-TTATGTATATCTTTATTTATT
21713447 TTTTCTGTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
27 4 0.17
28 17 0.74
29 2 0.09
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (27 bp):
TATTTTATGTATATCTTTATTTATTAT
Found at i:21713468 original size:65 final size:64
Alignment explanation
Indices: 21713394--21713528 Score: 152
Period size: 65 Copynumber: 2.1 Consensus size: 64
21713384 CCTTTTTTTG
* * * * *
21713394 TATTTTATGTATTTTA-TTATTTA-TTAT-TA-TTATTATGTATATCTTTATTTATTTTTTCTGT
1 TATTTTATGTAATTTATTTATATAGTTATATATTTATTAT-TATAT-TATA-AT-TTTTTTCTGG
21713455 TAA
62 TAA
21713458 TATTTATATGTAATTTATTTATATAGTTATATATTTATTATTATATTATAATTTTTTTCTGGTAA
1 TATTT-TATGTAATTTATTTATATAGTTATATATTTATTATTATATTATAATTTTTTTCTGGTAA
21713523 TATTTT
1 TATTTT
21713529 TGGATTTATT
Statistics
Matches: 61, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
64 6 0.10
65 27 0.44
66 7 0.11
67 7 0.11
68 7 0.11
69 7 0.11
ACGTcount: A:0.28, C:0.02, G:0.05, T:0.64
Consensus pattern (64 bp):
TATTTTATGTAATTTATTTATATAGTTATATATTTATTATTATATTATAATTTTTTTCTGGTAA
Found at i:21713502 original size:20 final size:18
Alignment explanation
Indices: 21713468--21713511 Score: 54
Period size: 19 Copynumber: 2.3 Consensus size: 18
21713458 TATTTATATG
21713468 TAATTTATTTATATAGTTA
1 TAATTTATTTATATA-TTA
21713487 TATATTTA-TTATTATATTA
1 TA-ATTTATTTA-TATATTA
21713506 TAATTT
1 TAATTT
21713512 TTTTCTGGTA
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 10 0.43
20 9 0.39
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.61
Consensus pattern (18 bp):
TAATTTATTTATATATTA
Found at i:21713503 original size:14 final size:16
Alignment explanation
Indices: 21713453--21713503 Score: 56
Period size: 15 Copynumber: 3.4 Consensus size: 16
21713443 TATTTTTTCT
21713453 GTTA-ATATTTATAT-
1 GTTATATATTTATATA
* *
21713467 GTAATTTATTTATATA
1 GTTATATATTTATATA
21713483 GTTATATATTTAT-TA
1 GTTATATATTTATATA
21713498 -TTATAT
1 GTTATAT
21713504 TATAATTTTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
14 9 0.29
15 11 0.35
16 11 0.35
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.59
Consensus pattern (16 bp):
GTTATATATTTATATA
Found at i:21713595 original size:26 final size:25
Alignment explanation
Indices: 21713541--21713600 Score: 61
Period size: 24 Copynumber: 2.4 Consensus size: 25
21713531 GATTTATTTT
21713541 ATTTTATTTTTTAATTATCTG-TTA
1 ATTTTATTTTTTAATTATCTGTTTA
*
21713565 ATTTTATTTTATTCATTTATCTGATTT-
1 ATTTTATTTT-TT-AATTATCTG-TTTA
*
21713592 TTTTTATTT
1 ATTTTATTT
21713601 ATCCGATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 10 0.33
25 2 0.07
26 8 0.27
27 8 0.27
28 2 0.07
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (25 bp):
ATTTTATTTTTTAATTATCTGTTTA
Found at i:21713616 original size:18 final size:18
Alignment explanation
Indices: 21713573--21713617 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
21713563 TAATTTTATT
* *
21713573 TTATTCATTTATCTGATTT
1 TTATT-ATTTATCCGATTA
*
21713592 TTTTTATTTATCCGATTA
1 TTATTATTTATCCGATTA
21713610 TTATTATT
1 TTATTATT
21713618 ATTATTTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.22, C:0.09, G:0.04, T:0.64
Consensus pattern (18 bp):
TTATTATTTATCCGATTA
Found at i:21714339 original size:17 final size:15
Alignment explanation
Indices: 21714309--21714342 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 15
21714299 TCTACCCCCT
21714309 CCAAGCCGAGCCGAG
1 CCAAGCCGAGCCGAG
21714324 CCAAGCCGGTAGCCGAG
1 CCAAGCC-G-AGCCGAG
21714341 CC
1 CC
21714343 GCTCCAGGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 7 0.41
16 1 0.06
17 9 0.53
ACGTcount: A:0.24, C:0.41, G:0.32, T:0.03
Consensus pattern (15 bp):
CCAAGCCGAGCCGAG
Found at i:21714381 original size:4 final size:4
Alignment explanation
Indices: 21714370--21714439 Score: 54
Period size: 4 Copynumber: 17.0 Consensus size: 4
21714360 TTTTTTCAAA
* * *
21714370 ATTT -TTT ATTT ATTT GTCTT ATTT ATTT ATTT ATTAG ATTAG ATTT ATTT
1 ATTT ATTT ATTT ATTT AT-TT ATTT ATTT ATTT ATT-T ATT-T ATTT ATTT
*
21714420 A-AT ATTT ATTT ATTTT ATTT
1 ATTT ATTT ATTT A-TTT ATTT
21714440 TTATTTTTGT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
3 5 0.09
4 35 0.64
5 15 0.27
ACGTcount: A:0.26, C:0.01, G:0.04, T:0.69
Consensus pattern (4 bp):
ATTT
Found at i:21714384 original size:11 final size:11
Alignment explanation
Indices: 21714370--21714471 Score: 57
Period size: 11 Copynumber: 8.8 Consensus size: 11
21714360 TTTTTTCAAA
21714370 ATTTTTTATTT
1 ATTTTTTATTT
21714381 ATTTGTCTTATTT
1 ATTT-T-TTATTT
*
21714394 ATTTATTTATTAG
1 ATTT-TTTATT-T
*
21714407 ATTAGATTTATTT
1 ATT--TTTTATTT
* *
21714420 AATATTTATTT
1 ATTTTTTATTT
21714431 ATTTTATT-TTT
1 ATTTT-TTATTT
21714442 ATTTTTGT-TTT
1 ATTTTT-TATTT
* *
21714453 A-CTTTTCTTT
1 ATTTTTTATTT
21714463 ATTTTTTAT
1 ATTTTTTAT
21714472 CTTTATTTAT
Statistics
Matches: 72, Mismatches: 10, Indels: 18
0.72 0.10 0.18
Matches are distributed among these distances:
9 1 0.01
10 8 0.11
11 33 0.46
12 8 0.11
13 16 0.22
14 6 0.08
ACGTcount: A:0.22, C:0.03, G:0.04, T:0.72
Consensus pattern (11 bp):
ATTTTTTATTT
Found at i:21714438 original size:5 final size:5
Alignment explanation
Indices: 21714413--21714506 Score: 57
Period size: 5 Copynumber: 17.6 Consensus size: 5
21714403 TTAGATTAGA
* * *
21714413 TTTAT TTAAT ATTTA- TTTAT TTTATT TTTATT TTTGT TTTACT TTTCT
1 TTTAT TTTAT -TTTAT TTTAT TTTA-T TTTA-T TTTAT TTTA-T TTTAT
* *
21714461 TTATTT TTTAT CTTTA- TTTAT TTTCACT TTTAT TTTAT TCTAT TTT
1 TT-TAT TTTAT -TTTAT TTTAT TTT-A-T TTTAT TTTAT TTTAT TTT
21714507 CTTTAAATAA
Statistics
Matches: 71, Mismatches: 9, Indels: 18
0.72 0.09 0.18
Matches are distributed among these distances:
4 8 0.11
5 32 0.45
6 27 0.38
7 4 0.06
ACGTcount: A:0.18, C:0.06, G:0.01, T:0.74
Consensus pattern (5 bp):
TTTAT
Found at i:21714453 original size:22 final size:22
Alignment explanation
Indices: 21714424--21714506 Score: 73
Period size: 22 Copynumber: 3.8 Consensus size: 22
21714414 TTATTTAATA
21714424 TTTA-TTTATTTTATTTTTATT
1 TTTATTTTATTTTATTTTTATT
* * *
21714445 TTTGTTTTACTTT-TCTTTATTT
1 TTTATTTTATTTTATTTTTA-TT
* *
21714467 TTTATCTTTA-TTTATTTTCACT
1 TTTAT-TTTATTTTATTTTTATT
*
21714489 TTTATTTTATTCTATTTT
1 TTTATTTTATTTTATTTT
21714507 CTTTAAATAA
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
21 12 0.24
22 29 0.59
23 8 0.16
ACGTcount: A:0.16, C:0.07, G:0.01, T:0.76
Consensus pattern (22 bp):
TTTATTTTATTTTATTTTTATT
Found at i:21714458 original size:17 final size:16
Alignment explanation
Indices: 21714432--21714496 Score: 60
Period size: 17 Copynumber: 3.9 Consensus size: 16
21714422 TATTTATTTA
*
21714432 TTTTATTTTTATTTTT
1 TTTTACTTTTATTTTT
*
21714448 GTTTTACTTTTCTTTATT
1 -TTTTACTTTTATTT-TT
*
21714466 TTTTA-TCTTTATTTAT
1 TTTTACT-TTTATTTTT
*
21714482 TTTCACTTTTATTTT
1 TTTTACTTTTATTTT
21714497 ATTCTATTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 7
0.75 0.12 0.13
Matches are distributed among these distances:
16 13 0.33
17 24 0.62
18 2 0.05
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.77
Consensus pattern (16 bp):
TTTTACTTTTATTTTT
Found at i:21714480 original size:27 final size:26
Alignment explanation
Indices: 21714423--21714485 Score: 67
Period size: 27 Copynumber: 2.4 Consensus size: 26
21714413 TTTATTTAAT
*
21714423 ATTTATTTAT-TTTATTTTTATTTTTG
1 ATTTATTT-TCTTTATTTTTATCTTTG
*
21714449 TTTTACTTTTCTTTATTTTTTATCTTT-
1 ATTTA-TTTTCTTTA-TTTTTATCTTTG
21714476 ATTTATTTTC
1 ATTTATTTTC
21714486 ACTTTTATTT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
26 10 0.32
27 11 0.35
28 10 0.32
ACGTcount: A:0.16, C:0.06, G:0.02, T:0.76
Consensus pattern (26 bp):
ATTTATTTTCTTTATTTTTATCTTTG
Found at i:21714658 original size:119 final size:120
Alignment explanation
Indices: 21714514--21714812 Score: 437
Period size: 119 Copynumber: 2.5 Consensus size: 120
21714504 TTTCTTTAAA
* *
21714514 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAA
1 TAAAAATC-AAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAA
* * *
21714579 AATCAAAATTTCCAAAAAAA-TATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCT
65 AAT-AAAATTTCAAAAAAAAGGATTTTTGA-GGAAAAGTTGAAAGTATAAATTTTCCT
*
21714635 TAAAAAT-AAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCTTAAAA
1 TAAAAATCAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
* *
21714699 ATAAATTTTCAAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATAAATTTTCCT
66 ATAAAATTTCAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATAAATTTTCCT
* *
21714754 TGAAAATCAAAATTTC-AAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAATTTTCAAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
21714813 ACACAAGAAC
Statistics
Matches: 163, Mismatches: 11, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
118 15 0.09
119 133 0.82
120 8 0.05
121 7 0.04
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (120 bp):
TAAAAATCAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
ATAAAATTTCAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATAAATTTTCCT
Found at i:21714685 original size:59 final size:60
Alignment explanation
Indices: 21714514--21714812 Score: 437
Period size: 59 Copynumber: 5.0 Consensus size: 60
21714504 TTTCTTTAAA
*
21714514 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATC-AAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
21714575 TGAAAATCAAAATTTCCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
*
21714635 TAAAAAT-AAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCT
1 TAAAAATCAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
** *
21714694 TAAAAAT-AAATTTTCAAAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATAAATTTTCCT
1 TAAAAATCAAATTTTCAAAAAAAA-TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
* *
21714754 TGAAAATCAAAATTTC-AAAAAAATATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATCAAATTTTCAAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
21714813 ACACAAGAAC
Statistics
Matches: 218, Mismatches: 17, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
59 106 0.49
60 98 0.45
61 14 0.06
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (60 bp):
TAAAAATCAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:21722498 original size:26 final size:26
Alignment explanation
Indices: 21722469--21722520 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
21722459 TCATACAATG
21722469 GTCCCTTAAGCCTTCACGTGAAGTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTT
21722495 GTCCCTTAAGCCTTCACGTGAAGTTT
1 GTCCCTTAAGCCTTCACGTGAAGTTT
21722521 CATGGCAAGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.19, C:0.27, G:0.19, T:0.35
Consensus pattern (26 bp):
GTCCCTTAAGCCTTCACGTGAAGTTT
Found at i:21722569 original size:27 final size:27
Alignment explanation
Indices: 21722538--21722596 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
21722528 AGACGACTCG
**
21722538 TTTTTTATTTTTCACGA-TTTTTAAAA
1 TTTTTTATGGTTCACGATTTTTTAAAA
* *
21722564 CTTTTTATGGTTCAGGATTTTTTAAAA
1 TTTTTTATGGTTCACGATTTTTTAAAA
21722591 TTTTTT
1 TTTTTT
21722597 CGGAAGGATT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 13 0.48
27 14 0.52
ACGTcount: A:0.24, C:0.07, G:0.08, T:0.61
Consensus pattern (27 bp):
TTTTTTATGGTTCACGATTTTTTAAAA
Found at i:21723944 original size:26 final size:26
Alignment explanation
Indices: 21723906--21723958 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21723896 TCGGTCTGAT
*
21723906 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
21723932 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21723958 C
1 C
21723959 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21724846 original size:26 final size:26
Alignment explanation
Indices: 21724810--21724862 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21724800 CTGGTCCAAT
21724810 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21724836 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21724862 C
1 C
21724863 CTAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21726638 original size:26 final size:26
Alignment explanation
Indices: 21726602--21726654 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21726592 CTGGTCTGAT
21726602 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21726628 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21726654 C
1 C
21726655 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21727482 original size:26 final size:26
Alignment explanation
Indices: 21727453--21727505 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21727443 CTGGTCCAAT
21727453 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
21727479 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21727505 C
1 C
21727506 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21728384 original size:26 final size:26
Alignment explanation
Indices: 21728355--21728407 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21728345 CCGATCCGAT
*
21728355 CTTAGACTAGC-AATGAACTCGATATG
1 CTTAGACT-GCGAATGAACTCCATATG
21728381 CTTAGACTGCGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
21728407 C
1 C
21728408 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:21729297 original size:25 final size:26
Alignment explanation
Indices: 21729254--21729302 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
21729244 CCGGTCATAT
* *
21729254 CTTAGACTATGAATGAACTCCGTAGG
1 CTTAGACTAGGAATAAACTCCGTAGG
21729280 CTTAGACT-GGAATAAACTCCGTA
1 CTTAGACTAGGAATAAACTCCGTA
21729303 TGCCTAAGAC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTAGG
Found at i:21729307 original size:898 final size:897
Alignment explanation
Indices: 21727410--21734443 Score: 8664
Period size: 909 Copynumber: 7.9 Consensus size: 897
21727400 TGCGTATTAA
** * *
21727410 CCGAGCCCAGCATGTGCTGCCGCAACCCTCAATCTGGTCCAATCTTAGACTGGGAATGAACTCCA
1 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CAATCTTAGACTGGGAATGAACTCCG
* *
21727475 TATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCT
65 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * *
21727540 CAGCCGGCTAGAGGGGCGGGATGCGTAAGCCGGAGATCGAC-CGGGTCCCCCTCTGCGTGCTGTC
130 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-CTCGGGTCCCCCTCTG-GTGCTGTC
* ** ** * *
21727604 GATCCTGCTGTCGCAACTATCAGTCCAATCTGATCTTAGACTGAGG-ATGAACTCTGTATGCCTA
193 GATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTG-GGAATGAACTCCGTATGCCTA
* * *
21727668 AGCCAATCGATGAAACAAGCAGGCGGGC-GGACGGGTGGGCACTACGTCGGCCAGAGAGACGGGA
257 AGCCAACCGATGAAAC--G-A-GCGGGCAGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* * * **
21727732 TGTGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCATATCTTCATAATTT-TGTGTGC
317 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTCTGCATGC
21727796 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
381 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * ** * **
21727861 AGCAAGACGACTCATTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAA
446 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAA
* *
21727926 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
511 AATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
*
21727991 GCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
576 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * *
21728056 CCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACATGGAAAATCTCAAATTCTCTTTAAGGG
641 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
21728121 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTA
706 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * * *
21728186 TCACACATCATGTGCACACACCCCCCAGCCCCCCCGATCGCCGGAACCCCAATGCCA-ACGGTCA
771 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATTGTCGGAACCCCAATG-CAGCCGGTCA
* * * ** * * *
21728250 -ATTCTCCGAGGATGCTCCGATGATGGTGCCCTGACGAAGAAAAATGCGGTACCAGCACAT-C
835 GGTTCTCCGATGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
* * * * * *
21728311 CCTGAGCCCAGCATGTGCTGGCGCAACCCTTGGTCCGATCCGATCTTAGACTAGCAATGAACT-C
1 CC-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CAATCTTAGACTGGGAATGAACTCC
* *
21728375 GATATGCTTAGACTGCGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
64 G-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* *
21728440 CTCAGCCGCCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGCTCGGGTCCCCCTCTGGATGCTG-
128 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGCTCGGGTCCCCCTCTGG-TGCTGT
* ** * ** **
21728504 CTGATCCTGCTGCCCCAACCCTTGGTCCAGTTTGATCTTAGGTTGGGAATGAACTCCGTATGCCT
192 C-GATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
21728569 AAGACAATCGACGAAACAAGCGGGCAGGCGGGCGGGCATTACACCGGCCAGAGAGACGGGATGCG
256 AAGCCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* * * *
21728634 CAAGCTGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTACCAATG
321 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
* * **
21728699 CCATTTTTATGGCTTGTAAATTCATACAATGG-CCTATTAAGCCTTCACGTGAAGTTTTATGGTG
386 CCATTTTTATGGCTTGTAAATTCATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
21728763 AGACGACTCGTTTTCTGTTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGG-TTTTTTAAAAT
450 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-AGGATTTTTTAAAAT
* * * * *
21728827 TTTTTCGGAAGGAGTTTTTGCGCCTAACTTGGTAGACATGATTCTTGTATTTTTGTTGGCAATG-
514 TTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGC-ATGC
* * *
21728891 ACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCAC
578 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * * *
21728956 CAATACAAACACTTTAATGGCTACAGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGG
643 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
21729021 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
708 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
21729086 GTACATCATGTGCGCACACCCCCCCGCCCTCCCGATTATCGGAACCCCAATGCAGCCGATCAGGT
773 GCACATCATGTGCGCACACCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCAGCCGGTCAGGT
* * * * *
21729151 TCTCCGACGATGCTCTGGCGATGGTACCCCGACGATGAAAAATGCGGCAACAGCACATGC
838 TCTCCGATGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
* * ** **
21729211 CCAAGCCTAGCATGTGCTGCCAAAACCCTCGGTCCGGTCATATCTTAGACTATGAATGAACTCCG
1 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCA-ATCTTAGACTGGGAATGAACTCCG
* * * * *
21729276 TAGGCTTAGACT-GGAATAAACTCCGTATGCCTAAGACAATCCACGAAATGAGCGTGCGGGCGCT
65 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * ** * *
21729340 TAGTCGGCCAGAGGGCCGGGATGTGCAAGCAGGGGATCAATCAGGT-CCCCTCTACGTGC--T--
130 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGCTCGGGTCCCCCTCT-GGTGCTGTCG
* * *
21729400 AT-C-G-T-----AACCCTTAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAG
194 ATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * * **
21729457 TAAACCGATGAAACGA----GC--GC---C-TGC-CTA------CTAGAGAGACGGGATGTGTGA
259 CCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
21729505 GCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
324 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
21729570 TTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
389 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* **
21729635 GACTAGTTTTCTATTTTTCACGATTTACGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTT
454 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTT
* * * *
21729699 TCAGAAGGAGTTTTGGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
518 TCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
* * * *
21729764 AACATTTAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
583 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
21729829 CAAACACTTTAATGACCACTGACAGCAAACCTGTAAAATCTCAAACGCTCTTTAA-GGGGTGTGA
648 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
21729893 GTTCTAAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACA
713 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * * *
21729958 TCATGTGCGGACACCCCCCGGCCCACCCG-TTCGCCGGAACCCCATTGCCGTCAGTCAGGTTCTT
778 TCATGTGCGCACACCCCCCGGCCCCCCCGATT-GTCGGAACCCCAATGCAGCCGGTCAGGTTCTC
*
21730022 CGATGATGCT-TCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
842 CGATGATGCTCT-GGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
21730078 CTC-AGCCCAGCATGTGCTGCCGCAA-CC-C--T-CGG----TC-----C-----A-G---TCCG
1 C-CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCAATCTTAGACTGGGAATGAACTCCG
* *
21730119 -AT-CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACGCACGAAACGA--GTGCATGGGCG
65 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC--GGGCG
* * *
21730180 CTC-GATCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATTGGC-CGGG-CCCCCTCTGTGTGCT
128 CTCAG-CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGCTCGGGTCCCCCTCTG-GTGCT
* * * * * *
21730242 GTCGATCTTCCTACCACAACCATTAGT-CGGTCCGATCTTAGACTGGGAATGAACT-CGTATGCC
190 GTCGATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
21730305 TAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCAGGCACTATGTCGGCCAGAGAGACGGGATGC
255 TAAGCCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * ***
21730370 GCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTTATATTTCTATGTGCCAAT
320 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
* *
21730435 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAAGTGAACTTTCATGGCA
385 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
21730500 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCAAGATTTTTTAAAATT
450 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATT
* * *
21730565 TTTTTGGAAGGA-TTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
515 TTTTCGGAAGGAGTTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCA
* * * *
21730629 CAAAAAAATTTAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCGCC
579 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * * *
21730694 ATTTCAGACACTTTAATTGCTACTGGCAGCAATCCAGTAAAATCTCAAATGCTCTTTAACGGGGT
644 ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
21730759 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCG
709 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
*
21730824 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATTGTTGGAACCCCAAT-C-GCCGGTCAGGTT
774 CACATCATGTGCGCACACCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCAGCCGGTCAGGTT
* * * *
21730887 CTCCGACGATGCTCCT-GTGATGGTGCCACGACGAAG---AA-----CACCAGCAAATGC
839 CTCCGATGATGCT-CTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
* * *
21730938 CCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCG
1 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CAATCTTAGACTGGGAATGAACTCCG
* * * * *
21731003 TATGCGTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCGAAACAAGCTTGCGGGCGCA
65 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * ** * * *
21731068 CAGTCGACCAAAAGGGCGGGATGCATAAGCCGGGGATCGATTGGGTCCCCCTCTGCATGCTGTCG
130 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGCTCGGGTCCCCCTCTG-GTGCTGTCG
** * * * *
21731133 ATCCTGCTATCGCAACCCT-TGATCTGGTCTGATCTTAGACTGGCAATGAACTCCGTATGCCTAA
194 ATCCTGCTGCCGCAACCCTCAG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
21731197 GCCAACCGACGAAACGAG-TGG-A------TGGGCACTACACCGGCCAGAGAGACAGCATGCGCA
258 GCCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
21731254 AGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCC
323 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* *
21731319 ATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGA
388 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * ** **
21731384 TGACTCGTTTT-TTTTTTTCACGATTTACGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
453 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTT
* *
21731448 TCGGAAGGAGTTTTGGCCCCCAAACTTGGTAGACGTGATCCTTGTAATTTTTTTGGCATGCACAA
518 TCGGAAGGAGTTTTTG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
21731513 AAAAATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATT
582 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
21731577 TCAAACACTTTAATGGCTACTGGCAGCAGACCTGTAAAATCTCAAATACTCTTTAAGGGGGTGTG
647 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * * *
21731642 AGTTCTCTAGGTTTGATGAGGGATAGGGGGCCAATATGAGGG-CAAGTACCAGCACGCAACACAC
712 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
21731706 ATCATGTGTG--CACCCCCCGGCCCCCCCGATCGCCGGAACCCCAAT--A-CC-G-CCGG---T-
777 ATCATGTGCGCACACCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCAGCCGGTCAGGTTCTC
*
21731760 C-A-GATTCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
842 CGATGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
* * * * *
21731814 CCGAGCCCGGCATGTGCTGTCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCG
1 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC-AATCTTAGACTGGGAATGAACTCCG
* ** * * *
21731879 TATCCTTAGACTACGAATGAACTCTGTATGGCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCT
65 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * * *
21731944 TAGTCGGCCAGACGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGTTGTCG
130 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGCTCGGGTCCCCCTCTG-GTGCTGTCG
* ** * *
21732009 ATCCTACTGTTGCAAGCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
194 ATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
21732074 CCAACCGACGAAACGAGC-GG-A--CGGGCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAA
259 CCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
21732135 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCAGCATGCCAATGCCA
324 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
21732200 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
389 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
21732265 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTT
454 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* * *
21732330 CGGAAGGAG-TTTTGCCCCAATCTTGGTATACGTGATCCTTGTATTTTTTTTGGCATGCCCAAAA
519 CGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
* *
21732394 AAATTCAGCTAAAAACTTGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
584 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
21732459 AGACACTTTAATGGCTATTGGCAGTAAACGTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAG
649 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
21732524 TTCTCAAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
714 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * *
21732589 CATGTGCGTACACCCCCCAGGCCCCCCTGATTGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCT
779 CATGTGCGCACACCCCCC-GGCCCCCCCGATTGTCGGAACCCCAATGCAGCCGGTCAGGTTCTCC
* **
21732654 AATGATGCTCCGGTGATGGTGCCCCAACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCAC
843 GATGATGCT-C-----T-G-G------CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCAC
21732719 ATGC
894 ATGC
** * ** * * *
21732723 CCGAGCGTAGCATGTGCTGCCGTAACCCTCAATCCAGTCCGATCTTAGACTGGGAATGAACTCTG
1 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CAATCTTAGACTGGGAATGAACTCCG
* * * *
21732788 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGCGTACGGGCGCT
65 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *
21732853 CAGCCAGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACT-GTGTCCCACTCTAGGTGCTATC
130 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-CTCGGGTCCCCCTCT-GGTGCTGTC
* * * * *
21732917 GATCATGCTGCTGCAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAATTCCGTTATGCCT-
193 GATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCG-TATGCCTA
* * * *
21732981 AGCCAACCGATGAAACGAGC--G--GGCGGTC---CACAACGCCGACCAGAAGAGGCGGGTAT-C
257 AGCCAACCGATGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAG-AGAGACGGG-ATGC
* *
21733038 GCAAGCCGTGGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCCTTATTTCTGCATGCCA
320 GCAAGCCGT-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT-CATATTTCTGCATGCCA
*
21733103 ATGCCATTTTTATGGCTTGT-AATTCATCACTAATGGT-CC-TATGCCTTC-CAGTGAAGTTTCA
383 ATGCCATTTTTATGGCTTGTAAATTCAT-AC-AATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCA
** *
21733164 TGGCAAGACGACTCCGTTTTCTA-TTTTCACGATTTTTGAAACTTGTTTTTGGTTCGGGATTTTT
445 TGGCAAGACGACT-CGTTTTCTATTTTTCACGATTTTTGAAACTT-TTTACGGTTCAGGATTTTT
* *
21733228 TAAAAATTTTTCGGAAGGAG-TTTTGCCCCAAACTTGGTATACGTGATCCTTGTATTTTTTTTGG
508 TAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG
21733292 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
573 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * *
21733357 GTCCCCATTTCAGACACTTTAATGGCTATTGGCAGTAAACGTGTAAAATCTCAAATGCTCTTTAA
638 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
21733422 CGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCAC
703 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
21733487 CCATCGCACATCATGTGCGTACACCCCCCCTGGCCCCCCCGATTGTCGGAACCCCAATGCCGTCG
768 CCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCCCGATTGTCGGAACCCCAATGCAGCCG
*
21733552 GTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGACGATGGTGCCCCGATGAAGAAAAATG
831 GTCAGGTTCTCCGATGATGCT-C--------TG----G-CGATGGTGCCCCGACGAAGAAAAATG
21733617 TGGCACCAGCACATGC
882 TGGCACCAGCACATGC
* * * * * *
21733633 CCGAGCACAGCATGTGCTACCGTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCG
1 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT-CAATCTTAGACTGGGAATGAACTCCG
* * *
21733698 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCAGGCGCT
65 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * *** *
21733763 CAGCCGGCCAGAGGGGCGGGATGCACAAGCTGGGGATTGGCT-GTGTCATGCTCTAGGTGCTATC
130 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGCTCGGGTCCCCCTCT-GGTGCTGTC
* * *
21733827 GATCATGCTGCCGCAACCCTCAGTCCGGTCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAA
193 GATCCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
21733892 GCCAACCGATGAAATGAGCGGG-ACGGCGAGTAGGCGGCCACAACGCCGGCTAGAGAGACGAGAT
258 GCCAACCGATGAAACGAGCGGGCA-GGC--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGAT
*
21733956 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCATGCCA
318 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
21734021 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
383 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
*
21734086 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAA
448 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-GATTTTTTAAA
* * * * *
21734150 ACTTTTTCGGAA-GAATTTTTGGGCCGAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCAT
512 ATTTTTTCGGAAGGAGTTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
* **
21734214 GCACAAAAAAATTTAGCTAAAAACTTTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
576 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
21734279 CCCATCTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
641 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * *
21734344 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGAGCCAATATAAGGGCCAAGTACCAGCACCCA
706 GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
*
21734409 TCGCACATCATGTGTGCACACCACCCCGGCCCCCC
771 TCGCACATCATGTGCGCACACC-CCCCGGCCCCCC
21734444 TATCGTCGGA
Statistics
Matches: 5363, Mismatches: 573, Indels: 377
0.85 0.09 0.06
Matches are distributed among these distances:
840 4 0.00
841 9 0.00
842 84 0.02
843 5 0.00
844 1 0.00
846 3 0.00
847 1 0.00
849 1 0.00
852 26 0.00
853 27 0.01
854 9 0.00
856 2 0.00
857 2 0.00
858 2 0.00
859 1 0.00
860 34 0.01
861 3 0.00
862 5 0.00
863 4 0.00
864 1 0.00
865 5 0.00
866 6 0.00
867 195 0.04
868 414 0.08
869 361 0.07
870 113 0.02
871 5 0.00
874 5 0.00
875 5 0.00
876 254 0.05
877 33 0.01
879 119 0.02
880 447 0.08
881 340 0.06
883 8 0.00
884 28 0.01
885 59 0.01
886 81 0.02
887 34 0.01
888 31 0.01
889 31 0.01
890 1 0.00
891 1 0.00
892 2 0.00
893 2 0.00
894 1 0.00
895 5 0.00
896 1 0.00
897 18 0.00
898 570 0.11
899 117 0.02
900 5 0.00
901 9 0.00
902 230 0.04
903 1 0.00
906 11 0.00
907 19 0.00
908 99 0.02
909 620 0.12
910 362 0.07
911 2 0.00
912 2 0.00
913 4 0.00
914 3 0.00
915 1 0.00
916 1 0.00
917 9 0.00
918 95 0.02
919 343 0.06
920 18 0.00
921 13 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCAATCTTAGACTGGGAATGAACTCCGT
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGCTCGGGTCCCCCTCTGGTGCTGTCGAT
CCTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
AACCGATGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG
GAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCAGCCGGTCAGGTTCTCCGAT
GATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGC
Found at i:21731019 original size:26 final size:26
Alignment explanation
Indices: 21730983--21731033 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
21730973 GGTCCAATCT
21730983 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCGTATGCG
21731009 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
21731034 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCG
Found at i:21732804 original size:26 final size:26
Alignment explanation
Indices: 21732766--21732818 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21732756 CCAGTCCGAT
* *
21732766 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21732792 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21732818 C
1 C
21732819 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21733595 original size:14 final size:14
Alignment explanation
Indices: 21733578--21733604 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
21733568 ATGCTCCGGT
21733578 GATGGTGCCCCGAC
1 GATGGTGCCCCGAC
21733592 GATGGTGCCCCGA
1 GATGGTGCCCCGA
21733605 TGAAGAAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.33, G:0.37, T:0.15
Consensus pattern (14 bp):
GATGGTGCCCCGAC
Found at i:21733705 original size:26 final size:26
Alignment explanation
Indices: 21733676--21733728 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21733666 CCAGTCCGAT
21733676 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21733702 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21733728 C
1 C
21733729 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21735261 original size:26 final size:26
Alignment explanation
Indices: 21735232--21735284 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21735222 CCGGTTGGAT
21735232 CTTAGACTAGGAATGAAATCCGCATG
1 CTTAGACTAGGAATGAAATCCGCATG
* *
21735258 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAAATCCGCATG
21735284 C
1 C
21735285 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGCATG
Found at i:21736181 original size:26 final size:26
Alignment explanation
Indices: 21736131--21736183 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21736121 CTGGTTCCAT
**
21736131 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21736157 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21736183 C
1 C
21736184 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21737763 original size:26 final size:26
Alignment explanation
Indices: 21737734--21737786 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21737724 CTGGTCTGAT
*
21737734 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21737760 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21737786 C
1 C
21737787 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21738674 original size:26 final size:26
Alignment explanation
Indices: 21738638--21738690 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21738628 CTGGTCTGAT
*
21738638 CTTAGGCTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
21738664 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21738690 C
1 C
21738691 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21738859 original size:26 final size:26
Alignment explanation
Indices: 21738823--21738875 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21738813 CCGATCCGAT
* *
21738823 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21738849 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21738875 C
1 C
21738876 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.