Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 128 of 195
Found at i:21738973 original size:185 final size:185
Alignment explanation
Indices: 21738635--21739034 Score: 507
Period size: 185 Copynumber: 2.2 Consensus size: 185
21738625 GGTCTGGTCT
* *
21738635 GATCTTAGGCTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAA
1 GATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
21738700 CCCACGAAATGAGCATGCGGGCACTCAGCCAGCCAGAGGGGTAGGATCTGCAAGTCGGGGATTGG
66 CCAACGAAACGAGCATGCGGGCACTCAGCCAGCCAGAGGGGTAGGATCTACAAGTCGGGAATCGG
* * *
21738765 TCGGGTCCTCCTCTGTATGCTACCGATCCTGCTACTGCAACCCTCAATCCGATCC
131 TCGGGTCCCCCTCTGCATGCTACCAATCCTGCTACTGCAACCCTCAATCCGATCC
* * *
21738820 GATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
21738885 CCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGC-ACAAG-CGAGGAATC
66 CCAACGAAACGAGCATGCGGGCACTCAGCCAGCCAGAGGGGTAGGAT-CTACAAGTCG-GGAATC
* * * *** * * * *
21738948 GGTTGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCATAACCCTCAGTCTGGTCT
129 GGTCGGGTCCCCCTCTGCATGCTACCAATCCTGCTACTGCAACCCTCAATCCGATCC
* *
21739005 GATCTTATACTGGAAATAAACTCCGTATGC
1 GATCTTAGACTGGGAATAAACTCCGTATGC
21739035 CTAAGCCAAC
Statistics
Matches: 181, Mismatches: 32, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
184 2 0.01
185 178 0.98
186 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.27, T:0.23
Consensus pattern (185 bp):
GATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCAACGAAACGAGCATGCGGGCACTCAGCCAGCCAGAGGGGTAGGATCTACAAGTCGGGAATCGG
TCGGGTCCCCCTCTGCATGCTACCAATCCTGCTACTGCAACCCTCAATCCGATCC
Found at i:21739740 original size:26 final size:26
Alignment explanation
Indices: 21739711--21739763 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21739701 CCGATCCATT
* *
21739711 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21739737 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21739763 C
1 C
21739764 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21740632 original size:26 final size:26
Alignment explanation
Indices: 21740603--21740655 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21740593 CCGGTCCGAT
*
21740603 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21740629 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21740655 C
1 C
21740656 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21741535 original size:26 final size:26
Alignment explanation
Indices: 21741506--21741556 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
21741496 GGTCTGATCC
21741506 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
21741532 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
21741557 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:21742896 original size:899 final size:898
Alignment explanation
Indices: 21738801--21743277 Score: 5833
Period size: 888 Copynumber: 5.0 Consensus size: 898
21738791 TCCTGCTACT
** * * *
21738801 GCAACCCTCAATCCGATCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
1 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * *
21738866 CTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGA
66 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGA
* * * **
21738931 TGCACAAG-CGAGGAATCGGTTGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGCCATAACCCTC
131 TGCACAAGCCG-GGGATCGGTT-GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC
* * * * *
21738995 AG-TCTGGTCTGATCTTATACTGGAAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-
194 GGTTC-GATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * ** * * *
21739058 AAGCGGGCGGGCAAGCGGGCACTACGCTGCCCAGAGAGACGGGATGCACAAGCCGTGGATCGATA
258 GA-CGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * *
21739123 GGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
322 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGT
*
21739188 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATCACTCGTTTTCTAT
387 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
* * *
21739253 TTTTCACGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGAAAGGAATTTT
452 TTTTCACGA-TTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* *
21739317 GGCCCCAAACTTGGTGGACGTGATCCTTGTATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAA
515 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* * * *
21739382 AACTCGAAGTGTACAAGATTCTGTGACCATTTG----AA-TGTCCCCATTTTAGTCACTTTAATC
580 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
21739442 GCTACTGGAAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTA
645 GCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
21739507 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
710 ATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
21739572 CCCCCCTGTCCCCCCGATCTCCGGAACACTAATGCCGCTGGTCAGGTTCTCC---G--G-T----
774 CCCCCC-GGCCCCTCGATCT-CGGAACCCCAATGCCGC-GGTCAGGTTCTCCGGTGATGCTCCAA
* *
21739627 -GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGAACATGCTCGAGCCCAGCATGTGCTGCC
836 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * *
21739689 GTAACCCTCAGTCCGATCC-ATTCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
1 GCAACCCTCGGTCCGGTCCGA-TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * * *
21739753 ACTCCATATGCCTAAGTCAGCCCACGAAACGAGCCTGCGGGTGCTCAACCGGCCAGA-CGGCCAG
65 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-
* * * * ** * *
21739817 GATGCGCAAGTCGGGGATCGGTCGGGTTCCCCTCTGCGTGCTGCCGATCCTATTACCACAACCCT
129 GATGCACAAGCCGGGGATCGGT-TGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCT
* * * * * * *
21739882 CAGTTTGGTCTGATCTTAGACTAGGAATGAACTCCGTTTGCCTAAGCCAACCGACAAAACGAGTG
193 CGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * *
21739947 GGCGGACGGGCGGGCGGGCACTACGCCAGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAG
258 GACGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
21740012 GGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
323 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * *
21740077 AATTCAAACAGTGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
388 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
* * * *
21740142 TTTCATGATTTTCAAAACTTTCTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
453 TTTCACGATTTT-GAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * *
21740207 CCCCAAACTTGGTAGA--TAGATTCCTTCTAATTTTTTTGGCATGCATAAAAAAATTCAGCTAAA
517 CCCCAAACTTGGTAGACGT-GA-TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
21740270 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
580 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
21740335 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
645 GCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
21740400 ATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATGATGTGCG--CA-
710 ATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * * *
21740462 CCCCCC-G---ATC-A-C-CAGAACGCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGACG
774 CCCCCCGGCCCCTCGATCTCGGAACCCCAATGCC-GCGGTCAGGTTCTCCGGTGATGCTCCAACG
* * *
21740520 ATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACAAGCCCGAGCCCAGTATGTGCTGCC
838 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * *
21740581 ACAACCCTCGATCCGGTCCGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
1 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
21740646 CTCCGTATGCCTAAGTTAACCCGCGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
66 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGA
* ** ** * * * * * *
21740711 TGCATAAGCCTAGGATCAATCAGGTCCCCCTCTACGTGCTGCCGATCTTACTGTCGCAACTCTCG
131 TGCACAAGCCGGGGATCGGT-TGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
* * * ** * *
21740776 G-CCCAGTCTGATCTTAGACTGGGAATGAATTTTGTATGCCTAAGCCAACTGACGAAACAAGCGG
195 GTTCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * * *
21740840 A-TG--GGG-GGGCGGGCACTGCGTCGGCTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGG
259 ACGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
21740901 GTGGTAGGTGGGTTTAGGCACATCTTCAAACTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
324 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * * * *
21740966 ATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGAGTCATGTTCTATTT
389 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
* * * ** *
21741031 TTTAGGATTTTCGAAACTTTTTGCGGTTCAGGATTTTTTAAATTTTTTTCGGAATTATTTTTGGC
454 TTCACGATTTT-GAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * ** * *
21741096 CCCAAACTTAGTAGACGTGATCCTTGTATTTTTTTTCGTGTGGACAAAAAAATTCAGCTAAACAC
518 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
21741161 TC-AGAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGC
583 TCGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* *
21741225 TACTGGAAGCAAACCTGTAAAATCACAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
647 TACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* ** * *
21741290 GAGGGATAGGTGGCCAATATAATGGCCAAGTACCAAAACCCATCGCACATCATGTGCACCCACCC
712 GAGGGATAGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * ** **
21741355 CCCTCTGCCCCCCAGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTTTAGT
776 CCC-CGGCCCCTC-GATC-TCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGGTGATGCTCCAAC
* * * *
21741420 GATGGTGCCCCGACGAAGAAAAATACGGCTCCAGCACATGCCTGAGCCCAGCATGTGCTGTC
837 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* *
21741482 GCAACCCTCGGTCCGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
1 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
21741547 CTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGAGCGCTCAGTCAGCCAGAGGGGC-AGG
66 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGA-G
* *** * * *
21741611 ATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCTGCTTGCTGTCGATCCTG-TCGCCGCAATCCT
130 ATGCACAAGCCGGGGATCGGTTG-GTCCCCCTCTGCGTGCTGCCGATCCTGCT-GCCGCAACCCT
* * * * * *
21741675 TGGTCCGATCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAATCGATGAAATGAGCG
193 CGGTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * *
21741740 GGCGGGCGGGCGGGTGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
258 GACGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
21741805 GGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTGCGTGCTAATGCCATTTTTATGGCTTGTA
323 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTA
* * **
21741870 AATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAATTTCTATT
388 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATT
* * *
21741935 TTTCATGATTTTGAAACTTTTTGCGGTTCAGGACTTTTTAAAATTTTTTCGGAAGGAGTTTTGCC
453 TTTCACGATTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * * *
21742000 CCCTAACTTGTTAGACGTGATTCTTGTATTTTTTTTGGCCTGCACAAAACAATTCAGCTAAAAAC
518 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
21742065 TCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTATAATGGCT
583 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * **
21742130 ACTAGCAGCAAAATTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
648 ACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* **
21742195 AGGGACATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGCACA-CCC
713 AGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
*
21742259 CCCGGCCCCATCGATCGTCGGAACCCCAATACCGCGGTCAGGTTCTCCGGTGATGCTCCAACGAT
777 CCCGGCCCC-TCGATC-TCGGAACCCCAATGCCGCGGTCAGGTTCTCCGGTGATGCTCCAACGAT
* * *
21742324 GGTGCCCCGAC-AGAGAAAAATGCGTCACCAGCACATGCCCGAGCCTAGCATGTGCTGTC
840 GGTGCCCCGACGA-AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * *
21742383 GTAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTACGTTTAGACTGGGAATGAA
1 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * **
21742448 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGCCAACCAGAGGGGCGAGA
66 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGA
* * * *
21742513 T-CACAAGCCGGGGATCGGCTTGGTCCCCCTCTGCGTGCTACCGATCTTGCTACCGTAACCCTCG
131 TGCACAAGCCGGGGATCGG-TTGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCG
* *
21742577 GTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATG-TTAAGCCAATCGACGAAACGAGCGGA
195 GTTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGA
* * *
21742641 CGGACGGGCGGGCGGGCATTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATTGATAGGG
260 CGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * *
21742706 TGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGACTTGTAAA
325 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* * *
21742771 TTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGGCATGATAACTCGTTTTCTATTTT
390 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTT
* * * * *
21742836 TCACGATTTTGAAACCTTTTACGGTTCAGGATTTTTTTAAATTTTTTTGGAAGTAGTTTTGGCCC
455 TCACGATTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * *
21742901 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTTACCTAAAAACTC
520 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * * *
21742966 GAAGTGTACAAGATTTTGTGGCCATTCGAAAAAAATGTCCCCATTTCAGAAACTTTAATGGCTAC
585 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
21743031 TGGAAGCAAACCTGTAAAATATCAAATGCACTTTAAGGGGGTATGAGTTCTCGAGGTTTGATAAG
650 TGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
21743096 GGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCGCC
715 GGATAGGGG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CC
** * ***
21743161 CCAACCCCTCTGATCATCGGAACCCCAATGCCGCTGGTCAGGTTCTCCAGTGATGCTCCGGTGAT
778 CCGGCCCCTC-GATC-TCGGAACCCCAATGCCGC-GGTCAGGTTCTCCGGTGATGCTCCAACGAT
* * *
21743226 GGTGCCCCGACGAGGAAAAATGCGTCACCAGCACATGCCCGAGCCTAGCATG
840 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
21743278 CAAACTGGGA
Statistics
Matches: 3124, Mismatches: 396, Indels: 124
0.86 0.11 0.03
Matches are distributed among these distances:
881 25 0.01
882 1 0.00
883 1 0.00
884 2 0.00
885 1 0.00
886 2 0.00
887 13 0.00
888 975 0.31
889 9 0.00
890 9 0.00
891 8 0.00
892 264 0.08
893 145 0.05
896 1 0.00
898 5 0.00
899 478 0.15
900 90 0.03
901 526 0.17
902 106 0.03
903 7 0.00
904 273 0.09
905 183 0.06
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGA
TGCACAAGCCGGGGATCGGTTGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGG
TTCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC
GGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTT
CACGATTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
GCCCCTCGATCTCGGAACCCCAATGCCGCGGTCAGGTTCTCCGGTGATGCTCCAACGATGGTGCC
CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
Found at i:21745522 original size:26 final size:26
Alignment explanation
Indices: 21745482--21745534 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
21745472 CCAGTCCAAT
*
21745482 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGCAATGAACTCT-GTATG
21745508 CTTAGACTGGCAATGAACTCTGTATG
1 CTTAGACTGGCAATGAACTCTGTATG
21745534 C
1 C
21745535 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCTGTATG
Found at i:21746413 original size:26 final size:26
Alignment explanation
Indices: 21746376--21746428 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21746366 CTGGTCTGAT
*
21746376 CTTAGACTGGGAATAAACTACGTATG
1 CTTAGACAGGGAATAAACTACGTATG
* *
21746402 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATAAACTACGTATG
21746428 C
1 C
21746429 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTACGTATG
Found at i:21747304 original size:26 final size:26
Alignment explanation
Indices: 21747275--21747331 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
21747265 CCGGTCCGAT
* *
21747275 CTTAGACTGGGAATGATCTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
21747301 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
21747327 CTTAA
1 CTTAA
21747332 GTCAACCCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:21747315 original size:899 final size:897
Alignment explanation
Indices: 21743900--21749830 Score: 7191
Period size: 899 Copynumber: 6.7 Consensus size: 897
21743890 CTCAGTCTGA
* * * *
21743900 TCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAT-CGATGAAATGAGCGGACAGGC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA-CCCATCCGATGAAACGAGCGGGC-GGC
* * * * *
21743964 GGGCGGGCACTACGTCAGCCAGAGAGATGGGATGCACAAGCCGTCGATCGATAGGGTGGTAGGTG
64 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
21744029 GGTTTAGGCACATCTTCATA-TT-TTTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATAC
129 GGTTTAGGCACATCTTCATATTTCTTTG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
21744092 AATGGTCCCTTAAGCCTTCCCGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGAT
192 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * * * *
21744157 TTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-TGAAAGGAGTTATGACGCCAAAC
257 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGATTTTTGGCCCCAAAC
* * *
21744221 TTGGTAGACGTGATCCTTGTGTTTTTTTTTTGCATGCACAAAAAAATTCAGCTAAAAACTTGAAG
321 TTGGTAGACGTGATCCTTGT-ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
21744286 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATTGCTACTGGT
385 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* ** * *
21744351 AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCAAGTTCTGGAGGTTTGATGAGTGAT
450 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
**
21744416 AGAAGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGTGCA-A-----C-GCC
515 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCC
** * * *
21744473 CCCCCGATCACCGAAACCCCGCACAATG-CG--GGTGCAGGTTCTCCGACGTTGCTCCGGGATGG
580 CCCCCGATCGTCGGAA--CC-C-CAATGCCGTCGGT-CAGGTTCTCCGACGATGCTCCGCGATGG
* * * * * * * *
21744535 TGCCCCGACGAA-ACAAAATGCGGCACCAG--CA-GGCTCGAGCCAAAGCGATATG-TTCAGTAG
640 TGCCCCGACGAAGA-AAAATGCGACACCAGCACATGCCT-AAGCC-CAGC-ATGTGCTGCCGCA-
* *
21744595 ACCCT-GCGTCTGGTCCGATCTTAG-CTGGGAATGAACTTC--ATGCTT-GA-TAGGGAATGAAC
700 ACCCTCG-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAAC
* * **
21744654 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCA-AGGGGTGGGAT
763 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
* * * *** * * * * * *
21744718 GCGCAAG-TGAGGATCGACCAGGTCTGTCTC-ACGTAGCT-ACAATCTTACTGACATAAACCCTC
828 GCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGT-GCTGCCGATCCTACTGCCA-CAACCCTC
21744780 GATCCGG
891 GATCCGG
* *
21744787 T-TCGATCTTAGACTGAGAAT-AA-T-CGT-TGCCTAAACCA-CCGAATG-AAC-A-------GC
1 TCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCATCCG-ATGAAACGAGCGGGCGGC
* **
21744837 AGGTTGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTG
64 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*** *
21744900 GGTTTAGGCCACATCTTCATATTTCTGCCTGCCAATGCCA-TTTTATGGCTTGTGAATTCATACA
129 GGTTTAGG-CACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
21744964 A---T-CCTTAAGCCTTTACGTGATGTTTCATGGCAAGACGACTCGTTTTCTTTTTTTCACGATT
193 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
** * *
21745025 TTTGAAAC-TTTTATTGTTCGGGA-TTTTTAAAA-TTTTTCGGAAGGA-TTTTGGCCCCAACCTT
258 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTT
* * *
21745086 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCCAAAAACTCGAAGTGT
323 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
21745151 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
388 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
21745216 AAACCTGTAAAATCTCAAATGCTCTTTAA--AGGTGTGAG-TC-CGA-GTTTGATTGAGGGATAG
453 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA-TGAGGGATAG
* *
21745276 GGGGCCAAGAATAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACAACCCCCCGAC
517 GGGGCCAA-TAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAC-ACCCCCCGGC
* * * * * * * *
21745341 CCCCTCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAACGATGCACCGAGGATGGTAC
579 CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGTGC
* * * * * *
21745406 CCCGACGAAGAAAAATGCGACACCAGCACATG-CTCGAGCCCATCATTTGCTGTCACAACCCTTG
643 CCCGACGAAGAAAAATGCGACACCAGCACATGCCT-AAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * *
21745470 GTCCAGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGCAATGAACTCTGTATGC
707 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
21745535 CTAAGTTAA-CCACGGAATGAGCGTGTGGGCGCT-AGCCGGCCAGAGGGGCGGGATACGCAAGCC
772 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
* * * * * *
21745598 GGGGATC-AGTCGGGTCCCCCTCTGCATGCTGCCGATCCTACTGCCGCAACCCTTGGTCTGG
837 GGGGATCGA-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGG
** * * * *
21745659 TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCATCCGATGAAACGAGCGGGC-GGCG
** * ** *
21745724 GGCGGGCACTACGCCAACTAGAGAGACAAGATGCGCAAGCCGTTGATCGATAGGGTGGTAGGTGG
65 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
21745789 GTTTAGGCACATCTTCATA-TT-TTTGCATGCCAATGCCATTTTTATGGCTTTTCAATTCATACA
130 GTTTAGGCACATCTTCATATTTCTTTG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * **
21745852 ATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTGTTCTTGATT
193 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* ** *
21745917 TTTGAAACATTTTACGGTTCAAGATTTTTTAAAATTTTTTC-GAAAGGAATTTTGGCCCC---CT
258 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGATTTTTGGCCCCAAACT
* * * * *
21745978 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCAAAAAACTCAAACTG
322 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
21746043 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTACTGGCAG
387 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
21746108 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
452 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
** ** *
21746173 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCGTCGACCCC
517 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCC
* * * ** ** *
21746238 CTCGATCGTCGGAACCCCAATGCCGTCGATTAGGTTCTCCGGTGATGCTCCGGCGATGACGGCCC
582 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCC
* * * * *
21746303 GACGAAGAAAAATACGACACCAGCACATGCCTGAGCCTAGCATGTGCTGCCGCAACCCTCAGTCT
646 GACGAAGAAAAATGCGACACCAGCACATGCCTAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * *
21746368 GGTCTGATCTTAGACTGGGAATAAACTACGTATGCTTAGACAGGGAATGAACTCCGTATGCCTAA
711 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
21746433 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAAGATGCGCAAGCCGGGG
776 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
* * * ** *
21746498 ATCGGCCGGGTCCCCCTCTGTGTGCTGCCAATCCTACTGCCGTAACCCTCGATCCAG
841 ATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGG
* * *
21746555 TTTGATCTTAGATTGGGAATGACCTCCGTATGCCTAACCCATCCGATGAAACGAGCGGGCGGCCG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCATCCGATGAAACGAGCGGGCGG-CG
* * * *
21746620 GGCGGGCACTACGCCGGCCTGAGAGACAGGATGCGCAAGTCGCGGATCGATAGGGTGGTAGGTGG
65 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
21746685 GTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
21746750 GGTCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACGACTTGTTTTTTATTTTTCACGATTTT
195 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* *
21746815 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCACAAAGATTTTTGGCCCCAAACTTGG
260 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGG
** * *
21746880 TAGATATGATCCTTGTATTTTTTTTGCCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTAC
325 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
21746945 AAGATTTTGTAACCATTTGAAAAAAGTATCCCCATTTTAGACACATTAATGGCTACTGGCAGCAA
390 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
21747010 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGG
455 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
21747075 ACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACCCCCCGGCCCCCCC
520 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCC
* * * * *
21747140 GATCGTCAGAACCCCAATGCTGCCGGTCAAGTTCTCCGACGATGCTCCAGCGATGGTGCCCCGAT
585 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGAC
* * * *
21747205 GAAGAAAAATGTGTCAACAGCACATGCACT-TGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
649 GAAGAAAAATGCGACACCAGCACATGC-CTAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * *
21747269 TCCGATCTTAGACTGGGAATGATCTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCTTAAGT
713 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * * *
21747334 CAACCCACGAAATGAGCGTGCAGGCGCTAAGTCGGCCAAAGGGGCAGGATGCGTAAGTCGAGGAT
778 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
*** * * * *
21747399 CGGTTGGGTCCCCCTCTGCATGCTGCCGATCCTACTACCACAACCCTCGGTCCGT
843 CGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGG
* * * *
21747454 TCTGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAAT-CGACGAAACAAGCGACGGACG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAA-CCCATCCGATGAAACGAGCG--GG-C-
* * * * *
21747518 GGCGGGCGGGCACTTCGTCGGCCAGAAAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAG
61 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* ***
21747583 GTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
126 GTGGGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
21747648 CAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCATGA
191 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* *
21747713 TTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTCAGAAGGATTTTTGGCCCCAAA
256 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCAGAAGGATTTTTGGCCCCAAA
* * * * * * *
21747778 -TTGGTGGTCTTAATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAATTCGAAG
320 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
*
21747842 TGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
385 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
21747907 AGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAT
450 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
21747972 AGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
515 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCC
* * *
21748037 CCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCT-C--CG--G-T----GA---TGCTC
580 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCC
* * *
21748089 CGACAAAGAAAAATG-TAGCACCAGCACATGCCTCAGCCCAGCATGAT-CTGCCGCAACCCTCGG
645 CGACGAAGAAAAATGCGA-CACCAGCACATGCCTAAGCCCAGCATG-TGCTGCCGCAACCCTCGG
* * * * * **
21748152 TCCGGTCCGATCTTAGACTAGGAATTAACTCCATAAGCTTAGACTGGAAATGAACTTTGTATGCC
708 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * **
21748217 TAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGTTG
773 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCG
* * * * * * * * *
21748282 GGGATCAATCGGGTCCCCCTCTACGTGCTGCCGATCTTGCTACCGCAACCCTCGGTTCGG
838 GGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGG
** * * *
21748342 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGACGAAACGAAC--G-GGCGG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCATCCGATGAAACGAGCGGGCGGCGG
* **
21748404 GCGGGCACTATGCTAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-----G--GGT-GG
66 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
21748461 --TAGG------------------TG-G-CAATGCCATTTTTATGGCTTGTAAATTCATAGAATT
131 TTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * *
21748504 GTCCCTTAAGCCTTCACGTGACGATTCATGGCAAGATGACTCATTTTCTATTTTTGATGATTTTT
196 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * * * *
21748569 TAAAGTTTTTAAGGTTCGGGATTCTTTT-AAATTTTTTCGGAACGAGTTTTGGTCCCAAAATTGG
261 GAAACTTTTTACGGTTCGGGATT-TTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGG
* * * *
21748633 TAGACGTTATGCTTGCATTTTTTTTGGCATGCACAAAAAAAATTCAGCAAAAAACTCGAAGTGTA
325 TAGACGTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
21748698 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTGCTGGCAGCA
389 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
21748763 AACCTGCAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGG
454 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
*
21748828 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
519 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA-CCCCCCGGCCCCC
* * * * * ** *
21748893 CTGATCATCGGAATCCCAATGCCGTCAGTTAGGTTCTCCGGTGATGCTCCGACGATGATGCCCCG
583 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGTGCCCCG
* * * *
21748958 ACGAAGAAAAATACGGCACCAGCACATGCCTAAGCCCAGCATGTGCTGCCGCAACCCTCAGTCTG
647 ACGAAGAAAAATGCGACACCAGCACATGCCTAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* *
21749023 GTCTGATCTTAGACTGGGAATAAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
712 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
21749088 TCAACCCACGAACCGAGCGTGTGGGCGTTCAGCTGGCCAGAGGGGCAAGATGAGCAAGCCGGGGA
777 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * *
21749153 TCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCACAACCCTCGATCTGG
842 TCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGG
* *
21749209 TCTGATCTTATACTGGGAATGAACTCCGTATGCCTAACCCAAT-CGATGAAACGAGCGAGCGGGC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCC-ATCCGATGAAACGAGCGGGC-GGC
* * *
21749273 GGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTCGGTG
64 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
21749338 GGTTTAGGCACATCTTCATATATCTATGTGCTAATGCCA-TTTTATGGCTTGTAAATTCATACAA
129 GGTTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
21749402 TGGTCCCATAAGCCTTCTCGTGAAGTTTAATGGCAAGACGACTCGTTTTTTATTTTTCACAATTT
194 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *
21749467 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGTCCTCAAACTTG
259 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTG
* * *
21749532 GTAGACGTGATCCTTGCATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTAGAAGTGTA
324 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * *
21749597 CAAGATTTTGTGACTATTTGAAAAAAGTATCCCCATTTTAGACACATTAATGGCTACTGGCAGCA
389 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
21749662 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
454 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
21749727 GACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAAGTGTGCACACCCCTCCGG-CCCC
519 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCC-CCGGCCCCC
*
21749791 CCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCG
583 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
21749831 GTGATGGTGC
Statistics
Matches: 4353, Mismatches: 537, Indels: 297
0.84 0.10 0.06
Matches are distributed among these distances:
850 24 0.01
851 145 0.03
852 207 0.05
853 43 0.01
854 1 0.00
856 1 0.00
857 6 0.00
858 18 0.00
859 5 0.00
860 24 0.01
861 21 0.00
862 131 0.03
863 31 0.01
864 12 0.00
865 15 0.00
866 17 0.00
867 347 0.08
868 60 0.01
869 38 0.01
870 17 0.00
871 142 0.03
872 127 0.03
873 32 0.01
874 5 0.00
875 3 0.00
876 14 0.00
877 6 0.00
878 4 0.00
879 2 0.00
881 53 0.01
882 6 0.00
883 10 0.00
884 3 0.00
885 2 0.00
886 18 0.00
887 76 0.02
888 306 0.07
889 1 0.00
891 2 0.00
892 60 0.01
893 167 0.04
894 184 0.04
895 84 0.02
896 363 0.08
897 23 0.01
898 52 0.01
899 760 0.17
900 165 0.04
901 10 0.00
902 482 0.11
903 28 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCATCCGATGAAACGAGCGGGCGGCGG
GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTTTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGT
AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCG
ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGACGA
AGAAAAATGCGACACCAGCACATGCCTAAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA
CCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCACAACCCTCGATCCGG
Found at i:21749066 original size:26 final size:26
Alignment explanation
Indices: 21749030--21749082 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21749020 CTGGTCTGAT
21749030 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
*
21749056 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
21749082 C
1 C
21749083 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:21750334 original size:26 final size:26
Alignment explanation
Indices: 21750298--21750350 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21750288 CTGGTTCAAT
*
21750298 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21750324 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21750350 C
1 C
21750351 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21751233 original size:26 final size:26
Alignment explanation
Indices: 21751195--21751247 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21751185 CCAGTCCAAT
**
21751195 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
21751221 CTTAGACCAGGAATGAACTCCGTATG
1 CTTAGACCAGGAATGAACTCCGTATG
21751247 C
1 C
21751248 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACCAGGAATGAACTCCGTATG
Found at i:21752125 original size:26 final size:26
Alignment explanation
Indices: 21752087--21752159 Score: 137
Period size: 26 Copynumber: 2.8 Consensus size: 26
21752077 CCGGTCCGAT
*
21752087 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21752113 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21752139 CTTAGACTGGGAATGAACTCC
1 CTTAGACTGGGAATGAACTCC
21752160 GTATTCCTAA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.32, C:0.21, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21753906 original size:26 final size:26
Alignment explanation
Indices: 21753870--21753922 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21753860 CTGGTTCGAT
21753870 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21753896 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21753922 C
1 C
21753923 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21754964 original size:26 final size:26
Alignment explanation
Indices: 21754924--21754976 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21754914 CCTATCCGAT
* *
21754924 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21754950 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21754976 C
1 C
21754977 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21755841 original size:26 final size:26
Alignment explanation
Indices: 21755805--21755857 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21755795 CCGGTCCGAT
* *
21755805 CTTAGACTGGGAATGAATTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21755831 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21755857 C
1 C
21755858 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21756574 original size:878 final size:879
Alignment explanation
Indices: 21754146--21757471 Score: 4189
Period size: 906 Copynumber: 3.8 Consensus size: 879
21754136 CTATAAGCTA
* * * * * *
21754146 GGGATCGGCTGGGTCCCCCTCTGCGTGCTACTGATCCTGCTGCC-ACAACCCTCGGTTTGATCTA
1 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGA-AACACTCGGTCTGATCTG
* * * * * * * *
21754210 ATCTTAGATTGGGAGTGAACTCCATATGCCTAAGCCAACCAATGAAACGAG-T-G-GGAGAGCGA
65 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCTGGCGGGGGGCGG
** * * * *
21754272 GCACTACGTTGGCCTGAAAGACGGGATGCGCAAGCCGA-GGATCGATAG-GATGGTTGGTGGGTT
130 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTC-ATGGATCGATAGAG-TGGTAGGTGGGTT
*
21754335 T-GGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA-AGG
193 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATA-G
*
21754398 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCACGATTTTTG
257 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
** * * * ** *
21754463 AAACTTTTTGCGGTTTGGGATTTTTTAAAACTTTTTTGCAAGGATTTTTGGCCCTGAACATTGTT
322 AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATTGTA
*
21754528 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTTGAAGTGTACAA
387 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAA
21754593 GATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
452 GATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
21754658 CTGTAAAATCTCAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGTTAGGAGG
517 CTGTAAAATCTCAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGG
* *
21754723 CCAATATAAGGGCCAAGTACCAGCACCAATAGCACATCATGTGCGCACACCCCCCTCGGCCCCCT
582 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CGCACA-CCCCC-CGGCCCCC-
* * * * * *
21754788 TGATCGCCAAAACCTCAATTCTGTCGGTCAGGATCTCCGGCTATGCTCCGGCGATGGTGCCCCGA
643 CGATCGTCGAAACCCCAA---TGTC-G-CA-G-T-TCC-G----G---C-GAGATGGTGCCCCGG
* * *
21754853 CGAAGAAAAATGTGGCACCAACACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCTA
691 CGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-A
* *
21754918 -TCCGATCTTAGACTGGGAATGAATTCTGTATGCTTAGACTGGTAATGAACTCCGTATGCCTAAG
755 GTCCGATCTTAGACTGGGAATGAATTCTGTATGCTTAGACTGGGAGTGAACTCCGTATGCCTAAG
* * * * *
21754982 TCAAACCATGAAACGAACGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCG
820 TCAAACCATGAAACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGTAAG-CG
* * * * * * * * * * *
21755043 GCGATCAGCCGGGTCCCCCTCTGCATGCTGCCGATCTTGTTGCCGCAACCCTCGGTTTGGTC-GA
1 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGAAACACTCGGTCTGATCTG-
* * * *
21755107 ATCTTAGATTGGGAATAAACTCCGTATGCCTAAGCCAATCGACGAAACGAGTGGGCAGGCGGGCG
65 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCTGGCGGG-G
* * * * *
21755172 GGTGGGCATTACGCCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAAAGTGGTAGGTGG
125 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGAGTGGTAGGTGG
21755237 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
190 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
21755302 AGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACCACTCATTTTCTATTTTTCACGATTTT
255 AGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
* * * * * ** * *
21755367 TGAAACTTTTTGCAGTTTAAGCTTTTTTAAAATTTCTTCAGAAAGAGTGTTGGCCCCAAAC-TTG
320 TGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATT-
* * *
21755431 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTA
384 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTA
*
21755496 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
449 CAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
21755561 AACCTGTAAAATCTGAAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGATAGG
514 AACCTGTAAAATCTCAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
* *
21755626 AGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTATGCACACCCCCCGGCCCTC
579 AGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CGCACACCCCCCGGCCC-C
* * *
21755691 CCGATCGTCGGAACCCCAATG-C-C-G-TCCGGC-AG-TGGTGCCCCGGCGAAGAAAAGTGCGGG
642 CCGATCGTCGAAACCCCAATGTCGCAGTTCCGGCGAGATGGTGCCCCGGCGAAGAAAAATGCGGC
* * * * *
21755750 ACCAGCACTTGTCC-GAGCCTAGCATGTGCTGCCGTAACCCTTGGTCCGGTCCGATCTTAGACTG
707 ACCAGCACATG-CCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTG
*
21755814 GGAATGAATTCTGTATGCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTC-AACCTACGAAACG
771 GGAATGAATTCTGTATGCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAAACC-ATGAAACG
* *
21755878 AGCGTGCAGGCACTCTA-TCGGCCAGAGGGGCGGGATGTGTAAGTCG
835 AGCGTGCAGGCGCTC-AGTCGGCCAGAGGGGCGGGATGCGTAAG-CG
* *
21755924 GGGATCGGCCGGGTCCCCCTCTGCGTGCTG-TCGATCCTACTACCGAAACACTCAGTCTGATCTG
1 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCGAAACACTCGGTCTGATCTG
* *
21755988 ATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGTGCTGGCGGGTGGGCG
65 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCTGGCGGG-GGGCG
*
21756053 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTT
129 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGAGTGGTAGGTGGGTTT
* ** * *
21756118 AGGCACATCTTCATATATTTTGTGTGCCAATGCCATTTTTATGGTTTGCAAATTCATACAATAGT
194 AGGCACATCTTCATAT-TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGT
* * * *
21756183 CCTTTAAGCCATCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGA
258 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGA
* *
21756248 AACTTTTTGCGGTTCAGGATTTTTTTAATTTTTTTTGGAAGGAGTTTTGGCCCCAAAC-TTGGTA
323 AACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATT-GTA
* * * * * **
21756312 GACATGATCCTTGTATTTTTATTGGCATGCACAAAAAAACTCAGCTAAAAACTCAAAGTGTACTT
387 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAA
* * * *
21756377 GATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCA-ATCACTTTAATGTCTACTGGCAACAAA
452 GATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGGCTACTGGCAGCAAA
* *
21756441 CCTGTAAAATCT-AAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAG
516 CCTGTAAAATCTCAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAG
21756505 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-GCACACCCCGCCAGTGGCCCC
581 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCGCACACCCC-CC---GGCCCC
* * * * * * * * *
21756569 CCGATCATCGGAACCCCAGTGTCGCTGTTCAGGTTCTTCGGTGATGGTTCCTCGGTGAAGAAAAA
642 CCGATCGTCGAAACCCCAATGTCGCAGTTCCGG-----C-GAGATGGTGCCCCGGCGAAGAAAAA
* * * *
21756634 TACGGCACCAGCACATGCCTGAGCCCAACATGTGCAGCCGCAACCCTCGGTCCAGTCTGATCTTA
701 TGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTA
* * ***
21756699 GACTGGGAATGAACTCTGTATGCTTAGACTGGGAGTGAACTCCGTATGCCTAACTCGGGCCATGA
766 GACTGGGAATGAATTCTGTATGCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAAACCATGA
* *
21756764 AACGAGCGTGCAGGCGCTCAGTCGACCAGAGGGGCGGGATGCGCAAGCTG
831 AACGAGCGTGCAGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGTAAGC-G
** * * * * * *
21756814 GGGATCGGTTGGGTCCCCCTCTACGTGCTGCTGATCTTGCTACCGAAAAACTTGGTCTGGTTTGA
1 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGAAACACTCGGTCTGATCTGA
* * *
21756879 TCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCCACCGACGAAACAAGCTGGC---GGGCGGG
66 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCTGGCGGGGGGCGGG
* * * * * * *
21756941 CAATACGTCGGCCAGAGGGGCAGGATGCGTAAGTCGTGGATCGATAGAGTGGTAGGTGGGTTTAG
131 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGAGTGGTAGGTGGGTTTAG
*
21757006 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
196 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCC
* * * * *
21757071 TAAAGCCTTCACGTGAAGTTTCGTGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
261 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
* * * * * ** *
21757136 TTTTTACGGTTCGGGATTTTTTTAAA-TTTTTTGGACAGCATTTTTGGCCCTGAACATTGTTGAC
326 TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGA-AGGAGTTTTGGCCCCAAACATTGTAGAC
*
21757200 GTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACAT-GAAGTGTACAAGA
390 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAAC-TCGAAGTGTACAAGA
21757264 -TTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
454 TTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* ** *
21757328 GTAAAATCT-TAAATGCTCTTTAAGGGGGCATGAGTTCTCAACGTTTGATGAGGGATAGGAGGCC
519 GTAAAATCTCAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCC
*
21757392 AATATAAGGGCCAA-TACCAGCACGCATCGCACATCATGTGCGCACAGCCCCCCGGCCCCCCGAT
584 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT-CGCACA-CCCCCCGGCCCCCCGAT
21757456 CGTCGAAACCCCAATG
647 CGTCGAAACCCCAATG
21757472 CTGCCGGTCA
Statistics
Matches: 2132, Mismatches: 245, Indels: 119
0.85 0.10 0.05
Matches are distributed among these distances:
875 9 0.00
876 2 0.00
877 181 0.08
878 304 0.14
879 6 0.00
880 5 0.00
881 262 0.12
882 33 0.02
883 24 0.01
884 140 0.07
885 210 0.10
886 85 0.04
887 2 0.00
889 5 0.00
890 271 0.13
891 4 0.00
892 3 0.00
895 1 0.00
897 96 0.05
900 1 0.00
901 3 0.00
903 1 0.00
904 21 0.01
905 63 0.03
906 399 0.19
907 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (879 bp):
GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCGAAACACTCGGTCTGATCTGA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCTGGCGGGGGGCGGG
CACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCATGGATCGATAGAGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATTGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGAGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTCGCACACCCCCCGGCCCCCCGATCGTC
GAAACCCCAATGTCGCAGTTCCGGCGAGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACA
TGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAATT
CTGTATGCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCAGGC
GCTCAGTCGGCCAGAGGGGCGGGATGCGTAAGCG
Found at i:21756724 original size:26 final size:26
Alignment explanation
Indices: 21756695--21756747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21756685 CCAGTCTGAT
*
21756695 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21756721 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21756747 C
1 C
21756748 CTAACTCGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21758936 original size:26 final size:25
Alignment explanation
Indices: 21758899--21758950 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
21758889 TTCGTCTGAT
21758899 CTTAGATGGGAATGAACTCCGTATG
1 CTTAGATGGGAATGAACTCCGTATG
*
21758924 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGA-TGGGAATGAACTCCGTATG
21758950 C
1 C
21758951 CTATGTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 6 0.24
26 19 0.76
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (25 bp):
CTTAGATGGGAATGAACTCCGTATG
Found at i:21760276 original size:26 final size:27
Alignment explanation
Indices: 21760219--21760287 Score: 111
Period size: 27 Copynumber: 2.6 Consensus size: 27
21760209 TTTTTCATGA
* *
21760219 TTTTCAAAACTTTTTACGGTTCGAGAT
1 TTTTTAAAATTTTTTACGGTTCGAGAT
*
21760246 TTTTTAAAATTTTTTGCGGTTCGAGAT
1 TTTTTAAAATTTTTTACGGTTCGAGAT
21760273 TTTTTAAAATTTTTT
1 TTTTTAAAATTTTTT
21760288 CGGAAGGATT
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 39 1.00
ACGTcount: A:0.25, C:0.09, G:0.13, T:0.54
Consensus pattern (27 bp):
TTTTTAAAATTTTTTACGGTTCGAGAT
Found at i:21761023 original size:26 final size:26
Alignment explanation
Indices: 21760987--21761039 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21760977 CCGATCCGAT
*
21760987 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21761013 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21761039 C
1 C
21761040 GTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21764126 original size:869 final size:869
Alignment explanation
Indices: 21761013--21764756 Score: 5146
Period size: 869 Copynumber: 4.3 Consensus size: 869
21761003 ACTCTGTATG
* * * * * * * **
21761013 CTTAGACTAGGAATGAACTCCGTATGCGTAAGTCAACCCACAAAACAAGCATGTGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * ** * *
21761078 CGGCCAAAGGGGCG-GGATG-GACAAGCCGGGGATCGGTCGGGTCCTCCTCTATGTGTTGTCGAT
66 CGGCCAGAGGGGCGAGAATGCG-CAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAAT
* ** * * * *
21761141 CCTAACTGCCGCAACCCTCGGTCCTATCCGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGC
130 CCT-ACTGCCGCAACCCTCAGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
21761206 CAACCGACAAAACGAGCGGGCGAGCGGGCGGGCAGGCAGGCACTAGGCCGACCAGAGAGATGGGA
194 CAACCGACGAAACGA-------A-CGGGCGGGC--G--GGCACTACGCTGGCCAGAGAGACGGGA
* * **
21761271 TGCGCAAGTCGTGGATCGATAGGGTGGT-GGTGGGTTTAGGCACATCTTCACATTTCTATGTGCC
247 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCC
* *
21761335 AATGCCATTTTTAGGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
312 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
21761400 GCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTAG-GGTTCAGGATTTTTTAA
377 GCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTT-GCGGTTCAGGATTTTTTAA
* *
21761464 AATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGTTAGACGTGATCCTTGTATTTTTTTTGGCAT
441 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCAT
* *
21761529 GCATAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
506 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * *
21761594 CCCATTTTATACACTTTAATGGCAACTGGCA-AAATACCTGTAAAATCTCAAATGCTCTTTAAGG
571 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAA-ACCTGTAAAATCTCAAATGCTCTTTAAGG
*
21761658 GGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
635 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * *
21761723 ATTGCACATCATTTGCACACACCACCCCGGCCCCTCCGATC-ACTGGAACCCCAATGCCACCGGT
700 ATCGCACATCATGTGCGCACACC-CCCC-GCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGT
*
21761787 CAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
762 CAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
** * * * *
21761852 TTGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGATCTGAT
827 CCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGATCCGAT
* * * ** **
21761895 CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCCGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* *
21761960 CAGCCAGAGGGGC-AGAATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATC
66 CGGCCAGAGGGGCGAGAATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATC
* * * * *
21762024 CTACTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCA
* * **
21762089 ACCGAGGAAACGAGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGG
196 ACCGACGAAACGAACGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
21762154 ATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
261 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
*
21762219 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGT
326 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** *
21762284 TTTCTATTTTTAACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAATG
391 TTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
* * *
21762349 ATTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCGCAAAAAAATTCA
456 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
*
21762414 GCTAAAAACTCGAAGTGTACAAGA-TTT-TGACCATTTCAAAAAAAGTGTCCCCATTTCAGACAC
521 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GAAAAAAGTGTCCCCATTTCAGACAC
*
21762477 TTTAATGGCTACTGGCAGC-AACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGA-TTCTCG
585 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
21762540 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAAGTACCAGCACCCATCGCACATCATGTG
650 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * **
21762604 TGCACACCCCCCGGCCCCCTAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
715 CGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
* * **
21762669 TCTGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
780 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * *
21762734 TTCACAACCCTCGGTCCGGTCCGAT
845 GCCACAACCCTCGATCCGATCCGAT
* * *
21762759 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * * *
21762824 CGGCTAGAGGGGCG-GGATGCGCAATCCGGGGATCGGCCGGGTCCTCCTTTGCGTGCTGTCGATC
66 CGGCCAGAGGGGCGAGAATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATC
* ** * * * *
21762888 CTGCTATCGTAACCCTCGGTCCGATCTGATCTTACACTGGGAATGAACTCTGTATGCCTAAGCCA
131 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
21762953 ACTGACGAAATGAGCAGGTGGGCGGGCGGGTGGGCACTACG-TCGGCCAGAGAGACGGGATGCGC
196 ACCGACGAAACGA--A------CGGGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGC
* * *
21763017 AAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATCTGCATGCCAATGC
252 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* *
21763082 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCATG
317 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** * * * *
21763147 ATGACTCGTTTTCTATTTTTTAGGATTTTTGAAACTTTTTACAGTTCGGGATTTTGTAAAATTTT
382 ACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTT
* * * *
21763212 TTTGGAAGGATTTTTGGCCCCAAACTTGGAAGACGTGATCCTTGTATTTTTTTTGGCATGCATAA
447 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
21763277 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
512 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
21763342 TCAGACACTTTAATGGCTACTGGTAGCAAACCTGTCAAATCTCAAATGCTCTTTAAGGGGGTGTG
577 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
21763407 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCAC
642 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
21763472 ATCATGTGCGCACACCCCCTGACCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCTGGTTCTC
707 ATCATGTGCGCACACCCCCCG-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
21763537 CGGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATGTGCCACCAGCACATGCCCGAGCCCA
771 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
21763602 GCATGTGCTGCCACAACCCTTGATCCGATCTGAT
836 GCATGTGCTGCCACAACCCTCGATCCGATCCGAT
* * * *
21763636 CTTGGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCATGAAATGAGCGTGCGGGCT-CTCAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG-TGCTCAA
* * * * * * *
21763700 CCGGCCAGAAGGGCGAG-ATACGCAAGCCAGGAATCGATCGGGTACCCCTCTGCATGCTG-CTAA
65 CCGGCCAGAGGGGCGAGAATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTC-AA
*
21763763 TCCTACTGCTGCAACCCTCAGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGC
129 TCCTACTGCCGCAACCCTCAGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGC
** * *
21763828 CAATTGACGAAACGAACGGGCGGGCGGGCACTACGCTGGCCAAAGAGACGGGATGCGCAAGCCAT
194 CAACCGACGAAACGAACGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * * **
21763893 GGATCTACAGGTTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTATGTGCCAATGCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* *
21763958 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGGCCC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* *
21764023 GTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTC-GAGATTTTTTTAAATTTTTTCGAA
389 GTTTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGA
* *
21764087 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
21764152 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
21764217 ATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCT
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
21764281 TGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
648 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
21764346 TGCGCACACCCCCCGGCCCCCTGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
713 TGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
* * * *
21764411 GCTCCGACGATGGTGCCCCGATGAA-AAAAATGCAGCATCGGCACATGCCCGAGCCCAGCATGTG
778 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * *
21764475 CTGCCGCAAGCCTCGATCCGGTCCGAT
843 CTGCCACAACCCTCGATCCGATCCGAT
*
21764502 CTTAGACTGGGAATGAACTCCGTTTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
* * * * * *
21764567 CGGCCAGATGGGCG-GAATGTGCAGGCGGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATC
66 CGGCCAGAGGGGCGAGAATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATC
* * * * * * *
21764631 CTGCTGCCACAACCCTTAGTCCGGTCCGATCTTAGACTGGGAATAAACTTCGTATGCCTAAGCCA
131 CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCA
*
21764696 ACCGACGAAACG-A---GCAGGACGGGCACTACG-TCGGCCAGAGAGACGGGATGCGCAAGCCGT
196 ACCGACGAAACGAACGGGC-GGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGT
21764756 G
259 G
21764757 TGTCATGAGC
Statistics
Matches: 2560, Mismatches: 269, Indels: 85
0.88 0.09 0.03
Matches are distributed among these distances:
862 3 0.00
863 40 0.02
864 304 0.12
865 8 0.00
866 264 0.10
867 107 0.04
868 135 0.05
869 478 0.19
870 249 0.10
871 1 0.00
872 311 0.12
873 55 0.02
874 45 0.02
875 40 0.02
876 41 0.02
877 297 0.12
878 2 0.00
881 68 0.03
882 111 0.04
883 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (869 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAAC
CGGCCAGAGGGGCGAGAATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCAATC
CTACTGCCGCAACCCTCAGTCCGGTCTGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAACGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATAATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT
CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCACAACCCTCGATCCGATCCGAT
Found at i:21771042 original size:26 final size:26
Alignment explanation
Indices: 21771013--21771063 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21771003 TGGTCTGATC
*
21771013 TTAGACTGGGAATGAACTCTGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
*
21771039 TTAGATTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
21771064 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:21775494 original size:26 final size:26
Alignment explanation
Indices: 21775458--21775510 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21775448 GTTGACTTAG
21775458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
21775484 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21775510 G
1 G
21775511 ATCGGACGGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21777076 original size:26 final size:26
Alignment explanation
Indices: 21777047--21777097 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21777037 GTTGACTCAG
* *
21777047 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
21777073 GCATACAGAGTTGATTCCCAATCTA
1 GCATACAGAGTTCATTCCCAATCTA
21777098 CCAAGTTTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:21777632 original size:26 final size:26
Alignment explanation
Indices: 21777596--21777646 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
21777586 GTTGACTCAG
21777596 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21777622 GCATACGGAGTTCATTCCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
21777647 TGATCGGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21778522 original size:26 final size:26
Alignment explanation
Indices: 21778492--21778544 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21778482 GTTGACTTAG
*
21778492 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21778518 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21778544 G
1 G
21778545 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21781158 original size:26 final size:26
Alignment explanation
Indices: 21781129--21781182 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
21781119 GGGTTGACTT
*
21781129 AGCATACGGAGTTCATTCCCAGTCTA
1 AGCATACGCAGTTCATTCCCAGTCTA
21781155 AGCATACGCAGTTCATTCCCAGTCTA
1 AGCATACGCAGTTCATTCCCAGTCTA
21781181 AG
1 AG
21781183 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
AGCATACGCAGTTCATTCCCAGTCTA
Found at i:21785258 original size:713 final size:711
Alignment explanation
Indices: 21783820--21785790 Score: 2943
Period size: 713 Copynumber: 2.8 Consensus size: 711
21783810 ATTTTATAGG
* * * *
21783820 TTTTACAGGTTTGATGCTACTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCGAATGGTC
1 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTC
* *
21783885 ACAAAATCTTGTACACTTTGAGTTTTTAGTTGATTTTTTTTGTGCATGCCAATAAAAATACAAGG
66 ACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGG
* * **
21783950 ATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAGAATTTTGAAAAATCCTGAAAAGTA
131 ATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTA
* *
21784015 AAAAGTTTTGAAAATCGTGAAAAATA-AAGAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGG
196 AAAAGTTTTCAAAATCGTGAAAAATAGAA-AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
21784079 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCTCGTAGAAATATCAAGA
260 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATAAAGA
* * *
21784144 TATGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGAATCCCGTCTCTCTGGCC-AGC
325 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-C
* *
21784208 GTAGTGCCCACCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
389 GTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAG
* * * * * * *
21784273 TCT-AGAATCGGACCGGACCGAGGGTTGCGGTACCACATGCTGGGCTCAGGCATGTGCTGGTGCC
454 TCTAAG-AT-AGAACAGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
* ** * * *
21784337 GCATTTTTCTTCGTCGAGGAACCATCGCCAGAGCATCGTCAGAGAACCTGACCGACGGCATTGGG
517 GTATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCAGAGAACCTGACCGACGGCATTAGG
* * * *
21784402 GTTCAGGCGATCAGGGGGCGGGGGGTGTGCGCGCATGATGTGTGATGGGTACTTGTACGTGGCCC
582 GTTCAGACGATCAGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACGTGGCCC
*
21784467 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAGA
647 TTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
21784532 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTC
1 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTC
* *
21784597 ACAAAATCTTGCACACTTCGAGTTTTTAATTGATTTTTTTTGTGCATGCCAAAAAAAAATACAAG
66 ACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTGTGCATGCC-AAAAAAAATACAAG
*
21784662 GATCATGTCTACCAAGTTTGGGGCCAAAACACCTTCCGAAAAAATTTTAAAAAATCCTGAACCGT
130 GATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGT
*
21784727 AAAAAG-TTTCAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
195 AAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
21784791 CTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATAAAGA
260 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATAAAGA
* * *
21784856 TGCGCC-AAACCCACCTACCACACTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGACG
325 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* * *
21784920 TAGTGCCCGCCCGCCCGCCCGCTCATTTCGCCGGTTGGCTTAGGCATACGGAGTTCATTCTTAGT
390 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGT
* * * *
21784985 CTAAGATTGAACTAGACCGAGGGTTACGATAGCACATGCTGGGCTTGGGCATGTGTTGGTGCCAT
455 CTAAGATAGAAC-AGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGT
* * * *
21785050 ATTTTTCTTCACCGGGGCAGCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTAGGGT
519 ATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCAGAGAACCTGACCGACGGCATTAGGGT
* * * *
21785115 TCCA-ACGATCGGGGGGGCCGGGGGGTGTGCTCACATGATGTGCGATGGGTGCTGGTACTTGGCC
584 T-CAGACGATC-AGGGGG-CGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACGTGGCC
* *
21785179 CTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
646 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
21785244 A
711 A
* *
21785245 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATTG-C
1 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTC
* * * * * *
21785309 TACAAAATCTTGTACACTTCGAGTTTTTAGCTAATTTGTTTTCTGCATGCCAACAAAAATACATG
66 -ACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTGTGCATGCCAAAAAAAATACAAG
* * *
21785374 GATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTACCGAAAAAATTTTAAAAAATCCCGAACCGT
130 GATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGT
*
21785439 AAAAAGTTTTCAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
195 AAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * *
21785504 CTTAAAGGACCATTGTATAAATTTACAAGCCATAAAAATGGCATTGGCA-AGTAGAAATATGAAG
260 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACA-TAGAAATATAAAG
*
21785568 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATTCCGTCTCTCTGGCCGAC
324 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * *
21785633 GTAGTGCCCGCCCGCCAGCCCACCCGTTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
389 GTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * *
21785698 CCAATCTAAGATCAGATCAGACTGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCT-GT
450 CTAGTCTAAGAT-AGAACAGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGT
*
21785762 GCCGTATTTTTCTTCACCAGGGCACCATC
514 GCCGTATTTTTCTTCACCGGGGCACCATC
21785791 ACCGGACGGC
Statistics
Matches: 1138, Mismatches: 104, Indels: 29
0.90 0.08 0.02
Matches are distributed among these distances:
710 3 0.00
711 221 0.19
712 315 0.28
713 408 0.36
714 64 0.06
716 1 0.00
717 30 0.03
718 93 0.08
719 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (711 bp):
TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCGAATGGTC
ACAAAATCTTGTACACTTCGAGTTTTTAGTTGATTTTTTTTGTGCATGCCAAAAAAAATACAAGG
ATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGTA
AAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATAAAGAT
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTC
TAAGATAGAACAGACCGAGGGTTACGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTAT
TTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCAGAGAACCTGACCGACGGCATTAGGGTTC
AGACGATCAGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTACTGGTACGTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGA
Found at i:21786273 original size:26 final size:26
Alignment explanation
Indices: 21786236--21786288 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21786226 GTTGACTTAG
*
21786236 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21786262 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21786288 G
1 G
21786289 ATCGAATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21786840 original size:26 final size:26
Alignment explanation
Indices: 21786811--21786863 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21786801 GTTGACTTAG
*
21786811 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21786837 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21786863 G
1 G
21786864 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21788203 original size:904 final size:898
Alignment explanation
Indices: 21786354--21789760 Score: 4780
Period size: 903 Copynumber: 3.8 Consensus size: 898
21786344 GTCACATTTT
* * *
21786354 TCACG-CTACTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAATCTTGAACCGCA
1 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTT-AAAAAATC-TGAACCGTA
* *
21786418 AAAAGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTACACGTGAAGGC
64 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
21786483 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGCT
129 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
*
21786548 GTGCCTAAACCCACCTACCACCCAATCGATCCACGGCTTGCGCATCCCGTCTCTCTCGGCCGACG
194 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GGCCGACG
* * * * *
21786613 TAGTG-C-CCG---TC-CGCCTGCTCGTTTGGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTA
258 TAGTGCCGCCGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTA
* * * * * * *
21786672 GTCTAAGATCAGACCAGACTGGGGGTTGCAGTAGTAGGATCGGCAGCACACAGAGGGGGACTCAG
323 GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGACAGCACACAGAGGAGGACCCGG
* *
21786737 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCGTGGG
388 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* *
21786802 TTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATT
453 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * *
21786867 GGACCAGACTGAGGGTTGCAGTAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
518 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
21786932 TCG-CTGAGGCACCATCGCTGGAGCATCGCCAGAGAACCTGATCGGGGGCATTAGGGTTCCGTCG
583 TCGTC-GGGGCACCATCGC-GGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
21786996 ATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC-AATGGGTGCTGGTACTTGGCCCTTATA
646 ATC-GGGGGG-CGGGGGGGTGTGCGCACATGATGTGCGAA-GGGTGCTGGTACTTGGCCCTTATA
* *
21787060 TTGGCCCCCTATCCCTCATCAAAGCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTA
708 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
21787125 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAA
773 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
21787190 ATGTTGTACACTTCGAGTTTTTTGCTGAATATTTTTGTGCATGCCAATAAAAATACAAAGA
838 ATCTTGTACACTTCGAGTTTTTAGCTAAATATTTTTGTGCATGCCAAAAAAAATACAAGGA
* * * *
21787251 TCACATCTACCAAGTTTGGGGCCAAAACGCCTTTTGAAAAAATTTAAAAAAATTCTGAACCGTAA
1 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAA-TCTGAACCGTAA
* *
21787316 AAAGTTTCAAAAATTATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
65 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * ***
21787381 TAAGGGACAATTTTTTGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATG
130 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * * * * * * *
21787446 TGCCTAAACCCACCTACCACCCTATCAATCAATGGCATGCGCATCTCGTCTCTTTGGCTGGCATA
195 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
21787511 GTGCTCGCACGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTA
260 GTGC-CGC-CGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTA
* * *
21787576 GTCTATGGTCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGATAGCACACAGAGGAGGACCCGG
323 GTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGACAGCACACAGAGGAGGACCCGG
* * * * *
21787641 TCGATCCCCGGCTTGCACATGCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCATTTCATGGG
388 CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGG
* * *
21787706 TTGACTTAGGCATACGGAGTTCATTTCCTGTCTAAGCATACGGAGTTCATTCCCAGTCGAAGATC
453 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
21787771 GGATCGGACTGAGGGTTACGGTAGCACATGCTGGGCTCGGTCATGTGCTGGTGTCGTATTTTTCT
518 GGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
21787836 TCGTCGGGGCACCATCGCAGGAGCATCGCCAGAGAACCTGACCAGCGGCATTTGAGTTTCGATGA
583 TCGTCGGGGCACCATCGC-GGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * *
21787901 TCGGGGGGGCTGGGGGGTGGGCGCACATGATGAGCGAAGGGTGCTGGTACTTGGCCCTTATATTG
647 TC-GGGGGGCGGGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTG
* *
21787966 GCCCCTTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAG
711 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* **
21788031 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTTGAATGGTCACAAAATC
776 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* *
21788096 TTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCAACAAAAATACAAGGA
841 TTGTACACTTCGAGTTTTTAGCTAAATATTTTTGTGCATGCCAAAAAAAATACAAGGA
21788154 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTCGAACCGTAA
1 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCT-GAACCGTAA
* *
21788219 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAGCTTCACGTGAAGGCT
65 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
21788284 TAAGGGACCATTGTATGAATTTACACGCCATAAAAATGGCATTGGCATGCAGAAATATAAAGATG
130 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
*
21788349 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGACGTA
195 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA
* * * *
21788414 GTGCCTGCCTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTAATTCCTA
260 GTGCC-GCC-GCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTA
** * ** ** *
21788479 GTCTAAGATTGGACCAGATCGAGGGTTGCGGCT-GTAGGATCGGTAGCACGTAGAGAAGGACCCG
323 GTCTAAGATCAGACCAGACCGAGGGTTGCGG-TAGTAGGATCGACAGCACACAGAGGAGGACCCG
* * * * *
21788543 GCC-AACCCCTGGCTTGCCCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCATGCTCGTTTCGTG
387 GCCGATCCCC-GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
* * *
21788607 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTATAATCATACGGAGTTCATTCTCAGTCTAAGA
451 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * *
21788672 TCGGATCTGACCGAGGGTTGCGGCAACACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
516 TCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * *
21788737 CTTCGTCGGGGCACCATCATCGGAGTATCGCTAGAGAACCTGACCGACGGCATTGGGGTTCCGAC
581 CTTCGTCGGGGCACCATC-GCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGAC
* * *
21788802 GATCGGGGGGCGGGGGAGGTGTGTGCACATGATGTGCGATGGGTGCTGGTACTTGGCACTTATAT
645 GATCGGGGGGCGGGGG-GGTGTGCGCACATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATAT
* * *
21788867 TGGCCCCCTATCCCTTATCAAACCTTGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTAC
709 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
21788932 AGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
774 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * * * *
21788997 TCTTGTACACTTCGAGCTTCTAGCTTATTTTTTTTGTACAAGCCAAAAAAAATACAAGGA
839 TCTTGTACACTTCGAGTTTTTAGCTAAATATTTTTGTGCATGCCAAAAAAAATACAAGGA
* * *
21789057 TCACGTCCACCAAGTTTGGGGCCAAAAATCCTTACGAAAAAATTTTAAAAAATCTGAACCGTAAA
1 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTGAACCGTAAA
* * ***
21789122 AATTTTCAAAAATCATGAAAAATAGAAAACGAATCGTCTTGCCGCAAAACTTCACGTGAAGGCTT
66 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
** * *
21789187 AAAAGACCATTGTATGAATTTACAAGCCATATAAATGGCATTGGCATGTAGAAATATGAAGATGT
131 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
* * * *
21789252 GCCTAAACCCACCGACCACCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTAGTCGACGTAG
196 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * * * *
21789317 TGCCCACCCACCCG-TCCACCCGCTCATTGT-ATCGGTTGGCTTAGGCATACAGAGTTCATTCCC
261 TG-CC-GCCGCCCGCT-CGCCCGCTCATT-TCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCT
* * * *
21789380 AGTCTAAGATCAGACCAGATCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGGACCCG
322 AGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGACAGCACACAGAGGAGGACCCG
* * * * * * *
21789445 ACCGATCCCTGACTTGCGCATACCGCCCCTCTGGCCGGTTGAGCTCCCGCACGCTCTTTTCATGG
387 GCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGG
* *
21789510 GTTGACTTTGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
452 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGAT
* *
21789575 CGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTC
517 CGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC
* * * *
21789640 TTCGTCGGGGCA--ATCGTCGGAGTATCGCCAGAAAACCTGACTGGCGGTATTGGGGTTCCGACG
582 TTCGTCGGGGCACCATCG-CGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * * *
21789703 ATCGGGGGGC---GGGGTGTGCGTACATGTTGTGCGATGGGTGCTGGTACTTTGACCCTTA
646 ATCGGGGGGCGGGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTAC-TTGGCCCTTA
21789761 AAGAGCATTT
Statistics
Matches: 2228, Mismatches: 256, Indels: 52
0.88 0.10 0.02
Matches are distributed among these distances:
896 42 0.02
897 196 0.09
898 38 0.02
899 1 0.00
900 56 0.03
902 488 0.22
903 1064 0.48
904 342 0.15
905 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (898 bp):
TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCTGAACCGTAAA
AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
TGCCGCCGCCCGCTCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTC
TAAGATCAGACCAGACCGAGGGTTGCGGTAGTAGGATCGACAGCACACAGAGGAGGACCCGGCCG
ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTG
ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
CCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
TCGGGGCACCATCGCGGAGCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
GGGGCGGGGGGGTGTGCGCACATGATGTGCGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTAAATATTTTTGTGCATGCCAAAAAAAATACAAGGA
Found at i:21789556 original size:26 final size:26
Alignment explanation
Indices: 21789520--21789572 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21789510 GTTGACTTTG
*
21789520 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21789546 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21789572 G
1 G
21789573 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21791281 original size:25 final size:26
Alignment explanation
Indices: 21791246--21791295 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
21791236 TTGACTTAGG
21791246 CATACGGAGTTCATTCCCAGTCTAAC
1 CATACGGAGTTCATTCCCAGTCTAAC
21791272 CATA-GGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
21791296 GATTGGACCA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAC
Found at i:21793019 original size:26 final size:26
Alignment explanation
Indices: 21792983--21793035 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21792973 GTTGACTTAG
21792983 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21793009 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21793035 G
1 G
21793036 ATCGAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21794155 original size:878 final size:880
Alignment explanation
Indices: 21789755--21796381 Score: 7686
Period size: 900 Copynumber: 7.6 Consensus size: 880
21789745 GGTACTTTGA
* * *
21789755 CCCTTAAAGAGCATTTGAGATTTTACAGGTATACTGCCAGTAGCCATTAAAGTGTCTAAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
21789820 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATTTTTTTGTGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
21789885 ATGCCAA-AACAAATAAAAGGATCATGTTTACCAAGCTTGGGGCCAAAACTCCTTCCGAAAAAAT
131 ATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAAT
* ** * * *
21789949 TTTAAAAAATCTCGAACAACAAAAATTTTCAAAAATCATGAAAAGTAGAAAATGAGTCGTCTTGC
194 TTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
21790014 CATGAACCTCCACGTGAAGGCTTAAGGGACCACTGTTTGAATTTACAAGCCATAAAAATGGCATT
259 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
21790079 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
324 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
** *
21790144 TCCCGTCTCTCTATCCGACGTAGTGCCCGCTCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
389 TCCCGTCTCTCTGGCCGACGTAGTGCCCGC-CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
21790209 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGATCGAGGGTTACAGCCGCAGGATCGGCA
453 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCA
* * * * *
21790274 GCACGCAGAGGGGGACCCTACCGATCCCCGACTTGCGCATCCTGCCCCTCTAG-ACGGCTGAACG
518 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCA-GGCTGAGCG
* *
21790338 GCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-T-C-TA-AG-AT-
582 CCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCTACATAGAGTATC
* * *
21790397 C-G-GACCAGACCGAAGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCGGGTGCCACATTTT
647 CAGAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTT
* * *
21790460 TCTTCACCGGGGCACCATC-ATCGGAGCATCACCGAAGAACCTGACCGACGGCTTTGGGGTTTCG
712 TCTTCACCGGGGCACCATCGA-CGGAGCATC-CCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * * *
21790524 ACGATCGGGGGGGCGAGAGGGTGTGCGCACATGATGTGTGAAGGGTGCTGGTACTTGACCCTTAT
775 ACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * * *
21790589 ATTGGCCCCCTATCTCTCATTAAACCTCGAGAAGTCACTCC
840 ATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACC
*
21790630 CCCTTAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
21790695 GACACTTTTTTCAAATGGTCACAAAATCTTGCACACATCGAGTTTTTAGCTGAATTTTTTTGTGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * *
21790760 ATGCCAATAAAAATACAAGGATCACGACTACCAAGTTTGGGGCCAAAAATCCTTTGGAAAAAATT
131 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCGAAAAAATT
* * * * ** *
21790825 TTAAAAAATC-CTGAGCCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTAATCTTTC
195 TTAAAAAATCTC-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * * *
21790889 CATGAAACTTCATGTGAAGACTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCATT
259 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
21790954 GGCAAGCAAAAATTTGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
324 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* *
21791019 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGTCCGCTCGCCCGCTCGTTTCGTCGGTTGGCCT
389 TCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * * *
21791084 AGGCATATGGAGTTCATTCCCAGTTTAAGATCAGACCGAACAGAGGGTTGCGGCAGTAAGATCGG
451 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGG
* * * *
21791149 CAGCACGCAGAGGTGGACCCGACCGATCCCCGGCTTGCGCATCCCGTCGCTCTGGTC-GACTGAG
516 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG-CAGGCTGAG
*
21791213 CGCTCGCACGCTCGTTTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAACCATAG
580 CGCCCGCACGCTC-TTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-CT-A-CATA-
** *
21791277 GAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCGGTGGCACATGTTGGGCTCGGGC
640 GAG-T-A-T-CCAG----AGA-T----CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** * * *
21791342 ATGTGCTGGTGCCGCA-TTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGTCGGAGAACCTGAC
692 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGACGGAGCATC-CCGGAGAACCTGAC
* * * * * *
21791406 TGGCGGCATTAGGGTTCCGGCGATCGGGGGGGCGGAGGGGCGGTGTACGCACATGATGTGCGATG
756 CGACGGCATTGGGGTTCCGACGATCGGGGGGGC-CA-GGG-GGTGTGCGCACATGATGTGCGATG
21791471 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACC
818 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACC
*
21791534 TCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
21791599 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCT-AATTTTTTTTGTG
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTG
*
21791663 CATGCCAACAAAAATACAAGGATCCCGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAAT
130 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCG-AAAAAAT
* * * * * * *
21791728 TTAAAAAAATCTCAAATCGCAAAAGGCTTTCCAAAATCGTCAAAAATAGAAAACGAGTCGTCTTA
194 TTTAAAAAATCTCAAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
21791793 CCATGAAACTCCACGTGAAGGCTTAA--G------G---G--------A--C----------CAT
258 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
21791827 T-G--T---GAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGCGC
323 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * *
21791886 ATCCCGTCACTCTGGCCGGCGT-CTCGCCAG-CCCGTCTGCCCGCTCATTTCGTCGGTTGGCTTA
388 ATCCCGTCTCTCTGGCCGACGTAGT-GCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
21791949 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCAAGGGTTGCGGCAGCAGGATCGAC
452 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGC
* * * * * * * *
21792014 AGCACGCAGAGGGGGACCTGGCCGATCCCTGGCTTGCGCATCCCGCCCCTTTGTCCGACTGAACG
517 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCG
* *
21792079 CCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-T-CA-A-AG-AT-
582 CCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCTACATAGAGTATC
* * * *
21792138 C-G-GACCAGACCGAGGGTTACGACAGCACATGCTGGGCTAGGGCATGTGCTGGTGCCACATTTT
647 CAGAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTT
* ** * * *
21792201 TCTTCATCAAGGCACCATCGACGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGATTCTGG
712 TCTTCACCGGGGCACCATCGACGGAGCATC-CCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
* * * * * * *
21792266 CGACCGGAGGTGCCGGGGGGGTGTGTGCATATGATGTGCGATGGGTGCTGGTACATGGCCCTTAT
776 CGATCGGGGGGGCC-AGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
21792331 ATTGGCCCCCTATCGCTCATCAAACCTTGAGAACTCACACC
840 ATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACC
*
21792372 CCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
21792437 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * * **
21792502 ATACCAAGAAAAATACAAGGATCACGTCTACTAAGTTTGGGGTCAAAAATTTTTTCGAAAAAATT
131 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG-CCAAAACTCCTTCGAAAAAATT
* * *
21792567 TTAAAAAATCCCAAACCGCAAAAAGATTT-GAAAATCCTGAAAAATAGAAAACGAGTCGTCTTGC
195 TTAAAAAATCTCAAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
21792631 CATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATT
259 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
21792696 GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCA
324 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * ** * * *
21792761 GCCCATCTCTCTGGCCGGTGTAATGCCCGCCCC-CCCGCCCGCTCGTTTCATCGATTGGCTTAGG
389 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* ** * *
21792825 CATACGGAGTTCATTCCCAATCTAAGATTGGATCAGACTGAGGGTTGCGGCAGCAGGATCGGCAG
454 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAG
* * * *
21792890 CACACAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCATCTGGCTGGCTGAGCGCC
519 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCC
21792955 CGCACGCTCGTTTT-GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAG
584 CGCACGCTC-TTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-CT-A-CATA--GAG
*
21793019 TTCATTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGCGGCAGCACATGTTGGGCTCGGGCATG
643 -T-A-T-CCAG----AGATC--A---GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* ** * * *
21793084 TGCTGGGGCCACATTTTTCTTCGTCGGGGTACCATCGACGGAGCATCGTCGGAGAAGCTGACCGA
695 TGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGACGGAGCATC-CCGGAGAACCTGACCGA
* * *
21793149 CGGTATTGGGGTT-CTAGCGATCGGGGGTGCC-GGGGTGTGTGCGCACATGATGTGCGATGGGTG
759 CGGCATTGGGGTTCCGA-CGATCGGGGGGGCCAGGGG-GTGTGCGCACATGATGTGCGATGGGTG
21793212 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACC
822 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACC
*
21793271 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
21793336 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTTTGTGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
21793401 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAAATT
131 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCG-AAAAAATT
* * * * *
21793466 TTAAAAAATCTCAAATCGCAAAAAGCTTTCCAAAATCGTGAAAAATGGAAAACGAGTCGTCTTAC
195 TTAAAAAATCTCAAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* *
21793531 CATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATC
259 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
21793596 AGAATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
324 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
21793661 TCCCGTCCCTATGGCCGATGTAATGCCCGACCGCCTGCCCGCCCGCTTGTTTCGTCGGTTGACTT
389 TCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
21793726 AGGCATAAGGAGTTCATTCCAAGTCTAAGATCAGATCAGACCGAGGGTTGTGGCAACAGGATCAG
451 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGG
* ** *
21793791 CAGCAGGCAGAGGGGGACCCGGTCGATCCCCGCCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGC
516 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGC
* * *
21793856 GCCCGTAAGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAG-T-C-TA-AG-AT
581 GCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCTACATAGAGTAT
* * * *
21793916 -C-G-GATCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTT
646 CCAGAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTT
* * *
21793978 TTCTTCACCGGGACACCATCGTCGGAGCATCCTCAGAGAACCTGACCGACGGCATTGGGGTTCCG
711 TTCTTCACCGGGGCACCATCGACGGAGCATCC-CGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * * * * * *
21794043 ATGAACGAGGGGGCCAGGTGGTCTACGCAGATGATATGCGATGGGTGCTGGTACTTGGCCCTTAT
775 ACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
21794108 ATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACC
840 ATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACC
21794149 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
21794214 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCTAGTTTTTAGCTGAATTTTTTTGTGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
21794279 ATGCCAAAAAAAATACAAGGATCACGTGTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATT
131 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATT
* * *
21794344 TTAAAAAATCCCAAGCCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCC
195 TTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
21794409 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
260 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
21794474 GCACGCATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTGTCGATCCACGGCTTGTGCAT
325 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
** ** * * * * *
21794539 CTTGTCTCTCCAGTCGGCGTAGTGCCCG-CCCGCCTGCCCACTCGTTTCGTCGGTTGCCTTAGGC
390 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * ** *
21794603 ATACGGAGTTCATTCCCAGTCTAAAATCAGACCGGATCGAGGGTTGCGGTAATAGGATCGGTAGC
455 ATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGC
* * * *
21794668 ATGCAGAGGGGGACCC-AGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGCACC
520 ACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCC
* * *
21794732 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGT
584 CGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-CT-A-CATA--GAG-
* *
21794797 TCATACCCAGTCTAAGATCGGACCGGACCAAGGGTTGCGGCAGCACATGCTGGCCTCGGGCATGT
643 T-AT--CCAG----AGATC--A---GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* ** * * * * *
21794862 GCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CATGGCCGAAGTATTGCCGGAGAACCTGACCGAC
696 GCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGACGGAGCA-TCCCGGAGAACCTGACCGAC
* * *
21794926 GGTATTGGGGTTCCAACGATCGGGGGGGCCGGAGGGGGTGTGCGCACATGATGTGTGATGGGTGC
760 GGCATTGGGGTTCCGACGATCGGGGGGGCC--AGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* ** *
21794991 TGGTACTTGTCCCTTATATTGGTGCCTTATCCCTCA-GTAAACCTCGAGAACTCACACC
823 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATG-AAACCTCGAGAACTCACACC
21795049 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
21795114 GACACTTTTTTCGAATGGTCATAAAATCTTGTATACTTTGAGTTTTTAGCTGAATTTTTTTGTGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
21795179 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAATTCCTTCCGAAAAAATT
131 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATT
* * * *
21795243 TTAAAAAATC-CTGAACCACAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCCTCTTGC
195 TTAAAAAATCTC-AAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
21795307 CATGAAACTTCACGTGAAGGCTTAA--G------G---G--------A--C----------CA-T
259 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
21795340 ----T---G---TATGAAGATGTGCCTAAACCCACCTACCACGCTGTCGATCCACGGCTTGCGCA
324 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * *
21795395 TCCTGTCTCTCTGGCCGACGTAGTG-----CCCGCCCGCTCGCTCGTTTTGTCGATTGGCTTAGG
389 TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * ** * * * * **
21795455 CATAGGGACTTCATTCCTAGTCTAAGATCA-AACCAAACTAGGGAATGCGGCAGTAGGATCGATA
454 CATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGG-TTGCGGCAGCAGGATCGGCA
* * ** * * *
21795519 GAATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCACTCTGGCCGGGTGAGCGC
518 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGC
* * * * * *
21795584 CCGTACGCTCGTTTCATGGGTTGACTTTGGCATATGGAGTTCTTTCCCAGTCTAAGCATACGGAG
583 CCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG-CT-A-CATA--GAG
* * * *
21795649 TTCATTGCTAGTCTAAGATCGGATCTGACCGAGGGTTGCGACAGCACAAGCTGGGCTCGGGTATG
643 -T-A-T-C----C--AGA---GATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* * * * * *
21795714 TGCTGGTGCCACGTTTTTCGTCATCGGAGCACCATC-ATCAGAGCAACGCCGGAGAACCTGACCG
695 TGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGA-CGGAGCATC-CCGGAGAACCTGACCG
* * *
21795778 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGAACATGATGTGCGATGGGTGT
758 ACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
21795843 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
823 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCGAGAACTCACACC
* *
21795901 CCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAA------G---T---
1 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
*
21795954 G--------------T-GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGC
66 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * *
21796004 ATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAGTT
131 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-CGAAAAAATT
* * * *
21796069 TTAAAAAATCTCGAACAGTAAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
195 TTAAAAAATCTCAAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
* * *
21796133 CATGCAACTTCACGTGAAGTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATT
259 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
*
21796198 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
324 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
21796263 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCACCCGTTCGTTCCATCGGCTG
389 TCCCGTCTCTCTGGCCGACGTAGTGCCCG--C-CCCG----CCCGCCCGCTCGTTTCGTCGGTTG
* * *
21796328 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTG
447 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTG
21796382 TGGTAGCACA
Statistics
Matches: 4955, Mismatches: 563, Indels: 463
0.83 0.09 0.08
Matches are distributed among these distances:
825 87 0.02
826 93 0.02
827 5 0.00
828 1 0.00
834 1 0.00
837 55 0.01
838 273 0.06
839 63 0.01
840 67 0.01
843 1 0.00
844 2 0.00
845 2 0.00
846 1 0.00
847 1 0.00
848 1 0.00
849 1 0.00
850 1 0.00
852 139 0.03
853 254 0.05
854 54 0.01
855 1 0.00
856 3 0.00
857 73 0.01
858 7 0.00
859 4 0.00
862 2 0.00
863 4 0.00
864 179 0.04
866 1 0.00
867 2 0.00
868 157 0.03
869 1 0.00
873 185 0.04
874 264 0.05
875 382 0.08
876 10 0.00
877 356 0.07
878 407 0.08
879 12 0.00
880 53 0.01
881 7 0.00
882 3 0.00
883 8 0.00
884 1 0.00
885 4 0.00
886 2 0.00
887 1 0.00
888 4 0.00
889 4 0.00
890 1 0.00
891 3 0.00
892 2 0.00
894 5 0.00
895 5 0.00
897 5 0.00
898 67 0.01
899 445 0.09
900 537 0.11
901 69 0.01
902 53 0.01
903 12 0.00
904 456 0.09
905 56 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (880 bp):
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCGAAAAAATTT
TAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
CCGTCTCTCTGGCCGACGTAGTGCCCGCCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCA
TACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCA
CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCAGGCTGAGCGCCCG
CACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGCTACATAGAGTATCCAGA
GATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTT
CACCGGGGCACCATCGACGGAGCATCCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
GGGGGGGCCAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
CCCCTATCCCTCATGAAACCTCGAGAACTCACACC
Found at i:21794790 original size:26 final size:26
Alignment explanation
Indices: 21794760--21794812 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21794750 GTTGACTTAG
*
21794760 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
**
21794786 GCATATGGAGTTCATACCCAGTCTAA
1 GCATACAGAGTTCATACCCAGTCTAA
21794812 G
1 G
21794813 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATACCCAGTCTAA
Found at i:21795649 original size:26 final size:26
Alignment explanation
Indices: 21795613--21795665 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21795603 GTTGACTTTG
* *
21795613 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
21795639 GCATACGGAGTTCATTGCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21795665 G
1 G
21795666 ATCGGATCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.21, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21798085 original size:709 final size:704
Alignment explanation
Indices: 21795956--21798501 Score: 3359
Period size: 693 Copynumber: 3.6 Consensus size: 704
21795946 ATTAAAGTGT
*
21795956 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGTGCATGCCAAAAAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * *
21796021 AGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAGTTTTAAAAAATCTCGAACA
66 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACC
* *
21796086 GTAAAAAGTTTTCAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGCAACTTCACGTGAA
130 GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* * ** *
21796151 GTCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGTATTGGCATGCAAAAATATGAA
195 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
21796216 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
260 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* * * *
21796281 CGTAGTGCCCGCCCGCCCGCCCACCCACCCG-TTCGTTCCATCGGCTGGCTTAGGCATACGGAGT
325 C-CAGTGCCCACCCGCCCG-CCACCCGCCCGTTTCG-TCGAT----TGGCTTAGGCATACGGAGT
** * * * * * *
21796345 TCATTCCCAGTCTAAGATCGGACCGGACCGAAGGTTGTGGTAGCACATGCTGGGCTCGAGCATGT
383 TCATTCCCAGTCTAAGATCAAACTGGACCTAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGT
* * *
21796410 GCTGGTGCCGCATTTTTCTTCGTCGAGGTACCATCGCCGGAGCATCACCGGAGAACCTGACCGGC
448 GCTGGTG-CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCAT--CCGGAGAACTTGACCGGC
* * * *
21796475 GGCATTGGAGTTCTA-ACGATCGGGGGGGGGCGGGGGGTGTGCGCACATGATGTGCGTTGGGTCC
510 GGCATTGG-GTTCGAGGCGATC--------G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
21796539 TGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCACA-CCCCTTAA
565 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
21796603 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTT
630 AGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
21796668 TTTTCAAATG
695 TTTTCAAATG
* ** *
21796678 GTCACAAAATCTTGTACACTTCAAGTTTTTAGCAAAATTTTTTTGTGCATGCCAAGAAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * *
21796743 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAGATTTTAAAAAATCCTGAACT
66 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-GAACC
* ** * *
21796808 GCAAAAAGTTTCAAAAATCGTGAAAATTAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAA
130 GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
21796873 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACATAGAAATATGAA
195 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
* * *
21796938 GATGTGACTAAACCC-CCT-CTCACCCTATCGATCCGCGGCTTGCGCATTCCGTCTCTCTGGCCG
260 GATGTGCCTAAACCCACCTAC-CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * * *
21797001 G-CA-T----A---G--TGCCGCCCGCTCGTTTCGTCGATTAGCTTAGGCGTATGGAGTTCATTC
324 GCCAGTGCCCACCCGCCCGCCACCCGCCCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTC
* * * *
21797055 CCAGTCCAAGATCGAACTGG-GCTGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGG
389 CCAGTCTAAGATCAAACTGGACCT-AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGG
21797119 TGCTGCATTTTTCTTCGTCGGGGCACCAT---C----C--CCGGAGAACTTGACCGGCGGCATTG
453 TGC-GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCGGAGAACTTGACCGGCGGCATT-
* * *
21797175 GGGTTCCGACGATCGGGGAGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
516 GGGTT----CGA--GGCGA-TCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
* *
21797240 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTCAAAGAACATTT
574 GCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTT
*
21797305 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAAAT
639 GAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAAT
21797370 G
704 G
* * *
21797371 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTGTGCATGACAACAAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * *
21797436 AGGATCACGTCTACCAAGTTTGGGGCCAGAACTCTTTCCGAAAAAATTTTAAAAAATCTCAAACC
66 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACC
* * *
21797501 GTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCATGTGAA
130 GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
21797566 GGCTTAAGGG-CCATTGTATTAATTTACAA-CCTATAAAAATGGCATTGGCACGCAGAAATATGA
195 GGCTTAAGGGACCATTGTATGAATTTACAAGCC-ATAAAAATGGCATTGGCACACAGAAATATGA
* * * *
21797629 AGATGTGCCTAAACACACCTACCACCCTATCGATCCACGGCTTACGCATCCCG-CTTCTTTGGCT
259 AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC-TCTCTGGCC
* * * *
21797693 GACCTTGTGCCCACCCGCCCGTCCACCCGCCCGTTTCGTCGGTTTGCTTAGGCATACGGAGTTCA
323 GGCC-AGTGCCCACCCGCCCG-CCACCCGCCCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCA
* * * * *
21797758 TTCCCAGTCTAAGATCAAACTGGATCTAGGGTGGCGGCAACCCATGCTAGGCTCGGGCATGTGCT
386 TTCCCAGTCTAAGATCAAACTGGACCTAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT
* * *
21797823 GGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACTTGACCGACGAC
451 GGTG-CGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC--CGGAGAACTTGACCGGCGGC
* * * * *
21797888 ATTAGGGTTC-AGGTGATCGGGGGGGTGTGAGCACATGGTGTGCGGTGGGTGCTAGTACTTGGCC
513 ATT-GGGTTCGAGGCGATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
21797952 CTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGACCATTTGAG
577 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAG
*
21798017 ATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
642 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
* *
21798080 GTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAATAAAAATACA
1 GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
21798145 AGGATCACG--T--C----TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATACCGAACC
66 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACC
*
21798202 GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAA
130 GTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
21798267 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATAAA
195 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
*
21798332 GATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGCCGG
260 GATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGG
* ** * **
21798397 CGCAGTGCCCGCCCGCTTGCCTGCCCGTTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATT
325 C-CAGTGCCCACCCGCCCGCC-ACCCGCCCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATT
* * * * *
21798462 CCCAATCTAAGATCAGACCGGACCGAGGGTTGCGACAGCA
388 CCCAGTCTAAGATCAAACTGGACCTAGGGTTGCGGCAGCA
21798502 GGATCGACAG
Statistics
Matches: 1609, Mismatches: 163, Indels: 124
0.85 0.09 0.07
Matches are distributed among these distances:
691 2 0.00
692 146 0.09
693 330 0.21
694 5 0.00
696 1 0.00
697 3 0.00
700 3 0.00
701 116 0.07
702 187 0.12
703 7 0.00
704 99 0.06
705 2 0.00
706 119 0.07
707 4 0.00
708 12 0.01
709 240 0.15
710 4 0.00
711 1 0.00
712 1 0.00
713 2 0.00
715 1 0.00
717 26 0.02
718 1 0.00
719 1 0.00
720 1 0.00
721 46 0.03
722 249 0.15
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (704 bp):
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGAACCG
TAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGC
CAGTGCCCACCCGCCCGCCACCCGCCCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCATTCCC
AGTCTAAGATCAAACTGGACCTAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGC
GCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCCGGAGAACTTGACCGGCGGCATTGGGTT
CGAGGCGATCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAACATTTGAGATTTTACAG
GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
Found at i:21801395 original size:26 final size:26
Alignment explanation
Indices: 21801366--21801418 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21801356 GTTGACTTAG
*
21801366 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21801392 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21801418 G
1 G
21801419 ATCGGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21802302 original size:26 final size:26
Alignment explanation
Indices: 21802272--21802324 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
21802262 GTTGACTTGG
* *
21802272 GCATATAAAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
**
21802298 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
21802324 G
1 G
21802325 ATCGGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:21804116 original size:26 final size:26
Alignment explanation
Indices: 21804080--21804130 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
21804070 TGAGTTAGGA
* *
21804080 ATACGGTGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
21804106 ATACGGAGTTCATTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
21804131 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:21804903 original size:904 final size:902
Alignment explanation
Indices: 21800489--21810655 Score: 9074
Period size: 903 Copynumber: 11.1 Consensus size: 902
21800479 GTTGGCTTAG
* * *
21800489 GCATACAGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * **
21800554 CTCGAGCATGTGCTGGTGCCACATTTTGCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * * * *
21800619 ACCTGACCGGCGGCATTGGGGATCCGACGATCGAGGGGGCCGGGGGGGTGTACGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGGCTGGGGGGTGTGCGCACATGATGTG
*
21800684 CGATGGGTGGTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
21800749 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
21800814 GGGTACACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-T-TTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTT
* * *
21800877 GTGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
21800942 AATTTTAAAAAATCCCAAACCTTAAAAAGTTTTTGAAAAA-CGTGAAAAATAGAAAACGAGTCGT
455 AATTTTAAAAAATCCCGAACCGTAAAAAG--TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
21801006 CTTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * *
21801071 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACTCACCTACCACCTTATCAATCCACGGCTT
583 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
21801136 GCGTATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCCGCC-CATCCGCCCGCTCGTTTCATCGAT
648 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCTCCGC--CCGCCCGCTCGTTTCGTCGAT
* * * ***
21801200 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAATC-AGACCAAGGCTTGCCACAGC
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGA-ACCGAGGGTTGTGGCAGC
* * * * * *
21801263 AGGATCGACAGCACGGAGAGGGGGA-CCGACCAATCCCTGGCTTACGCATCCCGCCCCTCTGACT
773 AGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* * *
21801327 GGCTGAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
838 GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
21801392 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * *** *
21801457 CTCGAGCTTGTGTTGGTGTCGCATTTTTCTTTGCCGAGGCACCATCGTCGGAGCATCGCTGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * *
21801522 ACCTGACTGACGGTAATT-GGGTTCCGACGATCGGGGGGGCCGGGGGGGGTGTGCGCACATGATG
131 ACCTGACCGACGG-CATTGGGGTTCCGACGATCGGGGGGG-C-TGGGGGGTGTGCGCACATGATG
* * *
21801586 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
21801651 ACACCCCCTTAAAAAGCATTTGAGATTTTTCAAGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
21801716 ATGGGGACACTTTTTTCAAACGGTCACAAAATCTTATACACTCTGGAGGTTTTAGCTG-ATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTGTT
* * * *
21801780 TTTGTGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTCGGGGCCAAAACTCTTTCTGA
387 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
21801845 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTGTT-GAAAATCATGAAAAATAGAAAACGAGTC
452 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGT-TTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
21801909 GTCTT-CTCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
516 GTCTTGC-CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * *
21801973 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTTATCAATCCACGG
580 ATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * *
21802038 CTTGCGCATCCCGTCTCTCTGGCCGACGCAGTGCCCGCCTGCC-CATCC-CCCTGCTCGTTTCAT
645 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCT-CCGC--CCGCCC-GCTCGTTTCGT
* * * * * ***
21802101 CGATTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCGGATCGAATCAAGGGTTGCCACA
706 CGATTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCA
* * * * * * * *
21802166 GTAGGATCGACAGCATGGAGAGGGGGACCCAACCAATCCCTGGCTTACGCATCCCACCCCTCTGG
771 GCAGGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * * * * * * *** *
21802231 CTGGCTGAACACCTGTACGCTCATTTCATGGGTTGACTTGGGCATATAAAGTTCATTCCTAGTCT
836 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
21802296 AA
901 AA
* * * *
21802298 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACGGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * ** * *
21802363 CTCGAGCTTGTGTTGGTGTTGCCTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * * *
21802428 ACCTGACTGACGGTAATT-GGGTTCCGACGATCGAGGGGG-TCGGGGGGTATGCGCACATGATGT
131 ACCTGACCGACGG-CATTGGGGTTCCGACGATCGGGGGGGCT-GGGGGGTGTGCGCACATGATGT
* * *
21802491 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
21802556 CACCCTCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCTTTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
21802621 TGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTCTTGAGTTTTTAGCTGAATT-TTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT-TCGAGTTTTTAGCTGAATTGTTT
* * * *
21802685 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAGGTTCGGGGCCAAAACTCTTTCTG-A
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * **
21802749 AAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGT
453 AAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
** * *
21802814 CTTGCCATGAAACTTCTTGTGAAGGCTTAAGGGACCATTGTATAAATTAACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * * * *
21802879 GCATTGGCATGTAGAAATATGAAGATATGCCTAAACGCACCTACCACACTATCAATTCATGGCTT
583 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
21802944 GCGCATCCCGCCTCTCTAGCTGGCGTCGTGCCCGCCCTCCGACCCACCCACTCGTTTCGTCGGTT
648 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCTCCG-CCCGCCCGCTCGTTTCGTCGATT
* * ** * *
21803009 GGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGAT-AGGACC-ACACCGAGGGTTACGGTAGTA
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA-GACCGA-ACCGAGGGTTGTGGCAGCA
* ** * * * * *
21803072 GGATCGGCAGCAAGCAGAGGGGGACCCGGTCGATCCCAGGCTTGTGCATCCCGTCCCTCTGGCTG
774 GGATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* * *
21803137 GTTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCGTACGGAGTTCATTCCCAGTCTAA
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
21803201 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCGAACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * *
21803266 CTTGGGCATGTGTTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCG-TCGGAC
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCT-GGAG
* * * *
21803330 AACCTGACCGACGGCATTGAGGTTCCGATGATCGGTGGGGTTAGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCT-GGGGGGTGTGCGCACATGATGT
*
21803395 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCTCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
21803460 CACCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
21803525 TGAGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
*
21803589 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * *
21803653 AAATTTTGAAAGATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
21803718 TTGCCGTGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
21803783 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
21803848 CGCTTCCCGTGTCTCTGGCCGATGTAGTGCCCGCCCGCC-CATCCGCCCGCTCGTTTCGTCGGTT
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCCTCCGC--CCGCCCGCTCGTTTCGTCGATT
* * ** * *
21803912 GGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGAT-TGAAATGAACCGAGGGTTATGGCAGCGG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCGAGGGTTGTGGCAGCAG
* * * * *
21803976 GATAGGCAGCACACAGAGGGGGACCCGACCGATCCCCAGCTTGCACATCCCGCCCCTCTGGCCGG
775 GATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * *
21804041 CTAAGCACCCGCACGCTCGTTTCGTGGGTTGAGTTAGGAATACGGTGTTCATTCCTAGTCTAA
840 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
21804104 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* ** ** * *
21804169 CTCGAGCATGTGGTGGTATCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGCTAGAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTGGAGA
* * **
21804234 ACCTGATCGATGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCAGTTGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
* * * **
21804299 GATGGGTGCTGGCACTTGGCCCTTATATTGGCCGCATATCCCTTTTCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
21804364 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAATGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
21804429 GGGACACTTTATTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTTA
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTG
* * *
21804494 TGTATGCCAAAAAAAATACAAGGATCACGTCTACCACGTTTGGGGTCAAAACTCCTTCCGAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
21804559 ATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAATATCGTGAAAAATAGAAAACAAGTCGTCTT
456 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
21804624 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTGCAGGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
21804689 TTGGTACGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACGGCTTGCG
586 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
21804754 CATCCCGCCTCTCTGGCCGGCGTAGTGCCCACCCGTCCGCCCGCCCGCTCGTTTCGTCGATTGGC
651 CATCCCGTCTCTCTGGCCGACGTAGTGCCC-CCC-TCCGCCCGCCCGCTCGTTTCGTCGATTGGC
* * * *
21804819 TTAGGCATACGGAGTTCATTACCAGTCTAAGATCAGACCGCATCGAGGGTTGTGGTAGCAGGATC
714 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATC
* * * *
21804884 GGCAACACGTAGAGGGGGACCCGGCCAATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
779 GGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
21804949 GCACCCGCACGCTCGTTTCGTGGGTTGACTTAGG-ATACGGAGTTCATT-CTAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
21805006 GCTTACGGAGTTCATTCCTAGTCTAAAATCAGACCGGACCAAGGGTTGCTG-CAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC-GACAGCACATGCTGG
* * * * **
21805070 GCTCGTGCATGTGCTGGTGTCGCATTTTTCTTC-TCCGAGGCACCATC-ACTGGAGCATCGCCAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCAT-CGGGGCACCATCGTC-GGAGCATCGCTGG
* * * ** * * *
21805133 ACAACCTGACCGGCGGCATTGGGGTTCCGACAATCGCAGGGGCCGAGGGGTGTGCACACATGATG
128 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATG
* * * * *
21805198 TGTGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTAGAGAGCTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
21805263 ACCACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTCCTGCCAGTAGCCGTTAAAGTGTCTGA
258 A-CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
21805328 AATGGGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGAATTG-T
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTT
* * *
21805392 TTTGTGCATACCAACAAAAATACAAGGATCACGTCTACCAATTTTGGGGCCAAAACTCC-T--GA
387 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * * * * * *
21805454 AAAATTTTTAAAAAATCCCAAACCGCAAAAGGTTTCAAAAATCATAAAAAATAGAAAATGAGTCG
452 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
21805519 TCTTGCCATGAAACTTCATGTGAATGCTTAAGGG-CCATTGTATGAATTTACAAGCCATAAAAAT
517 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
21805583 GGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCAACGACT
582 GGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
21805648 TGCGCGTCCCGTCTCTCTGGCCGGCGTAATG----CCT--GCCCGTCCGCTCGTTTTGTCGATTG
647 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCTCCGCCCGCCCGCTCGTTTCGTCGATTG
* * * * *
21805707 GCTTAGGCATACGAAGTTCTTTCCCAGTCTAAGATC-GAACCGAACCGAGGGTTGCGGAAACAGG
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGAACCGAGGGTTGTGGCAGCAGG
* * * * * * * *
21805771 ATTGGCAGCATGCAGAGGGGGACCCGGCTAATCCCCGGCTTGCGCATCCTGCACTTCTGGCCGAC
776 ATCGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
21805836 TGAGTGCCAGCTTGCCCGACCGCCCACTTGTTTCATTGGTTGGCTTAGGCATACGGAGTTCATTC
841 TGAGCGCC--C--G--C-A-CG----CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
21805901 CCAGTCTAA
894 CCAGTCTAA
* * * * * * * *
21805910 G-ATTGTAC-CAGACTGAGGGTTGCGGCAG--TAGGATC-GACAGCACGCCGAGGG--G-GAC-C
1 GCA---TACGGAG-TTCA---TT-C-CCAGTCTAAGATCAGACCGGA--CCGAGGGTTGCGACAG
* ** * * * * * ** * * *
21805966 CTACTAATCCCCGGCTTGCGCATCCCGCCCCT-CTGGCCGGCTAAGCGTCCGTACGCTCGTTTCG
55 C-AC--ATGCTGGGCTCGAGCAT---G----TGCTGG--TGC--CGCAT-TTTTC-TTC--ATCG
* * * * * * * *** * * * ***
21806030 TGAGTTG-ACTTAGGCATACGAAGTTTATTCCCAGTCTAAGCAT-A-CGAAGTTCATTCCCAG-T
102 -G-G--GCAC-CA-TCGT-CGGAG--CA-TCGCTGGAGAA-CCTGACCGACG-GCATT-GGGGTT
* * * **** * * * * * * *
21806091 -CTAAGATCTGACCTGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGA-GCAAGTGCTGGTGC-
154 CCGACGATCGGGGGGGCT-GGGGGGTGT-GC-GCACATGATGTG--CGATG--GGTGCTGGTACT
* ** * * * ** * * * ** *
21806153 -CGCATTTTTCTTTGCCTGGGCACC-ATCGCCAGAGC-ATCGC-CGGAGAACTTGACCGACGGCA
212 TGGCCCTTATATTGGCC----C-CCTATC-CCTCATCAAAC-CTC-GAGAAC-TCA-C-ACCCCC
*** * ** * ***** * * **
21806214 TTGGGGTTCCGACGATCGGGGGGGCCA-AGGGGGGTGTGC-GCACA-TATGTGCGA-T-GGGT-T
266 TTAAAG---AG-C-ATTTGAGATTTTACA----GGTTTGCTGC-CAGTA---GCCATTAAAGTGT
* * * * * ** ** * ** *
21806273 CTGGTACT-TGG-CCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC-TC-C
318 CT-GAAATGGGGACACTT-T-TT----TCAAAT-GGTCA-CAAA-ATCTTG---T-ACACTTCGA
* *** ** * *
21806334 CTTAAAGAGCATTTGAGATT-TTACAGGTTTGCTGCCAGTAGCC-ATTAAAGTGTCTGAAATGGG
369 GTT-TTTAGC---TGA-ATTGTT-----TTTG-TG-CA-T-GCCAAAAAAAAT-AC---AA---G
* * ** * * * * * ** ***** * *
21806397 GA-CACTTTTTTCAA--AT-GGTCACAAAA-T-CTT--G-TATAGTTCGAGTTTTTAGCTGAATT
413 GATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCCGAA--
** ** * ** * * * * *
21806453 CTTTTGTACA-TGCCAACAAA-AGT-AAAGGGATCATGTCTAAAA--A-T--TTTGTGGC-TAAA
474 C-CGTAAAAAGTTTCAA-AAATCGTGAAA--AAT-A-G---AAAACGAGTCGTCT-TGCCATGAA
** *** *** ** * ** * **
21806509 ACTCTTTC-CGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
529 A--C-TTCACG-TGAAGGCTTAAGGGA--CC--ATTGTATGAA-TTT-ACAAGCCAT-AAAAAT-
* * * ** * * * * ** ***
21806573 GAAAACGAGTCGTCTTGCCATGAAACT-TCACATGAAG-GCTTAAGGGA-CCACTGTATGAATTT
582 G---GC-A-TTGGCACG-CA-GAAA-TATGA-A-GATGTGCCTAA---ACCCAC-CTACCACCCT
* *** * ** * *** * ** * * *
21806635 AGAAGCCAGAAAAATGGCATTG-GCA-CACAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
633 ---A-TC-GATCCACGGC-TTGCGCATC-C---CGTCT--CTCTG-GCC--GACGTA-GTGCCCC
* * * * ** * ** *
21806698 CCTATCGATACACAGCTTGCGCATCCCGTCTC-TCTGACCGG-TGTAGTGC--CCGCCCGCTAGC
682 CCT-CCG---C-CCGC--CCGC-T--CGTTTCGTC-GATTGGCT-TAG-GCATACG-GAG-T-TC
** * ** **** ** * * * * * * **
21806759 CCTCCCAATCGTTTCG-TCA-ATTTTACATAAGCTTATGG-AGTTCA--TTC-CCAG-TCTAAGA
731 ATTCCCAGTC--TAAGATCAGACCGAACCGAGGGTTGTGGCAG--CAGGATCGGCAGCACGCAGA
** ** * ** * * * *
21806817 -TTGGACTGGACCGAGGGTTGCTGTAGCAAGATTGGCAGCA-CACAGAGGGGGACCCGATCGATC
792 GGGGGACCCGACC-A--ATCCCCG--GC----TT-GC-GCATC-C------CG-CCC-CTC--TG
* ** * * * * * * **
21806880 CCCAACTTGTGCATCCCGCTCCACTGGC-CGGTT-GAGGGCTCGCACGCTCGTTTCGTGGGTTGA
835 GCCGGC-TGAGC-GCCCG---CAC--GCTCGTTTCGTGGG-TTG-A----C--TT--AGGCAT-A
*
21806943 CTTAGGCA-TACGGAGTTCATTCCTAGTCTAA
882 C---GG-AGTTC--A-TTC---CC-AGTCTAA
* * *
21806974 GCATATGGAGTTCATTCCCAGTCTAAGAT-----CGGACTGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* * * * * * *
21807034 CTTGAGCATGTGCTGGTG-CGTATTTATCTCCACCGAGGCACCATCGTCGGAAGCATCGCCGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGG-AGCATCGCTGGAG
*
21807098 AACCTGACCGACGGCATTGGGGTTTCGACGATC-GGGGGGCTGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
* * * *
21807162 CAATGGGTACTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
21807227 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
** *
21807292 GGGGATGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATT-TTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTT
* * * * * * **
21807356 ATGCATGCCAACAAAAATACAACGATCACGTCTACCAAGTTTTGGACTAAAACTCCTTTTGAAAA
390 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** * *
21807421 AATTTTAAAAAATCCCGAACCGCAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCT
455 AATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
21807486 TGCCATGAAACTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
520 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
21807551 ATTGGTATGTAGAAATATGAAGATGTGCCTAAACCCATCTACCATCCTATCGATACACGGCTTGC
585 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
21807616 GCTTCCCGTCTCTCTGGCCGACGTAGTG-----CT-CGCCCACCCGCTTGTTTCGTCGGTTGGCT
650 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCTCCGCCCGCCCGCTCGTTTCGTCGATTGGCT
* * * ** * * **
21807675 TAGCCATACAGAGTTCATTCCCAGTGTAAGATTGGACCGGACCGAGTGTCATGGCAGCAGGATCG
715 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCG
** * * * * * *
21807740 ATAGCACACAGAGGGGGGCCCCG-CCAATCCCCGGCTTGCACATCCCGCCCCTTTGGTCGACTGA
780 GCAGCACGCAGA-GGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * *
21807804 GCGCCTGCAGGCTTGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCTAA
844 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
21807863 CCATATGGAGTTCATTCCCAGCCTAAGATCAAACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* *
21807928 CTC-AGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTGTCGGAGCATTG-TCGGA
66 CTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCT-GGA
* * * **
21807991 G-ACCTGACCGACGGCATTGGCGTTCCGATGATCGGGGGGGCCGGGGGGTGTGTACACATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGT
* * *
21808055 GCGATGGGTGCTGGTACATGGCCCTCATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
21808120 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
21808185 TGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAA-TGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
* * *
21808249 TGCGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCAAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* ** **
21808314 AAATTTTTAAAAATCTTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
21808379 TTGCCATGAAGCTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATAG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
21808444 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACCGCTTA
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
21808509 CGCATCCCGTCTCTTTGGCCGACGTAGTG-----C-CCGCCCGCTCGCTCGTTTCGTC-AGTTGG
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCTCCGCCCGCCCGCTCGTTTCGTCGA-TTGG
* * * * *
21808567 CTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGAAGTAAGAT
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGAT
* * * * ** * * *
21808632 CGACAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTATGCATCTCGCCACTCTTGCCGGCTG
778 CGGCAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* * *
21808697 AGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAATGGAGTTCATTCCCAGTCTAA
843 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
21808757 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTGGCGGCAGTACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
* ** * *
21808822 CTCGGGCATGTGCTGGCACCGCATTTTTCTTCATCGAGGCACCCTCG-CTGGAGCATCG-TCGGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGCT-GGA
* * *
21808885 GAACCTGACCTG-CGACATTGGGGATCCGACGATCGGGAGGGGC-GGGGGGTGTGTGCACATGAT
129 GAACCTGACC-GACGGCATTGGGGTTCCGACGATCGGG-GGGGCTGGGGGGTGTGCGCACATGAT
* * *
21808948 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCACCAAACCTCAAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
21809013 CACACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCT-A
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
21809077 GAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TGT
322 -AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGT
* * * * * **
21809141 TTTTGTGCATGCCAAAAAAAATACAAGGATCGCGTCTACCAGGTTTGGGGCTAAAACGCCGTCTA
386 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
21809206 AAAAAATTTTTAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
451 AAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
21809271 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
**
21809336 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
581 TGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * * * *
21809401 TTGCACATCCCGTCTCTCTGGCCGACGTAATGCCGCCCC-CCTGCCCGCCAGTTCGATTCATCGG
646 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-CCCCTCC-GCCCGCCCGCTCGTTTCGTCGA
* * *
21809465 TTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGATC-GAACC-AGACTGAGGGTTGTGGCAG
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGA-ACCGAGGGTTGTGGCAG
* * * * * * * *
21809528 TAGGATCGGCAAG-ACGCAAAGAGGGACCTGACCGATCCCCGGCTCGCGCATCCCACCCCTTTGG
772 CAGGATCGGC-AGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* *
21809592 CCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
836 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
21809657 AA
901 AA
* * * * * * *
21809659 GCGTACGAAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGTGG-TGCGGCAGCACATGCTGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAG-GGTTGCGACAGCACATGCTGG
* * *
21809723 GCTTGGGCATGT-CTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---T-----CA-C-C-GGAG
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTGGAG
* * ** * * *
21809776 AACCTCACTGGTGGCATTGGGGTTCCCAC-ATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTA
130 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTG
21809839 CGATGGGTGCTGGTACTT-GCCCTTTATATTGGCCCCCTATCCCTCATC-AACCTCGAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
21809902 CACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
21809967 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTG-TTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTT
* * * *
21810031 TGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCAAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
21810095 AAATTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
454 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* **
21810160 TTGCCATGAAACTTCACGTGAAAGCTTAAATGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
21810225 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCGCCTGCCACCCTATCGATCCACGGCTTG
584 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
*
21810290 CGCATCCCGTCTCTTTGGCCGACGTAGTGCCTACGCCC-CCGCCCGCCCGCTCG-TTCGTC-AGT
649 CGCATCCCGTCTCTCTGGCCGACGTAGTGCC--C-CCCTCCGCCCGCCCGCTCGTTTCGTCGA-T
* * * * * * * *
21810352 TGGCTTAGGCGTACGGAGTTCATTCCCAATCTAAGATTAGACCGGACTGAAGGTTGCGACAGCAG
710 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAG
* * * * * * *
21810417 GATCGACAAG-ATGCAGAGGGGGTCCCGACCAATCCCTGGCTTACGCATCCTGACCCTCTGGCCG
775 GATCGGC-AGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
** *
21810481 ATTGAGCGCCCGCACGCTCGTTTCGTGGGTTCG-CTTAGGCATACGAAGTTCATTCCCAGTCTAA
839 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
21810545 GCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGCTTG-TAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGA-CAGCACATGCTGG
* * *
21810609 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCAGGGCACCATC
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATC
21810656 ATCAGAGAAC
Statistics
Matches: 7581, Mismatches: 1259, Indels: 862
0.78 0.13 0.09
Matches are distributed among these distances:
885 1 0.00
886 454 0.06
887 231 0.03
888 72 0.01
889 39 0.01
890 165 0.02
892 3 0.00
893 48 0.01
894 802 0.11
895 522 0.07
896 11 0.00
897 1 0.00
898 117 0.02
899 92 0.01
900 3 0.00
901 35 0.00
902 751 0.10
903 1477 0.19
904 1036 0.14
905 305 0.04
906 355 0.05
907 3 0.00
908 9 0.00
909 24 0.00
910 13 0.00
911 2 0.00
912 1 0.00
913 3 0.00
914 4 0.00
915 8 0.00
916 1 0.00
917 2 0.00
918 3 0.00
919 4 0.00
920 2 0.00
921 2 0.00
923 2 0.00
924 1 0.00
925 4 0.00
926 5 0.00
927 4 0.00
928 1 0.00
929 3 0.00
930 3 0.00
931 16 0.00
932 35 0.00
933 14 0.00
934 22 0.00
935 20 0.00
936 5 0.00
937 15 0.00
939 8 0.00
940 12 0.00
941 4 0.00
942 6 0.00
943 2 0.00
945 3 0.00
946 2 0.00
947 5 0.00
948 4 0.00
949 10 0.00
950 14 0.00
951 4 0.00
952 2 0.00
953 3 0.00
954 5 0.00
955 4 0.00
956 6 0.00
957 3 0.00
958 3 0.00
959 12 0.00
960 6 0.00
961 5 0.00
963 3 0.00
964 9 0.00
965 3 0.00
966 3 0.00
967 7 0.00
968 6 0.00
969 5 0.00
970 6 0.00
971 3 0.00
972 7 0.00
973 3 0.00
974 7 0.00
975 10 0.00
976 17 0.00
977 12 0.00
978 23 0.00
979 12 0.00
980 4 0.00
981 16 0.00
982 2 0.00
983 24 0.00
984 6 0.00
985 11 0.00
986 21 0.00
987 10 0.00
988 13 0.00
989 17 0.00
990 9 0.00
991 2 0.00
992 3 0.00
993 1 0.00
994 1 0.00
995 3 0.00
996 2 0.00
997 10 0.00
998 9 0.00
999 3 0.00
1000 8 0.00
1001 11 0.00
1002 2 0.00
1004 4 0.00
1005 6 0.00
1006 12 0.00
1007 6 0.00
1009 5 0.00
1010 1 0.00
1011 17 0.00
1012 13 0.00
1013 3 0.00
1014 7 0.00
1015 3 0.00
1016 1 0.00
1019 8 0.00
1020 1 0.00
1021 2 0.00
1022 14 0.00
1023 6 0.00
1024 590 0.08
1025 792 0.10
1026 895 0.12
1027 948 0.13
1028 847 0.11
1029 1025 0.14
1030 791 0.10
1031 770 0.10
1032 723 0.10
1033 707 0.09
1034 634 0.08
1035 665 0.09
1036 753 0.10
1037 668 0.09
1038 544 0.07
1039 586 0.08
1040 592 0.08
1041 503 0.07
1042 576 0.08
1043 1046 0.14
1044 457 0.06
1045 531 0.07
1046 542 0.07
1047 620 0.08
1048 723 0.10
1049 337 0.04
1050 591 0.08
1051 396 0.05
1052 475 0.06
1053 275 0.04
1054 376 0.05
1055 624 0.08
1056 460 0.06
1057 320 0.04
1058 342 0.05
1059 430 0.06
1060 498 0.07
1061 368 0.05
1062 311 0.04
1063 588 0.08
1064 458 0.06
1065 356 0.05
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCTGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGACGTAGTGCCCCCCTCCGCCCGCCCGCTCGTTTCGTCGATTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCGAGGGTTGTGGCAGCAGGATCGG
CAGCACGCAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:21806072 original size:26 final size:26
Alignment explanation
Indices: 21806043--21806095 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21806033 GTTGACTTAG
*
21806043 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21806069 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
21806095 G
1 G
21806096 ATCTGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:21806984 original size:26 final size:26
Alignment explanation
Indices: 21806948--21807000 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21806938 GTTGACTTAG
*
21806948 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21806974 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21807000 G
1 G
21807001 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21809274 original size:895 final size:893
Alignment explanation
Indices: 21805874--21810655 Score: 6151
Period size: 894 Copynumber: 5.3 Consensus size: 893
21805864 TGTTTCATTG
* * *
21805874 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT-GTACCAGACTGAGGGTTGCGGCAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCGGACCGAGGGTTGTGGCAG
* * * * *
21805938 TAGGATCGACAGCACGCCGAGGGGGACCCTACTAATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
65 CAGGATCGACAGCACACAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * * *
21806003 CGGCTAAGCG-TCCGTACGCTCGTTTCGTGAGTTGACTTAGGCATACGAAGTTTATTCCCAGTCT
130 CGGCTGAGCGCT-CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * *
21806067 AAGCATACGAAGTTCATTCCCAGTCTAAGATCTGACCTGATCGAGGGTTGTGGCAGCACATGCTG
194 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTG
* * * **
21806132 GGCTCGAGCAAGTGCTGGTGCCGCATTTTTCTTTGCCT-G-GGCACCATCGCCAGAGCATCGCCG
259 GGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TT-CATCGAGGCACCATCGCTGGAGCATCGCCG
*
21806195 GAGAACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAAGGGGGGTGTGCGCACAT-
322 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-C--GGGGGGTGTGCGCACATG
*
21806259 ATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
384 ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAA
*
21806324 CTCACACTCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
449 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT
* *
21806389 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTATAGTTCGAGTTTTTAGCTGAATTC
514 GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-
* * * ** * * * *
21806454 TTTTGTACATGCCAACAAAAGTA-AAGGGATCATGTCTAAAAATTTTGTGGCTAAAACTCTTTCC
578 TTTTGTGCATGCCAACAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCT
* * *
21806518 GAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGT
642 AAAAAAATTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
* * * *
21806583 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACCACTGTATGAATTTAGAAGCCAGAAAA
707 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
** * * *
21806648 ATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATACACAG
772 ATGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* ** *
21806713 CTTGCGCATCCCGTCTCTCTGACCGGTGTAGTGCCCGCCCGCTAGCCCTCCCAATCGTTTCGTCA
837 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CC-C--G-CC-CGC--TCGTTTCGTC-
21806778 A
893 A
* ** * * * * * * *
21806779 TTTTACATAAGCTTATGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGCT-GTAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTG-TGGCAG
* * * * * ** * * *
21806843 CAAGATTGGCAGCACACAGAGGGGGACCCGATCGATCCCCAACTTGTGCATCCCGCTCCACTGGC
65 CAGGATCGACAGCACACAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * *
21806908 CGGTTGAGGGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTA
130 CGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * *
21806973 AGCATATGGAGTTCATTCCCAGTCTAAGATC-G----GACTGAGGGTTGTGACAGCACATGCTGG
195 AGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
21807033 GCTTGAGCATGTGCTGGTG-CGTATTTATCTCCACCGAGGCACCATCG-TCGGAAGCATCGCCGG
260 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCT-GG-AGCATCGCCGG
*
21807096 AGAACCTGACCGACGGCATTGGGGTTTCGACGATC-GGGGGGCTGGGGGGTGTGCGCACATGATG
323 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGC-GGGGGGTGTGCGCACATGATG
* * * *
21807160 TGCAATGGGTACTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTTGAGAACTC
387 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
21807225 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
452 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
** *
21807290 ATGGGGATGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
517 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * * * * *
21807355 TATGCATGCCAACAAAAATACAACGATCACGTCTACCAAGTTTTGGACTAAAACTCCTTTTGAAA
581 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTAAAA
* * ** * *
21807420 AAATTTTAAAAAATCCCGAACCGCAAAAGGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATC
646 AAATTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
21807485 TTGCCATGAAACTTCATGTGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
711 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
21807550 CATTGGTATGTAGAAATATGAAGATGTGCCTAAACCCATCTACCATCCTATCGATACACGGCTTG
776 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
21807615 CGCTTCCCGTCTCTCTGGCCGACGTAGTGCTCGCCCACCCGCTTGTTTCGTCG
841 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCA
* * * * * **
21807668 GTTGGCTTAGCCATACAGAGTTCATTCCCAGTGTAAGATTGGACCGGACCGAGTGTCATGGCAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGC
* * * * *
21807733 AGGATCGATAGCACACAGAGGGGGGCCCCG-CCAATCCCCGGCTTGCACATCCCGCCCCTTTGGT
66 AGGATCGACAGCACACAGA-GGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
* * * *
21807797 CGACTGAGCGC-CTGCAGGCTTGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTCT
130 CGGCTGAGCGCTC-GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
21807861 AACCATATGGAGTTCATTCCCAGCCTAAGATCAAACCGGACCGAGGGTTGCGACAGCACATGCTG
194 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTG
* * * * *
21807926 GGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCATCGGGGCACCATTG-TCGGAGCATTGTCGG
259 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCT-GGAGCATCGCCGG
* * **
21807990 AG-ACCTGACCGACGGCATTGGCGTTCCGATGATCGGGGGGGCCGGGGGGTGTGTACACATGATG
323 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG-CGGGGGGTGTGCGCACATGATG
* * *
21808054 TGCGATGGGTGCTGGTACATGGCCCTCATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTC
387 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
21808119 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
452 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
21808184 ATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATGTTTT
517 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTT
* * *
21808249 TGCGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTT-TCAAA
581 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCT-AAA
** *
21808313 AAAATTTTTAAAAATCTTGAACCACAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
645 AAAATTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
21808378 CTTGCCATGAAGCTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATA
710 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
21808443 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCATCGATCCACCGCTT
775 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
21808508 ACGCATCCCGTCTCTTTGGCCGACGTAGTGCCCGCCCGCTCGCTCGTTTCGTCA
840 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCA
* * * *
21808562 GTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGAAGT
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGC
* * * ** * * *
21808627 AAGATCGACAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTATGCATCTCGCCACTCTTGCC
66 AGGATCGACAGCACACAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
* *
21808692 GGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCAAATGGAGTTCATTCCCAGTCTAA
131 GGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
21808757 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTGGCGGCAGTACATGCTGGG
196 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
21808822 CTCGGGCATGTGCTGGCACCGCATTTTTCTTCATCGAGGCACCCTCGCTGGAGCATCGTCGGAGA
261 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCTGGAGCATCGCCGGAGA
* * *
21808887 ACCTGACCTG-CGACATTGGGGATCCGACGATCGGGAGGGGCGGGGGGTGTGTGCACATGATGTG
326 ACCTGACC-GACGGCATTGGGGTTCCGACGATCGGG-GGGGCGGGGGGTGTGCGCACATGATGTG
* * *
21808951 CGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCCCTATCCCTCACCAAACCTCAAGAACTCAC
389 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
21809016 ACCCCCTTAAAGACCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCT-AGAA
454 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AA
21809080 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGTTTTT
518 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTT
* * * * *
21809145 GTGCATGCCAAAAAAAATACAAGGATCGCGTCTACCAGGTTTGGGGCTAAAACGCCGTCTAAAAA
582 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTAAAAA
*
21809210 AATTTTTAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
647 AATTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
21809275 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAACTTACAAGCCATAAAAATGGC
712 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
21809340 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
777 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * *
21809405 ACATCCCGTCTCTCTGGCCGACGTAATGCCGCCCCCCTGCCCGCCAGTTCGATTCATCG
842 GCATCCCGTCTCTCTGGCCGACGTAGTG-C-CCGCCC-GCCCG-C---TCGTTTCGTCA
* * * * *
21809464 GTTGGCTTAGGCATACGGAGTTCATTCCTAATCTAAGA-TCGAACCAGACTGAGGGTTGTGGCAG
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAG-ACCGGACCGAGGGTTGTGGCAG
* * * * * * * * * *
21809528 TAGGATCGGCAAG-ACGCAAAGAGGGACCTGACCGATCCCCGGCTCGCGCATCCCACCCCTTTGG
65 CAGGATCGAC-AGCACACAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * *
21809592 CCGGTTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
129 CCGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * *
21809657 AAGCGTACGAAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGTGG-TGCGGCAGCACATGCT
194 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG-GGTTGCGGCAGCACATGCT
* * * *
21809721 GAGCTTGGGCATGT-CTGGTGCCGCATTTTTCTTCGTCGGGGCACCA----T----CA---CCGG
258 GGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCTGGAGCATCGCCGG
* * ** * *
21809774 AGAACCTCACTGGTGGCATTGGGGTTCCCAC-ATCGGGGGGCCGGGGGGTGTGCGCACATGATGT
323 AGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGT
*
21809838 ACGATGGGTGCTGGTACTT-GCCCTTTATATTGGCCCCCTATCCCTCATC-AACCTCGAGAACTC
388 GCGATGGGTGCTGGTACTTGGCCC-TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
21809901 ACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
452 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
21809966 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGTTGAATTGTTT
517 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTT
* * * *
21810031 TGTGCAAGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAA-TCCTTCCAAAA
581 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTAAAA
* * *
21810095 AAATTTTTAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
646 AAATTTTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* **
21810160 TTGCCATGAAACTTCACGTGAAAGCTTAAATGACCATTGTATGAATTTACAAGCCATAAAAATGG
711 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
21810225 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCGCCTGCCACCCTATCGATCCACGGCTTG
776 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
21810290 CGCATCCCGTCTCTTTGGCCGACGTAGTGCCTACGCCCCCGCCCGCCCGCTCGTTCGTCA
841 CGCATCCCGTCTCTCTGGCCGACGTAGTGCC--CG--CCCGCCCGCTCG-T--TTCGTCA
* * * * * *
21810350 GTTGGCTTAGGCGTACGGAGTTCATTCCCAATCTAAGATTAGACCGGACTGAAGGTTGCGACAGC
1 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGC
** * * * * *
21810415 AGGATCGACAAG-ATGCAGAGGGGGTCCCGACCAATCCCTGGCTTACGCATCCTGACCCTCTGGC
66 AGGATCGAC-AGCACACAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGC
** * *
21810479 CGATTGAGCGCCCGCACGCTCGTTTCGTGGGTTCG-CTTAGGCATACGAAGTTCATTCCCAGTCT
130 CGGCTGAGCGCTCGCACGCTCGTTTCGTGGGTT-GACTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * **
21810543 AAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGCTTGTAGCAGCACATGCTG
194 AAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTG
*
21810608 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATC-AGGGCACCATC
259 GGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGA-GGCACCATC
21810656 ATCAGAGAAC
Statistics
Matches: 3393, Mismatches: 425, Indels: 134
0.86 0.11 0.03
Matches are distributed among these distances:
883 2 0.00
884 1 0.00
885 2 0.00
886 457 0.13
887 220 0.06
888 72 0.02
889 179 0.05
890 44 0.01
892 2 0.00
893 44 0.01
894 799 0.24
895 526 0.16
896 8 0.00
897 26 0.01
898 444 0.13
899 30 0.01
900 86 0.03
901 28 0.01
902 233 0.07
903 4 0.00
904 1 0.00
905 183 0.05
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGTGGCAGC
AGGATCGACAGCACACAGAGGGGGACCCGACCAATCCCCGGCTTGCGCATCCCGCCCCTCTGGCC
GGCTGAGCGCTCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCATCGAGGCACCATCGCTGGAGCATCGCCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCTAAAAAAATT
TTTAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCA
Found at i:21809670 original size:26 final size:26
Alignment explanation
Indices: 21809636--21809685 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
21809626 GACTTAGGCA
* *
21809636 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGAAGTTCATTCCCAATCTAAGCG
21809662 TACGAAGTTCATTCCCAATCTAAG
1 TACGAAGTTCATTCCCAATCTAAG
21809686 ATCGGACCAG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAATCTAAGCG
Found at i:21811704 original size:26 final size:26
Alignment explanation
Indices: 21811674--21811726 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21811664 GTTGACTTAG
21811674 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21811700 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21811726 G
1 G
21811727 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21812611 original size:26 final size:26
Alignment explanation
Indices: 21812575--21812627 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21812565 GTTGACTTAG
* *
21812575 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21812601 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21812627 G
1 G
21812628 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21814544 original size:26 final size:26
Alignment explanation
Indices: 21814508--21814560 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21814498 GTTGACTTAG
* *
21814508 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21814534 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21814560 G
1 G
21814561 ATCAGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21815439 original size:25 final size:26
Alignment explanation
Indices: 21815405--21815455 Score: 95
Period size: 25 Copynumber: 2.0 Consensus size: 26
21815395 GTTGACTTAG
21815405 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21815430 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21815456 AATCGGACCG
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 16 0.64
26 9 0.36
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21816336 original size:26 final size:26
Alignment explanation
Indices: 21816298--21816350 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21816288 GTTGACTTAG
21816298 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
21816324 GCATACGGGGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
21816350 G
1 G
21816351 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:21816417 original size:894 final size:890
Alignment explanation
Indices: 21813637--21816547 Score: 4007
Period size: 895 Copynumber: 3.2 Consensus size: 890
21813627 TAACTTAGGT
* * * * * * * *
21813637 ATACGGAGTTCATTCCCAGTTTAAGATCGGATCAGACCGAGGGTTGTGATAGCACATGCTAGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGGCT
* * *
21813702 CGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCGCCAGAGCATCGCCGGAGAA
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCAGAGCATCACCAGAGAA
* * *
21813766 CTTGACCGGCGGCATTGGAGTT-CGACGATCGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGC
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCC--GGGGGGTGTGCGCACATGATGTGC
* * * *
21813830 GTTGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTTGAGAACACACA
193 GATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
21813895 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATC
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
21813960 GGGACACTTTTTTCAAAAT-GTCACAAAACCTTGTACACTTTCGAATTTTTAGCTGAATTTTTTT
323 GGGACACTTTTTTC-AAATGGTCACAAAATCTTGTACAC-TTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
21814024 GTGCATGCCAAAAAAAATACAAGGATCATGTATACCAAGTTTGGGGCCAGAACTCCTTCCAAAAA
386 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCGAAAAA
* * *
21814089 ATTTTTGAAAAATTCTGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCT
451 A-TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCT
*
21814154 TGCCATGAAACTTCACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
21814219 ATTGGTATGTAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCATGTAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * * * *
21814284 GCATTCCGTTTCTATGGCCGGCATAGAGCCCGCCCGCACGTCCACTTGTTTCGTTGGTTGGCTTA
644 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C--CCGCTCGTTTCATCGGTTGGCTTA
* * *
21814349 GGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGACCAAGGGTT--ATGACAGCAAGATC-
705 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCA-G-TAGCAGGATCA
* * * * *
21814411 GACAGCACATAGA-GGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGA
768 G-TAGGACACAGAGGGGGACCCGA-CGATCCCCGGCTTGCCCATCCCGCCCCTCTGGCCGGCTGA
*
21814475 ACGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGC
831 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA-TTCCAGTCTAAGC
* *
21814536 ATACAGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTGCGACAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGGCT
* *
21814601 CGGGCATGTGTTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCAGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCAGAGAAC
* * * * *
21814666 TTGACCTG-CGGCATTGGGGTTTCGACGATTAGGGGGGCCGGGGGGATGTGCGTACATGATGTAC
131 CTGACC-GACGGCATTGGGGTTCCGACGA-TCGGGGGGCCGGGGGG-TGTGCGCACATGATGTGC
* *
21814730 GATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTAGCCCTCATCAAACCTCTAGAACTCACA
193 GATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
21814795 CCCCCTTAAAGAACATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
258 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * *
21814860 GGGACACTTTTTT-GAATGGTCACAAAATCTTGTACACTTCGAGTTTTCAGCTGAAATGTTTTAT
323 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
21814924 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACGCCTTCCGAAAAAA
388 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC-TCTTTCGAAAAAA
* ** * *
21814989 TTTTCAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTA
452 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTG
21815054 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
517 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
21815119 AGGCACGCT-GAAATATGAAGATGTACCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGT
582 TGGCATG-TAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGC
*
21815183 ATCCCGTCTCTCTGGCCGACGTAGTGCTTGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGG
646 ATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGG
* * *
21815248 CATATGGAGTTCATTCCCGGTCTAAGATTAGACCGGACCAAGGGTTGCAGTAAG-AGGATCAGTA
707 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGT-AGCAGGATCAGTA
* * ** * *
21815312 GCACATAGAGGGGGACCCGACTGATCCTTGGCTTG-CGATCCCGCCCCTCTGGTCGGCTGAGCGC
771 GGACACAGAGGGGGACCCGAC-GATCCCCGGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
21815376 CCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGC
835 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGC
* * *
21815432 ATACGGAGTTCATTCCCAGTCTAAAATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCT
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGGCT
* * * * *
21815497 CGAGG-ATGTGCTGGTGCTGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGCCAGGGAA
66 CG-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCAGAGAA
* *
21815561 CCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGA
130 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
* * * * *
21815626 TGGGTGCTAGTACTTGGCCCTTATATTGGGCCCTTATCTCTCATCAAACCTCGAGAACTCACACC
195 TGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
21815691 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCAATTAAAGTGTCTGAAATGGG
260 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* *
21815756 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAACTTAATTTTTTTGTGC
325 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
*
21815821 AAGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAATT
390 ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC-TTTCGAAAAAATT
* *
21815886 TAAAAAAATCCCGAACCGCAAAAAGTTTTGAAATTCATGAAAAATAGAAAACGAGTCATCTTGCC
454 TTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCC
* * * *
21815951 ATGAAACTTCACGTGGAGGCTTAAGGGACCGTTGTATTAATTTACAAGCCATAAAAATGGCATTC
519 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
* * * *
21816016 ACATGTAGAAAAATGAAGATATGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCGCAT
584 GCATGTAGAAATATGAAGATGTGCCTAAA-CCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* * * * *
21816081 CCCATCTCTCTAGTCGACGTAGTGCCCACCCGCCCGCTCGTTTCATCGGTTGGCTAAGGCATACG
648 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACG
* * * * *
21816146 GAGTTCATTCCCAGTCTAAGATCAGACCAGATCGAGGGTTGCAGTAGCAGGATCAGTTGGACGCA
713 GAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTAGCAGGATCAGTAGGACACA
* * * *
21816211 GAGGGGGACCCGATCGACCCCCGGCTTGCCCATCCTGCCTCTCTGGCCGACTGAGCGCCCGCACG
778 GAGGGGGACCCGA-CGATCCCCGGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
*
21816276 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGC
842 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGC
* * *
21816326 ATACGGGGTTCATTCCCAGTCTAAGATCAGACCGGA-CTGAGGGTTACGGCAGCACATGCTGGGC
1 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATC-GAGGGTTGCGACAGCACATGCTGGGC
* * * ** * * *
21816390 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGCCACCATCG-CTGAAATATCATCAAAAA
65 TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAG-AGCATCACCAGAGA
* * ** *
21816454 ACCTGACCGACGGCATTGAGATTCCGGTGATCGAGGGGGCCGGGGGGTGTGCACACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
21816519 AATGGGTGTTGGTACTTGGCCCTTTTATT
193 GATGGGTGCTGGCACTTGGCCCTTATATT
21816548 CTGCAAGCCA
Statistics
Matches: 1790, Mismatches: 190, Indels: 68
0.87 0.09 0.03
Matches are distributed among these distances:
891 2 0.00
892 115 0.06
893 73 0.04
894 295 0.16
895 315 0.18
896 204 0.11
897 198 0.11
898 244 0.14
899 167 0.09
900 159 0.09
901 18 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (890 bp):
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCACCAGAGAAC
CTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGAT
GGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTCGAAAAAATTTT
AAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGTAGAAATATGAAGATGTGCCTAAACCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGCAGTAGCAGGATCAGTAGGACACAGAG
GGGGACCCGACGATCCCCGGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGC
Found at i:21817934 original size:26 final size:26
Alignment explanation
Indices: 21817898--21817950 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21817888 GTTGACTTAG
21817898 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21817924 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
21817950 G
1 G
21817951 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21819727 original size:26 final size:26
Alignment explanation
Indices: 21819691--21819743 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21819681 CTTGACTTTG
* *
21819691 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
21819717 GCATACGGAGTTAATTCCCAATCTAA
1 GCATACGGAGTTAATTCCCAATCTAA
21819743 G
1 G
21819744 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAATCTAA
Found at i:21820591 original size:26 final size:26
Alignment explanation
Indices: 21820561--21820611 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21820551 GTTGACTTAG
21820561 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
21820587 GCATACGGAGTTCATTTCCAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
21820612 CGATCGGACC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:21821050 original size:892 final size:890
Alignment explanation
Indices: 21819832--21822309 Score: 3152
Period size: 892 Copynumber: 2.8 Consensus size: 890
21819822 ACCATCGTCG
* * *
21819832 GACGGCATTGGGGTTCCAGCGATCAGGCGGGTC-GGGGGTGTGGGCACATGATGTGCGATGGGTG
1 GACGGCATT-GGGTTCCAACGATC-GG-GGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
21819896 CTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
21819961 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
128 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
21820026 TTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATACCA
193 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCA
* * * * * * * *
21820091 ACAAAAATAGAAGTATCACGTCTCCCATGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTAAAAA
258 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
21820156 AATCCCGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
323 AATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
21820221 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCAATAAAAATGG-ATTTGGCATG
388 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA-TTGGCACG
* * **
21820285 CAAAAATATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTGCGCATCTTGT
452 CAGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* ** * * *
21820350 CTCTCTGGCTGGTGTAGTGCCCGCCCGCCCGCTCGTTTCGTTGGTTGCCTTAGGCATACAGAGTT
517 CTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * * * **
21820415 CATTCCAAGTCTAAGATTAGACAAGACTGAGGGTTGCAGCAGTGGGATCGGCAGCACGTAGAACA
582 CATTCCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAAGG
* * * * **
21820480 GGACCCGATTGATCCCCGGCTTAAGCATCCCGCCCCTCTTG-CAGCTGAGCGCCTGCACGCTTAT
647 GGACCCGATCGATCCCCGGCTTAAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGT
* *
21820544 TTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTTCCAGT
712 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
* * * * * * * *
21820609 CTACGATCGGACCAGATCGATGGTTGCGGTAGTAGATTCTGGGCTCAGGCATGTGCTGGTGCCGC
777 CTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTC-GGCATGTGCTGGTGCCGC
21820674 ATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACTGGAGAACCTGACC
841 ATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCA-TGGAGAACCTGACC
* * *
21820725 GACGGCATTAGGGTTCCAACGATAGGGGGGCTGGGGGTGTGCGCACATGATGTGCAATGGGTGCT
1 GACGGCATT-GGGTTCCAACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* *
21820790 GGTACTTGGCACTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * *
21820855 GAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACCCTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
*
21820920 TTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAA
195 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAA
* * *
21820985 AAAAATACAAGGATCACGTCTACCAAGCTTGGCGCCAAAACTCTTTCCGAAAAAATTTTAAAAAA
260 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
* * *
21821050 TCCCAAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
325 TCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* *
21821115 TCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAG
390 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
21821180 AAATATGAAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCTCGTCTC
455 AAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * *
21821245 TCTAGCCGACGTAGTGCCCACCCGCCCGCCCACTCGTTTCATCGGTTGGCTTAGGCATACGGAGT
520 TCTGGCCGACGTAGTG----CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * * * * * **
21821310 TAATTCCCAGTCTAAGATCAGATTGGA-TCGAGGGTTGTGGCAGCAGGATCGGTAACACACAG-A
581 TCATTCCCAGTCTAAGATCAGACTAGACT-GAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAA
* * * * * *
21821373 GAGGGACTCGACCGATACCCGACTTACA-CATCCCGCCCCTCTGGCCGGCTGAGCTCCCGTACGC
645 G-GGGACCCGATCGATCCCCGGCTTA-AGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * *
21821437 TCGTTTCGTGGGTTTACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTAATTCC
708 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
*
21821502 CAGTCTAAGATCAAACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTG
773 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTC-GGCATGTGCTGGTG
* *
21821567 CCGTATTTTTCTTCGTTGGGGCA-C--CATC---G-----T-------C-G---
837 CCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCATGGAGAACCTGACC
* **
21821599 GACGGCATTGGGTTCCAGCGATCGGGGTGGTCGGGGGGGTGTGAACACATGATGTGCGATGGGTG
1 GACGGCATTGGGTTCCAACGATCGGGG-GG-C-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
21821664 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACACACACCCCCTTA
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* *
21821729 AAGAGTATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
128 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
21821794 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTATGCACGCCA
193 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCA
* * * *
21821858 ACAAAAATACAAGAATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAATTTTCAAA
258 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * * * *
21821922 AATCTCGAACCAT-AAAAGTTTCAGAAATCGTGAAGAATAGAGAACAAGTCGTCTTGCCATGAAA
323 AATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
21821986 CTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
388 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGC
* * * * *
21822051 AGAAATATGAAGATCTACCTAGACCCACCTACCACCCTCTCGATCCATGGCTTACGCATCCCGTC
453 AGAAATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
21822116 TCTCTGGCCGACGTAGTACCCGCCCGTCCGCCCACCTGCTCGTTTTGTCAGTTGGCTTAGGCATA
518 TCTCTGGCCGACGTAGT----GCCCG-CC-CGC-CC-GCTCGTTTCGTCGGTTGGCTTAGGCATA
* ** * * * * *
21822181 CGGAGTTCA-TCCGTAGTCTAAGATTGGA-TAGGACTGAGGGTTGCGGTAGCAAGATCAGCAGTA
575 CGGAGTTCATTCC-CAGTCTAAGATCAGACTA-GACTGAGGGTTGCGGCAGTAGGATCGGCAGCA
* * * * * * * * * *
21822244 TGCAG-AGGGGCACCCGACCGATCCTCGGTTTACGTATTCTGCCCCTCTGGCCAGCTGAGCGCCC
638 CGTAGAAGGGG-ACCCGATCGATCCCCGGCTTAAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC
21822308 GC
702 GC
21822310 CTGTTGTCGC
Statistics
Matches: 1386, Mismatches: 173, Indels: 68
0.85 0.11 0.04
Matches are distributed among these distances:
873 199 0.14
874 36 0.03
875 64 0.05
876 203 0.15
877 116 0.08
878 2 0.00
885 1 0.00
891 5 0.00
892 462 0.33
893 22 0.02
894 4 0.00
895 2 0.00
896 120 0.09
897 150 0.11
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (890 bp):
GACGGCATTGGGTTCCAACGATCGGGGGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
AATATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACTAGACTGAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGAAGGGGAC
CCGATCGATCCCCGGCTTAAGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGCATGTGCTGGTGCCGCATTTT
TCTTCGTCGGGGCACCATCATCGGAGCATCATGGAGAACCTGACC
Found at i:21821487 original size:26 final size:26
Alignment explanation
Indices: 21821458--21821510 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21821448 GTTTACTTAG
*
21821458 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
*
21821484 GCATATGGAGTTAATTCCCAGTCTAA
1 GCATACGGAGTTAATTCCCAGTCTAA
21821510 G
1 G
21821511 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAATTCCCAGTCTAA
Found at i:21823078 original size:26 final size:27
Alignment explanation
Indices: 21823049--21823099 Score: 95
Period size: 26 Copynumber: 1.9 Consensus size: 27
21823039 CGATCTTAGA
21823049 TGGGAATGAACTCCGTATG-CTAAGAC
1 TGGGAATGAACTCCGTATGCCTAAGAC
21823075 TGGGAATGAACTCCGTATGCCTAAG
1 TGGGAATGAACTCCGTATGCCTAAG
21823100 TCAACCCACG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (27 bp):
TGGGAATGAACTCCGTATGCCTAAGAC
Found at i:21823445 original size:26 final size:26
Alignment explanation
Indices: 21823408--21823460 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
21823398 CCAGTTCGAT
21823408 CTTAGATCGGGAATGAACTCCGTATG
1 CTTAGATCGGGAATGAACTCCGTATG
* *
21823434 CTTAGA-CTGGGAATGAATTTCGTATG
1 CTTAGATC-GGGAATGAACTCCGTATG
21823460 C
1 C
21823461 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCCGTATG
Found at i:21824331 original size:26 final size:26
Alignment explanation
Indices: 21824295--21824347 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21824285 CCGGTCTGAT
*
21824295 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21824321 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21824347 C
1 C
21824348 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21825092 original size:895 final size:890
Alignment explanation
Indices: 21823362--21827575 Score: 5400
Period size: 895 Copynumber: 4.7 Consensus size: 890
21823352 TTCATATTTC
* * * * *
21823362 TGCCCGTGCCCAGCATGTGCTGCCGTAACCCTCAATCCAGTTCGATCTTAGA-TCGGGAATGAAC
1 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAATCCGATCTTAGACT-GGGAATGAAC
* * * *
21823426 TCCGTATGCTTAGACTGGGAATGAATTTCGTATGCCTAAGTCAACCCATGAAACGAGCGTGAGGG
65 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
** * * * * ** * * * *
21823491 TACTCAGTCGGCCAGAAGGGTAGGATGCGTAAATCGAGGATCGATCGAGTCCCCCTCTACATGCT
130 CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCT
* * * *
21823556 GCCGATCCTGCTGCCACAGCCCTCGGTCCGGTTTGATCTTAGACTGGGAATCAACTCCGTATGCC
195 GCCGATCCTGCTGCCACAACCCTCGGTCTGGTCT-ATCTTAGACTGGGAATGAACTCCGTATGCC
*
21823621 TAAGCCAACCGACGAAACGAG-TA---GGCGGGCAGGCGGGCACTACGCCAGCCAGAGAGATC-G
259 TAAGCCAACCGACGAAACGAGCGAGCGGGCGGGC-GGCGGGCACTACGCCAGCCAGAGAGA-CGG
* * * * * ***
21823681 GACGCATAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTCTATGTG
322 GATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
* * *
21823746 CCAATGCCATTTTTATGGCTCGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAA-TCTGC
387 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT-TTC
* *
21823810 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAA-TTTTTAAGGTTTGAGATTTTTT
451 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTTGGGATTTTTT
* * * * * *
21823874 TAAATTTTTTTAGATGGATTTTTGGCCCCAAACTTGGTAGACGTGATCATTGTATTTTTTTTGGC
516 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGC
*
21823939 ATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
581 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
* * *
21824004 TCACCATTTCAGACACTTTAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAG
646 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG
* * * *
21824069 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCTAAGTGCCATCACC
711 GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACC
* * * ** * *
21824134 CATCGTACACCATGTGCGCACACCCACCC-GGCCCCCCGATCGACGGAACCTCAATGTCGCCGGT
776 CATCGCACATCATGTGCGCACACCC-CCCGGGCCCCCCGATCGTCAAAACCCCAATGCCGCCGGT
* *
21824198 CAGGTTCTCCGACGATGGTGCCCCGGTGAAAAAAAATACAGCACCAGCACA
840 CAGGTTCTCCGACGATGGTGCCCCGATGAAGAAAAATACAGCACCAGCACA
** * * ** *
21824249 TGTTCGAGCCCAGCATGTGCTACCGCAAACCTCGATCCGGTCTGATCTTAGACTGGGAATGAACT
1 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACT
* * * *
21824314 TCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGC
66 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *
21824379 ACTCAGCCGGCCAGAGGGACAGGATGCGTAAGCCGGGGATCGACCGGGTCCCCCTCT-CTGTGCT
131 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGC-GTGCT
** ** * * * * *
21824443 GCCGATGTTGCTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGTAACGAACTTCGTACGCC
195 GCCGATCCTGCTGCCACAACCCTCGGTCTGGTCT-ATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
21824508 TAAGCCAACCGACGGAACGAGTGGGCAGTCGGGCGGGCAGGCGGGCACTATGCCAGCCAGAGAGA
259 TAAGCCAACCGACGAAACGA--GCG-AG-CGGGCGGGC-GGCGGGCACTACGCCAGCCAGAGAGA
* * * * * *
21824573 TGGGATGCACAAGCCATGGATCGATAGGGTTGTAGGTGGGTTTAGTCACGTCTTCATATTTCTAC
319 CGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
* * *
21824638 GTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCTCTTAAGCCTTCACGTGAAGTT
384 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
21824703 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTT
449 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTTGGGATTTT
* *
21824768 TTAAAATTTTTTTGGAAGGAGTTTT-GCCCCAAACTTGGTAGATGTGATCCTTCTATTTTTGTTG
514 TTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * * * *
21824832 GGATGCACAAAACAATTCAGCTAAAAAATTGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAA
579 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
*
21824897 TGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
644 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* * * *
21824962 AGGGGGTGTGATTTCTCAAGGCTTGATGAGGGATAGGGGGCCAATATAAGGTCCTAGTACCAGCA
709 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * * *
21825027 CCCATCCCAAATCTTGTGTGCACACCCCCCGGGCCCCCTGATCGTCAGAACCCCTATGCCGCCGG
774 CCCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGATCGTCAAAACCCCAATGCCGCCGG
* *
21825092 TCAGGTTCTCCGATGATGGTGCCCCGATGAAGAAAAATACAGCACCAACACA
839 TCAGGTTCTCCGACGATGGTGCCCCGATGAAGAAAAATACAGCACCAGCACA
* * ** *** *
21825144 TGCCCGAGCACAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTCTTCTGGGAATGAATT
1 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACT
* * * *
21825209 TCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACTCACGAAACGAGCGCGCGGGC
66 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * * *
21825274 GCTCAGTCGGCCAGAGGGGCGGGATACGGAAGCCGGGGATCGGCCAGGTCCCACTCTGCGTGCTG
131 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTG
* * * *
21825339 CCAATCCTGCCGCCACAACCCCCAGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTATGCCT
196 CCGATCCTGCTGCCACAACCCTCGGTCTGGT-CTATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
21825404 AAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGGCGGGCACTACGCC-GACCGGAGAGACGGG
260 AAGCCAACCGACGAAACGAGCGAGCGGGCGGGC-GGCGGGCACTACGCCAG-CCAGAGAGACGGG
** * * *
21825468 ATGTGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTGCATTC
323 ATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
* *
21825533 CATTGCCATTTTTATGGCTTGTAAAGTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
388 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * * *
21825598 GGCAAGATGACTCGTTTTTTATTTTTCACGA-TTTTCAAAACTTTTTACGGTTTGGGATTTTTGA
453 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTC-AAACTTTTTACGGTTTGGGATTTTTTA
* *
21825662 AAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGTA
517 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
21825726 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
582 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
*
21825791 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
647 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * * * *
21825856 GGGTGTGAGTTCTCAAGATTTGATGGGGGATAGGGGGCCCATAAAAGGGCCAAGTACCAGTACCC
712 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
21825921 ATCGCACATCATGTGTGCACACCCCCCTCGGCCCCCCTGATCGTCAAAACCCCAATGCCGTCGGT
777 ATCGCACATCATGTGCGCACACCCCCC-GGGCCCCCC-GATCGTCAAAACCCCAATGCCGCCGGT
** * *
21825986 CAGGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCAGGCACCAGTACA
840 CAGGTTCTCCGACGATGGTGCCCCGATGAAGAAAAATACA-GCACCAGCACA
* * * * * *
21826038 T-CGTCGAGCCCAACATGTGCTACCACAACCCTC-AGTCCTATCCGATCTTAGTCTGGGAATGAA
1 TGC-CCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCCAATCCGATCTTAGACTGGGAATGAA
* * *
21826101 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGTGCGCGG
64 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * *
21826166 GCGCTCAGCC-GCCAGAGGGGCAGGATGCGCAAGTCGAGGATCGACCAGGTCCCCCTCTGCATCC
129 GCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGC
* *
21826230 TGCCGATCCTGCTGCCGCAACACTCGGTCTGGTCCTATCTTAGACTGGGAATGAACTCCGTATGC
194 TGCCGATCCTGCTGCCACAACCCTCGGTCTGGT-CTATCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
21826295 CTAAGCCAACCGATGAAACGAGCGAACGGGC-GGC--CGGGCACTACGCCGGCCAAAGAGACAGG
258 CTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGCGGGCACTACGCCAGCCAGAGAGACGGG
* **
21826357 ATGCACAAGCTGTGGATCGATAGGGTGGTAGGTCAGTTTAGGCACATC-TCTATATTTCTGCATG
323 ATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC-ATATTTCTGCATG
* * * *
21826421 CCATTGCCATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCG
387 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * ** * ** *
21826486 TGGCAAGAAGACTCGTTTTCTATTTTTCACGA-TTTTCAAAAATTTTAGCTGTTCAGGATTTTTG
452 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTA-CGGTTTGGGATTTTTT
* *
21826550 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAATTTAGTAGACGTGATGCC-TGTATTTTT-TTGG
516 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT-CCTTGTATTTTTGTTGG
*
21826613 TATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
580 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* * * *
21826678 GTCCCCATTTCAAAAACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAA
645 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
*
21826743 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
710 GGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * * * *
21826808 CCATTGCACATCATGTGCGCACACCCCCCCGTCCCCCCGATCGCCAAAACCCCAATGCCACCGGT
775 CCATCGCACATCATGTGCGCACACCCCCCGGGCCCCCCGATCGTCAAAACCCCAATGCCGCCGGT
*** *
21826873 CAGGTTCTCCGACGATGCTCTGGTGATGGTGCCCCGATGAAGAAAAATGTGGCACTAGCACA
840 CAGGTTCT-C--CGA----C----GATGGTGCCCCGATGAAGAAAAATACAGCACCAGCACA
* * * *
21826935 TGCCCGAGCCCAGCATGTGTTGTCGCAACCCTTGATCCAATCCAATCTTAGACTGGGAATGAACT
1 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACT
* * * ** *
21827000 CCTTATGCTTAGACTGGGAATGAACTCTGTATGCCTAACTCAACCCATAAAACGAGCGTGCAGGC
66 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * ** * * *
21827065 GCTCACCCGACCAGAGGGGCGGGATGCACAAGCTGAGGATCGGTCGGGTCCCCTTCTGGGTACTG
131 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTG
* * *
21827130 CCGATCCTGCTACCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCCT
196 CCGATCCTGCTGCCACAACCCTCGGTCTGGT-CTATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
21827195 AAGCCAATCGACG-AA--A-CGAGCGGGC--G-GGCGGGCACTACACCGGCCAGAGAGACGGGAT
260 AAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGCGGGCACTACGCCAGCCAGAGAGACGGGAT
* * *
21827253 GCGCAAGCCGTGGATC-AGTGGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCATGCC
325 GCACAAGCCGTGGATCGA-TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
* *
21827317 AATGCCATTTTTATGACTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
389 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * * *
21827382 GCAAGACGACTCTTTTTCTTTTTTTCATGA-TTTTCGAAAGTTTTTGCAGTTTGGGATTTTTTAA
454 GCAAGACGACTCGTTTTCTATTTTTCATGATTTTTC-AAACTTTTTACGGTTTGGGATTTTTTAA
* * * *
21827446 AATTTTTTCGAAAGAAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCAT
518 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
**
21827511 GCACAAAAACAA-TCAGCTAAAAACTTAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
583 GCACAAAAA-AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
21827575 C
647 C
21827576 TGATCTTAGA
Statistics
Matches: 2915, Mismatches: 361, Indels: 94
0.86 0.11 0.03
Matches are distributed among these distances:
886 1 0.00
887 266 0.09
888 19 0.01
889 409 0.14
890 76 0.03
891 451 0.15
892 11 0.00
893 198 0.07
894 372 0.13
895 803 0.28
896 44 0.02
897 125 0.04
898 140 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAATCCGATCTTAGACTGGGAATGAACT
CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCGTGCTG
CCGATCCTGCTGCCACAACCCTCGGTCTGGTCTATCTTAGACTGGGAATGAACTCCGTATGCCTA
AGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGCGGGCACTACGCCAGCCAGAGAGACGGGATG
CACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAA
TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
AAGACGACTCGTTTTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTTGGGATTTTTTAAAAT
TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCCGGGCCCCCCGATCGTCAAAACCCCAATGCCGCCGGTCAGGTT
CTCCGACGATGGTGCCCCGATGAAGAAAAATACAGCACCAGCACA
Found at i:21826113 original size:26 final size:26
Alignment explanation
Indices: 21826084--21826136 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21826074 CCTATCCGAT
*
21826084 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21826110 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21826136 C
1 C
21826137 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21828121 original size:570 final size:563
Alignment explanation
Indices: 21827049--21828145 Score: 1563
Period size: 570 Copynumber: 1.9 Consensus size: 563
21827039 TCAACCCATA
*
21827049 AAACGAGCGTGCAGGCGCTCACCCGACCAGAGGGGCGGGATGCACAAGCTGAGGATCGGTCGGGT
1 AAACGAGCGTGCAGGCGCTCACCCGACCAGAGGGGCGGGATGCACAAGCTGAGGATCGGTCGAGT
* ** * *
21827114 CCCCTTCTGGGTACTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAA
66 CCCCCTCTACGTACTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCAATCTTAGACTGGAAA
* * *
21827179 TGAACTCTGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGGCACTACACCGGCCAGAG
131 TGAACTCTGTATGCCCAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACACCGGCCAGAG
* * *
21827244 AGACGGGATGCGCAAGCCGTGGATCAGTGGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTC
196 AGACGGGATGCGCAAGCCGTGGATCAGTAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTC
* *
21827309 TGCATGCCAATGCCATTTTTATGACTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAA
261 TGCATGCCAATGCCATTTTTATGACTTGTAAATTCAAACAACGATCCCTTAAGCCTTCACGTGAA
* * ** *
21827374 GTTTCATGGCAAGACGACTCTTTTTCTTTTTTTCATGATTTTCGAAAGTTTTTGCAGTTTGGGAT
326 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTTGCAGTTCGGGAT
*
21827439 TTTTTAAAATTTTTTCGAAAGAAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTG
391 TTTTTAAAATTTTTTCGAAAGAAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTG
* * * *
21827504 TTGGCATGCACAAAAACAATCAGCTAAAAACTTAAAGTGTACAAGATTTTGTGACCATTTGAAAA
456 TTGGCATACACAAAAACAATCAGCTAAAAAATCAAAGTGTACAAGATTTTGAGACCATTTGAAAA
21827569 AAGTGTCTGATCTTAGACTGGGAATGAAAAAAGTCAACACACG
521 AAGTGTCTGATCTTAGACTGGGAATGAAAAAAGTCAACACACG
* * * * * **
21827612 AAACGAGCGTGCGGGCGCTCAGCTGGCTAGAGGGGCGGGATGCGTAAGCTGAGGATCGGTCGAGT
1 AAACGAGCGTGCAGGCGCTCACCCGACCAGAGGGGCGGGATGCACAAGCTGAGGATCGGTCGAGT
* ** ** *
21827677 CCCCCTCTACGTACTGCCGATCCTGCTGCCATGACCCTCGGTCCGGTCTGATCTTAGATTGGAAA
66 CCCCCTCTACGTACTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCAATCTTAGACTGGAAA
** * * **
21827742 TGAGTTC-GTATGCCCAAGGCAACCGATGAAATGAGCGGGAGGGCGGACGGGCGGGCACTATGCC
131 TGAACTCTGTATGCCCAAGCCAACCGACG-AA--A-C--GA--GCGGACGGGCGGGCACTACACC
*
21827806 GGCCAGAGAGATGGGATGCGCAAGCCGTGGATC-GATAGGGTGGTAGGTGGGTCTAGGCACATCT
188 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAG-TAGGGTGGTAGGTGGGTCTAGGCACATCT
** * * * *
21827870 TCATATTTCTGTGTGGCAATGCCATTTTTATGGCTTGTAAATTCATACAACGATTCCTTAAGCCT
252 TCATATTTCTGCATGCCAATGCCATTTTTATGACTTGTAAATTCAAACAACGATCCCTTAAGCCT
*
21827935 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACATTTTG-A
317 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTTGCA
* * **
21827999 TGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCACCAAACTTGGTAGATGTGATCCT
382 -GTTCGGGATTTTTTAAAATTTTTTCGAAAGAAGTTTTGGCACCAAACTTGGTAGACATGATCCT
*
21828064 TGTATTTTTGTTGGCATACACAAAAA-AATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGAGA
446 TGTATTTTTGTTGGCATACACAAAAACAA-TCAGCTAAAAAATCAAAGTGTACAAGATTTTGAGA
21828128 CCATTTGAAAAAAGTGTC
510 CCATTTGAAAAAAGTGTC
21828146 CCCATTTCAG
Statistics
Matches: 467, Mismatches: 56, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
562 17 0.04
563 118 0.25
565 1 0.00
566 1 0.00
568 2 0.00
569 4 0.01
570 324 0.69
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (563 bp):
AAACGAGCGTGCAGGCGCTCACCCGACCAGAGGGGCGGGATGCACAAGCTGAGGATCGGTCGAGT
CCCCCTCTACGTACTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCAATCTTAGACTGGAAA
TGAACTCTGTATGCCCAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTACACCGGCCAGAG
AGACGGGATGCGCAAGCCGTGGATCAGTAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTC
TGCATGCCAATGCCATTTTTATGACTTGTAAATTCAAACAACGATCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTTGCAGTTCGGGAT
TTTTTAAAATTTTTTCGAAAGAAGTTTTGGCACCAAACTTGGTAGACATGATCCTTGTATTTTTG
TTGGCATACACAAAAACAATCAGCTAAAAAATCAAAGTGTACAAGATTTTGAGACCATTTGAAAA
AAGTGTCTGATCTTAGACTGGGAATGAAAAAAGTCAACACACG
Found at i:21828474 original size:26 final size:26
Alignment explanation
Indices: 21828445--21828497 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21828435 CCGGTCTAAT
21828445 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21828471 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
21828497 C
1 C
21828498 CAAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:21828812 original size:12 final size:12
Alignment explanation
Indices: 21828795--21828819 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
21828785 TGCCAATGCC
21828795 ATATAAGGGCCA
1 ATATAAGGGCCA
21828807 ATATAAGGGCCA
1 ATATAAGGGCCA
21828819 A
1 A
21828820 GTACCAGCAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.24, T:0.16
Consensus pattern (12 bp):
ATATAAGGGCCA
Found at i:21830596 original size:714 final size:710
Alignment explanation
Indices: 21829141--21830604 Score: 2165
Period size: 714 Copynumber: 2.1 Consensus size: 710
21829131 CCTGCTACCG
* * * *
21829141 CAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACCAA
*
21829206 ACGAGCGGGCGAGTGGGCACTACGTCAGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGC
66 ACGAGCGGGCGAGCGGGCACTACGTCAGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGC
* * *
21829271 GTGGTAGGTGGGTTTAGGCACATCATCATATTTCTGCGTGCCAATGCCATTTTTATGGTTTGTAA
131 GTGGTAGGTAGGTTTAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
*
21829336 ATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
196 ATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTCTTCTATTT
* * ** *
21829401 TTCACGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTGTTTCGGAAGGAGTTTTGGC
261 TGCACGATTTTCAAAACTCTTTGTGGTTCAAGATTTTTTAAAATTGTTTCGAAAGGAGTTTTGGC
* * * *
21829466 CCCAAACTTGGTAGACGTGTTCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
326 CCCAAACTTGATAGACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAAC
21829531 ACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
391 ACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
21829596 ACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGCTTGATG
456 ACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGCTTGATG
**
21829661 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCC
521 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCCCACACCCC
* * * * *
21829726 CCGGCCCCCCCGATCATCGAAACCCCAATGTCGTCGGTCAGGTTCTCCTACGATACTCCGGCGAT
586 CCGGCACCCCCGATCATCGAAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATACTCCGACGAT
21829791 GGTAACCCGCCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCA
651 GGTAACCCGCCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCA
** * *
21829851 CAACCCTCCATCC-AGTCTGATCTTCGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACCA
1 CAACCCT-CGGCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACCA
* *
21829915 AACGAGCGGGC-AGGCGGGCGGGTACTACGTCGGCCAGAGAGACGTG-ATGCGCAATCCGTGGAT
65 AACGAGCGGGCGA-GCGGGC----ACTACGTCAGCCAGAGAGACG-GAATGCGCAAGCCGTGGAT
* * *
21829978 CGATAGGGTGGTAGGTAGGTTTAGGCATATC-TCCATATTTCTGCATGCCAATGCCATTTTTATT
124 CGATAGCGTGGTAGGTAGGTTTAGGCACATCAT-CATATTTCTGCATGCCAATGCCATTTTTATG
* * *
21830042 GCTTGTAAATTCATACATTGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTC
188 GCTTGTAAATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTC
* ** *
21830107 TTCTATTTTGCATGATTTTTGAAACTCTTTGTGGTTCAAGATTTTTTAAAATTTTTTC-AAATGG
253 TTCTATTTTGCACGATTTTCAAAACTCTTTGTGGTTCAAGATTTTTTAAAATTGTTTCGAAA-GG
21830171 AGTTTTGGCCCCAAACTTGATAGACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCA
317 AGTTTTGGCCCCAAACTTGATAGACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCA
*
21830236 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-AAAGAAAGTGTCCCCATTTCAGACAC
382 GCTAAAAACACGAAGTGTACAAGATTTTGTGACCATTTGAAA-AAAGTGTCCCCATTTCAGACAC
* *
21830300 TTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAAGG-GGTGTGAGTTCTT
446 TTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTT-AAGGAGGTGTGAGTTCTC
* * * * *
21830364 GAGGTTTGATGAGGGATAGGGGGTCGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
510 AAGGCTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
* * *
21830429 GCCCCCACCCCTCGGCACCCCCGATCATCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGAT
575 GCCCACACCCCCCGGCACCCCCGATCATCGAAACCCCAATGCCGTCAGTCAGGTTCTCCGACGAT
* * * ** *
21830494 GCTCCGATGATGG-AGCCC-CAGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGTATG
640 ACTCCGACGATGGTAACCCGC--CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATG
*
21830557 TGCTG-CTG
703 TGCTGTC-A
* ** *
21830565 TAACCCTCGGCCTGGTCCAATCTTAGACTGGGAATAAACT
1 CAACCCTCGGCCTGGTCTGATCTTAGACTGGGAATGAACT
21830605 TTTTGTGGTT
Statistics
Matches: 672, Mismatches: 67, Indels: 26
0.88 0.09 0.03
Matches are distributed among these distances:
709 1 0.00
710 69 0.10
711 2 0.00
712 1 0.00
713 14 0.02
714 580 0.86
715 5 0.01
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.27
Consensus pattern (710 bp):
CAACCCTCGGCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGACCAA
ACGAGCGGGCGAGCGGGCACTACGTCAGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGC
GTGGTAGGTAGGTTTAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
ATTAATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTCTTCTATTT
TGCACGATTTTCAAAACTCTTTGTGGTTCAAGATTTTTTAAAATTGTTTCGAAAGGAGTTTTGGC
CCCAAACTTGATAGACATGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAAC
ACGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
ACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGCTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCCCACACCCC
CCGGCACCCCCGATCATCGAAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATACTCCGACGAT
GGTAACCCGCCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCA
Found at i:21831096 original size:26 final size:26
Alignment explanation
Indices: 21831060--21831112 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
21831050 CCGATCTGAT
21831060 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21831086 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
21831112 C
1 C
21831113 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21831845 original size:26 final size:26
Alignment explanation
Indices: 21831807--21831859 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21831797 CTGGTCCAAT
21831807 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
21831833 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
21831859 C
1 C
21831860 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:21832730 original size:26 final size:26
Alignment explanation
Indices: 21832694--21832746 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21832684 CCGATCCGAT
21832694 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
21832720 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
21832746 C
1 C
21832747 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:21832998 original size:887 final size:888
Alignment explanation
Indices: 21831146--21833851 Score: 3819
Period size: 887 Copynumber: 3.0 Consensus size: 888
21831136 AGGCGGGCAG
* ** * * * *
21831146 GCGGGCGGGCGAGCACTGTGTCGGCCTGAGAGACGGGATGCGCAAGCCATGAATCGATAGGGTGG
1 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTATGGATCGATAGGGTGG
* * *
21831211 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATCGCTTGTAAATTC
66 TAGGTGGGTTTAGGCACATCTTCATATTTTTTCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
21831276 ATACAATGGACCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT-T
131 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
21831340 TGATTTTTGAAACTTTTTGCGGTCCGGGATTTTTTAAAATTTATTCAGAAGGCA-TTTTGGCCCC
196 TGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCC
* *
21831404 AAACTTGGTAGACGTGATCCTTGTATTTTTGGTGGCACGCACAAAAAAATTCAGCTAAAAACTCG
260 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
21831469 AAGTGTACAAGATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
325 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
21831534 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
390 GGCAGCAAACCTGTAAAATCTCAAA------TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * ** *
21831599 GATAGGGGGTCGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCCCCCA-CCCCTC
449 GATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCC
* * * *
21831663 GGCAACCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCGATGATGG
513 GGCACCCCCGATCGTAGGAACCCCAATGCCGTCAGTCAGGTTCTCCGGCGATGCTCCGACGATGG
* * * *
21831728 AGCCCC-AGCGAAGAAAAATGTGGCCCCAGCACATGCCCGAGCTCAGTATGTGCTG-CTGTAACC
578 TGCCCCGA-CGAAGAAAAATGTGGCACCAGCACATGCCCGAGC-CAGCATGTGCTGTC-GCAACC
* * * *
21831791 CTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGT
640 CTCGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGT
* * * *
21831856 ATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGCCCGCCAGAGGGCCGGGATGCGCA
705 ATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGGGCTCAGCCGGCCAGAGGGGCGGGATGCGC-
* * * ** * *
21831921 AACCAGGGG-TCACGT-GGGTCCCCCTCTACGTGCTGTCGATCCTGTTGCCA-CAACCCT-CAGT
769 AAGCTGGGGATC-GGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTG-CAGCAACCCTCCA-T
* * * * *
21831982 CTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATAAAACGA
831 CTAGTCTAAACTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGA
* * * **
21832040 GCGGGCGGGCGGGCACTACGTCAGCTAGAGAGACGGGATATGCAAG-TCATGGATCGATAGGGTG
1 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCT-ATGGATCGATAGGGTG
*
21832104 GTAGGTGGGTTTAGGCACATCTTCATATTTTTTCGTCCCAATGCCATTTTTATGGCTTGTAAATT
65 GTAGGTGGGTTTAGGCACATCTTCATATTTTTTCGTGCCAATGCCATTTTTATGGCTTGTAAATT
21832169 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
130 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
** * *
21832234 ACAATTTTTGAAACTATTTGCGGTTCGGGA-TTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCC
195 ATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * *
21832298 AAACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTTAGCTAAAAACTCG
260 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
21832363 AAGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
325 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
21832428 GGCAGCAAACCTGTAAAATCTC-AA-TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
390 GGCAGCAAACCTGTAAAATCTCAAATTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * **
21832491 GGCCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCATACCCCCCCGGGTCC
455 GG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGCACC
* * * *
21832556 CCCGATCGTAGGAACCCCAATGCCGCCAATCAGGTTCTCCGGCGTTGCTCTGACGATGGTGCCCC
519 CCCGATCGTAGGAACCCCAATGCCGTCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC
* ** * *
21832621 GACGAAGAAAAATGCGATAACAGCACATGCTCGAGCCAAGCATGTGCTGTCGCAACCCTCGGTCC
584 GACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC-AGCATGTGCTGTCGCAACCCTCGGTCC
* *
21832686 GATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTTGTATGCCTCA
648 GATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
* * *
21832751 GTCAACCCATTAAACGAGCGTGCGGGGGCTCAGCCGGCCAGAGGGGCAGGATGTGCAAGCTGGGG
713 GTCAACCCATGAAACGAGCGTGCGGGGGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGG
* * * *
21832816 ATCGGTCGGGTCCCCCTCTGTGTCCTACCGATCCTGCTGTAGCAACCCTCCATCTAGTCTAACCT
778 ATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCAGCAACCCTCCATCTAGTCTAAACT
* *
21832881 TAGACTAGCAATGAACTCCGTATACCTAAGCCAACCAATGAAACGA
843 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGA
* * * * *
21832927 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGCATGCGTAAGCTGTGGATCGATGGGGTGA
1 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTATGGATCGATAGGGTGG
* *
21832992 TAGGTGGGTTTAGGCAAATCTTCATATTTCTAT-GTGCCAATGCCATTTTTATGGCTTGTAAATT
66 TAGGTGGGTTTAGGCACATCTTCATATTT-TTTCGTGCCAATGCCATTTTTATGGCTTGTAAATT
21833056 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
130 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
21833121 ATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCGC
195 ATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * ** * * *
21833186 AAACTTGGTCGACGTGATCTTTGTATTTTTTTTGATATGCACAAAAACATTCAGCTAAAAAATCA
260 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
21833251 AAGTGTACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAAACACTTTAATGGCTACT
325 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
21833316 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGATTGATGAGG
390 GGCAGCAAACCTGTAAAATCTCAAA------TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * *
21833381 GATAAAGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTGCGTAAACCCCCCT
449 GAT-AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCC
* * *
21833446 GGCCCCCCCGATCGTTGGAACCCCAATGCCGTCAGTCAGGTTCTCCGGCGATGCTCCAACGATGG
513 GGCACCCCCGATCGTAGGAACCCCAATGCCGTCAGTCAGGTTCTCCGGCGATGCTCCGACGATGG
*
21833511 TGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGC--T-GCAACCCT
578 TGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCC-AGCATGTGCTGTCGCAACCCT
* * **
21833573 CGGTCCAATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACACCGTAT
642 CGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTAT
* *
21833638 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGGGCTCAGCTGGCCAGAGGGG-GGGATGCGCAAG
707 GCCTAAGTCAACCCATGAAACGAGCGTGCGGGGGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * * *
21833702 CTGGGGATCGGTCAGGTCCTCCTCTGTGTGCTGCCAATCCTGCTGCAGCAACCCTCCATCCAGTC
772 CTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCAGCAACCCTCCATCTAGTC
* * *
21833767 TAAACTTAGACTAGGAGTGAACTCCGTATGCCTAAGCCAACCAACGAAATGA
837 TAAACTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGA
* *
21833819 GCGGCCAGGCGGGCACTACGCCGGCCAGAGAGA
1 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGA
21833852 TAGGGTGTGA
Statistics
Matches: 1617, Mismatches: 171, Indels: 50
0.88 0.09 0.03
Matches are distributed among these distances:
885 4 0.00
886 91 0.06
887 512 0.32
888 176 0.11
889 2 0.00
892 145 0.09
893 119 0.07
894 350 0.22
895 25 0.02
896 189 0.12
897 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTATGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTTTTCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
TGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGCACCCC
CGATCGTAGGAACCCCAATGCCGTCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCAGCATGTGCTGTCGCAACCCTCGGTCCGAT
CCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
AACCCATGAAACGAGCGTGCGGGGGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATC
GGTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCAGCAACCCTCCATCTAGTCTAAACTTAG
ACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGA
Found at i:21833623 original size:26 final size:26
Alignment explanation
Indices: 21833587--21833639 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21833577 CCAATCTGAT
**
21833587 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
21833613 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
21833639 C
1 C
21833640 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:21834333 original size:501 final size:499
Alignment explanation
Indices: 21833353--21834338 Score: 1350
Period size: 501 Copynumber: 2.0 Consensus size: 499
21833343 CTCTTTAAGG
*
21833353 GGGTGTGAGTTCTCGAGGATTGATGAGGGATAAAGGGCCAATATAAGGGCTAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGATTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * **
21833418 ATCGCACATCATGTGCGTAAACCCCCCTGGCCCCCCCGATCGTTGGAACCCCAATGCCGTCAGTC
66 ATCACACATCATGTGCGCAAACCCCCCCGACCCCCCCGATCGTCAGAACCCCAATGCCGTCAGTC
21833483 AGGTTCTCCGGCGATGCTCCAACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCC
131 AGGTTCTCCGGCGATGCTCCAACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCC
* * *
21833548 CGAGCCTAGCATGTGCTGCAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTTCGTATG
196 CGAGCCTAGCATGTGCTGCAACCCTCGGTCCAATCTGATCTTAAACTAGGAATGAACTCCGTATG
* *
21833613 CTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGGGCTCAGC
261 CTTAGACAGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGGGCTCAGC
* * * ** *
21833678 TGGCCAGAGGGGGGGATGCGCAAGCTGGGGATCGGTCAGGTCCTCCTCTGTGTGCTGCCAATCCT
326 CGGCCAGAGGGGGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTACGTGCTACCAATCCT
* *
21833743 GCTGCAGCAACCCTCCATCCAGTCTAAACTTAGACTAGGAGTGAACTCCGTATGCCTAAGCCAAC
391 GCTCCAGCAACCCTCCATCCAGTCTAAACTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
*
21833808 CAACGAAATGAGCGGCCAGGCGGGCACTACGCCGGCCAGAGAGATA
456 CAACGAAACGAGCGG-C-GGCGGGCACTACGCCGGCCAGAGAGATA
* **
21833854 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
1 GGGTGTGAGTTCTCGAGGATTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
21833919 ATCACACATCATGTGCGCACACCCCCCCGACCCCCCTGATC-TCCAGAACCCCAATGTCG-CTAG
66 ATCACACATCATGTGCGCAAACCCCCCCGACCCCCCCGATCGT-CAGAACCCCAATGCCGTC-AG
* * * **
21833982 TCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATG
129 TCAGGTTCTCCGGCGATGCTCCAACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATG
* **
21834047 CTCGAG-CTCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAAACTAGGAATGAACTC
194 CCCGAGCCT-AGCATGTGCT---GCAACCCTCGGTCCAATCTGATCTTAAACTAGGAATGAACTC
* * * * * *
21834111 CGTATGTTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGTGTACGGGTG
255 CGTATGCTTAGACAGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGGG
*
21834176 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTAC
320 CTCAGCCGGCCAGAGGGG-GGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTACGTGCTAC
* * * ** * * * * *
21834241 CGATCCTGTTACCA-TAACCCTCGGTCCTGTCTGATCTTAGACTTGGAATGAACTTCGTATGCCT
384 CAATCCTGCT-CCAGCAACCCTCCATCCAGTCTAAACTTAGACTAGGAATGAACTCCGTATGCCT
**
21834305 AAGCCAACTGACGAAACGAGCGGGCGGGCGGGCA
448 AAGCCAACCAACGAAACGAGC-GGC-GGCGGGCA
21834339 GACGGGCACT
Statistics
Matches: 421, Mismatches: 55, Indels: 14
0.86 0.11 0.03
Matches are distributed among these distances:
500 4 0.01
501 186 0.44
504 111 0.26
505 116 0.28
506 4 0.01
ACGTcount: A:0.24, C:0.29, G:0.28, T:0.19
Consensus pattern (499 bp):
GGGTGTGAGTTCTCGAGGATTGATGAGGGATAAAGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCACACATCATGTGCGCAAACCCCCCCGACCCCCCCGATCGTCAGAACCCCAATGCCGTCAGTC
AGGTTCTCCGGCGATGCTCCAACGATGGTGCCCAGACGAAGAAAAATGTGGCACCAGCACATGCC
CGAGCCTAGCATGTGCTGCAACCCTCGGTCCAATCTGATCTTAAACTAGGAATGAACTCCGTATG
CTTAGACAGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGGGCTCAGC
CGGCCAGAGGGGGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTACGTGCTACCAATCCT
GCTCCAGCAACCCTCCATCCAGTCTAAACTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
CAACGAAACGAGCGGCGGCGGGCACTACGCCGGCCAGAGAGATA
Found at i:21835900 original size:26 final size:26
Alignment explanation
Indices: 21835871--21835923 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21835861 TCAATCCGAT
*
21835871 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21835897 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21835923 C
1 C
21835924 CGAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21836092 original size:26 final size:26
Alignment explanation
Indices: 21836056--21836108 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21836046 TCGGTCTGAT
*
21836056 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
21836082 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
21836108 C
1 C
21836109 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:21836191 original size:185 final size:185
Alignment explanation
Indices: 21835868--21836262 Score: 551
Period size: 185 Copynumber: 2.1 Consensus size: 185
21835858 GGTTCAATCC
* *
21835868 GATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCGAAATCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCGAAATCAA
* * * * *
21835933 CCCACGAAATAAGTGTACGGGCGCTTAGCCGGCCAGAAGCACGGGATGCGCAAGCCGGGGATCAG
66 CCCACGAAACAAGCGTACGGGCGCTCAGCCAGCCAGAAGCACGGGATGCGCAAGCCAGGGATCAG
** * ** *
21835998 TTGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGTAACCCTCAGTTC-GGTCT
131 CCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTC-GATCTGGTCT
* * * *
21836053 GATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCTGTATGCCTAAGTTAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCGAAATCAA
* * ** *
21836118 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAAGGGCGGGATGCGTAAGCCAGGGATC-G
66 CCCACGAAACAAGCGTACGGGCGCTCAGCCAGCCAGAAGCACGGGATGCGCAAGCCAGGGATCAG
21836182 ACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGATCTGGTCT
131 -CCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGATCTGGTCT
*
21836238 GATGTTAGACTGGGAATGAACTCCG
1 GATCTTAGACTGGGAATGAACTCCG
21836263 CATACCTAAG
Statistics
Matches: 185, Mismatches: 23, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
184 4 0.02
185 181 0.98
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.21
Consensus pattern (185 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCCGAAATCAA
CCCACGAAACAAGCGTACGGGCGCTCAGCCAGCCAGAAGCACGGGATGCGCAAGCCAGGGATCAG
CCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGATCTGGTCT
Found at i:21836991 original size:26 final size:26
Alignment explanation
Indices: 21836940--21836992 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21836930 CCGGTCCGAT
*
21836940 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
21836966 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
21836992 C
1 C
21836993 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:21837870 original size:889 final size:870
Alignment explanation
Indices: 21836079--21837703 Score: 2360
Period size: 889 Copynumber: 1.8 Consensus size: 870
21836069 TGAACTCCGT
* * * * *
21836079 ATGCTTAAACTGGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAAAGAGCGTGCGGGCGCTC
* *
21836144 AGCCAGCCAGAAGGGCGGGATGCGTAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGA
66 AGCCAGCCAGAAGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTACATGCTGCCGA
*
21836209 TCCTGCTGCCACAACCCTCGATCTGGTCTGATGTTAGACTGGGAATGAACTCCGCATACCTAAGC
131 TCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGCATACCTAAGC
* * * *
21836274 CAACTAACGAAACGAGTTGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
196 CAACCAACGAAACGAGGTGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCAT
* * * *
21836339 GGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATACCATTTTT
261 GGATCAATAGGGTGGTAGGTGGGATGAGGCACATATTCATATTTCTACATGCCAATAACATTTTT
*
21836404 ATGCCTTATAAATCCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
326 ATGCCTTATAAATCCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTC
*
21836469 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAA
391 GTTTTATATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAA
21836534 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATT
456 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATT
* *
21836599 CAGCTAAAAACTCAAAGTGTGCAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACA
521 AAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * * *
21836664 CTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
586 CTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATCCTCTTTAAGGGGGAGTGAGTTCTC
* * *
21836729 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGT
651 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGT
*
21836794 GTGCACACCCCCCGGCCCCCCCGATCACCGGAACCACAATGTCGTCGGTCAGGTTCTCCGGCGAT
716 GTGCACACCCCCCGGCCCCCCCGATCACCGGAACCACAATGTCGTCGGTCAGGTTCTCCGACGAT
* * * * * * *
21836859 GGTGCCCCGGCGAAGAAAAATGTGGCACCAGCCCATGCCCAAGCCCTGGATGTGCTGCCGCAACC
781 GGTGCCCCGGCAAAGAAAAATGTGCCACCAGCACATGCCCAAGCCCAGCATGTGCTACCACAACC
*
21836924 CTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCAT
846 C---GTCCGG--CG---TT--ACTGGG-AT--ACTT-AG
21836963 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAAAGAGCGTGCGGGCGCTC
1 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAAAGAGCGTGCGGGCGCTC
* * * * *
21837028 AGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTC-AGCATGCTGCCG
66 AGCCAGCCAGAAGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTA-CATGCTGCCG
** * * * *
21837092 ATCCTGCTGCTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
130 ATCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGCATACCTAAG
* * * *
21837157 CCAACCAACGAAAGGAGCGGGTGGACGGGCTGGCGGGCACTGCGCCGGCCAGAGAGGCGTGATGC
195 CCAACCAACGAAACGA---GGTGG-C--G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGC
* *
21837222 GCAAGCCATGGATCGATAGGGTGGTAGGTGGGATGAGGCACATATTCATATTTCTACGTGCCAAT
252 GCAAGCCATGGATCAATAGGGTGGTAGGTGGGATGAGGCACATATTCATATTTCTACATGCCAAT
* * * * *
21837287 AACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAACCTTCATGTGATGTTT-ATGGCA
317 AACATTTTTATGCCTTATAAATCCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCA
***
21837351 AGACGACTCGTTTTATATTTTTCATGA-TTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATT
382 AGACGACTCGTTTTATATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATT
** *
21837415 TTTTCGGAAGGAGTTTTGG-CCCTGACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
447 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCAC
* * *
21837479 AAAATAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAATAAAA-TGTCCCC
512 AAAAAAATTAAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAA-AAAAGTGTCCCC
* *
21837543 ATTTCAGACACTTTAATGGCTATTGGTAACAAACCTATAAAATCTCAAATCCTCTTTAAGGGGGA
576 ATTTCAGACACTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATCCTCTTTAAGGGGGA
*
21837608 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCAACCATCG
641 GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCG
21837673 CACATCATGTGTGCACACCCCCCGGCCCCCC
706 CACATCATGTGTGCACACCCCCCGGCCCCCC
21837704 AATCGTTGGA
Statistics
Matches: 669, Mismatches: 62, Indels: 15
0.90 0.08 0.02
Matches are distributed among these distances:
883 1 0.00
884 187 0.28
887 4 0.01
888 1 0.00
889 246 0.37
890 58 0.09
891 32 0.05
892 140 0.21
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (870 bp):
ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAAAGAGCGTGCGGGCGCTC
AGCCAGCCAGAAGGGCGGGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTACATGCTGCCGA
TCCTGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGCATACCTAAGC
CAACCAACGAAACGAGGTGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCAT
GGATCAATAGGGTGGTAGGTGGGATGAGGCACATATTCATATTTCTACATGCCAATAACATTTTT
ATGCCTTATAAATCCATACAATGGTCCCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTATATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAATT
AAGCTAAAAACTCAAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAACAAACCTATAAAATCTCAAATCCTCTTTAAGGGGGAGTGAGTTCTC
AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAACCATCGCACATCATGT
GTGCACACCCCCCGGCCCCCCCGATCACCGGAACCACAATGTCGTCGGTCAGGTTCTCCGACGAT
GGTGCCCCGGCAAAGAAAAATGTGCCACCAGCACATGCCCAAGCCCAGCATGTGCTACCACAACC
CGTCCGGCGTTACTGGGATACTTAG
Found at i:21838443 original size:26 final size:26
Alignment explanation
Indices: 21838414--21838466 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21838404 CCGGTCCAAT
*
21838414 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21838440 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21838466 C
1 C
21838467 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21839334 original size:26 final size:26
Alignment explanation
Indices: 21839298--21839350 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21839288 CCGGTCCGAT
21839298 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
*
21839324 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
21839350 C
1 C
21839351 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:21840091 original size:17 final size:17
Alignment explanation
Indices: 21840071--21840104 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
21840061 CCCCCCCGAT
21840071 CGTCGGAACCCCAATGC
1 CGTCGGAACCCCAATGC
*
21840088 CGTCGGTACCCCAATGC
1 CGTCGGAACCCCAATGC
21840105 ATCCATTCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.21, C:0.41, G:0.24, T:0.15
Consensus pattern (17 bp):
CGTCGGAACCCCAATGC
Found at i:21841126 original size:26 final size:26
Alignment explanation
Indices: 21841086--21841138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21841076 CCGGTCCGAT
21841086 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
21841112 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
21841138 C
1 C
21841139 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:21842373 original size:876 final size:875
Alignment explanation
Indices: 21837866--21844526 Score: 7907
Period size: 874 Copynumber: 7.5 Consensus size: 875
21837856 TTAGACTGGG
* *
21837866 AATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATG
1 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
21837931 GCAAGACGACTCATTTTATATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAA
66 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA
* * *
21837996 ATTTTTTCAGAAGGAGTTTTGCCCCCAAACTTGGTAGACGTGATCCATGAATTTTTGTTGGCATG
131 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* * * *
21838061 CACAAAAAAATTTAGCTAAAAACCCGAAGTGAACAAGATTTTGTGACCATTTGAAAAAGGTGTCC
196 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
21838126 CCATTTCAGACACATTAATGGCTACTGGTAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGG
261 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
21838191 GTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
326 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * * * * * *
21838256 CGCACATCATGTGCGCAC-TCCCCCTGGCCCGCCCGATCGCCGGAACCCTAATGCCGCCGGTCAA
391 CGCACATCATGTGCGCACACCCCCCCGCCCCCCCCGATCGTCGGAACCCCAATGCC-CCAGTCAG
*** **
21838320 GTTCTCCGACAATGGTGCCCCGGTAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATG
455 GTTCTCCGGTGATGGTGCCCCGGCGAAGAAAAATAC-G---C-G--CA-G-CC-AG-----CATG
* * * *
21838385 TGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACTGG
505 TGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGG
* * * *
21838450 GAATGAACTCCGTATGCCTAAGTCAACACACGAAAAGAGCGTGCGGGCGCTCAGTCGGCCAGA--
570 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGG
* * * * *
21838513 GG-GG-TG-G-GAG-C---GA---GTC----CCCCTCAGCGTGCTGTCGATCTTGCTACTGCAAC
635 GGCGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAAC
* * *
21838563 CCTTGGT-TCGATTCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAAGG
700 CCTTGGTCT-GATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* * * *
21838627 AGCGGGCGGGCGGGCTAGCG-GGG-ACTACGTCGACCAGAGAGGCGGGATGCACAAGCCGTGGAT
764 AGCGGGCGGGCGGGC-AG-GAGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGAT
21838690 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
827 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
* *
21838739 AATGACATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATG
1 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * ** *
21838804 GGAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTATGGTTCGTGATTTTTTAAA
66 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA
** *
21838869 A-TTTTT-AGAAGGAGTTTTGGCCCTGAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG
131 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
21838932 CATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAATAAAA-TGTC
196 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA-AAAAGTGTC
* * *
21838996 CCCATTTCATACACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAAGGG
260 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
21839061 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCA
325 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
21839126 TCACACATCATGTGCGCACACCCCCCCGGCCCCCCCCGATCGTCGGTACCCCAATGCATCCAGTC
390 TCGCACATCATGTGCGCACACCCCCCC-GCCCCCCCCGATCGTCGGAACCCCAATGC-CCCAGTC
* *
21839191 AGGTTCTCCGACAATGCTCCGATGATGGTGCCTCGGTGAAGAAAAATGTGCCACCAGCACATGCC
453 AGGTTCT-C--C---G----G-TGATGGTGCCCCGGCGAAGAAAAA--T---A-C-G--C--G--
* * * **
21839256 CGAGCCTAGCATGTGCTGCCGTAACCCTCGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCCT
494 C-AGCC-AGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCAGT
* * *
21839321 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGGCGCTC
557 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTC
* * * * * * *
21839386 AGCCGGCCAGAGGGGTGGGATGCACAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAA
622 AGTCGGCCAGAGGGG-CGGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTGCGTGCTGTCGA
* * * * ** * *
21839451 TCCTACTGCTGCAACCCTTGGTCCGGTCTGATCTTAAAGTGGGAATGAACTCCGTATGCCTAAGC
685 TCCTGCTGCCGCAACCCTTGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * * *
21839516 CAACCGACGAAACGAACAGGTGGGCAGGCGGGCGGGCACTACGCCGGCCAAAGACACGGGATGCG
750 CAACCGACGAAACGAGCGGGCGGGCGGGCAGGAGGGCACTACGCCGACCAAAGAGACGGGATGCG
21839581 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
815 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
* * *
21839642 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGCTTTCACATGAAGTTTCATG
1 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * *
21839707 GCAAGACTACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAA
66 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA
*
21839772 ATTTTTTC-GAAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
131 ATTTTTTCAG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
21839836 GCACAAAAAAATTCAGCTAAAAACTCAAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTC
195 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
**
21839901 CCCATTTTGGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
260 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * ** *
21839966 GTTGTGAGTGCTTGAGGTTTGATGAGGGATAGGGGGCCAATATTGGGGCCAAGTGCCAGCACCCA
325 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
21840031 TCACACATCATGTGCGCACACCCCACCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTA
390 TCGCACATCATGTGCGCACACCCC-CCCGCCCCCCCCGATCGTCGGAACCCCAA-----T--G--
*
21840096 CCCCAATGCATCCATTCAAGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAATG
445 CCCC-A-G-------TC-A-------GGT--T-CTCCGGTGATGGTGCCCCGGCGAAGAAAAA--
* * * * *
21840161 TGCCACCAACACATGCCCGAGCCCAGCATGTGCTACTGCAACCGTCGGTCCGGTCCGATCTTAGA
488 T---------AC--GCGC-AG-CCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGA
** * *
21840226 CTGGGAATGAACTCCA-TATGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTGAACCCATGAA
540 CTGGGAATGAACT-CAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
** * *
21840290 ACGA--G--C--GTG--CA-T----C---TTGG-GGAT-TG--A-TC---G---GGTC----CCC
604 ACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCGGATGCGCAAGCCGGGGATCGGTCGGGTCCC
* * * * * ** * *
21840324 CTCTGTGTGCTGGCGATCCTGTTGCCACAACCATCAGTCCGGTCCAATCTTAGACTGGGAATGAA
669 CTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTGATCCAATCTTAGACTGGGAATGAA
* * * * *
21840389 CTCTGTATTCCTAAGCCAACCCAACAAAACGAGCGGGCGGGCGGGCCGGTGGACGGGCAGGCACT
734 CTCCGTATGCCTAAGCCAA-CCGACGAAACGAGCGGGCGGGCGGG-C--AGGA---G--GGCACT
* * * *
21840454 ACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
790 ACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
21840519 ATCTTCATATTTCTACATGCC
855 ATCTTCATATTTCTACGTGCC
*
21840540 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATG
1 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
21840605 GCAAGACAACTCATTTTCCATTTGTCACGATTTTT-AAATCTTTTTGCGGTTCGGGATTTTTTAA
66 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTGCGGTTCGGGATTTTTTAA
* * *
21840669 AATTTTTTCAAAAGGAATTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
130 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* **
21840734 GCACAAAAAAATTCAGCTAAAAACTCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAACGTC
195 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
21840799 CCCATTTAAGACACTTTAATGGCTACTGGCAGTAAACTTGTAAAATCTCAAATGCTCTTTAAGGG
260 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
21840864 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
325 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
21840929 TCACACATCATGAGCG--CACGCCCCCG-GCCCCCCGGTCG-CAGGAACCCCAATGCCGCCAGTC
390 TCGCACATCATGTGCGCACACCCCCCCGCCCCCCCCGATCGTC-GGAACCCCAATGCC-CCAGTC
* **
21840990 AAGTTCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCA
453 AGGTTCTCCGGTGATGGTGCCCCGGCGAAGAAAAAT-----A-C-G--C--G--C-AG-CCAGCA
* * * *
21841055 TGTACTGCCCCAACCCTTGATCCGGTCCGATCTTAGACTGGAAATGAACTCCA-TATGCTTAGAC
503 TGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACT-CAGTATGCTTAGAC
* * * * *
21841119 TGGGAATGAACTCCGTATGCCTAAGTCAACCTATGAAACAAGCGTGCGGGCGCTCAGTCGGCCAG
567 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAG
* * * ** * *
21841184 AGGGGCGGGATGCGCAAGCCGGGGGTCGGTCGGGTCCCCCTTTGCATGCTACCGATCTTGCTACC
632 AGGGGC-GGATGCGCAAGCCGGGGATCGGTCGGGT-CCCCTCTGCGTGCTGTCGATCCTGCTGCC
** *
21841249 GCAACCCTTGGTCTGATCTGATCTTCA-ATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
695 GCAACCCTTGGTCTGATCCAATCTT-AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * * * * **
21841313 AAACGAGCGAGCGGGCAGACGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGTACAAGCCGTG
759 AAACGAGCGGGCGGGCGGGCAGGAGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTG
* * **
21841378 GATCGATAGGGTGGTGGGTGGGTTTCGGCACATCTTCATATTTCTGTGTGCC
824 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
*
21841430 AATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATG
1 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
** * *
21841495 GCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA
66 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA
* * *
21841560 ATTTTTTCGGAAGGCGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTG
131 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
21841625 CACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
196 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
21841690 CAATTTCACACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
261 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
21841755 GTGTGAGTTCTCGAGGTTTGATGAGGGATTGGCGGCCAATATAAGGGCCAAGTACCAGCACCCAT
326 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
21841820 CGCACATCATGTGTGCACACCCCCCCGACCGCCCCGATCGTCGGAACCCCAATGGCCCCAGTCAG
391 CGCACATCATGTGCGCACACCCCCCCGCCCCCCCCGATCGTCGGAACCCCAAT-GCCCCAGTCAG
*
21841885 GTTCTCCGGTGATGGTGCCCCGACGAAGAAAAATACG-GCA-CCAGCATGTGCTGCCGCAACCCT
455 GTTCTCCGGTGATGGTGCCCCGGCGAAGAAAAATACGCGCAGCCAGCATGTGCTGCCGCAACCCT
* ** * * * *
21841948 TGGTCTGGTTTGATCTTACACTGGGAATGAA-TGAAGTACGCTTAGACTGGGAATGACCTCCGTA
520 TGGTCCGGTCCGATCTTAGACTGGGAATGAACT-CAGTATGCTTAGACTGGGAATGAACTCCGTA
*
21842012 TGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCGCGATGCACAA
584 TGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCG-GATGCGCAA
* ** * * **
21842077 GCCGGGGATCGATCGACTCACCCTCTGCGTGCTGTCGATCCTGCTGTCGTAACCCTCAGTCTGAT
648 GCCGGGGATCGGTCGGGTC-CCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTGAT
* * *
21842142 CCAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAAACGAGCGGACGGGCGG
712 CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG
* *
21842207 GCAGGAGGGCACTACACCGACCAAAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGG
777 GCAGGAGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
21842272 TGGGTTTAGGCACATCTTCTTATTTTTATGTTCC
842 TGGGTTTAGGCACATCTTCATATTTCTACGTGCC
*
21842306 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATG
1 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
21842371 GCAAGACAACTCATTTTCCATTTGTCACGATTTTT-AAATCTTTTTGCGGTTCGGGATTTTTTAA
66 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTGCGGTTCGGGATTTTTTAA
* * * *
21842435 AATTTTTTCAAAAGAAATTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
130 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
21842500 GCACAAAATAAA-TGAGCTAAAAAATCTAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
195 GCACAAAA-AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* *
21842564 CCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGG
259 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* * *
21842629 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCGCCC
324 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * ** *
21842694 ATCGCACATCATGTGCACACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAAACGCGTCGGTC
389 ATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCCGATCGTCGGAACCCC-AATGCCCCAGTC
* ** * * * * *
21842758 AGATTCTCCGACGATGGTGCCTCGACGAAGAAAAAT-CG-ACA-CCAGCATGTGCTACCGGAACC
453 AGGTTCTCCGGTGATGGTGCCCCGGCGAAGAAAAATACGCGCAGCCAGCATGTGCTGCCGCAACC
** * * *
21842820 CTTGGTCCGGTTTGATCTTACACTGGGAATGAACTAAGTATGCTTAGACTGGGAATGACCTCCGT
518 CTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCGT
* * *
21842885 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCCGGCTAGAGGGGCGCGATGCGTA
583 ATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCG-GATGCGCA
* * * * *
21842950 AGCCGGGGATCGATCGGGTCACCCTCTGCGTGATATCGATCCTGCTGTCGTAACCCTTGGTCTGA
647 AGCCGGGGATCGGTCGGGTC-CCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTGA
* * *
21843015 TCCGATCTTAGACTGGGAATTAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
711 TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
*
21843080 GGCAGGAGGGCACTATGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
776 GGCAGGAGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* * * *
21843145 GTTGGTTTAGGCACATCTTCATATTTGTACATTCC
841 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
*
21843180 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCACGTGAAGTTTCATG
1 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * **
21843245 GCAAGACAACTCGTTTTCCATTTTCCATAATTTTT-AAATCTTTTTGCGGTTCGGGATTTTTTAA
66 GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA-CTTTTTGCGGTTCGGGATTTTTTAA
*
21843309 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTT
130 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * *
21843374 GCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTC
195 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
21843439 CCCATTCCAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGG
260 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
21843504 GGTGTGAGTTTTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCA
325 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * *
21843569 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCCGATCATCGAAACCCCAATGCCGTC-GATT
390 TCGCACATCATGTGCGCACACCCCCCCGCCCCCCCCGATCGTCGGAACCCCAATGCC-CCAG-TC
* *
21843633 AGGGTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGACACCATCACATGCC
453 AGGTTCT-C--CG--G-T-----GATGGTGCCCCGGCGAAGAAAAATACG---------C--G--
* ** ** * * *
21843698 CGAGCCCAGCATGTGCTACCGCAACCCTTGGTCCAATTTGATCATACACTGGGAATGAACTAAGT
494 C-AG-CCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCAGT
* *
21843763 ACGCTTAGACTGGGAATGACCTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTC
557 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTC
*** * * * * *
21843828 CCCCGACCAGAGGGGCGTGATGTGCAAGCCGAGGATCGGTCGGGTCGCCCTCTGCATGCTATCGA
622 AGTCGGCCAGAGGGGCG-GATGCGCAAGCCGGGGATCGGTCGGGTC-CCCTCTGCGTGCTGTCGA
* *
21843893 TCCTGCTGCCGCAACCCTCGGTCTGATCCAATTTTAGACTGGGAATGAACTCCGTATGCCTAAGC
685 TCCTGCTGCCGCAACCCTTGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * *
21843958 CAACCGATGAAACGAACGGGCGGGCGGGCAGGAGAGCACTACGCCGACCAAAGAGACGGGATGTG
750 CAACCGACGAAACGAGCGGGCGGGCGGGCAGGAGGGCACTACGCCGACCAAAGAGACGGGATGCG
* *
21844023 CAAGCCGAGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCC
815 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCC
* *
21844084 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCTTGAAGCCTTCATGTGAAGTTTCAA
1 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCACGTGAAGTTTCAT
* * * *
21844148 GGCAGGATGACTCGTTTTTTATTTTTCACGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAA
65 GGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAA
* * **
21844213 AATTTTTTCGGAAGGTG-TTTGGCCCCAAACAAGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
130 AATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* *
21844277 GCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTC
195 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * *
21844342 CCCATTTCAGACACTTTAATCGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTTTTTAAGGG
260 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
** * *
21844407 GGTGTGAGTTCTTAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCGA
325 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * *
21844472 TCGCACATCATGTGCGGACA-CCCCCTGGCGCCCCCGATCGTCGGAACCCCAATGC
390 TCGCACATCATGTGCGCACACCCCCCCGCCCCCCCCGATCGTCGGAACCCCAATGC
21844527 TGCCGTTCTG
Statistics
Matches: 5053, Mismatches: 544, Indels: 353
0.85 0.09 0.06
Matches are distributed among these distances:
860 4 0.00
861 1 0.00
862 1 0.00
864 1 0.00
866 130 0.03
867 1 0.00
868 1 0.00
869 2 0.00
870 1 0.00
871 246 0.05
872 15 0.00
873 159 0.03
874 752 0.15
875 95 0.02
876 699 0.14
877 4 0.00
878 3 0.00
879 3 0.00
881 1 0.00
882 2 0.00
884 149 0.03
885 4 0.00
886 27 0.01
887 5 0.00
888 4 0.00
889 81 0.02
890 480 0.09
891 8 0.00
892 10 0.00
893 61 0.01
894 32 0.01
895 8 0.00
896 6 0.00
897 5 0.00
898 481 0.10
899 66 0.01
900 1 0.00
901 3 0.00
902 35 0.01
903 542 0.11
904 483 0.10
905 277 0.05
906 5 0.00
909 1 0.00
910 1 0.00
912 1 0.00
913 2 0.00
914 4 0.00
915 1 0.00
916 2 0.00
918 1 0.00
920 1 0.00
922 126 0.02
923 5 0.00
926 1 0.00
927 2 0.00
928 3 0.00
930 4 0.00
932 2 0.00
933 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAA
ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCCGCCCCCCCCGATCGTCGGAACCCCAATGCCCCAGTCAGG
TTCTCCGGTGATGGTGCCCCGGCGAAGAAAAATACGCGCAGCCAGCATGTGCTGCCGCAACCCTT
GGTCCGGTCCGATCTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCGGATGCGCAAGCC
GGGGATCGGTCGGGTCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCTGATCCAA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCAG
GAGGGCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTACGTGCC
Found at i:21845174 original size:26 final size:26
Alignment explanation
Indices: 21845132--21845182 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
21845122 GGTCCGATCC
* *
21845132 TAGACTGGTAATGAACTCCATATGCT
1 TAGACTGGGAATAAACTCCATATGCT
*
21845158 TAGACTGGGAATAAACTCTATATGC
1 TAGACTGGGAATAAACTCCATATGC
21845183 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATAAACTCCATATGCT
Found at i:21846684 original size:902 final size:887
Alignment explanation
Indices: 21844910--21847802 Score: 3627
Period size: 902 Copynumber: 3.3 Consensus size: 887
21844900 CAAAACTTTT
* *
21844910 TGTGAGTTCTCGGGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
21844975 GTACATCATATGC-CACACACCCCCAGGCCCCCCCGATCGCCGACACCCCAACGTCGTCGGTCAG
66 GCACATCATATGCGCACAC-CCCCC-GG--CCCCCGATCACCGACACCCCAATGCCGTCGGTCAG
* *
21845039 G-T-TCT-T---TGATGATGCCCCGACGAAGAAAAATACGGCAGCAGCACATGCCCGAGCCCAGC
127 GTTCTCTGTCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* ** * * * *
21845098 ATGTGCTACCATAACCCTCGGTCCGGTCCGATCCTAGACTGGTAATGAACTCCATATGCTTAGAC
192 ATGTGCTGCCGCAACCCTCGATCCGCTCCGATCCTAGACTGGCAATGAACTCCGTATGCTTAGAC
* * *
21845163 TGGGAATAAACTCTATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCAGCCAG
257 TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCGA-CCAG
* * * * * * * *
21845228 AGAGGCGGGATGCACAAGCCGGGGTTTGATTGGGACCCCCTCTGCGTGCTACCGATCCTGTTGCC
321 AGGGGCGGGATGCGCAAGTCGGGGATCGGTTGGGACCCCCTCTGCGTGCTGCCGATCCTGCTGCC
** * **
21845293 GTAACCCTCGGTTCGATCCAATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGATGA
386 ACAA-CCTCGGTACGATCCAATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGATGA
* * * * **
21845358 AATGAGCGGGCAGGCAGGCAGGCGGGCACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCGTGG
450 AACGAACGGGCGGGCGGGCAGGC-GGCACTA--CCAACCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
21845423 ATCAATAGGGTGGTAGGTGGGTTTAGGCTCATCTTCCTATTTCTACATGCCAATGCCATTTTTAT
512 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
21845488 GGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGT
577 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
21845553 TTTCTTTTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTTAAATTTTTTCAGAAGG
642 TTTCTATTTTTCATGATTTTTGAAA-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* *
21845618 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAAATCA
706 AGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAAATCA
*
21845683 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACT
771 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
21845748 TTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
836 TTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
*
21845800 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
21845865 GCACATCATGTGCGCACAGCCCCTCCGG-TCCCGATCACCGACACCCCAATGCCGCCGGTCAGGT
66 GCACATCATATGCGCACA-CCCC-CCGGCCCCCGATCACCGACACCCCAATGCCGTCGGTCAGGT
* *
21845929 TCTCTGACGATGCCCCGGTGATGGTACCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
129 TCTCT---G-T----CGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
** *
21845994 CCCAGCATGTGCTGTTGCAACCCTCGATCCGCTTCGATCCTAGACTGGCAATGAACTCCGTATGC
186 CCCAGCATGTGCTGCCGCAACCCTCGATCCGCTCCGATCCTAGACTGGCAATGAACTCCGTATGC
* * *
21846059 TTGGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGTC
251 TTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAG-C
* * * *
21846124 GACCAGAGGGGCGGGATGTGCAAGTCGGGGATCGGTCGGGACCCCCTCTGCATGTTGCCGATCCT
315 GACCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTTGGGACCCCCTCTGCGTGCTGCCGATCCT
* * * * *
21846189 GCTACCCCAACCATCGGTAAGATCCAAT-TTAAGACAGGGAATGAACTCCGTATGCCTAAGCCGA
380 GCTGCCACAACC-TCGGTACGATCCAATCTT-AGACTGGGAATGAACTACGTATGCCTAAGCC-A
* * * *
21846253 A-GGACGAAACGAACGGGCGGGCGGGCAGGCGAGCACTCCATCAACCAGAGAGACTGGATGCGCA
442 ACCGATGAAACGAACGGGCGGGCGGGCAGGCG-GCACT--ACCAACCAGAGAGACGGGATGCGCA
** *
21846317 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAACGCC
504 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
21846382 ATTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
569 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGA
*
21846447 TGACTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTTTACGGTTCGGGATTTTTTAAAATTTTT
634 CGACTCGTTTTCTATTTTTCATGATTTTTGAAA-TTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * * *
21846512 TCGGAAGGAGTTTTGGCTCCACACTTGGTAGACGTGATTCTTGTATTTTTGTTGGTATGCACAAA
698 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGTATGCACAAA
*
21846577 AAAAATCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
763 AAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
21846642 CAGATACTTTAATGGCTACTGGGAGTAAACCTATAAAATCTCAAATGCTCTTTGAGGGGG
828 CAGACACTTTAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
*
21846702 TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * *
21846767 ACACATCACATGCGCACACCCCCCTCGGACCCCCGATCGCCTGA-ACCCCAATGCCGTCGGTCAG
66 GCACATCATATGCGCACA-CCCCC-CGG-CCCCCGATCACC-GACACCCCAATGCCGTCGGTCAG
* * *
21846831 GTTCTC--T-GGCGATGGTGCCTCGACGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGC
127 GTTCTCTGTCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* *
21846893 ATGTGCTACCGTAA-CC-C--T-CG----G----T---CT-G----G---TCCG-AT-CTTAGAC
192 ATGTGCTGCCGCAACCCTCGATCCGCTCCGATCCTAGACTGGCAATGAACTCCGTATGCTTAGAC
* * * *
21846932 TGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGTGTGCAGGCGTTCAGCCGACCAT
257 TGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAG-CGACCAG
* * * * *
21846997 AGGGGCGAGATGCGTAAGTC-GGGATCAGTTGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCC
321 AGGGGCGGGATGCGCAAGTCGGGGATCGGTTGGGACCCCCTCTGCGTGCTGCCGATCCTGCTGCC
* * * * * *
21847061 ACAATCCTTGGTCCGGTCCGATCTTAGATTGGAAATGAACTACGTATGCCTAAGCCAACCGATGA
386 ACAA-CCTCGGTACGATCCAATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGATGA
* * * * * * * * *
21847126 AACGTACGGACGGGCGGGCA--C--TAC-GCCAGCCACAGAGACGGGATGCACAAGCCATGGATT
450 AACGAACGGGCGGGCGGGCAGGCGGCACTACCAACCAGAGAGACGGGATGCGCAAGCCGTGGATC
21847186 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
515 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
21847251 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATTGG-AAGACGACTCGTTT
580 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCA-TGGCAAGACGACTCGTTT
* *
21847315 TCTATTTTTCATGATTTTTGAAATGTTTTACGGTTCGGGATTTTTTAAAATGTTTTCGGAAGGAT
644 TCTATTTTTCATGATTTTTGAAAT-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
21847380 TTTTGGCCCCAAACATGGTAGATGTGATCCTTGTATTTTTGTTGGCT-TGCACAAAACAATTCAG
708 TTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGG-TATGCACAAAAAAAATCAG
*
21847444 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTT
772 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* *
21847509 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
837 TAATGGCTACTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
* * * **
21847560 TGTGAGTTCTTGAGGTATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCACCACTAATC
1 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * ** * *** *
21847625 GCACATCATTTGCGCACACCCCCCGACCCCC--TCGTTCGTC-GGTCAA-GTTC-TCTGG-C--G
66 GCACATCATATGCGCACACCCCCCGGCCCCCGATC-ACCGACACCCCAATG-CCGTC-GGTCAGG
* * * * **
21847682 ATC-CT-CCGGGGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGTGCAGCA
128 TTCTCTGTCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
* * *
21847745 TGTGCTGCCGCAACCCTCTG-TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
193 TGTGCTGCCGCAACCCTC-GATCCGCTCCGATCCTAGACTGGCAATGAACTCCGTATGC
21847803 CTAAGCCAAT
Statistics
Matches: 1742, Mismatches: 195, Indels: 145
0.84 0.09 0.07
Matches are distributed among these distances:
849 1 0.00
850 3 0.00
851 61 0.04
852 6 0.00
853 10 0.01
854 1 0.00
855 6 0.00
856 4 0.00
857 6 0.00
858 447 0.26
859 4 0.00
860 1 0.00
861 2 0.00
864 2 0.00
865 2 0.00
866 99 0.06
867 87 0.05
868 3 0.00
869 4 0.00
872 2 0.00
875 4 0.00
876 3 0.00
877 3 0.00
880 1 0.00
884 1 0.00
888 32 0.02
889 2 0.00
890 76 0.04
891 10 0.01
892 5 0.00
893 60 0.03
895 1 0.00
898 1 0.00
901 6 0.00
902 745 0.43
903 4 0.00
904 35 0.02
905 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATATGCGCACACCCCCCGGCCCCCGATCACCGACACCCCAATGCCGTCGGTCAGGTTC
TCTGTCGGTGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
GCTGCCGCAACCCTCGATCCGCTCCGATCCTAGACTGGCAATGAACTCCGTATGCTTAGACTGGG
AATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCGACCAGAGGGG
CGGGATGCGCAAGTCGGGGATCGGTTGGGACCCCCTCTGCGTGCTGCCGATCCTGCTGCCACAAC
CTCGGTACGATCCAATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGATGAAACGAA
CGGGCGGGCGGGCAGGCGGCACTACCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCATGATTTTTGAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
CCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAAATCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGG
Found at i:21847838 original size:12 final size:12
Alignment explanation
Indices: 21847821--21847851 Score: 53
Period size: 12 Copynumber: 2.6 Consensus size: 12
21847811 ATCGACGAAA
21847821 CGAGCGGACGGG
1 CGAGCGGACGGG
21847833 CGAGCGGACGGG
1 CGAGCGGACGGG
*
21847845 CGGGCGG
1 CGAGCGG
21847852 GCACTACGCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.13, C:0.26, G:0.61, T:0.00
Consensus pattern (12 bp):
CGAGCGGACGGG
Found at i:21849671 original size:25 final size:25
Alignment explanation
Indices: 21849616--21849672 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 25
21849606 TATTTTTCAC
* *
21849616 GATTTTTTAAACTTTTTACGGTTTGG
1 GATTTTTTAAAATTTTTACGG-TAGG
*
21849642 GATTTTTTAAAATTTTTTCGG-AGG
1 GATTTTTTAAAATTTTTACGGTAGG
21849666 GCATTTT
1 G-ATTTT
21849673 GGCCACAAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
24 3 0.11
25 5 0.19
26 19 0.70
ACGTcount: A:0.21, C:0.07, G:0.19, T:0.53
Consensus pattern (25 bp):
GATTTTTTAAAATTTTTACGGTAGG
Found at i:21850840 original size:26 final size:26
Alignment explanation
Indices: 21850804--21850855 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
21850794 CGGTTTGATG
21850804 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
21850830 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
21850856 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:21851737 original size:26 final size:26
Alignment explanation
Indices: 21851701--21851753 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21851691 TTGATCTGAT
21851701 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
21851727 CTTAGACTGGGAATGAATTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21851753 C
1 C
21851754 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21852440 original size:888 final size:884
Alignment explanation
Indices: 21850144--21855273 Score: 5891
Period size: 899 Copynumber: 5.8 Consensus size: 884
21850134 GGGCGGGCGG
* * * *
21850144 GCGGACAGGCGGGCTGGCACTAC-TCCAGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATA-
1 GCGGACGGGCGGGCGGGCACTACGT-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* * * *
21850207 GGTGGTAGGTGGGTTTACGCATATCTTCATATTTCTAG-ATGCCAATGCCATTTTTATGGCTTTT
65 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-GCAGGCCAATGCCATTTTTATGGCTTGT
* * *
21850271 AAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAAGATGACTCATTTTCTAT
129 AAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** ** * * *
21850336 TTTTCTTGATTTTTGAAACTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGG
194 TTTTCACGATTTTTGAAAC-TTT----TTACGG---TTTCAAAATTTTTTCAGAAGGAGTTTTGG
* *
21850401 CCCCAAACTTGGT--A--TGATCCTTGTATTTTTGTTGGTATGCACAAAAAAAATCAGCTAAAAA
251 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
** *
21850462 CTCGAAGTGTACAAGATTTCATGACCATTTG-AAAAAGTGTCCCCATTTCAGATACTTTAATGGC
316 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
21850526 TACTGGGAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGAT
381 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * *
21850591 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATTGCACA-CATGTGCGGACACAC
446 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-C
* ** * ** * * *
21850655 CCCTG-GCCCCCCCGATCACCGGAACCCTAATGCCACCGGTTAGGTTCTGCGACGATGCTCCGAC
510 CCCCGAG--CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGAC
* * * * * * * *
21850719 GATGGTGCCCCAATGAAGAAAAATGTGGCACCAGCTCATTCCCGGGCCCAGTATGTGCTGCCACA
573 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
21850784 ACCCTCGGTCCGGTTTGATGTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
638 ACCCT-GGT---GTCTGATCTTAGACTGGGAATGAA-TCCGTATGCTTAGACTGGGAATGAACTC
* * * *
21850849 CGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGTGCTTAGCCGGCCAAAGGGG-GGGATGT
698 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAAAGGGGCGGGATGC
* * * * * *
21850913 GCAAGCCGAGGATC-AGTCGGGTACCCCTCTACGTGCT-ACTGATCCTACTGTCGTAACCCTCGG
763 GCAAGCCGGGGATCGA-TCGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTGCCGCAACCCTCGG
* * * * *
21850976 TTTGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCTTAAGCCAACCGACGAAACGA
826 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * * *
21851035 GC-GAGCGGGCGGGCAGGCACTATGCCGGCCAGAGTGACGGGATGCGCGAGCCGTGGATCGATAG
1 GCGGA-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
*
21851099 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
65 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTA
* *
21851164 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATT
130 AATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
21851229 TTTCATGATATTTGAAACTTGTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTCG
195 TTTCACGATTTTTGAAACTT-TT----TACG-G---TTTCAAAATTTTTTCAGAAGGAGTTTTGG
* * * * * *
21851294 TCCCAAACTTGGTAGATGTGATCCTTATATTTTTTTTGGCATGCATAAAAAAAATT-TGCTAAAA
251 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCTAAAA
* * *
21851358 ACTCAAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGG
315 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
21851423 CTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGAGGGTGTGAGTTCTCAAGGTTTGA
380 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * *
21851488 TGAGGGATAGGGGACCAATATAAGGGCCAAGTAACAGCACCCATCGCACATCATATGTGCACACC
445 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* *
21851553 CCCCAAAGCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACG
510 CCCC-GAGCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACG
* * * * * *
21851618 ATGGTACCCCGACGAAGAGAAATTCGGCACCAGCACATGCCTGAGCCCAGCATGTCCTGCCACAA
574 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* *
21851683 CCCTTGGTTTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTTC
639 CCC-TGG--TG-TCTGATCTTAGACTGGGAATGAA-TCCGTATGCTTAGACTGGGAATGAACTCC
* * * *
21851748 GTATGCCTAAGTCAACCCACGAAACGAGCG-GACAGGTGCTCAGCCGGCCAAAGGGGCAGGATGC
699 GTATGCCTAAGTCAACCCACGAAACGAGCGTG-CGGGCGCTTAGCCGGCCAAAGGGGCGGGATGC
* * * * **
21851812 GCAAGCTGGGGATCGATCGGGCCCCCCTCTATGTGCTGTCGATCCTGCTGCCACAACCCTCAATC
763 GCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTC
*
21851877 TGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
828 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * *
21851934 GCGGATGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGG
1 GCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
*
21851999 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCGGCCAATGCCATTTTTATGGCTTGTAA
66 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAA
* * * *
21852064 ATTCATGCAATGGGCCCTTAAGCCCTCACATGAAGTTTCCTGGCAAGACGACTCGTTTTCTATTT
131 ATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * ** * *
21852129 TTTATGATTTTCAAAACTTTTTACGG-TTCAGAATTTTTT-AGTAGGAGTTTTGGCCCCAAACTT
196 TTCACGATTTTTGAAACTTTTTACGGTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* *
21852192 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAGTTGAAGTGT
261 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
21852257 ACAAGATTTTTTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGC
326 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
21852322 AAACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
391 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
21852387 GGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACACCCCCCGACCCCA
456 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAGCCC-
* ** * * * * * *
21852452 CCGATCGTCGGAACACCAAAACCGTCGGTCAGGTTTTCTGGTGATGCTCCGGCGATGATGCCCGG
520 CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG
* * * *
21852517 ACGAAGAAAAATGCGGCACCAGCACATGACTGAGCCTAGCATGTGCTGCCGTAA-CC------C-
585 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTGGTGTCT
* * *
21852574 --TC--AGA-T-CG---G--TCCG-AT-CTTAAACTGGGAATGAACTCCATATGCCTAAGTCAAC
650 GATCTTAGACTGGGAATGAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * **
21852626 CCACGAAACGAGTGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGCTCAAGCCGGGGATCGGC
715 CCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* * * *
21852691 CGGGTCCCCCTCTACGTGGTG-CGGATCCTGTTACCGCAACCCTCGGTCCGGTCTGATCTTAGAC
780 CGGGTCCCCCTCTACGTGCTGTC-GATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGAC
* *
21852755 TGGGAATGAACTCCGGATGCTTAAGCCAACCGACGAAACGA
844 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* * * *
21852796 GCGGGGGGGTAGGCGGGCGGGCGGGCATTACGTCGGCCAGAGAGATGGGATTCGCAAGCCGTGTA
1 GC-----GG-A--CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
21852861 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT--ATGTGCCAATGCCATTTTTA
58 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-G-GCCAATGCCATTTTTA
* * * * *
21852924 TGGCTTGTCAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACAACTCA
121 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCG
* * *
21852989 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTAGAAG
186 TTTTCTATTTTTCACGATTTTTGAAACTTTTTA-----C-GG---TTTCAAAATTTTTTCAGAAG
* *
21853054 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTCTTGTTGTCATGCACAAAAAAAGTT
242 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TT
* * * * *
21853119 -AGATAAAAACTCGAAGTGTATACA-ATTTTCTGACCCTTTGAAAAAAGTATCCCCATTTCAGAC
306 CAGCTAAAAACTCGAAGTGTACA-AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* ***
21853182 ACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTCCAAGTTCT
370 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
21853247 CG-GGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
435 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
** * * *
21853311 TGCATACACCCCCC-AGCCCCTTCGATCGTCGGAACCTCAATGTCGTCAGTCAGGTTCTCCGGCG
500 TGCGCACACCCCCCGAGCCCC--CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* ** * * *
21853375 ATGCTCTGGTGATAGTGCCTCGACGAAGATAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
563 ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
** * *
21853440 TGCTAACGCAACCC-----TC-GGTC-----C---G---G--TCCG-AT-CTTAGATTGGGAATG
628 TGCTGCCGCAACCCTGGTGTCTGATCTTAGACTGGGAATGAATCCGTATGCTTAGACTGGGAATG
* * * *
21853484 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGTTTAGCCGGCCAGAGGGGTGG
693 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAAAGGGGCGG
* * * * *
21853549 GATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTACTGCCGCAACCCT
758 GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCT
* * ** * *
21853614 TGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATAAAATGAACG
823 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG-----ACGAA--
21853679 GGCGAGCGGGCGA
881 ----A-----CGA
* * * * * *
21853692 GCGGCCGAGCGAGCGGGTGGGCACTACGTCGGCCAGACAGACGGGATGTGTAAGCCGTAGATCGA
1 GC-G--GA-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
*
21853757 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-GTGCCAATGCCATTTTTGTGGCT
62 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAG-GCCAATGCCATTTTTATGGCT
*
21853821 TGTAAATTCATAAAATGGTCCCTTAAGCCTTCACATTG-AGTTTCATGGCAAGACGACTCGTTTT
126 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACA-TGAAGTTTCATGGCAAGACGACTCGTTTT
* * *
21853885 CTATTTTTCACGATTTTTGAAACTTTTTTATGTTAGGATTTTTAAAATTTTTTTCA-AAGGATTT
190 CTATTTTTCACGATTTTTGAAAC-TTTTTA----CGG--TTTCAAAA-TTTTTTCAGAAGGAGTT
* *
21853949 TTGGCTCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
247 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
* *
21854014 AAAACTCGAAGTGTACAAGATTTAGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAA
312 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
21854079 TAGCTACTGGCAACAAACCTGTAACATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
377 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
21854144 TGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATATGCGCAC
442 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * *
21854209 ACCCCCCCCG-GCCCCCTATCGTCGGAACCCCAACGCCGTCGGTCAAGTTCTCGGGCAATGCTCC
507 A--CCCCCCGAGCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCC
* * *
21854273 GAAGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCC
570 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
*
21854338 GCAACCCTCGGTCTGGTCTGAGCTTAGACTGGGAATGAAATCCGTATGCTTAGACTGGGAATGAA
635 GCAACCCT-GG--T-GTCTGATCTTAGACTGGGAATG-AATCCGTATGCTTAGACTGGGAATGAA
* *
21854403 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTTAGCCGG-CAAGAGGGGCGGG
695 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAA-AGGGGCGGG
* * ** * ** * * *
21854467 ATGCTCAAGCCAGGGATCGA-CTGGGTCCTTCTCTGCGTGCTACCGATCCTGCTACTGCAAACCT
759 ATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCT
** * *
21854531 CATTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
823 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
21854593 GCGTG-CGGGCGGGCGGGCACTACATCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAG
1 GCG-GACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
21854657 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGG-CAATGCCATTTTTATGGGTTGT
65 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-GGCCAATGCCATTTTTATGGCTTGT
* * *
21854721 AAATTCATACAATGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGCAACACAACTCGTTTTCTAT
129 AAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
21854786 TTTTCACAATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTG
194 TTTTCACGATTTTTGAAACTTTTT--A---C-GG---TTTCAAAATTTTTTCAGAAGGAGTTTTG
**
21854851 GCCAGAAACTTGGTAGACGTGATCCTTGTAGTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAA
250 GCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* * * *
21854915 AACTCGAAGTGTACAAGATTTTGTGACCCTTTGAAAAAAATATTCCCCATTTAAGACACTTTAAT
314 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT-GTCCCCATTTCAGACACTTTAAT
* *
21854980 GGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTT
378 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
21855045 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGCGCACA
443 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * *
21855110 CCCCCCG-GCCCCCCCAATCGCCGAAACCCTAATGCCGTCGGTCAGGTTCT-C--C---G----G
508 CCCCCCGAG--CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG
* * * * *
21855164 -CGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAACACAAGCCCAAGCCCAGCATGTGCTGCCG
571 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
21855228 CAACCCTCGGTTCGGTCCGATCTTAGATTGGGAATGAACTCCGTAT
636 CAACCCT-GG-T--GTCTGATCTTAGACTGGGAATGAA-TCCGTAT
21855274 ACCTAAGCCA
Statistics
Matches: 3674, Mismatches: 431, Indels: 270
0.84 0.10 0.06
Matches are distributed among these distances:
861 1 0.00
862 179 0.05
863 3 0.00
864 4 0.00
867 3 0.00
868 1 0.00
869 1 0.00
870 191 0.05
871 1 0.00
872 3 0.00
874 2 0.00
875 1 0.00
876 2 0.00
877 1 0.00
878 1 0.00
879 4 0.00
880 358 0.10
881 183 0.05
882 4 0.00
884 2 0.00
885 4 0.00
887 15 0.00
888 349 0.09
889 107 0.03
890 186 0.05
891 231 0.06
892 331 0.09
893 63 0.02
894 5 0.00
895 1 0.00
896 12 0.00
897 249 0.07
898 375 0.10
899 421 0.11
900 189 0.05
901 7 0.00
906 2 0.00
909 1 0.00
912 5 0.00
915 4 0.00
916 5 0.00
917 167 0.05
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (884 bp):
GCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCAGGCCAATGCCATTTTTATGGCTTGTAA
ATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
TTCACGATTTTTGAAACTTTTTACGGTTTCAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGAGCCCC
CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTGGTGTCTG
ATCTTAGACTGGGAATGAATCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTTAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATC
GGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
Found at i:21854395 original size:26 final size:26
Alignment explanation
Indices: 21854359--21854412 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
21854349 TCTGGTCTGA
21854359 GCTTAGACTGGGAATGAAATCCGTAT
1 GCTTAGACTGGGAATGAAATCCGTAT
*
21854385 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTGGGAATGAAATCCGTAT
21854411 GC
1 GC
21854413 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (26 bp):
GCTTAGACTGGGAATGAAATCCGTAT
Found at i:21857737 original size:26 final size:26
Alignment explanation
Indices: 21857701--21857753 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21857691 CCGGTTCGAT
**
21857701 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAACAAACTCCATATG
21857727 CTTAGACTGGGAACAAACTCCATATG
1 CTTAGACTGGGAACAAACTCCATATG
21857753 C
1 C
21857754 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACAAACTCCATATG
Found at i:21858633 original size:26 final size:26
Alignment explanation
Indices: 21858604--21858654 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
21858594 GGTCCGATCC
21858604 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
21858630 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
21858655 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:21858856 original size:901 final size:892
Alignment explanation
Indices: 21855241--21860360 Score: 6023
Period size: 901 Copynumber: 5.8 Consensus size: 892
21855231 CCCTCGGTTC
* * ** * *
21855241 GGTCCGATCTTAGATTGGGAATGAACTCCGTATACCTAAGCCAACAAACGAAATGAGCGGGTGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * * *
21855306 CGGTCGGGCACTGCGCCGGCCATAGAGACGGGATGCGCAAGTCGGGGATCGATAGGGTGGTAGGT
66 CGGGCGGGCACTGCGCTGGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGT
** * *
21855371 AAGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAGTTCGTACA
131 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * **
21855436 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACAACTCATTTTTTATTTTTCATTATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATT
* * *
21855501 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATCTTTTCGGCAGGTGTTTTGGCCCCAAACTT
261 TTTGAAACTTTTTACGGTTTGGGATTTTTTAAAAT-TTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
21855566 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAAATCAGATACAAACTCGAAGTGT
325 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
21855630 AC---A----A-G---ATTT--------TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
390 ACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * * *
21855676 AAACTTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAAGGATAGG
455 AAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * * *
21855741 GGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCACGTGCGGACACCCCCCCCGACCC
520 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCC
* * *
21855806 CTCCGATCGCTGGAACCCTAATGCTGCCGGTCAGGTTCACCGACGATGCTCCGGCGATGGTGCCC
584 C-CCGATCGC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC
* * *
21855871 TGACGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTC
647 -GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * * *
21855936 CAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTGGACTAGGAATGAACTCCGTCTGCCTA
711 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
21856001 AGTCAACCCACGAAACGAGCGTAC-GTGCGCTCAGCAGGCTAGAGGGGCGGGATGCGCAAG-TCG
776 AGTCAACCCACGAAACGAGCGTGCAG-GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCT-G
* * * *
21856064 GGGATCGACAGGGTCCCCCTCTATGTGTTG---CC-G--A--A-ACCCTTCGTCT
839 GGGATCGAC-GGGTCCCCCTCTGTGTGCTGCATCCTGCTACCACAACCTTCATCT
*
21856110 GGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAA-CGAACGAAACGAGCGGACGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCG-ACGAAACGAGCGGGCGG
* * * *
21856174 GCGGTCGGGCACTGCGCCGGCCATAGAGAAGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGG
65 GCGGGCGGGCACTGCGCTGGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGG
21856239 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
130 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* **
21856304 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTTTATTTTTCATTAT
195 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGAT
* *
21856369 TTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATCTTTTCGGCAGGTGTTTTGGCCCCAAACT
260 TTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAAT-TTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
21856434 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGA-AAAAAAA-TCAGATAAAAAATCGAAGT
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGT
21856497 GTAC---A----A-G---ATTT--------TGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
388 GTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
21856543 ACAAACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATA
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
21856608 GGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCACACATCACGTGCGGACACCCCCCCGGCC
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * *
21856673 CCTCCGATCGCTGGAACCCCAATGCTGTCGGTCAGGTT-TACCGACGATGCTCAGGCGATGGTGC
583 CC-CCGATCGC-GGAACCCCAATGCCGCCGGTCAGGTTCT-CCGACGATGCTCCGGCGATGGTGC
* * * *
21856737 CCTGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCGG
645 CC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
21856802 TCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTCTGCC
709 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
21856867 TAAGTCAACCCACGAAACGAGCGTGCATGCGCTCAGCCGGCCAGAGAGGCGAGATGCGCAAGCCG
774 TAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTG
* *
21856932 GGGATTGACAGGGTCCCCCTCTATGTGCTG---CC-G-----A-AACCTTTC-TCT
839 GGGATCGAC-GGGTCCCCCTCTGTGTGCTGCATCCTGCTACCACAACC-TTCATCT
* *
21856977 GGTCTGATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAA-TGAACGAAACGAGCGGGCGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCG-ACGAAACGAGCGGGCGG
* * * * * *
21857041 GCGGTCAGGCACTGCGCCT-CCCATAGAGAAGGGATGCGCAACCCGGGGATCGATAGGGTGGTAG
65 GCGGGCGGGCACTGCG-CTGGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAG
*
21857105 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAGGCCATTTTTATGGCTTGTAAATTCATA
129 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
21857170 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCAGGA
194 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGA
* * * * *
21857235 TTTTTAAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGGTTTGACCCCAAAC
259 TTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
21857300 TTGGTAGATGTGATCCTTGTATTTTTGTTGTCATGCACAAAAAACTTCAGCTAAAAACTCGAAGT
323 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
21857365 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCA
388 GTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
21857430 GTAAACCTATAAAATCTCAAATGCTCTTT-AAGGTGGTGTGAGTTCTCAAGGTTTGATGTGGGAT
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
21857494 AGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCCCACATCATGTGCGCGCACACCCCCCGG
517 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGG
* * * * *
21857559 CCACCTCGATCACCGGAACCCCAATGCTGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGATGGTG
581 CC-CCCCGATC-GCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG
* * *
21857624 CCCCGACGAAGAAAAATGCGGC-CTCAGCACTTGCCCGAGCCCAGCATGTGCTACCGTAACCCTC
644 -CCCGACGAAGAAAAATGCGGCAC-CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * ** *
21857688 AGTCCGGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAACAAACTCCATATG
707 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* ** * *
21857753 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGGGCGCTCAGCTAGCCAGAGGAGCAGGATGCGC
772 CCTAAGTCAACCCACGAAACGAGCGT----GCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * * * ** *
21857818 AAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTACTGATCCTGTTGCCATAATCCTTGGTCC
833 AAGCTGGGGATC-GACGGGTCCCCCTCTGTGTGCTGC--ATCCTGCTACCACAA-CCTTCATCT
** * * * *
21857882 CATC-CATTCTTAGA-TAGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-TGAGCG
1 GGTCTGA-TCTTAGACT-GGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCG
** * * * * * *
21857941 AACGGGCAGGCACTACGCTGACCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTTG
64 GGCGGGCGGGCACTGCGCTGGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAG
21858006 GTGGGTTTAGGCACATCTTCATATTT-T-CGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
129 GTGGGTTTAGGCACATCTTCATATTTCTACG--TGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
21858069 TACAATGGTCCCTTAAGCCTTCACGTGATGTTTCTTGGCAAGACAACCCGTTTTCTATTTTTCAC
192 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCAC
** * * *
21858134 GATTTTCAAAACTTTTTTGCGGTTTGGGATTTTTTAAACCTTTTTCGGAAGGAGTTTTAGCCCCA
257 GATTTTTGAAAC-TTTTTACGGTTTGGGATTTTTTAAA-ATTTTTCGGAAGGAGTTTTGGCCCCA
* * * *
21858199 AACTTGGTAGATGTGATCCATGTAATTTTT-TTGGTATGCACAAAAAAATTCAGCCAAAAACTCG
320 AACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
21858263 AAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
384 AAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
21858328 GGCAGCAAACCTGCAAAATTTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGG
449 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
21858393 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGAGCACACCCCCCC
514 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
* * * *
21858458 GGCCCCCCTGATCGTCGGAACCCCAATGCCGTCGATCAAGTTCTCTGACGATGCTCCGGCGATGG
579 GGCCCCCC-GATCG-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGG
** * * *
21858523 TGCCTCGGTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCT
642 TGCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* *
21858588 CGGTTCGGTCCGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
706 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* *
21858653 GCCTAAGTCAACCCATGAAACGAGCATGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
771 GCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG
* * *
21858718 CTGGGGATCGATCGGGTCCTCCTCTGTGTACTGCCAATCCTACTACCACAACCTTCCATCT
836 CTGGGGATCGA-CGGGTCCCCCTCTGTGTGCTG-C-ATCCTGCTACCACAACCTT-CATCT
* * * * *
21858779 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTTAGCCAACCGATGAAACAAGCGGGTGGG
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCGGG
* * **
21858844 CGGGCGGGCACTAC-ATCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
66 CGGGCGGGCACTGCGCT-GGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGG
* * * * *
21858908 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACAATTTTTATGGCTTGTAAATTGATAC
130 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * ** * *
21858973 AATGGTCGCTTAAACCTTCGCGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGAT
195 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGAT
* * * *
21859038 TTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCGGCAGGAGTTTTGGACCCAAACT
260 TTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAA-TTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
21859103 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
324 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
21859168 TACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
389 TACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
21859233 CAAACCTGTAAAATCTCAAATGCTCTTT-AAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
454 CAAACCTGTAAAATCTCAAATGCTCTTTAAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
21859297 TGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCGCACACCCCTCGGC
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGC
* * * * *
21859362 CCCCTCTATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGC
582 CCCC-CGATCG-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
* * * *
21859427 CCCATCGAAGAAAAATGCGGCCCCAGCACATGCCCGAGCCCAGCATCTACTGCCGCAA----C--
645 CCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
21859486 -CC--T-CAATC-----C----AAT----T-TG-AT-CTGAGACTGGGAATGAACTCCGTATGCC
709 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
21859531 TAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGCCGGCCAAAGGGGTGGGATGCGCGAGCTG
774 TAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTG
* * * * * * *
21859596 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCTTGCTGCCGCAACCCTCAGTCC
839 GGGATC-GACGGGTCCCCCTCTGTGTGCTGC--ATCCTGCTACCACAACCTTCA-TCT
* * *
21859654 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAACCGACGAAACGA--------G
1 GGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCGGG
21859711 CGGGC-GG----GCG--GG-C-G-G-G-C-----G-G---G-C--GGATCGATAGGGTGGTAGGT
66 CGGGCGGGCACTGCGCTGGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGT
* * ** *
21859752 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGAGATTTTTATGGCTTGTAAATTCATATA
131 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
** *
21859817 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTGACGATT
196 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATT
** *** * * *
21859882 TTTGAAACTTTTTGTGGTTTAAAATTTTTTTAACTTTTTCGGAAGGAGTTTTGGCCCAAAACTTG
261 TTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * * *
21859947 GTAGACATGATCCTTGTATTTTTATTGGCACGTAAAAAAAAATTCAGCTAAAAACTCAAAGTGTA
326 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * * * * *
21860012 CAAAATTTTGTGACCATTTGAAAAAAGTGACACCATTTCAAACACTTTAATGGCTACTGGCAGTA
391 CAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
21860077 AACCTGTAAAATATCAATTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
456 AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* **
21860142 GGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-G---AT
521 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
* * * *
21860202 C-AT--CGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCCGAC
586 CGATCGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTG-CCCGAC
* ** * * *
21860264 GAAGAAAAATTCGGCACCAGCACATGCTGGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGAT
650 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* *
21860329 TCGATCTTAGACTGGGAGTGAACTCCGTATGC
715 CCGATCTTAGACTGGGAATGAACTCCGTATGC
21860361 CTAAGCCAAC
Statistics
Matches: 3770, Mismatches: 362, Indels: 250
0.86 0.08 0.06
Matches are distributed among these distances:
831 95 0.03
832 4 0.00
834 2 0.00
835 2 0.00
838 1 0.00
839 1 0.00
840 6 0.00
841 4 0.00
842 250 0.07
843 167 0.04
845 1 0.00
846 2 0.00
849 1 0.00
850 3 0.00
854 1 0.00
855 2 0.00
856 3 0.00
857 2 0.00
858 1 0.00
859 1 0.00
860 2 0.00
862 1 0.00
866 3 0.00
867 353 0.09
868 305 0.08
869 522 0.14
870 8 0.00
871 1 0.00
874 3 0.00
875 177 0.05
876 4 0.00
877 1 0.00
878 1 0.00
879 4 0.00
882 3 0.00
886 4 0.00
887 139 0.04
888 193 0.05
889 7 0.00
891 4 0.00
892 56 0.01
893 2 0.00
894 1 0.00
896 5 0.00
897 114 0.03
898 7 0.00
899 12 0.00
900 284 0.08
901 668 0.18
902 274 0.07
903 12 0.00
904 9 0.00
905 41 0.01
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
GGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCGGG
CGGGCGGGCACTGCGCTGGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATT
TTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
CGATCGCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCGACG
AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCG
ACGGGTCCCCCTCTGTGTGCTGCATCCTGCTACCACAACCTTCATCT
Found at i:21861978 original size:26 final size:26
Alignment explanation
Indices: 21861949--21862004 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
21861939 CCGGTCCGAT
*
21861949 CTTAGTCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21861975 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21862001 CTTA
1 CTTA
21862005 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21862732 original size:902 final size:896
Alignment explanation
Indices: 21860328--21864670 Score: 5340
Period size: 907 Copynumber: 4.8 Consensus size: 896
21860318 CTCGATCTGA
* * *
21860328 TTCGATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAACCGA-TAAACGAGCGCGTGGACG
1 TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGCG-GG-CG
* * * ** *
21860392 GGC-GACAGGCACTACGCCGGCCAGAGAGACGGGATGCTCATTCCATGGATCGATAAGGTGGTAG
64 AGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
* *
21860456 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAAAGCCATTTTTATGGCTTGTAAATTCATA
129 GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
21860521 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAAGA
194 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* ** * *
21860586 TTTTTGAAACTTTTTTTGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAAC
259 TTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAAC
*
21860651 TTGGTAGACGTGATCCTTGTACTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
323 TTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
21860716 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCA
387 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
21860781 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
21860846 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTGCCCCG
517 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CC--CCCCG
* * * * * * ** * *
21860911 ACCCCCTCGATCGCCAGAAACCCAATGCCGCCGGTCAGTTTCTTTGGCGATGCTCAGGCGATGGT
578 GCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGT
** * * * *
21860976 GCCCCGACGAAGAAAACTACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTT
642 GCCCCGGTGAAAAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTT
* * ** * * * *
21861041 GGTCTGATTTGATCTTAGACTGGGAATGAACTCTGTATACTTAGACTGGGAATGAACTCCGTAAG
706 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATG
* * * * * **
21861106 CCTAAGTCAACCCATGAAATGAGGTACGGGCACTCAACTGGCCAGAGGGGCGGGATAAGCAAGCC
771 CCTAAGTCAACCCATGAAATGAGGTGCGGACGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* **
21861171 TGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCCTACTACCGCAACCCTCAGTCCAG
836 GGGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTACTACCGCAACCCTCAGTCCAG
* * *
21861232 -TCTGATCTTAGACTAGGAATGAACTCC-TGATGCCTAAGGCAACCGACGAAAC--GAGCGGGCA
1 TTC-GATCTTAGACTGGGAATGAACTCCGT-ATGCCTAAGCCAACCGACGAAACGAGAGCGGGCG
* * *
21861293 AGC--A--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCAATAGGGTGGTAG
64 AGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
*
21861354 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
129 GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* ** * *
21861419 CAATGCTCCCTTAAGCCTTCACGCAAAGTTTCATGGCAAGACGAGTCGTTTTTTATTTTTCACGA
194 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * * *
21861484 TTTTCAAAACTTTTTACAGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCCAAA
259 TTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTG-GCCCCAAA
* * * *
21861549 CTTGGTAGATGTAATCCTTGTAATTGTGTTGGCATGCACAAAAAAATTCAGCTAAACACTCGAAG
322 CTTGGTAGACGTGATCCTTGT-ATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * * *
21861614 TGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCGAATTCAGACACTTTAATGACTACTGGC
386 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
21861679 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAAGTTTGATGAGGGAT
451 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * ** ** * *
21861744 AGGGGGCCAATATAATGGCTAAGTATTAGTGCCCATCGCACATCCTGTGCGTACACCCCCCGGCC
516 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * * * *
21861809 GCCCCGATCATCGGAACCCCAATGTCGTCAGTCATGTTCTCCGATGATGCTCCTGCGATGGTGCC
581 -CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCC
* *
21861874 CCGATGAAAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATATGCTGCCGCAACCCTTGGT
645 CCGGTGAAAAAAAATGCGGCACCAGCACATGC-CGAGCCCAGCATGTGCTGCCGCAACCCTTGGT
* * *
21861939 CCGGTCCGATCTTAGTCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCTT
709 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCT
* * *
21862004 AAGTCAACCCATAAAATGAGCGTGCGGATGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGG
774 AAGTCAACCCATGAAATGAG-GTGCGGACGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
** * * * *
21862069 GGATCGAAAGGGTCCCCCACTACGTGCTACCGATCCTGCTACTGCAACCCTCAGTCCGG
838 GGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTACTACCGCAACCCTCAGTCCAG
*
21862128 TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAAGCAGGCG
1 TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG--AGCGGGCG
* * * * * * *
21862193 GGCGGACGGGCACTACACCGTCCAGAGAGACGAGATGCGCAACCCATGGATTGATAGGGTGGCAG
64 AGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
** * *
21862258 GAT-GGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGCCATTTTCATGGCTTGTAAATTCAT
129 G-TGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * *
21862322 ACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATTGCGAGACAACTCGTTTTCTATTTTTCACG
193 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
21862387 ATTTTTAAAATTTTTTACGGTTCAGGATTTTTTAAAACTTTTTTGGAAGGAGTTTTGGCCCCAAA
258 ATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAA
* *
21862452 CTTGGTAGACGTGATCCTTGTATTTTGTTGGGATGCATAAAAAAATTCAGCTAAAAACTC-AATG
322 CTTGGTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-G
* *
21862516 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGAC
386 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
21862581 AGTAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
451 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
21862646 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGAT
516 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-C
** * ** * *
21862711 CCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTTCGGTGATGGTGCC
580 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCC
* * * ** *
21862776 CTGGTGAAAAAAAATGCGGCACCAGCACATGCCTGTGCCTAGCATGTGCTATCGCAACCCTCGGT
645 CCGGTGAAAAAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGCAACCCTTGGT
* * ** *
21862841 CTGGTTCGATCTTAGACTCTGAATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCA
709 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCT
* ** * ** * * * * *
21862906 AAGTCAACCCATGAAACGAACATGCGGGCGCTTTGCTGGCCATAGGGGCAGGATGCGAAAGCCGA
774 AAGTCAACCCATGAAATG-AGGTGCGGACGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* ** * * *
21862971 AGATCGGCCGGGTCCCCCTCTGCGTGCTACC-A--C-A--A---C--CCTTGA-TCCAG
838 GGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTACTACCGCAACCCTCAGTCCAG
* * * * *
21863018 -TCTAATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACTGACGAAAC-A-TGCGGGTGA
1 TTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGCGGGCGA
* * * * * *
21863080 TCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGG
65 GCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGG
*
21863145 TGGGTTTAGGCAGATCTTCATATTTCTGCT-TGCCAATGCCATTTTTATGGCTTGTAAATTCATA
130 TGGGTTTAGGCACATCTTCATATTTCTG-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
21863209 CAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
194 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * *
21863274 TTTTTAAAACATTTTACGGTTCGGGATCTTTTAAAATTTTTTTGGAAGAAGTTTTGGTCCCAAAC
259 TTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAAC
* * *
21863339 TTGGTAGACGTGATCCTTGTATTTTTTCTGGCATGCCCAAAAAAATTAAGCTAAAAACTCGAAGT
323 TTGGTAGACGTGATCCTTGTATTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
21863404 GTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTAAGACACTTTAATAGCTACTGCCA
387 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
21863469 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGATGTTTGATGTGGGATA
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
21863534 GGGGGCCAATATAAAGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
517 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
** *
21863599 CCCCTGATCGTCGGAACCCCAATGCCG-CTAATCAGGTTCTCCGGTGATGCTCTGGCGATGGTGC
581 CCCC-GATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGC
** **
21863663 CCCGGTGAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTTGG
644 CCCGGTGAAAAAAAATGCGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGCCGCAACCCTTGG
* * * * ** * *
21863728 TTCGGTCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCGCAA--AACGAGCGT
708 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG-CTTAG---ACTGGGAATGAAC-ACCGT
* * * * ** * * ** * * **
21863791 GCA-GGC--ACTC-AGCC-GGCTA-GAGGGGCAGGATG-T--GCAAGCC-G-GGGATCAGTCTGC
768 --ATGCCTAAGTCAACCCATGAAATGAGGTGC-GGACGCTCAGCCGGCCAGAGGG-GCGGGATGC
* *** ** * * *
21863845 -CAATCCTACTG-TCGTAACCCTCGGTCTGATCCCCCTCTGTGTGCTATCGATCTTACTGCCGCA
829 GCAAGCC-GGGGATCG--A---TCGG---G-TCCCCCTCTACGTGCTACCGATCCTACTACCGCA
*
21863908 ACCCTCGGTCCAG
884 ACCCTCAGTCCAG
* * * * * * *
21863921 TCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCATCTGATGAAACGAGCGAGTGGGCG
1 TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--GAGCGGGCG
* * * * **
21863986 CGTGGGCGGGTACTACGCCGGCCAGAGAGACGGGATAAGCAAGCCATGGATCGATAGGGTGGTAG
64 AGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
21864051 GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
129 GTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
21864116 CAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGATTTCTATTTTTCACGA
194 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* *** * * *
21864181 TTTTCAAAACTTTTTGTTGTTCGGGATTTTTTAAAATTCTTTTAGAGGGAGTTTTTGCCCCAAAC
259 TTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATT-TTTTGGAAGGAGTTTTGGCCCCAAAC
* *
21864246 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGT
323 TTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
21864311 GTACAAGATTTTGTGATCATTCGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCA
387 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
21864376 GTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
21864441 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCG
517 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC-
* * * *
21864506 CCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCACCGGTGATGCTCCAGTGATGGTGCCC
581 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCC
* *
21864571 CGGT-AAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGT
646 CGGTGAAA-AAAAATGCGGCACCAGCACATGCC-GAGCCCAGCATGTGCTGCCGCAACCCTTGGT
* *
21864635 CCTGT-CGATCTTAGACTGGGAATGAACTCCATATGC
709 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
21864671 CAAAGCCAAC
Statistics
Matches: 2966, Mismatches: 396, Indels: 154
0.84 0.11 0.04
Matches are distributed among these distances:
882 10 0.00
883 7 0.00
884 5 0.00
885 1 0.00
886 262 0.09
887 215 0.07
888 145 0.05
889 12 0.00
890 57 0.02
891 25 0.01
892 8 0.00
893 2 0.00
894 1 0.00
895 186 0.06
896 134 0.05
897 11 0.00
898 214 0.07
899 234 0.08
900 11 0.00
901 7 0.00
902 457 0.15
903 83 0.03
904 248 0.08
905 43 0.01
906 119 0.04
907 464 0.16
908 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGAGCGGGCGAG
CGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
TTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTG
AAAAAAAATGCGGCACCAGCACATGCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTAAGTCAA
CCCATGAAATGAGGTGCGGACGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
CGGGTCCCCCTCTACGTGCTACCGATCCTACTACCGCAACCCTCAGTCCAG
Found at i:21862890 original size:26 final size:26
Alignment explanation
Indices: 21862851--21862903 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
21862841 CTGGTTCGAT
* *
21862851 CTTAGACTCTGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACACCGTATG
*
21862877 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTCGGAATGAACACCGTATG
21862903 C
1 C
21862904 CAAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACACCGTATG
Found at i:21865652 original size:717 final size:711
Alignment explanation
Indices: 21863900--21869658 Score: 8233
Period size: 717 Copynumber: 8.1 Consensus size: 711
21863890 ATCGATCTTA
* * * * *
21863900 CTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCATCT
1 CTGCCGCAACCCTCGGTCCGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * **
21863965 GATGAAACGAGCGAGTGGGC-GCGTGGGCGGGTACTACGCCGGCCAGAGAGACGGGATAAGCAAG
65 GACGAAACGAGC-A---GGCAG-GCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
***
21864029 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
125 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
21864094 TTTTATGGCTTGTAAATTCATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
190 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *** *
21864159 ACTCGATTTCTATTTTTCACGATTTTCAAAACTTTTTGTTGTTCGGGATTTTTTAAAATTCTTTT
255 ACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATT-TTTT
* * * *
21864224 -AGAGGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
319 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
21864288 ACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGATCATTCGAAAAAAGTGTCCCCATTTC
384 A-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
21864353 AGACATTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
448 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
21864418 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
513 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
21864483 CATGTGCGCACA--CCCCCCGGCCGCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCAC
578 CATGTGCGCACACCCCCCCCGG-C-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * ** *
21864546 CGGTGATGCTCCAGTGATGGTGCCCCGGTAAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCA
641 C-GCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
21864611 GCATGTG
705 GCATGTG
* * * *
21864618 CTGCCGTAACCCTCGGTCCTGTCGATCTTAGACTGGGAATGAACTCCATATGCCAAAGCCAACCG
1 CTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
21864683 ACGAAATGAGCGGGTGGACGGGCGGGCGGGCACTACGTCGGCCACAGTA-ACGGGATGCGCAAGC
66 ACGAAACGAGC---AGG-CAGGCGGGCGGGCACTACGTCGGCCAGAG-AGACGGGATGCGCAAGC
* * * *
21864747 CGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGACAATGCCATT
126 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* *
21864812 TTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGACGA
191 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
21864877 CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-GAGATTTTTTAAAATTTTTTC
256 CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTC
* *
21864941 GGAGGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAA
320 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
*
21865006 CATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
385 -ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
21865071 GACATTTTAATGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
449 GACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
21865136 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATA
514 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
21865201 ATGTGCGCACACCCCCCCCTGGCGTCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
579 ATGTGCGCACACCCCCCCC-GGC--CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * *
21865266 CAGCGATGCTCCGGCGATGGTGACCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTA
641 C-GCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
*
21865331 GTATGTG
705 GCATGTG
* *
21865338 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAATCGAACC
1 CTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* *
21865403 GACGAAACG-GCAGGCTGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGCATGCGCAAGCCATG
65 GACGAAACGAGCAGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATG
*
21865467 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTC
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
*
21865532 TGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
21865597 TTTTCTATTTTTCATAATTTTTAAAAAATTTTTACGGTTCAGGATTTTGTAAAATTTTTTCGAAA
260 TTTTCTATTTTTCATGATTTTT-AAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAA
* *
21865662 GGAGTTTTGACCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
324 GGAGTTTTG-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAT
** * * * *
21865727 TCAGGGAAAAACTTGAAGTGAACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAAAC
387 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
21865792 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
452 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
21865857 CAAGGTTTGATGAGGGATACGGGGCCAATATTAGGGCCAAATACCAGCACCCATCGCACATCATG
517 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
21865922 TGCGCACACCCCCAGCC--CCCCCGATCGTCGGAACCCCAATGCAGCCGGTCAGGTTCT---C-A
582 TGCGCACACCCCC-CCCGGCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGA
*
21865981 ------GGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGT
646 TGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
21866040 G
711 G
* * * * *
21866041 CTGCTGCAACCCTTGGTCTGATCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCA
1 CTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
21866106 ACGAAACGAGCAGGCAGGAGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGTCGTGG
66 ACGAAACGAGCAGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGG
* * * * *
21866171 ATCGATAGGGTAGTTGGTGGGTTTAGGCACGTCATCATATTTCTGCATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* * *
21866236 GGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACAACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** *
21866301 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAAATTTTTTAAAATTTTTTTGGAAGG
261 TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
* * *
21866366 AGTTTTGGCCCCAAACTTGGTAGACATGATCGTTCTATTTTTGTTGGCATGCACAACAAAATTAA
326 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA-AAAATTCA
21866431 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-CCCCATTTCAGACACT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
21866495 TTAACGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
455 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
*
21866560 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGC
520 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
*
21866625 GCACACCCCCCCCGGCGCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCGAT
585 GCACACCCCCCCC-G-GCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGAT
* * * * *
21866690 GCTCCGGCGATGGTGACCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGGCTAGTATGTG
647 GCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
21866755 CTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAATCGAACC
1 CTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
21866820 GACGAAACG-GCAGGCTGGCGGGCGGGCACTACGTCGACCAGAGAGACGGCATGCGCAAACCATG
65 GACGAAACGAGCAGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATG
*
21866884 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTC
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
*
21866949 TGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
21867014 TTTTCTATTTTTCATAATTTTTAAAAAATTTTTACGGTTCAGGATTTTGTAAAATTTTTTCGGAA
260 TTTTCTATTTTTCATGATTTTT-AAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAA
* *
21867079 GGAGTTTTGACCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
324 GGAGTTTTG-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAT
** * *
21867144 TCAGGGAAAAACTTGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
387 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
21867209 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
452 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
21867274 CAAGGTTTGACGAGGGATACGGGGCCAATATTAGGGCCAAATACCAGCACCCATCGCACATCATG
517 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* *
21867339 TGCGCACACCCCCAGCC--CCCCCGATCGTCGGAACCCCAATGCAGCCGGTCAGGTTCT---C-A
582 TGCGCACACCCCC-CCCGGCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGA
* *
21867398 ------GGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGT
646 TGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
21867457 G
711 G
** * * * *
21867458 CTGTTGCAACCCTCGGTCTGATCGATCTTACACTGGGAATGAACTCCGTATGCCTAAGCCAACCA
1 CTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
21867523 ACGAAACGAGCAGGCAGGAGGGCGGGCACTACGTCGGCCAGAGAGACGTGATGCGCAAGTCTTGG
66 ACGAAACGAGCAGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGG
* * * *
21867588 ATCGATAGGGTAGTTGGTGGGTTTAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
*
21867653 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** *
21867718 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAAATTTTTTAAAATTTTTTTGGAAGG
261 TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
* * * *
21867783 AGTTTTGGCCCCAAACTTTGTAGACATGATCGTTCTATTTTTGTTGGCATGCACAACAAAATTAA
326 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA-AAAATTCA
21867848 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-CCCCATTTCAGACACT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
21867912 TTAATGGCTACCGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA-TTCTCGA
455 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
*
21867976 GGTTGTTGATGA-GGATTAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCCATCGCACATTAA
520 GG-T-TTGATGAGGGA-TAGGGGGCCAATATAAGGGCCAAGTACCAGCAC-CCATCGCACA-TCA
* *
21868040 TGTGCGCACACCCCCCCCCGGCGCCCCCGATCGTCGGAACCCCATTGCCGTCGGTCAGGTTCTCC
580 TGTGCGCACA-CCCCCCCC-G-GCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* *
21868105 AG-GCATGCTCCGGCGATGGTGACCCGGCGAAGAAAAATGTTGGCACCAGCACATGCCCGAGGCC
642 -GCG-ATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATG-CGGCACCAGCACATGCCCGA-GCC
* *
21868169 TAGTATGTTG
703 CAGCATG-TG
* *
21868179 CTGCCGCCAACCCTCGGTCCGGTCTGATTCTTAGACTGGGAATGAACTCCGTATGCCTAATCGAA
1 CTGCCG-CAACCCTCGGTCCGGTC-GA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
21868244 TCGACGAAACG-GCAGGCTGGCGGGCGGGCACTACGGTCGGCCAGAGAGACGGCCATGC-CAAGC
63 CCGACGAAACGAGCAGGCAGGCGGGCGGGCACTAC-GTCGGCCAGAGAGACGG-GATGCGCAAGC
21868307 CATGGATCGATAGGGTTGGTAGGTGGGTTTTAGGCACATCTTCATATTTCTACCATGCCAATGCC
126 CATGGATCGATAGGG-TGGTAGGTGGG-TTTAGGCACATCTTCATATTTCTA-CATGCCAATGCC
* *
21868372 ATTTTTTCTGGCTTTCTAAATTCATAC-ATGGTCCCTTAAGGCCTTTCACGTGAAGTTTCATGGC
188 A-TTTTTATGGC-TTGTAAATTCATACAATGGTCCCTTAA-GCC-TTCACGTGAAGTTTCATGGC
* * *
21868436 AAGACGACTCGTTTTCTATTTTTCATAATTTTTAAAAAATTTTTACGGTTCAGGATTTTGTAAAA
249 AAGACGACTCGTTTTCTATTTTTCATGATTTTT-AAAACTTTTTACGGTTCAGGATTTTTTAAAA
* *
21868501 TTTTTTCGGAAGGAGTTTTGACCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
313 TTTTTTCGGAAGGAGTTTTG-GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATG
** * *
21868566 CACAAAAAAATTCAGGGAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTCTCC
377 CAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
21868631 CCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
441 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGG
* * *
21868696 GTGTGAGTTCTCAAGGTTTGATGAGGGATACGGGGCCAATATTAGGGCCAAATACCAGCACCCAT
506 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
21868761 CGCACATCATATGCGCACACCCCCAGCC--CCCCCGATCGTCGGAACCCCAATGCAGCCGGTCAG
571 CGCACATCATGTGCGCACACCCCC-CCCGGCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
* *
21868824 GTTCT---C-A------GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGA
635 GTTCTCCGCGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGA
21868879 GCCCAGCATGTG
700 GCCCAGCATGTG
* * * * *
21868891 CTGCTGCAACCCTCGATCTGATCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCA
1 CTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * *
21868956 ACGAAACGAGTAGGCAGGAGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGG
66 ACGAAACGAGCAGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGG
* * * *
21869021 ATCGATAGGGTAGTCGGTGGGTTTAGGCACATCATCATATTTCTGCATGCCAATGCCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* *
21869086 GGCTTGTAGATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* ** *
21869151 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAAATTTTTTAAAATTTTTTTGGAAGG
261 TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
* * *
21869216 AGTTTTGGCCCCAAACTTGGTAGACATGATCGTTCTATTTTTGTTGGCATGCACAACAAAATTAA
326 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA-AAAATTCA
21869281 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG-CCCCATTTCAGACACT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
21869345 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTATAAGGGGGTGTGAGTTCTCGA
455 TTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
** * *
21869410 GGTTTGATGAGGGATAGGCAGCCAATATAAGGGCCAAGTACCAGTACCCATCACACATCATGTGC
520 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
** *
21869475 GCACACCTACACCGGCTCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
585 GCACACCCCCCCCGG--CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGAT
* * * *
21869540 GCTCTGGCGATGGTGCCCC-ACTGAAGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGT
647 GCTCCGGCGATGGTGCCCCGGC-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
21869604 G
711 G
** * * *
21869605 CTATCGTAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGC
1 CTGCCGCAACCCTCGGTCCGGTC-GATCTTAGACTGGGAATGAACTCCGTATGC
21869659 TTACACTAGG
Statistics
Matches: 4535, Mismatches: 397, Indels: 221
0.88 0.08 0.04
Matches are distributed among these distances:
699 12 0.00
700 374 0.08
701 316 0.07
702 237 0.05
703 668 0.15
704 20 0.00
705 21 0.00
706 13 0.00
707 61 0.01
708 15 0.00
709 81 0.02
710 24 0.01
711 14 0.00
712 8 0.00
713 10 0.00
714 425 0.09
715 148 0.03
716 289 0.06
717 713 0.16
718 292 0.06
719 33 0.01
720 133 0.03
721 52 0.01
722 15 0.00
723 23 0.01
724 77 0.02
725 13 0.00
726 59 0.01
727 13 0.00
728 21 0.00
729 21 0.00
730 64 0.01
731 55 0.01
732 130 0.03
733 77 0.02
734 8 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (711 bp):
CTGCCGCAACCCTCGGTCCGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCAGGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCCGGCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTC
CGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
Found at i:21869661 original size:26 final size:26
Alignment explanation
Indices: 21869632--21869684 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21869622 CTGGTCTGAT
* *
21869632 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCTGTATG
21869658 CTTACACTAGGAATGAACTCTGTATG
1 CTTACACTAGGAATGAACTCTGTATG
21869684 C
1 C
21869685 CCAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCTGTATG
Found at i:21870908 original size:489 final size:489
Alignment explanation
Indices: 21869988--21870929 Score: 1462
Period size: 489 Copynumber: 1.9 Consensus size: 489
21869978 CCAATGCCAT
* *
21869988 TTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATAGCAAGATG
1 TTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATAGCAAGACG
* * * * *
21870053 ACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTTAAATTCTTTT
66 ACACGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTCTTTT
* ** * *
21870118 GGAAGGCTTTTTGGCCCCAACCTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
131 AGAAGGAGTTATGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * *
21870183 AATTCAGCTAAAAACTCGAAGTGTACAGGATTCTGTGCCCATTTGAAAAAAGTGTCCCCATTTTA
196 AATTCAGCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTAA
*
21870248 GATACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
261 GAGACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* ** * *
21870313 TCTCAAGGTTTGATAAGGGATAGGGGCCCAATATAAGGGCTAAGTACCAGCACCCATTGCACGTC
326 TCTCAAGGTTTGATAAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACAAATCGCACATC
* * * **
21870378 ATGTGCGCACACCCCGTCGGCTCCCTCGATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCTCTA
391 ATGTGCGCACACCCCGCCGCCCCCCTCGATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCTA
21870443 GTGATGGTGCCCCGACGAAGAAAAATACAGCAAA
456 GTGATGGTGCCCCGACGAAGAAAAATACAGCAAA
*
21870477 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCA-AGGCAAGAC
1 TTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATA-GCAAGAC
21870541 GACACGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATT-TTT
65 GACACGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTCTTT
* * * *
21870605 TCAGAATGAGTTATGGCCCCAAATTTGGTAGACT-TGATCCTTGTATTTTTTTTGGTATGCATAA
130 T-AGAAGGAGTTATGGCCCCAAACTTGGTAGA-TGTGATCCTTGTATTTTTTTTGGCATGCACAA
*
21870669 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
193 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
21870734 TAAGAGACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
258 TAAGAGACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
21870799 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCAAATCGCA
323 AGTTCTCAAGGTTTGATAAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCA-CAAATCGCA
* *
21870864 CATCATGTGCGCACACCCC-CCGACCCCCCT-GGTCGCCGGAACCCCAATGCCACCGGTCAGGTT
387 CATCATGTGCGCACACCCCGCCG-CCCCCCTCGATCGCCAGAACCCCAATGCCACCGGTCAGGTT
21870927 CTC
451 CTC
21870930 CGGCGATGCT
Statistics
Matches: 410, Mismatches: 38, Indels: 10
0.90 0.08 0.02
Matches are distributed among these distances:
488 5 0.01
489 375 0.91
490 30 0.07
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.31
Consensus pattern (489 bp):
TTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCATAGCAAGACG
ACACGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTCTTTT
AGAAGGAGTTATGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTCTGTGACCATTTGAAAAAAGTGTCCCCATTTAA
GAGACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCAAGGTTTGATAAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACAAATCGCACATC
ATGTGCGCACACCCCGCCGCCCCCCTCGATCGCCAGAACCCCAATGCCACCGGTCAGGTTCTCTA
GTGATGGTGCCCCGACGAAGAAAAATACAGCAAA
Found at i:21872489 original size:892 final size:875
Alignment explanation
Indices: 21870477--21873288 Score: 3255
Period size: 871 Copynumber: 3.2 Consensus size: 875
21870467 ATACAGCAAA
* *
21870477 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAGGTGAAGTTTCAAGGCAAGACG
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * ** * *
21870542 ACACGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAATTTTTTC
66 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
21870607 AGAATGAGTTATGGCCCCAAATTTGGTAGACT-TGATCCTTGTATTTTTTTTGGTATGCATAAAA
131 GGAATGAGTTTTGGCCCCAAACTTGGTAGA-TGTGATCCTTGTATTTTTTTTGGCATGCATAAAA
*
21870671 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
195 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
* * *
21870736 AGAGACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
260 CGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* **
21870801 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCATCAAATCGCACA
325 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCCATCGCACA
* * * *
21870866 TCATGTGCGCACACCCCCCGACCCCCCTGGTCGCCGGAACCCCAATGCCACCGGTCAGGTTCTCC
389 TCATGTGTGCACACCCCCCGGCCCCCC-GATCTCCGGAACCCCAATGCCACCGGTCAGGTTCT--
* * * * * *
21870931 GGCGATGCTCCGATGATGGTGCCTCGGCGAAGAGAAATGCGGCAGCAGCACATGCCTGAGCCCAA
451 --C-A---TCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAG
* * *
21870996 CATGTGCTGCTGCAA-CC-C--TT--GGTC-C-G---G-T---C-CGAT-CTTAGACTGGGAATG
510 CATGTGCTGCCGCAACCCTCGGTTCCGATCTCAGACTGATGAACTCTATGCTTAGACTGGGAATG
* * * *
21871044 AACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGCGGGGCGA
575 AACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG-CGACCAGAGGGGCG-
* * * *
21871109 GATGCACAAGCCGGGGATCGACCGGGTCACCCTCTACGTGCTGCCGATCCTGCTGCTGCAACCTT
638 GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCTGCAACCTT
* *
21871174 TAGTTCGGTTCAATCTTAGACTGGGAATGAA-CTCTGTA-TGCCAAAGCCAACCGACGAAACGAG
703 GA-TCCGG-TCAATCTTAGACTGGGAATGAATCTC-GTATTGCCAAA-CCAACCGACGAAACGAG
* * * * * *
21871237 CGGACGGGCAGGC--ACTATACCGGCTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAAGGTG
764 CGGGCGGGCGGGCGGACTA-CCCCGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
21871300 GTAT-GTGGGTTTAGGCATATCTTCATATTTCTG--TGTGCCAACA-CCAT
828 GT-TGGTGGGTTTAGGCACATCTTCATATTTCTGCAT-TGCCAA-ATGCAT
* *
21871347 TTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACG
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
21871412 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTTTAAATTTTTT
66 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTT
* * * * * * * *
21871477 TGGAAGGATTTTTGGCCCCAAACTTGGTGGACGGGATCCTTGTATTTTTTTTGGCATACACAAAA
130 CGGAATGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAA
* *
21871542 AAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTT
195 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
* * *
21871607 CGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCGATTGCTCTTTAAGGGGGTGTGGG
260 CGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
21871672 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT
325 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
21871737 CTTGTGTGCACACCCCCCCGGCACCCCCGATCTCCGGAACCCTAATGCCACCGGCCAGG-T-T-A
390 CATGTGTGCACA-CCCCCCGGC-CCCCCGATCTCCGGAACCCCAATGCCACCGGTCAGGTTCTCA
* * *
21871799 TCCGGTGATGGTGCCCCGACGAAGAAAAATCCAGCACCAGCAAATG-CTCGAGCCCAGCATGTGC
453 TCCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGC
21871863 TGCCGCAACCCTCGGTCCAATCCGATCTCAGACTGATAATGAACTCAATATGCTTAGACTGGGAA
517 TGCCGCAACCCTCGGT----TCCGATCTCAGACTG---ATGAACTC--TATGCTTAGACTGGGAA
* * * * * *
21871928 TGAACTACGTATGCCTAAGTCAACCCACGAAACGAGCATGCGCGCGATCAGTCGACCAAAGGGGC
573 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG-CGACCAGAGGGGC
* * * * * *
21871993 AGGATGTGCAAGCCGGGGATCTG-TCGGGTCCCCCTTTGTGCGCTGCCAATCCTGCTG-TCGTAA
637 -GGATGCGCAAGCCGGGGATC-GACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCT-GCAA
* * ** * *
21872056 CCTCGATCCGGTCTATCTTAGACTACGAATGAATTTTCGTATTGCCGAAACCAACTGACGAAACG
699 CCTTGATCCGGTCAATCTTAGACTGGGAATGAA-TCTCGTATTGCC-AAACCAACCGACGAAACG
* * *
21872121 AGCGCGTGCGGATGCGGGCGAGAACTACCCCGCCA-AGAAGAC-GGACGTGTAAGCCGTGGATCG
762 AGCG-G-GCGG--GCGGGCG-G-ACTACCCCGCCAGAG-AGACAGGATGCGCAAGCCGTGGATCG
* *
21872184 ATAGGGTAGTTGGTGGGTTTAGGCACATCTTCATATTTATGCATTGCCAAATGCAT
820 ATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATTGCCAAATGCAT
21872240 TTTTAATGGCTTGTAAATTCATACAAT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
1 TTTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
21872304 GACTCGTTTTCTATTTTTCATGATTTCCAAAATTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
65 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * *
21872369 CGGAATAAGTTTTGGTCCCAAACTAGGTAGATGTGATCCTTGTATTTTTGTTGGCACGCATAAAA
130 CGGAATGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAA
*
21872434 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCA-TTT
195 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
* *
21872498 CAGACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGA
260 C-GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
21872563 GTTCTCGAGGTTTGATGAGGGATA-GGGGCCAACATAAGGGCCAAGTACCATCACCCATCACACA
324 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* **
21872627 TCATGTGTGCACA-CCCCCGGCCCCCCCAATCGT-CGGAACCCCAATGCCGTCGGTCAGGTTCTC
389 TCATGTGTGCACACCCCCCGG-CCCCCCGATC-TCCGGAACCCCAATGCCACCGGTCAGGTTCT-
* * * *
21872690 CGGCGATGCTCTGGCGACGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCG
451 ---C-AT-C-C-GGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCA
* * * *
21872755 GAATGTGCTGTCACAACCGTCGGTTTGGTCCGATCGT-AGACTGGGATTGAACTCCGTATGCTTA
509 GCATGTGCTGCCGCAACCCTCGG--T--TCCGATC-TCAGACT--GA-TGAACT-C-TATGCTTA
* *
21872819 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCACT
564 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCGACC
* * * *
21872884 AGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCCATCCCGTTG
629 AGAGGGGC-GGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTG
* * * *
21872949 CTGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAA-CTC-TATATGCCTAAGCCAACCG
693 CTGCAA-CCTTGATCCGGT-CAATCTTAGACTGGGAATGAATCTCGTAT-TGCC-AAACCAACCG
* * * * * *
21873012 ATGAAACGAACGGGTGGGCGGGCGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGCGGTGG
754 ACGAAACGAGCGGGCGGGCGGGC-GG-ACTAC-CCCGCCAGAGAGACAGGATGCGCAAGCCGTGG
* *
21873077 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCA-TGCC-AATGCAAT
816 ATCGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATTGCCAAATGC-AT
* *
21873136 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACATGAAGTTTCATGGCAAGACG
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * *
21873201 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTCTGCGGTTCGGGATTTTTTAAAATTTTTTT
66 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
* * *
21873266 GAAAGGTGTTTTGGCCCCAAACT
131 GGAATGAGTTTTGGCCCCAAACT
21873289 CAAAGTGTAC
Statistics
Matches: 1647, Mismatches: 210, Indels: 144
0.82 0.10 0.07
Matches are distributed among these distances:
859 2 0.00
860 59 0.04
861 2 0.00
862 1 0.00
863 1 0.00
864 1 0.00
868 1 0.00
869 1 0.00
870 124 0.08
871 275 0.17
872 6 0.00
875 1 0.00
879 1 0.00
882 1 0.00
883 1 0.00
884 19 0.01
885 10 0.01
886 142 0.09
887 6 0.00
888 3 0.00
889 36 0.02
890 8 0.00
891 54 0.03
892 262 0.16
893 102 0.06
894 26 0.02
895 39 0.02
896 133 0.08
897 63 0.04
898 6 0.00
899 84 0.05
900 153 0.09
901 22 0.01
902 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.27
Consensus pattern (875 bp):
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
GGAATGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTC
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGTGCACACCCCCCGGCCCCCCGATCTCCGGAACCCCAATGCCACCGGTCAGGTTCTCATCC
GGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCC
GCAACCCTCGGTTCCGATCTCAGACTGATGAACTCTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCGACCAGAGGGGCGGATGCGCAAGCCG
GGGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCTGCAACCTTGATCCGGTCAATC
TTAGACTGGGAATGAATCTCGTATTGCCAAACCAACCGACGAAACGAGCGGGCGGGCGGGCGGAC
TACCCCGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATTGCCAAATGCAT
Found at i:21872820 original size:26 final size:26
Alignment explanation
Indices: 21872791--21872841 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21872781 GGTCCGATCG
*
21872791 TAGACTGGGATTGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
21872817 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
21872842 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.20, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:21874058 original size:823 final size:823
Alignment explanation
Indices: 21872446--21874110 Score: 2179
Period size: 823 Copynumber: 2.0 Consensus size: 823
21872436 ATTCAGCTAA
* * *
21872446 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAAT
1 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
21872511 GGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTT
66 GGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTT
*
21872576 GATGAGGGATAGGGGCCAACATAAGGGCCAAGTACCATCACCCATCACACATCATGTGTGCACAC
131 GATGAGGGATAGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACAC
* ** * *
21872641 CCCCGGCCCCCCCAATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGGCG
196 CCCCGACCCCCCCAATCGTCAAAACCCCAATACCGTC-GT-A-G-----CGGCAATG--CT-G-G
* * *
21872706 ACGGTGCCCTGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCGGAATGTGCTGTCACAA
249 AC---GCCCTGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGAATGTGCTGCCACAA
* ** * * * * *
21872771 CCGTCGGTTTGGTCCGATCGTAGACTGGGATTGAACTCCGTATGCTTAGACTGGGAATGAACTCC
311 CCGTCAGTCCGATCCGATCGTAGACTGGGAATGAACTCCATAAGCTTAGACTGGGAATGAACTCA
* * * * * *
21872836 GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCACTAGAGGGGCGGGATGCGC
376 GTATGCCTAAGCCAACCCACGAAACAAGCGTACAGGCGCTCAGCCACCAGAGGGACAGGATGCGC
* ** * *
21872901 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCCATCCCGTTGCTGCAACCCTTGGTCTG
441 AAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCCACCCATCCCACTACAGCAACCCTTGGTCTG
* * * *
21872966 GTCCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGATGAAACGAACGGGTGGGC
506 GTCCGATCTTACACTGGGAATGAACTCTATAGGCCTAAGCCAACCGATGAAACGAACGGGCGGCC
* *
21873031 GGGCGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGCGGTGGATCGATAGGGTGGTAGGTG
571 GGGCGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTG
21873096 GGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAA
636 GGTTTAGGCACATCTTCACATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAA
*
21873161 TGGTCCCTTAAGCCGTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
701 TGGTCCCTTAAGCCGTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAATT
* * * * *
21873226 TTGAAACTTTCTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGTGTTTTGGCCCC
766 TTCAAACTTTCTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTCTGGCCCC
* * **
21873284 AAACTCAAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTTAAACACTTTTGT
1 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
* *
21873349 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
66 GGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTT
* * **
21873414 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCGTACATCATGTGTGCACA
131 GATGAGGGATA-GGGGCCAACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACA
21873479 CCCCTCCTGACCCCCCCAATCGTCAAAACCCCAATACCGTC-T-G-GG-AATG-T-G-C-CCC-G
195 -CCC-CC-GACCCCCCCAATCGTCAAAACCCCAATACCGTCGTAGCGGCAATGCTGGACGCCCTG
** * * * *
21873535 GTGAAGAAAAATGCGACACCAGGACTTG-CTCGAGCCCAGCATGTGCTGCCGCAACCGTCAGTCC
257 ACGAAGAAAAATGCGACACCAGCACATGCCT-GAGCCCAGAATGTGCTGCCACAACCGTCAGTCC
* * *
21873599 GATCTGATCTTAGACTGGGAATGAACTCCATAAGCTTAGATTGGGAATGAACTCAGTATGCCTAA
321 GATCCGATCGTAGACTGGGAATGAACTCCATAAGCTTAGACTGGGAATGAACTCAGTATGCCTAA
* * * *
21873664 GCCAAGCCACGAAACGAGCGTACAGGCGCTCAGCCGGCCAGAGGGACAGGATGCGCGAGCCGGGG
386 GCCAACCCACGAAACAAGCGTACAGGCGCTCAGCC-ACCAGAGGGACAGGATGCGCAAGCCGGGG
** * * * * * *
21873729 ATCGGTCGGGTCCCCTTCTGCGTGCCACCGATCCTACTACAGCAA-CCTTCCGT-TCGGTTCTAT
450 ATCGACCGGGTCCCCCTCTGCGTGCCACCCATCCCACTACAGCAACCCTT-GGTCT-GGTCCGAT
*
21873792 CTTACACTGGGAATGAACT-TCATAGGCCTAAGCCAACCGATGAAACGAGCTAGCGGGCGGCCTG
513 CTTACACTGGGAATGAACTCT-ATAGGCCTAAGCCAACCGATGAAACGA---A-CGGGCGGCCGG
* ** * *
21873856 GTGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTTGG
573 GCGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGG
* * * *
21873921 TTTTGGCACATCTTCATATTTCTGCATGCCAATTCAATTTTTATGGCTTGTGAATTCATACAATG
638 TTTAGGCACATCTTCACATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATG
* *
21873986 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACT-AATTT
703 GTCCCTTAAGCCGTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-TGAATTT
* *
21874050 TCAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTCTGGCCCC
767 TCAAACTTTCTACGGTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTCTGGCCCC
21874107 AAAC
1 AAAC
21874111 ATGGTAGACG
Statistics
Matches: 725, Mismatches: 88, Indels: 43
0.85 0.10 0.05
Matches are distributed among these distances:
817 2 0.00
818 143 0.20
819 114 0.16
822 1 0.00
823 241 0.33
824 2 0.00
827 1 0.00
830 3 0.00
831 2 0.00
837 1 0.00
838 132 0.18
839 48 0.07
840 4 0.01
841 2 0.00
842 29 0.04
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (823 bp):
AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT
GGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATAGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACAC
CCCCGACCCCCCCAATCGTCAAAACCCCAATACCGTCGTAGCGGCAATGCTGGACGCCCTGACGA
AGAAAAATGCGACACCAGCACATGCCTGAGCCCAGAATGTGCTGCCACAACCGTCAGTCCGATCC
GATCGTAGACTGGGAATGAACTCCATAAGCTTAGACTGGGAATGAACTCAGTATGCCTAAGCCAA
CCCACGAAACAAGCGTACAGGCGCTCAGCCACCAGAGGGACAGGATGCGCAAGCCGGGGATCGAC
CGGGTCCCCCTCTGCGTGCCACCCATCCCACTACAGCAACCCTTGGTCTGGTCCGATCTTACACT
GGGAATGAACTCTATAGGCCTAAGCCAACCGATGAAACGAACGGGCGGCCGGGCGGGCACTACAC
CAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCACATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCG
TCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAATTTTCAAACTTTCTACG
GTTCAGGATTTTTTAAAATTTTTTTGAAAGGAGTTCTGGCCCC
Found at i:21875449 original size:26 final size:26
Alignment explanation
Indices: 21875413--21875465 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21875403 CCGGTCTGAT
*
21875413 CTTAGACTGGGAATTAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
21875439 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
21875465 C
1 C
21875466 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:21876351 original size:26 final size:26
Alignment explanation
Indices: 21876313--21876363 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
21876303 GGTCTGATCG
21876313 TAGACTGGAAATGAACTCCGTATGCT
1 TAGACTGGAAATGAACTCCGTATGCT
*
21876339 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGAAATGAACTCCGTATGC
21876364 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGAAATGAACTCCGTATGCT
Found at i:21877172 original size:26 final size:26
Alignment explanation
Indices: 21877143--21877195 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21877133 CCGGTTCGAT
*
21877143 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21877169 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21877195 C
1 C
21877196 CAAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21878074 original size:26 final size:26
Alignment explanation
Indices: 21878043--21878094 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
21878033 CCGATCCGAT
21878043 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
* *
21878069 CTTAGACTGGGACTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
21878095 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:21878904 original size:905 final size:898
Alignment explanation
Indices: 21877053--21879000 Score: 2609
Period size: 905 Copynumber: 2.2 Consensus size: 898
21877043 CCCAATGCCG
*
21877053 TCCGACGATGGT-GCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
1 TCCGACGATGGTGGCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
21877117 TGCTGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATTAACTCCGTATGCTTAGACTGGGAA
65 TGCTGCAACCCT-GGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
21877182 TGAACTCCGTATGCCAAAGTCAAGCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGC
129 TGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCAGGACAGAGGGGC
* * * * * * *
21877247 GGGATGCGCAAGTCGGGGATCAACCGGGTCCCCATCTGCGTGCTGCCGATCCTGCTACCACAGCC
194 GGGATGCACAAGCCGGGGATCAACCGGGTCCCCATCTACATGCTGCCAATCCTACTACCACAACC
* * * * * *
21877312 CTCGGTCCAGTCCAATTTTAGATTGGGAATTAACTTCGTATGCCTAAGCCAACCGATGAAACGAG
259 CTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * ** * * * *
21877377 CGGGCGGGCGGGCGGGCACTATGTCGGCTAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGG
324 CGAGCGGGCGGGCAGGCACTACATCGACCAGAGAAACGAGATGCGCAAGCCGTGGATCGATAGAG
*** **
21877442 TGGCAGATGGGTTTAGGGTCATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
389 TGGCAGATGGGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
*
21877507 TTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
454 TTCATACAATGGTCCCCTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
21877572 TCACGATTTTCAAAACCTTTTACGGTTCAGGATTTTTTAAAATTTTTTGGGAAGGACTTTTGGCC
519 TCACGATTTTCAAAACCTTTTACGGTTCACGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCC
* *
21877637 CCAAACTTGGTAGACATGATCCTTGTATTTTTTCTGGCATGCACAAAAAAATTCAGCTAAAAACT
584 CCAAACTTGGCAGACATGATCCTTGTATTTTTTCTGGCATGCAAAAAAAAATTCAGCTAAAAACT
*
21877702 CGAAATGTACAAGATTCTGTGACAATTTGAAAAAAGTATCCCTATTTCAGACACTTTAATGGCTA
649 CGAAATGTACAAGATTCTGTGACAATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTA
* * *
21877767 CTGACAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGTGTGGGTTCTCAAATTTTGATGAG
714 CTGACAGCAAACCTATAAAATCTCAAAGGCTCTTTAAGGGGTGTGGGTTCTCAAAGTTTGATGAG
* * * * * *
21877832 GGATAGGGGGCCAATATAATGGCCAAGTACCAGCACTCATCACACATTATGTTCGCACACCCCCC
779 GGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCC
* ** * * *
21877897 CGAAACCCCTGATCGTCGGAACCCCAATGCCGCTGGTCAAGTTCTCTGGTGATGC
844 CGAAACCCCCGATCACCGGAACCCCAATGCCGCCGGTCAAGTTCTCTGATGATAC
* * * ** * * *
21877952 TCCGACGATCGTGCCCCAACGAAGAAAAATAAGGCACCAGTACATGCCCGAGCCTAGTATGTGCT
1 TCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
21878017 GCTGCAACACTGGGTTCCGATCCGATCTTAGACTGGGAATGAACTCCCTATGCTTAGACTGGGAC
66 GCTGCAACCCT-GG-TCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
21878082 TGAACTCCGTATGTCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTTAGCCGGACAGAGGGGC
129 TGAACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCAGGACAGAGGGGC
* **** * * *
21878147 GGGATGCACAAGCCTGGGATCGGTTGGGTCTCCC-TCTACATGGTGTCAATCCATACTACCGCAA
194 GGGATGCACAAGCCGGGGATCAACCGGGTC-CCCATCTACATGCTGCCAATCC-TACTACCACAA
** * *
21878211 CCCTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACG
257 CCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
21878276 AGCGAGCGGGCAGACGGGCAGGCACTACATCGACCAGAGAAACGAGATGCGCAAGCCGTGGATCG
322 AGCGAGC-GG--G-CGGGCAGGCACTACATCGACCAGAGAAACGAGATGCGCAAGCCGTGGATCG
* *
21878341 ATAGAGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
383 ATAGAGTGGCAGATGGGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
*
21878406 TGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
448 TGTAAATTCATACAATGGTCCCCTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * ** *
21878471 TATTTTTCATGATTTTCAAAACTTTTTGTGGTTCACGATTTTTTAAAATTTTTTCGGAAGGAGTT
513 TATTTTTCACGATTTTCAAAACCTTTTACGGTTCACGATTTTTTAAAATTTTTTCGGAAGGACTT
* *
21878536 TTGGCCCCAAACTTGGCAGACATGATCCTTGTATTTTTGT-TGGTATTCAAAAAAAAATTCAGCT
578 TTGGCCCCAAACTTGGCAGACATGATCCTTGTATTTTT-TCTGGCATGCAAAAAAAAATTCAGCT
* * * * * *
21878600 AAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAGAGTGTCCCCATTTCAGACACTTTA
642 AAAAACTCGAAATGTACAAGATTCTGTGACAATTTGAAAAAAGTATCCCCATTTCAGACACTTTA
* * *
21878665 ATGGCTACTGGCAGCAAACCTATAAAATCTCAAAGGCTCTTTAAGGGG-GTGAGAGTTCTCGAGG
707 ATGGCTACTGACAGCAAACCTATAAAATCTCAAAGGCTCTTTAAGGGGTGTG-G-GTTCTCAAAG
**
21878729 TTTGATGAGGGATAAGGGGCCAATA-AACGGGCCAAGTACCAGCACCCATCGTACATCATGTGCA
770 TTTGATGAGGGATAAGGGGCCAATATAA-GGGCCAAGTACCAGCACCCATCACACATCATGTGCA
* * ** * *
21878793 TACACCCCGCCG-GCCCACCCGATCACCGGAACCTCAATGCCGCCGGTCAGGTTCT-TCGATGAT
834 CACACCCCCCCGAAACC-CCCGATCACCGGAACCCCAATGCCGCCGGTCAAGTTCTCT-GATGAT
*
21878856 AT
897 AC
*
21878858 TTCGACGATGGTGGCCCGACGAAGAAAAATGCGG-ACCAGCACATGCCCGAGCCCAGCATGTGCT
1 TCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * * * * *
21878922 TCCGTAACCCTCGGT-CTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAA
66 GCTGCAACCCT-GGTCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
21878986 TGAACTCCGTATGCC
129 TGAACTCCGTATGCC
21879001 GTGGATCGGT
Statistics
Matches: 902, Mismatches: 132, Indels: 25
0.85 0.12 0.02
Matches are distributed among these distances:
899 63 0.07
900 141 0.16
901 72 0.08
902 2 0.00
903 2 0.00
904 60 0.07
905 426 0.47
906 136 0.15
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (898 bp):
TCCGACGATGGTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
GCTGCAACCCTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
AACTCCGTATGCCAAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCAGGACAGAGGGGCGG
GATGCACAAGCCGGGGATCAACCGGGTCCCCATCTACATGCTGCCAATCCTACTACCACAACCCT
CAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
AGCGGGCGGGCAGGCACTACATCGACCAGAGAAACGAGATGCGCAAGCCGTGGATCGATAGAGTG
GCAGATGGGTTTAGACACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
CATACAATGGTCCCCTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
ACGATTTTCAAAACCTTTTACGGTTCACGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCC
AAACTTGGCAGACATGATCCTTGTATTTTTTCTGGCATGCAAAAAAAAATTCAGCTAAAAACTCG
AAATGTACAAGATTCTGTGACAATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACT
GACAGCAAACCTATAAAATCTCAAAGGCTCTTTAAGGGGTGTGGGTTCTCAAAGTTTGATGAGGG
ATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCACACACCCCCCCG
AAACCCCCGATCACCGGAACCCCAATGCCGCCGGTCAAGTTCTCTGATGATAC
Found at i:21878986 original size:26 final size:26
Alignment explanation
Indices: 21878947--21878999 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21878937 CTAGTCTGAT
*
21878947 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
21878973 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
21878999 C
1 C
21879000 CGTGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:21881237 original size:26 final size:26
Alignment explanation
Indices: 21881208--21881260 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21881198 CTAGTCCGAT
*
21881208 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGAAATGAACTCCGTATG
*
21881234 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGAATGGAAATGAACTCCGTATG
21881260 C
1 C
21881261 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGAAATGAACTCCGTATG
Found at i:21882141 original size:26 final size:26
Alignment explanation
Indices: 21882112--21882164 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21882102 CCGATCTGAT
*
21882112 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21882138 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21882164 C
1 C
21882165 CGAAACCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21882886 original size:26 final size:26
Alignment explanation
Indices: 21882850--21882902 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21882840 TTGGTCTGAT
21882850 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21882876 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21882902 C
1 C
21882903 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21887034 original size:902 final size:898
Alignment explanation
Indices: 21882138--21892728 Score: 13054
Period size: 902 Copynumber: 11.8 Consensus size: 898
21882128 ACTCTGTATG
* * * * * *
21882138 CTTAGATTGGGAATGAACTCCGTATGCCGAAACCAACCGACGAAACGAGCGTGCGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* * * *
21882203 CACTATGCC-AGCCAGAGAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTT
66 CACTACGCCGA-CCAGAGAGACGGGAT-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * * *
21882267 GGTACATCTTCATATTTCTGCATGCCAATGTCGTTTTTATGGCTTGTAAATTCATACAATGTTCC
129 GGAACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * **
21882332 CTTAAGCCTTCACGTGATGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
194 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* *
21882397 CTTTTTACGGTTCGGGATTTCTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAACTTGGTAGA
259 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
21882461 AGTGATCTTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
323 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
21882526 TTTTGTGACCATTTGAGAAAAGTGTACCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
388 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
21882591 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCA
453 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
21882656 ATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGAGCACAACCCCTGG--CCCCCAATC
518 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * * * *
21882719 ACCGGACCCCCAATGCTGCCGGTTAGGTTCTCTGGCGATGCTCC-AGCGATGGTGCCCCGACGAA
583 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAA
* ** * * **
21882783 GAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTACCATAACCCTTGGTTTGGTCTG
647 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCA
* *
21882848 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCTTATGCCTAAGTTAAC
712 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * ** * *
21882913 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGTAGGATGC-CGAAGTCGGGGATTGG
777 CCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC-AAGCCGGGGATCGG
* * * * * * ** * **
21882977 CCGGGTCCCCCTCTGTGAGCTGCCAATCCTGTTGCTGCAACCCTCAATCCAGTCTAAT
841 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGAT
* *
21883035 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG--A-AA-----CGAGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* *
21883092 CACTACGTCGACCAGAGAGACGGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGACCAGAGAGACGGG-ATCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *** *
21883157 GCACATCTTCATATTTTTGTGTGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCC
130 GAACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
21883222 TTAAGCCTTCACGCGAAGTTTCATGGCAAGACGAGTCGTTTTCTATTTTTCATGATTTTTGAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * *
21883287 TTTTTCCGGTTC-AGATTTTTTAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
260 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
21883351 TGATCCTTGTATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
325 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
21883415 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
21883480 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATATGGGGCCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * *
21883545 ATAAGGGCCAAGTACCAGCACGCATCGCACATCATGTGCACACACCCCTCCGGCACACCCGATCG
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCCCGATCG
* * * ** * * **
21883610 TCGAAACCCGAATGCCGTAGGTCAGGTTCTCCGACGATGCTCC-AGTGATGGTGCCTCGGTGAAG
584 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAG
* * * ** *
21883674 AAAAATGCGACACCGGTGCATGCCCGAGCCCAGCATGTGCTACCACAA-CC-C--TC-GG-----
648 AAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAA
*
21883729 TC-----C-----A-G---TCCG-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
713 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
** * * * *
21883778 CATGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCTGGGGATC-GAC
778 CACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC
* * * * * * *
21883842 TGGGTCCCTCTCTACGTGCTACCAATCCTTCTACTGCAACCCTCAGTCCAGTCCGAT
843 -GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGAT
* * * *
21883899 CTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* * *
21883964 CACTACGCCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCTATAGGGTGATAGGTGGGTTTAG
66 CACTACGCCGACCAGAGAGACGGGAT-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
21884029 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCC
130 GAACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * * *
21884094 TTAAGCCTTCACGTGAAGTTTCATGGCAAGATGGCCCATTTTCTATTTTTCACGATTTTTGAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * * *
21884159 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGGCCCCAAACTTGGTAGACG
260 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * **
21884224 TGATCCTTGTATTTTTATTGGCATGCACAAAACAATTCAATTAAAAACTCGAAGTGTACAAGATT
325 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
21884289 TTGTGACCATTTGAAAAAGGTGTCCCCATTCCAAACACTTTAATGGCTACTGGCAGCAAACCTGT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
21884354 AAAATCTCAAATGCTCTTTTAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGAGTCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * * * *
21884419 ATAAGGGCCAAGTACCAACACCCATTGCATATCATGTGCGCACAACCCCTCGGCCCCTCTGATCA
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCGGCCCCCCCGATCG
* * ** *
21884484 CCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGTGGATGGTGCCCCGACAAAGA
584 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
* *
21884549 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCGTCGGTCTGGTCCGAT
649 AAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAAT
*
21884614 CTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTAT-CCTAAGTCAACCC
714 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** * *
21884678 ATAAAATGAGCGTGCGGGCGCTCAGCCAACCAGATGGGCGGGATGCGCAAGCTGGGGATCGGTCG
779 ACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCG
* * *
21884743 GGTCCCCCTCTGTGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGATCCAAT
844 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGAT
* * **
21884798 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATG--A-AA----GATGG-GGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* * * * *
21884855 CATTACACCGGCCAGA-AGATGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAG
66 CACTACGCCGACCAGAGAGACGGGAT-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** *
21884919 GTAA-ATCTTCATATTTCTACGTGCCAATTTCATTTTTATTGCTTGTAAATTCATACAATGGTCC
130 G-AACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * *
21884983 CTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAGGA-TTTTCAAA
194 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
* * * *
21885047 TCTTTTTGCGGTTTGGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGA
259 -CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
21885112 CGTGATCCTTATAATTTTT-TTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
323 CGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * ** *
21885176 ATTTTGTGACCATTTGAAAAAATTGTCCCTAATTCAGACACTTTAGCGGCTACTGGCAGCAAACT
387 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
21885241 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
452 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
21885306 AATATAAGTGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACAACCGCCCCGGCACCCCCG
517 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACC-CCCCGGCCCCCCCG
* * *
21885371 ATCGCCGGAAACCCAATGCTGCCGGTTAGGTTCTTTGACGATGCTTCGACGATGCTCCGACGATG
580 ATCGCCGGAACCCCAATGCCGCCGGTCAGG----TT--C--T-C--CGACGATGCTCCGACGATG
* * * **
21885436 GTGCCCTGGCGAAGAAAAATGTGGCACCAGCACATGCCCGGGCCCAGCATGTGCTGTCGCAACCC
634 GTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
* * * * * * *
21885501 TCGATCCGATCCGATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACTTCGTA
699 TCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * *
21885566 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCACAA
764 TGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* ** ** * *
21885631 GCCGGGGATCGGTCGGGTCCCCATCTATGTGCTGCTAATCCTGCTGCTGCAACCCTTGGTCCGGT
829 GCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGT
*
21885696 CTGAT
894 CCGAT
* * *
21885701 CTTAGACTGGGAATGAACTCCGTGTGCCTAAGCTAACCGACGAAACAAGTGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* * * *
21885766 CACTACGCCGGCCAGAGAGACGAGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTAG
66 CACTACGCCGACCAGAGAGACGGGAT-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** * * *
21885831 GAACATCTTCATATTTCTATGTGCGAATGCCATTTTTATGGCTTGTAAATACATACAATGGTCCA
130 GAACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
**
21885896 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * ** *
21885961 TTTTTACGGTTCGGGATTTTTTAAAAGTTTTTCGAAAGGAGTTTTCACCCCAAACTTGGTAGACA
260 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
21886026 TGATCCTTGTATTTTTGTTGGAATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAACATT
325 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * *
21886091 TTGTGTCCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAACCTAT
390 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
21886155 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAGGTTTGATGAGGGATA-GGGGCCAAT
455 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
21886219 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCA
520 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCG
* ** * * * *
21886284 CCTGAACCCCAATGGTGCCGATCAGGTTCTCCGGCGATGCTCCGACAATGGTGCCCCGGCGAAGA
584 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
** * * *
21886349 AAAATACGGCTCCAGCACATG-TCGAAAGCCCAGCATGTGCCACCGCAACCCTCGGTCTGGTCCA
649 AAAATGTGGCACCAGCACATGCCCG--AGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCA
*
21886413 ATCTTAGACTGGGAATGAACTCC-TATGGC-TAGACTGGGAATGAACTCTGTATGCCTAAGTCAA
712 ATCTTAGACTGGGAATGAACTCCGTAT-GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* *
21886476 CCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGTAGGATGCACAAGTCGGGGA
776 CCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC--G--GGATGCGCAAGCCGGGGA
* * * * * ** * * *
21886541 TCAG-CTGGGTCCCCCTCTGTGTGCTGCCAATCCTGCTGCTACAACCCTCAATCTGATCCAAT
837 TCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGAT
* * *
21886603 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCGAGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* ** * * *
21886668 CTCTACATCGACGAGAGAGACGGGAT-GTAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGG
66 CACTACGCCGACCAGAGAGACGGGATCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * *
21886732 AACATCTTCATATTTCTGCATGCCAAAGCCATTTTTACGGCTTGTAAATTCATACAATGG-CCTC
131 AACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-C
* * * *
21886796 TTAAGCCTTGACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTTTTGAAA
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA-TTTTTGAAA
* * *
21886861 CCTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTTGCCCCAAACTTGGTAGAC
259 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
21886926 GTGATCCTTGTACTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGAT
324 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
21886991 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGATACTTTAATGGCTACTGGCAGCAAACTTG
389 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
21887056 TAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGCGATAGGGGGCCAA
454 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
21887120 TATAAGGGCCAAGTACCAGCACCCAACGCACATCATGTGCGCACACCCCCCCGGCACCCCCGATC
519 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATC
* * * *
21887185 GCCAGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCG-TGTATGGTGCCCCGACGAA
583 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG-ATGGTGCCCCGACGAA
*
21887249 GAAAAATGTGGCACCAGCACATGCCCTAGCCCAGCATGTGCTACCGCAA-CC-C--TC-GG----
647 GAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCA
21887305 ----T---CT-GG--T----T-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
712 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * ** * *
21887353 CCATAAAACGAGCGTACGGGCACTCAACCAACCAGATGGGCGGGATGCGCAAGCTGGGGATCGGT
777 CCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
* * * * *
21887418 CGGGTCCCCCTCTGTGTGCTGCCGATCTTGCTATTGCAACCCTCGGTCCGATCCAAT
842 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGAT
* * *
21887475 CTTAGAATAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGGCGGAG-GG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A--A-GCGGGCGG-GCGG
* * * *
21887539 GCGGGCATTACACCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
61 GCGGGCACTACGCCGACCAGAGAGACGGGAT-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
21887604 TTTAGGCAA-ATCTTCATATTCCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
125 TTTAGG-AACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
** * * * *
21887668 GGTCTTTTAAGCATTCACATGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCAGGA-TTT
189 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * * *
21887732 TCAAATCTTTTTGCCGGTTTGGGATTTTTTAAACTTTTTTCGGAAGGATTTTTGGCCCCAAACTT
254 TGAAA-CTTTTTG-CGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* *
21887797 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAACTAAAAACTCGAAGTGG
317 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT-G
*
21887862 T-CAA-TTTTTGTGACCATTTGAAAAAAGTGT-CCCA-TTCTAGACACTTTAATGGCTACTGGCA
381 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGGCA
* * *
21887923 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTAGATGAGCGATA
445 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
21887988 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGAACATCATGTGCGCACACCCCCCGGCAC
510 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
*** * ** * ** * * **
21888053 CTTTGATGGCCAAAACCCTAATGCCATCGGTCAGGTTCTTCGGCGATGCTCCTTCGATGGTGCCC
575 CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * *
21888118 CGATGAAGAAAAATGTGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTC
640 CGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
* *
21888183 TGGTCCGATCTTAGA-T-----TG------G---G---A-A-T--G-A-G--CTCCATATGCCTA
705 TGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
21888222 AGTCAACCAACAAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGAG
770 AGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* * * *
21888287 GATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGAT
835 GATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGAT
* * *
21888351 CTTAGACAGGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAATGAGCAGACGCGGGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CA-A-GCGGGCGGGCG
* * * *
21888416 GGCGGGCGCTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
60 GGCGGGCACTACGCCGACCAGAGAGACGGGAT-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * * * **
21888481 GTTTAGGCACATCCTCATATTTTTGCATTCTGATGCCATTTTTATGGCTTGTAAATTCATACAAT
124 GTTTAGGAACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
21888546 GGTCCCTTAAGCCTTCACGTGGAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCATGATTTT
189 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* *
21888611 GGAAAGCTTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTCG-AAGGAGTTTTGGCCCCAAACT
254 TGAAA-C-TTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACT
* * * *
21888675 TGGTAAACGGGATCCTTGTACTTTTT-TTGGCATGCTA-AAAAAAAATCAGCTAAAAACTGGAAG
316 TGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAG
21888738 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
379 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
21888803 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGAT
444 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
21888868 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACTGCCCCCTG
509 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC--CCCCCGG
* * ** * *
21888933 -CCCCCCGATCGCTGGAACCCTAATGCCGCTAGTCAGGTTCTCCGACGATGCTCTGGCGATGGTG
572 CCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
* * * * * * *
21888997 CCCTGGCGAAGAAAAATGCGGCACCAGCACATTCCCGAGCCCAGCATGTGCCACCGTAACCCT-T
637 CCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCG
* *
21889061 GTTTGGTCCAATCTTAGACTGGGAATGAACTCC-TATGGTTAGACTGGGAATGAACTCCGTATGC
702 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
21889125 CTAATTCAACCCACAAAACGAGCGTACGAGCGTTCAGCCGGCCAGAGTGGCAGGATGCGCAAGCC
767 CTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * ** ** ** *
21889190 GGGGATCGGTCGGGTCCACCTCTGCGTGCTGTCGATCTTGCTACCACAACCCTCTATTTGGTCTG
832 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCG
21889255 AT
897 AT
* * *
21889257 CTTAGACTGGGAATGGACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGGGCGAGCGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGC--G-GG-CGGG
* * * *
21889322 CGGGCACTACGTC-AGCCAGAGAGACGGGATGCGCAAGCCGTGGATCAATAGGGTGGTAAGTGTG
62 CGGGCACTACGCCGA-CCAGAGAGACGGGAT-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * * * *
21889386 TTTGGGCACATCTTCAAATTTTTGCCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
125 TTTAGGAACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
21889451 GTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTT
190 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * *
21889516 TAAACTTTTTACGGTTCGGGATTTTTTAAAATGTTTTCGAAAGGATTTTTGG-CCCAAACTTGGT
255 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
21889580 AGTCATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGATGTGTACA
320 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
21889645 AGATTTTGTGACCATTTGAAAAAAGTGGCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
21889710 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGACTTCTCGAGGTTTAATGAGGGATAGGGGG
450 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
21889775 CCAATATAAGGGCCAAGTACCAGCACCCTTCACACATCATGTGCACACACCCCCCGGCCCCCCCG
515 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * ** * *
21889840 ATCGCCGGAACCCCAAAGCCGTCTGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGGCG
580 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* * *
21889905 AAGAAAAATGTGGCACCTGCACATGCCCGAGCCCAGCATGTGCTACTGCAACCTTCGGTTGGGTC
645 AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACC--C---TCGG--
* *
21889970 TAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCTTAGACTG
703 ------T---CT--G---G---TCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * *
21890035 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGCCGTCTAGAG
749 GGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * *
21890100 GGGCAGGATGCGTAAGCCGAGGATCGGAT-GGGT-CCCCTCTGCGTGCTGCTGATCCTGCTACCG
814 GGGCGGGATGCGCAAGCCGGGGATCGG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTG
* **
21890163 TAACCCTCAATCCGGTCCGAT
878 CAACCCTCGGTCCGGTCCGAT
** *
21890184 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGTTGGCGGGGCGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC--G--GGC-GGGCGG
* * * *
21890249 GCGGGCACTACGTCGGA-TAAAGAGACGGGCTACGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
61 GCGGGCACTACG-CCGACCAGAGAGACGGGAT-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
21890313 GTTTAGGAA-ATCTTCATAATTT-TTCATGCCAATGCCATTTTTATGGCTTGTAAATTCAAACAA
124 GTTTAGGAACATCTTCAT-ATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
21890376 TGGTCCCTTAAGCCTTCACGTTG-AGGTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
188 TGGTCCCTTAAGCCTTCACG-TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
** * *
21890440 TTTGAAACTTTTTGTTGTTCGAGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTT
252 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
*
21890505 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGT
317 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
21890570 ACAAGATTTTGTGA-CATTTGAAAAAA-TGTCCCCATTTCAGACACTTTAAT-GCTACACTGGCA
382 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT--ACTGGCA
* * *
21890632 GCAAACCTATAAAATCTGAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
445 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
21890697 GGGGGCCAATATAGGGGCCAAGTACCAGCACCCATTGCACATCCTGTGCACACACCCCCCGGCCC
510 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * * * *
21890762 CCCCGATCACCGGAACCTCAATGCCCCCGATCAGGTTCTCCGACGATGCTCC-AGTGATGGTGCC
575 CCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCC
* ** * * * *
21890826 TC-AGCGAAGAAAAATACGACACCAGCATAT-CCTCGAGCCCAGCATGCGCTACTGCAACCCTCG
639 CCGA-CGAAGAAAAATGTGGCACCAGCACATGCC-CGAGCCCAGCATGTGCTACCGCAACCCTCG
* *
21890889 GTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGC
702 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
*
21890954 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
767 CTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * * * * *
21891019 GAGGATCGACCGGGTCCCCCTCTGCATGCTACCGATCCTACTGCTGCAACCCTCGGTCTGGTCTG
832 GGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCG
21891084 AT
897 AT
* * * * *
21891086 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC----CAAACGAGTGAGAGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
* * * * * * *
21891147 CACTACGTCGGCCAAAGAGACGGGATGCGCAAGTCGTGGATCGATTGGGTGGTAGTTGAGTTTAG
66 CACTACGCCGACCAGAGAGACGGGAT-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
21891212 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATAGTCCC
130 GAACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
21891277 TTAAGCCTTCACGTGTAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAAC
195 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* **
21891342 TTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCGGAAA-GAGTTTTGGCCCCAAACTTGGTAGA
260 TTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
21891406 CATGATCCTTGTATTTTTGTTGGCATGCACAACAAAAA-TCAGCTAAAAACTCGAAGTGTACAAG
323 CGTGATCCTTGTATTTTTGTTGGCATGCACAA-AAAAATTCAGCTAAAAACTCGAAGTGTACAAG
21891470 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAAGCAAAC
387 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC-AGCAAAC
* * *
21891535 CTGTAAAATCTCCAAATGCTCTTCAAAGGGGT-TGAGTTCTTGAGGTTTTGATGAGGGATAGGGG
451 CTGTAAAATCT-CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGATGAGGGATAGGGG
* *
21891599 GCCAATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCGACCCCCCC
514 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * * *
21891664 GATCGTCGGAACACCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGAC
579 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * *** *
21891729 GAAGAAAAATGTGACACCGGCACATGCCCGAGCCCAGCATGTGCTGCTATAACCCTC-GTTTGGT
644 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGT
* * *
21891793 TCAATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTCCGTATGCCTAAGTC
709 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
21891858 AACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAAAGGGGCGGGATGAGCAAGTCC-GGGAT
774 AACCCACAAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-CCGGGGAT
* * ** * * * *
21891922 CGGTCGGATCCCCCTTTGCAAGCTACCGATCTTGCTATTGCAACCCTCGGTCCGGTCTGAT
838 CGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGAT
* ** * * *
21891983 CTTAGACTAGGAATGAACTCCGTATGGTTAAGCCAACCGATGAAACGAGCGGGTGGGCGGGCGTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC----GGGCGGGCGGG
* * * * *
21892048 CGGGCACTATGTC-AGCCAGAGTGACGGGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGT
62 CGGGCACTACGCCGA-CCAGAGAGACGGGAT-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
21892112 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATG
125 TTTAGGAACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * ** *
21892177 GTCCCTTAAGCCTTCTCCTGAAGTTTCATGGTGAGACGACTCGTTTTCTATTTTTCATGATTTTC
190 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * *
21892242 GAAACATTTTGAGGTTTGGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGCCCCAAACTTGG
255 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGG
* * *
21892306 TAGACCTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCTAAAAACTCGAAGTGTAC
319 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
21892371 ACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAACGGCTACTGGCAGCAA
384 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * ** * *
21892436 ACCTGAAAAATGTAAAAATTTTCATTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGG
449 ACCTGTAAAATCT-CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * *
21892501 GGCCAATATAAGGGCCAAGTACAAGTACCCATCGCACATCATGCGCGCACAACCCCCGGCCCCCC
513 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * * * * * * * *
21892566 CGATCACCTGAACCCCAACGCTGTCGGTCGGGTTCTCCGACGATGCTCTGGCGATGGTTCCTCGA
578 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * * * * * *
21892631 CGAAGAAAAATGCGACACCAGAACATGCCTGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCTGG
643 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGG
* *
21892696 TCCGATCTTAGACTAGGAATGAACTCCGTATGC
708 TCCAATCTTAGACTGGGAATGAACTCCGTATGC
21892729 CTAAGCCAAC
Statistics
Matches: 8456, Mismatches: 983, Indels: 503
0.85 0.10 0.05
Matches are distributed among these distances:
863 2 0.00
864 173 0.02
865 3 0.00
866 5 0.00
867 1 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 306 0.04
873 67 0.01
874 306 0.04
875 11 0.00
876 438 0.05
877 126 0.01
878 430 0.05
879 108 0.01
880 51 0.01
881 159 0.02
882 106 0.01
883 7 0.00
884 5 0.00
885 4 0.00
886 1 0.00
887 216 0.03
888 66 0.01
889 203 0.02
890 521 0.06
891 63 0.01
892 4 0.00
893 69 0.01
894 126 0.01
895 113 0.01
896 29 0.00
897 310 0.04
898 328 0.04
899 223 0.03
900 289 0.03
901 561 0.07
902 612 0.07
903 379 0.04
904 378 0.04
905 198 0.02
906 162 0.02
909 39 0.00
910 55 0.01
911 126 0.01
912 273 0.03
913 7 0.00
914 2 0.00
917 1 0.00
919 1 0.00
922 4 0.00
925 7 0.00
926 28 0.00
927 496 0.06
928 246 0.03
929 4 0.00
930 2 0.00
931 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
CACTACGCCGACCAGAGAGACGGGATCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
AACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCAATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
AAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
TCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCGGTCCGAT
Found at i:21889108 original size:25 final size:26
Alignment explanation
Indices: 21889074--21889123 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 26
21889064 TGGTCCAATC
21889074 TTAGACTGGGAATGAACTCC-TATGG
1 TTAGACTGGGAATGAACTCCGTATGG
21889099 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
21889124 CCTAATTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 20 0.83
26 4 0.17
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGG
Found at i:21890010 original size:26 final size:26
Alignment explanation
Indices: 21889974--21890052 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
21889964 TGGGTCTAAT
21889974 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21890000 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21890026 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21890052 C
1 C
21890053 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21890866 original size:927 final size:910
Alignment explanation
Indices: 21888193--21892728 Score: 5681
Period size: 927 Copynumber: 5.0 Consensus size: 910
21888183 TGGTCCGATC
* * * * * *
21888193 TTAGATTGGGAATGAGCTCCATATGCCTAAGTCAACCAACAAAATGAGCGTGCGGGCGCTCAGTC
1 TTAGA-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
21888258 GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCT
65 GGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCT
* * * *
21888323 GCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACAGGGAATGAACTCTGTATGCCTAAGCCAAC
130 GCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * **
21888388 CGATGAAATGAGCAGACGCGGGCGGGCGGGCGGGCGCTACACCGGCCAGAGAGACGGGATGCGCA
195 CGACGAAACGAGC-G--GGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * * **
21888453 AGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTTTGCATTCTGATGCC
257 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTT-CATGCCAATGCC
* *
21888518 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTCATGGTAAGA
321 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
21888583 CGACTCGTTTTCTATTTTTCATGATTTTGGAAAGCTTTTTTGCGGTTCGAGATTTTTTAAAATTT
386 CGACTCGTTTTCTATTTTTCATGATTTTTGAAA-C-TTTTTGCGGTTCGAGATTTTTTAAAA-TT
* * **
21888648 TTTTC-GAAGGAGTTTTGGCCCCAAACTTGGTAAACGGGATCCTTGTACTTTTT-TTGGCATGCT
448 TTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTGTTGGCATGC-
* *
21888711 A-AAAAAAAATCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
511 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
21888775 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
576 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
21888840 TGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
641 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT
** * * * *
21888905 GCACATCATGTGCGTACACTGCCCCCTG-CCCCCCGATCGCTGGAACCCTAATG-CCGCTAGTCA
706 GCACATCATGTGC--ACACACCCCCCGGCCCCCCCGATCGCCGGAACCC-AATGCCCCCGA-TCA
* * * *
21888968 GGTTCTCCGACGATGCTCTGGCGATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATTCCC
767 GGTTCTCCGACGATGCTC-CGTGATGGTGCCC-GGCGAAGAAAAATGCGACACCAGCACATGCCC
* * * *
21889033 GAGCCCAGCATGTGCCACCGTAACCCTTGTTTGGTCCAATCTTAGACTGGGAATGAACTCC-TAT
830 GAGCCCAGCATGTGCTACTGTAACCCTCGGTTGGT-CAATCTTAGACTGGGAATGAACTCCGTAT
21889097 G----G--T-T-A---G
894 GCTTAGACTATGACGTG
* * * * * *
21889103 --A-CTGGGAATGAACTCCGTATGCCTAATTCAACCCACAAAACGAGCGTACGAGCGTTCAGCCG
1 TTAGATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
21889165 GCCAGAGTGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCACCTCTGCGTGCTG-TCGATCTT
66 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCT-GATCCT
* ** * *
21889229 GCTACCACAACCCTCTATTTGGTCTGATCTTAGACTGGGAATGGACTCCGTATGCCTAAGCCAAC
130 GCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
21889294 CTACGAAACGAGCGGGCGAGCGGACGGGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAG
195 CGACGAAACGAGCGGG-GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * * * * *
21889359 CCGTGGATCAATAGGGTGGTAAGTGTGTTTGGGCACATCTTCAAATTTTTGCCTGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTT-CATGCCAATGCCAT
*
21889424 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGTCTTCACGTGAAGTTTCATGGCAAGACG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
21889489 ACTCATTTTCTATTTTTCATGATTTTTTAAACTTTTTACGGTTCGGGATTTTTTAAAATGTTTTC
388 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* * * *
21889554 GAAAGGATTTTTGG-CCCAAACTTGGTAGTCATGATCCTTGTATTTTTGTTGGCATGCATAAAAA
453 AAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
21889618 AATTCAGCTAAAAACTCGATGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGGCCCCATTTCA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
21889683 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGCGTGACT
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* *
21889748 TCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-TTCACACAT
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT-GCACAT
* * *
21889812 CATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAAAGCCGTCTG-TCAGGTTCTCC
712 CATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAA-CCCAATGCC-CCCGATCAGGTTCTCC
** * * *
21889876 GGTGATGCTCCGATGATGGTGCCCCGGCGAAGAAAAATGTGGCACCTGCACATGCCCGAGCCCAG
775 GACGATGCTCCG-TGATGGTG-CCCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
* *
21889941 CATGTGCTACTGCAACCTTCGGTTGGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
838 CATGTGCTACTGTAACCCTCGGTT-GGTC-AATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
21890006 CTGGGAATGAACTTCGTATG
901 CT----ATG-A---CG--TG
* *
21890026 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCATGCGGGCGCTCAGC
1 -TTAGA-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
21890091 CGTCTAGAGGGGCAGGATGCGTAAGCCGAGGATCGGAT-GGGT-CCCCTCTGCGTGCTGCTGATC
64 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGG-TCGGGTCCCCCTCTGCGTGCTGCTGATC
* ** * *
21890154 CTGCTACCGTAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
128 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * ** * * *
21890219 ACCGACGAAATGAGCGGGTTGGCGGGGCGAGCGGGCACTACGTCGGATAAAGAGACGGGCTACGC
193 ACCGACGAAACGAGCGGG-GGGC-GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
*
21890284 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG-AAATCTTCATAATTTTTCATGCCAATGC
256 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTTTTCATGCCAATGC
* *
21890348 CATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTTG-AGGTTCATGGCAA
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG-TGAAGTTTCATGGCAA
**
21890412 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTTGTTCGAGATTTTTTAAAATTT
384 GACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTT
*
21890477 TTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
449 TTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
*
21890542 AAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA-CATTTGAAAAAA-TGTCCCCAT
514 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
21890605 TTCAGACACTTTAAT-GCTACACTGGCAGCAAACCTATAAAATCTGAAATGCTTTTTAAGGGGGT
579 TTCAGACACTTTAATGGCT--ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
*
21890669 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACCAGCACCCATTG
642 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTG
* *
21890734 CACATCCTGTGCACACACCCCCCGGCCCCCCCGATCACCGGAACCTCAATGCCCCCGATCAGGTT
707 CACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAACC-CAATGCCCCCGATCAGGTT
* * *
21890799 CTCCGACGATGCTCCAGTGATGGTGCCTCAGCGAAGAAAAATACGACACCAGCATAT-CCTCGAG
771 CTCCGACGATGCTCC-GTGATGGTGCC-CGGCGAAGAAAAATGCGACACCAGCACATGCC-CGAG
* *
21890863 CCCAGCATGCGCTACTGCAACCCTCGGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
833 CCCAGCATGTGCTACTGTAACCCTCGG-TTGGT-CAATCTTAGACTGGGAATGAACTCCGTATGC
21890928 -T----TA-GAC-TG
896 TTAGACTATGACGTG
21890936 ---GA----AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
1 TTAGATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
** * * * *
21890994 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGACCGGGTCCCCCTCTGCATGCTACCGATCCTA
66 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTG
* *
21891059 CTGCTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
131 CTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * *
21891124 GACCAAACGA-------GTGAGAGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCAAGTC
196 GACGAAACGAGCGGGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
* * * *
21891182 GTGGATCGATTGGGTGGTAGTTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
261 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTCATGCCAATGCCATTT
* * * *
21891247 TTATGGCTTTTAAATTCATACAATAGTCCCTTAAGCCTTCACGTGTAGTTTCATGGCAAGATGAC
325 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
21891312 TCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCAAGATTTTTTTAAAATTTTTTCG
390 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGA-TTTTTTAAAATTTTTTC-
*
21891377 GAAA-GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAACAA
453 AAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA-AA
21891441 AAA-TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
21891505 AGACACTTTAATGGCTACTGGCAAGCAAACCTGTAAAATCTCCAAATGCTCTTCAAAGGGGT-TG
582 AGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCT-CAAATGCTCTTTAAGGGGGTGTG
*
21891569 AGTTCTTGAGGTTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCT-C
645 AGTTCTCGAGG-TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-TGC
* * * *
21891633 ACATCATGTGCGCACACCCCCCGACCCCCCCGATCGTCGGAACACCAATGCCGCC-AGTCAGGTT
708 ACATCATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAAC-CCAATGCCCCCGA-TCAGGTT
* * *
21891697 CTCCGACGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGTGACACCGGCACATGCCCGAGC
771 CTCCGACGATGCTCCG-TGATGGTG-CCCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGC
* * * *
21891762 CCAGCATGTGCTGCTATAACCCTCGTTTGGTTCAATCTTAGATTGGGAATGAACTCCGTATGCTT
834 CCAGCATGTGCTACTGTAACCCTCGGTTGG-TCAATCTTAGACTGGGAATGAACTCCGTATGCTT
21891827 AGAC--TG--G-G
898 AGACTATGACGTG
*
21891835 --A-AT-----T-AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCG
1 TTAGATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * ** * * *
21891891 GCCAAAGGGGCGGGATGAGCAAGTCCG-GGATCGGTCGGATCCCCCTTTGCAAGCTACCGATCTT
66 GCCAGAGGGGCGGGATGCGCAAG-CCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCT
** * * **
21891955 GCTATTGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGGTTAAGCCAAC
130 GCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
21892020 CGATGAAACGAGCGGGTGGGCGGGCGTGCGGGCACTATGTCAGCCAGAGTGACGGGATGCGCAAG
195 CGACGAAACGAGCGGG-GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
* * *
21892085 CCGTGGATCGATAGGGTCGTAGGTGGTTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
259 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTCATGCCAATGCCAT
* * * **
21892150 TGTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCCTGAAGTTTCATGGTGAGACG
323 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * *
21892215 ACTCGTTTTCTATTTTTCATGATTTTCGAAACATTTTGAGGTTTGGGATTTTTTAAAATTTTTTC
388 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
* * *
21892280 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
453 AAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
21892345 TATTCAGCTAAAAACTCGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
518 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * ** * *
21892410 GACACTTTAACGGCTACTGGCAGCAAACCTGAAAAATGTAAAAATTTTCATTAAGGGGGTGTGAC
583 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT-CAAATGCTCTTTAAGGGGGTGTGAG
* * *
21892475 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGTACCCATCGCACAT
647 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACAT
* * * * * * *** * *
21892540 CATGCGCGCACAACCCCCGGCCCCCCCGATCACCTGAACCCCAACGCTGTCGGTCGGGTTCTCCG
712 CATGTGCACACACCCCCCGGCCCCCCCGATCGCCGGAA-CCCAATGCCCCCGATCAGGTTCTCCG
* * * * * *
21892605 ACGATGCTCTGGCGATGGTTCCTCGACGAAGAAAAATGCGACACCAGAACATGCCTGAGCCCAGC
776 ACGATGCTC-CGTGATGGTGCC-CGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
* * *
21892670 ATGTGCTGCTGTAACCCTCGGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGC
839 ATGTGCTACTGTAACCCTCGGT-TGGT-CAATCTTAGACTGGGAATGAACTCCGTATGC
21892729 CTAAGCCAAC
Statistics
Matches: 3178, Mismatches: 342, Indels: 218
0.85 0.09 0.06
Matches are distributed among these distances:
893 72 0.02
894 125 0.04
895 108 0.03
896 25 0.01
897 259 0.08
898 200 0.06
899 19 0.01
900 108 0.03
901 356 0.11
902 127 0.04
903 215 0.07
904 382 0.12
905 194 0.06
906 177 0.06
908 2 0.00
910 2 0.00
913 2 0.00
915 1 0.00
916 1 0.00
917 1 0.00
918 1 0.00
922 1 0.00
923 1 0.00
925 3 0.00
926 33 0.01
927 513 0.16
928 249 0.08
929 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (910 bp):
TTAGATGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCTGATCCTG
CTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGCGGGGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTCATGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAAA
AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
TGCACACACCCCCCGGCCCCCCCGATCGCCGGAACCCAATGCCCCCGATCAGGTTCTCCGACGAT
GCTCCGTGATGGTGCCCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCT
ACTGTAACCCTCGGTTGGTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTATGACGTG
Found at i:21890941 original size:26 final size:26
Alignment explanation
Indices: 21890901--21890953 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
21890891 TTGGTCCAAT
*
21890901 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
21890927 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
21890953 C
1 C
21890954 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:21891834 original size:26 final size:26
Alignment explanation
Indices: 21891798--21891850 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
21891788 TTGGTTCAAT
*
21891798 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
21891824 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
21891850 C
1 C
21891851 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:21894866 original size:17 final size:16
Alignment explanation
Indices: 21894825--21894866 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
21894815 ATTTTTTACC
21894825 TTGTATTTTTTTTCTT
1 TTGTATTTTTTTTCTT
* *
21894841 TTTTCTTTTTTCTTCTT
1 TTGTATTTTTT-TTCTT
21894858 TTGTATTTT
1 TTGTATTTT
21894867 ATGTATTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.05, C:0.10, G:0.05, T:0.81
Consensus pattern (16 bp):
TTGTATTTTTTTTCTT
Found at i:21894887 original size:3 final size:3
Alignment explanation
Indices: 21894861--21894902 Score: 52
Period size: 3 Copynumber: 14.0 Consensus size: 3
21894851 TCTTCTTTTG
21894861 TAT T-T TAT GTAT T-T TAT TATT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT TAT
21894903 GTATATCTTT
Statistics
Matches: 35, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
2 4 0.11
3 25 0.71
4 6 0.17
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
TAT
Done.