Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 130 of 195
Found at i:22027277 original size:13 final size:12
Alignment explanation
Indices: 22027254--22027421 Score: 76
Period size: 12 Copynumber: 13.6 Consensus size: 12
22027244 GATTTTTATT
22027254 TAAAGAAAATAGAA
1 TAAA-AAAATA-AA
22027268 TAAAAAAATAAA
1 TAAAAAAATAAA
*
22027280 TAAAAATAAAAAA
1 TAAAAA-AATAAA
22027293 TAAAGAAAAGTAAA
1 TAAA-AAAA-TAAA
*
22027307 -ACAAAAATAAA
1 TAAAAAAATAAA
*
22027318 -AATAAAATAAA
1 TAAAAAAATAAA
* * *
22027329 GATAAAAA-GAA
1 TAAAAAAATAAA
**
22027340 T-ATTAAATAAA
1 TAAAAAAATAAA
***
22027351 CCTAATCTAATAAA
1 --TAAAAAAATAAA
22027365 TAAAATAAATAAA
1 TAAAA-AAATAAA
*
22027378 TAAACAAATAAA
1 TAAAAAAATAAA
* *
22027390 CAAAGAAATGAAAA
1 TAAAAAAAT--AAA
*
22027404 TAAAAAAAGAAA
1 TAAAAAAATAAA
22027416 -AAAAAA
1 TAAAAAA
22027422 CCTGGAGCGG
Statistics
Matches: 119, Mismatches: 24, Indels: 25
0.71 0.14 0.15
Matches are distributed among these distances:
10 3 0.03
11 23 0.19
12 37 0.31
13 30 0.25
14 26 0.22
ACGTcount: A:0.75, C:0.04, G:0.05, T:0.16
Consensus pattern (12 bp):
TAAAAAAATAAA
Found at i:22027288 original size:6 final size:6
Alignment explanation
Indices: 22027266--22027336 Score: 60
Period size: 6 Copynumber: 12.3 Consensus size: 6
22027256 AAGAAAATAG
* * * *
22027266 AATAAA AA-AATA AATAAA AATAAA AA-ATA AAGAAA AGT-AA AACAAA
1 AATAAA AATAA-A AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
*
22027312 AATAAA AAT-AA AATAAA GATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AA
22027337 GAATATTAAA
Statistics
Matches: 51, Mismatches: 9, Indels: 10
0.73 0.13 0.14
Matches are distributed among these distances:
5 14 0.27
6 35 0.69
7 2 0.04
ACGTcount: A:0.80, C:0.01, G:0.04, T:0.14
Consensus pattern (6 bp):
AATAAA
Found at i:22027290 original size:17 final size:17
Alignment explanation
Indices: 22027270--22027410 Score: 78
Period size: 17 Copynumber: 8.4 Consensus size: 17
22027260 AAATAGAATA
22027270 AAAAAATAAATAAAAAT
1 AAAAAATAAATAAAAAT
* *
22027287 AAAAAATAAAGAAAAGT
1 AAAAAATAAATAAAAAT
22027304 AAAACAA-AAATAAAAAT
1 AAAA-AATAAATAAAAAT
*
22027321 AAAATAA-AGATAAAAA-
1 AAAA-AATAAATAAAAAT
* * * **
22027337 GAATATTAAATAAACCT
1 AAAAAATAAATAAAAAT
**
22027354 AATCTAATAAAT-AAAAT
1 AA-AAAATAAATAAAAAT
*
22027371 AAATAAAT-AA-ACAAAT
1 AAA-AAATAAATAAAAAT
* *
22027387 AAACAAAGAAATGAAAAT
1 AAA-AAATAAATAAAAAT
22027405 AAAAAA
1 AAAAAA
22027411 AGAAAAAAAA
Statistics
Matches: 92, Mismatches: 24, Indels: 16
0.70 0.18 0.12
Matches are distributed among these distances:
15 1 0.01
16 20 0.22
17 55 0.60
18 16 0.17
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.17
Consensus pattern (17 bp):
AAAAAATAAATAAAAAT
Found at i:22027759 original size:20 final size:20
Alignment explanation
Indices: 22027730--22027772 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
22027720 TGAAGATTCA
* *
22027730 TCGAATTCTGGGTTTTGTCG
1 TCGAAATCTGGATTTTGTCG
*
22027750 TCGAAATCTGGATTTTTTCG
1 TCGAAATCTGGATTTTGTCG
22027770 TCG
1 TCG
22027773 GAAGTTCACC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.14, C:0.16, G:0.26, T:0.44
Consensus pattern (20 bp):
TCGAAATCTGGATTTTGTCG
Found at i:22028260 original size:18 final size:18
Alignment explanation
Indices: 22028233--22028290 Score: 66
Period size: 18 Copynumber: 3.2 Consensus size: 18
22028223 TCCAAAATCA
22028233 AATAAAAAAATAATAGAT
1 AATAAAAAAATAATAGAT
* *
22028251 AATTAAAAAA-GATAGGAT
1 AATAAAAAAATAATA-GAT
22028269 AAATAAAAAAATAATA-AT
1 -AATAAAAAAATAATAGAT
22028287 AATA
1 AATA
22028291 TCAAGTATAC
Statistics
Matches: 33, Mismatches: 4, Indels: 7
0.75 0.09 0.16
Matches are distributed among these distances:
17 7 0.21
18 14 0.42
19 9 0.27
20 3 0.09
ACGTcount: A:0.71, C:0.00, G:0.07, T:0.22
Consensus pattern (18 bp):
AATAAAAAAATAATAGAT
Found at i:22028420 original size:17 final size:20
Alignment explanation
Indices: 22028397--22028442 Score: 62
Period size: 17 Copynumber: 2.5 Consensus size: 20
22028387 AAAAAAAATA
*
22028397 ATAAATAAAT-TATAA-TAT
1 ATAAATAAATATAGAACTAT
22028415 AT-AATAAATATAGAACTAT
1 ATAAATAAATATAGAACTAT
22028434 ATAAATAAA
1 ATAAATAAA
22028443 ATACATATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
17 7 0.29
18 6 0.25
19 5 0.21
20 6 0.25
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (20 bp):
ATAAATAAATATAGAACTAT
Found at i:22028506 original size:21 final size:20
Alignment explanation
Indices: 22028393--22028507 Score: 71
Period size: 21 Copynumber: 5.5 Consensus size: 20
22028383 AAGAAAAAAA
22028393 AATAATAAATA-AATTATAAT
1 AATAATAAATATAA-TATAAT
22028413 ATATAATAAATATAGA-ACTATAT
1 A-ATAATAAATATA-ATA-TA-AT
* *
22028436 AAATAAAATACATATAA-ATATT
1 -AAT--AATAAATATAATATAAT
*
22028458 AACAATAAATA-AATA-AAT
1 AATAATAAATATAATATAAT
22028476 AAATAA-AAATATACATATAAT
1 -AATAATAAATATA-ATATAAT
22028497 AATAATAAATA
1 AATAATAAATA
22028508 ATAAAATACA
Statistics
Matches: 75, Mismatches: 6, Indels: 27
0.69 0.06 0.25
Matches are distributed among these distances:
18 9 0.12
19 13 0.17
20 9 0.12
21 21 0.28
22 4 0.05
23 7 0.09
24 3 0.04
25 9 0.12
ACGTcount: A:0.65, C:0.03, G:0.01, T:0.30
Consensus pattern (20 bp):
AATAATAAATATAATATAAT
Found at i:22028747 original size:1 final size:1
Alignment explanation
Indices: 22028743--22028797 Score: 56
Period size: 1 Copynumber: 55.0 Consensus size: 1
22028733 GTTTTTTGTG
* * * * * *
22028743 TTTTTTTTGTTTTTTTTTGTTTTTTTTTGTTTTTTTTGTTTTTTGTTCTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
22028798 ACCAAAGCTC
Statistics
Matches: 42, Mismatches: 12, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
1 42 1.00
ACGTcount: A:0.00, C:0.02, G:0.09, T:0.89
Consensus pattern (1 bp):
T
Found at i:22028747 original size:10 final size:9
Alignment explanation
Indices: 22028726--22028797 Score: 90
Period size: 9 Copynumber: 7.7 Consensus size: 9
22028716 AACATTGTCA
*
22028726 TTTTTGTGT
1 TTTTTTTGT
*
22028735 TTTTTGTGT
1 TTTTTTTGT
22028744 TTTTTTTGTT
1 TTTTTTTG-T
22028754 TTTTTTTGTT
1 TTTTTTTG-T
22028764 TTTTTTTGT
1 TTTTTTTGT
22028773 TTTTTTTGT
1 TTTTTTTGT
*
22028782 TTTTTGTTCT
1 TTTTT-TTGT
22028792 TTTTTT
1 TTTTTT
22028798 ACCAAAGCTC
Statistics
Matches: 59, Mismatches: 2, Indels: 4
0.91 0.03 0.06
Matches are distributed among these distances:
9 32 0.54
10 27 0.46
ACGTcount: A:0.00, C:0.01, G:0.12, T:0.86
Consensus pattern (9 bp):
TTTTTTTGT
Found at i:22028756 original size:19 final size:18
Alignment explanation
Indices: 22028726--22028797 Score: 90
Period size: 19 Copynumber: 3.8 Consensus size: 18
22028716 AACATTGTCA
* *
22028726 TTTTTGTGTTTTTTGTGT
1 TTTTTTTGTTTTTTTTGT
22028744 TTTTTTTGTTTTTTTTTGTT
1 TTTTTTTG-TTTTTTTTG-T
22028764 TTTTTTTGTTTTTTTTGT
1 TTTTTTTGTTTTTTTTGT
*
22028782 TTTTTGTTCTTTTTTT
1 TTTTT-TTGTTTTTTT
22028798 ACCAAAGCTC
Statistics
Matches: 48, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
18 13 0.27
19 26 0.54
20 9 0.19
ACGTcount: A:0.00, C:0.01, G:0.12, T:0.86
Consensus pattern (18 bp):
TTTTTTTGTTTTTTTTGT
Found at i:22028897 original size:41 final size:41
Alignment explanation
Indices: 22028804--22029016 Score: 279
Period size: 41 Copynumber: 5.1 Consensus size: 41
22028794 TTTTACCAAA
* * *
22028804 GCTCCTCTAAACAGAGGCTCAATGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-ATAAATT
* * * *
22028847 TCTCCTCTAAACAAAGGCACCATGACTTTTGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
22028888 GCTCCTCTAAACAGAGGAACCACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
*
22028929 GCTCCTCTAAACAGAGGAACCACGACTTTGGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
22028970 GCTCCTCTAAACAGAGGCA--ACGAAACTTT-GAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACG--ACTTTGGAAAA-TAAATT
22029011 GCTCCT
1 GCTCCT
22029017 TGACAATCAT
Statistics
Matches: 156, Mismatches: 11, Indels: 8
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.02
40 5 0.03
41 119 0.76
42 4 0.03
43 25 0.16
ACGTcount: A:0.38, C:0.22, G:0.15, T:0.24
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAATAAATT
Found at i:22030065 original size:8 final size:8
Alignment explanation
Indices: 22030045--22030138 Score: 129
Period size: 8 Copynumber: 11.6 Consensus size: 8
22030035 GCACCCTTTT
22030045 TTTTTTCA
1 TTTTTTCA
22030053 CTTTTTTCA
1 -TTTTTTCA
22030062 TTTTTTCA
1 TTTTTTCA
22030070 TTTTTTTCA
1 -TTTTTTCA
*
22030079 TTTTTTTA
1 TTTTTTCA
22030087 TTTTTTCCA
1 TTTTTT-CA
22030096 TTTTTTCA
1 TTTTTTCA
22030104 TTTTTTCA
1 TTTTTTCA
22030112 TTTTTTCA
1 TTTTTTCA
*
22030120 --CTTTCA
1 TTTTTTCA
22030126 TTTTTTCA
1 TTTTTTCA
22030134 TTTTT
1 TTTTT
22030139 CAAGCATAGC
Statistics
Matches: 77, Mismatches: 4, Indels: 9
0.86 0.04 0.10
Matches are distributed among these distances:
6 5 0.06
8 49 0.64
9 23 0.30
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (8 bp):
TTTTTTCA
Found at i:22030065 original size:17 final size:16
Alignment explanation
Indices: 22030045--22030138 Score: 129
Period size: 17 Copynumber: 5.8 Consensus size: 16
22030035 GCACCCTTTT
22030045 TTTTTTCACTTTTTTCA
1 TTTTTTCA-TTTTTTCA
22030062 TTTTTTCATTTTTTTCA
1 TTTTTTCA-TTTTTTCA
*
22030079 TTTTTTTATTTTTTCCA
1 TTTTTTCATTTTTT-CA
22030096 TTTTTTCATTTTTTCA
1 TTTTTTCATTTTTTCA
*
22030112 TTTTTTCA--CTTTCA
1 TTTTTTCATTTTTTCA
22030126 TTTTTTCATTTTT
1 TTTTTTCATTTTT
22030139 CAAGCATAGC
Statistics
Matches: 69, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
14 13 0.19
16 18 0.26
17 38 0.55
ACGTcount: A:0.12, C:0.14, G:0.00, T:0.74
Consensus pattern (16 bp):
TTTTTTCATTTTTTCA
Found at i:22037349 original size:15 final size:16
Alignment explanation
Indices: 22037329--22037360 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
22037319 TGTTAAGTGT
22037329 AATGAATGAG-AATGC
1 AATGAATGAGAAATGC
22037344 AATGAATGAGAAATGC
1 AATGAATGAGAAATGC
22037360 A
1 A
22037361 TGTATGCAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 10 0.62
16 6 0.38
ACGTcount: A:0.50, C:0.06, G:0.25, T:0.19
Consensus pattern (16 bp):
AATGAATGAGAAATGC
Found at i:22040623 original size:58 final size:57
Alignment explanation
Indices: 22040523--22040736 Score: 326
Period size: 57 Copynumber: 3.7 Consensus size: 57
22040513 TGTGTAGGGA
22040523 AAAATTGATACTTTCAACTTTTCC-CAAAAATTATTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-TATTTTTTGAAAATTTATTTTTAAGG
22040580 AAAATTGATACTTTCAACTTTTCCCTCAAAAATATTTTTTGAAAATTTA-TTTTAAGG
1 AAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTGAAAATTTATTTTTAAGG
* *
22040637 AAAATTGATACTTTTCAACTTTTCCTCAAAACCTTTTTTTTTGAAAATTTATTTTTTAAGG
1 AAAATTGATAC-TTTCAACTTTTCCTCAAAA--ATATTTTTTGAAAATTTA-TTTTTAAGG
22040698 AAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTT
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTT
22040737 TTGGAAATTT
Statistics
Matches: 145, Mismatches: 4, Indels: 15
0.88 0.02 0.09
Matches are distributed among these distances:
57 49 0.34
58 37 0.26
59 23 0.16
60 17 0.12
61 19 0.13
ACGTcount: A:0.35, C:0.13, G:0.06, T:0.46
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGAAAATTTATTTTTAAGG
Found at i:22040736 original size:118 final size:115
Alignment explanation
Indices: 22040523--22040746 Score: 362
Period size: 118 Copynumber: 1.9 Consensus size: 115
22040513 TGTGTAGGGA
22040523 AAAATTGATACTTTCAACTTTTCCCAAAAATTATTTTTTGAAAATTTATTTTTAAGGAAAATTGA
1 AAAATTGATACTTTCAACTTTTCCCAAAAATTATTTTTTGAAAATTTATTTTTAAGGAAAATTGA
22040588 TACTTTCAACTTTTCCCTCAAAAATA-TTTTTTGAAAATTTATTTTAAGG
66 TACTTTCAACTTTTCCCTCAAAAATATTTTTTTGAAAATTTATTTTAAGG
* *
22040637 AAAATTGATACTTTTCAACTTTTCCTCAAAACCTTTTTTTTTGAAAATTTATTTTTTAAGGAAAA
1 AAAATTGATAC-TTTCAACTTTTCC-CAAAA-ATTATTTTTTGAAAATTTA-TTTTTAAGGAAAA
*
22040702 TTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTTGGAAATTT
62 TTGATACTTTCAACTTTTCCCTCAAAAATA-TTTTTTTGAAAATTT
22040747 TGATTTTTAT
Statistics
Matches: 101, Mismatches: 3, Indels: 7
0.91 0.03 0.06
Matches are distributed among these distances:
114 11 0.11
115 13 0.13
116 5 0.05
117 24 0.24
118 35 0.35
119 13 0.13
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (115 bp):
AAAATTGATACTTTCAACTTTTCCCAAAAATTATTTTTTGAAAATTTATTTTTAAGGAAAATTGA
TACTTTCAACTTTTCCCTCAAAAATATTTTTTTGAAAATTTATTTTAAGG
Found at i:22040785 original size:9 final size:9
Alignment explanation
Indices: 22040758--22040840 Score: 57
Period size: 9 Copynumber: 9.3 Consensus size: 9
22040748 GATTTTTATT
*
22040758 TAAAGAAAA
1 TAAAAAAAA
* *
22040767 TAGAATAAA
1 TAAAAAAAA
22040776 TAAAAAAAA
1 TAAAAAAAA
22040785 T-AAAAAAA
1 TAAAAAAAA
22040793 T---AAAAA
1 TAAAAAAAA
*
22040799 TAAAGAAAAG
1 TAAA-AAAAA
22040809 TAAAAAAAAA
1 T-AAAAAAAA
*
22040819 TAAAGATAAA
1 TAAA-AAAAA
*
22040829 GAAAAAAAA
1 TAAAAAAAA
22040838 TAA
1 TAA
22040841 TTAAATAAAC
Statistics
Matches: 57, Mismatches: 11, Indels: 12
0.71 0.14 0.15
Matches are distributed among these distances:
6 6 0.11
8 8 0.14
9 23 0.40
10 17 0.30
11 3 0.05
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.13
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:22040819 original size:20 final size:20
Alignment explanation
Indices: 22040758--22040837 Score: 78
Period size: 20 Copynumber: 4.0 Consensus size: 20
22040748 GATTTTTATT
*
22040758 TAAAGAAAATAGAATAAATAAAA
1 TAAAGATAA-AGAA-AAA-AAAA
22040781 -AAA-ATAAA-AAAATAAAAA
1 TAAAGATAAAGAAAA-AAAAA
22040799 TAAAGA-AAAGTAAAAAAAAA
1 TAAAGATAAAG-AAAAAAAAA
22040819 TAAAGATAAAGAAAAAAAA
1 TAAAGATAAAGAAAAAAAA
22040838 TAATTAAATA
Statistics
Matches: 50, Mismatches: 1, Indels: 15
0.76 0.02 0.23
Matches are distributed among these distances:
18 6 0.12
19 9 0.18
20 21 0.42
21 11 0.22
22 3 0.06
ACGTcount: A:0.80, C:0.00, G:0.07, T:0.12
Consensus pattern (20 bp):
TAAAGATAAAGAAAAAAAAA
Found at i:22041822 original size:55 final size:55
Alignment explanation
Indices: 22041762--22041886 Score: 132
Period size: 55 Copynumber: 2.3 Consensus size: 55
22041752 GATAAATAAA
* *
22041762 AAAAAAATAATAATATCAGAT-ATACAA-AAAATCAAATAAACGAAAAAGA-GAGAAG
1 AAAAAAATAATAATAACAGATAATACAATAAAAT-AAATAAA--AAAAAGATGACAAG
* * * * *
22041817 AAAAAAA-ATTATTAACAGATAATACAATAAGATAAATAAAAAAAATATTACAAG
1 AAAAAAATAATAATAACAGATAATACAATAAAATAAATAAAAAAAAGATGACAAG
22041871 AAAAAAATAATAATAA
1 AAAAAAATAATAATAA
22041887 TAAATAAATA
Statistics
Matches: 57, Mismatches: 9, Indels: 8
0.77 0.12 0.11
Matches are distributed among these distances:
53 6 0.11
54 21 0.37
55 26 0.46
56 4 0.07
ACGTcount: A:0.69, C:0.06, G:0.07, T:0.18
Consensus pattern (55 bp):
AAAAAAATAATAATAACAGATAATACAATAAAATAAATAAAAAAAAGATGACAAG
Found at i:22041904 original size:21 final size:21
Alignment explanation
Indices: 22041879--22042015 Score: 72
Period size: 21 Copynumber: 6.4 Consensus size: 21
22041869 AGAAAAAAAT
22041879 AATAATAATAAATAAATAATA
1 AATAATAATAAATAAATAATA
* *
22041900 AATAA-ATTATAATATATAATA
1 AATAATAATA-AATAAATAATA
* *
22041921 AATATAGAACTATATAAAT-A-A
1 AATA-ATAA-TAAATAAATAATA
* *
22041942 AATACAT-ATAAATATTAACAAAAA
1 AATA-ATAATAAATA--AA-TAATA
*
22041966 AAGTAAAAATAAATAAATAA-A
1 AA-TAATAATAAATAAATAATA
22041987 AAT-ATACATATAAT-AATAATA
1 AATAATA-ATA-AATAAATAATA
22042008 AATAATAA
1 AATAATAA
22042016 AATACATAAA
Statistics
Matches: 89, Mismatches: 12, Indels: 30
0.68 0.09 0.23
Matches are distributed among these distances:
19 7 0.08
20 13 0.15
21 38 0.43
22 7 0.08
23 9 0.10
24 6 0.07
25 9 0.10
ACGTcount: A:0.67, C:0.03, G:0.01, T:0.28
Consensus pattern (21 bp):
AATAATAATAAATAAATAATA
Found at i:22042012 original size:27 final size:27
Alignment explanation
Indices: 22041977--22042028 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
22041967 AGTAAAAATA
*
22041977 AATAAATAA-AAATATACATATAATAAT
1 AATAAATAATAAA-ATACATAAAATAAT
22042004 AATAAATAATAAAATACATAAAATA
1 AATAAATAATAAAATACATAAAATA
22042029 CAAAAGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (27 bp):
AATAAATAATAAAATACATAAAATAAT
Found at i:22042299 original size:25 final size:26
Alignment explanation
Indices: 22042271--22042319 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
22042261 CCGGTCCGAT
*
22042271 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
22042296 CTTAGACTGGGAATGAACTACGTA
1 CTTAGACTGGGAATGAACTACGTA
22042320 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 8 0.36
26 14 0.64
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:22043198 original size:24 final size:25
Alignment explanation
Indices: 22043164--22043214 Score: 86
Period size: 24 Copynumber: 2.1 Consensus size: 25
22043154 GTCCGGTCTG
22043164 ATCTTAGACTGGGAATGAACTCCGT
1 ATCTTAGACTGGGAATGAACTCCGT
*
22043189 ATCTT-GACTGGGAATGAACTCTGT
1 ATCTTAGACTGGGAATGAACTCCGT
22043213 AT
1 AT
22043215 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
24 20 0.80
25 5 0.20
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (25 bp):
ATCTTAGACTGGGAATGAACTCCGT
Found at i:22044977 original size:26 final size:26
Alignment explanation
Indices: 22044941--22044993 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22044931 CTGGTCTGAT
22044941 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
* *
22044967 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
22044993 C
1 C
22044994 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:22045879 original size:25 final size:26
Alignment explanation
Indices: 22045845--22045894 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
22045835 CTGGTCTGAT
22045845 CTTAGACTGGGAATGAACT-CGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
*
22045870 CTTAGACTGGGAATTAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
22045895 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 18 0.78
26 5 0.22
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:22046780 original size:26 final size:26
Alignment explanation
Indices: 22046751--22046803 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22046741 CTGGTCCGAT
22046751 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22046777 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22046803 C
1 C
22046804 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22047674 original size:26 final size:26
Alignment explanation
Indices: 22047638--22047693 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
22047628 CTGATTAGAT
22047638 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
22047664 CTTAGACTGGGAATTAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22047690 CTTA
1 CTTA
22047694 AGCCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22048558 original size:26 final size:26
Alignment explanation
Indices: 22048528--22048578 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
22048518 GATTTTAGAT
*
22048528 TGGGAATGAACTCCATATGCTTAGGC
1 TGGGAATGAACTCCATATGCCTAGGC
*
22048554 TGGGAATGAACTCCGTATGCCTAGG
1 TGGGAATGAACTCCATATGCCTAGG
22048579 TTAACCCATG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
TGGGAATGAACTCCATATGCCTAGGC
Found at i:22049179 original size:887 final size:887
Alignment explanation
Indices: 22042189--22054613 Score: 14966
Period size: 887 Copynumber: 14.0 Consensus size: 887
22042179 GCTCCGGTGA
* * * * * * * * *
22042189 TGGTGCCCCGATGAAAAAAAATGCGACACCAACACATGCCCGAGCCAAGCTTGTGCTACCGCAAC
1 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAAC
* *
22042254 CCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTACG
66 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * **
22042318 TACGCCTAAGTCAAACCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGATGGGATGCGC
131 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* * * * * * ** *
22042383 AAGCCGAGGATCGGTCGGGTCCCCCTCTACGTGCTGCCAATCCTGCTACCACAACCCTATGTCCG
196 AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
* * * * *
22042448 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCTAACGGACGAAACGAGCGGGCGGGC
261 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A-------AGC
* * *
22042513 GGGCGGGTGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGAT
318 GGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
22042578 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
379 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
22042643 TCATACAATGGTCCCTTAAGCCTTCACGTGCAA-TTTCATGGCAAGACGACTCATTTTCTATTTT
444 TCATACAATGGTCCCTTAAGCCTTCACGTG-AAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
22042707 TCATGA-TTTTCAAACTTTTTACGGTTCGGGACTTTTTAAAATTTTTTC-AGAAGGAGTTTTGGC
508 TCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGC
* * *
22042770 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGTTAAAAAC
572 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* ** *
22042835 TTGCTGTGTACAAGATTTTCTGA-CATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCT
637 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
22042898 ACT-GCAGCAAAACTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
702 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
22042962 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCGCACAACATGTGCG--CACCCC
767 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * ** * * * * *
22043025 CCGACCCCTCTAATCGTTGGAACCCTAATGCTGTCGATCAGGTTCTCCGATGATGCTTCAGC
832 CCGGCCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCG--G-CG-AT--GC
** * * * *
22043087 GATGGTGCCCCGGTGAAGAAAAATGCGACA-CAGCACATG-CCGAG-CCAGCATGTACTG-TCGT
1 --TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GC
22043148 AA-CCTC-GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT-CTT-GACTGGGAATGAACT
63 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
22043209 CTGTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGTTTAGCCGGTCAGAGGGGCGGGATG
128 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
** * * ** * * *
22043274 CATAAGTCGGGGATCGAATCGGGTCCCCCTTTATGTGCTGTCGTTCCTGCTGCCACAA-CCTCGG
193 CGCAAGCCGGGGATCG-ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGG
* * ** *
22043338 TCTGGTCTGATCTTAGACTAGGAATGAACTCCCGTATGCCTAAGCCAACCGACAAAATGAGCTGG
257 TCTGGTCTGATCTTAGACTGGGAATGAACT-CCGTATGCCTAAGCCAACCGACGAAACAAGCGGG
* * *
22043403 CGGGCAGCGGGCACTACGTCAGCCAGAGATG-CGGGATGCGCAAGCTGTGGATCGATAGGGTGGT
321 C-GG--GCGGGCACTACGCCGGCCAGAGA-GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
22043467 AGGTGGGTTTAGGGAAAATCTTCATATTTTTGCCATGCCAATGCCATTTTTCTGGCTTGTAAATT
382 AGGTGGGTTTA-GGCACATCTTCATATTTCTG-CATGCCAATGCCATTTTTATGGCTTGTAAATT
*
22043532 CAATACAATGGT-CCTTAAGCCTTCATGTGAAGTTTCAT-GCAAGACGACTCGTTTTCTATTTTT
445 C-ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTT
* * ** * * * * *
22043595 TTACGATTTTCAAAACCTTTTTTAGGGTTCCGGAATTTTTAAAAATTTTTTCAAAAAGAGTTTTG
508 TCATGATTTTTGAAA-C-TTTTTACGGTT-CGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
* * * * *
22043660 G-CCCAAACTTGGTAGACATGATCCTTGTAATTTTGTTGGCATGTACAAAAACATTCAGCTAAAA
570 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
22043724 ACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTG
635 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
22043789 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
700 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
22043854 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--
765 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
22043917 CCCC-GACCCCCCGATCGTCGGAA-CCCAATG-TCGCCAGTCAGGTTCTCCTGTGAT--
830 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCT-GTCGGTCAGGTTCTCCGGCGATGC
* *
22043971 T-GTGTCCCGACGAAGAAAAATACGGCACCAGCACATG-CCGAGCCCAGCATGTGCTGC-ACAAC
1 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAAC
**
22044033 CCTC-GT-C-GTC-GA--TT--ACTGGG-ATG-AC-CCGTATGCTTAGACTGGGAATGAACTCTA
66 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * *
22044087 TATGCCTAAATCAACCCACAAAACGAGCGTGTGGGTGCTCAACCGGCCAG-GGGAGCGGGATGCG
131 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG-GCGGGATGCG
* ** * * * * * *
22044151 TAAGCCGGGGATCGGCCAGGTCCCTCTCTGCGTCCTGTCGATCTTGCTGCCACAACCCTCGGTCT
195 CAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT
*
22044216 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA-AGAGCGGGCGG
260 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACA-A----GCGG
* * * * * *
22044280 GCGGGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGATACGCAAACCGTGAATCAATAGGATGG
320 GCGGGC--G--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
22044345 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
381 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
22044410 ATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
446 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * *
22044475 TGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTCAAATTTTTTCGGAAGGAGTTTTGGCCCCA
511 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
* * * *
22044540 AACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAATTCAGATAAAAAGAT-G
576 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA-CTCG
* * * *
22044604 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTTAGACACTTTAGTGGCTACC
640 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
22044669 AGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTACTCGAGGTTTGATGAGG
705 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * * *
22044734 GATAGGGGGCCAATATAAGGGCCAAGTACCAGTACACATGGCAAATCATGTGCGCATACCCCCC-
770 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * *
22044798 GACCCCCAGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGACGATGCTC
835 GCCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATG--C
* * * * *
22044853 TAGTGATGGTACCCCGACGTAGAAAAATTCAGCACCAGCACATGCTCGATCCCAGCATGTGCTGC
1 T-G-G-T-G--CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
*** * *
22044918 CATAACCCTCGGTCTGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
60 TGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * *
22044983 ACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAAGGGTAGA
125 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC-AGA-GG--G-
* * ** * * ** *
22045048 TGCACAAGTTGGGGATGCGCAAGTCGGGGATTGGCCAGGTCCCCCTTTGTATGCTGCCAATCCTG
185 -G--C------GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * *
22045113 CTGTCGCAACCCTCGGT-TCGGTCCGATCTTAGACTGGGAGTGAACTCCGTATGCCTAAGCCAAC
241 CTGCCGCAACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
22045177 CGACGAAACGAGCGAGCGGACGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATACGCAAG
305 CGACGAAAC-A---A---G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
22045242 CCGTGGATCTATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCATGCCAATGCCAT
362 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
22045307 TTGTA-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
427 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
22045371 ACTCGTTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTC-GGATTTTTTTAAAATTTTT
492 ACTCG-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTT
* * **
22045435 TC-AGAAGGAGTTTTGGCCCCAAACTTGGTGGATGTGATCCTTGTATTTTTTTTGGCATGTGCAA
555 TCGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* *
22045499 AATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATT
619 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
22045564 TCAGACACTTTAACGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATG
684 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
22045629 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
749 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** ** *
22045694 ATCATGTGCGCACACCCCCCGG-CCCCCCGATCACCGGAACCCCAACACCG-CTGGTCAGGTTCT
814 ATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGTC-GGTCAGGTTCT
*
22045757 ----CGATGA
878 CCGGCGATGC
* *
22045763 TGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG-TCGTAA
1 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAA
* * * *
22045827 CCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACT-CGTATCCTTAGACTGGGAATTAACTCC
65 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
22045891 GTATGCCTAAGTCAACCCACGAAATGA-CGTGCGGGCGCTCAGCCGGTCAGAGGGGCGGGATGCG
130 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * *
22045955 -ATAGCCGGGGATC-AGTCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCTGCAACCATCGGT
195 CA-AGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT
* * *
22046018 CTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAACGGACA
258 CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AA--G-CG
*
22046083 GGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGT-GATCGATAAGGGTGGTA
319 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT-AGGGTGGTA
*
22046147 GGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTAGTGGCTTGTAAATTC
383 GGTGGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTA-TGGCTTGTAAATTC
* * *
22046212 ATACAATAGTCCCTTAAGCCTTCATGTGAAGTTTCATAGGCAAGATGACTCGGTTTTCTATTTTT
446 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-GGCAAGACGACTC-GTTTTCTATTTTT
* * *
22046277 CATGATTTTTTGAAACTTTTTACGGTTCGAGATTTTTTTCTAAATTTTTTTCAAAAGGAGTTTTG
509 CATGA-TTTTTGAAACTTTTTACGGTTCGGGA--TTTTT-TAAAATTTTTTCGAAAGGAGTTTTG
*
22046342 GCCCCAAACTTGGTAGACATGATCCTTGTA-TTTTTTTGGCATGCA-AAAAAAATTCAGCTAAAA
570 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
22046405 ACTC-AAATGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGG
635 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
22046469 CTACTTGGCAGCAAA-CTG-CAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTT
700 CTAC-TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTT
* * *
22046532 GATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAACACATCAAGTGCGCAC
763 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGCAC
* * * *
22046597 ACCGACCCCCGGCCCCTCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCT
827 A-C--CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCG--G-CGAT
22046662 CCAGC
886 ---GC
* * * *
22046667 GATGGTGCCCCGACAAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTA
1 --TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCA
* * * *
22046732 ACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTT
64 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * *
22046797 CGTATGCCTAAGTCAACCCACGAAACGAGCGCGCGGGCGCGCAACCGGCTAAAGGGGCGGGATGC
129 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * *
22046862 G-ATAGCCGGGGATCGACCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCATCGGT
194 GCA-AGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT
* * **
22046926 CTGGTC-CATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCGACGAAATGAGCGGAA
258 CTGGTCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC----
* * * *
22046990 GGGTGGGCGGGCACTATGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
318 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
22047055 GGTGGGTTGAGGCACATCTTCATATTTCT-CTGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
383 GGTGGGTTTAGGCACATCTTCATATTTCTGC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
22047119 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCAT
447 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * ** * *
22047184 GATTTTCGAAACTTTTTTGCTGTTCAAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGG-CCAA
512 GATTTTTGAAAC-TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
* * *
22047247 AACTT-GTAGACGTGATCCTTGTATTTTTTTTGGCGTGCACAAAACAATTCAGCTAAAAAATCGA
576 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
** *
22047311 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTGCATTTCAGTCACTTTAATGGCTACTG
641 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
22047376 GTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGG
706 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
22047441 ATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCAATCGCACATCATGGGCGCACACCCCCCCG
771 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG
** * * * *
22047506 TTCCCCCCGATCATCGAAACCCCAATGCTGCCGATCAGGTTCTCCGGCGA---
835 GCCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGC
* * * * *
22047556 TAGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCTAGCATGTGCTACCGCAAC
1 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAAC
* * * *
22047621 CCTCGGTCTGAT-TAGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATTAACTTC
66 CCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * ** *
22047685 GTATGCTTAAGCCAACCCATGCAACGAGCATGCGGGCGCTCAGCCGGTTAGAGGGGCGGCATGCG
130 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * * * *
22047750 TAACCCGAGGATCG-GCTGGGTCCCCCTCTACATGCT----A-CC-G-T-----AACCCTTGATC
195 CAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
* * * * **
22047802 TGGTCCGATCTTAGACTAGGAATGAACTCCGTTTGCCTAAGCCAACTGACGAAATGAGCGGGCGG
259 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CAAGC-G
* * * * *
22047867 ACAGGCGGGCGGGCATTACTCCAGCTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGG
319 ---GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
22047932 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTC
381 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
22047997 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTAAC
446 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT-TC
** * * *
22048062 A--ATTTTTGAAACTTTTTACGGTTCGAAATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCA
510 ATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCC
* * * * * *
22048125 AAACTTGGTAGCCGTGATCCTTGTATTTTTGTTGACATGCACAGAACAATTCAGCTAAAAACTTG
575 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
22048190 AAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
640 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
22048255 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGG
705 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
22048320 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTC
770 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-C
**
22048385 GGCCCCCCCGATCGTCGGATGCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGC
834 GGCCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGC
* *****
22048439 TGGTGCCCCGGCGAAGAAAAATAAAATGCCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAAC
1 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAAC
* * * * * *
22048504 CCTCAGTCCGATCTGATTTTAGATTGGGAATGAACTCCATATGCTTAGGCTGGGAATGAACTCCG
66 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * * *
22048569 TATGCCTAGGTTAACCCATGAAA-GAAGCCTGTGGGCGCTCAGCCGG-CAGAGGGGTGAGATGCA
131 TATGCCTAAGTCAACCCACGAAACG-AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * * *
22048632 CAAGCCGGGAATCGATCGGGTCCCCCTTTGTGTGCTGGCGATCCTGTTGCCACAACCCTCAGTCC
195 CAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT-C
* * *
22048697 T-GTCTGATCTTAGACTGGGAATGAACTCTGTATGCGTAAGCCAACCGACGAAACAAGCGGGTGG
259 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGG
* *
22048761 GCGGGCACTACGCCGGCTAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGG
324 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
22048826 TTTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
389 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
22048891 GTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
454 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* *
22048956 AAAACTTGTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
519 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
22049021 AGACGTGATCCTTATATTTTTTTTGGCATGCGCAAAAAAAGTCAGCTAGAAACTCGAAGTGTACA
584 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* ** *
22049086 AGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTCAGACACTTTAAAAGCTACTGACAGCAAA
649 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
22049151 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTGCTTGAGCTTTGATGAGAGATAGGAGG
714 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * * * **
22049216 -CAATATAAGGGCCAAATACCAGCACCCATTGCACGTTATGCGTGCACACCCCCCCGGCGTCCCC
779 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCC
* * * *** *
22049280 GATCATCGAAAACCCAATGCCACCGGTCAGGTTCTCCAGCGA---
843 GATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGC
* * * * *
22049322 TGGTGCCCCCACGAAGAAAAATACGGCACCAGCACATCCCCGAGCCTAGCATGTTCT-ATCGCAA
1 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAA
* * * * *
22049386 CCCTTGGTCGGGTCCGATCTTAGACTGGGATTGAACTGCGTATGCTTAGACTGGGAATGAACTCC
65 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * * * * * *
22049451 ATATGCCTAACTCAACCCACGAAACGTGCGTACAGGCGCTTAGCCGGCCAGAGGGGCGAGATGCA
130 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * *
22049516 CAAGCCGAGGATCGATCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTGCTGCAACCCTCTGTCT
195 CAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT
* * *
22049581 GGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGTGGG
260 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGG
* * * *
22049646 CGGCCACTCCGCCGACCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTA-G-GGGT
325 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
22049709 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
390 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
22049774 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAACATGACTCGTTTTCTATTTTTCACGATTTTTG
455 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * *
22049839 AAACTATTTACGATTCGTGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
520 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
22049904 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTATAA
585 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
22049969 GATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC-AAC
650 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
22050033 CTATAAAATCTCAAATGCTCTTTAATGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGC
715 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
22050098 CAATATAAGGGCCAAGTACTAGCACCCATCACCCATCATGTGCGCACA-----C--ACCCCCCGA
780 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * *
22050156 -------AACCCCAATGCCGTCGGTCAGCTTCTCCGGTGATGCTC
845 TCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATG--C
* * * *
22050194 TGACGATGGTGCCCTAGCGAAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGTTG
1 TG--G-T-G-CCCCGA-CG-AAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
22050259 CCGCAACCCTCGGTCTGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
59 CTGCAACCCTCGGTCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * *
22050323 GAACTCCATATGCCTAAGTCAACCTACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
123 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * ** * * * * * *
22050388 GGATGCGCAAGCTGAGGATCGGCCCGGTCCCCCTCTGCATGTTGCCAATCCTACTACCGCAACCC
188 GGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCC
* * * *
22050453 TTGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACAGATGAAATGAGC
253 TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C
** * * *
22050518 GGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGTGCAAGACGTGGATCGATAGGGT
314 AAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * * *
22050583 GCTAGGTTGGTTTAGGCACATCTTCATATTTCTGCCTGCCAATGTCATTTTTATGGCTTGTAAAT
379 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
22050648 TCATACAATGGTCCTTTACGCCTTCACGTGAAGTTCCATGGCAAGATGACTCGTTTTCTATTTTT
444 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * *
22050713 CATGATTTTTGAAACTTTTT-GGGTTCGGGATTTTTTAAAGTTTTTTCGAAAGGAGTTTTGGTCC
509 CATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
* * *
22050777 CAAACTTGGTAGACGTGATCCTTTTA-TTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTC
574 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
22050841 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTAC
639 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
22050906 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
704 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
22050971 GGATAGAGGGCCAATATAAGGGCTAAGTACCAGCACCCAACGCACATCATGTGCGCACACCCCCC
769 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * *
22051036 GGCCCCCCCGATCGTTGGAA-CCCAATGCCGTCGGTGAGGTTCTCCGGCGATGC
834 GGCCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGC
* * *
22051089 TACGACGATGGTTCCCCGACGAAGAAAAATGCGGCACCAACACATGGCCGAGCCCAGCATGTGCT
1 T--G--G-T-G--CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* *
22051154 G-TCACAACCCTCGGTACGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
58 GCT-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * ** * * *
22051218 TGAATTCCGTATGCCTAAGTCAACCCGCGAAACAAACGTGTAGGCCCTCAGCTGACCAGAGGGGC
122 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
** * * * * * * *
22051283 AAGAAGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCAATTCTACTACCGCAACC
187 GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACC
* ** * * *
22051348 CTCGGTCCGGTCCAATCTTAGACTAGGAATGAACTCCATATGCCTAAGCTAACCGAC--AA-AA-
252 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAG
* * * * *
22051409 CGAGCGGGCGGGCGCTACGCCTGCCAGATAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGT
317 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
22051474 AGGTGGGTTTAGGAACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
382 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * *
22051539 TACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACAACTCATTTTCTCTTTTTCAC
447 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * *
22051604 GATTTTTAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTAGCCCCA
512 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCA
* * *
22051668 AACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAGAAACTCGA
576 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
22051733 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTG
641 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
22051798 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
706 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
22051863 ATAGAGGGCCAATATAAGGGCTAAGTACCAGCACCCAACGCACATCATGTGCGCACACCCCCCGG
771 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * *
22051928 CCCCCCCGATCGTTGGAACCCCAATGCCGTCGGTGAGGTTCTCCGGCGATGC
836 CCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGC
* * *
22051980 TACGACGATGGTTCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCTAGCCCAGCATGTGCT
1 T--G--G-T-G--CCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
* * *
22052045 G-TCGCAACCCTCGGTACGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAA
58 GCT-GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* ** * *
22052109 TGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGTAGGCCCTCAGCCGACCAGAGGGGC
122 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
** * * * * * *
22052174 AAGAAGCGCAAGTCGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCAATTCTGCTACCGCAACC
187 GGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACC
* ** * * *
22052239 CTCGGTCCGGTCCAATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCTAACCGAC--AA-AA-
252 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAG
* * * * *
22052300 CGAGCGGGCGGGCGCTATGCCTGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGT
317 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
22052365 AGGTGGGTTTAGGAAAATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
382 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * *
22052430 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCATTTTCTCTTTTTCAC
447 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * * *
22052495 GATTTTTAAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTC-AGAAGGAGTTTTAGCCCCA
512 GATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCA
* * *
22052559 AACTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAGAAACTCGA
576 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
22052624 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTG
641 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
22052689 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCAAGGTTTGATGAGG
706 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
22052754 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCA
770 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * *
22052819 GCCCCCTCGATCGTTGGAGCCCCAATGTTGCCGGTCAGGTTCTCCGGCGA---
835 GCCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGC
** * * * * *
22052869 TGGTGCCCCGACGAAGAAAAATGTGACACCTAGCACAT-CCTGAGCCCAGTATGTGCTACCGCAA
1 TGGTGCCCCGACGAAGAAAAATACGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTGCTGCAA
*
22052933 -CC-C--T-C-G---G-TC-----C---G-AT---CT--G-AT-CTTAGACTGGGAATGAACTCT
65 CCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * *
22052972 GTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGCGGCGGGATGCG
130 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * * ** * * * * *
22053037 CAAGTCAGGGTTCGGTCGGGTCCCCCTCTTCGTGCTGTTGATCCTACTACTGCAACCCTCAGTCC
195 CAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCT
* * ** * * * * * *
22053102 GGTCCGATCTTAGGCAAGGAAGGAACTCTGTATACCTAAGCCAACTGATGAAACGAGCGGGCGGG
260 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGG
** * *
22053167 CGAGCTTGCACTTTGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
325 CG-G---GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * * *
22053232 AGGTTTAGGCACATCATCATATATCTACGTGCCAATGCCATTTTT-TAGGCTTGTAAATGCATAC
386 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT-GGCTTGTAAATTCATAC
*
22053296 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACGCGTTTTCTATTTTTCATGAT
450 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * *
22053361 TTTTGAAACTTTTTACGATTCAGGATTTTTTAAAATTTTTTTGGAAA-GAGTTTTGGCCCCAAAC
515 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAAC
* * *
22053425 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCACGCATAAAAAAATTCAGCTAAAAACTCGAAGT
579 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
22053490 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCA
644 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
22053555 -CAAACCTGTGAAATCTCAACTGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
709 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
22053619 GGAGGCCAATATAAGGGCCAAGTACCAGGACCCATCGCACATCATGTGCGCACACCCCCTCGGCC
774 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCC
* * * * *
22053684 CCCCCGATCGTC-GAAGCCCCAATGCCGCCAGTCAGGTTCTTCGACGATGCTTCCGGC
838 CCCCCGATCGTCGGAA-CCCCAATGCTGTCGGTCAGGTTCTCCGGCGA----T---GC
* * * *
22053741 GATGGTGTCCCGACGAAGAAAAATTCAGCACCAG--CA----C--G---TGC-TGT-C-G-T--A
1 --TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCA
* * *
22053789 ACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
64 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * * * *
22053854 CATATGCTTGAGTCAACCCACGAAACGAGCGTGCAGGCACTCAGCAGGCCAGAGGTGCGGGATGC
129 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * * * * * **
22053919 GCAAGTCGGGGATCGGTCGGGTCCCCCTTTGCGTGCTACCGATCCTACTACCACAACCCTCCATC
194 GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
* * * *
22053984 TGGTCTGATCTTAGACTGGCAATGAACTCCGTATACCTAAGCCAACCGACTAAACGAGCGGACGG
259 TGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC-G--GG
* * * * *
22054049 ACGGGCGGTCGAGCTCTACGTCGACTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGG
321 -CGGGC-G--G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
22054114 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
381 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
22054179 ATGCATTGGTCCCTTAAGCCTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
446 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * *
22054244 CGATTTTTGAAACTTTTTGCGGTTAGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCA
511 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCA
* *
22054309 AACTTGGTAGACATGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGA
576 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
22054374 AGTGTACAAGATTTTGTAACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTCATGGCTACTG
641 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
22054439 GCAGCAAACCTATAAAAGCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGG
706 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
22054503 ATAGGGGGCCAATATAAGGGCCAAGTTCCACCACCCATCGCACATCATGTGTGCACACCCCCCTC
771 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-C
* ** *
22054568 GG-CCCCCCGATCGTCGAAACCTGACTG-TCGTCGGTCAGGTTCTCCG
834 GGCCCCCCCGATCGTCGGAACCCCAATGCT-GTCGGTCAGGTTCTCCG
22054614 TATATCTAAG
Statistics
Matches: 10132, Mismatches: 1088, Indels: 623
0.86 0.09 0.05
Matches are distributed among these distances:
855 166 0.02
856 2 0.00
857 4 0.00
858 3 0.00
859 12 0.00
860 1 0.00
861 94 0.01
862 75 0.01
863 339 0.03
864 8 0.00
865 1 0.00
866 3 0.00
867 29 0.00
871 4 0.00
872 4 0.00
873 8 0.00
874 125 0.01
875 415 0.04
876 27 0.00
877 129 0.01
878 93 0.01
879 508 0.05
880 283 0.03
881 127 0.01
882 405 0.04
883 663 0.07
884 441 0.04
885 155 0.02
886 342 0.03
887 994 0.10
888 447 0.04
889 265 0.03
890 321 0.03
891 887 0.09
892 250 0.02
893 51 0.01
894 317 0.03
895 87 0.01
896 271 0.03
897 54 0.01
898 74 0.01
899 36 0.00
900 89 0.01
901 143 0.01
902 114 0.01
903 60 0.01
904 118 0.01
905 14 0.00
906 146 0.01
907 71 0.01
908 219 0.02
909 9 0.00
910 2 0.00
912 5 0.00
915 68 0.01
916 538 0.05
917 1 0.00
918 2 0.00
919 2 0.00
920 11 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAAC
CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
AAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
CGTCGGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGC
Found at i:22049455 original size:26 final size:26
Alignment explanation
Indices: 22049404--22049456 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22049394 CGGGTCCGAT
* * *
22049404 CTTAGACTGGGATTGAACTGCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22049430 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
22049456 C
1 C
22049457 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22050319 original size:26 final size:26
Alignment explanation
Indices: 22050283--22050335 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22050273 CTGGTTCGAT
*
22050283 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22050309 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
22050335 C
1 C
22050336 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22051215 original size:26 final size:26
Alignment explanation
Indices: 22051179--22051231 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22051169 ACGGTCTGAT
22051179 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22051205 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22051231 C
1 C
22051232 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22052106 original size:26 final size:26
Alignment explanation
Indices: 22052070--22052122 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22052060 ACGGTCCGAT
22052070 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22052096 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22052122 C
1 C
22052123 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22053846 original size:26 final size:26
Alignment explanation
Indices: 22053808--22053862 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
22053798 CCGGTCCGAT
**
22053808 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
22053834 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
22053860 CTT
1 CTT
22053863 GAGTCAACCC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:22055338 original size:26 final size:26
Alignment explanation
Indices: 22055309--22055361 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22055299 CCAGTCCGAT
22055309 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22055335 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22055361 C
1 C
22055362 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22057119 original size:26 final size:26
Alignment explanation
Indices: 22057081--22057135 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
22057071 CTGGTCTGAT
*
22057081 CTTAGACTAGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
22057107 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
22057133 CTT
1 CTT
22057136 GAGTCAACCC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.15, G:0.24, T:0.35
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:22057910 original size:14 final size:14
Alignment explanation
Indices: 22057888--22057917 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
22057878 CAGGTTCTCC
22057888 GATGATGCTCCGGT
1 GATGATGCTCCGGT
*
22057902 GATGGTGCTCCGGT
1 GATGATGCTCCGGT
22057916 GA
1 GA
22057918 AGAAAAATGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.13, C:0.20, G:0.40, T:0.27
Consensus pattern (14 bp):
GATGATGCTCCGGT
Found at i:22058037 original size:26 final size:26
Alignment explanation
Indices: 22057986--22058038 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22057976 CCAGTTCGAT
*
22057986 CTTAGACAGGGAATGAACTCTATATG
1 CTTAGACAGGGAATGAACTCCATATG
* *
22058012 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCATATG
22058038 C
1 C
22058039 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCATATG
Found at i:22058920 original size:26 final size:26
Alignment explanation
Indices: 22058891--22058943 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22058881 CTAGTCCGAT
*
22058891 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22058917 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22058943 C
1 C
22058944 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22059804 original size:26 final size:26
Alignment explanation
Indices: 22059775--22059827 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22059765 CTAGTCCGAT
*
22059775 CTTAGACTTGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22059801 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22059827 C
1 C
22059828 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22061185 original size:901 final size:897
Alignment explanation
Indices: 22056211--22061670 Score: 7215
Period size: 905 Copynumber: 6.1 Consensus size: 897
22056201 CCGATCCGAT
* * *
22056211 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAGGGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * **
22056276 CGACCAGAGGGGCGGGATGTGCAAGTCGAGAATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTG-CGATCC
* * * * * **
22056341 AGCTGCCGTAGA-CCTC-AGTTCTGTCTGATCTTAGACTATGAATGAACTCCGTATGCCTAAGCC
130 TGCTGCCATA-ACCCTCGA-TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
22056404 AACCGACGAAACGAACGGGTGGGCGGGTGGGCACCACGTCGGCCAGAGAGACGGGATGCGCAAGC
193 AACCGACGAAACGAGCGGGCGGGCGGG-CGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
*
22056469 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
257 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCTGTGCCAATGCCATT
22056534 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
22056599 CTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCG
387 CTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * * * * * * *
22056664 GAAGGATTTTTAGCACGAAACATGGCAGGCGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAA
452 GAGGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAA
*
22056729 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCC-ATTTCAG
516 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAG
* * * *
22056793 ACAGTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAACTGCTCTTTAAGGGGGTGTGAGTT
581 ACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
22056858 CTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
646 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
22056923 TGTGTGCACACCCCCCCGG-CCCCCCGATCGTCGGAGCCCCAAAGTCGTCGATCAGGTTCTCCGG
711 TGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGA
* *
22056987 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATTTGGCACCAGGACAT-CCCGAGCCCAGCA
776 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* * * * **
22057051 TGTGCTGTCGTAACCCTC-GTCTGGTCTGATCTTAGACTAGGAATGAACTTTGTATG
841 TGTGCTGCCGTAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
22057107 CTTAGACTGGGAATGAACTCTGTATGCTTGAGTCAACCCATGAAACAAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
22057172 AGGCTAGAGGGGCGGGATGCACAAGCCGGGGATCAACCGGGTCCCCCTCTACATGCTGCTAATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGC-GATCC
* * * * * *
22057237 TACTACCCTAACCCTCCG-T-CAGGTCCAATCTTAGACTGGCAATGAACTCTGTATGCCTAAGCC
130 TGCTGCCATAACCCT-CGATCCA-GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
22057300 AACCGATGAAACGAGCGGGCAGACGGGCGGGCGAGCATTACGCCGACCAGAGAGACGGGATGCGC
193 AACCGACGAAACGAGC-GG--G-CGGGCGGGCG-GCACTACGTCGGCCAGAGAGACGGGATGCGC
* *
22057365 AAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGC
253 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCTGTGCCAATGC
*
22057430 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAG
318 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
22057495 ACGATTCGTTTTCTATTTTTCATGATTTTCGAAACTGTTTATGGTTCGGGATTTTTTAAAATTTT
383 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * * * * *
22057560 TTTGGAAGGCATTTTGGCCCTAAAGCTT-GTAGTCATGATCCTTGTATTTTTTTTGGCTTGCACA
448 TTCGG-AGGGATTTTGGCCCCAAA-CTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACA
* * *
22057624 AAAAAATTCAGCAAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTAT
511 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAAT
*
22057689 TTCAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATACTCTTTAAGGGGGTGT
576 TTCAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
22057754 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGTA
641 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
22057819 CATCAAGTGCGCACATCGCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
706 CATCATGTGCGCACA-C-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGT
* ** * ** *** *
22057883 TCTCCGATGATGCTCCGGTGATGGTGCTCCGGTGAAGAAAAATGCATCACCAGCACATGCTCGAG
769 TCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAG
* * * * * * **
22057948 CCCAGCATGTGCTGCCGCAACCCCCTGTCCAGTTCGATCTTAGACAGGGAATGAACTCTATATG
834 CCCAGCATGTGCTGCCGTAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
22058012 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGGAACGAGCGTGCGGGCGCTCAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** * *
22058077 CAGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTACTGCCATTCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCGA-TCC
* * ** * *
22058142 TGCTGCCATGACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGGACTCCGTATGCCTAAGCCAA
130 TGCTGCCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
22058207 CCGACGAAATGAACGGGCGGGCGGACGGGTGGGCTTCTTACGTCGGCCAGAGAGACAGGATGCGC
195 CCGACG--A--AACGAGCGGGCGGGCGGG-CGGC-AC-TACGTCGGCCAGAGAGACGGGATGCGC
* *
22058272 AAGCCGTGAATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTT-T-TGCATGCCAAT
253 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCTG--TGCCAAT
* * *
22058335 GCCATATATATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCA
316 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
22058400 AGACGATTCGTTTTCTATTTTTCATGATTTTCGAAACTGTTTATGGTTCGGGATTTTTTAAAATT
381 AGACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * * ** * * *
22058465 TTTTTGGAAGGCATTTTGGCCCTAAAGTTTTTAGTCGTGATCCTTGTATTTTTTTTGGCTTGCAC
446 TTTTCGG-AGGGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCAC
* * *
22058530 AAAAAAATTCAGCAAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCTA
510 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAA
* *
22058594 TTTCAGACACTTTAATCGCTACTGGCAGCAAACCTATAAAATCTCAAATACTCTTTAAGGGGGTG
575 TTTCAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
22058659 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGT
640 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *** *
22058724 ACATCATGTGCGCACACCCCCCCGGCCCCCTCGATCATTGGAACCCCAATGCCACCGATCAGGTT
705 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTT
* * *
22058789 CTACGGCGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
770 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
* *
22058854 CCAGCATGTGCTGCCATAACCCTCGGTCTAGTCCGATCTTAGACTTGGAATGAACTCCGTATG
835 CCAGCATGTGCTGCCGTAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
22058917 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
22058982 CGACCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTG-CGATCC
* * *
22059047 TACTACCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATTAACTCCGTATGCCTAAGCCAA
130 TGCTGCCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
22059112 CCGAAGAAACGA----GCGGAC--G-GG-----CG--GG-CAGACAGACGGGATGCGCAAGCCAT
195 CCGACGAAACGAGCGGGCGGGCGGGCGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * * * *
22059162 CGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTGTGTGCCAATACCATTTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCTGTGCCAATGCCATTTTT
*
22059227 ATGGCTTGTAAATTCATTCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-GAACT
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG-ACT
* * * * * * *
22059291 CGTTTTCTATTTTTCACGATTTTTGAAATTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTTGGA
389 CGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
** *
22059356 GAGCTTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCATAAAAAAAT
454 G-GGATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAAT
*
22059421 TTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCAATTT-AGA
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCAATTTCAGA
* *
22059484 CACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAGTTC
582 CACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
22059549 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGTACATCAT
647 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* *** * * *
22059614 GTGCGCACACCCCCCCCGGCCCCCTCGATCATTGGAACCCCAATGCCACCGATCAGGTTCTACGG
712 GTGCGCACA-CCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGA
*
22059679 CGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
776 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
* *
22059744 TGTGCTGCCATAACCCTCGGTCTAGTCCGATCTTAGACTTGGAATGAACTCCGTATG
841 TGTGCTGCCGTAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
*
22059801 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** ** * *
22059866 CGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCAAAAGGGT-CCCCTCTGTGTGCTGCCAATGC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTG-CGATCC
** ** * * *
22059930 TGCTGTTACT-ACCCTCGATCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCA
130 TGCTGCCA-TAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
22059994 ACCGACGAAACGAGCGGGCGGGCGACCGGGCGAGCACTACGTAGGCTAGAGAGACGGGATGCGCA
194 ACCGACGAAACGAGCGGGC-GG-G--CGGGCG-GCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
22060059 AGTCGTGGATCGATAGGGTGGTAGGTCGGTTTAGGCACATCTTCATATTTCTGC-ATGCCAATGC
254 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CTGTGCCAATGC
*
22060123 CATTTTTATGGCTTGTAAATTCATACAAAGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
318 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
22060188 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAATTTTT
383 ACGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * * *
22060253 TTCGGAAGGTG-TTTAGACCCCAAACTTGGTAGACGTGATCCTTTTATTTTTCTGGGCATGCACA
448 TTCGG-AGG-GATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACA
22060317 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAA
511 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCAA
*
22060382 TTT-AGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
575 TTTCAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
22060446 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCGC
640 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
22060511 ACATCATGTGCGCACACCCCCCCGCCGGCCCCCCCGAT-GCCGGAACCCCAATACCGCCGGTCAG
705 ACATCATGTGCGCACA--CCCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAG
* * * *
22060575 GTTCTCCGACGATGCTCCGACGGTGGTGCCTCAACGAAGAAAAATGTGGCACTAGCACATGCCCG
767 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCG
* ** * * *
22060640 AGCTCAGCATGTGCTATCGTAACCCTCGGGTC-GGTCCGATCTTAAACTGGGAATGAACTCCATA
832 AGCCCAGCATGTGCTGCCGTAACCCTC-GGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTA
22060704 TG
896 TG
* * * * * * *
22060706 CTTAGACAGGGAATGAACTCTGTATGCCTAAGTCAGCACACGAAACGAGCGTACGGGTGCTAAAC
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** *
22060771 CGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGTTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTG-CGATCC
** * * * *
22060836 TGCTGCTGTAACCCTCAATCCAGTCCAATCTTAGACTGGGAATGAACTCCGTACGCTTAAGCCAA
130 TGCTGCCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
22060901 -CGCACGAAATGAGCGGGTGGGTGGGCGGCACTACGCCGACCAGAGAGACGGGATGCGTAAGCCG
195 CCG-ACGAAACGAGCGGGCGGGCGGGCGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
*
22060965 TGGATCGATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTCTCCT-TGCCAATGCCATTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-CTGTGCCAATGCCATTT
* * *
22061029 TTATGGCTTGTAAATACGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
323 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* ** ** *
22061094 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATAGTTTAGGATTTTTTAAAATATTTTCGG
388 TCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* *
22061159 AGGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAA
453 AGGGA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAA
* *
22061224 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
517 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGA
* * *
22061289 CACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTC
582 CACTTTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
22061354 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAACACCCATCGCACATCAT
647 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * *
22061419 GTGCGCACACCCCCACCGGCCCCACCGATCGTCGAAACCCCAATGTCGTCGATCAGGTTCTCC-A
712 GTGCGCACACCCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGA
* * * *
22061483 GTGATGCTCCGACGATGGTGCCCCGACGAAAAAAAATGCGGCACCAGCACAAGCCCGAGCCCGAG
776 -CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC-AG
* * * *
22061548 CCCAACATGTGCTGCTGCAACCCTTGGTCT-GATCCGATGTTAGACTGGGAATGAACTCCGTATG
839 -----CATGTGCTGCCGTAACCCTCGGTCTAG-TCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
22061612 CTTAGATTGGGAATGAACTCTGTATGCCTAAGCCATCCGACGAAACGAGAGGGCGGGCG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
22061671 GGCGGGCGGG
Statistics
Matches: 4057, Mismatches: 422, Indels: 160
0.87 0.09 0.03
Matches are distributed among these distances:
882 3 0.00
883 505 0.12
884 294 0.07
885 2 0.00
886 2 0.00
887 2 0.00
888 2 0.00
891 1 0.00
893 3 0.00
894 1 0.00
895 5 0.00
896 166 0.04
897 9 0.00
899 22 0.01
900 415 0.10
901 597 0.15
902 8 0.00
903 387 0.10
904 191 0.05
905 763 0.19
906 354 0.09
907 317 0.08
908 2 0.00
909 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCGATCCT
GCTGCCATAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTCTGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCATGATTTTCGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAGG
GATTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACT
TTAATTGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGTAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:22061616 original size:26 final size:26
Alignment explanation
Indices: 22061580--22061638 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
22061570 CTTGGTCTGA
22061580 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
22061604 TCCGTATGCTTAGATTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
22061630 TCTGTATGC
1 TCCGTATGC
22061639 CTAAGCCATC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:22062367 original size:26 final size:26
Alignment explanation
Indices: 22062331--22062383 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22062321 CCGATCCAAT
*
22062331 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22062357 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22062383 C
1 C
22062384 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22063269 original size:26 final size:26
Alignment explanation
Indices: 22063233--22063285 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22063223 CCGATCCAAT
* *
22063233 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22063259 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22063285 C
1 C
22063286 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22063471 original size:902 final size:901
Alignment explanation
Indices: 22061612--22065101 Score: 4604
Period size: 902 Copynumber: 3.9 Consensus size: 901
22061602 ACTCCGTATG
* * *
22061612 CTTAGATTGGGAATGAACTCTGTATGCCTAAGCCATCCGACGAAACGAGAGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GGGCGGGC-GGCGGG
*
22061677 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAGCCATGGATCGA-AGGGTGGTAGGTGGGT
64 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
*
22061741 TTAGGCACACCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TTAGGCACAACTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
22061806 TCCCTTAGGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
22061871 AAACTTTTTACGGTTCGAGATTTTTTAAAACTTTTTCGAAAGGACTTTTGGCCCCAAACTTGGTA
259 AAAC-TTTT-GGGCTCGAGATTTTTTAAAACTTTTTCGAAAGGAATTTTGGCCCCAAACTTAGCA
* * *
22061936 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAA
322 GACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAA
*
22062001 GATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
387 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
22062066 CTGTAAAATCTCAGATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATATGGCGC
452 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCAGGAGGGATATGGCGC
* *
22062131 TAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGCGCACACCCTGCTGGCACCCTCC
517 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTGCTGGCACCCTCC
*
22062196 GATCATCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGGCGATGCTTCGGCGATGGTGCCCCGGG
582 GATCATCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGGCGATGCTTCGGCGATGGTGCCCCAGG
22062261 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGGGCCGAT
647 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGGGCCGAT
22062326 CCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
712 CCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
22062391 AACCCTCGAAATGAGAGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAACCCGGGGATG
777 AACCCTCGAAATGAGAGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAACCCGGGGATG
22062456 GGCTGGGTCCCCATCTGCGTGCTACCGATCCTGCTATCGTAACCCTCGATCCGATCCGAT
842 GGCTGGGTCCCCATCTGCGTGCTACCGATCCTGCTATCGTAACCCTCGATCCGATCCGAT
*
22062516 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GGGCGGGC-GGCGGG
* * * *
22062581 CGGGCACTACGCCGGTCAGAGAGACGGGATGCGCAAACCATGGATCAATAGGGTGGTAGGTGCGT
64 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
*
22062646 TTAGGCACAACTTCATATTTCTACCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TTAGGCACAACTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
22062711 TCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTTG
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
22062776 AAACTTTTGGGCTCGGGATTTTTTAAAATTTTTTC-AGAAGGAATTTTGGCCCCAAATTTAGCAG
259 AAACTTTTGGGCTCGAGATTTTTTAAAACTTTTTCGA-AAGGAATTTTGGCCCCAAACTTAGCAG
* * *
22062840 ATGTGATCCTTGTATTTTTTTTGGAATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAG
323 ACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAG
* *
22062905 ATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACC
388 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
22062970 TGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGAGGAGGGATA-GGGGCC
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCAGGAGGGATATGGCGCC
22063034 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTGCTGGCACCCTCCG
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTGCTGGCACCCTCCG
22063099 ATCATCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGGCGATGCTTCGGCGATGGTGCCCCAGGG
583 ATCATCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGGCGATGCTTCGGCGATGGTGCCCCAGGG
*
22063164 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGTAACCCTCGGGCCGATC
648 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGGGCCGATC
*
22063229 CAATCTTAGATTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
713 CAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
22063294 ACCCTCGAAATGAGAGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAACCCGGGGATGG
778 ACCCTCGAAATGAGAGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAACCCGGGGATGG
22063359 GCTGGGTCCCCATCTGCGTGCTACCGATCCTGCTATCGTAACCCTCGATCCGATCCGAT
843 GCTGGGTCCCCATCTGCGTGCTACCGATCCTGCTATCGTAACCCTCGATCCGATCCGAT
* *
22063418 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-A--AGC--G-GGCGGTCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGCGGGCGGCGGGCG
* * * *
22063477 GGCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
* * * * *
22063542 AGCCATATCTTGATATTTTCTACATGCCAATGCCATTTTTATGGCTTGTAACTTCATACAATGGT
131 AGGCACAACTTCATA-TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
22063607 CCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
22063672 AACTTTT--G--CG-G---------------TTC-------A---TGG---------T---AGAC
260 AACTTTTGGGCTCGAGATTTTTTAAAACTTTTTCGAAAGGAATTTTGGCCCCAAACTTAGCAGAC
* * * *
22063695 GTGATCCTTGTATTTTTGGTGGCATGCACAAAGAAAATCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGAT
* *
22063760 TTTGTGACCATTTGAAAGAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * *
22063825 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCAGGAGGGATATGGCGCCAA
* * * *
22063890 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGTGCACACCC--CCGGC-CCCCCTCGA
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTGCTGGCACCCTC-CGA
* * * * * *
22063952 TCGTCGAAACCCCAATACCGTCGGTCAGGTTCT-C--CGA--------CGATGGTGCCTC-GGCG
584 TCATCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGGCGATGCTTCGGCGATGGTGCCCCAGG-G
* * * * *
22064005 AAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGATC
648 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGGGCCGATC
* * * *
22064070 CGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
713 CAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * * *
22064135 ACCCAT-AAAACGAGCGTGCGGGTGCTCAACTGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATC
778 ACCC-TCGAAATGAGAGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAACCCGGGGATG
* * * ** ** * * * *
22064199 AG-TCGGGTCCCCCTCTACGTGCTGTCGATTTTGCTATCATAACCCTCGATTCGGTCTGAT
842 GGCT-GGGTCCCCATCTGCGTGCTACCGATCCTGCTATCGTAACCCTCGATCCGATCCGAT
* * * * *
22064259 CTTAGACTGAGAATGAACTCCGTATGCCTAAGCTAACCGATGAAACGAGCGGGTGGGCGAACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-GGGCGGGCG-GCGGG
* * * * * *
22064324 CAGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCC-TGGGATTGATAGGGTGGTAGATGGC
64 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCAT-GGATCGATAGGGTGGTAGGTGGG
* ** * * *
22064388 TTTAGGCACATCTTCATATTTCTATGTGCCAATCCCATTTCTATGGCTTGTAAATTCATGCAATG
128 TTTAGGCACAACTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
22064453 GTCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * * *
22064518 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG-GAGGAAGTTTTAGCCCCAAACTTGG
258 GAAAC-TTTT-GGGCTCGAGATTTTTTAAAACTTTTTCGAAAGGAA-TTTTGGCCCCAAACTTAG
* * * * *
22064582 TAGATGTGATCCTTGTATTTTTGTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
320 CAGACGTGATCCTTGTATTTTTGTTGGAATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTAC
* * *
22064647 ATGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCGGCAA
385 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * * * * *
22064712 ACCTGTAAAATCTCAAATGCTCTTTAAAGGAGTGTGAGTTCTTGTGGTTTGATGAGGGATAGGGG
450 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCAGGAGGGATATGGC
* ** * *
22064777 GCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACATCCCCCCCGGCCCCC
515 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCTGCTGGCACCC
* * * ** * * * * * * * *
22064842 T-CGATCACCGGAAGCCGAATATCGTCAGTTAGGTTCTCCGACGATGCTCCGACGATAGTGCCCC
579 TCCGATCATCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGGCGATGCTTCGGCGATGGTGCCCC
* ** * * *
22064906 -GAAGAAGAAAAATGCGGCACCAGCACATGTTCGAGCCTAGCATGTGCTACCGCAACCCTCGGTC
644 AG-GGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGGGC
* * ** * * * * *
22064970 GGGTCTGATCTTAGACTGCGAAGGAACTCCGTATGCTTAGACTGCGAAGGAACTCCGTATGCCTA
708 CGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * ** * * *
22065035 AGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGTGGGATGCGCAAGCCGGG
773 AGTCAACCCTCGAAATGAGAGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAACCCGGG
22065100 GA
838 GA
22065102 ACAGTCGGGT
Statistics
Matches: 2316, Mismatches: 192, Indels: 155
0.87 0.07 0.06
Matches are distributed among these distances:
840 3 0.00
841 277 0.12
842 2 0.00
845 1 0.00
847 1 0.00
848 110 0.05
849 78 0.03
851 5 0.00
852 36 0.02
853 182 0.08
854 56 0.02
855 1 0.00
856 1 0.00
865 3 0.00
868 1 0.00
870 3 0.00
875 3 0.00
876 1 0.00
880 2 0.00
889 1 0.00
890 1 0.00
891 2 0.00
892 226 0.10
893 4 0.00
894 103 0.04
895 121 0.05
896 4 0.00
897 3 0.00
898 2 0.00
901 1 0.00
902 430 0.19
903 221 0.10
904 107 0.05
905 324 0.14
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGGCGGGCGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACAACTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTGGGCTCGAGATTTTTTAAAACTTTTTCGAAAGGAATTTTGGCCCCAAACTTAGCAGACG
TGATCCTTGTATTTTTGTTGGAATGCACAAAAAAAATCAGCTAAAAACTCAAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTCAGGAGGGATATGGCGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTGCTGGCACCCTCCGATC
ATCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGGCGATGCTTCGGCGATGGTGCCCCAGGGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCAAGCATGTGCTGCCGCAACCCTCGGGCCGATCCAA
TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CTCGAAATGAGAGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAACCCGGGGATGGGCT
GGGTCCCCATCTGCGTGCTACCGATCCTGCTATCGTAACCCTCGATCCGATCCGAT
Found at i:22064103 original size:26 final size:26
Alignment explanation
Indices: 22064074--22064126 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22064064 CCGATCCGAT
22064074 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
22064100 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22064126 C
1 C
22064127 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22065015 original size:26 final size:26
Alignment explanation
Indices: 22064979--22065031 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
22064969 CGGGTCTGAT
22064979 CTTAGACTGCGAAGGAACTCCGTATG
1 CTTAGACTGCGAAGGAACTCCGTATG
22065005 CTTAGACTGCGAAGGAACTCCGTATG
1 CTTAGACTGCGAAGGAACTCCGTATG
22065031 C
1 C
22065032 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.25, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACTGCGAAGGAACTCCGTATG
Found at i:22065579 original size:26 final size:26
Alignment explanation
Indices: 22065550--22065602 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22065540 CCGATCCGAT
22065550 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
22065576 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22065602 C
1 C
22065603 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22067356 original size:26 final size:26
Alignment explanation
Indices: 22067320--22067372 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22067310 CCAGTCTGAT
*
22067320 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTTCGTATG
22067346 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTTCGTATG
22067372 C
1 C
22067373 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTTCGTATG
Found at i:22068269 original size:25 final size:26
Alignment explanation
Indices: 22068221--22068272 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
22068211 TCGGTCTGAT
**
22068221 CTTAGACTGTTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22068247 CTTAGACTGGGAAT-AACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22068272 C
1 C
22068273 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 12 0.50
26 12 0.50
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22069139 original size:26 final size:26
Alignment explanation
Indices: 22069110--22069162 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22069100 CCGGTCTGAT
*
22069110 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22069136 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22069162 C
1 C
22069163 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22069636 original size:906 final size:899
Alignment explanation
Indices: 22065165--22073673 Score: 9935
Period size: 886 Copynumber: 9.5 Consensus size: 899
22065155 GATCCGATCT
* * *
22065165 TAGATGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTTAGCTAAAAACTCGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
22065230 AAGATTTTGTGACCATTTGAAAAAAATTTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAA
66 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
22065295 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGG
131 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
22065360 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCT
196 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCC-
* * * *
22065425 CGATCGTCGAAACCCCAATACCGTCGGTCAGGTTCT-C--CGA-------CGATGGTGCCTCGGC
259 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGAC
* * *
22065480 GAAGAAAAATGCGGCACCAGCACATG-CTCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGA
324 GAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * *
22065544 TCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
388 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
22065609 CAACCCATAAAACGAGCGTGCGGGTGCTCAACTGGCCAGAGGGGCGGGATGCGTAAGCCGGGGAT
453 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATGAGCAAGCCGGGGAT
* * * * * *
22065674 C-AGTCGGGTCCCCCTCTACGTGCTGTCGATTCTGCTATCGTAACCCTC-GATTCGGTCTGATCT
518 CGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-TCGCAACCCTCAG-TCCGGTCCGATCT
* * * * **
22065737 TAGACT-GAGAATGAACTCCGTATGCCTAAGCTAACCGATGAAACGAGCGGGTGGGCGAACGGGC
580 TAGACTAG-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGG-GGGCGGGC
* * * * * *
22065801 AGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCC-TGGGATTGATAGGGTGGTAGATGGCT
643 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT-GGATCGATAGGGTGGTAGGTGGGT
*** * * *
22065865 TTAGGCACATCTTCATATTTCTATGTGCCAATCCCATTTCTATGGCTTGTAAATTCATGCAATGG
707 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
22065930 TCCCTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
772 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
22065995 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAGGAAGTTTTAGCCCCAAACTTGG
837 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGG
* * *
22066058 TAGATGTGATCCTTGTATTTTTGTTGGGATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
22066123 AAGATTTTGTGACCATTTGAAAAAAGTGTTCCTATTTCAGACACTTTAATGGCTACTGGCATCAA
66 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
22066188 ACGTGTAAAATCTCAAATGCTCTTTAA-GGGGCGTGAGTTCTCAAGGTTTGATGAGGGATAGGGG
131 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
22066252 GCCAATATCAGGGCCAAGTACCAGCATCCATCGCACATCATGTGCGCACACCCCCCTGGCCCCCT
196 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCC-
* * * *
22066317 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTTCGGTGATGGTGCCCCGA
259 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC-TCCGCGATGGTGCCCCGA
* ** * * * *
22066382 CAAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTACTACCACAA-CC-C--T-C-G
323 CGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
22066441 ---G-TC-----C--------AA-TCC-AAT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGT
388 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * *
22066486 CAACCCACGAAACGAGCGTG-GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGAT
453 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATGAGCAAGCCGGGGAT
* * * *
22066550 CGATCAGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTA
518 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-TCGCAACCCTCAGTCCGGTCCGATCTTA
* * * * *
22066615 CACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCAGGTGGGCGGG
582 GACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGG-GGGCGGGCGGG
* * *
22066680 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATATGGTGGTAGGTGGGTTTAG
646 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
22066745 GCACATCTTCATATTTCTGCGTGCCAATGCCATTTCTATGGCTTGTAAATTCATACAATGGTCTC
711 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
22066810 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACCACTGGTTTTCTATTTTTCACGATTTTTGAAAC
776 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * *
22066875 TTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
841 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGG
* * *
22066934 TAGATGTGAT-CTTGTATTTTTTTTCGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
1 TAGACGTGATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
22066998 CAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
65 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * * * *
22067063 AACCTATAAAATCTCGAATGCTCTTTAAAGGGGTGTGAGCTCTCGAGGTTTGCTGAGGGATAGCG
130 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * * *
22067128 GGCCAATATAAGGGCCAAGTACCATCGCCTATCGCACACCATGTGAG-A-A-----C-ACCCCCC
195 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
** * *
22067185 GATCGTCGGAACCCCAATGCCACCGGTTAGGTTCTCCGACGATGCTACGACGATGGTGCCCCGAC
260 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGTGCCCCGAC
* * * *
22067250 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGTATGTGCTGTCGCAACCCTCGATCCAGT
324 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * *
22067315 CTGATCTTAGATTGGGAATGAACTTCGTATGCTTAGAATGGGAATGAACTTCGTATGCCTAAGTC
389 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
22067380 AACCCACGAAACGAGCGT--GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATC
454 AACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATGAGCAAGCCGGGGATC
* * * * *
22067443 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGTCGTAACCCTCGGTCTGGTCTGATCTTAC
519 GATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-TCGCAACCCTCAGTCCGGTCCGATCTTAG
* *
22067508 ACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGA-GGGCGGGCGGGCGGGTGGG
583 ACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-ACGGGCGGG-GGGCGGGCGGG
* * ** *
22067572 CGCTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGTCTGGTGGGTGGGTTTAG
646 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
22067637 CCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
711 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
22067702 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCATGATTTTTGAAAC
776 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * *
22067767 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCCAACCTTGG
841 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGG
22067826 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* **
22067891 AAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGATAGCAA
66 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * * *
22067956 ACCTATAAAATCTCAAATGCTCTTTAAGTGGATGTGAGTTCTCGATGTTTGATGAAGGATAGAGG
131 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
22068021 GCCAATATAAGGGCCAATTACCAGCACCCATCGCACATCATGTGCACACACCCCCTCGGCCCCCT
196 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCC
* * * * * *
22068086 AATCGCCAGAACCCCAATGCCGTCGGTCAGGTTCACCTG-CGATGCTCTGGGGATGGTGCCCCGA
260 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GACGATGCTC-CGCGATGGTGCCCCGA
* * *
22068150 CGAAGAAAAATGCGGCACCAGCATATGCCCT-AGCCCAGCATGTGCTGCCGCAACCCTTGGTTCG
323 CGAAGAAAAATGCGGCACCAGCACATG-CCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
**
22068214 GTCTGATCTTAGACTGTTAATGAACTCCGTATGCTTAGACTGGGAAT-AACTCCGTATGCCTAAG
387 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * **
22068278 TCAACCCATGAAACGAGCGTGCGAGCGTTCAGCCGGCCAGAGGGGCA-GGATGCGCAAGTTGGGG
452 TCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-AGGGATGAGCAAGCCGGGG
* ** * * * *
22068342 ATC-AGTCGGAT--CCC-CT---T-CAACC--TGCTGC--CACAACCCTCAGTTCGGTCCAATCT
516 ATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCGCAACCCTCAGTCCGGTCCGATCT
* * * *
22068395 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGGC---GGGCGGGCGG
580 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGGGGCGGGCGG
* * * ** *
22068457 GCACTACGCCGGCCAAAGAGACGGGATACGCAAGCCGTGGATCTATAGGGTGGTAGGTTTGTTAA
645 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
** * * ** *
22068522 GGCACGCCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTTGTACAATGGCCC
710 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
22068587 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTCTCACGATTTTTGAAA
775 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * * *
22068652 CTTTTTAGGGTTCGGGATATTTTAAAATTTTTTCGAAAGGAGTTTTGGTCCCAAACTTGG
840 CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGG
*
22068712 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
22068777 AACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAACAA
66 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
22068842 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
131 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
22068907 GCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCACACCTCCCCCCGGCCCC
196 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCCCCCGGCCCC
* * *
22068972 TCTGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACGATGCTCCAGCAATGGTGCCCC
258 -CCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCC
* * * * * *
22069037 GATGAAGAAAAATGTGGCCCCAGCATATGCCTAAGCCCAGCATGTGCTGCCGCAACCCTTGGTCC
321 GACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* *
22069102 GGTCTGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAA
386 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * *
22069167 GTCAACCCATGAAACGATCATGCGGGAGCTCAGCTGGCCAGAGGGGTGGCATGAGCAAGTCGGGG
451 GTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATGAGCAAGCCGGGG
* * * * * * *
22069232 ATCGATCGAGTCTCCCTCTGCATGCTACCGATCCTACTATCGCAACCCTCACTCCGGTCCAATCT
516 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-TCGCAACCCTCAGTCCGGTCCGATCT
* * *
22069297 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAACGAGCGGGGGCGCGGGCA
580 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGGG-GCGGGCG
* * * * *
22069362 GGCACTACGCCGACCAGAAAGA-GGTGATGCGTAAGTCGTGGATCGATAGGGTGGTAGGTGGTTT
644 GGCACTACGCCGGCCAGAGAGACGG-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** * *
22069426 TAGAAACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTCGTAAATTCATAAAATGGT
708 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
** * * **
22069491 CAGTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTCAA
773 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * **
22069556 AACTTTTTAAGGTTCGGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCAACAAACTTGG
838 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGG
* *
22069618 TAGATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAG-TGAAAAACTCGAAGTGTA
1 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTA
* * *
22069682 CAAGATTTTGTGACCATTTGAAAAGAGTGTCCCTATTTTAGACATCTGTTAATGGCTACACTGGC
65 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA-CT-TTAATGGCT--ACTGGC
* *
22069747 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTCGTGAGTTCTTGAGGTTTGATGAGGGA
126 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCGAGGTTTGATGAGGGA
* *
22069812 -AGGGGGGCCAAATATAAGGGCCAAGTACCA-CACCAAATC-CACCATCATGTGTGCACCACACC
190 TA-GGGGGCC-AATATAAGGGCCAAGTACCAGCACC-CATCGCA-CATCATGTGCGCA-CAC-CC
* * * ** * * * * *
22069874 CTC-TCCCCCCAATCACCGGAACCTACAATG-CGTC-ATCAGGTTCTCCGGCGAATGCTCCTACA
249 CCCGGCCCCCCGATCGTCGGAACC-CCAATGCCGTCGGTCAGGTTCTCCGACG-ATGCTCC-GCG
** * * * *
22069936 ATGGTGCTTCGACGAAGAAAAATACGGCACCA-CA-ATGCC-GAGCCTAGCATGTGCTGTCGTTA
311 ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCG-CA
* * *
22069998 ACCCTCGGTCTGAATCTGATCTTAAGACTGGG-ATGAACTCCGTACTGCTTAGA-TAGG-ATGAA
375 ACCCTCGGTCCG-GTCTGATCTT-AGACTGGGAATGAACTCCGTA-TGCTTAGACTGGGAATGAA
* * * * * * * * *
22070060 CTCTGTATG-CTAAGTCAAGCCACGAAACAACCATACGGGCGCTCACCCGACC-GAAGGGGCA-G
437 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG-AGGGG-AGG
* * ** *
22070122 GATGCA-TAAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTGCTGCAACCC
500 GATG-AGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTC-GCAACCC
* * * *
22070186 TCGGTCCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
563 TCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC
* * * * *
22070251 GGGCAGGCGGACGGGCGGGCACTACACTGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATA
628 GGGC-GGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* *
22070316 GGGTGGTAGGTGGGGTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGACTTGT
692 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
*
22070381 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTAT
757 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* *
22070446 TTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
822 TTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTG
* * *
22070511 ACCCTAAGCTTGG
887 GCCCCAAACTTGG
* * *
22070524 TAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAACAA-TCAGCTAAAAGCTCGAACTGT
1 TAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGT
* * *
22070588 ACAAGATTTTGTGACCATTTGAAAAAAG-GGCCCTATTTCAGACACTTTAATGGCTACTGGAAGC
64 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
22070652 AAACCTGTAAAATCTCGAATGCTCTTTAAGCGGGG-GTGAGTTCTCGAGGTTTGATGAGGGATAC
129 AAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
22070716 GGGGCCAATATTAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCAGCCCC
193 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCC
* * * *** * *
22070781 CCCGATCCTTGGAACCCTAATGCTACCGATCAGGTTCTTCGACGATGCT-C-C---GG-GCCCCG
257 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCG
* * * *
22070840 ACGAAGAAAAATGCAGCACCAGCACATG-CTG-GCTACCGATCAGGTTCTTCGACGATGCTCCGG
322 ACGAAGAAAAATGCGGCACCAGCACATGCCTGAGC--CC-AGCA---T-GT-G-C--TG--CCGC
** * * ** * ** * **
22070903 GCCCCAACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCAGCATGTGCTACCGCAAC-CCTT
374 AACCC-TCG--G-----TCCG--GTCTG---AT--CTTAG--A-C-TG-G-GAATG-AACTCC--
* * * **
22070967 GGTCTGGTTCGATCTTAGACTAGGAACGAACTTTGTATGCCTAAGTCAACCCATGAAACGAGCGT
415 -G--T--AT-G--CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
* * ** * *
22071032 GCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCA-CAAGGAGAGGATCGATCGAGTCCCCCTCTG
472 GCGGGCGCTCAGCCGGCCAGAGGGGAGGGATG-AGCAAGCCGGGGATCGATCGGGTCCCCCTCTG
* * *
22071096 CGTGCTGCCGA-------TCG--------A-T-C--T--GATCTGAGACTAGGAATAAACTCCAT
536 CGTGCTGCCGATCCTGCTTCGCAACCCTCAGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGT
* * * * * * *
22071140 ATGCCTAAGTCAACCGAC---A-GAACGAGCGGGCAGGCGGGCGAGCACTATGTCGACCAGAGAG
601 ATGCCTAAGCCAACCGACGAAACGAACGGGCGGG-GGGCGGGCGGGCACTACGCCGGCCAGAGAG
* * *
22071201 ATGAGATTCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
665 ACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTG
** * * *
22071266 TGTGCCAAAGCCATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCCTCACGTGAAGT
730 CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGT
** * *
22071331 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAAGATTT
795 TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTT
*
22071396 TTTAAAATTTTTTCGGAA-AGCGTTTTGGCCCCAAACTTGG
860 TTTAAAATTTTTTCGGAAGA-AGTTTTGGCCCCAAACTTGG
* * * * *
22071436 TAGATGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAACTTGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
22071501 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAA
66 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
22071566 ACTTGTAAAATCGCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
131 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
22071631 GCCAACATAAGGGCCAAGTACTAGCACTCATCGCACATCATGTGCGCACAGCCCCCCGGGCCCTC
196 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCC
* * * * * *
22071696 CGATCATCGGAACCCCAATACC-TCTGGTTAGGTTCTCC-AGTGATGCTCCGACAATGATGCCCC
259 CGATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGA-CGATGCTCCG-CGATGGTGCCCC
* * * * * *
22071759 AACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTGGTCT
321 GACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
*
22071824 GATCCT-ATCTTAG-CTTGGGAATGAAC-CCTGTATGCTTAGACTGGGAATGAACTCCGTATGCC
386 GGT-CTGATCTTAGAC-TGGGAATGAACTCC-GTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * *
22071886 TAAGTCAACCCATAAAATGAGGGTGCGGGCACTCAACCGGCCAAAGGGGAGGGATGTGCAAGCTG
448 TAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATGAGCAAGCCG
* * * * * * * *
22071951 AGGATCGATCGGGTCCCCCTCTACGCGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGATCCGA
513 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCT-TCGCAACCCTCAGTCCGGTCCGA
* * * * *
22072016 TCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCAGGCGA
577 TCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGG-GGGCGG
* *
22072081 TCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
641 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * * *
22072146 GTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTTTGGCTTGTAAATTCATACAACG
706 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
22072211 GTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
771 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
22072276 AAAACTTTTTGCGGTTCAATATTTTTTAAAATTTTTTCGGAA-AGCGTTTTGGCCCCAAACTTGG
836 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGA-AGTTTTGGCCCCAAACTTGG
* * * *
22072340 TAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTTAGCTAAAAACTTGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
22072405 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACCGACAGCAA
66 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
22072470 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
131 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
22072535 CCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCACCACC
196 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCC
* * ** *
22072600 GATCGTCGGAACCCCTATGCCGCCGGTC-GGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGC
260 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC-GCGATGGTGCCCCGAC
* * * * *
22072664 AAAGAAAAATGTGGCACCAGCACATG-CTCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCTGG
324 GAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * *
22072728 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTCAGT
388 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
22072793 CAACACACGAAACGAGCGTGCGGGTGCTCAGCGGGCCAGAGGGGCA-GGATGAGCATGCTGGGGA
453 CAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-AGGGATGAGCAAGCCGGGGA
* * ** * * * *
22072857 TCGGTCGGGTCCCCCTCTTCGTGCTGCCGATTGTGCTGCTGCAACCGT-TGATCTGGTCCGATCT
517 TCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTC-GCAACCCTCAG-TCCGGTCCGATCT
* * * *
22072921 TAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGACCAAACAAAGCGGGCGGGCGGGCGGGC
580 TAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA-CGGGCGGG-GGGCGGGC
* * * * *
22072986 GGGCATTACGTCGGCCAGAGAGACGAGATGCGTAAGCCGTGCATCGATAGGGTGGTAGGT-GG--
643 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
22073048 T------A---T--T-TTTGTG--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
708 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* **
22073099 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAA
773 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * **
22073164 AACTTTTTATGGTTCGAGATTTTTTAAACTTTTTTC-GAAAAGAGTTTTTACCCCAAACTTGG
838 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGA-AGTTTTGGCCCCAAACTTGG
* * *
22073226 TAGACGTGATCCTTGTACTTTTGTTGGCATACACAAAAAGATTCAGCTAAAAACTCGAAGTGTAC
1 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
22073291 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAATGGCTACTGGCAGCAA
66 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
22073356 ACTTGTAAAATCGCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
131 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
22073421 GCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
196 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCC
** *
22073486 GATCG-CTGGAACCCCAACACCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
260 GATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCG-CGATGGTGCCCCGA
* * * * * *
22073550 TGAAGAAAAATACGACACC-GACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCC
323 CGAAGAAAAATGCGGCACCAG-CACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* *
22073614 AT-TCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGC
387 GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
22073674 TTAGACTGGG
Statistics
Matches: 6587, Mismatches: 784, Indels: 496
0.84 0.10 0.06
Matches are distributed among these distances:
866 2 0.00
867 100 0.02
868 7 0.00
869 1 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 1 0.00
875 14 0.00
876 519 0.08
877 126 0.02
878 109 0.02
879 3 0.00
880 3 0.00
881 1 0.00
883 1 0.00
885 5 0.00
886 884 0.13
887 141 0.02
888 19 0.00
889 161 0.02
890 145 0.02
891 4 0.00
892 732 0.11
893 246 0.04
894 13 0.00
895 11 0.00
896 6 0.00
897 8 0.00
898 6 0.00
899 16 0.00
900 135 0.02
901 210 0.03
902 436 0.07
903 163 0.02
904 499 0.08
905 11 0.00
906 754 0.11
907 106 0.02
908 53 0.01
909 71 0.01
910 54 0.01
911 116 0.02
912 426 0.06
913 48 0.01
914 4 0.00
915 4 0.00
916 41 0.01
918 3 0.00
919 6 0.00
920 35 0.01
921 4 0.00
922 3 0.00
923 2 0.00
924 1 0.00
926 3 0.00
927 3 0.00
929 1 0.00
930 1 0.00
931 2 0.00
932 1 0.00
933 1 0.00
935 6 0.00
936 4 0.00
937 12 0.00
938 80 0.01
939 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGCGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGAGGGATGAGCAAGCCGGGGATCGA
TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTTCGCAACCCTCAGTCCGGTCCGATCTTAGACT
AGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGGGGCGGGCGGGCACTA
CGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
ACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGAAGTTTTGGCCCCAAACTTGG
Found at i:22070913 original size:69 final size:69
Alignment explanation
Indices: 22070802--22070937 Score: 247
Period size: 69 Copynumber: 2.0 Consensus size: 69
22070792 GAACCCTAAT
*
22070802 GCTACCGATCAGGTTCTTCGACGATGCTCCGGGCCCCGACGAAGAAAAATGC-AGCACCAGCACA
1 GCTACCGATCAGGTTCTTCGACGATGCTCCGGGCCCCAACGAAGAAAAATGCGA-CACCAGCACA
22070866 TGCTG
65 TGCTG
22070871 GCTACCGATCAGGTTCTTCGACGATGCTCCGGGCCCCAACGAAGAAAAATGCGACACCAGCACAT
1 GCTACCGATCAGGTTCTTCGACGATGCTCCGGGCCCCAACGAAGAAAAATGCGACACCAGCACAT
22070936 GC
66 GC
22070938 CCGAGCCAGC
Statistics
Matches: 65, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
69 64 0.98
70 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.25, T:0.15
Consensus pattern (69 bp):
GCTACCGATCAGGTTCTTCGACGATGCTCCGGGCCCCAACGAAGAAAAATGCGACACCAGCACAT
GCTG
Found at i:22072763 original size:26 final size:26
Alignment explanation
Indices: 22072734--22072786 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22072724 CTGGTCCGAT
*
22072734 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22072760 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22072786 C
1 C
22072787 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22073657 original size:26 final size:26
Alignment explanation
Indices: 22073621--22073699 Score: 149
Period size: 26 Copynumber: 3.0 Consensus size: 26
22073611 CCCATTCGAT
22073621 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22073647 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22073673 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22073699 C
1 C
22073700 CTAAGTCAAC
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22074418 original size:26 final size:26
Alignment explanation
Indices: 22074382--22074434 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22074372 CTGATCTGAT
22074382 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
22074408 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
22074434 C
1 C
22074435 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:22075814 original size:882 final size:876
Alignment explanation
Indices: 22073673--22076163 Score: 3532
Period size: 882 Copynumber: 2.8 Consensus size: 876
22073663 ACTTCGTATG
* * * *
22073673 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGGACGGGC-GGACAC
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC-GGCAGG-CAC
** * * * *
22073737 TACGCCGGCCAGAGAGACAGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGATGGCTTTAGGCA
63 TACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCA
* * * *
22073802 CATCTTCATATTTATGTGTGCCAATCCCATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTA
128 CATCTTCAAATTTATGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* **
22073867 AGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
193 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
* *
22073932 TTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGAAGTTTTAGCCCCAAACTTGGTTGACGTGA
258 TTACGG-TCGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGA
*
22073997 TCCTTGTATTTTTGTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
321 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * * *
22074062 TGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAACCTATAAA
386 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
22074127 ATCTCAAATGTTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
451 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
22074192 AGGGTCAAGTA-TCAGCACCCGTCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCA
516 AGGGCCAAGTACT-AGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG-CG
* * **
22074256 GAACCCCAATGCTGCCGGTCAGGTTCTCCGACGATGCTCGGACGATGGCACCCCGGCAAAGAAAA
579 GAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCGG-CGATGGTGCCCCGGCAAAGAAAA
* * *
22074321 ATGCGGCACCAGCACATGCCCGA-CCCAGCATGTGCTGCCGCAACCCTCAG-TCTGATCTGATCT
643 ATGTGGCACCAGCACATG-CTGAGCCCAGCATGTGCTGCCGCAACCCTCAGTTC-GATCCGATCT
* * * *
22074384 TAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
706 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATAAACTATGTATGCCTAAGTCAACCCAC
* * *
22074449 GAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCGGCCGAG
771 GAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATCCGCAAGCTGGGGATCGACCGAG
22074514 TCCCACTCTGCGTGCTACCGCAACCCTCAGTCTGGTCCAAT
836 TCCCACTCTGCGTGCTACCGCAACCCTCAGTCTGGTCCAAT
* * ** * * *
22074555 CTTAGACTGAGAATGAACTCCTTATGCCTAAACCAACCGACAAAATGAACGGG-TG-A-GCACTA
1 CTTAGACTG-GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGCAGGCACTA
* *
22074617 CGCCGGCCAGAGAGATGGGATGCGCAAGCAGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACA
65 CGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
22074682 TCTTCAAATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
130 TCTTCAAATTTATGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
22074747 CCTTCAAGTGAAGTTTCATGGCAAGACAACTCGTTTTATGTTTTTCACGATTTTCAAAACTTTTT
195 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTT
* * *
22074812 ACGGTCTGGGATTTTTTAAAATTTTTTGGAAGGTGTTTTGGTCCCAAACTTGGTAGACGTGATCC
260 ACGGTC-GGGATTTTTTAAAATTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCC
* *
22074877 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
324 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
22074942 CCATTTCAAAAAAGTGTCCCCATTTCACACACTTTAATGGCTATTGGCAGCAAACTTGTAAAATC
389 CCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
22075007 TCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGG
454 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* **
22075072 GCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCGCCCTTGATCGTCGGAAC
519 GCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG-CGGAAC
* * * **
22075137 CCCTATGCCGCCGGTCAAGTTCTCCGGCGATGCTCTGGTGATGGTGCCCCGGTGAAGAAAAATGT
583 CCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTC-GGCGATGGTGCCCCGGCAAAGAAAAATGT
* * * * *
22075202 GGCACCAGCACATGCATGAGCCCAGCATGTGCTGCCACAACCCTCGGTTCGGTCCGATCATAAAC
647 GGCACCAGCACATGC-TGAGCCCAGCATGTGCTGCCGCAACCCTCAGTTCGATCCGATCTTAGAC
*
22075267 TGGGAATGAACTCCATATGCTTAGACTTGGAATAAACTATGTATGCCTAAGTCAACCCACGAAAC
711 TGGGAATGAACTCCATATGCTTAGACTGGGAATAAACTATGTATGCCTAAGTCAACCCACGAAAC
* * ** *
22075332 GAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATCCGTAAG-TCGGGGATCGATTGGGTCTC
776 GAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATCCGCAAGCT-GGGGATCGACCGAGTC-C
* * **
22075396 C-TTCTGTGTGCTGGCGCAACCCTC-GATCTGGTCCAAT
839 CACTCTGCGTGCTACCGCAACCCTCAG-TCTGGTCCAAT
*
22075433 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCGACCGATGAAACGAGCGGGCGGACAGGCACT
1 CTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGG-CAGGCACT
* *
22075498 ACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATAAATAGGGTGGTAGGTGGGTTTAGGCAC
64 ACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
22075563 ATCTTCAAATTTTTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGT-CCTTGA
129 ATCTTCAAATTTATGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT-A
**
22075627 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT-ATAATTTTCAAAACTTT
193 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
* * *
22075691 TTACGGATCGAGATTTTTTAAAATTCTTTTGGAAGGACTTTTTGCCCCAAACTTGGTAGACGTGA
258 TTACGG-TCGGGATTTTTTAAAATT-TTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGA
* * *
22075756 TCCTTGTATTTTTGTTGGCTTGCACTAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTG
321 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
22075821 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
386 TGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
22075886 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATA
451 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
22075951 AGGGCCAAGTACCAGCACCCACCGCGCATCATGTGCGCCCACCCCCCCCGGCCCCCCCGATCGCT
516 AGGGCCAAGTACTAGCACCCATCGCACATCATGTGCG--CACACCCCCCGGCCCCCCCGATCGC-
* * * * * *
22076016 GAAACCCCAATACCGCCAGTTAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACAAAGAAA
578 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCT-CGGCGATGGTGCCCCGGCAAAGAAA
* * * * * *
22076081 AATATGGTA-CAGCACATGCTCAAGCCCAGCATGTGCTGTCGCAACCCTCTGTCCGATCCGATCT
642 AATGTGGCACCAGCACATGCT-GAGCCCAGCATGTGCTGCCGCAACCCTCAGTTCGATCCGATCT
*
22076145 TAGACTAGGAATGAACTCC
706 TAGACTGGGAATGAACTCC
22076164 GATGCCTAAG
Statistics
Matches: 1427, Mismatches: 158, Indels: 47
0.87 0.10 0.03
Matches are distributed among these distances:
876 1 0.00
877 342 0.24
878 429 0.30
879 7 0.00
880 1 0.00
881 42 0.03
882 461 0.32
883 64 0.04
884 79 0.06
885 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (876 bp):
CTTAGACTGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGCAGGCACTAC
GCCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCAAATTTATGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTA
CGGTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTT
GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
CAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCGGAACCCC
AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCGGCGATGGTGCCCCGGCAAAGAAAAATGTGGCA
CCAGCACATGCTGAGCCCAGCATGTGCTGCCGCAACCCTCAGTTCGATCCGATCTTAGACTGGGA
ATGAACTCCATATGCTTAGACTGGGAATAAACTATGTATGCCTAAGTCAACCCACGAAACGAGCG
TACGGGCGCTCAGCCGGCCAGAGGGGCGGGATCCGCAAGCTGGGGATCGACCGAGTCCCACTCTG
CGTGCTACCGCAACCCTCAGTCTGGTCCAAT
Found at i:22076283 original size:12 final size:12
Alignment explanation
Indices: 22076266--22076291 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
22076256 TGCACGCTGT
22076266 CGATCCTGCTAC
1 CGATCCTGCTAC
22076278 CGATCCTGCTAC
1 CGATCCTGCTAC
22076290 CG
1 CG
22076292 CAACCCTTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.42, G:0.19, T:0.23
Consensus pattern (12 bp):
CGATCCTGCTAC
Found at i:22079347 original size:8 final size:8
Alignment explanation
Indices: 22079336--22079365 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
22079326 AAGCGGACAG
22079336 GCGGGCGA
1 GCGGGCGA
22079344 GCGGGCGA
1 GCGGGCGA
*
22079352 GCGGGCGG
1 GCGGGCGA
22079360 GCGGGC
1 GCGGGC
22079366 ACTACGTCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.07, C:0.27, G:0.67, T:0.00
Consensus pattern (8 bp):
GCGGGCGA
Found at i:22080334 original size:892 final size:884
Alignment explanation
Indices: 22076999--22080936 Score: 4399
Period size: 864 Copynumber: 4.4 Consensus size: 884
22076989 TCGATGCATA
*
22076999 AAAAAATTCAGCTAAAAACT-GAAGTGAACAAGATTTTGTGACCATTTTTGAAAATAAAGTGGTC
1 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA--TTTG-AAA-AAAGT-GTC
*
22077063 CCTATTTCAAGGACACTTTAAATGGCTACTGGCAGCAACACCTGTAAAATCTCAAATGCTCTTTA
61 CCCATTTC-A-GACACTTT-AATGGCTACTGGCAGCAA-ACCTGTAAAATCTCAAATGCTCTTTA
* * * *
22077128 AAGGGCTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGACCAAGTACCAGCA
122 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * *
22077193 CCCATCGCACATGATGTGAGCACACCCCCTCTCGG-CCCCCCGATCGTCGGAACCCCAATGTCGT
187 CCCATCGCACATCATGTGCGCACACCCCC-C-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGT
* *
22077257 CGGTCAGGTTCTCCGGTAATGGTGC-CCCGATGAAGAAAAATATGGCACCAGCACATGCCCGAGC
250 CGGTCAGGTTCTCC-G-AA-GATGCTCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * * **
22077321 CCAGCACGTGCTGTCGCAACCCTCTGTCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCT
312 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACT--GAATGAACTCCGTATGCT
* * * *
22077386 TGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGTCG
375 T-GACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGACCGTACGGGCGCTCAGCCG
* * * ** ** * *
22077451 GCCAGAGGGGC-GAGATGCACAAGCCGAGGATCGGTCAGGTCCCCCTCTGTGTGCTGCTGATCCT
439 GCCAGAGCGGCAG-GATGCGCAAGTCGAGGATCGACCAGGTCCCCCTCTACGTGCTACCGATCCT
* * * ** *
22077515 GCTATCACAACTCTCAGTCTAGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAAC
503 GCTATCACAACCCTCAATCTAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * * *
22077580 TGACGAAAC-GAGCGGGCGGGCAGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCTG
568 CGACGAAACAGAGCGGACGGGCGGGCCGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
*
22077644 TGGATCGATAGGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
633 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * *
22077709 TATAGCTTGTAAATTCATGCAATGGTCCTTTAAGCCTTCA-CTGAAGTTTCATGGCAATACGACT
698 TATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
* *
22077773 CGTTTTCTATTTTTCACGATTTTCAAAACGTTTTGCGGTTTGAGATTTTTTATAATTTTTTCGGA
763 CGTTTTCTATTTTTCACGATTTTCAAAACGTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGA
* * * * *
22077838 AGGAGTTTTGGCCCCAAACTTGGTAAATGTGATCCGTGTATTTTTATTGGCATGTAC
828 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
22077895 AAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCA
1 AAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
22077960 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGATG
65 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * **
22078025 TGAGTTCTCGGGGTTTGATAAGGGATAAAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
130 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * * * * *
22078090 ACATCATGTGCTCACACCCCCCCGACCCCTCTGATTGTCAGAACCCCAATGTCGTCGGCCAGGTT
195 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTT
*
22078155 CTCCGACGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAGC
260 CTCCGAAGATGCTCC--CGA---T-----G---AAGAAAAATACGGCACCAGCACATGCCCGAGC
** *
22078220 CCAGCATGTGCTATCGCAACCCTCGGTCTGGTCCAA---T---CT---T--A----G-A--C-TG
312 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGAATGAACTCCGTATGCTTG
**
22078266 A----GAATGAACTCCATATGCCTAAGTCAACCCACGAAACGACCGTACGGGCATTCAGCCGGCC
377 ACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGACCGTACGGGCGCTCAGCCGGCC
* * *
22078327 AGAGCGGTAGGATGCGTAAGTCGAGGATCGATCAGGTCCCCCTCTACGTGCTACCGATCCTGCTA
442 AGAGCGGCAGGATGCGCAAGTCGAGGATCGACCAGGTCCCCCTCTACGTGCTACCGATCCTGCTA
* * *
22078392 TCGCAACCCTCAATCTGAT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGA
507 TCACAACCCTCAATCTAATCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
*
22078456 CGAAACA-A---G-C--G-GGG--GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
571 CGAAACAGAGCGGACGGGCGGGCCGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
22078511 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
636 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
22078576 AGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGT
701 AGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
22078641 TTTCTATTTTTCACGATTTTCAAAACGTTTTGAGATTCAAGATTTTTTATAATTTTTTCGGAAGG
766 TTTCTATTTTTCACGATTTTCAAAACGTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
*
22078706 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCAC
831 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
22078760 AAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCA
1 AAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
22078825 TTTCAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
65 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
22078890 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC-GACACCCATCG
130 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCG
* * * * * * * *
22078954 CACATCATGAGCTCACA-CCCCCCGACCCCTCTGATCGCCGGAACCCCAATGCCGTCAGTCAGAT
194 CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* * * **
22079018 TCTCC-AGCGATGCTCCGGCGATGGTGCCCCGACGAAAAAAAATGCACCACCAGCACATGCCCGA
259 TCTCCGA-AGATGCTCC--CGA---T--------GAAGAAAAATACGGCACCAGCACATGCCCGA
* *
22079082 GCCCAGCATGGGCTACCGCAACCCT---T--GG-------TT---C-----G-A-TCCG-AT-CT
310 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGAATGAACTCCGTATGCT
* * *
22079123 TAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGACCGTATGGGCGCTCAACC-
375 T-GACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGACCGTACGGGCGCTCAGCCG
* * ** * * *
22079187 GACACGAGCGGCAGGATGCGTAAGTCGAGGATAAACCTGATCCCTCTCTACGTGCTACCGATCCT
439 GCCA-GAGCGGCAGGATGCGCAAGTCGAGGATCGACCAGGTCCCCCTCTACGTGCTACCGATCCT
* * * * * *
22079252 GCTGTCACAACCCTCAATCCAATCTGATCTTAGAATAGGAATGAAATTCGTATGCCTAAGCCAAC
503 GCTATCACAACCCTCAATCTAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
*
22079317 CGATGAAACAAGCGGACAGGCGGGCGAGCGGGCGAGCGGGCGGGCGGGCACTACGTCGGCCAGAG
568 CGACGAAAC-A---G--A-GC--G-GA-C--G-G-GCGGGC---C-GGCACTACGTCGGCCAGAG
*
22079382 AGACGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
614 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* * * *
22079447 TACGTGCCAATGCCATTTTT-TGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCATGTGAA
679 TGCATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAA
* **
22079511 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAATTTTTGCGGTTCGAGAT
744 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACGTTTTGCGGTTCGAGAT
** * ** *
22079576 TTTTTAAAATTTTTTCAAAAGGATTTTTGGCCCCAAACTTACTTAGATGTGATCCTTGTATTTTT
809 TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT-GGTAGACGTGATCCTTGTATTTTT
22079641 GTTGGCATGCAC
873 GTTGGCATGCAC
*
22079653 AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
1 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
22079718 TTCAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAACGCTCTTTAAGGGGGTGT
66 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
22079783 GAGTTCTGGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCC
131 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
22079848 CATCATATGCGCACA-CCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTC
196 CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* *
22079912 TCCGAAGATGCT-CCGATGAAGAAAAATGCGGCGCCAGCACATGCCCGAGCCCAGCATGTGCTGC
261 TCCGAAGATGCTCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
*
22079976 CGCAACCCTCGGTCCAGTCCAATCTTAGACTGCAAATGAACTCCGTATGCTTCGACTGGGAATGA
326 CGCAACCCTCGGTCCGGTCCAATCTTAGACTG--AATGAACTCCGTATGCTT-GACTGGGAATGA
* * * * * * * *
22080041 ACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGTTCAGCCGGCCGGAGGGGCGGG
388 ACTCCATATGCCTAAGTCAACCCACGAAACGACCGTACGGGCGCTCAGCCGGCCAGAGCGGCAGG
* * * * * * * * * **
22080106 ATGCGC-AGGCTGGGGATCGGCCGGGTCCCCCTTTGCATGCT-CCTGATCCTACTACCGTAACCC
453 ATGCGCAAGTC-GAGGATCGACCAGGTCCCCCTCTACGTGCTACC-GATCCTGCTATCACAACCC
** ** *
22080169 TTGATCTGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGT
516 TCAATCTAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AG-
* *
22080234 AGGCGGACGGGCGGGCCGGCGCTACG-CTGGCCA-AGAGACGGGATGCTGCAAATCCTGTGGATC
579 A-GCGGACGGGCGGGCCGGCACTACGTC-GGCCAGAGAGACGGGATGC-GC-AAGCC-GTGGATC
* * * * * *
22080297 GATAGGGTGATAGTTGAGTTCA-GCGACAGTACTTCATATTTCTGCGTTCGCAATGCCATTTTTA
639 GATAGGGTGGTAGGTGGGTTTAGGC-ACA-T-CTTCATATTTCTGCATGC-CAATGCCATTTTTA
* * *
22080361 TGGCTTGTAAATTC-TACAATGGTCCCTTAAGGCTTCACTGTGAAGTTTGATGGCCAAGACGACT
700 TAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA-TGTGAAGTTTCATGG-CAAGACGACT
* * * * *
22080425 CGGTTTT-TATTTTTTCATGATTTTTAAAACTTTTTACGGTTCTAGGATTTTTTTAAAATTTTTT
763 C-GTTTTCTA-TTTTTCACGATTTTCAAAACGTTTTGCGGTTCGA-GA-TTTTTTAAAATTTTTT
* * *
22080489 -GGCAAGGTGTTTTGG-CCCAAA-TTGGGTAGACGTGATCCCTGTATTTTTTTTGGCATGCAC
824 CGG-AAGGAGTTTTGGCCCCAAACTT-GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
22080549 AAAAAAATTCAGCTTAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCTCA
1 -AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
22080614 TTTTAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
65 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
22080679 TGAGTTCTTGAGGTTTGATGAGGGATA-GGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGC
130 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
22080743 ACATCATGTGCGCACACCCCCCCGGCACCCCCGATCGTCGAAACCCCAAT-CCTGTCGGTCAGGT
195 ACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCC-GTCGGTCAGGT
*
22080807 TCTCC-AACGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCAA
259 TCTCCGAA-GA---T---GC-----T--CCCGATGAAGAAAAATACGGCACCAGCACATGCCCGA
* * **
22080871 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATG
310 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACT--GAATGAACTCCGTATG
22080936 C
373 C
22080937 CTAAGCCAAC
Statistics
Matches: 2639, Mismatches: 266, Indels: 259
0.83 0.08 0.08
Matches are distributed among these distances:
854 1 0.00
855 2 0.00
857 2 0.00
858 1 0.00
859 3 0.00
860 2 0.00
861 1 0.00
863 4 0.00
864 416 0.16
865 335 0.13
866 1 0.00
867 4 0.00
869 1 0.00
870 1 0.00
871 1 0.00
873 169 0.06
874 1 0.00
877 2 0.00
878 52 0.02
879 1 0.00
880 1 0.00
881 2 0.00
882 1 0.00
883 1 0.00
885 4 0.00
886 6 0.00
887 20 0.01
888 58 0.02
889 118 0.04
890 47 0.02
891 11 0.00
892 400 0.15
893 187 0.07
894 34 0.01
895 16 0.01
896 134 0.05
897 218 0.08
898 49 0.02
899 61 0.02
900 6 0.00
901 2 0.00
902 4 0.00
903 9 0.00
904 155 0.06
905 2 0.00
908 1 0.00
911 91 0.03
913 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (884 bp):
AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
CATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
TCCGAAGATGCTCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
CGCAACCCTCGGTCCGGTCCAATCTTAGACTGAATGAACTCCGTATGCTTGACTGGGAATGAACT
CCATATGCCTAAGTCAACCCACGAAACGACCGTACGGGCGCTCAGCCGGCCAGAGCGGCAGGATG
CGCAAGTCGAGGATCGACCAGGTCCCCCTCTACGTGCTACCGATCCTGCTATCACAACCCTCAAT
CTAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGCGGAC
GGGCGGGCCGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATAGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
ATTTTCAAAACGTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
Found at i:22080987 original size:16 final size:16
Alignment explanation
Indices: 22080958--22080991 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
22080948 GACAAAATGA
*
22080958 GCGAGCGGGAGGGCGG
1 GCGAGAGGGAGGGCGG
*
22080974 GCGAGAGGGCGGGCGG
1 GCGAGAGGGAGGGCGG
22080990 GC
1 GC
22080992 ACTACGCCGA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.12, C:0.21, G:0.68, T:0.00
Consensus pattern (16 bp):
GCGAGAGGGAGGGCGG
Found at i:22081669 original size:26 final size:26
Alignment explanation
Indices: 22081640--22081692 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22081630 CCGATCTGAT
*
22081640 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22081666 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22081692 C
1 C
22081693 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22082575 original size:26 final size:26
Alignment explanation
Indices: 22082539--22082591 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22082529 CCAGTCCGAT
*
22082539 CTTAGTCTGGGAATGAAC-TCGGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
22082565 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
22082591 C
1 C
22082592 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:22083439 original size:26 final size:26
Alignment explanation
Indices: 22083403--22083453 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
22083393 GTGCTGCCAC
22083403 TATGCTTAGACTGGGAATGAACTCCG
1 TATGCTTAGACTGGGAATGAACTCCG
22083429 TATGCTTAGACTGGGAATGAACTCC
1 TATGCTTAGACTGGGAATGAACTCC
22083454 ATATACCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TATGCTTAGACTGGGAATGAACTCCG
Found at i:22083832 original size:881 final size:883
Alignment explanation
Indices: 22080975--22084542 Score: 4232
Period size: 899 Copynumber: 4.0 Consensus size: 883
22080965 GGAGGGCGGG
* ** * * **
22080975 CGAGAGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGTAAGCTATGGATCGATAGGG
1 CGAGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * *
22081040 TTGTAGGTGGATTTAGGTAAATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * **
22081105 TTCATACAATGGTCCCGTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTTATTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
**** * * * *
22081170 TTTTTATTTTCAAAATTTTTTGCGGTTCAGGATTTTTTAAAACTTTTTT-GGATGGATTTTTGGC
196 TCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGATTTTTGGC
* * * * * *
22081234 CCCAAATTTGGTAGACGTGATCCTTGTATTTTTTTTAGCGTGCAAAAAAAAATTCAGCTAAAAAC
260 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAAC
* *
22081299 TCGAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCT
325 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
22081364 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
390 ACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
*
22081429 AGGGATAAGGGGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACC
455 AGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CC
* * *
22081494 CCC-GTCCCCCCGATCACCGAAACCCTAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGA
519 CCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGA
* *
22081558 TGGTGCCCCGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTAAC
584 TGGT-CGCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT--CG--A-
* * *
22081623 CCTCGGTCCGATCTGATCTTAGGCTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTG
643 CCAC-GT-C-A-CTGA-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* ** * *
22081688 TATGCCTAAGTCAACCCGCGAAACAAGCGTGCGGGCTTTCAGCCGGCTAGAGGGGAGGGATGCGC
703 TATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCGC
* * *
22081753 AAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCT----AT--TG-T-----AACCCTCGGTCTG
767 AAGCCGGAGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCG
* ** * *
22081806 GTCTTATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
832 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-AA--A
* * *
22081861 CCGGGCGAGCGGACGAGCGGGTGGGCAGGC-ACTATGCCGGCCAGGGAGACGGGATGCGTAAGCC
1 -----CGAGC-G--G-GCGGGCGGGCA--CTAC-AT--CGGCCAGAGAGACGGGATGCGCAAGCC
*
22081925 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
52 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTT
* * *
22081990 TTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGACAAGACGAC
117 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
22082055 TCGTTTTCTATTTTTTACGATTTTCAAAAATTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGA
182 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
*** * ** * * *
22082120 AAACCTTTTCGGCCCCAAACTTTTTAGACGTGATCCTTCTATTTTTGCTGGCTTGCACAAAAAAA
247 AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * **
22082185 CTCAGCAAAAAACTCGAAGTGTACAATATTTTGTGACCATTCAAAAAAAGTGTCCCCATTTCAGA
312 TTCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
22082250 CACTTTAATGGCTACT-AGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
377 CACTTTAATGGCTACTGA-CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * *
22082314 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTACCAGCACCCATCACACATCA
441 CTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * ** * *
22082379 TGTGCGCACACCCCCCGGCACCCTCGATCGTTAGAAA-CCCAATACCATCGGTCAGGTTCTCCGG
506 TGTGCGCACACCCCCCGGCCCCCCCGATCG-CCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * ** * * *
22082443 CGATGCTCCGGCGATGGTGGCCCGGCGAAGAAAAATGCGGCACCAGCACATGCTTGAGGCAAGTA
570 CGATGCTCCGGTGATGGTCG-CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
22082508 TATGCTGTCATAACCTTCTGTCCAGTCCGATCTTAGTCTGGGAATGAACTCGGTATGCTTAGACT
634 TGTGC--TC--GACC-AC-GT-CA--CTGA-CTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* ** *
22082573 GGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAACAGGCCAGA
689 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGC-GGCCAGA
* * * * * * * * *
22082638 GGGGCAGGATCCGTAAGCCGGGGATCGATCGGGTCCCCCTCTGCGCGCTGCCAATCTTGCTACCA
753 GGGGCGGGATGCGCAAGCCGGAGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG
* * ** *
22082703 CAACCCTTGGTCCGGA-GCGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGATAA
818 CAACCCTCGGTCC-GATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
22082767 AA
882 AA
* * ** ** * *
22082769 CAAGCGGGCAGATGGGCGGTGC--CGGCCAGAAAGAC-GGATGCGCAAGCCGTGGATCGATAGGG
1 CGAGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
22082831 TGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* *
22082896 TTCATATAACGGTCCCTTAAGCCTTCACGTGAAGTTTCAT-----GACG--T--TTTT-TATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
** * *
22082951 TCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
196 TCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCC
* * *
22083016 CCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAGATTCAGCTAAAAACT
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACT
* * *
22083081 C-AAGGTGCACAAGATTTTGTGACCATTTGAAAAAA-TGTCCCCATTTTACACACTTTAATGGCT
326 CGAA-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
22083144 ACTGATAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
390 ACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* * * *
22083209 AGGGATAAGGGGCCAATATAAGTGCCAAGTACCAGTACCTATCGCACATCATGTGCGAACACCCC
455 AGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACC
* * * * *
22083274 CCTCCGGCCCCCCCGATCGTCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGATGCTCCGGG
518 CC-CCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGT
* * * * * * * *
22083339 GATGCTTCGCCGACGAAGAAAAATGTGACACCTA-TACAAGCTCGATCCTAGCATGTGCT-G-CC
582 GATG-GTCGCCGACGAAGAAAAATGCGGCACC-AGCACATGCCCGAGCCCAGCATGTGCTCGACC
* *
22083401 AC-T-A-TG-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATACCT
645 ACGTCACTGACTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * ** *
22083462 AAGTCAACCCACGAAACGAGCGTGCGGGAGCTCAGCTGCCAAGAGGGGCGGGATTAGCAAGCCAG
710 AAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCGGCC-AGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * *
22083527 AGATCGGTCGGGTCCCTCTCTGTGTGCTGGCGACCCTACTGCCGCAACCCTCAGTCCAATCCGAT
774 AGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCCGAT
*
22083592 CTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCGATGAAA
839 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
* * * *
22083637 TGAGCGGGCGGGCGGGCACTACATCGGCCAGACAGACGGGAAGCGCAAGCCGTGGATCGATAGAG
1 CGAGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
22083702 TGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
66 TGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
22083767 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACGACTCGTTTTCTATTTT
131 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
22083832 TCATGATTTTTAAAACTTTTTACGGATCGAGATTTTGTAAAATTTTTTCGGAAGGATTTTTGGCC
196 TCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCC
* * *
22083897 CCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGCCATGCACAAAAAAATTCTGCAAAAAACT
261 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACT
* *
22083962 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTCCAGACACTTTAATGGCTA
326 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
22084027 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTCTCAAGGTTTGATGA
391 CTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
* *
22084092 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCC
456 GGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * ** *
22084157 CAGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGATGATG
521 CGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATG
* * *
22084222 GT-GCCGTGCTGAAGAAAAATGGGGCACCAGTACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
586 GTCGCCG-AC-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT--CG--ACC
* *
22084286 ATCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGT
645 A-C-GT-C--ACTGA-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* ** * *
22084351 ATGCCTAAGTCAACCCACGAAACAAGCGTGCGGCCGCTCAGCCGGCCAG-GGGATGAGATGCGTA
704 ATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAG-CGGCCAGAGGGGCGGGATGCGCA
** * * * * * * **
22084415 AGTTGAAGATCGATCGGGTCCCTCTCTGCGTGCTACCGATCCTGTTGCCGTAACCCTCGATCCTT
768 AGCCGGAGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGA
*
22084480 TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
833 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
*
22084531 TGAGCGGGCGGG
1 CGAGCGGGCGGG
22084543 ATGCGCAAGC
Statistics
Matches: 2294, Mismatches: 303, Indels: 157
0.83 0.11 0.06
Matches are distributed among these distances:
867 4 0.00
868 204 0.09
870 13 0.01
871 127 0.06
873 1 0.00
875 1 0.00
876 4 0.00
877 5 0.00
878 6 0.00
879 95 0.04
880 11 0.00
881 293 0.13
882 287 0.13
883 16 0.01
884 87 0.04
885 7 0.00
886 1 0.00
887 4 0.00
888 1 0.00
891 4 0.00
892 127 0.06
893 13 0.01
894 120 0.05
895 96 0.04
896 6 0.00
897 1 0.00
898 16 0.01
899 675 0.29
900 5 0.00
901 1 0.00
902 1 0.00
903 6 0.00
905 2 0.00
906 1 0.00
908 1 0.00
910 2 0.00
911 49 0.02
912 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
CGAGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCAAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
GGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGTGATG
GTCGCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTCGACCACGTCA
CTGACTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
ACCCACGAAACAAGCGTGCGGGCGCTCAGCGGCCAGAGGGGCGGGATGCGCAAGCCGGAGATCGA
TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCCGATCCGATCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAA
Found at i:22084331 original size:26 final size:26
Alignment explanation
Indices: 22084302--22084354 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22084292 CCGGTCTGAT
*
22084302 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22084328 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22084354 C
1 C
22084355 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22086618 original size:693 final size:699
Alignment explanation
Indices: 22084668--22086732 Score: 2669
Period size: 718 Copynumber: 2.9 Consensus size: 699
22084658 TGGGCGAGCG
* ** * * * *
22084668 GGCGGGCAGGCACTATACCGGCCAGAGAGACGGGATACGCAAGCCATGGATCGATAGGGTGGTAG
1 GGCGGGCGGGCACTACGCCGGCTAGAAAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAG
** * *
22084733 GTGGGTTTAGGCACATCCCCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
22084798 CAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
*** * ** * **
22084863 TTTTTTGAACTTTTTACGGTTTCTGATTTTTTAAAATTTTTTCGGAAGGATTTTTCACCCCAAAC
196 TTTTCAAAACTTTTTGCGGTTTAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* ** *
22084928 TTGGTCGACGCGATAGTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
261 TTGGT-GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * * *
22084993 ATACAACATTTTGTGACCACTTGAAAAAAATGTCCCCATTTCAAACACTTTAATGGCTACTGGCA
325 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
22085058 GCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
390 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
* *
22085123 GGGGGCCAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCC
455 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CC
* * * *
22085188 CCCCGATCGCTGG-AACCCAAATGCCGCC-ATTTAGGTTCTCCGACGATGCTCCAACGATGCTGC
519 CCCCTATCGC-GGAAACCC-AATG-CGCCGA-TCAGGTTCT-C--C-ATGGT----CGATGGTG-
* *
22085251 AACCCCGGTGAAGAAAA-ATGCAGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGTAACCC
571 --CCCCGGTGAAGAAAATATG--GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCC
* * * * *
22085315 TCGATCCGGTCTGATCTTAGACTGGCAATGAATTTCGTATGCCTAAGCCAACCGACGAAACGAGC
632 TCGGTCCGATCCGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCGACG-AAC-A--
22085380 GAGCGGA
693 GAGCGGA
* * * *** *
22085387 CGGGCGGGCGGGCACTATGCCGGCTAGAGAGACGGGATGCGCAAGCCGCAGATCGATAGGGTCGT
1 --GGCGGGCGGGCACTACGCCGGCTAGAAAGACGGGATGCACAAGCCATGGATCGATAGGGTGGT
*
22085452 AGGTGGGTTTAGGCACATCTTCATATCTCTACGTGCCAATGCCATTTTT-TGGCTTGTAAATTCA
64 AGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
22085516 AACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
129 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * *
22085581 GATTTTTGAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGGCTCCA
194 GA-TTTTCAAAACTTTTTGCGGTTTAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
22085645 AACTT-G-GATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAGAATTCAGTTAAAAACTCGA
258 AACTTGGTGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGA
22085708 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
322 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
22085773 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGGTCTCAAGGTTTGATGAGGG
387 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
*
22085838 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCT
452 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG
*
22085903 G-CCCCCTAGATCACCGGAAACCCAATGTCGCCGATCAGGTTCT-C-TGGT-GATGGTGCCCCGG
516 GCCCCCCT--ATC-GCGGAAACCCAATG-CGCCGATCAGGTTCTCCATGGTCGATGGTGCCCCGG
22085964 TGAAGAAAATTATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCCGA
577 TGAAGAAAA-TATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCCGA
*
22086029 TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-A-A-A-C-GA
641 TCCGATCTTAGACTGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAACAGAGCGGA
* * * *
22086083 -GCGGGCGGGCACTACGCTGGCTAGAAAGACGGGATGCATAAGCTATGGATCGATAAGGTGGTAG
1 GGCGGGCGGGCACTACGCCGGCTAGAAAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAG
* *
22086147 GTGGGTTTAGGCACATGTTCATATTTCTATGTGCCAATG-CATTTTTATGGCTTGTAAATTCATA
66 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
22086211 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTCGCAAGACGACTCATTTTCTATTTTTCACGA
131 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* ** *
22086276 TTTTCAAAACTTTTTGCAGTTTGGGATTTTTTTAAAATTTCTTCGGAAGGAGTTTTGGCCCCAAA
196 TTTTCAAAACTTTTTGCGGTTTAAGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
22086341 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAGTTCAGCAAAAAACTGGAAG
260 CTTGGT-GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
* * *
22086406 TGTACAAGATTTTGGGACTATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGC
324 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
22086471 AGCAAA-CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGGGAT
389 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAT
* * * * *
22086535 AAGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCCCATCATGTGTGCGCACCCCCCGGCC
454 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * *
22086600 CTCCCTATCGTC-GAAACCCCAATGCTACCGGTCAGGTTCTCCGATGATGCTACGGCGAAGGTAC
519 C-CCCTATCG-CGGAAA-CCCAATGC-GCCGATCAGGTTCTCC-ATG--G-T----CGATGGTGC
* * * *
22086664 CCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-ATCGCAACCCTCG
572 CCCGGTGAAG-AAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GTAACCCTCG
22086728 GTCCG
635 GTCCG
22086733 GTAGACTGGG
Statistics
Matches: 1202, Mismatches: 108, Indels: 84
0.86 0.08 0.06
Matches are distributed among these distances:
692 28 0.02
693 188 0.16
694 52 0.04
695 109 0.09
696 91 0.08
697 39 0.03
698 1 0.00
699 1 0.00
700 1 0.00
701 1 0.00
703 1 0.00
704 1 0.00
705 170 0.14
706 4 0.00
707 3 0.00
708 6 0.00
713 3 0.00
715 1 0.00
717 37 0.03
718 197 0.16
719 28 0.02
720 105 0.09
721 135 0.11
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (699 bp):
GGCGGGCGGGCACTACGCCGGCTAGAAAGACGGGATGCACAAGCCATGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTCAAAACTTTTTGCGGTTTAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
TTGGTGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCTATCGCGGAAACCCAATGCGCCGATCAGGTTCTCCATGGTCGATGGTGCCCCGGTGAAGAAAA
TATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCCGATCCGATCTTA
GACTGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAACAGAGCGGA
Found at i:22086770 original size:26 final size:26
Alignment explanation
Indices: 22086734--22086784 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
22086724 CTCGGTCCGG
22086734 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCTGTATGCT
22086760 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCTGTATGC
22086785 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCTGTATGCT
Found at i:22087687 original size:26 final size:26
Alignment explanation
Indices: 22087637--22087689 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22087627 CCGATCTGAT
* **
22087637 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22087663 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22087689 C
1 C
22087690 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22088304 original size:904 final size:899
Alignment explanation
Indices: 22086013--22096510 Score: 13253
Period size: 876 Copynumber: 11.8 Consensus size: 899
22086003 ATGTGCTGCT
*
22086013 GTAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * ** **
22086078 AACGA----------GCGGGCGGGCACTACGCTGGCTAGAAAGACGGGATGCATAAGCTATGGAT
66 AACGAGCGGGGGCGGGCGGGCGGGCACTACGC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * **
22086133 CGATAAGGTGGTAGGTGGGTTTAGGCACATGTTCATATTTCTATGTGCCAATG-CATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* * *
22086197 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTCGCAAGACGACTCATTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * * *
22086262 TCTATTTTTCACGATTTTCAAAACTTTTTGCAGTTTGGGATTTTTTTAAAATTTCTTCGGAAGGA
260 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAGGA
*
22086327 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAGTTCAG
324 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* * * * *
22086392 CAAAAAACTGGAAGTGTACAAGATTTTGGGACTATTTGAAAAAAGTGTCCCCATTTTAGACACTT
389 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
22086457 TAATGGCTACTGGCAGCAAA-CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
454 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * * * *
22086521 GTTTGATGGGGGATAAGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCCCATCATGTGTG
519 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
* * * * ** *
22086586 CGCACCCCCCGGCCCTCCCTATCGTCGAAACCCCAATGCTACCGGTCAGGTTCTCCGATGATGCT
584 CACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCT
* * * * *
22086651 ACGGCGAAGGTACCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTA
648 CCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
22086716 TCGCAACCCTCGGTCC-G---G----TAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATG
713 TCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * ** * * * * *
22086773 AACTCTGTATGCCTAAGTTAACCCATGAAACGAGCACGCAGGCGCTCTGTCGGCCAGAAGGGCAG
778 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * *
22086838 GATGCGAAAGCCGGGGATCGGCCAGGTCACCCTCTGGGTGCTGGCGATCCTGCTACC
843 GATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
** * * *
22086895 ACAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGCACTCCGTATGCCTAAGCCAACCGATGA
1 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * *
22086960 AACGAGCGGGCGGGCGGGTGGGCGGGGACTACCCCGGTCAGAGAGACGGGATGCACATGCCGTGG
66 AACGAGC-GG-GGGCGGGCGGGCGGGCACTA-CGCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * *
22087025 ATCAATAGGGTGGTAGGTGGATTTAGGCAGATCTTCGTATTTCTGCATGCCAATGCCATTTTTTA
128 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA-TTTTTA
* * *
22087090 TGGCTTGTAAATTTATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGACAAGACGACTCG
192 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * * * * *
22087155 TTTTCTATTTTTTACGATTTTCAAAAATTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGAAAA
257 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
*** ** * * * *
22087220 CCTTTTTGGCCCCAAACTTTTTAGACGTGATCCTTCTATTTTTGCTGGCTTGCACAAAAAAACTC
322 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
22087285 AGCAAAAAACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
387 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
22087350 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
452 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
22087415 AGGTTTGATGAGGGATAGGGGGCCAATATAAAGGTCAAGTACCAGCACCCATCGCACATCATGTG
517 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
*
22087480 CGCACACCCCCCGGCCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCAGTGAT
582 CGCACACCCCCCGG-CCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGAT
* * * *
22087545 GCTTCGGTGATGGTGCCTCGACGAAGAAAAATGA-GGCACCAGCACATGCCCGAGCCCAGCATTT
645 GCTCCGGCGATGGTGCCCCGACGAAGAAAAAT-ACGGCACCAGCACATGCCCGAGCCCAGCATGT
** * * ** *
22087609 GCTACCGCAACCTTCGATCCGATCTGATCTTAGACTGGGAATGAACTTTGTATGCTTAGACTAGG
709 GCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* *
22087674 AATGAACTCCGTATGCCTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
774 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * *
22087739 GCGGTATGCACAAGTCGAGGATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACC
839 GCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * * * *
22087800 GCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAAAGAGCTCTGTATGCCTAAGCCAACCGACGA
1 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
22087865 AACGAGCGGGTGGACGGGCGGGCGAGCACTACGGCAGCCTGAGAGACGGGATGCGCAAGCCGTCG
66 AACGAGCGGG-GG-CGGGCGGGCGGGCACTAC-GCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
22087930 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
128 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* * *
22087995 GGCTTGTAAATTCATACCATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGATGACTCGT
193 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * * * *
22088060 TTTCTATTTTTCATGATTTTTGAAACGTTTTACGGTTCGGGACTTTTTAAAATTCTTTCGAAAAG
258 TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * ** * *
22088125 AGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTACCATGCATAAAATAATTCA
323 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
22088190 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
388 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * *
22088255 TTAATGTCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCCTTAAGGGGGTGTGAGTTCTTGA
453 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
22088320 -GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGC
518 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
22088384 GCACACCCCTCGACCCCCCCGATCG-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATG
583 GCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATG
* * * *
22088448 CTTCGGTGATGGTGCCCC-AGCGAAGAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTG
646 CTCCGGCGATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
22088512 CTATCGTAA----C---CC--TC-GA---T---CT--G-AT---CT--G-AT-CTTAGACTGGGA
710 CTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * * * **
22088551 ATGAACTCGGTATGCCTAAGTCAACCCACGGAACGAGTGTGCGGGCACTCAGTTGGCCAGAGGGG
775 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
* * * * *
22088616 CGGGATGCGCAAGCCGGGGATTGGTCGAGTCCCCCTCTGCGTGCTACCGATCCTGCTGCC
840 CGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * * * * *
22088676 GCAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTTCGTATACCTAAGCCAACTGACGA
1 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * * * * *
22088741 AAGGTGCGGGCAGGCGGACGGGTGGGCGCTACGCCGACCAGAGAGACAGGATGCGCAAACTGTGG
66 AACGAGCGGG--GGCGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGG
**
22088806 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTAT
128 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* * * *
22088871 GGCCTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTTCATGGCAAAACAACTCGT
193 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * * *
22088936 TTTCTATTTTTAATGATTTTTGAAACTTTTTACGATTCAAGATTTTTTAAAATTTTTTAGGAATG
258 TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
** * *
22089001 AGTTTTGGAACCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCACGCACAAAAAAATTTC
323 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTC
* *
22089066 -GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAAACAC
387 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
22089130 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCG
452 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * * * *
22089195 AGGTTTGATAAGGGATAGAGGGCCAATGTAAGGGCCATGTACCAGCACCCATCACATATCATGTG
517 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
22089260 CGCACACCCCCCTCGGCCCCCCCGATCGTC-GAA--ACAATGCTGCCGGTCAAGTTTTCCGGTGA
582 CGCACA-CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGA
* * * * ** ** * * *
22089322 TACTCCGACAATGGTGCTCCGGTGAAGAAAAATGTGGCACCAACACATGTCCGAGCCCAACATGT
644 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* ** * * * * * **
22089387 GCTGCCATAACCCTCGGTCCGGTCTGATTTTAGATTGGGATTGAACTCTGTATGCTTAGACTCAG
709 GCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
22089452 AATGAACTCAGCATGCCTTAGTCAACCCAGGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
774 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
** * * *
22089517 GCGGGATGCGCAAGTTGAGGATTGGTCGGGTCCCCCTCTGCATGCTGTCGATCCTGCTACC
839 GCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * * * *
22089578 GTAACCTTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGA
1 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
22089643 AACGAGC--GGGCGGGCGGGCGGGCACTACATCGGTCAGAGAGACAGGATGC-CAAGCCGTGGAT
66 AACGAGCGGGGGCGGGCGGGCGGGCACTAC-GCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * * *
22089705 CGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACGTGTCAATGCCATTTTTTTGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
* *
22089770 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACACGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* ** * * * * * *
22089835 TTTATTTTTCATTATTTTTGAAACTTTGT--GGTTTGGGATTTTTTAAAATTTTTTTGAAAGGAG
260 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
22089898 TTTTGGCCCCAAACTTGTTAGATGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGC
325 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
* * * *
22089963 TAAAAATTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCAGACACTTT
390 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
22090028 AATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
455 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
22090093 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
520 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * ** * * * * *
22090158 ATACCCCCTCGGCCCCCCTGATCGACAAAACCCAAATGCTGTCGCTAAGGTTCTCCGGCGATGCT
585 ACACCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCT
** * * * *
22090223 CCGGTAATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATTTACTA
648 CCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
22090288 TCGCAACCCTCGATCTGGT-TCGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTGTGAAT
713 TCGCAACCCTCGATCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* ** * * *
22090352 GAACTCCGTATGCCTAAGTCAAACCACGAATGGAGCATGCGGGCGTTCAGCCGGCCAGAGGGGTG
777 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* *** * * *
22090417 GGATGCGCAAGCCGATGATCAACCGGGTCCCCCTCTACGTGCTGTCGATCCTACTACC
842 GGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* ** * * * * * *
22090475 GCATTCCTCAGTCTGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAACCCAATCGACGA
1 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* ** * * *
22090540 AATGAGCGGGCGGGCGGGTAGACGGGCAAGCACTACGCCGACGAGAGAGACGAGATGCGCAAGCC
66 AACGAGC-GG-GGGC-GG--G-CGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCC
* * *
22090605 TTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACCATTT
124 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
22090670 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
189 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
22090735 TGGTTTTTTATTTTTCACAATTTTTAAAACTTTTTGCGGTTC-ATGATTTTTTAAAATTTTTTCG
254 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCG
*
22090799 GAAGGTGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
318 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
22090864 ATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
383 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
22090929 ACACTTTAATGGCTACTGGCAACGAACCTGTAAAATCTCCAATGCTCTTTAAGGGGGTGTGAGTT
448 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
22090994 CTCGAGGTTTGATGGGGGATAAGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCCCATCA
513 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
22091059 TGTGTGCGCACCCCTCCAGCCCCCCCGATCG-CTGGAACCCCAATGCCGCCGGTCAGG---T---
578 TGTGCGCACACCCC-CCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
22091117 ---T-CTCCGGCGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
641 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCA
*
22091178 TGTGCTGTCGCAA-CC-C--T-C-G---G-TC-----C----AAT-AA----G-AT-CTTATACT
706 TGTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
22091217 GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGCGCAGGCACTCAACCGGCCAGA
771 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * * ** * **
22091282 GGGGCGGGATGTGCAAGTC-AGGGATCGATCGGGTCGCCCTTTGCATGCTATCGATCATGCTGTC
836 GGGGCGGGATGCGCAAGCCGA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * * * *
22091346 GTAGCCCTCGATTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * * ** *
22091411 AACGAAC--GGGCGAGCGGGCGGGAACTATGCCGGACAGAGAGAC-GGATGTGTGAGCCGTAGAT
66 AACGAGCGGGGGCGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
22091473 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGA-GCCAATGCCATTTTTATG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC-ATGCCAATGCCATTTTTATG
* *
22091537 CCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
194 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
22091602 TTCTA-TTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTCAAAATTTTTTCGAAAGGA
259 TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
** * *** *
22091666 GTTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTTTTTGTTTTGCACAAAAAAATTTAG
324 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
* *
22091731 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCAGGCACTT
389 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
*
22091796 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTAAAGGGGGTGTGAGTTCTTGA
454 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGA
* *
22091860 GGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACTAGCACCCATCGCACATCATGTGC
518 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
22091925 GCACACCCCCCCGG-CCCCCCGATCGCCGGAACCCCAATACTGTCGGTCAGGTTCTCCGGCGATG
583 GCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATG
* * * * * * * * * *
22091989 CTCTGGTGATGGTTCCCTGACGAAGAAAAATGCGGCACCAGTAAATGCCAGAGCCCAACATATGC
646 CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
22092054 TGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTATACTGGGAA
711 TGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* *
22092119 TGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCGCTCA-CCGGCCAGAGGGGC
776 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * *
22092183 GGGATGCGCAAGCCGAGGATCGGTTGGGTCCTCCTCTGCATGCTGCGGATCCTGCTGCC
841 GGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
** * * *
22092242 GTAACCCTCGGTCCGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGATGA
1 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
22092307 AA--A----GAGCGGGCGGGCGGGCACTACACCGGCCAGAAAAAACCGGATGCGCAAGCCGTGGA
66 AACGAGCGGGGGCGGGCGGGCGGGCACTAC-GCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGA
**
22092366 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATG
129 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATG
*
22092431 GCTTGTAAATTCATACAAT-GTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTT
194 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
22092495 TTCTTTTTTTCACGATTTTCAAAA-TGTTTTGCGGTTCGGGATTTTTTAAAAATTTTTTC-GAAG
259 TTCTATTTTTCACGATTTTTAAAACT-TTTTACGGTTCGAGATTTTTT-AAAATTTTTTCGGAAG
* * * * * *
22092558 GATTTTTGGCCCCAAACCTGGTAGACATGTTCCTTGTATTTTTTTTGGCATGTACAAAAAAATTC
322 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
** * * * *
22092623 AGCTAAAAACTTAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTTTCCCTATTTCGGACAC
387 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
22092688 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGGTGTGAGTTCTTG
452 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
22092753 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCATGTG
517 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
22092818 CGTACACCCCCC-TCCCCCCCGATCGTCAGAACCCCAATACCGTCGGTCAGGTTCTCCGACGATG
582 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATG
* ** * * * * *
22092882 CTCCGGCGGTGGTGCCTTGATGAAGAAAAATATGACACCAGCACATGCCCAAGCCTAGCATGTGC
646 CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * *
22092947 TGCCGCAACCGTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
711 TGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * *
22093012 TGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGAGGC
776 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * *
22093077 GGGATGCGTAAGCCGGGGATCGG-CTGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACC
841 GGGATGCGCAAGCCGAGGATCGGTC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * * * * **
22093136 ATAACCCTCGATCCGATCCGATCTTAGACTGGAAATGAACTCCGTATCCCTAAGCCAACCGATAA
1 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
22093201 AACGAGCGGGCGGGCGGGCAGGCGGACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGT
66 AACGAGC-GG-GGGCGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
22093266 ATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT
128 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
*
22093331 GGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
193 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * *
22093396 TTTCTATTTTTCATGATTTTTGAAACTTTTTACTGTTCGTGATTTTTTTAAAATTTTTTCGGAAG
258 TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAAG
* * * *
22093461 GAGTTTTGGCCCCAAACTCGGTAGACATGATCCTTGTATTTTTGTTCGCATGCA-TAAAAAATTC
322 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
22093525 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
387 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
22093590 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGAGTGTGAGTTCTCG
452 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
22093654 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATTGCACATCATGTG
517 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * *
22093719 CGCACACCCCCTCCCGCCCCCCCGATCGCCGAAACCCCAATGCTGCCGGTCAGGTTCTCCGACGA
582 CGCACA-CCCC-CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGA
* * * * * *
22093784 TGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACTAGCACATGCTCGAGCCCAGCATGT
644 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* *
22093849 GCTATCACAA----C---CC--TC-G-TC-----C---G---G---TCCG-AT-CTTAGACTGGG
709 GCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * *
22093887 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGAGGGCGCTCAGCCGGACAGAGGG
774 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGG
* * * * * * * **
22093952 GCGGGATGCGCAAGCCG-GGCATCGATCGAGTCCCCCTTTACATGCCGTCGATCCTGCTGTC
839 GCGGGATGCGCAAGCCGAGG-ATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * * * * *
22094013 GTAACCCTCGATCCGATCCAATCTTAGACTTGGAATGAACTACGTATGCCTAAGCCAACCGATGA
1 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * *
22094078 AACGAGAGGGCTGGCGGACGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCACAAGCCGTGG
66 AACGAGCGGG--GGCGGGCGGGCGGGCACTACGC-GGCCAGAGAGACGGGATGCGCAAGCCGTGG
* ** ***
22094143 ATCGATAGGGTGGTAGGTGGATTTAGAAACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
128 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
*
22094208 GGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
193 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
22094273 TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
258 TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * * *
22094338 AGTTTTGGCCCTAAACCTGGTAGACATGATCAC-TGTATTTTT-TTGGCATGCACAAAAATATTC
323 AGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
22094401 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACAC
387 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
22094466 TTTAAGGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTCG
452 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
22094531 AGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTG
517 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * * *
22094596 CGTACA-CCCCC--TCCCCCCGATCGCCGGAACCTCAATGTCGTCGGTCAGGTTCT-C-CGA---
582 CGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGC
* * *
22094653 --C-G-G-TGGTGCCCCGACGAAGAAAAA-AGCGACACCAGCACATGTCCGAGCCCAGCATGTAC
647 TCCGGCGATGGTGCCCCGACGAAGAAAAATA-CGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
22094712 TGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGAA
711 TGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
* * * * *
22094777 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGAGGGCACTCAACCGGCCAGATGGGC
776 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * **
22094842 GGAATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCAATCCTGCTGTC
841 GGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* *
22094901 GTAACCCTCAGACCGGTCCGATCTTAGACTGGGAATGAACTCC-TATGCCTAAGCCAACCGACGA
1 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
22094965 AACGAGCGGGCGGGCGGACGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGTGT
66 AACGAGC-GG-GGGCGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
22095030 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGGCAATGCCATTTTTAT
128 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
*
22095095 GGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAGACGACTCGT
193 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* **
22095160 TTTTTATTTTTCACGATTTTTAAAACTTTTTTACGACTCGAGATTTTTTTAAAATTTTTTCGGAA
258 TTTCTATTTTTCACGATTTTTAAAAC-TTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGGAA
* * * * * *
22095225 GGAGTTTTGGTCCCAAACTCGGTACACATGATCCTTGTATTTTTGGTCGCATGCACAAAAAAAAT
321 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAAT
* *
22095290 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTAAAAAAAGTGTCCCCATTTCAGAC
385 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
22095355 ACTTTAATGGCTATTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
450 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
22095420 AGAGGTTTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATCGTACATCATG
515 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * ** * *
22095485 TGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATACCATCGGTTAGGTTCTCCGGTG
580 TGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCG
* * * *
22095550 ATGCTCCTGCGAAGGTGCACCGACAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
643 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATG
* * ** *
22095615 TGCTGCCGCAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGG
708 TGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* ** *
22095680 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTAGGCGCTCAGCCGGCCAAAGG
773 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * *
22095745 GGCAGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTATC
838 GGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
* * *
22095807 GTAACACTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * * *
22095872 AACGAACGGGCAGGCGGACGGACGGGTACTACGCCAGCCAGAGAGACGGGATGCGCAAGCTGTGG
66 AACGAGCGGG--GGCGGGCGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGG
*
22095937 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCTATTTTTAT
128 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
* * *
22096002 GGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTTACATGAAGTTTCATGGCAAGACGACTCGT
193 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
22096067 TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGG
258 TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
* * * *
22096132 ATTTTTGGGCCCAAACTTGGTAGAAGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCA
323 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* *
22096197 GCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACACT
388 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
22096262 TTAATGGCTACTCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCTCGA
453 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
22096327 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
518 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
22096392 GCACACCCCCCCGGTCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGTCGATG
583 GCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATG
* *
22096457 CTTCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCAGAGC
646 CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
22096511 TGACATCAAA
Statistics
Matches: 8369, Mismatches: 1020, Indels: 432
0.85 0.10 0.04
Matches are distributed among these distances:
860 35 0.00
861 345 0.04
862 145 0.02
863 24 0.00
864 2 0.00
865 1 0.00
866 1 0.00
867 4 0.00
868 2 0.00
869 3 0.00
870 4 0.00
871 231 0.03
872 42 0.01
873 2 0.00
874 2 0.00
875 15 0.00
876 836 0.10
877 540 0.06
878 14 0.00
879 18 0.00
880 6 0.00
881 2 0.00
882 65 0.01
883 4 0.00
884 1 0.00
885 3 0.00
886 9 0.00
887 224 0.03
888 172 0.02
889 63 0.01
890 12 0.00
891 199 0.02
892 27 0.00
893 271 0.03
894 592 0.07
895 480 0.06
896 344 0.04
897 685 0.08
898 43 0.01
900 3 0.00
901 194 0.02
902 520 0.06
903 135 0.02
904 703 0.08
905 390 0.05
906 427 0.05
907 222 0.03
908 306 0.04
909 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (899 bp):
GTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGGGGCGGGCGGGCGGGCACTACGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCG
GCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
CAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
GCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACC
Found at i:22090341 original size:26 final size:26
Alignment explanation
Indices: 22090312--22090364 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22090302 CTGGTTCGAT
* *
22090312 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22090338 CTTAGACTGTGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22090364 C
1 C
22090365 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22092109 original size:26 final size:26
Alignment explanation
Indices: 22092080--22092132 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22092070 CCGGTCTGAT
*
22092080 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22092106 CTTATACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
22092132 C
1 C
22092133 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22093009 original size:26 final size:26
Alignment explanation
Indices: 22092973--22093025 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
22092963 TCGGTCTGAT
22092973 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22092999 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22093025 C
1 C
22093026 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22093198 original size:894 final size:895
Alignment explanation
Indices: 22091209--22096510 Score: 7005
Period size: 894 Copynumber: 5.9 Consensus size: 895
22091199 CCAATAAGAT
* * * * * *
22091209 CTTATACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGCGCAGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
22091274 CGGCCAGAGGGGCGGGATGTGCAAGTCAGGGATCGATCGGGTCGCCCTTTGCATGCTATCGATCA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
* * *
22091339 TGCTGTCGTAGCCCTCGATTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * * **
22091404 CCGACG-AAACGAACGGGCGAGCGGGCGGGAACTATGCCGGACAGAGAGA-CGGATGTGTGAGCC
195 CCGACGAAAACG-A--GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACCGGATGCGCAAGCC
* *
22091467 GTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGA-GCCAATGCCATT
257 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-ATGCCAATGCCATT
* *
22091531 TTTATGCCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
321 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
** * *
22091596 CTCGTTTTCTA-TTTTCACGATTTTTGAAACTTTTTACGGTTCAAGA-TTTTTCAAAATTTTTTC
386 CTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTC
* * ** * * ***
22091659 GAAAGGAGTTTTGGCCCCAAACTTCATAGACGTGATCCTTGTATTTTTTTTGTTTTGCACAAAAA
451 GGAAGGAGTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
22091724 AATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTACCCATTTCA
516 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
22091789 GGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTAAAGGGGGTGTGAG
581 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAA-GGGGTGTGAG
* * *
22091853 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAAGTACTAGCACCCATCGCACAT
645 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
22091918 CATGTGCGCACACCCCCCCGGCCCCCCGATCGCCGGAACCCCAATACTGTCGGTCAGGTTCTCCG
710 CATGTGCGCACACCCCCCC--CCCCCCGATCGCCGGAACCCCAATACCGTCGGTCAGGTTCTCCG
* * * * * * * * * *
22091983 GCGATGCTCTGGTGATGGTTCCCTGACGAAGAAAAATGCGGCACCAGTAAATGCCAGAGCCCAAC
773 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGC
* * *
22092048 ATATGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
838 ATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
22092106 CTTATACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGTCGCTCA-C
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
22092170 CGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTTGGGTCCTCCTCTGCATGCTGCGGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
* * ** *
22092235 TGCTGCCGTAACCCTCGGTCCGGTCTAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * *
22092300 CCGATGAAAA-GA-GCGGGCGGGCGGGCACTACACCGGCCAGAAAAAACCGGATGCGCAAGCCGT
195 CCGACGAAAACGAGGCGGGCGGGCGGGCACTACGCCGGCCAG-AGAGACCGGATGCGCAAGCCGT
*
22092363 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
22092428 ATGGCTTGTAAATTCATACAAT-GTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
22092492 GTTTTCTTTTTTTCACGATTTTCAAAA-TGTTTTGCGGTTCGGGATTTTTTAAAAATTTTTTC-G
389 GTTTTCTATTTTTCACGATTTTCAAAACT-TTTTACGGTTCGAGATTTTTTAAAAATTTTTTCGG
* * * *
22092555 AAGGATTTTTGGCCCCAAACCTGGTAGACATGTTCCTTGTATTTTTTTTGGCATGTACAAAAAAA
453 AAGGAGTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
** * * * *
22092620 TTCAGCTAAAAACTTAAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTTTCCCTATTTCGGA
518 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
22092685 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAAGGGGTGTGAGTTC
583 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTC
* *
22092750 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATCGCACATCAT
648 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * *
22092815 GTGCGTACACCCCCCTCCCCCCCGATCGTCAGAACCCCAATACCGTCGGTCAGGTTCTCCGACGA
713 GTGCGCACACCCCCC-CCCCCCCGATCGCCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACGA
* ** * * * * *
22092880 TGCTCCGGCGGTGGTGCCTTGATGAAGAAAAATATGACACCAGCACATGCCCAAGCCTAGCATGT
777 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGT
* *
22092945 GCTGCCGCAACCGTCGATTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
842 GCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
22092999 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
22093064 CGGCCAGAGAGGCGGGATGCGTAAGCCGGGGATCGG-CTGGGTCCCCCTCTGCGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCATGCTACCGATC
* ** * * *
22093128 CTACTACCATAACCCTCGATCCGATCCGATCTTAGACTGGAAATGAACTCCGTATCCCTAAGCCA
130 CTGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACTGG-AATGAACTCCGTATGCCTAAGCCA
* *
22093193 ACCGA-TAAAACGAGCGGGCGGGCGGGCAGGCGGACACTACGCCGGCCAGAGAGACGGGATGCGC
194 ACCGACGAAAACGA---GGCGGGCGGGC--G-GG-CACTACGCCGGCCAGAGAGACCGGATGCGC
* * * * *
22093257 AAGCCATGTATCGATAGGGTGGTAGCTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
252 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
22093322 CATTTTTATGGCTTGTAAATTCATACAATGGTGCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
317 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* ** * * *
22093387 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACTGTTCGTGATTTTTTTAAAATTT
382 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTT
*
22093452 TTTCGGAAGGAGTTTTGGCCCCAAA-CTCGGTAGACATGATCCTTGTATTTTTGTTCGCATGCA-
447 TTTCGGAAGGAGTTTTGGCCCCAAACCT-GGTAGACATGATCCTTGTATTTTTGTTGGCATGCAC
*
22093515 TAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
511 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
22093580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGAGTG
576 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
* *
22093644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGTACCAGCACCCATTGC
641 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
22093709 ACATCATGTGCGCACACCCCCTCCCGCCCCCCCGATCGCCGAAACCCCAATGCTGCCGGTCAGGT
706 ACATCATGTGCGCACA--CCC-CCC-CCCCCCCGATCGCCGGAACCCCAATACCGTCGGTCAGGT
* * * * * *
22093774 TCTCCGACGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATGCGGCACTAGCACATGCTCGAG
767 TCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAG
** *
22093839 CCCAGCATGTGCTATCACAA----C---CC--TC-G-TC-----C---G---G---TCCG-AT-
832 CCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
22093876 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGCGAGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * ***
22093941 CGGACAGAGGGGCGGGATGCGCAAGCCGGGCATCGATCGAGTCCCCCTTTACATGCCGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
* * *
22094006 TGCTGTCGTAACCCTCGATCCGATCCAATCTTAGACTTGGAATGAACTACGTATGCCTAAGCCAA
131 TGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGAC-TGGAATGAACTCCGTATGCCTAAGCCAA
* * *
22094071 CCGATG-AAACGAGAGGGCTGGCGGACGGGCGGGCACTACGCTGGCCAGAGAGA-CGAGATGCAC
195 CCGACGAAAAC--GA-GGC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACCG-GATGCGC
* ** **
22094134 AAGCCGTGGATCGATAGGGTGGTAGGTGGATTTAGAAACATCTTCATATTTCTGTGTGCCAATGC
252 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
22094199 CATTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
317 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
*
22094264 ACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTT-AAAATTT
382 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTT
*
22094328 TTTCGGAAGGAGTTTTGGCCCTAAACCTGGTAGACATGATCAC-TGTATTTTT-TTGGCATGCAC
447 TTTCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACATGATC-CTTGTATTTTTGTTGGCATGCAC
*
22094391 AAAAATATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
511 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * * * *
22094456 TTTTAGACACTTTAAGGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTGAGGGGGTG
576 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTG
* *
22094521 TGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGC
641 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * **
22094586 ACATCATGTGCGTACA-CCCCCTCCCCCCGATCGCCGGAACCTCAATGTCGTCGGTCAGGTTCT-
706 ACATCATGTGCGCACACCCCCCCCCCCCCGATCGCCGGAACCCCAATACCGTCGGTCAGGTTCTC
* *
22094649 C--CGA-----C-G-G-TGGTGCCCCGACGAAGAAAAA-AGCGACACCAGCACATGTCCGAGCCC
771 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATA-CGGCACCAGCACATGCCCGAGCCC
* *
22094703 AGCATGTACTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATCAACTCCGTATG
835 AGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
22094764 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGAGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
22094829 CGGCCAGATGGGCGGAATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
22094894 TGCTGTCGTAACCCTCAGA-CCGGTCCGATCTTAGACTGGGAATGAACTCC-TATGCCTAAGCCA
131 TGCTGTCGTAACCCTC-GATCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCA
* * *
22094957 ACCGACG-AAACGAGCGGGCGGGCGGACGGGCGGGCACTACGTCGGCTAGAGAGACGGGATGCGC
194 ACCGACGAAAACGA---GGC--G-GG-CGGGCGGGCACTACGCCGGCCAGAGAGACCGGATGCGC
* *
22095021 AAGCCGTGTATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGGCAATGC
252 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
*
22095086 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCATTCACGTGAAGTTTCATGGCAAG
317 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * ** *
22095151 ACGACTCGTTTTTTATTTTTCACGATTTTTAAAACTTTTTTACGACTCGAGATTTTTTTAAAATT
382 ACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC-TTTTTACGGTTCGAGATTTTTTAAAAATT
* * * *
22095216 TTTTCGGAAGGAGTTTTGGTCCCAAA-CTCGGTACACATGATCCTTGTATTTTTGGTCGCATGCA
446 TTTTCGGAAGGAGTTTTGGCCCCAAACCT-GGTAGACATGATCCTTGTATTTTTGTTGGCATGCA
* *
22095280 CAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTAAAAAAAGTGTCCC
510 C-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
22095345 CATTTCAGACACTTTAATGGCTATTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
574 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGG
* *
22095410 TGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAATATAACGGCCAAGTACCAGCACCCATC
639 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * *
22095475 GTACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCTAATACCATCGGTTAGG
704 GCACATCATGTGCGCACA-CCCCCC--CCCCCCCGATCGCCGGAACCCCAATACCGTCGGTCAGG
** * * * *
22095540 TTCTCCGGTGATGCTCCTGCGAAGGTGCACCGACAAAGAAAAATACGGCACCAGCACATGCCCGA
766 TTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGA
* ** *
22095605 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTACG
831 GCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* **
22095670 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
22095735 CGGCCAAAGGGGCAGGATGCGTAAGCCGAGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
* * * * *
22095800 TGCTATCGTAACACTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACT-GGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
22095865 CCGACGAAACGAACGGGCAGGCGGACGGACGGGTACTACGCCAGCCAGAGAGACGGGATGCGCAA
195 CCGACG-AA--AAC--G-AGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACCGGATGCGCAA
* * *
22095930 GCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCTA
254 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
22095995 TTTTTATGGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTTACATGAAGTTTCATGGCAAGAC
319 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
22096060 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTT
384 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTT
* * * * *
22096124 TTGGAAGGATTTTTGGGCCCAAACTTGGTAGA-AGTGATCCTTGTATTTTTGTTGGTATGCACAA
449 TCGGAAGGAGTTTTGGCCCCAAACCTGGTAGACA-TGATCCTTGTATTTTTGTTGGCATGCACAA
* *
22096188 AAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATT
513 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
22096253 TCAGACACTTTAATGGCTACTCGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTT
578 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTG
*
22096318 AGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
643 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** *
22096383 ATCATGTGCGCACACCCCCCCGGTCCCCCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCT
708 ATCATGTGCGCACACCCCCCC---CCCCCCGATCGCCGGAACCCCAATACCGTCGGTCAGGTTCT
* * *
22096448 CCGTCGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCAGAGC
770 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGC
22096511 TGACATCAAA
Statistics
Matches: 3887, Mismatches: 407, Indels: 215
0.86 0.09 0.05
Matches are distributed among these distances:
861 52 0.01
862 1 0.00
864 1 0.00
865 1 0.00
868 2 0.00
869 3 0.00
870 2 0.00
871 2 0.00
872 38 0.01
873 3 0.00
874 2 0.00
875 9 0.00
876 170 0.04
877 464 0.12
878 8 0.00
879 8 0.00
880 3 0.00
881 5 0.00
882 1 0.00
885 3 0.00
886 4 0.00
887 222 0.06
888 178 0.05
889 53 0.01
890 9 0.00
891 196 0.05
892 23 0.01
893 268 0.07
894 482 0.12
895 60 0.02
896 119 0.03
897 61 0.02
898 12 0.00
900 2 0.00
901 188 0.05
902 221 0.06
903 61 0.02
904 396 0.10
905 61 0.02
906 274 0.07
907 208 0.05
908 1 0.00
909 2 0.00
911 6 0.00
913 1 0.00
914 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCATGCTACCGATCC
TGCTGTCGTAACCCTCGATCCGGTCCGATCTTAGACTGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAAACGAGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACCGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACCTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCCCCCCCGATCGCCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACGATGCT
CCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:22094767 original size:26 final size:26
Alignment explanation
Indices: 22094738--22094790 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22094728 CCGGTCTGAT
22094738 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
*
22094764 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
22094790 C
1 C
22094791 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:22095680 original size:26 final size:26
Alignment explanation
Indices: 22095644--22095693 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
22095634 CCAATCTGAT
22095644 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
22095670 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
22095694 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:22097537 original size:59 final size:58
Alignment explanation
Indices: 22097430--22097544 Score: 205
Period size: 59 Copynumber: 2.0 Consensus size: 58
22097420 CATGAATTAC
22097430 GTGGAAGAAACATGGCTATTAAAAAAAAAAATTTGGAATCGCTATTGAAAAGAATCAG
1 GTGGAAGAAACATGGCTATTAAAAAAAAAAATTTGGAATCGCTATTGAAAAGAATCAG
22097488 GTGGAAGAAACATGGCTATTAAAAAATAAAAATTAT-GAATCGCTATTGAAAAGAATC
1 GTGGAAGAAACATGGCTATTAAAAAA-AAAAATT-TGGAATCGCTATTGAAAAGAATC
22097545 GAACCCAAGC
Statistics
Matches: 55, Mismatches: 0, Indels: 3
0.95 0.00 0.05
Matches are distributed among these distances:
58 26 0.47
59 28 0.51
60 1 0.02
ACGTcount: A:0.49, C:0.09, G:0.19, T:0.23
Consensus pattern (58 bp):
GTGGAAGAAACATGGCTATTAAAAAAAAAAATTTGGAATCGCTATTGAAAAGAATCAG
Found at i:22099968 original size:19 final size:19
Alignment explanation
Indices: 22099944--22099983 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
22099934 ACTTGTCCTT
*
22099944 TTAGATTGAAAAGTTTGAG
1 TTAGATAGAAAAGTTTGAG
* *
22099963 TTAGATAGGAGAGTTTGAG
1 TTAGATAGAAAAGTTTGAG
22099982 TT
1 TT
22099984 GGACTTAAAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.33, C:0.00, G:0.30, T:0.38
Consensus pattern (19 bp):
TTAGATAGAAAAGTTTGAG
Found at i:22100206 original size:12 final size:12
Alignment explanation
Indices: 22100189--22100213 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
22100179 TGAAGATTTT
22100189 TTTTTCTAGAAA
1 TTTTTCTAGAAA
22100201 TTTTTCTAGAAA
1 TTTTTCTAGAAA
22100213 T
1 T
22100214 CCCAATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.08, G:0.08, T:0.52
Consensus pattern (12 bp):
TTTTTCTAGAAA
Found at i:22108929 original size:6 final size:6
Alignment explanation
Indices: 22108905--22108942 Score: 51
Period size: 6 Copynumber: 6.5 Consensus size: 6
22108895 ACGAAAGTTA
**
22108905 TAATTT TAAAAT T-ATTT TAATTT TAATTT TAATTT TAA
1 TAATTT TAATTT TAATTT TAATTT TAATTT TAATTT TAA
22108943 AATTTCAAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
5 3 0.11
6 24 0.89
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (6 bp):
TAATTT
Found at i:22109873 original size:480 final size:480
Alignment explanation
Indices: 22108959--22112328 Score: 6441
Period size: 480 Copynumber: 7.1 Consensus size: 480
22108949 AAATTTCTTA
*
22108959 TTTTAAT--TTTTCATAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
1 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
*
22109022 TTTGTTTTTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
66 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
*
22109087 GCTGTGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
131 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
*
22109152 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATTGGTGCTTAATGTGAATA
196 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
22109217 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
261 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
*
22109282 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAAGCATTGTTTTA
326 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
*
22109347 GCAGGTTTTTAAATGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
391 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
22109412 AGAAACTTGGTAAAACTTGCGTTGG
456 AGAAACTTGGTAAAACTTGCGTTGG
22109437 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
1 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
22109502 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
66 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
* *
22109567 GCTGTGTTTCATACTTATTTGCTTTTTAGATACATTTTTACGTGCTCTAAGGATTTTGAGGAATT
131 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
22109632 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
196 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
22109697 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
261 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
*
22109762 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAAGCATTGTTTTA
326 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
*
22109827 GCAGGTTTTTAAATGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
391 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
22109892 AGAAACTTGGTAAAACTTGCGTTGG
456 AGAAACTTGGTAAAACTTGCGTTGG
22109917 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
1 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
*
22109982 TTTGTTTCTGAACAATTCTGGGCATAAAAATCATTCGCACGATTATCGCACGATTTTAATTTTTC
66 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
22110047 GCTGCGTTTCATACTTA----------A-A-ACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
131 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
22110100 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
196 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
22110165 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
261 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
22110230 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
326 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
22110295 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
391 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
22110360 AGAAACTTGGTAAAACTTGCGTTGG
456 AGAAACTTGGTAAAACTTGCGTTGG
22110385 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
1 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
22110450 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
66 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
22110515 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
131 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
22110580 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
196 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
22110645 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
261 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
22110710 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
326 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
22110775 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
391 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
22110840 AGAAACTTGGTAAAACTTGCGTTGG
456 AGAAACTTGGTAAAACTTGCGTTGG
22110865 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
1 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
* *
22110930 TTTGTTTCTCAACAATT-TCAGGCAT-AAAACCATTCGCACGATTATCGCACGATTTTTAATTTT
66 TTTGTTTCTGAACAATTCT-GGGCATAAAAACCATTCGCACGATTATCGCACGA-TTTTAATTTT
*
22110993 TCGCTGTGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAA
129 TCGCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAA
22111058 TTACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAA
194 TTACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAA
22111123 TAATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAA
259 TAATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAA
22111188 TTTTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTT
324 TTTTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTT
22111253 TAGCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAAC
389 TAGCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAAC
22111318 AAAGAAACTTGGTAAAACTTGCGTTGG
454 AAAGAAACTTGGTAAAACTTGCGTTGG
22111345 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTT-AAAACATCAGAC
1 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
22111409 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
66 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
22111474 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
131 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
22111539 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
196 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
22111604 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
261 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
22111669 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
326 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
*
22111734 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAGCTCACTCAAACAA
391 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
* *
22111799 AGAAACTCGGCAAAACTTGCGTTGG
456 AGAAACTTGGTAAAACTTGCGTTGG
*
22111824 TTTTCATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
1 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
22111889 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
66 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
22111954 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
131 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
22112019 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
196 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
22112084 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
261 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
22112149 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
326 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
22112214 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
391 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
22112279 AGAAACTTGGTAAAACTTGCGTTGG
456 AGAAACTTGGTAAAACTTGCGTTGG
22112304 TTTTAATAATTTTCGTAGTGTTAAG
1 TTTTAATAATTTTCGTAGTGTTAAG
22112329 NNNNNNNNNN
Statistics
Matches: 2849, Mismatches: 24, Indels: 36
0.98 0.01 0.01
Matches are distributed among these distances:
468 462 0.16
469 1 0.00
470 1 0.00
478 8 0.00
479 471 0.17
480 1906 0.67
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.38
Consensus pattern (480 bp):
TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
AGAAACTTGGTAAAACTTGCGTTGG
Found at i:22111771 original size:959 final size:960
Alignment explanation
Indices: 22108959--22112328 Score: 6441
Period size: 948 Copynumber: 3.5 Consensus size: 960
22108949 AAATTTCTTA
*
22108959 TTTTAAT--TTTTCATAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
1 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
*
22109022 TTTGTTTTTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
66 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
*
22109087 GCTGTGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
131 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
*
22109152 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATTGGTGCTTAATGTGAATA
196 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
22109217 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
261 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
*
22109282 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAAGCATTGTTTTA
326 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
*
22109347 GCAGGTTTTTAAATGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
391 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
22109412 AGAAACTTGGTAAAACTTGCGTTGGTTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGG
456 AGAAACTTGGTAAAACTTGCGTTGGTTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGG
22109477 ATTTTGCAGCTTAAAAACATCAGACTTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCAC
521 ATTTTGCAGCTTAAAAACATCAGACTTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCAC
*
22109542 GATTATCGCACGATTTTAATTTTTCGCTGTGTTTCATACTTATTTGCTTTTTAGATACATTTTTA
586 GATTATCGCACGATTTTAATTTTTCGCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTA
*
22109607 CGTGCTCTAAGGATTTTGAGGAATTACATATGAGTGATCTTCATATTTGGATATTATTTATGAAG
651 GGTGCTCTAAGGATTTTGAGGAATTACATATGAGTGATCTTCATATTTGGATATTATTTATGAAG
22109672 TTGTTATCGGTGCTTAATGTGAATAATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCA
716 TTGTTATCGGTGCTTAATGTGAATAATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCA
22109737 CTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGC
781 CTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGC
* *
22109802 TTTAAAATATGAAAGCATTGTTTTAGCAGGTTTTTAAATGGAAATTAATTTGAATATCTCGAATC
846 TTTAAAATATGAAGGCATTGTTTTAGCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATC
22109867 CAATGTTTTAAACTCACTCAAACAAAGAAACTTGGTAAAACTTGCGTTGG
911 CAATGTTTTAAACTCACTCAAACAAAGAAACTTGGTAAAACTTGCGTTGG
22109917 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
1 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
*
22109982 TTTGTTTCTGAACAATTCTGGGCATAAAAATCATTCGCACGATTATCGCACGATTTTAATTTTTC
66 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
22110047 GCTGCGTTTCATACTTA----------A-A-ACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
131 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
22110100 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
196 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
22110165 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
261 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
22110230 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
326 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
22110295 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
391 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
22110360 AGAAACTTGGTAAAACTTGCGTTGGTTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGG
456 AGAAACTTGGTAAAACTTGCGTTGGTTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGG
22110425 ATTTTGCAGCTTAAAAACATCAGACTTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCAC
521 ATTTTGCAGCTTAAAAACATCAGACTTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCAC
22110490 GATTATCGCACGATTTTAATTTTTCGCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTA
586 GATTATCGCACGATTTTAATTTTTCGCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTA
22110555 GGTGCTCTAAGGATTTTGAGGAATTACATATGAGTGATCTTCATATTTGGATATTATTTATGAAG
651 GGTGCTCTAAGGATTTTGAGGAATTACATATGAGTGATCTTCATATTTGGATATTATTTATGAAG
22110620 TTGTTATCGGTGCTTAATGTGAATAATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCA
716 TTGTTATCGGTGCTTAATGTGAATAATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCA
22110685 CTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGC
781 CTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGC
22110750 TTTAAAATATGAAGGCATTGTTTTAGCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATC
846 TTTAAAATATGAAGGCATTGTTTTAGCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATC
22110815 CAATGTTTTAAACTCACTCAAACAAAGAAACTTGGTAAAACTTGCGTTGG
911 CAATGTTTTAAACTCACTCAAACAAAGAAACTTGGTAAAACTTGCGTTGG
22110865 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
1 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
* *
22110930 TTTGTTTCTCAACAATT-TCAGGCAT-AAAACCATTCGCACGATTATCGCACGATTTTTAATTTT
66 TTTGTTTCTGAACAATTCT-GGGCATAAAAACCATTCGCACGATTATCGCACGA-TTTTAATTTT
*
22110993 TCGCTGTGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAA
129 TCGCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAA
22111058 TTACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAA
194 TTACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAA
22111123 TAATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAA
259 TAATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAA
22111188 TTTTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTT
324 TTTTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTT
22111253 TAGCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAAC
389 TAGCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAAC
22111318 AAAGAAACTTGGTAAAACTTGCGTTGGTTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAA
454 AAAGAAACTTGGTAAAACTTGCGTTGGTTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAA
22111383 GGATTTTGCAGCTT-AAAACATCAGACTTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGC
519 GGATTTTGCAGCTTAAAAACATCAGACTTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGC
22111447 ACGATTATCGCACGATTTTAATTTTTCGCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTT
584 ACGATTATCGCACGATTTTAATTTTTCGCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTT
22111512 TAGGTGCTCTAAGGATTTTGAGGAATTACATATGAGTGATCTTCATATTTGGATATTATTTATGA
649 TAGGTGCTCTAAGGATTTTGAGGAATTACATATGAGTGATCTTCATATTTGGATATTATTTATGA
22111577 AGTTGTTATCGGTGCTTAATGTGAATAATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAG
714 AGTTGTTATCGGTGCTTAATGTGAATAATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAG
22111642 CACTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAA
779 CACTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAA
22111707 GCTTTAAAATATGAAGGCATTGTTTTAGCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAA
844 GCTTTAAAATATGAAGGCATTGTTTTAGCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAA
* * *
22111772 TCCAATGTTTTAAGCTCACTCAAACAAAGAAACTCGGCAAAACTTGCGTTGG
909 TCCAATGTTTTAAACTCACTCAAACAAAGAAACTTGGTAAAACTTGCGTTGG
*
22111824 TTTTCATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
1 TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
22111889 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
66 TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
22111954 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
131 GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
22112019 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
196 ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
22112084 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
261 ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
22112149 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
326 TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
22112214 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
391 GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
22112279 AGAAACTTGGTAAAACTTGCGTTGGTTTTAATAATTTTCGTAGTGTTAAG
456 AGAAACTTGGTAAAACTTGCGTTGGTTTTAATAATTTTCGTAGTGTTAAG
22112329 NNNNNNNNNN
Statistics
Matches: 2372, Mismatches: 22, Indels: 35
0.98 0.01 0.01
Matches are distributed among these distances:
947 27 0.01
948 906 0.38
949 1 0.00
950 1 0.00
958 8 0.00
959 896 0.38
960 533 0.22
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.38
Consensus pattern (960 bp):
TTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGGATTTTGCAGCTTAAAAACATCAGAC
TTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCACGATTATCGCACGATTTTAATTTTTC
GCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTAGGTGCTCTAAGGATTTTGAGGAATT
ACATATGAGTGATCTTCATATTTGGATATTATTTATGAAGTTGTTATCGGTGCTTAATGTGAATA
ATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCACTCGAAGCCTAATGCTTTTGAAATT
TTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGCTTTAAAATATGAAGGCATTGTTTTA
GCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATCCAATGTTTTAAACTCACTCAAACAA
AGAAACTTGGTAAAACTTGCGTTGGTTTTAATAATTTTCGTAGTGTTAAGTGAAAGTTATAAAGG
ATTTTGCAGCTTAAAAACATCAGACTTTGTTTCTGAACAATTCTGGGCATAAAAACCATTCGCAC
GATTATCGCACGATTTTAATTTTTCGCTGCGTTTCATACTTATTTGCTTTTTAGATACATTTTTA
GGTGCTCTAAGGATTTTGAGGAATTACATATGAGTGATCTTCATATTTGGATATTATTTATGAAG
TTGTTATCGGTGCTTAATGTGAATAATTATGTGCTAAACTGTTTTAGCAGTTCACAGGGGGAGCA
CTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTCCTGTGAAAATGATTTTCACTGGAGTCAAGC
TTTAAAATATGAAGGCATTGTTTTAGCAGGTTTTTAAGTGGAAATTAATTTGAATATCTCGAATC
CAATGTTTTAAACTCACTCAAACAAAGAAACTTGGTAAAACTTGCGTTGG
Found at i:22115414 original size:501 final size:498
Alignment explanation
Indices: 22114385--22115496 Score: 1392
Period size: 501 Copynumber: 2.2 Consensus size: 498
22114375 TTATTTGTTC
* * * * *
22114385 ATATCCAAATATCAAGATCCTTCATAAGTAATCCCACAAGTTCCTTAGAGCGCTTAAAAGTGTAT
1 ATATCCAAATATCAAGATCATTCATATGTAATCCCACAAGTTCCTTAGAGCACCTAAAAATGTAT
*
22114450 CTAAAAGCAAATAAGTATGAAACACAATGATAAATTAAAATCATGCAAAAATGGTTTTCAAGTCA
66 CTAAAAGCAAATAAGTATGAAACACAATGAAAAATTAAAATCATGCAAAAATGGTTTTCAAGTCA
* * * * * *
22114515 CAATTTAAAATTGTGCGAATGATTTTTATGCTAGATTTGTTCGAAAATAAAGTCCGGTGTTTTAA
131 CAATTTAAAATTATGCGAATGACTTTTATACTAGAATTGTTCAAAAATAAAGTCCGATGTTTTAA
* ** *
22114580 GCTCAAAAATTCTTTATAACTTACACTTAACGTTGTGAAAAATTAAAAGCAGCGCAAGTTTTACC
196 GCTCAAAAATCCTTTATAACTTACACTTAACACTGTGAAAAATTAAAAGCAACGCAAGTTTTACC
* *
22114645 ATGTTTCCTTGTTTGAGCATGTTTAACACAATGGATTTAAGATATTTAAATTCATTTCCATTTAA
261 ATGTTTCCTTGTTTGAGCATGTTTAACACAATGGATTCAAGATATTCAAATTCATTTCCATTTAA
* * * * * * *
22114710 AACTTGGCAAAACAATGCTTTCATATTGTAAAGTTGAACTTCGGCGAAAATTATTTTTAAAGCAA
326 AACCTGACAAAACAATGCTTTCATATTGTAAAGTCGAACTCCAGCGAAAATCATTTTCAAAGCAA
* ** *
22114775 AACATAAAATTTTAAAAAAATTAGGCTTCGAGCGCTTACCCTATAAACTGCTAAAACAAGTTAGC
391 AACATAAAACTACAAAAAAATTAGGCTTCGAGCACTTACCCTATAAACTGCTAAAACAAGTTAGC
* * * *
22114840 ACATAATTAATCACTTCAAGCACCGATAAAAACTTCACAAATA
456 ACACAATTAATCACATCAAGCACCAATAAAAACTTAACAAATA
* * *
22114883 ATATCCAACTATCAAGATTATTCTTATGTAATCCCACAAGTTCCTTAGAGCACCTAAAAATGTAT
1 ATATCCAAATATCAAGATCATTCATATGTAATCCCACAAGTTCCTTAGAGCACCTAAAAATGTAT
* * * * * * * * *
22114948 CTAAAAGAAAATAAGTGTGAAAGACGATAAAAAATTAAAATCATTCGAAAATGGTTTTTATGTCA
66 CTAAAAGCAAATAAGTATGAAACACAATGAAAAATTAAAATCATGCAAAAATGGTTTTCAAGTCA
* * * * *
22115013 CAATTTGAAATTATGGGAATGGCTTTTATACTCAGAATTGTTCAAAAACT-GAGTCTGATGTTTT
131 CAATTTAAAATTATGCGAATGACTTTTATACT-AGAATTGTTCAAAAA-TAAAGTCCGATGTTTT
* * * * *
22115077 TAGCTCTAAAATCCTTTATAACTTTCAGTTAACACTGTGAAAAATTAAAA-CAAATGCAAGTTTT
194 AAGCTCAAAAATCCTTTATAACTTACACTTAACACTGTGAAAAATTAAAAGC-AACGCAAGTTTT
* * *
22115141 ACCATGTTTCTTTGTTTGA--ATGAGTTTAAGACATTGGATTCAAGATATTCAAATTCATTTCCA
258 ACCATGTTTCCTTGTTTGAGCAT--GTTTAACACAATGGATTCAAGATATTCAAATTCATTTCCA
* *
22115204 TTTAAAAACCT-ACTAAAACAATGCTTTTCATATTTTAGAGCTCG-ACTCCAGCGAAAATCATTT
321 TTT-AAAACCTGAC-AAAACAATGC-TTTCATATTGTAAAG-TCGAACTCCAGCGAAAATCATTT
* * * * *
22115267 TCAAAGCAAAACATAAAACTACAAAAACATTAGGCTTCGAGTAC-TCCCGCTATATATTGCTAAA
382 TCAAAGCAAAACATAAAACTACAAAAAAATTAGGCTTCGAGCACTTACC-CTATAAACTGCTAAA
* ** *
22115331 ACAAGTTATCACACAATTAATCACATCAAGTGCCAATAACAACTTAACAAATA
446 ACAAGTTAGCACACAATTAATCACATCAAGCACCAATAAAAACTTAACAAATA
* * * ***
22115384 ATATCCAAATATCGAGATCATTCATATGTAATTCCTCAACACCCTTAGAGCACCTAAAAATGTAT
1 ATATCCAAATATCAAGATCATTCATATGTAATCCCACAAGTTCCTTAGAGCACCTAAAAATGTAT
* *
22115449 CTAAAAGCAAATAAGTATGAAACACAATGAAAAACTAAAATCGTGCAA
66 CTAAAAGCAAATAAGTATGAAACACAATGAAAAATTAAAATCATGCAA
22115497 TAATTGTGCG
Statistics
Matches: 517, Mismatches: 87, Indels: 17
0.83 0.14 0.03
Matches are distributed among these distances:
497 2 0.00
498 139 0.27
499 135 0.26
500 20 0.04
501 219 0.42
502 2 0.00
ACGTcount: A:0.40, C:0.17, G:0.12, T:0.31
Consensus pattern (498 bp):
ATATCCAAATATCAAGATCATTCATATGTAATCCCACAAGTTCCTTAGAGCACCTAAAAATGTAT
CTAAAAGCAAATAAGTATGAAACACAATGAAAAATTAAAATCATGCAAAAATGGTTTTCAAGTCA
CAATTTAAAATTATGCGAATGACTTTTATACTAGAATTGTTCAAAAATAAAGTCCGATGTTTTAA
GCTCAAAAATCCTTTATAACTTACACTTAACACTGTGAAAAATTAAAAGCAACGCAAGTTTTACC
ATGTTTCCTTGTTTGAGCATGTTTAACACAATGGATTCAAGATATTCAAATTCATTTCCATTTAA
AACCTGACAAAACAATGCTTTCATATTGTAAAGTCGAACTCCAGCGAAAATCATTTTCAAAGCAA
AACATAAAACTACAAAAAAATTAGGCTTCGAGCACTTACCCTATAAACTGCTAAAACAAGTTAGC
ACACAATTAATCACATCAAGCACCAATAAAAACTTAACAAATA
Found at i:22116083 original size:477 final size:476
Alignment explanation
Indices: 22114523--22122200 Score: 8518
Period size: 476 Copynumber: 15.8 Consensus size: 476
22114513 CACAATTTAA
* * * * * * *
22114523 AATTGTGCGAATGATTTTTATG-CTAGATTTGTTC-GAAAATAAAGTCCGGTGTTTTAAGCTCAA
1 AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAG-AAACAAAGTCTGATGTTTTAAGCTCCA
* ** * * ** *
22114586 AAATTCTTTATAACTTACACTTAACGTTGTGAAAAATTAAAAGCAGCGCAAGTTTTACCATGTTT
65 AAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGTTT
* * * * * * *
22114651 CCTTGTTTGAGCATGTTTAACACAATGGATTTAAGATATTTAAATTCATTTCCATTT-AAAACTT
130 CTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT
* * * * * *
22114715 GGC-AAAACAATGCTTTCATATTGTAAAG-TTGAACTTCGGCGAAAATTATTTTTAAAGCAAAAC
195 -GCTAAAACAATGCTTTCATATTTTAAAGCTTG-ACTCCAGTGAAAATCATTTTCAAAGCAAAAC
* ** * * *
22114778 ATAAAATTTTAAAAAAATTAGGCTTCGAGCGCTTACCC-TATAAACTGCTAAAACAAGTTAGCAC
258 ATAAAATTTCAAAAGCATTAGGCTTCGAGTGC-TCCCCTTATAAACTGCTAAAACAATTTAGCAC
* * * * * * * *
22114842 ATAATTAATCACTTCAAGCACCGATAAAAACTTCACAAATAATATCCAACTATCAAGATTATTCT
322 ACAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGAAGATCATTCA
* * * *
22114907 TATGTAATCCCACAAGTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTGTGAAAGA
387 TATGTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATG-AA-A
* * *
22114972 CGATAAAAAATTAAAATCATTCGAAAATGGTTTTTATGTCACAATTT
450 C-----ACAATGAAAA--ATT--AAAATCG------TG---CAA--T
* * * * * * ** * *
22115019 GAAATTATGGGAATGGCTTTTATACTCAGAATTGTTCAAAAACTGAGTCTGATGTTTTTAGCTCT
1 --AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCC
* * * * *
22115084 AAAATCCTTTATAACTTTCAGTTAACACTGTGAAAAATTAAAACAAATGCAAGTTTTACCATGTT
64 AAAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGTT
*** *
22115149 TCTTTGTTTGAATGAGTTTAAGACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACC
129 TCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACC
* * * *
22115214 TACTAAAACAATGCTTTTCATATTTTAGAGCTCGACTCCAGCGAAAATCATTTTCAAAGCAAAAC
194 TGCTAAAACAATGC-TTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAAC
* * * * * * * *
22115279 ATAAAACTACAAAAACATTAGGCTTCGAGTACTCCCGC-TATATATTGCTAAAACAAGTTATCAC
258 ATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCC-CTTATAAACTGCTAAAACAATTTAGCAC
** *
22115343 ACAATTAATCACATCAAGTGCCAATAACAACTTAACAAATAATATCCAAATATCG-AGATCATTC
322 ACAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATAT-GAAGATCATTC
** *
22115407 ATATGTAATTCCTCAACACCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAAC
386 ATATGTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAAC
*
22115472 ACAATGAAAAACTAAAATCGTGCAAT
451 ACAATGAAAAATTAAAATCGTGCAAT
* *
22115498 AATTGTGCGAATGGTTTTTATGCCCATAATTGTTCAGAAACAAAGTTTGATGTTTTAAGCTCCAA
1 AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCAA
* * *
22115563 AATCCTTTATAACTTTCA-TGTAACACTATGAAAAATTAAAACCAATGCAAATTTTATCATGCTT
66 AATCCTTTATAACTTACACT-TAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGTTT
* * *
22115627 CTTTGTTTGAGCAAGTTTAAAACATTGGAATAAAGATATTCAAATTCATTTTCATTTAAAAACCT
130 CTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT
* * * *
22115692 ACTAAAAGCATTGCTTTCATATTCTAAAGCTTTACTCCAGTGAAAATCATTTTCAAAGCAAAACA
195 GCTAAAA-CAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAACA
* * * *
22115757 TAAAATTTTAAAAGCATTAAGCTTCGAGTACTCCCCTTATAAACTGCTAAAATAATTTAGCACAC
259 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACAC
* * * *
22115822 AATTAATCACATCAAGCACCAAT-ACAACTTCCCAAATAGTATCCAAATATGAAGGTCATCCATA
324 AATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGAAGATCATTCATA
* ** * *
22115886 TGTAATTCCTCAACTTCCTTAAAGTTCCCAAAAATGTATCTAAAA-AAAATTAAGTATGAAATAC
389 TGTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAA-TAAGTATGAAACAC
*
22115950 AATGAAAAATTAAAATCGTCCAAT
453 AATGAAAAATTAAAATCGTGCAAT
** * * * * *
22115974 AATTGTGCGAATTTTTTTTATGCCAAAAATTGTTCAAAAACAAAGTATGATGTTTTAAGCTTCAA
1 AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCAA
* *
22116039 AATACTTTATAACTTACACCTAACACTATGAAAAATTAAAAACCAATGCAAGTTTTAT-ATGTTT
66 AATCCTTTATAACTTACACTTAACACTATGAAAAATT-AAAACCAATGCAAGTTTTATCATGTTT
* * * * *
22116103 CTTTGTTTGAACGAGTTTAAAACATTGGATTCTAGATTTTCAAATTCATTTTCATTTAAAAACCT
130 CTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT
* * *
22116168 GCTAAAACAATGCTTTTCATATTCTAAAGCTCGACTCCAGTGAAAATCATTTTCACAGCAAAACA
195 GCTAAAACAATGC-TTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAACA
* * * * * *
22116233 TAAAACTACAAAAACATTAGGCTTCGAGTGCTCCCGC-TATATACTTCTAAAACAAGTTAGCACA
259 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCC-CTTATAAACTGCTAAAACAATTTAGCACA
** *
22116297 CAATTAATCACATCAAGCGTCAATAACAACTTCACAAATAATATCCAAATATCG-AGATCATTCT
323 CAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATAT-GAAGATCATTCA
* * *
22116361 TATGTAATTCCTCAACATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATTAAACA
387 TATGTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACA
* *
22116426 TAACGAAAAATTAAAATCGTGCAAT
452 CAATGAAAAATTAAAATCGTGCAAT
*
22116451 AATTGTGCGAATGGTTTTTATGCCCATAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCAA
1 AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCAA
* * * * * *
22116516 TATCCTTTTATAACTTACACGTAACGCTATGAAAAATTAAAACTAATGCAAATTTTATCATGCTT
66 AATCC-TTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGTTT
* * *
22116581 CTTTATTTAAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACTT
130 CTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT
* * *
22116646 TCTAAAAGCATTGCTTTCATATTTTAAAGCTTAACTCCAGTGAAAATCATTTTCAAAGCAAATA-
195 GCTAAAA-CAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAA-AC
* * * ***
22116710 AAAAAATTTCAAAAGCATTTGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAAGAATTTAGCGTG
258 ATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACA
* * * * *
22116775 CAATTAATCACATCAAGCACCGAT-ACAACTTCCCAAATAGTATCCAAATATGAAGGTCATCCAT
323 CAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGAAGATCATTCAT
* * * * * *
22116839 ATGTAATTCCTCAAC-TGCATAGAGAACCCAAATATGTATCTAAAAGAAAATAAGTATGAAACAT
388 ATGTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACAC
*
22116903 AAAGAAAAATTAAAATCGTGCAAT
453 AATGAAAAATTAAAATCGTGCAAT
* * *
22116927 AATTGTGCGAATGGTTTTTATGCCCAAAAATTGTTCAGAAACAAAGTCTGATGTCTTAAGTTCCA
1 AATTGTGCGAATGGTTTTTATGCCC-AGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCA
*
22116992 AAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTAT-ATATTT
65 AAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGTTT
* * * * *
22117056 CTTTGTTTGAGCAAGTTTAAAACATTGTATTCAAGATTTTCAAATTTATTTCTATTTAAAAACTT
130 CTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT
* * * *
22117121 GCTAAAACAATGCTTTCTTATTTTAAAGCTGTG-CTCTAGTGAAAATCATTTTTAAAGTAAAACA
195 GCTAAAACAATGCTTTCATATTTTAAAGCT-TGACTCCAGTGAAAATCATTTTCAAAGCAAAACA
* *
22117185 TAAAATTTCAAAAGCATTAGGCTTCGAGTCCTCCCCTTATAAACTGCTAAGACAATTTAGCACAC
259 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACAC
* * * * *
22117250 AATTAATCATATCAAGCACCAATAACAACTTGACTAATAATATCCAAATATCAAGATCCTTCATA
324 AATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGAAGATCATTCATA
* * * * * * *
22117315 AGTAATCCCACAAGTTCCTTAGAGCACCTAAAAGTGTATCTAAAAGCAAATAAGCATGAAACACA
389 TGTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACAC-
* *
22117380 ATTATAAATTAAAATCATGCAAAAATGGTTTTTAAGTCACAATTT
453 A--AT-GA--AAAAT--T---AAAATCG----T--G---CAA--T
* * * * *
22117425 GAAATTGTGCGAATGGTTTTTACG-CTAGATTTGTT-TGAAAACAAAGACTGAT-TGTTTAAGCT
1 --AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAG-AAACAAAGTCTGATGT-TTTAAGCT
* * * * * ** *
22117487 CCAAAATTCTTTATAACTTACACTTAACATTGTCAAAAATTAAAAGCAGCGCAAGTTTTACCATG
62 CCAAAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATG
* *
22117552 TTTCTTTGTTTGAGCATGTTTAACACATTGGA-TCTAAGATATTCAAATTCATTTCCATTTAAAA
127 TTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTC-AAGATATTCAAATTCATTTCCATTTAAAA
* * * * *
22117616 ACCTGGC-AAAACAATGCTTTCATATTTTAAAGCTGGACTCTAGCGAAAATTATTTTTAAAGCAA
191 ACCT-GCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAA
* ** ** * * *
22117680 AACATAAAATTTTAAAAAAATTAGGCTTCGAACGCTTGCCC-TATAAACTGCTAAAGCAAGTTAG
255 AACATAAAATTTCAAAAGCATTAGGCTTCGAGTGC-TCCCCTTATAAACTGCTAAAACAATTTAG
* * * *
22117744 CACACAATTAATCACATCAAGCACCAATAAAAACTTCACAAACAATATCCAACTATCAAGATCAT
319 CACACAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGAAGATCAT
* * * * *
22117809 TCTTATGTAATCCCACAACTTCCTTAGAACACCTAAAAATGTATCTAAAAGAAAATAAGTGTGAA
384 TCATATGTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAA
* * *
22117874 AGATAATAAAAAATTAAAATCATGTGAAAATGGTTTTTATGTCAAAATTT
449 ACACAATGAAAAATTAAAATC-----------G------TG-C--AA--T
* * * * * *
22117924 GAAATTCTGGGAATGGCTTTTATGCCCAGAATTGTTCAAAAACTAAGTC-GATGTTTTAAGCTCT
1 --AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCC
* * * * * *
22117988 AAAATCCTTTATATCTTTCAGTTAACACTATGAAAAATTAGAACAAATGCAAGTTTTACCATGTT
64 AAAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGTT
** * *
22118053 TCTTCATTTGAACAAGTTTAAGACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACC
129 TCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACC
* * * *
22118118 TACTAAAAGCATTGCTTTCATATTCTAAAGCTTGACTCCAGTGAAAATTATTTTCAAAGCAAAAC
194 TGCTAAAA-CAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAAC
* *
22118183 ATAAAATTTCAAAAGCATTAGGCTTCAAGTGCTCCCCTTATAAACTGCGAAAACAATTTAGCACA
258 ATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACA
* * * * * * *
22118248 CAATTAATCGCATAAAGCACTAAT-ACAACTTCACAAATAGTATCCGAATATGAAGGTCATCCAT
323 CAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGAAGATCATTCAT
* *
22118312 ATGTAATTCCTCAACTTCCTTAAAGCACCCAAAAATGTATCTAAAA-AAAAGTAAGTATGAAACA
388 ATGTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAA-TAAGTATGAAACA
**
22118376 CAACAAAAAATTAAAATCGTGCAAT
452 CAATGAAAAATTAAAATCGTGCAAT
* * * * *
22118401 AATTATGCGAATGGTTTTTATGCCCAAAATTGTTCAGAAACAAAGTCTGACGTCTTAAGCTCTAA
1 AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCAA
22118466 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTAT-ATGTTTC
66 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGTTTC
* *
22118530 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATTTTCAAATTCATTTCCATTTAAAAACCTA
131 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTG
*
22118595 CTAAAACAATGCTTTCTTATTTTAAAGCTATG-CTCCAGTGAAAATCATTTTCAAAGCAAAACAT
196 CTAAAACAATGCTTTCATATTTTAAAGCT-TGACTCCAGTGAAAATCATTTTCAAAGCAAAACAT
* * * *
22118659 AAAATTTCAGAAGCATTAGGCTTTGAGTGGTCCCCTTATAAACTACTAAAACAATTTAGCACACA
260 AAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACACA
* * *
22118724 ATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCCTTCATAA
325 ATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGAAGATCATTCATAT
* * * * *
22118789 GTAATCCCACAAGTTCCTTAGAGCACCTAAAAGTGTATCTAAAAGCAAATAAGTATGAAACACAA
390 GTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAA
*
22118854 TGATAAATTAAAATCATGCAAAATGATTTTTAAGTCACAATTT
455 TGAAAAATT-AAA--AT-C-----G-----T--G---CAA--T
* *
22118897 GAAATTGTGCGAATGGTTTTTATG-CCAGATTTGTT-TGAAAACAAAGTCTGAT-TTTTAAAGCT
1 --AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAG-AAACAAAGTCTGATGTTTT-AAGCT
* * * * * * * *
22118959 CCAAAATTCTTTATAACTTACATTTAACGCTATCAAAAATTAAAAGCAGTGCAAATTTTACCATG
62 CCAAAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATG
* * * * *
22119024 TTTATTTGTTTGAGCATGTTTAACACATTGGATTTAAGATATTCAAATTCATTTTCATTTAAAAA
127 TTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAA
* * * * *
22119089 CCTGAC-AAGACAATGCTTTCATATTTTAAAG-TTGGACTCTAGCGAAAATTATTTTTAAAGCAA
192 CCTG-CTAAAACAATGCTTTCATATTTTAAAGCTT-GACTCCAGTGAAAATCATTTTCAAAGCAA
* * ** * * * * **
22119152 AACATGAAATTTTAAAAAAATTAGGCTTCGAGTGTTTACCC-TATAAACTACTAAAGCAGGTTAG
255 AACATAAAATTTCAAAAGCATTAGGCTTCGAGTG-CTCCCCTTATAAACTGCTAAAACAATTTAG
* * * *
22119216 CACATAATTAATCACATCAAGCACCAATAAAAACTTCACAAATAATATCCAACTATCAAGATCAT
319 CACACAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGAAGATCAT
* * * * * * *
22119281 TCTTATGTAATCCCACAATTTCCTTAGAGCACCGAAAAGTGTATCTAAAAGAAAATAAGTGTGAA
384 TCATATGTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAA
* * *
22119346 AGACCATAAAAAATTAAAATCATGCAAAAATGGTTTTTATGTCACAATTT
449 ACACAATGAAAAATT-AAA--AT-C-------G------TG---CAA--T
* * * * * * *
22119396 GAAATTATGGGAATGGCTTTTATGCCCAGAATTGTTCAAAAACTAAGTTTGATGTTTTAAGCTCT
1 --AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCC
* * * * *
22119461 AAAATCCTTTATAACTTTCAGTTAACAATATGAAAAATTAAAACAAATGCAAGTTTTACCATGTT
64 AAAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGTT
* * *
22119526 TCTTTGTTTGAACAAGTTTAAGACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACT
129 TCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACC
* *
22119591 TGCTAAAACAAAGCTTTTCATATTTTAAAGCTTGACTCCAGCGAAAATCATTTTCAAAGCAAAAC
194 TGCTAAAACAATGC-TTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAAC
* * * * * * * * *
22119656 ATAAAACTACAAAAACGTTAGGCTTCGAGTGCTCCCCCTATATACTACTAAAACAAGTTAGCAAA
258 ATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACA
* *
22119721 CAATTAATCACATCAAGCGCAAATAACAACTTCACAAATAATATCCAAATATCG-AGATCATTCA
323 CAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATAT-GAAGATCATTCA
* *
22119785 TATGTAATTCCTCAA-TATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATTAAAC
387 TATGTAATTCCTCAACT-TCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAAC
22119849 ACAATGAAAAATTAAAATCGTGCAAT
451 ACAATGAAAAATTAAAATCGTGCAAT
* *
22119875 AATTGTGCGAATGGTTTTTGTGCCCAGAATTGCTCAGAAACAAAGTCTGATGTTTTAAGCTCCAA
1 AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCAA
* * * * * *
22119940 AATCCTTTATAACTTACACGTAACACTATGAAAAATTAAAACTAACGCAAATTTTATAATGCTTC
66 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGTTTC
** *
22120005 TTTGTTTGAGCGGGTTTAAAACATTGGATTTAAGATATTCAAATTCATTTCCATTTAAAAACCTG
131 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTG
* * * *
22120070 TTAAAAGCATTGCTTTCGTATTCTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAACAT
196 CTAAAA-CAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAACAT
* *
22120135 AAAATTTCAAAAGCATTAGGCTTCGAGTGCTCTCCTTATAAATTGCTAAAACAATTTAGCACACA
260 AAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACACA
* * * * * * *
22120200 ATTAATCACATAAATCACCAAT-ACAACTTCCCAAATAGTAGCCAAATATGAAGGTCATCCATAT
325 ATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGAAGATCATTCATAT
*
22120264 GTAATTCCTCAACTTCCTTAGAGCACCCAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAA
390 GTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAA
**
22120329 CAAAAAATTAAAATCGTGCAAT
455 TGAAAAATTAAAATCGTGCAAT
* * *
22120351 AATTGTGCGAATGGTTTTTATGCCCAAAATTGTTCAAAAACAAAGTCTGATGTCTTAAGCTCCAA
1 AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCAA
* *
22120416 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAATCAACGCAAGTTTTAT-ATGTTTC
66 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGTTTC
* *
22120480 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATTTTCAAATTCATTTCCATTTAAAAACTTG
131 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTG
* * *
22120545 CTAAAACAATGATTTCTTATTTTAAAACTGTG-CTCC-GATGAAAATCATTTTCAAAGCAAAACA
196 CTAAAACAATGCTTTCATATTTTAAAGCT-TGACTCCAG-TGAAAATCATTTTCAAAGCAAAACA
* *
22120608 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTTCCCTTATAAACTGCTAAAATAATTTAGCACAC
259 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACAC
* * * *
22120673 AATTAATCACATCAAGCACCAATAACAACTTCATAAATAAAATCCAAATATCAAGATCTTTCATA
324 AATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGAAGATCATTCATA
* * * * * * * *
22120738 AGTAATCCCACAAGTTCCTTAGAGTACCTAAAAGTGTATCTAAAAGCAAATAAGCATGAAACACT
389 TGTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACAC-
* *
22120803 ATTATAAATTAAAATCATGCAAAAATGGTTTTTAAGTCACAATTT
453 A--AT-GA--AAAAT--T---AAAATCG----T--G---CAA--T
**
22120848 GAAATTGTGCGAATGGTTTTTATG-CCAGCTTTGTTC-GAAAACAAAGTCTGATGTTTTAAGCTC
1 --AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAG-AAACAAAGTCTGATGTTTTAAGCTC
* * * * * *
22120911 CAAAATTCTTTATAACTTACACTTAACGCTGTGAAAAATTAAAAGCAATGTAAGTTTTACCATGT
63 CAAAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGT
* * * * *
22120976 TTCTTTGTTTGAGCATGTTTAACACATTAGATTTAAGATATTCAAATTCATTTCCATTTAGAAAC
128 TTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAAC
* * * * *
22121041 CTGGC-AAAACAATGCTTTCATATTTTAAACCTGGACTCCAGCGAAAATTATTTTTAAAGCAAAA
193 CT-GCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAA
* * ** * * * *
22121105 GATAAAATTTTAAAAAAATTAGGCTTCGAGCT-CTTACCC-TATAAACTGCTAGAGCAAGTTAGC
257 CATAAAATTTCAAAAGCATTAGGCTTCGAG-TGC-TCCCCTTATAAACTGCTAAAACAATTTAGC
* * * * *
22121168 ACACAATTAAGCACATCAAGCACCAATAAAAACTTCACAAATAATATTCAACTATCAAGATCATT
320 ACACAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGAAGATCATT
* * *
22121233 CTTATGTAATGCCAT-AACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTGTGAA
385 CATATGTAATTCC-TCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAA
*
22121297 AGACAAT-AAAAATTTAAAATCGTGCGAA-
449 ACACAATGAAAAA-TTAAAATCGTGC-AAT
22121325 AATTGTTTTTATGTCACAATTTGAAATTCTGGGAATGGCTTTTATGCCCAGAATTGTTCAGAAAC
1 AATTG------TG---C-----G-AA---T-GG--T---TTTTATGCCCAGAATTGTTCAGAAAC
* * * * * * * *
22121390 TAAGTCTGATGTTTTAAGCTCTATAATCATTTATAACTTTCATTTAACATTGTGAAAAATTAAAA
42 AAAGTCTGATGTTTTAAGCTCCAAAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAA
* * * *
22121455 CAAATGCAAGTTTTACCATGTTTCTTTGTTTGAACAAGTTTAAGACATTGGATTCAAGATATTCA
107 CCAATGCAAGTTTTATCATGTTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCA
* * *
22121520 AATTCATTTCCATTTTAAAACTTGCTAAAACAATGCTTTTCATATTTTAAAGCTTGACTCCAATG
172 AATTCATTTCCATTTAAAAACCTGCTAAAACAATGC-TTTCATATTTTAAAGCTTGACTCCAGTG
* * *
22121585 AAAATCATTTTCAAAGCAAAACATAAAACTACAAAAACATTAGGCTTCGAGTGCTCCCAC-TATA
236 AAAATCATTTTCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCC-CTTATA
* * * *
22121649 TACTGCTAAAACAAGTTAGCACACAATTAATCACATCAAGCGCCAGTAACAACTTCACAAATAAT
300 AACTGCTAAAACAATTTAGCACACAATTAATCACATCAAGCACCAATAACAACTTCACAAATAAT
* * *
22121714 ATCCAAATATCG-AGATCATTCAAATGTAATTCCTCAACATCCTTATAGCACCTAAAAATGTATC
365 ATCCAAATAT-GAAGATCATTCATATGTAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATC
* * *
22121778 TAAAAGGAAATAAGTATGAAACACAACGAAAAATTAAAATCATGCAAT
429 TAAAAGAAAATAAGTATGAAACACAATGAAAAATTAAAATCGTGCAAT
*
22121826 AATTGTAG-GAAT-GTTTTTATGCTCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCA
1 AATTGT-GCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCA
* * *
22121889 AAATCCTTTATAACTTACACGTAACACTATGAAAAATTAAAACCAATGCAAATTTTATCATGCTT
65 AAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGTTT
22121954 CTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT
130 CTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT
* * *
22122019 ACTAAAAGCATTGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATTATTTTCAAAGCAAAACA
195 GCTAAAA-CAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAACA
22122084 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACAC
259 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACAC
* * * * *
22122149 AATTAATCATATTAAGCACCAAT-ACAATTTCCCAAATAGTATCCAAATATGA
324 AATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGA
22122201 CTGATTCTAC
Statistics
Matches: 6139, Mismatches: 832, Indels: 441
0.83 0.11 0.06
Matches are distributed among these distances:
473 2 0.00
474 384 0.06
475 524 0.09
476 1166 0.19
477 895 0.15
478 230 0.04
479 16 0.00
480 3 0.00
481 15 0.00
482 8 0.00
483 2 0.00
484 8 0.00
486 8 0.00
487 7 0.00
488 12 0.00
489 2 0.00
490 10 0.00
491 4 0.00
492 7 0.00
493 8 0.00
494 14 0.00
495 6 0.00
496 15 0.00
497 86 0.01
498 517 0.08
499 1011 0.16
500 524 0.09
501 646 0.11
502 9 0.00
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (476 bp):
AATTGTGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCAA
AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTATCATGTTTC
TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTG
CTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAACATA
AAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACACAA
TTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATGAAGATCATTCATATG
TAATTCCTCAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAAT
GAAAAATTAAAATCGTGCAAT
Found at i:22118000 original size:499 final size:497
Alignment explanation
Indices: 22116927--22118399 Score: 1849
Period size: 499 Copynumber: 2.9 Consensus size: 497
22116917 ATCGTGCAAT
* * * * *
22116927 AATTGTGCGAATGGTTTTTATGCCCAAAAATTGTTCAGAAACAAAGTCTGATGTCTTAAGTTCCA
1 AATTCTGCGAATGGTTTTTATGCCC-AGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCCA
* *
22116992 AAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTA-TATATTT
65 AAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAA-CAATGCAAGTTTTACCATGTTT
* * * * *
22117056 CTTTGTTTGAGCAAGTTTAAAACATTGTATTCAAGATTTTCAAATTTATTTCTATTTAAAAACTT
129 CTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT
* * *
22117121 GCTAAAACAATGCTTTCTTATTTTAAAGCTGTG-CTCTAGTGAAAATCATTTTTAAAGTAAAACA
194 GCTAAAACAATGCTTTCATATTTTAAAGCTG-GACTCTAGTGAAAATTATTTTTAAAGCAAAACA
22117185 TAAAATTTCAAAAGCATTAGGCTTCG-AGTCCTCCCCTTATAAACTGCT-AAGACAATTTAGCAC
258 TAAAATTTCAAAAGCATTAGGCTTCGAAG--CTCCCCTTATAAACTGCTAAAG-CAATTTAGCAC
* * * *
22117248 ACAATTAATCATATCAAGCACCAATAACAACTTGACTAATAATATCCAAATATCAAGATCCTTCA
320 ACAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCC-AATATCAAGATCATTCA
* * * * * *
22117313 TAAGTAATCCCACAAGTTCCTTAGAGCACCTAAAAGTGTATCTAAAAGCAAATAAGCATGAAACA
384 TATGTAATCCCACAACTTCCTTAGAACACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACA
* * *
22117378 CAATTATAAATTAAAATCATGCAAAAATGGTTTTTAAGTCACAATTTGA
449 CAATAAAAAATTAAAATCATGCAAAAATGGTTTTTAAGTCAAAATTTGA
* * * * ** *
22117427 AATTGTGCGAATGGTTTTTACG-CTAGATTTGTTTGAAAACAAAGACTGAT-TGTTTAAGCTCCA
1 AATTCTGCGAATGGTTTTTATGCCCAGAATTGTTCAAAAACAAAGTCTGATGT-TTTAAGCTCCA
* * * * **
22117490 AAATTCTTTATAACTTACACTTAACATTGTCAAAAATTAAAAGCAGCGCAAGTTTTACCATGTTT
65 AAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAA-CAATGCAAGTTTTACCATGTTT
* *
22117555 CTTTGTTTGAGCATGTTTAACACATTGGA-TCTAAGATATTCAAATTCATTTCCATTTAAAAACC
129 CTTTGTTTGAGCAAGTTTAAAACATTGGATTC-AAGATATTCAAATTCATTTCCATTTAAAAACC
*
22117619 TGGC-AAAACAATGCTTTCATATTTTAAAGCTGGACTCTAGCGAAAATTATTTTTAAAGCAAAAC
193 T-GCTAAAACAATGCTTTCATATTTTAAAGCTGGACTCTAGTGAAAATTATTTTTAAAGCAAAAC
* ** * *
22117683 ATAAAATTTTAAAAAAATTAGGCTTCGAACGCTTGCCC-TATAAACTGCTAAAGCAAGTTAGCAC
257 ATAAAATTTCAAAAGCATTAGGCTTCGAA-GC-TCCCCTTATAAACTGCTAAAGCAATTTAGCAC
* * *
22117747 ACAATTAATCACATCAAGCACCAATAAAAACTTCACAAACAATATCCAACTATCAAGATCATTCT
320 ACAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAA-TATCAAGATCATTCA
* *
22117812 TATGTAATCCCACAACTTCCTTAGAACACCTAAAAATGTATCTAAAAGAAAATAAGTGTGAAAGA
384 TATGTAATCCCACAACTTCCTTAGAACACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACA
* ** *
22117877 TAATAAAAAATTAAAATCATGTGAAAATGGTTTTTATGTCAAAATTTGA
449 CAATAAAAAATTAAAATCATGCAAAAATGGTTTTTAAGTCAAAATTTGA
* * * *
22117926 AATTCTGGGAATGGCTTTTATGCCCAGAATTGTTCAAAAACTAAGTC-GATGTTTTAAGCTCTAA
1 AATTCTGCGAATGGTTTTTATGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCCAA
* * * *
22117990 AATCCTTTATATCTTTCAGTTAACACTATGAAAAATTAGAACAAATGCAAGTTTTACCATGTTTC
66 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAAC-AATGCAAGTTTTACCATGTTTC
** * * *
22118055 TTCATTTGAACAAGTTTAAGACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTA
130 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTG
* * * * *
22118120 CTAAAAGCATTGCTTTCATATTCTAAAGCTTGACTCCAGTGAAAATTATTTTCAAAGCAAAACAT
195 CTAAAA-CAATGCTTTCATATTTTAAAGCTGGACTCTAGTGAAAATTATTTTTAAAGCAAAACAT
* *
22118185 AAAATTTCAAAAGCATTAGGCTTC-AAGTGCTCCCCTTATAAACTGCGAAAACAATTTAGCACAC
259 AAAATTTCAAAAGCATTAGGCTTCGAA--GCTCCCCTTATAAACTGCTAAAGCAATTTAGCACAC
* * * * * * *
22118249 AATTAATCGCATAAAGCACTAAT-ACAACTTCACAAATAGTATCCGAATATGAAGGTCATCCATA
322 AATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCC-AATATCAAGATCATTCATA
* * *
22118313 TGTAATTCCTCAACTTCCTTA-AAGCACCCAAAAATGTATCTAAAA-AAAAGTAAGTATGAAACA
386 TGTAATCCCACAACTTCCTTAGAA-CACCTAAAAATGTATCTAAAAGAAAA-TAAGTATGAAACA
* *
22118376 CAACAAAAAATTAAAATCGTGCAA
449 CAATAAAAAATTAAAATCATGCAA
22118400 TAATTATGCG
Statistics
Matches: 834, Mismatches: 118, Indels: 43
0.84 0.12 0.04
Matches are distributed among these distances:
497 1 0.00
498 92 0.11
499 566 0.68
500 174 0.21
501 1 0.00
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (497 bp):
AATTCTGCGAATGGTTTTTATGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCCAA
AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACAATGCAAGTTTTACCATGTTTCT
TTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTGC
TAAAACAATGCTTTCATATTTTAAAGCTGGACTCTAGTGAAAATTATTTTTAAAGCAAAACATAA
AATTTCAAAAGCATTAGGCTTCGAAGCTCCCCTTATAAACTGCTAAAGCAATTTAGCACACAATT
AATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAATATCAAGATCATTCATATGTAA
TCCCACAACTTCCTTAGAACACCTAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAATAAA
AAATTAAAATCATGCAAAAATGGTTTTTAAGTCAAAATTTGA
Found at i:22118841 original size:974 final size:971
Alignment explanation
Indices: 22114523--22122198 Score: 8456
Period size: 953 Copynumber: 7.9 Consensus size: 971
22114513 CACAATTTAA
* * * * * * * * *
22114523 AATTGTGCGAATGATTTTTATG-CTAGATTTGTTC-GAAAATAAAGTCCGGTGTTTTAAGCTCAA
1 AATTATGCGAATGGTTTTTATGCCCAGAATTGTTCAG-AAACAAAGTCTGATGTCTTAAGCTCTA
* ** * * **
22114586 AAATTCTTTATAACTTACACTTAACGTTGTGAAAAATTAAAAGCAGCGCAAGTTTTACCATGTTT
65 AAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTACCATGTTT
* * * * * *
22114651 CCTTGTTTGAGCATGTTTAACACAATGGATTTAAGATATTTAAATTCATTTCCATTT-AAAACTT
130 CTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACTT
* * * * * *
22114715 GGC-AAAACAATGCTTTCATATTGTAAAG-TTGAACTTCGGCGAAAATTATTTTTAAAGCAAAAC
195 -GCTAAAACAATGCTTTCATATTTTAAAGCTTG-ACTCCAGTGAAAATCATTTTCAAAGCAAAAC
* * * *
22114778 ATAAAATTTTAAAAAAATTAGGCTTCGAGCGCTTACCCTATAAACTGCTAAAACAAGTTAGCACA
258 ATAAAATTTCAAAAACATTAGGCTTCGAGTGC-TCCCCTATAAACTGCTAAAACAAGTTAGCACA
* * * * * * *
22114843 TAATTAATCACTTCAAGCACCGATAAAAACTTCACAAATAATATCCAACTATCAAGATTATTCTT
322 CAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCAT
* * * * * *
22114908 ATGTAATCCCACAAGTTCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTGTGAAAGAC
387 AAGTAATCCCACAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACAT
* * * *
22114973 GATAAAAAATTAAAATCATTCGAAAATGGTTTTTATGTCACAATTTGAAATTATGGGAATGGCTT
452 AATAAAAAATTAAAATCA-T-GAAAATGGTTTTTATGTCA-AATTTGAAATTGTGCGAATGGTTT
* * ** * * *
22115038 TTATACTCAGAATTGTTCAAAAACTGAGTCTGATGTTTTTAGCTCTAAAATCCTTTATAACTTTC
514 TTATGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCCAAAATCCTTTATAACTTAC
* * ***
22115103 AGTTAACACTGTGAAAAATTAAAACAAATGCAAGTTTTACCATGTTTCTTTGTTTGAATGAGTTT
579 AGTTAACACTATGAAAAATTAAAAC-AATGCAAATTTTACCATGTTTCTTTGTTTGAGCAAGTTT
*
22115168 AAGACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTACTAAAACAATGCTTTTC
643 AAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTACTAAAACAATGC-TTTC
* * * * * * *
22115233 ATATTTTAGAGCTCGACTCCAGCGAAAATCATTTTCAAAGCAAAACATAAAACTACAAAAACATT
707 ATATTTTAAAGCTTGACTCCAGTGAAAATTATTTTCAAAGCAAAACATAAAATTTCAAAAGCATT
* * * * * *
22115298 AGGCTTCGAGTACTCCCGC-TATATATTGCTAAAACAAGTTATCACACAATTAATCACATCAAGT
772 AGGCTTCGAGTGCTCCC-CTTATAAACTGCTAAAACAATTTAGCACACAATTAATCACATCAAGC
* * * * **
22115362 GCCAATAACAACTTAACAAATAATATCCAAATATCGAGATCATTCATATGTAATTCCTCAACACC
836 ACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATATGTAATCCCTCAACTTC
* * ** *
22115427 CTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACACAATGAAAAACTAAAATCG
901 CTTAGAGCACCCAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAAAAAAAAATTAAAATCG
22115492 TGCAAT
966 TGCAAT
* * * * *
22115498 AATTGTGCGAATGGTTTTTATGCCCATAATTGTTCAGAAACAAAGTTTGATGTTTTAAGCTCCAA
1 AATTATGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTCTTAAGCTCTAA
* * * *
22115563 AATCCTTTATAACTTTCA-TGTAACACTATGAAAAATTAAAACCAATGCAAATTTTATCATGCTT
66 AATCCTTTATAACTTACACT-TAACACTATGAAAAATTAAAACCAATGCAAGTTTTACCATGTTT
* * * *
22115627 CTTTGTTTGAGCAAGTTTAAAACATTGGAATAAAGATATTCAAATTCATTTTCATTTAAAAACCT
130 CTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACTT
* * * *
22115692 ACTAAAAGCATTGCTTTCATATTCTAAAGCTTTACTCCAGTGAAAATCATTTTCAAAGCAAAACA
195 GCTAAAA-CAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAACA
* * * * * *
22115757 TAAAATTTTAAAAGCATTAAGCTTCGAGTACTCCCCTTATAAACTGCTAAAATAATTTAGCACAC
259 TAAAATTTCAAAAACATTAGGCTTCGAGTGCTCCCC-TATAAACTGCTAAAACAAGTTAGCACAC
* * * * *
22115822 AATTAATCACATCAAGCACCAAT-ACAACTTCCCAAATAGTATCCAAATATGAAGGTCATCCATA
323 AATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATA
* * * * ** * * * *
22115886 TGTAATTCCTCAACTTCCTTAAAGTTCCCAAAAATGTATCTAAAA-AAAATTAAGTATGAAATAC
388 AGTAATCCCACAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAA-TAAGTATGAAACAT
* * **
22115950 AATGAAAAATTAAAATC-----------------GTCCAA--T--AATTGTGCGAATTTTTTTTA
452 AATAAAAAATTAAAATCATGAAAATGGTTTTTATGTCAAATTTGAAATTGTGCGAATGGTTTTTA
* * * * * **
22115994 TGCCAAAAATTGTTCAAAAACAAAGTATGATGTTTTAAGCTTCAAAATACTTTATAACTTACACC
517 TGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCCAAAATCCTTTATAACTTACAGT
* * * *
22116059 TAACACTATGAAAAATTAAAAACCAATGCAAGTTTTA-TATGTTTCTTTGTTTGAACGAGTTTAA
582 TAACACTATGAAAAATT-AAAA-CAATGCAAATTTTACCATGTTTCTTTGTTTGAGCAAGTTTAA
* * * *
22116123 AACATTGGATTCTAGATTTTCAAATTCATTTTCATTTAAAAACCTGCTAAAACAATGCTTTTCAT
645 AACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTACTAAAACAATGC-TTTCAT
* * * * * * *
22116188 ATTCTAAAGCTCGACTCCAGTGAAAATCATTTTCACAGCAAAACATAAAACTACAAAAACATTAG
709 ATTTTAAAGCTTGACTCCAGTGAAAATTATTTTCAAAGCAAAACATAAAATTTCAAAAGCATTAG
* * * **
22116253 GCTTCGAGTGCTCCCGC-TATATACTTCTAAAACAAGTTAGCACACAATTAATCACATCAAGCGT
774 GCTTCGAGTGCTCCC-CTTATAAACTGCTAAAACAATTTAGCACACAATTAATCACATCAAGCAC
* * * *
22116317 CAATAACAACTTCACAAATAATATCCAAATATCGAGATCATTCTTATGTAATTCCTCAACATCCT
838 CAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATATGTAATCCCTCAACTTCCT
* * * * **
22116382 TAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATTAAACATAACGAAAAATTAAAATCGTG
903 TAGAGCACCCAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAAAAAAAAATTAAAATCGTG
22116447 CAAT
968 CAAT
* * * *
22116451 AATTGTGCGAATGGTTTTTATGCCCATAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCTCCAA
1 AATTATGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTCTTAAGCTCTAA
* * * * * * *
22116516 TATCCTTTTATAACTTACACGTAACGCTATGAAAAATTAAAACTAATGCAAATTTTATCATGCTT
66 AATCC-TTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTACCATGTTT
* *
22116581 CTTTATTTAAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACTT
130 CTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACTT
* * *
22116646 TCTAAAAGCATTGCTTTCATATTTTAAAGCTTAACTCCAGTGAAAATCATTTTCAAAGCAAATA-
195 GCTAAAA-CAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAA-AC
* * * * * ***
22116710 AAAAAATTTCAAAAGCATTTGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAAGAATTTAGCGTG
258 ATAAAATTTCAAAAACATTAGGCTTCGAGTGCTCCCC-TATAAACTGCTAAAACAAGTTAGCACA
* * * * * *
22116775 CAATTAATCACATCAAGCACCGAT-ACAACTTCCCAAATAGTATCCAAATATGAAGGTCATCCAT
322 CAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCAT
* * * * * * * * *
22116839 ATGTAATTCCTCAAC-TGCATAGAGAACCCAAATATGTATCTAAAAGAAAATAAGTATGAAACAT
387 AAGTAATCCCACAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACAT
22116903 AA-AGAAAAATTAAAATC---------G------TG-C-AA--T--AATTGTGCGAATGGTTTTT
452 AATA-AAAAATTAAAATCATGAAAATGGTTTTTATGTCAAATTTGAAATTGTGCGAATGGTTTTT
* * * *
22116946 ATGCCCAAAAATTGTTCAGAAACAAAGTCTGATGTCTTAAGTTCCAAAATCCTTTATAACTTACA
516 ATGCCC-AGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCCAAAATCCTTTATAACTTACA
* * * *
22117011 CTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTA-TATATTTCTTTGTTTGAGCAAGTTTA
580 GTTAACACTATGAAAAATTAAAA-CAATGCAAATTTTACCATGTTTCTTTGTTTGAGCAAGTTTA
* * * * * * *
22117075 AAACATTGTATTCAAGATTTTCAAATTTATTTCTATTTAAAAACTTGCTAAAACAATGCTTTCTT
644 AAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTACTAAAACAATGCTTTCAT
* * * *
22117140 ATTTTAAAGCTGTG-CTCTAGTGAAAATCATTTTTAAAGTAAAACATAAAATTTCAAAAGCATTA
709 ATTTTAAAGCT-TGACTCCAGTGAAAATTATTTTCAAAGCAAAACATAAAATTTCAAAAGCATTA
* * *
22117204 GGCTTCGAGTCCTCCCCTTATAAACTGCTAAGACAATTTAGCACACAATTAATCATATCAAGCAC
773 GGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACACAATTAATCACATCAAGCAC
* * * * * *
22117269 CAATAACAACTTGACTAATAATATCCAAATATCAAGATCCTTCATAAGTAATCCCACAAGTTCCT
838 CAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATATGTAATCCCTCAACTTCCT
* * * *
22117334 TAGAGCACCTAAAAGTGTATCTAAAAGCAAATAAGCATGAAACACAATTATAAATTAAAATCATG
903 TAGAGCACCCAAAAATGTATCTAAAAGAAAATAAGTATGAAACAC-A--A-AAA--AAAAT--T-
*
22117399 CAAAAATGGTTTTTAAGTCACAATTT
959 --AAAATCG----T--G---CAA--T
* * * * * *
22117425 GAAATTGTGCGAATGGTTTTTACG-CTAGATTTGTT-TGAAAACAAAGACTGATTGT-TTAAGCT
1 --AATTATGCGAATGGTTTTTATGCCCAGAATTGTTCAG-AAACAAAGTCTGA-TGTCTTAAGCT
* * * * * * **
22117487 CCAAAATTCTTTATAACTTACACTTAACATTGTCAAAAATTAAAAGCAGCGCAAGTTTTACCATG
62 CTAAAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTACCATG
* *
22117552 TTTCTTTGTTTGAGCATGTTTAACACATTGGA-TCTAAGATATTCAAATTCATTTCCATTTAAAA
127 TTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTC-AAGATATTCAAATTCATTTCCATTTAAAA
* * * * * *
22117616 ACCTGGC-AAAACAATGCTTTCATATTTTAAAGCTGGACTCTAGCGAAAATTATTTTTAAAGCAA
191 A-CTTGCTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAA
* * ** * *
22117680 AACATAAAATTTTAAAAAAATTAGGCTTCGAACGCTTGCCCTATAAACTGCTAAAGCAAGTTAGC
255 AACATAAAATTTCAAAAACATTAGGCTTCGAGTGC-TCCCCTATAAACTGCTAAAACAAGTTAGC
* * *
22117745 ACACAATTAATCACATCAAGCACCAATAAAAACTTCACAAACAATATCCAACTATCAAGATCATT
319 ACACAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATT
* * * * *
22117810 CTTATGTAATCCCACAACTTCCTTAGAACACCTAAAAATGTATCTAAAAGAAAATAAGTGTGAAA
384 CATAAGTAATCCCACAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAA
* * *
22117875 GATAATAAAAAATTAAAATCATGTGAAAATGGTTTTTATGTCAAAATTTGAAATTCTGGGAATGG
449 CATAATAAAAAATTAAAATCA--TGAAAATGGTTTTTATGTC-AAATTTGAAATTGTGCGAATGG
* * * *
22117940 CTTTTATGCCCAGAATTGTTCAAAAACTAAGTC-GATGTTTTAAGCTCTAAAATCCTTTATATCT
511 TTTTTATGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCCAAAATCCTTTATAACT
* * * ** *
22118004 TTCAGTTAACACTATGAAAAATTAGAACAAATGCAAGTTTTACCATGTTTCTTCATTTGAACAAG
576 TACAGTTAACACTATGAAAAATTAAAAC-AATGCAAATTTTACCATGTTTCTTTGTTTGAGCAAG
* *
22118069 TTTAAGACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTACTAAAAGCATTGCT
640 TTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTACTAAAA-CAATGCT
*
22118134 TTCATATTCTAAAGCTTGACTCCAGTGAAAATTATTTTCAAAGCAAAACATAAAATTTCAAAAGC
704 TTCATATTTTAAAGCTTGACTCCAGTGAAAATTATTTTCAAAGCAAAACATAAAATTTCAAAAGC
* * * *
22118199 ATTAGGCTTCAAGTGCTCCCCTTATAAACTGCGAAAACAATTTAGCACACAATTAATCGCATAAA
769 ATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACACAATTAATCACATCAA
* * * * * * *
22118264 GCACTAAT-ACAACTTCACAAATAGTATCCGAATATGAAGGTCATCCATATGTAATTCCTCAACT
834 GCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATATGTAATCCCTCAACT
* *
22118328 TCCTTAAAGCACCCAAAAATGTATCTAAAA-AAAAGTAAGTATGAAACACAACAAAAAATTAAAA
899 TCCTTAGAGCACCCAAAAATGTATCTAAAAGAAAA-TAAGTATGAAACACAAAAAAAAATTAAAA
22118392 TCGTGCAAT
963 TCGTGCAAT
* *
22118401 AATTATGCGAATGGTTTTTATGCCCAAAATTGTTCAGAAACAAAGTCTGACGTCTTAAGCTCTAA
1 AATTATGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTCTTAAGCTCTAA
*
22118466 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTA-TATGTTTC
66 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTACCATGTTTC
* * *
22118530 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATTTTCAAATTCATTTCCATTTAAAAACCTA
131 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACTTG
*
22118595 CTAAAACAATGCTTTCTTATTTTAAAGCTATG-CTCCAGTGAAAATCATTTTCAAAGCAAAACAT
196 CTAAAACAATGCTTTCATATTTTAAAGCT-TGACTCCAGTGAAAATCATTTTCAAAGCAAAACAT
* * * * * *
22118659 AAAATTTCAGAAGCATTAGGCTTTGAGTGGTCCCCTTATAAACTACTAAAACAATTTAGCACACA
260 AAAATTTCAAAAACATTAGGCTTCGAGTGCTCCCC-TATAAACTGCTAAAACAAGTTAGCACACA
*
22118724 ATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCCTTCATAA
324 ATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATAA
* * *
22118789 GTAATCCCACAAGTTCCTTAGAGCACCTAAAAGTGTATCTAAAAGCAAATAAGTATGAAACACAA
389 GTAATCCCACAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACATAA
* * * *
22118854 TGATAAATTAAAATCATGCAAAATGATTTTTAAGTCACAATTTGAAATTGTGCGAATGGTTTTTA
454 TAAAAAATTAAAATCATG-AAAATGGTTTTTATGTCA-AATTTGAAATTGTGCGAATGGTTTTTA
* ** * *
22118919 TG-CCAGATTTGTTTGAAAACAAAGTCTGAT-TTTTAAAGCTCCAAAATTCTTTATAACTTACAT
517 TGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTT-AAGCTCCAAAATCCTTTATAACTTACAG
* * * * *
22118982 TTAACGCTATCAAAAATTAAAAGCAGTGCAAATTTTACCATGTTTATTTGTTTGAGCATGTTTAA
581 TTAACACTATGAAAAATTAAAA-CAATGCAAATTTTACCATGTTTCTTTGTTTGAGCAAGTTTAA
* * * *
22119047 CACATTGGATTTAAGATATTCAAATTCATTTTCATTTAAAAACCTGAC-AAGACAATGCTTTCAT
645 AACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT-ACTAAAACAATGCTTTCAT
* * * * * **
22119111 ATTTTAAAG-TTGGACTCTAGCGAAAATTATTTTTAAAGCAAAACATGAAATTTTAAAAAAATTA
709 ATTTTAAAGCTT-GACTCCAGTGAAAATTATTTTCAAAGCAAAACATAAAATTTCAAAAGCATTA
* * * * ** *
22119175 GGCTTCGAGTGTTTACCC-TATAAACTACTAAAGCAGGTTAGCACATAATTAATCACATCAAGCA
773 GGCTTCGAGTG-CTCCCCTTATAAACTGCTAAAACAATTTAGCACACAATTAATCACATCAAGCA
* * * * *
22119239 CCAATAAAAACTTCACAAATAATATCCAACTATCAAGATCATTCTTATGTAATCCCACAATTTCC
837 CCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATATGTAATCCCTCAACTTCC
* * * *
22119304 TTAGAGCACCGAAAAGTGTATCTAAAAGAAAATAAGTGTGAAAGACCATAAAAAATTAAAATCAT
902 TTAGAGCACCCAAAAATGTATCTAAAAGAAAATAAGTATG-AA-A-CA-CAAAAA--AAAAT--T
*
22119369 GCAAAAATGGTTTTTATGTCACAATTT
959 ---AAAATCG------TG---CAA--T
* * * * * *
22119396 GAAATTATGGGAATGGCTTTTATGCCCAGAATTGTTCAAAAACTAAGTTTGATGTTTTAAGCTCT
1 --AATTATGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTCTTAAGCTCT
* * * *
22119461 AAAATCCTTTATAACTTTCAGTTAACAATATGAAAAATTAAAACAAATGCAAGTTTTACCATGTT
64 AAAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTACCATGTT
* *
22119526 TCTTTGTTTGAACAAGTTTAAGACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACT
129 TCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACT
* *
22119591 TGCTAAAACAAAGCTTTTCATATTTTAAAGCTTGACTCCAGCGAAAATCATTTTCAAAGCAAAAC
194 TGCTAAAACAATGC-TTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAAC
* * * * * *
22119656 ATAAAACTACAAAAACGTTAGGCTTCGAGTGCTCCCCCTATATACTACTAAAACAAGTTAGCAAA
258 ATAAAATTTCAAAAACATTAGGCTTCGAGTGCT-CCCCTATAAACTGCTAAAACAAGTTAGCACA
* * *
22119721 CAATTAATCACATCAAGCGCAAATAACAACTTCACAAATAATATCCAAATATCGAGATCATTCAT
322 CAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCAT
* * * *
22119786 ATGTAATTCCTCAA-TATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATTAAACA
387 AAGTAATCCCACAACT-TCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACA
* *
22119850 CAATGAAAAATTAAAATC---------G------TG-C-AA--T--AATTGTGCGAATGGTTTTT
451 TAATAAAAAATTAAAATCATGAAAATGGTTTTTATGTCAAATTTGAAATTGTGCGAATGGTTTTT
* * *
22119894 GTGCCCAGAATTGCTCAGAAACAAAGTCTGATGTTTTAAGCTCCAAAATCCTTTATAACTTACAC
516 ATGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCCAAAATCCTTTATAACTTACA-
* ** * **
22119959 G-TAACACTATGAAAAATTAAAACTAACGCAAATTTTATAATGCTTCTTTGTTTGAGCGGGTTTA
580 GTTAACACTATGAAAAATTAAAAC-AATGCAAATTTTACCATGTTTCTTTGTTTGAGCAAGTTTA
* ** * *
22120023 AAACATTGGATTTAAGATATTCAAATTCATTTCCATTTAAAAACCTGTTAAAAGCATTGCTTTCG
644 AAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTACTAAAA-CAATGCTTTCA
* *
22120088 TATTCTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAACATAAAATTTCAAAAGCATTA
708 TATTTTAAAGCTTGACTCCAGTGAAAATTATTTTCAAAGCAAAACATAAAATTTCAAAAGCATTA
* * * *
22120153 GGCTTCGAGTGCTCTCCTTATAAATTGCTAAAACAATTTAGCACACAATTAATCACATAAATCAC
773 GGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACACAATTAATCACATCAAGCAC
* * * * * * *
22120218 CAAT-ACAACTTCCCAAATAGTAGCCAAATATGAAGGTCATCCATATGTAATTCCTCAACTTCCT
838 CAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATATGTAATCCCTCAACTTCCT
*
22120282 TAGAGCACCCAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAACAAAAAATTAAAATCGTG
903 TAGAGCACCCAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAAAAAAAAATTAAAATCGTG
22120347 CAAT
968 CAAT
* * * *
22120351 AATTGTGCGAATGGTTTTTATGCCCAAAATTGTTCAAAAACAAAGTCTGATGTCTTAAGCTCCAA
1 AATTATGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTCTTAAGCTCTAA
* * *
22120416 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAATCAACGCAAGTTTTA-TATGTTTC
66 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTACCATGTTTC
*
22120480 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATTTTCAAATTCATTTCCATTTAAAAACTTG
131 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACTTG
* * *
22120545 CTAAAACAATGATTTCTTATTTTAAAACTGTG-CTCC-GATGAAAATCATTTTCAAAGCAAAACA
196 CTAAAACAATGCTTTCATATTTTAAAGCT-TGACTCCAG-TGAAAATCATTTTCAAAGCAAAACA
* * * *
22120608 TAAAATTTCAAAAGCATTAGGCTTCGAGTGCTTCCCTTATAAACTGCTAAAATAATTTAGCACAC
259 TAAAATTTCAAAAACATTAGGCTTCGAGTGC-TCCCCTATAAACTGCTAAAACAAGTTAGCACAC
* * *
22120673 AATTAATCACATCAAGCACCAATAACAACTTCATAAATAAAATCCAAATATCAAGATCTTTCATA
323 AATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATA
* * * *
22120738 AGTAATCCCACAAGTTCCTTAGAGTACCTAAAAGTGTATCTAAAAGCAAATAAGCATGAAACACT
388 AGTAATCCCACAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACA-T
* * *
22120803 -ATTATAAATTAAAATCATGCAAAAATGGTTTTTAAGTCACAATTTGAAATTGTGCGAATGGTTT
452 AATAAAAAATTAAAATCATG--AAAATGGTTTTTATGTCA-AATTTGAAATTGTGCGAATGGTTT
** * *
22120867 TTATG-CCAGCTTTGTTCGAAAACAAAGTCTGATGTTTTAAGCTCCAAAATTCTTTATAACTTAC
514 TTATGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCCAAAATCCTTTATAACTTAC
* * * * * *
22120931 ACTTAACGCTGTGAAAAATTAAAAGCAATGTAAGTTTTACCATGTTTCTTTGTTTGAGCATGTTT
579 AGTTAACACTATGAAAAATTAAAA-CAATGCAAATTTTACCATGTTTCTTTGTTTGAGCAAGTTT
* * * * *
22120996 AACACATTAGATTTAAGATATTCAAATTCATTTCCATTTAGAAACCTGGC-AAAACAATGCTTTC
643 AAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT-ACTAAAACAATGCTTTC
* * * * * * **
22121060 ATATTTTAAACCTGGACTCCAGCGAAAATTATTTTTAAAGCAAAAGATAAAATTTTAAAAAAATT
707 ATATTTTAAAGCTTGACTCCAGTGAAAATTATTTTCAAAGCAAAACATAAAATTTCAAAAGCATT
* * * * *
22121125 AGGCTTCGAGCT-CTTACCC-TATAAACTGCTAGAGCAAGTTAGCACACAATTAAGCACATCAAG
772 AGGCTTCGAG-TGC-TCCCCTTATAAACTGCTAAAACAATTTAGCACACAATTAATCACATCAAG
* * * * *
22121188 CACCAATAAAAACTTCACAAATAATATTCAACTATCAAGATCATTCTTATGTAATGCCAT-AACT
835 CACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATATGTAAT-CCCTCAACT
* * * * *
22121252 TCCTTAGAGCACCTAAAAATGTATCTAAAAGAAAATAAGTGTGAAAGACAATAAAAATTTAAAAT
899 TCCTTAGAGCACCCAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAAAAAAAAATTAAAAT
22121317 CGTGCGAA-
964 CGTGC-AAT
22121325 AATTGTTTTTATGTCACAATTTGAAATTCTGGGAATGGCTTTTATGCCCAGAATTGTTCAGAAAC
1 AA------TTATG---C-----G-AA---T-GG--T---TTTTATGCCCAGAATTGTTCAGAAAC
* * * * * * * *
22121390 TAAGTCTGATGTTTTAAGCTCTATAATCATTTATAACTTTCATTTAACATTGTGAAAAATTAAAA
42 AAAGTCTGATGTCTTAAGCTCTAAAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAA
* * *
22121455 CAAATGCAAGTTTTACCATGTTTCTTTGTTTGAACAAGTTTAAGACATTGGATTCAAGATATTCA
107 CCAATGCAAGTTTTACCATGTTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCA
* *
22121520 AATTCATTTCCATTTTAAAACTTGCTAAAACAATGCTTTTCATATTTTAAAGCTTGACTCCAATG
172 AATTCATTTCCATTTAAAAACTTGCTAAAACAATGC-TTTCATATTTTAAAGCTTGACTCCAGTG
* * *
22121585 AAAATCATTTTCAAAGCAAAACATAAAACTACAAAAACATTAGGCTTCGAGTGCTCCCACTATAT
236 AAAATCATTTTCAAAGCAAAACATAAAATTTCAAAAACATTAGGCTTCGAGTGCTCCC-CTATAA
* *
22121650 ACTGCTAAAACAAGTTAGCACACAATTAATCACATCAAGCGCCAGTAACAACTTCACAAATAATA
300 ACTGCTAAAACAAGTTAGCACACAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATA
* * * * *
22121715 TCCAAATATCGAGATCATTCA-AATGTAATTCCTCAACATCCTTATAGCACCTAAAAATGTATCT
365 TCCAAATATCAAGATCATTCATAA-GTAATCCCACAACTTCCTTAGAGCACCTAAAAATGTATCT
* * **
22121779 AAAAGGAAATAAGTATGAAACACAACGAAAAATTAAAATC---------------ATG-C-AA--
429 AAAAGCAAATAAGTATGAAACATAATAAAAAATTAAAATCATGAAAATGGTTTTTATGTCAAATT
* *
22121825 T--AATTGTAG-GAAT-GTTTTTATGCTCAGAATTGTTCAGAAACAAAGTCTGATGTTTTAAGCT
494 TGAAATTGT-GCGAATGGTTTTTATGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCT
*
22121886 CCAAAATCCTTTATAACTTACACG-TAACACTATGAAAAATTAAAACCAATGCAAATTTTATCAT
558 CCAAAATCCTTTATAACTTACA-GTTAACACTATGAAAAATTAAAA-CAATGCAAATTTTACCAT
*
22121950 GCTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAA
621 GTTTCTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAA
*
22122015 ACCTACTAAAAGCATTGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATTATTTTCAAAGCAA
686 ACCTACTAAAA-CAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATTATTTTCAAAGCAA
22122080 AACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGC
750 AACATAAAATTTCAAAAGCATTAGGCTTCGAGTGCTCCCCTTATAAACTGCTAAAACAATTTAGC
* * * * *
22122145 ACACAATTAATCATATTAAGCACCAAT-ACAATTTCCCAAATAGTATCCAAATAT
815 ACACAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATAT
22122199 GACTGATTCT
Statistics
Matches: 5729, Mismatches: 760, Indels: 423
0.83 0.11 0.06
Matches are distributed among these distances:
950 1 0.00
951 224 0.04
952 292 0.05
953 761 0.13
954 398 0.07
955 6 0.00
956 1 0.00
957 5 0.00
958 8 0.00
960 3 0.00
962 1 0.00
963 6 0.00
966 6 0.00
967 1 0.00
968 1 0.00
969 3 0.00
971 9 0.00
972 147 0.03
973 495 0.09
974 748 0.13
975 236 0.04
976 381 0.07
977 473 0.08
978 243 0.04
979 9 0.00
980 8 0.00
981 2 0.00
982 2 0.00
983 5 0.00
984 6 0.00
986 1 0.00
987 6 0.00
988 1 0.00
989 2 0.00
990 3 0.00
992 8 0.00
993 6 0.00
994 2 0.00
995 5 0.00
996 1 0.00
997 178 0.03
998 345 0.06
999 466 0.08
1000 224 0.04
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (971 bp):
AATTATGCGAATGGTTTTTATGCCCAGAATTGTTCAGAAACAAAGTCTGATGTCTTAAGCTCTAA
AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTACCATGTTTC
TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACTTG
CTAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGTGAAAATCATTTTCAAAGCAAAACATA
AAATTTCAAAAACATTAGGCTTCGAGTGCTCCCCTATAAACTGCTAAAACAAGTTAGCACACAAT
TAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATAAGT
AATCCCACAACTTCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATGAAACATAATA
AAAAATTAAAATCATGAAAATGGTTTTTATGTCAAATTTGAAATTGTGCGAATGGTTTTTATGCC
CAGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCCAAAATCCTTTATAACTTACAGTTAAC
ACTATGAAAAATTAAAACAATGCAAATTTTACCATGTTTCTTTGTTTGAGCAAGTTTAAAACATT
GGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTACTAAAACAATGCTTTCATATTTTAA
AGCTTGACTCCAGTGAAAATTATTTTCAAAGCAAAACATAAAATTTCAAAAGCATTAGGCTTCGA
GTGCTCCCCTTATAAACTGCTAAAACAATTTAGCACACAATTAATCACATCAAGCACCAATAACA
ACTTCACAAATAATATCCAAATATCAAGATCATTCATATGTAATCCCTCAACTTCCTTAGAGCAC
CCAAAAATGTATCTAAAAGAAAATAAGTATGAAACACAAAAAAAAATTAAAATCGTGCAAT
Found at i:22119758 original size:501 final size:499
Alignment explanation
Indices: 22118401--22119873 Score: 2069
Period size: 498 Copynumber: 2.9 Consensus size: 499
22118391 ATCGTGCAAT
* * * *
22118401 AATTATGCGAATGGTTTTTATGCCCAAAATTGTTCAGAAACAAAGTCTGACGTCTTAAGCTCTAA
1 AATTATGCGAATGGTTTTTATGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCTAA
*
22118466 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACCAATGCAAGTTTTA-TATGTTTC
66 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAA-CAATGCAAGTTTTACCATGTTTC
* *
22118530 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATTTTCAAATTCATTTCCATTTAAAAACCTA
130 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTG
* *
22118595 CTAAAACAATGCTTTCTTATTTTAAAGCTATG-CTCCAGTGAAAATCATTTTCAAAGCAAAACAT
195 CTAAAACAATGCTTTCATATTTTAAAGCT-TGACTCCAGCGAAAATCATTTTCAAAGCAAAACAT
* * * * * *
22118659 AAAATTTCAGAAGCATTAGGCTTTGAGTGGTCCCCTTATAAACTACTAAAACAATTTAGCACACA
259 AAAATTTCAAAAACATTAGGCTTCGAGTGCTCCCCCTATAAACTACTAAAACAAGTTAGCACACA
* *
22118724 ATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCCTTCATAA
324 ATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATAT
*
22118789 GTAATCCCACAAGTTCCTTAGAGCACCTAAAAGTGTATCTAAAAGCAAATAAGTATGAAACACAA
389 GTAATCCCACAATTTCCTTAGAGCACCTAAAAGTGTATCTAAAAGCAAATAAGTATGAAACACAA
*
22118854 TGATAAATTAAAATCATGC-AAAATGATTTTTAAGTCACAATTTGA
454 TGAAAAATTAAAATCATGCAAAAATGATTTTTAAGTCACAATTTGA
* * ** *
22118899 AATTGTGCGAATGGTTTTTATG-CCAGATTTGTTTGAAAACAAAGTCTGAT-TTTTAAAGCTCCA
1 AATTATGCGAATGGTTTTTATGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTT-AAGCTCTA
* * * * * *
22118962 AAATTCTTTATAACTTACATTTAACGCTATCAAAAATTAAAAGCAGTGCAAATTTTACCATGTTT
65 AAATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAA-CAATGCAAGTTTTACCATGTTT
* * * * *
22119027 ATTTGTTTGAGCATGTTTAACACATTGGATTTAAGATATTCAAATTCATTTTCATTTAAAAACCT
129 CTTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCT
* * * *
22119092 GAC-AAGACAATGCTTTCATATTTTAAAG-TTGGACTCTAGCGAAAATTATTTTTAAAGCAAAAC
194 G-CTAAAACAATGCTTTCATATTTTAAAGCTT-GACTCCAGCGAAAATCATTTTCAAAGCAAAAC
* * * * ** * *
22119155 ATGAAATTTTAAAAAAATTAGGCTTCGAGTGTTTACCCTATAAACTACTAAAGCAGGTTAGCACA
257 ATAAAATTTCAAAAACATTAGGCTTCGAGTGCTCCCCCTATAAACTACTAAAACAAGTTAGCACA
* * * *
22119220 TAATTAATCACATCAAGCACCAATAAAAACTTCACAAATAATATCCAACTATCAAGATCATTCTT
322 CAATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCAT
* * * *
22119285 ATGTAATCCCACAATTTCCTTAGAGCACCGAAAAGTGTATCTAAAAGAAAATAAGTGTGAAAGAC
387 ATGTAATCCCACAATTTCCTTAGAGCACCTAAAAGTGTATCTAAAAGCAAATAAGTATGAAACAC
* * * *
22119350 CATAAAAAATTAAAATCATGCAAAAATGGTTTTTATGTCACAATTTGA
452 AATGAAAAATTAAAATCATGCAAAAATGATTTTTAAGTCACAATTTGA
* * * *
22119398 AATTATGGGAATGGCTTTTATGCCCAGAATTGTTCAAAAACTAAGTTTGATGTTTTAAGCTCTAA
1 AATTATGCGAATGGTTTTTATGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCTAA
* * *
22119463 AATCCTTTATAACTTTCAGTTAACAATATGAAAAATTAAAACAAATGCAAGTTTTACCATGTTTC
66 AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAAC-AATGCAAGTTTTACCATGTTTC
* * *
22119528 TTTGTTTGAACAAGTTTAAGACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACTTG
130 TTTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTG
*
22119593 CTAAAACAAAGCTTTTCATATTTTAAAGCTTGACTCCAGCGAAAATCATTTTCAAAGCAAAACAT
195 CTAAAACAATGC-TTTCATATTTTAAAGCTTGACTCCAGCGAAAATCATTTTCAAAGCAAAACAT
* * * * *
22119658 AAAACTACAAAAACGTTAGGCTTCGAGTGCTCCCCCTATATACTACTAAAACAAGTTAGCAAACA
259 AAAATTTCAAAAACATTAGGCTTCGAGTGCTCCCCCTATAAACTACTAAAACAAGTTAGCACACA
* * *
22119723 ATTAATCACATCAAGCGCAAATAACAACTTCACAAATAATATCCAAATATCGAGATCATTCATAT
324 ATTAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATAT
* * * * *
22119788 GTAATTCCTCAATATCCTTAGAGCACCTAAAAATGTATCTAAAAGCAAATAAGTATTAAACACAA
389 GTAATCCCACAATTTCCTTAGAGCACCTAAAAGTGTATCTAAAAGCAAATAAGTATGAAACACAA
*
22119853 TGAAAAATTAAAATCGTGCAA
454 TGAAAAATTAAAATCATGCAA
22119874 TAATTGTGCG
Statistics
Matches: 843, Mismatches: 120, Indels: 21
0.86 0.12 0.02
Matches are distributed among these distances:
496 4 0.00
497 81 0.10
498 324 0.38
499 46 0.05
500 152 0.18
501 234 0.28
502 2 0.00
ACGTcount: A:0.40, C:0.17, G:0.11, T:0.32
Consensus pattern (499 bp):
AATTATGCGAATGGTTTTTATGCCCAGAATTGTTCAAAAACAAAGTCTGATGTTTTAAGCTCTAA
AATCCTTTATAACTTACACTTAACACTATGAAAAATTAAAACAATGCAAGTTTTACCATGTTTCT
TTGTTTGAGCAAGTTTAAAACATTGGATTCAAGATATTCAAATTCATTTCCATTTAAAAACCTGC
TAAAACAATGCTTTCATATTTTAAAGCTTGACTCCAGCGAAAATCATTTTCAAAGCAAAACATAA
AATTTCAAAAACATTAGGCTTCGAGTGCTCCCCCTATAAACTACTAAAACAAGTTAGCACACAAT
TAATCACATCAAGCACCAATAACAACTTCACAAATAATATCCAAATATCAAGATCATTCATATGT
AATCCCACAATTTCCTTAGAGCACCTAAAAGTGTATCTAAAAGCAAATAAGTATGAAACACAATG
AAAAATTAAAATCATGCAAAAATGATTTTTAAGTCACAATTTGA
Found at i:22123011 original size:45 final size:43
Alignment explanation
Indices: 22122960--22123270 Score: 236
Period size: 41 Copynumber: 7.3 Consensus size: 43
22122950 TCGCAACGAT
*
22122960 GACTTTGAAAAATATAAACAAAGCTCCTCTAATCAGAGGCTGAAC
1 GACTTTG-AAAA-ATAAACAAAGCTCCTCTAATCAGAGGCTCAAC
22123005 GACTTTGAAAAACATAAACAAAGCTCCTCTAATCAGAGGCTCAAC
1 GACTTTG-AAAA-ATAAACAAAGCTCCTCTAATCAGAGGCTCAAC
* ** *
22123050 AACTTT-AAAAAT-AA-ATGGCTCCTCTAAT--TA-GCTCAAC
1 GACTTTGAAAAATAAACAAAGCTCCTCTAATCAGAGGCTCAAC
* * *
22123087 GACTTTG-AAAATGAATAAAGCTCTTCTAATCAGA-GCTCAAC
1 GACTTTGAAAAATAAACAAAGCTCCTCTAATCAGAGGCTCAAC
* * * * *
22123128 GATTTTG-AAAATGAATAAAGCTCCTCTAATCAAAGGCTCAAG
1 GACTTTGAAAAATAAACAAAGCTCCTCTAATCAGAGGCTCAAC
* * *
22123170 GACTTTTGGAAAACATAAACAAGGCTCCTTTAAAT-GGAGGCATC-AC
1 GAC-TTT-GAAAA-ATAAACAAAGCTCCTCT-AATCAGAGGC-TCAAC
* * * **
22123216 AACTTTGAAGAAT--AGATTGCTCCTCTAATCAGAGGCATC-AC
1 GACTTTGAAAAATAAACAAAGCTCCTCTAATCAGAGGC-TCAAC
*
22123257 AACTTTGAAAAATA
1 GACTTTGAAAAATA
22123271 GATTGCTTCT
Statistics
Matches: 221, Mismatches: 31, Indels: 31
0.78 0.11 0.11
Matches are distributed among these distances:
37 17 0.08
38 3 0.01
39 11 0.05
40 15 0.07
41 72 0.33
42 10 0.05
43 9 0.04
44 5 0.02
45 54 0.24
46 20 0.09
47 5 0.02
ACGTcount: A:0.40, C:0.20, G:0.15, T:0.25
Consensus pattern (43 bp):
GACTTTGAAAAATAAACAAAGCTCCTCTAATCAGAGGCTCAAC
Found at i:22124303 original size:14 final size:14
Alignment explanation
Indices: 22124286--22124356 Score: 65
Period size: 14 Copynumber: 5.0 Consensus size: 14
22124276 TTTCATTCAC
22124286 CTTTTTTTTATTTT
1 CTTTTTTTTATTTT
* *
22124300 CTTTTTTTCATTTC
1 CTTTTTTTTATTTT
*
22124314 CTTTTTTTCATTTT
1 CTTTTTTTTATTTT
22124328 -TTTTTCATTT-TTTT
1 CTTTTT--TTTATTTT
*
22124342 ATTTTTTTTCATTTT
1 CTTTTTTTT-ATTTT
22124357 TTTAAGCATA
Statistics
Matches: 48, Mismatches: 4, Indels: 9
0.79 0.07 0.15
Matches are distributed among these distances:
13 8 0.17
14 29 0.60
15 11 0.23
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.80
Consensus pattern (14 bp):
CTTTTTTTTATTTT
Found at i:22124319 original size:29 final size:28
Alignment explanation
Indices: 22124274--22124359 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 28
22124264 TGAGTCCTCC
*
22124274 TTTTTCATTCACCTTTTTTTTATTTTCTT
1 TTTTTCATT-TCCTTTTTTTTATTTTCTT
*
22124303 TTTTTCATTTCCTTTTTTTCA--TT-TT
1 TTTTTCATTTCCTTTTTTTTATTTTCTT
22124328 TTTTTCATTT--TTTTATTTT-TTTTCATT
1 TTTTTCATTTCCTTTT-TTTTATTTTC-TT
22124355 TTTTT
1 TTTTT
22124360 AAGCATAGCA
Statistics
Matches: 49, Mismatches: 3, Indels: 12
0.77 0.05 0.19
Matches are distributed among these distances:
23 4 0.08
24 3 0.06
25 14 0.29
26 2 0.04
27 7 0.14
28 10 0.20
29 9 0.18
ACGTcount: A:0.09, C:0.13, G:0.00, T:0.78
Consensus pattern (28 bp):
TTTTTCATTTCCTTTTTTTTATTTTCTT
Found at i:22124327 original size:9 final size:9
Alignment explanation
Indices: 22124310--22124359 Score: 57
Period size: 9 Copynumber: 5.3 Consensus size: 9
22124300 CTTTTTTTCA
*
22124310 TTTCCTTTT
1 TTTCATTTT
22124319 TTTCATTTTTT
1 TTTCA--TTTT
22124330 TTTCATTTT
1 TTTCATTTT
22124339 TTT-ATTTTT
1 TTTCA-TTTT
22124348 TTTCATTTT
1 TTTCATTTT
22124357 TTT
1 TTT
22124360 AAGCATAGCA
Statistics
Matches: 36, Mismatches: 1, Indels: 8
0.80 0.02 0.18
Matches are distributed among these distances:
8 1 0.03
9 25 0.69
10 1 0.03
11 9 0.25
ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82
Consensus pattern (9 bp):
TTTCATTTT
Found at i:22135747 original size:499 final size:490
Alignment explanation
Indices: 22134780--22138016 Score: 3585
Period size: 475 Copynumber: 6.6 Consensus size: 490
22134770 ATTCAGGGCA
* * * * * * *
22134780 TAAAAACCATTTTCGCGTAATTTTAATTTTTTATTGTCTTGCATACCTATTTTCTTTTACATACA
1 TAAAAA-CATTTT-GCATGATTTTAATTTTTCATTGTGTTTCATACTTATTTTCTTTTAGATACA
* * * *
22134845 TTTTTAGGTGCTCTAAGTAACTTATGGGATTACATAGGAATGATCTTGATAGTTGGATATTATTT
64 TTTTTAGGTGCTCTAAGGAACTTGTGGGATTACATATGAATGATCTTGATATTTGGATATTATTT
* * * * * * *
22134910 GTGAAGTTTTTATTGGTGCTTAATGTGATTAATTATGTGTTAACTTGCTTTAGCAGTTTATATGG
129 GTGAAGTTGTTATTGGTGCTTGATGTGATTAATTGTGTGCTAAATTGTTTTAGCAGTTTATAAGG
** ** * * *
22134975 TAAG-AGCTCGAAGCCTAATTTTTTTAAAATTTTATGTTTTGCTTTAAAAATAATTTTCATTGGA
194 GGAGCA-CTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTGCTTTGAAAATAATTTTCACTGGA
**
22135039 GTTTAGCTTTAAAATATGAAAGCATTGTTTT-GCCAGGTTTTTAAATGGAAATGAATTTGAATAT
258 G-CAAGCTTTAAAATATGAAAGCATTGTTTTAG-CAGGTTTTTAAATGGAAATGAATTTGAATAT
* * * * * * **
22135103 CTTAAATCTAATGTGTTAAACATGCTCAAACAAAGAAACATGGTAAAACTTGCGCTGCTTTTAAT
321 CTTGAATCCAATGTTTTAAACTTGCTCAAACAAAAAAACATGATAAAACTTGCATTG-TTTTAAT
* * * *
22135168 TTTTGACAGCGTTAAGTGTAAGTTATAAAGAATTTTGGAGCTTAAAACATCAGACTTTGTTTTCG
385 TTTTCATAGTGTTAAGTGTAAGTTATAAAGGATTTTGGAGCTTAAAACATCAGACTTTGTTTT-G
* *
22135233 AACAAATCT-GGCATAAAAACCATTCGCACAATTTCAAATTGTGACT
449 AACAATTTTGGGCATAAAAACCATTCGCACAA-TTC-AA-T-TGA-T
* *
22135279 TAAAAACCATTTTTGCATGATTTTAATTTATCATTGTGTTTCATACTTATTTGCTTTTAGATACA
1 TAAAAA-CA-TTTTGCATGATTTTAATTTTTCATTGTGTTTCATACTTATTTTCTTTTAGATACA
* *
22135344 TTTTTAGGTGCTCTAAGGAACTTGTGGGATTACTTATGAAGGATCTTGATATTTGGATATTATTT
64 TTTTTAGGTGCTCTAAGGAACTTGTGGGATTACATATGAATGATCTTGATATTTGGATATTATTT
* * *
22135409 GTAAAGTTGTTATTTGTGCTTGATGTGATTAATTGTGTGCTAAATTGTTTTAGCAGTCTATAAGG
129 GTGAAGTTGTTATTGGTGCTTGATGTGATTAATTGTGTGCTAAATTGTTTTAGCAGTTTATAAGG
* * * **
22135474 GGAGCACTCGAAGCCTAATGCTTTTCAAATTTTATGCTTTGCTTTGAAAATAATTTTCGCTAAAG
194 GGAGCACTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTGCTTTGAAAATAATTTTCACTGGAG
* * * * *
22135539 CACAACTTTAAAATAAGAAAGCATTGTTTTGGTAGGTTTTTAAATGGAAATGAATTTGAAAATCT
259 CA-AGCTTTAAAATATGAAAGCATTGTTTTAGCAGGTTTTTAAATGGAAATGAATTTGAATATCT
*
22135604 TGAATCCAATGTTTTAAACTTGCTCAAACAAAAAAACAT-ATAAAACTTGAATTAGTTTTAATTT
323 TGAATCCAATGTTTTAAACTTGCTCAAACAAAAAAACATGATAAAACTTGCATT-GTTTTAATTT
* *
22135668 TTCATAGTGTCAAGTGTAAGTTATAAAGGATTTTGGAGCTTAAGACATCAGA-TCTTGTTTCTGA
387 TTCATAGTGTTAAGTGTAAGTTATAAAGGATTTTGGAGCTTAAAACATCAGACT-TTGTTT-TGA
22135732 ACAATTTTGGGCATAAAAACCATTCGCACAATT--ATTG--
450 ACAATTTTGGGCATAAAAACCATTCGCACAATTCAATTGAT
* *
22135769 ------CA-----C--GATTTTAATTTTTCGTTGTGTTCCATACTTATTTTCTTTTAGATACATT
1 TAAAAACATTTTGCATGATTTTAATTTTTCATTGTGTTTCATACTTATTTTCTTTTAGATACATT
* * * * * * * * * * * *
22135821 TTTGGGTGTTCTAAAGAAGTTGAGGAATTACATATGGATAACCTTCATATTTGGATAGTATTTGG
66 TTTAGGTGCTCTAAGGAACTTGTGGGATTACATATGAATGATCTTGATATTTGGATATTATTTGT
* *
22135886 GAAGTTG-TATTGGTGCTTGATGTGATTAATTGTGTGCTAAATTATTTTAGCAGTTTATAAAGGG
131 GAAGTTGTTATTGGTGCTTGATGTGATTAATTGTGTGCTAAATTGTTTTAGCAGTTTATAAGGGG
* * *
22135950 AGTACTCGAAGCTTAATGCTTTTGAAATTTTATGTTTTGCTTTGAAAATGATTTTCACTGGAGTC
196 AGCACTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTGCTTTGAAAATAATTTTCACTGGAG-C
* * *
22136015 AAGCTTTAAAATATGAAAGTAATGCTTTTAGCAGGTTTTTAAATGGAAATGAATTTTAATATCTT
260 AAGCTTTAAAATATGAAAGCATTG-TTTTAGCAGGTTTTTAAATGGAAATGAATTTGAATATCTT
* * * ** * *
22136080 GAATCTAATGTTTTAAACTTGCTCAAACAAAGAAGCACAATAAAATTTGCATTGTTTTAATTTGT
324 GAATCCAATGTTTTAAACTTGCTCAAACAAAAAAACATGATAAAACTTGCATTGTTTTAATTTTT
* *
22136145 CATAGTGTTATGTGCAAGTTATAAAGGATTTTGGAGCTTAAAACA-CTAGACTTTGTTTCTGAAC
389 CATAGTGTTAAGTGTAAGTTATAAAGGATTTTGGAGCTTAAAACATC-AGACTTTGTTT-TGAAC
*
22136209 AATTTTGGGCATAAAGACCATTCG--C-A--CAATT-AT
452 AATTTTGGGCATAAAAACCATTCGCACAATTCAATTGAT
*
22136242 T----ACA-----C--GATTTTAATTTTTCATTGTGTTTCATACTT-TTTGCTTTTAGATACATT
1 TAAAAACATTTTGCATGATTTTAATTTTTCATTGTGTTTCATACTTATTTTCTTTTAGATACATT
** * * * *
22136295 TTTAGGTGCTCTAAGGATGTTGAGGAATTATATATGAGTGATCTTGATATTTGGATATTATTTGT
66 TTTAGGTGCTCTAAGGAACTTGTGGGATTACATATGAATGATCTTGATATTTGGATATTATTTGT
* ** * * * *
22136360 GAGGTTGTTATTGGCACTTGATGTGATTAATGGTGTGCTAACTTGTTTTAGCAGTATAT-AGGTA
131 GAAGTTGTTATTGGTGCTTGATGTGATTAATTGTGTGCTAAATTGTTTTAGCAGTTTATAAGG-G
* * * * * * *
22136424 GAGCACTCGAAGCCTAATGTTTTTGTAGTTTTCTATTTTGCTTTGAAAATGATTTTCGCTGGAGT
195 GAGCACTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTGCTTTGAAAATAATTTTCACTGGAG-
* *
22136489 CGAGCTTTAAAATATGAAAGGATTGTTTTAGCAGGTTTTTAAATGGAAATGAATTTGAATATCTT
259 CAAGCTTTAAAATATGAAAGCATTGTTTTAGCAGGTTTTTAAATGGAAATGAATTTGAATATCTT
* * * *
22136554 GAATCCAATGTCTTAAATTTGTTCAAACAAACAAAA-ATGGTAAAACTTGCATTTGTTTTAATTT
324 GAATCCAATGTTTTAAACTTGCTCAAACAAA-AAAACATGATAAAACTTGCA-TTGTTTTAATTT
* * * ** *
22136618 TTCATAGTGTTAACTGAAAGTTAGAAAGGATTTTAAAGCTTAAAACATCAGACTTAGTTTTTGAA
387 TTCATAGTGTTAAGTGTAAGTTATAAAGGATTTTGGAGCTTAAAACATCAGACTTTG-TTTTGAA
* * * * *
22136683 CAATTTTGGACATAAAACCCATTCCCAGAATTTCAAATTGTGACA
451 CAATTTTGGGCATAAAAACCATTCGCACAA-TTC-AA-T-TGA-T
* * * *
22136728 TAAAAACAATTTTCACATGATTTTAATTTTTTATTGTCTTTCACACTTATTTTCTTTTAGATACA
1 TAAAAAC-ATTTT-GCATGATTTTAATTTTTCATTGTGTTTCATACTTATTTTCTTTTAGATACA
* * *
22136793 TTTTTAGGTGCTCTAAGGAACTTGTGTGATTACATAAGAATGATCTTGATAGTTGGATATTATTT
64 TTTTTAGGTGCTCTAAGGAACTTGTGGGATTACATATGAATGATCTTGATATTTGGATATTATTT
* ** * *
22136858 GTGAAGTTTTTATTGGTGCTTTG-TGTGATTAATTAAGTGCTGACTTGTTTTAGCAGTTTAT-AG
129 GTGAAGTTGTTATTGGTGC-TTGATGTGATTAATTGTGTGCTAAATTGTTTTAGCAGTTTATAAG
* * * * *
22136921 GGTAAGCACTCGAAGCCTAAT-TTTTTAAAATTTTATGTTTTGCTTTAAAAATAATTTTCGCTGG
193 GG-GAGCACTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTGCTTTGAAAATAATTTTCACTGG
* * * *
22136985 AGTCTAGCTTTAAAATATGGAAGCATTGTTTT-GCCAAGTTTTTGAATGGAAATGAATTTGAATA
257 AG-CAAGCTTTAAAATATGAAAGCATTGTTTTAG-CAGGTTTTTAAATGGAAATGAATTTGAATA
* * * * * * *
22137049 TCTTAAATCCAATATGTTAAACATGCTCAAACAAAGAAACATGGTAAAACTTGCACTGCTTTTAA
320 TCTTGAATCCAATGTTTTAAACTTGCTCAAACAAAAAAACATGATAAAACTTGCATTG-TTTTAA
* * *
22137114 TTTTTGATAGTGTTAAATGTAAGTTATAAAGAATTTTGGAGCTTCAAAA-ATCAGACTTTGTTTT
384 TTTTTCATAGTGTTAAGTGTAAGTTATAAAGGATTTTGGAGCTT-AAAACATCAGACTTTGTTTT
* * *
22137178 CAAACAAATCT-GGCATAAAAACCATTCGCACAATTTCAAATTGTGACT
448 -GAACAATTTTGGGCATAAAAACCATTCGCACAA-TTC-AA-T-TGA-T
* * *
22137226 TAAAAATCATTTTGCATGATTTTAATTTATCATTGTGTTTCATACTTATTTGCTTTTAGATACAC
1 TAAAAA-CATTTTGCATGATTTTAATTTTTCATTGTGTTTCATACTTATTTTCTTTTAGATACAT
* * * * *
22137291 TTTTAGGTGCTCTAAAGAACTTGTGTGATTACTTATGAAGGATCTTGATATTTTGATATTATTTG
65 TTTTAGGTGCTCTAAGGAACTTGTGGGATTACATATGAATGATCTTGATATTTGGATATTATTTG
* *
22137356 TGAAGTTGTTATTGGTGCTTGATGTAATTAATTGTGTGCTAAATTGTTTTAGTAGTTTATAAGGG
130 TGAAGTTGTTATTGGTGCTTGATGTGATTAATTGTGTGCTAAATTGTTTTAGCAGTTTATAAGGG
* * * * *
22137421 GAGCACTTGAAGCCTAATGCTTTTGAAATTTTATGTTTTGCTTTAAAAATGATTTTCACTGAATC
195 GAGCACTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTGCTTTGAAAATAATTTTCACTGGAGC
* *
22137486 AAAGCTTTAAAATAAGAAAGCATTGTTTTAGCAGGTTTTTAAATGGAAATGAATTTGAAAATCTT
260 -AAGCTTTAAAATATGAAAGCATTGTTTTAGCAGGTTTTTAAATGGAAATGAATTTGAATATCTT
* * * *
22137551 GAATCCAATGTTTTAAACTTGCTAAAAGAAAGAAACAT-ATACAACTTGCATTGGTTTTAATTTT
324 GAATCCAATGTTTTAAACTTGCTCAAACAAAAAAACATGATAAAACTTGCATT-GTTTTAATTTT
* *
22137615 TCATAGTGTTCAGTGTAAGTTATAAAAGATTTTGGAGCTTAAGAA-ATCAGACTTTGTTTTTGAA
388 TCATAGTGTTAAGTGTAAGTTATAAAGGATTTTGGAGCTTAA-AACATCAGACTTTG-TTTTGAA
*
22137679 CAATTTTGGGCATAAAAAGCATTCG--C-A--C-A---AT
451 CAATTTTGGGCATAAAAACCATTCGCACAATTCAATTGAT
* * *
22137710 T------A--TTGCATGATTTTAATTTTTCGTTATGTTTCATACTTATTTTCGTTTAGATACATT
1 TAAAAACATTTTGCATGATTTTAATTTTTCATTGTGTTTCATACTTATTTTCTTTTAGATACATT
* * * * * * * *
22137767 TTTAGGTGCTCTAAAGAAGTTGAGGAATTACATATGGATGACCTTCATATTTGGATACTATTT-T
66 TTTAGGTGCTCTAAGGAACTTGTGGGATTACATATGAATGATCTTGATATTTGGATATTATTTGT
* *** *
22137831 GGAAGTTG-TATAGGTGCTTGATGTGATTAATTGCACGCTAAATTCTTTTAGCAGTTTATAAGGG
131 -GAAGTTGTTATTGGTGCTTGATGTGATTAATTGTGTGCTAAATTGTTTTAGCAGTTTATAAGGG
* * *
22137895 GAGCATTCGAAGCCTAATGCTTTTGAAATTTT-TTTATTTTCTTTGAAAATAATTTTCACTGGAT
195 GAGCACTCGAAGCCTAATGCTTTTGAAATTTTATGT-TTTGCTTTGAAAATAATTTTCACTGGA-
* *
22137959 TCAAGCTTTAAAATATGAAAGCAATGCTTTTAGCAGGTTTTTAAATGGAAATGAATTT
258 GCAAGCTTTAAAATATGAAAGCATTG-TTTTAGCAGGTTTTTAAATGGAAATGAATTT
22138017 AAATTGTGTG
Statistics
Matches: 2352, Mismatches: 315, Indels: 166
0.83 0.11 0.06
Matches are distributed among these distances:
472 4 0.00
473 3 0.00
474 408 0.17
475 646 0.27
476 17 0.01
477 2 0.00
478 1 0.00
481 1 0.00
482 2 0.00
483 3 0.00
484 3 0.00
485 2 0.00
486 1 0.00
490 3 0.00
491 1 0.00
492 1 0.00
493 2 0.00
494 1 0.00
495 2 0.00
496 6 0.00
497 248 0.11
498 286 0.12
499 557 0.24
500 149 0.06
501 3 0.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (490 bp):
TAAAAACATTTTGCATGATTTTAATTTTTCATTGTGTTTCATACTTATTTTCTTTTAGATACATT
TTTAGGTGCTCTAAGGAACTTGTGGGATTACATATGAATGATCTTGATATTTGGATATTATTTGT
GAAGTTGTTATTGGTGCTTGATGTGATTAATTGTGTGCTAAATTGTTTTAGCAGTTTATAAGGGG
AGCACTCGAAGCCTAATGCTTTTGAAATTTTATGTTTTGCTTTGAAAATAATTTTCACTGGAGCA
AGCTTTAAAATATGAAAGCATTGTTTTAGCAGGTTTTTAAATGGAAATGAATTTGAATATCTTGA
ATCCAATGTTTTAAACTTGCTCAAACAAAAAAACATGATAAAACTTGCATTGTTTTAATTTTTCA
TAGTGTTAAGTGTAAGTTATAAAGGATTTTGGAGCTTAAAACATCAGACTTTGTTTTGAACAATT
TTGGGCATAAAAACCATTCGCACAATTCAATTGAT
Found at i:22139309 original size:498 final size:495
Alignment explanation
Indices: 22138018--22139338 Score: 1721
Period size: 499 Copynumber: 2.7 Consensus size: 495
22138008 AATGAATTTA
* * *
22138018 AATTGTGTGCTAACTTGTTTTAACAGTATATAGGGGAGCACTCGAAGCCTAATGTTTTTG-TAGT
1 AATTGTGTGCTAAATTGTTTTAGCAGTTTATAGGGGAGCACTCGAAGCCTAATGTTTTTGATA-T
* *
22138082 TTTATGTTTTGCTTTGAAAATGATTTTCACTGGAATCGAGCTTTAAAATATGAAAGCATTGTTTT
65 TTTATGTTTTGCTTTGAAAATGATTTTCACTGG-AGC-AGCTTTAAAATAAGAAAGCATTGTTTT
* *
22138147 AGCAGGTTTTTAAATGTAAATGAATTTGAATATCTTGAATCCAATGTCTTAAACTT-CTTCAAAC
128 AGCAGATTTTTAAATGGAAATGAATTTGAATATCTTGAATCCAATGTCTTAAACTTGC-TCAAAC
* * * * *
22138211 AAAGAAACATGGT-AAACTTGCATTTGTTTTAA-TTTTCACAATGTTAACTGAAAGTTATAAAAG
192 AAAGAAACATGGTAAAACTTGCATTGGTTTTAATTTTTCATAGTGTTAAGTGTAAGTTAT-AAAG
* * * *
22138274 ATTTTAGAGCTTAAAACATCAGACTTAGTTTTTGAACAAATTTGGGCATAAAAGCCATTCCCAGA
256 ATTTTAGAGCTTAAAACATCAGACTTTGTTTTTGAACAAATTTGGGCATAAAAACCATTCGCACA
* * *
22138339 ATTTCAAATTGTGACATAAAATCAAATTTTGCACGATTTTAATTTTTATTGTCTTTCACACTTAT
321 ATTTCAAATTATGACATAAAAACAAATTTTGCACGATTTTAATTTTCATTGTCTTTCACACTTAT
* * * *
22138404 TTTCTTTTAGATACATTTTTAGGTGTTCTAAGGAACTTGTGGGATTACATAAGAATGATCTTGAT
386 TTACGTTTAGATACACTTTTAGGTGCTCTAAGGAACTTGTGGGATTACATAAGAATGATCTTGAT
* *
22138469 AGTTGGATATTGTTTGTGAAGTTTTTATTGGTGCTTGATGTGATT
451 AGTTGGATATTATTTGTGAAGTTGTTATTGGTGCTTGATGTGATT
* * * *
22138514 AATTGTGTGCTAAAATTGTTTTAGCAGTTTATAGGGTAAACGCTCGAAGGCTAACT-TTTTTAGA
1 AATTGTGTGCT-AAATTGTTTTAGCAGTTTATAGGG-GAGCACTCGAAGCCTAA-TGTTTTT-GA
* * *
22138578 -ATTTTATGTTTTGCTTTAAAAATAATTTTCGCTGGAGTCAGCTTTAAAATATA-AAAGCATTGT
62 TATTTTATGTTTTGCTTTGAAAATGATTTTCACTGGAG-CAGCTTTAAAATA-AGAAAGCATTGT
* * * *
22138641 TTT-GCCA-AGTTTTTAAATGGAAATGAATTTGAATATCTTAAATCTAATGTGTTAAACATGCTC
125 TTTAG-CAGA-TTTTTAAATGGAAATGAATTTGAATATCTTGAATCCAATGTCTTAAACTTGCTC
* * *
22138704 AAATAGAGAAACATGGTAAAACTTGCATTGCTTTTAATTTTTCATAGTGTTAAGTGTAAGTTATA
188 AAACAAAGAAACATGGTAAAACTTGCATTGGTTTTAATTTTTCATAGTGTTAAGTGTAAGTTATA
* *
22138769 AAGAATTTTGGAGCTTAAAACATCAGACTTTGTTTTTGAACAAATCT-GGCATAAAAACCATTCG
253 AAG-ATTTTAGAGCTTAAAACATCAGACTTTGTTTTTGAACAAATTTGGGCATAAAAACCATTCG
* * * * * *
22138833 CACAATTTCAAATTATGACTTAAAAACCATTTTTGCATGATTTTAATTTATCATTGTGTTTCATA
317 CACAATTTCAAATTATGACATAAAAACAAATTTTGCACGATTTTAATTT-TCATTGTCTTTCACA
** * * *
22138898 CTTATTTACGTTTAGATATGCTTTTAGGTGCTCTAAGGAACTTGTGGTATTACTTATGAA-GCAT
381 CTTATTTACGTTTAGATACACTTTTAGGTGCTCTAAGGAACTTGTGGGATTACATAAGAATG-AT
* *
22138962 CTTGATATTTGGATATTATTTGTGAAGTTGTTATTTGTGCTTGATGTGATT
445 CTTGATAGTTGGATATTATTTGTGAAGTTGTTATTGGTGCTTGATGTGATT
* * *
22139013 AATTGTGTGCTAAATTGTTTTAGTAGTTTATAAGGGGAGCACTCAAAGCCTAATGCTTTTGATAT
1 AATTGTGTGCTAAATTGTTTTAGCAGTTTAT-AGGGGAGCACTCGAAGCCTAATGTTTTTGATAT
* * *
22139078 TTTATGTTTTGCTTTGAAAATGATTTTCACTAGAGCAAAGTTTTGAAATAAGAAAGCATTGTTTT
65 TTTATGTTTTGCTTTGAAAATGATTTTCACTGGAGC--AGCTTTAAAATAAGAAAGCATTGTTTT
* * * * * * *
22139143 AGCAGATTTTTAAATGGAAATAAATTTGAAAATCTTGATTCCAACGTTTTAAACTTGCTAAAAGA
128 AGCAGATTTTTAAATGGAAATGAATTTGAATATCTTGAATCCAATGTCTTAAACTTGCTCAAACA
* * *
22139208 AAGAAACCT-ATAAAACTTGAATTGGTTTTAATTTTTCATAGTGTTAAGTGTAAGTTATAAATGA
193 AAGAAACATGGTAAAACTTGCATTGGTTTTAATTTTTCATAGTGTTAAGTGTAAGTTATAAA-GA
* * *
22139272 TTTTAGAGCTTAAGACATCAGACTTTGTTTCTGAACAATTTTGGGCATAAAAACCATTCGCACAA
257 TTTTAGAGCTTAAAACATCAGACTTTGTTTTTGAACAAATTTGGGCATAAAAACCATTCGCACAA
22139337 TT
322 TT
22139339 ATTGCACGAT
Statistics
Matches: 713, Mismatches: 87, Indels: 47
0.84 0.10 0.06
Matches are distributed among these distances:
496 12 0.02
497 115 0.16
498 286 0.40
499 298 0.42
500 2 0.00
ACGTcount: A:0.32, C:0.11, G:0.17, T:0.40
Consensus pattern (495 bp):
AATTGTGTGCTAAATTGTTTTAGCAGTTTATAGGGGAGCACTCGAAGCCTAATGTTTTTGATATT
TTATGTTTTGCTTTGAAAATGATTTTCACTGGAGCAGCTTTAAAATAAGAAAGCATTGTTTTAGC
AGATTTTTAAATGGAAATGAATTTGAATATCTTGAATCCAATGTCTTAAACTTGCTCAAACAAAG
AAACATGGTAAAACTTGCATTGGTTTTAATTTTTCATAGTGTTAAGTGTAAGTTATAAAGATTTT
AGAGCTTAAAACATCAGACTTTGTTTTTGAACAAATTTGGGCATAAAAACCATTCGCACAATTTC
AAATTATGACATAAAAACAAATTTTGCACGATTTTAATTTTCATTGTCTTTCACACTTATTTACG
TTTAGATACACTTTTAGGTGCTCTAAGGAACTTGTGGGATTACATAAGAATGATCTTGATAGTTG
GATATTATTTGTGAAGTTGTTATTGGTGCTTGATGTGATT
Found at i:22141735 original size:499 final size:498
Alignment explanation
Indices: 22140201--22142128 Score: 2484
Period size: 498 Copynumber: 3.8 Consensus size: 498
22140191 CGCACAATTA
* * * * *
22140201 TTGCACGATTTTAATTTTTCGTTGTGTTTCATACTTATTTGCTTTTAGATATATTTTTAGTTGCT
1 TTGCACGATTTTAATTTTTCATTGTCTTTCATACTTATTTTCTTTTAGATACATTTTTAGGTGCT
* ** * * *
22140266 CTAAAGATGTTGAGGAATTACATATGGATGATCTTGATATTTGGATATTATTTGTGAAGTTGTTA
66 CTAAGGAACTTGAGGAATTACATAAGAATGATCTTGATAGTTGGATATTATTTGTGAAGTTGTTA
*
22140331 TTGGCACTTAATGTAATTAATTGTGTGCTAACTTGTTTTAACAGTATATAGGGGAAGCACTCGAA
131 TTGGCGCTTAATGTAATTAATTGTGTGCTAACTTGTTTTAACAGTATATAGGGGAAGCACTCGAA
** * * *
22140396 GCCTAA-TGTTTTTGTAGTTTTATGTTTTGCTTTCAAAATGATTTTCACTGGAATCGAGCTTTAA
196 GCCTAACT-TTTTTAAAATTTTATGTTTTGCTTTAAAAATAATTTTCACTGGAATCGAGCTTTAA
* *
22140460 AATATGGAAGCATTGTTTTAGCAGGTTTTTAAATGGAAATGAATTTGAATATCTTGAATCCAATG
260 AATATGAAAGCATTGTTTT-GCAGGTTTTTAAATGGAAATGAATTTGAATATCTTAAATCCAATG
*
22140525 TCTTAAACTTCTTCAAACAAAGAAACATGGTAAAACTTGCATTTG-TTTTAATTTTTCACAGTGT
324 TCTTAAACTTCTTCAAACAAAGAAACATGGTAAAACTTGCATTTGCTTTTAATTTTTCACAGCGT
*
22140589 TAACTGATAGTTATAAAAGATTTTAGAGCTTAAAACATCAGACTTAGTTTTTGAACAAATTTGGG
389 TAACTGAAAGTTAT-AAAGATTTTAGAGCTTAAAACATCAGACTTAGTTTTTGAACAAATTT-GG
22140654 CATAAAAGCCATTCCCAGAATTTCAAATTGTGACATAAAATCCATTT
452 CATAAAAGCCATTCCCAGAATTTCAAATTGTGACATAAAATCCATTT
* * *
22140701 TCGCACGATTTTAATTTTTTATTGTCTTTCAAACTTATTTTCTTTTAGATACATTTTTAGGTGCT
1 TTGCACGATTTTAATTTTTCATTGTCTTTCATACTTATTTTCTTTTAGATACATTTTTAGGTGCT
* * * * *
22140766 C-AAGGAACTTGTGGGATTACATATGAATGATCTTGATAGTTGGATATTGTTTGTGAAGTTTTTA
66 CTAAGGAACTTGAGGAATTACATAAGAATGATCTTGATAGTTGGATATTATTTGTGAAGTTGTTA
* * * * * ** * * *
22140830 TTGGTGCCTGATGTGATTAACTGTGTGCTAACTTG-TTTAGTAGTTTATAGGGTAAGCGCTCGAA
131 TTGGCGCTTAATGTAATTAATTGTGTGCTAACTTGTTTTAACAGTATATAGGGGAAGCACTCGAA
* * *
22140894 GCCTAACTTTTTTAAAATTTTATGTTTTGCTTTAAAAATAATTTTCGCTGGAGTCTAGCTTTAAA
196 GCCTAACTTTTTTAAAATTTTATGTTTTGCTTTAAAAATAATTTTCACTGGAATCGAGCTTTAAA
*
22140959 ATATGATAGCATTGTTTTGCCAGGTTTTTAAATGGAAATGAATTTGAATATCTTAAATCCAATGT
261 ATATGAAAGCATTGTTTTG-CAGGTTTTTAAATGGAAATGAATTTGAATATCTTAAATCCAATGT
* * *
22141024 GTTAAACATGCTT-AAACAAAGAAACATGGTAAAACTTGCGA--TGCTTTTAATTTTTGACAGCG
325 CTTAAAC-TTCTTCAAACAAAGAAACATGGTAAAACTTGC-ATTTGCTTTTAATTTTTCACAGCG
* * * ** * *
22141086 TTAAGTGTAAGTTATAAAGAATTTTGGAGCTTAAAACATTGGACTTTGTTTTTGAACAAATCTGG
388 TTAACTGAAAGTTATAAAG-ATTTTAGAGCTTAAAACATCAGACTTAGTTTTTGAACAAATTTGG
* * * ** * *
22141151 CATAAAAACCATTCGCACAATTTCAAATTACGACTTAAAAACCATTT
452 CATAAAAGCCATTCCCAGAATTTCAAATTGTGACATAAAATCCATTT
* * * *
22141198 TTGCATGATTTTAATTTATCGTTGTGTTTCATACTTATTTGT-TTTTAGATACATTTTTAGGTGC
1 TTGCACGATTTTAATTTTTCATTGTCTTTCATACTTATTT-TCTTTTAGATACATTTTTAGGTGC
** *
22141262 TCTAAGGATGTTGAGGAATTACATAAGAATAATCTTGATA-TTCGGATATTATTTGTGAAGTTGT
65 TCTAAGGAACTTGAGGAATTACATAAGAATGATCTTGATAGTT-GGATATTATTTGTGAAGTTGT
*
22141326 TATTGGCGCTTAATGTAATTAATTGTGTGCTAACTTGTTTTAACAGTATATAGGGGGAGCACTCG
129 TATTGGCGCTTAATGTAATTAATTGTGTGCTAACTTGTTTTAACAGTATATAGGGGAAGCACTCG
*** * *
22141391 AAGCCTAA-TGTTTTCGTAGTTTTATGTTTTGCTTTAAAAATGATTTTCGA-TGGAATCGAGCTT
194 AAGCCTAACT-TTTTTAAAATTTTATGTTTTGCTTTAAAAATAATTTTC-ACTGGAATCGAGCTT
22141454 TAAAATATGAAAGCATTGTTTTAGCAGGTTTTTAAATGGAAATGAATTTGAATATCTT-AATCCA
257 TAAAATATGAAAGCATTGTTTT-GCAGGTTTTTAAATGGAAATGAATTTGAATATCTTAAATCCA
22141518 ATGTCTTAAACTTCTTCAAACAAAGAAACATGGTAAAACTTGCATTTG-TTTTAATTTTTCACAG
321 ATGTCTTAAACTTCTTCAAACAAAGAAACATGGTAAAACTTGCATTTGCTTTTAATTTTTCACAG
*
22141582 TGTTAACTGAAAGTTATAAAAGATTTTAGAGCTTAAAACATCAGACTTAGTTTTTGAACAAATTT
386 CGTTAACTGAAAGTTAT-AAAGATTTTAGAGCTTAAAACATCAGACTTAGTTTTTGAACAAATTT
* *
22141647 GGACATAAAAGCCATTCCCAGAATTTCATATTGTGACATAAAATCTATTT
450 GG-CATAAAAGCCATTCCCAGAATTTCAAATTGTGACATAAAATCCATTT
* *
22141697 TTGCACGATTTTAATTTTTTATTGTCTTTCACACTTATTTTCTTTTAGATACATTTTTAGGTGCT
1 TTGCACGATTTTAATTTTTCATTGTCTTTCATACTTATTTTCTTTTAGATACATTTTTAGGTGCT
* *
22141762 CTAAGGAACTTGTAGG-ATTACATAAGAATGATCTTGATAGTTGGATATTGTTTGTGAAGTTTTT
66 CTAAGGAACTTG-AGGAATTACATAAGAATGATCTTGATAGTTGGATATTATTTGTGAAGTTGTT
* * *
22141826 ATTGGTGCTTGATGTGAAGTTTTTATTGGTGCTTGATGTGATTAATTGTTTGCTGACTTGTTTTA
130 ATT-G-GC--GCT-T--A------A----TG--T-A----ATTAATTGTGTGCTAACTTGTTTTA
* * * * * *
22141891 GCAGTTTATACGGTAAGCGCTCGAAGCCTAACTTTTTTAAAATTTTATGTTTTACTTTAAAAATA
171 ACAGTATATAGGGGAAGCACTCGAAGCCTAACTTTTTTAAAATTTTATGTTTTGCTTTAAAAATA
* *
22141956 ATTTTCACTGGAGTCTAGCTTTAAAATATGAAAGCATTGTTTTGCTAGGTTTTTAAATGGAAATG
236 ATTTTCACTGGAATCGAGCTTTAAAATATGAAAGCATTGTTTTGC-AGGTTTTTAAATGGAAATG
* * *
22142021 -ATTTGAATATCTTAAATCCAATGTGTTAAACATGTTCAAACAAAGAAACATGGTAAAACTTGC-
300 AATTTGAATATCTTAAATCCAATGTCTTAAACTTCTTCAAACAAAGAAACATGGTAAAACTTGCA
** * * *
22142084 GCTGCTTTTAATTTTTTACAGCGTTAAGTGTAAGTTATAAAGATT
365 TTTGCTTTTAATTTTTCACAGCGTTAACTGAAAGTTATAAAGATT
22142129 GACTCTAGCA
Statistics
Matches: 1228, Mismatches: 150, Indels: 78
0.84 0.10 0.05
Matches are distributed among these distances:
497 113 0.09
498 433 0.35
499 373 0.30
500 65 0.05
501 2 0.00
503 2 0.00
504 1 0.00
506 1 0.00
512 1 0.00
516 2 0.00
518 1 0.00
519 1 0.00
522 25 0.02
523 207 0.17
524 1 0.00
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (498 bp):
TTGCACGATTTTAATTTTTCATTGTCTTTCATACTTATTTTCTTTTAGATACATTTTTAGGTGCT
CTAAGGAACTTGAGGAATTACATAAGAATGATCTTGATAGTTGGATATTATTTGTGAAGTTGTTA
TTGGCGCTTAATGTAATTAATTGTGTGCTAACTTGTTTTAACAGTATATAGGGGAAGCACTCGAA
GCCTAACTTTTTTAAAATTTTATGTTTTGCTTTAAAAATAATTTTCACTGGAATCGAGCTTTAAA
ATATGAAAGCATTGTTTTGCAGGTTTTTAAATGGAAATGAATTTGAATATCTTAAATCCAATGTC
TTAAACTTCTTCAAACAAAGAAACATGGTAAAACTTGCATTTGCTTTTAATTTTTCACAGCGTTA
ACTGAAAGTTATAAAGATTTTAGAGCTTAAAACATCAGACTTAGTTTTTGAACAAATTTGGCATA
AAAGCCATTCCCAGAATTTCAAATTGTGACATAAAATCCATTT
Found at i:22141841 original size:24 final size:24
Alignment explanation
Indices: 22141814--22141866 Score: 106
Period size: 24 Copynumber: 2.2 Consensus size: 24
22141804 GGATATTGTT
22141814 TGTGAAGTTTTTATTGGTGCTTGA
1 TGTGAAGTTTTTATTGGTGCTTGA
22141838 TGTGAAGTTTTTATTGGTGCTTGA
1 TGTGAAGTTTTTATTGGTGCTTGA
22141862 TGTGA
1 TGTGA
22141867 TTAATTGTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.17, C:0.04, G:0.30, T:0.49
Consensus pattern (24 bp):
TGTGAAGTTTTTATTGGTGCTTGA
Found at i:22144157 original size:217 final size:217
Alignment explanation
Indices: 22143773--22144204 Score: 702
Period size: 217 Copynumber: 2.0 Consensus size: 217
22143763 ATTGGATATC
* *
22143773 AAGATATTCAAATTCAAATAATTTCCATTCAAAAACTTGCCAAAACAGTAATATTTCATATTTTA
1 AAGAAATTCAAATTCAAATAATTTCCATTCAAAAACCTGCCAAAACAGTAATATTTCATATTTTA
* * * *
22143838 AAGCTTAACCCTAGTGAAAATCTTTTTTAAAGCAAAACATAAAATTTCAAAATCATTAAGCTTGA
66 AAGCTTAACCCTAGTGAAAATCTTTGTCAAAACAAAACATAAAATTTCAAAAGCATTAAGCTTGA
**
22143903 AGTGCGCATCAATATAAAAAAACAAGTTATGACACAATTAATCACATCAAGCAAAAATAACAGTT
131 AGTGCGCATCAATATAAAAAAACAAGTTAACACACAATTAATCACATCAAGCAAAAATAACAGTT
22143968 TCACAAATAATATCCAAATACA
196 TCACAAATAATATCCAAATACA
**
22143990 AAGAAATTCAAATTCAAATAATTTCCATTCAAAAACCTGTGAAAACAGTAATATTTCATATTTTA
1 AAGAAATTCAAATTCAAATAATTTCCATTCAAAAACCTGCCAAAACAGTAATATTTCATATTTTA
* *
22144055 AAGCTTGATCCTAGTGAAAATCTTTGTCAAAACAAAACATAAAATTTCAAAAGCATTAAGCTTGA
66 AAGCTTAACCCTAGTGAAAATCTTTGTCAAAACAAAACATAAAATTTCAAAAGCATTAAGCTTGA
* * * **
22144120 AGTGCGCTTGAATATAAAAAAACATGTTAACACACAATTAATCACATCAAGCACCAATAACAGTT
131 AGTGCGCATCAATATAAAAAAACAAGTTAACACACAATTAATCACATCAAGCAAAAATAACAGTT
*
22144185 TTACAAATAATATCCAAATA
196 TCACAAATAATATCCAAATA
22144205 TCAAGATTAT
Statistics
Matches: 197, Mismatches: 18, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
217 197 1.00
ACGTcount: A:0.47, C:0.16, G:0.08, T:0.28
Consensus pattern (217 bp):
AAGAAATTCAAATTCAAATAATTTCCATTCAAAAACCTGCCAAAACAGTAATATTTCATATTTTA
AAGCTTAACCCTAGTGAAAATCTTTGTCAAAACAAAACATAAAATTTCAAAAGCATTAAGCTTGA
AGTGCGCATCAATATAAAAAAACAAGTTAACACACAATTAATCACATCAAGCAAAAATAACAGTT
TCACAAATAATATCCAAATACA
Found at i:22144159 original size:719 final size:720
Alignment explanation
Indices: 22142568--22144705 Score: 3068
Period size: 719 Copynumber: 3.0 Consensus size: 720
22142558 ATATCAAAAT
* * ** * * *
22142568 ATTCAAATTCAAATAATTTCGACTT-AAAAACTTGCCAAAACAATAATGTTTCATATTTTAAAAC
1 ATTCAAATTCAAATAATTTCCA-TTCAAAAACCTGTGAAAACAGTAATATTTCATATTTTAAAGC
*
22142632 TTGACTCC-AGCGAAAATCATTCTCAAAGA-AAAACATAAAATTTCAAAAGCATTAAGCTTGGAG
65 TTGA-TCCTAGCGAAAATCATTCTCAAA-ACAAAACATAAAATTTCAAAAGCATTAAGCTTGAAG
* * * * * *
22142695 TGCG-TATGAATATAAACAAATAAGTTAGCACA-ATTTAATCAAATCAAGCACCAATAACAGTTT
128 TGCGCT-TGAATATAAAAAAACATGTTAACACACAATTAATCACATCAAGCACCAATAACAGTTT
* * * ** * *
22142758 AACAAATAACATCCAAATATCAAGATCGTTCTCATGCAACCCCAATAA-CAAGTTAATTCCTCAA
192 AACAAATAATATCCAAATATCAAGATTGTTCTCACGCAACCCCAA-AATCAAAATAATCCCACAA
* ** * * **
22142822 ATTTCATGTCTTAAAAATGTATCCAAAGCAAATAAGTATGAAAATTTAAAAC-GTGCAAACAATT
256 ATTTCCTCCCATAAATATGTATCCAAAGCAAATAAGTATGAAAA-TTAAAACTGTGCAAACGGTT
* *
22142886 TTTATATTACAATTTGGAATTTGTGCAAATGGTTTTTATGCCCATAATTCTTCAAAAATGAACC-
320 TTTATATCACAATTTGGAATTTGTGCAAATGGTTTTTATGCCCATAATTGTTCAAAAATG-ACCT
* * * *
22142950 TTGACATTTTAAGCTCCAAAGTCCTTTATAACTTACACCTGACGCTATGAAAATTTAAAAGTACT
384 TTGGCATTTTAAGCTCCAAAGTCCCTTATAACTTACACCTGACGCTATGAAAAATTAAAACTACT
* * *
22143015 GCAAGTTATCACGTTTCTTTCTTTGAGCAAAG--G-----A-T-G---TCAAGATATTCAAATTC
449 ACAAGTTATCATGTTTCTTTGTTTGAGCAAAGTTGAAAACATTGGATATCAAGATATTCAAATTC
* * *
22143068 AAATAATTTGCAATCAAAAACTTGCCAAAACAGTAATATTTCATATTTTAAAGCTTAACCCTAGC
514 AAATAATTTCCATTCAAAAACTTGCCAAAACAGTAATATTTCATATTTTAAAGCTTAACCCTAGT
* * * * * *
22143133 AAAAATCATTCTCAAAGTAGAACATAAAATTTCAAAAGCGTTAAGCTTGGGGTGCGCATTAATAT
579 GAAAATCATTCTCAAAGCAAAACATAAAATTTCAAAAGCATTAAGCTTGGAGTGCGCATCAATAT
* * * *
22143198 AAAAAAAATAAGTTATGACACAATTAATCACATCAAGCAACAATAATAGTTTCACAAATAACATT
644 -AAAAAAACAAGTTATGACACAATTAATCACATCAAGCAACAATAACAGTTTCACAAATAATATC
** *
22143263 CAAATATGAAGAT
708 CAAATACAAAGAA
22143276 ATTCAAATTCAAATAATTTCCATTCAAAAACCTGTGAAAACAGTAATATTTCATATTTTAAAGCT
1 ATTCAAATTCAAATAATTTCCATTCAAAAACCTGTGAAAACAGTAATATTTCATATTTTAAAGCT
* * * *
22143341 TGATCTTAGCGAAAATCACTCTCAAAACAAATCATAAAATTTCAAAAGCATTAAACTT-AGAGTG
66 TGATCCTAGCGAAAATCATTCTCAAAACAAAACATAAAATTTCAAAAGCATTAAGCTTGA-AGTG
* *
22143405 CGCTTGAATATAAAAAAACATGTTAACACACAATTAATCACATTAAGCACCAATAACAGTTTCAC
130 CGCTTGAATATAAAAAAACATGTTAACACACAATTAATCACATCAAGCACCAATAACAGTTTAAC
*
22143470 AAATAATATCCAAATATCAAG-TTGTTCTTACGCAACCCCAAAATCAAAATAATCCCACAAATTT
195 AAATAATATCCAAATATCAAGATTGTTCTCACGCAACCCCAAAATCAAAATAATCCCACAAATTT
** * * * *
22143534 CCTCCCCCAAATATGTATCCAAACCAAATAAGTAAGAAAATTAAAACTATGCAAATGGTTTTTAT
260 CCTCCCATAAATATGTATCCAAAGCAAATAAGTATGAAAATTAAAACTGTGCAAACGGTTTTTAT
* *
22143599 ATCACAATTTGGAATTTGTGCCAATGGTTTTTATGTCCATAATTGTTCAAAAATGACCTTTGGCA
325 ATCACAATTTGGAATTTGTGCAAATGGTTTTTATGCCCATAATTGTTCAAAAATGACCTTTGGCA
22143664 TTTTAAGCTCCAAAGTCCCTTATAACTTACACCTGACGCTATGAAAAATTAAAACTACTACAAGT
390 TTTTAAGCTCCAAAGTCCCTTATAACTTACACCTGACGCTATGAAAAATTAAAACTACTACAAGT
* *
22143729 TATCATGTTTTTTTGTTTGAGGAAAGTTGAAAACATTGGATATCAAGATATTCAAATTCAAATAA
455 TATCATGTTTCTTTGTTTGAGCAAAGTTGAAAACATTGGATATCAAGATATTCAAATTCAAATAA
22143794 TTTCCATTCAAAAACTTGCCAAAACAGTAATATTTCATATTTTAAAGCTTAACCCTAGTGAAAAT
520 TTTCCATTCAAAAACTTGCCAAAACAGTAATATTTCATATTTTAAAGCTTAACCCTAGTGAAAAT
* * * * *
22143859 CTTTTTTAAAGCAAAACATAAAATTTCAAAATCATTAAGCTTGAAGTGCGCATCAATATAAAAAA
585 CATTCTCAAAGCAAAACATAAAATTTCAAAAGCATTAAGCTTGGAGTGCGCATCAATATAAAAAA
*
22143924 ACAAGTTATGACACAATTAATCACATCAAGCAAAAATAACAGTTTCACAAATAATATCCAAATAC
650 ACAAGTTATGACACAATTAATCACATCAAGCAACAATAACAGTTTCACAAATAATATCCAAATAC
22143989 AAAGAA
715 AAAGAA
22143995 ATTCAAATTCAAATAATTTCCATTCAAAAACCTGTGAAAACAGTAATATTTCATATTTTAAAGCT
1 ATTCAAATTCAAATAATTTCCATTCAAAAACCTGTGAAAACAGTAATATTTCATATTTTAAAGCT
* * *
22144060 TGATCCTAGTGAAAATCTTTGTCAAAACAAAACATAAAATTTCAAAAGCATTAAGCTTGAAGTGC
66 TGATCCTAGCGAAAATCATTCTCAAAACAAAACATAAAATTTCAAAAGCATTAAGCTTGAAGTGC
*
22144125 GCTTGAATATAAAAAAACATGTTAACACACAATTAATCACATCAAGCACCAATAACAGTTTTACA
131 GCTTGAATATAAAAAAACATGTTAACACACAATTAATCACATCAAGCACCAATAACAGTTTAACA
* * *
22144190 AATAATATCCAAATATCAAGATTATTCTCACGCAACCCCAAAATCAAAATAATCTCGCAAATTTC
196 AATAATATCCAAATATCAAGATTGTTCTCACGCAACCCCAAAATCAAAATAATCCCACAAATTTC
22144255 CTCCCATAAATATGTATCCAAAGCAAATAAGTATGAAAATTAAAACTGTGCAAACGGTTTTTATA
261 CTCCCATAAATATGTATCCAAAGCAAATAAGTATGAAAATTAAAACTGTGCAAACGGTTTTTATA
* * * *
22144320 TCACAATTTGGAATTCGTGCTAATGGTTTTTATACCCATAATTGTTCAAAAATGAACTTTGGCAT
326 TCACAATTTGGAATTTGTGCAAATGGTTTTTATGCCCATAATTGTTCAAAAATGACCTTTGGCAT
* * *
22144385 TTTAAGCTTCAAAGTCCCTTATAACTTACA-CTTACGCTATGAAAAATTAAAACTACTACAAGTC
391 TTTAAGCTCCAAAGTCCCTTATAACTTACACCTGACGCTATGAAAAATTAAAACTACTACAAGTT
*
22144449 ATCATGTTTCTTTGTTAGAGCAAAGTTGAAAACATTGGATATCAAGATATTCAAATTCAAATAAT
456 ATCATGTTTCTTTGTTTGAGCAAAGTTGAAAACATTGGATATCAAGATATTCAAATTCAAATAAT
* * * * * *
22144514 TTCCTTTCAAATACTTGCCAAAACAGTAATATTCTC-GATTTTAAAGCTTGACTCTAGTGAAAGT
521 TTCCATTCAAAAACTTGCCAAAACAGTAATATT-TCATATTTTAAAGCTTAACCCTAGTGAAAAT
* * * *
22144578 CGTTCTCAAAGCAAAACATAAAATTTCAAAAGCATTAAGGTTGGAGTGCACATGAATATAAAAAA
585 CATTCTCAAAGCAAAACATAAAATTTCAAAAGCATTAAGCTTGGAGTGCGCATCAATATAAAAAA
* *
22144643 ACAAGTT-TG-CACAAATTAATCAAATCAAGCACCAATAACAGTTTCACAAATAATATCCAAATA
650 ACAAGTTATGACAC-AATTAATCACATCAAGCAACAATAACAGTTTCACAAATAATATCCAAATA
22144706 TCAGGATCAT
Statistics
Matches: 1283, Mismatches: 122, Indels: 40
0.89 0.08 0.03
Matches are distributed among these distances:
707 17 0.01
708 349 0.27
709 51 0.04
710 1 0.00
715 1 0.00
716 1 0.00
717 4 0.00
718 49 0.04
719 486 0.38
720 324 0.25
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.30
Consensus pattern (720 bp):
ATTCAAATTCAAATAATTTCCATTCAAAAACCTGTGAAAACAGTAATATTTCATATTTTAAAGCT
TGATCCTAGCGAAAATCATTCTCAAAACAAAACATAAAATTTCAAAAGCATTAAGCTTGAAGTGC
GCTTGAATATAAAAAAACATGTTAACACACAATTAATCACATCAAGCACCAATAACAGTTTAACA
AATAATATCCAAATATCAAGATTGTTCTCACGCAACCCCAAAATCAAAATAATCCCACAAATTTC
CTCCCATAAATATGTATCCAAAGCAAATAAGTATGAAAATTAAAACTGTGCAAACGGTTTTTATA
TCACAATTTGGAATTTGTGCAAATGGTTTTTATGCCCATAATTGTTCAAAAATGACCTTTGGCAT
TTTAAGCTCCAAAGTCCCTTATAACTTACACCTGACGCTATGAAAAATTAAAACTACTACAAGTT
ATCATGTTTCTTTGTTTGAGCAAAGTTGAAAACATTGGATATCAAGATATTCAAATTCAAATAAT
TTCCATTCAAAAACTTGCCAAAACAGTAATATTTCATATTTTAAAGCTTAACCCTAGTGAAAATC
ATTCTCAAAGCAAAACATAAAATTTCAAAAGCATTAAGCTTGGAGTGCGCATCAATATAAAAAAA
CAAGTTATGACACAATTAATCACATCAAGCAACAATAACAGTTTCACAAATAATATCCAAATACA
AAGAA
Found at i:22144962 original size:500 final size:502
Alignment explanation
Indices: 22143990--22145703 Score: 2203
Period size: 500 Copynumber: 3.5 Consensus size: 502
22143980 TCCAAATACA
* * *** *
22143990 AAGAAATTCAAATTCAAATAATTTCCATTCAAAAACCTGTGAAAACAGTAATATTTCATATTTTA
1 AAGATATTCAAATTCAAATAATTTCCATTCAAAAACTTACCAAAACAGTAATATTTCAGATTTTA
* * * * *
22144055 AAGCTTGATCCTAGTGAAAATCTTTGTCAAAACAAAACATAAAATTTCAAAAGCATTAAGCTTGA
66 AAGCTTGACCCTAGTGAAAATCGTTCTCAAAGCAAAACATAAAATTTCAAAAGCATTAAGCTTGG
* * * * *
22144120 AGTGCGCTTGAATATAAAAAAACATGTTAACACACAATTAATCACATCAAGCACCAATAACAGTT
131 AGTGCACATGAATATAAAAAAACAAGTTAGCACATAATTAATCACATCAAGCACCAATAACAGTT
* * * * * *
22144185 TTACAAATAATATCCAAATATCAAGATTATTCTCACGCAACCCCAA-AATCAAAATAATCTCGCA
196 TCACAAATAACATCCAAATATCAAGATCATTCTCACGCAACCCCAATAA-CAAGATAATCCCACA
* *
22144249 AATTTCCTCCCATAAATATGTATCCAAAGCAAATAAGTATGAAAATTAAAACTGTGCAAACGGTT
260 AATTTCCTTCC-TAAAAATGTATCCAAAGCAAATAAGTATGAAAATTAAAACTGTGCAAACGGTT
* * *
22144314 TTTATATCACAATTTGGAATTCGTGCTAATGGTTTTTATACCCATAATTGTTCAAAAATGAACTT
324 TTTATATCACAATTTGCAATTTGTGCTAATGGTTTTTATGCCCATAATTGTTCAAAAATGAACTT
* * ** *
22144379 TGGCATTTTAAGCTTCAAAGTCCCTTATAACTTACA-CTTACGCTATGAAAAATT-AAAACTACT
389 TGACATTTTAAGCTCCAAAGTCATTTATAACTTACACCTGACGCTATGAAAAATTAAAAACTA-T
* * *
22144442 ACAAGTCATCATGTTTCTTTGTTAGAGCAAAGTTGAAAACATTGGATATC
453 GCAAGTTATCACGTTTCTTTGTTAGAGCAAAGTTGAAAACATTGGATATC
* * *
22144492 AAGATATTCAAATTCAAATAATTTCCTTTCAAATACTTGCCAAAACAGTAATATTCTC-GATTTT
1 AAGATATTCAAATTCAAATAATTTCCATTCAAAAACTTACCAAAACAGTAATATT-TCAGATTTT
* * *
22144556 AAAGCTTGACTCTAGTGAAAGTCGTTCTCAAAGCAAAACATAAAATTTCAAAAGCATTAAGGTTG
65 AAAGCTTGACCCTAGTGAAAATCGTTCTCAAAGCAAAACATAAAATTTCAAAAGCATTAAGCTTG
* *
22144621 GAGTGCACATGAATATAAAAAAACAAGTTTGCACA-AATTAATCAAATCAAGCACCAATAACAGT
130 GAGTGCACATGAATATAAAAAAACAAGTTAGCACATAATTAATCACATCAAGCACCAATAACAGT
* * * * *
22144685 TTCACAAATAATATCCAAATATCAGGATCATTCTTACGCAACCCCAATAACAAGTTAATCCCTCA
195 TTCACAAATAACATCCAAATATCAAGATCATTCTCACGCAACCCCAATAACAAGATAATCCCACA
*
22144750 AATTTCCTGTCCTAAAAATGTATCCAAAGCAAA-AAGTATGAAAATTAAAACTGTGCAAACGATT
260 AATTTCCT-TCCTAAAAATGTATCCAAAGCAAATAAGTATGAAAATTAAAACTGTGCAAACGGTT
* * ** *
22144814 TTTATATCACAATTTGCAATTTGTGCTAACGGTTTTTATGCCCATAATTGTTTAAAAGCGAATTT
324 TTTATATCACAATTTGCAATTTGTGCTAATGGTTTTTATGCCCATAATTGTTCAAAAATGAACTT
22144879 TGACA-TTTAAGCTCCAAAGTCATTTATAACTTACACCTGACGCTATGAAAAATTAAAAACTATG
389 TGACATTTTAAGCTCCAAAGTCATTTATAACTTACACCTGACGCTATGAAAAATTAAAAACTATG
* * *
22144943 CAAGTTATCACGTTTCTTTGTTTA-AGCAAAGTTTAACACATTAGATATC
454 CAAGTTATCACGTTTCTTTG-TTAGAGCAAAGTTGAAAACATTGGATATC
* *
22144992 AAGATATTCAAATTCAAATAATTTGCATTCAAAAACTTACGAAAACAGTAATATTTC-GTATTTT
1 AAGATATTCAAATTCAAATAATTTCCATTCAAAAACTTACCAAAACAGTAATATTTCAG-ATTTT
* ** ** * *
22145056 AAAGCTTGACCCTGGAAAAAATCACTCTTAAAGC--AA-AT--AA----AAAA-CATTAAGCTTA
65 AAAGCTTGACCCTAGTGAAAATCGTTCTCAAAGCAAAACATAAAATTTCAAAAGCATTAAGCTTG
* * * *
22145111 GAGTGCACATAAATATAAAAAAATAAGTTAGTACATAATTAATCACATTAAGCACCAATAACCA-
130 GAGTGCACATGAATATAAAAAAACAAGTTAGCACATAATTAATCACATCAAGCACCAATAA-CAG
* *
22145175 TTTCACAAATAACATCCAAATATCAAGATCGTTCTCACGCAACCCCAATATCAAGATAATCCCAC
194 TTTCACAAATAACATCCAAATATCAAGATCATTCTCACGCAACCCCAATAACAAGATAATCCCAC
* * **
22145240 AAATTTCCTCTCTTAAACATGTATAAAAAGCAAATAAGTATGAAAATTAAAAAC-GTGCAAACGG
259 AAATTTCCT-TCCTAAAAATGTATCCAAAGCAAATAAGTATGAAAATT-AAAACTGTGCAAACGG
22145304 TTTTTATATCACAATTT-CGAATTTGTGCTAATGGTTTTTATGCCCATAATTGTTCAAAAATGAA
322 TTTTTATATCACAATTTGC-AATTTGTGCTAATGGTTTTTATGCCCATAATTGTTCAAAAATGAA
** * * ** * **
22145368 CACTGATATTTTAAGCTCCAAAGTCTTTTATAGTTTACACCTGACGTTATG----A--AACCAC-
386 CTTTGACATTTTAAGCTCCAAAGTCATTTATAACTTACACCTGACGCTATGAAAAATTAAAAACT
*
22145426 -TGCAAGTTATCACGTTTCTTTGTTTGAGCAAAGTTGAAAACATTGGATATC
451 ATGCAAGTTATCACGTTTCTTTGTTAGAGCAAAGTTGAAAACATTGGATATC
*
22145477 AAGATATTCAAATTCAAATAATTTCCATTCAAAAACTTACCAAAACAGTAATATTTCATATTTTA
1 AAGATATTCAAATTCAAATAATTTCCATTCAAAAACTTACCAAAACAGTAATATTTCAGATTTTA
* * * * ** *
22145542 AAGCTTAACCCTAGTGAAAATTGTTCCCAAAGCAAAACAAAAAATTTTGAAAGCATTAAGCTTGT
66 AAGCTTGACCCTAGTGAAAATCGTTCTCAAAGCAAAACATAAAATTTCAAAAGCATTAAGCTTGG
* * * *
22145607 AGTGCGCATCAATATAAAAAAAACAAGTTAGGACATAATTAATCACATCAAGCAACAATAACAGT
131 AGTGCACATGAATAT-AAAAAAACAAGTTAGCACATAATTAATCACATCAAGCACCAATAACAGT
* *
22145672 TTCACAAATAACATCCATATATGAAGAT-ATTC
195 TTCACAAATAACATCCAAATATCAAGATCATTC
22145704 AAATTCAAAT
Statistics
Matches: 1057, Mismatches: 128, Indels: 61
0.85 0.10 0.05
Matches are distributed among these distances:
484 2 0.00
485 129 0.12
487 6 0.01
488 1 0.00
489 1 0.00
490 42 0.04
491 115 0.11
492 86 0.08
493 43 0.04
494 3 0.00
495 30 0.03
496 68 0.06
497 2 0.00
498 2 0.00
499 30 0.03
500 230 0.22
501 120 0.11
502 145 0.14
503 2 0.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (502 bp):
AAGATATTCAAATTCAAATAATTTCCATTCAAAAACTTACCAAAACAGTAATATTTCAGATTTTA
AAGCTTGACCCTAGTGAAAATCGTTCTCAAAGCAAAACATAAAATTTCAAAAGCATTAAGCTTGG
AGTGCACATGAATATAAAAAAACAAGTTAGCACATAATTAATCACATCAAGCACCAATAACAGTT
TCACAAATAACATCCAAATATCAAGATCATTCTCACGCAACCCCAATAACAAGATAATCCCACAA
ATTTCCTTCCTAAAAATGTATCCAAAGCAAATAAGTATGAAAATTAAAACTGTGCAAACGGTTTT
TATATCACAATTTGCAATTTGTGCTAATGGTTTTTATGCCCATAATTGTTCAAAAATGAACTTTG
ACATTTTAAGCTCCAAAGTCATTTATAACTTACACCTGACGCTATGAAAAATTAAAAACTATGCA
AGTTATCACGTTTCTTTGTTAGAGCAAAGTTGAAAACATTGGATATC
Found at i:22151213 original size:20 final size:19
Alignment explanation
Indices: 22151179--22151219 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
22151169 AGATACATTC
22151179 AAAATATATTATTATTATA
1 AAAATATATTATTATTATA
* *
22151198 AAAATACTATTTTTATTTTA
1 AAAATA-TATTATTATTATA
22151218 AA
1 AA
22151220 TAATCAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (19 bp):
AAAATATATTATTATTATA
Found at i:22151589 original size:34 final size:33
Alignment explanation
Indices: 22151534--22151681 Score: 102
Period size: 34 Copynumber: 4.4 Consensus size: 33
22151524 ATAAAATGCT
*
22151534 GCTATATTTGCAGC-TTATGTATCTAGAAAATACC
1 GCTATATTAGC-GCGTT-TGTATCTAGAAAATACC
* *
22151568 GCTATATTAGCGACGTTTGTATCTTGAAAATGCC
1 GCTATATTAGCG-CGTTTGTATCTAGAAAATACC
* * * * * *
22151602 GTTTTATTAGTGGCATTTGTATAT-GAAAAATGCC
1 GCTATATTAG-CGCGTTTGTATCTAG-AAAATACC
* * **
22151636 GCTATATTACCTGCGTTTGAATCTAGAAAATATT
1 GCTATATTAGC-GCGTTTGTATCTAGAAAATACC
*
22151670 GTTATATTAGCG
1 GCTATATTAGCG
22151682 GCAATTGTAT
Statistics
Matches: 88, Mismatches: 20, Indels: 13
0.73 0.17 0.11
Matches are distributed among these distances:
33 3 0.03
34 81 0.92
35 4 0.05
ACGTcount: A:0.30, C:0.14, G:0.18, T:0.38
Consensus pattern (33 bp):
GCTATATTAGCGCGTTTGTATCTAGAAAATACC
Found at i:22151632 original size:68 final size:68
Alignment explanation
Indices: 22151560--22151712 Score: 191
Period size: 68 Copynumber: 2.2 Consensus size: 68
22151550 ATGTATCTAG
* * * * * * * *
22151560 AAAATACCGCTATATTAGC-GACGTTTGTATCTTGAAAATGCCGTTTTATTAGTGGCATTTGTAT
1 AAAATGCCGCTATATTACCTG-CGTTTGAATCTAGAAAATACCGTTATATTAGCGGCAATTGTAT
22151624 ATGA
65 ATGA
**
22151628 AAAATGCCGCTATATTACCTGCGTTTGAATCTAGAAAATATTGTTATATTAGCGGCAATTGTATA
1 AAAATGCCGCTATATTACCTGCGTTTGAATCTAGAAAATACCGTTATATTAGCGGCAATTGTATA
22151693 TGA
66 TGA
*
22151696 AAAATGCCACTATATTA
1 AAAATGCCGCTATATTA
22151713 ATAGTATTTG
Statistics
Matches: 73, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
68 72 0.99
69 1 0.01
ACGTcount: A:0.33, C:0.14, G:0.17, T:0.36
Consensus pattern (68 bp):
AAAATGCCGCTATATTACCTGCGTTTGAATCTAGAAAATACCGTTATATTAGCGGCAATTGTATA
TGA
Found at i:22159979 original size:186 final size:185
Alignment explanation
Indices: 22159694--22160660 Score: 1210
Period size: 186 Copynumber: 5.2 Consensus size: 185
22159684 GGATGGTTAG
* * *
22159694 TGAAGGCGTTTTTTGAGAACAAACGCCTTCAATAA-TTTCTCTTAAAATTTTTAAGATTATTAAA
1 TGAAGGCATTTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTGAGATTATTAAA
* * * * * *
22159758 TGTGCCATCTAGTGAAAAACAACTTCAATATTCCACAACTCAAATTTTAAGATAGTTAGTGAAGG
66 AGTGTCTTCCAGTGAAAAATACCTTCAATATTCCACAACTCAAATTTTAAGAT-GTTAGTGAAGG
** * * * *
22159823 TATTTATTCTAGAAAAACACATTCACTAATTTCTTTTAATTTACGTACATAACTAT
130 CGTTTATTCTAGAAAAATACCTTCACTAATTCCTTTTAATTTACGTACATAATTAT
* *
22159879 TGAAGGCATTTTTTTAGAACAAATGCCTTCAATAATTTT-TTTTAAAAATTTTTGAGATTATTAA
1 TGAAGGCATTTTTTTAGAACAAACGCCTTCAATAATTTTCTCTT-AAAATTTTTGAGATTATTAA
* * * * *
22159943 AAGTGTCTTCTAGTGAAAAATACCTTCGATATTCCACAATTCAAATTTTAAGATGGTTAGTTAAA
65 AAGTGTCTTCCAGTGAAAAATACCTTCAATATTCCACAACTCAAATTTTAAGAT-GTTAGTGAAG
*
22160008 GCGTTTATTCTAGAAAAATACCTTCACTAATTCTTTTTAATTTACGTACATAATTAT
129 GCGTTTATTCTAGAAAAATACCTTCACTAATTCCTTTTAATTTACGTACATAATTAT
*
22160065 TGAAGGCA-TTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAACTTTTGAGATTATTAAA
1 TGAAGGCATTTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTGAGATTATTAAA
* ** * * *
22160129 GGCATCTTCCAGTGAAAAATGCTTTTAATATTCCACAACTCAAATTTTAAGATGATTAGTGAAGG
66 AGTGTCTTCCAGTGAAAAATACCTTCAATATTCCACAACTCAAATTTTAAGATG-TTAGTGAAGG
* * * *
22160194 TGTTTATTCTAGAAAAACACCTTCACTAATTGCTTTTAATTTAGGTACATAATTAT
130 CGTTTATTCTAGAAAAATACCTTCACTAATTCCTTTTAATTTACGTACATAATTAT
* * * *
22160250 TGAAGGCATTTTTTGAGAATAAATGCATTCAATAATTTTCTCTTAAAATTTTT-AGGATTA-TAA
1 TGAAGGCATTTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTGA-GATTATTAA
* * *
22160313 AAGGTGTCTTCCA-TAGAAAAACACCTTCAATATTCAACAACTCAAATTTTAAGATGATTAATGA
65 AA-GTGTCTTCCAGT-GAAAAATACCTTCAATATTCCACAACTCAAATTTTAAGATG-TTAGTGA
** **
22160377 AGGCGTTTATTCTAGAAAAATACCTTCACTAATTCCTTTTAATTTGTGTATGTAATTAT
127 AGGCGTTTATTCTAGAAAAATACCTTCACTAATTCCTTTTAATTTACGTACATAATTAT
** * *
22160436 TGAAGGTGTTTTTTTAGAACAAACGCCTTTAATAATTTTCTTTTAAAATTTTTGAGATTATTAAA
1 TGAAGGCATTTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTGAGATTATTAAA
* * * * * * * *
22160501 GGCGTCTTCCAGTGAAAAATGCCTTTATTATTTCACTACTCAAATTTTAAAATGGTTAGTGAAGG
66 AGTGTCTTCCAGTGAAAAATACCTTCAATATTCCACAACTCAAATTTTAAGAT-GTTAGTGAAGG
* **
22160566 CGTTTATTCTAGAAAAATGCCTTCACTAATTCCTTTTAATTTTTGTACATAATTAT
130 CGTTTATTCTAGAAAAATACCTTCACTAATTCCTTTTAATTTACGTACATAATTAT
* * * * *
22160622 TGAAGACAGTTTTCTATTAA-AAATGCCTTCAATAATTTT
1 TGAAGGCATTTTTTTA-GAACAAACGCCTTCAATAATTTT
22160661 TGTTTGGAAT
Statistics
Matches: 676, Mismatches: 93, Indels: 25
0.85 0.12 0.03
Matches are distributed among these distances:
184 1 0.00
185 201 0.30
186 465 0.69
187 9 0.01
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.40
Consensus pattern (185 bp):
TGAAGGCATTTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTGAGATTATTAAA
AGTGTCTTCCAGTGAAAAATACCTTCAATATTCCACAACTCAAATTTTAAGATGTTAGTGAAGGC
GTTTATTCTAGAAAAATACCTTCACTAATTCCTTTTAATTTACGTACATAATTAT
Found at i:22160177 original size:371 final size:367
Alignment explanation
Indices: 22159694--22160661 Score: 1293
Period size: 371 Copynumber: 2.6 Consensus size: 367
22159684 GGATGGTTAG
* *
22159694 TGAAGGCGTTTTTTGAGAACAAACGCCTTCAATAA-TTTCTCTTAAAATTTTTAAGATTATTAAA
1 TGAAGGCATTTTTT-AGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTGAGATTATTAAA
** *
22159758 TGTGCCATC-T--AGTGAAAAACAACTTCAATATTCCACAACTCAAATTTTAAGATAGTTAGTGA
65 -G-G-CATCTTCCAGTGAAAAA-TGCTTTAATATTCCACAACTCAAATTTTAAGAT-GTTAGTGA
* * * *
22159820 AGGTATTTATTCTAGAAAAACACATTCACTAATTTCTTTTAATTTACGTACATAACTATTGAAGG
125 AGGTGTTTATTCTAGAAAAACACCTTCACTAATTCCTTTTAATTTACGTACATAATTATTGAAGG
*
22159885 CATTTTTTTAGAACAAATGCCTTCAATAATTTTTTTTAAAAATTTTT-GAGATTATTAAAA-GTG
190 CATTTTTTTAGAA-AAATGCCTTCAATAATTTTTCTT-AAAATTTTTAG-GATTA-TAAAAGGTG
* * * * * * * *
22159948 TCTTCTAGT-GAAAAATACCTTCGATATTCCACAATTCAAATTTTAAGATGGTTAGTTAAAGCGT
251 TCTTCCA-TAGAAAAACACCTTCAATATTCAACAACTCAAATTTTAAGATGATTAATGAAAGCGT
*
22160012 TTATTCTAGAAAAATACCTTCACTAATTCTTTTTAATTTACGTACATAATTAT
315 TTATTCTAGAAAAATACCTTCACTAATTCCTTTTAATTTACGTACATAATTAT
*
22160065 TGAAGGCATTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAACTTTTGAGATTATTAAAG
1 TGAAGGCATTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTGAGATTATTAAAG
22160130 GCATCTTCCAGTGAAAAATGCTTTTAATATTCCACAACTCAAATTTTAAGATGATTAGTGAAGGT
66 GCATCTTCCAGTGAAAAATGC-TTTAATATTCCACAACTCAAATTTTAAGATG-TTAGTGAAGGT
* *
22160195 GTTTATTCTAGAAAAACACCTTCACTAATTGCTTTTAATTTAGGTACATAATTATTGAAGGCATT
129 GTTTATTCTAGAAAAACACCTTCACTAATTCCTTTTAATTTACGTACATAATTATTGAAGGCATT
* *
22160260 TTTTGAGAATAAATGCATTCAATAATTTTCTCTTAAAATTTTTAGGATTATAAAAGGTGTCTTCC
194 TTTTTAGAA-AAATGCCTTCAATAATTTT-TCTTAAAATTTTTAGGATTATAAAAGGTGTCTTCC
*
22160325 ATAGAAAAACACCTTCAATATTCAACAACTCAAATTTTAAGATGATTAATGAAGGCGTTTATTCT
257 ATAGAAAAACACCTTCAATATTCAACAACTCAAATTTTAAGATGATTAATGAAAGCGTTTATTCT
** **
22160390 AGAAAAATACCTTCACTAATTCCTTTTAATTTGTGTATGTAATTAT
322 AGAAAAATACCTTCACTAATTCCTTTTAATTTACGTACATAATTAT
** * *
22160436 TGAAGGTGTTTTTTTAGAACAAACGCCTTTAATAATTTTCTTTTAAAATTTTTGAGATTATTAAA
1 TGAAGG-CATTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTGAGATTATTAAA
* * * * *
22160501 GGCGTCTTCCAGTGAAAAATGCCTTTATTATTTCACTACTCAAATTTTAAAATGGTTAGTGAAGG
65 GGCATCTTCCAGTGAAAAATG-CTTTAATATTCCACAACTCAAATTTTAAGAT-GTTAGTGAAGG
* ** ** * *
22160566 CGTTTATTCTAGAAAAATGCCTTCACTAATTCCTTTTAATTTTTGTACATAATTATTGAAGACAG
128 TGTTTATTCTAGAAAAACACCTTCACTAATTCCTTTTAATTTACGTACATAATTATTGAAGGCAT
* *
22160631 TTTTCTATTAAAAATGCCTTCAATAATTTTT
193 TTTTTTA-GAAAAATGCCTTCAATAATTTTT
22160662 GTTTGGAATT
Statistics
Matches: 532, Mismatches: 51, Indels: 28
0.87 0.08 0.05
Matches are distributed among these distances:
368 4 0.01
369 2 0.00
370 29 0.05
371 300 0.56
372 193 0.36
373 4 0.01
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.40
Consensus pattern (367 bp):
TGAAGGCATTTTTTAGAACAAACGCCTTCAATAATTTTCTCTTAAAATTTTTGAGATTATTAAAG
GCATCTTCCAGTGAAAAATGCTTTAATATTCCACAACTCAAATTTTAAGATGTTAGTGAAGGTGT
TTATTCTAGAAAAACACCTTCACTAATTCCTTTTAATTTACGTACATAATTATTGAAGGCATTTT
TTTAGAAAAATGCCTTCAATAATTTTTCTTAAAATTTTTAGGATTATAAAAGGTGTCTTCCATAG
AAAAACACCTTCAATATTCAACAACTCAAATTTTAAGATGATTAATGAAAGCGTTTATTCTAGAA
AAATACCTTCACTAATTCCTTTTAATTTACGTACATAATTAT
Found at i:22161283 original size:24 final size:24
Alignment explanation
Indices: 22161256--22161315 Score: 102
Period size: 24 Copynumber: 2.5 Consensus size: 24
22161246 TGTATGATAT
*
22161256 TGGTATGTTGAATCATATGCTGAA
1 TGGTATGCTGAATCATATGCTGAA
22161280 TGGTATGCTGAATCATATGCTGAA
1 TGGTATGCTGAATCATATGCTGAA
*
22161304 TGGTTTGCTGAA
1 TGGTATGCTGAA
22161316 GGGTGTGTCG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.37
Consensus pattern (24 bp):
TGGTATGCTGAATCATATGCTGAA
Found at i:22161312 original size:12 final size:12
Alignment explanation
Indices: 22161256--22161315 Score: 66
Period size: 12 Copynumber: 5.0 Consensus size: 12
22161246 TGTATGATAT
*
22161256 TGGTATGTTGAA
1 TGGTATGCTGAA
**
22161268 TCATATGCTGAA
1 TGGTATGCTGAA
22161280 TGGTATGCTGAA
1 TGGTATGCTGAA
**
22161292 TCATATGCTGAA
1 TGGTATGCTGAA
*
22161304 TGGTTTGCTGAA
1 TGGTATGCTGAA
22161316 GGGTGTGTCG
Statistics
Matches: 38, Mismatches: 10, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
12 38 1.00
ACGTcount: A:0.27, C:0.10, G:0.27, T:0.37
Consensus pattern (12 bp):
TGGTATGCTGAA
Found at i:22161313 original size:36 final size:36
Alignment explanation
Indices: 22161273--22161355 Score: 89
Period size: 36 Copynumber: 2.3 Consensus size: 36
22161263 TTGAATCATA
*
22161273 TGCTGAATGGTATG-CTGAATCATA-TGCTGAATGGTT
1 TGCTGAATGGTATGTC-GAA-CACATTGCTGAATGGTT
* * *
22161309 TGCTGAAGGGTGTGTCGAACACATTGCTGATTGGTT
1 TGCTGAATGGTATGTCGAACACATTGCTGAATGGTT
*
22161345 TGTTGAATGGT
1 TGCTGAATGGT
22161356 GTTTTTGTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
35 3 0.08
36 35 0.90
37 1 0.03
ACGTcount: A:0.22, C:0.11, G:0.31, T:0.36
Consensus pattern (36 bp):
TGCTGAATGGTATGTCGAACACATTGCTGAATGGTT
Found at i:22165208 original size:21 final size:22
Alignment explanation
Indices: 22165165--22165210 Score: 60
Period size: 21 Copynumber: 2.1 Consensus size: 22
22165155 TATCTTAATT
*
22165165 TTTCAAGCATTTTCTTTTAACC
1 TTTCAAGCATTTTATTTTAACC
22165187 TTTC-AGCATTTTATCTTT-ACC
1 TTTCAAGCATTTTAT-TTTAACC
22165208 TTT
1 TTT
22165211 TTAGTATGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
21 15 0.68
22 7 0.32
ACGTcount: A:0.20, C:0.22, G:0.04, T:0.54
Consensus pattern (22 bp):
TTTCAAGCATTTTATTTTAACC
Found at i:22167081 original size:16 final size:17
Alignment explanation
Indices: 22167060--22167096 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
22167050 TGGTAGATGC
22167060 TTTTATTTT-TTTAATT
1 TTTTATTTTATTTAATT
*
22167076 TTTTATTTTATTTTATT
1 TTTTATTTTATTTAATT
22167093 TTTT
1 TTTT
22167097 TGCAAAAAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 9 0.47
17 10 0.53
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (17 bp):
TTTTATTTTATTTAATT
Found at i:22173639 original size:25 final size:25
Alignment explanation
Indices: 22173607--22173657 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
22173597 AATTAATATA
*
22173607 TGAAATCAACAAACTTATATTACAT
1 TGAAATCAACAAACTTATAGTACAT
*
22173632 TGAAATCAACGAACTTATAGTACAT
1 TGAAATCAACAAACTTATAGTACAT
22173657 T
1 T
22173658 CCTCTATTAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.45, C:0.16, G:0.08, T:0.31
Consensus pattern (25 bp):
TGAAATCAACAAACTTATAGTACAT
Found at i:22176157 original size:26 final size:26
Alignment explanation
Indices: 22176128--22176180 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22176118 TCGGTCCGAT
22176128 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22176154 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22176180 C
1 C
22176181 CTAAGTAAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22177373 original size:482 final size:483
Alignment explanation
Indices: 22176468--22177422 Score: 1677
Period size: 482 Copynumber: 2.0 Consensus size: 483
22176458 TATTTCTGCA
*
22176468 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACATGAAGTTT
* *
22176533 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTTGAGATTTTT
66 CATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTAGAGATTTTT
* *
22176598 TAAAATTTTTTCGGAAGAGTTTTGGCCCCAATATTGGTAGGCATGATTCTTGTATTTTTGTTGGC
131 TAAAATTTTTTCGGAAGAGTTTTGCCCCCAATATTGGTAGACATGATTCTTGTATTTTTGTTGGC
* * *
22176663 ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGGCCATTTGAAAAACGTG
196 ATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
22176728 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
261 TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
*
22176793 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTGCCGCACC
326 GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTACCGCACC
22176858 CATCGCACATCATGTGCACACACCCCCTCGACCCACCGATCGCCGAAACCCCAATGCCACC-GTC
391 CATCGCACATCATGTGCACACACCCCCTCGACCCACCGATCGCCGAAACCCCAATGCCACCGGTC
22176922 AGGTTCTCCGACGATGCTCCGGTGATGG
456 AGGTTCTCCGACGATGCTCCGGTGATGG
22176950 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACATGAAGTTT
1 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACATGAAGTTT
* *
22177015 CATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTAGGGATTTTT
66 CATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTAGAGATTTTT
*
22177080 TAAAATTTTTTCGGAAGGAGTTTTGCCCCCAA-ACTTGGTAGACGTGA-TCTTTGTATTTTTGTT
131 TAAAATTTTTTCGGAA-GAGTTTTGCCCCCAATA-TTGGTAGACATGATTC-TTGTATTTTTGTT
*
22177143 GGCATGCAC-AAAAAATTCAGTTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
193 GGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
22177207 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
258 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTT
*
22177272 AAGGGGGTGTGAGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAG-TACCAG
323 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTACC-G
* * *
22177336 CACCCATCGCACATCATGTGCACACACCCCCTCGACCCCCCGATCGTCGAAACCCCAATGCCGCC
387 CACCCATCGCACATCATGTGCACACACCCCCTCGACCCACCGATCGCCGAAACCCCAATGCCACC
22177401 GGTCAGGTTCTCCGACGATGCT
452 GGTCAGGTTCTCCGACGATGCT
22177423 TCGACGATAG
Statistics
Matches: 450, Mismatches: 18, Indels: 9
0.94 0.04 0.02
Matches are distributed among these distances:
481 3 0.01
482 379 0.84
483 68 0.15
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (483 bp):
TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGACTTCACATGAAGTTT
CATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTAGAGATTTTT
TAAAATTTTTTCGGAAGAGTTTTGCCCCCAATATTGGTAGACATGATTCTTGTATTTTTGTTGGC
ATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTG
TCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAG
GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTACCGCACC
CATCGCACATCATGTGCACACACCCCCTCGACCCACCGATCGCCGAAACCCCAATGCCACCGGTC
AGGTTCTCCGACGATGCTCCGGTGATGG
Found at i:22177541 original size:26 final size:26
Alignment explanation
Indices: 22177512--22177564 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
22177502 CCAGTCCAAT
22177512 CTTAGA-TAGGCAATGAACTCCATATG
1 CTTAGACT-GGCAATGAACTCCATATG
* *
22177538 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
22177564 C
1 C
22177565 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:22178418 original size:26 final size:26
Alignment explanation
Indices: 22178382--22178434 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22178372 CCGACCCGAT
22178382 CTTACACTGGGAATGAACT-TCGTATG
1 CTTACACTGGGAATGAACTCT-GTATG
*
22178408 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
22178434 C
1 C
22178435 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:22179201 original size:17 final size:17
Alignment explanation
Indices: 22179160--22179210 Score: 66
Period size: 17 Copynumber: 3.0 Consensus size: 17
22179150 AAATGCATGA
* *
22179160 TTGGTTTAGGATTTAGG
1 TTGGTTTGGGGTTTAGG
*
22179177 GTGGTTTGGGGTTTAGG
1 TTGGTTTGGGGTTTAGG
*
22179194 TTGGTTTGGGGTCTAGG
1 TTGGTTTGGGGTTTAGG
22179211 ATTTAGGGTT
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.10, C:0.02, G:0.45, T:0.43
Consensus pattern (17 bp):
TTGGTTTGGGGTTTAGG
Found at i:22179226 original size:21 final size:21
Alignment explanation
Indices: 22179196--22179235 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
22179186 GGTTTAGGTT
*
22179196 GGTTTGGGGTCTAGGATTTAG
1 GGTTTAGGGTCTAGGATTTAG
* *
22179217 GGTTTAGGGTTTATGATTT
1 GGTTTAGGGTCTAGGATTT
22179236 GATTTAGGAA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.15, C:0.03, G:0.38, T:0.45
Consensus pattern (21 bp):
GGTTTAGGGTCTAGGATTTAG
Found at i:22179331 original size:13 final size:14
Alignment explanation
Indices: 22179307--22179335 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
22179297 GGGTTTGGTC
22179307 TAAGATTTAGGGTT
1 TAAGATTTAGGGTT
22179321 TAAGA-TTAGGGTT
1 TAAGATTTAGGGTT
22179334 TA
1 TA
22179336 GGGCTTATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.31, C:0.00, G:0.28, T:0.41
Consensus pattern (14 bp):
TAAGATTTAGGGTT
Found at i:22179336 original size:7 final size:7
Alignment explanation
Indices: 22179312--22179469 Score: 70
Period size: 7 Copynumber: 23.7 Consensus size: 7
22179302 TGGTCTAAGA
22179312 TTTAGGG
1 TTTAGGG
*
22179319 TTTA-AG
1 TTTAGGG
*
22179325 ATTAGGG
1 TTTAGGG
22179332 TTTAGGG
1 TTTAGGG
* **
22179339 CTTATAG
1 TTTAGGG
*
22179346 -TTAGGT
1 TTTAGGG
22179352 TTTA-GG
1 TTTAGGG
22179358 TTTAGGG
1 TTTAGGG
*
22179365 TTTAAGG
1 TTTAGGG
*
22179372 -TTACGG
1 TTTAGGG
22179378 -TTAGGG
1 TTTAGGG
*
22179384 TTTGGGG
1 TTTAGGG
22179391 TTT--GG
1 TTTAGGG
22179396 TTTAGGG
1 TTTAGGG
*
22179403 TTTAGGAAA
1 TTTAGG--G
22179412 TTT--GG
1 TTTAGGG
* *
22179417 TTT-TGA
1 TTTAGGG
22179423 TTTAGGG
1 TTTAGGG
22179430 TTTAGGG
1 TTTAGGG
22179437 TTT-GTGG
1 TTTAG-GG
*
22179444 TCTA-GG
1 TTTAGGG
22179450 TTTAGGG
1 TTTAGGG
*
22179457 TTTTAAGG
1 -TTTAGGG
22179465 TTTAG
1 TTTAG
22179470 TCATATGGTT
Statistics
Matches: 113, Mismatches: 24, Indels: 28
0.68 0.15 0.17
Matches are distributed among these distances:
5 8 0.07
6 32 0.28
7 64 0.57
8 6 0.05
9 3 0.03
ACGTcount: A:0.18, C:0.02, G:0.35, T:0.45
Consensus pattern (7 bp):
TTTAGGG
Found at i:22179337 original size:20 final size:20
Alignment explanation
Indices: 22179312--22179361 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
22179302 TGGTCTAAGA
22179312 TTTAGGGTTTA-AGATTAGGG
1 TTTAGGGTTTATAG-TTAGGG
* *
22179332 TTTAGGGCTTATAGTTAGGT
1 TTTAGGGTTTATAGTTAGGG
22179352 TTTA-GGTTTA
1 TTTAGGGTTTA
22179362 GGGTTTAAGG
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
19 5 0.19
20 19 0.73
21 2 0.08
ACGTcount: A:0.22, C:0.02, G:0.30, T:0.46
Consensus pattern (20 bp):
TTTAGGGTTTATAGTTAGGG
Found at i:22179385 original size:26 final size:26
Alignment explanation
Indices: 22179326--22179393 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 26
22179316 GGGTTTAAGA
*
22179326 TTAGGGTTTAGGGCTTATAGTTAGGTT
1 TTAGGGTTTAGGGTTTATAGTTAGG-T
22179353 TTA-GGTTTAGGGTTTA-AGGTTACGG-
1 TTAGGGTTTAGGGTTTATA-GTTA-GGT
*
22179378 TTAGGGTTTGGGGTTT
1 TTAGGGTTTAGGGTTT
22179394 GGTTTAGGGT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
25 4 0.11
26 27 0.75
27 5 0.14
ACGTcount: A:0.16, C:0.03, G:0.37, T:0.44
Consensus pattern (26 bp):
TTAGGGTTTAGGGTTTATAGTTAGGT
Found at i:22179392 original size:19 final size:19
Alignment explanation
Indices: 22179356--22179406 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
22179346 TTAGGTTTTA
22179356 GGTTTAGGGTTTAAGGTTAC
1 GGTTTAGGGTTTAAGGTT-C
** *
22179376 GG-TTAGGGTTTGGGGTTT
1 GGTTTAGGGTTTAAGGTTC
22179394 GGTTTAGGGTTTA
1 GGTTTAGGGTTTA
22179407 GGAAATTTGG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
18 2 0.08
19 22 0.85
20 2 0.08
ACGTcount: A:0.14, C:0.02, G:0.41, T:0.43
Consensus pattern (19 bp):
GGTTTAGGGTTTAAGGTTC
Done.