Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 131 of 195
Found at i:22179438 original size:20 final size:19
Alignment explanation
Indices: 22179415--22179460 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
22179405 TAGGAAATTT
*
22179415 GGTTTTGATTTAGGGTTTAG
1 GGTTTTGATCTA-GGTTTAG
*
22179435 GGTTTGTGGTCTAGGTTTAG
1 GGTTT-TGATCTAGGTTTAG
22179455 GGTTTT
1 GGTTTT
22179461 AAGGTTTAGT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
19 1 0.04
20 17 0.74
21 5 0.22
ACGTcount: A:0.11, C:0.02, G:0.37, T:0.50
Consensus pattern (19 bp):
GGTTTTGATCTAGGTTTAG
Found at i:22179444 original size:27 final size:27
Alignment explanation
Indices: 22179378--22179459 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
22179368 AAGGTTACGG
*
22179378 TTAGGGTTTG-GGGTTTGGTTTAGGGT
1 TTAGGGTTTGTGGTTTTGGTTTAGGGT
** *
22179404 TTAGGAAATT-TGGTTTTGATTTAGGGT
1 TTAGG-GTTTGTGGTTTTGGTTTAGGGT
* *
22179431 TTAGGGTTTGTGGTCTAGGTTTAGGGT
1 TTAGGGTTTGTGGTTTTGGTTTAGGGT
22179458 TT
1 TT
22179460 TAAGGTTTAG
Statistics
Matches: 44, Mismatches: 9, Indels: 5
0.76 0.16 0.09
Matches are distributed among these distances:
26 7 0.16
27 37 0.84
ACGTcount: A:0.13, C:0.01, G:0.38, T:0.48
Consensus pattern (27 bp):
TTAGGGTTTGTGGTTTTGGTTTAGGGT
Found at i:22180417 original size:20 final size:20
Alignment explanation
Indices: 22180392--22180438 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
22180382 CAACTTCTTG
22180392 TTTTAACCAAATTTGACCAA
1 TTTTAACCAAATTTGACCAA
* ** *
22180412 TTTTAACTATGTTTGACTAA
1 TTTTAACCAAATTTGACCAA
22180432 TTTTAAC
1 TTTTAAC
22180439 TTTGTTTGAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.34, C:0.15, G:0.06, T:0.45
Consensus pattern (20 bp):
TTTTAACCAAATTTGACCAA
Found at i:22180439 original size:20 final size:20
Alignment explanation
Indices: 22180403--22180451 Score: 80
Period size: 20 Copynumber: 2.5 Consensus size: 20
22180393 TTTAACCAAA
22180403 TTTGACCAATTTTAACTATG
1 TTTGACCAATTTTAACTATG
* *
22180423 TTTGACTAATTTTAACTTTG
1 TTTGACCAATTTTAACTATG
22180443 TTTGACCAA
1 TTTGACCAA
22180452 CTTTGATTGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.29, C:0.14, G:0.10, T:0.47
Consensus pattern (20 bp):
TTTGACCAATTTTAACTATG
Found at i:22180913 original size:44 final size:44
Alignment explanation
Indices: 22180830--22180915 Score: 102
Period size: 44 Copynumber: 2.0 Consensus size: 44
22180820 TTGAAAATTG
* *
22180830 AAATTGTGCCCAAAGAACTTTGAGATTGTGCTAGGAAGACTTCA
1 AAATTGTGCCCAAAGAACTTTGAGATTGTGCCAGAAAGACTTCA
* * * *
22180874 AAATTGTGCCTAATGGACTTTGATATTGTGCCCA-AAAGACTT
1 AAATTGTGCCCAAAGAACTTTGAGATTGTG-CCAGAAAGACTT
22180916 TGAAACCGTG
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
44 33 0.94
45 2 0.06
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.30
Consensus pattern (44 bp):
AAATTGTGCCCAAAGAACTTTGAGATTGTGCCAGAAAGACTTCA
Found at i:22180914 original size:22 final size:22
Alignment explanation
Indices: 22180827--22180920 Score: 75
Period size: 22 Copynumber: 4.3 Consensus size: 22
22180817 TTTTTGAAAA
22180827 TTGAAATTGTGCCC-AAAGAACT
1 TTGAAATTGTGCCCAAAAG-ACT
* * *
22180849 TTGAGATTGTG-CTAGGAAGACT
1 TTGAAATTGTGCCCA-AAAGACT
** * **
22180871 TCAAAATTGTGCCTAATGGACT
1 TTGAAATTGTGCCCAAAAGACT
*
22180893 TTGATATTGTGCCCAAAAGACT
1 TTGAAATTGTGCCCAAAAGACT
22180915 TTGAAA
1 TTGAAA
22180921 CCGTGCTTGA
Statistics
Matches: 53, Mismatches: 16, Indels: 6
0.71 0.21 0.08
Matches are distributed among these distances:
21 1 0.02
22 46 0.87
23 6 0.11
ACGTcount: A:0.33, C:0.15, G:0.21, T:0.31
Consensus pattern (22 bp):
TTGAAATTGTGCCCAAAAGACT
Found at i:22180969 original size:40 final size:40
Alignment explanation
Indices: 22180924--22181039 Score: 142
Period size: 40 Copynumber: 2.9 Consensus size: 40
22180914 TTTGAAACCG
* * ** *
22180924 TGCTTGAAGGACTTGGAATTCTTTCAAAATTTTAAGATTT
1 TGCTTGAAGGTCTTGAAATTCACTCAAAAATTTAAGATTT
* *
22180964 TGCTTGGAGGTCTTGAAAATCACTCAAAAATTTAAGATTT
1 TGCTTGAAGGTCTTGAAATTCACTCAAAAATTTAAGATTT
* * *
22181004 TGCTTAAAGGTCTTGAAATTTAGTCAAAAATTTAAG
1 TGCTTGAAGGTCTTGAAATTCACTCAAAAATTTAAG
22181040 GTTTCACCTG
Statistics
Matches: 64, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
40 64 1.00
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.38
Consensus pattern (40 bp):
TGCTTGAAGGTCTTGAAATTCACTCAAAAATTTAAGATTT
Found at i:22181054 original size:40 final size:40
Alignment explanation
Indices: 22180971--22181082 Score: 100
Period size: 40 Copynumber: 2.8 Consensus size: 40
22180961 TTTTGCTTGG
* * * ** *
22180971 AGGTCTTGAAAATCACTCAAAAATTTAAGATTTTGCTTAA
1 AGGTCTTGAAATTTACTCAAAAATTTAAGGTTTCACCTAA
* *
22181011 AGGTCTTGAAATTTAGTCAAAAATTTAAGGTTTCACCTGA
1 AGGTCTTGAAATTTACTCAAAAATTTAAGGTTTCACCTAA
* * * * *
22181051 AGGTCGTGGAATTTATTC-AGAATTTAAAGTTT
1 AGGTCTTGAAATTTACTCAAAAATTTAAGGTTT
22181083 TGCCTAGAGT
Statistics
Matches: 59, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
39 12 0.20
40 47 0.80
ACGTcount: A:0.36, C:0.11, G:0.17, T:0.37
Consensus pattern (40 bp):
AGGTCTTGAAATTTACTCAAAAATTTAAGGTTTCACCTAA
Found at i:22181192 original size:40 final size:40
Alignment explanation
Indices: 22181148--22181252 Score: 111
Period size: 40 Copynumber: 2.6 Consensus size: 40
22181138 GGAATTAATA
* * *
22181148 AAAAATTTAAGATTTTTCTTGAAGATTTTGGAAATCATTC
1 AAAAATTTAAGATTTTCCCTAAAGATTTTGGAAATCATTC
* * * *
22181188 AAAAATATAAGATTTTCCCTAAAGGTTTTGGAATTCTTTC
1 AAAAATTTAAGATTTTCCCTAAAGATTTTGGAAATCATTC
* * *
22181228 AAAATTTTAGGATTTTACCCAAAAG
1 AAAAATTTAAGATTTT-CCCTAAAG
22181253 TCTTGAAAGT
Statistics
Matches: 53, Mismatches: 11, Indels: 1
0.82 0.17 0.02
Matches are distributed among these distances:
40 46 0.87
41 7 0.13
ACGTcount: A:0.38, C:0.10, G:0.12, T:0.39
Consensus pattern (40 bp):
AAAAATTTAAGATTTTCCCTAAAGATTTTGGAAATCATTC
Found at i:22181339 original size:24 final size:23
Alignment explanation
Indices: 22181308--22181353 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 23
22181298 AGTTTGAAAA
*
22181308 TTTTCACTTTTTGTTCCAAAAGT
1 TTTTCACTCTTTGTTCCAAAAGT
*
22181331 TTTTGCACTCTTTGTTTCAAAAG
1 TTTT-CACTCTTTGTTCCAAAAG
22181354 ATCTTATCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 4 0.20
24 16 0.80
ACGTcount: A:0.22, C:0.17, G:0.11, T:0.50
Consensus pattern (23 bp):
TTTTCACTCTTTGTTCCAAAAGT
Found at i:22183128 original size:44 final size:45
Alignment explanation
Indices: 22183075--22183165 Score: 105
Period size: 44 Copynumber: 2.0 Consensus size: 45
22183065 GCATATGTCC
22183075 TTTTATTTTCCTATATTTTCCATTT-AATCATTCA-TTTTTTTTCT
1 TTTTATTTTCCT-TATTTTCCATTTCAATCATTCATTTTTTTTTCT
* * * ** *
22183119 TTTTTTTTTCCTTCTTTTCCTTTTCTCTCTTTCATTTTTTTTTCT
1 TTTTATTTTCCTTATTTTCCATTTCAATCATTCATTTTTTTTTCT
22183164 TT
1 TT
22183166 GAGTAGATTT
Statistics
Matches: 39, Mismatches: 6, Indels: 3
0.81 0.12 0.06
Matches are distributed among these distances:
43 10 0.26
44 17 0.44
45 12 0.31
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (45 bp):
TTTTATTTTCCTTATTTTCCATTTCAATCATTCATTTTTTTTTCT
Found at i:22183164 original size:15 final size:15
Alignment explanation
Indices: 22183109--22183165 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
22183099 TAATCATTCA
22183109 TTTTT-TTTCTTTTT
1 TTTTTCTTTCTTTTT
*
22183123 TTTTTCCTTCTTTTCCT
1 TTTTTCTTTCTTTT--T
*
22183140 TTTCTCTCTTTCATTTT
1 TTT-T-TCTTTCTTTTT
22183157 TTTTTCTTT
1 TTTTTCTTT
22183166 GAGTAGATTT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
14 5 0.14
15 12 0.34
16 1 0.03
17 8 0.23
18 1 0.03
19 8 0.23
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (15 bp):
TTTTTCTTTCTTTTT
Found at i:22187395 original size:25 final size:25
Alignment explanation
Indices: 22187357--22187409 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
22187347 TCTTTTTCCA
*
22187357 TTTTTGTTGCTTTTGTTTCTTTTGG
1 TTTTTGTAGCTTTTGTTTCTTTTGG
* * * *
22187382 TTTTTGTAGTTTTTTTTTTTTTTTG
1 TTTTTGTAGCTTTTGTTTCTTTTGG
22187407 TTT
1 TTT
22187410 AGAACAAGAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.02, C:0.04, G:0.15, T:0.79
Consensus pattern (25 bp):
TTTTTGTAGCTTTTGTTTCTTTTGG
Found at i:22188121 original size:25 final size:25
Alignment explanation
Indices: 22188093--22188146 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
22188083 AGACAACAAT
*
22188093 AAATGACATAATTAAAATATACGTG
1 AAATGACATAATTAAAATATACATG
* * *
22188118 AAATGACATGATTACAATATGCATG
1 AAATGACATAATTAAAATATACATG
22188143 AAAT
1 AAAT
22188147 ATGAAACACA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.50, C:0.09, G:0.13, T:0.28
Consensus pattern (25 bp):
AAATGACATAATTAAAATATACATG
Found at i:22188226 original size:10 final size:9
Alignment explanation
Indices: 22188201--22188225 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
22188191 ATCGAAACAC
22188201 TTTTTTTCA
1 TTTTTTTCA
22188210 TTTTTTTCA
1 TTTTTTTCA
22188219 TTTTTTT
1 TTTTTTT
22188226 TTTTGAAAAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:22193809 original size:23 final size:23
Alignment explanation
Indices: 22193779--22193833 Score: 101
Period size: 23 Copynumber: 2.4 Consensus size: 23
22193769 AGTAAAATGG
22193779 AAAAAAAAAGTAGGTTTGGAGTT
1 AAAAAAAAAGTAGGTTTGGAGTT
*
22193802 AAAAAAAAAGTAGGTTTGGTGTT
1 AAAAAAAAAGTAGGTTTGGAGTT
22193825 AAAAAAAAA
1 AAAAAAAAA
22193834 AAAAACTGGT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.55, C:0.00, G:0.22, T:0.24
Consensus pattern (23 bp):
AAAAAAAAAGTAGGTTTGGAGTT
Found at i:22194336 original size:29 final size:30
Alignment explanation
Indices: 22194281--22194337 Score: 80
Period size: 29 Copynumber: 1.9 Consensus size: 30
22194271 ACACTTTTTT
*
22194281 TAAAAAATACTAATAATAAATAAAATAAAA
1 TAAAAAATACTAATAATAAAGAAAATAAAA
* *
22194311 TAAAAATTA-TAATAATAAAGATAATAA
1 TAAAAAATACTAATAATAAAGAAAATAA
22194338 TAAAAAGATA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
29 16 0.67
30 8 0.33
ACGTcount: A:0.70, C:0.02, G:0.02, T:0.26
Consensus pattern (30 bp):
TAAAAAATACTAATAATAAAGAAAATAAAA
Found at i:22194634 original size:14 final size:14
Alignment explanation
Indices: 22194615--22194697 Score: 66
Period size: 14 Copynumber: 6.1 Consensus size: 14
22194605 ATTCCTTAAA
*
22194615 TGAAACCCTAAACT
1 TGAAACCCTAAAAT
22194629 TGAAA-CCTCAAAAT
1 TGAAACCCT-AAAAT
*
22194643 TGAGACCCTAAAAT
1 TGAAACCCTAAAAT
*
22194657 T-AAGACCCTATAA-
1 TGAA-ACCCTAAAAT
* *
22194670 TGAAACCC-CAATT
1 TGAAACCCTAAAAT
*
22194683 TGAAACCTTAAAAT
1 TGAAACCCTAAAAT
22194697 T
1 T
22194698 AAAGCCGTTA
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
12 1 0.02
13 16 0.30
14 33 0.62
15 3 0.06
ACGTcount: A:0.45, C:0.23, G:0.08, T:0.24
Consensus pattern (14 bp):
TGAAACCCTAAAAT
Found at i:22194770 original size:19 final size:19
Alignment explanation
Indices: 22194735--22194832 Score: 62
Period size: 19 Copynumber: 5.3 Consensus size: 19
22194725 AGCAAAAATG
*
22194735 CTAGGTGAAAA-TTGAAACC
1 CTAGGT-AAAACTCGAAACC
*
22194754 CTAGGTAAAACTCGAAAGTC
1 CTAGGTAAAACTCGAAA-CC
* *
22194774 CTAGGTAACACTCTAAACC
1 CTAGGTAAAACTCGAAACC
*
22194793 ATA---AAAAC-CGAAACC
1 CTAGGTAAAACTCGAAACC
* * * *
22194808 TTAGGTGAAACCCTAAACC
1 CTAGGTAAAACTCGAAACC
22194827 CTAGGT
1 CTAGGT
22194833 GAAATGATAA
Statistics
Matches: 61, Mismatches: 12, Indels: 12
0.72 0.14 0.14
Matches are distributed among these distances:
15 8 0.13
16 4 0.07
18 8 0.13
19 25 0.41
20 16 0.26
ACGTcount: A:0.41, C:0.23, G:0.16, T:0.19
Consensus pattern (19 bp):
CTAGGTAAAACTCGAAACC
Found at i:22199748 original size:8 final size:9
Alignment explanation
Indices: 22199735--22199803 Score: 52
Period size: 9 Copynumber: 7.7 Consensus size: 9
22199725 GCCTTAAAGG
*
22199735 AAAAAATAA
1 AAAAAATGA
22199744 AAAAAATGA
1 AAAAAATGA
22199753 AAAAAAGTG-
1 AAAAAA-TGA
*
22199762 AAAAAGTG-
1 AAAAAATGA
*
22199770 AAAAAAGGA
1 AAAAAATGA
* *
22199779 AAAAGATAA
1 AAAAAATGA
*
22199788 AAAAAAGGGA
1 AAAAAA-TGA
22199798 AAAAAA
1 AAAAAA
22199804 GTCTTAAGTC
Statistics
Matches: 47, Mismatches: 10, Indels: 5
0.76 0.16 0.08
Matches are distributed among these distances:
8 8 0.17
9 30 0.64
10 9 0.19
ACGTcount: A:0.77, C:0.00, G:0.16, T:0.07
Consensus pattern (9 bp):
AAAAAATGA
Found at i:22199765 original size:18 final size:17
Alignment explanation
Indices: 22199744--22199802 Score: 66
Period size: 18 Copynumber: 3.4 Consensus size: 17
22199734 GAAAAAATAA
22199744 AAAAAATGAAAAAAAGTG
1 AAAAAATGAAAAAAAG-G
*
22199762 AAAAAGTG-AAAAAAGG
1 AAAAAATGAAAAAAAGG
*
22199778 AAAAAGATAAAAAAAAGGG
1 AAAAA-ATGAAAAAAA-GG
22199797 AAAAAA
1 AAAAAA
22199803 AGTCTTAAGT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
16 6 0.17
17 8 0.23
18 14 0.40
19 7 0.20
ACGTcount: A:0.75, C:0.00, G:0.19, T:0.07
Consensus pattern (17 bp):
AAAAAATGAAAAAAAGG
Found at i:22199774 original size:9 final size:9
Alignment explanation
Indices: 22199730--22199782 Score: 51
Period size: 8 Copynumber: 6.2 Consensus size: 9
22199720 TAAATGCCTT
22199730 AAAG-GAAA
1 AAAGTGAAA
*
22199738 AAA-TAAAA
1 AAAGTGAAA
*
22199746 AAAATGAAAA
1 AAAGTG-AAA
22199756 AAAGTG-AA
1 AAAGTGAAA
22199764 AAAGTGAAA
1 AAAGTGAAA
22199773 AAAG-GAAA
1 AAAGTGAAA
22199781 AA
1 AA
22199783 GATAAAAAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
8 23 0.61
9 7 0.18
10 8 0.21
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (9 bp):
AAAGTGAAA
Found at i:22199775 original size:10 final size:10
Alignment explanation
Indices: 22199742--22199805 Score: 57
Period size: 9 Copynumber: 6.9 Consensus size: 10
22199732 AGGAAAAAAT
*
22199742 AAAAAAAATG
1 AAAAAAAGTG
22199752 AAAAAAAGTG
1 AAAAAAAGTG
22199762 --AAAAAGTG
1 AAAAAAAGTG
22199770 -AAAAAAG-G
1 AAAAAAAGTG
* *
22199778 AAAAAGA-TA
1 AAAAAAAGTG
*
22199787 AAAAAAAGGG
1 AAAAAAAGTG
22199797 AAAAAAAGT
1 AAAAAAAGT
22199806 CTTAAGTCTT
Statistics
Matches: 43, Mismatches: 7, Indels: 8
0.74 0.12 0.14
Matches are distributed among these distances:
8 9 0.21
9 17 0.40
10 17 0.40
ACGTcount: A:0.73, C:0.00, G:0.19, T:0.08
Consensus pattern (10 bp):
AAAAAAAGTG
Found at i:22199782 original size:35 final size:34
Alignment explanation
Indices: 22199730--22199801 Score: 90
Period size: 35 Copynumber: 2.1 Consensus size: 34
22199720 TAAATGCCTT
* * *
22199730 AAAGGAAAAAATAAAAAAAATGAAAAAAAGTGAA
1 AAAGGAAAAAAGAAAAAAAATAAAAAAAAGGGAA
* *
22199764 AAAGTGAAAAAAGGAAAAAGATAAAAAAAAGGGAA
1 AAAG-GAAAAAAGAAAAAAAATAAAAAAAAGGGAA
22199799 AAA
1 AAA
22199802 AAGTCTTAAG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
34 4 0.12
35 28 0.88
ACGTcount: A:0.75, C:0.00, G:0.18, T:0.07
Consensus pattern (34 bp):
AAAGGAAAAAAGAAAAAAAATAAAAAAAAGGGAA
Found at i:22201573 original size:9 final size:9
Alignment explanation
Indices: 22201546--22201593 Score: 62
Period size: 9 Copynumber: 5.3 Consensus size: 9
22201536 TGTGATAATC
22201546 AATAAAAAA
1 AATAAAAAA
*
22201555 ATATATAAAA
1 A-ATAAAAAA
*
22201565 AATAGAAAA
1 AATAAAAAA
22201574 AAT-AAAAA
1 AATAAAAAA
22201582 AATAAAAAA
1 AATAAAAAA
22201591 AAT
1 AAT
22201594 GAATGTAGCT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
8 7 0.21
9 19 0.56
10 8 0.24
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (9 bp):
AATAAAAAA
Found at i:22201591 original size:8 final size:8
Alignment explanation
Indices: 22201550--22201591 Score: 57
Period size: 8 Copynumber: 4.9 Consensus size: 8
22201540 ATAATCAATA
22201550 AAAAAATAT
1 AAAAAA-AT
22201559 ATAAAAAAT
1 A-AAAAAAT
22201568 AGAAAAAAT
1 A-AAAAAAT
22201577 AAAAAAAT
1 AAAAAAAT
22201585 AAAAAAA
1 AAAAAAA
22201592 ATGAATGTAG
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
8 14 0.45
9 12 0.39
10 5 0.16
ACGTcount: A:0.83, C:0.00, G:0.02, T:0.14
Consensus pattern (8 bp):
AAAAAAAT
Found at i:22202199 original size:34 final size:34
Alignment explanation
Indices: 22202150--22202300 Score: 105
Period size: 34 Copynumber: 4.5 Consensus size: 34
22202140 TTGAATTAAA
* *
22202150 CCCAACTTAGCTGGCATTCATGAAAAGATATAAG
1 CCCAATTTAGTTGGCATTCATGAAAAGATATAAG
*
22202184 CCCAATTTAGTTGGCACTCAATG--AAGAT-TAAG
1 CCCAATTTAGTTGGCATTC-ATGAAAAGATATAAG
* * *
22202216 CCTAATTTA-TCTAGCATTCATGACAAGA-ATTAAG
1 CCCAATTTAGT-TGGCATTCATGAAAAGATA-TAAG
** ** * * *
22202250 CATAGCTTAGCTGGCACTTTATGAAAAGATTTAAG
1 CCCAATTTAGTTGGCA-TTCATGAAAAGATATAAG
*
22202285 CCCAGTTTAGTTGGCA
1 CCCAATTTAGTTGGCA
22202301 CATAGAATTT
Statistics
Matches: 90, Mismatches: 18, Indels: 17
0.72 0.14 0.14
Matches are distributed among these distances:
31 4 0.04
32 18 0.20
33 9 0.10
34 30 0.33
35 29 0.32
ACGTcount: A:0.34, C:0.19, G:0.18, T:0.29
Consensus pattern (34 bp):
CCCAATTTAGTTGGCATTCATGAAAAGATATAAG
Found at i:22202300 original size:35 final size:35
Alignment explanation
Indices: 22202156--22202781 Score: 200
Period size: 35 Copynumber: 19.3 Consensus size: 35
22202146 TAAACCCAAC
* * *
22202156 TTAGCTGGCA-TTCATGAAAAGATATAAGCCCAAT
1 TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
* *
22202190 TTAGTTGGCAC-TCAATG--AAGA-TTAAGCCTAAT
1 TTAGTTGGCACTTC-ATGAAAAGATTTAAGCCCAGT
* * * ** *
22202222 TTA-TCTAGCA-TTCATGACAAGAATTAAGCATAGC
1 TTAGT-TGGCACTTCATGAAAAGATTTAAGCCCAGT
* *
22202256 TTAGCTGGCACTTTATGAAAAGATTTAAGCCCAGT
1 TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
* ***
22202291 TTAGTTGGCA---CAT--AGA-ATTTAAGTTTAGT
1 TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
* *
22202320 TTAGCTGGCAC--CA-G---A-ATTTAAGCCCAAT
1 TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
* * *
22202348 TTAGTTGGCACCTCATGAAAAGAATTAAGCCCA-A
1 TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
* * *
22202382 TTAATTGGCACATCATGAAAAGATTTAAGCCTAGT
1 TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
* * * *
22202417 TTAGCTGGCAC-CCA-G----GTTTTAAGCCCAAT
1 TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
** * *
22202446 ATTAACTGGCAC--CAATG-AAA-ATTTAAGCCTAAT
1 -TTAGTTGGCACTTC-ATGAAAAGATTTAAGCCCAGT
* * * * * * *
22202479 TTGGCTAGTA-ATAATG-AAAGATTTAAGCCTAG-
1 TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
*
22202511 --A-TTGGCA--TCAAT-AAAAGATTTAAG-CTAGT
1 TTAGTTGGCACTTC-ATGAAAAGATTTAAGCCCAGT
** * * *
22202540 TTAACTAGCACATCATGAAAAGATTTAAGCCTAGT
1 TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
* * * *
22202575 TTAGTTGGCAC--C-T---AGGTTTTAAGCACAAT
1 TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
* * *
22202604 TTAGTTGGTAC-TAATG-AAA-A-TTAAGCCTAGT
1 TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
22202635 TTA-TCTGGCA-TCTCATGAAAAGATTTAAG-CCAGT
1 TTAGT-TGGCACT-TCATGAAAAGATTTAAGCCCAGT
* * *
22202669 TT-GATAGCA--TCAATG-AAAGATTTAAGCCTAGT
1 TTAGTTGGCACTTC-ATGAAAAGATTTAAGCCCAGT
* * *
22202701 TTAGCTGGCACATCATGAAAAGATTTAAGCCCAAT
1 TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
* * *
22202736 TTAGCTGGCACATT-ATGAAAAGATTTACGCCTAGT
1 TTAGTTGGCAC-TTCATGAAAAGATTTAAGCCCAGT
22202771 TTAGTTGGCAC
1 TTAGTTGGCAC
22202782 CCATGCTTTA
Statistics
Matches: 450, Mismatches: 86, Indels: 111
0.70 0.13 0.17
Matches are distributed among these distances:
28 25 0.06
29 68 0.15
30 18 0.04
31 36 0.08
32 50 0.11
33 47 0.10
34 82 0.18
35 123 0.27
36 1 0.00
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.30
Consensus pattern (35 bp):
TTAGTTGGCACTTCATGAAAAGATTTAAGCCCAGT
Found at i:22202350 original size:28 final size:28
Alignment explanation
Indices: 22202278--22202359 Score: 101
Period size: 28 Copynumber: 2.9 Consensus size: 28
22202268 TTATGAAAAG
*
22202278 ATTTAAGCCCAGTTTAGTTGGCACATAGA
1 ATTTAAGCCCAGTTTAGTTGGCAC-CAGA
*** *
22202307 ATTTAAGTTTAGTTTAGCTGGCACCAGA
1 ATTTAAGCCCAGTTTAGTTGGCACCAGA
*
22202335 ATTTAAGCCCAATTTAGTTGGCACC
1 ATTTAAGCCCAGTTTAGTTGGCACC
22202360 TCATGAAAAG
Statistics
Matches: 43, Mismatches: 10, Indels: 1
0.80 0.19 0.02
Matches are distributed among these distances:
28 23 0.53
29 20 0.47
ACGTcount: A:0.29, C:0.18, G:0.20, T:0.33
Consensus pattern (28 bp):
ATTTAAGCCCAGTTTAGTTGGCACCAGA
Found at i:22202391 original size:34 final size:35
Alignment explanation
Indices: 22202332--22202412 Score: 119
Period size: 34 Copynumber: 2.3 Consensus size: 35
22202322 AGCTGGCACC
* *
22202332 AGAATTTAAGCCCAATTTAGTTGGCACCTCATGAAA
1 AGAA-TTAAGCCCAATTTAATTGGCACATCATGAAA
22202368 AGAATTAAGCCCAA-TTAATTGGCACATCATGAAA
1 AGAATTAAGCCCAATTTAATTGGCACATCATGAAA
*
22202402 AGATTTAAGCC
1 AGAATTAAGCC
22202413 TAGTTTAGCT
Statistics
Matches: 42, Mismatches: 3, Indels: 2
0.89 0.06 0.04
Matches are distributed among these distances:
34 28 0.67
35 10 0.24
36 4 0.10
ACGTcount: A:0.40, C:0.19, G:0.16, T:0.26
Consensus pattern (35 bp):
AGAATTAAGCCCAATTTAATTGGCACATCATGAAA
Found at i:22202516 original size:33 final size:33
Alignment explanation
Indices: 22202459--22202573 Score: 93
Period size: 33 Copynumber: 3.6 Consensus size: 33
22202449 AACTGGCACC
22202459 AATGAAA-ATTTAAGCCTA-ATTTGGCTAGTAAT
1 AATGAAAGATTTAAGCCTAGA-TTGGCTAGTAAT
22202491 AATGAAAGATTTAAGCCTAGATTGGC-A-TCAAT
1 AATGAAAGATTTAAGCCTAGATTGGCTAGT-AAT
* ** *
22202523 -A--AAAGATTTAAG-CTAGTTTAACTAGCACAT
1 AATGAAAGATTTAAGCCTAGATTGGCTAGTA-AT
*
22202553 CATGAAAAGATTTAAGCCTAG
1 AATG-AAAGATTTAAGCCTAG
22202574 TTTAGTTGGC
Statistics
Matches: 68, Mismatches: 4, Indels: 19
0.75 0.04 0.21
Matches are distributed among these distances:
28 7 0.10
29 13 0.19
30 2 0.03
31 3 0.04
32 11 0.16
33 16 0.24
34 12 0.18
35 4 0.06
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.30
Consensus pattern (33 bp):
AATGAAAGATTTAAGCCTAGATTGGCTAGTAAT
Found at i:22202558 original size:158 final size:159
Alignment explanation
Indices: 22202389--22202746 Score: 463
Period size: 158 Copynumber: 2.2 Consensus size: 159
22202379 CAATTAATTG
*
22202389 GCACATCATGAAAAGATTTAAGCCTAGTTTAGCTGGCACCCAGGTTTTAAGCCCAATATTAACTG
1 GCACATCATGAAAAGATTTAAGCCTAGTTTAGCTGGCACCCAGGTTTTAAGCACAAT-TTAACTG
* *
22202454 GCACCAATGAAAATTTAAGCCTAATTTGGCTAGTA-ATAATG-AAAGATTTAAGCCTAGATTG-G
65 GCACCAATGAAAA-TTAAGCCTAATTTAGCTAGCATATAATGAAAAGATTTAAGCC-AGATTGAG
22202516 CATCAATAAAAGATTTAAG-CTAGTTTAACTA
128 CATCAATAAAAGATTTAAGCCTAGTTTAACTA
* * **
22202547 GCACATCATGAAAAGATTTAAGCCTAGTTTAGTTGGCACCTAGGTTTTAAGCACAATTTAGTTGG
1 GCACATCATGAAAAGATTTAAGCCTAGTTTAGCTGGCACCCAGGTTTTAAGCACAATTTAACTGG
* * * * * * * *
22202612 TACTAATGAAAATTAAGCCTAGTTTATCTGGCATCTCATGAAAAGATTTAAGCCAGTTTGATAGC
66 CACCAATGAAAATTAAGCCTAATTTAGCTAGCATATAATGAAAAGATTTAAGCCAGATTG--AGC
* * *
22202677 ATCAATGAAAGATTTAAGCCTAGTTTAGCTG
129 ATCAATAAAAGATTTAAGCCTAGTTTAACTA
* *
22202708 GCACATCATGAAAAGATTTAAGCCCAATTTAGCTGGCAC
1 GCACATCATGAAAAGATTTAAGCCTAGTTTAGCTGGCAC
22202747 ATTATGAAAA
Statistics
Matches: 173, Mismatches: 21, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
156 16 0.09
157 25 0.14
158 67 0.39
160 19 0.11
161 46 0.27
ACGTcount: A:0.35, C:0.16, G:0.18, T:0.30
Consensus pattern (159 bp):
GCACATCATGAAAAGATTTAAGCCTAGTTTAGCTGGCACCCAGGTTTTAAGCACAATTTAACTGG
CACCAATGAAAATTAAGCCTAATTTAGCTAGCATATAATGAAAAGATTTAAGCCAGATTGAGCAT
CAATAAAAGATTTAAGCCTAGTTTAACTA
Found at i:22202654 original size:32 final size:33
Alignment explanation
Indices: 22202617--22203156 Score: 164
Period size: 35 Copynumber: 16.5 Consensus size: 33
22202607 GTTGGTACTA
22202617 ATGAAA-A-TTAAGCCTAGTTTATCTGGCATCTC
1 ATGAAAGATTTAAGCCTAGTTTA-CTGGCATCTC
* *
22202649 ATGAAAAGATTTAAGCC-AGTTTGA-TAGCATC-A
1 ATG-AAAGATTTAAGCCTAGTTT-ACTGGCATCTC
22202681 ATGAAAGATTTAAGCCTAGTTTAGCTGGCA-CATC
1 ATGAAAGATTTAAGCCTAGTTTA-CTGGCATC-TC
* * *
22202715 ATGAAAAGATTTAAGCCCAATTTAGCTGGCA-CATT
1 ATG-AAAGATTTAAGCCTAGTTTA-CTGGCATC-TC
* * *
22202750 ATGAAAAGATTTACGCCTAGTTTAGTTGGCA-CCC
1 ATG-AAAGATTTAAGCCTAGTTTA-CTGGCATCTC
* * * * * *
22202784 AT----GCTTTAAGCCCAATATTAACTGCCAAC-A
1 ATGAAAGATTTAAGCCTAGT-TT-ACTGGCATCTC
* *
22202814 ATGAAA-ATTTAAGCCTAGTTTATTTGGCACCTC
1 ATGAAAGATTTAAGCCTAGTTTA-CTGGCATCTC
* *
22202847 ATGAAAAGATTTAAGCCTAGTTTGACTGACAT-TA
1 ATG-AAAGATTTAAGCCTAGTTT-ACTGGCATCTC
* * *
22202881 ATAAAAGTTTTAAGCCTAG-TT--TGGCCACCATC
1 ATGAAAGATTTAAGCCTAGTTTACTGG-CATC-TC
* * *
22202913 AATGAAAGATTTAAG-CTCGTTTTAGCTGTCA-CATT
1 -ATGAAAGATTTAAGCCTAG-TTTA-CTGGCATC-TC
22202948 ATGAAAAGATTTAAGCCTAGTTTATCTGGCA-C-C
1 ATG-AAAGATTTAAGCCTAGTTTA-CTGGCATCTC
* * * *
22202981 -T--AGGATTTAAGCCTAGATTAGCTAGC-TCCC
1 ATGAAAGATTTAAGCCTAGTTTA-CTGGCATCTC
* *
22203011 AT----GATCTAAGCCTAGTATTAACTAGCA-C-C
1 ATGAAAGATTTAAGCCTAGT-TT-ACTGGCATCTC
* * * *
22203040 AATGGAAAACATTTAAGGCC-AGTTTGGCTAGCAT-TA
1 -AT-G-AAAGATTTAA-GCCTAGTTT-ACTGGCATCTC
* * *
22203076 ATGAAAGATTTAAGTC-AGTTTGACTGGTATC-A
1 ATGAAAGATTTAAGCCTAGTTT-ACTGGCATCTC
* * *
22203108 ATGAAAGATTTAAGCCTAATTTGATTGGCATC-A
1 ATGAAAGATTTAAGCCTAGTTT-ACTGGCATCTC
22203141 ATGAAAGATTTAAGCC
1 ATGAAAGATTTAAGCC
22203157 CATATTACCT
Statistics
Matches: 392, Mismatches: 65, Indels: 101
0.70 0.12 0.18
Matches are distributed among these distances:
29 47 0.12
30 21 0.05
31 19 0.05
32 55 0.14
33 91 0.23
34 23 0.06
35 117 0.30
36 14 0.04
37 5 0.01
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.31
Consensus pattern (33 bp):
ATGAAAGATTTAAGCCTAGTTTACTGGCATCTC
Found at i:22202841 original size:62 final size:64
Alignment explanation
Indices: 22202539--22202849 Score: 177
Period size: 66 Copynumber: 4.8 Consensus size: 64
22202529 TTTAAGCTAG
* * *
22202539 TTTAACTAG-CACATCATGAAAAGATTTAAGCCTAGTTTAGTTGGCACCT-AGGTTTTAAGCACA
1 TTTAACT-GCCACAT-ATGAAAAGATTTAAGCCTAGTTTAGTTGGCACCTCATGCTTTAAGCCCA
22202602 A
64 A
** ** * *
22202603 TTTAGTTGGTAC-TAATG-AAA-A-TTAAGCCTAGTTTA-TCTGGCATCTCATGAAAAGATTTAA
1 TTTAACTGCCACAT-ATGAAAAGATTTAAGCCTAGTTTAGT-TGGCACCTCAT-----GCTTTAA
*
22202663 G-CCAG
59 GCCCAA
* * * *
22202668 TTTGA-TAG-CATCA-ATG-AAAGATTTAAGCCTAGTTTAGCTGGCACATCATGAAAAGATTTAA
1 TTTAACT-GCCA-CATATGAAAAGATTTAAGCCTAGTTTAGTTGGCACCTCAT-----GCTTTAA
22202729 GCCCAA
59 GCCCAA
* * *
22202735 TTTAGCTGGCACATTATGAAAAGATTTACGCCTAGTTTAGTTGGCACC-CATGCTTTAAGCCCAA
1 TTTAACTGCCACA-TATGAAAAGATTTAAGCCTAGTTTAGTTGGCACCTCATGCTTTAAGCCCAA
*
22202799 TATTAACTGCCAACA-ATG-AAA-ATTTAAGCCTAGTTTATTTGGCACCTCATG
1 T-TTAACTGCC-ACATATGAAAAGATTTAAGCCTAGTTTAGTTGGCACCTCATG
22202850 AAAAGATTTA
Statistics
Matches: 198, Mismatches: 26, Indels: 47
0.73 0.10 0.17
Matches are distributed among these distances:
59 1 0.01
60 21 0.11
61 2 0.01
62 26 0.13
63 12 0.06
64 31 0.16
65 15 0.08
66 46 0.23
67 9 0.05
68 3 0.02
69 6 0.03
70 26 0.13
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (64 bp):
TTTAACTGCCACATATGAAAAGATTTAAGCCTAGTTTAGTTGGCACCTCATGCTTTAAGCCCAA
Found at i:22202861 original size:35 final size:35
Alignment explanation
Indices: 22202335--22202981 Score: 302
Period size: 35 Copynumber: 19.7 Consensus size: 35
22202325 TGGCACCAGA
* * *
22202335 ATTTAAGCCCAATTTAGTTGGCACCTCATGAAAAG
1 ATTTAAGCCTAGTTTAGCTGGCACCTCATGAAAAG
* * * ** *
22202370 AATTAAGCCCA-ATTAATTGGCACATCATGAAAAG
1 ATTTAAGCCTAGTTTAGCTGGCACCTCATGAAAAG
22202404 ATTTAAGCCTAGTTTAGCTGGCACC-CA-G----G
1 ATTTAAGCCTAGTTTAGCTGGCACCTCATGAAAAG
* * * * *
22202433 TTTTAAGCCCAATATTAACTGGCACC-AATG-AAA-
1 ATTTAAGCCTAGT-TTAGCTGGCACCTCATGAAAAG
* * * * * *
22202466 ATTTAAGCCTAATTTGGCTAGTA-ATAATG-AAAG
1 ATTTAAGCCTAGTTTAGCTGGCACCTCATGAAAAG
*
22202499 ATTTAAGCCTAG---A-TTGGCA--TCAAT-AAAAG
1 ATTTAAGCCTAGTTTAGCTGGCACCTC-ATGAAAAG
* * *
22202528 ATTTAAG-CTAGTTTAACTAGCACATCATGAAAAG
1 ATTTAAGCCTAGTTTAGCTGGCACCTCATGAAAAG
*
22202562 ATTTAAGCCTAGTTTAGTTGGCACCT-A-G----G
1 ATTTAAGCCTAGTTTAGCTGGCACCTCATGAAAAG
* * * * *
22202591 TTTTAAGCAC-AATTTAGTTGGTA-CTAATG-AAA-
1 ATTTAAGC-CTAGTTTAGCTGGCACCTCATGAAAAG
* *
22202623 A-TTAAGCCTAGTTTATCTGGCATCTCATGAAAAG
1 ATTTAAGCCTAGTTTAGCTGGCACCTCATGAAAAG
* *
22202657 ATTTAAGCC-AGTTT-GATAGCA--TCAATG-AAAG
1 ATTTAAGCCTAGTTTAGCTGGCACCTC-ATGAAAAG
*
22202688 ATTTAAGCCTAGTTTAGCTGGCACATCATGAAAAG
1 ATTTAAGCCTAGTTTAGCTGGCACCTCATGAAAAG
* * * *
22202723 ATTTAAGCCCAATTTAGCTGGCACATTATGAAAAG
1 ATTTAAGCCTAGTTTAGCTGGCACCTCATGAAAAG
* *
22202758 ATTTACGCCTAGTTTAGTTGGCACC-CAT-----G
1 ATTTAAGCCTAGTTTAGCTGGCACCTCATGAAAAG
* * * * * * *
22202787 CTTTAAGCCCAATATTAACTGCCAAC-AATG-AAA-
1 ATTTAAGCCTAGT-TTAGCTGGCACCTCATGAAAAG
**
22202820 ATTTAAGCCTAGTTTATTTGGCACCTCATGAAAAG
1 ATTTAAGCCTAGTTTAGCTGGCACCTCATGAAAAG
* * *
22202855 ATTTAAGCCTAGTTT-GACTGACA-TTAAT-AAAAG
1 ATTTAAGCCTAGTTTAG-CTGGCACCTCATGAAAAG
* *
22202888 TTTTAAGCCTAGTTT-G--GCCACCATCAATG-AAAG
1 ATTTAAGCCTAGTTTAGCTGGCACC-TC-ATGAAAAG
* * * *
22202921 ATTTAAG-CTCGTTTTAGCTGTCACATTATGAAAAG
1 ATTTAAGCCTAG-TTTAGCTGGCACCTCATGAAAAG
*
22202956 ATTTAAGCCTAGTTTATCTGGCACCT
1 ATTTAAGCCTAGTTTAGCTGGCACCT
22202982 AGGATTTAAG
Statistics
Matches: 466, Mismatches: 92, Indels: 108
0.70 0.14 0.16
Matches are distributed among these distances:
28 7 0.02
29 57 0.12
30 28 0.06
31 32 0.07
32 42 0.09
33 86 0.18
34 67 0.14
35 140 0.30
36 7 0.02
ACGTcount: A:0.35, C:0.17, G:0.17, T:0.31
Consensus pattern (35 bp):
ATTTAAGCCTAGTTTAGCTGGCACCTCATGAAAAG
Found at i:22202926 original size:33 final size:33
Alignment explanation
Indices: 22202812--22202928 Score: 100
Period size: 33 Copynumber: 3.5 Consensus size: 33
22202802 TAACTGCCAA
22202812 CAATGAAA-ATTTAAGCCTAGTTTATTTGG-CACC-T
1 CAATGAAAGATTTAAGCCTAG----TTTGGCCACCAT
* *
22202846 C-ATGAAAAGATTTAAGCCTAGTTTGACTGA-CAT
1 CAATG-AAAGATTTAAGCCTAGTTTGGC-CACCAT
* * *
22202879 TAATAAAAGTTTTAAGCCTAGTTTGGCCACCAT
1 CAATGAAAGATTTAAGCCTAGTTTGGCCACCAT
22202912 CAATGAAAGATTTAAGC
1 CAATGAAAGATTTAAGC
22202929 TCGTTTTAGC
Statistics
Matches: 66, Mismatches: 10, Indels: 15
0.73 0.11 0.16
Matches are distributed among these distances:
31 4 0.06
32 2 0.03
33 42 0.64
34 6 0.09
35 12 0.18
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (33 bp):
CAATGAAAGATTTAAGCCTAGTTTGGCCACCAT
Found at i:22202947 original size:68 final size:64
Alignment explanation
Indices: 22202640--22202970 Score: 172
Period size: 68 Copynumber: 5.0 Consensus size: 64
22202630 CTAGTTTATC
* *
22202640 TGGCATCTCATGAAAAGATTTAAGCC-AGTTTGA-T-AGCATCAATG-AAAGATTTAAGCCTAGT
1 TGGCACCTCATGAAAAGATTTAAGCCTAGTTTGACTGA-CAT-TATGAAAAGATTTAAGCCTAG-
22202701 TT
63 TT
* * * *
22202703 AGCTGGCACATCATGAAAAGATTTAAGCCCAATTT-AGCTGGCACATTATGAAAAGATTTACGCC
1 ---TGGCACCTCATGAAAAGATTTAAGCCTAGTTTGA-CT-G-ACATTATGAAAAGATTTAAGCC
22202767 TAGTTTAGT
60 TAG--T--T
* * * * * **
22202776 TGGCACC-CAT-----GCTTTAAGCCCAATATTAACTGCCAACAATG-AAA-ATTTAAGCCTAGT
1 TGGCACCTCATGAAAAGATTTAAGCCTAGT-TTGACTGAC-ATTATGAAAAGATTTAAGCCTAG-
22202833 TTATT
63 ---TT
*
22202838 TGGCACCTCATGAAAAGATTTAAGCCTAGTTTGACTGACATTAAT-AAAAGTTTTAAGCCTAGTT
1 TGGCACCTCATGAAAAGATTTAAGCCTAGTTTGACTGACATT-ATGAAAAGATTTAAGCCTAGTT
* *
22202902 TGGCCACCATCAATG-AAAGATTTAAG-CTCGTTTTAGCTGTCACATTATGAAAAGATTTAAGCC
1 TGG-CACC-TC-ATGAAAAGATTTAAGCCTAGTTTGA-CTG--ACATTATGAAAAGATTTAAGCC
22202965 TAGTT
60 TAGTT
22202970 T
1 T
22202971 ATCTGGCACC
Statistics
Matches: 211, Mismatches: 23, Indels: 60
0.72 0.08 0.20
Matches are distributed among these distances:
62 19 0.09
63 7 0.03
64 25 0.12
65 15 0.07
66 43 0.20
67 21 0.10
68 47 0.22
69 6 0.03
70 24 0.11
71 3 0.01
73 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (64 bp):
TGGCACCTCATGAAAAGATTTAAGCCTAGTTTGACTGACATTATGAAAAGATTTAAGCCTAGTT
Found at i:22202993 original size:198 final size:193
Alignment explanation
Indices: 22202516--22202993 Score: 581
Period size: 198 Copynumber: 2.4 Consensus size: 193
22202506 CCTAGATTGG
* * * *
22202516 CATCAATAAAAGATTTAAGCTAGTTTAACTAGCACATCATGAAAAGATTTAAGCCTAGTTTAGTT
1 CATCAATGAAAGATTTAAGCTCGTTTAGCT-GCACATTATGAAAAGATTTAAGCCTAGTTTAGTT
* * ** ** *
22202581 GGCACCTAGGTTTTAAGCACAATTTAGTTGGTACTAATGAAAATTAAGCCTAGTTTATCTGGCAT
65 GGCACCTAGGATTTAAGCCCAATTTAACTGCAACTAATGAAAATTAAGCCTAGTTTATCTGGCAC
* *
22202646 CTCATGAAAAGATTTAAGCCAGTTTGATAGCATCAATGAAAGATTTAAGCCTAGTTTAGCTGGCA
130 CTCATGAAAAGATTTAAGCCAGTTTGATAGCATCAATAAAAGATTTAAGCCTAGTTTAGC-GCCA
* * *
22202711 CATC-ATGAAAAGATTTAAGCCCAATTTAGCTGGCACATTATGAAAAGATTTACGCCTAGTTTAG
1 CATCAATG-AAAGATTTAAGCTC-GTTTAGCT-GCACATTATGAAAAGATTTAAGCCTAGTTTAG
* * * *
22202775 TTGGCACCCATGCTTTAAGCCCAATATTAACTGCCAAC-AATGAAAATTTAAGCCTAGTTTATTT
63 TTGGCACCTAGGATTTAAGCCCAAT-TTAACTG-CAACTAATGAAAA-TTAAGCCTAGTTTATCT
* *
22202839 GGCACCTCATGAAAAGATTTAAGCCTAGTTTGACT-GACATTAATAAAAGTTTTAAGCCTAGTTT
125 GGCACCTCATGAAAAGATTTAAGCC-AGTTTGA-TAG-CATCAATAAAAGATTTAAGCCTAGTTT
22202903 -G-GCCA
187 AGCGCCA
22202908 CCATCAATGAAAGATTTAAGCTCGTTTTAGCTGTCACATTATGAAAAGATTTAAGCCTAGTTTA-
1 -CATCAATGAAAGATTTAAGCTCG-TTTAGCTG-CACATTATGAAAAGATTTAAGCCTAGTTTAG
22202972 TCTGGCACCTAGGATTTAAGCC
63 T-TGGCACCTAGGATTTAAGCC
22202994 TAGATTAGCT
Statistics
Matches: 242, Mismatches: 28, Indels: 23
0.83 0.10 0.08
Matches are distributed among these distances:
194 2 0.01
195 16 0.07
196 57 0.24
197 18 0.07
198 112 0.46
199 12 0.05
200 25 0.10
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Consensus pattern (193 bp):
CATCAATGAAAGATTTAAGCTCGTTTAGCTGCACATTATGAAAAGATTTAAGCCTAGTTTAGTTG
GCACCTAGGATTTAAGCCCAATTTAACTGCAACTAATGAAAATTAAGCCTAGTTTATCTGGCACC
TCATGAAAAGATTTAAGCCAGTTTGATAGCATCAATAAAAGATTTAAGCCTAGTTTAGCGCCA
Found at i:22203088 original size:33 final size:32
Alignment explanation
Indices: 22203050--22203156 Score: 133
Period size: 33 Copynumber: 3.3 Consensus size: 32
22203040 AATGGAAAAC
* * *
22203050 ATTTAAGGCCAGTTTGGCTAGCATTAATGAAAG
1 ATTTAA-GCCAGTTTGACTGGCATCAATGAAAG
* *
22203083 ATTTAAGTCAGTTTGACTGGTATCAATGAAAG
1 ATTTAAGCCAGTTTGACTGGCATCAATGAAAG
* *
22203115 ATTTAAGCCTAATTTGATTGGCATCAATGAAAG
1 ATTTAAGCC-AGTTTGACTGGCATCAATGAAAG
22203148 ATTTAAGCC
1 ATTTAAGCC
22203157 CATATTACCT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
32 29 0.45
33 35 0.55
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.33
Consensus pattern (32 bp):
ATTTAAGCCAGTTTGACTGGCATCAATGAAAG
Found at i:22203221 original size:66 final size:65
Alignment explanation
Indices: 22203106--22203277 Score: 183
Period size: 65 Copynumber: 2.6 Consensus size: 65
22203096 TGACTGGTAT
* * * * *
22203106 CAATGAAAGATTTAAGCCTAATTTGA-TTGGCA-TCAATGAAAGATTTAAGCCCATATTACCTGG
1 CAATG-AAGATTTAAG-CTTAGTTGAGTTAGCACTCAATGAAAAATATAAGCCCA-ATTACCTGG
22203169 C-C
63 CAC
*
22203171 TTAATGAAGATTTAAGCTTAGTTGAGTTAGCACTCAATGAAAAATATAAGCCCAATTACCTGGCA
1 -CAATGAAGATTTAAGCTTAGTTGAGTTAGCACTCAATGAAAAATATAAGCCCAATTACCTGGCA
22203236 C
65 C
* * *
22203237 CAAAGAAAATTTAAGCCTAGTTGAAG-TAGCACT-AATGAAAA
1 CAATGAAGATTTAAGCTTAGTTG-AGTTAGCACTCAATGAAAA
22203278 TTTCATCTTG
Statistics
Matches: 92, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
64 15 0.16
65 51 0.55
66 26 0.28
ACGTcount: A:0.40, C:0.16, G:0.17, T:0.27
Consensus pattern (65 bp):
CAATGAAGATTTAAGCTTAGTTGAGTTAGCACTCAATGAAAAATATAAGCCCAATTACCTGGCAC
Found at i:22203278 original size:32 final size:32
Alignment explanation
Indices: 22203172--22203280 Score: 87
Period size: 32 Copynumber: 3.4 Consensus size: 32
22203162 TACCTGGCCT
* *
22203172 TAATGAAGATTTAAGCTTAGTTG-AGTTAGCAC
1 TAATGAAAATTTAAGCCTAGTTGAAG-TAGCAC
* * * ** *
22203204 TCAATGAAAAATATAAGCCCAATT-ACCTGGCAC
1 T-AATG-AAAATTTAAGCCTAGTTGAAGTAGCAC
* *
22203237 CAAAGAAAATTTAAGCCTAGTTGAAGTAGCAC
1 TAATGAAAATTTAAGCCTAGTTGAAGTAGCAC
22203269 TAATGAAAATTT
1 TAATGAAAATTT
22203281 CATCTTGATC
Statistics
Matches: 55, Mismatches: 18, Indels: 8
0.68 0.22 0.10
Matches are distributed among these distances:
31 14 0.25
32 20 0.36
33 9 0.16
34 12 0.22
ACGTcount: A:0.41, C:0.15, G:0.17, T:0.28
Consensus pattern (32 bp):
TAATGAAAATTTAAGCCTAGTTGAAGTAGCAC
Found at i:22203413 original size:72 final size:72
Alignment explanation
Indices: 22203305--22203458 Score: 200
Period size: 72 Copynumber: 2.1 Consensus size: 72
22203295 TTTATTTTTC
* *
22203305 TTTTAACTTATGGTGTTGTCCCAATCATTTTTTATTTTTCGACTTGGAATATTGTCCGAGTCGTT
1 TTTTAACTTATGATGTTGTCCCAATCATTTTTTATTTTTCGACTTGGAATATTGTCCGAGTCATT
*
22203370 CTTTATT
66 CTGTATT
* ** * * * * *
22203377 TTTTAACTTTTGATGTTGTTTCAGTCATTTTTTATTTTTTGACTTGTAGTATTGTCCTAGTCATT
1 TTTTAACTTATGATGTTGTCCCAATCATTTTTTATTTTTCGACTTGGAATATTGTCCGAGTCATT
22203442 CTGTATT
66 CTGTATT
*
22203449 TTCTAACTTA
1 TTTTAACTTA
22203459 CGTTATTGTG
Statistics
Matches: 69, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.18, C:0.14, G:0.14, T:0.55
Consensus pattern (72 bp):
TTTTAACTTATGATGTTGTCCCAATCATTTTTTATTTTTCGACTTGGAATATTGTCCGAGTCATT
CTGTATT
Found at i:22203439 original size:36 final size:36
Alignment explanation
Indices: 22203320--22203450 Score: 104
Period size: 36 Copynumber: 3.6 Consensus size: 36
22203310 ACTTATGGTG
* * * * * *
22203320 TTGTCCCAATCATTTTTTATTTTTCGACTTGGAATA
1 TTGTCCTAGTCATTCTTTATTTTTTGACTTGTAGTA
* * * * *
22203356 TTGTCCGAGTCGTTCTTTATTTTTTAACTT-TTGATG
1 TTGTCCTAGTCATTCTTTATTTTTTGACTTGTAG-TA
* *
22203392 TTGT-TTCAGTCATTTTTTATTTTTTGACTTGTAGTA
1 TTGTCCT-AGTCATTCTTTATTTTTTGACTTGTAGTA
*
22203428 TTGTCCTAGTCATTCTGTATTTT
1 TTGTCCTAGTCATTCTTTATTTT
22203451 CTAACTTACG
Statistics
Matches: 71, Mismatches: 20, Indels: 8
0.72 0.20 0.08
Matches are distributed among these distances:
36 68 0.96
37 3 0.04
ACGTcount: A:0.17, C:0.14, G:0.14, T:0.56
Consensus pattern (36 bp):
TTGTCCTAGTCATTCTTTATTTTTTGACTTGTAGTA
Found at i:22203487 original size:12 final size:12
Alignment explanation
Indices: 22203470--22203591 Score: 71
Period size: 11 Copynumber: 10.5 Consensus size: 12
22203460 GTTATTGTGA
22203470 AAAAAAACAAAC
1 AAAAAAACAAAC
*
22203482 -AAAAAATAAA-
1 AAAAAAACAAAC
22203492 AAAAAAACAAA-
1 AAAAAAACAAAC
*
22203503 ACAAAAACCAAAC
1 A-AAAAAACAAAC
*
22203516 AAACAAACAAA-
1 AAAAAAACAAAC
22203527 AACACAAACACAAAC
1 AA-A-AAA-ACAAAC
**
22203542 AAAAAAA-TGA-
1 AAAAAAACAAAC
** **
22203552 AAATGAA-AATG
1 AAAAAAACAAAC
22203563 AAAAAAA-AAAC
1 AAAAAAACAAAC
22203574 AAAAAAACAAAC
1 AAAAAAACAAAC
22203586 AAAAAA
1 AAAAAA
22203592 GCGTTTTAAA
Statistics
Matches: 84, Mismatches: 17, Indels: 18
0.71 0.14 0.15
Matches are distributed among these distances:
10 5 0.06
11 36 0.43
12 29 0.35
13 6 0.07
14 6 0.07
15 2 0.02
ACGTcount: A:0.80, C:0.14, G:0.02, T:0.03
Consensus pattern (12 bp):
AAAAAAACAAAC
Found at i:22203510 original size:6 final size:6
Alignment explanation
Indices: 22203472--22203590 Score: 61
Period size: 6 Copynumber: 19.8 Consensus size: 6
22203462 TATTGTGAAA
* *
22203472 AAAAAC AAACA- AAAAAT AAAAA- AAAAAC -AAAAC AAAAACC AAACAA-
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC AAAAA-C AAA-AAC
* * * * * **
22203518 ACAAAC AAAAAC ACAAAC ACAAAC AAAAAA ATGAAAATG AAAATG AAAAA-
1 AAAAAC AAAAAC AAAAAC AAAAAC AAAAAC A--AAAA-C AAAAAC AAAAAC
22203568 AAAAAC AAAAA- AACAAAC AAAAA
1 AAAAAC AAAAAC AA-AAAC AAAAA
22203591 AGCGTTTTAA
Statistics
Matches: 91, Mismatches: 10, Indels: 24
0.73 0.08 0.19
Matches are distributed among these distances:
5 23 0.25
6 52 0.57
7 9 0.10
8 6 0.07
9 1 0.01
ACGTcount: A:0.80, C:0.14, G:0.03, T:0.03
Consensus pattern (6 bp):
AAAAAC
Found at i:22203515 original size:5 final size:4
Alignment explanation
Indices: 22203474--22203544 Score: 55
Period size: 4 Copynumber: 18.8 Consensus size: 4
22203464 TTGTGAAAAA
* * *
22203474 AAAC AAAC AAA- AAAT AAA- AAAA AAAC AAAAC AAA- AACC AAAC AAAC
1 AAAC AAAC AAAC AAAC AAAC AAAC AAAC -AAAC AAAC AAAC AAAC AAAC
22203520 AAAC AAA- AACAC AAAC --AC AAAC AAA
1 AAAC AAAC AA-AC AAAC AAAC AAAC AAA
22203545 AAAATGAAAA
Statistics
Matches: 56, Mismatches: 3, Indels: 16
0.75 0.04 0.21
Matches are distributed among these distances:
2 2 0.04
3 10 0.18
4 38 0.68
5 6 0.11
ACGTcount: A:0.79, C:0.20, G:0.00, T:0.01
Consensus pattern (4 bp):
AAAC
Found at i:22209519 original size:17 final size:17
Alignment explanation
Indices: 22209499--22209531 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22209489 TTTGAAAATT
22209499 TAAGAAA-ACAAAAATAA
1 TAAGAAAGA-AAAAATAA
22209516 TAAGAAAGAAAAAATA
1 TAAGAAAGAAAAAATA
22209532 TGGCTTTGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 14 0.93
18 1 0.07
ACGTcount: A:0.76, C:0.03, G:0.09, T:0.12
Consensus pattern (17 bp):
TAAGAAAGAAAAAATAA
Found at i:22209838 original size:16 final size:16
Alignment explanation
Indices: 22209809--22209842 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
22209799 CAAACATGTT
*
22209809 TATTTAGAATTAATAA
1 TATTTAGAAATAATAA
*
22209825 TATTTTGAAATAATAA
1 TATTTAGAAATAATAA
22209841 TA
1 TA
22209843 ATAATAATAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.06, T:0.44
Consensus pattern (16 bp):
TATTTAGAAATAATAA
Found at i:22210050 original size:25 final size:22
Alignment explanation
Indices: 22210006--22210055 Score: 55
Period size: 25 Copynumber: 2.1 Consensus size: 22
22209996 GCTTAATTAC
*
22210006 TTAAATAATATAAGTAATCTCTT
1 TTAAATAATATAAATAATCT-TT
*
22210029 TTAAACTACATATAAATGATCTTT
1 TTAAA-TA-ATATAAATAATCTTT
22210053 TTA
1 TTA
22210056 CTCAATGTGG
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
23 5 0.22
24 7 0.30
25 11 0.48
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (22 bp):
TTAAATAATATAAATAATCTTT
Found at i:22212839 original size:80 final size:80
Alignment explanation
Indices: 22212677--22212826 Score: 192
Period size: 80 Copynumber: 1.9 Consensus size: 80
22212667 GAATCAATTA
*
22212677 CATCAAAAGAAAGACATTTGATTTGCATGTTGCAAAAACAAAAAGAGTCTTCACATTCACATCAC
1 CATCAAAAGAAAGACATTTGATTTACATGTTGCAAAAACAAAAAGAGTCTTCACATTCACATCAC
* *
22212742 TTGCGCTTACATGTG
66 TTACACTTACATGTG
* * * * * ** **
22212757 CATCATAAGAAAGGCATTTGATTTACGTGTTGTAAAAACCAAAAGAGTCTTTGCATTTGCATCAC
1 CATCAAAAGAAAGACATTTGATTTACATGTTGCAAAAACAAAAAGAGTCTTCACATTCACATCAC
22212822 TTACA
66 TTACA
22212827 TTTGCACTTG
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
80 58 1.00
ACGTcount: A:0.37, C:0.19, G:0.15, T:0.29
Consensus pattern (80 bp):
CATCAAAAGAAAGACATTTGATTTACATGTTGCAAAAACAAAAAGAGTCTTCACATTCACATCAC
TTACACTTACATGTG
Found at i:22213435 original size:36 final size:36
Alignment explanation
Indices: 22213397--22213664 Score: 203
Period size: 36 Copynumber: 7.5 Consensus size: 36
22213387 GTTGGTGCTA
* *
22213397 TCCTAGTTATCTTTATTTTTTTAACTTATGGTGTTA
1 TCCTAGTCATCTTTATTTTTTTAACTTATGGTGTTG
* * *
22213433 TCC-CGATCTTCTTTA-TTTTTTAACTTGTGGTGTTG
1 TCCTAG-TCATCTTTATTTTTTTAACTTATGGTGTTG
* *
22213468 T-CTTGATCATATTTATTTTTTTAAC-TATTGGTGTTG
1 TCCTAG-TCATCTTTATTTTTTTAACTTA-TGGTGTTG
* * * *
22213504 TCTTGGTCATCTTTATTTTTTT-ACCTATAGTGTTG
1 TCCTAGTCATCTTTATTTTTTTAACTTATGGTGTTG
* * * * *
22213539 TCCTGGTTATCTTTA-TTTTTTAACTTATGTTATTA
1 TCCTAGTCATCTTTATTTTTTTAACTTATGGTGTTG
* * * * *
22213574 TCTTGGTCATATTTATTTTTTTGATCGTTA--GTGCTG
1 TCCTAGTCATCTTTATTTTTTT-AAC-TTATGGTGTTG
**
22213610 T-CTCAGTCATCTTTATTTTTTTAACTTACAGTGTTG
1 TCCT-AGTCATCTTTATTTTTTTAACTTATGGTGTTG
*
22213646 TCCTAATCATCTTTATTTT
1 TCCTAGTCATCTTTATTTT
22213665 ATGACTTGCA
Statistics
Matches: 184, Mismatches: 34, Indels: 28
0.75 0.14 0.11
Matches are distributed among these distances:
34 10 0.05
35 75 0.41
36 90 0.49
37 6 0.03
38 3 0.02
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (36 bp):
TCCTAGTCATCTTTATTTTTTTAACTTATGGTGTTG
Found at i:22213464 original size:35 final size:35
Alignment explanation
Indices: 22213405--22213664 Score: 195
Period size: 35 Copynumber: 7.3 Consensus size: 35
22213395 TATCCTAGTT
* *
22213405 ATCTTTATTTTTTTAACTTATGGTGTTATCCCGATC
1 ATCTTTA-TTTTTTAACTTATGGTGTTGTCCTGATC
* * *
22213441 TTCTTTATTTTTTAACTTGTGGTGTTGTCTTGATC
1 ATCTTTATTTTTTAACTTATGGTGTTGTCCTGATC
* * *
22213476 ATATTTATTTTTTTAAC-TATTGGTGTTGTCTTGGTC
1 ATCTTTA-TTTTTTAACTTA-TGGTGTTGTCCTGATC
* * * * *
22213512 ATCTTTATTTTTTTACCTATAGTGTTGTCCTGGTT
1 ATCTTTATTTTTTAACTTATGGTGTTGTCCTGATC
* * * * *
22213547 ATCTTTATTTTTTAACTTATGTTATTATCTTGGTC
1 ATCTTTATTTTTTAACTTATGGTGTTGTCCTGATC
* * * *
22213582 ATATTTATTTTTTTGATCGTTA--GTGCTGT-CTCAGTC
1 ATCTTTA-TTTTTT-AAC-TTATGGTGTTGTCCTGA-TC
** *
22213618 ATCTTTATTTTTTTAACTTACAGTGTTGTCCTAATC
1 ATCTTTA-TTTTTTAACTTATGGTGTTGTCCTGATC
22213654 ATCTTTATTTT
1 ATCTTTATTTT
22213665 ATGACTTGCA
Statistics
Matches: 179, Mismatches: 35, Indels: 21
0.76 0.15 0.09
Matches are distributed among these distances:
34 3 0.02
35 91 0.51
36 77 0.43
37 5 0.03
38 3 0.02
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (35 bp):
ATCTTTATTTTTTAACTTATGGTGTTGTCCTGATC
Found at i:22213486 original size:71 final size:71
Alignment explanation
Indices: 22213408--22213664 Score: 189
Period size: 71 Copynumber: 3.6 Consensus size: 71
22213398 CCTAGTTATC
* * * * *
22213408 TTTATTTTTTTAACTTATGGTGTTATCCCGATCTTCTTTATTTTTTAACTTGTGGTGTTGTCTTG
1 TTTATTTTTTTAACTTATGGTGTTATCCCGATCATCTTTATTTTTTAACCTATAGTGTTGTCCTG
22213473 ATCATA
66 ATCATA
* ** * *
22213479 TTTATTTTTTTAAC-TATTGGTGTTGTCTTGGTCATCTTTATTTTTTTACCTATAGTGTTGTCCT
1 TTTATTTTTTTAACTTA-TGGTGTTATCCCGATCATCTTTATTTTTTAACCTATAGTGTTGTCCT
* * *
22213543 GGTTATC
65 GATCATA
* * ** * * * * *
22213550 TTTA-TTTTTTAACTTATGTTATTATCTTGGTCATATTTATTTTTTTGATCGT-TAGTGCTGT-C
1 TTTATTTTTTTAACTTATGGTGTTATCCCGATCATCTTTA-TTTTTT-AACCTATAGTGTTGTCC
* *
22213612 TCAGTCATC
64 TGA-TCATA
** * **
22213621 TTTATTTTTTTAACTTACAGTGTTGTCCTAATCATCTTTATTTT
1 TTTATTTTTTTAACTTATGGTGTTATCCCGATCATCTTTATTTT
22213665 ATGACTTGCA
Statistics
Matches: 147, Mismatches: 33, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
70 32 0.22
71 87 0.59
72 28 0.19
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (71 bp):
TTTATTTTTTTAACTTATGGTGTTATCCCGATCATCTTTATTTTTTAACCTATAGTGTTGTCCTG
ATCATA
Found at i:22213578 original size:106 final size:107
Alignment explanation
Indices: 22213405--22213664 Score: 310
Period size: 106 Copynumber: 2.4 Consensus size: 107
22213395 TATCCTAGTT
* * * * * *
22213405 ATCTTTATTTTTTTAACTTATGGTGTTATCCCGATCT-TCTTTATTTTTTAACTTGTGGTGTTGT
1 ATCTTTATTTTTTTAACTTATAGTGTTGTCCTGAT-TATCTTTATTTTTTAACTTATGGTATTAT
* * **
22213469 CTTGATCATATTTATTTTTTTAA-CTATTGGTGTTGTCTTGGTC
65 CTTGATCATATTTATTTTTTTAATC-ATTAGTGCTGTCTCAGTC
* * *
22213512 ATCTTTATTTTTTT-ACCTATAGTGTTGTCCTGGTTATCTTTATTTTTTAACTTATGTTATTATC
1 ATCTTTATTTTTTTAACTTATAGTGTTGTCCTGATTATCTTTATTTTTTAACTTATGGTATTATC
* * *
22213576 TTGGTCATATTTATTTTTTTGATCGTTAGTGCTGTCTCAGTC
66 TTGATCATATTTATTTTTTTAATCATTAGTGCTGTCTCAGTC
* * *
22213618 ATCTTTATTTTTTTAACTTACAGTGTTGTCCTAATCATCTTTATTTT
1 ATCTTTATTTTTTTAACTTATAGTGTTGTCCTGATTATCTTTATTTT
22213665 ATGACTTGCA
Statistics
Matches: 129, Mismatches: 21, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
105 1 0.01
106 86 0.67
107 42 0.33
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (107 bp):
ATCTTTATTTTTTTAACTTATAGTGTTGTCCTGATTATCTTTATTTTTTAACTTATGGTATTATC
TTGATCATATTTATTTTTTTAATCATTAGTGCTGTCTCAGTC
Found at i:22213913 original size:37 final size:35
Alignment explanation
Indices: 22213837--22213980 Score: 146
Period size: 36 Copynumber: 4.0 Consensus size: 35
22213827 GGTCACTCTA
* * *
22213837 TTTTTTGACCTATGATGTTATCTCGATCATCTTTAT
1 TTTTTTGA-CTATGGTGTTGTCTCGATCATATTTAT
* *
22213873 TTTTTT-ATTTATGGTGTTGTCCCGATCATATTTACT
1 TTTTTTGA-CTATGGTGTTGTCTCGATCATATTTA-T
* * *
22213909 TTTTTTGGACTATGGTGTTATTTCGATCATCTTTAT
1 TTTTTT-GACTATGGTGTTGTCTCGATCATATTTAT
* *
22213945 TTTTTTGACCTAAGATGTTGTCTCGATCATATTTAT
1 TTTTTTGA-CTATGGTGTTGTCTCGATCATATTTAT
22213981 CTTTCCTATC
Statistics
Matches: 88, Mismatches: 16, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
35 24 0.27
36 42 0.48
37 21 0.24
38 1 0.01
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.53
Consensus pattern (35 bp):
TTTTTTGACTATGGTGTTGTCTCGATCATATTTAT
Found at i:22213928 original size:72 final size:74
Alignment explanation
Indices: 22213837--22213984 Score: 203
Period size: 72 Copynumber: 2.0 Consensus size: 74
22213827 GGTCACTCTA
** * *
22213837 TTTTTTGACCTATGATGTTATCTCGATCATCTTTATTTTTTT-ATTTATGGTGTTGTCCCGATCA
1 TTTTTTGACCTATGATGTTATCTCGATCATCTTTATTTTTTTGACCTAAGATGTTGTCCCGATCA
22213901 TATTTA-CT
66 TATTTATCT
* * *
22213909 TTTTTTGGA-CTATGGTGTTATTTCGATCATCTTTATTTTTTTGACCTAAGATGTTGTCTCGATC
1 TTTTTT-GACCTATGATGTTATCTCGATCATCTTTATTTTTTTGACCTAAGATGTTGTCCCGATC
22213973 ATATTTATCT
65 ATATTTATCT
22213983 TT
1 TT
22213985 CCTATCATTG
Statistics
Matches: 66, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
72 37 0.56
73 25 0.38
74 4 0.06
ACGTcount: A:0.18, C:0.14, G:0.14, T:0.54
Consensus pattern (74 bp):
TTTTTTGACCTATGATGTTATCTCGATCATCTTTATTTTTTTGACCTAAGATGTTGTCCCGATCA
TATTTATCT
Found at i:22214102 original size:36 final size:36
Alignment explanation
Indices: 22214072--22214141 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
22214062 GTTGGTGCTG
*
22214072 TCCCAATCATATTTGTCTTCTCGACTGTTGGTGTCA
1 TCCCAATCATATTTATCTTCTCGACTGTTGGTGTCA
* * **
22214108 TCCCAATCATTTTTATCTTTTCGACCATTGGTGT
1 TCCCAATCATATTTATCTTCTCGACTGTTGGTGT
22214142 TGTATCGATC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.17, C:0.24, G:0.14, T:0.44
Consensus pattern (36 bp):
TCCCAATCATATTTATCTTCTCGACTGTTGGTGTCA
Found at i:22214473 original size:35 final size:35
Alignment explanation
Indices: 22214434--22214534 Score: 139
Period size: 35 Copynumber: 2.9 Consensus size: 35
22214424 CCTGATCATG
**
22214434 TTTTTTGTCTTGTGGTGTTATCTCAATCATCTTTA
1 TTTTTTGAATTGTGGTGTTATCTCAATCATCTTTA
* *
22214469 TTTTTTGAATTGTGGTATTATCCCAATCATCTTTA
1 TTTTTTGAATTGTGGTGTTATCTCAATCATCTTTA
* *
22214504 TTTTTTCAAATTGTGGTGTTATCTCAGTCAT
1 TTTTTT-GAATTGTGGTGTTATCTCAATCAT
22214535 TTTCTTCCAA
Statistics
Matches: 57, Mismatches: 8, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
35 37 0.65
36 20 0.35
ACGTcount: A:0.19, C:0.14, G:0.14, T:0.53
Consensus pattern (35 bp):
TTTTTTGAATTGTGGTGTTATCTCAATCATCTTTA
Found at i:22214658 original size:35 final size:35
Alignment explanation
Indices: 22214619--22214715 Score: 113
Period size: 35 Copynumber: 2.8 Consensus size: 35
22214609 TTTTCAACAT
* * *
22214619 TGATGTTGTTTTGATCATCTTTATTTTTTGACCTA
1 TGATGTTGTCTCGACCATCTTTATTTTTTGACCTA
* *
22214654 TGATGTTGTCTCGACCGTTTTTATTTTTTGACCTA
1 TGATGTTGTCTCGACCATCTTTATTTTTTGACCTA
* * * *
22214689 TGATGTTATCACGATCATATTTATTTT
1 TGATGTTGTCTCGACCATCTTTATTTT
22214716 CCTGACATTA
Statistics
Matches: 52, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
35 52 1.00
ACGTcount: A:0.19, C:0.13, G:0.14, T:0.54
Consensus pattern (35 bp):
TGATGTTGTCTCGACCATCTTTATTTTTTGACCTA
Found at i:22214838 original size:35 final size:34
Alignment explanation
Indices: 22214798--22214925 Score: 93
Period size: 35 Copynumber: 3.7 Consensus size: 34
22214788 TTGACCTGCA
*
22214798 GTGTTATCCTAGTCATCTTTATTTTTAAACTTA-G
1 GTGTTATCCTAGTCATATTTATTTTTAAA-TTACG
*
22214832 GATGTTATTCC-AATCATATTT-TTTTTAAATTACG
1 G-TGTTA-TCCTAGTCATATTTATTTTTAAATTACG
* * * ** *
22214866 GTGTTGTCCT-GATCATTTTTATTTTTTGACCTACA
1 GTGTTATCCTAG-TCATATTTA-TTTTTAAATTACG
* *
22214901 GTGTTATCATAGTCATATTTGTTTT
1 GTGTTATCCTAGTCATATTTATTTT
22214926 CTCGACCATT
Statistics
Matches: 73, Mismatches: 13, Indels: 16
0.72 0.13 0.16
Matches are distributed among these distances:
32 3 0.04
33 14 0.19
34 15 0.21
35 37 0.51
36 4 0.05
ACGTcount: A:0.23, C:0.13, G:0.12, T:0.52
Consensus pattern (34 bp):
GTGTTATCCTAGTCATATTTATTTTTAAATTACG
Found at i:22215153 original size:36 final size:34
Alignment explanation
Indices: 22214631--22215222 Score: 203
Period size: 36 Copynumber: 16.8 Consensus size: 34
22214621 ATGTTGTTTT
* * *
22214631 GATCATCTTTATTTTTTGACCTATGATGTTGTCTC
1 GATCATATTTATTTTTTGACCT-TGGTGTTATCTC
* * * * *
22214666 GACCGTTTTTATTTTTTGACCTATGATGTTATCAC
1 GATCATATTTATTTTTTGACCT-TGGTGTTATCTC
* * * * *
22214701 GATCATATTTATTTTCCTGACATTAGTGTTGTCCC
1 GATCATATTTATTTT-TTGACCTTGGTGTTATCTC
* * * * *
22214736 AATCATATTTATTTTTTCATTCATTGGTGGTATCCC
1 GATCATATTTATTTTTTGA--CCTTGGTGTTATCTC
*
22214772 GATCATCTTTATTTTTTTGACC-TGCAGTGTTATC-C
1 GATCATATTTA-TTTTTTGACCTTG--GTGTTATCTC
* * * *
22214807 TAGTCATCTTTA-TTTTTAAACTTAGGATGTTAT-TCC
1 GA-TCATATTTATTTTTTGACCTT-GG-TGTTATCT-C
* ** *
22214843 AATCATA-TT-TTTTTT-AAATTACGGTGTTGTC-C
1 GATCATATTTATTTTTTGACCTT--GGTGTTATCTC
* ** *
22214875 TGATCATTTTTATTTTTTGACCTACAGTGTTATCATA
1 -GATCATATTTATTTTTTGACCT-TGGTGTTATC-TC
* * *
22214912 G-TCATATTTGTTTTCTCGACCATTGGTGTTGTACT-
1 GATCATATTTATTTT-TTGACC-TTGGTGTTAT-CTC
* * * *
22214947 AATCATATTTACTTTTTCGACCGTTAGTGTTGTC-C
1 GATCATATTTA-TTTTTTGACC-TTGGTGTTATCTC
* * *
22214982 TAATCATCTTTATTTTTTTGACCTATGGTGTTGTAC-C
1 -GATCATATTTA-TTTTTTGACCT-TGGTGTTAT-CTC
* * *
22215019 GATCATCTTTATTTTTTTGACATGTGGTGTTGT-TCC
1 GATCATATTTA-TTTTTTGACCT-TGGTGTTATCT-C
* * * *
22215055 AATCATCTTT-TTTTTT-A-CTTGCAATG-TGTC-C
1 GATCATATTTATTTTTTGACCTTG--GTGTTATCTC
* *
22215086 TGATCATCTTTATTTTTTGACCTATAGTGTTATCTC
1 -GATCATATTTATTTTTTGACCT-TGGTGTTATCTC
* *
22215122 GATCATATTTATTTTTCTGACCATTGGTGTTAACCC
1 GATCATATTTATTTTT-TGACC-TTGGTGTTATCTC
* **
22215158 GGTCATATTTATTTTTCCAACCTATGGTGTTATCTC
1 GATCATATTTATTTTT-TGACCT-TGGTGTTATCTC
* *
22215194 GATTATCTTTATTTTTTGACCTGTGGTGT
1 GATCATATTTATTTTTTGACCT-TGGTGT
22215223 CATCCTGATC
Statistics
Matches: 431, Mismatches: 80, Indels: 92
0.71 0.13 0.15
Matches are distributed among these distances:
31 3 0.01
32 14 0.03
33 23 0.05
34 32 0.07
35 135 0.31
36 208 0.48
37 16 0.04
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (34 bp):
GATCATATTTATTTTTTGACCTTGGTGTTATCTC
Found at i:22215204 original size:211 final size:209
Alignment explanation
Indices: 22214673--22215227 Score: 558
Period size: 211 Copynumber: 2.6 Consensus size: 209
22214663 CTCGACCGTT
* * * **
22214673 TTTATTTTTTGACCTAT-GATGTTATCACGATCATATTTATTTTCCTGA-CATTAGTGTTGTCCC
1 TTTATTTTTTGACCTATAG-TGTTATCTCGATCATATTTATTTTTCTGACCATTGGTGTTAACCC
** * **
22214736 AATCATATTTATTTTTTCATTC-ATTGGTGGTATCCCGATCATCTTTATTTTTTTGACCTGCAGT
65 AATCATATTTA-TTTTTCAACCTA-TGGTGTTAT-CCGATCATCTTTATTTTTTTGACCTGTGGT
*
22214800 GTTATCCTAGTCATCTTTATTTTTAAACTTAGGATGTTATTCCAATCATATTTTTTTTAAATTAC
127 GTTATCCGAGTCATCTTTATTTTTAAACTTAGGATGTTATTCCAATCATATTTTTTTTAAATTAC
** *
22214865 GGTGTTGTCCTGATCATT
192 AATGTTGTCCTGATCATC
* * * *
22214883 TTTATTTTTTGACCTACAGTGTTATCATAG-TCATATTT-GTTTTCTCGACCATTGGTGTTGTA-
1 TTTATTTTTTGACCTATAGTGTTATC-TCGATCATATTTATTTTTCT-GACCATTGGTGTT-AAC
* * * * * *
22214945 CTAATCATATTTACTTTTTCGACCGT-TAGTGTTGTCCTAATCATCTTTATTTTTTTGACCTATG
63 CCAATCATATTTA-TTTTTCAACC-TATGGTGTTATCC-GATCATCTTTATTTTTTTGACCTGTG
* ** * * *
22215009 GTGTTGTACCGA-TCATCTTTATTTTTTTGACATGT-GG-TGTTGTTCCAATCATCTTTTTTTTT
125 GTGTTAT-CCGAGTCATCTTTA-TTTTTAAAC-T-TAGGATGTTATTCCAATCATATTTTTTTTA
* *
22215071 ACTTGCAATG-TGTCCTGATCATC
186 AATTACAATGTTGTCCTGATCATC
*
22215094 TTTATTTTTTGACCTATAGTGTTATCTCGATCATATTTATTTTTCTGACCATTGGTGTTAACCCG
1 TTTATTTTTTGACCTATAGTGTTATCTCGATCATATTTATTTTTCTGACCATTGGTGTTAACCCA
* *
22215159 GTCATATTTATTTTTCCAACCTATGGTGTTATCTCGATTATCTTTA-TTTTTTGACCTGTGGTGT
66 ATCATATTTATTTTT-CAACCTATGGTGTTATC-CGATCATCTTTATTTTTTTGACCTGTGGTGT
*
22215223 CATCC
129 TATCC
22215228 TGATCATTTA
Statistics
Matches: 280, Mismatches: 47, Indels: 37
0.77 0.13 0.10
Matches are distributed among these distances:
209 7 0.03
210 62 0.22
211 162 0.58
212 45 0.16
213 3 0.01
214 1 0.00
ACGTcount: A:0.20, C:0.17, G:0.14, T:0.50
Consensus pattern (209 bp):
TTTATTTTTTGACCTATAGTGTTATCTCGATCATATTTATTTTTCTGACCATTGGTGTTAACCCA
ATCATATTTATTTTTCAACCTATGGTGTTATCCGATCATCTTTATTTTTTTGACCTGTGGTGTTA
TCCGAGTCATCTTTATTTTTAAACTTAGGATGTTATTCCAATCATATTTTTTTTAAATTACAATG
TTGTCCTGATCATC
Found at i:22215294 original size:36 final size:35
Alignment explanation
Indices: 22215254--22215328 Score: 96
Period size: 36 Copynumber: 2.1 Consensus size: 35
22215244 CTACCATTGG
* *
22215254 TGTTATCCTAGTCATTTTTATTTTTTCAACCTACGA
1 TGTTATCCTAATCATCTTTATTTTTT-AACCTACGA
* * *
22215290 TGTTATCCTAATTATCTTTATTTTTTGACCTACGT
1 TGTTATCCTAATCATCTTTATTTTTTAACCTACGA
22215325 TGTT
1 TGTT
22215329 GTCCCGATCA
Statistics
Matches: 34, Mismatches: 5, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
35 11 0.32
36 23 0.68
ACGTcount: A:0.20, C:0.17, G:0.09, T:0.53
Consensus pattern (35 bp):
TGTTATCCTAATCATCTTTATTTTTTAACCTACGA
Found at i:22215321 original size:35 final size:36
Alignment explanation
Indices: 22215254--22215355 Score: 98
Period size: 35 Copynumber: 2.9 Consensus size: 36
22215244 CTACCATTGG
* *
22215254 TGTTATCCTAGTCATTTTTATTTTTTCAACCTACGA
1 TGTTATCCTAATCATCTTTATTTTTTCAACCTACGA
* * *
22215290 TGTTATCCTAATTATCTTTATTTTTT-GACCTACGT
1 TGTTATCCTAATCATCTTTATTTTTTCAACCTACGA
* ** * * *
22215325 TGTTGTCCCGATCATATTTGTTTTCTCAACC
1 TGTTATCCTAATCATCTTTATTTTTTCAACC
22215356 GTTGGTGTTG
Statistics
Matches: 52, Mismatches: 13, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
35 26 0.50
36 26 0.50
ACGTcount: A:0.20, C:0.21, G:0.10, T:0.50
Consensus pattern (36 bp):
TGTTATCCTAATCATCTTTATTTTTTCAACCTACGA
Found at i:22215338 original size:105 final size:105
Alignment explanation
Indices: 22215091--22215380 Score: 307
Period size: 105 Copynumber: 2.7 Consensus size: 105
22215081 TGTCCTGATC
* *
22215091 ATCTTTATTTTTTGACCTATAGTGTTATCTCGATCATATTTATTTT-TCTGACCATTGGTGTTAA
1 ATCTTTATTTTTTGACCTA-AGTGTTATCCCGATCA-ATTTATTTTCTCT-ACCATTGGTGTTAT
** * * *
22215155 CCCGGTCATATTTATTTTTCCAACCTATGGTGTTATCTCGATT
63 CCTAGTCATATTTATTTTTCCAACCTACGATGTTATCTCAATT
** * * *
22215198 ATCTTTATTTTTTGACCTGTGGTGTCATCCTGATC-ATTTATTTTCCCTACCATTGGTGTTATCC
1 ATCTTTATTTTTTGACCT-AAGTGTTATCCCGATCAATTTATTTTCTCTACCATTGGTGTTATCC
* *
22215262 TAGTCATTTTTATTTTTTCAACCTACGATGTTATC-CTAATT
65 TAGTCATATTTATTTTTCCAACCTACGATGTTATCTC-AATT
* * * * * * *
22215303 ATCTTTATTTTTTGACCTACGTTGTTGTCCCGATCATATTTGTTTTCTCAACCGTTGGTGTTGTT
1 ATCTTTATTTTTTGACCTAAG-TGTTATCCCGATCA-ATTTATTTTCTCTACCATTGGTGTTATC
22215368 CTAGTCATATTTA
64 CTAGTCATATTTA
22215381 CTTTCCTAAT
Statistics
Matches: 151, Mismatches: 26, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
104 2 0.01
105 84 0.56
106 2 0.01
107 63 0.42
ACGTcount: A:0.19, C:0.19, G:0.13, T:0.49
Consensus pattern (105 bp):
ATCTTTATTTTTTGACCTAAGTGTTATCCCGATCAATTTATTTTCTCTACCATTGGTGTTATCCT
AGTCATATTTATTTTTCCAACCTACGATGTTATCTCAATT
Found at i:22215506 original size:36 final size:35
Alignment explanation
Indices: 22215466--22215554 Score: 101
Period size: 35 Copynumber: 2.5 Consensus size: 35
22215456 TAACCTACAA
*
22215466 TGTTG-CCCTGATCATCTTTATCTTTTCAA-TCGTTGG
1 TGTTGTCCC-GATCATCTTTATC-TCTCAACT-GTTGG
*
22215502 TGTTGTCCCGGTCATCTTTATCTCTCAACTGTTGG
1 TGTTGTCCCGATCATCTTTATCTCTCAACTGTTGG
* *
22215537 TGTTGTCTCAATCATCTT
1 TGTTGTCCCGATCATCTT
22215555 ATTGTTTTTT
Statistics
Matches: 46, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
35 25 0.54
36 18 0.39
37 3 0.07
ACGTcount: A:0.13, C:0.24, G:0.17, T:0.46
Consensus pattern (35 bp):
TGTTGTCCCGATCATCTTTATCTCTCAACTGTTGG
Found at i:22215516 original size:141 final size:140
Alignment explanation
Indices: 22215303--22215562 Score: 314
Period size: 141 Copynumber: 1.9 Consensus size: 140
22215293 TATCCTAATT
* ** * *
22215303 ATCTTTATTTTTTGACCTACGTTGTTGTCCCGATCATATTTGTTTTCTCAACCGTTGGTGTTGTT
1 ATCTTTATTTTTTAACCTACAATGTTGTCCCGATCATATTTATTTTCTCAACCGTTGGTGTTGTC
* * * *
22215368 CTAGTCATATTTA-CTTTCCTAA-TGTTGGTGTTGTCTTAGTCATCTTTATT-TTTTGACCGTGG
66 CCAGTCATATTTATCTCT-C-AACTGTTGGTGTTGTCTCAATCATC-TTATTGTTTTGACCGTGG
22215430 TGTTGTCCCAGTC
128 TGTTGTCCCAGTC
* *
22215443 ATCTTTATTTTTCTAACCTACAATGTTG-CCCTGATCATCTTTATCTTT-TCAATCGTTGGTGTT
1 ATCTTTATTTTT-TAACCTACAATGTTGTCCC-GATCATATTTAT-TTTCTCAACCGTTGGTGTT
* *
22215506 GTCCCGGTCATCTTTATCTCTCAACTGTTGGTGTTGTCTCAATCATCTTATTGTTTT
63 GTCCCAGTCATATTTATCTCTCAACTGTTGGTGTTGTCTCAATCATCTTATTGTTTT
22215563 TTTACTTGCA
Statistics
Matches: 101, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
140 22 0.22
141 73 0.72
142 6 0.06
ACGTcount: A:0.15, C:0.20, G:0.16, T:0.49
Consensus pattern (140 bp):
ATCTTTATTTTTTAACCTACAATGTTGTCCCGATCATATTTATTTTCTCAACCGTTGGTGTTGTC
CCAGTCATATTTATCTCTCAACTGTTGGTGTTGTCTCAATCATCTTATTGTTTTGACCGTGGTGT
TGTCCCAGTC
Found at i:22215666 original size:21 final size:21
Alignment explanation
Indices: 22215642--22215681 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
22215632 TTTCAAAAAC
22215642 AAAAA-AAAAATAAACAAATAG
1 AAAAACAAAAATAAA-AAATAG
*
22215663 AAAAACAAAACTAAAAAAT
1 AAAAACAAAAATAAAAAAT
22215682 TCTAAAAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 9 0.53
22 8 0.47
ACGTcount: A:0.80, C:0.07, G:0.03, T:0.10
Consensus pattern (21 bp):
AAAAACAAAAATAAAAAATAG
Found at i:22216492 original size:143 final size:141
Alignment explanation
Indices: 22216214--22216511 Score: 368
Period size: 143 Copynumber: 2.1 Consensus size: 141
22216204 CATTTAAAGA
* * *
22216214 TATTTTCATAATTTGAATTTTCAAGCTTAAATTTTCATGAAATTATTCATATCTCAATTTCATAA
1 TATTTTCGTAATTTGAATTTTCAAGCTCAAATTTTCATAAAATTATTCATATCTCAATTTCATAA
* * * * *
22216279 TACTTCATGATTTTTGGTGCATTTTAAATTACAGAATACCCGAGAGGTATGTAATTATTGAAATA
66 TACTTCATGATTTTTGGTGCATTTGAAATCACAGAATACCAGAGAGGTATGAAATTAGTGAAATA
*
22216344 CCCCTTATGGGG
131 CCCCTTA-AGGG
* * * *
22216356 TATTTTGGTAATTTGATTTTTTCAAGCTCGAATTTTTATAAAACTT-TTCATATCTCAATTTCAT
1 TATTTTCGTAATTTGA-ATTTTCAAGCTCAAATTTTCATAAAA-TTATTCATATCTCAATTTCAT
* ** * *
22216420 AATATTTCATGATTTTTGGTGCATTTGAAATCATGGCAGTACCTAG-GAGGTGTGAAATTAGTGA
64 AATACTTCATGATTTTTGGTGCATTTGAAATCACAG-AATACC-AGAGAGGTATGAAATTAGTGA
22216484 AATA-CCCTTAAGGG
127 AATACCCCTTAAGGG
22216498 TATTTTCGTAATTT
1 TATTTTCGTAATTT
22216512 CACCTTCTTG
Statistics
Matches: 133, Mismatches: 19, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
142 30 0.23
143 76 0.57
144 26 0.20
145 1 0.01
ACGTcount: A:0.31, C:0.12, G:0.14, T:0.43
Consensus pattern (141 bp):
TATTTTCGTAATTTGAATTTTCAAGCTCAAATTTTCATAAAATTATTCATATCTCAATTTCATAA
TACTTCATGATTTTTGGTGCATTTGAAATCACAGAATACCAGAGAGGTATGAAATTAGTGAAATA
CCCCTTAAGGG
Found at i:22217004 original size:10 final size:10
Alignment explanation
Indices: 22216987--22217017 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
22216977 AATTCTTCTC
22216987 CCTTTTTTTT
1 CCTTTTTTTT
22216997 -CTTTTTTTT
1 CCTTTTTTTT
22217006 CCTTTTTTTT
1 CCTTTTTTTT
22217016 CC
1 CC
22217018 ATCCCGTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
9 9 0.45
10 11 0.55
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (10 bp):
CCTTTTTTTT
Found at i:22221093 original size:9 final size:9
Alignment explanation
Indices: 22221079--22221108 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
22221069 AAGGAAGAAG
22221079 TGGTGAATA
1 TGGTGAATA
22221088 TGGTGAATA
1 TGGTGAATA
22221097 TGGTGAATA
1 TGGTGAATA
22221106 TGG
1 TGG
22221109 AAAGTGAGGT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.30, C:0.00, G:0.37, T:0.33
Consensus pattern (9 bp):
TGGTGAATA
Found at i:22226037 original size:15 final size:16
Alignment explanation
Indices: 22226019--22226048 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
22226009 GTATTTAACC
22226019 TTAATT-TTTTTAATT
1 TTAATTCTTTTTAATT
22226034 TTAATTCTTTTTAAT
1 TTAATTCTTTTTAAT
22226049 AATAATAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (16 bp):
TTAATTCTTTTTAATT
Found at i:22233137 original size:44 final size:44
Alignment explanation
Indices: 22233063--22233408 Score: 379
Period size: 44 Copynumber: 7.9 Consensus size: 44
22233053 TCAAACTTCT
* * *
22233063 TAAAGCTCCTCTAAACAAAGGCTCAACAACTTTTGAAAGGTAAA
1 TAAAACTCCTCTAAACAGAGGCACAACAACTTTTGAAAGGTAAA
* * * *
22233107 TGAAACTCCTCTAAATAGAGGCACATCAACTTTTGAAAAGTAAA
1 TAAAACTCCTCTAAACAGAGGCACAACAACTTTTGAAAGGTAAA
* * * ** *
22233151 TAAAACTTCTCTAAATAAAGGCATGACAACTTTTGAAAAGTAAA
1 TAAAACTCCTCTAAACAGAGGCACAACAACTTTTGAAAGGTAAA
* * * *
22233195 TAAAAATCCTCTAAATAGAGGCACAATAACTTTTGAAA-ATGAAA
1 TAAAACTCCTCTAAACAGAGGCACAACAACTTTTGAAAGGT-AAA
* * * * * *
22233239 TAAAACTCTTTTAAATAGAGACACAACAACTTTTAAAAGATAAA
1 TAAAACTCCTCTAAACAGAGGCACAACAACTTTTGAAAGGTAAA
* * **
22233283 TAAAACTTCTTTAAACAGAGGCACAGTAACTTTTGAAAGGTAAA
1 TAAAACTCCTCTAAACAGAGGCACAACAACTTTTGAAAGGTAAA
* * * *
22233327 TAAAACTCCTTTAAACAGAGGCGCAACAACTTTTAAAAGATAAA
1 TAAAACTCCTCTAAACAGAGGCACAACAACTTTTGAAAGGTAAA
* *
22233371 TACAACTCCTCTAAACAGAGGCACAACAATTTTTGAAA
1 TAAAACTCCTCTAAACAGAGGCACAACAACTTTTGAAA
22233409 AATGTATGCA
Statistics
Matches: 255, Mismatches: 45, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
43 1 0.00
44 252 0.99
45 2 0.01
ACGTcount: A:0.46, C:0.17, G:0.12, T:0.25
Consensus pattern (44 bp):
TAAAACTCCTCTAAACAGAGGCACAACAACTTTTGAAAGGTAAA
Found at i:22233922 original size:22 final size:22
Alignment explanation
Indices: 22233880--22233930 Score: 68
Period size: 22 Copynumber: 2.4 Consensus size: 22
22233870 GTGCCCTAAA
*
22233880 GTCTT-AAAATTATGCCCAGAG
1 GTCTTAAAAATTATGCCAAGAG
* *
22233901 GTCTTAAAAATTGTGTCAAGAG
1 GTCTTAAAAATTATGCCAAGAG
22233923 GTCTTAAA
1 GTCTTAAA
22233931 TATTTCAAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
21 5 0.19
22 21 0.81
ACGTcount: A:0.35, C:0.14, G:0.20, T:0.31
Consensus pattern (22 bp):
GTCTTAAAAATTATGCCAAGAG
Found at i:22234026 original size:62 final size:61
Alignment explanation
Indices: 22233952--22234082 Score: 165
Period size: 62 Copynumber: 2.1 Consensus size: 61
22233942 ATTTTGAATC
* * * *
22233952 TTTAAAATCTTAAAAAGTTTTGCTTAG-TGGTCTTAAAGATTTTGCCTGGAGGTCTTAAAGA
1 TTTAAAAACTTAAAAAGTTTTGC-CAGAAGGTCTTAAAGATTGTGCCTGGAGGTCTTAAAGA
* * * *
22234013 TCTTAAAAACTTAAAAAGTTTTGCCCGAAGGTCTTAAAGATTGTGCCTTGAGGTTTTAAGGA
1 T-TTAAAAACTTAAAAAGTTTTGCCAGAAGGTCTTAAAGATTGTGCCTGGAGGTCTTAAAGA
22234075 TTTAAAAA
1 TTTAAAAA
22234083 ATCTTTGAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
61 9 0.15
62 51 0.85
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.37
Consensus pattern (61 bp):
TTTAAAAACTTAAAAAGTTTTGCCAGAAGGTCTTAAAGATTGTGCCTGGAGGTCTTAAAGA
Found at i:22234099 original size:80 final size:80
Alignment explanation
Indices: 22234015--22234385 Score: 474
Period size: 80 Copynumber: 4.6 Consensus size: 80
22234005 CTTAAAGATC
22234015 TTAAAAACTTAAAAAGTTTTGCCCGAAGGTCTTAAAGATTGTGCCTTGAGGTTTTAAGGATTTAA
1 TTAAAAACTTAAAAAGTTTTGCCCGAAGGTCTTAAAGATTGTGCCTTGAGGTTTTAAGGATTTAA
22234080 AAAATCTTTGAATCT
66 AAAATCTTTGAATCT
* * *
22234095 TTAAAAACTTAAAAAGTTTTGCTCGAAGGTCTTAAAGATTGTGCCTTGAGGTCTTAAGGATTTCA
1 TTAAAAACTTAAAAAGTTTTGCCCGAAGGTCTTAAAGATTGTGCCTTGAGGTTTTAAGGATTTAA
* *
22234160 AGAATCTTTTAATCT
66 AAAATCTTTGAATCT
* * * * * * *
22234175 TTAAAAACTTAAGAAGTTTTACTCGGAGGTCTTAAAGATTGTGCCCTAAGGTATTAAGGATTTAA
1 TTAAAAACTTAAAAAGTTTTGCCCGAAGGTCTTAAAGATTGTGCCTTGAGGTTTTAAGGATTTAA
*
22234240 AAAATCTTTGAATTTTTTTTT
66 AAAATCTTTGAA------TCT
* * * * *
22234261 TTTAAAACTTAAAAAGTTTTGCCCAAAGGTCTTAAAGATTGTGCCCTGAGATTTTAAGGATTT-C
1 TTAAAAACTTAAAAAGTTTTGCCCGAAGGTCTTAAAGATTGTGCCTTGAGGTTTTAAGGATTTAA
*
22234325 AAAATCTTTGAATTT
66 AAAATCTTTGAATCT
* * * *
22234340 TTACAAACTTAAAAAGTTTTTCCCAAAGGTTTTAAAGATTGTGCCT
1 TTAAAAACTTAAAAAGTTTTGCCCGAAGGTCTTAAAGATTGTGCCT
22234386 AGACGTCTTA
Statistics
Matches: 255, Mismatches: 30, Indels: 13
0.86 0.10 0.04
Matches are distributed among these distances:
79 44 0.17
80 143 0.56
85 12 0.05
86 56 0.22
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (80 bp):
TTAAAAACTTAAAAAGTTTTGCCCGAAGGTCTTAAAGATTGTGCCTTGAGGTTTTAAGGATTTAA
AAAATCTTTGAATCT
Found at i:22235093 original size:41 final size:42
Alignment explanation
Indices: 22235008--22235104 Score: 124
Period size: 41 Copynumber: 2.3 Consensus size: 42
22234998 AGTGCGAATA
* * *
22235008 CAAGTGATGCAAATACGAATGTCCTTTTTTGTGTTACAGATG
1 CAAGCGATGCAAATACGAATGTCCTTTCTTGTGATACAGATG
* *
22235050 CAAGCGATGCAAATATGAATGT-CTTTCTTGTGATGCAGATG
1 CAAGCGATGCAAATACGAATGTCCTTTCTTGTGATACAGATG
* *
22235091 CAAACTATGCAAAT
1 CAAGCGATGCAAAT
22235105 GCAAAGACTC
Statistics
Matches: 48, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
41 28 0.58
42 20 0.42
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (42 bp):
CAAGCGATGCAAATACGAATGTCCTTTCTTGTGATACAGATG
Found at i:22236444 original size:15 final size:15
Alignment explanation
Indices: 22236424--22236478 Score: 53
Period size: 15 Copynumber: 3.8 Consensus size: 15
22236414 ACCTATTCAT
22236424 TTCTTTTCTTTTTCC
1 TTCTTTTCTTTTTCC
* *
22236439 TTCTTTTATTCTTCC
1 TTCTTTTCTTTTTCC
*
22236454 TTCCTTTCATTTTT--
1 TTCTTTTC-TTTTTCC
22236468 TTCTTTT-TTTT
1 TTCTTTTCTTTT
22236479 CTCTTTTTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 5
0.75 0.14 0.11
Matches are distributed among these distances:
12 4 0.12
14 6 0.18
15 19 0.58
16 4 0.12
ACGTcount: A:0.04, C:0.22, G:0.00, T:0.75
Consensus pattern (15 bp):
TTCTTTTCTTTTTCC
Found at i:22243726 original size:45 final size:45
Alignment explanation
Indices: 22243660--22243747 Score: 158
Period size: 45 Copynumber: 2.0 Consensus size: 45
22243650 TAACAATCAA
* *
22243660 TGCAATATATGGTGGTTTGGTAAGGTGTGTTAAAAGAAGTGTTGC
1 TGCAATATATGGTGGTCTGGTAAGGTGTGTTAAAAGAACTGTTGC
22243705 TGCAATATATGGTGGTCTGGTAAGGTGTGTTAAAAGAACTGTT
1 TGCAATATATGGTGGTCTGGTAAGGTGTGTTAAAAGAACTGTT
22243748 ACTAAAGTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 41 1.00
ACGTcount: A:0.27, C:0.06, G:0.32, T:0.35
Consensus pattern (45 bp):
TGCAATATATGGTGGTCTGGTAAGGTGTGTTAAAAGAACTGTTGC
Found at i:22249479 original size:17 final size:16
Alignment explanation
Indices: 22249454--22249513 Score: 75
Period size: 17 Copynumber: 3.5 Consensus size: 16
22249444 AAGGAGACAA
22249454 AAAAAAAAACAATAAC
1 AAAAAAAAACAATAAC
22249470 AAACAAAAAAAACAATAAC
1 --A-AAAAAAAACAATAAC
*
22249489 AAAAAAATAATAATAAC
1 AAAAAAA-AACAATAAC
22249506 AAAAAAAA
1 AAAAAAAA
22249514 GAATAAAAAA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
16 7 0.18
17 16 0.41
18 1 0.03
19 15 0.38
ACGTcount: A:0.82, C:0.10, G:0.00, T:0.08
Consensus pattern (16 bp):
AAAAAAAAACAATAAC
Found at i:22249479 original size:19 final size:18
Alignment explanation
Indices: 22249450--22249513 Score: 94
Period size: 19 Copynumber: 3.6 Consensus size: 18
22249440 TGAGAAGGAG
22249450 ACAAAAAAAAAAACAATA
1 ACAAAAAAAAAAACAATA
22249468 ACAAACAAAAAAAACAATA
1 ACAAA-AAAAAAAACAATA
* *
22249487 AC-AAAAAAATAATAATA
1 ACAAAAAAAAAAACAATA
22249504 ACAAAAAAAA
1 ACAAAAAAAA
22249514 GAATAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
17 13 0.31
18 14 0.33
19 15 0.36
ACGTcount: A:0.81, C:0.11, G:0.00, T:0.08
Consensus pattern (18 bp):
ACAAAAAAAAAAACAATA
Found at i:22249493 original size:32 final size:31
Alignment explanation
Indices: 22249450--22249523 Score: 96
Period size: 32 Copynumber: 2.4 Consensus size: 31
22249440 TGAGAAGGAG
22249450 ACAA-AAAAAAAAACAATAACAAACAAAAAAA
1 ACAATAAAAAAAAACAATAA-AAACAAAAAAA
* *
22249481 ACAATAACAAAAAAATAATAATAACAAAAAAA
1 ACAATAA-AAAAAAACAATAAAAACAAAAAAA
*
22249513 AGAATAAAAAA
1 ACAATAAAAAA
22249524 TAAAAGAGGA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
31 8 0.21
32 18 0.47
33 12 0.32
ACGTcount: A:0.81, C:0.09, G:0.01, T:0.08
Consensus pattern (31 bp):
ACAATAAAAAAAAACAATAAAAACAAAAAAA
Found at i:22249528 original size:18 final size:18
Alignment explanation
Indices: 22249452--22249528 Score: 54
Period size: 17 Copynumber: 4.5 Consensus size: 18
22249442 AGAAGGAGAC
*
22249452 AAAAAAAAAAACAATAA-
1 AAAAAAAAAAAGAATAAT
* * *
22249469 CAAACAAAAAA-AACAAT
1 AAAAAAAAAAAGAATAAT
* *
22249486 -AACAAAAAAATAATAAT
1 AAAAAAAAAAAGAATAAT
*
22249503 AACAAAAAAAAGAATAA-
1 AAAAAAAAAAAGAATAAT
*
22249520 AAAATAAAA
1 AAAAAAAAA
22249529 GAGGACTCAT
Statistics
Matches: 46, Mismatches: 11, Indels: 6
0.73 0.17 0.10
Matches are distributed among these distances:
16 12 0.26
17 21 0.46
18 13 0.28
ACGTcount: A:0.82, C:0.08, G:0.01, T:0.09
Consensus pattern (18 bp):
AAAAAAAAAAAGAATAAT
Found at i:22249529 original size:15 final size:15
Alignment explanation
Indices: 22249471--22249530 Score: 68
Period size: 15 Copynumber: 3.9 Consensus size: 15
22249461 AACAATAACA
*
22249471 AACAAAAAAAACAAT
1 AACAAAAAAAAGAAT
*
22249486 AACAAAAAAATAATAAT
1 AAC-AAAAAA-AAGAAT
22249503 AACAAAAAAAAGAAT
1 AACAAAAAAAAGAAT
22249518 AA-AAAATAAAAGA
1 AACAAAA-AAAAGA
22249531 GGACTCATAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
14 4 0.10
15 16 0.40
16 12 0.30
17 8 0.20
ACGTcount: A:0.80, C:0.07, G:0.03, T:0.10
Consensus pattern (15 bp):
AACAAAAAAAAGAAT
Found at i:22250620 original size:37 final size:37
Alignment explanation
Indices: 22250577--22250652 Score: 98
Period size: 37 Copynumber: 2.1 Consensus size: 37
22250567 ATTTTTTTAT
** * * *
22250577 AAGTTTCAAAGCCTTTATTTAGGGGGAGCCATTTTCA
1 AAGTTTCAAAAACTCTATTTAAGGGGAGCAATTTTCA
*
22250614 AAGTTTCAAAAACTCTGTTTAAGGGGAGCAATTTTCA
1 AAGTTTCAAAAACTCTATTTAAGGGGAGCAATTTTCA
22250651 AA
1 AA
22250653 CAAGATTTTT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.33
Consensus pattern (37 bp):
AAGTTTCAAAAACTCTATTTAAGGGGAGCAATTTTCA
Found at i:22250643 original size:90 final size:92
Alignment explanation
Indices: 22250469--22250664 Score: 258
Period size: 90 Copynumber: 2.2 Consensus size: 92
22250459 AAGAGAAGAA
*
22250469 AAACAAGA--TTTTTAAAGTTTCAAAGCCTCTATTTAAAGGGAGCCATCCATTTTAAAAGTTTCA
1 AAACAAGATTTTTTTAAAGTTTCAAAGCCTCTATTT-AAGGGAGCCAGCCATTTTAAAAGTTTCA
*
22250532 AAACCTCTATTTAAACAGAGCAATTTTC
65 AAAACTCTATTTAAACAGAGCAATTTTC
* * *
22250560 AAACAAGATTTTTTTATAAGTTTCAAAGCCTTTATTT-AGGG-G-GAGCCATTTTCAAAGTTTCA
1 AAACAAGATTTTTTTA-AAGTTTCAAAGCCTCTATTTAAGGGAGCCAGCCATTTTAAAAGTTTCA
* ***
22250622 AAAACTCTGTTTAAGGGGAGCAATTTTC
65 AAAACTCTATTTAAACAGAGCAATTTTC
22250650 AAACAAGATTTTTTT
1 AAACAAGATTTTTTT
22250665 TTTTTTTTTA
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
90 55 0.59
91 9 0.10
92 4 0.04
93 6 0.06
94 19 0.20
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.36
Consensus pattern (92 bp):
AAACAAGATTTTTTTAAAGTTTCAAAGCCTCTATTTAAGGGAGCCAGCCATTTTAAAAGTTTCAA
AAACTCTATTTAAACAGAGCAATTTTC
Found at i:22250800 original size:25 final size:24
Alignment explanation
Indices: 22250772--22250833 Score: 79
Period size: 25 Copynumber: 2.5 Consensus size: 24
22250762 AAAACAAAAA
* *
22250772 CAAAAAATAAAAATAAAAGAGATAG
1 CAAAAAA-AAAAAAAAAAGAGAGAG
22250797 CAAAAACAAAAAAAAAAAGAGAGAG
1 CAAAAA-AAAAAAAAAAAGAGAGAG
*
22250822 TAAAAAAAAAAA
1 CAAAAAAAAAAA
22250834 CAACAAAAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 6 0.18
25 26 0.79
26 1 0.03
ACGTcount: A:0.77, C:0.05, G:0.11, T:0.06
Consensus pattern (24 bp):
CAAAAAAAAAAAAAAAAGAGAGAG
Found at i:22250861 original size:34 final size:31
Alignment explanation
Indices: 22250798--22250861 Score: 74
Period size: 34 Copynumber: 2.0 Consensus size: 31
22250788 AAGAGATAGC
22250798 AAAAACAAAAAAAAAAAGAGAGAGTAAAAAAAAA
1 AAAAACAAAAAAAAAAAGAGA-A--AAAAAAAAA
* **
22250832 AACAACAAAAACCAAAAGAGAAAAAAAAAA
1 AAAAACAAAAAAAAAAAGAGAAAAAAAAAA
22250862 CTCTCAAAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
31 8 0.30
33 1 0.04
34 18 0.67
ACGTcount: A:0.81, C:0.08, G:0.09, T:0.02
Consensus pattern (31 bp):
AAAAACAAAAAAAAAAAGAGAAAAAAAAAAA
Found at i:22260170 original size:18 final size:18
Alignment explanation
Indices: 22260147--22260184 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
22260137 CACACATTGA
22260147 ATACATAAAATTAAGAAT
1 ATACATAAAATTAAGAAT
22260165 ATACATAAAATTAAGAAT
1 ATACATAAAATTAAGAAT
22260183 AT
1 AT
22260185 GGACAAAAGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.61, C:0.05, G:0.05, T:0.29
Consensus pattern (18 bp):
ATACATAAAATTAAGAAT
Found at i:22262850 original size:20 final size:19
Alignment explanation
Indices: 22262827--22262883 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 19
22262817 TTTTTATCTT
22262827 GAAATAAAAATAAAACAAAA
1 GAAATAAAAATAAAA-AAAA
22262847 GAAATTAAAAA-AATAAAAAA
1 GAAA-TAAAAATAA-AAAAAA
* *
22262867 GACATCAAAATAAAAAA
1 GAAATAAAAATAAAAAA
22262884 GGATCATGCT
Statistics
Matches: 32, Mismatches: 2, Indels: 7
0.78 0.05 0.17
Matches are distributed among these distances:
19 9 0.28
20 15 0.47
21 8 0.25
ACGTcount: A:0.77, C:0.05, G:0.05, T:0.12
Consensus pattern (19 bp):
GAAATAAAAATAAAAAAAA
Found at i:22265698 original size:12 final size:11
Alignment explanation
Indices: 22265673--22265697 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
22265663 TTTTCTTTAG
22265673 TTTCTTAGTTT
1 TTTCTTAGTTT
22265684 TTTCTTAGTTT
1 TTTCTTAGTTT
22265695 TTT
1 TTT
22265698 TATATTAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.08, G:0.08, T:0.76
Consensus pattern (11 bp):
TTTCTTAGTTT
Found at i:22267242 original size:216 final size:216
Alignment explanation
Indices: 22266820--22267256 Score: 615
Period size: 216 Copynumber: 2.0 Consensus size: 216
22266810 GAAATTATTT
* * * * *
22266820 TGAATTAATAACTTTTGGTTGAAACTATCATGCTAGAGGATAAATGAGACACAAACGCTAGATGT
1 TGAAATAATAACTTTTAGTTGAAACTATCATGCTAAAGGATAAAGGAGACACAAACACTAGATGT
* * *
22266885 AACATAGTTAGCTTAACATAAAATATCTTTTAAGATGATTACATGATGGCTACCCTTATTCAAGC
66 AACATAGTTAGCCTAACATAAAATATCTTTGAAGATGATTACATAATGGCTACCCTTATTCAAGC
* * *
22266950 CTCTAGGTTGTCAATGCAAAATAATTTGTTACATCTTATTATTACCTATATGTTAGCACCATTTG
131 CTCTAGGTTGTCAATGCAAAATAAGTTGTTACACCTTATTATTACCTATATGTTAGCACCATTTA
*
22267015 GAACTCAATACTCCACCATTA
196 GAACCCAATACTCCACCATTA
** * *
22267036 TGAAATAATAACTTTTAGTTGAAGTTTTCATGCTAAATGAT-AAGGAAGACACAAACACTAGATG
1 TGAAATAATAACTTTTAGTTGAAACTATCATGCTAAAGGATAAAGG-AGACACAAACACTAGATG
* * * *
22267100 TAATATAGTTGGCCTAACATAAAATATCTTTGAAGATGATTACATAATGGTTGCCCTTATTCAAG
65 TAACATAGTTAGCCTAACATAAAATATCTTTGAAGATGATTACATAATGGCTACCCTTATTCAAG
* * * * *
22267165 CCTCTAGGTTGTCAATGCAAAATAAGTTGTTACACCTTATTGTTAGCTATGTGTTGGCACCCTTT
130 CCTCTAGGTTGTCAATGCAAAATAAGTTGTTACACCTTATTATTACCTATATGTTAGCACCATTT
*
22267230 AGAACCCAATACTTCACCATTA
195 AGAACCCAATACTCCACCATTA
*
22267252 GGAAA
1 TGAAA
22267257 CAAGATTATT
Statistics
Matches: 193, Mismatches: 27, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
215 3 0.02
216 190 0.98
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (216 bp):
TGAAATAATAACTTTTAGTTGAAACTATCATGCTAAAGGATAAAGGAGACACAAACACTAGATGT
AACATAGTTAGCCTAACATAAAATATCTTTGAAGATGATTACATAATGGCTACCCTTATTCAAGC
CTCTAGGTTGTCAATGCAAAATAAGTTGTTACACCTTATTATTACCTATATGTTAGCACCATTTA
GAACCCAATACTCCACCATTA
Found at i:22270485 original size:20 final size:18
Alignment explanation
Indices: 22270455--22270509 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 18
22270445 AAATATTAAA
22270455 TTTAA-TTTTTAAAAATAT
1 TTTAATTTTTTAAAAAT-T
22270473 TTTAATTTTTTTAATATAATT
1 TTTAA-TTTTTTAA-A-AATT
*
22270494 TTTTATTTTTTAAAAA
1 TTTAATTTTTTAAAAA
22270510 AATTATATTT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
18 7 0.22
19 1 0.03
20 15 0.47
21 6 0.19
22 3 0.09
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (18 bp):
TTTAATTTTTTAAAAATT
Found at i:22270873 original size:23 final size:23
Alignment explanation
Indices: 22270820--22270873 Score: 58
Period size: 23 Copynumber: 2.3 Consensus size: 23
22270810 ATATTAATTT
22270820 TTAAAAAATTAAATTATTGAGAA
1 TTAAAAAATTAAATTATTGAGAA
* *
22270843 -AAATAAAATTAATATTTTTGA-AA
1 TTAA-AAAATTAA-ATTATTGAGAA
22270866 TTAAAAAA
1 TTAAAAAA
22270874 ATTCTAAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 6
0.74 0.09 0.18
Matches are distributed among these distances:
22 2 0.08
23 14 0.56
24 9 0.36
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (23 bp):
TTAAAAAATTAAATTATTGAGAA
Found at i:22270874 original size:24 final size:22
Alignment explanation
Indices: 22270822--22270876 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 22
22270812 ATTAATTTTT
22270822 AAAAAATTAAATTATTGAGAAA
1 AAAAAATTAAATTATTGAGAAA
*
22270844 AATAAAATTAATATTTTTGA-AATTA
1 AA-AAAATTAA-ATTATTGAGAA--A
22270869 AAAAAATT
1 AAAAAATT
22270877 CTAAATAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
22 2 0.07
23 10 0.36
24 13 0.46
25 3 0.11
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (22 bp):
AAAAAATTAAATTATTGAGAAA
Found at i:22270941 original size:24 final size:25
Alignment explanation
Indices: 22270914--22270964 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
22270904 ATAAAAATTG
22270914 AAATAT-AATTGTTAAAAAAATCAA
1 AAATATGAATTGTTAAAAAAATCAA
* * *
22270938 AAATATGATTTTTTAAAAAAATTAA
1 AAATATGAATTGTTAAAAAAATCAA
22270963 AA
1 AA
22270965 TATTTTTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 6 0.26
25 17 0.74
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (25 bp):
AAATATGAATTGTTAAAAAAATCAA
Found at i:22270965 original size:24 final size:24
Alignment explanation
Indices: 22270895--22270967 Score: 76
Period size: 24 Copynumber: 3.0 Consensus size: 24
22270885 TTCAAATTAT
* * *
22270895 TGATATTTTATAAAAATTGAAATA
1 TGATTTTTTAAAAAAATTAAAATA
* * *
22270919 T-AATTGTTAAAAAAATCAAAAATA
1 TGATTTTTTAAAAAAAT-TAAAATA
22270943 TGATTTTTTAAAAAAATTAAAATA
1 TGATTTTTTAAAAAAATTAAAATA
22270967 T
1 T
22270968 TTTTAAAAAT
Statistics
Matches: 38, Mismatches: 9, Indels: 4
0.75 0.18 0.08
Matches are distributed among these distances:
23 11 0.29
24 14 0.37
25 13 0.34
ACGTcount: A:0.55, C:0.01, G:0.05, T:0.38
Consensus pattern (24 bp):
TGATTTTTTAAAAAAATTAAAATA
Found at i:22271059 original size:19 final size:19
Alignment explanation
Indices: 22271018--22271061 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
22271008 GCCTAATCAT
* *
22271018 ATTTTTTTAATTTTATGTG
1 ATTTTTTTAATTTTATATA
*
22271037 ATTTTTTTAATTTTTTATA
1 ATTTTTTTAATTTTATATA
22271056 ATTTTT
1 ATTTTT
22271062 AAAAAAGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.05, T:0.73
Consensus pattern (19 bp):
ATTTTTTTAATTTTATATA
Found at i:22271769 original size:31 final size:31
Alignment explanation
Indices: 22271734--22271792 Score: 75
Period size: 31 Copynumber: 1.9 Consensus size: 31
22271724 GATCTGAAAA
22271734 TTTTTATATAATATCTTAACA-TGATATAGGG
1 TTTTTATATAATATCTTAA-ATTGATATAGGG
* * *
22271765 TTTTTCTTTAATTTCTTAAATTGATATA
1 TTTTTATATAATATCTTAAATTGATATA
22271793 AAAATTTTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 1 0.04
31 23 0.96
ACGTcount: A:0.32, C:0.07, G:0.08, T:0.53
Consensus pattern (31 bp):
TTTTTATATAATATCTTAAATTGATATAGGG
Found at i:22279750 original size:21 final size:21
Alignment explanation
Indices: 22279680--22279763 Score: 71
Period size: 21 Copynumber: 4.0 Consensus size: 21
22279670 TAGTGCTTAA
* *
22279680 TCATTGTACCTTAAGTGATGAG
1 TCATTGTACCAT-AGTTATGAG
* * * *
22279702 TCACTATACCATAATAATG-G
1 TCATTGTACCATAGTTATGAG
*
22279722 ATCTTTGTACCATAGTTATGAG
1 -TCATTGTACCATAGTTATGAG
*
22279744 TCATTGTACCTTAGTTATGA
1 TCATTGTACCATAGTTATGA
22279764 CTCACCTTCC
Statistics
Matches: 48, Mismatches: 12, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
20 1 0.02
21 37 0.77
22 10 0.21
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.38
Consensus pattern (21 bp):
TCATTGTACCATAGTTATGAG
Found at i:22284907 original size:18 final size:17
Alignment explanation
Indices: 22284884--22285093 Score: 92
Period size: 18 Copynumber: 12.5 Consensus size: 17
22284874 AATTTTACTT
22284884 ATAAATAACATTATATTA
1 ATAAATAA-ATTATATTA
*
22284902 ATAAATAAATAATATT-
1 ATAAATAAATTATATTA
*
22284918 AT-ATTATAA-TATATTA
1 ATAAATA-AATTATATTA
*
22284934 ATAAATAATATTATATGA
1 ATAAATAA-ATTATATTA
22284952 ATAAAT-AATATACTATTA
1 ATAAATAAAT-TA-TATTA
* *
22284970 ATATAATATATTAGTAAATA
1 ATA-AATAAATTA-T-ATTA
**
22284990 ATATTTTTATAA-TATATTA
1 ATA--AATA-AATTATATTA
22285009 ATAAAT-AATT-TATTA
1 ATAAATAAATTATATTA
22285024 ATAAAT-AATATATTATTA
1 ATAAATAAAT-TA-TATTA
*
22285042 AT-AAT-AA-TATACT-
1 ATAAATAAATTATATTA
*
22285055 ATATAT-AA-TATATTA
1 ATAAATAAATTATATTA
*
22285070 ATAAA-ATAA-TATTTTA
1 ATAAATA-AATTATATTA
22285086 ATAAATAA
1 ATAAATAA
22285094 TATAAAGAAT
Statistics
Matches: 151, Mismatches: 20, Indels: 44
0.70 0.09 0.20
Matches are distributed among these distances:
13 2 0.01
14 12 0.08
15 30 0.20
16 25 0.17
17 21 0.14
18 34 0.23
19 12 0.08
20 9 0.06
21 5 0.03
22 1 0.01
ACGTcount: A:0.55, C:0.01, G:0.01, T:0.43
Consensus pattern (17 bp):
ATAAATAAATTATATTA
Found at i:22284929 original size:8 final size:7
Alignment explanation
Indices: 22284905--22285097 Score: 70
Period size: 7 Copynumber: 27.9 Consensus size: 7
22284895 TATATTAATA
*
22284905 AATAAAT
1 AATATAT
22284912 AATAT-T
1 AATATAT
22284918 -ATATTAT
1 AATA-TAT
22284925 AATATATT
1 AATATA-T
*
22284933 AATAAAT
1 AATATAT
22284940 AATAT-T
1 AATATAT
*
22284946 -ATAT-G
1 AATATAT
*
22284951 AATAAAT
1 AATATAT
22284958 AATATACT
1 AATATA-T
*
22284966 ATTAATAT
1 AAT-ATAT
22284974 AATATATT
1 AATATA-T
* *
22284982 AGTAAAT
1 AATATAT
22284989 AATAT-T
1 AATATAT
*
22284995 --TTTAT
1 AATATAT
22285000 AATATATT
1 AATATA-T
*
22285008 AATAAAT
1 AATATAT
*
22285015 AATTTATT
1 AATATA-T
*
22285023 AATAAAT
1 AATATAT
22285030 AATATAT
1 AATATAT
22285037 --TAT-T
1 AATATAT
22285041 AATA-AT
1 AATATAT
22285047 AATATACT
1 AATATA-T
22285055 -ATATAT
1 AATATAT
22285061 AATATATT
1 AATATA-T
*
22285069 AATAAAAT
1 AAT-ATAT
*
22285077 AATATTTT
1 AATA-TAT
*
22285085 AATAAAT
1 AATATAT
22285092 AATATA
1 AATATA
22285098 AAGAATAATA
Statistics
Matches: 136, Mismatches: 27, Indels: 46
0.65 0.13 0.22
Matches are distributed among these distances:
4 3 0.02
5 11 0.08
6 15 0.11
7 57 0.42
8 45 0.33
9 5 0.04
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (7 bp):
AATATAT
Found at i:22284958 original size:46 final size:47
Alignment explanation
Indices: 22284884--22285096 Score: 198
Period size: 49 Copynumber: 4.6 Consensus size: 47
22284874 AATTTTACTT
* * *
22284884 ATAAATAACATTATATTAATAAATAAATAATATTATATTATAATATATTA
1 ATAAATAATATTATA-TAATAAAT-AATATTACTATA-TATAATATATTA
22284934 ATAAATAATATTATATGAATAAATAATA-TACTATTAATATAATATATTA
1 ATAAATAATATTATAT-AATAAATAATATTACTA-T-ATATAATATATTA
* * * *
22284983 GTAAATAATATT-T-TTAT-AAT-ATATTA--ATAAATAATTTATTA
1 ATAAATAATATTATATAATAAATAATATTACTATATATAATATATTA
22285024 ATAAATAATA-TATTATTAAT-AATAATA-TACTATATATAATATATTA
1 ATAAATAATATTA-TA-TAATAAATAATATTACTATATATAATATATTA
22285070 ATAAAATAATATT-T-TAATAAATAATAT
1 AT-AAATAATATTATATAATAAATAATAT
22285097 AAAGAATAAT
Statistics
Matches: 138, Mismatches: 10, Indels: 34
0.76 0.05 0.19
Matches are distributed among these distances:
40 1 0.01
41 20 0.14
42 2 0.01
43 1 0.01
44 15 0.11
45 15 0.11
46 18 0.13
47 9 0.07
48 6 0.04
49 29 0.21
50 22 0.16
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.43
Consensus pattern (47 bp):
ATAAATAATATTATATAATAAATAATATTACTATATATAATATATTA
Found at i:22285041 original size:72 final size:77
Alignment explanation
Indices: 22284906--22285096 Score: 250
Period size: 77 Copynumber: 2.5 Consensus size: 77
22284896 ATATTAATAA
22284906 ATAAATAATATTATATTATAATATATTAATAAATAATATTATATGAATAAATAATATACTATTAA
1 ATAAATAATATTATATTATAATATATTAATAAATAATATTATATGAATAAATAATATACTATTAA
*
22284971 T-ATAATATATT
66 TAATAATATACT
*
22284982 AGTAAATAATATT-T-TTATAATATATTAATAAATAAT-TTAT-T-AATAAATAATATATTATTA
1 A-TAAATAATATTATATTATAATATATTAATAAATAATATTATATGAATAAATAATATACTATTA
22285042 ATAATAATATACT
65 ATAATAATATACT
* ** *
22285055 ATATATAATATATTAATAAAATAATATTTTAATAAATAATAT
1 ATAAAT-A-ATATT-ATATTATAATATATTAATAAATAATAT
22285097 AAAGAATAAT
Statistics
Matches: 101, Mismatches: 6, Indels: 14
0.83 0.05 0.12
Matches are distributed among these distances:
72 24 0.24
73 12 0.12
74 9 0.09
75 22 0.22
76 3 0.03
77 30 0.30
78 1 0.01
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (77 bp):
ATAAATAATATTATATTATAATATATTAATAAATAATATTATATGAATAAATAATATACTATTAA
TAATAATATACT
Found at i:22285093 original size:15 final size:15
Alignment explanation
Indices: 22284895--22285097 Score: 184
Period size: 15 Copynumber: 13.3 Consensus size: 15
22284885 TAAATAACAT
22284895 TATATTAATAAATAAA
1 TATATTAATAAAT-AA
*
22284911 TAATATT-ATATTATAA
1 T-ATATTAATA-AATAA
22284927 TATATTAATAAATAA
1 TATATTAATAAATAA
22284942 TATTATATGAATAAATAA
1 TA-TAT-T-AATAAATAA
* *
22284960 TATACTATTAATATAA
1 TATATTAATAA-ATAA
*
22284976 TATATTAGTAAATAA
1 TATATTAATAAATAA
*
22284991 TAT-TT--T-TATAA
1 TATATTAATAAATAA
22285002 TATATTAATAAATAA
1 TATATTAATAAATAA
*
22285017 TTTATTAATAAATAA
1 TATATTAATAAATAA
*
22285032 TATATTATTAATAATAA
1 TATATTAAT-A-AATAA
* *
22285049 TATACT-ATATATAA
1 TATATTAATAAATAA
22285063 TATATTAATAAAATAA
1 TATATTAAT-AAATAA
*
22285079 TATTTTAATAAATAA
1 TATATTAATAAATAA
22285094 TATA
1 TATA
22285098 AAGAATAATA
Statistics
Matches: 154, Mismatches: 18, Indels: 31
0.76 0.09 0.15
Matches are distributed among these distances:
11 7 0.05
12 3 0.02
14 12 0.08
15 59 0.38
16 42 0.27
17 20 0.13
18 11 0.07
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (15 bp):
TATATTAATAAATAA
Found at i:22285108 original size:118 final size:121
Alignment explanation
Indices: 22284897--22285116 Score: 274
Period size: 122 Copynumber: 1.8 Consensus size: 121
22284887 AATAACATTA
* *
22284897 TATTAATAAATAAATAATATTATATTATAATATATTAATAAATAATATTATATGAATAAATAATA
1 TATTAATAAATAAATAATATTATATAATAATATACTAATAAATAATATTATATGAATAAATAATA
* * *
22284962 TACTATTAATATAATATATTAGTAAATAATATTTTTATAATATATTAATAAATAATT
66 TACTAATAATATAATATATAAGAAAATAA-ATTTTTATAATATATTAATAAATAATT
* *
22285019 TATTAATAAATAATATATTATTA-ATAATAATATACT-ATATATAATA-TAT-T-AATAAAATAA
1 TATTAATAAATAA-ATAATATTATATAATAATATACTAATAAATAATATTATATGAAT-AAATAA
**
22285079 TATTTTAATAA-ATAATATA-AAGAATAATAAATTTTTAT
64 TATACTAATAATATAATATATAAGAA-AATAAATTTTTAT
22285117 TTTAAGTATT
Statistics
Matches: 86, Mismatches: 9, Indels: 11
0.81 0.08 0.10
Matches are distributed among these distances:
117 11 0.13
118 16 0.19
119 15 0.17
120 3 0.03
121 9 0.10
122 24 0.28
123 8 0.09
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (121 bp):
TATTAATAAATAAATAATATTATATAATAATATACTAATAAATAATATTATATGAATAAATAATA
TACTAATAATATAATATATAAGAAAATAAATTTTTATAATATATTAATAAATAATT
Found at i:22285190 original size:16 final size:17
Alignment explanation
Indices: 22285159--22285207 Score: 55
Period size: 17 Copynumber: 2.8 Consensus size: 17
22285149 AATGTTAAAT
22285159 ATTATTATTAAAATAT-A
1 ATTATT-TTAAAATATCA
*
22285176 ATTATTTTTAAATATCA
1 ATTATTTTAAAATATCA
*
22285193 ATAATTTTAATAATA
1 ATTATTTTAA-AATA
22285208 AATAATTCAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
16 8 0.30
17 15 0.56
18 4 0.15
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (17 bp):
ATTATTTTAAAATATCA
Found at i:22285219 original size:24 final size:25
Alignment explanation
Indices: 22285184--22285253 Score: 99
Period size: 25 Copynumber: 2.8 Consensus size: 25
22285174 TAATTATTTT
22285184 TAAATATCAATAATTTTAATAATAAA
1 TAAAT-TCAATAATTTTAATAATAAA
22285210 T-AATTCAATATATTTTAATAATAAA
1 TAAATTCAATA-ATTTTAATAATAAA
*
22285235 TAAATTTAAT-ATTTTAATA
1 TAAATTCAATAATTTTAATA
22285254 GTTATATTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 6
0.85 0.02 0.12
Matches are distributed among these distances:
24 15 0.37
25 18 0.44
26 8 0.20
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.44
Consensus pattern (25 bp):
TAAATTCAATAATTTTAATAATAAA
Found at i:22291199 original size:222 final size:222
Alignment explanation
Indices: 22290813--22291260 Score: 878
Period size: 222 Copynumber: 2.0 Consensus size: 222
22290803 TTTGAAAGGG
*
22290813 GAAACAATGACAGAATGGTATGCAAACTAAATAAGTCTTTCTATGGTTTAAAACAGTCACCAAGG
1 GAAACAATGACAGAATGGTATGCAAACTAAAGAAGTCTTTCTATGGTTTAAAACAGTCACCAAGG
22290878 CTTGGTTTGATTGCTTTGTAAAATTAGTAAAGAGACATGGATTTAACCAAGGACAAATTGATCAT
66 CTTGGTTTGATTGCTTTGTAAAATTAGTAAAGAGACATGGATTTAACCAAGGACAAATTGATCAT
22290943 ACTTTTTGTTTTTAAACACTCACAACATGGAAAAAAAGACTATATTGATCATTAATGTTGATGAT
131 ACTTTTTGTTTTTAAACACTCACAACATGGAAAAAAAGACTATATTGATCATTAATGTTGATGAT
22291008 ATTATATTGACAAGTGATGACACTGAA
196 ATTATATTGACAAGTGATGACACTGAA
*
22291035 GAAACAATGACAGAATGGTATGCAAACTGAAGAAGTCTTTCTATGGTTTAAAACAGTCACCAAGG
1 GAAACAATGACAGAATGGTATGCAAACTAAAGAAGTCTTTCTATGGTTTAAAACAGTCACCAAGG
22291100 CTTGGTTTGATTGCTTTGTAAAATTAGTAAAGAGACATGGATTTAACCAAGGACAAATTGATCAT
66 CTTGGTTTGATTGCTTTGTAAAATTAGTAAAGAGACATGGATTTAACCAAGGACAAATTGATCAT
22291165 ACTTTTTGTTTTTAAACACTCACAACATGGAAAAAAAGACTATATTGATCATTAATGTTGATGAT
131 ACTTTTTGTTTTTAAACACTCACAACATGGAAAAAAAGACTATATTGATCATTAATGTTGATGAT
22291230 ATTATATTGACAAGTGATGACACTGAA
196 ATTATATTGACAAGTGATGACACTGAA
22291257 GAAA
1 GAAA
22291261 TAGAAAGGCT
Statistics
Matches: 224, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
222 224 1.00
ACGTcount: A:0.39, C:0.12, G:0.18, T:0.31
Consensus pattern (222 bp):
GAAACAATGACAGAATGGTATGCAAACTAAAGAAGTCTTTCTATGGTTTAAAACAGTCACCAAGG
CTTGGTTTGATTGCTTTGTAAAATTAGTAAAGAGACATGGATTTAACCAAGGACAAATTGATCAT
ACTTTTTGTTTTTAAACACTCACAACATGGAAAAAAAGACTATATTGATCATTAATGTTGATGAT
ATTATATTGACAAGTGATGACACTGAA
Found at i:22293033 original size:26 final size:26
Alignment explanation
Indices: 22292994--22293043 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
22292984 CCGGTCCAAT
* *
22292994 CTTAGACTGGGAATGAACTCTGTACG
1 CTTAGACTGAGAATCAACTCTGTACG
22293020 CTTAGACTGAGAATCAACTCTGTA
1 CTTAGACTGAGAATCAACTCTGTA
22293044 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATCAACTCTGTACG
Found at i:22293485 original size:884 final size:886
Alignment explanation
Indices: 22291274--22301742 Score: 11971
Period size: 900 Copynumber: 11.8 Consensus size: 886
22291264 AAAGGCTAAA
* ** * * *
22291274 GAAACGAGCGTGCGGGCTCTCAGCTAGCCAGAGGGGTGGGATGCGTAAGCCGGGGATC-GATCGG
1 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
* * * * *
22291338 GTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCATCCCTCGGTCCGGTCCAATCTTAGACTAGG
66 GTCCCCCTC----TG-T----ATCGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
* *
22291403 AATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAAAGGGTGGGCGGGCGGGCGGGCACTACA
122 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACG--A------GCGGGCGGGCGGGCACTACG
* * * * * *
22291468 TCGACCAGAGAGACAGGATGCGCAAGCTGTGGATTGATAGAGTGGTAGGTGGGTTTAGGCACATC
179 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* *
22291533 TTCATATTTCTGCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACAATGGTCTCTTAAGCC
244 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * * *
22291598 TTCATGTGAAGTTTCATGGCAAGACGACTTGTTTTCTCTTTTCCATGATTTTTGAAACTTTTTGC
309 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
*
22291663 GGTTCAGG-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
374 -GTT-TGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* **
22291727 TTGTATTTTTGTTGGCATGCACAAAAAAATTAAGCTAGGAACTCGAAGTGTACAAGATTTTGTGA
437 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
22291792 CCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTATAAAATC
502 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
22291857 TCAAATGGTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGG
567 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * ***
22291922 GCCGAGTACCAGCACCCATCGCACATCATGTGCGCACGCCCCCCCCGGCACCCCCGATTGTCGGA
632 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCGGC-CCCCCGATCACCGGA
** ** * ** * * *
22291987 ACCCCAATATCACCGATCAGGTTCTCCAACGATGCTCCGATGATGGTGCCTCGACGAAGACAAAT
695 ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * *
22292052 ACAGCACCAGCACATGCCCGAGCCCAGGATGTGCTATCGCAACCCTCGGTCTGGTCC-A----A-
760 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAG
* * *
22292111 TCT-----T--A----G-A--C-T--A--G-GAATGAACTCCGTATGCCTAAGTGAACCCAT
825 ACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
22292153 GAAACGAGCGTGCGGGCTCTCAACCGGCCAGAAGGGTGGGATGCGCAAGCCGGGGATCGGC-CGG
1 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
* * * * * *
22292217 GTCCCCCTCTGCGTGCTGCCGATCCTATTGCTGCAACCCTC-AGTCTGATCCGTTCTTAGACTGG
66 GTCCCCCTCT--GT-AT--CG-TGC---TGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGG
*
22292281 GAATGGACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGACGGTTGGGCGGGCA
121 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC--G-GG-C----GGGCGGGCA
* * *
22292346 CTACGTCAGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
174 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
22292411 ACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
239 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * * *
22292476 AAACCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTCTCTATTTTCCACGATTTTTGAAACTT
304 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
* * * *
22292541 TTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTTGCCCCAAACTTGGTAGACGTG
369 TTTACGTTTGGA-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * * *
22292606 ATCCTTCTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGCACAAGATTTT
433 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* *
22292671 GTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCAGCAAACCTGTAA
498 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
22292736 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
563 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
22292801 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGGCCCCCTCGATCACC
628 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCACC
* * **
22292866 GGAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGGCCCGGTGAAGAAA
692 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * *
22292931 AATGCGGCACCAGCACATGCCCGAGCCCAGCCTGTGCTGTCGTATCCCTCGGTCCGGTCCAATCT
757 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCT
* * * *
22292996 TAGACTGGGAATGAACTCTGTACGCTTAGACTGAGAATCAACTCTGTATGCCTAAGTCAACCCAC
822 TAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
22293061 GAAACGAGCGTGGGGGTGCTCAGCCGACCAGAGGGGAGGGATGCGCAAGCCGGGGATCGGCT-GG
1 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
* * *
22293125 GTCCCCCT-T-TAT-GTGCTGCCGCAACCTTCGATCCGGTCTGATCTTAGGCTGGGAATGAACTC
66 GTCCCCCTCTGTATCGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * * * *
22293187 TGTATGCCTATGTCAACCGACGAAATGAGCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACAGG
131 CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
* * *
22293252 ATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTTTGCATGC
196 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
*
22293317 CAATGTCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
261 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* **
22293382 GGCAAGATGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGATTTGGAATTTTTTAA
326 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACG-TTTGGAATTTTTTAA
* * * *
22293447 AATTTTTTTGGAAGGATTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTATTGGCAT
390 AATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
* * * *
22293512 GCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAACTATC
455 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
** * *
22293577 CCCATTAGAAACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
520 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* *
22293642 GGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTACA-TACCAGCACCC
585 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCACCC
* **
22293706 ATCACACATCATGTGCGCACACCCTCCCCGGCCCCCTCGATCGGCGGAACCCCAATGCCGTCGGT
649 ATCGCACATCATGTGCGCACACCC-CCCCGGCCCCC-CGATCACCGGAACCCCAATGCCGTCGGT
* ** * ** **
22293771 CAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCTGGTGAAGAAAAATATGGCACC-GACACATG
712 CAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAG-CACATG
* * * *
22293835 CCCAAGCCTAGCATGTGCTG-CTGCAACCCTCGATCTGGTCCGATCTTAGACTGGGAATGAACTC
776 CCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTC
* * * **
22293899 CATATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACTTAC
840 CGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * ** *
22293946 GAAACGAGTGTGCAGGCGCTCAACCGGCCAGAGGGGTGGGATGGGCAAGTTGGGGATCGAC-CGG
1 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
* * * *
22294010 G-CCCCCTCTGCGTACTGCCGATCCAGCTGCCGCAACCCTCGGTCTGGTCTGATCTTATACTGGG
66 GTCCCCCTCT--GTA-T--CG-T---GCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGG
* * * *
22294074 AATTAACTTCGTATGCCTAAGCCAACTGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGG
122 AATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-CGAGCGGGCGGGCGGGCACTACGCCGG
* * * * *
22294139 CCAGAGAGGCGAGATGCGCAAGCCGTGGATCGATAGGGTGGAAAGTGGGTTTAGGGACATCTTCA
183 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
**
22294204 TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
248 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * * *
22294269 TGTGAAGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTCAAACCTTTCTGCGGT
313 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA-CTTTTTAC-GT
* * * *
22294333 TT-GAGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTG
376 TTGGA-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
22294397 TATTTTT-TCTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
440 TATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * *
22294461 ATTTGAAAAAAGTATCGCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTC
504 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
*
22294526 AAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGC
569 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
* * **
22294590 CAAGTACCAGCACCCATCGCACATCATGCGCGCACACCCCCCCCGACCCCCC-ATCACC-GAGTC
634 CAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCGATCACCGGAACC
* * ** *** ** * * * ***
22294653 CC----CC-TCGATCATCGAG-TC-CC-TCTTTGCGTATTA--ACCGAGCCCAG-C-ATG--TGT
698 CCAATGCCGTCGGTCA--G-GTTCTCCGGCGATGC-TCCGACGATGGTGCCCCGACGAAGAAAAA
* * * * * * ** *
22294704 TGCCGCAACC--CTCGAT--CTG-GTCCA--ATCTTAGACTG--GGAA---T--GAAC--TCCAT
759 TGCGGC-ACCAGCAC-ATGCCCGAGCCCAGCAT-GT-G-CTGTCGCAACCCTCGGTCCGGTCC-G
22294753 ATGCTTAGACTGGGAATG-A------A--C-T---C-------------CGTATGCCTAAGTCAA
818 AT-CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAA
22294792 CCCAC
882 CCCAC
* * * * * *
22294797 AAAATGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCGGGATGCGCAAGTCGGAGATC-GATCGG
1 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
* **
22294861 GTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTC-AGTCCAATCCGATCTTAGACTGG
66 GT--CCC-C--C-T-CTGT--ATCGTGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGG
* * * *
22294925 GGATGAACTCTGTATGCCTAAGCCAATCGATGAAACGAGCAGGCGGGCGGGCGGGTGGGCACTAC
121 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-GCGGGCGGGC----GGGCACTAC
* * * *
22294990 GTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCATAT
178 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* ** * *
22295055 CTTCATATTTTTGTGTTCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
243 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * *
22295120 CTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATATTTCATAATTTTTAAAACTTTTTG
308 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* *
22295185 CGGTTTGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
373 C-GTTTGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
*
22295250 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
437 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
22295315 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGAAAACATGGAAAATC
502 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
22295380 TCAAATTCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
567 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
22295445 GCCAAGTACCAGCACCCATCGCACATCATGTGCACACACCCCCCCAGCCCCCCCGATCACCGGAA
632 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCCCGATCACCGGAA
** * * * * *
22295510 CCCCAATGCCAACAGTCA-ATTCTCCGAG-GATGCTCCGATGATGGTACCCTGACGAAGAAAAAT
696 CCCCAATGCCGTCGGTCAGGTTCTCCG-GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * *
22295573 GCGGTACCAGCACAT-CCCTGAGCCCAGCATGTGCTGACGCAACCCTCGGTCTGATCCGATCTTA
760 GCGGCACCAGCACATGCCC-GAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTA
* * * * *
22295637 GACTAGCAATGAACTCCATATGCTTAGACTGCGAATGAACTCCATATGCCTAAGTCAACCCAC
824 GACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * *
22295700 GAAACGAGCGTGCGGGCGCTCAGCAGCCCAGAAGGGCGGGATGCGCAAGCCGGGGATC-GCTCGG
1 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
* * * ** **
22295764 GTCCCCCTCTGTATGCTGCCGATCTTGCTGCCCCCAACCCTTGGTCCGGTTTGATCTTAGGTTGG
66 GTCCCCCTCTGTA---T--CG----TGCTG-CCGCAACCCTCGATCCGGTCCGATCTTAGACTGG
* * *
22295829 GAATGAACTCCGTATGCCTAAGACAACCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACACCG
121 GAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-CGAGCGGGCGGGCGGGCACTACGCCG
* * *
22295894 GCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAAGGTGGTAGGTGGGTTCAGGCACATCTTC
182 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
22295959 ATATTTCTGCGTACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-CCTCTTAAGCCTT
247 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC-CTTAAGCCTT
** * *
22296023 CACGTGAAGTTTCATGGTGAGACGACTCGTTTTCTGTTTTTCATGATTTTTGAAACTTTTTACGG
311 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGT
* * * * * * *
22296088 TT-CAAGGTTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCGCCTAACTTGGTAGTCATGATTCTT
376 TTGGAA--TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
*
22296152 GTATTTTTGTTGGCAAT-CACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
439 GTATTTTTGTTGGC-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
* * * * *
22296216 AATTTGAAAAAAGTGTCACCAATTCAGACACTTTAATGGCTAC-AGCAACAAACCTGTAAAATCT
503 CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
22296280 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
568 CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
* * * *
22296345 CCAAGCACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCTCCCGATCATCAGAAC
633 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCACCGGAAC
* * * * **
22296410 CCCAATACCGCCAGTCAGGTTCTCCGACGATGCTCTAACGATGGTGCCCCGACGAAGAAAAATGC
697 CCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGC
* * * **
22296475 GGCAACAGCACATGCCCGAGCCTAGCATGTGCTGCCAAAACCCTCGGTCCGGTCCGATCTTAGAC
762 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGAC
** * * *
22296540 TATGAATGAACTCCGTAGGCTTAGACTGGGAATGAACTCCGTATGCCTAAGAT-AATCCAC
827 TGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAG-TCAACCCAC
* * * * * *
22296600 GAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGCCGGGATGTGCAAGCAGGGGATCAG-TCAG
1 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
* * *
22296664 GT-CCCCTCTG---CGTGCTACCGCAACCCT-TAGTCCGGTCTGATCTTAGACTGGGAATGAACT
66 GTCCCCCTCTGTATCGTGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGGGAATGAACT
* ** * *
22296724 CCATATGCCTAAGTAAACCGATGAAACGA--------GC--GC-CT--GCCTGCCAGAGAGACGG
130 CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGG
** *
22296776 GATGCGTGAGCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
195 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
22296841 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
260 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * *
22296906 TGGCAAGACGACTAGTTTTCTATTTTTCATGATTTATGAAACTTTTTACGGTTCGAGATTTTTTA
325 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGTTTGGA-ATTTTTTA
* *
22296971 AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCA
389 AAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* * *
22297036 TGCACAAAAACATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
454 TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * *
22297101 CCCCATTTCAGACACTTTAATGACCACTGACAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGG
519 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
22297166 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTGCCAGCACCC
584 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * *
22297231 ATCGCACATCATGTGCGCACACCCCCCCGGCCCACCCGTTCGCCGGAACCCCACTGCCGTCGGTC
649 ATCGCACATCATGTGCGCACACCCCCCCGGCCC-CCCGATCACCGGAACCCCAATGCCGTCGGTC
* * * *
22297296 AGGTTCTTCGACGATG-TTCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCC
713 AGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* *
22297360 TGAGCCCAGCATGTGCTGTCGCAA-CC-C--T-C-G---G-TC-----C-----A-G---TCC-A
778 CGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
* **
22297400 AT-CTTAGACTGAGAATGAACTCCATATGCCTAAGTCAAAGCAC
843 ATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCAC
* ** ** * * * *
22297443 GAAACGAGTGTATGGGCGCTTGGTCGGCCAGAGGGGTGAGATGCGCAAGCCGGGGATCGACT-GG
1 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
* * * *
22297507 GCCCCCCTCTG--T-GTGCTGCCGATCTTCCTACCACAACCATCAGTCGGTCCGATCTTAGACTG
66 GTCCCCCTCTGTATCGTGCTGCCG------CAACC-C-TCGATC---CGGTCCGATCTTAGACTG
* * *
22297569 GGAATGAACT-CATATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCAGGCACTACACC
120 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC--G--GGCACTACGCC
* * * *
22297633 GGCCAAAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGCTTAAGCACATCTT
181 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
***
22297698 CATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
246 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * * *
22297763 CACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGG
311 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGT
** * * *
22297828 TTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCTAAACTTGGTAGACGTGATCCTTG
376 TTGGA-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* *
22297893 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCA
440 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * * * *
22297958 TTTGAAAAAAGTGTCGCCATTTCAGATACTTTAATTGCTACTGGCAGCAATCCAGTAAAATCTCA
505 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
22298023 AATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCC
570 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
****
22298088 AAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATTGTTGGAACCCC
635 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGGAACCCC
* * ** *
22298152 AAT--CGCCGGTCAGGTTCTCCGACGATGCTTCCGGTGATGGTGCCACGACGAAGAAAAATGCGG
700 AATGCCGTCGGTCAGGTTCTCCGGCGATGC-TCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * * * *
22298215 CACCAACACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCTGGTCCGATCTTAGACTG
764 CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTG
*
22298280 GGAATGAACTCCGTATGCGTAGACT-AGGAATGAACTCCGTATGCCTAAGTCAACCCAC
829 GGAATGAACTCCGTATGCTTAGACTGA-GAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * * * * * *
22298338 GAAACAAGCTTGCGGGCGCACAGTCGACCAAAAGGGCAGGATGCACAAGCCGGGGATC-GATCAG
1 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
* * * * *
22298402 GTCCCCCTCTGCGTGCTGTCGATCCTGCTACTGCAACCCTCGATCTGGTCTGATCTTAGACTGGC
66 GT-CCCC-CT-C-TG-TATCG-TGCTGC--C-GCAACCCTCGATCCGGTCCGATCTTAGACTGGG
** *
22298467 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGATGGGCACTACACCGGCCAG
122 AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAG
* * *
22298528 AGAGACAGGATACGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
187 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
22298593 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCACGTG
252 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * ** *
22298658 AACTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTTACGAAACTTTTTACGGTTTGGG
317 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-GTTTGGA
*
22298723 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCCAAACTTGGTAGACGTGATCCTTGTAATT
381 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTT
*
22298788 TT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTG-
445 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* * *
22298851 AAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAGACCTGTAAAATCTCAAATAC
510 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * *
22298916 TCTTTAAGGGGGTGTGAGTTCTCTAGGTTTGATGAGGGATAGAGGGCCAATATGAGGG-CAAGTA
575 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
** *
22298980 CCAGCACGTAAT-GCACATCATGTGTG--CA-CCCCCCGGCGCCCCCGATCACCGGAACCCCAAT
640 CCAGCAC-CCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCCGATCACCGGAACCCCAAT
* * * * * *
22299041 ACCGCCAGTCAGATTCT----C--TG----G-TGATGGTGCCCCGACGAAGAAAAATGTGGCACC
703 GCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* *
22299095 AGCACATGCCCGAGCCCGGCATGTGCTG-CTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGA
768 AGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGA
* * *
22299159 ATGAACTTCGTATGCTTAGACTGCGAATGAACTCCGTATGGCTAAGTCAACCCAC
832 ATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * *
22299214 GAAACGAGCGTGCGGGCGCTTAGTCGGCTAGACGGGCGGGATACGCAAGCTGGGGATCGG-TCGG
1 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
* * ** *
22299278 GTCCCCCTCTGCGTGTTGTCGATCCTACTGTTGCAAGCCTC-AGTCCGGTCCGATCTTAGACTGG
66 GT-CCCC-CT-C----TGT--ATCGTGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGG
* * *
22299342 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCACTATGCCAGCCA
121 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCA
*
22299407 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATAT
186 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
*
22299472 TTCAGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
251 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* *
22299537 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGG
316 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-GTTTGG
* *
22299602 GATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GCCCCAAACTTGGTATACGTGATCCTTTTATGT
380 AATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC---T-TGT
* **
22299666 ATTTTTTTTGGCATGCACACTAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
441 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
22299731 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGTAAACGTGTAAAATCTCAA
506 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
22299796 ATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCA
571 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * ***
22299861 AGTACCAGCACCCATCGTACATCATGTGCGTACACCCCCCCTGGCCCCCCTGATTGTCGGAACCC
636 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GGCCCCCC-GATCACCGGAACCC
* *
22299926 CAATGCCG-CTGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCAGACGATGGTGCCCCGG
699 CAATGCCGTC-GGTCAGGTTCTCC---G--G---C---GATGCT--CC-GACGATGGTGCCCCGA
* * * * * *
22299990 TGAAGAAAAATGTGGCACCAGCACATGCCCGAGCGCAGCATGTGCTGTCGTAACCCTCGATCCAG
749 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGG
22300055 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-AGGAATGAACTCCGTATGCCTAAG
814 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGA-GAATGAACTCCGTATGCCTAAG
*
22300119 TCAACCCAT
878 TCAACCCAC
* * * *
22300128 GAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGACT-GT
1 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
* *
22300192 GTCCCACTCTAGGTGCTATCGATCATGCTGCCGCAACCCTC-AGTCCGGTCCGATCTTAGATTGG
66 GTCCC-C-CT--CTG-TATCG----TGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGG
* * * *
22300256 GAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGGACGAGCGAGCGGCCACAAT
121 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-C--G-G-GCGGGCACTAC
* * *
22300321 GCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGTACAT
178 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
22300386 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
243 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
22300451 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTT
308 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTT
** * * * *
22300516 TGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GTCCCAAACTTGGTATACGTGATCC
372 ACGTTTGGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
22300580 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGA
437 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* ** *
22300645 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAATAAACGTGTAAAATC
502 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
22300710 TCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATACGGGGCCAATATAAGA
567 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * ***
22300775 GCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCTGGCCCCCCCGATTGTCGGAA
632 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCACCGGAA
* ** *
22300840 CCCCAATGCCGTCGGTCAGGTTCTCCAATGATGCTCCGGTGATGCTTCGGTGATGGTGCCCCGAT
696 CCCCAATGCCGTCGGTCAGGTTCTCC---G--G---C---GATGCTCCGACGATGGTGCCCCGAC
* * * ** * * *
22300905 GAAGAAAAATGTGGCACCAGCACATGCCTGAGCGCAGCATGTGCTACCGTAACCCTCGATCCAGT
750 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGT
*
22300970 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
815 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTC
*
22301035 AACCCAT
880 AACCCAC
* * * * *
22301042 GAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATTGGCT-GT
1 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
* * * *
22301106 GTCCTGCTCTAGGTGCTATCGATCATGCTGCCGCAACCCTC-AGTCCGATCCGATCTTAGATTGG
66 GTCC--CCCT--CTG-TATCG----TGCTGCCGCAACCCTCGA-TCCGGTCCGATCTTAGACTGG
* * *
22301170 GAATGAACTCCGTATGCCGAAGCCAACCGATGAAACGAGCGGGCGGGCGAGCAGGCGGCCACAAC
121 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-G-GC--G-GG-CACTAC
* * * *
22301235 GCCAGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTATGCACAT
178 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
22301300 CTTCATATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
243 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
22301365 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
308 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
* * * * *
22301430 CGGTTCGAGATTTTTTAAAACTTTTTCGGAAGGAGTTTTGGGCCGAAACTTGGTAGACGTGATCC
373 CGTTTGGA-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
22301495 TTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
437 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
22301560 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
502 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
22301625 TCAAATGCTCTTTAAGGGGGTGAGAGTTCTCGAGGTTTGATGAGGGATAAGGAGCCAATATAAGG
567 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
22301690 GCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCACCCCGGCCCCCC
632 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
22301743 TATCGTCGGA
Statistics
Matches: 8316, Mismatches: 907, Indels: 699
0.84 0.09 0.07
Matches are distributed among these distances:
842 1 0.00
843 83 0.01
844 18 0.00
845 3 0.00
848 2 0.00
849 3 0.00
850 6 0.00
851 72 0.01
852 68 0.01
853 1 0.00
854 30 0.00
855 29 0.00
856 411 0.05
857 70 0.01
858 8 0.00
859 10 0.00
860 1 0.00
861 2 0.00
862 6 0.00
863 6 0.00
864 12 0.00
865 2 0.00
866 2 0.00
867 27 0.00
868 13 0.00
869 472 0.06
870 187 0.02
871 462 0.06
872 6 0.00
873 5 0.00
874 2 0.00
875 14 0.00
876 268 0.03
877 34 0.00
878 30 0.00
879 141 0.02
880 232 0.03
881 8 0.00
882 135 0.02
883 526 0.06
884 594 0.07
885 280 0.03
886 80 0.01
887 37 0.00
888 144 0.02
889 309 0.04
890 45 0.01
891 12 0.00
892 8 0.00
893 12 0.00
894 6 0.00
895 81 0.01
896 157 0.02
897 35 0.00
898 10 0.00
899 240 0.03
900 944 0.11
901 16 0.00
902 2 0.00
903 85 0.01
904 67 0.01
905 1 0.00
906 5 0.00
907 5 0.00
908 92 0.01
910 11 0.00
911 4 0.00
912 3 0.00
913 13 0.00
914 797 0.10
915 253 0.03
916 2 0.00
917 56 0.01
918 240 0.03
919 1 0.00
920 1 0.00
921 1 0.00
922 253 0.03
923 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCTCGG
GTCCCCCTCTGTATCGTGCTGCCGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGG
ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGC
CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGTTTGGAATTTTTTAAA
ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
CGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGG
TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
GCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
CTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCAC
Found at i:22294759 original size:26 final size:26
Alignment explanation
Indices: 22294730--22294782 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22294720 CTGGTCCAAT
22294730 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
22294756 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
22294782 C
1 C
22294783 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:22295673 original size:26 final size:26
Alignment explanation
Indices: 22295633--22295685 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22295623 CTGATCCGAT
22295633 CTTAGACTAGCAATGAACTCCATATG
1 CTTAGACTAGCAATGAACTCCATATG
22295659 CTTAGACT-GCGAATGAACTCCATATG
1 CTTAGACTAGC-AATGAACTCCATATG
22295685 C
1 C
22295686 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGCAATGAACTCCATATG
Found at i:22296562 original size:26 final size:26
Alignment explanation
Indices: 22296533--22296582 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
22296523 CCGGTCCGAT
*
22296533 CTTAGACTATGAATGAACTCCGTAGG
1 CTTAGACTAGGAATGAACTCCGTAGG
*
22296559 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
22296583 TGCCTAAGAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTAGG
Found at i:22298302 original size:26 final size:26
Alignment explanation
Indices: 22298273--22298323 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
22298263 GGTCCGATCT
*
22298273 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTAGGAATGAACTCCGTATGCG
22298299 TAGACTAGGAATGAACTCCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
22298324 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCG
Found at i:22299186 original size:26 final size:26
Alignment explanation
Indices: 22299147--22299198 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
22299137 CCGGTCTGAT
* *
22299147 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
22299173 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
22299199 GCTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:22300090 original size:26 final size:26
Alignment explanation
Indices: 22300061--22300113 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22300051 CCAGTCCGAT
*
22300061 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22300087 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
22300113 C
1 C
22300114 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:22300901 original size:914 final size:913
Alignment explanation
Indices: 22299060--22301742 Score: 4359
Period size: 914 Copynumber: 2.9 Consensus size: 913
22299050 CAGATTCTCT
* * *
22299060 GGTGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCGGCATGTGCTGCT
1 GGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCGCAGCATGTGCTGC-
* * * * *
22299125 GCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGCGAATGAA
65 GTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG-GAATGAA
* * * * * *
22299190 CTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGTCGGCTAGACGGGCGGGA
129 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * * * * * ** *
22299255 TACGCAAGCTGGGGATCGGTCGGGTCCCCCTCT-GCGTGTTGTCGATCCTACTGTTGCAAGCCTC
194 TGCGCAAGCTGGGGATCGCT-GTGTCCCACTCTAG-GTGCTATCGATCATGCTGCCGCAACCCTC
* *
22299319 AGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-
257 AGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAG
* * *
22299380 GCGGAC--G-G-GCGGGCACTATGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
322 GCGGACGAGCGAGCGGCCACAATGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
* * *
22299441 GTGGTAGGTGGGTTTAGGCACATCTTTATATTTCAGCATGCCAATGCCATTTTTATGGCTTGTAA
387 GTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
22299506 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
452 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
22299571 TTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCC
517 TTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCC
**
22299636 CCAAACTTGGTATACGTGATCCTTTTATGTATTTTTTTTGGCATGCACACTAAAATTCAGCTAAA
582 CCAAACTTGGTATACGTGATCC---T-TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
22299701 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
643 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
22299766 GCTATTGGCAGTAAACGTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTG
708 GCTATTGGCAGTAAACGTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTG
*
22299831 ATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGTACAC
773 ATGAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA-
* *
22299896 CCCCCCTGGCCCCCCTGATTGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGATGATGCTCCG
837 CCCCCCTGGCCCCCCCGATTGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCAATGATGCTCCG
*
22299961 GTGATGGTGCCCA
902 GTGATGCT-CCCA
** *
22299974 GACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCGCAGCATGTGCTGTC
1 GGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCGCAGCATGTGCTG-C
22300039 GTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAA
65 GTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAA
*
22300104 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGA
129 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
22300169 TGCGCAAGCTGGGGATCGACTGTGTCCCACTCTAGGTGCTATCGATCATGCTGCCGCAACCCTCA
194 TGCGCAAGCTGGGGATCG-CTGTGTCCCACTCTAGGTGCTATCGATCATGCTGCCGCAACCCTCA
22300234 GTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGG
258 GTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGG
*
22300299 CGGACGAGCGAGCGGCCACAATGCCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
323 CGGACGAGCGAGCGGCCACAATGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGG
*
22300364 TGGTAGGTGGGTTTATGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
388 TGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
22300429 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
453 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* *
22300494 TCATGATTTTTGAAACTTTTTTTGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGTCC
518 TCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCC
22300559 CAAACTTGGTATACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
583 CAAACTTGGTATACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
22300624 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAT
648 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAT
*
22300689 TGGCAATAAACGTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAG
713 TGGCAGTAAACGTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
22300754 GGATACGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCC
778 GGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCC
22300819 TGGCCCCCCCGATTGTCGGAACCCCAATGCCG-TCGGTCAGGTTCTCCAATGATGCTCCGGTGAT
843 TGGCCCCCCCGATTGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCAATGATGCTCCGGTGAT
*
22300883 GCT-TC-
907 GCTCCCA
* *
22300888 GGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCTGAGCGCAGCATGTGCTACC
1 GGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCGCAGCATGTGCT-GC
22300953 GTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
65 GTAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAA
* *
22301018 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCAGGA
129 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* **
22301083 TGCGCAAGCTGGGGATTGGCTGTGTCCTGCTCTAGGTGCTATCGATCATGCTGCCGCAACCCTCA
194 TGCGCAAGCTGGGGA-TCGCTGTGTCCCACTCTAGGTGCTATCGATCATGCTGCCGCAACCCTCA
* * *
22301148 GTCCGATCCGATCTTAGATTGGGAATGAACTCCGTATGCCGAAGCCAACCGATGAAACGAGCGGG
258 GTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGG
* * *
22301213 CGGGCGAGC-AGGCGGCCACAACGCCAGCTAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
323 CGGACGAGCGA-GCGGCCACAATGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGG
*
22301277 GTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATGGCTTGTAA
387 GTGGTAGGTGGGTTTATGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
22301342 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
452 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * *
22301407 TTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAACTTTTTCGGAAGGAGTTTTGGG
517 TTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT-GC
* * *
22301472 CCGAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAAC
581 CCCAAACTTGGTATACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
22301537 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
646 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * * *
22301602 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTCGAGGTTTGATG
711 ATTGGCAGTAAACGTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
22301667 AGGGATAAGGAGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCAC
776 AGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACC-C
22301732 CCC-GGCCCCCC
840 CCCTGGCCCCCC
22301743 TATCGTCGGA
Statistics
Matches: 1659, Mismatches: 92, Indels: 35
0.93 0.05 0.02
Matches are distributed among these distances:
913 1 0.00
914 829 0.50
915 259 0.16
916 6 0.00
917 69 0.04
918 232 0.14
919 1 0.00
920 1 0.00
921 1 0.00
922 260 0.16
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (913 bp):
GGTGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCGCAGCATGTGCTGCG
TAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACT
CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
CGCAAGCTGGGGATCGCTGTGTCCCACTCTAGGTGCTATCGATCATGCTGCCGCAACCCTCAGTC
CGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCAGGCGG
ACGAGCGAGCGGCCACAATGCCAGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTATGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
TGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCCAA
ACTTGGTATACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGG
CAGTAAACGTGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
TACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACACCCCCCTGG
CCCCCCCGATTGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCAATGATGCTCCGGTGATGCTC
CCA
Found at i:22301004 original size:26 final size:26
Alignment explanation
Indices: 22300975--22301027 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
22300965 CCAGTCCGAT
22300975 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22301001 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22301027 C
1 C
22301028 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:22303483 original size:26 final size:26
Alignment explanation
Indices: 22303433--22303485 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22303423 CTGGTTCCAT
**
22303433 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
22303459 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
22303485 C
1 C
22303486 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.