Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 132 of 195
Found at i:22304212 original size:26 final size:26
Alignment explanation
Indices: 22304183--22304235 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22304173 CCGGTCTGAT
** *
22304183 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTACGAATGAACTCCGTATG
*
22304209 CTTAGTCTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
22304235 C
1 C
22304236 CTAAGTCAAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:22305092 original size:26 final size:26
Alignment explanation
Indices: 22305063--22305113 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
22305053 TGGTCTGATC
*
22305063 TTAGACTGGGAATGAACTCTGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
22305089 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
22305114 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:22306915 original size:26 final size:26
Alignment explanation
Indices: 22306864--22306916 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22306854 CCGATTCGAT
* *
22306864 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
*
22306890 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
22306916 C
1 C
22306917 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:22307796 original size:25 final size:26
Alignment explanation
Indices: 22307759--22307808 Score: 68
Period size: 25 Copynumber: 2.0 Consensus size: 26
22307749 TGGTCCCGAT
22307759 CTTAAACTGAG-AATGAACTCCGTATG
1 CTTAAACTGAGAAATG-ACTCCGTATG
*
22307785 CTTAGACT-AGAAATGACTCCGTAT
1 CTTAAACTGAGAAATGACTCCGTAT
22307809 ACCTAAGTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
25 11 0.50
26 11 0.50
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (26 bp):
CTTAAACTGAGAAATGACTCCGTATG
Found at i:22309658 original size:873 final size:874
Alignment explanation
Indices: 22303550--22313631 Score: 11123
Period size: 873 Copynumber: 11.4 Consensus size: 874
22303540 ATGAGCAAGC
22303550 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
22303615 TTAGGCACATCTTCATATTTTTGCGTGCCAATTCCATTTTTACGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
22303680 TCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCATGATTTTTA
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
** * *
22303745 AAACTTTTTGTGGTTCAAGATTTTTTTAAAATTTTTTC-AGAAGGAGTTTTAGCCCCAAACTTGG
196 AAACTTTTTACGGTTCGAGA-TTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGG
*
22303809 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGGTAAAAACTCGAAGTGTACA
259 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAACTCGAAGTGTACA
*
22303874 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAA
324 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
22303939 CCTATAAAATATCAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGGGATAGGGGG
389 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * * *
22304004 CCAATATAATGGCCAAGTACCAGCACCCTTCACATATCATTTGCGCACACCCCCTCGGCCCCCTC
454 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCC
* ** * * ** * *
22304069 GATCATCAAAACCCCAATACCGCCGGTCAGGTTCTCTGGCGATGCTCCGATGATGGTGGCCC-A-
518 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGAC
* * ** * ** * * ** **
22304132 GCA-CATGAT-CGAGC-CCAACATGTGCTACCGCAACCTTCGGTCCGGT-CTGATCTTAGA--CT
583 GAAGAAAAATGCG-GCACCAGCACATGC--CCG-AGCC--CAG-CATGTGCTG-TCGCA-ACCCT
* ** * * ** *
22304191 GGGAATGAACTCTGTATGCTTAGTCTACGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACG
639 CGGTCTG-A-TCAG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
** * * ** **
22304256 AGCGTGC-GG-G-T---CC-TTC------TC----TGCACAAGCCAGGGATCAACTGGGTCCTTC
700 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGTC-GGGTCCCCC
* * * * * *
22304304 TCTGCATACTACCGATCCTACTACCGCAACCCTC-GATCTGGTCCAATCTTAGACTGGGAATGAA
764 TCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAG-TCTGGTTCGATCTTAGACTGGGAATGAA
* *
22304368 GTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-GGCGGA
828 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGA
* *
22304412 ----CACTACGTCGGCCAGAGAGACGGGATGCCCAAGCCGTGGATCGATAGGGTGGTTGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
22304473 TTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
22304538 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTCA
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
* * * *
22304603 AAATTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC-AGATGGCGTTTTGGCCCCAAACTTGGT
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGGT
* ** * *
22304667 AGACGTAATTGTTGTATTTTTGTTGGCATGCCCAAAAATATTCAGCTAAAAACTCGAAGTGTACA
260 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATCAGCTAAAAACTCGAAGTGTACA
* * * * *
22304732 AGATTTTGTGACCATCTGTAAAAAGTGTCCCCATTTTAAATACTTTAATGGCTACTGGCAGCAAA
324 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
22304797 CCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
389 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
22304862 CCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGTGCGCACATCCCCCCGGCCCCCCC
454 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCC
* * * * * * *
22304927 GATCGTCGAAACCCAAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCC-GTCAATGGTGCCCTGG
518 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGT-GATGGTGCCCCGA
* ** *
22304991 CAAAGAAAAATGCGGCACCAGCACATGTTCGAGCACAGCATGTGCTG-CTGCAACCCTCAGTCTG
582 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAA-CC-C--TC-G
22305055 GTCTGATCTTAGACTGGGAATGAACTCTGTATGTTTAGACTGGGAATGAACTCCGTATGCCTAAG
641 GTCTGA---T---C-----A-G-A-TC-------TTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * *
22305120 TCAACCCATGAAACAAGCGTGCGGGCGTTCAACCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGA
685 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGA
** * * * * **
22305185 TCGATCGGGTCTGCCTTTGCGTGTTCCCAATCCTGCTGCCGCAACCCTCAGTCCAG-TCTGATCT
750 TCG-TCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTTC-GATCT
* * * *
22305249 TAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCGGGCAGGA
813 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGC-GGA
* *
22305313 GGGCGGGTACTACGACGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
1 ---CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
22305378 GGTTTAGGCACATCTTCATATTTTTTCGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
63 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * * *
22305443 TGGTCCCTCAAGCCTTCACCTCAGGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTAAGATTT
128 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
** * * * *
22305508 TTGAAACTTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACTT
193 TCAAAAC-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
* **
22305573 AGTTA-ATATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AGAGT
257 -GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCGA-AGT
*
22305636 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCA
319 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* ** *
22305701 GCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACATTTGATGACGGATA
384 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
22305766 AGGGGCCAATATATGGGCCAAGTACCAGCACCCTTTGCACATCATGTGCGCACACCCCCCCGGCC
449 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
* ** *
22305831 CCCCCGATCGTCGAAACCCCAATGTAGTCGGTCAGGTTCT-C--TG--G---C---GATGGTGCC
513 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCC
* * * *
22305885 CCGACAAAGAAAAATGCGACACTAGCACATGACCGAGCCCAGCATGTGCTGTCGCAACCCTCGGT
578 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGT
* * *
22305950 CCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTTCGTATGACT
643 -C--T--GA---T---C---------A----G-AT-CTTAGACTGGGAATGAACTCCGTATGCCT
* *
22306015 AAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAA
682 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG
* ** * *
22306080 GGATCGGTTGGGTCCTTCTCTGCGTGCTACCGATCCTGCTGCCGTAACCCTCAGTCCGGTGT-GA
747 GGATC-GTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGT-TCGA
* * * **
22306144 TCTTAGACTAGCAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGTTGGCGGGCGTGCAG
810 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG-GC-G
22306209 G-
873 GA
* * * * *
22306210 CGGGTACTATG-CAGGCCAGAGAGACGGGAAGCGCAAGCCGTGGATCGATAGGTTGGCAGGTGGG
1 CGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
22306274 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
65 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
22306339 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
130 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
* *
22306404 AAAACTTTTTACAGTTC-AGGATTTTTTAAAACTTTTTTC-AAAGGAGTTTTGGGCCCAAACTTG
195 AAAACTTTTTACGGTTCGA-GATTTTTTAAAA-TTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
*
22306467 GTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTA
258 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATCAGCTAAAAACTCGAAGTGTA
* * * *
22306532 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCGGACACTTTAATGGCTACTAGTAGCA
322 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
22306597 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGG
387 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
22306662 GCCCAATATAAGGGTCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC
452 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCC
* * ** ** *
22306727 CCGATCATTGGAACCCCAATGCCGCCAATCAGGTTCTCCGGCGATGCTCCAGTGATGGTGCCCC-
516 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCG
*
22306791 AGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTCGGTCC
581 A-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGT-C
*
22306856 GATTCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAA
644 ---T-GA---T---C---------A----G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAA
*
22306921 GTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GAG
684 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-G
* * * * * * **
22306985 GATCGATCGGGTCCCACTTTACGTGCTATCGATCCTACTGCCGTAACCCTCAGTCTGGCCCGATC
748 GATCG-TCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTTCGATC
*
22307050 TTAGACTGGGAATGAACTCCGTATGCCAAAGCCAACCGACGAAACGA----GCGGGC-G-GG-
812 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGA
* *
22307106 CGGGCACTACGTCGGCCAGAGAGACGGGAT-CGCAAGCCGTGGATCAATAGAGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
22307170 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * **
22307235 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTCTTCTTTTTTTCACGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
* *
22307300 AAACTTTTTACAGTTTGAGATTTTTTAAAATTTTTTCGAAA-G-GTATTTGAGCCCCAAACTTGG
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGT-TTTG-GCCCCAAACTTGG
** * *
22307363 TAGATATGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATCAACTAAAAACTCGAAAGTGTAC
259 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAACTCG-AAGTGTAC
* *
22307428 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGTAA
323 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
22307493 ACCTTTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGG
388 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * **
22307556 GCCAATATAAGGGCCAAGTACTCGGCACCCATCGCACATCATGTGCGTACACACCTCCGAACCCC
453 GCCAATATAAGGGCCAAGTAC-CAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCC
* ** * * **
22307621 CCGATCGTCGGAATCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCTGACGATGGTGCCCCG
516 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCG
* ** * *
22307686 ACAAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCTAG-CGTAACCCTCGGTCT
581 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT-GTCGCAACCCTCGGTCT
* * * *
22307750 GGTCCCGATCTTAAACTGAGAATGAACTCCGTATGCTTAGACTAGAAATGACTCCGTATACCTAA
645 GAT-CAGATCTTAGACTGGGAATGAACTCCGTATGC-----CT---AA-G--T-C--A-ACC---
* * * *
22307815 GTACAAACCATGAAACGAGTGTGCGGGCGCCCAGTCGGCCAGAGGGGCCAGGGATGCGCAAGCCG
691 ---C--A-C--GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG-C-GGGATGCGCAAGCCA
** * * * * *
22307880 GGGATCAAACCGAGT-CCCCTCTGCGGTGCTGCCGA-CTTGCTACCGACATCCGGCTC-GTAACT
746 GGGATC--GTCGGGTCCCCCTCTGC-GTGCTACCGATCCTGCTGCCG-CAACC--CTCAGT--CT
* * * *
22307942 -GTTCCGATCTTAGACTGGGAGTGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGCGGGTGG
803 GGTT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
*
22308006 GCAGGC-AA
867 GC-GGCGGA
* * *
22308014 GCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGG
1 -CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
22308079 TTTAGGCACATCTTCATATTTCTTCATTCCAATTCCATTTTTATGGCTTGTAAATTCATACAATG
65 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
22308144 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTT
130 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
* * * * *
22308209 GAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTTCGGAAA-GACTTTTGGCCCCAAACTTG
195 AAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTC-GAAAGGAGTTTTGGCCCCAAACTTG
* * *
22308273 GTAGACGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
258 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCGAAGTGTA
*
22308338 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCA
322 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
22308403 AACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGTGATAGGG
387 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
22308468 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCAG-CCCCC
452 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
** * * * * * ** *
22308532 CGATCACCGGAACCCCAACGCTGTCGGTCAGGTTCTCCAATGATGCTCCGGCGATGGTAACGC-A
517 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGA
* * * * * * * *
22308596 GTGAAGAAAAATGTGACACCAGCACATGCTCGAGCACAGCATGTGCTGCCACAACCCTCGGTCCG
582 -CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTG
* * * * * *
22308661 GTCTGATGTCAGA-TAGGGAATGAACTCCATGTGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
646 ATCAGATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * *
22308725 CGTTCAGCCGGCCAGAGGGGCGAGATGCGCAAGCCATGGATCGGTCGGCTCCCCCTCTGCGTGCT
710 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATC-GTCGGGTCCCCCTCTGCGTGCT
** * * *
22308790 GTCGATCCTGCTACCGCAACCCTCAGTTTGGTTCGATCTTAGACTGTGAATGAACTCCGTATGCC
774 ACCGATCCTGCTGCCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCC
*
22308855 TAAGCCAACCGACGAAAGGAGCGGGCGGGCGGACGGA
839 TAAGCCAACCGACGAAACGAGCGGGCGGGCGG-CGGA
* * **
22308892 CGGGCACTACGTCGGCCAGAGAGACGAGATGCACAAGCCGTGGATCGATAGGGTGGTTCGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
22308957 TTAGGCACATCTTCATATTTCTACGTGCCATTGCCA-TTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * **
22309021 TCCCTTAAGCCTTCACATGAAGTTTCATGGTAAGACGACTCATTTTCTATTTTTCACAATTTTCA
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
* *
22309086 AAAGTTTTTACGGTTCGAGATTTTTTAAACTTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
22309151 GACGTGATCCTTGTATTTTTGTTGGCATGTACAAAAAAA-CAGCGAAAAACTTGAAGTGTACAAG
261 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAACTCGAAGTGTACAAG
* * *
22309215 ATTTTGTGACCATTTGAAAAAAGTGTCACCATTTTAGACACTTTAATAGCTACTGGCAGCAAACC
326 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
22309280 TATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAATTCTCTAGGTTTGATGAGGGATAGGGGGCC
391 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
22309344 AATATAAGGTCCAAGTACTAGCACCTATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
456 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * * * *
22309409 CGTTGGAACCCCAATGCTGCCCGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCAACGAA
521 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGACGAA
* * *
22309474 GAAAAATACGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGATCAG
586 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGATCAG
* * * *
22309539 ATCTTAGACTGGGAATGAACTCCATATGCCTACGTCAACCCACGAAACGAGCATGCGGGTGCTCA
651 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
22309604 GTCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCAGTCGGGTCCCACTCTGCGTGCTGCCGAT
716 GCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATC-GTCGGGTCCCCCTCTGCGTGCTACCGAT
* ** * * * *
22309669 CTTGCTATCGTAACCCTTAGTCCGG-TCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGC
780 CCTGCTGCCGCAACCCTCAGTCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * *
22309733 CAACCGATGAAACAAGCAGACGGGCAGGCGGG
844 CAACCGACGAAACGAGCGGGCGGGC-GGCGGA
* * * * *
22309765 CGGGCACTACG-CAGGCCAGAGGGACGAGATGCGTAAGCCGTAGATCGATAGGGTGTTAGGTGGG
1 CGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
22309829 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
65 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
22309894 GTCCCTTAAGCCTTCACATTAAGTTTCATGGCAGGACGACTCGTCTTCTATTTTTCATGATTTTT
130 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTC
* * * * *
22309959 GAAACTTTTTGA-GGTTCG-GAATATTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAAGTTG
195 AAAACTTTTT-ACGGTTCGAG-ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
* * * *
22310022 GTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAACAATTTAGCT-AAAACTCGAAGTGTA
258 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATCAGCTAAAAACTCGAAGTGTA
* *
22310086 CAAGATTTTGTGACCATTTAAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCA
322 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
22310151 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGG
387 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
22310216 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCTCACCCCCCCCAGCCCC
452 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCGGCCCC
* * * * * * * *
22310281 CCCGATCATCGAAAACCCAATGTCGTCGGTCAGGTTCTTC-AGTGATGCTCTGGCGATGGTGCCC
515 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA-TGATGCTCCGGTGATGGTGCCC
* *** * **
22310345 CGATGAAGAAAAATGCAATACGAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
579 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTC
* * * * * ** *
22310410 CGGTCCGATCTTAGACTGGGAATCAACTCTGTATGCCTAAGTCAACCCATAAAACAAGCGTGCGG
644 TGATCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * *
22310475 GCACTTAGGCGGCCAGAGGGGTGGGATACGCAAGCC-GAGGATCGGTCGGGTCCCCCTCT-CTGT
709 GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GGATC-GTCGGGTCCCCCTCTGC-GT
* * ** * * * * *
22310538 GCTACCAATCCTGTTGTTGCAACCCT-TGATC-CGATCTAATCTTAGACTAGGAATGAACTCCGT
771 GCTACCGATCCTGCTGCCGCAACCCTCAG-TCTGGTTC-GATCTTAGACTGGGAATGAACTCCGT
*
22310601 ATGCCTAAGCCAACCGACGAAAC-A---AGCGGGC-G-GG-
834 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGA
* * *
22310635 CGGGCACTGCGTCGGCTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
22310700 TTAGGCACATCTTCATACTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * * **
22310765 TCCCTTAAGCCTTCACGTGATGTTTCATGGCAAGACGAGTCATTTTCTATTTTTTAGGATTTTTG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
* * ** * *
22310830 AAACTTTTTACGGTTC-AGGATTTTTTAAATTTTTTTCGGAATTATTTTTGGCCCCAAACTTAGT
196 AAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
22310894 AGACGTGATCCTTGTATTTTTTTTCGCATGGACAAAAAAATTCAGCTAAAAACTC-AGGGTGTAC
260 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCGA-AGTGTAC
* * *
22310958 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAAACTTTAATGGCTACTGGAAGCAA
323 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
22311023 ACCTGTAAAATCACAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAG
388 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* ** * *
22311088 GCCAATATAATGGCCAAGTACCAAAACCCATCGCACATCATGTGCGCCCACCCCCCCTCGACCCC
453 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCC-CGGCCCC
* ** * ***
22311153 TCATATCG-CTGGAACCCCAATGCCGCCGGTCAGGTTCTCTGATGATGCTTTAGTGATGGTGCCC
515 CCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCC
* ** *
22311217 CGACGAAGAAAAATACGGCTTCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTC
579 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC----T-
22311282 CGGTCTGATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
639 CGGTCTGA---T---C---------A----G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTA
* * *
22311347 AGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCAGG
683 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG
* * * * ** ***
22311412 GATCGGTCGGGTCCCCCTCTGCGTGTTGCCGATCCTGCCGCCGCAATCCTTGGTC-CAATCTGAT
748 GATC-GTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTTC-GAT
* * * * *
22311476 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGATGAAACAAGCGGGCGGACGGGCGGG
811 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGCGGA
* *
22311541 TGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
22311606 TTAGGCACATCTTCATATTTCTACATGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* ** *
22311671 TCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCAATTTCTATTTTTCATGATTTTCG
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
* * * * *
22311736 AAACTTTTTACAGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGCCCCCTAACTTGTT
196 AAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
22311800 AGATGTGATCCTTGTATTTTTTTTGGCCTGCACAAAACAATTCAGCTAAAAACTCGAAGTGTATA
260 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATCAGCTAAAAACTCGAAGTGTACA
* * *
22311865 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTATAATGGCTACTAGCAGCAAA
324 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
22311930 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
389 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** * * **
22311995 CCAATATAAGGGCCAAGTACCAGCACCCATCATATATCATGTGCGCACACCCCCTGGCCCCATCG
454 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * **
22312060 ATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACG
519 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGACG
* * *
22312125 GAGAAAAATGCGTCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTTGGTCCGGTC
584 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC----T-CGGT-
* *
22312190 CGATTTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGGAATGAACTCCGTATGCCTGAGTCA
643 C-----T-GA-T---CA-G-A-----T---CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
22312255 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGAT-CG---G-C-----T--
688 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCG
* * * * * * * *
22312308 T--GGTCCCCCTCTACGTGCTATCGATCCTGCTACCGTAACCCTCGGTTTGATCCGATCTTAGAC
753 TCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTTCGATCTTAGAC
* *
22312371 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGACGGGCGGG
818 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---G-CGGGCGGGC-GGCGGA
* * *
22312433 CGGGCATTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATTGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
22312498 TTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * ** * * *
22312563 TCCCTTAAGCCTTCACGTGATGTTTCATGGCATGATAAATCGTTTTCTATTTTTCACGATTTT-G
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
* * *
22312627 AAACCTTTTACGGTTC-AGGATTTTTTAAAATTTTTTCG-AAGTAGTTTTGGACCCAAACTTGGT
196 AAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
22312690 AGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTTACCTAAAAACTTGAAGTGTACA
260 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCGAAGTGTACA
* * * * *
22312755 AGATTTTGTGGCCATTTGAAAAAATTATCCCCATTTCAGAAACTTTAATGGCTACTGGAAGCAAA
324 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * * * *
22312820 CCTGTAAAATATCAAATGCACTTTAAAGGGGTATGAGTTCTCGAGGTTTGATAAGCGATAGGGGC
389 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
22312885 CCAATATAAGGGGCAAGTACCAGCACCCTTCGCACATCATGTGCGCACACCCGCCCCGACCCCTC
454 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCCCCC
* * *
22312950 CGATCATCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGA
517 CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGA
* **
22313015 CGAGGAAAAATGCATCACCAGCACATGCCC--G---AGC-----C--T----A------G-C--A
582 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGA
* * * * * *
22313055 T--G----TAAACTGGGAATGAACTCTGTATGCCTAAGTCAACCTACAAAACGAGCGTGTGGGCA
647 TCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * *
22313114 CTCAGCCGGCCAGAGGGGAGGGATACGCAAGCTAGGGATCGATCGGGTCCCCCTCTGCGTGCTAC
712 CTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCG-TCGGGTCCCCCTCTGCGTGCTAC
* * *
22313179 CAATCCTGCTGTCGCAACCCTC-GATCTGG-TCTGATCTTAGACTGGTAATGAACTCCGTATGCC
776 CGATCCTGCTGCCGCAACCCTCAG-TCTGGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCC
* *
22313242 TAAGCCAACCGACGAAACGAGTGGGCGGGCGAGCGGG
839 TAAGCCAACCGACGAAACGAGCGGGCGGGCG-GCGGA
*
22313279 CGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
1 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
***
22313344 TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
66 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
22313409 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCA
131 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
* * * *
22313474 AAATTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACGTGGTA
196 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* *
22313539 GACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
261 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCGAAGTGTACAA
22313604 GATTTTGTGACCATTTGAAAAAAGTGTC
325 GATTTTGTGACCATTTGAAAAAAGTGTC
22313632 TCACTTTGCG
Statistics
Matches: 7939, Mismatches: 982, Indels: 612
0.83 0.10 0.06
Matches are distributed among these distances:
835 71 0.01
836 2 0.00
839 1 0.00
845 2 0.00
846 193 0.02
847 35 0.00
848 109 0.01
849 2 0.00
850 89 0.01
854 1 0.00
855 3 0.00
856 4 0.00
857 81 0.01
858 445 0.06
859 8 0.00
860 3 0.00
861 7 0.00
862 13 0.00
863 2 0.00
865 1 0.00
866 1 0.00
869 27 0.00
870 266 0.03
871 193 0.02
872 195 0.02
873 497 0.06
874 187 0.02
875 170 0.02
876 195 0.02
877 163 0.02
878 298 0.04
879 49 0.01
880 21 0.00
881 38 0.00
882 3 0.00
883 34 0.00
884 4 0.00
885 3 0.00
886 3 0.00
887 3 0.00
888 85 0.01
889 5 0.00
890 234 0.03
891 40 0.01
892 291 0.04
893 331 0.04
894 407 0.05
895 356 0.04
896 137 0.02
897 41 0.01
898 446 0.06
899 10 0.00
900 15 0.00
901 58 0.01
902 10 0.00
903 196 0.02
904 293 0.04
905 12 0.00
906 446 0.06
907 4 0.00
908 183 0.02
909 363 0.05
910 294 0.04
911 155 0.02
912 80 0.01
913 25 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (874 bp):
CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCA
AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGGTGATGGTGCCCCGACGAA
GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGATCAG
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGTCGGGTCCCCCTCTGCGTGCTACCGATC
CTGCTGCCGCAACCCTCAGTCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
ACCGACGAAACGAGCGGGCGGGCGGCGGA
Found at i:22311322 original size:26 final size:26
Alignment explanation
Indices: 22311293--22311343 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
22311283 GGTCTGATCC
22311293 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
22311319 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
22311344 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:22314044 original size:465 final size:468
Alignment explanation
Indices: 22313169--22314096 Score: 1488
Period size: 465 Copynumber: 2.0 Consensus size: 468
22313159 GGTCCCCCTC
* * *
22313169 TGCGTGCTACCAATCCTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGTAATGAACTC
1 TGCGTGCTACCAATCCTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTC
* * * * *
22313234 CGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGAGCGGGCGGGCACTACGTCGGCCAGA
66 CGTATGCCTAAGCCAACCGACGAAAC-AGTGAGCGGACGAGCGGGCAGGCACTACATCAGCCAGA
*
22313299 GAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
130 GAGACGGGATGCACAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
** *
22313364 CTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
195 CTACATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* *
22313429 AGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAATTTTTTACGGTTCGGGA
260 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGA
* * * *
22313494 TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACGTGGTAGACGTGATCCTTGTATTTTT
325 TTTTTTAAAATTTTTTCGAAAAGAGTTATGACCCCAAACGTGGTAGACGTGATCCTTGTATTTTT
*
22313559 GTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
390 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAA
22313624 AAAGTGTCTCACTT
455 AAAGTGTCTCACTT
* * *
22313638 TGCGTGCTATCGATCTTGCTGCCGCAACCCTC-AGTCTGATCTGATCTTAGACTGGGAATGAACT
1 TGCGTGCTACCAATCCTGCTGCCGCAACCCTCGA-TCTGATCTGATCTTAGACTGGGAATGAACT
*
22313702 CTGTATGCCTAAGCCAACCGACG-AA-A-TGAGCGGAC-AGGCGGGCAGGCACTACATCAGCCAG
65 CCGTATGCCTAAGCCAACCGACGAAACAGTGAGCGGACGA-GCGGGCAGGCACTACATCAGCCAG
*
22313763 AGAGATGGGATGCACAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
129 AGAGACGGGATGCACAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
22313828 TCTGCATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCCCGTG
194 TCTACATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * *
22313893 AAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGG
259 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGG
* * *
22313958 ATTTTTTAAAATTTTTTCGAAAAGAGTTATGACGCCAAACTTGGTAGACGTGATCCTTGTGTTTT
324 ATTTTTTAAAATTTTTTCGAAAAGAGTTATGACCCCAAACGTGGTAGACGTGATCCTTGTATTTT
**
22314023 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAA
389 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAA
22314088 AAAAGTGTC
454 AAAAGTGTC
22314097 CCCATTTCAA
Statistics
Matches: 423, Mismatches: 34, Indels: 8
0.91 0.07 0.02
Matches are distributed among these distances:
464 1 0.00
465 340 0.80
466 1 0.00
468 3 0.01
469 78 0.18
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (468 bp):
TGCGTGCTACCAATCCTGCTGCCGCAACCCTCGATCTGATCTGATCTTAGACTGGGAATGAACTC
CGTATGCCTAAGCCAACCGACGAAACAGTGAGCGGACGAGCGGGCAGGCACTACATCAGCCAGAG
AGACGGGATGCACAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TACATGCCAAAGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGAT
TTTTTAAAATTTTTTCGAAAAGAGTTATGACCCCAAACGTGGTAGACGTGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCTCACTT
Found at i:22314436 original size:26 final size:26
Alignment explanation
Indices: 22314399--22314451 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
22314389 CTGGTCCGAT
22314399 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
22314425 CTTAGA-TAGGGAATGAACTTCGTATG
1 CTTAGACT-GGGAATGAACTTCGTATG
22314451 C
1 C
22314452 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:22315329 original size:26 final size:26
Alignment explanation
Indices: 22315289--22315341 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22315279 CCAGTCCAAT
*
22315289 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
22315315 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
22315341 C
1 C
22315342 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:22315512 original size:26 final size:26
Alignment explanation
Indices: 22315472--22315524 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22315462 CTGGTCCAAT
*
22315472 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
22315498 CTTAGACTTGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
22315524 C
1 C
22315525 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:22315576 original size:183 final size:183
Alignment explanation
Indices: 22315268--22315681 Score: 765
Period size: 183 Copynumber: 2.3 Consensus size: 183
22315258 TGTGCTGTCG
* **
22315268 CAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAAC
1 CAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAAC
22315333 TCCGTATGCCTAAGTCAACCACGAAATGAACGTGTGGGCGCTAGCCGGCCAGAGGGGCGGGATAC
66 TCCGTATGCCTAAGTCAACCACGAAATGAACGTGTGGGCGCTAGCCGGCCAGAGGGGCGGGATAC
22315398 GCAAGCCGGGGATCAGTCGGGTCTCCTTCTGCATGCTGCCGATCCTACTACCA
131 GCAAGCCGGGGATCAGTCGGGTCTCCTTCTGCATGCTGCCGATCCTACTACCA
*
22315451 CAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGCAATGAAC
1 CAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAAC
*
22315516 TCCGTATGCCTAAGTCAACCACGAAATGAGCGTGTGGGCGCTAGCCGGCCAGAGGGGCGGGATAC
66 TCCGTATGCCTAAGTCAACCACGAAATGAACGTGTGGGCGCTAGCCGGCCAGAGGGGCGGGATAC
22315581 GCAAGCCGGGGATCAGTCGGGTCTCCTTCTGCATGCTGCCGATCCTACTACCA
131 GCAAGCCGGGGATCAGTCGGGTCTCCTTCTGCATGCTGCCGATCCTACTACCA
* *
22315634 CAACCCTTGGTCTGGTCCAATCTTAGACTTGCAATGAACTCCGTATGC
1 CAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGC
22315682 CTAAGCCAAC
Statistics
Matches: 224, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
183 224 1.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.22
Consensus pattern (183 bp):
CAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAAC
TCCGTATGCCTAAGTCAACCACGAAATGAACGTGTGGGCGCTAGCCGGCCAGAGGGGCGGGATAC
GCAAGCCGGGGATCAGTCGGGTCTCCTTCTGCATGCTGCCGATCCTACTACCA
Found at i:22316657 original size:159 final size:159
Alignment explanation
Indices: 22316363--22316726 Score: 491
Period size: 159 Copynumber: 2.3 Consensus size: 159
22316353 TCAACCCGAT
* ** *
22316363 CCGATCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCGACCCCTGAAACGAGCGTTTGGGTG
1 CCGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCCCTGAAACGAGCGTGCGGGCG
* *
22316427 CTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCCTCTCCGTGCTAC
65 CTCAACCGGCCAGAAGGGCGGGATGCGCAAGCCCGGGATCGACCGAGTCCCCCTCTCCGTGCTAC
* * *
22316492 CTATCCTGCTGCCGCAACCCTCGGTCT-AGC
130 CGATCCTGCTACCGCAACCCTCAGTCTGA-C
*
22316522 CCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCAC-GAAATGAGCGTGCGGGCG
1 CCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC-CTGAAACGAGCGTGCGGGCG
* * * * * *
22316586 CTCAGCCGGCCAGAAGGGCGGGATGCGCAAGCCCGGGATCGACTGGGTCCTCCTCTGCGTGCTAT
65 CTCAACCGGCCAGAAGGGCGGGATGCGCAAGCCCGGGATCGACCGAGTCCCCCTCTCCGTGCTAC
*
22316651 CGATCCTGCTACCGCAACCCTCAGTCTGAT
130 CGATCCTGCTACCGCAACCCTCAGTCTGAC
** * *
22316681 CTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCCT
1 CCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCCT
22316727 CTAGCCGGCT
Statistics
Matches: 180, Mismatches: 21, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
158 1 0.01
159 175 0.97
160 4 0.02
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (159 bp):
CCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCCTGAAACGAGCGTGCGGGCGC
TCAACCGGCCAGAAGGGCGGGATGCGCAAGCCCGGGATCGACCGAGTCCCCCTCTCCGTGCTACC
GATCCTGCTACCGCAACCCTCAGTCTGAC
Found at i:22316802 original size:25 final size:25
Alignment explanation
Indices: 22316768--22316842 Score: 141
Period size: 25 Copynumber: 3.0 Consensus size: 25
22316758 GTGGGTTGAC
22316768 TTAGGCATACGGAGTTCATTCCCAA
1 TTAGGCATACGGAGTTCATTCCCAA
22316793 TTAGGCATACGGAGTTCATTCCCAA
1 TTAGGCATACGGAGTTCATTCCCAA
22316818 TCTAGGCATACGGAGTTCATTCCCA
1 T-TAGGCATACGGAGTTCATTCCCA
22316843 GTCTAAGATC
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
25 26 0.53
26 23 0.47
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (25 bp):
TTAGGCATACGGAGTTCATTCCCAA
Found at i:22316830 original size:26 final size:26
Alignment explanation
Indices: 22316769--22316847 Score: 142
Period size: 26 Copynumber: 3.1 Consensus size: 26
22316759 TGGGTTGACT
22316769 TAGGCATACGGAGTTCATTCCCAAT-
1 TAGGCATACGGAGTTCATTCCCAATC
22316794 TAGGCATACGGAGTTCATTCCCAATC
1 TAGGCATACGGAGTTCATTCCCAATC
*
22316820 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAATC
22316846 TA
1 TA
22316848 AGATCGGACT
Statistics
Matches: 52, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 25 0.48
26 27 0.52
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAATC
Found at i:22318601 original size:26 final size:26
Alignment explanation
Indices: 22318565--22318617 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
22318555 GTTAACTTAG
22318565 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22318591 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22318617 G
1 G
22318618 ATCAGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22319499 original size:26 final size:26
Alignment explanation
Indices: 22319463--22319515 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22319453 GTTGACTTAG
22319463 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
22319489 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22319515 G
1 G
22319516 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22320387 original size:26 final size:26
Alignment explanation
Indices: 22320357--22320409 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22320347 GTTGACTTAG
**
22320357 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22320383 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22320409 G
1 G
22320410 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22321296 original size:25 final size:26
Alignment explanation
Indices: 22321260--22321311 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
22321250 GTTGACTTAG
22321260 GCATACAGAGTTCATTCCCAG-CTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22321285 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
22321311 G
1 G
22321312 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 1 0.04
25 19 0.76
26 5 0.20
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22321639 original size:902 final size:899
Alignment explanation
Indices: 22316793--22327107 Score: 13364
Period size: 902 Copynumber: 11.6 Consensus size: 899
22316783 TCATTCCCAA
* * *
22316793 TTAGGCATACGGAGTTCATTCCCAATCTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACT
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
** ** * *
22316858 GGATTGAGGGTTACGGCAGCACATGCTGGGCTCAAGCATGTGTTGGTGCCGTATTTTTCTTCGTC
66 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * *
22316923 GGGGCACCATTGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGA-GATCGG
131 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATCGG
* * *
22316987 GGGGCTGGGGGGTGTGCGCACATGATGTGCAATGGGTGTTGGTACTTGGCCCTTATATTGGCCCC
195 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
22317052 CTATCCCTCATCAAACTTCGAAAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
260 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
22317117 CTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTA
325 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * ** *
22317182 CACTTCGATTTTTTAGCTGGATTTTTTTGTGCACACCAA-AATAAATACAAGGATCATGTCTACC
390 CACTTCGAGTTTTTAGCT-GAATTTTTTGTGCATGCCAACAA-AAATACAAGGATCACGTCTACC
*** * * * *
22317246 AAGTTTGGGATGAAGACTCCTTTCAAAAAAATTTTAAAAAATCCCGAATCGCAAAAAGTTTCAAA
453 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* * *
22317311 GATCAAGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACCAT
518 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
22317376 TGTAGGAATTTACAAGCCATAAAAATGGTATTGGCACGTAAAAATATGAAGATGTGCCTAAACCC
583 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
*
22317441 ACCTACCACCC-ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
648 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CTGCCCG
* * * * * * *
22317505 CCCACTCGCCCGCTCGTTTCATCGATTGGCTTAGGCATATGGAGTTCATTCCCAGTTTAAGATCG
712 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * ** * * ** *
22317570 GATCAGACCAAGGGTTACGGCAATAGGATCGGCAACACGCAGAGGGGGACCCGGTTGATCCCCGA
777 GACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC-GACGATCCCCGG
* ** * * * *
22317635 CTTGCGCATCCCGCCCCTCTAGCCGATTGACCGCCCGTATGCTCGTTTCATGGGTTGAC
841 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
22317694 TTAGGCATACGGAG----TT--CA---T-----T-C------C--T---AGTCTAAGATCGGACC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** * * * *
22317733 GGACCTAGGGTTGTGACAGCACACGGTGGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTC
66 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * **
22317798 GGGGCACCAT---C---G--T---CGGAGAACCTAACCGACGGCTTTGGGGTTTCGGTGATCGGG
131 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GG
* *
22317852 GGGGCCGTGGGGGGTGTGTGCACATGATGTGCGATGGGTACTGGTACTTGGCCCTTATATTGGCC
195 GGGGCC--GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
** * * * *
22317917 CCCTATCAGTCATCAAACCTCTAGAAGTCACACCCCATTAAAAAGCATTTGAGATTTTACAGGTT
258 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
22317982 TGCCGCCAGTAGCCATTAATGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
323 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
22318047 TACACTTTGAGTTTTTGGCTGAGTTTTTTGTGCATGCCAAGAAAAATACAAGGATCACGTCTACC
388 TACACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * * *
22318112 AAGTTTGGGGCAAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAA
453 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
* *
22318177 AATCATGAAAAATAGAAAACGAGTCGTCTCGCCATGAAACTTCACGTCAAGGCTTAAGGGACCAT
518 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
* * * * *
22318242 TGTATGAATTTACAAGCCATGAAAATGGCATTGGCACGTAGAGATATGACGATGTGCCTAAACCC
583 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * * *
22318307 ACCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCTCTCTGGCTGGCATAGTGCCCGCCCG
648 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CTGCCCG
* * **
22318372 CCCGCCTGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTG
712 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * * * *
22318437 GACCAGACCAAGGGTTGCAGTAGCAGGATCGACAGCACGCAGAGGGGGACCCAATCGATCACCGG
777 GACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CGATCCCCGG
* * * * *
22318502 TTTACGCATCTCGCCCCTCTGGCCGTCTGAGCGCCCGCACGCTCGTTTCGTGGGTTAAC
841 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
*
22318561 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * * *
22318626 AGTCCAAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCCGTATTTTTCTTCCA
66 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCGCATTTTTCTT-CG
* * * *
22318691 T-GGGGCACCATCGCTGGAGCATCGCCGGAGAACCTAACCGACGACATTGGGGTTTCGACGATCG
129 TCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* * *
22318755 GGGGGGCAGGGGGTGTGCGCACATGATGTGCGATGGGGGCT-GTACTTGGCCCTTATATTGGCCC
194 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
22318819 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTT
259 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
22318884 GCTGCCAGTAGCAATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
324 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
22318949 ACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCACATCTACC
389 ACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
22319014 AAGTTTGGGGCCAAAAGTCCTTCCGAAAAGATTTGAAAAAATCCCGAACCGCAAAAAGTTTTAAA
453 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
** * * *
22319079 AATTGTGAAAAATAGAAAACGAGTCATCTTCCCATGAAACTTCAGGTGAAGGCTTAAGGGACCAT
518 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
22319144 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
583 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCC
* * * *
22319209 ACCTACCATCCTATCGATGCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGT-G-G-TGCCCAC
648 ACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTGCCCGC
* * **
22319271 CCGCCCGCCCGCTCGTTTCGTCCGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATTGG
713 CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* ** * * *
22319336 ACTGGACCGAGGGTTGCGATAGTAGGATCGACAACACGTAGAGGGGGACCCGACCGATCCCCGGC
778 ACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CGATCCCCGGC
* * *
22319401 TTGCACATCCCGCCCCTCTGGCCGGCTGAGCACACGCACGCTCGTTTCGTGGGTTGAC
842 TTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
22319459 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTTTAAGATCAGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * *
22319524 GGACCGAGGTTTGCGGCAGCACATGCTGGGCTCGAGCATATGCTGGTGTCGCATTTTTCTTTC-C
66 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTC-TTCGT
* *** * * * * * *
22319588 CGGGGTACCATCGGTTGAGCATCACCAGAGAACCTGACCGGCAGCATTGGGGTTCCTGATGATCA
130 CGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATCG
* * *
22319653 GGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGGCC
194 GGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * *
22319718 CCTATTCCTCATCAAACCTCGAGAACTCACACTCCTTTAAAGAGCATTTGAGATCTTACAGGTTT
259 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* *
22319783 GTTGCCAGTAGCCATTAAAGTGTCTGAAAT-AGGACACTTTTTTCAAATGGTCACAAAATCTTGT
324 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
22319847 ACATTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAATGATCACGTCTACC
389 ACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* * * *
22319912 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAGCCGTAAAAAGATTT-GA
453 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAG-TTTCAA
*
22319976 GAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
517 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
*** *
22320041 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAACATGTGCCTAAACC
582 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* *
22320106 CACCTACCACCCTATCGATCCACGGATTGCGCATCCCGTCTCTCAGGCCGGCGT-G-G-T----G
647 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTGCCCG
** * * *
22320164 CATGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGAAGTTGATTCCCAATCTAAGATCA
712 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
** * * * * * *
22320229 GACCAAATCGAGGGTTGCGATC-GCAGGATCGGCAACATGCAGAGGGGGACCCGGCCGATCCCCG
777 GACCGGACCGAGGGTTGCG-GCAGCAGGATCGACAGCACGCAGAGGGGGACCC-GACGATCCCCG
* * *
22320293 GCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCATGCTCGTTTCATGGGTTGAC
840 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
** *
22320353 TTAGGCATACGGAGTTCATTCCTTGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** * * *
22320418 GGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCAGGTGCTGGTACCGTATTTTTCTTCGTC
66 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
** * * * * * ** * *
22320483 GGGTTACCATCGTCGGACCATTGCCGGAGAACTTGACTGGTGGCATTGGGGTTTCAACGATCGGG
131 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC-GG
* * *
22320548 GGGGCTGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGTCCC
195 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
22320613 CTATCCCTCATCAAACCTCAAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
260 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
22320678 CTGCCAGTAGCCATGAAAGTGT-TCGACATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
325 CTGCCAGTAGCCATTAAAGTGTCT-GAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* * *
22320742 ACACTTCGAGTTTTTAGCTGAATTTTTT-TTCACTCCCCAACAAAAATACAAGGATCACATCTAC
389 ACACTTCGAGTTTTTAGCTGAATTTTTTGTGCA-T-GCCAACAAAAATACAAGGATCACGTCTAC
* *
22320806 CAATTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
452 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
* * *
22320871 AAATCATGAAAAATAGAAAATGAGCCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCA
517 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
22320936 TTGTCTGAATTTACAACCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACC
582 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * *
22321001 CACCTACCACCCTATCGATCCACGGGTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCTGCCT
647 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CTGCCC
* *
22321066 GCCCGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATC
711 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * * * * *
22321131 CGATCAGATCGAGGGTTCCGGCAGGAGGATTGGCAGCATGCAGAGGGGGACCCGACCAACCCTCG
776 AGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACGATCCC-CG
* * *
22321196 GCTTGAGCATCCCGGCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
840 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
22321256 TTAGGCATACAGAGTTCATTCCCAG-CTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * ** *
22321320 GGACCGAGGGTTACGGCAGCACATGCTAGGCTCGGGCATATGCTGGTGCTACATTTTTCTTC-CC
66 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * *
22321384 CGGGCAACCATCGCCGGAGCATCACCAGAGAACCTAACCGACGGCATTGGGGTTCCGACGATCGG
131 GGGGC-ACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGG
* * *
22321449 GGGGCCGGGGGGGTGTGCGCACATGATGTGCAATGCGTGCTGGCACTTGGCCCTTATATTGGCCC
195 GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * * * *
22321514 CCTATCCCTCATCAAACCTCAAGAACTCAGACCCCCTGAAAGAGCATTTGGGATTTTACACGTTT
259 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
*
22321579 GCTGCCAGTAGCCATTAAAGT-TACTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTG
324 GCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * *
22321643 TACACTTTGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAAAAAAAATACAAGGATCACATCTAC
388 TACACTTCGAGTTTTTAGCTGAATT-TTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * **
22321708 CAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCGAAAAAAGTTTTGA
452 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
*
22321773 AAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
517 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* *
22321838 TTGTATGAATTTACAAGCCATAACAAA-GGCATTGGCATGTAGAAATATGAAGTTGTGCCTAAAC
582 TTGTATGAATTTACAAGCCATAA-AAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
**
22321902 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTAGCGTA---CTGCCC
646 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTGCCC
* * * * ** * *
22321964 ACCCGCCCGTCTGCTCATTTCGTCCATTGGCTTGGGCATACGGAGTTCATTCCTAGTCTAAGATC
711 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * * * *
22322029 GGACCGGACCGAGGGTTGTGGCAGCAGGATTGACTGCACGCAAAGAGGGACTCGGTCGATCCCCG
776 AGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC-CCGACGATCCCCG
* ** * * * *
22322094 GCTTGCGCATCCCGTCCCTCTGGCTTGCTGAGCACCCACACGCTAGTTTTGTGGGTTGAC
840 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * *
22322154 TTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGAAGTTCATTCCCAGTCTAAGATCGAACC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
22322219 GGACTGAGGGTTTCGGCAGCACATACTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTC
66 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * *
22322284 GGGGCACCATCGTCAGAGCATCGCCGGAGCATCACCGGAAAACCTGACCGGCGGCATTGGGGTTC
131 GGGG---CA----C----CATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
** * * * ** *
22322349 CGGTGATCCGGGGCCCAGGGGGCATGCGCACATGATGTGCGATGGGTGCTGGCACTTGGCCCTTA
185 CGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * *
22322414 TATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCAGACCCCCTGAAAGAGCATTTGGGATTT
250 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
22322478 TACACGTTTGCTGACAGTAGCCATTAAAGT-TACTGAAATGGGGACACTTTTTTCAAATGGTCAC
315 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACACTTTTTTCAAATGGTCAC
** *
22322542 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCATGGTAAAAAAAATACAAGGAT
379 AAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
22322607 CACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACTG-AAA
443 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
** * *
22322671 AACGTTTTGAAAATCCTGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCT
508 AA-GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
22322736 TAAGGGACAACTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
572 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * * * *
22322801 TTCCTAAACCAACCCACCACCCTATCGATCCACGGCTTGCCCATCCCGTCTCTCTGGCCGGAGTA
637 TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTA
* *
22322866 GTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTGATTCCCA
702 GTG-CTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* ** * *
22322931 GTCTAGGATCAGAATGGACCGAGGGTTG-GGACAGTAGGATCGACAGCACGCAGAGGAGGACCCG
766 GTCTAAGATCAGACCGGACCGAGGGTTGCGG-CAGCAGGATCGACAGCACGCAGAGGGGGACCCG
* * * * *
22322995 ATGATCCCCAGCTTGCGCATCCTGCCCCTCTGGCCGGTTGACCGCCCGCACGCTCGTTTCGTGGG
830 ACGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGG
*
22323060 CTGAC
895 TTGAC
* * * *
22323065 TTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCTTTCCCAATCTAAGATCGGACC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * *
22323130 AGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCTTGTGCTAGTGCCACATTTTTCTTCATC
66 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * *
22323195 GAGGCACCATCACTGGAGCATCGCCGGAGAACCTGACCGGA-GGCATTGGGGTTCCGGCGATCGG
131 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGACGATCGG
* *
22323259 GGGTGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGCACTTATATTGGCC
195 GGG-GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
22323324 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTT
258 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * *
22323389 TGCTACCAATTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
323 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
*
22323454 TACACTTCGAGTTTTTAGCTGAATCTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
388 TACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * **
22323519 CAAGTCTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACTG-AAAAAGTTTTGA
452 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
* * *
22323583 AAATCACGAAAAATAGAAAACGAGTCGTGTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACAA
517 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * *
22323648 CTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAGTATGAAGATGTGCCTAAAGC
582 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
22323713 AACCCACCACCCTATCGATCCACGGCTTGCCCATCCCGTCTCTCTGGCCGGAGTA--G-T----G
647 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTGCCCG
* * *
22323771 CCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTGATTCCCAGTCTAGGATCA
712 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCA
* * * *
22323836 GACTGGACCGAGGGTTG-GGACAGTAGGATCGACAGCACGCAGAGGGGGACCCGATGATCCCCAG
777 GACCGGACCGAGGGTTGCGG-CAGCAGGATCGACAGCACGCAGAGGGGGACCCGACGATCCCCGG
* * * ** *
22323900 CTTGCGCATCCTGCCCCTCTGGCCGGTTGACCGCCCGCACGCTCGTTTTATGGGCTGAC
841 CTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
22323959 TTAGGCATACGAAGTTCATTCCTAGTCTAAGCATACGGAGTTCTTTCCCAATCTAAGATCGGACC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * *
22324024 AGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCTTGTGCTAGTGCCACATTTTTCTTCATC
66 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * **
22324089 GAGGCACCATCACTAGAGCATCGCCGGAGAACCTGACCGGA-GGCATTGGGGTTCCGACGATCGG
131 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACC-GACGGCATTGGGGTTCCGACGATCGG
* * **
22324153 GGGTACCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGATACTTGGTGCTTATATTGGCCC
195 GGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
22324218 CCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTTT
259 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
22324283 GCTACCAATTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
324 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
22324348 ACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACC
389 ACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
* *
22324413 AAGTATGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCG-AAAAAGTTTCAAA
453 AAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAA
** * * * * *
22324477 AATTGTAAAAAACAAAAAACGAGTCGTCTCGCCATGAAACTACACGTGAAGGCTTAAGGGACCAT
518 AATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
22324542 TGTATGAATTTACAAGCCATAAAAATGGCATTGG--TGCATAGAAATATGAAGATGTGCCTAAAC
583 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC--AGAAATATGAAGATGTGCCTAAAC
* * **
22324605 CCACCTACCACCCTATCGATCCATGGCTTGCGCACCCCGTCTCTCTGGCTAGCGTA---CTGCCC
646 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTGCCC
* * *
22324667 GCCCACCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAACATC
711 GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * *
22324732 AGACCGGACTGAGGGTTACGAG-AGCAGGATC-AGTAGCATGCAGAGGGGGACCCGACCGATCCT
776 AGACCGGACCGAGGGTTGCG-GCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGA-CGATCCC
* * * * *
22324795 CGGCTTGCGTATCCCGCCCTTTTGGCCGGCTGGGCGCCCGCACGCTCGTTTCATGGGTTGAC
838 CGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
22324857 TTAGGCATACGGAGTTCATTCCCAGT-T-----TA---AG---------A---T----T-GGACC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * **
22324896 GGACCGAGGGTTATGGCAGTAGATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCACC
66 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * *
22324961 AGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACTGGA-GGCATTGGGGTTTCGACGATCGG
131 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGAC-CGACGGCATTGGGGTTCCGACGATC-G
*
22325025 GGGGGCCGGGGGGGTGTGCGCACATGATGTCCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
194 GGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
22325090 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTACAGGTT
258 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* * * ** *
22325155 TGCTACCAATTGCCATTAAAGTGTCTGAAATGGGGACAAATTTTGCAAATGGTCACAAAATCTTG
323 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
22325220 TACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAGCAAAAATACAAGGATCA-GATCTA
388 TACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACG-TCTA
* * ** *
22325284 CCAAGTTTTGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCATGAACCGCAAAAAGTTTTA
451 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
*
22325349 AAAATCATGAAAAATAGAAAACGAGTCGTCTAGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
516 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
*
22325414 ATTGTATGAATTTACAAGCCATAAAAAAGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
581 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* *
22325479 CCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
646 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CTGCC
* * * *
22325544 TGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGGT
710 CGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* * ** * ** *
22325609 CAGACCGGACTG-GGGTTGCGGTAGCAGGATCGGTAGCACACAGATAGGGACCCGATCGATCCCA
775 CAGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CGATCCCC
* * * * *
22325673 GGCTTACGCATCCTGCCCCTCTGGCCGGATGAG-GACCCGTACGCTCGTTTCGTGGGTTAAC
839 GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG-CCCGCACGCTCGTTTCGTGGGTTGAC
* * * * * * *
22325734 TTAGGCATA-TGAGTTCATTCCTAGTATAAGCATACAGAGTTCATTCCCAGTGTAAAATCGGATC
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
22325798 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATATACTGGTGCCGCATTTCTCTTCGTC
66 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * *
22325863 GGGGCACCATCGCTGGAGCATCGTCGGAGAACCCGACCGACGGCATTGGGGTTCCGACGATCGGG
131 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
*
22325928 GGTGCCAAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
196 GG-GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
*
22325993 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
259 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
22326058 GTTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGG
324 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
22326123 ACCACTTCGAGTTTTTAGCTGAATTTTTT-TG--TGCACAAAAAAAATACAAGGATCACGTCTA-
389 A-CACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGC-CAACAAAAATACAAGGATCACGTCTAC
* * * **
22326184 C-AGTTTGGGGCCAAAACTCCATCTGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTCAA
452 CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
* *
22326248 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCGCATGAAGGCTTAAGGGACCA
517 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
** *
22326313 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACATAAATATGAAGATGTGCCTAAACC
582 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACC
* * * *
22326378 CACCTACCACCCTATCGATCCACGGCTTACGCATCTCGTCTCT-TGGTCGGCGTA--G-TACCCG
647 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTGCCCG
** * *
22326439 CCCGCTTGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTTC-TTCCCAGTCTAAGATC
712 CCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG-TTCATTCCCAGTCTAAGATC
* ** * * * * * * *
22326503 GGACCGGACTAAGGGTTACGGCAACAGGATCGACAGCACGTAAAGGGTGACCCAGCCAATCCCCG
776 AGACCGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC-GACGATCCCCG
** * *
22326568 GCTTGCGCATCCCGCCCCTCCAGCCGGCTGAGCACTCGCACGCTCGTTTCGTGGGTTGAC
840 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
22326628 TTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C---C-----T------
1 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * *
22326668 -GACCGAGGGTTACGGCAGCACCTACTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCGTC
66 GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
** * * *
22326732 GGGGCACCATCGTTGGAGCATCGTCGGAGAACCCGACCGACGGCATTGGGGTTCCGACGATTGGG
131 GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGA-TCGG
*
22326797 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCC
195 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* *
22326862 CTATCCCTCATCAAACCTTGAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
260 CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* *
22326927 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTAAAAAAATCTTGTA
325 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * * *
22326992 CACTTCGATTTTTTAGCTGAATTTTTTTTTACGTGCCAAC-AAAATACAAGGATCACGTCTACCA
390 CACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* *
22327056 AGTTTGGGGCCAAAACTTCTTCCGAATAAATTTTAAAAAATCCCGAACCGCA
454 AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCA
22327108 TGTAGACACC
Statistics
Matches: 8376, Mismatches: 864, Indels: 378
0.87 0.09 0.04
Matches are distributed among these distances:
863 1 0.00
864 32 0.00
865 7 0.00
866 224 0.03
867 431 0.05
868 186 0.02
869 143 0.02
870 10 0.00
871 50 0.01
872 118 0.01
873 295 0.04
874 179 0.02
875 79 0.01
876 21 0.00
877 100 0.01
878 75 0.01
880 2 0.00
881 1 0.00
882 3 0.00
884 1 0.00
885 2 0.00
886 1 0.00
887 1 0.00
888 2 0.00
889 2 0.00
890 1 0.00
891 4 0.00
892 4 0.00
893 600 0.07
894 972 0.12
895 331 0.04
896 2 0.00
897 172 0.02
898 1114 0.13
899 216 0.03
900 80 0.01
901 205 0.02
902 1412 0.17
903 448 0.05
904 12 0.00
905 34 0.00
906 1 0.00
907 8 0.00
908 412 0.05
909 51 0.01
910 55 0.01
911 177 0.02
912 99 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
GGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
GGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
GGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
ACTTCGAGTTTTTAGCTGAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
TTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACC
TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCTGCCCGCCCG
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
GGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACGATCCCCGGCTTGC
GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
Found at i:22322187 original size:26 final size:26
Alignment explanation
Indices: 22322158--22322210 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22322148 GTTGACTTAG
*
22322158 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
22322184 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
22322210 G
1 G
22322211 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:22323106 original size:26 final size:26
Alignment explanation
Indices: 22323069--22323121 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22323059 GCTGACTTAG
* *
22323069 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
22323095 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
22323121 G
1 G
22323122 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:22324000 original size:26 final size:26
Alignment explanation
Indices: 22323963--22324015 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
22323953 GCTGACTTAG
* *
22323963 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
22323989 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
22324015 G
1 G
22324016 ATCGGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:22327242 original size:27 final size:27
Alignment explanation
Indices: 22327212--22327286 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
22327202 TTTTCTTTTG
*
22327212 TATTTTATGTAT-TTTATTATTTATTAT
1 TATTATATGTATATTT-TTATTTATTAT
22327239 TATTATATGTATATTTTTATTTATT-T
1 TATTATATGTATATTTTTATTTATTAT
22327265 T-TT-T-TGTAATATTTTT-TTTATT
1 TATTATATGT-ATATTTTTATTTATT
22327287 TATCTTATTG
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
23 9 0.20
24 9 0.20
25 2 0.04
26 2 0.04
27 20 0.44
28 3 0.07
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (27 bp):
TATTATATGTATATTTTTATTTATTAT
Found at i:22327262 original size:24 final size:24
Alignment explanation
Indices: 22327226--22327287 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 24
22327216 TTATGTATTT
22327226 TATTATTTA-TTATTATTATATGT-A
1 TATT-TTTATTTATT-TTATATGTAA
* *
22327250 TATTTTTATTTATTTTTTTTGTAA
1 TATTTTTATTTATTTTATATGTAA
22327274 TATTTTT-TTTATTT
1 TATTTTTATTTATTT
22327288 ATCTTATTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 17 0.50
24 17 0.50
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (24 bp):
TATTTTTATTTATTTTATATGTAA
Found at i:22327893 original size:20 final size:20
Alignment explanation
Indices: 22327860--22327897 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22327850 TCCGGTGAAC
*
22327860 TTCCGGTGAAAAAACCCAGA
1 TTCCGATGAAAAAACCCAGA
*
22327880 TTCCGATGACAAAACCCA
1 TTCCGATGAAAAAACCCA
22327898 AAATCCGGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.29, G:0.16, T:0.16
Consensus pattern (20 bp):
TTCCGATGAAAAAACCCAGA
Found at i:22328255 original size:18 final size:18
Alignment explanation
Indices: 22328224--22328392 Score: 58
Period size: 18 Copynumber: 8.9 Consensus size: 18
22328214 CTCCATGTTT
*
22328224 TTTTTTCTTTTTTTTTTAA
1 TTTTTT-TTATTTTTTTAA
**
22328243 TTTTTTTTATTTTCATTTCT
1 TTTTTTTTATTTT--TTTAA
* *
22328263 TTGTTTATTTGTTTTTTTTA
1 TT-TTT-TTTATTTTTTTAA
*
22328283 TTTTTTTTATTTATTT-A
1 TTTTTTTTATTTTTTTAA
*** *
22328300 -TTAGATTAGGTTTATTTAA
1 TTTTTTTTA--TTTTTTTAA
*
22328319 TATTCTTTTTATCTTTATTTTA
1 T-TT-TTTTTAT-TTT-TTTAA
** *
22328341 TTTTCATT-TTTGTTTAA
1 TTTTTTTTATTTTTTTAA
*
22328358 CTTTTCTTTATTTTTTT-A
1 -TTTTTTTTATTTTTTTAA
22328376 TTTTTATTTATTTTTTT
1 TTTTT-TTTATTTTTTT
22328393 TATTATTCTA
Statistics
Matches: 112, Mismatches: 23, Indels: 31
0.67 0.14 0.19
Matches are distributed among these distances:
16 5 0.04
17 9 0.08
18 43 0.38
19 17 0.15
20 14 0.12
21 9 0.08
22 15 0.13
ACGTcount: A:0.15, C:0.05, G:0.04, T:0.76
Consensus pattern (18 bp):
TTTTTTTTATTTTTTTAA
Found at i:22328262 original size:31 final size:31
Alignment explanation
Indices: 22328227--22328286 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
22328217 CATGTTTTTT
*
22328227 TTTCTTT-TTTTTTTAATTTTTTTTATTTTCA
1 TTTCTTTGTTTATTT-ATTTTTTTTATTTTCA
*
22328258 TTTCTTTGTTTATTTGTTTTTTTTATTTT
1 TTTCTTTGTTTATTTATTTTTTTTATTTT
22328287 TTTTATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 20 0.77
32 6 0.23
ACGTcount: A:0.10, C:0.05, G:0.03, T:0.82
Consensus pattern (31 bp):
TTTCTTTGTTTATTTATTTTTTTTATTTTCA
Found at i:22328356 original size:27 final size:26
Alignment explanation
Indices: 22328326--22328406 Score: 74
Period size: 27 Copynumber: 2.9 Consensus size: 26
22328316 TAATATTCTT
*
22328326 TTTATCTTTATTTTATTTTCATTTTTG
1 TTTATCTTT-TTTTATTTTCATTTTTA
* *
22328353 TTTAACTTTTCTTTATTTTTTTATTTTTA
1 TTTATCTTTT-TTTA--TTTTCATTTTTA
22328382 TTTAT-TTTTTTTATTATTCTATTTT
1 TTTATCTTTTTTTATT-TTC-ATTTT
22328407 CTTTAAATAA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
25 2 0.05
26 3 0.07
27 21 0.48
28 4 0.09
29 14 0.32
ACGTcount: A:0.16, C:0.06, G:0.01, T:0.77
Consensus pattern (26 bp):
TTTATCTTTTTTTATTTTCATTTTTA
Found at i:22328393 original size:22 final size:22
Alignment explanation
Indices: 22328231--22328399 Score: 69
Period size: 22 Copynumber: 7.6 Consensus size: 22
22328221 TTTTTTTTTC
22328231 TTTTTTTTTTAATTTTT-TTTAT
1 TTTTTTTTTT-ATTTTTATTTAT
* * * *
22328253 TTTCATTTCTT-TGTTTATTTGT
1 TTT-TTTTTTTATTTTTATTTAT
22328275 TTTTTTTATTT-TTTTTATTTAT
1 TTTTTTT-TTTATTTTTATTTAT
* *** ** *
22328297 TTATTAGATTAGGTTTATTTAA
1 TTTTTTTTTTATTTTTATTTAT
* * *
22328319 TATTCTTTTTATCTTTATTTTAT
1 TTTTTTTTTTATTTTTA-TTTAT
** * *
22328342 TTTCATTTTT-GTTTAACTTT-T
1 TTTTTTTTTTATTTTTA-TTTAT
22328363 CTTTATTTTTTTATTTTTATTTAT
1 -TTT-TTTTTTTATTTTTATTTAT
*
22328387 TTTTTTTATTATT
1 TTTTTTTTTTATT
22328400 CTATTTTCTT
Statistics
Matches: 102, Mismatches: 36, Indels: 18
0.65 0.23 0.12
Matches are distributed among these distances:
21 10 0.10
22 60 0.59
23 27 0.26
24 5 0.05
ACGTcount: A:0.17, C:0.04, G:0.04, T:0.76
Consensus pattern (22 bp):
TTTTTTTTTTATTTTTATTTAT
Found at i:22328411 original size:17 final size:16
Alignment explanation
Indices: 22328365--22328411 Score: 53
Period size: 17 Copynumber: 3.0 Consensus size: 16
22328355 TAACTTTTCT
*
22328365 TTATTT-TTTTATTT-
1 TTATTTATTTTCTTTA
*
22328379 TTATTTATTTTTTTTA
1 TTATTTATTTTCTTTA
22328395 TTATTCTATTTTCTTTA
1 TTATT-TATTTTCTTTA
22328412 AATAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 6 0.21
15 7 0.25
16 5 0.18
17 10 0.36
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (16 bp):
TTATTTATTTTCTTTA
Found at i:22334467 original size:26 final size:26
Alignment explanation
Indices: 22334438--22334508 Score: 80
Period size: 21 Copynumber: 2.9 Consensus size: 26
22334428 ATCAACAATG
22334438 GATGAAAAATGAGAAAAGAAAAAAAA
1 GATGAAAAATGAGAAAAGAAAAAAAA
22334464 GATG----ATGA-AAAAGAAAAAAAA
1 GATGAAAAATGAGAAAAGAAAAAAAA
**
22334485 GAAAAAAAATGAGAAAATGAAAAA
1 GATGAAAAATGAGAAAA-GAAAAA
22334509 GGAGATTCAA
Statistics
Matches: 37, Mismatches: 2, Indels: 11
0.74 0.04 0.22
Matches are distributed among these distances:
21 15 0.41
22 4 0.11
25 4 0.11
26 8 0.22
27 6 0.16
ACGTcount: A:0.73, C:0.00, G:0.18, T:0.08
Consensus pattern (26 bp):
GATGAAAAATGAGAAAAGAAAAAAAA
Found at i:22334490 original size:10 final size:9
Alignment explanation
Indices: 22334451--22334493 Score: 50
Period size: 9 Copynumber: 4.4 Consensus size: 9
22334441 GAAAAATGAG
22334451 AAAAGAAAA
1 AAAAGAAAA
*
22334460 AAAAGATGATGA
1 AAAAGA--A-AA
22334472 AAAAGAAAA
1 AAAAGAAAA
22334481 AAAAGAAAA
1 AAAAGAAAA
22334490 AAAA
1 AAAA
22334494 TGAGAAAATG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
9 20 0.69
10 1 0.03
11 1 0.03
12 7 0.24
ACGTcount: A:0.81, C:0.00, G:0.14, T:0.05
Consensus pattern (9 bp):
AAAAGAAAA
Found at i:22335820 original size:41 final size:42
Alignment explanation
Indices: 22335708--22335881 Score: 289
Period size: 42 Copynumber: 4.1 Consensus size: 42
22335698 TTGGACATGA
22335708 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
22335750 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
22335792 AGGAGCAATTTA-TTTTCAAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* *
22335833 AGGAGCAATTTA-TGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTACT-TTTC-CAAAGTCGTGGTGCCTCTGTTTAG
22335876 AGGAGC
1 AGGAGC
22335882 TTTGGTAAAA
Statistics
Matches: 126, Mismatches: 4, Indels: 3
0.95 0.03 0.02
Matches are distributed among these distances:
41 41 0.33
42 58 0.46
43 27 0.21
ACGTcount: A:0.23, C:0.17, G:0.25, T:0.35
Consensus pattern (42 bp):
AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:22335894 original size:1 final size:1
Alignment explanation
Indices: 22335888--22335941 Score: 72
Period size: 1 Copynumber: 54.0 Consensus size: 1
22335878 GAGCTTTGGT
* * * *
22335888 AAAAAAAAAAAAAAAAAACAAAAACAAAAAACAAAAAAAAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
22335942 TGACAATGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:22335923 original size:23 final size:23
Alignment explanation
Indices: 22335889--22335941 Score: 88
Period size: 24 Copynumber: 2.3 Consensus size: 23
22335879 AGCTTTGGTA
22335889 AAAAAAAAAAAAAAAAACAAAAAC
1 AAAAAAAAAAAAAAAAA-AAAAAC
*
22335913 AAAAAACAAAAAAAAAAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAC
22335936 AAAAAA
1 AAAAAA
22335942 TGACAATGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 12 0.43
24 16 0.57
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (23 bp):
AAAAAAAAAAAAAAAAAAAAAAC
Found at i:22336174 original size:24 final size:24
Alignment explanation
Indices: 22336142--22336190 Score: 73
Period size: 24 Copynumber: 2.0 Consensus size: 24
22336132 CTTTCTTTTG
*
22336142 TATTTTATGTAT-TTTATTATTTAT
1 TATTATATGTATATTT-TTATTTAT
22336166 TATTATATGTATATTTTTATTTAT
1 TATTATATGTATATTTTTATTTAT
22336190 T
1 T
22336191 TTTTTCTTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.87
25 3 0.13
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (24 bp):
TATTATATGTATATTTTTATTTAT
Found at i:22336226 original size:26 final size:26
Alignment explanation
Indices: 22336153--22336227 Score: 73
Period size: 26 Copynumber: 2.8 Consensus size: 26
22336143 ATTTTATGTA
*
22336153 TTTTATTATTTATTATTATATGT-ATAT
1 TTTTTTTATTTA-TATTAT-TGTAATAT
* *
22336180 TTTTATTTATTT-TTTTCTTGTAATAT
1 TTTT-TTTATTTATATTATTGTAATAT
*
22336206 TTTTTTTATTTATCTTATTGTA
1 TTTTTTTATTTATATTATTGTA
22336228 TTATCTGTTA
Statistics
Matches: 40, Mismatches: 5, Indels: 7
0.77 0.10 0.13
Matches are distributed among these distances:
25 10 0.25
26 20 0.50
27 4 0.10
28 6 0.15
ACGTcount: A:0.23, C:0.03, G:0.04, T:0.71
Consensus pattern (26 bp):
TTTTTTTATTTATATTATTGTAATAT
Found at i:22336819 original size:19 final size:19
Alignment explanation
Indices: 22336795--22336831 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
22336785 TCCGACGAAA
*
22336795 AAAACCCAGATTCGATGAC
1 AAAACCCAGAATCGATGAC
22336814 AAAACCCAGAATCGATGA
1 AAAACCCAGAATCGATGA
22336832 ATCTTCAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.24, G:0.16, T:0.14
Consensus pattern (19 bp):
AAAACCCAGAATCGATGAC
Found at i:22337258 original size:5 final size:5
Alignment explanation
Indices: 22337227--22337310 Score: 55
Period size: 5 Copynumber: 16.2 Consensus size: 5
22337217 TTAGATTAGG
* * * *
22337227 TTTAT TTAAT ATTCT TTTAT CTTTAT TTTAT TTTATT TTTGT TTTACT
1 TTTAT TTTAT TTTAT TTTAT -TTTAT TTTAT TTTA-T TTTAT TTTA-T
* *
22337275 TTTCT TTATTT TTTAT TTT-T ATTTA- TTTAT TTTAT T
1 TTTAT TT-TAT TTTAT TTTAT -TTTAT TTTAT TTTAT T
22337311 ATTCTGTTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
4 5 0.08
5 39 0.64
6 17 0.28
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:22337265 original size:21 final size:21
Alignment explanation
Indices: 22337195--22337310 Score: 69
Period size: 21 Copynumber: 5.5 Consensus size: 21
22337185 TGTTTATTTG
*
22337195 TTTATTTTTTTTTTA-TTTAT
1 TTTATTTTATTTTTATTTTAT
** ** *
22337215 TATTAGATTAGGTTTATTTAAT
1 T-TTATTTTATTTTTATTTTAT
* * *
22337237 ATTCTTTTATCTTTATTTTAT
1 TTTATTTTATTTTTATTTTAT
*
22337258 TTTATTTT-TGTTTTACTTTTCT
1 TTTATTTTAT-TTTTA-TTTTAT
*
22337280 TTATTTTTTATTTTTA-TTTA-
1 TT-TATTTTATTTTTATTTTAT
22337300 TTTATTTTATT
1 TTTATTTTATT
22337311 ATTCTGTTTT
Statistics
Matches: 70, Mismatches: 20, Indels: 13
0.68 0.19 0.13
Matches are distributed among these distances:
19 8 0.11
20 4 0.06
21 36 0.51
22 11 0.16
23 10 0.14
24 1 0.01
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.74
Consensus pattern (21 bp):
TTTATTTTATTTTTATTTTAT
Found at i:22337276 original size:26 final size:26
Alignment explanation
Indices: 22337241--22337325 Score: 76
Period size: 26 Copynumber: 3.4 Consensus size: 26
22337231 TTTAATATTC
22337241 TTTTATCTTTATTTTATTTTATTTTTG
1 TTTTA-CTTTATTTTATTTTATTTTTG
*
22337268 TTTTACTTT-TCTTTA-TTT-TTTAT-
1 TTTTACTTTAT-TTTATTTTATTTTTG
22337291 TTTTA-TTTA-TTTATTTTATTATTCTG
1 TTTTACTTTATTTTATTTTATT-TT-TG
22337317 TTTT-CTTTA
1 TTTTACTTTA
22337326 AATAAAAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
21 4 0.08
22 6 0.12
23 7 0.15
24 5 0.10
25 5 0.10
26 16 0.33
27 5 0.10
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.76
Consensus pattern (26 bp):
TTTTACTTTATTTTATTTTATTTTTG
Found at i:22337288 original size:17 final size:17
Alignment explanation
Indices: 22337252--22337302 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
22337242 TTTATCTTTA
22337252 TTTTA-TTTTATTT-TT
1 TTTTACTTTTATTTATT
*
22337267 GTTTTACTTTTCTTTATT
1 -TTTTACTTTTATTTATT
*
22337285 TTTTATTTTTATTTATT
1 TTTTACTTTTATTTATT
22337302 T
1 T
22337303 ATTTTATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
16 5 0.17
17 23 0.77
18 2 0.07
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTACTTTTATTTATT
Found at i:22337320 original size:13 final size:13
Alignment explanation
Indices: 22337248--22337310 Score: 53
Period size: 13 Copynumber: 4.8 Consensus size: 13
22337238 TTCTTTTATC
22337248 TTTATTTTATTTTA
1 TTTATTTTA-TTTA
*
22337262 TTT-TTGT-TTTA
1 TTTATTTTATTTA
22337273 CTTT-TCTTTATTT-
1 -TTTAT-TTTATTTA
22337286 TTTATTTTTATTTA
1 TTTA-TTTTATTTA
22337300 TTTATTTTATT
1 TTTATTTTATT
22337311 ATTCTGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
11 4 0.10
12 7 0.17
13 19 0.46
14 11 0.27
ACGTcount: A:0.16, C:0.03, G:0.02, T:0.79
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:22337400 original size:30 final size:30
Alignment explanation
Indices: 22337366--22337457 Score: 80
Period size: 30 Copynumber: 3.1 Consensus size: 30
22337356 TTTTAGGGAA
22337366 AAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAGTTGAAAGTATCAATTTTCCTTAAAAAT
* ** ** * **
22337396 AAGTTTAAAAAAAAAATTATT-TTTGAGGAA-
1 AAGTTGAAAGTATCAATT-TTCCTT-AAAAAT
22337426 AAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAGTTGAAAGTATCAATTTTCCTTAAAAAT
22337456 AA
1 AA
22337458 ATTTTCAAAA
Statistics
Matches: 42, Mismatches: 16, Indels: 8
0.64 0.24 0.12
Matches are distributed among these distances:
29 5 0.12
30 32 0.76
31 5 0.12
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.35
Consensus pattern (30 bp):
AAGTTGAAAGTATCAATTTTCCTTAAAAAT
Found at i:22337409 original size:60 final size:59
Alignment explanation
Indices: 22337345--22337563 Score: 272
Period size: 60 Copynumber: 3.7 Consensus size: 59
22337335 TCAAAATTTC
*
22337345 AAAAAAAAATATTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTTAA
1 AAAAAAAAATATTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAA
*
22337404 AAAAAAAATTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAA
1 AAAAAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTT-AA
***
22337466 AAAAAGGGAT-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT--
1 AAAAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAA
**
22337522 -CCAAAAAATACTTTTG-GGAAAAAGTTGAAAGTATC-ATTTTCC
1 AAAAAAAAATA-TTTTGAGG-AAAAGTTGAAAGTATCAATTTTCC
22337564 CTACACAAGA
Statistics
Matches: 142, Mismatches: 11, Indels: 17
0.84 0.06 0.10
Matches are distributed among these distances:
55 4 0.03
56 9 0.06
57 21 0.15
59 13 0.09
60 83 0.58
61 4 0.03
62 8 0.06
ACGTcount: A:0.47, C:0.07, G:0.13, T:0.33
Consensus pattern (59 bp):
AAAAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTAA
Found at i:22337487 original size:120 final size:116
Alignment explanation
Indices: 22337330--22337563 Score: 319
Period size: 120 Copynumber: 2.0 Consensus size: 116
22337320 TCTTTAAATA
*
22337330 AAAAATCAAAATTTCAAAAAAAAATATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
1 AAAAATCAAAATTTCAAAAAAAAAGATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
* *
22337395 TAAGTTTAAAAAAAAAATTATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTT
66 TAAATTT--AAAAAAAA-TACTTTTG-GGAAAAAGTTGAAAGTATC-ATTTTCCTT
* ** *
22337450 AAAAAT-AAATTTTCAAAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
1 AAAAATCAAAATTTCAAAAAAAAAGATTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAA
**
22337514 ATAAATTTCCAAAAAATACTTTTGGGAAAAAGTTGAAAGTATCATTTTCC
65 ATAAATTTAAAAAAAATACTTTTGGGAAAAAGTTGAAAGTATCATTTTCC
22337564 CTACACAAGA
Statistics
Matches: 103, Mismatches: 9, Indels: 8
0.86 0.08 0.07
Matches are distributed among these distances:
116 9 0.09
117 23 0.22
118 6 0.06
119 20 0.19
120 45 0.44
ACGTcount: A:0.47, C:0.08, G:0.12, T:0.33
Consensus pattern (116 bp):
AAAAATCAAAATTTCAAAAAAAAAGATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
TAAATTTAAAAAAAATACTTTTGGGAAAAAGTTGAAAGTATCATTTTCCTT
Found at i:22339808 original size:896 final size:897
Alignment explanation
Indices: 22338436--22340297 Score: 2658
Period size: 896 Copynumber: 2.1 Consensus size: 897
22338426 GTTGACTTAG
* * * * * * *
22338436 GCATACGAAGTTCATTCCCAGTCTAAGATCATATCGGACCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
22338501 CTCGAGCATGTGCTGGTGCCTTATTTTTCTTCGTCGGGGCAACATTGTCGGAGCATCGTCGGAGC
66 CTCGGGCATGTGCTAGTGCCACATTTTTC-T--TC---G---C--TGTCGCACCATCATCGGAGC
* * *
22338566 ATCACCGGAGAACTTGACCGACGGCATTGGGGTTTCGACAATCGGGAGGGCCGGGGGGTGTGCGC
120 ATCACCGGAGAACCTGACCGACGGCATTGCGGTTCCGACAATCGGGAGGGCCGGGGGGTGTGCGC
* *
22338631 ACAGGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTC
185 ACAGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
22338696 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
250 AAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG
* * *
22338761 TGTCTGGAATAGGGACACTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
315 TGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTG
* * *
22338826 AATGTTTTGTGCAAGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGACCAAAACTCCT
380 AATGTTTTGTGCAAGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTTGGACCAAAACTCCA
* * * *
22338891 TCCGAACAAATTTTAAAAAATCCCGAACCATAAAAATTTTTAAAAATTGTGAAAAATAGAAAACG
445 TCCGAAAAAATTTTAAAAAATCCCGAACCATAAAAA--GTTAAAAATGGTGAAAAACAGAAAACG
* *
22338956 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATA
508 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATA
* *
22339021 AAAATGGTATT-GCATGCAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCA
573 AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCATAAACCCACATACCACCCTATCGATCCA
* * * *
22339085 TGCCTTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCG-TCC-GCTCATTTCGTC
638 CGCCTTGCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCGCCGGCTCATTTCGTC
* * * *
22339148 GGTTGGCTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAG
703 GGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAA
* * *
22339213 TAGGATCGACAGCACGTAAAGGGAGACCCAACCGATCCCCAGCTTGCGCATCCCGCCCCTTTGGC
768 CAGGATCGACAGCACGCAAAGGGAGACCCAACCGATCCCCAGCTTGCGCAT-CCGCCCCTCTGGC
* *
22339278 CGGTTGAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-TCTA
832 CGGCTGAGCACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
22339342 A
897 A
* **
22339343 GCATACGGAGTTCATTCCCAATGTAAGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
22339408 CTCGGGCATGTGCTAGTGCCACATTTTTCTTCGCTGTCGCACCATCATCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTAGTGCCACATTTTTCTTCGCTGTCGCACCATCATCGGAGCATCACCGGAGA
* * * *
22339473 ACCTGACCGGCGGCATTGCGGTTCCGACGATC-GGAGGGGCCGGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGACGGCATTGCGGTTCCGACAATCGGGA-GGGCCGGGGGGTGTGCGCACAGGATGTG
22339537 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
*
22339602 ACCCCC-TAAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAA
260 ACCCCCTTAAA-GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
22339666 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATTTTGTT
324 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATGTT-TT
* * *
22339731 GTGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCATCCGAAAA
388 GTGCAAGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTTGGACCAAAACTCCATCCGAAAA
** * * *
22339796 AATTTT-AAAAATCTTGAACCGTAAAAAGTTCAAAATGGTGAAAAACAGAAAATGAGTCGTCTTG
453 AATTTTAAAAAATCCCGAACCATAAAAAGTTAAAAATGGTGAAAAACAGAAAACGAGTCGTCTTG
*
22339860 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTAACAAGCCATAAAAATGGCAT
518 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCAT
* * * * *
22339925 TGGCATGCAGAAATATGAAGATGTGCATAAACCCACCTACCACTCTATCTATCCACGGCTTGCAC
583 TGGCATGCAAAAATATGAAGATGTGCATAAACCCACATACCACCCTATCGATCCACGCCTTGCAC
* *
22339990 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGGCTCGTTTTGTCGGTTGGCT
648 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--CGCCGGCTCATTTCGTCGGTTGGCT
* * * **
22340055 TAGGCATATAGAGTTCATTCCTAGTTTAAGATCAGACCAGATGGAGGGTTGTGGCAACAGGATCG
711 TAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAACAGGATCG
* * * * *** *
22340120 GCAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGC
776 ACAGCACGCAAAGGGAGACCCAACCGATCCCCAGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGC
* * * * *
22340185 GCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTTTAA
841 ACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
22340242 GCATACGGAGTTGATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
22340298 GGATCGGTAG
Statistics
Matches: 849, Mismatches: 97, Indels: 26
0.87 0.10 0.03
Matches are distributed among these distances:
894 94 0.11
895 99 0.12
896 277 0.33
897 66 0.08
898 69 0.08
899 160 0.19
901 1 0.00
904 2 0.00
906 1 0.00
907 80 0.09
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTAGTGCCACATTTTTCTTCGCTGTCGCACCATCATCGGAGCATCACCGGAGA
ACCTGACCGACGGCATTGCGGTTCCGACAATCGGGAGGGCCGGGGGGTGTGCGCACAGGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATA
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATGTTTTGTG
CAAGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTTGGACCAAAACTCCATCCGAAAAAAT
TTTAAAAAATCCCGAACCATAAAAAGTTAAAAATGGTGAAAAACAGAAAACGAGTCGTCTTGCCA
TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCATTGG
CATGCAAAAATATGAAGATGTGCATAAACCCACATACCACCCTATCGATCCACGCCTTGCACATC
CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCGCCGGCTCATTTCGTCGGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAACAGGATCGACAGC
ACGCAAAGGGAGACCCAACCGATCCCCAGCTTGCGCATCCGCCCCTCTGGCCGGCTGAGCACCCG
CACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:22340247 original size:26 final size:26
Alignment explanation
Indices: 22340216--22340268 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22340206 GTTGACTTAG
*
22340216 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
22340242 GCATACGGAGTTGATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
22340268 G
1 G
22340269 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:22341986 original size:26 final size:26
Alignment explanation
Indices: 22341950--22342003 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
22341940 GGGTTGACTT
22341950 AGCATACAGAG-TTCATTCCCAGTCTA
1 AGCATACAGAGTTTCATT-CCAGTCTA
22341976 AGCATACAGAGTTTCATTCCAGTCTA
1 AGCATACAGAGTTTCATTCCAGTCTA
22342002 AG
1 AG
22342004 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.31, C:0.24, G:0.17, T:0.28
Consensus pattern (26 bp):
AGCATACAGAGTTTCATTCCAGTCTA
Found at i:22342900 original size:26 final size:26
Alignment explanation
Indices: 22342870--22342922 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22342860 GTTAACTTAG
* **
22342870 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22342896 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22342922 G
1 G
22342923 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22343767 original size:26 final size:26
Alignment explanation
Indices: 22343737--22343789 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22343727 GTTGACTTAG
22343737 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTGCC-AGTCTAA
*
22343763 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
22343789 G
1 G
22343790 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:22353575 original size:819 final size:819
Alignment explanation
Indices: 22351999--22353639 Score: 2969
Period size: 819 Copynumber: 2.0 Consensus size: 819
22351989 CATGATAATG
22351999 AATCTGACCACAATCCCATCCATATTCATGCTTTTCTTTTCCAGCTAGTGAGAACACAATCTCCT
1 AATCTGACCACAATCCCATCCATATTCATGCTTTTCTTTTCCAGCTAGTGAGAACACAATCTCCT
*
22352064 TATTCCAGCCCACCTTATTTATGCATTTATTTAGTGAATTTGGACCAAAGATAAACCCATCTTAT
66 TATTCCAACCCACCTTATTTATGCATTTATTTAGTGAATTTGGACCAAAGATAAACCCATCTTAT
* *
22352129 TTTTGGATAAGTTTGCTTTAGTCTCAATCTAAGTTGTATGATGTACAAACACTCCGGTGTCAATA
131 TTTTGGATAAGTTTACTTTAGTCTCAATCTAAATTGTATGATGTACAAACACTCCGGTGTCAATA
* *
22352194 TATATATGTACATTTGATGTTGTCGTAATTTGGTAGTGATTATAGCCTTTAAAATTGGTAATTTA
196 TATATATGTACATTTGATGTTGTCGTAATTTGGCAGTGATTATAGACTTTAAAATTGGTAATTTA
22352259 TACACTTTTGATTTTCAGGTCCATTAGGGTTAACTCCTTAGGGTAGATTTAGTTATGGTTATTTT
261 TACACTTTTGATTTTCAGGTCCATTAGGGTTAACTCCTTAGGGTAGATTTAGTTATGGTTATTTT
*
22352324 GATAATAAAAATCCAAGGCTTTTAAATAATCTTGTTTTGAATCACAGTAATCCATCATTGTTAAA
326 GATAATAAAAATCCAAGGCTTTTAAATAATCTTGTTCTGAATCACAGTAATCCATCATTGTTAAA
* *
22352389 AATTCTTAAAAATACACAAAATAAAAGTAATAAATTTAGATAAATATGAAGAACCCAAATCTTAG
391 AATCCTTAAAAATACACAAAATAAAAGTAATAAATTTAGATAAATATGAAAAACCCAAATCTTAG
*
22352454 CACAATTAAATACAAAAAATTGCCAAAGTTGCAAAATGCAAGGTCCATTTGAACCATGTGAAAAG
456 CACAATTAAATACAAAAAATTGCCAAAGTTGCAAAATGCAAGGTCCAGTTGAACCATGTGAAAAG
* *
22352519 TTGGTGGGAAGAGGAACAAGATGCAAACACTCACATGGAAATTAACGCCTTCTAACATGATCGAT
521 TTGGTGGGAAGAGGAACAAGATGCAAACACTAACATGGAAATTAACGCCTTCCAACATGATCGAT
22352584 TATCTTCAACGATATTAATTCATAATTTAAACCATACAGCTCCATTCCACCATTTCTTATTGGTA
586 TATCTTCAACGATATTAATTCATAATTTAAACCATACAGCTCCATTCCACCATTTCTTATTGGTA
*
22352649 AATGATATCTTTAAAAAGGAAAAAAAAAATCATAGAGGTTTGCTCATAAAGTCAATCCACTACAA
651 AATGATATCTTTAAAAAGGAAAAAAAAAATCAGAGAGGTTTGCTCATAAAGTCAATCCACTACAA
22352714 TTATTCCAATAAAAAATCTTCATCTTAAGTTCCCAAAGTTTTCAAACAAACTATGATAGAATGGA
716 TTATTCCAATAAAAAATCTTCATCTTAAGTTCCCAAAGTTTTCAAACAAACTATGATAGAATGGA
*
22352779 TTTTCACAATTACCCATCCATATCATTTCATGAATTCAA
781 TTGTCACAATTACCCATCCATATCATTTCATGAATTCAA
* *
22352818 AATCTGACCACAATCCCATCCATATTCATGCTTTTCTTTTCTAGCTTGTGAGAACACAATCTCCT
1 AATCTGACCACAATCCCATCCATATTCATGCTTTTCTTTTCCAGCTAGTGAGAACACAATCTCCT
* *
22352883 TATTCCAACCCACCTTATTTATGCATTTATTTAGTGAATTTGGACCAAAGATAGACTCATCTTAT
66 TATTCCAACCCACCTTATTTATGCATTTATTTAGTGAATTTGGACCAAAGATAAACCCATCTTAT
* * **
22352948 TTTTGGATAAGTTTACTTTAGTCTCAGTCTAAATTGTATGATGTACAGACACTTTGGTGTCAATA
131 TTTTGGATAAGTTTACTTTAGTCTCAATCTAAATTGTATGATGTACAAACACTCCGGTGTCAATA
*
22353013 TATATATGTACATTTGATGTTGTCGTAATTTGGCAGTGATTATAGACTTTAAAATTGGTACTTTA
196 TATATATGTACATTTGATGTTGTCGTAATTTGGCAGTGATTATAGACTTTAAAATTGGTAATTTA
*
22353078 TACACTTTTGATTTTCAGGTCCATTAGGGTTAACTCTTTAGGGTAGATTTAGTTATGGTTATTTT
261 TACACTTTTGATTTTCAGGTCCATTAGGGTTAACTCCTTAGGGTAGATTTAGTTATGGTTATTTT
22353143 GATAATAAAAATCCAAGGCTTTTAAATAATCTTGTTCTGAATCACAGTAATCCATCATTGTTAAA
326 GATAATAAAAATCCAAGGCTTTTAAATAATCTTGTTCTGAATCACAGTAATCCATCATTGTTAAA
* *
22353208 AATCCTTAAAAAATACACAAAATAAAAGTAATAGATTTAGATAAATCTGAAAAACCCAAATCTTA
391 AATCCTT-AAAAATACACAAAATAAAAGTAATAAATTTAGATAAATATGAAAAACCCAAATCTTA
* *
22353273 TCACAATTAAATACAAAAAATTGCCAAAGTTGCAAAATGCAAGGTCCAGTTGAACCATGTGAAGA
455 GCACAATTAAATACAAAAAATTGCCAAAGTTGCAAAATGCAAGGTCCAGTTGAACCATGTGAAAA
* *
22353338 GTTGGT-GGAAGAGGAACAAGATGCAAACACTAACATGGAAATTAACGTCTTCCAACATGATTGA
520 GTTGGTGGGAAGAGGAACAAGATGCAAACACTAACATGGAAATTAACGCCTTCCAACATGATCGA
* *
22353402 TTATCTTCAATGATATTAATTCATAATTTAAACCATACAGCTCCATTCCACCATTTTTTATTGGT
585 TTATCTTCAACGATATTAATTCATAATTTAAACCATACAGCTCCATTCCACCATTTCTTATTGGT
22353467 AAATGATATCTTTAAAAAGGAAAAAAAAAATCAGAGAGGTTTGCTCATAAAGTCAATCCACTACA
650 AAATGATATCTTTAAAAAGGAAAAAAAAAATCAGAGAGGTTTGCTCATAAAGTCAATCCACTACA
*
22353532 ATTATTCCAATAAAAAATCTTCATCTTAAGTTCCTAAAGTTTTCAAACAAACTATGATAGAATGG
715 ATTATTCCAATAAAAAATCTTCATCTTAAGTTCCCAAAGTTTTCAAACAAACTATGATAGAATGG
*
22353597 ATTGTCACAATTACCCATCCATATCATTTCATGAATTCGA
780 ATTGTCACAATTACCCATCCATATCATTTCATGAATTCAA
22353637 AAT
1 AAT
22353640 TTTCATTTCA
Statistics
Matches: 788, Mismatches: 33, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
819 666 0.85
820 122 0.15
ACGTcount: A:0.36, C:0.17, G:0.13, T:0.34
Consensus pattern (819 bp):
AATCTGACCACAATCCCATCCATATTCATGCTTTTCTTTTCCAGCTAGTGAGAACACAATCTCCT
TATTCCAACCCACCTTATTTATGCATTTATTTAGTGAATTTGGACCAAAGATAAACCCATCTTAT
TTTTGGATAAGTTTACTTTAGTCTCAATCTAAATTGTATGATGTACAAACACTCCGGTGTCAATA
TATATATGTACATTTGATGTTGTCGTAATTTGGCAGTGATTATAGACTTTAAAATTGGTAATTTA
TACACTTTTGATTTTCAGGTCCATTAGGGTTAACTCCTTAGGGTAGATTTAGTTATGGTTATTTT
GATAATAAAAATCCAAGGCTTTTAAATAATCTTGTTCTGAATCACAGTAATCCATCATTGTTAAA
AATCCTTAAAAATACACAAAATAAAAGTAATAAATTTAGATAAATATGAAAAACCCAAATCTTAG
CACAATTAAATACAAAAAATTGCCAAAGTTGCAAAATGCAAGGTCCAGTTGAACCATGTGAAAAG
TTGGTGGGAAGAGGAACAAGATGCAAACACTAACATGGAAATTAACGCCTTCCAACATGATCGAT
TATCTTCAACGATATTAATTCATAATTTAAACCATACAGCTCCATTCCACCATTTCTTATTGGTA
AATGATATCTTTAAAAAGGAAAAAAAAAATCAGAGAGGTTTGCTCATAAAGTCAATCCACTACAA
TTATTCCAATAAAAAATCTTCATCTTAAGTTCCCAAAGTTTTCAAACAAACTATGATAGAATGGA
TTGTCACAATTACCCATCCATATCATTTCATGAATTCAA
Found at i:22354185 original size:2 final size:2
Alignment explanation
Indices: 22354180--22354213 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
22354170 ATATATATAT
* *
22354180 AG AG AG AG AG AG AC AG AG AG AA AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
22354214 GATCAATCAA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.03, G:0.44, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22354408 original size:2 final size:2
Alignment explanation
Indices: 22354401--22354439 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
22354391 CCTACTTATT
22354401 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22354440 CTAAAAGTCG
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:22360120 original size:83 final size:82
Alignment explanation
Indices: 22359987--22360308 Score: 276
Period size: 83 Copynumber: 3.9 Consensus size: 82
22359977 GACCTTGGAC
** * * *
22359987 ATAATCACCAAGTCCTCCAAATAAGATTCATAAG-TCTTCTAAGCTGAATTTGTTTTAGAGTAGA
1 ATAATCACCAAGT-CTCTGAATAAGATTCGTAAGTTTTTC-AAGCTAAATTTGTTTTAGAGTAGA
**
22360051 GATTTGTAAGACTCCCAAA
64 GATTTGTAAGACTCCCAGT
* *
22360070 ATAATCACCAAGTTCTCTGGATAAGATTCGTAAGTTTTTCGAGCTAAATTTGTTTTAGAGTTA-A
1 ATAATCACCAAG-TCTCTGAATAAGATTCGTAAGTTTTTCAAGCTAAATTTGTTTTAGAG-TAGA
* *
22360134 GATTTGTAAGACCTTCGAGT
64 GATTTGTAAGA-CTCCCAGT
* * * * * * * *
22360154 ATAATCTCCAAGTCTCT-AAGTAAGATTTGTTAGTCTTTT-GAGTTGAATCTGTTTTAGAGTCGA
1 ATAATCACCAAGTCTCTGAA-TAAGATTCGTAAGT-TTTTCAAGCTAAATTTGTTTTAGAGTAGA
*
22360217 GATTTGTAAAAC-CTCCAGGT
64 GATTTGTAAGACTC-CCA-GT
* * *** * * *
22360237 ATAATCTCCAAGTCTTTGGGCAATATTCGTAAGTTTTTCAAGTTAAATTTTTTTTAGAGTAGAGA
1 ATAATCACCAAGTCTCTGAATAAGATTCGTAAGTTTTTCAAGCTAAATTTGTTTTAGAGTAGAGA
22360302 TTTGTAA
66 TTTGTAA
22360309 AACTTCTGCT
Statistics
Matches: 194, Mismatches: 34, Indels: 22
0.78 0.14 0.09
Matches are distributed among these distances:
82 9 0.05
83 159 0.82
84 26 0.13
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (82 bp):
ATAATCACCAAGTCTCTGAATAAGATTCGTAAGTTTTTCAAGCTAAATTTGTTTTAGAGTAGAGA
TTTGTAAGACTCCCAGT
Found at i:22360309 original size:83 final size:83
Alignment explanation
Indices: 22360033--22360311 Score: 298
Period size: 83 Copynumber: 3.4 Consensus size: 83
22360023 TTCTAAGCTG
* ** * *
22360033 AATTTGTTTTAGAGTAGAGATTTGTAAGA-CTCCCA-AAATAATCACCAAGTTCTCTGGATAAGA
1 AATTTGTTTTAGAGTAGAGATTTGTAAAACCT-CCAGGTATAATCTCCAAG-TCTCTGGGTAAGA
*
22360096 TTCGTAAGTTTTTCGAGCTA
64 TTCGTAAGTTTTTCGAGTTA
* * **
22360116 AATTTGTTTTAGAGTTA-AGATTTGTAAGACCTTC-GAGTATAATCTCCAAGTCTCTAAGTAAGA
1 AATTTGTTTTAGAG-TAGAGATTTGTAAAACCTCCAG-GTATAATCTCCAAGTCTCTGGGTAAGA
* * *
22360179 TTTGTTAGTCTTTT-GAGTTG
64 TTCGTAAGT-TTTTCGAGTTA
* * * * *
22360199 AATCTGTTTTAGAGTCGAGATTTGTAAAACCTCCAGGTATAATCTCCAAGTCTTTGGGCAATATT
1 AATTTGTTTTAGAGTAGAGATTTGTAAAACCTCCAGGTATAATCTCCAAGTCTCTGGGTAAGATT
*
22360264 CGTAAGTTTTTCAAGTTA
66 CGTAAGTTTTTCGAGTTA
*
22360282 AATTTTTTTTAGAGTAGAGATTTGTAAAAC
1 AATTTGTTTTAGAGTAGAGATTTGTAAAAC
22360312 TTCTGCTCAT
Statistics
Matches: 161, Mismatches: 27, Indels: 16
0.79 0.13 0.08
Matches are distributed among these distances:
82 5 0.03
83 136 0.84
84 20 0.12
ACGTcount: A:0.30, C:0.13, G:0.18, T:0.39
Consensus pattern (83 bp):
AATTTGTTTTAGAGTAGAGATTTGTAAAACCTCCAGGTATAATCTCCAAGTCTCTGGGTAAGATT
CGTAAGTTTTTCGAGTTA
Found at i:22366182 original size:26 final size:26
Alignment explanation
Indices: 22366146--22366198 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22366136 GTTGACTTAG
22366146 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCGA-TCTAA
*
22366172 GCATATGGAGTTCATTCCCGATCTAA
1 GCATACGGAGTTCATTCCCGATCTAA
22366198 G
1 G
22366199 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCGATCTAA
Found at i:22366295 original size:11 final size:11
Alignment explanation
Indices: 22366279--22366311 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
22366269 ACCAGGGCAC
22366279 CATCGTCGGAG
1 CATCGTCGGAG
22366290 CATCGTCGGAG
1 CATCGTCGGAG
22366301 CATCGTCGGAG
1 CATCGTCGGAG
22366312 AACCCGACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:22367669 original size:27 final size:27
Alignment explanation
Indices: 22367639--22367713 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
22367629 TTTTCTTTTG
*
22367639 TATTTTATGTAT-TTTATTATTTATTAT
1 TATTATATGTATATTT-TTATTTATTAT
22367666 TATTATATGTATATTTTTATTTATT-T
1 TATTATATGTATATTTTTATTTATTAT
22367692 T-TT-T-TGTAATATTTTT-TTTATT
1 TATTATATGT-ATATTTTTATTTATT
22367714 TATCTTATTG
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
23 9 0.20
24 9 0.20
25 2 0.04
26 2 0.04
27 20 0.44
28 3 0.07
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (27 bp):
TATTATATGTATATTTTTATTTATTAT
Found at i:22367689 original size:24 final size:24
Alignment explanation
Indices: 22367653--22367714 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 24
22367643 TTATGTATTT
22367653 TATTATTTA-TTATTATTATATGT-A
1 TATT-TTTATTTATT-TTATATGTAA
* *
22367677 TATTTTTATTTATTTTTTTTGTAA
1 TATTTTTATTTATTTTATATGTAA
22367701 TATTTTT-TTTATTT
1 TATTTTTATTTATTT
22367715 ATCTTATTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 17 0.50
24 17 0.50
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (24 bp):
TATTTTTATTTATTTTATATGTAA
Found at i:22368325 original size:20 final size:20
Alignment explanation
Indices: 22368292--22368329 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22368282 TCCGGTGAAC
*
22368292 TTCCGGTGAAAAAACCCAGA
1 TTCCGATGAAAAAACCCAGA
*
22368312 TTCCGATGACAAAACCCA
1 TTCCGATGAAAAAACCCA
22368330 AAATCCGGTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.29, G:0.16, T:0.16
Consensus pattern (20 bp):
TTCCGATGAAAAAACCCAGA
Found at i:22368686 original size:18 final size:18
Alignment explanation
Indices: 22368655--22368823 Score: 58
Period size: 18 Copynumber: 8.9 Consensus size: 18
22368645 CTCCATGTTT
*
22368655 TTTTTTCTTTTTTTTTTAA
1 TTTTTT-TTATTTTTTTAA
**
22368674 TTTTTTTTATTTTCATTTCT
1 TTTTTTTTATTTT--TTTAA
* *
22368694 TTGTTTATTTGTTTTTTTTA
1 TT-TTT-TTTATTTTTTTAA
*
22368714 TTTTTTTTATTTATTT-A
1 TTTTTTTTATTTTTTTAA
*** *
22368731 -TTAGATTAGGTTTATTTAA
1 TTTTTTTTA--TTTTTTTAA
*
22368750 TATTCTTTTTATCTTTATTTTA
1 T-TT-TTTTTAT-TTT-TTTAA
* * *
22368772 TTTTCATTT-TTGTTTTAC
1 TTTT-TTTTATTTTTTTAA
*
22368790 TTTTCTTTATTTTTTT-A
1 TTTTTTTTATTTTTTTAA
22368807 TTTTTATTTATTTTTTT
1 TTTTT-TTTATTTTTTT
22368824 TATTATTCTA
Statistics
Matches: 111, Mismatches: 24, Indels: 31
0.67 0.14 0.19
Matches are distributed among these distances:
16 5 0.05
17 8 0.07
18 46 0.41
19 12 0.11
20 13 0.12
21 12 0.11
22 15 0.14
ACGTcount: A:0.15, C:0.05, G:0.04, T:0.77
Consensus pattern (18 bp):
TTTTTTTTATTTTTTTAA
Found at i:22368693 original size:31 final size:31
Alignment explanation
Indices: 22368658--22368717 Score: 86
Period size: 31 Copynumber: 1.9 Consensus size: 31
22368648 CATGTTTTTT
*
22368658 TTTCTTT-TTTTTTTAATTTTTTTTATTTTCA
1 TTTCTTTGTTTATTT-ATTTTTTTTATTTTCA
*
22368689 TTTCTTTGTTTATTTGTTTTTTTTATTTT
1 TTTCTTTGTTTATTTATTTTTTTTATTTT
22368718 TTTTATTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
31 20 0.77
32 6 0.23
ACGTcount: A:0.10, C:0.05, G:0.03, T:0.82
Consensus pattern (31 bp):
TTTCTTTGTTTATTTATTTTTTTTATTTTCA
Found at i:22368772 original size:11 final size:10
Alignment explanation
Indices: 22368756--22368832 Score: 54
Period size: 10 Copynumber: 7.7 Consensus size: 10
22368746 TTAATATTCT
22368756 TTTTATCTTTA
1 TTTT-TCTTTA
22368767 TTTTAT-TTTCA
1 TTTT-TCTTT-A
*
22368778 TTTTTGTTTTA
1 TTTTT-CTTTA
*
22368789 CTTTTCTTTA
1 TTTTTCTTTA
22368799 -TTTT-TTTA
1 TTTTTCTTTA
*
22368807 TTTTTATTTA
1 TTTTTCTTTA
22368817 TTTTT-TTTA
1 TTTTTCTTTA
*
22368826 TTATTCT
1 TTTTTCT
22368833 ATTTTCTTTA
Statistics
Matches: 57, Mismatches: 3, Indels: 13
0.78 0.04 0.18
Matches are distributed among these distances:
8 4 0.07
9 16 0.28
10 18 0.32
11 16 0.28
12 3 0.05
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.78
Consensus pattern (10 bp):
TTTTTCTTTA
Found at i:22368788 original size:22 final size:21
Alignment explanation
Indices: 22368652--22368838 Score: 56
Period size: 22 Copynumber: 9.0 Consensus size: 21
22368642 CCGCTCCATG
* * *
22368652 TTTTTTTTTCTTTTTTTTTTA
1 TTTTTTTTTATTTTATTTTCA
*
22368673 ATTTTTTTTATTTTCA-TTTC-
1 TTTTTTTTTATTTT-ATTTTCA
*
22368693 TTTGTTTATTTGTTTT-TTTT-A
1 TTT-TTT-TTTATTTTATTTTCA
*
22368714 -TTTTTTTTA-TTTATTTATTA
1 TTTTTTTTTATTTTATTT-TCA
* *** * *
22368734 GATTAGGTTTATTTAATATTC-
1 -TTTTTTTTTATTTTATTTTCA
22368755 TTTTTATCTTTATTTTATTTTCA
1 TTTTT-T-TTTATTTTATTTTCA
*
22368778 TTTTTGTTTTACTTTT-CTTT-A
1 TTTTT-TTTTA-TTTTATTTTCA
*
22368799 TTTTTTTAT-TTTTA-TTT-A
1 TTTTTTTTTATTTTATTTTCA
*
22368817 TTTTTTTTATTATTCTATTTTC
1 -TTTTTTT-TTATTTTATTTTC
22368839 TTTAAATAAA
Statistics
Matches: 121, Mismatches: 24, Indels: 40
0.65 0.13 0.22
Matches are distributed among these distances:
17 3 0.02
18 14 0.12
19 11 0.09
20 11 0.09
21 31 0.26
22 36 0.30
23 15 0.12
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.76
Consensus pattern (21 bp):
TTTTTTTTTATTTTATTTTCA
Found at i:22368842 original size:17 final size:16
Alignment explanation
Indices: 22368796--22368842 Score: 53
Period size: 17 Copynumber: 3.0 Consensus size: 16
22368786 TTACTTTTCT
*
22368796 TTATTT-TTTTATTT-
1 TTATTTATTTTCTTTA
*
22368810 TTATTTATTTTTTTTA
1 TTATTTATTTTCTTTA
22368826 TTATTCTATTTTCTTTA
1 TTATT-TATTTTCTTTA
22368843 AATAAAAAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
14 6 0.21
15 7 0.25
16 5 0.18
17 10 0.36
ACGTcount: A:0.17, C:0.04, G:0.00, T:0.79
Consensus pattern (16 bp):
TTATTTATTTTCTTTA
Found at i:22374900 original size:30 final size:30
Alignment explanation
Indices: 22374862--22374927 Score: 80
Period size: 29 Copynumber: 2.2 Consensus size: 30
22374852 ATCAACAATG
* * * *
22374862 GATGAAAAATGAGAAAAGAA-AAAAAAGAT
1 GATGAAAAAAGAAAAAAAAAGAAAAAAAAT
22374891 GATGAAAAAAGAAAAAAAAAGAAAAAAAAT
1 GATGAAAAAAGAAAAAAAAAGAAAAAAAAT
*
22374921 GAGGAAA
1 GATGAAA
22374928 TGAAAAAAGG
Statistics
Matches: 31, Mismatches: 5, Indels: 1
0.84 0.14 0.03
Matches are distributed among these distances:
29 17 0.55
30 14 0.45
ACGTcount: A:0.73, C:0.00, G:0.20, T:0.08
Consensus pattern (30 bp):
GATGAAAAAAGAAAAAAAAAGAAAAAAAAT
Found at i:22374905 original size:19 final size:18
Alignment explanation
Indices: 22374866--22374910 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 18
22374856 ACAATGGATG
22374866 AAAAATGAGAAAAGAAAA
1 AAAAATGAGAAAAGAAAA
22374884 AAAAGATGATGAAAAAAGAAAA
1 AAAA-ATGA-G--AAAAGAAAA
22374906 AAAAA
1 AAAAA
22374911 GAAAAAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
18 4 0.17
19 4 0.17
20 1 0.04
21 1 0.04
22 13 0.57
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.07
Consensus pattern (18 bp):
AAAAATGAGAAAAGAAAA
Found at i:22376252 original size:83 final size:85
Alignment explanation
Indices: 22376145--22376312 Score: 261
Period size: 83 Copynumber: 2.0 Consensus size: 85
22376135 GTCAAGGAAA
* *
22376145 AATTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACT-TTT-TCAAAGTCGT
1 AATTTACTTTTCAAAAGTCATGGTGCCTCTATTTAGAGGAGCAATTTA-TGTTTCTCAAAGTCGT
*
22376208 GGTGCCTCTGTTTAGAGGAGC
65 GGAGCCTCTGTTTAGAGGAGC
* *
22376229 AATTTA-TTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATGTTTCTCAAAGTCGTT
1 AATTTACTTTTCAAAAGTCATGGTGCCTCTATTTAGAGGAGCAATTTATGTTTCTCAAAGTCGTG
22376293 GAGCCTCTGTTTAGAGGAGC
66 GAGCCTCTGTTTAGAGGAGC
22376313 TTTGGTAAAA
Statistics
Matches: 77, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
82 1 0.01
83 41 0.53
84 35 0.45
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.37
Consensus pattern (85 bp):
AATTTACTTTTCAAAAGTCATGGTGCCTCTATTTAGAGGAGCAATTTATGTTTCTCAAAGTCGTG
GAGCCTCTGTTTAGAGGAGC
Found at i:22376257 original size:41 final size:42
Alignment explanation
Indices: 22376145--22376312 Score: 250
Period size: 42 Copynumber: 4.0 Consensus size: 42
22376135 GTCAAGGAAA
*
22376145 AATTTACTTTTCCAAAGTCGTGGTGCCTCTATTTAGAGGAGC
1 AATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
*
22376187 AATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
1 AATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
* *
22376229 AATTTA-TTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGC
1 AATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
* *
22376270 AATTTA-TGTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGC
1 AATTTACT-TTTC-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
22376313 TTTGGTAAAA
Statistics
Matches: 115, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
41 39 0.34
42 50 0.43
43 26 0.23
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.37
Consensus pattern (42 bp):
AATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
Found at i:22376336 original size:8 final size:8
Alignment explanation
Indices: 22376319--22376381 Score: 74
Period size: 8 Copynumber: 7.6 Consensus size: 8
22376309 GAGCTTTGGT
22376319 AAAAAA-A
1 AAAAAACA
22376326 AAAAAACA
1 AAAAAACA
22376334 AAAAAACA
1 AAAAAACA
*
22376342 AAAATACA
1 AAAAAACA
*
22376350 AAAAGACAAA
1 AAAA-A-ACA
22376360 AAAAAACA
1 AAAAAACA
22376368 CAAAAAACA
1 -AAAAAACA
22376377 AAAAA
1 AAAAA
22376382 TGACAATGTT
Statistics
Matches: 48, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
7 6 0.12
8 27 0.56
9 9 0.19
10 6 0.12
ACGTcount: A:0.86, C:0.11, G:0.02, T:0.02
Consensus pattern (8 bp):
AAAAAACA
Found at i:22376614 original size:27 final size:27
Alignment explanation
Indices: 22376584--22376635 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
22376574 TTTTCTTTTG
*
22376584 TATTTTATGTAT-TTTATTATTTATTAT
1 TATTATATGTATATTT-TTATTTATTAT
22376611 TATTATATGTATATTTTTATTTATT
1 TATTATATGTATATTTTTATTTATT
22376636 TTTTTTCTTG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (27 bp):
TATTATATGTATATTTTTATTTATTAT
Found at i:22376673 original size:27 final size:27
Alignment explanation
Indices: 22376600--22376674 Score: 66
Period size: 27 Copynumber: 2.8 Consensus size: 27
22376590 ATGTATTTTA
*
22376600 TTATTTA-TTATTATTATATGT-ATATTT
1 TTATTTATTTA-TCTTAT-TGTAATATTT
* * *
22376627 TTATTTATTTTTTTTCTTGTAATATTT
1 TTATTTATTTATCTTATTGTAATATTT
22376654 TT-TTTGATTTATCTTATTGTA
1 TTATTT-ATTTATCTTATTGTA
22376675 TTATCTGTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
26 6 0.15
27 31 0.79
28 2 0.05
ACGTcount: A:0.23, C:0.03, G:0.05, T:0.69
Consensus pattern (27 bp):
TTATTTATTTATCTTATTGTAATATTT
Found at i:22377738 original size:17 final size:17
Alignment explanation
Indices: 22377718--22377776 Score: 68
Period size: 17 Copynumber: 3.4 Consensus size: 17
22377708 TTTATCTTTA
22377718 TTTTATTTTCATTT-TT
1 TTTTATTTTCATTTATT
22377734 GTTTTACTTTTC-TTTATTT
1 -TTTTA-TTTTCATTTA-TT
*
22377753 TTTTATTTTTATTTATT
1 TTTTATTTTCATTTATT
22377770 TTTTATT
1 TTTTATT
22377777 ATTCTGTTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
17 21 0.57
18 14 0.38
19 2 0.05
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTATTTTCATTTATT
Found at i:22377756 original size:18 final size:17
Alignment explanation
Indices: 22377718--22377773 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
22377708 TTTATCTTTA
*
22377718 TTTTATTTTCATTT-TTG
1 TTTTATTTTC-TTTATTT
22377735 TTTTACTTTTCTTTATTT
1 TTTTA-TTTTCTTTATTT
*
22377753 TTTTATTTTTATTTATTT
1 TTTTA-TTTTCTTTATTT
22377771 TTT
1 TTT
22377774 ATTATTCTGT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
17 8 0.24
18 26 0.76
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTATTTTCTTTATTT
Found at i:22377940 original size:47 final size:49
Alignment explanation
Indices: 22377817--22378065 Score: 158
Period size: 60 Copynumber: 4.8 Consensus size: 49
22377807 TTTCAGAAAA
* **
22377817 AAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAATAAGTTT
1 AAAATATTTTTAGGGAAAAGTTGAAAGTATC-ATTTTCC-TAAAAAAAATT
22377868 AAAAGTA--TTT----AAAAGTTGAAAGTATCA-TTTCC-AAAAAAAATT
1 AAAA-TATTTTTAGGGAAAAGTTGAAAGTATCATTTTCCTAAAAAAAATT
22377910 AAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT
1 AAAATATTTTTAGGGAAAAGTTGAAAGTATC-ATTTTCC-TAAAAA-AAA--TT
*
22377964 CAAAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
1 ---AAAATA---TTTTTAG-GGAAAAGTTGAAAGTATC-ATTTTCC-TAAAAA-AAA-TT
*
22378023 CCAAAAAATACTTTT-GGGAAAAAGTTGAAAGTATCCATTTTCC
1 ----AAAATATTTTTAGGG-AAAAGTTGAAAGTAT-CATTTTCC
22378066 CTACACAAGA
Statistics
Matches: 168, Mismatches: 6, Indels: 42
0.78 0.03 0.19
Matches are distributed among these distances:
41 2 0.01
42 11 0.07
43 3 0.02
44 5 0.03
45 1 0.01
46 16 0.10
47 16 0.10
48 1 0.01
49 5 0.03
50 3 0.02
51 9 0.05
52 5 0.03
54 2 0.01
56 2 0.01
57 32 0.19
58 1 0.01
59 4 0.02
60 50 0.30
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.35
Consensus pattern (49 bp):
AAAATATTTTTAGGGAAAAGTTGAAAGTATCATTTTCCTAAAAAAAATT
Found at i:22377991 original size:60 final size:56
Alignment explanation
Indices: 22377917--22378065 Score: 208
Period size: 60 Copynumber: 2.6 Consensus size: 56
22377907 ATTAAAATAT
* *
22377917 TTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTCAAAAAAAAGGGT
1 TTTT-GGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAAA---C
*
22377977 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAATAC
1 TTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAAAC
*
22378034 TTTTGGGAAAAAGTTGAAAGTATCCATTTTCC
1 TTTTGGG-AAAAGTTGAAAGTATCAATTTTCC
22378066 CTACACAAGA
Statistics
Matches: 83, Mismatches: 4, Indels: 7
0.88 0.04 0.07
Matches are distributed among these distances:
56 2 0.02
57 28 0.34
59 1 0.01
60 52 0.63
ACGTcount: A:0.42, C:0.09, G:0.14, T:0.34
Consensus pattern (56 bp):
TTTTGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCCAAAAAAAAC
Found at i:22379865 original size:26 final size:26
Alignment explanation
Indices: 22379836--22379888 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22379826 GTTGACTTAG
22379836 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
22379862 GCATACGGAGTTCATTCCCAATGTAA
1 GCATACGGAGTTCATTCCCAATCTAA
22379888 G
1 G
22379889 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:22380760 original size:26 final size:26
Alignment explanation
Indices: 22380731--22380783 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22380721 GGTGACTTAG
* *
22380731 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
*
22380757 GCATACAGAGTTGATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
22380783 G
1 G
22380784 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:22381616 original size:26 final size:26
Alignment explanation
Indices: 22381587--22381639 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
22381577 GTTGACTTAG
22381587 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22381613 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
22381639 G
1 G
22381640 ATCGGATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:22382522 original size:26 final size:26
Alignment explanation
Indices: 22382486--22382538 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
22382476 GTTGACTTAG
22382486 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
22382512 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
22382538 G
1 G
22382539 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:22383022 original size:27 final size:27
Alignment explanation
Indices: 22382964--22383022 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
22382954 ACTTCTTCCG
* **
22382964 AAAAAATTTTAAAAAATCTTGAACCGT
1 AAAAAATTTTAAAAAATCGTGAACAAT
*
22382991 AAAAAGTTTT-AAAAATCGTGAACAAT
1 AAAAAATTTTAAAAAATCGTGAACAAT
*
22383017 AGAAAA
1 AAAAAA
22383023 CGAGTCATCT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
26 17 0.65
27 9 0.35
ACGTcount: A:0.56, C:0.08, G:0.10, T:0.25
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCGTGAACAAT
Found at i:22383025 original size:901 final size:895
Alignment explanation
Indices: 22380853--22384577 Score: 4613
Period size: 901 Copynumber: 4.2 Consensus size: 895
22380843 CGATCCCCGA
* * * *
22380853 CATTGGGGTTCTGGCGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATATGTGATGGGTGCTG
1 CATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
*
22380918 GTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
* * * * *
22380983 AGCATTTGAAATTTTACATGTTTGCAAGGCCAGTAGCCCTTAAAGTGTTTGAAATGGGGACACTT
131 AGCATTTGAGATTTTACAGGTTTGC--TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * * *
22381048 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGACTTGTTTTGTGCATGCTAA
194 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
22381113 AAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAAATCCTTTCGAAAAAATTTTAAAAA
259 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
22381178 ATCTCAAACCGTAAAAAGTTTAAAAAATCATGAAAAATAGAAAACAAGTCATCTCGCCATGAAAC
324 ATCTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* * * *
22381243 TTCACGTGAAGACTTATGGGACCATTGTAGGAATTTACAAGCCATAAAAATGGCATTGACACGCA
389 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCA
* * * *
22381308 GAAATATGAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACCGCTTACGCATCCTGTCT
454 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * * * *
22381373 CTTTGGACGGCGTAGTGCCCGCCCGCCCACCCGCTCATTTCGTCAGTTGGCTTAGGCGTATGGAG
519 CTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
* * ** * * * *
22381438 TTCATTCCCAGCCTAAGATCAAACCAGACCGAGGGTTGTGGCAGTAGGATCGACAGCACACA-AT
584 TTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACCCAGA-
* * *
22381502 GGGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCGTCTGGCCGGCTGAGCGCTCGCACGGT
648 -GGGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
*
22381567 CATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
712 CATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC
* ** * *
22381632 AGTCTAAGATCGGATCGGACTAAGGTTGCGGTAGCACATGCGGTGCTGGGGCATGTGCTGGTGCC
777 AGTCTAAGATCGGATCAGACCGAGGTTGC-GTAGCACATGCGG-GCTCGAGCATGTGCTGGTG-C
* * * * * ** * **
22381697 ACATATTTCTTCGTCGGGGTACCATCGCCGGAGCATTACCGTAGAACCTGACCGGTG
839 GCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGCAG
* * * * * *
22381754 ATATTAGGGTTCCGACGATTGGTGGGGCCGGAGGGGGTGTGCGCACATG-T-TGCTTGATGGGTG
1 -CATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGC--GATGGGTG
* * *
22381817 CTGGAACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACTCCCCCTTA
63 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
22381882 AAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGTACATT
128 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
22381947 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTTTGTGCATGCTA
193 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
22382012 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACCCCTTCCGAAAAAATTTTAAAA
258 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * * * *
22382077 AATAC-CAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTTTTACCATGAA
323 AAT-CTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAA
* *
22382141 ACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
387 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG
* * * *
22382206 GAGAAATATGAAGATGTTCCTAAACTCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGT
452 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * ** * *
22382271 CTCTCTGGCCGGCGTAGTGCCCGCCCACTCGTCCGCTCGTTTCGTCGGTTTGCTAAGGCATACGG
517 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* * * **
22382336 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGGGGGTTATGGTAGCAGGATCAGCAGCACGTAG
582 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACCCAG
* * *
22382401 AGTGGGACCCGATCGATCCTCGACTTGCGCATCCCGCCCCTC-GGCCGGCTGAGCGCCCGCACAC
647 AG-GGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
22382465 TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCC
711 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * *
22382530 TAGTCTAAGATCGGACCAGACCGAGGATTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG
776 CAGTCTAAGATCGGATCAGACCGAGG-TTGC-GTAGCACATGC-GGGCTCGAGCATGTGCTGGTG
* *
22382595 CTGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGCCGGAGAACCTGACCGCCCG
838 C-GCATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG-CAG
* * * *
22382655 GATTGGGGTTCCGATGATCGGAGGGGGTCGGGGGGGGTGTGCGCACAGGATGTGCGATGGCTGCT
1 CATTGGGGTTCCGACGATCGG-GGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
* * *
22382720 GGTACTTGGCCCTTATATTGGCTCCATATCCCTCATCAAACCTCGAGAACCCACACCCCCTTAAA
65 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
* * * *
22382785 GAGCATTTGAGACTTTATAGGTTTGCTGCTAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTT
130 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
22382850 TTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAAA
195 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
* *
22382915 AAAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAA
260 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
** * * *
22382980 TCTTGAACCGTAAAAAGTTTTAAAAATCGTGAACAATAGAAAACGAGTCATCTTGCCTTGAAACT
325 TCTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACT
* * *
22383045 TCACGTGAAGGCTTAAGGGACCATTGTATGAATCTACAAGCCATAAAAATGGCATTGGCATGTAG
390 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* *
22383110 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCGACGGCTTGCGCATCCCGTCTC
455 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* * * * *
22383175 TCTGGCCGACGTAGTGCCCGTCCGCCCGCCTGCTCGTTTCGTCGGTTGGTTTAGGCATACGGAGT
520 TCTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * *
22383240 TCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTACGGTAGAAAGATCGGCAGCACCCAGAGG
585 TCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACCCAGAGG
* * * ** * * * *
22383305 GCGAGCCGACCGACCCCCGACTTGCTCATCCCGCCCCTCTAACCGGTTGAGCGCCCGCATGCCCG
650 G-GACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCA
* * ** *
22383370 TGTCATGGGTTAACTTAGGCATACGGAGTTCATTTTCAGTCTAAGCATACGAAGTTCATTCCCAG
714 TTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
*
22383435 TCT-A-A---GATC-G---GA---T-CG--G---A------C-CGAG--GGTG-T-GT-CGCATT
779 TCTAAGATCGGATCAGACCGAGGTTGCGTAGCACATGCGGGCTCGAGCATGTGCTGGTGCGCATT
** * **
22383470 TTTCTTCCCCGGGGCAGCATTATCGGAGCATCGCCGGAGAACCTGACCGACAG
844 TTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCG-CAG
* * **
22383523 CATTGGGGTTCTGACGATC--GGAGG-CCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
1 CATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
22383585 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
66 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
*
22383650 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTT
131 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* * * * *
22383715 TTCAAATGGTCACAAAATCTTGGACACTTCGTGTTTTTAGCTTAATTTTTTTATGCATGCCAACA
196 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
* * * *
22383780 AAAATACAAGGATCATGTCTACCATGTTTGTGGCAAAAAC-CCTTCCGAAAAAATTTTAAAAAAT
261 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* *** * *
22383844 CTCGAACCGTAAAAAGTTTCGTAAATCATGAAAAATAGAAAACGATTCGTCTTGCCATGAAACTT
326 CTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
* * * *
22383909 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGAATTGGCACACTGA
391 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
* * *
22383974 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGTGCATCCTGTCTCT
456 AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* * * *
22384039 CTGGCCGGAGTAGTGCCCGCCCGCCTGCCCACCCGCTCGTTTTGTCGATTGGCTTAGGCGTACGG
521 CTGGCCGGCGTAGTGCCCG--C-CC-GCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGG
* *
22384104 AGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGGGTTACGGTAGCAGGATCGGCAGCACCCAG
582 AGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACCCAG
* * * * * * * *
22384169 AGAGGGACTCGACCGATCCCTGGCTTACGCATCCTGCACTTCTGGCCGGCTGAGCGCCTGCACGC
647 AG-GGGACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* *
22384234 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCCTAAGCAGTATGGAGTTCA-T
711 TCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT-CTAAGCA-TACGGAGTTCATT
* * * * * *
22384298 GCCAGTCTAAGGATTGGATCAGACCGAGGCTACGTAGCACATGTTGGGCTCGGGCATGTTGCTCA
774 CCCAGTCTAA-GATCGGATCAGACCGAGGTTGCGTAGCACATG-CGGGCTCGAGCATG-TG--C-
* * * * * *
22384363 TGGTGCCCGTATTTTTCTT--GC-GGGCACCATCGTCGGAGCATTTGTCGGACGACCCTGGACTG
833 TGGTG--CGCATTTTTCTTCATCGGGGCACCATCGTCGGAGCA-TCGCCGGA-GAACCT-GACCG
*
22384425 ACGAC
893 -C-AG
* * * * *
22384430 CATTGGGGTTTCGGCGATC-GGGGGGTCGGTGGGGGCTGCTGTGCCCATGCATGTGCGATGGGTT
1 CATTGGGGTTCCGACGATCGGGGGGGTCGG-GGGGGGTG-TGCGCACATG-ATGTGCGATGGG-T
* * *
22384494 GCTGGTACTTGAACGCTTATATTAGGCCCCCCTATCCCTCAGTTAAACCTCGAGAACTCACACTC
62 GCTGGTACTTG-GCCCTTATATT-GG-CCCCCTATCCCTCA-TCAAACCTCGAGAACTCACAC-C
22384559 GCCCTTTAAAGAGCATTTG
122 -CCC-TTAAAGAGCATTTG
22384578 GTTCTATCTA
Statistics
Matches: 2436, Mismatches: 310, Indels: 136
0.85 0.11 0.05
Matches are distributed among these distances:
863 215 0.09
864 249 0.10
865 4 0.00
866 2 0.00
867 175 0.07
868 83 0.03
869 11 0.00
870 2 0.00
871 2 0.00
872 3 0.00
874 8 0.00
875 2 0.00
878 2 0.00
881 1 0.00
882 3 0.00
884 1 0.00
885 1 0.00
887 2 0.00
888 1 0.00
889 1 0.00
893 2 0.00
894 1 0.00
895 3 0.00
896 1 0.00
897 4 0.00
898 2 0.00
899 104 0.04
900 565 0.23
901 597 0.25
902 215 0.09
903 21 0.01
904 7 0.00
905 5 0.00
906 17 0.01
907 17 0.01
908 4 0.00
909 1 0.00
910 7 0.00
911 8 0.00
912 12 0.00
913 12 0.00
914 9 0.00
915 2 0.00
916 14 0.01
917 20 0.01
918 1 0.00
919 3 0.00
920 14 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
CATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAA
AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
CTCAAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGA
AATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGGCGTAGTGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTT
CATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCAGGATCGGCAGCACCCAGAGGG
GACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATT
TCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
TAAGATCGGATCAGACCGAGGTTGCGTAGCACATGCGGGCTCGAGCATGTGCTGGTGCGCATTTT
TCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGCAG
Found at i:22383418 original size:26 final size:26
Alignment explanation
Indices: 22383388--22383440 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22383378 GTTAACTTAG
* **
22383388 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22383414 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22383440 G
1 G
22383441 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22385939 original size:26 final size:26
Alignment explanation
Indices: 22385909--22385961 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22385899 GTTAACTTAG
* **
22385909 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22385935 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22385961 G
1 G
22385962 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22386807 original size:26 final size:26
Alignment explanation
Indices: 22386777--22386829 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22386767 GTTGACTTAG
22386777 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTGCC-AGTCTAA
*
22386803 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
22386829 G
1 G
22386830 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:22399247 original size:26 final size:26
Alignment explanation
Indices: 22399211--22399263 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22399201 GTTGACTTAG
22399211 GCATACGGAGTTCATTCCC-AGTCTAA
1 GCATACGGAGTTCATTCCCGA-TCTAA
*
22399237 GCATATGGAGTTCATTCCCGATCTAA
1 GCATACGGAGTTCATTCCCGATCTAA
22399263 G
1 G
22399264 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCGATCTAA
Found at i:22399362 original size:12 final size:12
Alignment explanation
Indices: 22399345--22399378 Score: 61
Period size: 11 Copynumber: 2.9 Consensus size: 12
22399335 ACCAGGGCAC
22399345 CATCGTCGGAGG
1 CATCGTCGGAGG
22399357 CATCGTCGGA-G
1 CATCGTCGGAGG
22399368 CATCGTCGGAG
1 CATCGTCGGAG
22399379 AACCCGACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 11 0.52
12 10 0.48
ACGTcount: A:0.18, C:0.26, G:0.38, T:0.18
Consensus pattern (12 bp):
CATCGTCGGAGG
Found at i:22400725 original size:27 final size:27
Alignment explanation
Indices: 22400695--22400769 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
22400685 TTTTCTTTTG
*
22400695 TATTTTATGTAT-TTTATTATTTATTAT
1 TATTATATGTATATTT-TTATTTATTAT
22400722 TATTATATGTATATTTTTATTTATT-T
1 TATTATATGTATATTTTTATTTATTAT
22400748 T-TT-T-TGTAATATTTTT-TTTATT
1 TATTATATGT-ATATTTTTATTTATT
22400770 TATCTTATTG
Statistics
Matches: 45, Mismatches: 1, Indels: 8
0.83 0.02 0.15
Matches are distributed among these distances:
23 9 0.20
24 9 0.20
25 2 0.04
26 2 0.04
27 20 0.44
28 3 0.07
ACGTcount: A:0.24, C:0.00, G:0.04, T:0.72
Consensus pattern (27 bp):
TATTATATGTATATTTTTATTTATTAT
Found at i:22400745 original size:24 final size:24
Alignment explanation
Indices: 22400709--22400770 Score: 67
Period size: 23 Copynumber: 2.6 Consensus size: 24
22400699 TTATGTATTT
22400709 TATTATTTA-TTATTATTATATGT-A
1 TATT-TTTATTTATT-TTATATGTAA
* *
22400733 TATTTTTATTTATTTTTTTTGTAA
1 TATTTTTATTTATTTTATATGTAA
22400757 TATTTTT-TTTATTT
1 TATTTTTATTTATTT
22400771 ATCTTATTGT
Statistics
Matches: 34, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
23 17 0.50
24 17 0.50
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.73
Consensus pattern (24 bp):
TATTTTTATTTATTTTATATGTAA
Found at i:22401371 original size:20 final size:20
Alignment explanation
Indices: 22401338--22401375 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22401328 TCCGGTGAAC
*
22401338 TTCCGGTGAAAAAACCCAGA
1 TTCCGATGAAAAAACCCAGA
*
22401358 TTCCGATGACAAAACCCA
1 TTCCGATGAAAAAACCCA
22401376 AATCGGTGAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.39, C:0.29, G:0.16, T:0.16
Consensus pattern (20 bp):
TTCCGATGAAAAAACCCAGA
Found at i:22401837 original size:7 final size:8
Alignment explanation
Indices: 22401694--22401849 Score: 73
Period size: 8 Copynumber: 18.2 Consensus size: 8
22401684 CGCTCCAGGT
*
22401694 TTTTTTTT
1 TTTTTTTA
22401702 TTTTTTTAA
1 TTTTTTT-A
22401711 TTTTTTTTA
1 -TTTTTTTA
*
22401720 TTTTCATTTC
1 TTTT--TTTA
*
22401730 TTTGTTTA
1 TTTTTTTA
*
22401738 TTTGTTTA
1 TTTTTTTA
*
22401746 TTTATTTA
1 TTTTTTTA
**
22401754 TTTATTAGA
1 TTT-TTTTA
**
22401763 TTAGGTTTA
1 TT-TTTTTA
**
22401772 -TTTAATA
1 TTTTTTTA
22401779 TTCTTTTTA
1 TT-TTTTTA
22401788 TCTTTATTT-
1 T-TTT-TTTA
* *
22401797 TATTTTCA
1 TTTTTTTA
22401805 TTTTGTTTA
1 TTTT-TTTA
22401814 CTTTTCTTTA
1 -TTTT-TTTA
22401824 TTTTTTTA
1 TTTTTTTA
22401832 TTTTTTTA
1 TTTTTTTA
22401840 TTTTTTTA
1 TTTTTTTA
22401848 TT
1 TT
22401850 ATTCTGTTTT
Statistics
Matches: 112, Mismatches: 23, Indels: 26
0.70 0.14 0.16
Matches are distributed among these distances:
7 4 0.04
8 61 0.54
9 22 0.20
10 25 0.22
ACGTcount: A:0.16, C:0.04, G:0.04, T:0.76
Consensus pattern (8 bp):
TTTTTTTA
Found at i:22401859 original size:16 final size:16
Alignment explanation
Indices: 22401822--22401864 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
22401812 TACTTTTCTT
* *
22401822 TATTTTTTTATTTTTT
1 TATTTTTTTATTATTC
22401838 TATTTTTTTATTATTC
1 TATTTTTTTATTATTC
*
22401854 TGTTTTCTTTA
1 TATTTT-TTTA
22401865 AATAAAAATC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
16 19 0.83
17 4 0.17
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (16 bp):
TATTTTTTTATTATTC
Found at i:22401963 original size:57 final size:55
Alignment explanation
Indices: 22401886--22402094 Score: 287
Period size: 57 Copynumber: 3.7 Consensus size: 55
22401876 AAATTTCCAG
*
22401886 AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCCAA-TTTCCTTAAAAATAAGTTTA
1 AAAAAAATA-TTTTA-GGAAAAGTTGAAAGTAT-CAATTTTCCTTAAAAATAAATTTA
*
22401943 AAAAAAAGTATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT
1 AAAAAAA-TATTTT-AGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTA
* *
22402000 CAAAAAATATTTTAGGAAAAG-TGAAAGTATCAATTTTCCTTTAAAAATAAATTTC
1 AAAAAAATATTTTAGGAAAAGTTGAAAGTATCAATTTTCC-TTAAAAATAAATTTA
*
22402055 CAAAAAATACTTTTAGGAAAAAGTTGAAAGTATCAATTTT
1 AAAAAAATA-TTTTAGG-AAAAGTTGAAAGTATCAATTTT
22402095 TCCCTACATA
Statistics
Matches: 141, Mismatches: 4, Indels: 13
0.89 0.03 0.08
Matches are distributed among these distances:
54 18 0.13
55 31 0.22
56 16 0.11
57 57 0.40
58 19 0.13
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.34
Consensus pattern (55 bp):
AAAAAAATATTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTA
Found at i:22402060 original size:112 final size:114
Alignment explanation
Indices: 22401887--22402094 Score: 311
Period size: 112 Copynumber: 1.8 Consensus size: 114
22401877 AATTTCCAGA
*
22401887 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCCAATTTCCTTAAAAATAAGTTTAAAAAAAAGT
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCCAATTTCCTTAAAAATAAATTTAAAAAAAA-T
22401952 A-TTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
65 ACTTTT-AGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
**
22402001 AAAAAATA-TTTTA-GGAAAAG-TGAAAGTAT-CAATTTTCCTTTAAAAATAAATTTCCAAAAAA
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCCAA-TTTCC-TTAAAAATAAATTTAAAAAAAA
22402062 TACTTTTAGGAAAAAGTTGAAAGTATCAATTTT
64 TACTTTTAGGAAAAAGTTGAAAGTATCAATTTT
22402095 TCCCTACATA
Statistics
Matches: 87, Mismatches: 3, Indels: 10
0.87 0.03 0.10
Matches are distributed among these distances:
110 3 0.03
111 19 0.22
112 52 0.60
113 5 0.06
114 8 0.09
ACGTcount: A:0.47, C:0.07, G:0.12, T:0.34
Consensus pattern (114 bp):
AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCCAATTTCCTTAAAAATAAATTTAAAAAAAATA
CTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:22408044 original size:20 final size:19
Alignment explanation
Indices: 22408004--22408079 Score: 63
Period size: 20 Copynumber: 4.1 Consensus size: 19
22407994 ACAATGGATG
22408004 AAAAATGAGAAAAGAAAAA
1 AAAAATGAGAAAAGAAAAA
*
22408023 AAAAGATGATGAAAA-AAGAA
1 AAAA-ATGA-GAAAAGAAAAA
*
22408043 AAAAA--AG-AAA-TAAAA
1 AAAAATGAGAAAAGAAAAA
*
22408058 AGAAATGAGAAAATGAAAAA
1 AAAAATGAGAAAA-GAAAAA
22408078 AA
1 AA
22408080 GATATTCAAA
Statistics
Matches: 44, Mismatches: 6, Indels: 13
0.70 0.10 0.21
Matches are distributed among these distances:
15 10 0.23
16 1 0.02
17 3 0.07
18 3 0.07
19 5 0.11
20 17 0.39
21 5 0.11
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAAATGAGAAAAGAAAAA
Found at i:22408063 original size:10 final size:10
Alignment explanation
Indices: 22408035--22408063 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
22408025 AAGATGATGA
22408035 AAAAAGAAA-
1 AAAAAGAAAT
22408044 AAAAAGAAAT
1 AAAAAGAAAT
22408054 AAAAAGAAAT
1 AAAAAGAAAT
22408064 GAGAAAATGA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (10 bp):
AAAAAGAAAT
Found at i:22408080 original size:31 final size:31
Alignment explanation
Indices: 22408001--22408081 Score: 94
Period size: 32 Copynumber: 2.6 Consensus size: 31
22407991 TCAACAATGG
* *
22408001 ATGAAAAATG-AGAAAAGAAAAAAAAAGATG
1 ATGAAAAATGAAAAAAAGAAAAAAAAAGATA
* *
22408031 ATGAAAAAAGAAAAAAAAGAAATAAAAAGA-A
1 ATGAAAAATG-AAAAAAAGAAAAAAAAAGATA
22408062 ATGAGAAAATGAAAAAAAGA
1 ATGA-AAAATGAAAAAAAGA
22408082 TATTCAAATT
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
30 9 0.21
31 13 0.30
32 21 0.49
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (31 bp):
ATGAAAAATGAAAAAAAGAAAAAAAAAGATA
Found at i:22409393 original size:41 final size:41
Alignment explanation
Indices: 22409295--22409454 Score: 266
Period size: 42 Copynumber: 3.8 Consensus size: 41
22409285 GAAATTTACA
22409295 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT
1 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-T
22409337 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT
1 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT
*
22409378 TTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT
1 TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT
* *
22409419 GTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGC
1 -TTTC-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
22409455 TTTGGTAAAA
Statistics
Matches: 112, Mismatches: 4, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
41 41 0.37
42 44 0.39
43 27 0.24
ACGTcount: A:0.22, C:0.17, G:0.25, T:0.36
Consensus pattern (41 bp):
TTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAT
Found at i:22409467 original size:1 final size:1
Alignment explanation
Indices: 22409461--22409514 Score: 72
Period size: 1 Copynumber: 54.0 Consensus size: 1
22409451 GAGCTTTGGT
* * * *
22409461 AAAAAAAAAAAAAAAAAACAAAAACAAAAAACAAAAAAAAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
22409515 TGACAATGTT
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 45 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:22409496 original size:23 final size:23
Alignment explanation
Indices: 22409462--22409514 Score: 88
Period size: 24 Copynumber: 2.3 Consensus size: 23
22409452 AGCTTTGGTA
22409462 AAAAAAAAAAAAAAAAACAAAAAC
1 AAAAAAAAAAAAAAAAA-AAAAAC
*
22409486 AAAAAACAAAAAAAAAAAAAAAC
1 AAAAAAAAAAAAAAAAAAAAAAC
22409509 AAAAAA
1 AAAAAA
22409515 TGACAATGTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
23 12 0.43
24 16 0.57
ACGTcount: A:0.92, C:0.08, G:0.00, T:0.00
Consensus pattern (23 bp):
AAAAAAAAAAAAAAAAAAAAAAC
Found at i:22409744 original size:27 final size:27
Alignment explanation
Indices: 22409714--22409790 Score: 81
Period size: 27 Copynumber: 2.9 Consensus size: 27
22409704 CTTTCTTTTG
*
22409714 TATTTTATGTAT-TTTATTATTTATTAT
1 TATTATATGTATATTT-TTATTTATTAT
22409741 TATTATATGTATATTTTTATTTATT-T
1 TATTATATGTATATTTTTATTTATTAT
* *
22409767 TTTTCT-TGTAATATTTTT-TTTATT
1 TATTATATGT-ATATTTTTATTTATT
22409791 TATCTTATTG
Statistics
Matches: 45, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
25 9 0.20
26 13 0.29
27 20 0.44
28 3 0.07
ACGTcount: A:0.23, C:0.01, G:0.04, T:0.71
Consensus pattern (27 bp):
TATTATATGTATATTTTTATTTATTAT
Found at i:22409801 original size:26 final size:26
Alignment explanation
Indices: 22409730--22409802 Score: 78
Period size: 26 Copynumber: 2.8 Consensus size: 26
22409720 ATGTATTTTA
*
22409730 TTATTTATTATTATTATATGT-ATATTT
1 TTATTTATT-TTCTTAT-TGTAATATTT
* *
22409757 TTATTTATTTTTTTCTTGTAATATTT
1 TTATTTATTTTCTTATTGTAATATTT
22409783 TT-TTTATTTATCTTATTGTA
1 TTATTTATTT-TCTTATTGTA
22409803 TTATCTGTTA
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
25 10 0.25
26 21 0.52
27 9 0.22
ACGTcount: A:0.23, C:0.03, G:0.04, T:0.70
Consensus pattern (26 bp):
TTATTTATTTTCTTATTGTAATATTT
Found at i:22410394 original size:19 final size:19
Alignment explanation
Indices: 22410370--22410406 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
22410360 TCCGACGAAA
*
22410370 AAAACCCAGATTCGATGAC
1 AAAACCCAGAATCGATGAC
22410389 AAAACCCAGAATCGATGA
1 AAAACCCAGAATCGATGA
22410407 ATCTTCAACC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.46, C:0.24, G:0.16, T:0.14
Consensus pattern (19 bp):
AAAACCCAGAATCGATGAC
Found at i:22410833 original size:5 final size:5
Alignment explanation
Indices: 22410802--22410885 Score: 55
Period size: 5 Copynumber: 16.2 Consensus size: 5
22410792 TTAGATTAGG
* * * *
22410802 TTTAT TTAAT ATTCT TTTAT CTTTAT TTTAT TTTATT TTTGT TTTACT
1 TTTAT TTTAT TTTAT TTTAT -TTTAT TTTAT TTTA-T TTTAT TTTA-T
* *
22410850 TTTCT TTATTT TTTAT TTT-T ATTTA- TTTAT TTTAT T
1 TTTAT TT-TAT TTTAT TTTAT -TTTAT TTTAT TTTAT T
22410886 ATTCTGTTTT
Statistics
Matches: 61, Mismatches: 11, Indels: 14
0.71 0.13 0.16
Matches are distributed among these distances:
4 5 0.08
5 39 0.64
6 17 0.28
ACGTcount: A:0.18, C:0.05, G:0.01, T:0.76
Consensus pattern (5 bp):
TTTAT
Found at i:22410840 original size:21 final size:21
Alignment explanation
Indices: 22410770--22410885 Score: 69
Period size: 21 Copynumber: 5.5 Consensus size: 21
22410760 TGTTTATTTG
*
22410770 TTTATTTTTTTTTTA-TTTAT
1 TTTATTTTATTTTTATTTTAT
** ** *
22410790 TATTAGATTAGGTTTATTTAAT
1 T-TTATTTTATTTTTATTTTAT
* * *
22410812 ATTCTTTTATCTTTATTTTAT
1 TTTATTTTATTTTTATTTTAT
*
22410833 TTTATTTT-TGTTTTACTTTTCT
1 TTTATTTTAT-TTTTA-TTTTAT
*
22410855 TTATTTTTTATTTTTA-TTTA-
1 TT-TATTTTATTTTTATTTTAT
22410875 TTTATTTTATT
1 TTTATTTTATT
22410886 ATTCTGTTTT
Statistics
Matches: 70, Mismatches: 20, Indels: 13
0.68 0.19 0.13
Matches are distributed among these distances:
19 8 0.11
20 4 0.06
21 36 0.51
22 11 0.16
23 10 0.14
24 1 0.01
ACGTcount: A:0.19, C:0.03, G:0.03, T:0.74
Consensus pattern (21 bp):
TTTATTTTATTTTTATTTTAT
Found at i:22410851 original size:26 final size:26
Alignment explanation
Indices: 22410816--22410900 Score: 76
Period size: 26 Copynumber: 3.4 Consensus size: 26
22410806 TTTAATATTC
22410816 TTTTATCTTTATTTTATTTTATTTTTG
1 TTTTA-CTTTATTTTATTTTATTTTTG
*
22410843 TTTTACTTT-TCTTTA-TTT-TTTAT-
1 TTTTACTTTAT-TTTATTTTATTTTTG
22410866 TTTTA-TTTA-TTTATTTTATTATTCTG
1 TTTTACTTTATTTTATTTTATT-TT-TG
22410892 TTTT-CTTTA
1 TTTTACTTTA
22410901 AATAAAAAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
21 4 0.08
22 6 0.12
23 7 0.15
24 5 0.10
25 5 0.10
26 16 0.33
27 5 0.10
ACGTcount: A:0.15, C:0.06, G:0.02, T:0.76
Consensus pattern (26 bp):
TTTTACTTTATTTTATTTTATTTTTG
Found at i:22410863 original size:17 final size:17
Alignment explanation
Indices: 22410827--22410877 Score: 61
Period size: 17 Copynumber: 3.1 Consensus size: 17
22410817 TTTATCTTTA
22410827 TTTTA-TTTTATTT-TT
1 TTTTACTTTTATTTATT
*
22410842 GTTTTACTTTTCTTTATT
1 -TTTTACTTTTATTTATT
*
22410860 TTTTATTTTTATTTATT
1 TTTTACTTTTATTTATT
22410877 T
1 T
22410878 ATTTTATTAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
16 5 0.17
17 23 0.77
18 2 0.07
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTACTTTTATTTATT
Found at i:22410895 original size:13 final size:13
Alignment explanation
Indices: 22410823--22410885 Score: 53
Period size: 13 Copynumber: 4.8 Consensus size: 13
22410813 TTCTTTTATC
22410823 TTTATTTTATTTTA
1 TTTATTTTA-TTTA
*
22410837 TTT-TTGT-TTTA
1 TTTATTTTATTTA
22410848 CTTT-TCTTTATTT-
1 -TTTAT-TTTATTTA
22410861 TTTATTTTTATTTA
1 TTTA-TTTTATTTA
22410875 TTTATTTTATT
1 TTTATTTTATT
22410886 ATTCTGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 13
0.73 0.04 0.23
Matches are distributed among these distances:
11 4 0.10
12 7 0.17
13 19 0.46
14 11 0.27
ACGTcount: A:0.16, C:0.03, G:0.02, T:0.79
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:22410993 original size:59 final size:57
Alignment explanation
Indices: 22410922--22411140 Score: 298
Period size: 60 Copynumber: 3.8 Consensus size: 57
22410912 AAAATTTCAG
*
22410922 AAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAGTTT
1 AAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
22410979 AAAAAAAAAGTATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTT
1 -AAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAA-TTT
**
22411039 CAAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
1 -AAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
** * *
22411098 CCAAAAAATACTTTTG-GGAAAAAGTTGAAAGTATCCATTTTCC
1 AAAAAAAATATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCC
22411141 CTACACAAGA
Statistics
Matches: 147, Mismatches: 10, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
56 2 0.01
57 28 0.19
58 14 0.10
59 46 0.31
60 57 0.39
ACGTcount: A:0.46, C:0.08, G:0.13, T:0.33
Consensus pattern (57 bp):
AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
Found at i:22413574 original size:894 final size:892
Alignment explanation
Indices: 22412021--22413873 Score: 2569
Period size: 895 Copynumber: 2.1 Consensus size: 892
22412011 GTTGACTTAG
* * * * * * *
22412021 GCATACGAAGTTCATTCCCAGTCTAAGATCATATCGGACCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
22412086 CTCGAGCATGTGCTGGTGCCTTATTTTTCTTCGTCGGGGCAACATTGTCGGAGCATCGTCGGAGC
66 CTCGGGCATGTGCTAGTGCCACATTTTTC-T--TC---G---C--TGTCGCACCATCATCGGAGC
* *
22412151 ATCACCGGAAACTTGACCGGACGGCATTGGGTTTCGACAATCGGGAGGGCCGGGGGTGTGCGCAC
120 ATCACCGGAAACCTGACCGGACGGCATTGGGTTCCGACAATCGGGAGGGCCGGGGGTGTGCGCAC
*
22412216 AGGATGTGGGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAG
185 AGGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAG
*
22412281 AACTCACACCCCTTAAAGAGCATTTGAGATTTTACAGGTTGCTGCCAGTAGCCATTAAAGTGTCT
250 AACTCACACCCCCTAAAGAGCATTTGAGATTTTACAGGTTGCTGCCAGTAGCCATTAAAGTGTCT
* * *
22412346 GGAATAGGGACACTTTTTTTTAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATG
315 GAAATAGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATG
* * *
22412411 TTTTGTGCAAGTCAACAAAAATACAAGGATCACGTCTACCAAGTTTTGGACCAAACTCCTTCCGA
380 TTTTGTGCAAGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTTGGACCAAACTCCATCCGA
* * * * *
22412476 ACAAATTTTAAAAAATCCCGAACCATAAAAATTTTTAAAAATTGTGAAAAATAGAAAACGAGTCG
445 AAAAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATGGTGAAAAACAGAAAACGAGTCG
* *
22412541 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTCATAAAAAT
510 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAAT
* * *
22412606 GGTATTGCATGCAAAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCCATGCCTT
575 GGCATTGCATGCAAAAATATGAAGATGTGCATAAACCCACATACCACCCTATCGATCCACGCCTT
* * *
22412671 GCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGTCCGCTCA-TTTCGTCGGTTGGC
640 GCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCTCAGTTTCGTCGGTTGGC
* * * **
22412735 TTAGGCATACGGAGTTTATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGTAGTAGGATC
704 TTAGGCATACAGAGTTCATT-CCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAACAGGATC
* * * *
22412800 GACAAGCACGTAAAGGGAGACCCAACCGATCCCCAGCTTGCGC-ATCCCG-CCCTTTGG-CGGTT
768 GAC-AGCACGCAAAGGGAGACCCAACCGATCCCCAGCTTGCGCTATCCAGCCCCTCTGGCCGGCT
*
22412862 GAGCACCCGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCA-TCTAA
832 GAGCACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* **
22412922 GCATACGGAGTTCATTCCCAATGT-AGATTGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
22412986 CTCGGGCATGTGCTAGTGCCACATTTTTCTTCGCTGTCGCACCATCATCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTAGTGCCACATTTTTCTTCGCTGTCGCACCATCATCGGAGCATCACCGGA-A
* * *
22413051 ACCTGACCGG-CGGCATTGCGGTTCCGACGATC-GGAGGGGCCGGGGGGTGTGTGCACATGATGT
130 ACCTGACCGGACGGCATTG-GGTTCCGACAATCGGGA-GGGCC-GGGGGTGTGCGCACAGGATGT
22413114 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCAAGAACTCA
*
22413179 CACCCCCTAAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGTCATTAAAGTGTCTGAAA
256 CACCCCCTAAA-GAGCATTTGAGATTTTACAGG-TTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
22413244 TGGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATTTTGT
319 TAGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATGTT-T
* * *
22413308 TGTGCATGCCAACAAAAAGACAAGGATCATGTCTACCAAGTTTTGGGCCAAAACTCCATCCGAAA
383 TGTGCAAGCCAACAAAAAGACAAGGATCACGTCTACCAAGTTTTGGACC-AAACTCCATCCGAAA
** * *
22413373 AAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATGGTGAAAAACAGAAAATGAGTCGTC
447 AAATTTTAAAAAATCCCGAACCATAAAAAGTTTCAAAAATGGTGAAAAACAGAAAACGAGTCGTC
*
22413438 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTTTGAATTAACAAGCCATAAAAATGG
512 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGG
* * * * *
22413503 CATTGGCATGCAGAAATATGAAGGATGTG-AT-AA-CCACCTACCACTCTATCTATCCACGGCTT
577 CATT-GCATGCAAAAATATGAA-GATGTGCATAAACCCACATACCACCCTATCGATCCACGCCTT
*
22413565 GCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCTCAGTTTTGTCGGTTGGCT
640 GCACATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCTCAGTTTCGTCGGTTGGCT
* * * ** *
22413630 TAGGCATATAGAGTTCATTCCTGTTTAAGATCAGACCAGATGGAGGGTTGTGGCAACAGGATCGG
705 TAGGCATACAGAGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAACAGGATCGA
* * * *** *
22413695 CAGCATGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCTATCCAGCCCCTCTGGCCGGCTGAG
770 CAGCACGCAAAGGGAGACCCAACCGATCCCCAGCTTGCGCTATCCAGCCCCTCTGGCCGGCTGAG
* * * * *
22413760 CGCCCGCACGCTCGTTTCATTGGTTGACTTAGGCATACGGAGTTCATTCCTAGTTTAA
835 CACCCGCACGCTCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
22413818 GCATACGGAGTTGATTCCTAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCA
1 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCA
22413874 GGATCGGTAG
Statistics
Matches: 840, Mismatches: 95, Indels: 38
0.86 0.10 0.04
Matches are distributed among these distances:
889 37 0.04
890 26 0.03
891 52 0.06
892 72 0.09
893 125 0.15
894 180 0.21
895 191 0.23
896 41 0.05
897 36 0.04
899 1 0.00
900 58 0.07
901 21 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTAGTGCCACATTTTTCTTCGCTGTCGCACCATCATCGGAGCATCACCGGAAA
CCTGACCGGACGGCATTGGGTTCCGACAATCGGGAGGGCCGGGGGTGTGCGCACAGGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
CCTAAAGAGCATTTGAGATTTTACAGGTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGAC
ACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATGTTTTGTGCAAG
CCAACAAAAAGACAAGGATCACGTCTACCAAGTTTTGGACCAAACTCCATCCGAAAAAATTTTAA
AAAATCCCGAACCATAAAAAGTTTCAAAAATGGTGAAAAACAGAAAACGAGTCGTCTTGCCATGA
AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTAACAAGCCATAAAAATGGCATTGCATG
CAAAAATATGAAGATGTGCATAAACCCACATACCACCCTATCGATCCACGCCTTGCACATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCTCAGTTTCGTCGGTTGGCTTAGGCATACAG
AGTTCATTCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAACAGGATCGACAGCACGCAAA
GGGAGACCCAACCGATCCCCAGCTTGCGCTATCCAGCCCCTCTGGCCGGCTGAGCACCCGCACGC
TCGTTCCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:22413823 original size:26 final size:26
Alignment explanation
Indices: 22413792--22413844 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
22413782 GTTGACTTAG
*
22413792 GCATACGGAGTTCATTCCTAGTTTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
22413818 GCATACGGAGTTGATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
22413844 G
1 G
22413845 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:22415550 original size:25 final size:26
Alignment explanation
Indices: 22415516--22415567 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
22415506 GTTGACTTAG
22415516 GCATACAGAGTTCA-TTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
22415541 GCATACAGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTTCCAGTCTAA
22415567 G
1 G
22415568 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 14 0.54
26 12 0.46
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTTCCAGTCTAA
Found at i:22416386 original size:900 final size:897
Alignment explanation
Indices: 22414641--22417587 Score: 3828
Period size: 900 Copynumber: 3.3 Consensus size: 897
22414631 GTTGACTTAG
** *
22414641 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATC-GAACTAAGGGTTGCGGTAGCACATGC-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAG-ACCGAGGATTGCGGTAGCACATGCTGG
* * * * * ** *
22414704 CGCTGGGGCATGTGCTGGTGCCACATATTTCTTCGTCGGGGCACCATCGCCGGAGCATTACCGTA
65 -GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGA
** * * *
22414769 GAACCTGACCGGTGACATTAGGGTTCCGACGATCGGTGGGGCCGGAGGGGGTGTGCGCACATGTT
129 GAACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGAT
* * * *
22414834 GCGTGATGGGTGCTGGAACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
22414899 CACTCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
22414964 AATGGGTACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAATTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
22415029 TTGTGCATGCTAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAACCCCTTCCGAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGC-AAAAACCCTTCCGAA
* * * *
22415094 AAAATTTTAAAAAATAC-CAAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTTG
452 AAAATTTTAAAAAAT-CTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCG
* * * *
22415158 TTTTACCATGAAACATCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
22415223 GGCATTGGCATGGAGAAATATGAAGATGTTCCTAAACTCACCTACCACCCTATCGATCCACGGCT
581 GGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * *
22415288 TGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCACTCGCCCGCTCGTTTCGTCGGTTTGC
646 TGTGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
22415353 TAAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-CAGGGGTTATGGCAGCAGGAT
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGA-GGGTTACGGTAGCAGGAT
* * * * *
22415417 CAGCAGCACGTAGAGTGGGACCCGATCGATCCTTGACTTGCGCATCCCGCCCCTCTGGCCGGCTG
775 CGGCAGCACGCAGAGAGGGA-CCGATCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGTTG
* * *
22415482 AGCGCCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCAGTCTAA
839 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAA
* * * *
22415541 GCATACAGAGTTCATTTCCAGTCTAAGATCGGACCAGACCGAGGATTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTGCGGTAGCACATGCTGGG
* * ** *
22415606 CTCGAGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
22415671 ACCTGACCGCCCG-GATTGGGGTTCCGATGATCGGAGGGGGTCGGGGGGGTGTGCGCACAGGATG
131 ACCTGACCG-ACGACATTGGGGTTCCGACGATCGG-GGGGGCCGGGGGGGTGTGCGCACATGATG
* * *
22415735 TGCGATGGCTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAACCTCGAGAACCC
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * * *
22415800 ACACCCCCTTAAAGAGCATTTGAGACTTTATAGGTTTGCTGCTAGTAGCCGTTAAAGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
22415865 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACCCTTCGAGTTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
22415930 TGTGCAAGCCAAAAAAAATACAAGGATCACGTCTACCAAGTCTGGGGCCAAAACTTCTTCCGAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAAC-CCTTCCGAAA
* *
22415995 AAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCATC
453 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
*
22416060 TTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
22416125 CATTGGCACGTAGAAATATGAAGGTGTGCCTAAACCCACCTACCACCCTATCAATCGACGGCTTG
583 CATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
22416190 CGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGTCCGCCCGCCTGCTCGTTTCGTCGGTTGGCTT
648 TGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * *
22416255 AGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAAACTGAGGGTTACGGTAGAAAGATCGG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGG
* * * * **
22416320 TAGCACGCAGAG-GGCGAGCCGACCGACCCCCGACTTGCGCATCCCGCCCCTCTAACCGGTTGAG
778 CAGCACGCAGAGAGG-GA-CCGATCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAG
* * * * *
22416384 CGCCCGCATGCCCGTGTCATGGGTTAACTTAGGCATACGGAGTTCATTTTCAGTCTAA
841 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TTCCAGTCTAA
*
22416442 GCATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGA-C--------C----G---A-------
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTGCGGTAGCACATGCTGGG
* * * **
22416484 ----GG---GTG-T-GT--CGCATTTTTCTTCCCCGGGGTAGCATTATCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* ** * * *
22416538 ACCTGACCGATGGTATTGGGGTTCTGACGATC--GGAGGCCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
22416601 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
22416666 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGGAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
22416731 GAGGACACTTTTTTCAAATGGTCACAAAATCTTGGACACTTCGTGTTTTTAGCTTAATTTTTTTA
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
22416796 TGCATGCCAACAAAAATACAAGGATCATGTCTACCATGTTTGTGGCAAAAACCCTTCCGAAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACCCTTCCGAAAAAA
* *** *
22416861 TTTTAAAAAATCTCGAACCGCAAAAAGTTTCGTAAATCATGAAAAATAGAAAACGATTCGTCTTG
456 TTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
* *
22416926 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGAAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
22416991 TGGCACACT-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGGCTTGTG
586 TGGCAC-GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
* * *
22417055 CATCCTGTCTCTCTGGCCGGA-GTAGTGCCCGCCCGCCTGCCCACCCGCTCGTTTTGTCGATTGG
650 CATCCTGTCTCTCTGGCC-GACGTAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGG
* *
22417119 CTTAGGCGTACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGA-TCGAGGGTTACGATAGCAGG
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACT-GAGGGTTACGGTAGCAGG
* * * * * *
22417182 ATCGGCAGCACCCAGAGAGGGACTCGATCGATCCCTGGCTTACGCATCCTGCACTTCTGGCCGGT
773 ATCGGCAGCACGCAGAGAGGGAC-CGATCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGT
* *
22417247 TGAGCGCCTGCACGCTCATTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
837 TGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAA
* * * * *
22417309 GCATATGGAGTTCATTGCCAGTCTAAGATTGGATCAGACCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTGCGGTAGCACATGCTGGG
* * * * *
22417374 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTTGCCGAGGCACCATCGTCGGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
22417439 ACCTGACTGACGACATTGGGGTTTCGGCGATC-GGGGGGTCGGGGGGGTGTGTGCACATGATGTG
131 ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
** *
22417503 CGATGGGTGCTGGTACTTGAACCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
22417568 ACCCCCTTAAAGAGCATTTG
261 ACCCCCTTAAAGAGCATTTG
22417588 GTTCTTATCT
Statistics
Matches: 1768, Mismatches: 223, Indels: 110
0.84 0.11 0.05
Matches are distributed among these distances:
863 217 0.12
864 255 0.14
866 9 0.01
867 271 0.15
868 3 0.00
869 2 0.00
870 1 0.00
871 3 0.00
874 1 0.00
876 1 0.00
880 1 0.00
883 1 0.00
885 1 0.00
888 1 0.00
892 1 0.00
894 2 0.00
897 3 0.00
898 1 0.00
899 9 0.01
900 759 0.43
901 117 0.07
902 109 0.06
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGATTGCGGTAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACCCTTCCGAAAAAA
TTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGC
ATCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTACGGTAGCAGGATCGGCAG
CACGCAGAGAGGGACCGATCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCC
GCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAA
Found at i:22416446 original size:26 final size:26
Alignment explanation
Indices: 22416416--22416468 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
22416406 GTTAACTTAG
* **
22416416 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22416442 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
22416468 G
1 G
22416469 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:22417313 original size:26 final size:26
Alignment explanation
Indices: 22417283--22417335 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
22417273 GTTGACTTAG
22417283 GCATACGGAGTTCATT-CCTAGTCTAA
1 GCATACGGAGTTCATTGCC-AGTCTAA
*
22417309 GCATATGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTGCCAGTCTAA
22417335 G
1 G
22417336 ATTGGATCAG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTGCCAGTCTAA
Found at i:22427724 original size:2 final size:2
Alignment explanation
Indices: 22427719--22427754 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
22427709 ATATATATAT
*
22427719 AG AG AG AG AG AG AG AG AG AA AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
22427755 GATCAATCAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.47, T:0.00
Consensus pattern (2 bp):
AG
Found at i:22427904 original size:2 final size:2
Alignment explanation
Indices: 22427897--22427931 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
22427887 CCTACTTATT
22427897 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
22427932 CTAAAAGTCG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:22429096 original size:1 final size:1
Alignment explanation
Indices: 22429090--22429114 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
22429080 TAATCAGTAC
22429090 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
22429115 CCTACCCTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:22431356 original size:2 final size:2
Alignment explanation
Indices: 22431349--22431375 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
22431339 TATTTTATTT
22431349 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
22431376 GTCAAGGCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.