Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 140 of 195
Found at i:23571674 original size:34 final size:32
Alignment explanation
Indices: 23571648--23571778 Score: 91
Period size: 34 Copynumber: 3.9 Consensus size: 32
23571638 TAATCTCGAT
23571648 TATTTTTATTTTTTAACTCACATTTAATCCAG
1 TATTTTTATTTTTTAACTCACATTTAATCCAG
* * *
23571680 TCTTTTTATTTTTTGACTCACGATTCAATTCCAG
1 TATTTTTATTTTTTAACTCAC-ATTTAA-TCCAG
* ** * * *
23571714 TCTCGTTATTTTTTGACTCGCGATTCAATCTCAG
1 TATTTTTATTTTTTAACTCAC-ATTTAATC-CAG
* * * * *
23571748 TCTTATTATTCTTTGACTCACGGTTTAATCC
1 TATTTTTATTTTTTAACTCAC-ATTTAATCC
23571779 CAATCTCGTT
Statistics
Matches: 84, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
32 19 0.23
33 8 0.10
34 57 0.68
ACGTcount: A:0.21, C:0.21, G:0.09, T:0.49
Consensus pattern (32 bp):
TATTTTTATTTTTTAACTCACATTTAATCCAG
Found at i:23571757 original size:68 final size:67
Alignment explanation
Indices: 23571653--23571897 Score: 248
Period size: 68 Copynumber: 3.6 Consensus size: 67
23571643 TCGATTATTT
* * * *
23571653 TTATTTTTTAACTCACA-TTTAATC-CAGTCTTTTTATTTTTTGACTCACGATTCAATTCCAGTC
1 TTATTCTTTGACTCACAGTTCAATCTCAGTC-TTTTATTTTTTGACTCACGATTCAATCCCAGTC
23571716 TCG
65 TCG
* * * * * *
23571719 TTATTTTTTGACTCGC-GATTCAATCTCAGTCTTATTATTCTTTGACTCACGGTTTAATCCCAAT
1 TTATTCTTTGACTCACAG-TTCAATCTCAGTCTT-TTATTTTTTGACTCACGATTCAATCCCAGT
23571783 CTCG
64 CTCG
* * * *
23571787 TTATTCTCTGTCTCACAGTTTAATCTCAGTCTCTTTA-TTTTTGACTTAC-AGTTCAATCCCAGT
1 TTATTCTTTGACTCACAGTTCAATCTCAGTCT-TTTATTTTTTGACTCACGA-TTCAATCCCAGT
*
23571850 CTCA
64 CTCG
*
23571854 TTATTCTTTGACTCACATTTCAATCTCAGTCATTTCTATTTTTT
1 TTATTCTTTGACTCACAGTTCAATCTCAGTC-TTT-TATTTTTT
23571898 TTTTTTTACT
Statistics
Matches: 146, Mismatches: 23, Indels: 17
0.78 0.12 0.09
Matches are distributed among these distances:
66 14 0.10
67 60 0.41
68 65 0.45
69 7 0.05
ACGTcount: A:0.21, C:0.23, G:0.09, T:0.47
Consensus pattern (67 bp):
TTATTCTTTGACTCACAGTTCAATCTCAGTCTTTTATTTTTTGACTCACGATTCAATCCCAGTCT
CG
Found at i:23571791 original size:34 final size:34
Alignment explanation
Indices: 23571676--23571884 Score: 186
Period size: 34 Copynumber: 6.2 Consensus size: 34
23571666 CACATTTAAT
** * * *
23571676 CCAGTCTTTTTATTTTTTGACTCACGATTCAATT
1 CCAGTCTCATTATTCTTTGACTCACGGTTCAATC
* * * *
23571710 CCAGTCTCGTTATTTTTTGACTCGCGATTCAATC
1 CCAGTCTCATTATTCTTTGACTCACGGTTCAATC
* * *
23571744 TCAGTCTTATTATTCTTTGACTCACGGTTTAATC
1 CCAGTCTCATTATTCTTTGACTCACGGTTCAATC
* * * * * *
23571778 CCAATCTCGTTATTCTCTGTCTCACAGTTTAATC
1 CCAGTCTCATTATTCTTTGACTCACGGTTCAATC
* * * *
23571812 TCAGTCTCTTTATT-TTTGACTTACAGTTCAATC
1 CCAGTCTCATTATTCTTTGACTCACGGTTCAATC
**
23571845 CCAGTCTCATTATTCTTTGACTCACATTTCAATC
1 CCAGTCTCATTATTCTTTGACTCACGGTTCAATC
*
23571879 TCAGTC
1 CCAGTC
23571885 ATTTCTATTT
Statistics
Matches: 144, Mismatches: 30, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
33 27 0.19
34 117 0.81
ACGTcount: A:0.21, C:0.25, G:0.10, T:0.44
Consensus pattern (34 bp):
CCAGTCTCATTATTCTTTGACTCACGGTTCAATC
Found at i:23572178 original size:13 final size:13
Alignment explanation
Indices: 23572141--23572182 Score: 50
Period size: 13 Copynumber: 3.2 Consensus size: 13
23572131 AAATTATGTT
23572141 AAATTAATAATTAA
1 AAATTAA-AATTAA
* *
23572155 ATA-TAATATTAA
1 AAATTAAAATTAA
23572167 AAATTAAAATTAA
1 AAATTAAAATTAA
23572180 AAA
1 AAA
23572183 AATTTTATTA
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
12 7 0.30
13 14 0.61
14 2 0.09
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
AAATTAAAATTAA
Found at i:23573346 original size:3 final size:3
Alignment explanation
Indices: 23573340--23573377 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
23573330 ATAATAATAA
23573340 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
23573378 ATGATATTAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:23573621 original size:18 final size:17
Alignment explanation
Indices: 23573598--23573643 Score: 58
Period size: 18 Copynumber: 2.6 Consensus size: 17
23573588 AAAAAAAGGT
23573598 ATAAAAAGATAATAAATA
1 ATAAAAAGATAATAAA-A
23573616 ATAAAACA-ATAATAAAA
1 ATAAAA-AGATAATAAAA
*
23573633 ATAAATAGATA
1 ATAAAAAGATA
23573644 TTATTAATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 1 0.04
17 9 0.36
18 14 0.56
19 1 0.04
ACGTcount: A:0.72, C:0.02, G:0.04, T:0.22
Consensus pattern (17 bp):
ATAAAAAGATAATAAAA
Found at i:23573800 original size:14 final size:14
Alignment explanation
Indices: 23573781--23573890 Score: 62
Period size: 14 Copynumber: 7.7 Consensus size: 14
23573771 TGTTTTCTCC
23573781 AAACCCTAAAATCA
1 AAACCCTAAAATCA
* *
23573795 AAACCCT-AAACCTT
1 AAACCCTAAAATC-A
*
23573809 AAACTCTAAAATCA
1 AAACCCTAAAATCA
* *
23573823 AAATCCTAAACCTC-
1 AAACCCTAAA-ATCA
* * **
23573837 AAATCTTAAAATTG
1 AAACCCTAAAATCA
* * *
23573851 AAACCATAAACTCTCC
1 AAACCCTAAA--ATCA
23573867 AAACCCTAAAATCA
1 AAACCCTAAAATCA
23573881 AAACCCTAAA
1 AAACCCTAAA
23573891 CCCTTTAAAT
Statistics
Matches: 71, Mismatches: 19, Indels: 12
0.70 0.19 0.12
Matches are distributed among these distances:
13 5 0.07
14 50 0.70
15 6 0.08
16 10 0.14
ACGTcount: A:0.51, C:0.28, G:0.01, T:0.20
Consensus pattern (14 bp):
AAACCCTAAAATCA
Found at i:23573817 original size:28 final size:28
Alignment explanation
Indices: 23573780--23573892 Score: 136
Period size: 28 Copynumber: 4.0 Consensus size: 28
23573770 GTGTTTTCTC
23573780 CAAACCCTAAAATCAAAACCCTAAACCT
1 CAAACCCTAAAATCAAAACCCTAAACCT
* * *
23573808 TAAACTCTAAAATCAAAATCCTAAACCT
1 CAAACCCTAAAATCAAAACCCTAAACCT
* * ** *
23573836 CAAATCTTAAAATTGAAACCATAAACTCT
1 CAAACCCTAAAATCAAAACCCTAAAC-CT
23573865 CCAAACCCTAAAATCAAAACCCTAAACC
1 -CAAACCCTAAAATCAAAACCCTAAACC
23573893 CTTTAAATCC
Statistics
Matches: 67, Mismatches: 16, Indels: 3
0.78 0.19 0.03
Matches are distributed among these distances:
28 43 0.64
29 3 0.04
30 21 0.31
ACGTcount: A:0.50, C:0.30, G:0.01, T:0.19
Consensus pattern (28 bp):
CAAACCCTAAAATCAAAACCCTAAACCT
Found at i:23573959 original size:26 final size:25
Alignment explanation
Indices: 23573912--23573963 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 25
23573902 CTAAAATAAT
*
23573912 TTGAAACCCTAAATTCCTTAAAACCC
1 TTGAAACCCCAAATTCCTT-AAACCC
*
23573938 TTGAAACCCCAAGATTTC-TAAACCC
1 TTGAAACCCCAA-ATTCCTTAAACCC
23573963 T
1 T
23573964 AAACTTTTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
25 7 0.30
26 12 0.52
27 4 0.17
ACGTcount: A:0.37, C:0.31, G:0.06, T:0.27
Consensus pattern (25 bp):
TTGAAACCCCAAATTCCTTAAACCC
Found at i:23574033 original size:37 final size:39
Alignment explanation
Indices: 23573971--23574043 Score: 96
Period size: 37 Copynumber: 1.9 Consensus size: 39
23573961 CCTAAACTTT
**
23573971 TAAATCCTAAAATTGAAACCCTAAA-CC-TCAAACCCTC
1 TAAATCCTAAAATCAAAACCCTAAACCCTTCAAACCCTC
**
23574008 TAAATCCTAAAATCAAAACTTTAAACCCTTCAAACC
1 TAAATCCTAAAATCAAAACCCTAAACCCTTCAAACC
23574044 TTAAAAATTG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 21 0.70
38 2 0.07
39 7 0.23
ACGTcount: A:0.45, C:0.30, G:0.01, T:0.23
Consensus pattern (39 bp):
TAAATCCTAAAATCAAAACCCTAAACCCTTCAAACCCTC
Found at i:23574173 original size:15 final size:15
Alignment explanation
Indices: 23574140--23574189 Score: 55
Period size: 15 Copynumber: 3.3 Consensus size: 15
23574130 TCTAAAACCC
* *
23574140 TAAACCTTCAAATCA
1 TAAACCTTCAAAACT
23574155 TAAACCTTCAAAACT
1 TAAACCTTCAAAACT
**
23574170 TAAAATTTCAAAACCT
1 TAAACCTTCAAAA-CT
23574186 TAAA
1 TAAA
23574190 ATCCAAAACC
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
15 24 0.80
16 6 0.20
ACGTcount: A:0.50, C:0.22, G:0.00, T:0.28
Consensus pattern (15 bp):
TAAACCTTCAAAACT
Found at i:23574189 original size:16 final size:15
Alignment explanation
Indices: 23574161--23574233 Score: 62
Period size: 15 Copynumber: 5.0 Consensus size: 15
23574151 ATCATAAACC
23574161 TTCAAAA-CTTAAAA
1 TTCAAAACCTTAAAA
23574175 TTTCAAAACCTTAAAA
1 -TTCAAAACCTTAAAA
*
23574191 TCCAAAACC-TAAAA
1 TTCAAAACCTTAAAA
* * * **
23574205 CTCTACATTTTAAAA
1 TTCAAAACCTTAAAA
23574220 TTCAAAACC-TAAAA
1 TTCAAAACCTTAAAA
23574234 CCCTAAATTT
Statistics
Matches: 44, Mismatches: 12, Indels: 5
0.72 0.20 0.08
Matches are distributed among these distances:
14 13 0.30
15 24 0.55
16 7 0.16
ACGTcount: A:0.52, C:0.21, G:0.00, T:0.27
Consensus pattern (15 bp):
TTCAAAACCTTAAAA
Found at i:23574225 original size:29 final size:29
Alignment explanation
Indices: 23574185--23574243 Score: 91
Period size: 29 Copynumber: 2.0 Consensus size: 29
23574175 TTTCAAAACC
* *
23574185 TTAAAATCCAAAACCTAAAACTCTACATT
1 TTAAAATCCAAAACCTAAAACCCTAAATT
*
23574214 TTAAAATTCAAAACCTAAAACCCTAAATT
1 TTAAAATCCAAAACCTAAAACCCTAAATT
23574243 T
1 T
23574244 AGTACACAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.29
Consensus pattern (29 bp):
TTAAAATCCAAAACCTAAAACCCTAAATT
Found at i:23583855 original size:35 final size:35
Alignment explanation
Indices: 23583806--23583874 Score: 95
Period size: 35 Copynumber: 2.0 Consensus size: 35
23583796 AGATTATGTA
* *
23583806 TCAAATCAAGATCAATTTTTTTATTTGTTGGGATG
1 TCAAATCAAGATCAATTTCTTGATTTGTTGGGATG
*
23583841 TCAAATC-AGAATCAATTTCTTGATTTTTTGGGAT
1 TCAAATCAAG-ATCAATTTCTTGATTTGTTGGGAT
23583875 TTATATTTCT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
34 2 0.07
35 28 0.93
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45
Consensus pattern (35 bp):
TCAAATCAAGATCAATTTCTTGATTTGTTGGGATG
Found at i:23587285 original size:3 final size:3
Alignment explanation
Indices: 23587277--23587312 Score: 56
Period size: 3 Copynumber: 12.3 Consensus size: 3
23587267 TTGATGCCAC
*
23587277 TAT TAT TAT TAT TAT TAC TA- TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
23587313 TTCATTTTCA
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
2 2 0.06
3 29 0.94
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:23587389 original size:9 final size:9
Alignment explanation
Indices: 23587375--23587399 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
23587365 ATTATTATTT
23587375 TTTTTTTCA
1 TTTTTTTCA
23587384 TTTTTTTCA
1 TTTTTTTCA
23587393 TTTTTTT
1 TTTTTTT
23587400 TCTTCTTTCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.08, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:23587408 original size:17 final size:18
Alignment explanation
Indices: 23587374--23587423 Score: 57
Period size: 17 Copynumber: 2.7 Consensus size: 18
23587364 TATTATTATT
*
23587374 TTTTTTTTCATTTTTTTCA
1 TTTTTTTTCA-TTCTTTCA
*
23587393 TTTTTTTTC-TTCTTTCC
1 TTTTTTTTCATTCTTTCA
23587410 TTTTTTTTCGATTC
1 TTTTTTTTC-ATTC
23587424 GCACGTGAAC
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
17 15 0.56
19 12 0.44
ACGTcount: A:0.06, C:0.16, G:0.02, T:0.76
Consensus pattern (18 bp):
TTTTTTTTCATTCTTTCA
Found at i:23588128 original size:11 final size:11
Alignment explanation
Indices: 23588109--23588148 Score: 57
Period size: 10 Copynumber: 3.8 Consensus size: 11
23588099 CGATCATAAG
23588109 TTTTT-TTTAT
1 TTTTTATTTAT
23588119 TTTTTATTTAT
1 TTTTTATTTAT
23588130 TTTTTATTT-T
1 TTTTTATTTAT
*
23588140 ATTTTATTT
1 TTTTTATTT
23588149 TTAACCAATT
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
10 14 0.50
11 14 0.50
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (11 bp):
TTTTTATTTAT
Found at i:23588139 original size:17 final size:18
Alignment explanation
Indices: 23588111--23588150 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
23588101 ATCATAAGTT
23588111 TTTTTTATTTTT-TATTTA
1 TTTTTTATTTTTAT-TTTA
23588129 TTTTTTA-TTTTATTTTA
1 TTTTTTATTTTTATTTTA
23588146 TTTTT
1 TTTTT
23588151 AACCAATTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 13 0.62
18 8 0.38
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (18 bp):
TTTTTTATTTTTATTTTA
Found at i:23589107 original size:43 final size:44
Alignment explanation
Indices: 23589053--23589153 Score: 116
Period size: 43 Copynumber: 2.3 Consensus size: 44
23589043 TTTTACTTGC
* * *
23589053 TTAATTATTTATTGTT-TTATTTTCATTGTTTATACCTACTTAA
1 TTAATTATTTATTGTTGTTATTTTCATGGCTTATACATACTTAA
* * * * *
23589096 TTAATCATTTATT-TTGTTCTTTTCCTGGCTTATATATGCTTAA
1 TTAATTATTTATTGTTGTTATTTTCATGGCTTATACATACTTAA
23589139 TTAATTATTTATTGT
1 TTAATTATTTATTGT
23589154 ATATATACCT
Statistics
Matches: 47, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
42 2 0.04
43 44 0.94
44 1 0.02
ACGTcount: A:0.24, C:0.10, G:0.07, T:0.59
Consensus pattern (44 bp):
TTAATTATTTATTGTTGTTATTTTCATGGCTTATACATACTTAA
Found at i:23597391 original size:9 final size:9
Alignment explanation
Indices: 23597377--23597404 Score: 56
Period size: 9 Copynumber: 3.1 Consensus size: 9
23597367 ATTGCAGATG
23597377 CCTTGGCTA
1 CCTTGGCTA
23597386 CCTTGGCTA
1 CCTTGGCTA
23597395 CCTTGGCTA
1 CCTTGGCTA
23597404 C
1 C
23597405 AATAGTACAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 19 1.00
ACGTcount: A:0.11, C:0.36, G:0.21, T:0.32
Consensus pattern (9 bp):
CCTTGGCTA
Found at i:23598849 original size:60 final size:58
Alignment explanation
Indices: 23598762--23598918 Score: 210
Period size: 60 Copynumber: 2.7 Consensus size: 58
23598752 TGCTTAATCC
* ** *
23598762 AAAAAAAAAAAGAAAAAAAAGTTCAAGTTGAAAACCCAAAAAGGTGGTTTAAACCCAAAA
1 AAAAAAAAAAAGAAAGAAAAGTTCAAGTTGAAAACCCAAAAAGGCCGCTTAAACCC--AA
* * *
23598822 AAAAAAAAAAAGAAAGAAAAGCTCAAGTTGAAAACCCGAAAAGGCCGCTTAAACCCAG
1 AAAAAAAAAAAGAAAGAAAAGTTCAAGTTGAAAACCCAAAAAGGCCGCTTAAACCCAA
*
23598880 AAAAGAAAAAA-AAAG-AAAGTTCAAGTTGAAAACCCAAAA
1 AAAAAAAAAAAGAAAGAAAAGTTCAAGTTGAAAACCCAAAA
23598919 GAACGGCTTG
Statistics
Matches: 87, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
56 22 0.25
57 4 0.05
58 11 0.13
60 50 0.57
ACGTcount: A:0.61, C:0.14, G:0.15, T:0.11
Consensus pattern (58 bp):
AAAAAAAAAAAGAAAGAAAAGTTCAAGTTGAAAACCCAAAAAGGCCGCTTAAACCCAA
Found at i:23599848 original size:118 final size:117
Alignment explanation
Indices: 23599637--23599960 Score: 344
Period size: 118 Copynumber: 2.7 Consensus size: 117
23599627 TTTACTTACC
* * ** * *
23599637 TGATCTTGGTTCAGTCCAAATCATTTTATATGATTCATGGTTTTGTCTCGGTCATCTATTTTTGA
1 TGATCTTGGCTCAGTCCAAATCA-TTTATATAATTCATGGTTTCATCTTGGTCAT-TATTTTCGA
* * * *
23599702 CCTCGACTTAG-TCCTGGTCATTTTATTTTGACTCGTGATTTTATCTCGATCACT
64 CCTCGA-TTCGATCCTGGTCATTTCATTTTGACTCGTGATTTCACCTCGATCACT
* * * *
23599756 TGATCTTGACTCAATCCAGATCATTTCATATAATTCGTGGTTTCATCTTGGTCATTATTTTCGAC
1 TGATCTTGGCTCAGTCCAAATCATTT-ATATAATTCATGGTTTCATCTTGGTCATTATTTTCGAC
* * *
23599821 CTCGATTCGATCCTGGTCATTTCATTTTGACTTGTGGTTTCACCTCGGTCACT
65 CTCGATTCGATCCTGGTCATTTCATTTTGACTCGTGATTTCACCTCGATCACT
* * * * * * * *
23599874 TGATCTTGGCTCAGCCCATATCACTTTTTATCATTCATGGTTTCATCCTGATCATTTACTTTCAA
1 TGATCTTGGCTCAGTCCAAATCA-TTTATATAATTCATGGTTTCATCTTGGTCA-TTATTTTCGA
* *
23599939 CCTCGACTCGATCTTGGTCATT
64 CCTCGATTCGATCCTGGTCATT
23599961 CCATATGATT
Statistics
Matches: 171, Mismatches: 30, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
117 3 0.02
118 95 0.56
119 73 0.43
ACGTcount: A:0.19, C:0.23, G:0.15, T:0.44
Consensus pattern (117 bp):
TGATCTTGGCTCAGTCCAAATCATTTATATAATTCATGGTTTCATCTTGGTCATTATTTTCGACC
TCGATTCGATCCTGGTCATTTCATTTTGACTCGTGATTTCACCTCGATCACT
Found at i:23600290 original size:3 final size:3
Alignment explanation
Indices: 23600284--23600468 Score: 195
Period size: 3 Copynumber: 63.3 Consensus size: 3
23600274 TTGTTGTCAC
23600284 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T-T TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * ** * * *
23600330 TAT T-T TAT TTT TAT T-T T-T GTAT ATAA TAT TAT GGT CAC TAC TAT
1 TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TAT TAT TAT TAT TAT
* ** *
23600374 TAT TAT TAT TAT TA- TAT CAT CGT TAT TAT TAT TA- CAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
23600420 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23600468 T
1 T
23600469 TATACTTATA
Statistics
Matches: 155, Mismatches: 20, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
2 12 0.08
3 140 0.90
4 3 0.02
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:23600514 original size:5 final size:5
Alignment explanation
Indices: 23600480--23600539 Score: 52
Period size: 5 Copynumber: 12.0 Consensus size: 5
23600470 ATACTTATAT
* * * *
23600480 TTTTA TTTTA TTTTC ATTTA TTTTC TTTTC TTTTC -TTTC TTTTC TTCTTTC
1 TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC TTTTC -T-TTTC
23600531 TTTT- TTTTC
1 TTTTC TTTTC
23600540 CTAATCCACA
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
4 8 0.17
5 32 0.70
6 2 0.04
7 4 0.09
ACGTcount: A:0.07, C:0.15, G:0.00, T:0.78
Consensus pattern (5 bp):
TTTTC
Found at i:23600529 original size:8 final size:9
Alignment explanation
Indices: 23600490--23600539 Score: 50
Period size: 9 Copynumber: 5.6 Consensus size: 9
23600480 TTTTATTTTA
*
23600490 TTTTCATTTA
1 TTTTC-TTTC
23600500 TTTTCTTTTC
1 TTTTC-TTTC
23600510 TTTTCTTTC
1 TTTTCTTTC
23600519 TTTTC-TTC
1 TTTTCTTTC
*
23600527 -TTTCTTTT
1 TTTTCTTTC
23600535 TTTTC
1 TTTTC
23600540 CTAATCCACA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
7 4 0.11
8 5 0.14
9 13 0.37
10 13 0.37
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (9 bp):
TTTTCTTTC
Found at i:23601314 original size:14 final size:14
Alignment explanation
Indices: 23601291--23601327 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
23601281 CAGGTTTTTC
23601291 TTTTATTTTTT-AT
1 TTTTATTTTTTGAT
23601304 TTTTGATTTTTTGA-
1 TTTT-ATTTTTTGAT
23601318 TTTTATTTTT
1 TTTTATTTTT
23601328 AACCTATTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 10 0.45
14 11 0.50
15 1 0.05
ACGTcount: A:0.14, C:0.00, G:0.05, T:0.81
Consensus pattern (14 bp):
TTTTATTTTTTGAT
Found at i:23601650 original size:17 final size:18
Alignment explanation
Indices: 23601628--23601664 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
23601618 AATCATTTTT
23601628 TATAAA-AA-AAATAAAAA
1 TATAAATAACAAA-AAAAA
23601645 TATAAATAACAAAAAAAA
1 TATAAATAACAAAAAAAA
23601663 TA
1 TA
23601665 ATTTTTTTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 6 0.33
18 9 0.50
19 3 0.17
ACGTcount: A:0.78, C:0.03, G:0.00, T:0.19
Consensus pattern (18 bp):
TATAAATAACAAAAAAAA
Found at i:23615180 original size:21 final size:21
Alignment explanation
Indices: 23615151--23615290 Score: 99
Period size: 21 Copynumber: 6.6 Consensus size: 21
23615141 TTTAATTTTG
23615151 ATAACTTTTGATAACCTTTTAT
1 ATAA-TTTTGATAACCTTTTAT
*
23615173 ATAATTTTGATAA-CTTATGAT
1 ATAATTTTGATAACCTT-TTAT
* *
23615194 ATAATTTTGGTAACCATTGT-T
1 ATAATTTTGATAACC-TTTTAT
* **
23615215 ACAATTTTGATAAATTTTTAT
1 ATAATTTTGATAACCTTTTAT
* * *
23615236 AAAATTTTGGTAACCTCTTAAT
1 ATAATTTTGATAACCT-TTTAT
*
23615258 ATAATTTT-AGTAATCTTTTA-
1 ATAATTTTGA-TAACCTTTTAT
*
23615278 ATAACTTATGATA
1 ATAA-TTTTGATA
23615291 TATTTTTTGT
Statistics
Matches: 91, Mismatches: 19, Indels: 17
0.72 0.15 0.13
Matches are distributed among these distances:
20 10 0.11
21 57 0.63
22 22 0.24
23 2 0.02
ACGTcount: A:0.36, C:0.09, G:0.08, T:0.48
Consensus pattern (21 bp):
ATAATTTTGATAACCTTTTAT
Found at i:23615202 original size:42 final size:40
Alignment explanation
Indices: 23615115--23615265 Score: 123
Period size: 42 Copynumber: 3.7 Consensus size: 40
23615105 ATAATATAAG
*
23615115 TAAAATTTGATAA-CTTTTGATATAA-TTT--TAATTTTGA
1 TAAATTTTGATAACCTTTT-ATATAATTTTGATAATTTTGA
* *
23615152 TAACTTTTGATAACCTTTTATATAATTTTGATAACTTATGA
1 TAAATTTTGATAACCTTTTATATAATTTTGATAA-TTTTGA
* * * *
23615193 TATAATTTTGGTAACCATTGT-TACAATTTTGATAAATTTTTA
1 TA-AATTTTGATAACC-TTTTATATAATTTTGAT-AATTTTGA
* *
23615235 TAAAATTTTGGTAACCTCTTAATATAATTTT
1 T-AAATTTTGATAACCT-TTTATATAATTTT
23615266 AGTAATCTTT
Statistics
Matches: 91, Mismatches: 12, Indels: 16
0.76 0.10 0.13
Matches are distributed among these distances:
37 17 0.19
38 8 0.09
40 3 0.03
41 8 0.09
42 41 0.45
43 14 0.15
ACGTcount: A:0.35, C:0.07, G:0.08, T:0.50
Consensus pattern (40 bp):
TAAATTTTGATAACCTTTTATATAATTTTGATAATTTTGA
Found at i:23615240 original size:11 final size:10
Alignment explanation
Indices: 23615115--23615244 Score: 63
Period size: 10 Copynumber: 12.9 Consensus size: 10
23615105 ATAATATAAG
*
23615115 TAAAATTTGA
1 TAAATTTTGA
*
23615125 TAACTTTTGA
1 TAAATTTTGA
23615135 TATAA-TTT--
1 TA-AATTTTGA
23615143 T-AATTTTGA
1 TAAATTTTGA
*
23615152 TAACTTTTGA
1 TAAATTTTGA
*
23615162 TAACCTTTT-A
1 TAA-ATTTTGA
23615172 TATAATTTTGA
1 TA-AATTTTGA
* *
23615183 TAACTTATGA
1 TAAATTTTGA
*
23615193 TATAATTTTGG
1 TA-AATTTTGA
*** *
23615204 TAACCATTGT
1 TAAATTTTGA
23615214 TACAATTTTGA
1 TA-AATTTTGA
*
23615225 TAAATTTTTA
1 TAAATTTTGA
23615235 TAAAATTTTG
1 T-AAATTTTG
23615245 GTAACCTCTT
Statistics
Matches: 89, Mismatches: 20, Indels: 21
0.68 0.15 0.16
Matches are distributed among these distances:
6 2 0.02
7 3 0.03
8 1 0.01
9 1 0.01
10 52 0.58
11 30 0.34
ACGTcount: A:0.35, C:0.06, G:0.08, T:0.50
Consensus pattern (10 bp):
TAAATTTTGA
Found at i:23615644 original size:22 final size:22
Alignment explanation
Indices: 23615588--23615646 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
23615578 ATTATCAGTT
** *
23615588 ATTTGCTATTAAGCTATCAATG
1 ATTTGCTATTAATTTATAAATG
* *
23615610 ATATGCTACTAATTTATAAATG
1 ATTTGCTATTAATTTATAAATG
23615632 ATTTGCTATTAATTT
1 ATTTGCTATTAATTT
23615647 GTGAAGGATT
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (22 bp):
ATTTGCTATTAATTTATAAATG
Found at i:23615656 original size:22 final size:22
Alignment explanation
Indices: 23615613--23615658 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 22
23615603 ATCAATGATA
*
23615613 TGCTACTAATTTATAAATGATT
1 TGCTACTAATTTATAAAGGATT
* * *
23615635 TGCTATTAATTTGTGAAGGATT
1 TGCTACTAATTTATAAAGGATT
23615657 TG
1 TG
23615659 TCGTTAAGTT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (22 bp):
TGCTACTAATTTATAAAGGATT
Found at i:23615779 original size:22 final size:21
Alignment explanation
Indices: 23615707--23615793 Score: 57
Period size: 22 Copynumber: 4.0 Consensus size: 21
23615697 ATTTATCATT
* * *
23615707 AAGTTATTGATAATTTATTATA
1 AAGTTA-TGATGATTTACTAAA
* * **
23615729 AAGTTATAACAGATTTACTATT
1 AAGTTATGA-TGATTTACTAAA
*
23615751 AATTTATTGATGATTTACTAAA
1 AAGTTA-TGATGATTTACTAAA
*
23615773 AAGTTATGAATGATTAACTAA
1 AAGTTATG-ATGATTTACTAA
23615794 TTTATTATTA
Statistics
Matches: 50, Mismatches: 12, Indels: 6
0.74 0.18 0.09
Matches are distributed among these distances:
21 4 0.08
22 44 0.88
23 2 0.04
ACGTcount: A:0.43, C:0.05, G:0.10, T:0.43
Consensus pattern (21 bp):
AAGTTATGATGATTTACTAAA
Found at i:23615802 original size:44 final size:44
Alignment explanation
Indices: 23615704--23615792 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 44
23615694 GTAATTTATC
* * * *
23615704 ATTAAGTTATTGATAATTTATTATAAAGTTATAACAGATTTACT
1 ATTAATTTATTGATAATTTACTAAAAAGTTATAACAGATTAACT
* *
23615748 ATTAATTTATTGATGATTTACTAAAAAGTTATGAA-TGATTAACT
1 ATTAATTTATTGATAATTTACTAAAAAGTTAT-AACAGATTAACT
23615792 A
1 A
23615793 ATTTATTATT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 36 0.95
45 2 0.05
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (44 bp):
ATTAATTTATTGATAATTTACTAAAAAGTTATAACAGATTAACT
Found at i:23615842 original size:22 final size:22
Alignment explanation
Indices: 23615817--23615863 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
23615807 TATCATTAAC
23615817 TTAAAACTAAGTTATTAGTAAT
1 TTAAAACTAAGTTATTAGTAAT
* * * *
23615839 TTAATATTATGTTATTAGTGAT
1 TTAAAACTAAGTTATTAGTAAT
23615861 TTA
1 TTA
23615864 CTACGAAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.38, C:0.02, G:0.11, T:0.49
Consensus pattern (22 bp):
TTAAAACTAAGTTATTAGTAAT
Found at i:23615881 original size:85 final size:85
Alignment explanation
Indices: 23615792--23615982 Score: 242
Period size: 85 Copynumber: 2.2 Consensus size: 85
23615782 ATGATTAACT
* * * *
23615792 AATTTATTATTAAATTATCA-TTAACTTAAAACTAAGTTATTAGTAATTTAATATTATGTTATT-
1 AATTTATTACTAAATTATCACTT-ACTTAAAACTAAATTATTAATAATTTAATATTACGTTATTG
* *
23615855 AGTGATTTACTACGAAATTATC
65 ACT-ATTTACAACGAAATTATC
* * *
23615877 AATTTATTACTAAATTATCACTTATTTACAACTAAATTATTAATAATTTATTATTACGTTATTGA
1 AATTTATTACTAAATTATCACTTACTTAAAACTAAATTATTAATAATTTAATATTACGTTATTGA
* *
23615942 CTATTTACAACTAAGTTATC
66 CTATTTACAACGAAATTATC
23615962 AATTTTATTACTAAATTATCA
1 AA-TTTATTACTAAATTATCA
23615983 ATCATTTACT
Statistics
Matches: 92, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
85 70 0.76
86 22 0.24
ACGTcount: A:0.40, C:0.09, G:0.05, T:0.46
Consensus pattern (85 bp):
AATTTATTACTAAATTATCACTTACTTAAAACTAAATTATTAATAATTTAATATTACGTTATTGA
CTATTTACAACGAAATTATC
Found at i:23615903 original size:22 final size:22
Alignment explanation
Indices: 23615878--23615982 Score: 63
Period size: 22 Copynumber: 4.9 Consensus size: 22
23615868 GAAATTATCA
23615878 ATTTATTACTAAATTATCACTT
1 ATTTATTACTAAATTATCACTT
** * * *
23615900 ATTTACAACTAAATTATTAATA
1 ATTTATTACTAAATTATCACTT
* ** *
23615922 ATTTATTATTACGTTATTGAC-T
1 ATTTATTACTAAATTA-TCACTT
** * *
23615944 ATTTACAACTAAGTTATCA-AT
1 ATTTATTACTAAATTATCACTT
23615965 -TTTATTACTAAATTATCA
1 ATTTATTACTAAATTATCA
23615983 ATCATTTACT
Statistics
Matches: 60, Mismatches: 21, Indels: 6
0.69 0.24 0.07
Matches are distributed among these distances:
20 15 0.25
21 3 0.05
22 40 0.67
23 2 0.03
ACGTcount: A:0.39, C:0.11, G:0.03, T:0.47
Consensus pattern (22 bp):
ATTTATTACTAAATTATCACTT
Found at i:23615905 original size:19 final size:19
Alignment explanation
Indices: 23615859--23615896 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
23615849 GTTATTAGTG
* *
23615859 ATTTACTACGAAATTATCA
1 ATTTATTACTAAATTATCA
23615878 ATTTATTACTAAATTATCA
1 ATTTATTACTAAATTATCA
23615897 CTTATTTACA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.42, C:0.13, G:0.03, T:0.42
Consensus pattern (19 bp):
ATTTATTACTAAATTATCA
Found at i:23616066 original size:22 final size:23
Alignment explanation
Indices: 23616041--23616093 Score: 65
Period size: 22 Copynumber: 2.3 Consensus size: 23
23616031 TTTACTATTT
23616041 AATTTTTAATT-ATTTATCACAA
1 AATTTTTAATTGATTTATCACAA
* *
23616063 AATTATT-ATTGATTTATCACTA
1 AATTTTTAATTGATTTATCACAA
23616085 AATTATTTA
1 AATT-TTTA
23616094 TAATTTACCA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
21 3 0.12
22 20 0.80
23 2 0.08
ACGTcount: A:0.40, C:0.08, G:0.02, T:0.51
Consensus pattern (23 bp):
AATTTTTAATTGATTTATCACAA
Found at i:23616099 original size:22 final size:23
Alignment explanation
Indices: 23616052--23616113 Score: 67
Period size: 22 Copynumber: 2.8 Consensus size: 23
23616042 ATTTTTAATT
* *
23616052 ATTTATCACAAAATTA-TTATTG
1 ATTTATCACTAAATTATTTATTA
23616074 ATTTATCACTAAATTATTTA-TA
1 ATTTATCACTAAATTATTTATTA
*
23616096 ATTTACCA-TCAAATTATT
1 ATTTATCACT-AAATTATT
23616114 ACTATTTTAT
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
21 1 0.03
22 31 0.89
23 3 0.09
ACGTcount: A:0.40, C:0.11, G:0.02, T:0.47
Consensus pattern (23 bp):
ATTTATCACTAAATTATTTATTA
Found at i:23616142 original size:22 final size:23
Alignment explanation
Indices: 23616117--23616199 Score: 77
Period size: 22 Copynumber: 3.8 Consensus size: 23
23616107 AATTATTACT
23616117 ATTTTA-TATTAAATTATGCA-TG
1 ATTTTACTATTAAATTAT-CATTG
*
23616139 A-TTTACTATTAAGTTATCATTG
1 ATTTTACTATTAAATTATCATTG
* * *
23616161 A-TTAACTATTATATTATCAATG
1 ATTTTACTATTAAATTATCATTG
*
23616183 A-TTTACTATTAAGTTAT
1 ATTTTACTATTAAATTAT
23616200 ACTAATTTAC
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
21 6 0.12
22 45 0.88
ACGTcount: A:0.36, C:0.07, G:0.07, T:0.49
Consensus pattern (23 bp):
ATTTTACTATTAAATTATCATTG
Found at i:23616209 original size:21 final size:21
Alignment explanation
Indices: 23616094--23616218 Score: 74
Period size: 22 Copynumber: 5.8 Consensus size: 21
23616084 AAATTATTTA
* * *
23616094 TAATTTACCATCAAATTATTAC
1 TAATTTACTATTAAGTTA-TAC
* * *
23616116 TATTTTA-TATTAAATTATGC
1 TAATTTACTATTAAGTTATAC
* *
23616136 ATGATTTACTATTAAGTTATCAT
1 -TAATTTACTATTAAGTTAT-AC
* * *
23616159 TGATTAACTATTATA-TTATCAA
1 TAATTTACTATTA-AGTTAT-AC
*
23616181 TGATTTACTATTAAGTTATAC
1 TAATTTACTATTAAGTTATAC
*
23616202 TAATTTACTTTTAAGTT
1 TAATTTACTATTAAGTT
23616219 TGCAATTAAT
Statistics
Matches: 83, Mismatches: 15, Indels: 11
0.76 0.14 0.10
Matches are distributed among these distances:
20 2 0.02
21 30 0.36
22 50 0.60
23 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.06, T:0.49
Consensus pattern (21 bp):
TAATTTACTATTAAGTTATAC
Found at i:23616247 original size:14 final size:13
Alignment explanation
Indices: 23616223--23616254 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
23616213 TAAGTTTGCA
23616223 ATTAATAATTACT
1 ATTAATAATTACT
23616236 ATTAATTAATTACT
1 ATTAA-TAATTACT
23616250 ATTAA
1 ATTAA
23616255 ATTGAAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (13 bp):
ATTAATAATTACT
Found at i:23616305 original size:22 final size:21
Alignment explanation
Indices: 23616265--23616347 Score: 76
Period size: 22 Copynumber: 3.8 Consensus size: 21
23616255 ATTGAAACTA
* *
23616265 ATTTACTATTAAATTATCATT
1 ATTTATTATTAAGTTATCATT
* *
23616286 GATTTATTATTAAGTGATCAAT
1 -ATTTATTATTAAGTTATCATT
*
23616308 AGTTAATTATTAAGTTATCAGTT
1 A-TTTATTATTAAGTTATCA-TT
* *
23616331 ATTTTTTGTTAAGTTAT
1 ATTTATTATTAAGTTAT
23616348 TCTTAATTTA
Statistics
Matches: 49, Mismatches: 10, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
21 1 0.02
22 46 0.94
23 2 0.04
ACGTcount: A:0.34, C:0.05, G:0.10, T:0.52
Consensus pattern (21 bp):
ATTTATTATTAAGTTATCATT
Found at i:23616501 original size:11 final size:11
Alignment explanation
Indices: 23616485--23616519 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
23616475 ATTATCATTC
23616485 ATTATTAAGTT
1 ATTATTAAGTT
*
23616496 ATTATTAATTT
1 ATTATTAAGTT
*
23616507 ACTATTAAGTT
1 ATTATTAAGTT
23616518 AT
1 AT
23616520 CGATAATTAC
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.37, C:0.03, G:0.06, T:0.54
Consensus pattern (11 bp):
ATTATTAAGTT
Found at i:23616526 original size:22 final size:21
Alignment explanation
Indices: 23616487--23616540 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 21
23616477 TATCATTCAT
*
23616487 TATTAAGTTATTATTAATTTAC
1 TATTAAGTTATGATTAA-TTAC
23616509 TATTAAGTTATCGA-TAATTAC
1 TATTAAGTTAT-GATTAATTAC
* *
23616530 TACTAAATTAT
1 TATTAAGTTAT
23616541 ACTAATTTCA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
21 13 0.46
22 14 0.50
23 1 0.04
ACGTcount: A:0.39, C:0.07, G:0.06, T:0.48
Consensus pattern (21 bp):
TATTAAGTTATGATTAATTAC
Found at i:23619991 original size:25 final size:24
Alignment explanation
Indices: 23619963--23620050 Score: 56
Period size: 25 Copynumber: 3.6 Consensus size: 24
23619953 AAAAATTACA
23619963 AATAATATTTTAATCAATCACTTTT
1 AATAAT-TTTTAATCAATCACTTTT
* *
23619988 AAT-ATTTTTGAAATTAA--AATTTT
1 AATAATTTTT--AATCAATCACTTTT
* **
23620011 ATTAAGGGTTTAATCAATCACTTTT
1 AATAA-TTTTTAATCAATCACTTTT
*
23620036 AATACTTTTTTAATC
1 AATA-ATTTTTAATC
23620051 TAATTATAAA
Statistics
Matches: 45, Mismatches: 11, Indels: 14
0.64 0.16 0.20
Matches are distributed among these distances:
23 16 0.36
24 3 0.07
25 26 0.58
ACGTcount: A:0.38, C:0.09, G:0.05, T:0.49
Consensus pattern (24 bp):
AATAATTTTTAATCAATCACTTTT
Found at i:23620336 original size:2 final size:2
Alignment explanation
Indices: 23620323--23620359 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
23620313 TGGAGTTCAT
*
23620323 AC AC AC AT AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
23620360 TATATATATA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.46, G:0.00, T:0.03
Consensus pattern (2 bp):
AC
Found at i:23620364 original size:2 final size:2
Alignment explanation
Indices: 23620359--23620395 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
23620349 ACACACACAC
23620359 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
23620396 AGGTCAATAG
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:23625685 original size:15 final size:15
Alignment explanation
Indices: 23625665--23625695 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
23625655 TATAATTTGA
*
23625665 TTTGATTTTTTTATT
1 TTTGATTTTTTAATT
23625680 TTTGATTTTTTAATT
1 TTTGATTTTTTAATT
23625695 T
1 T
23625696 AAAATTTTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.00, G:0.06, T:0.77
Consensus pattern (15 bp):
TTTGATTTTTTAATT
Found at i:23626311 original size:21 final size:22
Alignment explanation
Indices: 23626287--23626333 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
23626277 GGAGAACTTT
23626287 TAAA-TGTACCTTTTT-TTTTTG
1 TAAACTGTA-CTTTTTATTTTTG
* *
23626308 TAAACTTTATTTTTTATTTTTG
1 TAAACTGTACTTTTTATTTTTG
23626330 TAAA
1 TAAA
23626334 AAAATTATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
21 9 0.41
22 13 0.59
ACGTcount: A:0.26, C:0.06, G:0.06, T:0.62
Consensus pattern (22 bp):
TAAACTGTACTTTTTATTTTTG
Found at i:23627736 original size:9 final size:10
Alignment explanation
Indices: 23627710--23627735 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
23627700 TTAAAAATAT
23627710 ATTTTTTAAA
1 ATTTTTTAAA
23627720 ATTTTTTAAA
1 ATTTTTTAAA
23627730 ATTTTT
1 ATTTTT
23627736 ATTTAAATGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
ATTTTTTAAA
Found at i:23632930 original size:72 final size:72
Alignment explanation
Indices: 23632813--23632956 Score: 243
Period size: 72 Copynumber: 2.0 Consensus size: 72
23632803 GTTACAAAAT
* **
23632813 TTGAGATTCAATGAATCTTTATGAGAATGATCGTAAAAAAAATAAAGGTTAATGTTAGAAAGAAT
1 TTGAGATTCAATGAATCTTTATGAGAATGATCATAAAAAAAATAAAGGTTAACATTAGAAAGAAT
23632878 GCACTAA
66 GCACTAA
* *
23632885 TTGAGATTCAATGAATCTTTATGAGAATGATCATCAAAAAAATAAAGGTTGACATTAGAAAGAAT
1 TTGAGATTCAATGAATCTTTATGAGAATGATCATAAAAAAAATAAAGGTTAACATTAGAAAGAAT
23632950 GCACTAA
66 GCACTAA
23632957 ATATTTATAA
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.46, C:0.08, G:0.17, T:0.28
Consensus pattern (72 bp):
TTGAGATTCAATGAATCTTTATGAGAATGATCATAAAAAAAATAAAGGTTAACATTAGAAAGAAT
GCACTAA
Found at i:23634902 original size:5 final size:5
Alignment explanation
Indices: 23634888--23634954 Score: 50
Period size: 5 Copynumber: 13.0 Consensus size: 5
23634878 AATTTGTTCA
*
23634888 CTTTT C-TTT CTTTT CTTTT -TTTT CTTTG CTTTT ACTTTT GCTTTAAT
1 CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT CTTTT -CTTTT -CTTT--T
*
23634935 TTTTT CTTTT GC-TTT CTTTT
1 CTTTT CTTTT -CTTTT CTTTT
23634955 ACAAGCTAGC
Statistics
Matches: 50, Mismatches: 5, Indels: 14
0.72 0.07 0.20
Matches are distributed among these distances:
4 9 0.18
5 27 0.54
6 10 0.20
7 3 0.06
8 1 0.02
ACGTcount: A:0.04, C:0.16, G:0.04, T:0.75
Consensus pattern (5 bp):
CTTTT
Found at i:23634990 original size:14 final size:15
Alignment explanation
Indices: 23634971--23635000 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
23634961 TAGCTTGACC
23634971 TTTTTTTC-TTTTTT
1 TTTTTTTCATTTTTT
23634985 TTTTTTTCATTTTTT
1 TTTTTTTCATTTTTT
23635000 T
1 T
23635001 CTAAGCTTTA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.03, C:0.07, G:0.00, T:0.90
Consensus pattern (15 bp):
TTTTTTTCATTTTTT
Found at i:23639066 original size:14 final size:14
Alignment explanation
Indices: 23639033--23639070 Score: 60
Period size: 13 Copynumber: 2.8 Consensus size: 14
23639023 AAAGCTAAAA
*
23639033 TTATTTTTTATTAT
1 TTATTTTTTCTTAT
23639047 TT-TTTTTTCTTAT
1 TTATTTTTTCTTAT
23639060 TTATTTTTTCT
1 TTATTTTTTCT
23639071 ATGAAATTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
13 12 0.55
14 10 0.45
ACGTcount: A:0.13, C:0.05, G:0.00, T:0.82
Consensus pattern (14 bp):
TTATTTTTTCTTAT
Found at i:23647407 original size:23 final size:23
Alignment explanation
Indices: 23647380--23647423 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
23647370 TAACACCTAT
23647380 TTTTTCATT-TTTTTTCATTTTCA
1 TTTTT-ATTATTTTTTCATTTTCA
*
23647403 TTTTTATTATTTTTTTATTTT
1 TTTTTATTATTTTTTCATTTT
23647424 GATTAACCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 3 0.16
23 16 0.84
ACGTcount: A:0.14, C:0.07, G:0.00, T:0.80
Consensus pattern (23 bp):
TTTTTATTATTTTTTCATTTTCA
Found at i:23647416 original size:16 final size:17
Alignment explanation
Indices: 23647380--23647416 Score: 51
Period size: 16 Copynumber: 2.3 Consensus size: 17
23647370 TAACACCTAT
*
23647380 TTTTTCATTTTTTTTCA
1 TTTTTCATTTTTATTCA
23647397 -TTTTCATTTTTATT-A
1 TTTTTCATTTTTATTCA
23647412 TTTTT
1 TTTTT
23647417 TTATTTTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
15 1 0.06
16 17 0.94
ACGTcount: A:0.14, C:0.08, G:0.00, T:0.78
Consensus pattern (17 bp):
TTTTTCATTTTTATTCA
Found at i:23647868 original size:16 final size:16
Alignment explanation
Indices: 23647847--23647884 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
23647837 GATTCGTAAA
23647847 ATTTCATATATGCAAG
1 ATTTCATATATGCAAG
*
23647863 ATTTCATATTTGCAAG
1 ATTTCATATATGCAAG
23647879 ATTTCA
1 ATTTCA
23647885 AGATCTGCAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (16 bp):
ATTTCATATATGCAAG
Found at i:23648029 original size:20 final size:20
Alignment explanation
Indices: 23648004--23648042 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23647994 CACATCCAAA
*
23648004 AGTTCAAAGCTTCTCATTCG
1 AGTTCAAAGCTTCACATTCG
*
23648024 AGTTCAAAGGTTCACATTC
1 AGTTCAAAGCTTCACATTC
23648043 AATGAATCTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.33
Consensus pattern (20 bp):
AGTTCAAAGCTTCACATTCG
Found at i:23648431 original size:21 final size:22
Alignment explanation
Indices: 23648313--23648441 Score: 127
Period size: 22 Copynumber: 5.8 Consensus size: 22
23648303 GTTTCCCATA
23648313 TCAAAGATTCTCATTTGAAAAC
1 TCAAAGATTCTCATTTGAAAAC
* *
23648335 TCAAAGTTTCTCATTTAAAAAC
1 TCAAAGATTCTCATTTGAAAAC
* *
23648357 TCAATGATTCTCATTTG-AATC
1 TCAAAGATTCTCATTTGAAAAC
* * **
23648378 TCAAATATTTTCATTTGGGAATTTC
1 TCAAAGATTCTCATTT--GAA-AAC
* *
23648403 TTAAAGATTCTCATTT-AAGAC
1 TCAAAGATTCTCATTTGAAAAC
23648424 TCAAAGATTCTCATTTGA
1 TCAAAGATTCTCATTTGA
23648442 GGATTCACAA
Statistics
Matches: 86, Mismatches: 16, Indels: 10
0.77 0.14 0.09
Matches are distributed among these distances:
21 32 0.37
22 37 0.43
23 1 0.01
24 1 0.01
25 15 0.17
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.40
Consensus pattern (22 bp):
TCAAAGATTCTCATTTGAAAAC
Found at i:23648688 original size:11 final size:11
Alignment explanation
Indices: 23648674--23648705 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
23648664 CTCCAAATTA
23648674 TAATGCAAATG
1 TAATGCAAATG
23648685 TAATGC--ATG
1 TAATGCAAATG
23648694 TAATGCAAATG
1 TAATGCAAATG
23648705 T
1 T
23648706 CCATGTCATG
Statistics
Matches: 19, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
9 9 0.47
11 10 0.53
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.31
Consensus pattern (11 bp):
TAATGCAAATG
Found at i:23654043 original size:62 final size:62
Alignment explanation
Indices: 23653924--23654043 Score: 154
Period size: 62 Copynumber: 1.9 Consensus size: 62
23653914 TCTTTTAAAA
** * * *
23653924 TTTCTAAATTTTTCACCATTTGGGCCTATTTAGAAATTTTCTTTATTTATTATTTTTTTGAG
1 TTTCTAAATTTTTCACCATTTGGGCAAATTTAGAAATTTTCTTTATTCATAAATTTTTTGAG
*
23653986 TTTCTAAATTTTTCACCATTTGGGTAAATTTAGAAACATTTTCTTT-TTCA-AAATTTTT
1 TTTCTAAATTTTTCACCATTTGGGCAAATTTAG-AA-ATTTTCTTTATTCATAAATTTTT
23654044 AAATTTTCCA
Statistics
Matches: 50, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
62 36 0.72
63 5 0.10
64 9 0.18
ACGTcount: A:0.26, C:0.12, G:0.08, T:0.54
Consensus pattern (62 bp):
TTTCTAAATTTTTCACCATTTGGGCAAATTTAGAAATTTTCTTTATTCATAAATTTTTTGAG
Found at i:23655199 original size:15 final size:16
Alignment explanation
Indices: 23655181--23655218 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
23655171 CAAAATCAAA
23655181 TATTTTT-GCATTTTT
1 TATTTTTAGCATTTTT
**
23655196 TATTTTTATTATTTTT
1 TATTTTTAGCATTTTT
23655212 TATTTTT
1 TATTTTT
23655219 TTTGTTAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
15 7 0.35
16 13 0.65
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.79
Consensus pattern (16 bp):
TATTTTTAGCATTTTT
Found at i:23658868 original size:31 final size:31
Alignment explanation
Indices: 23658823--23658885 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
23658813 AATTAAAATT
23658823 ATTTTTTTTATATATGCAAAGTTAGGAGGGA
1 ATTTTTTTTATATATGCAAAGTTAGGAGGGA
*
23658854 ATTTTTTGTT-TATATGCAAAGTTGGGAGGGA
1 ATTTTTT-TTATATATGCAAAGTTAGGAGGGA
23658885 A
1 A
23658886 AGCAATTAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 28 0.93
32 2 0.07
ACGTcount: A:0.30, C:0.03, G:0.25, T:0.41
Consensus pattern (31 bp):
ATTTTTTTTATATATGCAAAGTTAGGAGGGA
Found at i:23659012 original size:13 final size:13
Alignment explanation
Indices: 23658975--23659022 Score: 57
Period size: 12 Copynumber: 3.8 Consensus size: 13
23658965 AAAAATGAAT
23658975 TTATTTTTATGAG
1 TTATTTTTATGAG
*
23658988 AT-TTTTTA-GAG
1 TTATTTTTATGAG
23658999 TTATTTTTATGAG
1 TTATTTTTATGAG
23659012 -TATTTTGTATG
1 TTATTTT-TATG
23659023 TATTAACATG
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
11 4 0.13
12 18 0.60
13 8 0.27
ACGTcount: A:0.23, C:0.00, G:0.17, T:0.60
Consensus pattern (13 bp):
TTATTTTTATGAG
Found at i:23661040 original size:16 final size:18
Alignment explanation
Indices: 23661019--23661055 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
23661009 ATTATTATTT
23661019 TTTAAAGT-TT-ATATAA
1 TTTAAAGTATTAATATAA
*
23661035 TTTAAATTATTAATATAA
1 TTTAAAGTATTAATATAA
23661053 TTT
1 TTT
23661056 TTAAAAATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
16 7 0.39
17 2 0.11
18 9 0.50
ACGTcount: A:0.43, C:0.00, G:0.03, T:0.54
Consensus pattern (18 bp):
TTTAAAGTATTAATATAA
Found at i:23661481 original size:11 final size:11
Alignment explanation
Indices: 23661461--23661563 Score: 85
Period size: 11 Copynumber: 9.6 Consensus size: 11
23661451 AATAATATAA
23661461 TAATAT-TTAT
1 TAATATATTAT
23661471 TAATATATTAT
1 TAATATATTAT
*
23661482 TTAT-TATTA-
1 TAATATATTAT
23661491 TAATATTATTTAT
1 TAATA-TA-TTAT
*
23661504 TAATATGTTAT
1 TAATATATTAT
*
23661515 TAATATAATA-
1 TAATATATTAT
*
23661525 T-AT-TATTAA
1 TAATATATTAT
23661534 T-ATATTATTTAT
1 TAATA-TA-TTAT
23661546 TAATATATTAT
1 TAATATATTAT
23661557 TAATATA
1 TAATATA
23661564 ATAAAAATAT
Statistics
Matches: 76, Mismatches: 7, Indels: 19
0.75 0.07 0.19
Matches are distributed among these distances:
8 4 0.05
9 8 0.11
10 12 0.16
11 34 0.45
12 10 0.13
13 8 0.11
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (11 bp):
TAATATATTAT
Found at i:23661484 original size:15 final size:15
Alignment explanation
Indices: 23661460--23661590 Score: 122
Period size: 15 Copynumber: 8.4 Consensus size: 15
23661450 TAATAATATA
23661460 ATAATATTTATTAAT
1 ATAATATTTATTAAT
* *
23661475 ATATTATTTATTATT
1 ATAATATTTATTAAT
*
23661490 ATAATA-TTATTTAT
1 ATAATATTTATTAAT
23661504 -TAATATGTTATTAAT
1 ATAATAT-TTATTAAT
23661519 ATAATATATTATTAAT
1 ATAATAT-TTATTAAT
*
23661535 ATATTATTTATTAAT
1 ATAATATTTATTAAT
* *
23661550 ATATTATTAATATAAT
1 ATAATATTTAT-TAAT
*
23661566 AAAAATATTTTTTATTAAT
1 -ATAATA---TTTATTAAT
23661585 ATAATA
1 ATAATA
23661591 ATTGTAGTAT
Statistics
Matches: 95, Mismatches: 13, Indels: 13
0.79 0.11 0.11
Matches are distributed among these distances:
13 5 0.05
14 6 0.06
15 43 0.45
16 24 0.25
17 4 0.04
18 5 0.05
19 4 0.04
20 4 0.04
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.54
Consensus pattern (15 bp):
ATAATATTTATTAAT
Found at i:23661539 original size:42 final size:42
Alignment explanation
Indices: 23661461--23661566 Score: 153
Period size: 42 Copynumber: 2.5 Consensus size: 42
23661451 AATAATATAA
*
23661461 TAATATTTATTAATATATTATTTATTATTATAATATTATTTAT
1 TAATATTTATTAATATAATATTTATTA-TATAATATTATTTAT
23661504 TAATATGTTATTAATATAATATATTATTA-AT-ATATTATTTAT
1 TAATAT-TTATTAATATAATAT-TTATTATATAATATTATTTAT
23661546 TAATATATTATTAATATAATA
1 TAATAT-TTATTAATATAATA
23661567 AAAATATTTT
Statistics
Matches: 59, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
42 31 0.53
43 8 0.14
44 14 0.24
45 6 0.10
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (42 bp):
TAATATTTATTAATATAATATTTATTATATAATATTATTTAT
Found at i:23661557 original size:18 final size:18
Alignment explanation
Indices: 23661453--23661563 Score: 83
Period size: 18 Copynumber: 6.4 Consensus size: 18
23661443 TTGTTACTAA
* *
23661453 TAATATAATAATATTTAT
1 TAATATATTATTATTTAT
23661471 TAATATATTATT-TATTAT
1 TAATATATTATTAT-TTAT
23661489 T-ATA-A-TATTATTTAT
1 TAATATATTATTATTTAT
* *
23661504 TAATATGTTATTA-ATA-
1 TAATATATTATTATTTAT
*
23661520 TAATATATTATTAATATAT
1 TAATATATTATT-ATTTAT
* *
23661539 T-ATTTATTAATATATTAT
1 TAATATATTATTAT-TTAT
23661557 TAATATA
1 TAATATA
23661564 ATAAAAATAT
Statistics
Matches: 74, Mismatches: 9, Indels: 19
0.73 0.09 0.19
Matches are distributed among these distances:
15 9 0.12
16 16 0.22
17 9 0.12
18 35 0.47
19 5 0.07
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (18 bp):
TAATATATTATTATTTAT
Found at i:23665278 original size:14 final size:14
Alignment explanation
Indices: 23665240--23665306 Score: 52
Period size: 14 Copynumber: 4.9 Consensus size: 14
23665230 TTTTATATTT
23665240 TTATATATT-TTTT-
1 TTAT-TATTATTTTA
**
23665253 TTATTAAAATTTTA
1 TTATTATTATTTTA
23665267 TTATTATTA-TTTA
1 TTATTATTATTTTA
23665280 TCT-TTCATTATTTTA
1 T-TATT-ATTATTTTA
*
23665295 TTTTTATTATTT
1 TTATTATTATTT
23665307 AATAATTCTC
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
12 2 0.05
13 15 0.34
14 20 0.45
15 7 0.16
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (14 bp):
TTATTATTATTTTA
Found at i:23665433 original size:3 final size:3
Alignment explanation
Indices: 23665425--23665467 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
23665415 TTTTTAAAAC
23665425 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
23665468 CATCATCATC
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:23665557 original size:15 final size:16
Alignment explanation
Indices: 23665537--23665575 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
23665527 CATAAAAAAT
23665537 AAATTAAAGCATA-CA
1 AAATTAAAGCATATCA
* *
23665552 AAATTAAATCATATGA
1 AAATTAAAGCATATCA
23665568 AAATTAAA
1 AAATTAAA
23665576 ACAACAATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 12 0.57
16 9 0.43
ACGTcount: A:0.62, C:0.08, G:0.05, T:0.26
Consensus pattern (16 bp):
AAATTAAAGCATATCA
Found at i:23669285 original size:14 final size:14
Alignment explanation
Indices: 23669268--23669297 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
23669258 TTTTAGTTTC
23669268 TTTTTTTTT-CCTT
1 TTTTTTTTTGCCTT
23669281 TTTTTTTTTGCCTT
1 TTTTTTTTTGCCTT
23669295 TTT
1 TTT
23669298 GCTTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.00, C:0.13, G:0.03, T:0.83
Consensus pattern (14 bp):
TTTTTTTTTGCCTT
Found at i:23669397 original size:31 final size:31
Alignment explanation
Indices: 23669340--23669414 Score: 87
Period size: 31 Copynumber: 2.4 Consensus size: 31
23669330 AGGTTGAAAG
* * *
23669340 ATAAAGATGAACGGGATTAAATCATAGGTCAA
1 ATAAAG-TGATCGAGATTAAACCATAGGTCAA
* *
23669372 ATGAAGTGATCGAGATTAAACCATAGGTCGA
1 ATAAAGTGATCGAGATTAAACCATAGGTCAA
*
23669403 GTAAAGTGATCG
1 ATAAAGTGATCG
23669415 CTAATCTGAG
Statistics
Matches: 36, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 31 0.86
32 5 0.14
ACGTcount: A:0.41, C:0.11, G:0.25, T:0.23
Consensus pattern (31 bp):
ATAAAGTGATCGAGATTAAACCATAGGTCAA
Found at i:23669462 original size:22 final size:22
Alignment explanation
Indices: 23669415--23669465 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
23669405 AAAGTGATCG
* *
23669415 CTAATCTGAGCTTGCATGCTAG
1 CTAATTTGAGCTTGCATGCTAA
*
23669437 CTAATTTGAGCTTTCATG-TCAA
1 CTAATTTGAGCTTGCATGCT-AA
23669459 CTAATTT
1 CTAATTT
23669466 TGGGCTTATG
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
21 1 0.04
22 24 0.96
ACGTcount: A:0.25, C:0.20, G:0.16, T:0.39
Consensus pattern (22 bp):
CTAATTTGAGCTTGCATGCTAA
Found at i:23669816 original size:33 final size:32
Alignment explanation
Indices: 23669711--23669950 Score: 173
Period size: 33 Copynumber: 7.4 Consensus size: 32
23669701 AGATAAAATG
* * *
23669711 GGCTTAAAT-TTCATTAGGTGCCAGATAAACT-
1 GGCTTAAATCTTCATTA-ATGCCAGCTAAATTA
* * * ** *
23669742 GGATTTAAATCTTCATTGATGCTAATTAAACTA
1 GG-CTTAAATCTTCATTAATGCCAGCTAAATTA
* *
23669775 GGCTTAAATCTTTATTAATGCCAGCTAATATTG
1 GGCTTAAATCTTCATTAATGCCAGCTAA-ATTA
* *
23669808 GGCTTAAAT-TTCATTAGATGTCAGATAAATTA
1 GGCTTAAATCTTCATTA-ATGCCAGCTAAATTA
** * ** *
23669840 GGCTTAAATCTTCATTGGTGCTATTTATATTA
1 GGCTTAAATCTTCATTAATGCCAGCTAAATTA
*
23669872 GGCTTAAAAT-TTACATTGAATGCCAGCTAAACTA
1 GGCTT-AAATCTT-CATT-AATGCCAGCTAAATTA
* * *
23669906 GGTTTAAAACTTCATTAGATGCCAGCTAAACTA
1 GGCTTAAATCTTCATTA-ATGCCAGCTAAATTA
23669939 GGCTTAAATCTT
1 GGCTTAAATCTT
23669951 TTCATGAGGT
Statistics
Matches: 162, Mismatches: 36, Indels: 20
0.74 0.17 0.09
Matches are distributed among these distances:
31 2 0.01
32 71 0.44
33 74 0.46
34 15 0.09
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (32 bp):
GGCTTAAATCTTCATTAATGCCAGCTAAATTA
Found at i:23669833 original size:97 final size:98
Alignment explanation
Indices: 23669704--23669950 Score: 295
Period size: 97 Copynumber: 2.5 Consensus size: 98
23669694 AAGTATTAGA
* * *
23669704 TAAAATGGGCTTAAATTTCATTAGGTGCCAGATAAACT-GGATTTAAATCTTCATTGATGCTAAT
1 TAAACTGGGCTTAAATTTCATTAGATGCCAGATAAACTAGG-CTTAAATCTTCATTGATGCTAAT
*
23669768 TAAACTAGGCTT-AAATCTT-TATT-AATGCCAGC
65 TAAACTAGGCTTAAAAT-TTACATTGAATGCCAGC
* * * * *
23669800 TAATATTGGGCTTAAATTTCATTAGATGTCAGATAAATTAGGCTTAAATCTTCATTGGTGCTATT
1 TAA-ACTGGGCTTAAATTTCATTAGATGCCAGATAAACTAGGCTTAAATCTTCATTGATGCTAAT
* *
23669865 TATATTAGGCTTAAAATTTACATTGAATGCCAGC
65 TAAACTAGGCTTAAAATTTACATTGAATGCCAGC
* * * *
23669899 TAAACTAGGTTTAAAACTTCATTAGATGCCAGCTAAACTAGGCTTAAATCTT
1 TAAACTGGGCTT-AAATTTCATTAGATGCCAGATAAACTAGGCTTAAATCTT
23669951 TTCATGAGGT
Statistics
Matches: 128, Mismatches: 17, Indels: 9
0.83 0.11 0.06
Matches are distributed among these distances:
96 3 0.02
97 63 0.49
98 15 0.12
99 47 0.37
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.36
Consensus pattern (98 bp):
TAAACTGGGCTTAAATTTCATTAGATGCCAGATAAACTAGGCTTAAATCTTCATTGATGCTAATT
AAACTAGGCTTAAAATTTACATTGAATGCCAGC
Found at i:23669848 original size:32 final size:32
Alignment explanation
Indices: 23669701--23669947 Score: 173
Period size: 32 Copynumber: 7.6 Consensus size: 32
23669691 TATAAGTATT
* * *
23669701 AGATAAAATGGGCTTAAATTTCATTAGGTGCC
1 AGATAAACTAGGCTTAAATTTCATTAGATGCC
* *
23669733 AGATAAACT-GGATTTAAATCTTCATT-GATGCT
1 AGATAAACTAGG-CTTAAAT-TTCATTAGATGCC
*
23669765 A-ATTAAACTAGGCTTAAATCTTTATTA-ATGCC
1 AGA-TAAACTAGGCTTAAAT-TTCATTAGATGCC
* * * *
23669797 AGCTAATATTGGGCTTAAATTTCATTAGATGTC
1 AGATAA-ACTAGGCTTAAATTTCATTAGATGCC
* * *
23669830 AGATAAATTAGGCTTAAATCTTCATT-GGTGCT
1 AGATAAACTAGGCTTAAAT-TTCATTAGATGCC
** * *
23669862 ATTTATATTAGGCTTAAAATTTACATT-GAATGCC
1 AGATAAACTAGGCTT-AAATTT-CATTAG-ATGCC
* * *
23669896 AGCTAAACTAGGTTTAAAACTTCATTAGATGCC
1 AGATAAACTAGGCTT-AAATTTCATTAGATGCC
*
23669929 AGCTAAACTAGGCTTAAAT
1 AGATAAACTAGGCTTAAAT
23669948 CTTTTCATGA
Statistics
Matches: 172, Mismatches: 30, Indels: 26
0.75 0.13 0.11
Matches are distributed among these distances:
31 3 0.02
32 83 0.48
33 66 0.38
34 20 0.12
ACGTcount: A:0.35, C:0.14, G:0.16, T:0.36
Consensus pattern (32 bp):
AGATAAACTAGGCTTAAATTTCATTAGATGCC
Found at i:23670183 original size:31 final size:31
Alignment explanation
Indices: 23670145--23670204 Score: 111
Period size: 31 Copynumber: 1.9 Consensus size: 31
23670135 GTTAAATTAG
23670145 GCTTAATTCCTATAGGTGCCAACTAAACTAA
1 GCTTAATTCCTATAGGTGCCAACTAAACTAA
*
23670176 GCTTAATTCTTATAGGTGCCAACTAAACT
1 GCTTAATTCCTATAGGTGCCAACTAAACT
23670205 GAGTTTAAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.33, C:0.22, G:0.13, T:0.32
Consensus pattern (31 bp):
GCTTAATTCCTATAGGTGCCAACTAAACTAA
Found at i:23670247 original size:34 final size:34
Alignment explanation
Indices: 23670161--23670321 Score: 131
Period size: 34 Copynumber: 4.8 Consensus size: 34
23670151 TTCCTATAGG
* *
23670161 TGCCAACTAAACTAAGCTT-AA-TTCTT-ATAGG-
1 TGCCAACTAAACTAGGCTTAAATTTTTTCAT-GGA
*
23670192 TGCCAACTAAACT-GAGTTTAAATTTTTTCATGGA
1 TGCCAACTAAACTAG-GCTTAAATTTTTTCATGGA
** * *
23670226 TTTCAACTAAGCTAGGCTTAAATCTTTTCATGGA
1 TGCCAACTAAACTAGGCTTAAATTTTTTCATGGA
*
23670260 TGCCAACTAAACTAGGCTTAAATATTTT--TGTGA
1 TGCCAACTAAACTAGGCTTAAATTTTTTCATG-GA
*
23670293 GTGCCAACAAAACTTA-GCTTAAGATTTTT
1 -TGCCAACTAAAC-TAGGCTTAA-ATTTTT
23670322 CCTCAAGAAT
Statistics
Matches: 106, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
31 16 0.15
32 4 0.04
33 8 0.08
34 70 0.66
35 8 0.08
ACGTcount: A:0.33, C:0.17, G:0.14, T:0.36
Consensus pattern (34 bp):
TGCCAACTAAACTAGGCTTAAATTTTTTCATGGA
Found at i:23671980 original size:26 final size:26
Alignment explanation
Indices: 23671933--23671983 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
23671923 TCATTATTGT
* *
23671933 AAAAAAAGGGTTATATGGAATAAACA
1 AAAAAAAGGGTCATATGAAATAAACA
* *
23671959 AAAAAAATGGTCATGTGAAATAAAC
1 AAAAAAAGGGTCATATGAAATAAAC
23671984 TCGTTTAAGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.57, C:0.06, G:0.18, T:0.20
Consensus pattern (26 bp):
AAAAAAAGGGTCATATGAAATAAACA
Found at i:23672617 original size:18 final size:18
Alignment explanation
Indices: 23672594--23672629 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
23672584 CTATATTCTC
*
23672594 TTTTTTTCTATTTTTTTA
1 TTTTTTTCTACTTTTTTA
*
23672612 TTTTTTTTTACTTTTTTA
1 TTTTTTTCTACTTTTTTA
23672630 AGGTTTTTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.11, C:0.06, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTTTTCTACTTTTTTA
Found at i:23679322 original size:10 final size:10
Alignment explanation
Indices: 23679307--23679333 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
23679297 ATTTGGGCCC
23679307 CCATTTTGGG
1 CCATTTTGGG
23679317 CCATTTTGGG
1 CCATTTTGGG
23679327 CCATTTT
1 CCATTTT
23679334 TAATGTCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.11, C:0.22, G:0.22, T:0.44
Consensus pattern (10 bp):
CCATTTTGGG
Found at i:23680584 original size:7 final size:6
Alignment explanation
Indices: 23680567--23680627 Score: 54
Period size: 6 Copynumber: 10.0 Consensus size: 6
23680557 CAATCACAAT
* *
23680567 TAAAAA TAAAATA TAAAAA T-ACAA TAAATA TAAAAA -AATAAA TAATAAA
1 TAAAAA TAAAA-A TAAAAA TAAAAA TAAAAA TAAAAA TAA-AAA TAA-AAA
*
23680616 TCAAAA TAAAAA
1 TAAAAA TAAAAA
23680628 AAACTTATGA
Statistics
Matches: 45, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
5 6 0.13
6 25 0.56
7 14 0.31
ACGTcount: A:0.75, C:0.03, G:0.00, T:0.21
Consensus pattern (6 bp):
TAAAAA
Found at i:23680602 original size:25 final size:25
Alignment explanation
Indices: 23680569--23680629 Score: 74
Period size: 25 Copynumber: 2.5 Consensus size: 25
23680559 ATCACAATTA
*
23680569 AAAAT-AAAATATAAA-AATACAAT-
1 AAAATAAAAAAATAAATAATA-AATC
23680592 AAATATAAAAAAATAAATAATAAATC
1 AAA-ATAAAAAAATAAATAATAAATC
23680618 AAAATAAAAAAA
1 AAAATAAAAAAA
23680630 ACTTATGACC
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 3 0.09
24 2 0.06
25 21 0.64
26 7 0.21
ACGTcount: A:0.77, C:0.03, G:0.00, T:0.20
Consensus pattern (25 bp):
AAAATAAAAAAATAAATAATAAATC
Found at i:23680613 original size:17 final size:17
Alignment explanation
Indices: 23680570--23680613 Score: 52
Period size: 19 Copynumber: 2.5 Consensus size: 17
23680560 TCACAATTAA
* *
23680570 AAATAAAATATAAAAAT
1 AAATAATATAAAAAAAT
23680587 ACAATAAATATAAAAAAAT
1 A-AAT-AATATAAAAAAAT
23680606 AAATAATA
1 AAATAATA
23680614 AATCAAAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
17 5 0.22
18 6 0.26
19 12 0.52
ACGTcount: A:0.75, C:0.02, G:0.00, T:0.23
Consensus pattern (17 bp):
AAATAATATAAAAAAAT
Found at i:23680621 original size:17 final size:14
Alignment explanation
Indices: 23680568--23680625 Score: 53
Period size: 17 Copynumber: 3.6 Consensus size: 14
23680558 AATCACAATT
23680568 AAAAATAAAATATAAA
1 AAAAAT-AAATAT-AA
23680584 AATACAATAAATATAA
1 AA-A-AATAAATATAA
23680600 AAAAATAAATAATAA
1 AAAAATAAAT-ATAA
23680615 ATCAAAATAAA
1 A--AAAATAAA
23680626 AAAAACTTAT
Statistics
Matches: 37, Mismatches: 0, Indels: 9
0.80 0.00 0.20
Matches are distributed among these distances:
14 7 0.19
15 6 0.16
16 6 0.16
17 15 0.41
18 3 0.08
ACGTcount: A:0.76, C:0.03, G:0.00, T:0.21
Consensus pattern (14 bp):
AAAAATAAATATAA
Found at i:23681041 original size:19 final size:19
Alignment explanation
Indices: 23681019--23681057 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
23681009 GCCAAAAACC
*
23681019 TAAAAAAGTCCCAAAAAAT
1 TAAAAAAGACCCAAAAAAT
* *
23681038 TAAACAAGACCCCAAAAAT
1 TAAAAAAGACCCAAAAAAT
23681057 T
1 T
23681058 CAAGAAAATC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.59, C:0.21, G:0.05, T:0.15
Consensus pattern (19 bp):
TAAAAAAGACCCAAAAAAT
Found at i:23681600 original size:18 final size:16
Alignment explanation
Indices: 23681573--23681609 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
23681563 AAATCCCATA
23681573 TTTTTTATTTTTTGACT
1 TTTTTTA-TTTTTGACT
23681590 TTTTCTTATTTTTGACT
1 TTTT-TTATTTTTGACT
23681607 TTT
1 TTT
23681610 GACTTTTGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.84
18 3 0.16
ACGTcount: A:0.11, C:0.08, G:0.05, T:0.76
Consensus pattern (16 bp):
TTTTTTATTTTTGACT
Found at i:23681609 original size:7 final size:7
Alignment explanation
Indices: 23681599--23681642 Score: 52
Period size: 7 Copynumber: 6.0 Consensus size: 7
23681589 TTTTTCTTAT
23681599 TTTTGAC
1 TTTTGAC
23681606 TTTTGAC
1 TTTTGAC
23681613 TTTTGAC
1 TTTTGAC
*
23681620 TTTTCAAC
1 TTTT-GAC
23681628 TTTTTGAC
1 -TTTTGAC
*
23681636 CTTTGAC
1 TTTTGAC
23681643 CCAATAAACA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
7 24 0.75
8 4 0.12
9 4 0.12
ACGTcount: A:0.16, C:0.18, G:0.11, T:0.55
Consensus pattern (7 bp):
TTTTGAC
Found at i:23683360 original size:35 final size:36
Alignment explanation
Indices: 23683321--23683405 Score: 84
Period size: 36 Copynumber: 2.4 Consensus size: 36
23683311 GAACAAGTTA
* *
23683321 GATTTCACCATTGAGAAAATTTTTAA-GG-AAGGTCG
1 GATTTCACCATTGAG-AAAGTTCTAATGGAAAGGTCG
** * * *
23683356 GATTTTGCCATCGAGAGAGTTCTAATGGAAAGGTTG
1 GATTTCACCATTGAGAAAGTTCTAATGGAAAGGTCG
23683392 GATTTCACCATTGA
1 GATTTCACCATTGA
23683406 TAGAATTGAA
Statistics
Matches: 38, Mismatches: 10, Indels: 3
0.75 0.20 0.06
Matches are distributed among these distances:
34 7 0.18
35 14 0.37
36 17 0.45
ACGTcount: A:0.31, C:0.13, G:0.25, T:0.32
Consensus pattern (36 bp):
GATTTCACCATTGAGAAAGTTCTAATGGAAAGGTCG
Found at i:23685285 original size:10 final size:10
Alignment explanation
Indices: 23685260--23685321 Score: 52
Period size: 10 Copynumber: 5.7 Consensus size: 10
23685250 TACTTATTCA
*
23685260 TTTCTTTTACT
1 TTTCTTTT-TT
23685271 TTTCTTTTTT
1 TTTCTTTTTT
23685281 TTTCTTTTTT
1 TTTCTTTTTT
**
23685291 TCTCTCTTTCAT
1 T-T-TCTTTTTT
23685303 TTTCTTCCTTTT
1 TTTCTT--TTTT
23685315 TTTCTTT
1 TTTCTTT
23685322 CCTTTACTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 9
0.75 0.09 0.16
Matches are distributed among these distances:
10 17 0.40
11 10 0.24
12 15 0.36
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTCTTTTTT
Found at i:23685298 original size:22 final size:25
Alignment explanation
Indices: 23685273--23685349 Score: 70
Period size: 26 Copynumber: 3.0 Consensus size: 25
23685263 CTTTTACTTT
23685273 TCTTT-TTTT-TT-CTTTTTTTCTC
1 TCTTTATTTTCTTCCTTTTTTTCTC
*
23685295 TCTTTCATTTTCTTCCTTTTTTTCTT
1 TCTTT-ATTTTCTTCCTTTTTTTCTC
23685321 TCCTTTACTTTTTCATTCCCTTTTTTTCT
1 T-CTTTA--TTTTC-TT-CCTTTTTTTCT
23685350 TAAATGGATT
Statistics
Matches: 45, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
22 5 0.11
24 4 0.09
25 2 0.04
26 12 0.27
27 4 0.09
28 5 0.11
29 2 0.04
30 11 0.24
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.73
Consensus pattern (25 bp):
TCTTTATTTTCTTCCTTTTTTTCTC
Found at i:23685313 original size:26 final size:30
Alignment explanation
Indices: 23685284--23685349 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 30
23685274 CTTTTTTTTT
23685284 CTTTTTTTCTCT-CTTT-CATTTTC-TT-C
1 CTTTTTTTCTCTCCTTTACATTTTCATTCC
* *
23685310 CTTTTTTTCTTTCCTTTACTTTTTCATTCC
1 CTTTTTTTCTCTCCTTTACATTTTCATTCC
23685340 CTTTTTTTCT
1 CTTTTTTTCT
23685350 TAAATGGATT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 11 0.32
27 4 0.12
28 6 0.18
29 2 0.06
30 11 0.32
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.70
Consensus pattern (30 bp):
CTTTTTTTCTCTCCTTTACATTTTCATTCC
Found at i:23685320 original size:12 final size:12
Alignment explanation
Indices: 23685274--23685350 Score: 52
Period size: 14 Copynumber: 5.9 Consensus size: 12
23685264 TTTTACTTTT
23685274 CTTTTTTT-TT-
1 CTTTTTTTCTTC
23685284 CTTTTTTTC-TC
1 CTTTTTTTCTTC
23685295 TCTTTCATTTTCTTC
1 -CTTT--TTTTCTTC
23685310 CTTTTTTTCTTTC
1 CTTTTTTTC-TTC
23685323 CTTTACTTTTTCATTCC
1 C-TT--TTTTTC-TT-C
23685340 CTTTTTTTCTT
1 CTTTTTTTCTT
23685351 AAATGGATTC
Statistics
Matches: 55, Mismatches: 1, Indels: 19
0.73 0.01 0.25
Matches are distributed among these distances:
10 9 0.16
12 9 0.16
13 6 0.11
14 17 0.31
15 2 0.04
16 10 0.18
17 2 0.04
ACGTcount: A:0.04, C:0.23, G:0.00, T:0.73
Consensus pattern (12 bp):
CTTTTTTTCTTC
Found at i:23685820 original size:11 final size:11
Alignment explanation
Indices: 23685801--23685863 Score: 54
Period size: 11 Copynumber: 5.1 Consensus size: 11
23685791 TAATAAAAAA
*
23685801 TTTTCTTTCTT
1 TTTTTTTTCTT
23685812 TTTTTTTTCTT
1 TTTTTTTTCTT
23685823 TTCATTTCATTTCATTT
1 TT--TTT--TTTC--TT
23685840 TGTTTTTTTCTT
1 T-TTTTTTTCTT
23685852 TTTTTTTTCTT
1 TTTTTTTTCTT
23685863 T
1 T
23685864 GCATACTTCT
Statistics
Matches: 44, Mismatches: 1, Indels: 14
0.75 0.02 0.24
Matches are distributed among these distances:
11 23 0.52
12 3 0.07
13 3 0.07
14 4 0.09
15 4 0.09
16 3 0.07
17 3 0.07
18 1 0.02
ACGTcount: A:0.05, C:0.13, G:0.02, T:0.81
Consensus pattern (11 bp):
TTTTTTTTCTT
Found at i:23689091 original size:11 final size:11
Alignment explanation
Indices: 23689077--23689104 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
23689067 ATTTAATGAA
23689077 TATTTTAAATT
1 TATTTTAAATT
23689088 TATTTTAAATT
1 TATTTTAAATT
23689099 TATTTT
1 TATTTT
23689105 TATAGATATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (11 bp):
TATTTTAAATT
Found at i:23696114 original size:26 final size:26
Alignment explanation
Indices: 23696078--23696130 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
23696068 CTTTCAACTC
*
23696078 AAAATTAAAAAGCACTGACATCACAT
1 AAAATTAAAAAGCACTAACATCACAT
23696104 AAAATTAAAAAGCACTAACATCACAT
1 AAAATTAAAAAGCACTAACATCACAT
23696130 A
1 A
23696131 TACTTATTTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.57, C:0.19, G:0.06, T:0.19
Consensus pattern (26 bp):
AAAATTAAAAAGCACTAACATCACAT
Found at i:23697649 original size:20 final size:21
Alignment explanation
Indices: 23697610--23697650 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
23697600 TTCAACCATC
* *
23697610 AAAGAATACAGAATTCACCAG
1 AAAGAATACAAAACTCACCAG
23697631 AAAGAA-ACAAAACTCACCAG
1 AAAGAATACAAAACTCACCAG
23697651 GAAAAAAGAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 12 0.67
21 6 0.33
ACGTcount: A:0.56, C:0.22, G:0.12, T:0.10
Consensus pattern (21 bp):
AAAGAATACAAAACTCACCAG
Found at i:23698452 original size:14 final size:14
Alignment explanation
Indices: 23698435--23698461 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23698425 TTTTATTTTA
23698435 AAATTTATTTATTT
1 AAATTTATTTATTT
23698449 AAATTTATTTATT
1 AAATTTATTTATT
23698462 ATTTATAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (14 bp):
AAATTTATTTATTT
Found at i:23698476 original size:19 final size:20
Alignment explanation
Indices: 23698437--23698500 Score: 82
Period size: 19 Copynumber: 3.4 Consensus size: 20
23698427 TTATTTTAAA
*
23698437 ATTTATT-TATT-TAAATTT
1 ATTTATTATATTATAAATAT
23698455 ATTTATTAT-TTATAAATAT
1 ATTTATTATATTATAAATAT
23698474 ATTTA-TATATTATAAATATT
1 ATTTATTATATTATAAATA-T
23698494 ATTTATT
1 ATTTATT
23698501 TAAAATTCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
18 12 0.30
19 21 0.52
20 6 0.15
21 1 0.03
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (20 bp):
ATTTATTATATTATAAATAT
Found at i:23701807 original size:14 final size:14
Alignment explanation
Indices: 23701790--23701827 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
23701780 TTTTTTTTAA
*
23701790 GAGTTTTTATATTT
1 GAGTTTTTAAATTT
*
23701804 GAGTTTGTAAATTT
1 GAGTTTTTAAATTT
23701818 GA-TTTTTAAA
1 GAGTTTTTAAA
23701828 CTGAAAAACT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
13 7 0.33
14 14 0.67
ACGTcount: A:0.29, C:0.00, G:0.16, T:0.55
Consensus pattern (14 bp):
GAGTTTTTAAATTT
Found at i:23705333 original size:198 final size:198
Alignment explanation
Indices: 23704995--23705391 Score: 618
Period size: 198 Copynumber: 2.0 Consensus size: 198
23704985 GCAGTGTGTT
** * *
23704995 TTTTTAGATTGTATACAGAAGCTTAAGACTTCATTATTCCCATATTTGTTATTTGTTTTCTGTAT
1 TTTTTAGATTGTATACAGAAGCTTAAGACTTCATTATTCCCATATTTACTATTTGTTTCCTATAT
* * *
23705060 ACAATCTATGTGACGTCTGTTATTTTGTTTGTTCTTAAAAGCTTAAAGTTTCAAGCTTTATTGTT
66 ACAATCTATATGACATCTGTTATTTTGTTTGTTCTTAAAAGCTTAAAGTTTCAAGCTTTATGGTT
*
23705125 TGTTAGGTTTTCTTTTATTGTATATGAGATTATTGTCAAAACCAGGCTTCATTTTGTTCATCGTT
131 TGTTAGGTTTTCTTTTATTGTATATGAGATTATTGTCAAAACCAAGCTTCATTTTGTTCATCGTT
23705190 TGC
196 TGC
* * *
23705193 TTTTTAGATTGTATACATAAGCTTAA-AGCTTCATTATTCTCATATTTACTGTTTGTTTCCTATA
1 TTTTTAGATTGTATACAGAAGCTTAAGA-CTTCATTATTCCCATATTTACTATTTGTTTCCTATA
* * * *
23705257 TATAGTCTATATGGCATTTGTTATTTTGTTTGTTCTTGAAAA-CTTAAAGTTTCAAGCTTTATGG
65 TACAATCTATATGACATCTGTTATTTTGTTTGTTCTT-AAAAGCTTAAAGTTTCAAGCTTTATGG
*
23705321 TTTGTTAGGTTTTCTTTTATTGTATATGAGGTTATTGTCAAAACCAAGCTTCATTTTGTTCATCG
129 TTTGTTAGGTTTTCTTTTATTGTATATGAGATTATTGTCAAAACCAAGCTTCATTTTGTTCATCG
23705386 TTTGC
194 TTTGC
23705391 T
1 T
23705392 AAGTCATTTT
Statistics
Matches: 181, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
197 1 0.01
198 176 0.97
199 4 0.02
ACGTcount: A:0.23, C:0.12, G:0.15, T:0.49
Consensus pattern (198 bp):
TTTTTAGATTGTATACAGAAGCTTAAGACTTCATTATTCCCATATTTACTATTTGTTTCCTATAT
ACAATCTATATGACATCTGTTATTTTGTTTGTTCTTAAAAGCTTAAAGTTTCAAGCTTTATGGTT
TGTTAGGTTTTCTTTTATTGTATATGAGATTATTGTCAAAACCAAGCTTCATTTTGTTCATCGTT
TGC
Found at i:23706159 original size:20 final size:21
Alignment explanation
Indices: 23706135--23706180 Score: 67
Period size: 20 Copynumber: 2.2 Consensus size: 21
23706125 ATTTTTATTA
23706135 ATATTAAAATAATAATATTTT
1 ATATTAAAATAATAATATTTT
* *
23706156 -TATTAAAATATTTATATTTT
1 ATATTAAAATAATAATATTTT
23706176 ATATT
1 ATATT
23706181 GAAAGTTCTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 18 0.82
21 4 0.18
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (21 bp):
ATATTAAAATAATAATATTTT
Found at i:23716858 original size:32 final size:34
Alignment explanation
Indices: 23716821--23716895 Score: 84
Period size: 32 Copynumber: 2.3 Consensus size: 34
23716811 TTTCTTTTAA
*
23716821 ATTTTTAATGTT-TTATTATAATATAATA-TTTT
1 ATTTTTAATGTTATGATTATAATATAATAGTTTT
* * *
23716853 ATTTTT-TTGTTATGATTTTAATATATTAGTTTT
1 ATTTTTAATGTTATGATTATAATATAATAGTTTT
23716886 ATTTTCTAAT
1 ATTTT-TAAT
23716896 TTAATTTTTT
Statistics
Matches: 34, Mismatches: 5, Indels: 5
0.77 0.11 0.11
Matches are distributed among these distances:
31 4 0.12
32 19 0.56
33 9 0.26
34 1 0.03
35 1 0.03
ACGTcount: A:0.29, C:0.01, G:0.05, T:0.64
Consensus pattern (34 bp):
ATTTTTAATGTTATGATTATAATATAATAGTTTT
Found at i:23717541 original size:17 final size:18
Alignment explanation
Indices: 23717519--23717552 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
23717509 TAGTATGTAC
*
23717519 AATTT-ATATGAAGTTAT
1 AATTTAATATAAAGTTAT
23717536 AATTTAATATAAAGTTA
1 AATTTAATATAAAGTTA
23717553 GTATTATTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (18 bp):
AATTTAATATAAAGTTAT
Found at i:23718902 original size:24 final size:24
Alignment explanation
Indices: 23718875--23718923 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
23718865 TTGAAACCCT
23718875 AAATGAAATATAAAGTGGGAATAC
1 AAATGAAATATAAAGTGGGAATAC
23718899 AAATGAAATATAAAGTGGGAATAC
1 AAATGAAATATAAAGTGGGAATAC
23718923 A
1 A
23718924 TTATCTAAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.55, C:0.04, G:0.20, T:0.20
Consensus pattern (24 bp):
AAATGAAATATAAAGTGGGAATAC
Found at i:23729536 original size:23 final size:22
Alignment explanation
Indices: 23729493--23729537 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 22
23729483 AAAAAATCAC
*
23729493 ACACAAAAAAAAAAGCAAACAA
1 ACACAAAAAAAAAAGAAAACAA
23729515 ACACAAAAGAAAAAA-AATAACAA
1 ACACAAAA-AAAAAAGAA-AACAA
23729538 TACGAAAACC
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 9 0.45
23 11 0.55
ACGTcount: A:0.78, C:0.16, G:0.04, T:0.02
Consensus pattern (22 bp):
ACACAAAAAAAAAAGAAAACAA
Found at i:23731340 original size:14 final size:15
Alignment explanation
Indices: 23731321--23731349 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
23731311 TCAAAAGCAG
23731321 TCAAATATAG-ACAA
1 TCAAATATAGCACAA
23731335 TCAAATATAGCACAA
1 TCAAATATAGCACAA
23731350 CATAAAACTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.55, C:0.17, G:0.07, T:0.21
Consensus pattern (15 bp):
TCAAATATAGCACAA
Found at i:23733343 original size:43 final size:42
Alignment explanation
Indices: 23733291--23733384 Score: 111
Period size: 41 Copynumber: 2.2 Consensus size: 42
23733281 AATTTGTATA
* *
23733291 TAATAAAAATTTAGTGT-ATTTTTAATATTTATAAATTAATAA-T
1 TAATTAAAATTTAGTGTAATTATT--T-TTTATAAATTAATAATT
*
23733334 TAATTAAAATTTATTGTAATTATTTTTTATAAATTAATAATT
1 TAATTAAAATTTAGTGTAATTATTTTTTATAAATTAATAATT
*
23733376 TTATTAAAA
1 TAATTAAAA
23733385 ATTAATAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
41 15 0.33
42 10 0.22
43 15 0.33
44 5 0.11
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (42 bp):
TAATTAAAATTTAGTGTAATTATTTTTTATAAATTAATAATT
Found at i:23733388 original size:19 final size:18
Alignment explanation
Indices: 23733350--23733393 Score: 61
Period size: 19 Copynumber: 2.4 Consensus size: 18
23733340 AAATTTATTG
* *
23733350 TAATTATTTTTTATAAAT
1 TAATAATTTTTTAAAAAT
23733368 TAATAATTTTATTAAAAAT
1 TAATAATTTT-TTAAAAAT
23733387 TAATAAT
1 TAATAAT
23733394 AATATATTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (18 bp):
TAATAATTTTTTAAAAAT
Found at i:23740943 original size:167 final size:167
Alignment explanation
Indices: 23740667--23740988 Score: 529
Period size: 167 Copynumber: 1.9 Consensus size: 167
23740657 CAGAAAGAGT
*
23740667 CTTCTCTGAATGAAATTGTAGAAAAAGAGCCTTCCCTGGGCAAAGATGAAGACTTCGATCTTAAT
1 CTTCTCTGAATGAAATTGTAGAAAAAGAGCCTTCCCTGAGCAAAGATGAAGACTTCGATCTTAAT
* * * *
23740732 CCAGTGAGTGAGGTGAAGTTATGATTACAATTAACATAAGCATCTGGCACGGCTTATAGATTGAT
66 CCAGTGAGCGAGGTGAAATTATGATTACAATTAACACAAGCATCTGGCACGGCTTATACATTGAT
*
23740797 GCATGTTACAAAACATAGGCATTAGTAGAAAAAGATC
131 GCACGTTACAAAACATAGGCATTAGTAGAAAAAGATC
23740834 CTTCTCTGAATGAAATTGTAGAAAAAGAGCCTTCCCTGAGCAAAGATGAAGACCTT-GATCTTAA
1 CTTCTCTGAATGAAATTGTAGAAAAAGAGCCTTCCCTGAGCAAAGATGAAGA-CTTCGATCTTAA
** * * *
23740898 TCTGGTGGGCGAGGTGAAATTATGATTACAATTAACACAAGCATCTGGCAGGGCTTGTACATTGA
65 TCCAGTGAGCGAGGTGAAATTATGATTACAATTAACACAAGCATCTGGCACGGCTTATACATTGA
23740963 TGCACGTTACAAAACATAGGCATTAG
130 TGCACGTTACAAAACATAGGCATTAG
23740989 CTTACAAACT
Statistics
Matches: 143, Mismatches: 11, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
167 140 0.98
168 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.22, T:0.27
Consensus pattern (167 bp):
CTTCTCTGAATGAAATTGTAGAAAAAGAGCCTTCCCTGAGCAAAGATGAAGACTTCGATCTTAAT
CCAGTGAGCGAGGTGAAATTATGATTACAATTAACACAAGCATCTGGCACGGCTTATACATTGAT
GCACGTTACAAAACATAGGCATTAGTAGAAAAAGATC
Found at i:23745128 original size:3 final size:3
Alignment explanation
Indices: 23745120--23745168 Score: 80
Period size: 3 Copynumber: 16.3 Consensus size: 3
23745110 TAAAATTTAC
* *
23745120 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TCT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
23745168 T
1 T
23745169 TAATAAAAGG
Statistics
Matches: 43, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.29, C:0.02, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:23757588 original size:56 final size:54
Alignment explanation
Indices: 23757519--23757703 Score: 210
Period size: 56 Copynumber: 3.3 Consensus size: 54
23757509 TTCCTCAAAT
* *
23757519 AATTTT-TTTAATAAAAAATATATTAAAAAATGTTTGAGGAAAAGTTGAAATATCA
1 AATTTTCTTAAAT-AAAAATAT-TTAAAAAATGTTTGAGAAAAAGTTGAAATATCA
* *
23757574 AATTTTCTTAAATAAAAATATTTCAAAAAATGTTTTGAGTAAAAGTTGAAGTATCA
1 AATTTTCTTAAATAAAAATATTT-AAAAAATG-TTTGAGAAAAAGTTGAAATATCA
* * * *
23757630 ATTTTTCTTAAATAAAAATATTTCAAAAATATTTGAAAAAAAAGTTGAAAGTATCA
1 AATTTTCTTAAATAAAAATATTTAAAAAATGTTTG-AGAAAAAGTTGAAA-TATCA
*
23757686 ATTTTTTCTTTAAATAAA
1 A-ATTTTC-TTAAATAAA
23757704 GCATCAATTT
Statistics
Matches: 114, Mismatches: 9, Indels: 11
0.85 0.07 0.08
Matches are distributed among these distances:
54 6 0.05
55 39 0.34
56 54 0.47
57 6 0.05
58 9 0.08
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.38
Consensus pattern (54 bp):
AATTTTCTTAAATAAAAATATTTAAAAAATGTTTGAGAAAAAGTTGAAATATCA
Found at i:23757603 original size:68 final size:68
Alignment explanation
Indices: 23757441--23757604 Score: 185
Period size: 69 Copynumber: 2.4 Consensus size: 68
23757431 AAACCAATTC
* * *
23757441 TTTCCCTAAATAAAAA-ATATAAAAAAATATACTTAAAAATGTTTGGAGGAAAAGTTGAAATATT
1 TTTCCTTAAATAAAAATATTTAAAAAAATATACTTAAAAATGTTTGGAGGAAAAGTTGAAATATA
23757505 AAT
66 AAT
* ** *
23757508 TTTCCTCAAAT-AATTTTTTTAATAAAAAATATA-TTAAAAAATGTTT-GAGGAAAAGTTGAAAT
1 TTTCCTTAAATAAAAATATTT-A-AAAAAATATACTT-AAAAATGTTTGGAGGAAAAGTTGAAAT
23757570 ATCAAAT
63 AT-AAAT
*
23757577 TTT-CTTAAATAAAAATATTTCAAAAAAT
1 TTTCCTTAAATAAAAATATTTAAAAAAAT
23757605 GTTTTGAGTA
Statistics
Matches: 79, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
66 2 0.03
67 18 0.23
68 27 0.34
69 32 0.41
ACGTcount: A:0.51, C:0.06, G:0.08, T:0.35
Consensus pattern (68 bp):
TTTCCTTAAATAAAAATATTTAAAAAAATATACTTAAAAATGTTTGGAGGAAAAGTTGAAATATA
AAT
Found at i:23757704 original size:24 final size:25
Alignment explanation
Indices: 23757677--23757728 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
23757667 AAAAAAGTTG
* *
23757677 AAAGTATCAA-TTTTTTCTTTAAAT
1 AAAGCATCAATTTTTTTCTTAAAAT
23757701 AAAGCATCAATTTTTTTCTTAAAAT
1 AAAGCATCAATTTTTTTCTTAAAAT
23757726 AAA
1 AAA
23757729 AATAGAAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 9 0.36
25 16 0.64
ACGTcount: A:0.42, C:0.10, G:0.04, T:0.44
Consensus pattern (25 bp):
AAAGCATCAATTTTTTTCTTAAAAT
Found at i:23761975 original size:12 final size:12
Alignment explanation
Indices: 23761958--23761988 Score: 53
Period size: 12 Copynumber: 2.5 Consensus size: 12
23761948 TCACTAATAT
23761958 CCATATACAACA
1 CCATATACAACA
23761970 CCATATACAACA
1 CCATATACAACA
23761982 CTCATAT
1 C-CATAT
23761989 TAAACCATGA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 13 0.72
13 5 0.28
ACGTcount: A:0.45, C:0.32, G:0.00, T:0.23
Consensus pattern (12 bp):
CCATATACAACA
Done.