Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 144 of 195
Found at i:24298619 original size:17 final size:18
Alignment explanation
Indices: 24298597--24298646 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 18
24298587 AGGTTCTCAA
24298597 TTCAAAGATTCACAAGG-
1 TTCAAAGATTCACAAGGC
*
24298614 TTCAAAGATTCGCAAGGC
1 TTCAAAGATTCACAAGGC
*
24298632 TTC-TAGATTCACAAG
1 TTCAAAGATTCACAAG
24298647 AACTTTTAGT
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
17 26 0.90
18 3 0.10
ACGTcount: A:0.36, C:0.20, G:0.18, T:0.26
Consensus pattern (18 bp):
TTCAAAGATTCACAAGGC
Found at i:24298688 original size:17 final size:18
Alignment explanation
Indices: 24298643--24298693 Score: 68
Period size: 18 Copynumber: 2.9 Consensus size: 18
24298633 TCTAGATTCA
*
24298643 CAAGAACTTTTAGTTTTG
1 CAAGAACTTTTAGATTTG
* *
24298661 TAAGAATTTTTAGATTTG
1 CAAGAACTTTTAGATTTG
24298679 CAAGAA-TTTTAGATT
1 CAAGAACTTTTAGATT
24298694 CATAAAATTT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
17 9 0.31
18 20 0.69
ACGTcount: A:0.33, C:0.06, G:0.16, T:0.45
Consensus pattern (18 bp):
CAAGAACTTTTAGATTTG
Found at i:24298717 original size:34 final size:33
Alignment explanation
Indices: 24298638--24298805 Score: 85
Period size: 34 Copynumber: 4.9 Consensus size: 33
24298628 AGGCTTCTAG
* ** *
24298638 ATTCACAAGAACTTTTAGTTTTGTAAGAATTTTTAG
1 ATTCACAAGAA-TTTTAGATTCATAA-AA-TTTTAA
**
24298674 ATTTGCAAGAATTTTAGATTCATAAAATTTTCAA
1 ATTCACAAGAATTTTAGATTCATAAAATTTT-AA
** *
24298708 ATTCACAAG-ATTTTCAGATAGATAAAAATTTTAT
1 ATTCACAAGAATTTT-AGATTCAT-AAAATTTTAA
* ** *
24298742 ATTCATAAGAA-TTT-GATTC-TCAGGATTTTAG
1 ATTCACAAGAATTTTAGATTCAT-AAAATTTTAA
*
24298773 ATT-AGCAAGAATTTTTTAGATTCGTAAAATTTT
1 ATTCA-CAAGAA--TTTTAGATTCATAAAATTTT
24298806 TAGGTTTGTA
Statistics
Matches: 101, Mismatches: 21, Indels: 21
0.71 0.15 0.15
Matches are distributed among these distances:
30 1 0.01
31 16 0.16
32 3 0.03
33 9 0.09
34 31 0.31
35 31 0.31
36 10 0.10
ACGTcount: A:0.38, C:0.08, G:0.12, T:0.42
Consensus pattern (33 bp):
ATTCACAAGAATTTTAGATTCATAAAATTTTAA
Found at i:24298821 original size:18 final size:18
Alignment explanation
Indices: 24298644--24298822 Score: 74
Period size: 17 Copynumber: 10.4 Consensus size: 18
24298634 CTAGATTCAC
* * *
24298644 AAGAACTTTTAGTTTTGT
1 AAGAATTTTTAGATTCGT
* *
24298662 AAGAATTTTTAGATTTGC
1 AAGAATTTTTAGATTCGT
*
24298680 AAGAA-TTTTAGATTCAT
1 AAGAATTTTTAGATTCGT
* * **
24298697 AA-AATTTTCAAATTCAC
1 AAGAATTTTTAGATTCGT
* *
24298714 AAG-ATTTTCAGA-TAGAT
1 AAGAATTTTTAGATTCG-T
* * *
24298731 AA-AAATTTTATATTCAT
1 AAGAATTTTTAGATTCGT
24298748 AAGAA--TTT-GATTC-T
1 AAGAATTTTTAGATTCGT
* * * *
24298762 CAGGA-TTTTAGATTAGC
1 AAGAATTTTTAGATTCGT
24298779 AAGAATTTTTTAGATTCGT
1 AAGAA-TTTTTAGATTCGT
* *
24298798 AA-AATTTTTAGGTTTGT
1 AAGAATTTTTAGATTCGT
24298815 AAGAATTT
1 AAGAATTT
24298823 CATTCTTAAG
Statistics
Matches: 120, Mismatches: 29, Indels: 24
0.69 0.17 0.14
Matches are distributed among these distances:
14 4 0.03
15 7 0.06
16 10 0.08
17 57 0.47
18 30 0.25
19 12 0.10
ACGTcount: A:0.37, C:0.07, G:0.13, T:0.43
Consensus pattern (18 bp):
AAGAATTTTTAGATTCGT
Found at i:24301110 original size:20 final size:21
Alignment explanation
Indices: 24301085--24301126 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
24301075 TTCTTCTTTT
*
24301085 TTTTTTTAA-AAATAAAATCA
1 TTTTTTTAATAAAAAAAATCA
24301105 TTTTTTTAATAAAAAAAATCA
1 TTTTTTTAATAAAAAAAATCA
24301126 T
1 T
24301127 GTGGATCTCC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
20 9 0.45
21 11 0.55
ACGTcount: A:0.50, C:0.05, G:0.00, T:0.45
Consensus pattern (21 bp):
TTTTTTTAATAAAAAAAATCA
Found at i:24304129 original size:208 final size:207
Alignment explanation
Indices: 24303759--24304175 Score: 712
Period size: 208 Copynumber: 2.0 Consensus size: 207
24303749 GTGTTAGAAA
*
24303759 TAAATGCAATTACTTTTATTGAAGTTTCCTCTAAATCATTCCTCAATTTGTGCTAAATTTAGAGT
1 TAAATGCAATTACTTTTATTGAAGTTTCCTCTAAATCATTCCTCAATTTGTGCTAAATTTAGAGC
* * *
24303824 AGTTCCTTTCCTAGAGATTTCTTAAAAATTTAAGATTTGAAAATCTTAAGAATCTCTCATTGGAT
66 AATTCCTTTCCTAAAGATTTCTTAAAAATTTAAGATTTGAAAATCTTAAGAATCTCTCATTGCAT
* *
24303889 AATTGTTAGTTCAATCCCAAAATTTTATTAAATTTGTTTACGTATTTTATTTTTTAAAATTGAAA
131 AATTGTTAGCTCAATCCCAAAATTTTATTAAATTTGTTTACGTATTTTATTTTTTAAAATTAAAA
24303954 ATAAATATTAAT
196 ATAAATATTAAT
**
24303966 TAAATGCAATTACTTTTATTGAAGTTTCCTCTAAATCATT-CTACCTTTTGTGCTAAATTTAGAG
1 TAAATGCAATTACTTTTATTGAAGTTTCCTCTAAATCATTCCT-CAATTTGTGCTAAATTTAGAG
24304030 CAATTCC-TTCCATAAAGATTTCTTAAAAAATTTAAGATTTGAAAATCTTAAGAATCTCTCATTG
65 CAATTCCTTTCC-TAAAGATTTCTT-AAAAATTTAAGATTTGAAAATCTTAAGAATCTCTCATTG
*
24304094 CATAATTGTTAGCTCAATCCCAAAATTTTATTAAATTTGTTTATGTATTTTATTTTTTAAAATTA
128 CATAATTGTTAGCTCAATCCCAAAATTTTATTAAATTTGTTTACGTATTTTATTTTTTAAAATTA
24304159 AAAATAAATATTAAT
193 AAAATAAATATTAAT
24304174 TA
1 TA
24304176 TTGTTATTAA
Statistics
Matches: 198, Mismatches: 9, Indels: 5
0.93 0.04 0.02
Matches are distributed among these distances:
206 6 0.03
207 75 0.38
208 117 0.59
ACGTcount: A:0.36, C:0.12, G:0.09, T:0.44
Consensus pattern (207 bp):
TAAATGCAATTACTTTTATTGAAGTTTCCTCTAAATCATTCCTCAATTTGTGCTAAATTTAGAGC
AATTCCTTTCCTAAAGATTTCTTAAAAATTTAAGATTTGAAAATCTTAAGAATCTCTCATTGCAT
AATTGTTAGCTCAATCCCAAAATTTTATTAAATTTGTTTACGTATTTTATTTTTTAAAATTAAAA
ATAAATATTAAT
Found at i:24306227 original size:33 final size:34
Alignment explanation
Indices: 24306190--24306278 Score: 103
Period size: 34 Copynumber: 2.6 Consensus size: 34
24306180 CAAGACTTTC
*
24306190 AGATTCATAAGAATTTAGATTTC-CAAGAATAG-A
1 AGATTCACAAGAATTTAGATTTCACAAGAA-AGAA
* *
24306223 AGATTCACAAGAGTTTTAGA-TTCATAAGAAAGAA
1 AGATTCACAAGA-ATTTAGATTTCACAAGAAAGAA
*
24306257 AGATTCACAAGAACTTAGATTT
1 AGATTCACAAGAATTTAGATTT
24306279 TAAGAATTTT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
33 21 0.45
34 26 0.55
ACGTcount: A:0.45, C:0.10, G:0.16, T:0.29
Consensus pattern (34 bp):
AGATTCACAAGAATTTAGATTTCACAAGAAAGAA
Found at i:24306233 original size:17 final size:17
Alignment explanation
Indices: 24306213--24306269 Score: 53
Period size: 17 Copynumber: 3.4 Consensus size: 17
24306203 TTTAGATTTC
24306213 CAAGAATAGAAGATTCA
1 CAAGAATAGAAGATTCA
* ***
24306230 CAAGAGTTTTAGATTCA
1 CAAGAATAGAAGATTCA
*
24306247 TAAGAA-AGAAAGATTCA
1 CAAGAATAG-AAGATTCA
24306264 CAAGAA
1 CAAGAA
24306270 CTTAGATTTT
Statistics
Matches: 29, Mismatches: 10, Indels: 2
0.71 0.24 0.05
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.51, C:0.11, G:0.18, T:0.21
Consensus pattern (17 bp):
CAAGAATAGAAGATTCA
Found at i:24306303 original size:18 final size:18
Alignment explanation
Indices: 24306280--24306355 Score: 75
Period size: 18 Copynumber: 4.3 Consensus size: 18
24306270 CTTAGATTTT
*
24306280 AAGAATTTTTAGATTCAC
1 AAGAATTTTCAGATTCAC
**
24306298 AAGAATTTAAAGA-TCTAC
1 AAGAATTTTCAGATTC-AC
* *
24306316 GAGAATTTTCA-ATTCAT
1 AAGAATTTTCAGATTCAC
*
24306333 AAGAATTTTCATATTCAC
1 AAGAATTTTCAGATTCAC
24306351 AAGAA
1 AAGAA
24306356 CTCATATTCA
Statistics
Matches: 47, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
17 14 0.30
18 33 0.70
ACGTcount: A:0.43, C:0.12, G:0.11, T:0.34
Consensus pattern (18 bp):
AAGAATTTTCAGATTCAC
Found at i:24306362 original size:16 final size:17
Alignment explanation
Indices: 24306327--24306381 Score: 58
Period size: 16 Copynumber: 3.2 Consensus size: 17
24306317 AGAATTTTCA
* *
24306327 ATTCATAAGAATTTTCAT
1 ATTCACAAGAA-TCTCAT
24306345 ATTCACAAGAA-CTCAT
1 ATTCACAAGAATCTCAT
* *
24306361 ATTCATAAGAATTTCAT
1 ATTCACAAGAATCTCAT
24306378 ATTC
1 ATTC
24306382 TTCATTCTAA
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
16 14 0.44
17 8 0.25
18 10 0.31
ACGTcount: A:0.40, C:0.16, G:0.05, T:0.38
Consensus pattern (17 bp):
ATTCACAAGAATCTCAT
Found at i:24306379 original size:17 final size:18
Alignment explanation
Indices: 24306317--24306381 Score: 84
Period size: 17 Copynumber: 3.8 Consensus size: 18
24306307 AAGATCTACG
24306317 AGAATTTTCA-ATTCATA
1 AGAATTTTCATATTCATA
*
24306334 AGAATTTTCATATTCACA
1 AGAATTTTCATATTCATA
*
24306352 AGAA--CTCATATTCATA
1 AGAATTTTCATATTCATA
24306368 AGAA-TTTCATATTC
1 AGAATTTTCATATTC
24306382 TTCATTCTAA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.33
17 18 0.43
18 10 0.24
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.38
Consensus pattern (18 bp):
AGAATTTTCATATTCATA
Found at i:24312785 original size:13 final size:14
Alignment explanation
Indices: 24312758--24312786 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
24312748 GAACAAAAAT
24312758 TATCATGCAAATAA
1 TATCATGCAAATAA
24312772 TATCATGC-AATAA
1 TATCATGCAAATAA
24312785 TA
1 TA
24312787 ATTAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.48, C:0.14, G:0.07, T:0.31
Consensus pattern (14 bp):
TATCATGCAAATAA
Found at i:24312819 original size:34 final size:35
Alignment explanation
Indices: 24312776--24312846 Score: 117
Period size: 34 Copynumber: 2.1 Consensus size: 35
24312766 AAATAATATC
*
24312776 ATGCAATAATAATTAATATGTTAATAAT-ATAATA
1 ATGCAATAATAATTAATATATTAATAATCATAATA
*
24312810 ATGCAATAATAATTAATATATTAATAATCATACTA
1 ATGCAATAATAATTAATATATTAATAATCATAATA
24312845 AT
1 AT
24312847 AATAAATAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
34 27 0.79
35 7 0.21
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (35 bp):
ATGCAATAATAATTAATATATTAATAATCATAATA
Found at i:24312849 original size:23 final size:26
Alignment explanation
Indices: 24312796--24312855 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
24312786 AATTAATATG
24312796 TTAATAATATAATAATGCAATAATAA
1 TTAATAATATAATAATGCAATAATAA
24312822 TTAAT-ATATTAATAAT-CATACTAATAA
1 TTAATAATA-TAATAATGCA-A-TAATAA
*
24312849 TAAATAA
1 TTAATAA
24312856 CAATCATGCA
Statistics
Matches: 29, Mismatches: 1, Indels: 6
0.81 0.03 0.17
Matches are distributed among these distances:
25 5 0.17
26 13 0.45
27 10 0.34
28 1 0.03
ACGTcount: A:0.57, C:0.05, G:0.02, T:0.37
Consensus pattern (26 bp):
TTAATAATATAATAATGCAATAATAA
Found at i:24314661 original size:13 final size:13
Alignment explanation
Indices: 24314643--24314694 Score: 59
Period size: 13 Copynumber: 3.7 Consensus size: 13
24314633 AAATTGTGAT
24314643 TATTTTATTATTG
1 TATTTTATTATTG
24314656 TATTTTATTTAATTTTG
1 TATTTTA-TT-A--TTG
*
24314673 TATTTGATTATTG
1 TATTTTATTATTG
24314686 TATTTTATT
1 TATTTTATT
24314695 GGATTGTGTG
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
13 18 0.55
14 2 0.06
15 2 0.06
16 2 0.06
17 9 0.27
ACGTcount: A:0.23, C:0.00, G:0.08, T:0.69
Consensus pattern (13 bp):
TATTTTATTATTG
Found at i:24314665 original size:18 final size:17
Alignment explanation
Indices: 24314642--24314677 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
24314632 TAAATTGTGA
*
24314642 TTATTTTATTATTGTATT
1 TTATTTAATT-TTGTATT
24314660 TTATTTAATTTTGTATT
1 TTATTTAATTTTGTATT
24314677 T
1 T
24314678 GATTATTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 8 0.47
18 9 0.53
ACGTcount: A:0.22, C:0.00, G:0.06, T:0.72
Consensus pattern (17 bp):
TTATTTAATTTTGTATT
Found at i:24317680 original size:22 final size:22
Alignment explanation
Indices: 24317654--24317697 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
24317644 GCATGATTTC
*
24317654 AAGTCCT-CGAGGTAAGATTTGT
1 AAGTCCTCCGAGCTAA-ATTTGT
*
24317676 AAGTCTTCCGAGCTAAATTTGT
1 AAGTCCTCCGAGCTAAATTTGT
24317698 TGGGCAAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 12 0.63
23 7 0.37
ACGTcount: A:0.27, C:0.16, G:0.23, T:0.34
Consensus pattern (22 bp):
AAGTCCTCCGAGCTAAATTTGT
Found at i:24317765 original size:44 final size:43
Alignment explanation
Indices: 24317712--24317872 Score: 162
Period size: 44 Copynumber: 3.7 Consensus size: 43
24317702 CAAAAATAAT
*
24317712 GAGCTTTTTATATTTTTCAAAAGCTGTTGAGCTTCTGTTGAAAA
1 GAGCTTTTTATATTTTTC-AAAGCTGTTGAGCCTCTGTTGAAAA
* * * * *
24317756 GAGCCTTTTATATTTTTTAAAAGCTATTAAGCCTCTATTGAAAA
1 GAGCTTTTTATA-TTTTTCAAAGCTGTTGAGCCTCTGTTGAAAA
* * * * * * *
24317800 AAGCTTTTTATATTTTT-TAAGTTGTTGATCCTCTGATGAGAG
1 GAGCTTTTTATATTTTTCAAAGCTGTTGAGCCTCTGTTGAAAA
* *
24317842 GAGCTTTTTATATTTTTCATAGTTGTTGAGC
1 GAGCTTTTTATATTTTTCAAAGCTGTTGAGC
24317873 TTCTATTTAG
Statistics
Matches: 94, Mismatches: 21, Indels: 5
0.78 0.17 0.04
Matches are distributed among these distances:
42 32 0.34
43 15 0.16
44 42 0.45
45 5 0.05
ACGTcount: A:0.27, C:0.11, G:0.17, T:0.45
Consensus pattern (43 bp):
GAGCTTTTTATATTTTTCAAAGCTGTTGAGCCTCTGTTGAAAA
Found at i:24319045 original size:17 final size:17
Alignment explanation
Indices: 24319025--24319087 Score: 64
Period size: 17 Copynumber: 3.8 Consensus size: 17
24319015 TTGTGATTAT
24319025 TTGATTATTGTATTTTA
1 TTGATTATTGTATTTTA
24319042 TTGAATT-TTGTA---T-
1 TTG-ATTATTGTATTTTA
24319055 TTGATTATTGTATTTTA
1 TTGATTATTGTATTTTA
24319072 TTGGATTATGTGTATT
1 TT-GATTAT-TGTATT
24319088 AAATTGTATA
Statistics
Matches: 38, Mismatches: 0, Indels: 14
0.73 0.00 0.27
Matches are distributed among these distances:
12 3 0.08
13 8 0.21
14 1 0.03
16 1 0.03
17 10 0.26
18 9 0.24
19 6 0.16
ACGTcount: A:0.22, C:0.00, G:0.16, T:0.62
Consensus pattern (17 bp):
TTGATTATTGTATTTTA
Found at i:24319058 original size:13 final size:13
Alignment explanation
Indices: 24319022--24319069 Score: 51
Period size: 13 Copynumber: 3.4 Consensus size: 13
24319012 AAATTGTGAT
24319022 TATTTGATTATTG
1 TATTTGATTATTG
*
24319035 TATTTTATTGAATTTTG
1 TATTTGATT--A--TTG
24319052 TATTTGATTATTG
1 TATTTGATTATTG
24319065 TATTT
1 TATTT
24319070 TATTGGATTA
Statistics
Matches: 29, Mismatches: 2, Indels: 8
0.74 0.05 0.21
Matches are distributed among these distances:
13 16 0.55
15 2 0.07
17 11 0.38
ACGTcount: A:0.23, C:0.00, G:0.12, T:0.65
Consensus pattern (13 bp):
TATTTGATTATTG
Found at i:24326573 original size:15 final size:16
Alignment explanation
Indices: 24326539--24326576 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
24326529 CATGTTCTTT
24326539 TTTTTATTATTTTCAA
1 TTTTTATTATTTTCAA
*
24326555 -TTTTGTTATTTT-AA
1 TTTTTATTATTTTCAA
24326569 TTTTTATT
1 TTTTTATT
24326577 GATTAGCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 3
0.79 0.08 0.12
Matches are distributed among these distances:
14 2 0.11
15 17 0.89
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (16 bp):
TTTTTATTATTTTCAA
Found at i:24327812 original size:20 final size:20
Alignment explanation
Indices: 24327787--24327826 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
24327777 ATTGAGAAAG
24327787 AAAAAAAAAAGAAAACCAAA
1 AAAAAAAAAAGAAAACCAAA
*
24327807 AAAAAAAAAAGAAAAGCAAA
1 AAAAAAAAAAGAAAACCAAA
24327827 GCAAAGTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.85, C:0.07, G:0.07, T:0.00
Consensus pattern (20 bp):
AAAAAAAAAAGAAAACCAAA
Found at i:24331758 original size:74 final size:74
Alignment explanation
Indices: 24331651--24331793 Score: 173
Period size: 74 Copynumber: 1.9 Consensus size: 74
24331641 ATTAACGGGT
* * * *
24331651 ACCTAAGCCCAAATTAGATAGCACTCAAATTTTAGACCT-AGTTTAGCTGGTATTTTATGCCTAG
1 ACCTAAACCCAAATTAGATAGCACTCAAATTTTA-ACCTGAGTTTAGCTGGCACTTTAAGCCTAG
24331715 ATTAGTTAAC
65 ATTAGTTAAC
* * * * *
24331725 ACCTAAACCCAAATTAGTTGGCA-TCCAAATTTTAAGCTGAGTTTAGTTGGCACTTTAAGTCTAG
1 ACCTAAACCCAAATTAGATAGCACT-CAAATTTTAACCTGAGTTTAGCTGGCACTTTAAGCCTAG
24331789 ATTAG
65 ATTAG
24331794 CTGGCACTTA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
73 4 0.07
74 54 0.93
ACGTcount: A:0.32, C:0.18, G:0.16, T:0.34
Consensus pattern (74 bp):
ACCTAAACCCAAATTAGATAGCACTCAAATTTTAACCTGAGTTTAGCTGGCACTTTAAGCCTAGA
TTAGTTAAC
Found at i:24331816 original size:33 final size:33
Alignment explanation
Indices: 24331779--24331850 Score: 90
Period size: 33 Copynumber: 2.2 Consensus size: 33
24331769 AGTTGGCACT
* **
24331779 TTAAGTCTAGATTAGCTGGCACTTAGATGAGAA
1 TTAAGCCTAGATTAGCTGGCACCCAGATGAGAA
* * *
24331812 TTAAGCCTAGTTTAGCTGGTACCCAGATGAGAT
1 TTAAGCCTAGATTAGCTGGCACCCAGATGAGAA
24331845 TTAAGC
1 TTAAGC
24331851 TCAGTTTAAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.31
Consensus pattern (33 bp):
TTAAGCCTAGATTAGCTGGCACCCAGATGAGAA
Found at i:24331943 original size:96 final size:97
Alignment explanation
Indices: 24331812--24331989 Score: 243
Period size: 96 Copynumber: 1.8 Consensus size: 97
24331802 TAGATGAGAA
* *** * *
24331812 TTAAGCCTAGTTTAGCTGGTACCCAGATGAGATTTAAGC-TCAGTTTAACTAGCAACCAAATTGA
1 TTAAGCCTAGTTTAACTACCACCCAGATGAGATTTAAGCAT-AGTATAACTAGCAACCAAATTAA
24331876 GA-TTTAAGCCCAGTTTAGTTCCAAATTGAGTT
65 GATTTTAAGCCCAGTTTAGTTCCAAATTGAGTT
* * *
24331908 TTAAGCCTAGTTTAACTACCACCTAGATGAGATTTAAGCATAGTATAGCTAGCACCCAAATTAAG
1 TTAAGCCTAGTTTAACTACCACCCAGATGAGATTTAAGCATAGTATAACTAGCAACCAAATTAAG
*
24331973 ATTTTAAGCCTAGTTTA
66 ATTTTAAGCCCAGTTTA
24331990 ACTAGCACCC
Statistics
Matches: 70, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
96 55 0.79
97 15 0.21
ACGTcount: A:0.33, C:0.18, G:0.17, T:0.32
Consensus pattern (97 bp):
TTAAGCCTAGTTTAACTACCACCCAGATGAGATTTAAGCATAGTATAACTAGCAACCAAATTAAG
ATTTTAAGCCCAGTTTAGTTCCAAATTGAGTT
Found at i:24332014 original size:35 final size:34
Alignment explanation
Indices: 24331806--24332011 Score: 176
Period size: 33 Copynumber: 6.2 Consensus size: 34
24331796 GGCACTTAGA
* * * * *
24331806 TGAGAATTAAGCCTAGTTTAGCTGGTACCCAGA-
1 TGAGATTTAAGCCTAGTTTAACTAGCACCCAAAT
*
24331839 TGAGATTTAAG-CTCAGTTTAACTAGCAACCAAAT
1 TGAGATTTAAGCCT-AGTTTAACTAGCACCCAAAT
* **
24331873 TGAGATTTAAGCCCAG-TT---TAG-TTCCAAAT
1 TGAGATTTAAGCCTAGTTTAACTAGCACCCAAAT
* * * *
24331902 TGAGTTTTAAGCCTAGTTTAACTACCACCTAGA-
1 TGAGATTTAAGCCTAGTTTAACTAGCACCCAAAT
* * *
24331935 TGAGATTTAAGCATAGTATAGCTAGCACCCAAAT
1 TGAGATTTAAGCCTAGTTTAACTAGCACCCAAAT
*
24331969 TAAGATTTTAAGCCTAGTTTAACTAGCACCCAAAT
1 TGAGA-TTTAAGCCTAGTTTAACTAGCACCCAAAT
*
24332004 TAAGATTT
1 TGAGATTT
24332012 TAAATGCAGT
Statistics
Matches: 136, Mismatches: 27, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
29 20 0.15
30 5 0.04
32 2 0.01
33 54 0.40
34 23 0.17
35 32 0.24
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Consensus pattern (34 bp):
TGAGATTTAAGCCTAGTTTAACTAGCACCCAAAT
Found at i:24332849 original size:46 final size:46
Alignment explanation
Indices: 24332782--24332898 Score: 162
Period size: 46 Copynumber: 2.5 Consensus size: 46
24332772 AGACAGAATA
* *
24332782 TTTTAAATTTATTTTCAAAAGTTATTGAATCTTTTCCTGAAGAAAC
1 TTTTAAATTTATTTTCAAAAGTTATTGAATCTTTACCTAAAGAAAC
* * * * *
24332828 TTTTAAATTTATTTTTAAAAGTTGTTGAGTCTTTACTTAAAGGAAC
1 TTTTAAATTTATTTTCAAAAGTTATTGAATCTTTACCTAAAGAAAC
*
24332874 TTGTAAATTTATTTTCAAAAGTTAT
1 TTTTAAATTTATTTTCAAAAGTTAT
24332899 GGAAACCTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
46 61 1.00
ACGTcount: A:0.34, C:0.08, G:0.10, T:0.48
Consensus pattern (46 bp):
TTTTAAATTTATTTTCAAAAGTTATTGAATCTTTACCTAAAGAAAC
Found at i:24332993 original size:42 final size:42
Alignment explanation
Indices: 24332939--24333018 Score: 108
Period size: 42 Copynumber: 1.9 Consensus size: 42
24332929 TTAATGTAAA
* *
24332939 AAAAATCTCAAAAATTTGAAAAAGAAAAAATAAAAAAAAACTT
1 AAAAATCTCAAAAAATTCAAAAAGAAAAAA-AAAAAAAAACTT
**
24332982 AAAAAT-TCAAAAAATTCAAAAAGTTAAAAAAAAAAAA
1 AAAAATCTCAAAAAATTCAAAAAGAAAAAAAAAAAAAA
24333019 GAGAAAAGAG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
41 8 0.24
42 19 0.58
43 6 0.18
ACGTcount: A:0.72, C:0.06, G:0.04, T:0.17
Consensus pattern (42 bp):
AAAAATCTCAAAAAATTCAAAAAGAAAAAAAAAAAAAAACTT
Found at i:24333013 original size:18 final size:17
Alignment explanation
Indices: 24332972--24333013 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 17
24332962 GAAAAAATAA
24332972 AAAAAAACTTAAAAATT
1 AAAAAAACTTAAAAATT
*
24332989 CAAAAAA-TTCAAAAAGTT
1 AAAAAAACTT-AAAAA-TT
24333007 AAAAAAA
1 AAAAAAA
24333014 AAAAAGAGAA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
16 2 0.10
17 11 0.52
18 8 0.38
ACGTcount: A:0.71, C:0.07, G:0.02, T:0.19
Consensus pattern (17 bp):
AAAAAAACTTAAAAATT
Found at i:24333033 original size:23 final size:23
Alignment explanation
Indices: 24333022--24333068 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
24333012 AAAAAAAGAG
24333022 AAAAGAGCAAAACAAAAAACAAA
1 AAAAGAGCAAAACAAAAAACAAA
* *
24333045 AAAAGAGCAAAAGAATAAACAAA
1 AAAAGAGCAAAACAAAAAACAAA
24333068 A
1 A
24333069 CAAAAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.77, C:0.11, G:0.11, T:0.02
Consensus pattern (23 bp):
AAAAGAGCAAAACAAAAAACAAA
Found at i:24333048 original size:30 final size:29
Alignment explanation
Indices: 24333007--24333078 Score: 94
Period size: 30 Copynumber: 2.4 Consensus size: 29
24332997 TCAAAAAGTT
24333007 AAAAAAAAAAAAGAG-AAAAGAGCA-AAACA
1 AAAAAAAAAAAAGAGCAAAAGA--ATAAACA
24333036 AAAAACAAAAAAAGAGCAAAAGAATAAACA
1 AAAAA-AAAAAAAGAGCAAAAGAATAAACA
24333066 AAACAAAAAAAAA
1 AAA-AAAAAAAAA
24333079 CTTTTGAAAA
Statistics
Matches: 39, Mismatches: 0, Indels: 7
0.85 0.00 0.15
Matches are distributed among these distances:
29 6 0.15
30 25 0.64
31 8 0.21
ACGTcount: A:0.81, C:0.08, G:0.10, T:0.01
Consensus pattern (29 bp):
AAAAAAAAAAAAGAGCAAAAGAATAAACA
Found at i:24338415 original size:22 final size:22
Alignment explanation
Indices: 24338390--24338454 Score: 66
Period size: 20 Copynumber: 3.1 Consensus size: 22
24338380 GTAGTGGATA
24338390 ATTAATAATTTAGTAATTAATC
1 ATTAATAATTTAGTAATTAATC
*
24338412 ATTAAAAATTTA--AATGTAATC
1 ATTAATAATTTAGTAAT-TAATC
* *
24338433 AGT-ATAACTTAGTAA-TAATC
1 ATTAATAATTTAGTAATTAATC
24338453 AT
1 AT
24338455 CGATAACTTA
Statistics
Matches: 35, Mismatches: 5, Indels: 8
0.73 0.10 0.17
Matches are distributed among these distances:
20 15 0.43
21 7 0.20
22 13 0.37
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (22 bp):
ATTAATAATTTAGTAATTAATC
Found at i:24338504 original size:22 final size:23
Alignment explanation
Indices: 24338456--24338513 Score: 57
Period size: 22 Copynumber: 2.6 Consensus size: 23
24338446 AATAATCATC
* *
24338456 GATAACTTAATAATAAATTAGTA
1 GATAACTTAATAATAAATGAGAA
*
24338479 -ATAACTTAATAGTAAATGA-AA
1 GATAACTTAATAATAAATGAGAA
* *
24338500 GATAATTTAGTAAT
1 GATAACTTAATAAT
24338514 CAATAGTTGA
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
21 1 0.04
22 27 0.96
ACGTcount: A:0.52, C:0.03, G:0.10, T:0.34
Consensus pattern (23 bp):
GATAACTTAATAATAAATGAGAA
Found at i:24338655 original size:22 final size:21
Alignment explanation
Indices: 24338630--24338735 Score: 77
Period size: 22 Copynumber: 4.8 Consensus size: 21
24338620 ACTAATTAAG
24338630 GATAACTTAATAAAAAATAAGT
1 GATAACTTAATAAAAAATAA-T
* * * * *
24338652 GATAAATTAGTAATTAATTATT
1 GATAACTTAATAA-AAAATAAT
* *
24338674 GATAACTTAGTAATAAATCAAT
1 GATAACTTAATAAAAAAT-AAT
* *
24338696 GATAACTTAATAGTAAATTAAT
1 GATAACTTAATA-AAAAATAAT
*
24338718 GATAATTTAATAATAAAA
1 GATAACTTAATAA-AAAA
24338736 CAATTTCAGT
Statistics
Matches: 65, Mismatches: 15, Indels: 8
0.74 0.17 0.09
Matches are distributed among these distances:
21 4 0.06
22 54 0.83
23 7 0.11
ACGTcount: A:0.53, C:0.04, G:0.08, T:0.35
Consensus pattern (21 bp):
GATAACTTAATAAAAAATAAT
Found at i:24338678 original size:44 final size:44
Alignment explanation
Indices: 24338623--24338739 Score: 121
Period size: 44 Copynumber: 2.7 Consensus size: 44
24338613 GCATAGTACT
* * *
24338623 AATTAAGGATAACTTAATAAAAAAT-AAGTGATAAATTAGTAATT
1 AATTAATGATAACTTAATAAAAAATCAA-TGATAAATTAATAATA
* * * * *
24338667 AATTATTGATAACTTAGTAATAAATCAATGATAACTTAATAGTA
1 AATTAATGATAACTTAATAAAAAATCAATGATAAATTAATAATA
*
24338711 AATTAATGATAATTTAATAATAAAA-CAAT
1 AATTAATGATAACTTAATAA-AAAATCAAT
24338740 TTCAGTTTAA
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
44 54 0.92
45 5 0.08
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.34
Consensus pattern (44 bp):
AATTAATGATAACTTAATAAAAAATCAATGATAAATTAATAATA
Found at i:24338700 original size:11 final size:11
Alignment explanation
Indices: 24338623--24338734 Score: 57
Period size: 11 Copynumber: 10.2 Consensus size: 11
24338613 GCATAGTACT
*
24338623 AATTAAGGATA
1 AATTAATGATA
* *
24338634 ACTTAAT-AAA
1 AATTAATGATA
*
24338644 AAATAAGTGATA
1 AATTAA-TGATA
* * *
24338656 AATTAGTAATT
1 AATTAATGATA
*
24338667 AATTATTGATA
1 AATTAATGATA
* * *
24338678 ACTTAGTAATA
1 AATTAATGATA
*
24338689 AATCAATGATA
1 AATTAATGATA
*
24338700 ACTTAAT-AGTA
1 AATTAATGA-TA
24338711 AATTAATGATA
1 AATTAATGATA
* *
24338722 ATTTAATAATA
1 AATTAATGATA
24338733 AA
1 AA
24338735 ACAATTTCAG
Statistics
Matches: 71, Mismatches: 26, Indels: 8
0.68 0.25 0.08
Matches are distributed among these distances:
10 7 0.10
11 57 0.80
12 7 0.10
ACGTcount: A:0.53, C:0.04, G:0.09, T:0.35
Consensus pattern (11 bp):
AATTAATGATA
Found at i:24338792 original size:22 final size:22
Alignment explanation
Indices: 24338748--24338836 Score: 81
Period size: 22 Copynumber: 4.0 Consensus size: 22
24338738 ATTTCAGTTT
*
24338748 AATAATAATTAATTGATAGTAGTA
1 AATAATAAATAATT--TAGTAGTA
24338772 AATAATAAATAATTTAGTAGTA
1 AATAATAAATAATTTAGTAGTA
* * * *
24338794 AATTAAT-TATAAATTATTCGTA
1 AA-TAATAAATAATTTAGTAGTA
**
24338816 AATAATTGATAATTTAGTAGT
1 AATAATAAATAATTTAGTAGT
24338837 TATTTATTGA
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
21 4 0.07
22 33 0.61
23 4 0.07
24 13 0.24
ACGTcount: A:0.48, C:0.01, G:0.10, T:0.40
Consensus pattern (22 bp):
AATAATAAATAATTTAGTAGTA
Found at i:24339078 original size:22 final size:22
Alignment explanation
Indices: 24339053--24339101 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
24339043 AACATGATAA
24339053 TAAAT-ATATAAAAATATAGTAG
1 TAAATCAT-TAAAAATATAGTAG
* * *
24339075 TAAATCATTGATAATTTAGTAG
1 TAAATCATTAAAAATATAGTAG
24339097 TAAAT
1 TAAAT
24339102 TGATAACTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
22 21 0.91
23 2 0.09
ACGTcount: A:0.51, C:0.02, G:0.10, T:0.37
Consensus pattern (22 bp):
TAAATCATTAAAAATATAGTAG
Found at i:24339120 original size:19 final size:19
Alignment explanation
Indices: 24339081--24339120 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
24339071 GTAGTAAATC
* * *
24339081 ATTGATAATTTAGTAGTAA
1 ATTGATAACTTAATAGCAA
24339100 ATTGATAACTTAATAGCAA
1 ATTGATAACTTAATAGCAA
24339119 AT
1 AT
24339121 CACTAATAAT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (19 bp):
ATTGATAACTTAATAGCAA
Found at i:24339163 original size:22 final size:22
Alignment explanation
Indices: 24339104--24339188 Score: 91
Period size: 22 Copynumber: 3.9 Consensus size: 22
24339094 TAGTAAATTG
* *
24339104 ATAACTTAATAGCAAATCACTA
1 ATAACTTAATAGTAAATTACTA
*
24339126 ATAA-TATAATAATAAATTACTA
1 ATAACT-TAATAGTAAATTACTA
* *
24339148 ATAACTTAATTGTAAATTACTG
1 ATAACTTAATAGTAAATTACTA
* *
24339170 ATAATTTAGTAGTAAATTA
1 ATAACTTAATAGTAAATTA
24339189 GTTAATTATT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
21 1 0.02
22 50 0.96
23 1 0.02
ACGTcount: A:0.49, C:0.08, G:0.06, T:0.36
Consensus pattern (22 bp):
ATAACTTAATAGTAAATTACTA
Found at i:24339186 original size:44 final size:43
Alignment explanation
Indices: 24338780--24339188 Score: 136
Period size: 44 Copynumber: 9.4 Consensus size: 43
24338770 TAAATAATAA
* * * * * *
24338780 ATAATTTAGTAGTAAATTAATTATAAATTATTCGTAAATAATTG
1 ATAATTTAGTAGTAAATT-ATAATAACTTAATAGTAAATCACTG
* * * * * *
24338824 ATAATTTAGTAGTTATTTATTGA-AATTTAAAAGTAAATCAAT-
1 ATAATTTAGTAGTAAATTA-TAATAACTTAATAGTAAATCACTG
* * * * * *
24338866 ATAATTTAATAGTAAATCATCAATAACATAATAATTAATCAATG
1 ATAATTTAGTAGTAAATTAT-AATAACTTAATAGTAAATCACTG
* * * * * * * *
24338910 ATAACTTAATATTAAATTATGCATAATTTAATA-TAAAACAATA
1 ATAATTTAGTAGTAAATTAT-AATAACTTAATAGTAAATCACTG
* * * * * * * * *
24338953 ATTACTT-GTTAGTGAGTCATAGATAATTTAATGGTATATCAGTG
1 ATAATTTAG-TAGTAAATTATA-ATAACTTAATAGTAAATCACTG
* * * * * *
24338997 ATAATTTTGT-GATACATAATTAA-AAATTAAGTAGTAAATAAATG
1 ATAATTTAGTAG-TAAATTA-TAATAACTTAA-TAGTAAATCACTG
** * * * *
24339041 ATAACAT-GATAATAAATATATAA-AAATATAGTAGTAAATCATTG
1 ATAATTTAG-TAGTAAAT-TATAATAACT-TAATAGTAAATCACTG
* * *
24339085 ATAATTTAGTAGTAAA-T-TGATAACTTAATAGCAAATCACTA
1 ATAATTTAGTAGTAAATTATAATAACTTAATAGTAAATCACTG
* * * * *
24339126 ATAATATAATAATAAATTACTAATAACTTAATTGTAAATTACTG
1 ATAATTTAGTAGTAAATTA-TAATAACTTAATAGTAAATCACTG
24339170 ATAATTTAGTAGTAAATTA
1 ATAATTTAGTAGTAAATTA
24339189 GTTAATTATT
Statistics
Matches: 265, Mismatches: 80, Indels: 40
0.69 0.21 0.10
Matches are distributed among these distances:
41 28 0.11
42 21 0.08
43 66 0.25
44 143 0.54
45 7 0.03
ACGTcount: A:0.48, C:0.05, G:0.09, T:0.38
Consensus pattern (43 bp):
ATAATTTAGTAGTAAATTATAATAACTTAATAGTAAATCACTG
Found at i:24339546 original size:11 final size:11
Alignment explanation
Indices: 24339530--24339617 Score: 79
Period size: 11 Copynumber: 8.1 Consensus size: 11
24339520 AGTTAATAAT
*
24339530 TAATAATTTAA
1 TAATAAATTAA
24339541 TAATAAATTAA
1 TAATAAATTAA
* *
24339552 TGATAACTTAA
1 TAATAAATTAA
* *
24339563 TAGTAAATTAG
1 TAATAAATTAA
* *
24339574 TGATAACTTAA
1 TAATAAATTAA
* *
24339585 TAGTAAATTAG
1 TAATAAATTAA
*
24339596 TAATAACTTAA
1 TAATAAATTAA
24339607 TAAT-AATTAA
1 TAATAAATTAA
24339617 T
1 T
24339618 TGATAAATTT
Statistics
Matches: 58, Mismatches: 19, Indels: 1
0.74 0.24 0.01
Matches are distributed among these distances:
10 6 0.10
11 52 0.90
ACGTcount: A:0.51, C:0.03, G:0.07, T:0.39
Consensus pattern (11 bp):
TAATAAATTAA
Found at i:24339562 original size:22 final size:22
Alignment explanation
Indices: 24339532--24339623 Score: 114
Period size: 22 Copynumber: 4.2 Consensus size: 22
24339522 TTAATAATTA
*
24339532 ATAATTTAATAATAAATTAATG
1 ATAACTTAATAATAAATTAATG
* *
24339554 ATAACTTAATAGTAAATTAGTG
1 ATAACTTAATAATAAATTAATG
* * *
24339576 ATAACTTAATAGTAAATTAGTA
1 ATAACTTAATAATAAATTAATG
24339598 ATAACTTAATAAT-AATTAATTG
1 ATAACTTAATAATAAATTAA-TG
24339620 ATAA
1 ATAA
24339624 ATTTAGTAGT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
21 5 0.08
22 57 0.92
ACGTcount: A:0.51, C:0.03, G:0.08, T:0.38
Consensus pattern (22 bp):
ATAACTTAATAATAAATTAATG
Found at i:24339585 original size:44 final size:44
Alignment explanation
Indices: 24339508--24339608 Score: 121
Period size: 44 Copynumber: 2.3 Consensus size: 44
24339498 ATAAAAAAAG
* * * *
24339508 TGATAACTTAGTAGTTAATAATTAATAATTTAATAATAAATTAA
1 TGATAACTTAATAGTAAATAAGTAATAACTTAATAATAAATTAA
* * * *
24339552 TGATAACTTAATAGTAAATTAGTGATAACTTAATAGTAAATTAG
1 TGATAACTTAATAGTAAATAAGTAATAACTTAATAATAAATTAA
*
24339596 TAATAACTTAATA
1 TGATAACTTAATA
24339609 ATAATTAATT
Statistics
Matches: 48, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
44 48 1.00
ACGTcount: A:0.49, C:0.04, G:0.09, T:0.39
Consensus pattern (44 bp):
TGATAACTTAATAGTAAATAAGTAATAACTTAATAATAAATTAA
Found at i:24339600 original size:66 final size:67
Alignment explanation
Indices: 24339506--24339671 Score: 185
Period size: 66 Copynumber: 2.5 Consensus size: 67
24339496 TAATAAAAAA
* * *
24339506 AGTGATAACTTAGTAGTTAATAATTAATAATTTAATAATAAATTAA-TGAT-AACTTAATAGTAA
1 AGTGATAACTTAATAGTAAATAAATAATAATTTAATAAT-AATTAATTGATAAACTTAATAGTAA
*
24339569 ATT
65 ATC
* * * * *
24339572 AGTGATAACTTAATAGTAAATTAGTAATAACTTAATAATAATTAATTGATAAATTTAGTAGTAAA
1 AGTGATAACTTAATAGTAAATAAATAATAATTTAATAATAATTAATTGATAAACTTAATAGTAAA
24339637 TC
66 TC
* ** *
24339639 A-TAATAACCCAATAGTAAATCAATAATAATTTA
1 AGTGATAACTTAATAGTAAATAAATAATAATTTA
24339672 GTTATTAATT
Statistics
Matches: 84, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
65 6 0.07
66 64 0.76
67 14 0.17
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.37
Consensus pattern (67 bp):
AGTGATAACTTAATAGTAAATAAATAATAATTTAATAATAATTAATTGATAAACTTAATAGTAAA
TC
Found at i:24339622 original size:44 final size:44
Alignment explanation
Indices: 24339526--24339646 Score: 129
Period size: 44 Copynumber: 2.7 Consensus size: 44
24339516 TAGTAGTTAA
* * * *
24339526 TAATTAATAATTTAATAATAAATTAATGATAACTTAATAGTAAAT
1 TAATTGATAATTTAATAGTAAATT-ATAATAACTTAATAATAAAT
* *
24339571 T-AGTGATAACTTAATAGTAAATTAGTAATAACTTAATAAT-AAT
1 TAATTGATAATTTAATAGTAAATTA-TAATAACTTAATAATAAAT
* *
24339614 TAATTGATAAATTTAGTAGTAAATCATAATAAC
1 TAATTGAT-AATTTAATAGTAAATTATAATAAC
24339647 CCAATAGTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 7
0.79 0.12 0.09
Matches are distributed among these distances:
43 5 0.08
44 43 0.68
45 15 0.24
ACGTcount: A:0.50, C:0.04, G:0.07, T:0.38
Consensus pattern (44 bp):
TAATTGATAATTTAATAGTAAATTATAATAACTTAATAATAAAT
Found at i:24339720 original size:21 final size:22
Alignment explanation
Indices: 24339623--24339721 Score: 60
Period size: 22 Copynumber: 4.6 Consensus size: 22
24339613 TTAATTGATA
*
24339623 AATTTAGTAGTAAATC-ATAAT
1 AATTTAGTAATAAATCAATAAT
*** * *
24339644 AACCCAATAGTAAATCAATAAT
1 AATTTAGTAATAAATCAATAAT
* * * *
24339666 AATTTAGTTATTAATTATTGAA-
1 AATTTAGTAATAAATCAAT-AAT
**
24339688 AATTTAAAAATAAATCAAT-AT
1 AATTTAGTAATAAATCAATAAT
24339709 AATTTAGTAATAA
1 AATTTAGTAATAA
24339722 TTAATTATCA
Statistics
Matches: 54, Mismatches: 21, Indels: 6
0.67 0.26 0.07
Matches are distributed among these distances:
20 1 0.02
21 23 0.43
22 28 0.52
23 2 0.04
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.36
Consensus pattern (22 bp):
AATTTAGTAATAAATCAATAAT
Found at i:24339750 original size:46 final size:43
Alignment explanation
Indices: 24339649--24339753 Score: 113
Period size: 46 Copynumber: 2.3 Consensus size: 43
24339639 ATAATAACCC
* *
24339649 AATAGTAAATCAATAATAATTTAGTTATTAATTATTGAAAATTT
1 AATAGTAAATCAAT-ATAATTTAGTTATTAATTATTCAAAACTT
* *
24339693 AAAAATAAATCAATATAATTTAGTAATAATTAATTA-TCAATAACTT
1 AATAGTAAATCAATATAATTTAGT--T-ATTAATTATTCAA-AACTT
*
24339739 AATAGTTAATCAATA
1 AATAGTAAATCAATA
24339754 ATACCTTAAT
Statistics
Matches: 50, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
43 10 0.20
44 12 0.24
45 4 0.08
46 24 0.48
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.39
Consensus pattern (43 bp):
AATAGTAAATCAATATAATTTAGTTATTAATTATTCAAAACTT
Found at i:24339942 original size:43 final size:44
Alignment explanation
Indices: 24339895--24339978 Score: 107
Period size: 43 Copynumber: 1.9 Consensus size: 44
24339885 TAATAATGTA
24339895 ATAAATGCATAATAACATAGTAATAAATCATTAA-AATTTATAT
1 ATAAATGCATAATAACATAGTAATAAATCATTAATAATTTATAT
*** * * *
24339938 ATAAATTTTTAATAACTTGGTAGTAAATCATTAATAATTTA
1 ATAAATGCATAATAACATAGTAATAAATCATTAATAATTTA
24339979 GTTGTAAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
43 28 0.82
44 6 0.18
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (44 bp):
ATAAATGCATAATAACATAGTAATAAATCATTAATAATTTATAT
Found at i:24339985 original size:22 final size:22
Alignment explanation
Indices: 24339918--24339987 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
24339908 AACATAGTAA
*
24339918 TAAATCATTAA-AATTTA-TATA
1 TAAATCATTAATAATTTAGT-TG
** * * *
24339939 TAAATTTTTAATAACTTGGTAG
1 TAAATCATTAATAATTTAGTTG
24339961 TAAATCATTAATAATTTAGTTG
1 TAAATCATTAATAATTTAGTTG
24339983 TAAAT
1 TAAAT
24339988 AAGTGAAAAT
Statistics
Matches: 36, Mismatches: 11, Indels: 3
0.72 0.22 0.06
Matches are distributed among these distances:
21 9 0.25
22 26 0.72
23 1 0.03
ACGTcount: A:0.44, C:0.04, G:0.07, T:0.44
Consensus pattern (22 bp):
TAAATCATTAATAATTTAGTTG
Found at i:24340040 original size:22 final size:21
Alignment explanation
Indices: 24340010--24340234 Score: 106
Period size: 22 Copynumber: 10.5 Consensus size: 21
24340000 AGTAGCAAAT
*
24340010 TAGTTAATCATTGATAACTTTA
1 TAGTAAATCATTGATAA-TTTA
*
24340032 TAGTAAATCATT--T-A-TAA
1 TAGTAAATCATTGATAATTTA
*
24340049 TAGTATATCAGTT-ATAACTTTA
1 TAGTAAATCA-TTGATAA-TTTA
** *
24340071 TAACAAATTATT-AGTAATTTAA
1 TAGTAAATCATTGA-TAATTT-A
* **
24340093 TAGTAAATTATCAATAATTTA
1 TAGTAAATCATTGATAATTTA
*
24340114 GAAGTAAATCAGTT-ATAATTTA
1 -TAGTAAATCA-TTGATAATTTA
*
24340136 GTAGTAAATCATTAAT-ATATTA
1 -TAGTAAATCATTGATAAT-TTA
* **
24340158 GTAGTAAATCAATGCGAATTTAA
1 -TAGTAAATCATTGATAATTT-A
* *
24340181 TAGTAAATGATTGAAAATTTA
1 TAGTAAATCATTGATAATTTA
* * *
24340202 TCAGTATATAATTGATAGTTTAA
1 T-AGTAAATCATTGATAATTT-A
24340225 TAGTAAATCA
1 TAGTAAATCA
24340235 CTAATAACAT
Statistics
Matches: 158, Mismatches: 29, Indels: 32
0.72 0.13 0.15
Matches are distributed among these distances:
17 11 0.07
18 2 0.01
19 2 0.01
20 2 0.01
21 13 0.08
22 121 0.77
23 7 0.04
ACGTcount: A:0.44, C:0.06, G:0.10, T:0.40
Consensus pattern (21 bp):
TAGTAAATCATTGATAATTTA
Found at i:24340053 original size:17 final size:17
Alignment explanation
Indices: 24340031--24340065 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
24340021 TGATAACTTT
*
24340031 ATAGTAAATCATTTATA
1 ATAGTAAATCAGTTATA
*
24340048 ATAGTATATCAGTTATA
1 ATAGTAAATCAGTTATA
24340065 A
1 A
24340066 CTTTATAACA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.46, C:0.06, G:0.09, T:0.40
Consensus pattern (17 bp):
ATAGTAAATCAGTTATA
Found at i:24340133 original size:44 final size:44
Alignment explanation
Indices: 24340085--24340188 Score: 120
Period size: 44 Copynumber: 2.4 Consensus size: 44
24340075 AAATTATTAG
* * *
24340085 TAATTTAATAGTAAATTATCAATA-ATTTAGAAGTAAATCAGTTA
1 TAATTTAATAGTAAATCATCAATATA-TTAGAAGTAAATCAATGA
* * * *
24340129 TAATTTAGTAGTAAATCATTAATATATTAGTAGTAAATCAATGC
1 TAATTTAATAGTAAATCATCAATATATTAGAAGTAAATCAATGA
*
24340173 GAATTTAATAGTAAAT
1 TAATTTAATAGTAAAT
24340189 GATTGAAAAT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
44 49 0.98
45 1 0.02
ACGTcount: A:0.46, C:0.05, G:0.11, T:0.38
Consensus pattern (44 bp):
TAATTTAATAGTAAATCATCAATATATTAGAAGTAAATCAATGA
Found at i:24340549 original size:22 final size:22
Alignment explanation
Indices: 24340523--24340569 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 22
24340513 ATGATGATAC
*
24340523 AAATTTTATCCATAA-TTACCAA
1 AAATTATAT-CATAAGTTACCAA
*
24340545 AAATTATATCATAAGTTATCAA
1 AAATTATATCATAAGTTACCAA
24340567 AAA
1 AAA
24340570 ATTACAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
21 5 0.23
22 17 0.77
ACGTcount: A:0.51, C:0.13, G:0.02, T:0.34
Consensus pattern (22 bp):
AAATTATATCATAAGTTACCAA
Found at i:24340645 original size:21 final size:21
Alignment explanation
Indices: 24340561--24340661 Score: 78
Period size: 21 Copynumber: 4.6 Consensus size: 21
24340551 TATCATAAGT
*
24340561 TATCAAAAAATTACAAAAATTA
1 TATC-AAAGATTACAAAAATTA
*
24340583 TATCAAGAGATTACTAAAATTTTA
1 TATCAA-AGATTAC-AAAA-ATTA
** * *
24340607 TAAAAAAAATTACAAAAATTG
1 TATCAAAGATTACAAAAATTA
* *
24340628 TATCAATGATTACTAAAATTA
1 TATCAAAGATTACAAAAATTA
24340649 TATCATAA-ATTAC
1 TATCA-AAGATTAC
24340662 CAAATTGTCT
Statistics
Matches: 61, Mismatches: 14, Indels: 9
0.73 0.17 0.11
Matches are distributed among these distances:
21 29 0.48
22 15 0.25
23 10 0.16
24 7 0.11
ACGTcount: A:0.54, C:0.09, G:0.04, T:0.33
Consensus pattern (21 bp):
TATCAAAGATTACAAAAATTA
Found at i:24341857 original size:61 final size:61
Alignment explanation
Indices: 24341750--24341877 Score: 211
Period size: 61 Copynumber: 2.1 Consensus size: 61
24341740 AGTACACAAC
*
24341750 TAAGATAGCTGGCTGTAATCTGTATTGGCATCTGCGGAATTATTTATATCACAGTTTCAAG
1 TAAGATAGCTGGCTGTAATCTGTATTGGCATCTGCAGAATTATTTATATCACAGTTTCAAG
* * * *
24341811 TGAGATGGCTGGCTGTAATCTGTATTGGCATCTGTAGAATTGTTTATATCACAGTTTCAAG
1 TAAGATAGCTGGCTGTAATCTGTATTGGCATCTGCAGAATTATTTATATCACAGTTTCAAG
24341872 TAAGAT
1 TAAGAT
24341878 TTTTGCAACA
Statistics
Matches: 61, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 61 1.00
ACGTcount: A:0.27, C:0.13, G:0.23, T:0.37
Consensus pattern (61 bp):
TAAGATAGCTGGCTGTAATCTGTATTGGCATCTGCAGAATTATTTATATCACAGTTTCAAG
Found at i:24350652 original size:32 final size:32
Alignment explanation
Indices: 24350605--24350665 Score: 86
Period size: 32 Copynumber: 1.9 Consensus size: 32
24350595 CATTTTCTTA
* *
24350605 TTTTAATTAACTTTTATTTTGTTTAATAGTTT
1 TTTTAATTAACTTTTATTTTATGTAATAGTTT
* *
24350637 TTTTAGTTAATTTTTATTTTATGTAATAG
1 TTTTAATTAACTTTTATTTTATGTAATAG
24350666 AAAAAAGAAA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 25 1.00
ACGTcount: A:0.26, C:0.02, G:0.08, T:0.64
Consensus pattern (32 bp):
TTTTAATTAACTTTTATTTTATGTAATAGTTT
Found at i:24350656 original size:16 final size:16
Alignment explanation
Indices: 24350602--24350657 Score: 53
Period size: 16 Copynumber: 3.5 Consensus size: 16
24350592 CATCATTTTC
* *
24350602 TTATTTTAATTAACTT
1 TTATTTTAGTTAATTT
*
24350618 TTATTTT-GTTTAATAGT
1 TTATTTTAG-TTAAT-TT
24350635 TT-TTTTAGTTAATTT
1 TTATTTTAGTTAATTT
24350650 TTATTTTA
1 TTATTTTA
24350658 TGTAATAGAA
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
15 3 0.09
16 25 0.78
17 4 0.12
ACGTcount: A:0.25, C:0.02, G:0.05, T:0.68
Consensus pattern (16 bp):
TTATTTTAGTTAATTT
Found at i:24352552 original size:48 final size:48
Alignment explanation
Indices: 24352494--24352802 Score: 176
Period size: 48 Copynumber: 6.5 Consensus size: 48
24352484 TTTCCTTTCA
* * *
24352494 TAGAGGCTTGACAACTTT-AAACTCCAAATGATGAAAGGCTCATCTTAT
1 TAGAGGCTTGACAACTTTAAAAAT-CAAATAATGAAAGGCTCATCTCAT
* * * *
24352542 TAGAGACTTGATAACTTTAAAAATGAAATAATGAAAGGCTCTTCTCAT
1 TAGAGGCTTGACAACTTTAAAAATCAAATAATGAAAGGCTCATCTCAT
* * * * * *
24352590 CAGAGGCTTGACAACTTCAAAAAATTTAACTAA--AAA-GCTCCTCTTAT
1 TAGAGGCTTGACAACTT-TAAAAA-TCAAATAATGAAAGGCTCATCTCAT
* * *
24352637 TAGAGGCTTGATAACTTTAAAAAATTCTGACTAA--AAA-GCTTC-TCTCAT
1 TAGAGGCTTGACAACTTT-AAAAA-TC-AAATAATGAAAGGC-TCATCTCAT
* * * * * * *
24352685 TAAAGGCTTAACAACTTT-AAAA-CAATTGACTGAAAAGCTCTTATCAT
1 TAGAGGCTTGACAACTTTAAAAATCAAAT-AATGAAAGGCTCATCTCAT
* * * *
24352732 TAGAGGCTTGACAACTTTAAAAA--AATTTGAATG-AAGAGTTCCTTTCAT
1 TAGAGGCTTGACAACTTTAAAAATCAA-AT-AATGAAAG-GCTCATCTCAT
*
24352780 TAGAGGCTTGACAACTTAAAAAA
1 TAGAGGCTTGACAACTTTAAAAA
24352803 ATTTGACTGA
Statistics
Matches: 211, Mismatches: 36, Indels: 28
0.77 0.13 0.10
Matches are distributed among these distances:
43 2 0.01
44 2 0.01
46 9 0.04
47 58 0.27
48 123 0.58
49 11 0.05
50 6 0.03
ACGTcount: A:0.40, C:0.16, G:0.14, T:0.30
Consensus pattern (48 bp):
TAGAGGCTTGACAACTTTAAAAATCAAATAATGAAAGGCTCATCTCAT
Found at i:24352647 original size:95 final size:95
Alignment explanation
Indices: 24352525--24352849 Score: 296
Period size: 95 Copynumber: 3.4 Consensus size: 95
24352515 CTCCAAATGA
* * *
24352525 TGAAAGGCTCATCTTATTAGAGACTTGATAACTTTAAAAATGAAATAATGAAAGGCTCTTCTCAT
1 TGAAAAGCTCCTCTTATTAGAGGCTTGATAACTTTAAAAATGAAATAATGAAAGGCTCTTCTCAT
* * *
24352590 CAGAGGCTTGACAACTTCAAAAAATTTAAC
66 TAGAGGCTTGACAACTTAAAAAAATTTGAC
* *
24352620 TAAAAAGCTCCTCTTATTAGAGGCTTGATAACTTTAAAAAATTCTG-ACTAA--AAA-GCT-TCT
1 TGAAAAGCTCCTCTTATTAGAGGCTTGATAACTTT-AAAAA---TGAAATAATGAAAGGCTCT-T
* * *
24352680 CTCATTAAAGGCTTAACAACTTTAAAACAA-TTGAC
61 CTCATTAGAGGCTTGACAAC-TTAAAAAAATTTGAC
* * * * * *
24352715 TGAAAAGCTCTTATCATTAGAGGCTTGACAACTTTAAAAA--AATTTGAATG-AAGAGTTCCTT-
1 TGAAAAGCTCCTCTTATTAGAGGCTTGATAACTTTAAAAATGAA-AT-AATGAAAG-GCT-CTTC
24352776 TCATTAGAGGCTTGACAACTTAAAAAAATTTGAC
62 TCATTAGAGGCTTGACAACTTAAAAAAATTTGAC
*
24352810 TGAAAAGCTCCT-TTAATTAGTGGCTTGGA-AACTTTAAAAA
1 TGAAAAGCTCCTCTT-ATTAGAGGCTT-GATAACTTTAAAAA
24352850 AAATCTGATC
Statistics
Matches: 188, Mismatches: 24, Indels: 36
0.76 0.10 0.15
Matches are distributed among these distances:
90 1 0.01
91 1 0.01
92 2 0.01
93 2 0.01
94 15 0.08
95 142 0.76
96 18 0.10
97 1 0.01
98 4 0.02
99 2 0.01
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.31
Consensus pattern (95 bp):
TGAAAAGCTCCTCTTATTAGAGGCTTGATAACTTTAAAAATGAAATAATGAAAGGCTCTTCTCAT
TAGAGGCTTGACAACTTAAAAAAATTTGAC
Found at i:24352653 original size:47 final size:47
Alignment explanation
Indices: 24352531--24352850 Score: 258
Period size: 47 Copynumber: 6.7 Consensus size: 47
24352521 ATGATGAAAG
* * * * *
24352531 GCTCATCTTATTAGAGACTTGATAACTTT-AAAAA-TGAAATAATGAAA
1 GCTCCTCTTATTAGAGGCTTGACAACTTTAAAAAATTTAACTAA--AAA
* * * *
24352578 GGCTCTTCTCATCAGAGGCTTGACAACTTCAAAAAATTTAACTAAAAA
1 -GCTCCTCTTATTAGAGGCTTGACAACTTTAAAAAATTTAACTAAAAA
* *
24352626 GCTCCTCTTATTAGAGGCTTGATAACTTTAAAAAATTCTGACTAAAAA
1 GCTCCTCTTATTAGAGGCTTGACAACTTTAAAAAATT-TAACTAAAAA
* * * * * *
24352674 GCTTCTCTCATTAAAGGCTTAACAACTTTAAAACAA-TTGACTGAAAA
1 GCTCCTCTTATTAGAGGCTTGACAACTTTAAAA-AATTTAACTAAAAA
* * * * *
24352721 GCTCTTATCATTAGAGGCTTGACAACTTTAAAAAAATTTGAA-TGAAGA
1 GCTCCTCTTATTAGAGGCTTGACAACTTT-AAAAAATTT-AACTAAAAA
* * * *
24352769 GTTCCT-TTCATTAGAGGCTTGACAACTTAAAAAAATTTGACTGAAAA
1 GCTCCTCTT-ATTAGAGGCTTGACAACTTTAAAAAATTTAACTAAAAA
*
24352816 GCTCCT-TTAATTAGTGGCTTGGA-AACTTTAAAAAA
1 GCTCCTCTT-ATTAGAGGCTT-GACAACTTTAAAAAA
24352851 AATCTGATCG
Statistics
Matches: 225, Mismatches: 37, Indels: 21
0.80 0.13 0.07
Matches are distributed among these distances:
46 1 0.00
47 110 0.49
48 100 0.44
49 8 0.04
50 6 0.03
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (47 bp):
GCTCCTCTTATTAGAGGCTTGACAACTTTAAAAAATTTAACTAAAAA
Found at i:24352803 original size:48 final size:47
Alignment explanation
Indices: 24352573--24352851 Score: 289
Period size: 47 Copynumber: 5.9 Consensus size: 47
24352563 AATGAAATAA
* * * *
24352573 TGAAAGGCT-CTTCTCATCAGAGGCTTGACAACTTCAAAAAATTTAAC
1 TGAAAAGCTCCTT-TCATTAGAGGCTTGACAACTTAAAAAAATTTGAC
* * *
24352620 TAAAAAGCTCCTCTT-ATTAGAGGCTTGATAACTTTAAAAAATTCTGAC
1 TGAAAAGCTCCT-TTCATTAGAGGCTTGACAACTTAAAAAAATT-TGAC
* * * * * *
24352668 TAAAAAGCTTCTCTCATTAAAGGCTTAACAACTTTAAAACAA-TTGAC
1 TGAAAAGCTCCTTTCATTAGAGGCTTGACAAC-TTAAAAAAATTTGAC
*
24352715 TGAAAAGCT-CTTATCATTAGAGGCTTGACAACTTTAAAAAAATTTGAA
1 TGAAAAGCTCCTT-TCATTAGAGGCTTGACAAC-TTAAAAAAATTTGAC
* *
24352763 TGAAGAGTTCCTTTCATTAGAGGCTTGACAACTTAAAAAAATTTGAC
1 TGAAAAGCTCCTTTCATTAGAGGCTTGACAACTTAAAAAAATTTGAC
* *
24352810 TGAAAAGCTCCTTTAATTAGTGGCTTGGA-AACTTTAAAAAAA
1 TGAAAAGCTCCTTTCATTAGAGGCTT-GACAAC-TTAAAAAAA
24352852 ATCTGATCGA
Statistics
Matches: 196, Mismatches: 26, Indels: 19
0.81 0.11 0.08
Matches are distributed among these distances:
46 2 0.01
47 110 0.56
48 73 0.37
49 11 0.06
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (47 bp):
TGAAAAGCTCCTTTCATTAGAGGCTTGACAACTTAAAAAAATTTGAC
Found at i:24352850 original size:95 final size:95
Alignment explanation
Indices: 24352584--24352857 Score: 317
Period size: 95 Copynumber: 2.9 Consensus size: 95
24352574 GAAAGGCTCT
* * * * *
24352584 TCTCATCAGAGGCTTGACAACTTCAAAAAATTTAACTAAAAAGCTCCTCTTATTAGAGGCTTGAT
1 TCTCATTAGAGGCTTGACAACTTAAAAAAATTTGACTGAAAAGCTCCT-TTATTAGAGGCTTGAC
*
24352649 AACTTT-AAAAAATTCTGACTAAAAAGCTTC
65 AACTTTAAAAAAATTCTGAATAAAAAGCTTC
* * *
24352679 TCTCATTAAAGGCTTAACAACTTTAAAACAA-TTGACTGAAAAGCT-CTTATCATTAGAGGCTTG
1 TCTCATTAGAGGCTTGACAAC-TTAAAAAAATTTGACTGAAAAGCTCCTT-T-ATTAGAGGCTTG
* *
24352742 ACAACTTTAAAAAAATT-TGAATGAAGAG-TTCC
63 ACAACTTTAAAAAAATTCTGAATAAAAAGCTT-C
* *
24352774 TTTCATTAGAGGCTTGACAACTTAAAAAAATTTGACTGAAAAGCTCCTTTAATTAGTGGCTTGGA
1 TCTCATTAGAGGCTTGACAACTTAAAAAAATTTGACTGAAAAGCTCCTTT-ATTAGAGGCTT-GA
*
24352839 -AACTTTAAAAAAAATCTGA
64 CAACTTTAAAAAAATTCTGA
24352858 TCGAATGGAA
Statistics
Matches: 152, Mismatches: 18, Indels: 17
0.81 0.10 0.09
Matches are distributed among these distances:
93 1 0.01
94 13 0.09
95 115 0.76
96 23 0.15
ACGTcount: A:0.39, C:0.16, G:0.14, T:0.31
Consensus pattern (95 bp):
TCTCATTAGAGGCTTGACAACTTAAAAAAATTTGACTGAAAAGCTCCTTTATTAGAGGCTTGACA
ACTTTAAAAAAATTCTGAATAAAAAGCTTC
Found at i:24365073 original size:25 final size:26
Alignment explanation
Indices: 24365011--24365074 Score: 69
Period size: 28 Copynumber: 2.4 Consensus size: 26
24365001 CCATTTTTTT
*
24365011 GTTTATTATTAGTATTATTTTCTTTAG
1 GTTTATTATTAGTATTATTTTC-TAAG
24365038 GTGTTATTTATTA-TATTATTTTAC-AAG
1 GT-TTA-TTATTAGTATTATTTT-CTAAG
24365065 GTTTATTATT
1 GTTTATTATT
24365075 TTTTTTACCA
Statistics
Matches: 33, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
25 5 0.15
26 3 0.09
27 6 0.18
28 12 0.36
29 7 0.21
ACGTcount: A:0.25, C:0.03, G:0.11, T:0.61
Consensus pattern (26 bp):
GTTTATTATTAGTATTATTTTCTAAG
Found at i:24366266 original size:17 final size:18
Alignment explanation
Indices: 24366239--24366274 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
24366229 TCATAAGGTC
*
24366239 TTTTTTAATTAATTTTAA
1 TTTTTTAATTAACTTTAA
24366257 TTTTTT-ATTAACTTTAA
1 TTTTTTAATTAACTTTAA
24366274 T
1 T
24366275 AAATTAAACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 11 0.65
18 6 0.35
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (18 bp):
TTTTTTAATTAACTTTAA
Found at i:24374966 original size:131 final size:130
Alignment explanation
Indices: 24374762--24375129 Score: 323
Period size: 131 Copynumber: 2.8 Consensus size: 130
24374752 AAGGCTCCAT
* * ** * *
24374762 AACTTTTAAAAAGTAAATAAAGCTCCTCTAAACAGAGGCTCAATGACTTTAGAAAACAAATAAGG
1 AACTTTTAAAAAATAAATAAAGCTCATCTAAACAGAGGCTCAACAAATTTAGAAAACAAATAAAG
* ** ** *
24374827 CTCCTCT-AAGGGAAGGCTAAACAACTTTGGAAAATAAATAAAGGCT-CTTCTAAGCAGACGCTC
66 CACCTCTAAACAG-AGGCTAAACAACTTTAAAAAATAAATAAA-GCTCCTT-TAAACAGACGCTC
24374890 AAC
128 AAC
* * * * *
24374893 AACTTTTAAAAAATAAATAAAGCTCATTTAAGCAGAGGGTTAACAAATTT-GAAAAATAAATAAA
1 AACTTTTAAAAAATAAATAAAGCTCATCTAAACAGAGGCTCAACAAATTTAG-AAAACAAATAAA
* * *
24374957 GCACTTCTAAACAGAGGCTCAACAACTTTAAAAAATAAATAAAGCTCCTTTAAACAGAGGCTCAA
65 GCACCTCTAAACAGAGGCTAAACAACTTTAAAAAATAAATAAAGCTCCTTTAAACAGACGCTCAA
24375022 C
130 C
* * * ** * *** *
24375023 GACGTTTAAAAAATAAATAAGGCTTTTCTAAACAGAGGCTTAACGGCTTT-GAAAAAATAGATAA
1 AACTTTTAAAAAATAAATAAAGCTCATCTAAACAGAGGCTCAACAAATTTAGAAAACA-A-ATAA
* * * ** *
24375087 GGCTCCTCTAAACAAAGGCTCCATAAC-TTAAAAAATAAATAAA
64 AGCACCTCTAAACAGAGGCTAAACAACTTTAAAAAATAAATAAA
24375130 TAAAGCTTTT
Statistics
Matches: 194, Mismatches: 38, Indels: 11
0.80 0.16 0.05
Matches are distributed among these distances:
129 5 0.03
130 75 0.39
131 111 0.57
132 3 0.02
ACGTcount: A:0.46, C:0.17, G:0.14, T:0.23
Consensus pattern (130 bp):
AACTTTTAAAAAATAAATAAAGCTCATCTAAACAGAGGCTCAACAAATTTAGAAAACAAATAAAG
CACCTCTAAACAGAGGCTAAACAACTTTAAAAAATAAATAAAGCTCCTTTAAACAGACGCTCAAC
Found at i:24374972 original size:43 final size:43
Alignment explanation
Indices: 24374744--24375217 Score: 355
Period size: 44 Copynumber: 10.8 Consensus size: 43
24374734 TAAAAACTCC
* * * * *
24374744 TCTAAACAAAGGCTCCATAACTTTTAAAAAGTAAATAAAGCTCC
1 TCTAAACAGAGGCTCAACAAC-TTTAAAAAATAAATAAAGCTCT
** * * * *
24374788 TCTAAACAGAGGCTCAATGACTTTAGAAAACAAATAAGGCTCC
1 TCTAAACAGAGGCTCAACAACTTTAAAAAATAAATAAAGCTCT
** * **
24374831 TCT-AAGGGAAGGCTAAACAACTTTGGAAAATAAATAAAGGCTCT
1 TCTAAACAG-AGGCTCAACAACTTTAAAAAATAAATAAA-GCTCT
* *
24374875 TCTAAGCAGACGCTCAACAACTTTTAAAAAATAAATAAAGCTCAT
1 TCTAAACAGAGGCTCAACAAC-TTTAAAAAATAAATAAAGCTC-T
* * * * * *
24374920 T-TAAGCAGAGGGTTAACAAATTTGAAAAATAAATAAAGCACT
1 TCTAAACAGAGGCTCAACAACTTTAAAAAATAAATAAAGCTCT
24374962 TCTAAACAGAGGCTCAACAACTTTAAAAAATAAATAAAGCTCCT
1 TCTAAACAGAGGCTCAACAACTTTAAAAAATAAATAAAGCT-CT
* * *
24375006 T-TAAACAGAGGCTCAACGACGTTTAAAAAATAAATAAGGCTTT
1 TCTAAACAGAGGCTCAACAAC-TTTAAAAAATAAATAAAGCTCT
* ** * * *
24375049 TCTAAACAGAGGCTTAACGGCTTTGAAAAAATAGATAAGGCTCC
1 TCTAAACAGAGGCTCAACAACTTT-AAAAAATAAATAAAGCTCT
* * * * *
24375093 TCTAAACAAAGGCTCCATAACTTAAAAAATAAATAAATAAAGCTTT
1 TCTAAACAGAGGCTCAACAACTT--TAAA-AAATAAATAAAGCTCT
* * ** * *
24375139 TTTAATA-AGAGGCTCAATGATTTTTAAAAAGTAAAT-AAGACTTT
1 TCTAA-ACAGAGGCTCAA-CAACTTTAAAAAATAAATAAAG-CTCT
* * *
24375183 TCTAAACAAAGGTTCAACGACTTTAAAAAAATAAA
1 TCTAAACAGAGGCTCAACAACTTT-AAAAAATAAA
24375218 GCTCCTTGAC
Statistics
Matches: 342, Mismatches: 70, Indels: 36
0.76 0.16 0.08
Matches are distributed among these distances:
42 5 0.01
43 126 0.37
44 158 0.46
45 25 0.07
46 24 0.07
47 4 0.01
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.25
Consensus pattern (43 bp):
TCTAAACAGAGGCTCAACAACTTTAAAAAATAAATAAAGCTCT
Found at i:24375211 original size:90 final size:89
Alignment explanation
Indices: 24374739--24375217 Score: 327
Period size: 87 Copynumber: 5.5 Consensus size: 89
24374729 TAATATAAAA
* ** * * **
24374739 ACTCCTCTAAACAAAGGCTCCATAACTTT-TAAAAAGTAAATAAAGCTCCTCTAAACAGAGGCTC
1 ACTCCTCTAAACAAAGGCTCAACGACTTTAAAAAAAATAAATAAAGCTTTTCTAAACAGAGGCTC
* * *
24374803 AATGACTTT-AGAAAACAAATAAG
66 AACGACTTTGAAAAAATAAATAAG
* *** * * ** * * *
24374826 GCTCCTCTAAGGGAAGGCTAAACAACTTT--GGAAAATAAATAAAGGCTCTTCTAAGCAGACGCT
1 ACTCCTCTAAACAAAGGCTCAACGACTTTAAAAAAAATAAATAAA-GCTTTTCTAAACAGAGGCT
* *
24374889 CAACAACTTTTAAAAAATAAATAA-
65 CAACGACTTTGAAAAAATAAATAAG
* * * * * * * * * **
24374913 AGCTCATTTAAGCAGAGGGTTAACAAATTT--GAAAAATAAATAAAGCACTTCTAAACAGAGGCT
1 A-CTCCTCTAAACAAAGGCTCAACGACTTTAAAAAAAATAAATAAAGCTTTTCTAAACAGAGGCT
*
24374976 CAACAACTTT-AAAAAATAAATAA-
65 CAACGACTTTGAAAAAATAAATAAG
* * *
24374999 AGCTCCTTTAAACAGAGGCTCAACGACGTTT--AAAAAATAAATAAGGCTTTTCTAAACAGAGGC
1 A-CTCCTCTAAACAAAGGCTCAACGAC-TTTAAAAAAAATAAATAAAGCTTTTCTAAACAGAGGC
* * *
24375062 TTAACGGCTTTGAAAAAATAGATAAG
64 TCAACGACTTTGAAAAAATAAATAAG
* * ** * *
24375088 GCTCCTCTAAACAAAGGCTCCATAACTTAAAAAATAAATAAATAAAGCTTTTTTAATA-AGAGGC
1 ACTCCTCTAAACAAAGGCTCAACGACTTTAAAAA-AAATAAATAAAGCTTTTCTAA-ACAGAGGC
* * * *
24375152 TCAATGATTTTTAAAAAGTAAATAAG
64 TCAACGACTTTGAAAAAATAAATAAG
** *
24375178 ACTTTTCTAAACAAAGGTTCAACGACTTT-AAAAAAATAAA
1 ACTCCTCTAAACAAAGGCTCAACGACTTTAAAAAAAATAAA
24375218 GCTCCTTGAC
Statistics
Matches: 314, Mismatches: 68, Indels: 19
0.78 0.17 0.05
Matches are distributed among these distances:
86 45 0.14
87 113 0.36
88 83 0.26
89 7 0.02
90 65 0.21
91 1 0.00
ACGTcount: A:0.46, C:0.16, G:0.13, T:0.25
Consensus pattern (89 bp):
ACTCCTCTAAACAAAGGCTCAACGACTTTAAAAAAAATAAATAAAGCTTTTCTAAACAGAGGCTC
AACGACTTTGAAAAAATAAATAAG
Found at i:24376311 original size:15 final size:14
Alignment explanation
Indices: 24376276--24376335 Score: 68
Period size: 15 Copynumber: 4.1 Consensus size: 14
24376266 TGAGTCTTTC
*
24376276 TTTTTTCATTTTCCTT
1 TTTTTTCA-TTT-ATT
24376292 TTTTTTCATTTATT
1 TTTTTTCATTTATT
24376306 TATTTTTCATTTATT
1 T-TTTTTCATTTATT
*
24376321 TTTCTTCATTT-TT
1 TTTTTTCATTTATT
24376334 TT
1 TT
24376336 CTTGTTTTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
13 4 0.10
14 12 0.29
15 17 0.41
16 8 0.20
ACGTcount: A:0.12, C:0.12, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTTTCATTTATT
Found at i:24382188 original size:37 final size:37
Alignment explanation
Indices: 24382147--24382224 Score: 138
Period size: 37 Copynumber: 2.1 Consensus size: 37
24382137 AATCTAAGGT
*
24382147 CTTGTAGGAGGTTAAGTGTTAGGACTATATATGGCAG
1 CTTGTAGGAGGTTAAGTGTTAGGACTATATATGGCAC
*
24382184 CTTGTAGGAGGTTAAGTGTTAGGATTATATATGGCAC
1 CTTGTAGGAGGTTAAGTGTTAGGACTATATATGGCAC
24382221 CTTG
1 CTTG
24382225 GGGTTTGAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.26, C:0.09, G:0.31, T:0.35
Consensus pattern (37 bp):
CTTGTAGGAGGTTAAGTGTTAGGACTATATATGGCAC
Found at i:24384763 original size:52 final size:45
Alignment explanation
Indices: 24384698--24384813 Score: 115
Period size: 45 Copynumber: 2.4 Consensus size: 45
24384688 AAATATATCT
*
24384698 AATTATTCTACCATTTGGGCCAAATTAAAAATATCTTCTTTTTTTAATTTCTA
1 AATTTTTC-ACCATTTGGG-CAAATTAAAAA-A---T-TTTTTTT-ATTTCTA
** * *
24384751 AATTTTTCACCATTTGGGCTTATTTAGAAATTTTTTTTATTTCTA
1 AATTTTTCACCATTTGGGCAAATTAAAAAATTTTTTTTATTTCTA
24384796 AATTTTTCACCATTTGGG
1 AATTTTTCACCATTTGGG
24384814 TCTATTTAGA
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
45 25 0.43
46 7 0.12
47 1 0.02
50 1 0.02
51 7 0.12
52 10 0.17
53 7 0.12
ACGTcount: A:0.28, C:0.14, G:0.09, T:0.50
Consensus pattern (45 bp):
AATTTTTCACCATTTGGGCAAATTAAAAAATTTTTTTTATTTCTA
Found at i:24384785 original size:45 final size:45
Alignment explanation
Indices: 24384736--24384826 Score: 157
Period size: 45 Copynumber: 2.0 Consensus size: 45
24384726 AAATATCTTC
24384736 TTTTTTTAATTTCTAAATTTTTCACCATTTGGG-CTTATTTAGAAA
1 TTTTTTTAATTTCTAAATTTTTCACCATTTGGGTC-TATTTAGAAA
*
24384781 TTTTTTTTATTTCTAAATTTTTCACCATTTGGGTCTATTTAGAAA
1 TTTTTTTAATTTCTAAATTTTTCACCATTTGGGTCTATTTAGAAA
24384826 T
1 T
24384827 CTTTCCCTTT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
45 43 0.98
46 1 0.02
ACGTcount: A:0.25, C:0.11, G:0.09, T:0.55
Consensus pattern (45 bp):
TTTTTTTAATTTCTAAATTTTTCACCATTTGGGTCTATTTAGAAA
Found at i:24385103 original size:11 final size:13
Alignment explanation
Indices: 24385070--24385104 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
24385060 CTAAATTATT
24385070 CCATAATTTAGGA
1 CCATAATTTAGGA
24385083 CCATAATTTAGGA
1 CCATAATTTAGGA
24385096 -CA-AATTTAG
1 CCATAATTTAG
24385105 AGAAACTTCT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 7 0.32
12 2 0.09
13 13 0.59
ACGTcount: A:0.40, C:0.14, G:0.14, T:0.31
Consensus pattern (13 bp):
CCATAATTTAGGA
Found at i:24385962 original size:18 final size:19
Alignment explanation
Indices: 24385939--24385977 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
24385929 AATCCCGTCG
*
24385939 AAAAGTCACTG-AAAATTC
1 AAAAGTCACCGAAAAATTC
24385957 AAAAGTCACCGAAAAATTC
1 AAAAGTCACCGAAAAATTC
24385976 AA
1 AA
24385978 CTGAAATTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 10 0.53
19 9 0.47
ACGTcount: A:0.54, C:0.18, G:0.10, T:0.18
Consensus pattern (19 bp):
AAAAGTCACCGAAAAATTC
Found at i:24386931 original size:22 final size:24
Alignment explanation
Indices: 24386882--24386931 Score: 68
Period size: 22 Copynumber: 2.2 Consensus size: 24
24386872 CAAGGTGGGT
* *
24386882 TTATAATAATTTAATCATCATCAT
1 TTATAATAATTTAATCATAATCAA
24386906 TTATAA-AATTTAAT-ATAATCAA
1 TTATAATAATTTAATCATAATCAA
24386928 TTAT
1 TTAT
24386932 TTTATTATTT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 10 0.42
23 8 0.33
24 6 0.25
ACGTcount: A:0.46, C:0.08, G:0.00, T:0.46
Consensus pattern (24 bp):
TTATAATAATTTAATCATAATCAA
Found at i:24388524 original size:5 final size:5
Alignment explanation
Indices: 24388514--24388540 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
24388504 TGGACCACAT
24388514 ATTAA ATTAA ATTAA ATTAA ATTAA AT
1 ATTAA ATTAA ATTAA ATTAA ATTAA AT
24388541 AATTAATGAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATTAA
Found at i:24390375 original size:2 final size:2
Alignment explanation
Indices: 24390368--24390398 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
24390358 GTTATAATTA
24390368 AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
24390399 TGGTGCTGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:24393977 original size:29 final size:30
Alignment explanation
Indices: 24393945--24394001 Score: 98
Period size: 30 Copynumber: 1.9 Consensus size: 30
24393935 TCAATAGATG
*
24393945 TAGATTAATAGCT-AAAAAAATTCAATCCC
1 TAGATTAATAACTAAAAAAAATTCAATCCC
24393974 TAGATTAATAACTAAAAAAAATTCAATC
1 TAGATTAATAACTAAAAAAAATTCAATC
24394002 TCATTTTGCT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 12 0.46
30 14 0.54
ACGTcount: A:0.53, C:0.14, G:0.05, T:0.28
Consensus pattern (30 bp):
TAGATTAATAACTAAAAAAAATTCAATCCC
Found at i:24395565 original size:2 final size:2
Alignment explanation
Indices: 24395560--24395592 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
24395550 GCCCAACATC
24395560 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24395593 CTTTTAAAAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24395722 original size:2 final size:2
Alignment explanation
Indices: 24395715--24395756 Score: 70
Period size: 2 Copynumber: 22.0 Consensus size: 2
24395705 CATAATCAGT
24395715 TA TA TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24395755 TA
1 TA
24395757 AGTGGACACT
Statistics
Matches: 38, Mismatches: 0, Indels: 4
0.90 0.00 0.10
Matches are distributed among these distances:
1 2 0.05
2 36 0.95
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:24405033 original size:28 final size:28
Alignment explanation
Indices: 24404996--24405050 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
24404986 TCAATAGATG
*
24404996 TAGATTAATAGCCT-AAAAATTCAATCCC
1 TAGATTAATA-ACTAAAAAATTCAATCCC
24405024 TAGATTAATAACTAAAAAAATTCAATC
1 TAGATTAATAACT-AAAAAATTCAATC
24405051 TCATTTTGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
27 2 0.08
28 10 0.42
29 12 0.50
ACGTcount: A:0.49, C:0.16, G:0.05, T:0.29
Consensus pattern (28 bp):
TAGATTAATAACTAAAAAATTCAATCCC
Found at i:24406622 original size:2 final size:2
Alignment explanation
Indices: 24406617--24406641 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
24406607 CCCCAACATC
24406617 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
24406642 CTTTTAAAAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:24406771 original size:2 final size:2
Alignment explanation
Indices: 24406764--24406802 Score: 62
Period size: 2 Copynumber: 20.0 Consensus size: 2
24406754 CATAATCAGT
*
24406764 TA TA TA TA TA TA TA GA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
24406803 AGTGGACACT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.49
Consensus pattern (2 bp):
TA
Found at i:24414725 original size:2 final size:2
Alignment explanation
Indices: 24414718--24414752 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
24414708 ATATCCATCA
24414718 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
24414753 CACTAAAACT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:24418102 original size:42 final size:36
Alignment explanation
Indices: 24417965--24418101 Score: 211
Period size: 36 Copynumber: 3.8 Consensus size: 36
24417955 ATAATGGGGT
* * * *
24417965 GGAGGTGGTGGAGGAGACTTGTATTTGTATACCGGA
1 GGAGGTGGTGGGGGAGACTTGTACTTGTAAACTGGA
*
24418001 GGGGGTGGTGGGGGAGACTTGTACTTGTAAACTGGA
1 GGAGGTGGTGGGGGAGACTTGTACTTGTAAACTGGA
24418037 GGAGGTGGTGGGGGAGACTTGTACTTGTAAACTGGA
1 GGAGGTGGTGGGGGAGACTTGTACTTGTAAACTGGA
* *
24418073 GGAGGTGGTGGCGGAGATTTGTACTTGTA
1 GGAGGTGGTGGGGGAGACTTGTACTTGTA
24418102 CGGGTGCTTG
Statistics
Matches: 93, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 93 1.00
ACGTcount: A:0.20, C:0.08, G:0.45, T:0.27
Consensus pattern (36 bp):
GGAGGTGGTGGGGGAGACTTGTACTTGTAAACTGGA
Found at i:24418132 original size:87 final size:87
Alignment explanation
Indices: 24418037--24418536 Score: 775
Period size: 87 Copynumber: 5.7 Consensus size: 87
24418027 GTAAACTGGA
* * * * * * * *
24418037 GGAGGTGGTGGGGGAGACTTGTACTTGTAAACTGGAGGAGGTGGTGGCGGAGATTTGTACTTGTA
1 GGAGGTGGAGGTGGAGACTTATACTTGTAAACTGGTGGTGGTGGGGGTGGAGATTTGTACTTATA
*
24418102 CGGGTGCTTGGGAGGTGATGGT
66 CGGGTGCTTGGGTGGTGATGGT
* * * *
24418124 GGTGGTGGTGGTGGAGACTTATATTTGTAAACTGGGGGTGGTGGGGGTGGAGATTTGTACTTATA
1 GGAGGTGGAGGTGGAGACTTATACTTGTAAACTGGTGGTGGTGGGGGTGGAGATTTGTACTTATA
*
24418189 CGGGTGCTTGGGTGGTAATGGT
66 CGGGTGCTTGGGTGGTGATGGT
* *
24418211 GGAGGTGGAGGTGGAGACTTATATTTGTAAACTGGGGGTGGTGGGGGTGGAGATTTGTACTTATA
1 GGAGGTGGAGGTGGAGACTTATACTTGTAAACTGGTGGTGGTGGGGGTGGAGATTTGTACTTATA
*
24418276 CGGGTGCTTGGGTGGTAATGGT
66 CGGGTGCTTGGGTGGTGATGGT
* *
24418298 GGGGGTGGAGGTGGAGACTTGTACTTGTAAACTGGTGGTGGTGGGGGTGGAGATTTGTACTTATA
1 GGAGGTGGAGGTGGAGACTTATACTTGTAAACTGGTGGTGGTGGGGGTGGAGATTTGTACTTATA
*
24418363 CGGGTGCGTGGGTGGTGATGGT
66 CGGGTGCTTGGGTGGTGATGGT
24418385 GGAGGTGGAGGTGGAGACTTATACTTGTAAACTGGTGGTGGTGGGGGTGGAGATTTGTACTTATA
1 GGAGGTGGAGGTGGAGACTTATACTTGTAAACTGGTGGTGGTGGGGGTGGAGATTTGTACTTATA
24418450 CGGGTGCTTGGGTGGTGATGGT
66 CGGGTGCTTGGGTGGTGATGGT
* *
24418472 GGAGGTGGAGGTGGAGACTTATACTTGTAAACCGGTGGTGGTGGTGGGGGTGGAGACTTATACTT
1 GGAGGTGGAGGTGGAGACTTATACTTGTAAA-C--TGGTGGTGGTGGGGGTGGAGATTTGTACTT
24418537 GTAAACCGGT
Statistics
Matches: 386, Mismatches: 24, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
87 357 0.92
88 1 0.00
90 28 0.07
ACGTcount: A:0.17, C:0.07, G:0.46, T:0.30
Consensus pattern (87 bp):
GGAGGTGGAGGTGGAGACTTATACTTGTAAACTGGTGGTGGTGGGGGTGGAGATTTGTACTTATA
CGGGTGCTTGGGTGGTGATGGT
Found at i:24418377 original size:36 final size:37
Alignment explanation
Indices: 24418295--24418377 Score: 93
Period size: 36 Copynumber: 2.3 Consensus size: 37
24418285 GGGTGGTAAT
*
24418295 GGTGG-GGGTGGAGGTGGAGACTTGTACTTGTAAACT
1 GGTGGTGGGTGGAGGTGGAGACTTGTACTTGTAAACG
* * *
24418331 GGTGGT-GGTGGGGGTGGAGATTTGTAC-T-TATACG
1 GGTGGTGGGTGGAGGTGGAGACTTGTACTTGTAAACG
24418365 GGTGCGTGGGTGG
1 GGTG-GTGGGTGG
24418378 TGATGGTGGA
Statistics
Matches: 40, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
34 8 0.20
35 3 0.08
36 29 0.73
ACGTcount: A:0.14, C:0.07, G:0.49, T:0.29
Consensus pattern (37 bp):
GGTGGTGGGTGGAGGTGGAGACTTGTACTTGTAAACG
Found at i:24418428 original size:36 final size:36
Alignment explanation
Indices: 24418381--24418613 Score: 124
Period size: 36 Copynumber: 6.0 Consensus size: 36
24418371 TGGGTGGTGA
*
24418381 TGGTGGAGGTGGAGGTGGAGACTTATACTTGTAAAC
1 TGGTGGTGGTGGAGGTGGAGACTTATACTTGTAAAC
* * * * **
24418417 TGGTGGTGGTGGGGGTGGAGATTTGTACTTATACGGGTGC
1 TGGTGGTGGTGGAGGTGGAGACTTATACTTGTA----AAC
24418457 TTGGGTGGTGATGGTGGAGGTGGAGGTGGAGACTTATACTTGTAAACC
1 -T-GGT-G-G-TGGTGGA------GGTGGAGACTTATACTTGTAAA-C
*
24418505 GGTGGTGGTGGTGGGGGTGGAGACTTATACTTGTAAAC
1 --TGGTGGTGGTGGAGGTGGAGACTTATACTTGTAAAC
* * * * *
24418543 CGGTGGTGGTGGTGGGGGAGACTTGTATTTGTAAAC
1 TGGTGGTGGTGGAGGTGGAGACTTATACTTGTAAAC
* * * * * * *
24418579 AGGGGGAGGAGGAGGAGGAGATTTGTACTTGTAAA
1 TGGTGGTGGTGGAGGTGGAGACTTATACTTGTAAA
24418614 GGGGCGGAGG
Statistics
Matches: 152, Mismatches: 28, Indels: 34
0.71 0.13 0.16
Matches are distributed among these distances:
36 86 0.57
38 1 0.01
39 22 0.14
40 1 0.01
41 1 0.01
42 3 0.02
43 1 0.01
44 1 0.01
45 12 0.08
46 1 0.01
47 1 0.01
48 4 0.03
49 1 0.01
51 17 0.11
ACGTcount: A:0.21, C:0.07, G:0.44, T:0.28
Consensus pattern (36 bp):
TGGTGGTGGTGGAGGTGGAGACTTATACTTGTAAAC
Found at i:24418511 original size:39 final size:39
Alignment explanation
Indices: 24418468--24418613 Score: 160
Period size: 39 Copynumber: 3.9 Consensus size: 39
24418458 TGGGTGGTGA
24418468 TGGTGGAGGTGGAGGTGGAGACTTATACTTGTAAACCGG
1 TGGTGGAGGTGGAGGTGGAGACTTATACTTGTAAACCGG
* *
24418507 TGGTGGTGGTGGGGGTGGAGACTTATACTTGTAAACCGG
1 TGGTGGAGGTGGAGGTGGAGACTTATACTTGTAAACCGG
* * * *
24418546 TGGTGGTGGT-G-GG-GGAGACTTGTATTTGTAAA-CAG
1 TGGTGGAGGTGGAGGTGGAGACTTATACTTGTAAACCGG
* * * *
24418581 -GG-GGAGGAGGAGGAGGAGATTTGTACTTGTAAA
1 TGGTGGAGGTGGAGGTGGAGACTTATACTTGTAAA
24418614 GGGGCGGAGG
Statistics
Matches: 95, Mismatches: 9, Indels: 9
0.84 0.08 0.08
Matches are distributed among these distances:
33 4 0.04
34 3 0.03
35 4 0.04
36 34 0.36
37 2 0.02
38 1 0.01
39 47 0.49
ACGTcount: A:0.23, C:0.08, G:0.43, T:0.27
Consensus pattern (39 bp):
TGGTGGAGGTGGAGGTGGAGACTTATACTTGTAAACCGG
Found at i:24419852 original size:19 final size:19
Alignment explanation
Indices: 24419828--24419868 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
24419818 AAACACTAAT
24419828 CACAAAGATCA-AAAAATTA
1 CACAAAGATCAGAAAAA-TA
*
24419847 CACAAAGGTCAGAAAAATA
1 CACAAAGATCAGAAAAATA
24419866 CAC
1 CAC
24419869 GAAAAGTAGT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.59, C:0.20, G:0.10, T:0.12
Consensus pattern (19 bp):
CACAAAGATCAGAAAAATA
Found at i:24424777 original size:9 final size:9
Alignment explanation
Indices: 24424763--24424829 Score: 75
Period size: 9 Copynumber: 7.3 Consensus size: 9
24424753 CTAATGGATG
24424763 AAAAAAAT-
1 AAAAAAATA
24424771 AAAAAAAT-
1 AAAAAAATA
**
24424779 GGAAAAATA
1 AAAAAAATA
24424788 AAAAAAATGA
1 AAAAAAAT-A
24424798 AGAAAAAATA
1 A-AAAAAATA
24424808 AAAGAAAATA
1 AAA-AAAATA
24424818 AAAAAAATA
1 AAAAAAATA
24424827 AAA
1 AAA
24424830 GAATGGAAAA
Statistics
Matches: 51, Mismatches: 4, Indels: 7
0.82 0.06 0.11
Matches are distributed among these distances:
8 14 0.27
9 17 0.33
10 13 0.25
11 7 0.14
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.10
Consensus pattern (9 bp):
AAAAAAATA
Found at i:24424793 original size:19 final size:18
Alignment explanation
Indices: 24424762--24424843 Score: 71
Period size: 17 Copynumber: 4.5 Consensus size: 18
24424752 ACTAATGGAT
*
24424762 GAAAAAAATAAAAAAATG
1 GAAAAAAAAAAAAAAATG
*
24424780 G-AAAAATAAAAAAAATG
1 GAAAAAAAAAAAAAAATG
*
24424797 AAGAAAAAATAAAAGAAAAT-
1 --GAAAAAA-AAAAAAAAATG
*
24424817 -AAAAAAAATAAAAGAATG
1 GAAAAAAAA-AAAAAAATG
24424835 GAAAAAAAA
1 GAAAAAAAA
24424844 TGAAAATGAG
Statistics
Matches: 51, Mismatches: 6, Indels: 13
0.73 0.09 0.19
Matches are distributed among these distances:
16 2 0.04
17 26 0.51
18 1 0.02
19 9 0.18
20 5 0.10
21 8 0.16
ACGTcount: A:0.79, C:0.00, G:0.11, T:0.10
Consensus pattern (18 bp):
GAAAAAAAAAAAAAAATG
Found at i:24424840 original size:11 final size:10
Alignment explanation
Indices: 24424781--24424849 Score: 67
Period size: 10 Copynumber: 7.1 Consensus size: 10
24424771 AAAAAAATGG
24424781 AAAAAT-AAA
1 AAAAATGAAA
24424790 AAAAATGAAGA
1 AAAAATGAA-A
24424801 AAAAAT-AAA
1 AAAAATGAAA
24424810 AGAAAAT-AAA
1 A-AAAATGAAA
24424820 AAAAAT--AA
1 AAAAATGAAA
*
24424828 AAGAATGGAAA
1 AAAAAT-GAAA
24424839 AAAAATGAAA
1 AAAAATGAAA
24424849 A
1 A
24424850 TGAGAGAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 11
0.80 0.03 0.17
Matches are distributed among these distances:
8 7 0.13
9 13 0.25
10 18 0.35
11 14 0.27
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (10 bp):
AAAAATGAAA
Found at i:24424844 original size:19 final size:19
Alignment explanation
Indices: 24424763--24424849 Score: 90
Period size: 19 Copynumber: 4.6 Consensus size: 19
24424753 CTAATGGATG
*
24424763 AAAAAAATAAAAAAATGGA
1 AAAAAAATAAAAGAATGGA
*
24424782 AAAATAA-AAAA-AAT-GA
1 AAAAAAATAAAAGAATGGA
***
24424798 AGAAAAAATAAAAGAAAATA
1 A-AAAAAATAAAAGAATGGA
24424818 AAAAAAATAAAAGAATGGA
1 AAAAAAATAAAAGAATGGA
24424837 AAAAAAATGAAAA
1 AAAAAAAT-AAAA
24424850 TGAGAGAAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 9
0.78 0.10 0.12
Matches are distributed among these distances:
16 3 0.05
17 8 0.14
18 8 0.14
19 31 0.55
20 6 0.11
ACGTcount: A:0.79, C:0.00, G:0.10, T:0.10
Consensus pattern (19 bp):
AAAAAAATAAAAGAATGGA
Found at i:24425357 original size:19 final size:19
Alignment explanation
Indices: 24425333--24425371 Score: 60
Period size: 19 Copynumber: 2.1 Consensus size: 19
24425323 GATGATAGGG
*
24425333 GGTAAAAAAATGAAGAGAT
1 GGTAAAAAAATGAAAAGAT
*
24425352 GGTAAAAAACTGAAAAGAT
1 GGTAAAAAAATGAAAAGAT
24425371 G
1 G
24425372 ATTTGGAAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.56, C:0.03, G:0.26, T:0.15
Consensus pattern (19 bp):
GGTAAAAAAATGAAAAGAT
Found at i:24426470 original size:40 final size:40
Alignment explanation
Indices: 24426355--24426771 Score: 362
Period size: 40 Copynumber: 10.3 Consensus size: 40
24426345 AGGAACCTTA
* * * *
24426355 TTTATTTTTGCAAAGTTATTGAGCCTCTGTTTA-AAGGAGCA
1 TTTATTTTT-CAAAGTTGTTGAGACTCTGATTAGAA-GAGCC
* * * * *
24426396 TTTATTTTTTAAAAGTTATTGAGCCT-TTATTTAGATGAGCC
1 TTTA-TTTTTCAAAGTTGTTGAGACTCTGA-TTAGAAGAGCC
* * *
24426437 TTTATTTTTCAAAGTTGTTGGGACTCTAATTAGAAGAGCTTTA
1 TTTATTTTTCAAAGTTGTTGAGACTCTGATTAGAAGAGC---C
* * * *
24426480 TTTATTTTTCAAAGTTGTTGAG-CTTTTAATTAAAAGAGCA
1 TTTATTTTTCAAAGTTGTTGAGAC-TCTGATTAGAAGAGCC
* * * *
24426520 TTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGATGAGGC
1 TTTATTTTTCAAAGTTGTTGAGACTCTGATTAGAAGAGCC
* * *
24426560 TTTATTTTTCAAAGTTGTTGA-ACCTCTGTTTAGATGAGCT
1 TTTATTTTTCAAAGTTGTTGAGA-CTCTGATTAGAAGAGCC
* * * *
24426600 TTTATTTTTCAAAGATGTTGAGCCTTTGATTAGAGGAGCC
1 TTTATTTTTCAAAGTTGTTGAGACTCTGATTAGAAGAGCC
* *
24426640 TTTATTTTTCAAAGTTGTTGAGACTTTGATTAGAGGAGCC
1 TTTATTTTTCAAAGTTGTTGAGACTCTGATTAGAAGAGCC
* *
24426680 TTTA-TTTTCAAAGTTGTTGA-ACCTCTGTTTAGAAGAGCT
1 TTTATTTTTCAAAGTTGTTGAGA-CTCTGATTAGAAGAGCC
* * * * *
24426719 TTTA-TTTTCAAAGTTATTGAGCCTTTGATAAGAGGAGCC
1 TTTATTTTTCAAAGTTGTTGAGACTCTGATTAGAAGAGCC
24426758 TTTTATTTTTCAAA
1 -TTTATTTTTCAAA
24426772 AGTCATTAAG
Statistics
Matches: 317, Mismatches: 44, Indels: 30
0.81 0.11 0.08
Matches are distributed among these distances:
38 1 0.00
39 60 0.19
40 174 0.55
41 41 0.13
42 7 0.02
43 34 0.11
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.44
Consensus pattern (40 bp):
TTTATTTTTCAAAGTTGTTGAGACTCTGATTAGAAGAGCC
Found at i:24426604 original size:80 final size:79
Alignment explanation
Indices: 24426322--24426771 Score: 458
Period size: 80 Copynumber: 5.5 Consensus size: 79
24426312 TACTTTTCCA
* * * *
24426322 AAAGTTATTGAGCTTTTGATTAGAGGAACCTTATTTATTTTTGCAAAGTTATTGAGCCTCTGTTT
1 AAAGTTGTTGAGCCTTTGATTAGAGGAGCC---TTTATTTTT-CAAAGTTGTTGAGCCTCTGTTT
*
24426387 A-AAGGAGCATTTATTTTTTA
62 AGAA-GAGC-TTTA-TTTTTC
* * * * **
24426407 AAAGTTATTGAGCCTTT-ATTTAGATGAGCCTTTATTTTTCAAAGTTGTTGGGACTCTAATTAGA
1 AAAGTTGTTGAGCCTTTGA-TTAGAGGAGCCTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGA
24426471 AGAGCTTTATTTATTTTTC
65 AGAGC----TTTATTTTTC
* * * * * *
24426490 AAAGTTGTTGAGCTTTTAATTAAAAGAGCATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAT
1 AAAGTTGTTGAGCCTTTGATTAGAGGAGCCTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA
24426555 GAGGCTTTATTTTTC
66 GA-GCTTTATTTTTC
* * * * * * * * *
24426570 AAAGTTGTTGAACCTCTGTTTAGATGAGCTTTTATTTTTCAAAGATGTTGAGCCTTTGATTAGAG
1 AAAGTTGTTGAGCCTTTGATTAGAGGAGCCTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA
24426635 GAGCCTTTATTTTTC
66 GAG-CTTTATTTTTC
* *
24426650 AAAGTTGTTGAGACTTTGATTAGAGGAGCCTTTA-TTTTCAAAGTTGTTGAACCTCTGTTTAGAA
1 AAAGTTGTTGAGCCTTTGATTAGAGGAGCCTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA
24426714 GAGCTTT-TATTTTC
66 GAGCTTTAT-TTTTC
* *
24426728 AAAGTTATTGAGCCTTTGATAAGAGGAGCCTTTTATTTTTCAAA
1 AAAGTTGTTGAGCCTTTGATTAGAGGAGCC-TTTATTTTTCAAA
24426772 AGTCATTAAG
Statistics
Matches: 309, Mismatches: 45, Indels: 27
0.81 0.12 0.07
Matches are distributed among these distances:
77 1 0.00
78 36 0.12
79 33 0.11
80 112 0.36
81 22 0.07
82 11 0.04
83 60 0.19
84 9 0.03
85 25 0.08
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.44
Consensus pattern (79 bp):
AAAGTTGTTGAGCCTTTGATTAGAGGAGCCTTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAA
GAGCTTTATTTTTC
Found at i:24426673 original size:120 final size:120
Alignment explanation
Indices: 24426355--24426771 Score: 520
Period size: 120 Copynumber: 3.4 Consensus size: 120
24426345 AGGAACCTTA
* * * *
24426355 TTTATTTTTGCAAAGTTATTGAGCCTCTGTTTAAAGGAGCATTTATTTTTTAAAAGTTATTGAGC
1 TTTATTTTT-CAAAGTTATTGAGCCTTTGATTAAAGGAGCATTTA-TTTTTCAAAGTTGTTGAGC
* **
24426420 CTTT-ATTTAGATGAGCCTTTATTTTTCAAAGTTGTTGGGA-CTCTAATTAGAAGAGCTTT
64 CTTTGA-TTAGATGAGCCTTTATTTTTCAAAGTTGTT-GAACCTCTGTTTAGAAGAGC--T
* * * *
24426479 ATTTATTTTTCAAAGTTGTTGAGCTTTTAATTAAAAGAGCATTTATTTTTCAAAGTTGTTGAGCC
1 -TTTATTTTTCAAAGTTATTGAGCCTTTGATTAAAGGAGCATTTATTTTTCAAAGTTGTTGAGCC
* * * *
24426544 TCTGTTTAGATGAGGCTTTATTTTTCAAAGTTGTTGAACCTCTGTTTAGATGAGCT
65 TTTGATTAGATGAGCCTTTATTTTTCAAAGTTGTTGAACCTCTGTTTAGAAGAGCT
* * * * *
24426600 TTTATTTTTCAAAGATGTTGAGCCTTTGATTAGAGGAGCCTTTATTTTTCAAAGTTGTTGAGACT
1 TTTATTTTTCAAAGTTATTGAGCCTTTGATTAAAGGAGCATTTATTTTTCAAAGTTGTTGAGCCT
*
24426665 TTGATTAGAGGAGCCTTTA-TTTTCAAAGTTGTTGAACCTCTGTTTAGAAGAGCT
66 TTGATTAGATGAGCCTTTATTTTTCAAAGTTGTTGAACCTCTGTTTAGAAGAGCT
*
24426719 TTTA-TTTTCAAAGTTATTGAGCCTTTGA-TAAGAGGAGCCTTTTATTTTTCAAA
1 TTTATTTTTCAAAGTTATTGAGCCTTTGATTAA-AGGAG-CATTTATTTTTCAAA
24426772 AGTCATTAAG
Statistics
Matches: 257, Mismatches: 31, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
117 2 0.01
118 27 0.11
119 52 0.20
120 73 0.28
121 1 0.00
122 2 0.01
123 62 0.24
124 29 0.11
125 9 0.04
ACGTcount: A:0.26, C:0.11, G:0.18, T:0.44
Consensus pattern (120 bp):
TTTATTTTTCAAAGTTATTGAGCCTTTGATTAAAGGAGCATTTATTTTTCAAAGTTGTTGAGCCT
TTGATTAGATGAGCCTTTATTTTTCAAAGTTGTTGAACCTCTGTTTAGAAGAGCT
Found at i:24426897 original size:17 final size:17
Alignment explanation
Indices: 24426885--24426918 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
24426875 AAAAAACCAA
24426885 AAAACAAAAAAAAAAAG
1 AAAACAAAAAAAAAAAG
24426902 AAAACAAAACAAAAAAA
1 AAAACAAAA-AAAAAAA
24426919 TGAACATGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 9 0.56
18 7 0.44
ACGTcount: A:0.88, C:0.09, G:0.03, T:0.00
Consensus pattern (17 bp):
AAAACAAAAAAAAAAAG
Found at i:24429522 original size:23 final size:23
Alignment explanation
Indices: 24429489--24429532 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
24429479 GAGCTTGCTA
*
24429489 GGATTCAAATCCTAGTTTTTTTG
1 GGATTCAAATCCTAGATTTTTTG
*
24429512 GGATTCTAATCCTAGATTTTT
1 GGATTCAAATCCTAGATTTTT
24429533 AAGCCAAAAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.23, C:0.14, G:0.16, T:0.48
Consensus pattern (23 bp):
GGATTCAAATCCTAGATTTTTTG
Found at i:24429678 original size:10 final size:10
Alignment explanation
Indices: 24429660--24429696 Score: 56
Period size: 10 Copynumber: 3.6 Consensus size: 10
24429650 ACTGAACCAT
*
24429660 AAAAGAAAAG
1 AAAAAAAAAG
24429670 AAAAAAAAAG
1 AAAAAAAAAG
24429680 AAAAAAAAAGG
1 AAAAAAAAA-G
24429691 AAAAAA
1 AAAAAA
24429697 TATAATAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
10 18 0.72
11 7 0.28
ACGTcount: A:0.86, C:0.00, G:0.14, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:24429704 original size:3 final size:3
Alignment explanation
Indices: 24429698--24429727 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
24429688 AGGAAAAAAT
24429698 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
24429728 CAAAATGGTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:24430057 original size:44 final size:43
Alignment explanation
Indices: 24429881--24430207 Score: 275
Period size: 44 Copynumber: 7.2 Consensus size: 43
24429871 TCAATGACAT
* * *
24429881 TTTTGAAAATTTAAAAAGCTCCTCTGAGCAGAGGTTCAACGAA-
1 TTTTAAAAATTTAAAAAGCTCCTCTAAGCAGAGGCTCAAC-AAC
* * *
24429924 TTTTAAAAATTTAAAGAGGCTCCTCTAAGTAGAGGCTCAATAAC
1 TTTTAAAAATTTAAA-AAGCTCCTCTAAGCAGAGGCTCAACAAC
* * *
24429968 TTTTGAAAATTTAAAAAGGCTCATCTAAGCAGAGGCTTAACAAC
1 TTTTAAAAATTTAAAAA-GCTCCTCTAAGCAGAGGCTCAACAAC
* * *
24430012 TTTTGAAAATTTAAAAGAGCTCCTCTAAGTAGAGGCTCAATAAC
1 TTTTAAAAATTTAAAA-AGCTCCTCTAAGCAGAGGCTCAACAAC
* * * *
24430056 -TTTAAAATCCATCTTGAAAAAGCTCATCTAAACAGAAGCTCAATAAC
1 TTTTAAAA---AT-TT-AAAAAGCTCCTCTAAGCAGAGGCTCAACAAC
*
24430103 -TTTAAAAATTTATCTTGAAAAGCTCATCTAAGCAGAGGCTCAACAAC
1 TTTTAAAAATTTA-----AAAAGCTCCTCTAAGCAGAGGCTCAACAAC
* *
24430150 TTTTAAAAATTTATCCTGAAAAAGCTCCTCTAAGTAAAGGCTCAACAA-
1 TTTTAAAAA--T-T--T-AAAAAGCTCCTCTAAGCAGAGGCTCAACAAC
24430198 TTTTAAAAAT
1 TTTTAAAAAT
24430208 CCATCTTGAA
Statistics
Matches: 236, Mismatches: 27, Indels: 39
0.78 0.09 0.13
Matches are distributed among these distances:
42 1 0.00
43 25 0.11
44 96 0.41
45 1 0.00
46 3 0.01
47 59 0.25
48 21 0.09
49 26 0.11
50 1 0.00
51 1 0.00
53 1 0.00
54 1 0.00
ACGTcount: A:0.41, C:0.17, G:0.13, T:0.29
Consensus pattern (43 bp):
TTTTAAAAATTTAAAAAGCTCCTCTAAGCAGAGGCTCAACAAC
Found at i:24430097 original size:47 final size:48
Alignment explanation
Indices: 24430024--24430253 Score: 241
Period size: 48 Copynumber: 4.8 Consensus size: 48
24430014 TTGAAAATTT
* * *
24430024 AAAAGAGCTCCTCTAAGTAGAGGCTCAATAACTTT-AAAATCCATCTTG
1 AAAA-AGCTCATCTAAGCAGAAGCTCAATAACTTTAAAAATCCATCTTG
* **
24430072 AAAAAGCTCATCTAAACAGAAGCTCAATAACTTTAAAAATTTATCTTG
1 AAAAAGCTCATCTAAGCAGAAGCTCAATAACTTTAAAAATCCATCTTG
* * ** *
24430120 -AAAAGCTCATCTAAGCAGAGGCTCAACAACTTTTAAAAATTTATCCTG
1 AAAAAGCTCATCTAAGCAGAAGCTCAATAAC-TTTAAAAATCCATCTTG
* * * *
24430168 AAAAAGCTCCTCTAAGTA-AAGGCTCAACAATTTTAAAAATCCATCTTG
1 AAAAAGCTCATCTAAGCAGAA-GCTCAATAACTTTAAAAATCCATCTTG
** * *
24430216 AAAAAGCTTTTCTAAGCAGAAGCTTAATAATTTTAAAA
1 AAAAAGCTCATCTAAGCAGAAGCTCAATAACTTTAAAA
24430254 TCTCATATGT
Statistics
Matches: 155, Mismatches: 22, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
47 53 0.34
48 76 0.49
49 26 0.17
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.28
Consensus pattern (48 bp):
AAAAAGCTCATCTAAGCAGAAGCTCAATAACTTTAAAAATCCATCTTG
Found at i:24430193 original size:96 final size:97
Alignment explanation
Indices: 24429942--24430253 Score: 260
Period size: 96 Copynumber: 3.4 Consensus size: 97
24429932 ATTTAAAGAG
* * * *
24429942 GCTCCTCTAAGTAGAGGCTCAATAACTTTTGAAAAT---T--T-AAAAAGGCTCATCTAAGCAGA
1 GCTCATCTAAGCAGAGGCTCAATAACTTTTAAAAATCCATCCTGAAAAA-GCTCATCTAAACAGA
* * **
24430001 GGCTTAACAACTTTTGAAA---AT-TT-AAAAGA
65 AGCTCAACAACTTTAAAAATCCATCTTGAAAA-A
* * *
24430030 GCTCCTCTAAGTAGAGGCTCAATAAC-TTT-AAAATCCATCTTGAAAAAGCTCATCTAAACAGAA
1 GCTCATCTAAGCAGAGGCTCAATAACTTTTAAAAATCCATCCTGAAAAAGCTCATCTAAACAGAA
* **
24430093 GCTCAATAACTTTAAAAATTTATCTTG-AAAA
66 GCTCAACAACTTTAAAAATCCATCTTGAAAAA
* ** * **
24430124 GCTCATCTAAGCAGAGGCTCAACAACTTTTAAAAATTTATCCTGAAAAAGCTCCTCTAAGTA-AA
1 GCTCATCTAAGCAGAGGCTCAATAACTTTTAAAAATCCATCCTGAAAAAGCTCATCTAAACAGAA
*
24430188 GGCTCAACAATTTTAAAAATCCATCTTGAAAAA
66 -GCTCAACAACTTTAAAAATCCATCTTGAAAAA
** * *
24430221 GCTTTTCTAAGCAGAAGCTTAATAA-TTTTAAAA
1 GCTCATCTAAGCAGAGGCTCAATAACTTTTAAAA
24430254 TCTCATATGT
Statistics
Matches: 185, Mismatches: 24, Indels: 22
0.80 0.10 0.10
Matches are distributed among these distances:
86 5 0.03
87 3 0.02
88 26 0.14
89 1 0.01
91 29 0.16
92 5 0.03
94 26 0.14
95 10 0.05
96 56 0.30
97 24 0.13
ACGTcount: A:0.41, C:0.18, G:0.12, T:0.29
Consensus pattern (97 bp):
GCTCATCTAAGCAGAGGCTCAATAACTTTTAAAAATCCATCCTGAAAAAGCTCATCTAAACAGAA
GCTCAACAACTTTAAAAATCCATCTTGAAAAA
Found at i:24441981 original size:12 final size:11
Alignment explanation
Indices: 24441954--24441980 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
24441944 CAAAAATAGT
24441954 ATTTTAAAAAA
1 ATTTTAAAAAA
24441965 ATTTTAAAAAA
1 ATTTTAAAAAA
24441976 ATTTT
1 ATTTT
24441981 TTTTACTTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (11 bp):
ATTTTAAAAAA
Found at i:24444624 original size:26 final size:28
Alignment explanation
Indices: 24444586--24444643 Score: 75
Period size: 26 Copynumber: 2.1 Consensus size: 28
24444576 TTAGATATAG
* * *
24444586 TTAATTTATTATTTAAA-CAAAAA-TAT
1 TTAAATTAGTATTTAAATAAAAAATTAT
24444612 TTAAATTAGTATTTAAATAAAAAATTAT
1 TTAAATTAGTATTTAAATAAAAAATTAT
24444640 TTAA
1 TTAA
24444644 GAATTAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 15 0.56
27 5 0.19
28 7 0.26
ACGTcount: A:0.52, C:0.02, G:0.02, T:0.45
Consensus pattern (28 bp):
TTAAATTAGTATTTAAATAAAAAATTAT
Found at i:24446038 original size:6 final size:6
Alignment explanation
Indices: 24446027--24446058 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
24446017 ATTTATGAAC
*
24446027 CCTTCA CCTTCA TCTTCA CCTTCA CCTTCA CC
1 CCTTCA CCTTCA CCTTCA CCTTCA CCTTCA CC
24446059 AACGATTGGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.16, C:0.50, G:0.00, T:0.34
Consensus pattern (6 bp):
CCTTCA
Found at i:24446190 original size:2 final size:2
Alignment explanation
Indices: 24446183--24446219 Score: 65
Period size: 2 Copynumber: 18.5 Consensus size: 2
24446173 TGACTGTTTC
*
24446183 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
24446220 TTTAACACTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (2 bp):
TA
Found at i:24447835 original size:12 final size:12
Alignment explanation
Indices: 24447815--24447848 Score: 52
Period size: 11 Copynumber: 2.9 Consensus size: 12
24447805 TGTAAACAAA
*
24447815 TGAACTTTTTTT
1 TGAAATTTTTTT
24447827 TGAAA-TTTTTT
1 TGAAATTTTTTT
24447838 TGAAATTTTTT
1 TGAAATTTTTT
24447849 ATACAATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
11 11 0.55
12 9 0.45
ACGTcount: A:0.24, C:0.03, G:0.09, T:0.65
Consensus pattern (12 bp):
TGAAATTTTTTT
Found at i:24447837 original size:11 final size:11
Alignment explanation
Indices: 24447821--24447848 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
24447811 CAAATGAACT
24447821 TTTTTTTGAAA
1 TTTTTTTGAAA
24447832 TTTTTTTGAAA
1 TTTTTTTGAAA
24447843 TTTTTT
1 TTTTTT
24447849 ATACAATTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.07, T:0.71
Consensus pattern (11 bp):
TTTTTTTGAAA
Found at i:24450849 original size:25 final size:25
Alignment explanation
Indices: 24450812--24450888 Score: 100
Period size: 26 Copynumber: 2.9 Consensus size: 25
24450802 AAAAAATAAT
24450812 ATTAATATAATTATTAAAATATTAAAA
1 ATTAAT-T-ATTATTAAAATATTAAAA
* *
24450839 ATTATTTATTATTAAAATATATTAAA
1 ATTAATTATTATTAAAATAT-TAAAA
24450865 ATTAATTATTATTAAAATTATTAA
1 ATTAATTATTATTAAAA-TATTAA
24450889 TATTAAAATT
Statistics
Matches: 44, Mismatches: 4, Indels: 5
0.83 0.08 0.09
Matches are distributed among these distances:
25 13 0.30
26 23 0.52
27 8 0.18
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (25 bp):
ATTAATTATTATTAAAATATTAAAA
Found at i:24450868 original size:16 final size:16
Alignment explanation
Indices: 24450849--24450900 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 16
24450839 ATTATTTATT
24450849 ATTAAAATATATTAAA
1 ATTAAAATATATTAAA
*
24450865 ATT-AATTATTATTAAA
1 ATTAAAATA-TATTAAA
**
24450881 ATTATTA-ATATTAAA
1 ATTAAAATATATTAAA
24450896 ATTAA
1 ATTAA
24450901 TTATATTTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
15 15 0.52
16 14 0.48
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (16 bp):
ATTAAAATATATTAAA
Found at i:24450873 original size:26 final size:26
Alignment explanation
Indices: 24450812--24450894 Score: 107
Period size: 25 Copynumber: 3.2 Consensus size: 26
24450802 AAAAAATAAT
*
24450812 ATTAATATAATTATTAAAATAT-TAAAA
1 ATTAAT-T-ATTATTAAAATATATTAAA
*
24450839 ATTATTTATTATTAAAATATATTAAA
1 ATTAATTATTATTAAAATATATTAAA
*
24450865 ATTAATTATTATTAAAAT-TATTAAT
1 ATTAATTATTATTAAAATATATTAAA
24450890 ATTAA
1 ATTAA
24450895 AATTAATTAT
Statistics
Matches: 51, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
25 24 0.47
26 22 0.43
27 5 0.10
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (26 bp):
ATTAATTATTATTAAAATATATTAAA
Found at i:24450892 original size:15 final size:15
Alignment explanation
Indices: 24450857--24450943 Score: 70
Period size: 15 Copynumber: 5.5 Consensus size: 15
24450847 TTATTAAAAT
24450857 ATATTAAAATTAATTA
1 ATATTAAAATT-ATTA
*
24450873 TTATTAAAATTATTA
1 ATATTAAAATTATTA
24450888 ATATTAAAATTAATTA
1 ATATTAAAATT-ATTA
*
24450904 TATTTTAATAATAATATTTA
1 -ATATTAA-AAT--TA-TTA
*
24450924 ATA-TAAAAATATT-
1 ATATTAAAATTATTA
24450937 ATATTAA
1 ATATTAA
24450944 TATAAAAATA
Statistics
Matches: 59, Mismatches: 5, Indels: 16
0.74 0.06 0.20
Matches are distributed among these distances:
13 3 0.05
14 5 0.08
15 16 0.27
16 14 0.24
17 8 0.14
18 6 0.10
19 3 0.05
20 4 0.07
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATTAAAATTATTA
Found at i:24450945 original size:19 final size:19
Alignment explanation
Indices: 24450883--24450955 Score: 73
Period size: 19 Copynumber: 3.9 Consensus size: 19
24450873 TTATTAAAAT
*
24450883 TATTAATATTAAAATTAATTA
1 TATTAATA-TAAAAAT-ATTA
* *
24450904 TATT--T-TAATAATAATA
1 TATTAATATAAAAATATTA
24450920 T-TTAATATAAAAATATTA
1 TATTAATATAAAAATATTA
24450938 TATTAATATAAAAATATT
1 TATTAATATAAAAATATT
24450956 TAAAATAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 10
0.74 0.09 0.17
Matches are distributed among these distances:
15 2 0.05
16 4 0.09
17 6 0.14
18 10 0.23
19 17 0.40
21 4 0.09
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (19 bp):
TATTAATATAAAAATATTA
Found at i:24450954 original size:34 final size:35
Alignment explanation
Indices: 24450864--24450965 Score: 95
Period size: 34 Copynumber: 2.9 Consensus size: 35
24450854 AATATATTAA
* * *
24450864 AATTA-ATTATTATTAAAAT-TATTAATATTAAAATT
1 AATTATATTATAATAAAAATAT-TTAATA-TAAAAAT
* *
24450899 AATTATATTTTAATAATAATATTTAATATAAAAAT
1 AATTATATTATAATAAAAATATTTAATATAAAAAT
*
24450934 -ATTATATTA-ATATAAAAATATTTAAAATAAAA
1 AATTATATTATA-ATAAAAATATTTAATATAAAA
24450966 CTGTTTATTA
Statistics
Matches: 56, Mismatches: 8, Indels: 7
0.79 0.11 0.10
Matches are distributed among these distances:
33 1 0.02
34 27 0.48
35 11 0.20
36 16 0.29
37 1 0.02
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (35 bp):
AATTATATTATAATAAAAATATTTAATATAAAAAT
Found at i:24450972 original size:15 final size:15
Alignment explanation
Indices: 24450910--24450965 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
24450900 ATTATATTTT
*
24450910 AATAATAATATTTAA
1 AATAAAAATATTTAA
*
24450925 TATAAAAATATTATATTA
1 AATAAAAATATT-TA--A
24450943 ATATAAAAATATTTAA
1 A-ATAAAAATATTTAA
24450959 AATAAAA
1 AATAAAA
24450966 CTGTTTATTA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
15 16 0.47
16 4 0.12
18 3 0.09
19 11 0.32
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
AATAAAAATATTTAA
Found at i:24450991 original size:15 final size:15
Alignment explanation
Indices: 24450980--24451054 Score: 73
Period size: 15 Copynumber: 4.9 Consensus size: 15
24450970 TTATTATTTT
24450980 TATATTATTTATTAA
1 TATATTATTTATTAA
*
24450995 TATATTAGAATATTATTTA
1 TATATT---AT-TTATTAA
24451014 TATATTATTTATTAA
1 TATATTATTTATTAA
* *
24451029 TATGTTATTTA-TGA
1 TATATTATTTATTAA
24451043 -ATATTATTTATT
1 TATATTATTTATT
24451055 TAAAAGTAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
13 9 0.18
14 3 0.06
15 22 0.44
16 2 0.04
18 2 0.04
19 12 0.24
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (15 bp):
TATATTATTTATTAA
Found at i:24451024 original size:11 final size:11
Alignment explanation
Indices: 24450971--24451053 Score: 60
Period size: 11 Copynumber: 6.9 Consensus size: 11
24450961 TAAAACTGTT
*
24450971 TATTATTTTTA
1 TATTATTTATA
24450982 TATTATTTAT-
1 TATTATTTATA
* *
24450992 TAATATATTAGAA
1 TATTAT-TTA-TA
24451005 TATTATTTATA
1 TATTATTTATA
24451016 TATTATTTATTAA
1 TATTATTTA-T-A
24451029 TATGTTATTTATGAA
1 TA--TTATTTAT--A
24451044 TATTATTTAT
1 TATTATTTAT
24451054 TTAAAAGTAA
Statistics
Matches: 59, Mismatches: 5, Indels: 14
0.76 0.06 0.18
Matches are distributed among these distances:
10 5 0.08
11 22 0.37
12 4 0.07
13 16 0.27
14 1 0.02
15 11 0.19
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (11 bp):
TATTATTTATA
Done.