Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 156 of 195
Found at i:26035766 original size:28 final size:27
Alignment explanation
Indices: 26035735--26035800 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 27
26035725 AAAGTAATTA
26035735 TAATCAATTTCAATTTCATGGCCCTCAG
1 TAAT-AATTTCAATTTCATGGCCCTCAG
* *
26035763 TAATTATAATCAATTTCATGGCCCTCAG
1 TAATAAT-TTCAATTTCATGGCCCTCAG
26035791 TAATTAATTT
1 TAA-TAATTT
26035801 TCATTGGACA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
27 2 0.06
28 27 0.84
29 3 0.09
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (27 bp):
TAATAATTTCAATTTCATGGCCCTCAG
Found at i:26036470 original size:2 final size:2
Alignment explanation
Indices: 26036465--26036492 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
26036455 TACCTAAATC
26036465 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26036493 ACCAACATAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26039811 original size:22 final size:23
Alignment explanation
Indices: 26039765--26039821 Score: 91
Period size: 23 Copynumber: 2.5 Consensus size: 23
26039755 TAAATTAATG
26039765 TATTAAATAATAACTTTAATTAA
1 TATTAAATAATAACTTTAATTAA
26039788 TATTAAATAATAACTTT-ATTAA
1 TATTAAATAATAACTTTAATTAA
26039810 TA-TAATATAATA
1 TATTAA-ATAATA
26039822 TATATAAATA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
21 3 0.09
22 13 0.39
23 17 0.52
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.44
Consensus pattern (23 bp):
TATTAAATAATAACTTTAATTAA
Found at i:26045485 original size:21 final size:21
Alignment explanation
Indices: 26045460--26045502 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 21
26045450 AGTAGAAAAA
*
26045460 GAATAGAAGCATGCTAGAATT
1 GAATAGAAGCATGCTAAAATT
*
26045481 GAATAGAAGTATGCTAAAATT
1 GAATAGAAGCATGCTAAAATT
26045502 G
1 G
26045503 CAAAAGAACG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.44, C:0.07, G:0.23, T:0.26
Consensus pattern (21 bp):
GAATAGAAGCATGCTAAAATT
Found at i:26047390 original size:7 final size:7
Alignment explanation
Indices: 26047378--26047403 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
26047368 AGTTTTTTAA
26047378 AAAATAT
1 AAAATAT
26047385 AAAATAT
1 AAAATAT
26047392 AAAATAT
1 AAAATAT
26047399 AAAAT
1 AAAAT
26047404 TTATAAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (7 bp):
AAAATAT
Found at i:26047633 original size:34 final size:35
Alignment explanation
Indices: 26047589--26047675 Score: 92
Period size: 33 Copynumber: 2.5 Consensus size: 35
26047579 TTTATTTTTA
*
26047589 TATTTATATTTAATAAAATATTTAAA-AT-CATATT
1 TATTTTTATTTAATAAAA-ATTTAAATATCCATATT
*
26047623 TATTTTTATTT--TATAAATTTAAATATCCATATT
1 TATTTTTATTTAATAAAAATTTAAATATCCATATT
* *
26047656 TATGTTTATTAAGATAAAAA
1 TATTTTTATTTA-ATAAAAA
26047676 ATCGAATTTT
Statistics
Matches: 43, Mismatches: 5, Indels: 8
0.77 0.09 0.14
Matches are distributed among these distances:
31 7 0.16
32 6 0.14
33 15 0.35
34 10 0.23
36 5 0.12
ACGTcount: A:0.44, C:0.03, G:0.02, T:0.51
Consensus pattern (35 bp):
TATTTTTATTTAATAAAAATTTAAATATCCATATT
Found at i:26048678 original size:2 final size:2
Alignment explanation
Indices: 26048671--26048695 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26048661 TTGGAAACTT
26048671 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
26048696 CGAGTGGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:26048705 original size:120 final size:120
Alignment explanation
Indices: 26048576--26048804 Score: 413
Period size: 120 Copynumber: 1.9 Consensus size: 120
26048566 ACATTAGATA
26048576 CGAGTGGAAAAGTTCTATTGTTACTGTTTTCATTTTGAGTTCTTAGAGCACATTAGAATGTATTA
1 CGAGTGGAAAAGTTCTATTGTTACTGTTTTCATTTTGAGTTCTTAGAGCACATTAGAATGTATTA
* * *
26048641 CCTTCTGATATTACTGTAAATTGGAAACTTTATATATATATATATATATATATAT
66 CCTTCTGATATTACCGGAAATTGCAAACTTTATATATATATATATATATATATAT
*
26048696 CGAGTGGAAAAGTTCTATTGTTACTGTTTTCATTTTGAGTTCTTAGAGCACATTTGAATGTATTA
1 CGAGTGGAAAAGTTCTATTGTTACTGTTTTCATTTTGAGTTCTTAGAGCACATTAGAATGTATTA
*
26048761 CCTTCTGATATTACCGGAAATTGCAAACTTTATATTTATATATA
66 CCTTCTGATATTACCGGAAATTGCAAACTTTATATATATATATA
26048805 AAGTTTAGAC
Statistics
Matches: 104, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
120 104 1.00
ACGTcount: A:0.31, C:0.11, G:0.15, T:0.43
Consensus pattern (120 bp):
CGAGTGGAAAAGTTCTATTGTTACTGTTTTCATTTTGAGTTCTTAGAGCACATTAGAATGTATTA
CCTTCTGATATTACCGGAAATTGCAAACTTTATATATATATATATATATATATAT
Found at i:26050302 original size:51 final size:51
Alignment explanation
Indices: 26050226--26050376 Score: 275
Period size: 51 Copynumber: 3.0 Consensus size: 51
26050216 TACTATTATT
26050226 TTTGAAAATTTAGATCAAGTTCTCCAATGTTCTAGCTAGATTGGCCTCAGC
1 TTTGAAAATTTAGATCAAGTTCTCCAATGTTCTAGCTAGATTGGCCTCAGC
* *
26050277 TTTGAAAATTTAGATCAAGTTCTCCAATCTTCTTGCTAGATTGGCCTCAGC
1 TTTGAAAATTTAGATCAAGTTCTCCAATGTTCTAGCTAGATTGGCCTCAGC
*
26050328 TTTGAAAATTTAGAGCAAGTTCTCCAATGTTCTAGCTAGATTGGCCTCA
1 TTTGAAAATTTAGATCAAGTTCTCCAATGTTCTAGCTAGATTGGCCTCA
26050377 CGTTGGGTAA
Statistics
Matches: 95, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
51 95 1.00
ACGTcount: A:0.27, C:0.20, G:0.17, T:0.36
Consensus pattern (51 bp):
TTTGAAAATTTAGATCAAGTTCTCCAATGTTCTAGCTAGATTGGCCTCAGC
Found at i:26058377 original size:8 final size:8
Alignment explanation
Indices: 26058366--26058427 Score: 73
Period size: 7 Copynumber: 8.5 Consensus size: 8
26058356 ATAAAAAGGG
26058366 AAAACTAA
1 AAAACTAA
26058374 AAAACTAA
1 AAAACTAA
*
26058382 AAACCT-A
1 AAAACTAA
26058389 AAAA-TAA
1 AAAACTAA
26058396 AAAA-TAA
1 AAAACTAA
26058403 AAAA-TAA
1 AAAACTAA
26058410 AAAAC-AA
1 AAAACTAA
26058417 AAAAC-AA
1 AAAACTAA
26058424 AAAA
1 AAAA
26058428 AGAAAAAGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 5
0.88 0.04 0.09
Matches are distributed among these distances:
6 1 0.02
7 36 0.72
8 13 0.26
ACGTcount: A:0.81, C:0.10, G:0.00, T:0.10
Consensus pattern (8 bp):
AAAACTAA
Found at i:26058427 original size:7 final size:7
Alignment explanation
Indices: 26058366--26058440 Score: 62
Period size: 7 Copynumber: 10.4 Consensus size: 7
26058356 ATAAAAAGGG
26058366 AAAACTAA
1 AAAAC-AA
26058374 AAAACTAA
1 AAAAC-AA
* *
26058382 AAACCTA
1 AAAACAA
*
26058389 AAAATAA
1 AAAACAA
*
26058396 AAAATAA
1 AAAACAA
*
26058403 AAAATAA
1 AAAACAA
26058410 AAAACAA
1 AAAACAA
26058417 AAAACAA
1 AAAACAA
26058424 AAAA-AGA
1 AAAACA-A
*
26058431 AAAAGAA
1 AAAACAA
26058438 AAA
1 AAA
26058441 GAAAAAGAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
6 1 0.02
7 45 0.76
8 13 0.22
ACGTcount: A:0.81, C:0.08, G:0.03, T:0.08
Consensus pattern (7 bp):
AAAACAA
Found at i:26058433 original size:14 final size:14
Alignment explanation
Indices: 26058366--26058440 Score: 71
Period size: 14 Copynumber: 5.2 Consensus size: 14
26058356 ATAAAAAGGG
26058366 AAAACTAAAAAACTAA
1 AAAAC-AAAAAA-TAA
* *
26058382 AAACCTAAAAATAA
1 AAAACAAAAAATAA
*
26058396 AAAATAAAAAATAA
1 AAAACAAAAAATAA
*
26058410 AAAACAAAAAACAA
1 AAAACAAAAAATAA
*
26058424 AAAA-AGAAAAAGAA
1 AAAACA-AAAAATAA
26058438 AAA
1 AAA
26058441 GAAAAAGAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
13 1 0.02
14 40 0.80
15 5 0.10
16 4 0.08
ACGTcount: A:0.81, C:0.08, G:0.03, T:0.08
Consensus pattern (14 bp):
AAAACAAAAAATAA
Found at i:26058440 original size:22 final size:22
Alignment explanation
Indices: 26058388--26058453 Score: 57
Period size: 22 Copynumber: 3.0 Consensus size: 22
26058378 CTAAAAACCT
* * *
26058388 AAAAATAAAA-AATAAAAAATA
1 AAAAACAAAAGAAAAAAAAAGA
26058409 AAAAACAAAA-AACAAAAAAAGA
1 AAAAACAAAAGAA-AAAAAAAGA
*
26058431 AAAAGA-AAAAGAAAAAGAAAGA
1 AAAA-ACAAAAGAAAAAAAAAGA
26058453 A
1 A
26058454 GGTTTATTGG
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
21 11 0.29
22 24 0.63
23 3 0.08
ACGTcount: A:0.85, C:0.03, G:0.08, T:0.05
Consensus pattern (22 bp):
AAAAACAAAAGAAAAAAAAAGA
Found at i:26058446 original size:7 final size:7
Alignment explanation
Indices: 26058388--26058450 Score: 51
Period size: 7 Copynumber: 9.3 Consensus size: 7
26058378 CTAAAAACCT
*
26058388 AAAAATA
1 AAAAAGA
*
26058395 AAAAATA
1 AAAAAGA
*
26058402 AAAAATA
1 AAAAAGA
*
26058409 AAAAACA
1 AAAAAGA
*
26058416 AAAAACA
1 AAAAAGA
26058423 AAAAA-A
1 AAAAAGA
26058429 GAAAAAG-
1 -AAAAAGA
26058436 AAAAAG-
1 AAAAAGA
26058442 AAAAAGA
1 AAAAAGA
26058449 AA
1 AA
26058451 GAAGGTTTAT
Statistics
Matches: 52, Mismatches: 1, Indels: 6
0.88 0.02 0.10
Matches are distributed among these distances:
6 13 0.25
7 39 0.75
ACGTcount: A:0.86, C:0.03, G:0.06, T:0.05
Consensus pattern (7 bp):
AAAAAGA
Found at i:26058447 original size:6 final size:6
Alignment explanation
Indices: 26058424--26058450 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
26058414 CAAAAAACAA
26058424 AAAAAG AAAAAG AAAAAG AAAAAG AAA
1 AAAAAG AAAAAG AAAAAG AAAAAG AAA
26058451 GAAGGTTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAAG
Found at i:26058825 original size:29 final size:31
Alignment explanation
Indices: 26058770--26058842 Score: 80
Period size: 29 Copynumber: 2.4 Consensus size: 31
26058760 TATAATGAAT
*
26058770 GATATATAAATATGATATTTTTCTTAA-ATTAA
1 GATATATAAATA-GATAATTTTCTTAATA-TAA
*
26058802 GATAT-TAAATA-ATAATTTTGTTAATATAA
1 GATATATAAATAGATAATTTTCTTAATATAA
*
26058831 TATATATAAATA
1 GATATATAAATA
26058843 TAAAATAATA
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
29 18 0.50
30 7 0.19
31 6 0.17
32 5 0.14
ACGTcount: A:0.48, C:0.01, G:0.05, T:0.45
Consensus pattern (31 bp):
GATATATAAATAGATAATTTTCTTAATATAA
Found at i:26058833 original size:5 final size:5
Alignment explanation
Indices: 26058823--26058885 Score: 58
Period size: 5 Copynumber: 12.4 Consensus size: 5
26058813 ATAATTTTGT
* *
26058823 TAATA TAATA T-ATA TAAATA TAAAA TAATA AAATA TAATA TAAAATA
1 TAATA TAATA TAATA T-AATA TAATA TAATA TAATA TAATA T--AATA
*
26058870 TAATT TAATA T-ATA TA
1 TAATA TAATA TAATA TA
26058886 GTGAAAGCAA
Statistics
Matches: 47, Mismatches: 6, Indels: 10
0.75 0.10 0.16
Matches are distributed among these distances:
4 8 0.17
5 30 0.64
6 4 0.09
7 5 0.11
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
TAATA
Found at i:26058848 original size:7 final size:7
Alignment explanation
Indices: 26058824--26058872 Score: 57
Period size: 7 Copynumber: 7.0 Consensus size: 7
26058814 TAATTTTGTT
26058824 AATATAA
1 AATATAA
*
26058831 TATATATA
1 AATATA-A
26058839 AATATAA
1 AATATAA
26058846 AATAATAA
1 AAT-ATAA
26058854 AATAT--
1 AATATAA
26058859 AATATAA
1 AATATAA
26058866 AATATAA
1 AATATAA
26058873 TTTAATATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
5 5 0.14
7 18 0.50
8 13 0.36
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (7 bp):
AATATAA
Found at i:26058867 original size:12 final size:12
Alignment explanation
Indices: 26058829--26058883 Score: 58
Period size: 12 Copynumber: 4.5 Consensus size: 12
26058819 TTGTTAATAT
26058829 AATAT-ATATAA
1 AATATAATATAA
*
26058840 ATATAAAATAATAA
1 A-ATATAAT-ATAA
26058854 AATATAATATAA
1 AATATAATATAA
*
26058866 AATATAATTTAA
1 AATATAATATAA
*
26058878 TATATA
1 AATATA
26058884 TAGTGAAAGC
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
11 1 0.03
12 23 0.62
13 8 0.22
14 5 0.14
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AATATAATATAA
Found at i:26066172 original size:11 final size:11
Alignment explanation
Indices: 26066156--26066185 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
26066146 AATATCATAA
26066156 ATCATTAGTTT
1 ATCATTAGTTT
26066167 ATCATTAGTTT
1 ATCATTAGTTT
*
26066178 ATCGTTAG
1 ATCATTAG
26066186 CTATGGTCAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.27, C:0.10, G:0.13, T:0.50
Consensus pattern (11 bp):
ATCATTAGTTT
Found at i:26069545 original size:22 final size:20
Alignment explanation
Indices: 26069508--26069552 Score: 54
Period size: 22 Copynumber: 2.1 Consensus size: 20
26069498 AATGTTTTTA
*
26069508 TATTTTTTATTGTTATTCTT
1 TATTTTTTATTGTTATTATT
*
26069528 TATTTTTTAAATTTTTATTATT
1 TATTTTTT--ATTGTTATTATT
26069550 TAT
1 TAT
26069553 ATGTGTATAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
20 8 0.38
22 13 0.62
ACGTcount: A:0.22, C:0.02, G:0.02, T:0.73
Consensus pattern (20 bp):
TATTTTTTATTGTTATTATT
Found at i:26069624 original size:12 final size:12
Alignment explanation
Indices: 26069599--26069632 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
26069589 TTTATCTTTC
26069599 TTTATATTTT-TT
1 TTTA-ATTTTATT
26069611 TTTAATTTTATT
1 TTTAATTTTATT
26069623 TTTAATTTTA
1 TTTAATTTTA
26069633 ATTATCTTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (12 bp):
TTTAATTTTATT
Found at i:26073347 original size:17 final size:17
Alignment explanation
Indices: 26073325--26073357 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26073315 TTGTTTCATA
26073325 GTTTTT-TTTCTTTTTTG
1 GTTTTTGTTT-TTTTTTG
26073342 GTTTTTGTTTTTTTTT
1 GTTTTTGTTTTTTTTT
26073358 TCTAAAAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 12 0.80
18 3 0.20
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (17 bp):
GTTTTTGTTTTTTTTTG
Found at i:26073871 original size:121 final size:121
Alignment explanation
Indices: 26073547--26073859 Score: 321
Period size: 121 Copynumber: 2.6 Consensus size: 121
26073537 AAAAAAATCC
* * *
26073547 AAAAACCATATTTTTTTATATAGAAACATGAT-TTTAGAAAAGCCAAAGCCTATATTTGTTAGCT
1 AAAAACCACA-TTTCTTATATAGAAACATGATCTTT-GAAAAGTCAAAGCCTATATTTGTTAGCT
* * **
26073611 TCACTTTTAACATTATATTGCTTATGATATGTAATTTTTTAATATAATACAAAAATAA
64 CCACTTTAAACATTATATTGCTTATGATATGTAATTTTGGAATATAATACAAAAATAA
* * * * * * *
26073669 AAAAACCACATTTCTTACATAGAAACGTGGTCTTTGAAATGTCAAAGCTTGTTTTTGTTAG--CC
1 AAAAACCACATTTCTTATATAGAAACATGATCTTTGAAAAGTCAAAGCCTATATTTGTTAGCTCC
* * *
26073732 ACGTTTTAAACATTATATTGCTTATGATACT-TAGTTTTGGAATGTAATCCAAAAA-AA
66 AC--TTTAAACATTATATTGCTTATGATA-TGTAATTTTGGAATATAATACAAAAATAA
* * ** * * *
26073789 TACAAACTATGTTTCTTATATAGAAACATGATCTTTGAAAAGTTAAAGCCTATAGTTGTCAGCTC
1 -AAAAACCACATTTCTTATATAGAAACATGATCTTTGAAAAGTCAAAGCCTATATTTGTTAGCTC
26073854 CACTTT
65 CACTTT
26073860 GAATGTTATA
Statistics
Matches: 153, Mismatches: 31, Indels: 15
0.77 0.16 0.08
Matches are distributed among these distances:
119 3 0.02
120 2 0.01
121 131 0.86
122 13 0.08
123 4 0.03
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.38
Consensus pattern (121 bp):
AAAAACCACATTTCTTATATAGAAACATGATCTTTGAAAAGTCAAAGCCTATATTTGTTAGCTCC
ACTTTAAACATTATATTGCTTATGATATGTAATTTTGGAATATAATACAAAAATAA
Found at i:26078580 original size:32 final size:32
Alignment explanation
Indices: 26078544--26078639 Score: 131
Period size: 32 Copynumber: 3.0 Consensus size: 32
26078534 CTTACAGAAA
* *
26078544 AAGAATTCTAAAAGAAAAGTGATTCTTGATAG
1 AAGAATTCTAAGAGAAAAATGATTCTTGATAG
* **
26078576 AAGAATTTTAAGAGAAAAAAAATTCTTGATA-
1 AAGAATTCTAAGAGAAAAATGATTCTTGATAG
26078607 AGAGAATTCTAAGAGAAAAATGATTCTTGATAG
1 A-AGAATTCTAAGAGAAAAATGATTCTTGATAG
26078640 GTAAGTTAGT
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
31 1 0.02
32 53 0.98
ACGTcount: A:0.49, C:0.05, G:0.18, T:0.28
Consensus pattern (32 bp):
AAGAATTCTAAGAGAAAAATGATTCTTGATAG
Found at i:26083299 original size:14 final size:14
Alignment explanation
Indices: 26083280--26083309 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
26083270 AAAAAAAATT
26083280 AAAGAGAGAGAGAG
1 AAAGAGAGAGAGAG
26083294 AAAGAGAGAGAGAG
1 AAAGAGAGAGAGAG
26083308 AA
1 AA
26083310 TGGAATTGGC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (14 bp):
AAAGAGAGAGAGAG
Found at i:26084370 original size:3 final size:3
Alignment explanation
Indices: 26084362--26084395 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
26084352 CTTTTTGGTT
26084362 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
1 TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC TTC T
26084396 ATCTAAATAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.00, C:0.32, G:0.00, T:0.68
Consensus pattern (3 bp):
TTC
Found at i:26085450 original size:28 final size:28
Alignment explanation
Indices: 26085399--26085457 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
26085389 AAATATCGTA
* * *
26085399 AAACTTAAGAAATAATTATGATAATTAT
1 AAACTTAAGAAATAATAATAATAACTAT
26085427 AAACTTAATGAAATAA-AATAATAACTAT
1 AAACTTAA-GAAATAATAATAATAACTAT
26085455 AAA
1 AAA
26085458 AAGATATTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
28 20 0.74
29 7 0.26
ACGTcount: A:0.59, C:0.05, G:0.05, T:0.31
Consensus pattern (28 bp):
AAACTTAAGAAATAATAATAATAACTAT
Found at i:26087798 original size:16 final size:16
Alignment explanation
Indices: 26087773--26087803 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26087763 AAAATAGCCT
26087773 CAACTACATCAGCCAC
1 CAACTACATCAGCCAC
*
26087789 CAACTGCATCAGCCA
1 CAACTACATCAGCCA
26087804 TCCATACATT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.42, G:0.10, T:0.13
Consensus pattern (16 bp):
CAACTACATCAGCCAC
Found at i:26089130 original size:61 final size:62
Alignment explanation
Indices: 26089075--26089236 Score: 183
Period size: 61 Copynumber: 2.7 Consensus size: 62
26089065 TTTAAATAAT
*
26089075 ATTATTTAAGGT-ATTTTTAATCAAAAACA-CTTTAAATAATCTTTAATATTTTTTAAAGGAA
1 ATTATTTAAGGTCATTTTTAATCAAAAACATC-TTAAATAATCTCTAATATTTTTTAAAGGAA
* ** **
26089136 ATTATTTAAGGTCTTTTTTTGTCAAAAACATCTTAAATAATCTCTAAT-TTTTTTAAAGGGG
1 ATTATTTAAGGTCATTTTTAATCAAAAACATCTTAAATAATCTCTAATATTTTTTAAAGGAA
* *
26089197 ATTATTTAAAG-CATTTTGATAA--AAAAAAATCTTAAATAAT
1 ATTATTTAAGGTCATTTT--TAATCAAAAACATCTTAAATAAT
26089237 ATCGTTCACT
Statistics
Matches: 86, Mismatches: 11, Indels: 9
0.81 0.10 0.08
Matches are distributed among these distances:
60 22 0.26
61 33 0.38
62 30 0.35
63 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.08, T:0.43
Consensus pattern (62 bp):
ATTATTTAAGGTCATTTTTAATCAAAAACATCTTAAATAATCTCTAATATTTTTTAAAGGAA
Found at i:26089778 original size:60 final size:60
Alignment explanation
Indices: 26089701--26089975 Score: 257
Period size: 60 Copynumber: 4.5 Consensus size: 60
26089691 TTTTGTAAAA
* * *
26089701 GATTATTTAAGGGATTTTCTAGCCAAAAAAACCTTAAATAATCTCAAAAAAATTGAATAT
1 GATTATTTAAGGCATTTTTTAGCCAAAAAAACCTTAAATAATCTCAAAAAAATTGAACAT
* **** * *
26089761 GATTATTTAAGGTATTTTTTAGCCAAAAAATACCTTAAATAATCTCATTTAATTTTTTGTAGA-
1 GATTATTTAAGGCATTTTTTAGCCAAAAAA-ACCTTAAATAATCTCA---AAAAAATTGAACAT
* * *
26089824 GAATTATTTAAGGCGTTTTTTAGCTAAAAATACCTTAAATAATC-CTAAAAAAATTGAACAT
1 G-ATTATTTAAGGCATTTTTTAGCCAAAAAAACCTTAAATAATCTC-AAAAAAATTGAACAT
* * *** *
26089885 GATTATTTAAGGCATTTTTCAGCTAGAAAATGGCTTAAATAATCTTTAAAAAAAATTGAACAT
1 GATTATTTAAGGCATTTTTTAGCCA-AAAAAACCTTAAATAATC--TCAAAAAAATTGAACAT
* *
26089948 GATTATTTAAGGTATTTTTCATGCCAAA
1 GATTATTTAAGGCATTTTTTA-GCCAAA
26089976 TGCCATTAAT
Statistics
Matches: 178, Mismatches: 25, Indels: 21
0.79 0.11 0.09
Matches are distributed among these distances:
60 57 0.32
61 33 0.19
62 1 0.01
63 52 0.29
64 35 0.20
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.37
Consensus pattern (60 bp):
GATTATTTAAGGCATTTTTTAGCCAAAAAAACCTTAAATAATCTCAAAAAAATTGAACAT
Found at i:26089819 original size:124 final size:124
Alignment explanation
Indices: 26089687--26089929 Score: 339
Period size: 124 Copynumber: 2.0 Consensus size: 124
26089677 GGTACTAATC
26089687 AATTTTTTGTAAA-AGATTATTTAAGG-GATTTTCTAGCCAAAAAAACCTTAAATAAT-CTCAAA
1 AATTTTTTGTAAAGA-ATTATTTAAGGCG-TTTTCTAGCCAAAAAAACCTTAAATAATCCT-AAA
* * *
26089749 AAAATTGAATATGATTATTTAAGGTATTTTTTAGCCAAAAAATACCTTAAATAATCTCATTT
63 AAAATTGAACATGATTATTTAAGGCATTTTTCAGCCAAAAAATACCTTAAATAATCTCATTT
* * * *
26089811 AATTTTTTGTAGAGAATTATTTAAGGCGTTTTTTAGCTAAAAATACCTTAAATAATCCTAAAAAA
1 AATTTTTTGTAAAGAATTATTTAAGGCGTTTTCTAGCCAAAAAAACCTTAAATAATCCTAAAAAA
* * **
26089876 ATTGAACATGATTATTTAAGGCATTTTTCAGCTAGAAAATGGCTTAAATAATCT
66 ATTGAACATGATTATTTAAGGCATTTTTCAGCCAAAAAATACCTTAAATAATCT
26089930 TTAAAAAAAA
Statistics
Matches: 105, Mismatches: 11, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
124 101 0.96
125 4 0.04
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (124 bp):
AATTTTTTGTAAAGAATTATTTAAGGCGTTTTCTAGCCAAAAAAACCTTAAATAATCCTAAAAAA
ATTGAACATGATTATTTAAGGCATTTTTCAGCCAAAAAATACCTTAAATAATCTCATTT
Found at i:26089954 original size:63 final size:60
Alignment explanation
Indices: 26089701--26089968 Score: 245
Period size: 63 Copynumber: 4.3 Consensus size: 60
26089691 TTTTGTAAAA
* * * *
26089701 GATTATTTAAGGGA-TTTTCTAGCCAAAAAAACCTTAAATAAT-CTCAAAAAAATTGAATAT
1 GATTATTTAAGGCATTTTTC-AGCTAAAAATACCTTAAATAATCCT-AAAAAAATTGAACAT
* * * * **** * *
26089761 GATTATTTAAGGTATTTTTTAGCCAAAAAATACCTTAAATAATCTCATTTAATTTTTTGTAGA-
1 GATTATTTAAGGCATTTTTCAG-CTAAAAATACCTTAAATAATC-C--TAAAAAAATTGAACAT
* *
26089824 GAATTATTTAAGGCGTTTTTTAGCTAAAAATACCTTAAATAATCCTAAAAAAATTGAACAT
1 G-ATTATTTAAGGCATTTTTCAGCTAAAAATACCTTAAATAATCCTAAAAAAATTGAACAT
** *
26089885 GATTATTTAAGGCATTTTTCAGCTAGAAAATGGCTTAAATAATCTTTAAAAAAAATTGAACAT
1 GATTATTTAAGGCATTTTTCAGCTA-AAAATACCTTAAATAATC-CT-AAAAAAATTGAACAT
*
26089948 GATTATTTAAGGTATTTTTCA
1 GATTATTTAAGGCATTTTTCA
26089969 TGCCAAATGC
Statistics
Matches: 170, Mismatches: 27, Indels: 19
0.79 0.12 0.09
Matches are distributed among these distances:
60 45 0.26
61 39 0.23
62 2 0.01
63 57 0.34
64 26 0.15
65 1 0.01
ACGTcount: A:0.41, C:0.10, G:0.11, T:0.38
Consensus pattern (60 bp):
GATTATTTAAGGCATTTTTCAGCTAAAAATACCTTAAATAATCCTAAAAAAATTGAACAT
Found at i:26090976 original size:16 final size:17
Alignment explanation
Indices: 26090951--26090987 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
26090941 TATATTTTTT
*
26090951 AAAAATTTAATT-AATA
1 AAAAAATTAATTAAATA
26090967 AAAAAATTAATTAAATA
1 AAAAAATTAATTAAATA
26090984 AAAA
1 AAAA
26090988 TATTGATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 11 0.58
17 8 0.42
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (17 bp):
AAAAAATTAATTAAATA
Found at i:26092011 original size:15 final size:15
Alignment explanation
Indices: 26091991--26092020 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26091981 GGTATTTTAC
26091991 TTTAATTTTCTTAAT
1 TTTAATTTTCTTAAT
*
26092006 TTTAATTTTTTTAAT
1 TTTAATTTTCTTAAT
26092021 AATAATAGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTAATTTTCTTAAT
Found at i:26098262 original size:12 final size:12
Alignment explanation
Indices: 26098245--26098275 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
26098235 AATGTTTCAA
26098245 AAAAAAAAAAGG
1 AAAAAAAAAAGG
26098257 AAAAAAAAAAGG
1 AAAAAAAAAAGG
26098269 AAAAAAA
1 AAAAAAA
26098276 GCAAAGAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAGG
Found at i:26100427 original size:104 final size:104
Alignment explanation
Indices: 26100238--26100428 Score: 258
Period size: 104 Copynumber: 1.8 Consensus size: 104
26100228 ACCTCTAGGC
* ** * * * * *
26100238 AAAATATTTTAAATTTTTAAAGCTTCAATGCCTCTATTACGAGGATCATTCAAAGATTTTGAGAT
1 AAAACATTTTAAATTTTTAAAGCTTCAACACCTCTACTACAAAGAGCATTCAAAGATTTTAAGAT
* *
26100303 TTTTAAGACCTTCGAACATAATTTTTAAGATCTTTGAGT
66 TTGTAAGACCTTCCAACATAATTTTTAAGATCTTTGAGT
* *
26100342 AAAACATTTTAAATTTTTAATGTTTCAACACCTCTACTACAAAGAGCATTCAAAGATTTTAAGAT
1 AAAACATTTTAAATTTTTAAAGCTTCAACACCTCTACTACAAAGAGCATTCAAAGATTTTAAGAT
26100407 TTGTAAGACC-TCCAAGCATAAT
66 TTGTAAGACCTTCCAA-CATAAT
26100429 CTCTAAGACT
Statistics
Matches: 74, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
103 4 0.05
104 70 0.95
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (104 bp):
AAAACATTTTAAATTTTTAAAGCTTCAACACCTCTACTACAAAGAGCATTCAAAGATTTTAAGAT
TTGTAAGACCTTCCAACATAATTTTTAAGATCTTTGAGT
Found at i:26100654 original size:126 final size:124
Alignment explanation
Indices: 26100340--26100815 Score: 459
Period size: 126 Copynumber: 3.8 Consensus size: 124
26100330 AGATCTTTGA
*
26100340 GTAAAACATTTTAAATTTTTAATGTTTCAACACCTCTACTACAAAGAGCATTCAAAGATTTTAAG
1 GTAAAACATTTTAAATTTTTAAAGTTTCAACACCTCTACTAC-AAGAGCATTCAAAGATTTTAAG
* ** * * * * * *
26100405 ATTTGTAAGACCTCCAAGCATAATCTCTAAGACTTTTAGGCAAAATTTCTAAGACCTCTAAG
65 ATTTGTAAGACTTCCGGGCATAATCTCTAAGACTCTGA-GCATAATTTATAAAACCT-TCAG
* ** * * *
26100467 TTAAAACATTTTAAATTTTTAAAGTTTCAACACCTCTACTATGAGAAGCGTTTAAAGATTTTGAG
1 GTAAAACATTTTAAATTTTTAAAGTTTCAACACCTCTACTACAAG-AGCATTCAAAGATTTTAAG
* * * **
26100532 ATTCGTAGGACTTCCGGGCAAAATCTCTAAGATCTCTGAATATAATTTATAAAACCTTCAG
65 ATTTGTAAGACTTCCGGGCATAATCTCTAAGA-CTCTGAGCATAATTTATAAAACCTTCAG
* * * * * *
26100593 GCAAAATATTTTAAATTTTTTAAGTTTCAACGCCTCTACTACGATGAGCATTCAAATATTTTAAG
1 GTAAAACATTTTAAATTTTTAAAGTTTCAACACCTCTACTAC-AAGAGCATTCAAAGATTTTAAG
* * ** * * * * *
26100658 ATTTGTAAGATTTTCGGATATAATCTATAAGACCTCTGGGCATAATCTATAAAACTTTCAT
65 ATTTGTAAGACTTCCGGGCATAATCTCTAAGA-CTCTGAGCATAATTTATAAAACCTTCAG
* * * * * * *
26100719 GTAAAATATTTTAAAATTTTAAAGTTTTAATACATCTACTACAAGGACCATTCAAAGATTTTGAG
1 GTAAAACATTTTAAATTTTTAAAGTTTCAACACCTCTACTACAA-GAGCATTCAAAGATTTTAAG
* *
26100784 ATTTGTAAGACCTT-TGGGCATAATTTCTAAGA
65 ATTTGTAAGA-CTTCCGGGCATAATCTCTAAGA
26100816 TTTATGAGCA
Statistics
Matches: 279, Mismatches: 65, Indels: 11
0.79 0.18 0.03
Matches are distributed among these distances:
125 1 0.00
126 177 0.63
127 97 0.35
128 4 0.01
ACGTcount: A:0.37, C:0.15, G:0.12, T:0.36
Consensus pattern (124 bp):
GTAAAACATTTTAAATTTTTAAAGTTTCAACACCTCTACTACAAGAGCATTCAAAGATTTTAAGA
TTTGTAAGACTTCCGGGCATAATCTCTAAGACTCTGAGCATAATTTATAAAACCTTCAG
Found at i:26100930 original size:104 final size:103
Alignment explanation
Indices: 26100685--26100932 Score: 268
Period size: 104 Copynumber: 2.4 Consensus size: 103
26100675 ATATAATCTA
* * * * * *
26100685 TAAGACCTCTGGGCATAATCTATAAAACTTTCATGTAAAATATTTTAAAATTTTAAAGTTTTAAT
1 TAAGACCTCTGGGCATAATCTTTAAGAC-TTCAAGCAAAACATTTTAAAATTTTAAAGTTTTAAC
26100750 ACATCTACTACAAGGACCATTCAAAGATTTTGAGATTTG
65 ACATCTACTACAAGGACCATTCAAAGATTTTGAGATTTG
* * * *
26100789 TAAGACCTTTGGGCATAAT-TTCTAAGA-TTTATGAGCAAAGCATTTTAAATTTTTAAAGTTTTA
1 TAAGACCTCTGGGCATAATCTT-TAAGACTTCA--AGCAAAACATTTTAAAATTTTAAAGTTTTA
* * * * * *
26100852 ACGCCTCTGCTATAGGGAGCATTCAAA-ATTTTTGAGATTTG
63 ACACATCTACTACAAGGACCATTCAAAGA-TTTTGAGATTTG
*
26100893 TAAGACCTCTGGGCATAATCTTTAAGTACTCCAAGCAAAA
1 TAAGACCTCTGGGCATAATCTTTAAG-ACTTCAAGCAAAA
26100933 TTCGTGAGTC
Statistics
Matches: 117, Mismatches: 20, Indels: 14
0.77 0.13 0.09
Matches are distributed among these distances:
102 3 0.03
103 2 0.02
104 107 0.91
105 3 0.03
106 2 0.02
ACGTcount: A:0.35, C:0.15, G:0.15, T:0.35
Consensus pattern (103 bp):
TAAGACCTCTGGGCATAATCTTTAAGACTTCAAGCAAAACATTTTAAAATTTTAAAGTTTTAACA
CATCTACTACAAGGACCATTCAAAGATTTTGAGATTTG
Found at i:26101481 original size:56 final size:56
Alignment explanation
Indices: 26101382--26101487 Score: 137
Period size: 56 Copynumber: 1.9 Consensus size: 56
26101372 TTAATTAAAA
* *
26101382 AATTATAAAAAATATATACAAATAATTAATTAATTAATCAAATT-ATTATTACTAC
1 AATTATAAAAAATATAAACAAATAATTAATTAATTAATAAAATTAATTATTACTAC
*
26101437 AATTACTAAAAAATATAAAATAAAT-ATTAATTAATTACA-AAAATTAATTAT
1 AATTA-TAAAAAATAT-AAACAAATAATTAATTAATTA-ATAAAATTAATTAT
26101488 CAATTAAAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 6
0.83 0.06 0.11
Matches are distributed among these distances:
55 5 0.11
56 27 0.61
57 12 0.27
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.37
Consensus pattern (56 bp):
AATTATAAAAAATATAAACAAATAATTAATTAATTAATAAAATTAATTATTACTAC
Found at i:26103411 original size:23 final size:23
Alignment explanation
Indices: 26103385--26103454 Score: 86
Period size: 23 Copynumber: 2.9 Consensus size: 23
26103375 AATAAATTTA
26103385 CTGGTATTTTTTTTGTATTTTTG
1 CTGGTATTTTTTTTGTATTTTTG
* *
26103408 CTGGTATTTTTTTGGTGTTTTTG
1 CTGGTATTTTTTTTGTATTTTTG
*
26103431 TTGGTATTTATTTTCTGATATTTT
1 CTGGTATTT-TTTT-TG-TATTTT
26103455 CTTGGTGTGA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
23 29 0.74
24 4 0.10
25 1 0.03
26 5 0.13
ACGTcount: A:0.10, C:0.04, G:0.19, T:0.67
Consensus pattern (23 bp):
CTGGTATTTTTTTTGTATTTTTG
Found at i:26103414 original size:12 final size:11
Alignment explanation
Indices: 26103386--26103444 Score: 64
Period size: 12 Copynumber: 5.1 Consensus size: 11
26103376 ATAAATTTAC
26103386 TGGTATTTTTT
1 TGGTATTTTTT
* *
26103397 TTGTATTTTTGC
1 TGGTATTTTT-T
26103409 TGGTATTTTTT
1 TGGTATTTTTT
*
26103420 TGGTGTTTTTGT
1 TGGTATTTTT-T
26103432 TGGTATTTATTT
1 TGGTATTT-TTT
26103444 T
1 T
26103445 CTGATATTTT
Statistics
Matches: 39, Mismatches: 6, Indels: 5
0.78 0.12 0.10
Matches are distributed among these distances:
11 18 0.46
12 19 0.49
13 2 0.05
ACGTcount: A:0.08, C:0.02, G:0.20, T:0.69
Consensus pattern (11 bp):
TGGTATTTTTT
Found at i:26104702 original size:64 final size:63
Alignment explanation
Indices: 26104473--26104702 Score: 193
Period size: 64 Copynumber: 3.7 Consensus size: 63
26104463 ATTTTTTTTT
* * * * *
26104473 GAGATTATTTAAGGTATTTTT-AGTCAAAAATGCCTTGAGTAATTA-TATCATAAAAAATTATTA
1 GAGATTATTAAAGGTGTTTTTGA-TCAAAAATGCCTTAAATAATCACT-TCATAAAAAATTATTA
* * * * * *
26104536 GGGAATTATTAAAGGTGTTTTTAACCAGAAATGCCTTTAATAATCTCATT-A-AAAAAATT-TTA
1 GAG-ATTATTAAAGGTGTTTTTGATCAAAAATGCCTTAAATAATCAC-TTCATAAAAAATTATTA
* * * * * * *
26104598 -TGATTATTTAAGGTGTTTTTGGTTAAAAACGTCTTAAATAATCACTTCATAAAAAATTATAAA
1 GAGATTATTAAAGGTGTTTTTGATCAAAAATGCCTTAAATAATCACTTCATAAAAAATTAT-TA
* *
26104661 GAGATTATTAAAGGTGTTTTTGATCAAAAATACCTTCAATAA
1 GAGATTATTAAAGGTGTTTTTGATCAAAAATGCCTTAAATAA
26104703 CCCAATTAAA
Statistics
Matches: 129, Mismatches: 29, Indels: 17
0.74 0.17 0.10
Matches are distributed among these distances:
59 2 0.02
60 34 0.26
61 9 0.07
62 4 0.03
63 11 0.09
64 66 0.51
65 2 0.02
66 1 0.01
ACGTcount: A:0.41, C:0.08, G:0.13, T:0.38
Consensus pattern (63 bp):
GAGATTATTAAAGGTGTTTTTGATCAAAAATGCCTTAAATAATCACTTCATAAAAAATTATTA
Found at i:26104755 original size:378 final size:377
Alignment explanation
Indices: 26104048--26104778 Score: 825
Period size: 378 Copynumber: 1.9 Consensus size: 377
26104038 AGGCGTTTGG
* *
26104048 TTTTTGGCTATAAATGCCTTCAATAACCTCATTAAAAATTTTTTTTCAAGATTATTTAATGCATT
1 TTTTTGGCTAGAAATGCCTTCAATAACCTCATTAAAAATTTTTTTTCAAGATTATTTAAGGCATT
* *
26104113 TTTTACGAAAAACGTCTTGAGTAATCACATCATAAAAATTTATGAAGGGACTATTAAAGGTATTT
66 TTTTACGAAAAACGCCTTGAGTAATCACATCATAAAAAATTATGAAGGGACTATTAAAGGTATTT
*** * * * *
26104178 TTGGTCATAAATCCTTTAATAACCTCATTTAAAATTTTTTTGGGGATTATTCAAAACGTTTTTGG
131 TTAACCAGAAATCCTTTAATAACCTCATTAAAAAATTTTAT--GGATTATTCAAAACGTTTTTGG
* * * * * * *
26104243 TTAAAAACGCATTGAGTAATTATGTCATAAAAATTTATGAGGGATTACTAAAGGTGTTTTTGGTC
194 TTAAAAACGCATTAAATAATCATGTCATAAAAAATTATAAGAGATTACTAAAGGTGTTTTTGATC
* ** * * * **
26104308 AAAAATGCCTTCCTTAATCCTATTAAAATTTTTTTTCGAAATTATTCAAAGTGTTTTTAATAAAA
259 AAAAATACCTTCAATAACCCAATTAAAATTTTTTTTCAAAATTATTCAAAGCATTTTTAATAAAA
*
26104373 AATACATTGAGTAATCACATTATAAAAAAAAAAATGAAAGGATTATTGAAAGTA
324 AATACATTGAGTAATCACATCATAAAAAAAAAAATGAAAGGATTATTGAAAGTA
* * ** *
26104427 TTTTTTGCTAGAAATGCCTTCAAT-AGCTCCATT-AAAATTTTTTTTTGAGATTATTTAAGGTA-
1 TTTTTGGCTAGAAATGCCTTCAATAACCT-CATTAAAAATTTTTTTTCAAGATTATTTAAGGCAT
* * * * *
26104489 TTTTTA-GTCAAAAATGCCTTGAGTAATTATATCATAAAAAATTAT-TAGGGAATTATTAAAGGT
65 TTTTTACG--AAAAACGCCTTGAGTAATCACATCATAAAAAATTATGAAGGG-ACTATTAAAGGT
* * * ***
26104552 GTTTTTAACCAGAAATGCCTTTAATAATCTCATTAAAAAAATTTTAT-GATTATTTAAGGTGTTT
127 ATTTTTAACCAGAAAT-CCTTTAATAACCTCATT-AAAAAATTTTATGGATTATTCAAAACGTTT
*
26104616 TTGGTTAAAAACGTC-TTAAATAATCACT-TCATAAAAAATTATAAAGAGATTATTAAAGGTGTT
190 TTGGTTAAAAACG-CATTAAATAATCA-TGTCATAAAAAATTAT-AAGAGATTACTAAAGGTGTT
*
26104679 TTTGATCAAAAATACCTTCAATAACCCAATTAAAAATTTTTTTT-AAAATTATTCAAGGCATTTT
252 TTTGATCAAAAATACCTTCAATAACCCAATT-AAAATTTTTTTTCAAAATTATTCAAAGCATTTT
* * * * *
26104743 TGGA-GAAAAATACCTTTAGTAATCATATCATAAAAA
316 T-AATAAAAAATACATTGAGTAATCACATCATAAAAA
26104779 TTTATGAAGG
Statistics
Matches: 291, Mismatches: 50, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
376 1 0.00
377 57 0.20
378 169 0.58
379 55 0.19
380 9 0.03
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.39
Consensus pattern (377 bp):
TTTTTGGCTAGAAATGCCTTCAATAACCTCATTAAAAATTTTTTTTCAAGATTATTTAAGGCATT
TTTTACGAAAAACGCCTTGAGTAATCACATCATAAAAAATTATGAAGGGACTATTAAAGGTATTT
TTAACCAGAAATCCTTTAATAACCTCATTAAAAAATTTTATGGATTATTCAAAACGTTTTTGGTT
AAAAACGCATTAAATAATCATGTCATAAAAAATTATAAGAGATTACTAAAGGTGTTTTTGATCAA
AAATACCTTCAATAACCCAATTAAAATTTTTTTTCAAAATTATTCAAAGCATTTTTAATAAAAAA
TACATTGAGTAATCACATCATAAAAAAAAAAATGAAAGGATTATTGAAAGTA
Found at i:26104828 original size:126 final size:125
Alignment explanation
Indices: 26104059--26104828 Score: 520
Period size: 126 Copynumber: 6.1 Consensus size: 125
26104049 TTTTGGCTAT
* * *
26104059 AAATGCCTTCAATAACCTCATTAAAAATTTTTTTTCAAGATTATTTAATGCATTTTT-TACGAAA
1 AAATGCCTTCAATAACC-CATTAAAAATTTTTTTT-AAGATTATTCAAGGCATTTTTGGA-GAAA
* * * * * ** *
26104123 AACGTCTTGAGTAATCACATCATAAAAATTTATGAAGGGACTATTAAAGGTATTTTTGGTCAT
63 AACGCCTTGAGTAATCATATCATAAAAAATTATGAAGGGATTATTAAAGGTGTTTTTGACCAG
* * *** ** * **
26104186 AAAT-CCTTTAATAACCTCATTTAAAATTTTTTTGGGGATTATTCAAAACGTTTTTGGTTAAAAA
1 AAATGCCTTCAATAACC-CATTAAAAATTTTTTTTAAGATTATTCAAGGCATTTTTGGAGAAAAA
* * * * * ** *
26104250 CGCATTGAGTAATTATGTCATAAAAATTTATG-AGGGATTACTAAAGGTGTTTTTGGTCAA
65 CGCCTTGAGTAATCATATCATAAAAAATTATGAAGGGATTATTAAAGGTGTTTTTGACCAG
** * * ** * *
26104310 AAATGCCTTCCTTAATCCTATT-AAAATTTTTTTTCGAA-ATTATTCAAAGTGTTTTT-AATAAA
1 AAATGCCTTCAATAA-CCCATTAAAAATTTTTTTT--AAGATTATTCAAGGCATTTTTGGA-GAA
** * * * ** * *
26104372 AAATACATTGAGTAATCACATTATAAAAAAAAAAATGAAAGGATTATTGAAA-GTATTTTTTG-C
62 AAACGCCTTGAGTAATCATATCAT--AAAAAATTATGAAGGGATTATT-AAAGGT-GTTTTTGAC
*
26104435 TAG
123 CAG
* * * * * * **
26104438 AAATGCCTTCAATAGCTCCATTAAAATTTTTTTTTGAGATTATTTAAGGTATTTTTAGTCAAAAA
1 AAATGCCTTCAATAAC-CCATTAAAAATTTTTTTTAAGATTATTCAAGGCATTTTTGGAGAAAAA
* * * *
26104503 TGCCTTGAGTAATTATATCATAAAAAATTAT-TAGGGAATTATTAAAGGTGTTTTTAACCAG
65 CGCCTTGAGTAATCATATCATAAAAAATTATGAAGGG-ATTATTAAAGGTGTTTTTGACCAG
* * ** * * ** **
26104564 AAATGCCTTTAATAATCTCATTAAAAA--AATTTTATGATTATTTAAGGTGTTTTTGGTTAAAAA
1 AAATGCCTTCAATAA-CCCATTAAAAATTTTTTTTAAGATTATTCAAGGCATTTTTGGAGAAAAA
* * * * * * *
26104627 CGTCTTAAATAATCACT-TCATAAAAAATTATAAAGAGATTATTAAAGGTGTTTTTGATCAA
65 CGCCTTGAGTAATCA-TATCATAAAAAATTATGAAGGGATTATTAAAGGTGTTTTTGACCAG
* *
26104688 AAATACCTTCAATAACCCAATTAAAAATTTTTTTTAAAATTATTCAAGGCATTTTTGGAGAAAAA
1 AAATGCCTTCAATAACCC-ATTAAAAATTTTTTTTAAGATTATTCAAGGCATTTTTGGAGAAAAA
** * * * * *
26104753 TACCTTTAGTAATCATATCATAAAAATTTATGAAGGGATTATTGAAGGCGTTTTTAACCAG
65 CGCCTTGAGTAATCATATCATAAAAAATTATGAAGGGATTATTAAAGGTGTTTTTGACCAG
* *
26104814 AAACGCCTTGAATAA
1 AAATGCCTTCAATAA
26104829 TCTCGAAGAA
Statistics
Matches: 497, Mismatches: 121, Indels: 51
0.74 0.18 0.08
Matches are distributed among these distances:
123 2 0.00
124 134 0.27
125 109 0.22
126 154 0.31
127 15 0.03
128 63 0.13
129 20 0.04
ACGTcount: A:0.39, C:0.10, G:0.12, T:0.38
Consensus pattern (125 bp):
AAATGCCTTCAATAACCCATTAAAAATTTTTTTTAAGATTATTCAAGGCATTTTTGGAGAAAAAC
GCCTTGAGTAATCATATCATAAAAAATTATGAAGGGATTATTAAAGGTGTTTTTGACCAG
Found at i:26105338 original size:20 final size:20
Alignment explanation
Indices: 26105299--26105338 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26105289 TTTAATTGGG
* *
26105299 TTATTGAAGGCATTTTTAGC
1 TTATTAAAGGCATTTCTAGC
*
26105319 TTATTAAAGGCGTTTCTAGC
1 TTATTAAAGGCATTTCTAGC
26105339 CAAAAACGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.25, C:0.12, G:0.20, T:0.42
Consensus pattern (20 bp):
TTATTAAAGGCATTTCTAGC
Found at i:26108661 original size:22 final size:22
Alignment explanation
Indices: 26108633--26108676 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
26108623 TTAAATCTTC
*
26108633 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
*
26108655 CTTAATTCTAGAGATATAAATA
1 CTTAATTCTAGAGATACAAATA
26108677 TAAATATACA
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:26109604 original size:46 final size:45
Alignment explanation
Indices: 26109451--26109607 Score: 183
Period size: 45 Copynumber: 3.5 Consensus size: 45
26109441 TGCAAAGGAG
* * * *
26109451 ATGATATTGTTTTGGAAGGAAAGAGTTTTGATGTTACATCTGAAA
1 ATGATACTGTTTTGGAAGGAAAGAGTTTTGATCTTGCATCAGAAA
* **
26109496 ACGATACTGTTTCAGAAGGAAAGA-TTATTGATCTTGCATCAG-AA
1 ATGATACTGTTTTGGAAGGAAAGAGTT-TTGATCTTGCATCAGAAA
* * *
26109540 ATGATAATGTTTTGGAAGGAAAGAGGGTTTGATCCTGCATCAGAAA
1 ATGATACTGTTTTGGAAGGAAAGA-GTTTTGATCTTGCATCAGAAA
*
26109586 ATGGTACTGTTTTGGAAGGAAA
1 ATGATACTGTTTTGGAAGGAAA
26109608 TAGCACTGAA
Statistics
Matches: 93, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
44 24 0.26
45 46 0.49
46 23 0.25
ACGTcount: A:0.34, C:0.08, G:0.25, T:0.32
Consensus pattern (45 bp):
ATGATACTGTTTTGGAAGGAAAGAGTTTTGATCTTGCATCAGAAA
Found at i:26110187 original size:22 final size:22
Alignment explanation
Indices: 26110159--26110202 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
26110149 ACAAGTTCTT
26110159 TTATTTAGCATTGATGTTTGCA
1 TTATTTAGCATTGATGTTTGCA
*
26110181 TTATTTAGCGTTGATGTTTGCA
1 TTATTTAGCATTGATGTTTGCA
26110203 AAATTTTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.20, C:0.09, G:0.20, T:0.50
Consensus pattern (22 bp):
TTATTTAGCATTGATGTTTGCA
Found at i:26110208 original size:22 final size:22
Alignment explanation
Indices: 26110161--26110208 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 22
26110151 AAGTTCTTTT
**
26110161 ATTTAGCATTGATGTTTGCATT
1 ATTTAGCATTGATGTTTGCAAA
*
26110183 ATTTAGCGTTGATGTTTGCAAA
1 ATTTAGCATTGATGTTTGCAAA
26110205 ATTT
1 ATTT
26110209 TAAATGTTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.25, C:0.08, G:0.19, T:0.48
Consensus pattern (22 bp):
ATTTAGCATTGATGTTTGCAAA
Found at i:26113580 original size:15 final size:16
Alignment explanation
Indices: 26113555--26113590 Score: 58
Period size: 15 Copynumber: 2.4 Consensus size: 16
26113545 ATTAGATGAT
26113555 TAAAA-AATAAATATA
1 TAAAATAATAAATATA
26113570 -AAAATAATAAATATA
1 TAAAATAATAAATATA
26113585 TAAAAT
1 TAAAAT
26113591 TTTATGAGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.21
15 10 0.53
16 5 0.26
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (16 bp):
TAAAATAATAAATATA
Found at i:26113750 original size:29 final size:28
Alignment explanation
Indices: 26113709--26113766 Score: 80
Period size: 28 Copynumber: 2.0 Consensus size: 28
26113699 TAAAAAGTTT
26113709 TGTGACATCTGAATTTAAAAATTTTTTAA
1 TGTGACATCTGAA-TTAAAAATTTTTTAA
* * *
26113738 TGTGATATTTGAATTATAAATTTTTTAA
1 TGTGACATCTGAATTAAAAATTTTTTAA
26113766 T
1 T
26113767 TAATATGATA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.36, C:0.03, G:0.10, T:0.50
Consensus pattern (28 bp):
TGTGACATCTGAATTAAAAATTTTTTAA
Found at i:26113779 original size:27 final size:28
Alignment explanation
Indices: 26113718--26113772 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
26113708 TTGTGACATC
* * *
26113718 TGAATTTAAAAATTTTTTAATGTGATATT
1 TGAA-TTATAAATTTTTTAATGTAATATA
26113747 TGAATTATAAATTTTTTAAT-TAATAT
1 TGAATTATAAATTTTTTAATGTAATAT
26113773 GATAATTGAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 5 0.21
28 15 0.62
29 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.07, T:0.53
Consensus pattern (28 bp):
TGAATTATAAATTTTTTAATGTAATATA
Found at i:26119375 original size:13 final size:13
Alignment explanation
Indices: 26119357--26119381 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26119347 TTAGAACAGA
26119357 AAAAATAAAAAAT
1 AAAAATAAAAAAT
26119370 AAAAATAAAAAA
1 AAAAATAAAAAA
26119382 AGATTGAATT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.00, T:0.12
Consensus pattern (13 bp):
AAAAATAAAAAAT
Found at i:26120666 original size:28 final size:27
Alignment explanation
Indices: 26120635--26120687 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
26120625 TATTAACAAT
26120635 AAAAATAAATT-ATATTAATTTTAAATTC
1 AAAAATAAATTCA-ATTAA-TTTAAATTC
* *
26120663 AAAATTTAATTCAATTAATTTAAAT
1 AAAAATAAATTCAATTAATTTAAAT
26120688 AATTATTTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
27 7 0.32
28 14 0.64
29 1 0.05
ACGTcount: A:0.53, C:0.04, G:0.00, T:0.43
Consensus pattern (27 bp):
AAAAATAAATTCAATTAATTTAAATTC
Found at i:26121804 original size:24 final size:24
Alignment explanation
Indices: 26121777--26121830 Score: 58
Period size: 24 Copynumber: 2.2 Consensus size: 24
26121767 ACGTAGAAGC
*
26121777 AATATATC-ACAATCAACCTAT-AAT
1 AATATA-CAACAATCAA-CAATCAAT
*
26121801 AATAGACAACAATCAACAATCAAT
1 AATATACAACAATCAACAATCAAT
26121825 AATATA
1 AATATA
26121831 AGAAAAATAA
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
23 4 0.16
24 21 0.84
ACGTcount: A:0.56, C:0.19, G:0.02, T:0.24
Consensus pattern (24 bp):
AATATACAACAATCAACAATCAAT
Found at i:26122240 original size:34 final size:34
Alignment explanation
Indices: 26122202--26122269 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
26122192 CTTTCTTTCC
26122202 TTAGTTTGAGGCACTATCTTGTTTTTCTACCTTA
1 TTAGTTTGAGGCACTATCTTGTTTTTCTACCTTA
26122236 TTAGTTTGAGGCACTATCTTGTTTTTCTACCTTA
1 TTAGTTTGAGGCACTATCTTGTTTTTCTACCTTA
26122270 AAATAACCTC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.18, C:0.18, G:0.15, T:0.50
Consensus pattern (34 bp):
TTAGTTTGAGGCACTATCTTGTTTTTCTACCTTA
Found at i:26123571 original size:16 final size:17
Alignment explanation
Indices: 26123550--26123584 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
26123540 TAGAAAAATT
26123550 ATTTTTGT-TATTTAAA
1 ATTTTTGTATATTTAAA
26123566 ATTTTTGTAATATTTAAA
1 ATTTTTGT-ATATTTAAA
26123584 A
1 A
26123585 AAGAATAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.47
18 9 0.53
ACGTcount: A:0.37, C:0.00, G:0.06, T:0.57
Consensus pattern (17 bp):
ATTTTTGTATATTTAAA
Found at i:26124647 original size:11 final size:11
Alignment explanation
Indices: 26124631--26124661 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
26124621 ATGTATGAAT
26124631 TATTATATATA
1 TATTATATATA
26124642 TATTATATATA
1 TATTATATATA
26124653 TA-TATATAT
1 TATTATATAT
26124662 GTTTGACAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 7 0.35
11 13 0.65
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (11 bp):
TATTATATATA
Found at i:26125245 original size:21 final size:22
Alignment explanation
Indices: 26125208--26125255 Score: 80
Period size: 21 Copynumber: 2.2 Consensus size: 22
26125198 TTTTAATTAT
*
26125208 ATATATTTATATTTAAAAAATA
1 ATATTTTTATATTTAAAAAATA
26125230 ATATTTTTAT-TTTAAAAAATA
1 ATATTTTTATATTTAAAAAATA
26125251 ATATT
1 ATATT
26125256 CTATTAATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
21 16 0.64
22 9 0.36
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
ATATTTTTATATTTAAAAAATA
Found at i:26126640 original size:31 final size:30
Alignment explanation
Indices: 26126586--26126650 Score: 76
Period size: 31 Copynumber: 2.1 Consensus size: 30
26126576 ATATATGAGT
* * * *
26126586 TTAATTATTTAGTTAAATTATAATTTATTAA
1 TTAATTATTTAATGAAATAATAATTAATT-A
*
26126617 TTAATTATTTAATGAAGTAATAATTAATTA
1 TTAATTATTTAATGAAATAATAATTAATTA
26126647 TTAA
1 TTAA
26126651 ATTTATTATA
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 5 0.17
31 24 0.83
ACGTcount: A:0.45, C:0.00, G:0.05, T:0.51
Consensus pattern (30 bp):
TTAATTATTTAATGAAATAATAATTAATTA
Found at i:26127299 original size:23 final size:23
Alignment explanation
Indices: 26127273--26127323 Score: 84
Period size: 23 Copynumber: 2.2 Consensus size: 23
26127263 ATTTTTAAAA
* *
26127273 AATTTAAACGCATAATTTTTGGT
1 AATTTAAACGCATAATTATGGGT
26127296 AATTTAAACGCATAATTATGGGT
1 AATTTAAACGCATAATTATGGGT
26127319 AATTT
1 AATTT
26127324 TTAAAAAATG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.37, C:0.08, G:0.14, T:0.41
Consensus pattern (23 bp):
AATTTAAACGCATAATTATGGGT
Found at i:26131036 original size:459 final size:459
Alignment explanation
Indices: 26130178--26131099 Score: 1727
Period size: 459 Copynumber: 2.0 Consensus size: 459
26130168 CTAAAAAGCA
26130178 TACAAGACACCTACATTACAGGAATATAAACAGCTCTTTAACTGTTCAGATTGGAAATTCAGAGA
1 TACAAGACACCTACATTACAGGAATATAAACAGCTCTTTAACTGTTCAGATTGGAAATTCAGAGA
26130243 ATTTAATGCAGCAGAACCATTTAGAAACAAAATTTTTGGCTAAAAACCAGAGCATGCTTTCTATT
66 ATTTAATGCAGCAGAACCATTTAGAAACAAAATTTTTGGCTAAAAACCAGAGCATGCTTTCTATT
*
26130308 TATGCAAAAATAATCAATAGCCTAACAAGAACAAAACATTCCAGTTAGACATACTACTAACCTCA
131 TATGCAAAAAAAATCAATAGCCTAACAAGAACAAAACATTCCAGTTAGACATACTACTAACCTCA
26130373 CTTACTCCTCTATGAATTGCAGCTTCTAGACATTTAATGAACCTTTCTTTCTCTCCTTCAGTATC
196 CTTACTCCTCTATGAATTGCAGCTTCTAGACATTTAATGAACCTTTCTTTCTCTCCTTCAGTATC
26130438 AAGTGTGCAGCCATCCATGTGCCGAATAAAATATTCCTACAATTTGAAAACCATTAAAATAATTT
261 AAGTGTGCAGCCATCCATGTGCCGAATAAAATATTCCTACAATTTGAAAACCATTAAAATAATTT
** *
26130503 ATGCACATGTAATCAATCCTACACAATTTTTGGATTTCGAGAGTGATCAAAGGATGGATATCATT
326 ATGCACATGTAATCAATCCTACACAATTTTTGGATTTAAAGAGTGATCAAAGAATGGATATCATT
26130568 ATAAAAAATCTACAATGAATGGCTGAGCCATGGAAACTTAACTGTCCCAAAAGAAAACTTATATC
391 ATAAAAAATCTACAATGAATGGCTGAGCCATGGAAACTTAACTGTCCCAAAAGAAAACTTATATC
26130633 TCAT
456 TCAT
26130637 TACAAGACACCTACATTACAGGAATATAAACAGCTCTTTAACTGTTCAGATTGGAAATTCAGAGA
1 TACAAGACACCTACATTACAGGAATATAAACAGCTCTTTAACTGTTCAGATTGGAAATTCAGAGA
26130702 ATTTAATGCAGCAGAACCATTTAGAAACAAAATTTTTGGCTAAAAACCAGAGCATGCTTTCTATT
66 ATTTAATGCAGCAGAACCATTTAGAAACAAAATTTTTGGCTAAAAACCAGAGCATGCTTTCTATT
* *
26130767 TATGCAAAAAAAATCAATAGCTTAACAAGAACAGAACATTCCAGTTAGACATACTACTAACCTCA
131 TATGCAAAAAAAATCAATAGCCTAACAAGAACAAAACATTCCAGTTAGACATACTACTAACCTCA
* *
26130832 CTTACTCTTCTATGAATTGCAGCTTCTAGCCATTTAATGAACCTTTCTTTCTCTCCTTCAGTATC
196 CTTACTCCTCTATGAATTGCAGCTTCTAGACATTTAATGAACCTTTCTTTCTCTCCTTCAGTATC
* * * *
26130897 AAGTGTGCGGCCATCCGTGTGTCGAATAAAATATTCCTACAATTTGGAAACCATTAAAATAATTT
261 AAGTGTGCAGCCATCCATGTGCCGAATAAAATATTCCTACAATTTGAAAACCATTAAAATAATTT
*
26130962 ATGCACATGTAATGAATCCTACACAATTTTTGGATTTAAAGAGTGATCAAAGAATGGATATCATT
326 ATGCACATGTAATCAATCCTACACAATTTTTGGATTTAAAGAGTGATCAAAGAATGGATATCATT
26131027 ATAAAAAATCTACAATGAATGGCTGAGCCATGGAAACTTAACTGTCCCAAAAGAAAACTTATATC
391 ATAAAAAATCTACAATGAATGGCTGAGCCATGGAAACTTAACTGTCCCAAAAGAAAACTTATATC
26131092 TCAT
456 TCAT
26131096 TACA
1 TACA
26131100 GTCGAGCATG
Statistics
Matches: 450, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
459 450 1.00
ACGTcount: A:0.38, C:0.19, G:0.13, T:0.30
Consensus pattern (459 bp):
TACAAGACACCTACATTACAGGAATATAAACAGCTCTTTAACTGTTCAGATTGGAAATTCAGAGA
ATTTAATGCAGCAGAACCATTTAGAAACAAAATTTTTGGCTAAAAACCAGAGCATGCTTTCTATT
TATGCAAAAAAAATCAATAGCCTAACAAGAACAAAACATTCCAGTTAGACATACTACTAACCTCA
CTTACTCCTCTATGAATTGCAGCTTCTAGACATTTAATGAACCTTTCTTTCTCTCCTTCAGTATC
AAGTGTGCAGCCATCCATGTGCCGAATAAAATATTCCTACAATTTGAAAACCATTAAAATAATTT
ATGCACATGTAATCAATCCTACACAATTTTTGGATTTAAAGAGTGATCAAAGAATGGATATCATT
ATAAAAAATCTACAATGAATGGCTGAGCCATGGAAACTTAACTGTCCCAAAAGAAAACTTATATC
TCAT
Found at i:26133523 original size:1 final size:1
Alignment explanation
Indices: 26133517--26133541 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
26133507 TGAATTTTCC
26133517 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
26133542 CCTCATACCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:26136716 original size:20 final size:21
Alignment explanation
Indices: 26136669--26136718 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
26136659 TTCGAAATTA
26136669 ATAAATATTATTTTTTAAAAT
1 ATAAATATTATTTTTTAAAAT
26136690 ATAAAATATTA-TTTTTAAAAT
1 AT-AAATATTATTTTTTAAAAT
26136711 ATAAATAT
1 ATAAATAT
26136719 ATAAATATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
20 6 0.21
21 14 0.50
22 8 0.29
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (21 bp):
ATAAATATTATTTTTTAAAAT
Found at i:26136804 original size:18 final size:18
Alignment explanation
Indices: 26136772--26136815 Score: 65
Period size: 17 Copynumber: 2.6 Consensus size: 18
26136762 TTAGATCTAA
*
26136772 TTAAATTT-TTTTAAAAT
1 TTAAATTTAATTTAAAAT
26136789 TTAAATTTAATTTAAAAT
1 TTAAATTTAATTTAAAAT
26136807 TT-AATTTAA
1 TTAAATTTAA
26136816 AAAATAAATA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 15 0.60
18 10 0.40
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (18 bp):
TTAAATTTAATTTAAAAT
Found at i:26136808 original size:12 final size:12
Alignment explanation
Indices: 26136786--26136817 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
26136776 ATTTTTTTAA
26136786 AATTT-AAATTT
1 AATTTAAAATTT
26136797 AATTTAAAATTT
1 AATTTAAAATTT
26136809 AATTTAAAA
1 AATTTAAAA
26136818 AATAAATAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
AATTTAAAATTT
Found at i:26145702 original size:44 final size:45
Alignment explanation
Indices: 26145647--26145755 Score: 136
Period size: 44 Copynumber: 2.4 Consensus size: 45
26145637 TTTTTTTATT
26145647 TTTTATTTTATTTTTAAAATTTTTAC-CATTTGAG-CTAATTTA-AAA
1 TTTT-TTTTATTTTTAAAATTTTT-CTCATTTGAGTCT-ATTTAGAAA
26145692 TTTTTTTTATTTTT-AAATTTTTCTTCATTTGAGTCTATTTAGAAA
1 TTTTTTTTATTTTTAAAATTTTTC-TCATTTGAGTCTATTTAGAAA
*
26145737 TTTTTTTTATCTTTGAAAA
1 TTTTTTTTAT-TTTTAAAA
26145756 GAAAACAATA
Statistics
Matches: 57, Mismatches: 1, Indels: 10
0.84 0.01 0.15
Matches are distributed among these distances:
42 1 0.02
43 8 0.14
44 23 0.40
45 19 0.33
46 3 0.05
47 3 0.05
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (45 bp):
TTTTTTTTATTTTTAAAATTTTTCTCATTTGAGTCTATTTAGAAA
Found at i:26146218 original size:17 final size:17
Alignment explanation
Indices: 26146185--26146224 Score: 55
Period size: 17 Copynumber: 2.4 Consensus size: 17
26146175 AAGCCATTTT
26146185 AAAAATAAAAATAAAAA
1 AAAAATAAAAATAAAAA
*
26146202 ATAAATAAAAA-ACAAAA
1 AAAAATAAAAATA-AAAA
26146219 AAAAAT
1 AAAAAT
26146225 CATCTCGGCT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 1 0.05
17 19 0.95
ACGTcount: A:0.85, C:0.03, G:0.00, T:0.12
Consensus pattern (17 bp):
AAAAATAAAAATAAAAA
Found at i:26147706 original size:56 final size:56
Alignment explanation
Indices: 26147576--26147955 Score: 401
Period size: 57 Copynumber: 6.7 Consensus size: 56
26147566 TTATGCAGAG
* * *
26147576 AAAATTGATACTTTCAACTTTTCTCCAAAATATTTTTTAGAAATTTTAATCTCGAA-A
1 AAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTT-GAAAATTTAATTTC-AAGA
* * * *
26147633 AAAATTGATACTTTCAACTTTTCTCCAAAATATCTTTTGAAACTTTAATTTCGAGA
1 AAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTTGAAAATTTAATTTCAAGA
** * * *
26147689 AAAATTGATACTTTCAACTTTTCCTCAAAACCA--TTTTAAAAATTTATTTTTAAGGA
1 AAAATTGATACTTTCAACTTTT-CTCAAAAATATTTTTTGAAAATTTAATTTCAA-GA
** *
26147745 AAAA-TGATACTTTCAACTTTTTCTCAAAAATATTTTTTTGGAAACCTTAATTTCGAGA
1 AAAATTGATACTTTCAAC-TTTTCTCAAAAATA-TTTTTT-GAAAATTTAATTTCAAGA
* * *
26147803 AAAATTAATACTTTCAACTTTTCCTCAAAAACT-TTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTT-CTCAAAAA-TATTTTTTGAAAATTTAATTTCAAGA
** * *
26147860 AAAATTGATACTTTCAACTTTTTCTCAAAAACCTTTTTTGAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAAC-TTTTCTCAAAAATATTTTTTGAAAATTTAATTTCAAGA
* * *
26147917 AAAATTGATACTTTCAATTTTTTTTCGAAAATATTTTTT
1 AAAATTGATACTTTCAA-CTTTTCTCAAAAATATTTTTT
26147956 TTGGATTTTA
Statistics
Matches: 276, Mismatches: 33, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
55 37 0.13
56 45 0.16
57 139 0.50
58 24 0.09
59 30 0.11
60 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (56 bp):
AAAATTGATACTTTCAACTTTTCTCAAAAATATTTTTTGAAAATTTAATTTCAAGA
Found at i:26147981 original size:5 final size:5
Alignment explanation
Indices: 26147973--26148082 Score: 59
Period size: 5 Copynumber: 21.6 Consensus size: 5
26147963 TTATTTAAAG
*
26147973 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAAT AAAGA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAA-AT
* * * *
26148022 AAAAT AAAGA- AAAGT AAAACA AAAACA AAAAT AAAAT AAAGAT AAAAG
1 AAAAT AAA-AT AAAAT AAAA-T AAAA-T AAAAT AAAAT AAA-AT AAAAT
* *
26148070 AATAT TAAAT AAA
1 AAAAT AAAAT AAA
26148083 CTTAATCTAA
Statistics
Matches: 82, Mismatches: 12, Indels: 22
0.71 0.10 0.19
Matches are distributed among these distances:
3 3 0.04
4 5 0.06
5 51 0.62
6 19 0.23
7 4 0.05
ACGTcount: A:0.76, C:0.03, G:0.06, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:26147998 original size:10 final size:9
Alignment explanation
Indices: 26147968--26148068 Score: 71
Period size: 10 Copynumber: 10.6 Consensus size: 9
26147958 GGATTTTATT
*
26147968 TAAAGAAAA
1 TAAAAAAAA
*
26147977 T-AAAATAA
1 TAAAAAAAA
26147985 TAAAACAAAA
1 TAAAA-AAAA
26147995 TAAAAGTGAAAA
1 TAAAA---AAAA
26148007 TAAAAAAAA
1 TAAAAAAAA
26148016 TAAAGAAAAA
1 TAAA-AAAAA
*
26148026 TAAAGAAAAG
1 TAAA-AAAAA
*
26148036 TAAAACAAA
1 TAAAAAAAA
*
26148045 -AACAAAAA
1 TAAAAAAAA
26148053 TAAAATAAAGA
1 TAAAA-AAA-A
26148064 TAAAA
1 TAAAA
26148069 GAATATTAAA
Statistics
Matches: 74, Mismatches: 10, Indels: 14
0.76 0.10 0.14
Matches are distributed among these distances:
8 12 0.16
9 18 0.24
10 29 0.39
11 6 0.08
12 9 0.12
ACGTcount: A:0.77, C:0.03, G:0.07, T:0.13
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:26148007 original size:30 final size:31
Alignment explanation
Indices: 26147972--26148029 Score: 84
Period size: 31 Copynumber: 1.9 Consensus size: 31
26147962 TTTATTTAAA
*
26147972 GAAAAT-AAAATAATAAA-ACAAAATAAAAGT
1 GAAAATAAAAAAAATAAAGA-AAAATAAAAGT
26148002 GAAAATAAAAAAAATAAAGAAAAATAAA
1 GAAAATAAAAAAAATAAAGAAAAATAAA
26148030 GAAAAGTAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
30 6 0.24
31 18 0.72
32 1 0.04
ACGTcount: A:0.78, C:0.02, G:0.07, T:0.14
Consensus pattern (31 bp):
GAAAATAAAAAAAATAAAGAAAAATAAAAGT
Found at i:26148459 original size:20 final size:19
Alignment explanation
Indices: 26148426--26148474 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
26148416 CGGTTGAATA
* *
26148426 TTCATCGGATTCTAAAAATT
1 TTCATCGAAATCT-AAAATT
**
26148446 TTCATCGAAATCTAAGTTT
1 TTCATCGAAATCTAAAATT
26148465 TTCATCGAAA
1 TTCATCGAAA
26148475 GTTCATCGAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
19 14 0.56
20 11 0.44
ACGTcount: A:0.35, C:0.16, G:0.10, T:0.39
Consensus pattern (19 bp):
TTCATCGAAATCTAAAATT
Found at i:26148755 original size:11 final size:11
Alignment explanation
Indices: 26148739--26148766 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
26148729 CCAGTAGCTG
26148739 TTTTTCTCTTT
1 TTTTTCTCTTT
26148750 TTTTTCTCTTT
1 TTTTTCTCTTT
26148761 TTTTTC
1 TTTTTC
26148767 ATTCCTTCTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (11 bp):
TTTTTCTCTTT
Found at i:26148927 original size:13 final size:14
Alignment explanation
Indices: 26148909--26148983 Score: 50
Period size: 13 Copynumber: 5.4 Consensus size: 14
26148899 TCTCCAGTCG
26148909 AATAAATAAAA-AA
1 AATAAATAAAATAA
*
26148922 AATAAA-AAAATCA
1 AATAAATAAAATAA
* *
26148935 AATAAATCAGAT-A
1 AATAAATAAAATAA
26148948 AATAAA-AAAATTAA
1 AATAAATAAAA-TAA
*
26148962 CAGATAAATTAAAATTA
1 -A-ATAAA-TAAAATAA
26148979 AATAA
1 AATAA
26148984 CAGATAAATT
Statistics
Matches: 48, Mismatches: 6, Indels: 14
0.71 0.09 0.21
Matches are distributed among these distances:
12 6 0.12
13 21 0.44
14 4 0.08
15 5 0.10
16 6 0.12
17 2 0.04
18 4 0.08
ACGTcount: A:0.72, C:0.04, G:0.03, T:0.21
Consensus pattern (14 bp):
AATAAATAAAATAA
Found at i:26148967 original size:20 final size:20
Alignment explanation
Indices: 26148910--26148992 Score: 79
Period size: 17 Copynumber: 4.3 Consensus size: 20
26148900 CTCCAGTCGA
*
26148910 ATAAATAAAAAAAATAA-A-
1 ATAAATAAAATAAATAACAG
*
26148928 A-AAATCAAATAAAT--CAG
1 ATAAATAAAATAAATAACAG
26148945 ATAAATAAAA-AAATTAACAG
1 ATAAATAAAATAAA-TAACAG
26148965 ATAAATTAAAATTAAATAACAG
1 ATAAA-TAAAA-TAAATAACAG
26148987 ATAAAT
1 ATAAAT
26148993 TATAACATAT
Statistics
Matches: 53, Mismatches: 3, Indels: 15
0.75 0.04 0.21
Matches are distributed among these distances:
16 1 0.02
17 15 0.28
18 9 0.17
20 8 0.15
21 6 0.11
22 11 0.21
23 3 0.06
ACGTcount: A:0.70, C:0.05, G:0.04, T:0.22
Consensus pattern (20 bp):
ATAAATAAAATAAATAACAG
Found at i:26148972 original size:12 final size:12
Alignment explanation
Indices: 26148955--26148994 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
26148945 ATAAATAAAA
26148955 AAATTAACAGAT
1 AAATTAACAGAT
26148967 AAATTAA-A-ATT
1 AAATTAACAGA-T
26148978 AAA-TAACAGAT
1 AAATTAACAGAT
26148989 AAATTA
1 AAATTA
26148995 TAACATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (12 bp):
AAATTAACAGAT
Found at i:26148987 original size:22 final size:21
Alignment explanation
Indices: 26148934--26148994 Score: 76
Period size: 22 Copynumber: 3.0 Consensus size: 21
26148924 TAAAAAAATC
26148934 AAATAAAT--CAGATAAA-TA
1 AAATAAATAACAGATAAATTA
26148952 AAA-AAATTAACAGATAAATTA
1 AAATAAA-TAACAGATAAATTA
26148973 AAATTAAATAACAGATAAATTA
1 AAA-TAAATAACAGATAAATTA
26148995 TAACATATAA
Statistics
Matches: 37, Mismatches: 0, Indels: 8
0.82 0.00 0.18
Matches are distributed among these distances:
17 3 0.08
18 4 0.11
20 8 0.22
21 5 0.14
22 14 0.38
23 3 0.08
ACGTcount: A:0.66, C:0.05, G:0.05, T:0.25
Consensus pattern (21 bp):
AAATAAATAACAGATAAATTA
Found at i:26149114 original size:12 final size:12
Alignment explanation
Indices: 26149099--26149159 Score: 54
Period size: 11 Copynumber: 5.0 Consensus size: 12
26149089 ATAAATACAT
26149099 AAAATAAAAAAA
1 AAAATAAAAAAA
*
26149111 AAAAT-ATAAAA
1 AAAATAAAAAAA
*
26149122 ACAATAACAATAATA
1 AAAATAA-AA-AA-A
*
26149137 AAAAT-AAAAAT
1 AAAATAAAAAAA
26149148 AAAATAAAAAAA
1 AAAATAAAAAAA
26149160 TGTAAATTAA
Statistics
Matches: 38, Mismatches: 6, Indels: 10
0.70 0.11 0.19
Matches are distributed among these distances:
11 14 0.37
12 13 0.34
13 3 0.08
14 3 0.08
15 5 0.13
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (12 bp):
AAAATAAAAAAA
Found at i:26149142 original size:6 final size:6
Alignment explanation
Indices: 26149099--26149157 Score: 50
Period size: 6 Copynumber: 9.7 Consensus size: 6
26149089 ATAAATACAT
* * *
26149099 AAAATA AAAAAA AAAATA TAAAA-A CAATAACA ATAATA AAAATA AAAAT-
1 AAAATA AAAATA AAAATA -AAAATA -AA-AATA AAAATA AAAATA AAAATA
26149148 AAAATA AAAA
1 AAAATA AAAA
26149158 AATGTAAATT
Statistics
Matches: 43, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
5 5 0.12
6 30 0.70
7 7 0.16
8 1 0.02
ACGTcount: A:0.81, C:0.03, G:0.00, T:0.15
Consensus pattern (6 bp):
AAAATA
Found at i:26149912 original size:115 final size:115
Alignment explanation
Indices: 26149741--26150396 Score: 826
Period size: 115 Copynumber: 5.7 Consensus size: 115
26149731 GATACTTTCA
* * * * * ** * *
26149741 ACTTTCAACTTTTCC-CTAAAA--TATCTTTTGAAACTTTAATTTCGAGGAAAGTTGATACTTTT
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTC
** * *
26149803 AACTTTTCCTCAAAAATCGTTTTAAAAATTTATTTTTAAGGAAAATTAAT
66 AACTTTTCCTCAAAAATTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
*
26149853 ACTTTCAACTTTTTCTCAAAAACTTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTC
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTC
* *
26149918 AACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTCAAGGAAAATTTAT
66 AACTTTTCCTCAAAAA-TTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
26149969 ACTTTCAACTTTTCCTCAAAAAC--TTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTC
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTC
* * * *
26150032 AACTTTTTCTCAAAAATATTTTTTGGAAACTTTAATTTTGAGGAAAATTGAT
66 AACTTTTCCTCAAAAAT-TTTTTT-GAAAATTTATTTTTAAGGAAAATTGAT
* * *
26150084 ACTTTCAACTTTTCCTTAAAAAC--ATTTTTTGAAAATTTATTTTTAAAGAAAATTGATACTTTC
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTC
* *
26150147 AACTTTTTCTCAAAAACCTTTTTTGAAAATTTATTTTT-AGGAAAAATTGAT
66 AACTTTTCCTCAAAAA-TTTTTTTGAAAATTTATTTTTAAGG-AAAATTGAT
* * * * ** *
26150198 ACTTTCAACTTTTCCTTAAAAA-TTATTTTTTGGAAAACCTTAATTTCGAGAAAAATTGATACTT
1 ACTTTCAACTTTTCCTCAAAAACTT-TTTTTTTGAAAA-TTTATTTTTAAGGAAAATTGATACTT
* *
26150262 TTAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGAAAAATTGAT
64 TCAACTTTTCCTCAAAAA-TTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
* * * * *
26150315 ACTTTCAATTTTTCCCCAAAAACTTTGTTTTTGAAATTTTATTTTTAAGAAAAATTGATACTTTC
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTC
26150380 AACTTTTCCTCAAAAAT
66 AACTTTTCCTCAAAAAT
26150397 ATATTTTTTT
Statistics
Matches: 479, Mismatches: 51, Indels: 25
0.86 0.09 0.05
Matches are distributed among these distances:
112 14 0.03
113 9 0.02
114 104 0.22
115 154 0.32
116 100 0.21
117 94 0.20
118 4 0.01
ACGTcount: A:0.36, C:0.12, G:0.07, T:0.45
Consensus pattern (115 bp):
ACTTTCAACTTTTCCTCAAAAACTTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTC
AACTTTTCCTCAAAAATTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
Found at i:26149971 original size:57 final size:57
Alignment explanation
Indices: 26149741--26150395 Score: 843
Period size: 57 Copynumber: 11.4 Consensus size: 57
26149731 GATACTTTCA
* * * * ** *
26149741 ACTTTCAACTTTTCC-CTAAAA-TATCTTTTGAAACTTTAATTTCGAGGAAAGTTGAT
1 ACTTTCAACTTTTCCTCAAAAACT-TTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
* ** * *
26149797 ACTTTTAACTTTTCCTCAAAAA-TCGTTTTAAAAATTTATTTTTAAGGAAAATTAAT
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
*
26149853 ACTTTCAACTTTTTCTCAAAAACTTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
1 ACTTTCAACTTTTCCTCAAAAAC--TTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
* *
26149912 ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTCAAGGAAAATTTAT
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
26149969 ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
* * * *
26150026 ACTTTCAACTTTTTCTCAAAAA-TATTTTTTGGAAACTTTAATTTTGAGGAAAATTGAT
1 ACTTTCAACTTTTCCTCAAAAACT-TTTTTT-GAAAATTTATTTTTAAGGAAAATTGAT
* * *
26150084 ACTTTCAACTTTTCCTTAAAAACATTTTTTGAAAATTTATTTTTAAAGAAAATTGAT
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
* *
26150141 ACTTTCAACTTTTTCTCAAAAACCTTTTTTGAAAATTTATTTTT-AGGAAAAATTGAT
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGG-AAAATTGAT
* * * * ** *
26150198 ACTTTCAACTTTTCCTTAAAAATTATTTTTTGGAAAACCTTAATTTCGAGAAAAATTGAT
1 ACTTTCAACTTTTCCTCAAAAACT-TTTTTT-GAAAA-TTTATTTTTAAGGAAAATTGAT
* *
26150258 ACTTTTAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGAAAAATTGAT
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
* * * *
26150315 ACTTTCAATTTTTCCCCAAAAACTTTGTTTTTGAAATTTTATTTTTAAGAAAAATTGAT
1 ACTTTCAACTTTTCCTCAAAAAC-TT-TTTTTGAAAATTTATTTTTAAGGAAAATTGAT
26150374 ACTTTCAACTTTTCCTCAAAAA
1 ACTTTCAACTTTTCCTCAAAAA
26150396 TATATTTTTT
Statistics
Matches: 527, Mismatches: 58, Indels: 25
0.86 0.10 0.04
Matches are distributed among these distances:
56 61 0.12
57 251 0.48
58 63 0.12
59 114 0.22
60 36 0.07
61 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.07, T:0.45
Consensus pattern (57 bp):
ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
Found at i:26150087 original size:172 final size:173
Alignment explanation
Indices: 26149741--26150405 Score: 899
Period size: 172 Copynumber: 3.8 Consensus size: 173
26149731 GATACTTTCA
* * * * * * *
26149741 ACTTTCAACTTTTCC-CTAAAA-TATCTTTTGAAACTTTAATTTCGAGGAAAGTTGATACTTTTA
1 ACTTTCAACTTTTCCTCAAAAACT-TTTTTTGAAAATTTATTTTCAAGGAAAATTGATACTTTCA
** * * *
26149804 ACTTTTCCTCAAAAA-TCGTTTTAAAAATTTATTTTTAAGGAAAATTAATACTTTCAACTTTTTC
65 ACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCC
* * * * *
26149868 TCAAAAACTTTTTTTTTGAAAATTTATTTTTAAGGAAAATTGAT
130 TCAAAAACTATTTTTTGGAAACTTTAATTTTGAGGAAAATTGAT
*
26149912 ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTCAAGGAAAATTTATACTTTCAA
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTCAAGGAAAATTGATACTTTCAA
*
26149977 CTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTTCT
66 CTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCT
26150042 CAAAAA-TATTTTTTGGAAACTTTAATTTTGAGGAAAATTGAT
131 CAAAAACTATTTTTTGGAAACTTTAATTTTGAGGAAAATTGAT
* * * *
26150084 ACTTTCAACTTTTCCTTAAAAACATTTTTTGAAAATTTATTTTTAAAGAAAATTGATACTTTCAA
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTCAAGGAAAATTGATACTTTCAA
* *
26150149 CTTTTTCTCAAAAACCTTTTTTGAAAATTTATTTTT-AGGAAAAATTGATACTTTCAACTTTTCC
66 CTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGG-AAAATTGATACTTTCAACTTTTCC
* * * * *
26150213 TTAAAAATTATTTTTTGGAAAACCTTAATTTCGAGAAAAATTGAT
130 TCAAAAACTATTTTTTGG-AAACTTTAATTTTGAGGAAAATTGAT
* * *
26150258 ACTTTTAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGAAAAATTGATACTTTCAA
1 ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTCAAGGAAAATTGATACTTTCAA
* * * *
26150323 TTTTTCCCCAAAAACTTTGTTTTTGAAATTTTATTTTTAAGAAAAATTGATACTTTCAACTTTTC
66 CTTTTCCTCAAAAAC-TT-TTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTC
*
26150388 CTCAAAAATATATTTTTT
129 CTCAAAAA-CTATTTTTT
26150406 TGGATTTTAT
Statistics
Matches: 442, Mismatches: 42, Indels: 14
0.89 0.08 0.03
Matches are distributed among these distances:
171 18 0.04
172 207 0.47
173 63 0.14
174 95 0.21
175 1 0.00
176 48 0.11
177 10 0.02
ACGTcount: A:0.35, C:0.12, G:0.07, T:0.46
Consensus pattern (173 bp):
ACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTCAAGGAAAATTGATACTTTCAA
CTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAAATTGATACTTTCAACTTTTCCT
CAAAAACTATTTTTTGGAAACTTTAATTTTGAGGAAAATTGAT
Found at i:26150430 original size:5 final size:5
Alignment explanation
Indices: 26150422--26150515 Score: 81
Period size: 5 Copynumber: 18.8 Consensus size: 5
26150412 TTATTTAAAG
* *
26150422 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAAT AAAA- ATAA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAAAT AAAAT
*
26150470 AAAAT AAAA- AAAAT AAAACA AAAAT AAAAAT AAAAT AAAGAT AAAA
1 AAAAT AAAAT AAAAT AAAA-T AAAAT -AAAAT AAAAT AAA-AT AAAA
26150516 GAATGTTAAA
Statistics
Matches: 74, Mismatches: 6, Indels: 18
0.76 0.06 0.18
Matches are distributed among these distances:
3 3 0.04
4 10 0.14
5 41 0.55
6 16 0.22
7 4 0.05
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (5 bp):
AAAAT
Found at i:26150455 original size:17 final size:16
Alignment explanation
Indices: 26150422--26150515 Score: 91
Period size: 17 Copynumber: 5.6 Consensus size: 16
26150412 TTATTTAAAG
26150422 AAAATAAAATAATAAAAC
1 AAAAT-AAA-AATAAAAC
* *
26150440 AAAATAAAAGTGAAAAT
1 AAAATAAAAAT-AAAAC
26150457 AAAATAAAAATAAAA-
1 AAAATAAAAATAAAAC
*
26150472 AATAAAAAAAATAAAAC
1 AA-AATAAAAATAAAAC
*
26150489 AAAAATAAAAATAAAAT
1 -AAAATAAAAATAAAAC
26150506 AAAGATAAAA
1 AAA-ATAAAA
26150516 GAATGTTAAA
Statistics
Matches: 65, Mismatches: 6, Indels: 11
0.79 0.07 0.13
Matches are distributed among these distances:
15 2 0.03
16 21 0.32
17 35 0.54
18 7 0.11
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (16 bp):
AAAATAAAAATAAAAC
Found at i:26150455 original size:30 final size:30
Alignment explanation
Indices: 26150421--26150504 Score: 106
Period size: 30 Copynumber: 2.9 Consensus size: 30
26150411 TTTATTTAAA
*
26150421 GAAAATAAAATAATAAA-ACAAAATAAAAGT
1 GAAAATAAAATAA-AAATAAAAAATAAAAGT
26150451 GAAAATAAAATAAAAATAAAAAATAAAA--
1 GAAAATAAAATAAAAATAAAAAATAAAAGT
*
26150479 -AAAATAAAACAAAAAT-AAAAATAAAA
1 GAAAATAAAATAAAAATAAAAAATAAAA
26150505 TAAAGATAAA
Statistics
Matches: 51, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
26 10 0.20
27 15 0.29
29 3 0.06
30 23 0.45
ACGTcount: A:0.80, C:0.02, G:0.04, T:0.14
Consensus pattern (30 bp):
GAAAATAAAATAAAAATAAAAAATAAAAGT
Found at i:26150457 original size:12 final size:11
Alignment explanation
Indices: 26150422--26150515 Score: 86
Period size: 11 Copynumber: 8.4 Consensus size: 11
26150412 TTATTTAAAG
26150422 AAAATAAAATAAT
1 AAAAT-AAA-AAT
*
26150435 AAAA-CAAAAT
1 AAAATAAAAAT
*
26150445 AAAAGTGAAAAT
1 AAAA-TAAAAAT
26150457 AAAATAAAAAT
1 AAAATAAAAAT
*
26150468 AAAA-AATAAAA
1 AAAATAA-AAAT
26150479 AAAATAAAACA-
1 AAAATAAAA-AT
26150490 AAAATAAAAAT
1 AAAATAAAAAT
*
26150501 AAAATAAAGAT
1 AAAATAAAAAT
26150512 AAAA
1 AAAA
26150516 GAATGTTAAA
Statistics
Matches: 70, Mismatches: 5, Indels: 14
0.79 0.06 0.16
Matches are distributed among these distances:
10 10 0.14
11 44 0.63
12 12 0.17
13 4 0.06
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (11 bp):
AAAATAAAAAT
Found at i:26150489 original size:49 final size:49
Alignment explanation
Indices: 26150422--26150515 Score: 138
Period size: 49 Copynumber: 1.9 Consensus size: 49
26150412 TTATTTAAAG
* *
26150422 AAAATAAAATAATAAAAC-AAAATAAAAGTGAAAATAAA-ATAAAAATAA
1 AAAATAAAAAAATAAAACAAAAATAAAAAT-AAAATAAAGATAAAAATAA
26150470 AAAATAAAAAAAATAAAACAAAAATAAAAATAAAATAAAGATAAAA
1 AAAAT-AAAAAAATAAAACAAAAATAAAAATAAAATAAAGATAAAA
26150516 GAATGTTAAA
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
48 5 0.12
49 20 0.49
50 16 0.39
ACGTcount: A:0.80, C:0.02, G:0.03, T:0.15
Consensus pattern (49 bp):
AAAATAAAAAAATAAAACAAAAATAAAAATAAAATAAAGATAAAAATAA
Found at i:26150609 original size:17 final size:17
Alignment explanation
Indices: 26150587--26150619 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26150577 ACTTGAAACG
26150587 GCTCGACTAACGGCTCA
1 GCTCGACTAACGGCTCA
*
26150604 GCTCGATTAACGGCTC
1 GCTCGACTAACGGCTC
26150620 GACTTAAGGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.21, C:0.33, G:0.24, T:0.21
Consensus pattern (17 bp):
GCTCGACTAACGGCTCA
Found at i:26151471 original size:12 final size:12
Alignment explanation
Indices: 26151454--26151493 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
26151444 ATAAATCAAA
26151454 AAATTAACAGAT
1 AAATTAACAGAT
26151466 AAATTAA-A-ATT
1 AAATTAACAGA-T
26151477 AAA-TAACAGAT
1 AAATTAACAGAT
26151488 AAATTA
1 AAATTA
26151494 TAACATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (12 bp):
AAATTAACAGAT
Found at i:26151486 original size:22 final size:22
Alignment explanation
Indices: 26151427--26151493 Score: 84
Period size: 22 Copynumber: 3.0 Consensus size: 22
26151417 AAAAAATAAA
*
26151427 AAAATTAAATAAATCAGATAAATC
1 AAAATTAAAT-AA-CAGATAAATT
*
26151451 AAAA--AATTAACAGATAAATT
1 AAAATTAAATAACAGATAAATT
26151471 AAAATTAAATAACAGATAAATT
1 AAAATTAAATAACAGATAAATT
26151493 A
1 A
26151494 TAACATATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 6
0.81 0.06 0.13
Matches are distributed among these distances:
20 13 0.34
21 2 0.05
22 19 0.50
24 4 0.11
ACGTcount: A:0.64, C:0.06, G:0.04, T:0.25
Consensus pattern (22 bp):
AAAATTAAATAACAGATAAATT
Found at i:26151659 original size:14 final size:13
Alignment explanation
Indices: 26151630--26151680 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
26151620 TATAAACAAT
*
26151630 AATAATAAAAATAA
1 AATAA-AAAAAAAA
26151644 AATAAAAAATAAAA
1 AATAAAAAA-AAAA
26151658 AATAAAAAAAAAA
1 AATAAAAAAAAAA
* *
26151671 GAGAAAAAAA
1 AATAAAAAAA
26151681 TGAAAATGGG
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
13 16 0.48
14 17 0.52
ACGTcount: A:0.84, C:0.00, G:0.04, T:0.12
Consensus pattern (13 bp):
AATAAAAAAAAAA
Found at i:26151677 original size:19 final size:19
Alignment explanation
Indices: 26151636--26151678 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
26151626 CAATAATAAT
*
26151636 AAAAATAAAATAAAAAATA
1 AAAAATAAAATAAAAAAGA
26151655 AAAAATAAAA-AAAAAAGA
1 AAAAATAAAATAAAAAAGA
26151673 GAAAAA
1 -AAAAA
26151679 AATGAAAATG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 7 0.32
19 15 0.68
ACGTcount: A:0.86, C:0.00, G:0.05, T:0.09
Consensus pattern (19 bp):
AAAAATAAAATAAAAAAGA
Found at i:26151686 original size:7 final size:7
Alignment explanation
Indices: 26151642--26151670 Score: 51
Period size: 7 Copynumber: 4.3 Consensus size: 7
26151632 TAATAAAAAT
26151642 AAAATAA
1 AAAATAA
26151649 AAAATAA
1 AAAATAA
26151656 AAAATAA
1 AAAATAA
26151663 AAAA-AA
1 AAAATAA
26151669 AA
1 AA
26151671 GAGAAAAAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
6 4 0.18
7 18 0.82
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (7 bp):
AAAATAA
Found at i:26151956 original size:41 final size:41
Alignment explanation
Indices: 26151858--26152068 Score: 242
Period size: 42 Copynumber: 5.1 Consensus size: 41
26151848 TTTGATCAAA
* * * * *
26151858 GCTCCTCTAAGCAGAGGCTCAACGACTTTGAAAAAATAAATG
1 GCTCCTCTAAACAGAGGCTCCACGACTTTG-GAAAGTAAATT
* **
26151900 GCTCCTCTAATCAGAGGCTTGACGACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCTCCACGACTTTGGAAAGTAAATT
* * * *
26151941 GCTCATCTAAACAGAGGTTCGACAACTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCTCCACGACTTTGGAAAGTAAATT
* *
26151982 GCTCCTCTAAATAGAGGCACCACGACTTTTGGAAAGTAAATT
1 GCTCCTCTAAACAGAGGCTCCACGAC-TTTGGAAAGTAAATT
* * *
26152024 ACTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCTCCACGAC-TTTGGAAAGTAAATT
26152066 GCT
1 GCT
26152069 TCTTGACAAT
Statistics
Matches: 147, Mismatches: 21, Indels: 2
0.86 0.12 0.01
Matches are distributed among these distances:
41 64 0.44
42 83 0.56
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (41 bp):
GCTCCTCTAAACAGAGGCTCCACGACTTTGGAAAGTAAATT
Found at i:26152020 original size:83 final size:82
Alignment explanation
Indices: 26151858--26152068 Score: 253
Period size: 83 Copynumber: 2.5 Consensus size: 82
26151848 TTTGATCAAA
* * * ***
26151858 GCTCCTCTAAGCAGAGGCTCAACGACTTTGAAAAAATAAATGGCTCCTCTAATCAGAGGCTTGAC
1 GCTCCTCTAAACAGAGGCTCAACGACTTTG-AAAAGTAAATTGCTCCTCTAATCAGAGGCACCAC
26151923 GACTTTGGAAAGTAAATT
65 GACTTTGGAAAGTAAATT
* * * * *
26151941 GCTCATCTAAACAGAGGTTCGACAACTTTGGAAAGTAAATTGCTCCTCTAAAT-AGAGGCACCAC
1 GCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAGTAAATTGCTCCTCT-AATCAGAGGCACCAC
26152005 GACTTTTGGAAAGTAAATT
65 GAC-TTTGGAAAGTAAATT
* * *
26152024 ACTCCTCTAAACAGAGGCACCACGACTTTTGAAAAGTAAATTGCT
1 GCTCCTCTAAACAGAGGCTCAACGAC-TTTGAAAAGTAAATTGCT
26152069 TCTTGACAAT
Statistics
Matches: 107, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
82 27 0.25
83 63 0.59
84 17 0.16
ACGTcount: A:0.35, C:0.21, G:0.19, T:0.26
Consensus pattern (82 bp):
GCTCCTCTAAACAGAGGCTCAACGACTTTGAAAAGTAAATTGCTCCTCTAATCAGAGGCACCACG
ACTTTGGAAAGTAAATT
Found at i:26163788 original size:116 final size:114
Alignment explanation
Indices: 26163481--26163925 Score: 551
Period size: 116 Copynumber: 3.9 Consensus size: 114
26163471 TGTTTTTGTG
* * * * * **
26163481 TAAAAAAAATTGATACATTCAACTTTTCACT-AAAATA-TTTTTTAGAAATTTTAATCTCGAGG-
1 TAAAAAAAATTGATACTTTCAACTTTTC-CTCAAAA-ACTTTTTTTGAAAATTTATTTTTAAGGA
* * * *
26163543 AAATTGATATTTTCAACTTTTTCC-C-AAAATATCTTTTGAAACTTTAATTT
64 AAATTGATACTTTCAAC-TTTTCCTCAAAAATTTTTTTTGAAAATTTAATTT
** * ** * *
26163593 CGAAAAAAATTGATACTTTCAACTTTTTCTCAAAAAC-CGTTTTAAAAATTTATTTTTAAGAAAA
1 TAAAAAAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAA
*
26163657 ATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAAATTTATTTT
66 ATTGATACTTTCAACTTTTCCTCAAAAA--TTTTTTTTGAAAATTTAATTT
*
26163708 TAAAAAAAATTGATATTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAA
1 TAAAAAAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAA
*
26163773 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTGGAAAACTTTAATTT
66 ATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTTGAAAA-TTTAATTT
* ** *
26163824 TGAGGAAAATTGACACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAA
1 TAAAAAAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAA
26163889 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
66 ATTGATACTTTCAACTTTTCCTCAAAAAT-TTTTTTT
26163926 TTGGATTTTA
Statistics
Matches: 288, Mismatches: 35, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
111 23 0.08
112 45 0.16
113 4 0.01
114 1 0.00
115 61 0.21
116 154 0.53
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (114 bp):
TAAAAAAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGGAAA
ATTGATACTTTCAACTTTTCCTCAAAAATTTTTTTTGAAAATTTAATTT
Found at i:26163947 original size:57 final size:57
Alignment explanation
Indices: 26163486--26163925 Score: 493
Period size: 57 Copynumber: 7.7 Consensus size: 57
26163476 TTGTGTAAAA
* * * * * **
26163486 AAAATTGATACATTCAACTTTTCACT-AAAATA-TTTTTTAGAAATTTTAATCTCGAGG
1 AAAATTGATACTTTCAACTTTTC-CTCAAAA-ACTTTTTTTGAAAATTTATTTTTAAGG
* * * ** *
26163543 -AAATTGATATTTTCAACTTTTTCC-C-AAAA-TATCTTTTGAAACTTTAATTTCGAA-A
1 AAAATTGATACTTTCAAC-TTTTCCTCAAAAACT-TTTTTTGAAAATTT-ATTTTTAAGG
* ** * *
26163598 AAAATTGATACTTTCAACTTTTTCTCAAAAAC-CGTTTTAAAAATTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGG
**
26163654 AAAATTGATACTTTCAACTTTTCCTCAAAAACCTTTTTTTTGAAAATTTATTTTTAAAA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-C-TTTTTTTGAAAATTTATTTTTAAGG
*
26163713 AAAATTGATATTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGG
* *
26163770 AAAATTGATACTTTCAACTTTTCCTCAAAAA-TATTTTTTGGAAAACTTTAATTTTGAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAACT-TTTTTT-GAAAA-TTTATTTTTAAGG
*
26163829 AAAATTGACACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGG
*
26163886 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAA-CTTTTTTT
26163926 TTGGATTTTA
Statistics
Matches: 331, Mismatches: 35, Indels: 33
0.83 0.09 0.08
Matches are distributed among these distances:
54 2 0.01
55 25 0.08
56 78 0.24
57 110 0.33
58 18 0.05
59 97 0.29
60 1 0.00
ACGTcount: A:0.37, C:0.13, G:0.06, T:0.44
Consensus pattern (57 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAACTTTTTTTGAAAATTTATTTTTAAGG
Found at i:26164021 original size:6 final size:5
Alignment explanation
Indices: 26163943--26164076 Score: 61
Period size: 5 Copynumber: 26.8 Consensus size: 5
26163933 TTATTTAAAG
*
26163943 AAAAT AAAAT --AAT AAAAC AAAAT AAAAGT GAAAAT AAAA- AAAGA-
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAAA-T -AAAAT AAAAT AAA-AT
* * *
26163987 AAAGT AAAACA AAAAT AAAAAT AAAAT AAAGAT AAAA- AAATAT TAAAT
1 AAAAT AAAA-T AAAAT -AAAAT AAAAT AAA-AT AAAAT AAA-AT AAAAT
* **
26164035 AAACCT AATCT AATAAT AAAAT -AAAT -AAAT -AAAT -AAAT AAAA
1 AAA-AT AAAAT AA-AAT AAAAT AAAAT AAAAT AAAAT AAAAT AAAA
26164077 AAACCTGAAA
Statistics
Matches: 103, Mismatches: 12, Indels: 28
0.72 0.08 0.20
Matches are distributed among these distances:
3 3 0.03
4 22 0.21
5 50 0.49
6 24 0.23
7 4 0.04
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:26164021 original size:11 final size:11
Alignment explanation
Indices: 26163943--26164037 Score: 59
Period size: 11 Copynumber: 8.2 Consensus size: 11
26163933 TTATTTAAAG
26163943 AAAATAAAATAA
1 AAAATAAAAT-A
*
26163955 TAAAACAAAATA
1 -AAAATAAAATA
*
26163967 AAAGTGAAAATAAA
1 AAAAT-AAAAT--A
*
26163981 AAAAGAAAAGTA
1 AAAATAAAA-TA
26163993 AAACA-AAAATA
1 AAA-ATAAAATA
26164004 AAAATAAAATA
1 AAAATAAAATA
*
26164015 AAGATAAAA-A
1 AAAATAAAATA
* *
26164025 AATATTAAATA
1 AAAATAAAATA
26164036 AA
1 AA
26164038 CCTAATCTAA
Statistics
Matches: 67, Mismatches: 8, Indels: 16
0.74 0.09 0.18
Matches are distributed among these distances:
10 9 0.13
11 25 0.37
12 14 0.21
13 14 0.21
14 5 0.07
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (11 bp):
AAAATAAAATA
Found at i:26164021 original size:17 final size:16
Alignment explanation
Indices: 26163943--26164037 Score: 61
Period size: 17 Copynumber: 5.8 Consensus size: 16
26163933 TTATTTAAAG
*
26163943 AAAATAAAATAATAAAAC
1 AAAATAAAAT-A-AAAAT
*
26163961 AAAATAAAAGTGAAAAT
1 AAAATAAAA-TAAAAAT
* *
26163978 -AAA-AAAAGAAAAGT
1 AAAATAAAATAAAAAT
*
26163992 AAAACAAAAATAAAAAT
1 AAAA-TAAAATAAAAAT
26164009 AAAATAAAGATAAAAA-
1 AAAATAAA-ATAAAAAT
* *
26164025 AATATTAAATAAA
1 AAAATAAAATAAA
26164038 CCTAATCTAA
Statistics
Matches: 62, Mismatches: 10, Indels: 13
0.73 0.12 0.15
Matches are distributed among these distances:
14 4 0.06
15 12 0.19
16 12 0.19
17 24 0.39
18 9 0.15
19 1 0.02
ACGTcount: A:0.77, C:0.02, G:0.05, T:0.16
Consensus pattern (16 bp):
AAAATAAAATAAAAAT
Found at i:26164595 original size:24 final size:23
Alignment explanation
Indices: 26164547--26164596 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 23
26164537 TGGAATTTGG
*
26164547 AAAATTTCCAAAAATTTCCAGAAA
1 AAAATTTCCAAAAATCTCCA-AAA
26164571 AAAATTTCGCAAAAAATCTCCAAAA
1 AAAATTTC-C-AAAAATCTCCAAAA
26164596 A
1 A
26164597 TTTTTTCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 8 0.35
25 5 0.22
26 10 0.43
ACGTcount: A:0.56, C:0.18, G:0.04, T:0.22
Consensus pattern (23 bp):
AAAATTTCCAAAAATCTCCAAAA
Found at i:26164870 original size:4 final size:4
Alignment explanation
Indices: 26164861--26164895 Score: 54
Period size: 4 Copynumber: 8.8 Consensus size: 4
26164851 TCTTCAGTCG
26164861 AATA AATA AA-A AATA AATA AATA AATTA AATA AAT
1 AATA AATA AATA AATA AATA AATA AA-TA AATA AAT
26164896 CAGATAAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
3 3 0.10
4 22 0.76
5 4 0.14
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
AATA
Found at i:26164892 original size:9 final size:9
Alignment explanation
Indices: 26164863--26164915 Score: 51
Period size: 9 Copynumber: 6.3 Consensus size: 9
26164853 TTCAGTCGAA
26164863 TAAATAAA-
1 TAAATAAAT
26164871 -AAATAAA-
1 TAAATAAAT
26164878 TAAATAAAT
1 TAAATAAAT
26164887 TAAATAAAT
1 TAAATAAAT
* *
26164896 CAGATAAAT
1 TAAATAAAT
*
26164905 CAAA-AAAT
1 TAAATAAAT
26164913 TAA
1 TAA
26164916 CAGATAAATT
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
7 7 0.18
8 13 0.33
9 19 0.49
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.25
Consensus pattern (9 bp):
TAAATAAAT
Found at i:26164904 original size:13 final size:12
Alignment explanation
Indices: 26164861--26164895 Score: 54
Period size: 11 Copynumber: 2.9 Consensus size: 12
26164851 TCTTCAGTCG
26164861 AATAAATAAA-A
1 AATAAATAAATA
26164872 AATAAATAAATA
1 AATAAATAAATA
26164884 AATTAAATAAAT
1 AA-TAAATAAAT
26164896 CAGATAAATC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 10 0.45
12 3 0.14
13 9 0.41
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (12 bp):
AATAAATAAATA
Found at i:26164923 original size:38 final size:40
Alignment explanation
Indices: 26164862--26164946 Score: 104
Period size: 38 Copynumber: 2.1 Consensus size: 40
26164852 CTTCAGTCGA
*
26164862 ATAAATAAAAAATAAATAAATAAATT-AAA-TAAAT-CAG
1 ATAAATAAAAAATAAACAAATAAATTAAAATTAAATACAG
* *
26164899 ATAAATCAAAAAATTAACAGATAAATTAAAATTAAATAACAG
1 ATAAAT-AAAAAATAAACAAATAAATTAAAATTAAAT-ACAG
26164941 ATAAAT
1 ATAAAT
26164947 TATAACATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 5
0.83 0.06 0.10
Matches are distributed among these distances:
37 6 0.15
38 17 0.43
39 3 0.08
40 5 0.12
42 9 0.22
ACGTcount: A:0.67, C:0.05, G:0.04, T:0.25
Consensus pattern (40 bp):
ATAAATAAAAAATAAACAAATAAATTAAAATTAAATACAG
Found at i:26164926 original size:12 final size:12
Alignment explanation
Indices: 26164909--26164948 Score: 50
Period size: 11 Copynumber: 3.5 Consensus size: 12
26164899 ATAAATCAAA
26164909 AAATTAACAGAT
1 AAATTAACAGAT
26164921 AAATTAA-A-ATT
1 AAATTAACAGA-T
26164932 AAA-TAACAGAT
1 AAATTAACAGAT
26164943 AAATTA
1 AAATTA
26164949 TAACATATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 8
0.75 0.00 0.25
Matches are distributed among these distances:
10 4 0.17
11 10 0.42
12 10 0.42
ACGTcount: A:0.62, C:0.05, G:0.05, T:0.28
Consensus pattern (12 bp):
AAATTAACAGAT
Found at i:26164941 original size:22 final size:22
Alignment explanation
Indices: 26164883--26164948 Score: 82
Period size: 22 Copynumber: 3.0 Consensus size: 22
26164873 ATAAATAAAT
*
26164883 AAATTAAATAAATCAGATAAATCA
1 AAATTAAAT-AA-CAGATAAATTA
*
26164907 AAA--AATTAACAGATAAATTA
1 AAATTAAATAACAGATAAATTA
26164927 AAATTAAATAACAGATAAATTA
1 AAATTAAATAACAGATAAATTA
26164949 TAACATATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
20 13 0.35
21 2 0.05
22 19 0.51
24 3 0.08
ACGTcount: A:0.64, C:0.06, G:0.05, T:0.26
Consensus pattern (22 bp):
AAATTAAATAACAGATAAATTA
Found at i:26165075 original size:9 final size:8
Alignment explanation
Indices: 26165029--26165125 Score: 51
Period size: 8 Copynumber: 12.2 Consensus size: 8
26165019 AGTAGTAATG
*
26165029 AATAAATA
1 AATAAAAA
*
26165037 AATACATAA
1 AATA-AAAA
26165046 AATAAAAGA
1 AATAAAA-A
*
26165055 AA-AAATA
1 AATAAAAA
*
26165062 TATAAAAA
1 AATAAAAA
26165070 CAATAATAAA
1 -AATAA-AAA
26165080 AAT--AAA
1 AATAAAAA
26165086 AATAAAAA
1 AATAAAAA
**
26165094 AAT-GTAA
1 AATAAAAA
26165101 AATAAAAA
1 AATAAAAA
*
26165109 AA-AAGAA
1 AATAAAAA
*
26165116 AAGAAAAA
1 AATAAAAA
26165124 AA
1 AA
26165126 ATGAAATGGG
Statistics
Matches: 67, Mismatches: 13, Indels: 18
0.68 0.13 0.18
Matches are distributed among these distances:
6 6 0.09
7 13 0.19
8 29 0.43
9 16 0.24
10 3 0.04
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.15
Consensus pattern (8 bp):
AATAAAAA
Found at i:26165095 original size:15 final size:15
Alignment explanation
Indices: 26165071--26165127 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
26165061 ATATAAAAAC
*
26165071 AATAATAAAAATAAA
1 AATAAAAAAAATAAA
*
26165086 AAT-AAAAAAATGTAA
1 AATAAAAAAAAT-AAA
26165101 AATAAAAAAAA-AGAA
1 AATAAAAAAAATA-AA
*
26165116 AAGAAAAAAAAT
1 AATAAAAAAAAT
26165128 GAAATGGGCT
Statistics
Matches: 34, Mismatches: 4, Indels: 7
0.76 0.09 0.16
Matches are distributed among these distances:
14 7 0.21
15 20 0.59
16 7 0.21
ACGTcount: A:0.81, C:0.00, G:0.05, T:0.14
Consensus pattern (15 bp):
AATAAAAAAAATAAA
Found at i:26165131 original size:15 final size:14
Alignment explanation
Indices: 26165077--26165131 Score: 58
Period size: 15 Copynumber: 3.7 Consensus size: 14
26165067 AAACAATAAT
26165077 AAAAAT-AAAAATAA
1 AAAAATGAAAAA-AA
26165091 AAAAATGTAAAATAAA
1 AAAAATG-AAAA-AAA
*
26165107 AAAAAAGAAAAGAAA
1 AAAAATGAAAA-AAA
26165122 AAAAATGAAA
1 AAAAATGAAA
26165132 TGGGCTTATC
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
14 6 0.17
15 16 0.46
16 12 0.34
17 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.11
Consensus pattern (14 bp):
AAAAATGAAAAAAA
Found at i:26174202 original size:21 final size:22
Alignment explanation
Indices: 26174161--26174202 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 22
26174151 TTTGAAGATG
*
26174161 GCAAAACATTTTGTTTTGATTT
1 GCAAAACATTTTGTTTGGATTT
26174183 GCAAAA-ATTTT-TTCTGGATT
1 GCAAAACATTTTGTT-TGGATT
26174203 AAATTTGTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 3
0.82 0.05 0.14
Matches are distributed among these distances:
20 2 0.11
21 10 0.56
22 6 0.33
ACGTcount: A:0.29, C:0.10, G:0.14, T:0.48
Consensus pattern (22 bp):
GCAAAACATTTTGTTTGGATTT
Found at i:26178067 original size:20 final size:21
Alignment explanation
Indices: 26178035--26178090 Score: 87
Period size: 20 Copynumber: 2.7 Consensus size: 21
26178025 TTAATTCTAT
*
26178035 TTTAAGATTTATTTATATTTG
1 TTTAAGATTTATTTATATTCG
*
26178056 TTTGAG-TTTATTTATATTCG
1 TTTAAGATTTATTTATATTCG
26178076 TTTAAGATTTATTTA
1 TTTAAGATTTATTTA
26178091 ATGTTGATAA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
20 18 0.58
21 13 0.42
ACGTcount: A:0.27, C:0.02, G:0.11, T:0.61
Consensus pattern (21 bp):
TTTAAGATTTATTTATATTCG
Found at i:26186261 original size:26 final size:27
Alignment explanation
Indices: 26186222--26186279 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
26186212 GTTAAAACTT
*
26186222 GATATCCCCGTCAAGCTCAACAC-AAA
1 GATATCCCCATCAAGCTCAACACAAAA
26186248 GATATCCCCATCAAGCTCAACACAAAA
1 GATATCCCCATCAAGCTCAACACAAAA
26186275 GATAT
1 GATAT
26186280 AGATCCATTG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 22 0.73
27 8 0.27
ACGTcount: A:0.41, C:0.31, G:0.10, T:0.17
Consensus pattern (27 bp):
GATATCCCCATCAAGCTCAACACAAAA
Found at i:26186832 original size:2 final size:2
Alignment explanation
Indices: 26186821--26186855 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
26186811 ATTTCAAACC
26186821 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
26186856 AGATTTTAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:26193697 original size:262 final size:262
Alignment explanation
Indices: 26193232--26193754 Score: 1019
Period size: 262 Copynumber: 2.0 Consensus size: 262
26193222 TCTGATACCA
*
26193232 CTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCGGGACCCGGGCATTCACCCTTC
1 CTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCAGGACCCGGGCATTCACCCTTC
26193297 CGGCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
66 CGGCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
26193362 CCTAGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTA
131 CCTAGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTA
26193427 TACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTGGGTCCGTGACAT
196 TACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTGGGTCCGTGACAT
26193492 TT
261 TT
*
26193494 CTTGTCACGGGTCGAGACTCAAGCTTCGAACCCGCGCGGCTCCAGGACCCGGGCATTCACCCTTC
1 CTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCAGGACCCGGGCATTCACCCTTC
26193559 CGGCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
66 CGGCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
*
26193624 CCTGGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTA
131 CCTAGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTA
26193689 TACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTGGGTCCGTGACAT
196 TACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTGGGTCCGTGACAT
26193754 T
261 T
26193755 CTCCCGCACC
Statistics
Matches: 258, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
262 258 1.00
ACGTcount: A:0.17, C:0.34, G:0.25, T:0.24
Consensus pattern (262 bp):
CTTGTCACGGGTCGAGACTCAAGCTCCGAACCCGCGCGGCTCCAGGACCCGGGCATTCACCCTTC
CGGCGTCCCAGATCAGCCTTCCGCCACGGTTCACACCCTTGTGAGGTATTGTCCGCTCTGGCCCC
CCTAGCCTCACGGTTTTGTCCTACAAAAGGCGCCTCACAAGGCGGAGATGGTGTGAACCCTTTTA
TACCCCAGTGACCTTCCTATTATGTTCGATGTGGGATTCAGGACTCCCCCTTGGGTCCGTGACAT
TT
Found at i:26195198 original size:63 final size:61
Alignment explanation
Indices: 26195115--26195247 Score: 160
Period size: 63 Copynumber: 2.1 Consensus size: 61
26195105 AAAAACCGCA
** * * *
26195115 TTGAATAATCTTCAATAAAAATTAGAGGAAATTATTCAAGATATTTTTTGTC-AAAAATGTC
1 TTGAATAATCCCCAATAAAAATGA-AAGAAATTATTCAAGATATTTTTTGTCAAAAAATGCC
* * *
26195176 TTGAATAATCCCCAATAAAAAAATGAAAGAGATTATTGAAGATGTTTTTTGTCAAAAAATGCC
1 TTGAATAATCCCCAAT--AAAAATGAAAGAAATTATTCAAGATATTTTTTGTCAAAAAATGCC
26195239 TTGAATAAT
1 TTGAATAAT
26195248 TCCTTTCAAT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
61 14 0.23
62 23 0.38
63 24 0.39
ACGTcount: A:0.44, C:0.09, G:0.13, T:0.35
Consensus pattern (61 bp):
TTGAATAATCCCCAATAAAAATGAAAGAAATTATTCAAGATATTTTTTGTCAAAAAATGCC
Found at i:26195849 original size:63 final size:63
Alignment explanation
Indices: 26195642--26195872 Score: 177
Period size: 63 Copynumber: 3.7 Consensus size: 63
26195632 GTTTTGTAAA
* ** * ** *
26195642 GGATTATTCAAGGCATTTTTTGGTCAAAAATACCTTGAATAAT-CCAAAAAATAGCATGAAAGTG
1 GGATTATTCAAGGTATTTTTTGG-CAAAAACGCCTTGAATAATCCCAAAAAAAAAAAAGAAA-TG
* * * * * * **
26195706 TGATCATTGAAGATATTTTTTGTCAGAAACGCCTTGAATAATCTCCAAAAAAAATTAA-AAA--
1 GGATTATTCAAGGTATTTTTTGGCAAAAACGCCTTGAATAATC-CCAAAAAAAAAAAAGAAATG
* * * * *
26195767 GGATTATTGAAAGT-GTTTTTGGCAAAAAATGCCTTCAATAATCCCAAAAAAAAAAAAGAAATG
1 GGATTATTCAAGGTATTTTTTGGC-AAAAACGCCTTGAATAATCCCAAAAAAAAAAAAGAAATG
* *
26195830 GGATTATTCAAGGTA-TTTTTGATCAAAAACGCCTTAAATAATC
1 GGATTATTCAAGGTATTTTTTG-GCAAAAACGCCTTGAATAATC
26195873 TCATTCAATT
Statistics
Matches: 130, Mismatches: 29, Indels: 17
0.74 0.16 0.10
Matches are distributed among these distances:
60 19 0.15
61 29 0.22
63 51 0.39
64 21 0.16
65 10 0.08
ACGTcount: A:0.43, C:0.13, G:0.15, T:0.30
Consensus pattern (63 bp):
GGATTATTCAAGGTATTTTTTGGCAAAAACGCCTTGAATAATCCCAAAAAAAAAAAAGAAATG
Found at i:26198176 original size:3 final size:3
Alignment explanation
Indices: 26198162--26198304 Score: 101
Period size: 3 Copynumber: 50.7 Consensus size: 3
26198152 GTATAGTTTG
*
26198162 TTA TTA TATA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TA GTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * *
26198207 TAA CATA TTA -TA TT- GTA TTA TTA TTT TTA TTA CTA TTA -TA TTA
1 TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * *
26198250 TTA -TA GTA -TA TGA -TA TT- TTA TTA TTA TTA -TA GTA -TA TTA -TA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
26198291 TTA TTA CTA TTA TT
1 TTA TTA TTA TTA TT
26198305 TTTTATTTTT
Statistics
Matches: 112, Mismatches: 15, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
2 20 0.18
3 88 0.79
4 4 0.04
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.59
Consensus pattern (3 bp):
TTA
Done.