Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 157 of 195
Found at i:26198202 original size:34 final size:33
Alignment explanation
Indices: 26198162--26198311 Score: 115
Period size: 31 Copynumber: 4.8 Consensus size: 33
26198152 GTATAGTTTG
26198162 TTATTATATATTATTATTATTATTATTATTATTA
1 TTATTATATATTATTATTATTATTATTA-TATTA
** *
26198196 TTATTATAGTA-TAACA-TATTA-TATTGTATTA
1 TTATTATA-TATTATTATTATTATTATTATATTA
* * *
26198227 TTATT-TTTATTACTATTA-TATTATTATAGTA
1 TTATTATATATTATTATTATTATTATTATATTA
* * *
26198258 -TATGATATTTTATTATTATTA-TAGTATATTA
1 TTATTATATATTATTATTATTATTATTATATTA
*
26198289 -TATTAT-TACTATTATT-TT-TTATT
1 TTATTATATATTATTATTATTATTATT
26198312 TTTTATTTTT
Statistics
Matches: 91, Mismatches: 18, Indels: 19
0.71 0.14 0.15
Matches are distributed among these distances:
29 7 0.08
30 17 0.19
31 43 0.47
32 6 0.07
33 5 0.05
34 11 0.12
35 2 0.02
ACGTcount: A:0.34, C:0.02, G:0.03, T:0.61
Consensus pattern (33 bp):
TTATTATATATTATTATTATTATTATTATATTA
Found at i:26198226 original size:49 final size:46
Alignment explanation
Indices: 26198163--26198296 Score: 141
Period size: 49 Copynumber: 2.9 Consensus size: 46
26198153 TATAGTTTGT
26198163 TATTATATATTATTATTATTATTATTATTATTATTATTATAGTATAACA
1 TATTATAT-TTATTATTATTATTATTATTATTATTATTAT--TATAACA
* * **
26198212 TATTATATTGTATTATTATTTTTATTACTATTA-TATTATTATAGTA
1 TATTATATT-TATTATTATTATTATTATTATTATTATTATTATAACA
* *
26198258 TATGATATTTTATTATTATTA-TAGTA-TATTA-TATTATTA
1 TATTATA-TTTATTATTATTATTATTATTATTATTATTATTA
26198297 CTATTATTTT
Statistics
Matches: 76, Mismatches: 7, Indels: 9
0.83 0.08 0.10
Matches are distributed among these distances:
44 13 0.17
45 4 0.05
46 21 0.28
47 2 0.03
48 7 0.09
49 29 0.38
ACGTcount: A:0.36, C:0.01, G:0.04, T:0.59
Consensus pattern (46 bp):
TATTATATTTATTATTATTATTATTATTATTATTATTATTATAACA
Found at i:26198244 original size:46 final size:46
Alignment explanation
Indices: 26198176--26198293 Score: 134
Period size: 46 Copynumber: 2.6 Consensus size: 46
26198166 TATATATTAT
* *
26198176 TATTATTATTATTATTATTATTAT-TATAGTATAACATATTATATTG
1 TATTATTATTATTATTACTATTATAT-TAGTATAACATATGATATTG
* * ** *
26198222 TATTATTATTTTTATTACTATTATATTATTATAGTATATGATATTT
1 TATTATTATTATTATTACTATTATATTAGTATAACATATGATATTG
*
26198268 TATTATTATTA-TAGTA-TATTATATTA
1 TATTATTATTATTATTACTATTATATTA
26198294 TTACTATTAT
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
44 10 0.16
45 4 0.06
46 47 0.76
47 1 0.02
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (46 bp):
TATTATTATTATTATTACTATTATATTAGTATAACATATGATATTG
Found at i:26199173 original size:45 final size:42
Alignment explanation
Indices: 26199104--26199212 Score: 114
Period size: 45 Copynumber: 2.5 Consensus size: 42
26199094 AGGTTTTTCT
*
26199104 TTTTCTATTTTAATTTCATTTTTTGCTTTTTATTTTTA-TTTA
1 TTTTCTATTTTAATTTCATTTTTTGCTTTTT-TTTTCATTTTA
* *
26199146 TTTTCATATTTTAAGCTTTTATTTTTTGGTTTTTTTTTCATTTTA
1 TTTTC-TATTTTAA--TTTCATTTTTTGCTTTTTTTTTCATTTTA
*
26199191 TTTTACTAGTTTTTATTT-ATTT
1 TTTT-CTA-TTTTAATTTCATTT
26199213 AGTAACTTTA
Statistics
Matches: 57, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
42 5 0.09
43 12 0.21
44 8 0.14
45 26 0.46
46 6 0.11
ACGTcount: A:0.17, C:0.06, G:0.05, T:0.72
Consensus pattern (42 bp):
TTTTCTATTTTAATTTCATTTTTTGCTTTTTTTTTCATTTTA
Found at i:26210965 original size:57 final size:56
Alignment explanation
Indices: 26210842--26210947 Score: 133
Period size: 57 Copynumber: 1.9 Consensus size: 56
26210832 AGATTTGTCT
* * * * * *
26210842 AGATC-ATTTTTTAGACTTGTGGTTCAATCTCAGTTATTTGACCTTGTCTCAGTCT
1 AGATCAATTTTTTAGACTTATGGTTCAATCTCAGTCATCTGACATTGACTCAGTCA
*
26210897 AGATCGATTTTTCTAGACTTATGGTTCAATCTCAGTCATCTGACATTGACT
1 AGATCAATTTTT-TAGACTTATGGTTCAATCTCAGTCATCTGACATTGACT
26210948 TGATGCAAGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
55 5 0.11
56 6 0.14
57 33 0.75
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (56 bp):
AGATCAATTTTTTAGACTTATGGTTCAATCTCAGTCATCTGACATTGACTCAGTCA
Found at i:26211249 original size:56 final size:56
Alignment explanation
Indices: 26211130--26211253 Score: 140
Period size: 56 Copynumber: 2.2 Consensus size: 56
26211120 CTAGGTTAGT
* * *
26211130 TTTTCTAGACTTACAGTTCAATCTCAGTCATTCGACCTCGATTCAATTCAGGTAAA
1 TTTTCCAGACTTACAGTTCAATCTCAGTCATTCGACCTCGACTCAATTCAGATAAA
* * ** * ** * *
26211186 TTATCCAGACTTACAGTTTAATCTTGGTCGTTCGACCTCGACTCGGTTCATATCAA
1 TTTTCCAGACTTACAGTTCAATCTCAGTCATTCGACCTCGACTCAATTCAGATAAA
26211242 TTTTCCAGACTT
1 TTTTCCAGACTT
26211254 GAGGTTTAAT
Statistics
Matches: 55, Mismatches: 13, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.25, C:0.24, G:0.14, T:0.37
Consensus pattern (56 bp):
TTTTCCAGACTTACAGTTCAATCTCAGTCATTCGACCTCGACTCAATTCAGATAAA
Found at i:26212436 original size:13 final size:13
Alignment explanation
Indices: 26212420--26212451 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
26212410 CCTATTTTAA
*
26212420 GTTTTTATTTTTT
1 GTTTTTATTTTTC
26212433 GTTTTTATTTTTC
1 GTTTTTATTTTTC
26212446 GTTTTT
1 GTTTTT
26212452 TTACTGGTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.06, C:0.03, G:0.09, T:0.81
Consensus pattern (13 bp):
GTTTTTATTTTTC
Found at i:26224050 original size:25 final size:24
Alignment explanation
Indices: 26224022--26224074 Score: 61
Period size: 25 Copynumber: 2.2 Consensus size: 24
26224012 TATTTTTTTC
**
26224022 ATTTTATTCTATATTTTATGTATAT
1 ATTTTATTCTATATCCTATGTAT-T
* *
26224047 ATTTTCTTTTATATCCTATGTATT
1 ATTTTATTCTATATCCTATGTATT
26224071 ATTT
1 ATTT
26224075 ATTTATTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
24 5 0.21
25 19 0.79
ACGTcount: A:0.25, C:0.08, G:0.04, T:0.64
Consensus pattern (24 bp):
ATTTTATTCTATATCCTATGTATT
Found at i:26225078 original size:10 final size:8
Alignment explanation
Indices: 26225058--26225124 Score: 57
Period size: 8 Copynumber: 8.2 Consensus size: 8
26225048 CCGCTCCAGG
26225058 TTTTTTT-
1 TTTTTTTA
**
26225065 TTTTTGAA
1 TTTTTTTA
26225073 TTTTTTTA
1 TTTTTTTA
26225081 TTTTTTTA
1 TTTTTTTA
* *
26225089 -TTATTTG
1 TTTTTTTA
26225096 TTTTTTTA
1 TTTTTTTA
26225104 TTTTATTTTA
1 -TTT-TTTTA
26225114 TTTTATTTA
1 TTTT-TTTA
26225123 TT
1 TT
26225125 AGATTAGGTT
Statistics
Matches: 47, Mismatches: 8, Indels: 8
0.75 0.13 0.13
Matches are distributed among these distances:
7 10 0.21
8 20 0.43
9 12 0.26
10 5 0.11
ACGTcount: A:0.15, C:0.00, G:0.03, T:0.82
Consensus pattern (8 bp):
TTTTTTTA
Found at i:26225099 original size:23 final size:22
Alignment explanation
Indices: 26225073--26225226 Score: 73
Period size: 23 Copynumber: 6.7 Consensus size: 22
26225063 TTTTTTTGAA
*
26225073 TTTTTTTATTTTTTTATTATTTG
1 TTTTTTTATTTTATT-TTATTTG
26225096 TTTTTTTATTTTATTTTATTT-
1 TTTTTTTATTTTATTTTATTTG
* ** * *
26225117 TATTTATTAGATTAGGTTTAGTTAGTA
1 T-TTTTTTATTTTA-TTTTA-TT--TG
26225144 TTTTTTTATCTTTATTTTATTT-
1 TTTTTTTAT-TTTATTTTATTTG
* * **
26225166 TTATTTTTGTTTTACTTTTCTTCA
1 TT-TTTTTATTTTA-TTTTATTTG
26225190 TTTTATTT-TTTTATTTTCATTT-
1 TTTT-TTTATTTTATTTT-ATTTG
* *
26225212 TTATTTTGTTTTATT
1 TTTTTTTATTTTATT
26225227 ATTCAATTTT
Statistics
Matches: 103, Mismatches: 15, Indels: 27
0.71 0.10 0.19
Matches are distributed among these distances:
21 4 0.04
22 35 0.34
23 40 0.39
24 7 0.07
25 2 0.02
26 11 0.11
27 4 0.04
ACGTcount: A:0.16, C:0.03, G:0.05, T:0.75
Consensus pattern (22 bp):
TTTTTTTATTTTATTTTATTTG
Found at i:26225118 original size:5 final size:5
Alignment explanation
Indices: 26225076--26225226 Score: 53
Period size: 5 Copynumber: 28.4 Consensus size: 5
26225066 TTTTGAATTT
* *
26225076 TTTTA TTTTT TTATTA TTTGTTT TTTTA TTTTA TTTTA TTTTA -TTTA
1 TTTTA TTTTA TT-TTA -TT-TTA TTTTA TTTTA TTTTA TTTTA TTTTA
* * *
26225123 TTAGATTA GGTTTA -GTTA GTATTT- TTTTA TCTTTA TTTTA TTTTTA TTTTTG
1 TT---TTA -TTTTA TTTTA -T-TTTA TTTTA T-TTTA TTTTA -TTTTA -TTTTA
* * *
26225175 TTTTA CTTTT- CTTCA TTTTA -TTT- TTTTA TTTTCA TTTTTA TTTTG
1 TTTTA -TTTTA TTTTA TTTTA TTTTA TTTTA TTTT-A -TTTTA TTTTA
26225220 TTTTA TT
1 TTTTA TT
26225227 ATTCAATTTT
Statistics
Matches: 111, Mismatches: 16, Indels: 38
0.67 0.10 0.23
Matches are distributed among these distances:
4 18 0.16
5 51 0.46
6 28 0.25
7 10 0.09
8 3 0.03
9 1 0.01
ACGTcount: A:0.17, C:0.03, G:0.05, T:0.75
Consensus pattern (5 bp):
TTTTA
Found at i:26225167 original size:6 final size:6
Alignment explanation
Indices: 26225146--26225218 Score: 51
Period size: 6 Copynumber: 11.7 Consensus size: 6
26225136 AGTTAGTATT
* * *
26225146 TTTTTA TCTTTA -TTTTA TTTTTA TTTTT- GTTTTA CTTTTCTTCA TTTTATT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA --TTT-TT-A TTTT-TA
*
26225197 TTTTTA TTTTCA TTTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTT
26225219 GTTTTATTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
5 8 0.15
6 30 0.58
7 5 0.10
8 6 0.12
9 2 0.04
10 1 0.02
ACGTcount: A:0.14, C:0.07, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:26225228 original size:13 final size:12
Alignment explanation
Indices: 26225074--26225229 Score: 67
Period size: 12 Copynumber: 12.8 Consensus size: 12
26225064 TTTTTTGAAT
26225074 TTTTTTATTTT-
1 TTTTTTATTTTA
*
26225085 TTTATTATTTGT-
1 TTTTTTATTT-TA
26225097 TTTTTTATTTTA
1 TTTTTTATTTTA
26225109 --TTTTATTTTA
1 TTTTTTATTTTA
* **
26225119 TTTATTAGATTA
1 TTTTTTATTTTA
** *
26225131 -GGTTTAGTTAGTA
1 TTTTTTA-TT-TTA
26225144 TTTTTTTATCTTTA
1 -TTTTTTAT-TTTA
*
26225158 TTTTAT-TTTTA
1 TTTTTTATTTTA
*
26225169 -TTTTTGTTTTA
1 TTTTTTATTTTA
26225180 CTTTTCTTCATTTTA
1 -TTTT-TT-ATTTTA
26225195 TTTTTTTATTTTCA
1 -TTTTTTATTTT-A
*
26225209 -TTTTTATTTTG
1 TTTTTTATTTTA
26225220 TTTTATTATT
1 TTTT-TTATT
26225230 CAATTTTCTT
Statistics
Matches: 109, Mismatches: 19, Indels: 32
0.68 0.12 0.20
Matches are distributed among these distances:
10 14 0.13
11 22 0.20
12 31 0.28
13 20 0.18
14 8 0.07
15 14 0.13
ACGTcount: A:0.17, C:0.03, G:0.05, T:0.75
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:26225394 original size:119 final size:119
Alignment explanation
Indices: 26225251--26225714 Score: 568
Period size: 119 Copynumber: 3.8 Consensus size: 119
26225241 AAATAAAAAT
* * *
26225251 AAAAAAAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAA
1 AAAAAAAA-ATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAA
* * *
26225316 ATA-TTTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
65 AAAGTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTC
26225369 AAAAAAAAAAGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAA
1 -AAAAAAAAA-TTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC-AA
* *
26225434 AAAAAGGTTTTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTC
63 AAAAA-G-TTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAA-ATTTC
* *
26225494 ----AAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAA
1 AAAAAAAAATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAA
*
26225555 AAGGTTTGCTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
66 AA-GTTT-TTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAA-TTTC
* * * * *
26225612 AAAAAAATA-TTTCTTG-GGAAAAAATTGAAAGTATCAATTTTTCTTAAAAAAAAAAATTTTTAA
1 AAAAAAAAATTTTTTTGAGG-AAAAGTTGAAAGTATCAATTTTTCTT-AAAAATAAAA-TTTCAA
*
26225675 AAAAA-TCAATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
63 AAAAAGT---TTTTTGAGGAAAAGTTGAAAGTATCAATTTT
26225715 TTCTGCATAA
Statistics
Matches: 306, Mismatches: 20, Indels: 34
0.85 0.06 0.09
Matches are distributed among these distances:
117 3 0.01
118 55 0.18
119 105 0.34
120 12 0.04
121 31 0.10
122 13 0.04
123 78 0.25
124 5 0.02
125 4 0.01
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (119 bp):
AAAAAAAAATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAA
AAGTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTC
Found at i:26225444 original size:61 final size:58
Alignment explanation
Indices: 26225252--26225714 Score: 538
Period size: 61 Copynumber: 7.7 Consensus size: 58
26225242 AATAAAAATA
*
26225252 AAAAAAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAAAT-T-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
*
26225312 AAAAATATTTTTTT-AGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAAATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
*
26225369 AAAAAAAAAAGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
1 ---AAAAAAA-TTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * *
26225431 AAAAAAAAGGTTTTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTC
1 -AAAAAAA--TTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-ATTTC
* * *
26225494 --AAAAATATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
1 AAAAAAATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
** *
26225550 AAAAAAAGGTTTGCTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
1 AAAAAAA--TTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAA-TTTC
* * * * *
26225612 AAAAAAATATTTCTTG-GGAAAAAATTGAAAGTATCAATTTTTCTTAAAAAAAAAAATTTTT
1 AAAAAAAT-TTTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAAA-TTTC
* *
26225673 AAAAAAATCAATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAAT--TTTTTTGAGGAAAAGTTGAAAGTATCAATTTT
26225715 TTCTGCATAA
Statistics
Matches: 355, Mismatches: 29, Indels: 36
0.85 0.07 0.09
Matches are distributed among these distances:
56 4 0.01
57 45 0.13
58 48 0.14
59 1 0.00
60 66 0.19
61 98 0.28
62 87 0.25
63 6 0.02
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (58 bp):
AAAAAAATTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:26225715 original size:62 final size:59
Alignment explanation
Indices: 26225252--26225714 Score: 530
Period size: 62 Copynumber: 7.7 Consensus size: 59
26225242 AATAAAAATA
*
26225252 AAAAAAATATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAAATA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* *
26225312 --AAAAATATTTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAAATAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* *
26225369 AAAAAAAAAAGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
1 AAAAAAATAA---TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
26225431 AAAAAAA-AGGTTTTTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTC
1 AAAAAAATA---ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-ATTTC
* *
26225494 --AAAAAT-ATTTTTGAAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
1 AAAAAAATAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
** *
26225550 AAAAAAA-GGTTTGCTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
1 AAAAAAATAATTT--TTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAA-TTTC
* * * *
26225612 AAAAAAAT-ATTTCTTG-GGAAAAAATTGAAAGTATCAATTTTTCTTAAAAAAAAAAATTTTT
1 AAAAAAATAATTT-TTGAGG-AAAAGTTGAAAGTATCAATTTTCCTT-AAAAATAAAA-TTTC
*
26225673 AAAAAAATCAATTTTTGGGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAAT-AATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
26225715 TTCTGCATAA
Statistics
Matches: 350, Mismatches: 29, Indels: 46
0.82 0.07 0.11
Matches are distributed among these distances:
56 4 0.01
57 50 0.14
58 52 0.15
59 6 0.02
60 37 0.11
61 92 0.26
62 99 0.28
63 10 0.03
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (59 bp):
AAAAAAATAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:26228893 original size:15 final size:16
Alignment explanation
Indices: 26228868--26228899 Score: 57
Period size: 15 Copynumber: 2.1 Consensus size: 16
26228858 TCTGCATACA
26228868 TGCATTTTTCATTCAT
1 TGCATTTTTCATTCAT
26228884 TGCA-TTTTCATTCAT
1 TGCATTTTTCATTCAT
26228899 T
1 T
26228900 ACACTTAACA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.19, C:0.19, G:0.06, T:0.56
Consensus pattern (16 bp):
TGCATTTTTCATTCAT
Found at i:26233581 original size:187 final size:184
Alignment explanation
Indices: 26233239--26233593 Score: 428
Period size: 189 Copynumber: 1.9 Consensus size: 184
26233229 ATAATATGAC
* * * **
26233239 AATTATTTTTATTGAAATTTCATTTAAATTATTCCACCATTTGGACAAATTTAAAGAAAATTTCT
1 AATTATTGTTATTGAAATTTCATCTAAACTATTCCACCATTTAAACAAATTTAAAGAAAATTTCT
* * *
26233304 CACCTAAAGATTTGTTAGAAATTTAACATTTGAAATTTCTAAAAATCTCATCCTTGGATAATTAC
66 CACCTAAAGATTTGTTAGAAATTTAACATTTAAAATTTCTAAAAATCTCATCATTGGATAATTAA
**
26233369 CAAATATTTTCAACCCAAATTTTATTTTTTTATTTTTTTGGTTTCAAAATAAATATT
131 CAAATATACTCAA--CAAATTTTA-TTTTTTATTTTTTTGGTTTCAAAATAAATATT
* * *
26233426 AATTATTGTTATTGAAACTTT-ATCTAAACTATTCCACCATTTCAAACAAATTTAGATAGAATTT
1 AATTATTGTTATTGAAA-TTTCATCTAAACTATTCCACCATTT-AAACAAATTTAAAGAAAATTT
* * * * *
26233490 CTCACCTTAGGAATTT-TATAGAAATTTACCATTTAAAATTTCTATAAATTTCATCATTGGATAA
64 CTCACCTAAAG-ATTTGT-TAGAAATTTAACATTTAAAATTTCTAAAAATCTCATCATTGGATAA
* **
26233554 TTAATATTTATACTCAA-AATATTTTATTTTTTATTTTTTT
127 TTAACAAATATACTCAACAA-ATTTTATTTTTTATTTTTTT
26233594 CAAATTTAAT
Statistics
Matches: 142, Mismatches: 21, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
186 16 0.11
187 41 0.29
188 29 0.20
189 56 0.39
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.45
Consensus pattern (184 bp):
AATTATTGTTATTGAAATTTCATCTAAACTATTCCACCATTTAAACAAATTTAAAGAAAATTTCT
CACCTAAAGATTTGTTAGAAATTTAACATTTAAAATTTCTAAAAATCTCATCATTGGATAATTAA
CAAATATACTCAACAAATTTTATTTTTTATTTTTTTGGTTTCAAAATAAATATT
Found at i:26235310 original size:23 final size:23
Alignment explanation
Indices: 26235280--26235326 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
26235270 GATACTTTTT
26235280 TTTTTTTTACTAAAAATTGCTCC
1 TTTTTTTTACTAAAAATTGCTCC
26235303 TTTTTTTTACTAAAAATTGCTCC
1 TTTTTTTTACTAAAAATTGCTCC
26235326 T
1 T
26235327 CTAAACAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.04, T:0.53
Consensus pattern (23 bp):
TTTTTTTTACTAAAAATTGCTCC
Found at i:26235373 original size:42 final size:43
Alignment explanation
Indices: 26235316--26235538 Score: 256
Period size: 43 Copynumber: 5.3 Consensus size: 43
26235306 TTTTTACTAA
* *
26235316 AAATTGCTCCTCTAAACAGAGGAAACAGAACTTTAG-AAAAAT
1 AAATGGCTCCTCTAAACAGAGGAAACAGAACTTTTGAAAAAAT
**
26235358 AAATGGCTTTTCTAAACAGA-GACAACAGAACTTTTGAAAAAAT
1 AAATGGCTCCTCTAAACAGAGGA-AACAGAACTTTTGAAAAAAT
* * * *
26235401 AAATGGTTCCTCTAAATAGAGTAAA-AAAAC-TTTGAAAAAAT
1 AAATGGCTCCTCTAAACAGAGGAAACAGAACTTTTGAAAAAAT
* * *
26235442 AAATGGCTCCTCTAAACAGAGGCAACAAAACTTTTGGAAAAAT
1 AAATGGCTCCTCTAAACAGAGGAAACAGAACTTTTGAAAAAAT
* * * * *
26235485 AAATGGCTCTTCTAAATAGAGGCAACAGAATTTTTGTAAAAAT
1 AAATGGCTCCTCTAAACAGAGGAAACAGAACTTTTGAAAAAAT
*
26235528 AAATTGCTCCT
1 AAATGGCTCCT
26235539 TGACAATCAT
Statistics
Matches: 154, Mismatches: 22, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
41 34 0.22
42 38 0.25
43 81 0.53
44 1 0.01
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.26
Consensus pattern (43 bp):
AAATGGCTCCTCTAAACAGAGGAAACAGAACTTTTGAAAAAAT
Found at i:26235440 original size:84 final size:85
Alignment explanation
Indices: 26235316--26235538 Score: 270
Period size: 84 Copynumber: 2.6 Consensus size: 85
26235306 TTTTTACTAA
* * * **
26235316 AAATTGCTCCTCTAAACAGAGGAAACAGAACTTTAGAAAAATAAATGGCTTTTCTAAACAGAGAC
1 AAATGGCTCCTCTAAATAGAGGAAACAAAACTTTAGAAAAATAAATGGCTCCTCTAAACAGAGAC
*
26235381 AACAGAACTTTTGAAAAAAT
66 AACAAAACTTTTGAAAAAAT
* * *
26235401 AAATGGTTCCTCTAAATAGAGTAAA-AAAACTTT-GAAAAAATAAATGGCTCCTCTAAACAGAGG
1 AAATGGCTCCTCTAAATAGAGGAAACAAAACTTTAG-AAAAATAAATGGCTCCTCTAAACAGAGA
*
26235464 CAACAAAACTTTTGGAAAAAT
65 CAACAAAACTTTTGAAAAAAT
* * * * * *
26235485 AAATGGCTCTTCTAAATAGAGGCAACAGAATTTTTGTAAAAATAAATTGCTCCT
1 AAATGGCTCCTCTAAATAGAGGAAACAAAACTTTAG-AAAAATAAATGGCTCCT
26235539 TGACAATCAT
Statistics
Matches: 117, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
83 1 0.01
84 72 0.62
85 27 0.23
86 17 0.15
ACGTcount: A:0.45, C:0.15, G:0.14, T:0.26
Consensus pattern (85 bp):
AAATGGCTCCTCTAAATAGAGGAAACAAAACTTTAGAAAAATAAATGGCTCCTCTAAACAGAGAC
AACAAAACTTTTGAAAAAAT
Found at i:26235720 original size:24 final size:25
Alignment explanation
Indices: 26235682--26235728 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
26235672 TTCAGATATG
26235682 CAAAATTTTAAATTTGTAAGATTTC
1 CAAAATTTTAAATTTGTAAGATTTC
* *
26235707 CAAAA-TTTACATTTGTGAGATT
1 CAAAATTTTAAATTTGTAAGATT
26235729 CTCATCTAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.38, C:0.09, G:0.11, T:0.43
Consensus pattern (25 bp):
CAAAATTTTAAATTTGTAAGATTTC
Found at i:26235882 original size:66 final size:66
Alignment explanation
Indices: 26235796--26235933 Score: 152
Period size: 66 Copynumber: 2.1 Consensus size: 66
26235786 ATTTTGGAGA
* * *
26235796 TTCACATCCAAAAGTTCAAAGCTTTTTATTTGAGTTCAAAGGTTCACATTCAATAAAACTTAGAG
1 TTCACATCCAAAAGTTCAAAGCTTCTCATTTGAGTTCAAAGATTCACATTCAATAAAACTTAGAG
26235861 T
66 T
* * ** * * ** *
26235862 TTCACATCTAAAA-TCTCAAAGGTTCTCATTTGAGTTTGAATATTCACATTCGATAAATTTTAGG
1 TTCACATCCAAAAGT-TCAAAGCTTCTCATTTGAGTTCAAAGATTCACATTCAATAAAACTTAGA
26235926 GT
65 GT
26235928 TTCACA
1 TTCACA
26235934 CCTCAAAGAT
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
65 1 0.02
66 58 0.98
ACGTcount: A:0.34, C:0.17, G:0.12, T:0.37
Consensus pattern (66 bp):
TTCACATCCAAAAGTTCAAAGCTTCTCATTTGAGTTCAAAGATTCACATTCAATAAAACTTAGAG
T
Found at i:26236000 original size:25 final size:21
Alignment explanation
Indices: 26235959--26236117 Score: 113
Period size: 25 Copynumber: 7.0 Consensus size: 21
26235949 TTTGAAACTC
26235959 AAAACTCAAAGATTCTCATTT
1 AAAACTCAAAGATTCTCATTT
*
26235980 GAAAACGTCTTAAAGATTCTCGTTT
1 -AAAAC-TC--AAAGATTCTCATTT
* * *
26236005 AAGACTCAAAGGTTTTCATTT
1 AAAACTCAAAGATTCTCATTT
26236026 GAAAATGTCTCAAAGATTCTCATTT
1 -AAAA---CTCAAAGATTCTCATTT
* *
26236051 AAGAA-TCAAATATTTTCATTT
1 AA-AACTCAAAGATTCTCATTT
* *
26236072 AAAAACATTTTAAAAATTCTCATTT
1 -AAAAC---TCAAAGATTCTCATTT
*
26236097 AAGACTCAAAGATTCTCATTT
1 AAAACTCAAAGATTCTCATTT
26236118 GAGGGCTCAC
Statistics
Matches: 108, Mismatches: 16, Indels: 27
0.72 0.11 0.18
Matches are distributed among these distances:
21 41 0.38
22 10 0.09
23 4 0.04
24 10 0.09
25 43 0.40
ACGTcount: A:0.39, C:0.15, G:0.09, T:0.37
Consensus pattern (21 bp):
AAAACTCAAAGATTCTCATTT
Found at i:26236029 original size:46 final size:46
Alignment explanation
Indices: 26235962--26236119 Score: 208
Period size: 46 Copynumber: 3.4 Consensus size: 46
26235952 GAAACTCAAA
*
26235962 ACTCAAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCGTTTAAG
1 ACTCAAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAG
* * * *
26236008 ACTCAAAGGTTTTCATTTGAAAATGTCTCAAAGATTCTCATTTAAG
1 ACTCAAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAG
* * * * * * *
26236054 AATCAAATATTTTCATTTAAAAACATTTTAAAAATTCTCATTTAAG
1 ACTCAAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAG
26236100 ACTCAAAGATTCTCATTTGA
1 ACTCAAAGATTCTCATTTGA
26236120 GGGCTCACAA
Statistics
Matches: 94, Mismatches: 18, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
46 94 1.00
ACGTcount: A:0.38, C:0.15, G:0.09, T:0.37
Consensus pattern (46 bp):
ACTCAAAGATTCTCATTTGAAAACGTCTTAAAGATTCTCATTTAAG
Found at i:26237313 original size:14 final size:14
Alignment explanation
Indices: 26237294--26237342 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
26237284 CCTTTTCATT
26237294 TTTTTTCTCTTTCA
1 TTTTTTCTCTTTCA
*
26237308 TTTTTTTTCTTTTCCA
1 TTTTTTCTC-TTT-CA
26237324 TTTTTTC-CTTT--
1 TTTTTTCTCTTTCA
26237335 TTTTTTCT
1 TTTTTTCT
26237343 TTTTTTTTCT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
11 7 0.23
14 11 0.37
15 4 0.13
16 8 0.27
ACGTcount: A:0.04, C:0.18, G:0.00, T:0.78
Consensus pattern (14 bp):
TTTTTTCTCTTTCA
Found at i:26237334 original size:15 final size:15
Alignment explanation
Indices: 26237272--26237335 Score: 67
Period size: 16 Copynumber: 4.1 Consensus size: 15
26237262 AATTTGAGTC
*
26237272 TTCATTTTCTCTCCTT
1 TTCATTTT-TTTCCTT
*
26237288 TTCATTTTTTTTCTCT
1 TTCATTTTTTTCCT-T
*
26237304 TTCATTTTTTTTCTT
1 TTCATTTTTTTCCTT
26237319 TTCCA-TTTTTTCCTT
1 TT-CATTTTTTTCCTT
26237334 TT
1 TT
26237336 TTTTTCTTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
15 18 0.42
16 25 0.58
ACGTcount: A:0.06, C:0.22, G:0.00, T:0.72
Consensus pattern (15 bp):
TTCATTTTTTTCCTT
Found at i:26237340 original size:11 final size:10
Alignment explanation
Indices: 26237286--26237356 Score: 63
Period size: 10 Copynumber: 7.0 Consensus size: 10
26237276 TTTTCTCTCC
26237286 TTTTCATTTTT
1 TTTTC-TTTTT
**
26237297 TTTCTCTTTCA
1 TTT-TCTTTTT
*
26237308 TTTT-TTTTC
1 TTTTCTTTTT
**
26237317 TTTTCCATTT
1 TTTTCTTTTT
*
26237327 TTTCCTTTTT
1 TTTTCTTTTT
26237337 TTTTCTTTTT
1 TTTTCTTTTT
26237347 TTTTCTTTTT
1 TTTTCTTTTT
26237357 CTTCATTCGT
Statistics
Matches: 47, Mismatches: 11, Indels: 5
0.75 0.17 0.08
Matches are distributed among these distances:
9 7 0.15
10 29 0.62
11 9 0.19
12 2 0.04
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTCTTTTT
Found at i:26237345 original size:16 final size:15
Alignment explanation
Indices: 26237285--26237356 Score: 65
Period size: 15 Copynumber: 4.7 Consensus size: 15
26237275 ATTTTCTCTC
*
26237285 CTTTTCATTTTTTTT
1 CTTTTCTTTTTTTTT
*
26237300 CTCTTTCATTTTTTTT
1 CT-TTTCTTTTTTTTT
** *
26237316 CTTTTCCATTTTTTC
1 CTTTTCTTTTTTTTT
26237331 CTTTT-TTTTTCTTTT
1 CTTTTCTTTTT-TTTT
*
26237346 TTTTTCTTTTT
1 CTTTTCTTTTT
26237357 CTTCATTCGT
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
14 3 0.06
15 24 0.51
16 20 0.43
ACGTcount: A:0.04, C:0.17, G:0.00, T:0.79
Consensus pattern (15 bp):
CTTTTCTTTTTTTTT
Found at i:26237357 original size:16 final size:16
Alignment explanation
Indices: 26237286--26237359 Score: 76
Period size: 16 Copynumber: 4.4 Consensus size: 16
26237276 TTTTCTCTCC
*
26237286 TTTTCATTTTTTTTCT
1 TTTTCTTTTTTTTTCT
* *
26237302 CTTTCATTTTTTTTCT
1 TTTTCTTTTTTTTTCT
* *
26237318 TTTCCATTTTTTCCTTTTT
1 TTTTC-TTTTTT--TTTCT
26237337 TTTTCTTTTTTTTTCT
1 TTTTCTTTTTTTTTCT
26237353 TTTTCTT
1 TTTTCTT
26237360 CATTCGTTCA
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
16 29 0.60
17 5 0.10
18 6 0.12
19 8 0.17
ACGTcount: A:0.04, C:0.16, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTCTTTTTTTTTCT
Found at i:26240260 original size:16 final size:17
Alignment explanation
Indices: 26240241--26240275 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
26240231 CTATAATATG
26240241 AAAATGATACATAT-AC
1 AAAATGATACATATGAC
*
26240257 AAAATGTTACATATGAC
1 AAAATGATACATATGAC
26240274 AA
1 AA
26240276 TGAAAATGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 13 0.76
17 4 0.24
ACGTcount: A:0.54, C:0.11, G:0.09, T:0.26
Consensus pattern (17 bp):
AAAATGATACATATGAC
Found at i:26244934 original size:17 final size:17
Alignment explanation
Indices: 26244912--26244956 Score: 81
Period size: 17 Copynumber: 2.6 Consensus size: 17
26244902 ATTTGAAAGT
*
26244912 ATTTTTTTAATTTAAAA
1 ATTTTTATAATTTAAAA
26244929 ATTTTTATAATTTAAAA
1 ATTTTTATAATTTAAAA
26244946 ATTTTTATAAT
1 ATTTTTATAAT
26244957 ATTTCTAAAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTTTTATAATTTAAAA
Found at i:26253300 original size:2 final size:2
Alignment explanation
Indices: 26253293--26253331 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
26253283 AGAAAGAATG
26253293 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -T AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26253332 TTTTTTTGAA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:26253394 original size:20 final size:21
Alignment explanation
Indices: 26253371--26253419 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
26253361 TTTCTTTGTT
*
26253371 TTTATTTTGTTATTTTTA-TT
1 TTTATTTTATTATTTTTAGTT
*
26253391 TTTATTTTATTTTTTTTAGTT
1 TTTATTTTATTATTTTTAGTT
*
26253412 TTAATTTT
1 TTTATTTT
26253420 TCTTTATTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
20 16 0.64
21 9 0.36
ACGTcount: A:0.16, C:0.00, G:0.04, T:0.80
Consensus pattern (21 bp):
TTTATTTTATTATTTTTAGTT
Found at i:26253404 original size:26 final size:26
Alignment explanation
Indices: 26253369--26253428 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 26
26253359 TTTTTCTTTG
*
26253369 TTTTTA-TTTTGTTA-TTTTTATTTT
1 TTTTTATTTTTGTTAGTTTTAATTTT
*
26253393 TATTTTATTTTTTTTAGTTTTAATTTT
1 T-TTTTATTTTTGTTAGTTTTAATTTT
*
26253420 TCTTTATTT
1 TTTTTATTT
26253429 ATTTATTGAT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 1 0.03
25 5 0.17
26 14 0.47
27 10 0.33
ACGTcount: A:0.15, C:0.02, G:0.03, T:0.80
Consensus pattern (26 bp):
TTTTTATTTTTGTTAGTTTTAATTTT
Found at i:26253426 original size:31 final size:31
Alignment explanation
Indices: 26253391--26253457 Score: 77
Period size: 31 Copynumber: 2.2 Consensus size: 31
26253381 TATTTTTATT
26253391 TTTATTTTATTT-TT-TTTAGTTTTAATTTTTC
1 TTTATTTTATTTATTATTT-G-TTTAATTTTTC
*
26253422 TTTA-TTTATTTATTGATTTGTTTATTTTTTC
1 TTTATTTTATTTATT-ATTTGTTTAATTTTTC
26253453 TTTAT
1 TTTAT
26253458 ATACATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 7
0.79 0.03 0.18
Matches are distributed among these distances:
30 7 0.23
31 20 0.65
32 1 0.03
33 3 0.10
ACGTcount: A:0.16, C:0.03, G:0.04, T:0.76
Consensus pattern (31 bp):
TTTATTTTATTTATTATTTGTTTAATTTTTC
Found at i:26254343 original size:15 final size:14
Alignment explanation
Indices: 26254307--26254354 Score: 55
Period size: 13 Copynumber: 3.5 Consensus size: 14
26254297 TAATATTCAC
*
26254307 AATAAAAGA-AAAT
1 AATAAAATATAAAT
*
26254320 AATAAAATATTAAT
1 AATAAAATATAAAT
26254334 AATGAAAATATAAAT
1 AAT-AAAATATAAAT
26254349 -ATAAAA
1 AATAAAA
26254355 AGACATAAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 12 0.40
14 8 0.27
15 10 0.33
ACGTcount: A:0.71, C:0.00, G:0.04, T:0.25
Consensus pattern (14 bp):
AATAAAATATAAAT
Found at i:26258734 original size:18 final size:18
Alignment explanation
Indices: 26258706--26258740 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
26258696 ATTTGACAAC
26258706 AAATAAATAAAATATATAA
1 AAATAAATAAAA-ATATAA
26258725 AAAT-AATAAAAATATA
1 AAATAAATAAAAATATA
26258741 TTATTATTAC
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 7 0.44
19 4 0.25
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (18 bp):
AAATAAATAAAAATATAA
Found at i:26259086 original size:5 final size:5
Alignment explanation
Indices: 26259078--26259119 Score: 50
Period size: 5 Copynumber: 8.4 Consensus size: 5
26259068 AACTATTCTA
**
26259078 TTTTC TTTTC TTTTC TTTTC TCTTT- TTTGG TTTTC TTTTC TT
1 TTTTC TTTTC TTTTC TTTTC T-TTTC TTTTC TTTTC TTTTC TT
26259120 ATTTTTTATA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
4 2 0.06
5 27 0.84
6 3 0.09
ACGTcount: A:0.00, C:0.17, G:0.05, T:0.79
Consensus pattern (5 bp):
TTTTC
Found at i:26260048 original size:6 final size:6
Alignment explanation
Indices: 26260037--26260066 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
26260027 ATTTTCAATC
26260037 TTGATT TTGATT TTGATT TTGATT TT-ATT T
1 TTGATT TTGATT TTGATT TTGATT TTGATT T
26260067 AGTTTTAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.17
6 20 0.83
ACGTcount: A:0.17, C:0.00, G:0.13, T:0.70
Consensus pattern (6 bp):
TTGATT
Found at i:26265010 original size:18 final size:17
Alignment explanation
Indices: 26264969--26265011 Score: 50
Period size: 17 Copynumber: 2.5 Consensus size: 17
26264959 CTTGTCATTT
26264969 TAGGATTTTTTTAGAAC
1 TAGGATTTTTTTAGAAC
* * *
26264986 AATGATTTTTTTATGTAC
1 TAGGATTTTTTTA-GAAC
26265004 TAGGATTT
1 TAGGATTT
26265012 CATTTTATTT
Statistics
Matches: 20, Mismatches: 5, Indels: 1
0.77 0.19 0.04
Matches are distributed among these distances:
17 11 0.55
18 9 0.45
ACGTcount: A:0.28, C:0.05, G:0.16, T:0.51
Consensus pattern (17 bp):
TAGGATTTTTTTAGAAC
Found at i:26265655 original size:9 final size:9
Alignment explanation
Indices: 26265641--26265679 Score: 55
Period size: 8 Copynumber: 4.4 Consensus size: 9
26265631 AAAAAGTATG
26265641 ATGAAAAAA
1 ATGAAAAAA
26265650 ATGAAAAAAA
1 ATG-AAAAAA
26265660 ATG-AAAAA
1 ATGAAAAAA
26265668 A-GAAAAAA
1 ATGAAAAAA
26265676 ATGA
1 ATGA
26265680 TAGGACAAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
7 1 0.04
8 12 0.44
9 5 0.19
10 9 0.33
ACGTcount: A:0.77, C:0.00, G:0.13, T:0.10
Consensus pattern (9 bp):
ATGAAAAAA
Found at i:26265676 original size:10 final size:10
Alignment explanation
Indices: 26265644--26265668 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26265634 AAGTATGATG
26265644 AAAAAAATGA
1 AAAAAAATGA
26265654 AAAAAAATGA
1 AAAAAAATGA
26265664 AAAAA
1 AAAAA
26265669 GAAAAAAATG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (10 bp):
AAAAAAATGA
Found at i:26266973 original size:18 final size:18
Alignment explanation
Indices: 26266928--26266962 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
26266918 TCTCGATTAC
26266928 AAAGCTTTACGAATCTTA
1 AAAGCTTTACGAATCTTA
26266946 AAAGCTTTACGAATCTT
1 AAAGCTTTACGAATCTT
26266963 CAATATTTTA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.37, C:0.17, G:0.11, T:0.34
Consensus pattern (18 bp):
AAAGCTTTACGAATCTTA
Found at i:26266989 original size:18 final size:17
Alignment explanation
Indices: 26266967--26267018 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
26266957 AATCTTCAAT
*
26266967 ATTTTACTAATCTTGGG
1 ATTTTTCTAATCTTGGG
* **
26266984 ATTTTTGTGAATCTTAAG
1 ATTTTTCT-AATCTTGGG
26267002 ATTTTTGCTAATCTTGG
1 ATTTTT-CTAATCTTGG
26267019 AGTCTTTGTG
Statistics
Matches: 26, Mismatches: 7, Indels: 3
0.72 0.19 0.08
Matches are distributed among these distances:
17 6 0.23
18 19 0.73
19 1 0.04
ACGTcount: A:0.23, C:0.10, G:0.17, T:0.50
Consensus pattern (17 bp):
ATTTTTCTAATCTTGGG
Found at i:26267045 original size:54 final size:53
Alignment explanation
Indices: 26266987--26267148 Score: 154
Period size: 54 Copynumber: 3.1 Consensus size: 53
26266977 TCTTGGGATT
* * *
26266987 TTTGTGAATCTTAAGATTTTTGCT-AATCT-TGGAGTCTTTGTGAAT-TTTGGAACC
1 TTTGTGAATCTTAA-ATTTTT-ATGAATCTCAGGA-TCTTTGTGAATCTTAGGAA-C
26267041 TTTGTGAATCTTGAAATTTTTATGAATCTCAGGATCTTTGTGAATCTTAGGAAC
1 TTTGTGAATCTT-AAATTTTTATGAATCTCAGGATCTTTGTGAATCTTAGGAAC
* * * * * * *
26267095 TTTATGAATCTTAAAATCTTGTGAATCT-AGAATTTTTGTGAATTTTAGG-AC
1 TTTGTGAATCTTAAATTTTTATGAATCTCAGGATCTTTGTGAATCTTAGGAAC
26267146 TTT
1 TTT
26267149 TGCAAATCTG
Statistics
Matches: 94, Mismatches: 10, Indels: 11
0.82 0.09 0.10
Matches are distributed among these distances:
51 5 0.05
52 18 0.19
53 14 0.15
54 46 0.49
55 11 0.12
ACGTcount: A:0.27, C:0.10, G:0.18, T:0.46
Consensus pattern (53 bp):
TTTGTGAATCTTAAATTTTTATGAATCTCAGGATCTTTGTGAATCTTAGGAAC
Found at i:26267084 original size:18 final size:18
Alignment explanation
Indices: 26266987--26267252 Score: 124
Period size: 18 Copynumber: 15.0 Consensus size: 18
26266977 TCTTGGGATT
*
26266987 TTTGTGAATCTTA-AGATT
1 TTTGTGAATCTTAGA-ATC
* *
26267005 TTTGCT-AATCTTGGAGTC
1 TTTG-TGAATCTTAGAATC
* * *
26267023 TTTGTGAATTTTGGAACC
1 TTTGTGAATCTTAGAATC
*
26267041 TTTGTGAATCTT-GAAATT
1 TTTGTGAATCTTAG-AATC
* * *
26267059 TTTATGAATCTCAGGATC
1 TTTGTGAATCTTAGAATC
26267077 TTTGTGAATCTTAGGAA-C
1 TTTGTGAATCTTA-GAATC
* *
26267095 TTTATGAATCTTAAAATC
1 TTTGTGAATCTTAGAATC
*
26267113 -TTGTGAATC-TAGAATT
1 TTTGTGAATCTTAGAATC
* *
26267129 TTTGTGAATTTTAGGA-C
1 TTTGTGAATCTTAGAATC
*
26267146 TTT-TGCAAATCTGAGAATC
1 TTTGTG--AATCTTAGAATC
***
26267165 TTTACAAATCTTAGAATC
1 TTTGTGAATCTTAGAATC
* ***
26267183 ATTCAAAATCTTA-AATC
1 TTTGTGAATCTTAGAATC
* *
26267200 -TTG-GAACCTTTGCAAATC
1 TTTGTGAATCTTAG--AATC
* *
26267218 TTTATGAATCTTAAAATC
1 TTTGTGAATCTTAGAATC
*
26267236 TTTGAGAATCTT-GAATC
1 TTTGTGAATCTTAGAATC
26267253 ATATACAAAC
Statistics
Matches: 186, Mismatches: 44, Indels: 37
0.70 0.16 0.14
Matches are distributed among these distances:
15 5 0.03
16 9 0.05
17 31 0.17
18 124 0.67
19 11 0.06
20 6 0.03
ACGTcount: A:0.30, C:0.12, G:0.15, T:0.42
Consensus pattern (18 bp):
TTTGTGAATCTTAGAATC
Found at i:26267165 original size:52 final size:53
Alignment explanation
Indices: 26267021--26267166 Score: 138
Period size: 52 Copynumber: 2.8 Consensus size: 53
26267011 AATCTTGGAG
* * * * * *
26267021 TCTTTGTGAAT-TTTGGAACCTTTGTGAATCTTGAAATTTTTATGAATCTCAGGA
1 TCTTTGTGAATCTTAGGAA-CTTTATGAATC-TGAAAATCTTGTGAATCTCAGAA
*
26267075 TCTTTGTGAATCTTAGGAACTTTATGAATCTTAAAATCTTGTGAATCT-AGAA
1 TCTTTGTGAATCTTAGGAACTTTATGAATCTGAAAATCTTGTGAATCTCAGAA
* * *
26267127 TTTTTGTGAATTTTAGG-ACTTT-TGCAAATCTGAGAATCTT
1 TCTTTGTGAATCTTAGGAACTTTATG--AATCTGAAAATCTT
26267167 TACAAATCTT
Statistics
Matches: 78, Mismatches: 11, Indels: 8
0.80 0.11 0.08
Matches are distributed among these distances:
50 2 0.03
51 5 0.06
52 30 0.38
53 14 0.18
54 21 0.27
55 6 0.08
ACGTcount: A:0.28, C:0.11, G:0.17, T:0.44
Consensus pattern (53 bp):
TCTTTGTGAATCTTAGGAACTTTATGAATCTGAAAATCTTGTGAATCTCAGAA
Found at i:26267297 original size:37 final size:35
Alignment explanation
Indices: 26267245--26267353 Score: 110
Period size: 37 Copynumber: 3.0 Consensus size: 35
26267235 CTTTGAGAAT
* *
26267245 CTTGAATCATATACAAACTTTTGGAATTTTTGCAAAA
1 CTTGAATCTTTTACAAA-TTTT-GAATTTTTGCAAAA
** *
26267282 CTTGAATCTTTTACAAATTTTGAACCTTTGCGAAA
1 CTTGAATCTTTTACAAATTTTGAATTTTTGCAAAA
* *
26267317 CTTAAATCCTTTATACAAAATTTGAATCTTTTGCAAA
1 CTTGAAT-CTTT-TACAAATTTTGAAT-TTTTGCAAA
26267354 TTTTGAATAT
Statistics
Matches: 59, Mismatches: 10, Indels: 5
0.80 0.14 0.07
Matches are distributed among these distances:
35 17 0.29
36 8 0.14
37 27 0.46
38 7 0.12
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (35 bp):
CTTGAATCTTTTACAAATTTTGAATTTTTGCAAAA
Found at i:26267298 original size:18 final size:18
Alignment explanation
Indices: 26267268--26267384 Score: 78
Period size: 18 Copynumber: 6.6 Consensus size: 18
26267258 CAAACTTTTG
26267268 GAAT-TTTTGCAAAACTT
1 GAATCTTTTGCAAAACTT
* **
26267285 GAATCTTTTACAAATTTT
1 GAATCTTTTGCAAAACTT
* *
26267303 GAA-CCTTTGCGAAACTT
1 GAATCTTTTGCAAAACTT
* * *
26267320 AAATCCTTTATACAAAATTT
1 GAAT-CTTT-TGCAAAACTT
**
26267340 GAATCTTTTGCAAATTTT
1 GAATCTTTTGCAAAACTT
* *
26267358 GAAT-ATTTGTAAAACTT
1 GAATCTTTTGCAAAACTT
*
26267375 AAATCTTTTG
1 GAATCTTTTG
26267385 TGAATTTTTA
Statistics
Matches: 73, Mismatches: 22, Indels: 9
0.70 0.21 0.09
Matches are distributed among these distances:
17 27 0.37
18 29 0.40
19 7 0.10
20 10 0.14
ACGTcount: A:0.35, C:0.13, G:0.09, T:0.43
Consensus pattern (18 bp):
GAATCTTTTGCAAAACTT
Found at i:26267410 original size:36 final size:36
Alignment explanation
Indices: 26267341--26267439 Score: 110
Period size: 36 Copynumber: 2.8 Consensus size: 36
26267331 ACAAAATTTG
* *
26267341 AATCTTTTG-CAAATTTTGAATATTTGTAAAACTTA
1 AATCTTTTGTGAATTTTTGAATATTTGTAAAACTTA
* * * *
26267376 AATCTTTTGTGAATTTTTAAATCTTTGTGAAACTTG
1 AATCTTTTGTGAATTTTTGAATATTTGTAAAACTTA
* *
26267412 AATCATTTGATGAATTTTTGAATTTTTG
1 AATCTTTTG-TGAATTTTTGAATATTTG
26267440 AGTATTTGTT
Statistics
Matches: 53, Mismatches: 9, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
35 9 0.17
36 28 0.53
37 16 0.30
ACGTcount: A:0.31, C:0.07, G:0.12, T:0.49
Consensus pattern (36 bp):
AATCTTTTGTGAATTTTTGAATATTTGTAAAACTTA
Found at i:26267420 original size:18 final size:18
Alignment explanation
Indices: 26267362--26267425 Score: 58
Period size: 18 Copynumber: 3.5 Consensus size: 18
26267352 AATTTTGAAT
*
26267362 ATTTGTAAAACTTAAATC
1 ATTTGTGAAACTTAAATC
* **
26267380 TTTTGTGAATTTTTAAATC
1 ATTTGTGAA-ACTTAAATC
*
26267399 -TTTGTGAAACTTGAATC
1 ATTTGTGAAACTTAAATC
26267416 ATTTGATGAA
1 ATTTG-TGAA
26267426 TTTTTGAATT
Statistics
Matches: 36, Mismatches: 7, Indels: 5
0.75 0.15 0.10
Matches are distributed among these distances:
17 6 0.17
18 19 0.53
19 11 0.31
ACGTcount: A:0.34, C:0.08, G:0.12, T:0.45
Consensus pattern (18 bp):
ATTTGTGAAACTTAAATC
Found at i:26267886 original size:18 final size:17
Alignment explanation
Indices: 26267865--26267958 Score: 75
Period size: 18 Copynumber: 5.4 Consensus size: 17
26267855 TTTTGAGTTG
*
26267865 TAATTTGATTTTCAATCT
1 TAATTTGATTTT-AATTT
*
26267883 TAATTTTGATTTTGATTT
1 TAA-TTTGATTTTAATTT
*
26267901 TGATTTTGATTTTAATTT
1 T-AATTTGATTTTAATTT
26267919 TAATTTAGA-TTTAGATTT
1 TAATTT-GATTTTA-ATTT
* * *
26267937 T-ATTTAATATTAATTC
1 TAATTTGATTTTAATTT
26267953 TAATTT
1 TAATTT
26267959 TGTAGTCTAT
Statistics
Matches: 62, Mismatches: 8, Indels: 13
0.75 0.10 0.16
Matches are distributed among these distances:
16 5 0.08
17 19 0.31
18 28 0.45
19 10 0.16
ACGTcount: A:0.29, C:0.03, G:0.07, T:0.61
Consensus pattern (17 bp):
TAATTTGATTTTAATTT
Found at i:26267896 original size:6 final size:6
Alignment explanation
Indices: 26267885--26267941 Score: 71
Period size: 6 Copynumber: 9.7 Consensus size: 6
26267875 TTCAATCTTA
* * * *
26267885 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTA ATTTTA ATTTAG ATTTAG
1 ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG ATTTTG
26267933 ATTTT- ATTT
1 ATTTTG ATTT
26267942 AATATTAATT
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
5 4 0.09
6 43 0.91
ACGTcount: A:0.25, C:0.00, G:0.11, T:0.65
Consensus pattern (6 bp):
ATTTTG
Found at i:26270321 original size:17 final size:17
Alignment explanation
Indices: 26270269--26270328 Score: 66
Period size: 17 Copynumber: 3.5 Consensus size: 17
26270259 GTAAAATTTG
* * *
26270269 AAAATTCTAAACAAATA
1 AAAAATCTAAAAAAATT
*
26270286 AAAAATCCAAAAAAATT
1 AAAAATCTAAAAAAATT
* *
26270303 AAAAATCTAATAAATTT
1 AAAAATCTAAAAAAATT
26270320 AAAAATCTA
1 AAAAATCTA
26270329 TAACATTATT
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
17 36 1.00
ACGTcount: A:0.65, C:0.10, G:0.00, T:0.25
Consensus pattern (17 bp):
AAAAATCTAAAAAAATT
Found at i:26270342 original size:19 final size:18
Alignment explanation
Indices: 26270286--26270344 Score: 61
Period size: 17 Copynumber: 3.3 Consensus size: 18
26270276 TAAACAAATA
* *
26270286 AAAAATCCAA-AAAAATT
1 AAAAATCTAATAAATATT
26270303 AAAAATCTAATAAAT-TT
1 AAAAATCTAATAAATATT
26270320 AAAAATCT-ATAACATTATT
1 AAAAATCTAATAA-A-TATT
26270339 AAAAAT
1 AAAAAT
26270345 TTTTAAGAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
16 4 0.11
17 20 0.56
18 4 0.11
19 8 0.22
ACGTcount: A:0.63, C:0.08, G:0.00, T:0.29
Consensus pattern (18 bp):
AAAAATCTAATAAATATT
Found at i:26270731 original size:10 final size:10
Alignment explanation
Indices: 26270718--26270743 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
26270708 TAATTTTTCA
26270718 AAATTTATTT
1 AAATTTATTT
26270728 AAATTTATTT
1 AAATTTATTT
26270738 AAATTT
1 AAATTT
26270744 TTTCATTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (10 bp):
AAATTTATTT
Found at i:26270945 original size:11 final size:10
Alignment explanation
Indices: 26270930--26270996 Score: 52
Period size: 9 Copynumber: 7.0 Consensus size: 10
26270920 TTTATTAAAA
26270930 TTTTTATAAT
1 TTTTTATAAT
26270940 TGTTTTATAA-
1 T-TTTTATAAT
26270950 TTTTT-TAAT
1 TTTTTATAAT
* *
26270959 TTTTCA-AAA
1 TTTTTATAAT
* *
26270968 TTTTTAGATT
1 TTTTTATAAT
*
26270978 TTTTTAGAAT
1 TTTTTATAAT
26270988 TTTTT-TAAT
1 TTTTTATAAT
26270997 GTTGATTTGA
Statistics
Matches: 46, Mismatches: 7, Indels: 9
0.74 0.11 0.15
Matches are distributed among these distances:
8 3 0.07
9 18 0.39
10 17 0.37
11 8 0.17
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.66
Consensus pattern (10 bp):
TTTTTATAAT
Found at i:26270958 original size:8 final size:9
Alignment explanation
Indices: 26270928--26270996 Score: 50
Period size: 10 Copynumber: 7.3 Consensus size: 9
26270918 TTTTTATTAA
26270928 AATTTTTAT
1 AATTTTTAT
26270937 AATTGTTTTAT
1 AA-T-TTTTAT
26270948 AATTTTT-T
1 AATTTTTAT
*
26270956 AATTTTTCAA
1 AATTTTT-AT
*
26270966 AATTTTTAG
1 AATTTTTAT
* *
26270975 ATTTTTTTAG
1 A-ATTTTTAT
*
26270985 AATTTTTTT
1 AATTTTTAT
26270994 AAT
1 AAT
26270997 GTTGATTTGA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
8 8 0.16
9 16 0.33
10 17 0.35
11 8 0.16
ACGTcount: A:0.30, C:0.01, G:0.04, T:0.64
Consensus pattern (9 bp):
AATTTTTAT
Found at i:26271288 original size:2 final size:2
Alignment explanation
Indices: 26271283--26271317 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
26271273 TATATATATA
26271283 TG TG TG TG TG TG T- TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
26271318 AGAGAGAGAG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 31 0.97
ACGTcount: A:0.00, C:0.00, G:0.49, T:0.51
Consensus pattern (2 bp):
TG
Found at i:26275901 original size:21 final size:22
Alignment explanation
Indices: 26275872--26275912 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
26275862 ATCACTAAAG
* *
26275872 TAAAGATTTTGAAATTATGTTA
1 TAAAGATTTTAAAATCATGTTA
26275894 TAAA-ATTTTAAAATCATGT
1 TAAAGATTTTAAAATCATGT
26275913 CATATGATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 13 0.76
22 4 0.24
ACGTcount: A:0.44, C:0.02, G:0.10, T:0.44
Consensus pattern (22 bp):
TAAAGATTTTAAAATCATGTTA
Found at i:26276709 original size:21 final size:22
Alignment explanation
Indices: 26276669--26276709 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
26276659 GCTAGAAACG
*
26276669 TGAAAATTGTGTTCTATTTATT
1 TGAAAATTGTGATCTATTTATT
*
26276691 TGAAAATTTTGAT-TATTTA
1 TGAAAATTGTGATCTATTTA
26276710 AATGAACTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 6 0.35
22 11 0.65
ACGTcount: A:0.32, C:0.02, G:0.12, T:0.54
Consensus pattern (22 bp):
TGAAAATTGTGATCTATTTATT
Found at i:26283104 original size:212 final size:212
Alignment explanation
Indices: 26282727--26283112 Score: 508
Period size: 212 Copynumber: 1.8 Consensus size: 212
26282717 TATATCAAAA
* * *
26282727 CAAATTAATCTTACTCACAATTAATATCCAAAGACCCTCTCAATCTTCTCTAATCCTATGAAGCA
1 CAAATCAATCTTACCCACAATTAATACCCAAAGACCCTCTCAATCTTCTCTAATCCTATGAAGCA
* * * * * * *
26282792 TTCTCATCCTAAACAAACATATACTTATGTGCACTTTTTTAACATAAATAAACACATACCAATAT
66 TTCTCATCCCAAACAAACATATACTCATGTGCACTCTTTCAACACAAACAAACACATACCAATAA
* * *
26282857 GCACCTATGCACCATACCTATGTAGACCCTCTCAATCTCTTGTAATCTACTCCAACATACACACC
131 GAACCCATGCACCATACCTATGTAGACCCTCTCAATCTCCTGTAATCTACTCCAACATACACACC
26282922 TATAAAAATGTTAATCT
196 TATAAAAATGTTAATCT
* * * * * *
26282939 CAAATCAATCTTACCCACAATTAATACCCATAGATCCTTTCAATTTTCTTTAATCCTATAGAA-T
1 CAAATCAATCTTACCCACAATTAATACCCAAAGACCCTCTCAATCTTCTCTAATCCTAT-GAAGC
* **
26283003 ATTCTCATCCCAAACAAATACATAT-C-CATGTGCACTCTTTCAACACAAACAAACATATACGTA
65 ATTCTCATCCCAAAC-AA-ACATATACTCATGTGCACTCTTTCAACACAAACAAACACATACCAA
* *
26283066 TAAGAACCCATGCACCATACCTATGTGGACCTTCTCAATCTCCTGTA
128 TAAGAACCCATGCACCATACCTATGTAGACCCTCTCAATCTCCTGTA
26283113 GTCCATTCTA
Statistics
Matches: 147, Mismatches: 24, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
212 135 0.92
213 6 0.04
214 6 0.04
ACGTcount: A:0.36, C:0.27, G:0.06, T:0.31
Consensus pattern (212 bp):
CAAATCAATCTTACCCACAATTAATACCCAAAGACCCTCTCAATCTTCTCTAATCCTATGAAGCA
TTCTCATCCCAAACAAACATATACTCATGTGCACTCTTTCAACACAAACAAACACATACCAATAA
GAACCCATGCACCATACCTATGTAGACCCTCTCAATCTCCTGTAATCTACTCCAACATACACACC
TATAAAAATGTTAATCT
Found at i:26286940 original size:11 final size:12
Alignment explanation
Indices: 26286921--26286952 Score: 50
Period size: 10 Copynumber: 2.8 Consensus size: 12
26286911 GTATTTATAA
26286921 AATTAAAAAATT
1 AATTAAAAAATT
26286933 AA-T-AAAAATT
1 AATTAAAAAATT
26286943 AATTAAAAAA
1 AATTAAAAAA
26286953 ATTATATCAA
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
10 9 0.50
11 2 0.11
12 7 0.39
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (12 bp):
AATTAAAAAATT
Found at i:26287016 original size:24 final size:25
Alignment explanation
Indices: 26286972--26287031 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 25
26286962 AATACTTATT
* *
26286972 AATTAATTTATTAAATTATTAT-ATA
1 AATTAATTT-TTAAATAATTATAACA
26286997 AATTAATTTTTAAATAATTATAACA
1 AATTAATTTTTAAATAATTATAACA
26287022 AATTAATTTT
1 AATTAATTTT
26287032 AAAAACTTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 11 0.34
25 21 0.66
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (25 bp):
AATTAATTTTTAAATAATTATAACA
Found at i:26287074 original size:21 final size:21
Alignment explanation
Indices: 26287050--26287091 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
26287040 TGAATTTAAA
26287050 AAATAAAATAA-CAAAAAAATT
1 AAAT-AAATAATCAAAAAAATT
*
26287071 AAATAAATAATGAAAAAAATT
1 AAATAAATAATCAAAAAAATT
26287092 CTAAACTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 6 0.32
21 13 0.68
ACGTcount: A:0.74, C:0.02, G:0.02, T:0.21
Consensus pattern (21 bp):
AAATAAATAATCAAAAAAATT
Found at i:26287526 original size:54 final size:53
Alignment explanation
Indices: 26287452--26287576 Score: 139
Period size: 53 Copynumber: 2.4 Consensus size: 53
26287442 TGAAATAAGT
* * *
26287452 TTTTTAATTCA-TTA-TAATAAAAACATTATTTGATA-TATTATTATTTTTATTAA
1 TTTTTAATT-ATTTATTAATAAAAACATTATTTGATATTA-AAATA-TTTTAATAA
* **
26287505 TTTTTAATTATTTATTGATAAAATTATTATTTGATATTAAAATATTTTAATAA
1 TTTTTAATTATTTATTAATAAAAACATTATTTGATATTAAAATATTTTAATAA
*
26287558 TTTTTAATTTTTTATTAAT
1 TTTTTAATTATTTATTAAT
26287577 TTTATAAATG
Statistics
Matches: 61, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
52 1 0.02
53 37 0.61
54 21 0.34
55 2 0.03
ACGTcount: A:0.38, C:0.02, G:0.02, T:0.58
Consensus pattern (53 bp):
TTTTTAATTATTTATTAATAAAAACATTATTTGATATTAAAATATTTTAATAA
Found at i:26289455 original size:20 final size:20
Alignment explanation
Indices: 26289426--26289481 Score: 103
Period size: 20 Copynumber: 2.8 Consensus size: 20
26289416 AAACATACCC
*
26289426 TTTGTTTGCCATTTTGTCCA
1 TTTGTCTGCCATTTTGTCCA
26289446 TTTGTCTGCCATTTTGTCCA
1 TTTGTCTGCCATTTTGTCCA
26289466 TTTGTCTGCCATTTTG
1 TTTGTCTGCCATTTTG
26289482 AATTTACATA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.09, C:0.21, G:0.16, T:0.54
Consensus pattern (20 bp):
TTTGTCTGCCATTTTGTCCA
Found at i:26290104 original size:12 final size:12
Alignment explanation
Indices: 26290087--26290129 Score: 54
Period size: 12 Copynumber: 3.7 Consensus size: 12
26290077 AAACTCTCAT
26290087 ACAATAAAATAA
1 ACAATAAAATAA
*
26290099 ACAATAAAATCAT
1 ACAATAAAAT-AA
26290112 ACAAT-AAAT-A
1 ACAATAAAATAA
26290122 ACAATAAA
1 ACAATAAA
26290130 CAATATTCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
10 5 0.19
11 2 0.07
12 14 0.52
13 6 0.22
ACGTcount: A:0.70, C:0.12, G:0.00, T:0.19
Consensus pattern (12 bp):
ACAATAAAATAA
Found at i:26290111 original size:25 final size:23
Alignment explanation
Indices: 26290083--26290129 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
26290073 CTCAAAACTC
26290083 TCATACAATAAAATAAACAATAAAA
1 TCATACAAT-AAAT-AACAATAAAA
26290108 TCATACAATAAATAACAATAAA
1 TCATACAATAAATAACAATAAA
26290130 CAATATTCTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
23 9 0.41
24 4 0.18
25 9 0.41
ACGTcount: A:0.66, C:0.13, G:0.00, T:0.21
Consensus pattern (23 bp):
TCATACAATAAATAACAATAAAA
Found at i:26290117 original size:13 final size:13
Alignment explanation
Indices: 26290083--26290162 Score: 63
Period size: 13 Copynumber: 5.9 Consensus size: 13
26290073 CTCAAAACTC
26290083 TCATACAATAAAA
1 TCATACAATAAAA
*
26290096 T-AAACAATAAAA
1 TCATACAATAAAA
26290108 TCATACAATAAATA
1 TCATACAATAAA-A
* ***
26290122 ACAATAAACAATATTC
1 TC-AT--ACAATAAAA
26290138 TCATACAATAAAA
1 TCATACAATAAAA
*
26290151 TCATATAATAAA
1 TCATACAATAAA
26290163 CATTAAATAT
Statistics
Matches: 51, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
12 11 0.22
13 27 0.53
14 2 0.04
15 4 0.08
16 1 0.02
17 6 0.12
ACGTcount: A:0.61, C:0.14, G:0.00, T:0.25
Consensus pattern (13 bp):
TCATACAATAAAA
Found at i:26290129 original size:30 final size:29
Alignment explanation
Indices: 26290089--26290149 Score: 86
Period size: 30 Copynumber: 2.1 Consensus size: 29
26290079 ACTCTCATAC
26290089 AATAAAATAAACAATAAAATCATACAATA
1 AATAAAATAAACAATAAAATCATACAATA
***
26290118 AATAACAATAAACAATATTCTCATACAATA
1 AATAA-AATAAACAATAAAATCATACAATA
26290148 AA
1 AA
26290150 ATCATATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 5 0.18
30 23 0.82
ACGTcount: A:0.64, C:0.13, G:0.00, T:0.23
Consensus pattern (29 bp):
AATAAAATAAACAATAAAATCATACAATA
Found at i:26290535 original size:73 final size:73
Alignment explanation
Indices: 26290447--26290676 Score: 185
Period size: 73 Copynumber: 3.2 Consensus size: 73
26290437 CACATTAACT
26290447 TAACAATATTATTTTTCAATATTTTATTGATTTAGTTTTTTTAATATTTTGTCATTAATAGTGTT
1 TAACAATATTATTTTTCAATATTTTATTGATTTAGTTTTTTTAATATTTTGTCATTAATAGTGTT
26290512 ATGTCTTA
66 ATGTCTTA
* ** **** * * ***
26290520 TAACAATATTGTTTTT-AAT-TTCTTA-TGA-AAAGTTTAGGGACCA-ATATAGAATC-TGTCCC
1 TAACAATATTATTTTTCAATATT-TTATTGATTTAGTTTTTTTA--ATATTTTG--TCAT-TAAT
** *
26290579 A-CATTA--AC-T-
60 AGTGTTATGTCTTA
26290588 TAACAATATTATTTTTCAATATTTTATTGATTTAGTTTTTTTAATATTTTGTCATTAATAGTGTT
1 TAACAATATTATTTTTCAATATTTTATTGATTTAGTTTTTTTAATATTTTGTCATTAATAGTGTT
26290653 ATGTCTTA
66 ATGTCTTA
*
26290661 TAACAATATTGTTTTT
1 TAACAATATTATTTTT
26290677 AATTTCTTAT
Statistics
Matches: 109, Mismatches: 31, Indels: 34
0.63 0.18 0.20
Matches are distributed among these distances:
68 19 0.17
69 12 0.11
70 16 0.15
71 16 0.15
72 12 0.11
73 34 0.31
ACGTcount: A:0.31, C:0.08, G:0.09, T:0.52
Consensus pattern (73 bp):
TAACAATATTATTTTTCAATATTTTATTGATTTAGTTTTTTTAATATTTTGTCATTAATAGTGTT
ATGTCTTA
Found at i:26290661 original size:141 final size:141
Alignment explanation
Indices: 26290407--26290687 Score: 562
Period size: 141 Copynumber: 2.0 Consensus size: 141
26290397 AGAACTTTTC
26290407 AAAGTTTAGGGACCAATATAGAATCTGTCCCACATTAACTTAACAATATTATTTTTCAATATTTT
1 AAAGTTTAGGGACCAATATAGAATCTGTCCCACATTAACTTAACAATATTATTTTTCAATATTTT
26290472 ATTGATTTAGTTTTTTTAATATTTTGTCATTAATAGTGTTATGTCTTATAACAATATTGTTTTTA
66 ATTGATTTAGTTTTTTTAATATTTTGTCATTAATAGTGTTATGTCTTATAACAATATTGTTTTTA
26290537 ATTTCTTATGA
131 ATTTCTTATGA
26290548 AAAGTTTAGGGACCAATATAGAATCTGTCCCACATTAACTTAACAATATTATTTTTCAATATTTT
1 AAAGTTTAGGGACCAATATAGAATCTGTCCCACATTAACTTAACAATATTATTTTTCAATATTTT
26290613 ATTGATTTAGTTTTTTTAATATTTTGTCATTAATAGTGTTATGTCTTATAACAATATTGTTTTTA
66 ATTGATTTAGTTTTTTTAATATTTTGTCATTAATAGTGTTATGTCTTATAACAATATTGTTTTTA
26290678 ATTTCTTATG
131 ATTTCTTATG
26290688 CTTGGCAAAG
Statistics
Matches: 140, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 140 1.00
ACGTcount: A:0.32, C:0.10, G:0.10, T:0.48
Consensus pattern (141 bp):
AAAGTTTAGGGACCAATATAGAATCTGTCCCACATTAACTTAACAATATTATTTTTCAATATTTT
ATTGATTTAGTTTTTTTAATATTTTGTCATTAATAGTGTTATGTCTTATAACAATATTGTTTTTA
ATTTCTTATGA
Found at i:26293304 original size:17 final size:17
Alignment explanation
Indices: 26293284--26293339 Score: 58
Period size: 17 Copynumber: 3.3 Consensus size: 17
26293274 ACAAACATCT
*
26293284 AACAGTAACAACCCACC
1 AACAGTAACAAACCACC
* *
26293301 AACAGCAACAATCCACC
1 AACAGTAACAAACCACC
* * *
26293318 ATCAATAACAAACCTCC
1 AACAGTAACAAACCACC
26293335 AACAG
1 AACAG
26293340 GAGTAACCCA
Statistics
Matches: 30, Mismatches: 9, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 30 1.00
ACGTcount: A:0.48, C:0.38, G:0.05, T:0.09
Consensus pattern (17 bp):
AACAGTAACAAACCACC
Found at i:26293398 original size:33 final size:33
Alignment explanation
Indices: 26293361--26293425 Score: 87
Period size: 33 Copynumber: 2.0 Consensus size: 33
26293351 TAACAAGAGC
*
26293361 AACCTACAAT-AGCAACAACCCACCACCAACAAA
1 AACCTACAATGAG-AACAACCCACCAACAACAAA
* *
26293394 AACCTCCAATGAGAGCAACCCACCAACAACAA
1 AACCTACAATGAGAACAACCCACCAACAACAA
26293426 CAATAACAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
33 26 0.93
34 2 0.07
ACGTcount: A:0.49, C:0.38, G:0.06, T:0.06
Consensus pattern (33 bp):
AACCTACAATGAGAACAACCCACCAACAACAAA
Found at i:26297108 original size:10 final size:9
Alignment explanation
Indices: 26297073--26297106 Score: 52
Period size: 10 Copynumber: 3.8 Consensus size: 9
26297063 AAATAAATTA
26297073 TTTATTAA-
1 TTTATTAAT
26297081 TTTATTAAT
1 TTTATTAAT
26297090 TTTATTATAT
1 TTTATTA-AT
26297100 TTTATTA
1 TTTATTA
26297107 TAAAATAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
8 8 0.33
9 7 0.29
10 9 0.38
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (9 bp):
TTTATTAAT
Found at i:26303549 original size:23 final size:23
Alignment explanation
Indices: 26303490--26303559 Score: 61
Period size: 23 Copynumber: 3.0 Consensus size: 23
26303480 TTATTTAATT
** * *
26303490 TTTAAAAAAATTTAAAATATTAA
1 TTTAAAAACTTTTAATATTTTAA
*
26303513 TATTAAAATTCTTTTAATATTTTAA
1 T-TTAAAA-ACTTTTAATATTTTAA
26303538 TTTAAAAACTTTT-ATAATTTTA
1 TTTAAAAACTTTTAAT-ATTTTA
26303560 CCTAAATCAA
Statistics
Matches: 38, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
22 2 0.05
23 12 0.32
24 12 0.32
25 12 0.32
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (23 bp):
TTTAAAAACTTTTAATATTTTAA
Found at i:26303682 original size:16 final size:17
Alignment explanation
Indices: 26303661--26303700 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 17
26303651 ATTAAAACTA
26303661 AATCTTTTG-TTATTTT
1 AATCTTTTGATTATTTT
*
26303677 AATCTTTTGATTTTTTTT
1 AATCTTTTGA-TTATTTT
26303695 AATCTT
1 AATCTT
26303701 AAAAAATAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.43
18 12 0.57
ACGTcount: A:0.20, C:0.07, G:0.05, T:0.68
Consensus pattern (17 bp):
AATCTTTTGATTATTTT
Found at i:26304109 original size:13 final size:13
Alignment explanation
Indices: 26304093--26304122 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
26304083 AATATTTAAA
*
26304093 TATTAAATATTAT
1 TATTAAATATAAT
26304106 TATTAAATATAAT
1 TATTAAATATAAT
26304119 TATT
1 TATT
26304123 TTTTATTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (13 bp):
TATTAAATATAAT
Found at i:26305907 original size:31 final size:33
Alignment explanation
Indices: 26305837--26305905 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 33
26305827 ATTGATTTTA
*
26305837 ATTTTTATTTAATTTCTTTAAATTGATATAGAC
1 ATTTTTATTTAATTTCTTTAAAGTGATATAGAC
* *
26305870 ATTTTTATTTAA-TT-TTTCAAGTGATATGGA-
1 ATTTTTATTTAATTTCTTTAAAGTGATATAGAC
26305900 ATTTTT
1 ATTTTT
26305906 TAAAAATGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
30 6 0.18
31 13 0.39
32 2 0.06
33 12 0.36
ACGTcount: A:0.30, C:0.04, G:0.09, T:0.57
Consensus pattern (33 bp):
ATTTTTATTTAATTTCTTTAAAGTGATATAGAC
Found at i:26306098 original size:11 final size:11
Alignment explanation
Indices: 26306074--26306108 Score: 52
Period size: 11 Copynumber: 3.1 Consensus size: 11
26306064 TCTTTAATTA
*
26306074 TTTTATTTTACT
1 TTTTGTTTT-CT
26306086 TTTTGTTTTCT
1 TTTTGTTTTCT
26306097 TTTTGTTTTCT
1 TTTTGTTTTCT
26306108 T
1 T
26306109 CTTTATAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
11 14 0.64
12 8 0.36
ACGTcount: A:0.06, C:0.09, G:0.06, T:0.80
Consensus pattern (11 bp):
TTTTGTTTTCT
Found at i:26317642 original size:28 final size:29
Alignment explanation
Indices: 26317584--26317662 Score: 72
Period size: 28 Copynumber: 2.7 Consensus size: 29
26317574 ATAATCTTTT
* *
26317584 TTTATATAAAAATATTA-GTTAATATCTTAA
1 TTTA-ATAAAAA-ATTATATTAATATCATAA
26317614 TTTAATAAAAAATTATATTAATAT-ATAA
1 TTTAATAAAAAATTATATTAATATCATAA
* * * *
26317642 TTAAATTATAATTTATATTAA
1 TTTAATAAAAAATTATATTAA
26317663 AAATAAATAT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
28 24 0.57
29 14 0.33
30 4 0.10
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (29 bp):
TTTAATAAAAAATTATATTAATATCATAA
Found at i:26317835 original size:9 final size:9
Alignment explanation
Indices: 26317821--26317917 Score: 51
Period size: 9 Copynumber: 10.9 Consensus size: 9
26317811 TTGTCAATTG
26317821 TAATTTTTT
1 TAATTTTTT
26317830 TAATTTTTT
1 TAATTTTTT
* *
26317839 CAA--TATT
1 TAATTTTTT
26317846 TAATTTTTT
1 TAATTTTTT
26317855 TAATTTGTTAT
1 TAATTT-TT-T
* *
26317866 CAA-TTTTA
1 TAATTTTTT
26317874 T-ATTCTTTT
1 TAATT-TTTT
* *
26317883 CAACTTTTT
1 TAATTTTTT
**
26317892 TAGCTTTTT
1 TAATTTTTT
26317901 TAATTTCTTT
1 TAATTT-TTT
26317911 T-ATTTTT
1 TAATTTTT
26317918 AATAGAATGA
Statistics
Matches: 66, Mismatches: 14, Indels: 17
0.68 0.14 0.18
Matches are distributed among these distances:
7 6 0.09
8 3 0.05
9 44 0.67
10 10 0.15
11 3 0.05
ACGTcount: A:0.23, C:0.07, G:0.02, T:0.68
Consensus pattern (9 bp):
TAATTTTTT
Found at i:26317868 original size:27 final size:24
Alignment explanation
Indices: 26317814--26317892 Score: 86
Period size: 25 Copynumber: 3.0 Consensus size: 24
26317804 TTTTGCTTTG
*
26317814 TCAATTGTAATTTTTTTAATTTTT
1 TCAATTTTAATTTTTTTAATTTTT
26317838 TCAATATTTAATTTTTTTAATTTGTT
1 TCAAT-TTTAATTTTTTTAATTT-TT
*
26317864 ATCAATTTTATATTCTTTTCAACTTTTT
1 -TCAATTTTA-ATT-TTTTTAA-TTTTT
26317892 T
1 T
26317893 AGCTTTTTTA
Statistics
Matches: 47, Mismatches: 2, Indels: 9
0.81 0.03 0.16
Matches are distributed among these distances:
24 5 0.11
25 16 0.34
26 6 0.13
27 9 0.19
28 8 0.17
29 3 0.06
ACGTcount: A:0.25, C:0.08, G:0.03, T:0.65
Consensus pattern (24 bp):
TCAATTTTAATTTTTTTAATTTTT
Found at i:26319229 original size:33 final size:34
Alignment explanation
Indices: 26319179--26319246 Score: 79
Period size: 33 Copynumber: 2.0 Consensus size: 34
26319169 ACAAAAATTT
* *
26319179 TCATTCAACTAATATCATGCAA-TAATATAA-ATA
1 TCATGCAACTAATATCAT-AAACTAATATAATATA
26319212 TCATGCAA-TAATAATCATAAACTAATATAATATA
1 TCATGCAACTAAT-ATCATAAACTAATATAATATA
26319246 T
1 T
26319247 AAATTATCAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
32 6 0.20
33 20 0.67
34 4 0.13
ACGTcount: A:0.50, C:0.13, G:0.03, T:0.34
Consensus pattern (34 bp):
TCATGCAACTAATATCATAAACTAATATAATATA
Found at i:26319289 original size:19 final size:19
Alignment explanation
Indices: 26319245--26319289 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 19
26319235 AATATAATAT
* **
26319245 ATAAATTATCATGCAATTA
1 ATAAATAATCATGCAAAAA
*
26319264 ATTAATAATCATGCAAAAA
1 ATAAATAATCATGCAAAAA
26319283 ATAAATA
1 ATAAATA
26319290 TTTATAAACA
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.56, C:0.09, G:0.04, T:0.31
Consensus pattern (19 bp):
ATAAATAATCATGCAAAAA
Found at i:26319340 original size:18 final size:18
Alignment explanation
Indices: 26319317--26319359 Score: 50
Period size: 18 Copynumber: 2.4 Consensus size: 18
26319307 CAATTTTTTC
* *
26319317 ATAAAAAAGAGAAATAAA
1 ATAAAAAAGAAAAACAAA
*
26319335 ATAAAACAGAAAAACAAA
1 ATAAAAAAGAAAAACAAA
*
26319353 ACAAAAA
1 ATAAAAA
26319360 TAAAATGAAA
Statistics
Matches: 20, Mismatches: 5, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.79, C:0.07, G:0.07, T:0.07
Consensus pattern (18 bp):
ATAAAAAAGAAAAACAAA
Found at i:26320015 original size:37 final size:38
Alignment explanation
Indices: 26319971--26320045 Score: 93
Period size: 37 Copynumber: 1.9 Consensus size: 38
26319961 CTGACCTCCC
26319971 AAAAAACTCA-AAACTTTG-AAATT-AATCCCAGAAACCA
1 AAAAAACT-AGAAA-TTTGAAAATTCAATCCCAGAAACCA
26320008 AAAAAACTAGAAATTTGAAAATTCACAATCCCAGAAAC
1 AAAAAACTAGAAATTTGAAAATT--CAATCCCAGAAAC
26320046 TACAAGAATC
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
36 5 0.15
37 16 0.48
40 12 0.36
ACGTcount: A:0.55, C:0.20, G:0.07, T:0.19
Consensus pattern (38 bp):
AAAAAACTAGAAATTTGAAAATTCAATCCCAGAAACCA
Found at i:26320476 original size:14 final size:13
Alignment explanation
Indices: 26320452--26320518 Score: 52
Period size: 12 Copynumber: 5.4 Consensus size: 13
26320442 TGACTAATAA
26320452 TAAAAACTAAAAT
1 TAAAAACTAAAAT
26320465 TAAAACACTAAAA-
1 TAAAA-ACTAAAAT
* * *
26320478 TCAAAATTAAAAC
1 TAAAAACTAAAAT
*
26320491 T-AAAA-TCAAAT
1 TAAAAACTAAAAT
*
26320502 T-AAAACCAAAAT
1 TAAAAACTAAAAT
26320514 TAAAA
1 TAAAA
26320519 TTTTTGTTCT
Statistics
Matches: 44, Mismatches: 6, Indels: 8
0.76 0.10 0.14
Matches are distributed among these distances:
11 9 0.20
12 15 0.34
13 13 0.30
14 7 0.16
ACGTcount: A:0.67, C:0.12, G:0.00, T:0.21
Consensus pattern (13 bp):
TAAAAACTAAAAT
Found at i:26320494 original size:18 final size:18
Alignment explanation
Indices: 26320460--26320520 Score: 79
Period size: 17 Copynumber: 3.3 Consensus size: 18
26320450 AATAAAAACT
26320460 AAAATTAAAACACTAAAATC
1 AAAATT-AAA-ACTAAAATC
26320480 AAAATTAAAACTAAAATC
1 AAAATTAAAACTAAAATC
* *
26320498 -AAATTAAAACCAAAATT
1 AAAATTAAAACTAAAATC
26320515 AAAATT
1 AAAATT
26320521 TTTGTTCTTT
Statistics
Matches: 38, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
17 15 0.39
18 14 0.37
19 3 0.08
20 6 0.16
ACGTcount: A:0.66, C:0.11, G:0.00, T:0.23
Consensus pattern (18 bp):
AAAATTAAAACTAAAATC
Found at i:26328280 original size:30 final size:30
Alignment explanation
Indices: 26328246--26328302 Score: 105
Period size: 30 Copynumber: 1.9 Consensus size: 30
26328236 ACTCAATTGA
*
26328246 GATGAAAATAAATATTTAAATATTTAATTT
1 GATGAAAATAAATATTTAAAAATTTAATTT
26328276 GATGAAAATAAATATTTAAAAATTTAA
1 GATGAAAATAAATATTTAAAAATTTAA
26328303 CTAATTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.54, C:0.00, G:0.07, T:0.39
Consensus pattern (30 bp):
GATGAAAATAAATATTTAAAAATTTAATTT
Found at i:26328357 original size:29 final size:29
Alignment explanation
Indices: 26328250--26328361 Score: 102
Period size: 30 Copynumber: 3.8 Consensus size: 29
26328240 AATTGAGATG
* *
26328250 AAAAT-AAATATTTAAATATTTAATTTGATG
1 AAAATAAAATA-TTAAAAATTTAATTT-ATT
* *
26328280 AAAAT-AAATATTTAAAAATTTAACTAATT
1 AAAATAAAATA-TTAAAAATTTAATTTATT
* *
26328309 CAAAATAAAAAATAAAAAATTTAATTTATT
1 -AAAATAAAATATTAAAAATTTAATTTATT
* *
26328339 ATAATAAAATATTATAAATTTAA
1 AAAATAAAATATTAAAAATTTAA
26328362 ATGATTATTG
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
29 21 0.31
30 43 0.63
31 4 0.06
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.38
Consensus pattern (29 bp):
AAAATAAAATATTAAAAATTTAATTTATT
Found at i:26329365 original size:25 final size:27
Alignment explanation
Indices: 26329337--26329389 Score: 65
Period size: 25 Copynumber: 2.0 Consensus size: 27
26329327 AATTTACGTC
*
26329337 AAATTGCTTTTTGCT-TTTTT-TTAAA
1 AAATTGCTTTTTACTATTTTTGTTAAA
**
26329362 AAATTTTTTTTTACTATTTTTGTTAAA
1 AAATTGCTTTTTACTATTTTTGTTAAA
26329389 A
1 A
26329390 TTTTTTATAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 12 0.52
26 5 0.22
27 6 0.26
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.60
Consensus pattern (27 bp):
AAATTGCTTTTTACTATTTTTGTTAAA
Found at i:26334046 original size:17 final size:18
Alignment explanation
Indices: 26334024--26334063 Score: 55
Period size: 17 Copynumber: 2.3 Consensus size: 18
26334014 CTAGTTTATA
*
26334024 TCTATTTCTATGTCTA-G
1 TCTATTTCTATCTCTATG
*
26334041 TCTATTTTTATCTCTATG
1 TCTATTTCTATCTCTATG
26334059 TCTAT
1 TCTAT
26334064 CAAGTTGGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
17 14 0.70
18 6 0.30
ACGTcount: A:0.17, C:0.17, G:0.07, T:0.57
Consensus pattern (18 bp):
TCTATTTCTATCTCTATG
Found at i:26344863 original size:1 final size:1
Alignment explanation
Indices: 26344859--26344915 Score: 51
Period size: 1 Copynumber: 57.0 Consensus size: 1
26344849 GATGGGGCAT
* * * * * **
26344859 AAAAAAAATAAAAAAACAAAAACAAAAAAATAAAACAAGCAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26344916 GACATTCAAT
Statistics
Matches: 43, Mismatches: 13, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 43 1.00
ACGTcount: A:0.88, C:0.07, G:0.02, T:0.04
Consensus pattern (1 bp):
A
Found at i:26344885 original size:23 final size:23
Alignment explanation
Indices: 26344859--26344915 Score: 82
Period size: 22 Copynumber: 2.6 Consensus size: 23
26344849 GATGGGGCAT
26344859 AAAAAAAATAAAA-AAACAAAAA
1 AAAAAAAATAAAACAAACAAAAA
* *
26344881 CAAAAAAATAAAACAAGCAAAAA
1 AAAAAAAATAAAACAAACAAAAA
26344904 AAAAAAAA-AAAA
1 AAAAAAAATAAAA
26344916 GACATTCAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
22 16 0.52
23 15 0.48
ACGTcount: A:0.88, C:0.07, G:0.02, T:0.04
Consensus pattern (23 bp):
AAAAAAAATAAAACAAACAAAAA
Found at i:26346721 original size:41 final size:41
Alignment explanation
Indices: 26346617--26346712 Score: 140
Period size: 41 Copynumber: 2.3 Consensus size: 41
26346607 TTAAAGTTTT
* * **
26346617 AAAGTCTCTATTTAAGAAGAA-CTGTTCTCAATCAAGATTTC
1 AAAGCCTCTGTTTAAGAAGAACCAATT-TCAATCAAGATTTC
26346658 AAAGCCTCTGTTTAAGAAGAACCAATTTCAATCAAGATTTC
1 AAAGCCTCTGTTTAAGAAGAACCAATTTCAATCAAGATTTC
26346699 AAAGCCTCTGTTTA
1 AAAGCCTCTGTTTA
26346713 GAGGGAACCT
Statistics
Matches: 50, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
41 47 0.94
42 3 0.06
ACGTcount: A:0.36, C:0.19, G:0.12, T:0.32
Consensus pattern (41 bp):
AAAGCCTCTGTTTAAGAAGAACCAATTTCAATCAAGATTTC
Found at i:26346982 original size:21 final size:21
Alignment explanation
Indices: 26346953--26346993 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
26346943 TATCTCAGTC
* *
26346953 AATTCTGTAAGATCTCCGGGT
1 AATTATGTAAGACCTCCGGGT
26346974 AATTATGTAAGACCTCCGGG
1 AATTATGTAAGACCTCCGGG
26346994 CATGATTCTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (21 bp):
AATTATGTAAGACCTCCGGGT
Found at i:26347008 original size:23 final size:23
Alignment explanation
Indices: 26346954--26347033 Score: 85
Period size: 23 Copynumber: 3.6 Consensus size: 23
26346944 ATCTCAGTCA
* *
26346954 ATTCTGTAAGATCTCCGGG--TA
1 ATTCTGTAAGACCTCCGGGCATG
*
26346975 ATTATGTAAGACCTCCGGGCATG
1 ATTCTGTAAGACCTCCGGGCATG
* *
26346998 ATTCTGTAAGACTTCCAGGCATG
1 ATTCTGTAAGACCTCCGGGCATG
*
26347021 ATT-TCTAAGACCT
1 ATTCTGTAAGACCT
26347034 TTGGGCATAA
Statistics
Matches: 49, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
21 17 0.35
22 8 0.16
23 24 0.49
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.31
Consensus pattern (23 bp):
ATTCTGTAAGACCTCCGGGCATG
Found at i:26347209 original size:87 final size:86
Alignment explanation
Indices: 26347026--26347309 Score: 343
Period size: 87 Copynumber: 3.3 Consensus size: 86
26347016 GCATGATTTC
** * * * *
26347026 TAAGACCTTTGGGCATAATTTCGATTCTCGATGTTATCCCGATCGATTCTTTATCTTTCGACTTG
1 TAAGACCTCCGGGCATAATTTCGATTCTAG-TGTTGTCCCGATCGATTTTTTAT-TTTTGACTTG
* * **
26347091 TGGTGTTATCCTAGTTGATTCTG
64 TGGTGTTATCCCAATCAATTCTG
* * * * *
26347114 TAAGACCTCCGGGCATAAATTCGATTCGTAGTGTTGTCCTGATTGATTTTTTATTTTTGACTGGC
1 TAAGACCTCCGGGCATAATTTCGATTC-TAGTGTTGTCCCGATCGATTTTTTATTTTTGACTTGT
26347179 GGTGTTATCCCAATCAATTCTG
65 GGTGTTATCCCAATCAATTCTG
* *
26347201 TAAGACCTCTGGGCATAATTTCGATTCATGGTGTTGTCCCGATCGATTTTTTATTTTTGACTTGT
1 TAAGACCTCCGGGCATAATTTCGATTC-TAGTGTTGTCCCGATCGATTTTTTATTTTTGACTTGT
* *
26347266 GGTGTTATCCCAATCAATTTTA
65 GGTGTTATCCCAATCAATTCTG
* *
26347288 TAAGACCTCCGAGCATGATTTC
1 TAAGACCTCCGGGCATAATTTC
26347310 TAAGACCTCC
Statistics
Matches: 167, Mismatches: 28, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
87 122 0.73
88 43 0.26
89 2 0.01
ACGTcount: A:0.20, C:0.19, G:0.19, T:0.41
Consensus pattern (86 bp):
TAAGACCTCCGGGCATAATTTCGATTCTAGTGTTGTCCCGATCGATTTTTTATTTTTGACTTGTG
GTGTTATCCCAATCAATTCTG
Found at i:26347346 original size:109 final size:108
Alignment explanation
Indices: 26347201--26347405 Score: 311
Period size: 109 Copynumber: 1.9 Consensus size: 108
26347191 ATCAATTCTG
** * * **
26347201 TAAGACCTCTGGGCATAATTTCGATTCATGGTGTTGTCCCGATCGATTTTTTATTTTTGACTTGT
1 TAAGACCTCCAGGCATAAATTCGATTCACGGTGTTGTCCCGATCGATTTTTTATTTTTGACTTAC
*
26347266 GGTGTTATCCCAATCAATTTTATAAGACCTCCGAGCATGATTTC
66 GGTGTTATCCC-ATCAATTCTATAAGACCTCCGAGCATGATTTC
* *
26347310 TAAGACCTCCAGGCATAAATTCGATTCGCGGTGTTGTCCCGATTGATTTTTTATTTTTGACTTAC
1 TAAGACCTCCAGGCATAAATTCGATTCACGGTGTTGTCCCGATCGATTTTTTATTTTTGACTTAC
*
26347375 GGTGTTATCCCATCAATTCTGTAAGACCTCC
66 GGTGTTATCCCATCAATTCTATAAGACCTCC
26347406 AGGCATAATT
Statistics
Matches: 86, Mismatches: 10, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
108 18 0.21
109 68 0.79
ACGTcount: A:0.22, C:0.21, G:0.18, T:0.39
Consensus pattern (108 bp):
TAAGACCTCCAGGCATAAATTCGATTCACGGTGTTGTCCCGATCGATTTTTTATTTTTGACTTAC
GGTGTTATCCCATCAATTCTATAAGACCTCCGAGCATGATTTC
Found at i:26347457 original size:86 final size:87
Alignment explanation
Indices: 26347310--26347492 Score: 287
Period size: 86 Copynumber: 2.1 Consensus size: 87
26347300 GCATGATTTC
* * *
26347310 TAAGACCTCCAGGCATAAATTCGATTCGCGGTGTTGTCCCGATTGATTTTTTATTTTTGACTTAC
1 TAAGACCTCCAGGCATAAATTCGATTCGCGATGTTGTCCCGATCGATTTTTTATTTCTGACTTAC
26347375 GGTGTTATCCCA-TCAATTCTG
66 GGTGTTATCCCAGTCAATTCTG
* * * *
26347396 TAAGACCTCCAGGCATAATTTTGATTTGCGATGTTGTCCCGATCGATTTTTTATTTCTGACTTGC
1 TAAGACCTCCAGGCATAAATTCGATTCGCGATGTTGTCCCGATCGATTTTTTATTTCTGACTTAC
*
26347461 GGTGTTATTCCAGTCAATTCTG
66 GGTGTTATCCCAGTCAATTCTG
26347483 TAAGACCTCC
1 TAAGACCTCC
26347493 GGACATGATT
Statistics
Matches: 88, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
86 69 0.78
87 19 0.22
ACGTcount: A:0.21, C:0.21, G:0.19, T:0.39
Consensus pattern (87 bp):
TAAGACCTCCAGGCATAAATTCGATTCGCGATGTTGTCCCGATCGATTTTTTATTTCTGACTTAC
GGTGTTATCCCAGTCAATTCTG
Found at i:26347489 original size:195 final size:195
Alignment explanation
Indices: 26347114--26347520 Score: 622
Period size: 195 Copynumber: 2.1 Consensus size: 195
26347104 GTTGATTCTG
* * *
26347114 TAAGACCTCCGGGCATAAATTCGATTCGTAGTGTTGTCCTGATTGATTTTTTATTTTTGACTGGC
1 TAAGACCTCCGGGCATAAATTCGATTCGCAGTGTTGTCCCGATTGATTTTTTATTTTTGACTGAC
**
26347179 GGTGTTATCCCAATCAATTCTGTAAGACCTCTGGGCATAATTTCGATTCATGGTGTTGTCCCGAT
66 GGTGTTATCCCAATCAATTCTGTAAGACCTCCAGGCATAATTTCGATT-ATGGTGTTGTCCCGAT
* * *
26347244 CGATTTTTTATTTTTGACTTGTGGTGTTATCCCAATCAATTTTATAAGACCTCC-GAGCATGATT
130 CGATTTTTTATTTCTGACTTGCGGTGTTATCCCAATCAATTCTATAAGACCTCCGGA-CATGATT
26347308 TC
194 TC
* * *
26347310 TAAGACCTCCAGGCATAAATTCGATTCGCGGTGTTGTCCCGATTGATTTTTTATTTTTGACTTAC
1 TAAGACCTCCGGGCATAAATTCGATTCGCAGTGTTGTCCCGATTGATTTTTTATTTTTGACTGAC
*
26347375 GGTGTTATCCC-ATCAATTCTGTAAGACCTCCAGGCATAATTTTGATT-TGCGATGTTGTCCCGA
66 GGTGTTATCCCAATCAATTCTGTAAGACCTCCAGGCATAATTTCGATTATG-G-TGTTGTCCCGA
* * *
26347438 TCGATTTTTTATTTCTGACTTGCGGTGTTATTCCAGTCAATTCTGTAAGACCTCCGGACATGATT
129 TCGATTTTTTATTTCTGACTTGCGGTGTTATCCCAATCAATTCTATAAGACCTCCGGACATGATT
26347503 TC
194 TC
26347505 TAAGACCTCCGGGCAT
1 TAAGACCTCCGGGCAT
26347521 GATTCTGTAA
Statistics
Matches: 192, Mismatches: 16, Indels: 7
0.89 0.07 0.03
Matches are distributed among these distances:
193 2 0.01
194 1 0.01
195 117 0.61
196 72 0.38
ACGTcount: A:0.21, C:0.20, G:0.19, T:0.39
Consensus pattern (195 bp):
TAAGACCTCCGGGCATAAATTCGATTCGCAGTGTTGTCCCGATTGATTTTTTATTTTTGACTGAC
GGTGTTATCCCAATCAATTCTGTAAGACCTCCAGGCATAATTTCGATTATGGTGTTGTCCCGATC
GATTTTTTATTTCTGACTTGCGGTGTTATCCCAATCAATTCTATAAGACCTCCGGACATGATTTC
Found at i:26347535 original size:23 final size:22
Alignment explanation
Indices: 26347483--26347573 Score: 128
Period size: 22 Copynumber: 4.1 Consensus size: 22
26347473 GTCAATTCTG
*
26347483 TAAGACCTCCGGACATGATTTC
1 TAAGACCTCCGGGCATGATTTC
*
26347505 TAAGACCTCCGGGCATGATTCTG
1 TAAGACCTCCGGGCATGATT-TC
*
26347528 TAAGACCTCTGGGCATGATTTC
1 TAAGACCTCCGGGCATGATTTC
* *
26347550 TAAGACCTCCGGACATAATTTC
1 TAAGACCTCCGGGCATGATTTC
26347572 TA
1 TA
26347574 TTCGTGGTGT
Statistics
Matches: 61, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
22 41 0.67
23 20 0.33
ACGTcount: A:0.26, C:0.25, G:0.20, T:0.29
Consensus pattern (22 bp):
TAAGACCTCCGGGCATGATTTC
Found at i:26347661 original size:23 final size:23
Alignment explanation
Indices: 26347630--26347702 Score: 94
Period size: 23 Copynumber: 3.2 Consensus size: 23
26347620 TATCCCAGTC
*
26347630 AATTCTGTAAGACCTCCGGGCAT
1 AATTTTGTAAGACCTCCGGGCAT
26347653 AATTTTGTAAGACCTCCGGGCAT
1 AATTTTGTAAGACCTCCGGGCAT
* * * *
26347676 GA-TTTCTAAGACTTTCGGGCAT
1 AATTTTGTAAGACCTCCGGGCAT
26347698 AATTT
1 AATTT
26347703 CGATTCACGG
Statistics
Matches: 43, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
22 18 0.42
23 25 0.58
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (23 bp):
AATTTTGTAAGACCTCCGGGCAT
Found at i:26347665 original size:132 final size:132
Alignment explanation
Indices: 26347505--26347969 Score: 514
Period size: 132 Copynumber: 3.5 Consensus size: 132
26347495 ACATGATTTC
* *
26347505 TAAGACCTCCGGGCATGATTCTGTAAGACCTCTGGGCATGATTTCTAAGACCTCCGGACATAATT
1 TAAGACCTCCGGGCATAATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGACATAATT
* *
26347570 TCTATTCGTGGTGTTGTCCCGATCGATTTTTTATTTCTGACTTGCGGTGTTATCCCAGTCAATTC
66 TCGATTCGTGGTGTTGTCCCGATCGATTTTTTATTTCTGACTTGCGGTGTTATCCTAGTCAATTC
26347635 TG
131 TG
* * * *
26347637 TAAGACCTCCGGGCATAATTTTGTAAGACCTCCGGGCATGATTTCTAAGACTTTCGGGCATAATT
1 TAAGACCTCCGGGCATAATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGACATAATT
** *
26347702 TCGATTCACGGTGTTGTCCCGATCGATTTTTTATTTTTGACTTGCGGTGTTATCCTAGTCAATTC
66 TCGATTCGTGGTGTTGTCCCGATCGATTTTTTATTTCTGACTTGCGGTGTTATCCTAGTCAATTC
26347767 TG
131 TG
* * * * *
26347769 T--TATC-CCAGTC--AATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGGCATAATT
1 TAAGACCTCCGGGCATAATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGACATAATT
* * * *
26347829 TAGATTCACGATGTTGTCCTGATCGATCTGATCGATTTTTTATTTCTGACTTGCAGTGTTATCCT
66 TCGATT--CG-TGGTGT--TG-TC---CCGATCGATTTTTTATTTCTGACTTGCGGTGTTATCCT
*
26347894 AGTCAACTCTG
122 AGTCAATTCTG
* * * * * * * * *
26347905 TAAGACCTCTGTGCATGATT-TTTAAGACCTCTGGACA--ATTATGTAAGACCTCTGGACATGAT
1 TAAGACCTCCGGGCATAATTCTGTAAGACCTCCGGGCATGATT-TCTAAGACCTCCGGACATAAT
26347967 TTC
65 TTC
26347970 TAAGACCTCC
Statistics
Matches: 277, Mismatches: 41, Indels: 23
0.81 0.12 0.07
Matches are distributed among these distances:
127 51 0.18
129 5 0.02
130 6 0.02
132 124 0.45
133 2 0.01
136 46 0.17
138 5 0.02
139 21 0.08
140 14 0.05
141 3 0.01
ACGTcount: A:0.22, C:0.22, G:0.20, T:0.37
Consensus pattern (132 bp):
TAAGACCTCCGGGCATAATTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGACATAATT
TCGATTCGTGGTGTTGTCCCGATCGATTTTTTATTTCTGACTTGCGGTGTTATCCTAGTCAATTC
TG
Found at i:26347686 original size:154 final size:154
Alignment explanation
Indices: 26347396--26347687 Score: 464
Period size: 154 Copynumber: 1.9 Consensus size: 154
26347386 ATCAATTCTG
*
26347396 TAAGACCTCCAGGCATAATTTTGATTTGCGATGTTGTCCCGATCGATTTTTTATTTCTGACTTGC
1 TAAGACCTCCAGGCATAATTTTGATTCGCGATGTTGTCCCGATCGATTTTTTATTTCTGACTTGC
* *
26347461 GGTGTTATTCCAGTCAATTCTGTAAGACCTCCGGACATGATTTCTAAGACCTCCGGGCATGATTC
66 GGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGACATAATTTCTAAGACCTCCGGGCATGATTC
*
26347526 TGTAAGACCTCTGGGCATGATTTC
131 TCTAAGACCTCTGGGCATGATTTC
* *
26347550 TAAGACCTCC-GGACATAATTTCT-ATTCGTGGTGTTGTCCCGATCGATTTTTTATTTCTGACTT
1 TAAGACCTCCAGG-CATAATTT-TGATTCGCGATGTTGTCCCGATCGATTTTTTATTTCTGACTT
* *
26347613 GCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGGCATAATTTTGTAAGACCTCCGGGCATGA
64 GCGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGACATAA-TTTCTAAGACCTCCGGGCATGA
26347678 TT-TCTAAGAC
128 TTCTCTAAGAC
26347688 TTTCGGGCAT
Statistics
Matches: 127, Mismatches: 8, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
153 2 0.02
154 101 0.80
155 24 0.19
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.36
Consensus pattern (154 bp):
TAAGACCTCCAGGCATAATTTTGATTCGCGATGTTGTCCCGATCGATTTTTTATTTCTGACTTGC
GGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGACATAATTTCTAAGACCTCCGGGCATGATTC
TCTAAGACCTCTGGGCATGATTTC
Found at i:26347694 original size:22 final size:22
Alignment explanation
Indices: 26347637--26347703 Score: 89
Period size: 22 Copynumber: 3.0 Consensus size: 22
26347627 GTCAATTCTG
*
26347637 TAAGACCTCCGGGCATAATTTTG
1 TAAGACCTCCGGGCATAA-TTTC
*
26347660 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGGGCATAATTTC
* *
26347682 TAAGACTTTCGGGCATAATTTC
1 TAAGACCTCCGGGCATAATTTC
26347704 GATTCACGGT
Statistics
Matches: 39, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
22 22 0.56
23 17 0.44
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.31
Consensus pattern (22 bp):
TAAGACCTCCGGGCATAATTTC
Found at i:26347772 original size:18 final size:18
Alignment explanation
Indices: 26347749--26347787 Score: 69
Period size: 18 Copynumber: 2.2 Consensus size: 18
26347739 TGACTTGCGG
*
26347749 TGTTATCCTAGTCAATTC
1 TGTTATCCCAGTCAATTC
26347767 TGTTATCCCAGTCAATTC
1 TGTTATCCCAGTCAATTC
26347785 TGT
1 TGT
26347788 AAGACCTCCG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.21, C:0.23, G:0.13, T:0.44
Consensus pattern (18 bp):
TGTTATCCCAGTCAATTC
Found at i:26347812 original size:22 final size:22
Alignment explanation
Indices: 26347787--26347829 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
26347777 GTCAATTCTG
*
26347787 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGGGCATAATTTC
26347809 TAAGACCTCCGGGCATAATTT
1 TAAGACCTCCGGGCATAATTT
26347830 AGATTCACGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.28
Consensus pattern (22 bp):
TAAGACCTCCGGGCATAATTTC
Found at i:26347933 original size:22 final size:22
Alignment explanation
Indices: 26347905--26347978 Score: 91
Period size: 22 Copynumber: 3.4 Consensus size: 22
26347895 GTCAACTCTG
*
26347905 TAAGACCTCTGTG-CATGATTTT
1 TAAGACCTCTG-GACATGATTTC
*
26347927 TAAGACCTCTGGACA--ATTATG
1 TAAGACCTCTGGACATGATT-TC
26347948 TAAGACCTCTGGACATGATTTC
1 TAAGACCTCTGGACATGATTTC
26347970 TAAGACCTC
1 TAAGACCTC
26347979 CGGGCATAAT
Statistics
Matches: 46, Mismatches: 2, Indels: 8
0.82 0.04 0.14
Matches are distributed among these distances:
20 3 0.07
21 17 0.37
22 23 0.50
23 3 0.07
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (22 bp):
TAAGACCTCTGGACATGATTTC
Found at i:26347990 original size:22 final size:22
Alignment explanation
Indices: 26347905--26347991 Score: 61
Period size: 22 Copynumber: 4.0 Consensus size: 22
26347895 GTCAACTCTG
* * * *
26347905 TAAGACCTCTGTGCATGATTTT
1 TAAGACCTCCGGGCATAATTTC
* * *
26347927 TAAGACCT-CTGG-ACAATTATG
1 TAAGACCTCCGGGCATAATT-TC
* * *
26347948 TAAGACCTCTGGACATGATTTC
1 TAAGACCTCCGGGCATAATTTC
26347970 TAAGACCTCCGGGCATAATTTC
1 TAAGACCTCCGGGCATAATTTC
26347992 GATTGGCTAT
Statistics
Matches: 47, Mismatches: 15, Indels: 6
0.69 0.22 0.09
Matches are distributed among these distances:
20 4 0.09
21 10 0.21
22 29 0.62
23 4 0.09
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (22 bp):
TAAGACCTCCGGGCATAATTTC
Found at i:26348131 original size:109 final size:107
Alignment explanation
Indices: 26347946--26348536 Score: 510
Period size: 109 Copynumber: 5.4 Consensus size: 107
26347936 TGGACAATTA
* * * * *
26347946 TGTAAGACCTCTGGACATGATTTCTAAGACCTCCGGGCAT-AATTTCGATTGGCTATGTTGTCCC
1 TGTAAGACCTCCGGACATGATTTCTAAGACCTCCGGGCATAAATTT-GATTCGCGATGTTATCCT
* * *
26348010 GATCGATTTTTTATTTTTGACTTACGGTGTTATCCCAGTCAATTC
65 GATC-ATTTTTTATTTTTGACTTATGGT-TTATCCCAATCGATTC
** * * *
26348055 TGTAAGACCTCCGGGTATGATTTTTAAGACCTCCAGCCAT-AATTTCGATTCGCGATGTTATCCT
1 TGTAAGACCTCCGGACATGATTTCTAAGACCTCCGGGCATAAATTT-GATTCGCGATGTTATCCT
* * * * *
26348119 GATCATTTTTTTATCTTTTGACTTGTGGCATTATCCTAGTTGATTC
65 GATCA-TTTTTTAT-TTTTGACTTATGG-TTTATCCCAATCGATTC
* ** ** * *
26348165 TGTAAGACCTTCGAGTA-A-GATTTCTAAGATTTTTGGGCATAAATTTGATTAGCGGTGTTATCC
1 TGTAAGACCTCCG-G-ACATGATTTCTAAGACCTCCGGGCATAAATTTGATTCGCGATGTTATCC
** **
26348228 CAATCGATTCCTTATCTTTTGACTTATGGTTTATCCCAATCGATTC
64 TGATC-ATTTTTTAT-TTTTGACTTATGGTTTATCCCAATCGATTC
* * ** * *
26348274 TGTAAGATCTCTGGACATGATTTCTAAGATTTTCGGGCATAAATTTGATTCGCGGTGTTATCCTG
1 TGTAAGACCTCCGGACATGATTTCTAAGACCTCCGGGCATAAATTTGATTCGCGATGTTATCCTG
* * * *
26348339 ATCAATTTTTTATTTTTCAACTTGTGATTTATCCCAATTGATTC
66 ATC-ATTTTTTATTTTT-GACTTATGGTTTATCCCAATCGATTC
* *
26348383 TGTAAGACCTCCGGACATGATTTGTAAGACTTCCGGGCATAAATTTGATTCGCTG-TGTTAT-CT
1 TGTAAGACCTCCGGACATGATTTCTAAGACCTCCGGGCATAAATTTGATTCGC-GATGTTATCCT
* * * * * *
26348446 CAATTGATTTTTTATTTTTCAACTTACGATTTATCCCAATTGATTC
65 -GA-TCATTTTTTATTTTT-GACTTATGGTTTATCCCAATCGATTC
* * * * * *
26348492 TATAAGACCTTCGGGCTTGATTTGTAAGACCTCCGGACATAAATT
1 TGTAAGACCTCCGGACATGATTTCTAAGACCTCCGGGCATAAATT
26348537 CAAGCTGTGA
Statistics
Matches: 404, Mismatches: 65, Indels: 26
0.82 0.13 0.05
Matches are distributed among these distances:
107 1 0.00
108 9 0.02
109 296 0.73
110 90 0.22
111 8 0.02
ACGTcount: A:0.24, C:0.19, G:0.17, T:0.40
Consensus pattern (107 bp):
TGTAAGACCTCCGGACATGATTTCTAAGACCTCCGGGCATAAATTTGATTCGCGATGTTATCCTG
ATCATTTTTTATTTTTGACTTATGGTTTATCCCAATCGATTC
Found at i:26348326 original size:219 final size:217
Alignment explanation
Indices: 26347946--26348525 Score: 632
Period size: 219 Copynumber: 2.7 Consensus size: 217
26347936 TGGACAATTA
* * * ** *
26347946 TGTAAGACCTCTGGACATGATTTCTAAGACCTCCGGGCAT-AATTTCGATTGGCTATGTTGTCCC
1 TGTAAGACCTCCGGACATGATTTCTAAGACTTCCGGGCATAAATTT-GATTAGCGGTGTTATCCC
* * * **
26348010 GATCGATTTTTTATTTTTGACTTACGGTGTTATCCCAGTCAATTCTGTAAGACCTCCGGGTATGA
65 AATCGATTTTTTATTTTTGACTTACGGT-TTATCCCAATCGATTCTGTAAGACCTCCGGACATGA
* * *
26348075 TTTTTAAGACCTCCAGCCATAATTTCGATTCGCGATGTTATCCTGATCATTTTTTTATCTTTT-G
129 TTTCTAAGACCTCCAGCCATAATTTCGATTCGCGATGTTATCCTGATCAATTTTTTAT-TTTTCA
* *
26348139 ACTTGTGGCA-TTATCCTAGTTGATTC
193 ACTTGT-G-ATTTATCCCAATTGATTC
* * **
26348165 TGTAAGACCTTCGAGTA-A-GATTTCTAAGATTTTTGGGCATAAATTTGATTAGCGGTGTTATCC
1 TGTAAGACCTCCG-G-ACATGATTTCTAAGACTTCCGGGCATAAATTTGATTAGCGGTGTTATCC
** * * *
26348228 CAATCGATTCCTTATCTTTTGACTTATGGTTTATCCCAATCGATTCTGTAAGATCTCTGGACATG
64 CAATCGATTTTTTAT-TTTTGACTTACGGTTTATCCCAATCGATTCTGTAAGACCTCCGGACATG
** * * * *
26348293 ATTTCTAAGATTTTCGGGCATAAATTT-GATTCGCGGTGTTATCCTGATCAATTTTTTATTTTTC
128 ATTTCTAAGACCTCCAGCCAT-AATTTCGATTCGCGATGTTATCCTGATCAATTTTTTATTTTTC
26348357 AACTTGTGATTTATCCCAATTGATTC
192 AACTTGTGATTTATCCCAATTGATTC
* * * *
26348383 TGTAAGACCTCCGGACATGATTTGTAAGACTTCCGGGCATAAATTTGATTCGCTGTGTTATCTCA
1 TGTAAGACCTCCGGACATGATTTCTAAGACTTCCGGGCATAAATTTGATTAGCGGTGTTATCCCA
* * * * * * * *
26348448 ATTGATTTTTTATTTTTCAACTTACGATTTATCCCAATTGATTCTATAAGACCTTCGGGCTTGAT
66 ATCGATTTTTTATTTTT-GACTTACGGTTTATCCCAATCGATTCTGTAAGACCTCCGGACATGAT
*
26348513 TTGTAAGACCTCC
130 TTCTAAGACCTCC
26348526 GGACATAAAT
Statistics
Matches: 295, Mismatches: 56, Indels: 21
0.79 0.15 0.06
Matches are distributed among these distances:
216 1 0.00
217 7 0.02
218 127 0.43
219 134 0.45
220 25 0.08
221 1 0.00
ACGTcount: A:0.23, C:0.19, G:0.17, T:0.41
Consensus pattern (217 bp):
TGTAAGACCTCCGGACATGATTTCTAAGACTTCCGGGCATAAATTTGATTAGCGGTGTTATCCCA
ATCGATTTTTTATTTTTGACTTACGGTTTATCCCAATCGATTCTGTAAGACCTCCGGACATGATT
TCTAAGACCTCCAGCCATAATTTCGATTCGCGATGTTATCCTGATCAATTTTTTATTTTTCAACT
TGTGATTTATCCCAATTGATTC
Found at i:26348753 original size:12 final size:12
Alignment explanation
Indices: 26348733--26348764 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26348723 TCTACTATTT
*
26348733 TAATTTTAATAA
1 TAATATTAATAA
26348745 TAATATTAATAA
1 TAATATTAATAA
26348757 TAATATTA
1 TAATATTA
26348765 TTAAAAAATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (12 bp):
TAATATTAATAA
Found at i:26348814 original size:22 final size:21
Alignment explanation
Indices: 26348789--26348836 Score: 60
Period size: 22 Copynumber: 2.2 Consensus size: 21
26348779 TTAATTATAT
*
26348789 AAAATATAAAAAAAAAAATGAA
1 AAAAAATAAAAAAAAAAA-GAA
* *
26348811 AAAAAATAATAAAAAAGAGAA
1 AAAAAATAAAAAAAAAAAGAA
26348832 AAAAA
1 AAAAA
26348837 GGAAAAACAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
21 8 0.35
22 15 0.65
ACGTcount: A:0.83, C:0.00, G:0.06, T:0.10
Consensus pattern (21 bp):
AAAAAATAAAAAAAAAAAGAA
Found at i:26350384 original size:33 final size:33
Alignment explanation
Indices: 26350347--26350419 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
26350337 TTTTAAAACT
26350347 CCTAAAAATAAAAAATCCCTTAAATCCAAACCC
1 CCTAAAAATAAAAAATCCCTTAAATCCAAACCC
**
26350380 CCTAAAAATCCAAAATCCCTTAAATCCAAACCC
1 CCTAAAAATAAAAAATCCCTTAAATCCAAACCC
26350413 CCTAAAA
1 CCTAAAA
26350420 TTCGAAACCC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.49, C:0.33, G:0.00, T:0.18
Consensus pattern (33 bp):
CCTAAAAATAAAAAATCCCTTAAATCCAAACCC
Found at i:26350390 original size:17 final size:16
Alignment explanation
Indices: 26350363--26350458 Score: 97
Period size: 16 Copynumber: 5.9 Consensus size: 16
26350353 AATAAAAAAT
*
26350363 CCCTTAAATCCAAACC
1 CCCTAAAATCCAAACC
**
26350379 CCCTAAAAATCCAAAAT
1 CCCT-AAAATCCAAACC
*
26350396 CCCTTAAATCCAAACC
1 CCCTAAAATCCAAACC
*
26350412 CCCTAAAATTCGAAA-C
1 CCCTAAAA-TCCAAACC
26350428 CCCTAAAATCCAAAACC
1 CCCTAAAATCC-AAACC
26350445 TCCC-AAAATCCAAA
1 -CCCTAAAATCCAAA
26350459 ATCCTAAACT
Statistics
Matches: 66, Mismatches: 9, Indels: 10
0.78 0.11 0.12
Matches are distributed among these distances:
15 2 0.03
16 35 0.53
17 26 0.39
18 3 0.05
ACGTcount: A:0.45, C:0.38, G:0.01, T:0.17
Consensus pattern (16 bp):
CCCTAAAATCCAAACC
Found at i:26350444 original size:33 final size:32
Alignment explanation
Indices: 26350358--26350459 Score: 125
Period size: 33 Copynumber: 3.1 Consensus size: 32
26350348 CTAAAAATAA
*
26350358 AAAATCCCTTAAATCCAAACCCCCTAAAAATCC
1 AAAACCCCTTAAATCCAAACCCCCT-AAAATCC
* *
26350391 AAAATCCCTTAAATCCAAACCCCCTAAAATTC
1 AAAACCCCTTAAATCCAAACCCCCTAAAATCC
* *
26350423 GAAACCCCTAAAATCCAAAACCTCCC-AAAATCC
1 AAAACCCCTTAAATCC-AAACC-CCCTAAAATCC
26350456 AAAA
1 AAAA
26350460 TCCTAAACTT
Statistics
Matches: 61, Mismatches: 6, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
32 19 0.31
33 39 0.64
34 3 0.05
ACGTcount: A:0.47, C:0.35, G:0.01, T:0.17
Consensus pattern (32 bp):
AAAACCCCTTAAATCCAAACCCCCTAAAATCC
Done.