Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 158 of 195
Found at i:26354445 original size:140 final size:141
Alignment explanation
Indices: 26354193--26354471 Score: 524
Period size: 140 Copynumber: 2.0 Consensus size: 141
26354183 GTAAAATGAG
26354193 ATGCAATTTAAGAGTTGGATTCTTAAATATAATGAGACCACCCCGACTCTCCAACATCTAGGCAG
1 ATGCAATTTAAGAGTTGGATTCTTAAATATAATGAGACCACCCCGACTCTCCAACATCTAGGCAG
*
26354258 AGCTTAAGTGCGACTGTTTATATTTAAGATCCCAATTTTATTATACTTTTT-TTTATTAATCTTA
66 AGCTTAAGTGCGACTGTTTATATTTAAAATCCCAATTTTATTATACTTTTTATTTATTAATCTTA
26354322 TTATTAATAAA
131 TTATTAATAAA
26354333 ATGCAATTTAAGAGTTGGATTCTTAAATATAATGAGACCACCCCGACTCTCCAACATCTAGGCAG
1 ATGCAATTTAAGAGTTGGATTCTTAAATATAATGAGACCACCCCGACTCTCCAACATCTAGGCAG
* *
26354398 AGCTTAGGTGCGACTGTTTATATTTAAAATCTCAATTTTATTATACTTTTTATTTATTAATCTTA
66 AGCTTAAGTGCGACTGTTTATATTTAAAATCCCAATTTTATTATACTTTTTATTTATTAATCTTA
26354463 TTATTAATA
131 TTATTAATA
26354472 TGAATTATGA
Statistics
Matches: 135, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
140 113 0.84
141 22 0.16
ACGTcount: A:0.33, C:0.16, G:0.12, T:0.39
Consensus pattern (141 bp):
ATGCAATTTAAGAGTTGGATTCTTAAATATAATGAGACCACCCCGACTCTCCAACATCTAGGCAG
AGCTTAAGTGCGACTGTTTATATTTAAAATCCCAATTTTATTATACTTTTTATTTATTAATCTTA
TTATTAATAAA
Found at i:26354972 original size:18 final size:16
Alignment explanation
Indices: 26354939--26354969 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
26354929 CATTTTAATA
26354939 TATTTTAATTATTATT
1 TATTTTAATTATTATT
26354955 TATTTTAATT-TTATT
1 TATTTTAATTATTATT
26354970 ATTATTAAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (16 bp):
TATTTTAATTATTATT
Found at i:26355172 original size:17 final size:17
Alignment explanation
Indices: 26355150--26355211 Score: 63
Period size: 17 Copynumber: 3.4 Consensus size: 17
26355140 CGATGGTCCG
26355150 GGCGGTCTGACCGGTTC
1 GGCGGTCTGACCGGTTC
26355167 GGCGGT-TGGATCGGCGGTTC
1 GGCGGTCT-GA-C--CGGTTC
*
26355187 GGGCGATCTGACCGGTTC
1 -GGCGGTCTGACCGGTTC
26355205 GGCGGTC
1 GGCGGTC
26355212 GATAGGCGGT
Statistics
Matches: 37, Mismatches: 2, Indels: 12
0.73 0.04 0.24
Matches are distributed among these distances:
16 1 0.03
17 14 0.38
18 7 0.19
20 7 0.19
21 7 0.19
22 1 0.03
ACGTcount: A:0.06, C:0.26, G:0.45, T:0.23
Consensus pattern (17 bp):
GGCGGTCTGACCGGTTC
Found at i:26355197 original size:38 final size:37
Alignment explanation
Indices: 26355148--26355224 Score: 118
Period size: 38 Copynumber: 2.1 Consensus size: 37
26355138 AACGATGGTC
* * *
26355148 CGGGCGGTCTGACCGGTTCGGCGGTTGGATCGGCGGTT
1 CGGGCGATCTGACCGGTTCGGCGG-TCGATAGGCGGTT
26355186 CGGGCGATCTGACCGGTTCGGCGGTCGATAGGCGGTT
1 CGGGCGATCTGACCGGTTCGGCGGTCGATAGGCGGTT
26355223 CG
1 CG
26355225 TATGAACCGG
Statistics
Matches: 36, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
37 13 0.36
38 23 0.64
ACGTcount: A:0.08, C:0.25, G:0.45, T:0.22
Consensus pattern (37 bp):
CGGGCGATCTGACCGGTTCGGCGGTCGATAGGCGGTT
Found at i:26355783 original size:37 final size:37
Alignment explanation
Indices: 26355733--26355806 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
26355723 TCCTCGCCGT
*
26355733 AGGCGAGGACTATGTTATTTTTTTGGTTTTTGTTTTC
1 AGGCGAAGACTATGTTATTTTTTTGGTTTTTGTTTTC
26355770 AGGCGAAGACTATGTTATTTTTTTGGTTTTTGTTTTC
1 AGGCGAAGACTATGTTATTTTTTTGGTTTTTGTTTTC
26355807 GTTTTTTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.15, C:0.08, G:0.23, T:0.54
Consensus pattern (37 bp):
AGGCGAAGACTATGTTATTTTTTTGGTTTTTGTTTTC
Found at i:26355848 original size:10 final size:10
Alignment explanation
Indices: 26355833--26355857 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
26355823 GTGGCGGTTC
26355833 TGTTTATGGT
1 TGTTTATGGT
26355843 TGTTTATGGT
1 TGTTTATGGT
26355853 TGTTT
1 TGTTT
26355858 TGGGTTGGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.08, C:0.00, G:0.28, T:0.64
Consensus pattern (10 bp):
TGTTTATGGT
Found at i:26356243 original size:21 final size:22
Alignment explanation
Indices: 26356200--26356254 Score: 67
Period size: 22 Copynumber: 2.5 Consensus size: 22
26356190 GACTTCTTTC
*
26356200 TTTTTTTTTGTTTGTTTACTTG
1 TTTTTTTTTGTTTCTTTACTTG
* *
26356222 TTTTTTTTTTTTTCTTT-TTTG
1 TTTTTTTTTGTTTCTTTACTTG
*
26356243 TTTTGTTTTGTT
1 TTTTTTTTTGTT
26356255 AAATATTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
21 13 0.46
22 15 0.54
ACGTcount: A:0.02, C:0.04, G:0.11, T:0.84
Consensus pattern (22 bp):
TTTTTTTTTGTTTCTTTACTTG
Found at i:26357417 original size:14 final size:14
Alignment explanation
Indices: 26357398--26357426 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
26357388 GACCACCACC
26357398 GACCCCGTCCCTTT
1 GACCCCGTCCCTTT
26357412 GACCCCGTCCCTTT
1 GACCCCGTCCCTTT
26357426 G
1 G
26357427 CCTTGTCCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.07, C:0.48, G:0.17, T:0.28
Consensus pattern (14 bp):
GACCCCGTCCCTTT
Found at i:26363871 original size:1 final size:1
Alignment explanation
Indices: 26363867--26363932 Score: 51
Period size: 1 Copynumber: 66.0 Consensus size: 1
26363857 GATGGGGCAT
* * * * * ** * *
26363867 AAAAAAATAAAAAAACAAAAACAAAAAAACAAAACAAGTAAAAAAAAAAAGAAAAAAAAACAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
26363932 A
1 A
26363933 GGACATATTC
Statistics
Matches: 48, Mismatches: 17, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
1 48 1.00
ACGTcount: A:0.86, C:0.08, G:0.03, T:0.03
Consensus pattern (1 bp):
A
Found at i:26363892 original size:13 final size:12
Alignment explanation
Indices: 26363867--26363932 Score: 64
Period size: 12 Copynumber: 5.3 Consensus size: 12
26363857 GATGGGGCAT
*
26363867 AAAAAAATAA-A
1 AAAAAAAAAACA
*
26363878 AAAACAAAAACA
1 AAAAAAAAAACA
26363890 AAAAAACAAAACA
1 AAAAAA-AAAACA
26363903 AGTAAAAAAAAA-A
1 A--AAAAAAAAACA
26363916 AGAAAAAAAAACA
1 A-AAAAAAAAACA
26363929 AAAA
1 AAAA
26363933 GGACATATTC
Statistics
Matches: 46, Mismatches: 4, Indels: 9
0.78 0.07 0.15
Matches are distributed among these distances:
11 8 0.17
12 18 0.39
13 11 0.24
14 4 0.09
15 5 0.11
ACGTcount: A:0.86, C:0.08, G:0.03, T:0.03
Consensus pattern (12 bp):
AAAAAAAAAACA
Found at i:26365734 original size:22 final size:22
Alignment explanation
Indices: 26365687--26365735 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
26365677 AGATTTTGAG
* * *
26365687 ATTTGTAAGACCTCCGGGCATG
1 ATTTCTAAGACCTCCGGACATA
*
26365709 ATTTCTAAGACCTCTGGACATA
1 ATTTCTAAGACCTCCGGACATA
26365731 ATTTC
1 ATTTC
26365736 GATTTACGGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (22 bp):
ATTTCTAAGACCTCCGGACATA
Found at i:26365823 original size:21 final size:21
Alignment explanation
Indices: 26365794--26365833 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
26365784 TATCCCAGTC
*
26365794 AATTCTGTAAGACCTCCGGAT
1 AATTATGTAAGACCTCCGGAT
26365815 AATTATGTAAGACCTCCGG
1 AATTATGTAAGACCTCCGG
26365834 GCATGATTCT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.30, C:0.23, G:0.20, T:0.28
Consensus pattern (21 bp):
AATTATGTAAGACCTCCGGAT
Found at i:26365850 original size:23 final size:22
Alignment explanation
Indices: 26365795--26365872 Score: 88
Period size: 23 Copynumber: 3.5 Consensus size: 22
26365785 ATCCCAGTCA
*
26365795 ATTCTGTAAGACCTCCGG-ATA
1 ATTCTGTAAGACCTCCGGCATG
*
26365816 ATTATGTAAGACCTCCGGGCATG
1 ATTCTGTAAGACCTCC-GGCATG
*
26365839 ATTCTGTAAGACTTCCAGGCATG
1 ATTCTGTAAGACCTCC-GGCATG
*
26365862 ATT-TCTAAGAC
1 ATTCTGTAAGAC
26365873 TTTTGGGTAT
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
21 15 0.31
22 9 0.18
23 25 0.51
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.29
Consensus pattern (22 bp):
ATTCTGTAAGACCTCCGGCATG
Found at i:26366150 original size:87 final size:86
Alignment explanation
Indices: 26365867--26366150 Score: 307
Period size: 87 Copynumber: 3.3 Consensus size: 86
26365857 GCATGATTTC
* * * * * *
26365867 TAAGACTTTTGGGTATAATTTCGATTCGCAATGTTATCTCGATCGATTCTTTATCTTTCGACTTG
1 TAAGACCTCTGGGCATAATTTCGATTCGC-ATGTTGTCTCGATCGATTTTTTAT-TTTTGACTTG
** **
26365932 TGGTGTTATCTTAGTTGATTCTG
64 TGGTGTTATCCCAGTCAATTCTG
* * * * * * *
26365955 TAAGACCTCCGGGCATAAATTCGATTCGCAGTGTTGTTTTGATTGATTTTTTATTTTTAACTTGC
1 TAAGACCTCTGGGCATAATTTCGATTCGCA-TGTTGTCTCGATCGATTTTTTATTTTTGACTTGT
*
26366020 GGTGTTATCCCAATCAATTCTG
65 GGTGTTATCCCAGTCAATTCTG
* * * *
26366042 TAAGGCCTCTGGGCATAATTTCGATTCACGATGTTGTCCCAATCGATTTTTTATTTTTGACTTGT
1 TAAGACCTCTGGGCATAATTTCGATTCGC-ATGTTGTCTCGATCGATTTTTTATTTTTGACTTGT
26366107 GGTGTTATCCCAGTCAATTCTG
65 GGTGTTATCCCAGTCAATTCTG
* * *
26366129 TAAGACTTCTGAGCATGATTTC
1 TAAGACCTCTGGGCATAATTTC
26366151 TAAGATCTCC
Statistics
Matches: 160, Mismatches: 34, Indels: 5
0.80 0.17 0.03
Matches are distributed among these distances:
87 117 0.73
88 43 0.27
ACGTcount: A:0.21, C:0.17, G:0.19, T:0.43
Consensus pattern (86 bp):
TAAGACCTCTGGGCATAATTTCGATTCGCATGTTGTCTCGATCGATTTTTTATTTTTGACTTGTG
GTGTTATCCCAGTCAATTCTG
Found at i:26366297 original size:87 final size:87
Alignment explanation
Indices: 26366151--26366334 Score: 278
Period size: 87 Copynumber: 2.1 Consensus size: 87
26366141 GCATGATTTC
* * *
26366151 TAAGATCTCCAGGCATAAATTTGATTCACGGTGTTGTCCCAATTAATTTTTTATTTTTGACTTGC
1 TAAGACCTCTAGGCATAAATTTGATTCACGGTGTTGTCCCAATCAATTTTTTATTTTTGACTTGC
26366216 GGTGTTATCCCAGTCAATTCTG
66 GGTGTTATCCCAGTCAATTCTG
* * * * *
26366238 TAAGACCTCTAGGCATAATTTTGATTTACGGTGTTGTCTCGATCGATTTTTTATTTTTGACTTGC
1 TAAGACCTCTAGGCATAAATTTGATTCACGGTGTTGTCCCAATCAATTTTTTATTTTTGACTTGC
* *
26366303 GGTGTTATTCCAGTCAATTTTG
66 GGTGTTATCCCAGTCAATTCTG
26366325 TAAGACCTCT
1 TAAGACCTCT
26366335 GGACATGATT
Statistics
Matches: 87, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
87 87 1.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (87 bp):
TAAGACCTCTAGGCATAAATTTGATTCACGGTGTTGTCCCAATCAATTTTTTATTTTTGACTTGC
GGTGTTATCCCAGTCAATTCTG
Found at i:26366300 original size:196 final size:196
Alignment explanation
Indices: 26365955--26366355 Score: 579
Period size: 196 Copynumber: 2.0 Consensus size: 196
26365945 GTTGATTCTG
* * **** *
26365955 TAAGACCTCCGGGCATAAATTCGATTCGCAGTGTTGTTTTGATTGATTTTTTATTTTTAACTTGC
1 TAAGACCTCCAGGCATAAATTCGATTCACAGTGTTGTCCCAATTAATTTTTTATTTTTAACTTGC
* *
26366020 GGTGTTATCCCAATCAATTCTGTAAGGCCTCTGGGCATAATTTCGATTCACGATGTTGTCCCAAT
66 GGTGTTATCCCAATCAATTCTGTAAGACCTCTAGGCATAATTTCGATTCACGATGTTGTCCCAAT
* *
26366085 CGATTTTTTATTTTTGACTTGTGGTGTTATCCCAGTCAATTCTGTAAGACTTCT-GAGCATGATT
131 CGATTTTTTATTTTTGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCTGGA-CATGATT
26366149 TC
195 TC
* * * *
26366151 TAAGATCTCCAGGCATAAATTTGATTCACGGTGTTGTCCCAATTAATTTTTTATTTTTGACTTGC
1 TAAGACCTCCAGGCATAAATTCGATTCACAGTGTTGTCCCAATTAATTTTTTATTTTTAACTTGC
* * * * * *
26366216 GGTGTTATCCCAGTCAATTCTGTAAGACCTCTAGGCATAATTTTGATTTACGGTGTTGTCTCGAT
66 GGTGTTATCCCAATCAATTCTGTAAGACCTCTAGGCATAATTTCGATTCACGATGTTGTCCCAAT
* *
26366281 CGATTTTTTATTTTTGACTTGCGGTGTTATTCCAGTCAATTTTGTAAGACCTCTGGACATGATTT
131 CGATTTTTTATTTTTGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCTGGACATGATTT
26366346 C
196 C
26366347 TAAGACCTC
1 TAAGACCTC
26366356 TGGGCATGAT
Statistics
Matches: 180, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
196 178 0.99
197 2 0.01
ACGTcount: A:0.22, C:0.18, G:0.18, T:0.41
Consensus pattern (196 bp):
TAAGACCTCCAGGCATAAATTCGATTCACAGTGTTGTCCCAATTAATTTTTTATTTTTAACTTGC
GGTGTTATCCCAATCAATTCTGTAAGACCTCTAGGCATAATTTCGATTCACGATGTTGTCCCAAT
CGATTTTTTATTTTTGACTTGCGGTGTTATCCCAGTCAATTCTGTAAGACCTCTGGACATGATTT
C
Found at i:26366387 original size:45 final size:44
Alignment explanation
Indices: 26366321--26366478 Score: 176
Period size: 45 Copynumber: 3.6 Consensus size: 44
26366311 TCCAGTCAAT
* * *
26366321 TTTGTAAGACCTCTGGACATGATTTCTAAGACCTCTGGGCATGA
1 TTTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGGCATGA
*
26366365 TTCTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGACA--A
1 TT-TGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGGCATGA
* * * *
26366408 TTATTTAAGACCTTCGGGCATGATTCTGTAAGACCTCCGGGTATGA
1 TT-TGTAAGACCTCCGGGCATGATT-TCTAAGACCTCCGGGCATGA
* * *
26366454 TTTCTAAGACTTCCGGGCATAATTT
1 TTTGTAAGACCTCCGGGCATGATTT
26366479 TGATTCACGG
Statistics
Matches: 96, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
43 23 0.24
44 17 0.18
45 53 0.55
46 3 0.03
ACGTcount: A:0.25, C:0.22, G:0.22, T:0.32
Consensus pattern (44 bp):
TTTGTAAGACCTCCGGGCATGATTTCTAAGACCTCCGGGCATGA
Found at i:26366432 original size:66 final size:66
Alignment explanation
Indices: 26366325--26366469 Score: 213
Period size: 66 Copynumber: 2.2 Consensus size: 66
26366315 GTCAATTTTG
*
26366325 TAAGACCTCTGGACATGATTTCTAAGACCTCTGGGCATGATTCTGTAAGACCTCCGGGCATGATT
1 TAAGACCTCCGGACA-GATTTCTAAGACCTCTGGGCATGATTCTGTAAGACCTCCGGGCATGATT
26366390 TC
65 TC
* *
26366392 TAAGACCTCCGGACA-ATTATTTAAGACCT-TCGGGCATGATTCTGTAAGACCTCCGGGTATGAT
1 TAAGACCTCCGGACAGATT-TCTAAGACCTCT-GGGCATGATTCTGTAAGACCTCCGGGCATGAT
26366455 TTC
64 TTC
*
26366458 TAAGACTTCCGG
1 TAAGACCTCCGG
26366470 GCATAATTTT
Statistics
Matches: 72, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
65 4 0.06
66 54 0.75
67 14 0.19
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.30
Consensus pattern (66 bp):
TAAGACCTCCGGACAGATTTCTAAGACCTCTGGGCATGATTCTGTAAGACCTCCGGGCATGATTT
C
Found at i:26366478 original size:22 final size:22
Alignment explanation
Indices: 26366325--26366478 Score: 168
Period size: 22 Copynumber: 7.0 Consensus size: 22
26366315 GTCAATTTTG
* *
26366325 TAAGACCTCTGGACATGATTTC
1 TAAGACCTCCGGGCATGATTTC
* *
26366347 TAAGACCTCTGGGCATGATTCTG
1 TAAGACCTCCGGGCATGATT-TC
26366370 TAAGACCTCCGGGCATGATTTC
1 TAAGACCTCCGGGCATGATTTC
* *
26366392 TAAGACCTCCGGACA--ATTATT
1 TAAGACCTCCGGGCATGATT-TC
* *
26366413 TAAGACCTTCGGGCATGATTCTG
1 TAAGACCTCCGGGCATGATT-TC
*
26366436 TAAGACCTCCGGGTATGATTTC
1 TAAGACCTCCGGGCATGATTTC
* *
26366458 TAAGACTTCCGGGCATAATTT
1 TAAGACCTCCGGGCATGATTT
26366479 TGATTCACGG
Statistics
Matches: 112, Mismatches: 16, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
20 3 0.03
21 14 0.12
22 53 0.47
23 42 0.38
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (22 bp):
TAAGACCTCCGGGCATGATTTC
Found at i:26366548 original size:18 final size:18
Alignment explanation
Indices: 26366525--26366563 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
26366515 TGACTTGCGG
26366525 TGTTA-TCCTAGTCAATTC
1 TGTTATTCC-AGTCAATTC
26366543 TGTTATTCCAGTCAATTC
1 TGTTATTCCAGTCAATTC
26366561 TGT
1 TGT
26366564 AAAACCTCCG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 17 0.85
19 3 0.15
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.46
Consensus pattern (18 bp):
TGTTATTCCAGTCAATTC
Found at i:26366656 original size:127 final size:127
Alignment explanation
Indices: 26366430--26366672 Score: 369
Period size: 127 Copynumber: 1.9 Consensus size: 127
26366420 TTCGGGCATG
* * * * * *
26366430 ATTCTGTAAGACCTCCGGGTATGATTTCTAAGACTTCCGGGCATAATTTTGATTCACGGTGTTGT
1 ATTCTGTAAAACCTCCGGGCATGATTTCTAAGACCTCCAGGCATAATTTAGATTCACGGTGTTCT
* * *
26366495 CCCAATCGATTTTTTATTTCTGACTTGCGGTGTTATCCTAGTCAATTCTGTTATTCCAGTCA
66 CCCAATCGATTTTTTATTTCTGACTTGCAGTGTTATCCCAGTCAACTCTGTTATTCCAGTCA
26366557 ATTCTGTAAAACCTCCGGGCATGATTTCTAAGACCTCCAGGCATAATTTAGATTCACGGTGTTCT
1 ATTCTGTAAAACCTCCGGGCATGATTTCTAAGACCTCCAGGCATAATTTAGATTCACGGTGTTCT
****
26366622 TTTGATCGATTTTTTATTTCTGACTTGCAGTGTTATCCCAGTCAACTCTGT
66 CCCAATCGATTTTTTATTTCTGACTTGCAGTGTTATCCCAGTCAACTCTGT
26366673 AAGACCTCTG
Statistics
Matches: 103, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
127 103 1.00
ACGTcount: A:0.21, C:0.21, G:0.18, T:0.40
Consensus pattern (127 bp):
ATTCTGTAAAACCTCCGGGCATGATTTCTAAGACCTCCAGGCATAATTTAGATTCACGGTGTTCT
CCCAATCGATTTTTTATTTCTGACTTGCAGTGTTATCCCAGTCAACTCTGTTATTCCAGTCA
Found at i:26366753 original size:22 final size:21
Alignment explanation
Indices: 26366672--26366758 Score: 95
Period size: 22 Copynumber: 4.0 Consensus size: 21
26366662 GTCAACTCTG
*
26366672 TAAGACCTCTGTGCATGATTTC
1 TAAGACCTCTG-GCATAATTTC
* *
26366694 TAAGACCTCTGG-ACAATTATG
1 TAAGACCTCTGGCATAATT-TC
26366715 TAAGACCTCTGGACATAATTTC
1 TAAGACCTCTGG-CATAATTTC
*
26366737 TAAGACCTCCGAGCATAATTTC
1 TAAGACCTCTG-GCATAATTTC
26366759 GATTTGCGGT
Statistics
Matches: 55, Mismatches: 6, Indels: 8
0.80 0.09 0.12
Matches are distributed among these distances:
20 4 0.07
21 14 0.25
22 31 0.56
23 6 0.11
ACGTcount: A:0.30, C:0.23, G:0.16, T:0.31
Consensus pattern (21 bp):
TAAGACCTCTGGCATAATTTC
Found at i:26366831 original size:152 final size:152
Alignment explanation
Indices: 26366555--26366832 Score: 405
Period size: 152 Copynumber: 1.8 Consensus size: 152
26366545 TTATTCCAGT
* * *
26366555 CAATTCTGTAAAACCTCCGGGCATGATTTCTAAGACCTCCAGGCATAATTTAGATTCACGGTGTT
1 CAATTATGTAAAACCTCCGGACATAATTTCTAAGACCTCCAGGCATAATTTAGATTCACGGTGTT
* * *
26366620 CTTTTGATCGATTTTTTATTTCTGACTTGCAGTGTTATCCCAGTCAACTCTGTAAGACCTCTGTG
66 CTCTCGATCGATTTTTTATTTCTGACTTACAGTGTTATCCCAGTCAACTCTGTAAGACCTCTGTG
26366685 CATGATTTCTAAGACCTCTGGA
131 CATGATTTCTAAGACCTCTGGA
* * * **
26366707 CAATTATGTAAGACCTCTGGACATAATTTCTAAGACCTCC-GAGCATAATTTCGATTTGCGGTGT
1 CAATTATGTAAAACCTCCGGACATAATTTCTAAGACCTCCAG-GCATAATTTAGATTCACGGTGT
* * * *
26366771 TGTCTCGATCGATTTTTTATTTTTGACTTACGGTGTTATCCCAGTCAATTCTGTAAGACCTC
65 TCTCTCGATCGATTTTTTATTTCTGACTTACAGTGTTATCCCAGTCAACTCTGTAAGACCTC
26366833 CGGCCATAAT
Statistics
Matches: 110, Mismatches: 15, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
151 1 0.01
152 109 0.99
ACGTcount: A:0.24, C:0.22, G:0.18, T:0.37
Consensus pattern (152 bp):
CAATTATGTAAAACCTCCGGACATAATTTCTAAGACCTCCAGGCATAATTTAGATTCACGGTGTT
CTCTCGATCGATTTTTTATTTCTGACTTACAGTGTTATCCCAGTCAACTCTGTAAGACCTCTGTG
CATGATTTCTAAGACCTCTGGA
Found at i:26366933 original size:88 final size:87
Alignment explanation
Indices: 26366737--26366919 Score: 235
Period size: 87 Copynumber: 2.1 Consensus size: 87
26366727 ACATAATTTC
* * * *
26366737 TAAGACCTCCGAG-CATAATTTCGATTTGCGGTGTTGTCTCGATCGATTTTTTATTTTTGACTTA
1 TAAGACCTCCG-GCCATAATTTCGATTCGCGATGTTATCTCGATCGATTTTTCATTTTTGACTTA
26366801 CGGTGTTATCCCAGTCAATTCTG
65 CGGTGTTATCCCAGTCAATTCTG
*
26366824 TAAGACCTCCGGCCATAATTTCGATTCGCGATGTTATC-CTGATCGATTTTTCCTCTTTTGACTT
1 TAAGACCTCCGGCCATAATTTCGATTCGCGATGTTATCTC-GATCGATTTTTCAT-TTTTGACTT
** * **
26366888 GTGGTGTTATCCTAGTTGATTCTG
64 ACGGTGTTATCCCAGTCAATTCTG
26366912 TAAGACCT
1 TAAGACCT
26366920 TCGGGTAAGA
Statistics
Matches: 83, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
86 2 0.02
87 45 0.54
88 36 0.43
ACGTcount: A:0.19, C:0.21, G:0.19, T:0.41
Consensus pattern (87 bp):
TAAGACCTCCGGCCATAATTTCGATTCGCGATGTTATCTCGATCGATTTTTCATTTTTGACTTAC
GGTGTTATCCCAGTCAATTCTG
Found at i:26367208 original size:218 final size:219
Alignment explanation
Indices: 26366824--26367247 Score: 530
Period size: 218 Copynumber: 1.9 Consensus size: 219
26366814 GTCAATTCTG
* * *
26366824 TAAGACCTCCGGCCATAATTTCGATTCGCGATGTTATCCTGATCGATTTTTCCTCTTTTGACTTG
1 TAAGACCTCCGGCCATAATTTCGATTCGCGATGTTATCCCGATCGATTTTTCATCTTTTAACTTG
*** * * * ** ** * *
26366889 TGGTGTTATCCTAGTTGATTCTGTAAGACCTTCGGGTAAGATTTCTAAGATTTTCGGGCATAAAT
66 CAATGTTATCCCAATTGATTCTGTAAGACCTCCGGACAAGATTTCTAAGACCTCCGAGCATAAAT
** *
26366954 TTGATTAGCGGTGTTATCCCGATCGATTCCTTATTTTTTGACTTATGATTTATCCCAATCGATTC
131 TTGATTAGCGGTGTTATCCCGATCGATTCCTTATTTTTCAACTTACGATTTATCCCAATCGATTC
26367019 TGTAAGACCTCTGGGCATGATTTC
196 TGTAAGACCTCTGGGCATGATTTC
* * * *
26367043 TAAGACCTCCGGGCATAAATTT-GATTTGCGGTGTTATCCCGATCGATTTTTTAT-TTTTCAACT
1 TAAGACCTCCGGCCAT-AATTTCGATTCGCGATGTTATCCCGATCGATTTTTCATCTTTT-AACT
* *
26367106 TGCAAT-TTATCCCAATTGATTCTGTAAGACCTCCGGACATGATTTGTAAGACCTCCGAGCATAA
64 TGCAATGTTATCCCAATTGATTCTGTAAGACCTCCGGACAAGATTTCTAAGACCTCCGAGCATAA
* * * ** * *
26367170 ATTTGATTCGCTGTGTTATCTCGATCGATTTTTTATTTTTCAACTTACGGTTTATCTCAATCGAT
129 ATTTGATTAGCGGTGTTATCCCGATCGATTCCTTATTTTTCAACTTACGATTTATCCCAATCGAT
26367235 TCTGTAAGACCTC
194 TCTGTAAGACCTC
26367248 CGGACATAAA
Statistics
Matches: 172, Mismatches: 31, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
218 119 0.69
219 48 0.28
220 5 0.03
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (219 bp):
TAAGACCTCCGGCCATAATTTCGATTCGCGATGTTATCCCGATCGATTTTTCATCTTTTAACTTG
CAATGTTATCCCAATTGATTCTGTAAGACCTCCGGACAAGATTTCTAAGACCTCCGAGCATAAAT
TTGATTAGCGGTGTTATCCCGATCGATTCCTTATTTTTCAACTTACGATTTATCCCAATCGATTC
TGTAAGACCTCTGGGCATGATTTC
Found at i:26367248 original size:109 final size:109
Alignment explanation
Indices: 26366824--26367254 Score: 479
Period size: 109 Copynumber: 3.9 Consensus size: 109
26366814 GTCAATTCTG
* * * * ** *
26366824 TAAGACCTCCGGCCAT-AATTTCGATTCGCGATGTTATCCTGATCGATTTTTCCTCTTTT-GACT
1 TAAGACCTCCGGGCATAAATTT-GATTAGCGGTGTTATCCCGATCGATTTTTTAT-TTTTCAACT
** * * * * * ** *
26366887 TGTGGTGTTATCCTAGTTGATTCTGTAAGACCTTCGGGTAAGATTTC
64 TACGAT-TTATCCCAATCGATTCTGTAAGACCTCCGGACATGATTTC
** * ** **
26366934 TAAGATTTTCGGGCATAAATTTGATTAGCGGTGTTATCCCGATCGATTCCTTATTTTTTGACTTA
1 TAAGACCTCCGGGCATAAATTTGATTAGCGGTGTTATCCCGATCGATTTTTTATTTTTCAACTTA
* * *
26366999 TGATTTATCCCAATCGATTCTGTAAGACCTCTGGGCATGATTTC
66 CGATTTATCCCAATCGATTCTGTAAGACCTCCGGACATGATTTC
* *
26367043 TAAGACCTCCGGGCATAAATTTGATTTGCGGTGTTATCCCGATCGATTTTTTATTTTTCAACTTG
1 TAAGACCTCCGGGCATAAATTTGATTAGCGGTGTTATCCCGATCGATTTTTTATTTTTCAACTTA
* * *
26367108 CAATTTATCCCAATTGATTCTGTAAGACCTCCGGACATGATTTG
66 CGATTTATCCCAATCGATTCTGTAAGACCTCCGGACATGATTTC
* * * *
26367152 TAAGACCTCCGAGCATAAATTTGATTCGCTGTGTTATCTCGATCGATTTTTTATTTTTCAACTTA
1 TAAGACCTCCGGGCATAAATTTGATTAGCGGTGTTATCCCGATCGATTTTTTATTTTTCAACTTA
* *
26367217 CGGTTTATCTCAATCGATTCTGTAAGACCTCCGGACAT
66 CGATTTATCCCAATCGATTCTGTAAGACCTCCGGACAT
26367255 AAATTCAAGC
Statistics
Matches: 275, Mismatches: 44, Indels: 5
0.85 0.14 0.02
Matches are distributed among these distances:
109 225 0.82
110 45 0.16
111 5 0.02
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (109 bp):
TAAGACCTCCGGGCATAAATTTGATTAGCGGTGTTATCCCGATCGATTTTTTATTTTTCAACTTA
CGATTTATCCCAATCGATTCTGTAAGACCTCCGGACATGATTTC
Found at i:26367481 original size:22 final size:20
Alignment explanation
Indices: 26367455--26367512 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 20
26367445 ATCTATTGTT
*
26367455 TTAATTTTAAATAATAATAATA
1 TTAATTTTAAAAAATAAT--TA
*
26367477 TTAATATTAAAAAATAATTA
1 TTAATTTTAAAAAATAATTA
* *
26367497 TTAATTATATAAAATA
1 TTAATTTTAAAAAATA
26367513 TAAAAAACAA
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
20 15 0.48
22 16 0.52
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
TTAATTTTAAAAAATAATTA
Found at i:26367542 original size:27 final size:27
Alignment explanation
Indices: 26367507--26367563 Score: 89
Period size: 28 Copynumber: 2.1 Consensus size: 27
26367497 TTAATTATAT
*
26367507 AAAATATAAAAAAC-AAAAAAATGAAA
1 AAAATATAAAAAACAAAAAAAAAGAAA
26367533 AAAATAATAAAAAACAAAAAAAAAGAAA
1 AAAAT-ATAAAAAACAAAAAAAAAGAAA
26367561 AAA
1 AAA
26367564 CAGAAAGTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 5 0.18
27 9 0.32
28 14 0.50
ACGTcount: A:0.84, C:0.04, G:0.04, T:0.09
Consensus pattern (27 bp):
AAAATATAAAAAACAAAAAAAAAGAAA
Found at i:26367551 original size:17 final size:17
Alignment explanation
Indices: 26367530--26367565 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
26367520 CAAAAAAATG
*
26367530 AAAAAAATAATAAAAAAC
1 AAAAAAA-AAGAAAAAAC
26367548 AAAAAAAAAGAAAAAAC
1 AAAAAAAAAGAAAAAAC
26367565 A
1 A
26367566 GAAAGTAGGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.86, C:0.06, G:0.03, T:0.06
Consensus pattern (17 bp):
AAAAAAAAAGAAAAAAC
Found at i:26369089 original size:33 final size:33
Alignment explanation
Indices: 26369052--26369122 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
26369042 TTTAAAACTT
*
26369052 CTAAAAATAAAAAATCCTTTAAATCCAAACCCC
1 CTAAAAATAAAAAATCCCTTAAATCCAAACCCC
** *
26369085 CTAAAAATCCAAAATCCCTTAAATCCAAACCTC
1 CTAAAAATAAAAAATCCCTTAAATCCAAACCCC
26369118 CTAAA
1 CTAAA
26369123 CCCCTAAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (33 bp):
CTAAAAATAAAAAATCCCTTAAATCCAAACCCC
Found at i:26369094 original size:17 final size:17
Alignment explanation
Indices: 26369072--26369122 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
26369062 AAAATCCTTT
26369072 AAATCCAAACCCCCTAA
1 AAATCCAAACCCCCTAA
** *
26369089 AAATCCAAAATCCCT-T
1 AAATCCAAACCCCCTAA
*
26369105 AAATCCAAACCTCCTAA
1 AAATCCAAACCCCCTAA
26369122 A
1 A
26369123 CCCCTAAAAT
Statistics
Matches: 26, Mismatches: 7, Indels: 2
0.74 0.20 0.06
Matches are distributed among these distances:
16 12 0.46
17 14 0.54
ACGTcount: A:0.47, C:0.35, G:0.00, T:0.18
Consensus pattern (17 bp):
AAATCCAAACCCCCTAA
Found at i:26369110 original size:16 final size:16
Alignment explanation
Indices: 26369062--26369113 Score: 59
Period size: 16 Copynumber: 3.2 Consensus size: 16
26369052 CTAAAAATAA
*
26369062 AAAATCCTTTAAATCC
1 AAAATCCCTTAAATCC
** *
26369078 AAACCCCCTAAAAATCC
1 AAAATCCCT-TAAATCC
26369095 AAAATCCCTTAAATCC
1 AAAATCCCTTAAATCC
26369111 AAA
1 AAA
26369114 CCTCCTAAAC
Statistics
Matches: 28, Mismatches: 7, Indels: 2
0.76 0.19 0.05
Matches are distributed among these distances:
16 15 0.54
17 13 0.46
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (16 bp):
AAAATCCCTTAAATCC
Found at i:26369132 original size:40 final size:40
Alignment explanation
Indices: 26369072--26369163 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 40
26369062 AAAATCCTTT
*
26369072 AAATCC-AAACCCCCTAAAAATCCAAAA-TCCCTTAAATCCA
1 AAATCCTAAA-CCCCTAAAAATCCAAAACTCCC-AAAATCCA
*
26369112 AACCTCCTAAACCCCT-AAAATCCAAAACCTCCCAAAATCCA
1 AA-ATCCTAAACCCCTAAAAATCCAAAA-CTCCCAAAATCCA
26369153 AAATCCTAAAC
1 AAATCCTAAAC
26369164 TTTTAAACTC
Statistics
Matches: 45, Mismatches: 3, Indels: 8
0.80 0.05 0.14
Matches are distributed among these distances:
40 21 0.47
41 17 0.38
42 7 0.16
ACGTcount: A:0.47, C:0.37, G:0.00, T:0.16
Consensus pattern (40 bp):
AAATCCTAAACCCCTAAAAATCCAAAACTCCCAAAATCCA
Found at i:26369155 original size:24 final size:24
Alignment explanation
Indices: 26369093--26369163 Score: 72
Period size: 24 Copynumber: 2.9 Consensus size: 24
26369083 CCCTAAAAAT
*
26369093 CCAAAATCCCTTAAATCCAAACCTC
1 CCAAAA-CCCTAAAATCCAAACCTC
* *
26369118 CTAAACCCCTAAAATCCAAAACCTC
1 CCAAAACCCTAAAATCC-AAACCTC
*
26369143 CCAAAATCC-AAAATCCTAAAC
1 CCAAAACCCTAAAATCC-AAAC
26369164 TTTTAAACTC
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
24 21 0.55
25 17 0.45
ACGTcount: A:0.45, C:0.38, G:0.00, T:0.17
Consensus pattern (24 bp):
CCAAAACCCTAAAATCCAAACCTC
Found at i:26371366 original size:153 final size:153
Alignment explanation
Indices: 26371084--26371383 Score: 546
Period size: 153 Copynumber: 2.0 Consensus size: 153
26371074 GCATCTTTTT
*
26371084 CTTAGTTGTAGCAGGTATTAACTTTGAGCTGCCATGCTAGCTGTGTTTCCCTCCTTTTGTAGCAC
1 CTTAGTTGTAGCAGGTATTAACTTTGAGCTACCATGCTAGCTGTGTTTCCCTCCTTTTGTAGCAC
* *
26371149 ATGTGATGACATCTTAAGTGGACCTATGATAATTCTATAAAATATAAAATTATCAAATATCAATT
66 ATGTGATGACAGCTTAAGTGGACCTATGATAATTCTATAAAATATAAAATTATCAAATAGCAATT
*
26371214 GCAAATTGATGATGCTAAAGATG
131 GCAAATTCATGATGCTAAAGATG
*
26371237 CTTAGTTGTAGCAGGTATTAACTTTGAGCTACCTTGCTAGCTGTGTTTCCCTCCTTTTGTAGCAC
1 CTTAGTTGTAGCAGGTATTAACTTTGAGCTACCATGCTAGCTGTGTTTCCCTCCTTTTGTAGCAC
26371302 ATGTGATGACAGCTTAAGTGGACCTATGATAATTCTATAAAATATAAAATTATCAAATAGCAATT
66 ATGTGATGACAGCTTAAGTGGACCTATGATAATTCTATAAAATATAAAATTATCAAATAGCAATT
*
26371367 GTAAATTCATGATGCTA
131 GCAAATTCATGATGCTA
26371384 GCTTAACTTT
Statistics
Matches: 141, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
153 141 1.00
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36
Consensus pattern (153 bp):
CTTAGTTGTAGCAGGTATTAACTTTGAGCTACCATGCTAGCTGTGTTTCCCTCCTTTTGTAGCAC
ATGTGATGACAGCTTAAGTGGACCTATGATAATTCTATAAAATATAAAATTATCAAATAGCAATT
GCAAATTCATGATGCTAAAGATG
Found at i:26372677 original size:304 final size:304
Alignment explanation
Indices: 26372128--26372720 Score: 1001
Period size: 304 Copynumber: 2.0 Consensus size: 304
26372118 ACTTTTTACA
* * *
26372128 TGTTTTGCTCACTCCTTAAAATTGCCACTTATTACAGAATGGCAAGCCAACTGACTATGAACAAT
1 TGTTTTGCTCACTCATTAAAATTGCCACTTATTACAGAATGGCAAGCCAACCGACCATGAACAAT
*
26372193 GTAAAGCCTTCAACAGTACAAATCCAATGACAACCTGTTGCTTATAAGAGTGGTTGTTGCTTATC
66 GTAAAGCCTTCAACAGTACAAATCCAATGACAACCTGTTGCTCATAAGAGTGGTTGTTGCTTATC
* * *
26372258 TTAAAAACTCAACTATGTATTAGGAAGCTCTTTTTCTATTGCAGTATACTGCCTCTTGTGGTTTG
131 CTAAAAACTCAACAATGTATTAGGAAACTCTTTTTCTATTGCAGTATACTGCCTCTTGTGGTTTG
* *
26372323 TAAGATTATATGTAACTCATCAATGGCAAATTTATTTGTTTTGGTTCATTTCTACACACTTGTTC
196 TAAGATTACATGTAACTCATCAATGGCAAATTTATTTGTTCTGGTTCATTTCTACACACTTGTTC
*
26372388 ATGTGAAA-GCCTTGTACAATGTATGATTGCCATTCCTTTTTGTG
261 ATGTGAAACG-CTTGTACAATATATGATTGCCATTCCTTTTTGTG
* * *
26372432 TGTTTTGCTCACTTATTAAAATTGCCACTTTTTGCAGAATGGCAAGCCAACCGACCATGAACAAT
1 TGTTTTGCTCACTCATTAAAATTGCCACTTATTACAGAATGGCAAGCCAACCGACCATGAACAAT
* *
26372497 GTAAAGCCTTCGACGGTACAAATCCAATGACAACCTGTTGCTCATAAGAGTGGTTGTTGCTCT-T
66 GTAAAGCCTTCAACAGTACAAATCCAATGACAACCTGTTGCTCATAAGAGTGGTTGTTGCT-TAT
*
26372561 CCTAAAAACTCAACAATGTATTAGGAAACTCTTTTTCTATTGCAGTATGCTGCCTCTTGTGGTTT
130 CCTAAAAACTCAACAATGTATTAGGAAACTCTTTTTCTATTGCAGTATACTGCCTCTTGTGGTTT
*
26372626 GTAAGATTACATGTAACTCATCTATGGCAAATTTATTTGTTCTGGTTCATTTCTACACACTTGTT
195 GTAAGATTACATGTAACTCATCAATGGCAAATTTATTTGTTCTGGTTCATTTCTACACACTTGTT
26372691 CATGTGAAACGCTTGTACAATATATGATTG
260 CATGTGAAACGCTTGTACAATATATGATTG
26372721 TTGATTTAAT
Statistics
Matches: 270, Mismatches: 17, Indels: 4
0.93 0.06 0.01
Matches are distributed among these distances:
304 268 0.99
305 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (304 bp):
TGTTTTGCTCACTCATTAAAATTGCCACTTATTACAGAATGGCAAGCCAACCGACCATGAACAAT
GTAAAGCCTTCAACAGTACAAATCCAATGACAACCTGTTGCTCATAAGAGTGGTTGTTGCTTATC
CTAAAAACTCAACAATGTATTAGGAAACTCTTTTTCTATTGCAGTATACTGCCTCTTGTGGTTTG
TAAGATTACATGTAACTCATCAATGGCAAATTTATTTGTTCTGGTTCATTTCTACACACTTGTTC
ATGTGAAACGCTTGTACAATATATGATTGCCATTCCTTTTTGTG
Found at i:26374932 original size:20 final size:20
Alignment explanation
Indices: 26374894--26374934 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
26374884 ATTTTTTTTA
*
26374894 TTTTTTGGTATTTTATATTT
1 TTTTTTGGTATTTCATATTT
*
26374914 TTTTTTGGTATTTCGTATTT
1 TTTTTTGGTATTTCATATTT
26374934 T
1 T
26374935 GATTTTTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.12, C:0.02, G:0.12, T:0.73
Consensus pattern (20 bp):
TTTTTTGGTATTTCATATTT
Found at i:26374948 original size:23 final size:24
Alignment explanation
Indices: 26374913--26374957 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
26374903 ATTTTATATT
*
26374913 TTTTTTTGGTATTTCGTATTTTGA
1 TTTTTTTGATATTTCGTATTTTGA
*
26374937 TTTTTTT-ATATTTTGTATTTT
1 TTTTTTTGATATTTCGTATTTT
26374958 TGTTTAATTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 12 0.63
24 7 0.37
ACGTcount: A:0.13, C:0.02, G:0.11, T:0.73
Consensus pattern (24 bp):
TTTTTTTGATATTTCGTATTTTGA
Found at i:26374972 original size:17 final size:18
Alignment explanation
Indices: 26374929--26374972 Score: 51
Period size: 18 Copynumber: 2.6 Consensus size: 18
26374919 TGGTATTTCG
26374929 TATTTTG-A-TTTTTTTA
1 TATTTTGTATTTTTTTTA
26374945 TATTTTGTATTTTTGTTTA
1 TATTTTGTATTTTT-TTTA
26374964 -ATTTT-TATT
1 TATTTTGTATT
26374973 AAATACAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 7 0.28
17 5 0.20
18 9 0.36
19 4 0.16
ACGTcount: A:0.18, C:0.00, G:0.07, T:0.75
Consensus pattern (18 bp):
TATTTTGTATTTTTTTTA
Found at i:26374983 original size:7 final size:7
Alignment explanation
Indices: 26374973--26375036 Score: 67
Period size: 7 Copynumber: 8.4 Consensus size: 7
26374963 AATTTTTATT
26374973 AAATACA
1 AAATACA
26374980 AAATACAAAA
1 AAATAC---A
26374990 AAATAC-
1 AAATACA
26374996 AAATACA
1 AAATACA
26375003 AAATACCAAA
1 AAATA-C--A
26375013 AAATACA
1 AAATACA
26375020 AAATACA
1 AAATACA
26375027 AAATACA
1 AAATACA
26375034 AAA
1 AAA
26375037 ACATAATCAT
Statistics
Matches: 50, Mismatches: 0, Indels: 14
0.78 0.00 0.22
Matches are distributed among these distances:
6 6 0.12
7 29 0.58
8 1 0.02
9 1 0.02
10 13 0.26
ACGTcount: A:0.73, C:0.14, G:0.00, T:0.12
Consensus pattern (7 bp):
AAATACA
Found at i:26374992 original size:10 final size:10
Alignment explanation
Indices: 26374979--26375022 Score: 52
Period size: 10 Copynumber: 4.1 Consensus size: 10
26374969 TATTAAATAC
26374979 AAAATACAAA
1 AAAATACAAA
26374989 AAAATACAAATA
1 AAAATAC-AA-A
*
26375001 CAAAATACCAA
1 -AAAATACAAA
26375012 AAAATACAAA
1 AAAATACAAA
26375022 A
1 A
26375023 TACAAAATAC
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
10 17 0.59
11 3 0.10
12 2 0.07
13 7 0.24
ACGTcount: A:0.75, C:0.14, G:0.00, T:0.11
Consensus pattern (10 bp):
AAAATACAAA
Found at i:26375001 original size:16 final size:17
Alignment explanation
Indices: 26374973--26375037 Score: 66
Period size: 17 Copynumber: 4.1 Consensus size: 17
26374963 AATTTTTATT
26374973 AAATACAAAATACAAAA
1 AAATACAAAATACAAAA
26374990 AAATAC-AAATACAAAA
1 AAATACAAAATACAAAA
* ** *
26375006 TACCAAAAAATAC---A
1 AAATACAAAATACAAAA
26375020 AAATACAAAATACAAAA
1 AAATACAAAATACAAAA
26375037 A
1 A
26375038 CATAATCATA
Statistics
Matches: 36, Mismatches: 8, Indels: 8
0.69 0.15 0.15
Matches are distributed among these distances:
14 10 0.28
16 12 0.33
17 14 0.39
ACGTcount: A:0.74, C:0.14, G:0.00, T:0.12
Consensus pattern (17 bp):
AAATACAAAATACAAAA
Found at i:26375003 original size:23 final size:24
Alignment explanation
Indices: 26374973--26375037 Score: 114
Period size: 23 Copynumber: 2.8 Consensus size: 24
26374963 AATTTTTATT
26374973 AAATACAAAATACAAAAAAATAC-
1 AAATACAAAATACAAAAAAATACA
*
26374996 AAATACAAAATACCAAAAAATACA
1 AAATACAAAATACAAAAAAATACA
26375020 AAATACAAAATACAAAAA
1 AAATACAAAATACAAAAA
26375038 CATAATCATA
Statistics
Matches: 39, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
23 22 0.56
24 17 0.44
ACGTcount: A:0.74, C:0.14, G:0.00, T:0.12
Consensus pattern (24 bp):
AAATACAAAATACAAAAAAATACA
Found at i:26375346 original size:22 final size:23
Alignment explanation
Indices: 26375316--26375359 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
26375306 TGAGGGATGC
* *
26375316 TGTAGAAAA-AAAATAAAAACAT
1 TGTAAAAAACAAAAAAAAAACAT
26375338 TGTAAAAAACAAAAAAAAAACA
1 TGTAAAAAACAAAAAAAAAACA
26375360 CAATCCTCCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.73, C:0.07, G:0.07, T:0.14
Consensus pattern (23 bp):
TGTAAAAAACAAAAAAAAAACAT
Found at i:26376010 original size:12 final size:11
Alignment explanation
Indices: 26375984--26376034 Score: 59
Period size: 12 Copynumber: 4.5 Consensus size: 11
26375974 GTAAAAAAAA
26375984 AATTTTTTT-T
1 AATTTTTTTAT
26375994 AATTTTTTTAT
1 AATTTTTTTAT
26376005 AGATTTTTTTAT
1 A-ATTTTTTTAT
*
26376017 ATATTATTTTAT
1 A-ATTTTTTTAT
*
26376029 TATTTT
1 AATTTT
26376035 AATTATTATT
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
10 9 0.26
11 6 0.17
12 20 0.57
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (11 bp):
AATTTTTTTAT
Found at i:26376034 original size:23 final size:24
Alignment explanation
Indices: 26375985--26376028 Score: 65
Period size: 24 Copynumber: 1.9 Consensus size: 24
26375975 TAAAAAAAAA
*
26375985 ATTTTTTT-TA-ATTTTTTTATAG
1 ATTTTTTTATATATTATTTTATAG
26376007 ATTTTTTTATATATTATTTTAT
1 ATTTTTTTATATATTATTTTAT
26376029 TATTTTAATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 2 0.11
24 9 0.47
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (24 bp):
ATTTTTTTATATATTATTTTATAG
Found at i:26378339 original size:96 final size:97
Alignment explanation
Indices: 26378174--26378355 Score: 294
Period size: 96 Copynumber: 1.9 Consensus size: 97
26378164 AATTCCTATA
* *
26378174 TTTATTCATGCAAAATTTCCTTATCATTTTACAAATAGATGGATATACTAAAGGTGAAAGTGCAA
1 TTTATTCATGCAAAATTTCCTTATCATCTTACAAACAGATGGATATACTAAAGGTGAAAGTGCAA
26378239 GATAAAAGAGTAAGTAATTAAGCAATTTGTTC
66 GATAAAAGAGTAAGTAATTAAGCAATTTGTTC
* * * **
26378271 TTTATTCATGCAAAATTT-CTTATCATCTTGCAGACAGGTGGATATACTAAAGGTGGTAGTGCAA
1 TTTATTCATGCAAAATTTCCTTATCATCTTACAAACAGATGGATATACTAAAGGTGAAAGTGCAA
26378335 GATAAAAGAGTAAGTAATTAA
66 GATAAAAGAGTAAGTAATTAA
26378356 ACATTTAGTT
Statistics
Matches: 78, Mismatches: 7, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
96 60 0.77
97 18 0.23
ACGTcount: A:0.39, C:0.10, G:0.18, T:0.33
Consensus pattern (97 bp):
TTTATTCATGCAAAATTTCCTTATCATCTTACAAACAGATGGATATACTAAAGGTGAAAGTGCAA
GATAAAAGAGTAAGTAATTAAGCAATTTGTTC
Found at i:26391212 original size:14 final size:15
Alignment explanation
Indices: 26391193--26391221 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
26391183 ATTAGTCTAA
26391193 AAAATGAT-TAAAAT
1 AAAATGATCTAAAAT
26391207 AAAATGATCTAAAAT
1 AAAATGATCTAAAAT
26391222 TGAATTGCTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.62, C:0.03, G:0.07, T:0.28
Consensus pattern (15 bp):
AAAATGATCTAAAAT
Found at i:26391569 original size:17 final size:17
Alignment explanation
Indices: 26391547--26391590 Score: 63
Period size: 17 Copynumber: 2.6 Consensus size: 17
26391537 CCAATTTAAT
*
26391547 AAAATT-CAATGAGGCCC
1 AAAATTACAAGGA-GCCC
26391564 AAAATTACAAGGAGCCC
1 AAAATTACAAGGAGCCC
26391581 AAAATTACAA
1 AAAATTACAA
26391591 ATAGAATCGT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
17 20 0.80
18 5 0.20
ACGTcount: A:0.50, C:0.20, G:0.14, T:0.16
Consensus pattern (17 bp):
AAAATTACAAGGAGCCC
Found at i:26396089 original size:19 final size:19
Alignment explanation
Indices: 26396044--26396090 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
26396034 GTAATAAAAA
* * *
26396044 ATTAAATTATTTAATATTT
1 ATTAAATTAATAAATAATT
26396063 A-TATAATTAATAAATAATT
1 ATTA-AATTAATAAATAATT
26396082 ATTAAATTA
1 ATTAAATTA
26396091 TTTTATGTTA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 2 0.09
19 19 0.83
20 2 0.09
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (19 bp):
ATTAAATTAATAAATAATT
Found at i:26396182 original size:19 final size:18
Alignment explanation
Indices: 26396131--26396183 Score: 52
Period size: 19 Copynumber: 2.8 Consensus size: 18
26396121 ATAATTAAAA
26396131 ATTATTTATTAATTAATTT
1 ATTATTTA-TAATTAATTT
* * *
26396150 ATTATATAACAATTTATTT
1 ATTAT-TTATAATTAATTT
26396169 ATTATTTGATAATTA
1 ATTATTT-ATAATTA
26396184 TTAAATCAAA
Statistics
Matches: 26, Mismatches: 6, Indels: 4
0.72 0.17 0.11
Matches are distributed among these distances:
18 1 0.04
19 23 0.88
20 2 0.08
ACGTcount: A:0.40, C:0.02, G:0.02, T:0.57
Consensus pattern (18 bp):
ATTATTTATAATTAATTT
Found at i:26399015 original size:17 final size:17
Alignment explanation
Indices: 26398982--26399015 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
26398972 AAACATTTGG
*
26398982 TTCAAGATTTAAATAAA
1 TTCAAGATCTAAATAAA
*
26398999 TTCAAGATCTAATTAAA
1 TTCAAGATCTAAATAAA
26399016 ATCTTGATAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.50, C:0.09, G:0.06, T:0.35
Consensus pattern (17 bp):
TTCAAGATCTAAATAAA
Found at i:26401674 original size:16 final size:17
Alignment explanation
Indices: 26401653--26401684 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26401643 TGTAAAACTA
26401653 GCTTTA-AAAATATTTT
1 GCTTTACAAAATATTTT
26401669 GCTTTACAAAATATTT
1 GCTTTACAAAATATTT
26401685 ACTTAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 6 0.40
17 9 0.60
ACGTcount: A:0.38, C:0.09, G:0.06, T:0.47
Consensus pattern (17 bp):
GCTTTACAAAATATTTT
Found at i:26406210 original size:15 final size:15
Alignment explanation
Indices: 26406190--26406231 Score: 66
Period size: 15 Copynumber: 2.8 Consensus size: 15
26406180 GTCTTTTACG
* *
26406190 TATTATTTTATTTTT
1 TATTATTTGAATTTT
26406205 TATTATTTGAATTTT
1 TATTATTTGAATTTT
26406220 TATTATTTGAAT
1 TATTATTTGAAT
26406232 ATTGAAAATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.26, C:0.00, G:0.05, T:0.69
Consensus pattern (15 bp):
TATTATTTGAATTTT
Found at i:26406983 original size:123 final size:119
Alignment explanation
Indices: 26406542--26407016 Score: 399
Period size: 124 Copynumber: 3.9 Consensus size: 119
26406532 ATTAGTTAAA
* * * * * * **
26406542 TTCTCAAAATATTT-TCAACACTTTCGAACTA-TTTAAAAATTTTTTTGCTTAAGATTTTCGATA
1 TTCT-AAAATATTTAT-AACATTTTAGAA-TATTTTAAAAAATTTTTTGGTCAATATTTTTAATA
* * * * *
26406605 AAATCACCACTTATGACTGTATTTTTTTATTAATAATGTATTTTTTAT-TTTTGAAAAA
63 AAATCACCACTTGTGATTTTATTATTTTATTAATAA--TATTTTTTATATTTTGAAAAT
* * * *
26406663 TTCTAAAAAAATTATAACATTTTTAGAATATTTT-AGAAATTTTTTGGCATAAATATTTTTAATA
1 TTCTAAAATATTTATAACA-TTTTAGAATATTTTAAAAAATTTTTTGG--TCAATATTTTTAATA
* * ** *
26406727 AAATCGCCACTTGTAATTTTATT-TTTTGGTAATAATATTTTCTTTTTTATGTTTGAAAAGT
63 AAATCACCACTTGTGATTTTATTATTTTATTAATAATA--TT-TTTTATAT-TTTGAAAA-T
* * * ** *
26406788 TT-TAAAATATTTCTAATATATTTAGAATATTCTAGAAAAAATTTTTTACATCAATATTTCTAAT
1 TTCTAAAATATTTATAACAT-TTTAGAATATT-T-TAAAAAATTTTTT-GGTCAATATTTTTAAT
* *
26406852 AAAATCACCACTTGTGATTTTATTAATTTT-TTAATAATATTTTTTATATACTTGAAATT
62 AAAATCACCACTTGTGATTTTATT-ATTTTATTAATAATATTTTTTATAT-TTTGAAAAT
26406911 TTCTAAAATATTTATAACACTTTTAGAATATTTTAAAAAATTTCTTTGTGTCAATATTTTTAATA
1 TTCTAAAATATTTATAACA-TTTTAGAATATTTTAAAAAATTT-TTTG-GTCAATATTTTTAATA
* * *
26406976 AAATCACCACTTGTGATTTTATAATTAT-TTGATAATATTTT
63 AAATCACCACTTGTGATTTTATTATTTTATTAATAATATTTT
26407017 ATGATTTTTT
Statistics
Matches: 286, Mismatches: 46, Indels: 43
0.76 0.12 0.11
Matches are distributed among these distances:
119 2 0.01
120 23 0.08
121 26 0.09
122 59 0.21
123 45 0.16
124 69 0.24
125 6 0.02
126 34 0.12
127 18 0.06
128 4 0.01
ACGTcount: A:0.36, C:0.09, G:0.06, T:0.49
Consensus pattern (119 bp):
TTCTAAAATATTTATAACATTTTAGAATATTTTAAAAAATTTTTTGGTCAATATTTTTAATAAAA
TCACCACTTGTGATTTTATTATTTTATTAATAATATTTTTTATATTTTGAAAAT
Found at i:26407102 original size:20 final size:19
Alignment explanation
Indices: 26407049--26407102 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 19
26407039 ATTAATCTAA
*
26407049 ATTTTATATTTATTATTAGT
1 ATTTTGTATTTATT-TTAGT
26407069 ATTTTGT-TTT-TTTTA-T
1 ATTTTGTATTTATTTTAGT
26407085 CATTATTGTATTTATTTT
1 -ATT-TTGTATTTATTTT
26407103 CACATATCCT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
16 1 0.03
17 6 0.21
18 6 0.21
19 6 0.21
20 10 0.34
ACGTcount: A:0.22, C:0.02, G:0.06, T:0.70
Consensus pattern (19 bp):
ATTTTGTATTTATTTTAGT
Found at i:26407695 original size:3 final size:3
Alignment explanation
Indices: 26407687--26407711 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
26407677 AGAAATAAGA
26407687 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
26407712 CTATAAAATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:26408098 original size:2 final size:2
Alignment explanation
Indices: 26408091--26408132 Score: 57
Period size: 2 Copynumber: 21.0 Consensus size: 2
26408081 AAAATTTATG
* * *
26408091 AT AT AT AT AT AT AT AT AT AT GT AT GT AT AT AT TT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26408133 TCTTAAAATT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.43, C:0.00, G:0.05, T:0.52
Consensus pattern (2 bp):
AT
Found at i:26408652 original size:2 final size:2
Alignment explanation
Indices: 26408645--26408676 Score: 55
Period size: 2 Copynumber: 15.5 Consensus size: 2
26408635 ATTATGTATG
26408645 TA TA TA TA TA TA TA TA TA TA TA TA TGA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T-A TA TA T
26408677 TAATATGTAG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
2 27 0.93
3 2 0.07
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (2 bp):
TA
Found at i:26411292 original size:20 final size:20
Alignment explanation
Indices: 26411269--26411312 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
26411259 ACTATCAAAT
*
26411269 TTTTTGATTTCCT-TTCTGGG
1 TTTTTGA-TTACTGTTCTGGG
26411289 TTTTTGATTACTGTTCTGGG
1 TTTTTGATTACTGTTCTGGG
26411309 TTTT
1 TTTT
26411313 CTTATTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.18
20 18 0.82
ACGTcount: A:0.07, C:0.11, G:0.20, T:0.61
Consensus pattern (20 bp):
TTTTTGATTACTGTTCTGGG
Found at i:26418835 original size:23 final size:23
Alignment explanation
Indices: 26418800--26418843 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
26418790 TAATTAAATT
* * *
26418800 ATAATTTATTAATTATTTATTTA
1 ATAATATACTAATTAATTATTTA
26418823 ATAATATACTAATTAATTATT
1 ATAATATACTAATTAATTATT
26418844 CAATTGATTA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 18 1.00
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (23 bp):
ATAATATACTAATTAATTATTTA
Found at i:26420581 original size:3 final size:3
Alignment explanation
Indices: 26420573--26420611 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
26420563 AAAGAGATAG
26420573 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
1 AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA AGA
26420612 GAGAGAAAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AGA
Found at i:26420618 original size:9 final size:10
Alignment explanation
Indices: 26420571--26420615 Score: 60
Period size: 9 Copynumber: 4.7 Consensus size: 10
26420561 CCAAAGAGAT
26420571 AGAGAAGAAGA
1 AGAG-AGAAGA
26420582 AGA-AGAAGA
1 AGAGAGAAGA
26420591 AGA-AGAAGA
1 AGAGAGAAGA
26420600 AGA-AGAAGA
1 AGAGAGAAGA
26420609 AGAGAGA
1 AGAGAGA
26420616 GAAAATTATA
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
9 27 0.82
10 3 0.09
11 3 0.09
ACGTcount: A:0.64, C:0.00, G:0.36, T:0.00
Consensus pattern (10 bp):
AGAGAGAAGA
Found at i:26421983 original size:58 final size:58
Alignment explanation
Indices: 26421897--26422021 Score: 214
Period size: 58 Copynumber: 2.1 Consensus size: 58
26421887 CAATAATTAA
*
26421897 TGGTTTGTTCTGCAGTACCTGTGGAATTAATTACATCACATGTCTGCCTGCTTGTAATT
1 TGGTTT-TTCTGCAGTACCTATGGAATTAATTACATCACATGTCTGCCTGCTTGTAATT
*
26421956 TGGTTTTTCTGCAGTGCCTATGGAATTAATTACATCACATGTCTGCCTGCTTGTAATT
1 TGGTTTTTCTGCAGTACCTATGGAATTAATTACATCACATGTCTGCCTGCTTGTAATT
*
26422014 AGGTTTTT
1 TGGTTTTT
26422022 GAATGGAATC
Statistics
Matches: 63, Mismatches: 3, Indels: 1
0.94 0.04 0.01
Matches are distributed among these distances:
58 57 0.90
59 6 0.10
ACGTcount: A:0.20, C:0.18, G:0.20, T:0.42
Consensus pattern (58 bp):
TGGTTTTTCTGCAGTACCTATGGAATTAATTACATCACATGTCTGCCTGCTTGTAATT
Found at i:26424188 original size:19 final size:19
Alignment explanation
Indices: 26424159--26424203 Score: 72
Period size: 19 Copynumber: 2.4 Consensus size: 19
26424149 GTTTAAACAA
*
26424159 TCTTATATATCACATTTAT
1 TCTTGTATATCACATTTAT
*
26424178 TTTTGTATATCACATTTAT
1 TCTTGTATATCACATTTAT
26424197 TCTTGTA
1 TCTTGTA
26424204 AAGGCATAAG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.27, C:0.13, G:0.04, T:0.56
Consensus pattern (19 bp):
TCTTGTATATCACATTTAT
Found at i:26424377 original size:26 final size:26
Alignment explanation
Indices: 26424348--26424412 Score: 130
Period size: 26 Copynumber: 2.5 Consensus size: 26
26424338 TTTACAATTT
26424348 TCTTTAATCTCATCATTCTCAAAGCC
1 TCTTTAATCTCATCATTCTCAAAGCC
26424374 TCTTTAATCTCATCATTCTCAAAGCC
1 TCTTTAATCTCATCATTCTCAAAGCC
26424400 TCTTTAATCTCAT
1 TCTTTAATCTCAT
26424413 AACTTTTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 39 1.00
ACGTcount: A:0.26, C:0.29, G:0.03, T:0.42
Consensus pattern (26 bp):
TCTTTAATCTCATCATTCTCAAAGCC
Found at i:26426665 original size:92 final size:92
Alignment explanation
Indices: 26426508--26426690 Score: 348
Period size: 92 Copynumber: 2.0 Consensus size: 92
26426498 TATGAAGTAT
26426508 TATAAGTACTTTATGTATAGACATACTATTAAATATAATCAAAAGTATTTATGAATTGAGTTAAA
1 TATAAGTACTTTATGTATAGACATACTATTAAATATAATCAAAAGTATTTATGAATTGAGTTAAA
26426573 TCAAATTAAAATTAATTAAGTGTTTAC
66 TCAAATTAAAATTAATTAAGTGTTTAC
*
26426600 TATAAGTACTTTATGTATAGATATACTATTAAATATAATCAAAAGTATTTATGAATTGAGTTAAA
1 TATAAGTACTTTATGTATAGACATACTATTAAATATAATCAAAAGTATTTATGAATTGAGTTAAA
*
26426665 TCAAATTAAAATTAATTAAGTTTTTA
66 TCAAATTAAAATTAATTAAGTGTTTA
26426691 TTTAAAATTC
Statistics
Matches: 89, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
92 89 1.00
ACGTcount: A:0.45, C:0.05, G:0.09, T:0.40
Consensus pattern (92 bp):
TATAAGTACTTTATGTATAGACATACTATTAAATATAATCAAAAGTATTTATGAATTGAGTTAAA
TCAAATTAAAATTAATTAAGTGTTTAC
Found at i:26426925 original size:13 final size:13
Alignment explanation
Indices: 26426904--26426949 Score: 60
Period size: 13 Copynumber: 3.7 Consensus size: 13
26426894 CAGCAAGACC
*
26426904 AAAATTTTTAAAT
1 AAAAATTTTAAAT
26426917 AAAAATTTTAAAT
1 AAAAATTTTAAAT
*
26426930 TAAAA--TTAAAT
1 AAAAATTTTAAAT
26426941 AAAAATTTT
1 AAAAATTTT
26426950 TATTAATTAA
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
11 10 0.36
13 18 0.64
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
AAAAATTTTAAAT
Found at i:26427987 original size:4 final size:4
Alignment explanation
Indices: 26427978--26428007 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
26427968 CCCTCAAGTC
26427978 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TT
1 TTCT TTCT TTCT TTCT TTCT TTCT TTCT TT
26428008 GTTTACATAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (4 bp):
TTCT
Found at i:26428373 original size:25 final size:25
Alignment explanation
Indices: 26428345--26428395 Score: 75
Period size: 25 Copynumber: 2.0 Consensus size: 25
26428335 AATGCCACCC
*
26428345 TTTTCTTGTTCTTTATTACTACATTT
1 TTTTCTTGAT-TTTATTACTACATTT
*
26428371 TTTTCTTGATTTTATTACTATATTT
1 TTTTCTTGATTTTATTACTACATTT
26428396 CATTACATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 14 0.61
26 9 0.39
ACGTcount: A:0.18, C:0.12, G:0.04, T:0.67
Consensus pattern (25 bp):
TTTTCTTGATTTTATTACTACATTT
Found at i:26430949 original size:16 final size:17
Alignment explanation
Indices: 26430928--26430964 Score: 67
Period size: 16 Copynumber: 2.2 Consensus size: 17
26430918 GGTTACTCTT
26430928 CATTTCCTTAAAGTGA-
1 CATTTCCTTAAAGTGAG
26430944 CATTTCCTTAAAGTGAG
1 CATTTCCTTAAAGTGAG
26430961 CATT
1 CATT
26430965 AGAATGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 16 0.80
17 4 0.20
ACGTcount: A:0.30, C:0.19, G:0.14, T:0.38
Consensus pattern (17 bp):
CATTTCCTTAAAGTGAG
Found at i:26434976 original size:36 final size:34
Alignment explanation
Indices: 26434919--26434998 Score: 92
Period size: 36 Copynumber: 2.3 Consensus size: 34
26434909 CTTATTTATT
*
26434919 TTTAATTTTATCGTTAGTAATTAATTT-TACGAT-A
1 TTTAATTTTATCGTTAATAATTAATTTATA--ATAA
*
26434953 TTTAATTTTATCATTATAATAATTAATTTATAATAA
1 TTTAATTTTATC-GT-TAATAATTAATTTATAATAA
26434989 TTTAATTTTA
1 TTTAATTTTA
26434999 AAATATTTAA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
34 12 0.30
35 3 0.08
36 23 0.57
37 2 0.05
ACGTcount: A:0.38, C:0.04, G:0.04, T:0.55
Consensus pattern (34 bp):
TTTAATTTTATCGTTAATAATTAATTTATAATAA
Found at i:26434983 original size:14 final size:14
Alignment explanation
Indices: 26434966--26435011 Score: 56
Period size: 14 Copynumber: 3.1 Consensus size: 14
26434956 AATTTTATCA
26434966 TTATAATAATTAAT
1 TTATAATAATTAAT
26434980 TTATAATAATTTAATT
1 TTATAATAA-TTAA-T
* *
26434996 TTAAAATATTTAAT
1 TTATAATAATTAAT
26435010 TT
1 TT
26435012 TTATCATTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 12 0.43
15 8 0.29
16 8 0.29
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (14 bp):
TTATAATAATTAAT
Found at i:26434995 original size:15 final size:15
Alignment explanation
Indices: 26434966--26435011 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
26434956 AATTTTATCA
26434966 TTATAATAA-TTAAT
1 TTATAATAATTTAAT
26434980 TTATAATAATTTAAT
1 TTATAATAATTTAAT
*
26434995 TT-TAAAATATTTAAT
1 TTATAATA-ATTTAAT
26435010 TT
1 TT
26435012 TTATCATTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 13 0.45
15 16 0.55
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (15 bp):
TTATAATAATTTAAT
Found at i:26435540 original size:4 final size:4
Alignment explanation
Indices: 26435531--26435572 Score: 57
Period size: 4 Copynumber: 10.2 Consensus size: 4
26435521 TTAATTGAAT
* *
26435531 ATAA ATAA ATAA ATAA ATAA ATAA TTATA ATAA AAAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA ATA-A ATAA ATAA ATAA A
26435573 ATTGAAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
4 30 0.91
5 3 0.09
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAA
Found at i:26436122 original size:12 final size:12
Alignment explanation
Indices: 26436098--26436131 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
26436088 ACTTATTTAA
26436098 TAATAAAAATTT
1 TAATAAAAATTT
* *
26436110 TATTAAAATTTT
1 TAATAAAAATTT
26436122 TAATAAAAAT
1 TAATAAAAAT
26436132 ACCTATCTTA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (12 bp):
TAATAAAAATTT
Found at i:26440188 original size:16 final size:14
Alignment explanation
Indices: 26440169--26440227 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 14
26440159 AAATATTAAA
26440169 TATATTAAAATTTTAT
1 TATA-TAAAATTTT-T
26440185 TATATATAAA-TTTT
1 TATATA-AAATTTTT
*
26440199 TATATAATATTTTT
1 TATATAAAATTTTT
*
26440213 AATAATAAAATTTTT
1 TAT-ATAAAATTTTT
26440228 ATTATAATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
13 2 0.05
14 13 0.35
15 15 0.41
16 7 0.19
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (14 bp):
TATATAAAATTTTT
Found at i:26440191 original size:18 final size:17
Alignment explanation
Indices: 26440168--26440201 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
26440158 TAAATATTAA
26440168 ATATATTAAAATTTTATT
1 ATATA-TAAAATTTTATT
*
26440186 ATATATAAATTTTTAT
1 ATATATAAAATTTTAT
26440202 ATAATATTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (17 bp):
ATATATAAAATTTTATT
Found at i:26440203 original size:14 final size:14
Alignment explanation
Indices: 26440184--26440234 Score: 54
Period size: 13 Copynumber: 3.7 Consensus size: 14
26440174 TAAAATTTTA
26440184 TTATATATAAATTT
1 TTATATATAAATTT
*
26440198 TTATATA-ATATTT
1 TTATATATAAATTT
26440211 TTA-ATAATAAAATTT
1 TTATAT-AT-AAATTT
26440226 TTAT-TATAA
1 TTATATATAA
26440235 TTTACTTTAT
Statistics
Matches: 31, Mismatches: 2, Indels: 9
0.74 0.05 0.21
Matches are distributed among these distances:
12 2 0.06
13 11 0.35
14 9 0.29
15 9 0.29
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (14 bp):
TTATATATAAATTT
Found at i:26440204 original size:12 final size:12
Alignment explanation
Indices: 26440187--26440234 Score: 51
Period size: 15 Copynumber: 3.6 Consensus size: 12
26440177 AATTTTATTA
26440187 TATATAAATTTT
1 TATATAAATTTT
26440199 TATATAATATTTT
1 TATATAA-ATTTT
26440212 TAATAATAAAATTTT
1 T-AT-AT-AAATTTT
26440227 TATTATAA
1 TA-TATAA
26440235 TTTACTTTAT
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
12 7 0.23
13 8 0.26
14 5 0.16
15 9 0.29
16 2 0.06
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (12 bp):
TATATAAATTTT
Found at i:26440247 original size:17 final size:17
Alignment explanation
Indices: 26440222--26440264 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
26440212 TAATAATAAA
*
26440222 ATTTTTATTATAATT-T
1 ATTTATATTATAATTGT
*
26440238 ACTTTATATTATCATTGT
1 A-TTTATATTATAATTGT
26440256 ATTTATATT
1 ATTTATATT
26440265 TAAATATATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 1 0.04
17 20 0.87
18 2 0.09
ACGTcount: A:0.30, C:0.05, G:0.02, T:0.63
Consensus pattern (17 bp):
ATTTATATTATAATTGT
Found at i:26447189 original size:11 final size:11
Alignment explanation
Indices: 26447175--26447204 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
26447165 TTTTATATTA
26447175 ATAATATAAAT
1 ATAATATAAAT
26447186 ATAATATAAAT
1 ATAATATAAAT
26447197 ATTAATAT
1 A-TAATAT
26447205 TAGTCCTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.67
12 6 0.33
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (11 bp):
ATAATATAAAT
Found at i:26462272 original size:19 final size:20
Alignment explanation
Indices: 26462253--26462290 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26462243 ATTTCAATTT
26462253 CGATTTTGATTTT-ATTTTTC
1 CGATTTT-ATTTTCATTTTTC
*
26462273 CTATTTTATTTTCATTTT
1 CGATTTTATTTTCATTTT
26462291 ATTATATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 5 0.31
20 11 0.69
ACGTcount: A:0.16, C:0.11, G:0.05, T:0.68
Consensus pattern (20 bp):
CGATTTTATTTTCATTTTTC
Found at i:26472633 original size:29 final size:29
Alignment explanation
Indices: 26472600--26472709 Score: 85
Period size: 29 Copynumber: 3.4 Consensus size: 29
26472590 GTATAAAGAA
26472600 AAATTATAGAATAAATAAAATAAATAAAT
1 AAATTATAGAATAAATAAAATAAATAAAT
* ** *
26472629 AAATTATAGAATCACAAGGGCAATTTAAAGGTATAAAGAA
1 AAATTATAGAAT-A-AA---TAAAAT-AA---AT-AA-AT
26472669 AAATTATAGAATAAATAAAATAAATAAAT
1 AAATTATAGAATAAATAAAATAAATAAAT
26472698 AAATTATAGAAT
1 AAATTATAGAAT
26472710 CACAAGCAAC
Statistics
Matches: 62, Mismatches: 8, Indels: 22
0.67 0.09 0.24
Matches are distributed among these distances:
29 25 0.40
30 3 0.05
31 4 0.06
34 5 0.08
35 5 0.08
38 4 0.06
39 3 0.05
40 13 0.21
ACGTcount: A:0.62, C:0.03, G:0.09, T:0.26
Consensus pattern (29 bp):
AAATTATAGAATAAATAAAATAAATAAAT
Found at i:26472655 original size:69 final size:69
Alignment explanation
Indices: 26472575--26472715 Score: 282
Period size: 69 Copynumber: 2.0 Consensus size: 69
26472565 TAGAAGGTTT
26472575 AAGGGCAATTTAAAGGTATAAAGAAAAATTATAGAATAAATAAAATAAATAAATAAATTATAGAA
1 AAGGGCAATTTAAAGGTATAAAGAAAAATTATAGAATAAATAAAATAAATAAATAAATTATAGAA
26472640 TCAC
66 TCAC
26472644 AAGGGCAATTTAAAGGTATAAAGAAAAATTATAGAATAAATAAAATAAATAAATAAATTATAGAA
1 AAGGGCAATTTAAAGGTATAAAGAAAAATTATAGAATAAATAAAATAAATAAATAAATTATAGAA
26472709 TCAC
66 TCAC
26472713 AAG
1 AAG
26472716 CAACACAAAT
Statistics
Matches: 72, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
69 72 1.00
ACGTcount: A:0.60, C:0.04, G:0.12, T:0.24
Consensus pattern (69 bp):
AAGGGCAATTTAAAGGTATAAAGAAAAATTATAGAATAAATAAAATAAATAAATAAATTATAGAA
TCAC
Found at i:26472740 original size:69 final size:69
Alignment explanation
Indices: 26472592--26472747 Score: 215
Period size: 69 Copynumber: 2.2 Consensus size: 69
26472582 ATTTAAAGGT
** **
26472592 ATAAAGAAAAATTATAGAATAAATAAAATAAATAAATAAATTATAGAATCACAAGGGCAATTTAA
1 ATAAAGAAAAATTATAGAATAAATAAAATAAATAAATAAATTATAGAATCACAAGAACAAAATAA
**
26472657 AGGT
66 AGAA
26472661 ATAAAGAAAAATTATAGAATAAATAAAATAAATAAATAAATTATAGAATCACAAGCAACACAAAT
1 ATAAAGAAAAATTATAGAATAAATAAAATAAATAAATAAATTATAGAATCACAAG-AACA-AAAT
26472726 AAA-AA
64 AAAGAA
*
26472731 ATAAAAAAAAAATTATA
1 AT-AAAGAAAAATTATA
26472748 ATATCACAAG
Statistics
Matches: 77, Mismatches: 7, Indels: 4
0.88 0.08 0.05
Matches are distributed among these distances:
69 55 0.71
70 4 0.05
71 18 0.23
ACGTcount: A:0.65, C:0.05, G:0.08, T:0.22
Consensus pattern (69 bp):
ATAAAGAAAAATTATAGAATAAATAAAATAAATAAATAAATTATAGAATCACAAGAACAAAATAA
AGAA
Found at i:26477113 original size:5 final size:5
Alignment explanation
Indices: 26477090--26477271 Score: 56
Period size: 5 Copynumber: 35.0 Consensus size: 5
26477080 AACAACAAAG
* *
26477090 TAAAA TTAAA TAAAGA TAAAA TAAGGA TAAACAA TATAAA TAAAA TAAAGA
1 TAAAA TAAAA TAAA-A TAAAA TAA-AA T-AA-AA TA-AAA TAAAA TAAA-A
* * * **
26477141 T--AA TGAAA TAAAGA T-AAA TAAGA T-AAA TAAAG T-AAA GCAAA TAAAA
1 TAAAA TAAAA TAAA-A TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA TAAAA
* * * *
26477187 TTAAGA TAAACA TAAGA TAGATA TAAGA TAAAA TAAACA TAATAA TAAAGA
1 -TAAAA TAAA-A TAAAA TA-AAA TAAAA TAAAA TAAA-A TAA-AA TAAA-A
**
26477238 T--AA TAAAA TATAAA TGGAA -AAAA TAAAA GTAAAA
1 TAAAA TAAAA TA-AAA TAAAA TAAAA TAAAA -TAAAA
26477272 ATATGAAACT
Statistics
Matches: 132, Mismatches: 23, Indels: 43
0.67 0.12 0.22
Matches are distributed among these distances:
3 4 0.03
4 11 0.08
5 64 0.48
6 47 0.36
7 6 0.05
ACGTcount: A:0.67, C:0.02, G:0.09, T:0.21
Consensus pattern (5 bp):
TAAAA
Found at i:26477125 original size:24 final size:22
Alignment explanation
Indices: 26477097--26477240 Score: 97
Period size: 24 Copynumber: 6.5 Consensus size: 22
26477087 AAGTAAAATT
26477097 AAATAAAGATAAAATAAGGATAA
1 AAATAAAGATAAAATAA-GATAA
26477120 ACAATATAA-ATAAAATAAAGATAA
1 A-AATA-AAGATAAAAT-AAGATAA
26477144 TGAAATAAAGAT-AAATAAGAT--
1 --AAATAAAGATAAAATAAGATAA
**
26477165 AAATAAAG-TAAAGCAA-AT-A
1 AAATAAAGATAAAATAAGATAA
* *
26477184 AAATTAAGATAAACATAAGATAG
1 AAATAAAGATAAA-ATAAGATAA
* *
26477207 ATAT-AAGATAAAATAAACATAA
1 AAATAAAGATAAAAT-AAGATAA
*
26477229 TAATAAAGATAA
1 AAATAAAGATAA
26477241 TAAAATATAA
Statistics
Matches: 96, Mismatches: 11, Indels: 28
0.71 0.08 0.21
Matches are distributed among these distances:
18 3 0.03
19 19 0.20
20 4 0.04
21 4 0.04
22 17 0.18
23 16 0.17
24 22 0.23
25 10 0.10
26 1 0.01
ACGTcount: A:0.67, C:0.03, G:0.10, T:0.21
Consensus pattern (22 bp):
AAATAAAGATAAAATAAGATAA
Found at i:26477137 original size:9 final size:9
Alignment explanation
Indices: 26477090--26477176 Score: 57
Period size: 9 Copynumber: 9.0 Consensus size: 9
26477080 AACAACAAAG
26477090 TAAAATTAAA
1 TAAAA-TAAA
26477100 TAAAGATAAAA
1 TAAA-AT-AAA
*
26477111 TAAGGATAAA
1 TAA-AATAAA
* *
26477121 CAATATAAA
1 TAAAATAAA
26477130 TAAAATAAA
1 TAAAATAAA
* *
26477139 GATAATGAAA
1 TAAAAT-AAA
26477149 TAAAGATAAA
1 TAAA-ATAAA
*
26477159 TAAGATAAA
1 TAAAATAAA
*
26477168 TAAAGTAAA
1 TAAAATAAA
26477177 GCAAATAAAA
Statistics
Matches: 60, Mismatches: 12, Indels: 11
0.72 0.14 0.13
Matches are distributed among these distances:
9 28 0.47
10 21 0.35
11 11 0.18
ACGTcount: A:0.68, C:0.01, G:0.09, T:0.22
Consensus pattern (9 bp):
TAAAATAAA
Found at i:26477158 original size:38 final size:37
Alignment explanation
Indices: 26477092--26477198 Score: 112
Period size: 38 Copynumber: 2.9 Consensus size: 37
26477082 CAACAAAGTA
* * *
26477092 AAATTAAATAAAGAT-A-AAATAAGGATAAACAATAT
1 AAATAAAATAAAGATAATAAATAAAGATAAACAAGAT
*
26477127 AAATAAAATAAAGATAATGAAATAAAGATAAATAAGAT
1 AAATAAAATAAAGATAAT-AAATAAAGATAAACAAGAT
* *
26477165 AAATAAAGTAAAGCA-AATAAAATTAAGATAAACA
1 AAATAAAATAAAG-ATAAT-AAATAAAGATAAACA
26477199 TAAGATAGAT
Statistics
Matches: 60, Mismatches: 8, Indels: 5
0.82 0.11 0.07
Matches are distributed among these distances:
35 14 0.23
36 1 0.02
38 44 0.73
39 1 0.02
ACGTcount: A:0.67, C:0.03, G:0.09, T:0.21
Consensus pattern (37 bp):
AAATAAAATAAAGATAATAAATAAAGATAAACAAGAT
Found at i:26477234 original size:22 final size:22
Alignment explanation
Indices: 26477188--26477240 Score: 56
Period size: 22 Copynumber: 2.4 Consensus size: 22
26477178 CAAATAAAAT
*
26477188 TAAGATAAACATAAGATAGATA
1 TAAGATAAACATAACATAGATA
26477210 TAAGATAAA-ATAAACATA-ATAA
1 TAAGATAAACAT-AACATAGAT-A
26477232 TAAAGATAA
1 T-AAGATAA
26477241 TAAAATATAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 4 0.15
22 16 0.59
23 7 0.26
ACGTcount: A:0.64, C:0.04, G:0.09, T:0.23
Consensus pattern (22 bp):
TAAGATAAACATAACATAGATA
Found at i:26480083 original size:13 final size:11
Alignment explanation
Indices: 26480057--26480110 Score: 54
Period size: 13 Copynumber: 4.5 Consensus size: 11
26480047 AATATATATG
26480057 ATAAAATGAAA
1 ATAAAATGAAA
26480068 ATAAAATAGAAAA
1 ATAAAAT-G-AAA
*
26480081 ATAAAATCAAA
1 ATAAAATGAAA
*
26480092 ATCAAAATCAAAA
1 AT-AAAAT-GAAA
26480105 ATAAAA
1 ATAAAA
26480111 AACAAAATGA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
11 12 0.32
12 10 0.27
13 15 0.41
ACGTcount: A:0.74, C:0.06, G:0.04, T:0.17
Consensus pattern (11 bp):
ATAAAATGAAA
Found at i:26480092 original size:12 final size:12
Alignment explanation
Indices: 26480065--26480110 Score: 58
Period size: 13 Copynumber: 3.8 Consensus size: 12
26480055 TGATAAAATG
*
26480065 AAAATAAAATAGA
1 AAAATAAAAT-CA
26480078 AAAATAAAATC-
1 AAAATAAAATCA
26480089 AAAATCAAAATCA
1 AAAAT-AAAATCA
26480102 AAAATAAAA
1 AAAATAAAA
26480111 AACAAAATGA
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 15 0.50
ACGTcount: A:0.76, C:0.07, G:0.02, T:0.15
Consensus pattern (12 bp):
AAAATAAAATCA
Found at i:26480105 original size:19 final size:19
Alignment explanation
Indices: 26480083--26480132 Score: 64
Period size: 19 Copynumber: 2.6 Consensus size: 19
26480073 ATAGAAAAAT
* *
26480083 AAAATCAAAATCAAAATCA
1 AAAATAAAAAACAAAATCA
*
26480102 AAAATAAAAAACAAAATGA
1 AAAATAAAAAACAAAATCA
*
26480121 AAAAGAAAAAAC
1 AAAATAAAAAAC
26480133 CTGCGATTGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.76, C:0.10, G:0.04, T:0.10
Consensus pattern (19 bp):
AAAATAAAAAACAAAATCA
Found at i:26481431 original size:46 final size:46
Alignment explanation
Indices: 26481381--26481469 Score: 126
Period size: 46 Copynumber: 1.9 Consensus size: 46
26481371 GGTATGCAAT
*
26481381 TAAGAAAAGAGCTT-CTCTAAATAGAGGTTAAACAACTTTAAAAAAA
1 TAAGAAAAG-GCTTCCTCTAAATAGAGGCTAAACAACTTTAAAAAAA
* * *
26481427 TAAGAAATGGGTTCCTTTAAATAGAGGCTAAACAACTTTAAAA
1 TAAGAAAAGGCTTCCTCTAAATAGAGGCTAAACAACTTTAAAA
26481470 TGGGAAATGG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
45 3 0.08
46 35 0.92
ACGTcount: A:0.48, C:0.11, G:0.15, T:0.26
Consensus pattern (46 bp):
TAAGAAAAGGCTTCCTCTAAATAGAGGCTAAACAACTTTAAAAAAA
Found at i:26481486 original size:43 final size:43
Alignment explanation
Indices: 26481398--26481598 Score: 167
Period size: 43 Copynumber: 4.7 Consensus size: 43
26481388 AGAGCTTCTC
* * *
26481398 TAAATAGAGGTTAAACAACTTTAAAAAAATAAGAAATGGGTTCCTT
1 TAAATAGAGGCTAAACAACTTT---AAAATAGGAAATGGGCTCCTT
*
26481444 TAAATAGAGGCTAAACAACTTTAAAATGGGAAATGGGCTCCTT
1 TAAATAGAGGCTAAACAACTTTAAAATAGGAAATGGGCTCCTT
* * * * ** *
26481487 T-ATTCAAAGGCTAAGCAACTTTAAAATAGGAAATGGTCTTATC
1 TAAAT-AGAGGCTAAACAACTTTAAAATAGGAAATGGGCTCCTT
* * * ** *
26481530 TAAACAGAGGCTAAATAACTTTAAAATAAGAAATAAGCTTCTAT
1 TAAATAGAGGCTAAACAACTTTAAAATAGGAAATGGGCTCCT-T
*
26481574 T---TAGAGGCTAAATAACTTTAAAATA
1 TAAATAGAGGCTAAACAACTTTAAAATA
26481599 ACCTTCTAAC
Statistics
Matches: 128, Mismatches: 24, Indels: 11
0.79 0.15 0.07
Matches are distributed among these distances:
41 23 0.18
42 2 0.02
43 80 0.62
44 2 0.02
46 21 0.16
ACGTcount: A:0.45, C:0.11, G:0.15, T:0.28
Consensus pattern (43 bp):
TAAATAGAGGCTAAACAACTTTAAAATAGGAAATGGGCTCCTT
Found at i:26482547 original size:21 final size:21
Alignment explanation
Indices: 26482500--26482546 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
26482490 TTGTAAACAC
26482500 TATTTTATTTATTATTATTAA
1 TATTTTATTTATTATTATTAA
*
26482521 TATTTTATTTATTATT-TTAT
1 TATTTTATTTATTATTATTAA
26482541 TATTTT
1 TATTTT
26482547 TCTTTTTTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
20 9 0.36
21 16 0.64
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (21 bp):
TATTTTATTTATTATTATTAA
Found at i:26484139 original size:12 final size:12
Alignment explanation
Indices: 26484103--26484133 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
26484093 TTAAATTAAA
26484103 AATAAAA-AATT
1 AATAAAATAATT
26484114 AATAAAATAATT
1 AATAAAATAATT
26484126 AATAAAAT
1 AATAAAAT
26484134 TTTTAAAAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 7 0.37
12 12 0.63
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (12 bp):
AATAAAATAATT
Found at i:26485814 original size:13 final size:14
Alignment explanation
Indices: 26485791--26485820 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
26485781 ATTTCCTAGG
26485791 TTTTTGTCTTTTTT
1 TTTTTGTCTTTTTT
26485805 TTTTTG-CTTTTTT
1 TTTTTGTCTTTTTT
26485818 TTT
1 TTT
26485821 AATTTTTTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.62
14 6 0.38
ACGTcount: A:0.00, C:0.07, G:0.07, T:0.87
Consensus pattern (14 bp):
TTTTTGTCTTTTTT
Found at i:26490954 original size:20 final size:20
Alignment explanation
Indices: 26490929--26490968 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
26490919 TGTGCATGGG
26490929 ATGCATGTGCATGAAATAGA
1 ATGCATGTGCATGAAATAGA
26490949 ATGCATGTGCATGAAATAGA
1 ATGCATGTGCATGAAATAGA
26490969 TATGGATGAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.25
Consensus pattern (20 bp):
ATGCATGTGCATGAAATAGA
Found at i:26493859 original size:19 final size:20
Alignment explanation
Indices: 26493826--26493867 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
26493816 TTTTTCTTTC
*
26493826 TTTTTTTCATTCCCTTCTCT
1 TTTTTTTCATCCCCTTCTCT
*
26493846 TTTTTTTC-TCCCCTTTTCT
1 TTTTTTTCATCCCCTTCTCT
26493865 TTT
1 TTT
26493868 CTAGTTTGGT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.02, C:0.29, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTTTTCATCCCCTTCTCT
Found at i:26493917 original size:12 final size:12
Alignment explanation
Indices: 26493897--26493937 Score: 57
Period size: 12 Copynumber: 3.4 Consensus size: 12
26493887 CAAGCTATTG
26493897 TTTTT-TCTTTT
1 TTTTTCTCTTTT
26493908 TTTTTCTCTTTT
1 TTTTTCTCTTTT
*
26493920 TTTTTCACTTTT
1 TTTTTCTCTTTT
26493932 TCTTTT
1 T-TTTT
26493938 AAACTGAAAC
Statistics
Matches: 27, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
11 5 0.19
12 18 0.67
13 4 0.15
ACGTcount: A:0.02, C:0.15, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTCTCTTTT
Found at i:26495078 original size:17 final size:17
Alignment explanation
Indices: 26495051--26495093 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
26495041 TTAATTCAAT
*
26495051 AAATAAAAACAATAACAA
1 AAAT-AAAACAACAACAA
*
26495069 AAATAAAACAACAATAA
1 AAATAAAACAACAACAA
26495086 AAATAAAA
1 AAATAAAA
26495094 TTGGATTTTG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 19 0.83
18 4 0.17
ACGTcount: A:0.79, C:0.09, G:0.00, T:0.12
Consensus pattern (17 bp):
AAATAAAACAACAACAA
Found at i:26504725 original size:48 final size:47
Alignment explanation
Indices: 26504668--26504764 Score: 185
Period size: 48 Copynumber: 2.0 Consensus size: 47
26504658 TGGGTTAAAA
26504668 AATACCAAGTTAAAATCAAGCCTTGTTTAAATATATTGATCTTATAG
1 AATACCAAGTTAAAATCAAGCCTTGTTTAAATATATTGATCTTATAG
26504715 AATACCCAAGTTAAAATCAAGCCTTGTTTAAATATATTGATCTTATAG
1 AATA-CCAAGTTAAAATCAAGCCTTGTTTAAATATATTGATCTTATAG
26504763 AA
1 AA
26504765 ATTAATCTCT
Statistics
Matches: 49, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 4 0.08
48 45 0.92
ACGTcount: A:0.41, C:0.13, G:0.10, T:0.35
Consensus pattern (47 bp):
AATACCAAGTTAAAATCAAGCCTTGTTTAAATATATTGATCTTATAG
Found at i:26505555 original size:54 final size:54
Alignment explanation
Indices: 26505377--26505578 Score: 183
Period size: 54 Copynumber: 3.7 Consensus size: 54
26505367 GTTTTAATGT
* * * * * *
26505377 AAGAAATAGAAGTGCTAGGGGCACATTGAA-TGTTTTGGCATAGAGCCTTAACAC
1 AAGAAATAAAAGTGCTAGGAGCACGTT-AAGCGTGTTGGCATGGAGCCTTAACAC
* * * * * * * * *
26505431 AAGAAATAGAGGTGCCAGGAACATGTTAAGTGTGTTGGCATGAACCCTTAACAT
1 AAGAAATAAAAGTGCTAGGAGCACGTTAAGCGTGTTGGCATGGAGCCTTAACAC
**
26505485 AAGAAATAAATA-TGCTAGGAGCACGTTAAGCGTGTTGGCATGGAGCCTTAATGC
1 AAGAAATAAA-AGTGCTAGGAGCACGTTAAGCGTGTTGGCATGGAGCCTTAACAC
* * * *
26505539 AAGAAATAAAAGTGCTAGGGGCATGTTGAGCATGTTGGCA
1 AAGAAATAAAAGTGCTAGGAGCACGTTAAGCGTGTTGGCA
26505579 AGAAGTGAAG
Statistics
Matches: 119, Mismatches: 26, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
53 3 0.03
54 116 0.97
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.24
Consensus pattern (54 bp):
AAGAAATAAAAGTGCTAGGAGCACGTTAAGCGTGTTGGCATGGAGCCTTAACAC
Found at i:26510189 original size:85 final size:85
Alignment explanation
Indices: 26510042--26510294 Score: 461
Period size: 85 Copynumber: 3.0 Consensus size: 85
26510032 AGTATCGTAG
* *
26510042 TAGTTGAAAAGTTAGAAAATTTTAATATTTTTATACACAAACTATCATTGAATTCCACCTACCTA
1 TAGTTGAAAAATTAGAAAATTTTAATATTTTTATACACAAACTATCATTGAATTCCATCTACCTA
*
26510107 TCGAAATCTTATATTAATAA
66 TCGAAATCTTATTTTAATAA
26510127 TAGTTGAAAAATTAGAAAATTTTAATATTTTTATACACAAACTATCATTGAATTCCATCTACCTA
1 TAGTTGAAAAATTAGAAAATTTTAATATTTTTATACACAAACTATCATTGAATTCCATCTACCTA
*
26510192 TCGAAATCTTATTTTAATAG
66 TCGAAATCTTATTTTAATAA
*
26510212 TAGTTGAAAAATTAGAAAAATTTAATATTTTTATACACAAACTATCATTGAATTCCATCTACCTA
1 TAGTTGAAAAATTAGAAAATTTTAATATTTTTATACACAAACTATCATTGAATTCCATCTACCTA
26510277 TCGAAATCTTATTTTAAT
66 TCGAAATCTTATTTTAAT
26510295 GCTGTACCTC
Statistics
Matches: 163, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
85 163 1.00
ACGTcount: A:0.41, C:0.13, G:0.07, T:0.39
Consensus pattern (85 bp):
TAGTTGAAAAATTAGAAAATTTTAATATTTTTATACACAAACTATCATTGAATTCCATCTACCTA
TCGAAATCTTATTTTAATAA
Found at i:26519409 original size:13 final size:13
Alignment explanation
Indices: 26519393--26519431 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
26519383 TTAGTTTTTA
*
26519393 ATTTTTATATATT
1 ATTTTAATATATT
**
26519406 ATTTTAATATAAA
1 ATTTTAATATATT
26519419 ATTTTAATATATT
1 ATTTTAATATATT
26519432 TAAGTATTTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (13 bp):
ATTTTAATATATT
Found at i:26519447 original size:18 final size:20
Alignment explanation
Indices: 26519426--26519469 Score: 51
Period size: 19 Copynumber: 2.4 Consensus size: 20
26519416 AAAATTTTAA
26519426 TATATTTAAG-TATT-TTTT
1 TATATTTAAGTTATTATTTT
*
26519444 TATA-TAAAGTTATTATTTT
1 TATATTTAAGTTATTATTTT
26519463 TAT-TTTA
1 TATATTTA
26519470 TAAAAATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 5
0.75 0.07 0.18
Matches are distributed among these distances:
17 4 0.19
18 8 0.38
19 9 0.43
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.64
Consensus pattern (20 bp):
TATATTTAAGTTATTATTTT
Found at i:26519991 original size:19 final size:20
Alignment explanation
Indices: 26519967--26520007 Score: 57
Period size: 19 Copynumber: 2.1 Consensus size: 20
26519957 ATCTTGCCAA
**
26519967 AATTTTCATCAAATT-CTAG
1 AATTTTCAAAAAATTCCTAG
26519986 AATTTTCAAAAAATTCCTAG
1 AATTTTCAAAAAATTCCTAG
26520006 AA
1 AA
26520008 AAAAAAAGAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.44, C:0.15, G:0.05, T:0.37
Consensus pattern (20 bp):
AATTTTCAAAAAATTCCTAG
Found at i:26520582 original size:35 final size:33
Alignment explanation
Indices: 26520507--26520619 Score: 99
Period size: 32 Copynumber: 3.4 Consensus size: 33
26520497 AATAATAACA
*
26520507 ATAAAAGT-AAAATAAAGATAAAT-AAATTAAGT
1 ATAAAA-TAAAAATAAAGATAAATAAAATTAAAT
26520539 A-AAGAATAAAAATAAAGATAAATACAAAATTAAAT
1 ATAA-AATAAAAATAAAGATAAAT--AAAATTAAAT
* * * *
26520574 ATAAAATAAATATCAAGATAAAT-ATAGTAAAT
1 ATAAAATAAAAATAAAGATAAATAAAATTAAAT
*
26520606 AAAAAATATAAAAT
1 ATAAAATA-AAAAT
26520620 TAGACTTTTA
Statistics
Matches: 67, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
31 3 0.04
32 32 0.48
33 4 0.06
35 26 0.39
36 2 0.03
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.24
Consensus pattern (33 bp):
ATAAAATAAAAATAAAGATAAATAAAATTAAAT
Found at i:26520595 original size:23 final size:22
Alignment explanation
Indices: 26520543--26520608 Score: 69
Period size: 23 Copynumber: 2.8 Consensus size: 22
26520533 TTAAGTAAAG
*
26520543 AATAAAAATAAAGATAAATACAA
1 AATAAATATAAA-ATAAATACAA
26520566 AATTAAATATAAAATAAATATCAA
1 AA-TAAATATAAAATAAATA-CAA
*
26520590 GATAAATATAGTAAATAAA
1 AATAAATATA--AAATAAA
26520609 AAATATAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
23 17 0.46
24 13 0.35
25 7 0.19
ACGTcount: A:0.68, C:0.03, G:0.05, T:0.24
Consensus pattern (22 bp):
AATAAATATAAAATAAATACAA
Found at i:26520598 original size:12 final size:12
Alignment explanation
Indices: 26520543--26520598 Score: 55
Period size: 12 Copynumber: 4.8 Consensus size: 12
26520533 TTAAGTAAAG
*
26520543 AATAAAAAT-AA
1 AATAAATATCAA
26520554 AGATAAATA-CAA
1 A-ATAAATATCAA
26520566 AATTAAATAT-AA
1 AA-TAAATATCAA
26520578 AATAAATATCAA
1 AATAAATATCAA
*
26520590 GATAAATAT
1 AATAAATAT
26520599 AGTAAATAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
11 9 0.24
12 29 0.76
ACGTcount: A:0.68, C:0.04, G:0.04, T:0.25
Consensus pattern (12 bp):
AATAAATATCAA
Found at i:26520916 original size:33 final size:33
Alignment explanation
Indices: 26520856--26521052 Score: 130
Period size: 33 Copynumber: 6.0 Consensus size: 33
26520846 TTGAAACATG
* * *
26520856 ATGACTTGGAT-TTAGTTGTAGTTAGAAAATGAA
1 ATGACTTGG-TCTTAGCTGAAGTCAGAAAATGAA
*
26520889 ATGACTTGGTCTTAGCTGAAGTCAGAAAATAAA
1 ATGACTTGGTCTTAGCTGAAGTCAGAAAATGAA
* * * ** * *
26520922 ATGACTTGATCATAACCAAAGTCAAAAAATAAA
1 ATGACTTGGTCTTAGCTGAAGTCAGAAAATGAA
* * * * * **
26520955 ATAACTTTGTCTTAGTTGAAGTTAGGAAATGGT
1 ATGACTTGGTCTTAGCTGAAGTCAGAAAATGAA
* * ** *
26520988 ATAACTTGGACTTAGCCAAAGTCAGAAAATGAT
1 ATGACTTGGTCTTAGCTGAAGTCAGAAAATGAA
* * *
26521021 ATGGCTTGGTTTTAGCTTAAGTCA-AAAA-GAA
1 ATGACTTGGTCTTAGCTGAAGTCAGAAAATGAA
26521052 A
1 A
26521053 AAAGAAAAAA
Statistics
Matches: 124, Mismatches: 39, Indels: 4
0.74 0.23 0.02
Matches are distributed among these distances:
31 3 0.02
32 5 0.04
33 116 0.94
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.30
Consensus pattern (33 bp):
ATGACTTGGTCTTAGCTGAAGTCAGAAAATGAA
Found at i:26521360 original size:31 final size:30
Alignment explanation
Indices: 26521302--26521408 Score: 81
Period size: 31 Copynumber: 3.4 Consensus size: 30
26521292 TGTAAGTTAG
* * * *
26521302 AAAATTAAATGACTTAGATTGACTAGAGGTA
1 AAAAATAAATGAC-TAGACTAAATAGAGGTA
* *
26521333 AAAAATAAGTGACTGGGACTAAATAGA-GTCA
1 AAAAATAAATGACT-AGACTAAATAGAGGT-A
* * *
26521364 AGAAATTAAATGACCTAGACTGAATCGAGGTA
1 A-AAAATAAATGA-CTAGACTAAATAGAGGTA
26521396 AAAAATAAATGAC
1 AAAAATAAATGAC
26521409 ATGAACTGAA
Statistics
Matches: 59, Mismatches: 12, Indels: 11
0.72 0.15 0.13
Matches are distributed among these distances:
30 4 0.07
31 31 0.53
32 20 0.34
33 4 0.07
ACGTcount: A:0.49, C:0.09, G:0.20, T:0.22
Consensus pattern (30 bp):
AAAAATAAATGACTAGACTAAATAGAGGTA
Found at i:26521438 original size:33 final size:32
Alignment explanation
Indices: 26521366--26521517 Score: 123
Period size: 33 Copynumber: 4.8 Consensus size: 32
26521356 TAGAGTCAAG
* *
26521366 AAATTAAATGACCT-AGACTGAATCG-AGGTAA
1 AAATTAAATGACATGA-ACTGAATCGAAGTTAA
*
26521397 AAAATAAATGACATGAACTGAATCGTAAGTTAA
1 AAATTAAATGACATGAACTGAATCG-AAGTTAA
* * *
26521430 AAATTAAATGACTTGGACTGAATC-AAGATAA
1 AAATTAAATGACATGAACTGAATCGAAGTTAA
* * * * *
26521461 AAAATAAATGACCAAG-ACAGAACCGTAAGTCAA
1 AAATTAAATGA-CATGAACTGAATCG-AAGTTAA
* *
26521494 AAATTAAATGACCTGGACTGAATC
1 AAATTAAATGACATGAACTGAATC
26521518 AAGGTTGAAA
Statistics
Matches: 95, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
31 43 0.45
32 5 0.05
33 47 0.49
ACGTcount: A:0.49, C:0.13, G:0.16, T:0.22
Consensus pattern (32 bp):
AAATTAAATGACATGAACTGAATCGAAGTTAA
Found at i:26521440 original size:64 final size:65
Alignment explanation
Indices: 26521230--26521522 Score: 228
Period size: 64 Copynumber: 4.6 Consensus size: 65
26521220 ACTGAACCAC
* * * * *
26521230 AAGTTAGAAAATTAAATGACCT-GAATTGAACCGAGGTAGAAAATAAGTG--ATCGAGATTGAA-
1 AAGTTA-AAAATTAAATGACCTAG-ACTGAATCGAGGTAAAAAATAAATGACATCGA-ACTGAAT
26521291 CTGT
63 C-GT
* * * * * * * * *
26521295 AAGTTAGAAAATTAAATGACTTAGATTGACTAGAGGTAAAAAATAAGTGAC-TGGGACTAAATAG
1 AAGTTA-AAAATTAAATGACCTAGACTGAATCGAGGTAAAAAATAAATGACATCGAACTGAATCG
26521359 -
65 T
*
26521359 -AGTCAAGAAATTAAATGACCTAGACTGAATCGAGGTAAAAAATAAATGACAT-GAACTGAATCG
1 AAGTTAA-AAATTAAATGACCTAGACTGAATCGAGGTAAAAAATAAATGACATCGAACTGAATCG
26521422 T
65 T
* * * * * * *
26521423 AAGTTAAAAATTAAATGACTTGGACTGAATCAAGATAAAAAATAAATGAC--CAAGACAGAACCG
1 AAGTTAAAAATTAAATGACCTAGACTGAATCGAGGTAAAAAATAAATGACATCGA-ACTGAATCG
26521486 T
65 T
* * *
26521487 AAGTCAAAAATTAAATGACCTGGACTGAATCAAGGT
1 AAGTTAAAAATTAAATGACCTAGACTGAATCGAGGT
26521523 TGAAAATGAC
Statistics
Matches: 188, Mismatches: 30, Indels: 21
0.79 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 51 0.27
64 81 0.43
65 52 0.28
66 3 0.02
ACGTcount: A:0.47, C:0.11, G:0.20, T:0.23
Consensus pattern (65 bp):
AAGTTAAAAATTAAATGACCTAGACTGAATCGAGGTAAAAAATAAATGACATCGAACTGAATCGT
Found at i:26521529 original size:64 final size:64
Alignment explanation
Indices: 26521359--26521522 Score: 231
Period size: 64 Copynumber: 2.5 Consensus size: 64
26521349 GACTAAATAG
* * * * *
26521359 AGTCAAGAAATTAAATGACCTAGACTGAATCGAGGTAAAAAATAAATGACATGAACTGAATCGTA
1 AGTCAA-AAATTAAATGACCTGGACTGAATCAAGGTAAAAAATAAATGACAAGAACAGAACCGTA
* * *
26521424 AGTTAAAAATTAAATGACTTGGACTGAATCAAGATAAAAAATAAATGACCAAG-ACAGAACCGTA
1 AGTCAAAAATTAAATGACCTGGACTGAATCAAGGTAAAAAATAAATGA-CAAGAACAGAACCGTA
26521488 AGTCAAAAATTAAATGACCTGGACTGAATCAAGGT
1 AGTCAAAAATTAAATGACCTGGACTGAATCAAGGT
26521523 TGAAAATGAC
Statistics
Matches: 87, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
64 79 0.91
65 8 0.09
ACGTcount: A:0.48, C:0.13, G:0.18, T:0.21
Consensus pattern (64 bp):
AGTCAAAAATTAAATGACCTGGACTGAATCAAGGTAAAAAATAAATGACAAGAACAGAACCGTA
Found at i:26522628 original size:28 final size:29
Alignment explanation
Indices: 26522579--26522635 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 29
26522569 TTTCGACTTT
26522579 ATTCTTTCTTTTCCTTTCTTTTCATTTTTC
1 ATTCTTTCTTTT-CTTTCTTTTCATTTTTC
26522609 ATTCTCTTCTTTT-TTT-TTTTCATTTTT
1 ATTCT-TTCTTTTCTTTCTTTTCATTTTT
26522636 TCTATTTTTT
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
28 11 0.42
29 3 0.12
30 5 0.19
31 7 0.27
ACGTcount: A:0.07, C:0.19, G:0.00, T:0.74
Consensus pattern (29 bp):
ATTCTTTCTTTTCTTTCTTTTCATTTTTC
Found at i:26522643 original size:21 final size:20
Alignment explanation
Indices: 26522593--26522656 Score: 67
Period size: 21 Copynumber: 3.1 Consensus size: 20
26522583 TTTCTTTTCC
**
26522593 TTTCTTTTCATTTTTCATTCT
1 TTTCTTTTTTTTTTTCATT-T
*
26522614 CTTCTTTTTTTTTTTCATTT
1 TTTCTTTTTTTTTTTCATTT
*
26522634 TTTC-TATTTTTTTTCTATTT
1 TTTCTTTTTTTTTTTC-ATTT
26522654 TTT
1 TTT
26522657 GGCTTTATTC
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
19 10 0.27
20 11 0.30
21 16 0.43
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTCTTTTTTTTTTTCATTT
Found at i:26524347 original size:20 final size:20
Alignment explanation
Indices: 26524318--26524447 Score: 81
Period size: 16 Copynumber: 7.0 Consensus size: 20
26524308 TTCGTGCTAG
26524318 AATT-TCATGCAAATATATT
1 AATTATCATGCAAATATATT
26524337 AATTATCATGC-AATA-A-T
1 AATTATCATGCAAATATATT
*
26524354 AATAAT-AT--AAATATA-T
1 AATTATCATGCAAATATATT
26524370 AA-TATCATGC-AA-ATA-T
1 AATTATCATGCAAATATATT
* *
26524386 -ATTATCATTC-AATAATATA
1 AATTATCATGCAAAT-ATATT
*
26524405 AAATATCATGCAAATATATT
1 AATTATCATGCAAATATATT
26524425 AATAATCATTCATGCAAATATAT
1 AAT--T-A-TCATGCAAATATAT
26524448 AATCATGAAA
Statistics
Matches: 87, Mismatches: 8, Indels: 27
0.71 0.07 0.22
Matches are distributed among these distances:
15 7 0.08
16 21 0.24
17 8 0.09
18 4 0.05
19 8 0.09
20 20 0.23
21 3 0.03
22 1 0.01
23 1 0.01
24 14 0.16
ACGTcount: A:0.49, C:0.10, G:0.04, T:0.37
Consensus pattern (20 bp):
AATTATCATGCAAATATATT
Done.