Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 160 of 195
Found at i:26661790 original size:44 final size:44
Alignment explanation
Indices: 26661700--26661982 Score: 291
Period size: 44 Copynumber: 6.4 Consensus size: 44
26661690 AGAGGCTCAT
** * * * *
26661700 AACTTTTGAAAAATAAATAGGGTTTTCCTTTAAACAAAGGTTCAAT
1 AACTTTTGAAAAATAAATAAAG-CTT-CTCTAAACAGAGGTTCAAC
* * * * *
26661746 GACTTTTGAAAAATAAATAAAGCTTCTTTAAACAGCGGCTCAAT
1 AACTTTTGAAAAATAAATAAAGCTTCTCTAAACAGAGGTTCAAC
* * * *
26661790 GACTTTAGAAAAATAAATAAAGCTT-TCCTAAAAAGAGGCTCAAC
1 AACTTTTGAAAAATAAATAAAGCTTCT-CTAAACAGAGGTTCAAC
* * *
26661834 AAC-TTTGAAAAATAAATGAAGCTTCTCTAAATAGAAGTTCAAC
1 AACTTTTGAAAAATAAATAAAGCTTCTCTAAACAGAGGTTCAAC
* * * *
26661877 AACTTTTGAAAAGTAAATAAGGCTTCTCTAAACAAAGGTTTAAC
1 AACTTTTGAAAAATAAATAAAGCTTCTCTAAACAGAGGTTCAAC
* * * *
26661921 GACTTTTGAAAAGTAAATAAGGCTTCTCTAAACAGAGGTTTAAC
1 AACTTTTGAAAAATAAATAAAGCTTCTCTAAACAGAGGTTCAAC
26661965 AACTTTTGAAAAATAAAT
1 AACTTTTGAAAAATAAAT
26661983 GAATCTTTCT
Statistics
Matches: 205, Mismatches: 29, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
43 37 0.18
44 147 0.72
45 2 0.01
46 19 0.09
ACGTcount: A:0.44, C:0.13, G:0.13, T:0.29
Consensus pattern (44 bp):
AACTTTTGAAAAATAAATAAAGCTTCTCTAAACAGAGGTTCAAC
Found at i:26661882 original size:87 final size:88
Alignment explanation
Indices: 26661700--26661994 Score: 301
Period size: 87 Copynumber: 3.3 Consensus size: 88
26661690 AGAGGCTCAT
** * * * **
26661700 AACTTTTGAAAAATAAATAGGGTTTTCCTTTAAACAAAGGTTCAATGACTTTTGAAAAATAAATA
1 AACTTTTGAAAAATAAATAAAGCTTT-CTCTAAACAAAGGCTCAACAACTTTTGAAAAATAAAT-
* * * *
26661765 AAGCTTCTTTAAACAGCGGCTCAAT
64 AAGCTTCTCTAAACAGAGGTTCAAC
* *
26661790 GACTTTAGAAAAATAAATAAAGCTTTC-CTAAA-AAGAGGCTCAACAAC-TTTGAAAAATAAATG
1 AACTTTTGAAAAATAAATAAAGCTTTCTCTAAACAA-AGGCTCAACAACTTTTGAAAAATAAAT-
* *
26661852 AAGCTTCTCTAAATAGAAGTTCAAC
64 AAGCTTCTCTAAACAGAGGTTCAAC
* * * * * *
26661877 AACTTTTGAAAAGTAAATAAGGC-TTCTCTAAACAAAGGTTTAACGACTTTTGAAAAGTAAATAA
1 AACTTTTGAAAAATAAATAAAGCTTTCTCTAAACAAAGGCTCAACAACTTTTGAAAAATAAATAA
*
26661941 GGCTTCTCTAAACAGAGGTTTAAC
66 -GCTTCTCTAAACAGAGGTTCAAC
* *
26661965 AACTTTTGAAAAATAAATGAATCTTTCTCT
1 AACTTTTGAAAAATAAATAAAGCTTTCTCT
26661995 TCCATGACTA
Statistics
Matches: 168, Mismatches: 31, Indels: 13
0.79 0.15 0.06
Matches are distributed among these distances:
86 3 0.02
87 70 0.42
88 67 0.40
89 7 0.04
90 21 0.12
ACGTcount: A:0.43, C:0.14, G:0.13, T:0.30
Consensus pattern (88 bp):
AACTTTTGAAAAATAAATAAAGCTTTCTCTAAACAAAGGCTCAACAACTTTTGAAAAATAAATAA
GCTTCTCTAAACAGAGGTTCAAC
Found at i:26661926 original size:131 final size:133
Alignment explanation
Indices: 26661690--26661994 Score: 334
Period size: 131 Copynumber: 2.3 Consensus size: 133
26661680 TCCTCTAAGT
* * * * * **
26661690 AGAGGCTC-ATAACTTTTGAAAAATAAAT-AGGGTTTTCCTTTAAACA-AAGGTTCAATGACTTT
1 AGAGGCTCAACAACTTTTGAAAAATAAATGA-AGCTTT-CTCTAAATAGAA-GTTCAACAACTTT
* ** *
26661752 TGAAAAATAAATAAAGCTTCTTTAAACAGCGGCTCAATGACTTTAGAAAAATAAATAAAGCTT-T
63 TGAAAAATAAATAAAGCTTCTCTAAACAAAGGCTCAACGACTTTAGAAAAATAAATAAAGCTTCT
26661816 CCTAAAA
128 -CTAAAA
26661823 AGAGGCTCAACAAC-TTTGAAAAATAAATGAAGC-TTCTCTAAATAGAAGTTCAACAACTTTTGA
1 AGAGGCTCAACAACTTTTGAAAAATAAATGAAGCTTTCTCTAAATAGAAGTTCAACAACTTTTGA
* * * * * * *
26661886 AAAGTAAATAAGGCTTCTCTAAACAAAGGTTTAACGACTTTTGAAAAGTAAATAAGGCTTCTCTA
66 AAAATAAATAAAGCTTCTCTAAACAAAGGCTCAACGACTTTAGAAAAATAAATAAAGCTTCTCTA
*
26661951 AAC
131 AAA
* * *
26661954 AGAGGTTTAACAACTTTTGAAAAATAAATGAATCTTTCTCT
1 AGAGGCTCAACAACTTTTGAAAAATAAATGAAGCTTTCTCT
26661995 TCCATGACTA
Statistics
Matches: 144, Mismatches: 22, Indels: 12
0.81 0.12 0.07
Matches are distributed among these distances:
131 87 0.60
132 23 0.16
133 29 0.20
134 5 0.03
ACGTcount: A:0.42, C:0.14, G:0.14, T:0.30
Consensus pattern (133 bp):
AGAGGCTCAACAACTTTTGAAAAATAAATGAAGCTTTCTCTAAATAGAAGTTCAACAACTTTTGA
AAAATAAATAAAGCTTCTCTAAACAAAGGCTCAACGACTTTAGAAAAATAAATAAAGCTTCTCTA
AAA
Found at i:26662417 original size:44 final size:44
Alignment explanation
Indices: 26662330--26662438 Score: 105
Period size: 44 Copynumber: 2.5 Consensus size: 44
26662320 CAATCAAGTC
* * *
26662330 CAAATATTCA-CATTCAATAAATTTTAGAGTTTAACATCTAAA-TT
1 CAAATATT-ATCATTCAA-AAAATTTAGAGGTTAACATCAAAATTT
* *
26662374 CAAATATTATCATTCAAAAAATTTAGGGGTTCACATCCAAAATTT
1 CAAATATTATCATTCAAAAAATTTAGAGGTTAACAT-CAAAATTT
** *
26662419 CAAAGCTTCTCATTCAAAAA
1 CAAATATTATCATTCAAAAA
26662439 TTTTTGGTGA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
43 16 0.30
44 19 0.35
45 19 0.35
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.34
Consensus pattern (44 bp):
CAAATATTATCATTCAAAAAATTTAGAGGTTAACATCAAAATTT
Found at i:26662546 original size:14 final size:14
Alignment explanation
Indices: 26662527--26662568 Score: 75
Period size: 14 Copynumber: 3.0 Consensus size: 14
26662517 AACTCAAAGA
26662527 CAAAGATTCTTATT
1 CAAAGATTCTTATT
*
26662541 CAAAGATTCTCATT
1 CAAAGATTCTTATT
26662555 CAAAGATTCTTATT
1 CAAAGATTCTTATT
26662569 TAAAACTTCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.36, C:0.17, G:0.07, T:0.40
Consensus pattern (14 bp):
CAAAGATTCTTATT
Found at i:26669941 original size:36 final size:36
Alignment explanation
Indices: 26669901--26669969 Score: 95
Period size: 36 Copynumber: 1.9 Consensus size: 36
26669891 AATAAGCAAG
*
26669901 TTTGAATAGAAAAACATGACTGTCTG-AATAAGTATA
1 TTTGAACAGAAAAACATGACTGTC-GAAATAAGTATA
* *
26669937 TTTGAACATAAAAACATGATTGTCGAAATAAGT
1 TTTGAACAGAAAAACATGACTGTCGAAATAAGT
26669970 TTTTTTGTGA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 1 0.03
36 28 0.97
ACGTcount: A:0.45, C:0.09, G:0.16, T:0.30
Consensus pattern (36 bp):
TTTGAACAGAAAAACATGACTGTCGAAATAAGTATA
Found at i:26682378 original size:73 final size:72
Alignment explanation
Indices: 26682290--26682468 Score: 207
Period size: 73 Copynumber: 2.5 Consensus size: 72
26682280 AAACATAGGT
*
26682290 AACCGATCGAT-CCCCTTTAGACAGGATCGATCAAGTGTAAAGGCAGTAGCCAATTTCGTTGAAC
1 AACCGATCGATCCCCCTTT-GACAGGATCGATCAAGTGTAAAGGCAGTAGCCAATTTCGTTAAAC
26682354 CCAAAAAG
65 CCAAAAAG
* * * * * * *
26682362 AACCGATCGATCCCCCTTGGGATAAGATCGATTAGGTGTGAAGGTAGTAGCCAATTTCGTTAAAC
1 AACCGATCGATCCCCCTT-TGACAGGATCGATCAAGTGTAAAGGCAGTAGCCAATTTCGTTAAAC
* **
26682427 TCAGGAAG
65 CCAAAAAG
* *
26682435 AACCGATCAATCCCCTCTTTGACAGGATCAATCA
1 AACCGATCGATCCCC-CTTTGACAGGATCGATCA
26682469 GGTATTCAAC
Statistics
Matches: 87, Mismatches: 17, Indels: 5
0.80 0.16 0.05
Matches are distributed among these distances:
72 11 0.13
73 73 0.84
74 3 0.03
ACGTcount: A:0.32, C:0.23, G:0.21, T:0.23
Consensus pattern (72 bp):
AACCGATCGATCCCCCTTTGACAGGATCGATCAAGTGTAAAGGCAGTAGCCAATTTCGTTAAACC
CAAAAAG
Found at i:26685159 original size:21 final size:21
Alignment explanation
Indices: 26685128--26685185 Score: 80
Period size: 21 Copynumber: 2.7 Consensus size: 21
26685118 ACATGAACCA
* *
26685128 ATCGATTCCCTTAGGAAGGGG
1 ATCGATCCCCTAAGGAAGGGG
*
26685149 ATTGATCCCCTAAGGAAGGGG
1 ATCGATCCCCTAAGGAAGGGG
26685170 ATCGATCCCCTGAAGG
1 ATCGATCCCCT-AAGG
26685186 CCTGAAACTC
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 28 0.88
22 4 0.12
ACGTcount: A:0.26, C:0.22, G:0.31, T:0.21
Consensus pattern (21 bp):
ATCGATCCCCTAAGGAAGGGG
Found at i:26686420 original size:9 final size:9
Alignment explanation
Indices: 26686406--26686431 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26686396 TCACCTATAT
26686406 TATTTTAAA
1 TATTTTAAA
26686415 TATTTTAAA
1 TATTTTAAA
26686424 TATTTTAA
1 TATTTTAA
26686432 TTAATTAGTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (9 bp):
TATTTTAAA
Found at i:26686965 original size:151 final size:153
Alignment explanation
Indices: 26686722--26687027 Score: 438
Period size: 151 Copynumber: 2.0 Consensus size: 153
26686712 AAGTGTGAAC
* * * * * *
26686722 TCTAAAAGTATTAATAGTGAACGACATAAATACCCTTATCAATTTTAAGAAATAACAAATTTACT
1 TCTAAAAGTATTAAAAATGAACAACATAAATACCCTTATAAAATTTAAAAAATAACAAATTTACT
* *
26686787 TTTAAATTTCTAGCATTTTTTAATTATTTAATAATGATTATTTGTCATTAAATATATAGCTTTTA
66 TTTAAATTTCTAGCATTTTTTAATTATTTAATAAAGATTATTTGTCATTAAAAATATAGCTTTTA
26686852 TTAGCTAG-T-TTTAAATTTAAA
131 TTAGCTAGTTATTTAAATTTAAA
* * * *
26686873 TCTAAAAGTGTTAAAAATGAATAACATAAATATCTTTATAAAATTTAAAAAATAACAAATTTA-T
1 TCTAAAAGTATTAAAAATGAACAACATAAATACCCTTATAAAATTTAAAAAATAACAAATTTACT
* *
26686937 ATTTCAATTTCTAGCATTTTTTATTTATTTAATAAAGATTATTTGTCATTAAAAATATAGCTTTT
66 -TTTAAATTTCTAGCATTTTTTAATTATTTAATAAAGATTATTTGTCATTAAAAATATAGCTTTT
* *
26687002 ATTTGTTAGTTATTTAAATTTAAA
130 ATTAGCTAGTTATTTAAATTTAAA
26687026 TC
1 TC
26687028 AATTAAAAAT
Statistics
Matches: 136, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
150 1 0.01
151 120 0.88
152 1 0.01
153 14 0.10
ACGTcount: A:0.41, C:0.08, G:0.07, T:0.44
Consensus pattern (153 bp):
TCTAAAAGTATTAAAAATGAACAACATAAATACCCTTATAAAATTTAAAAAATAACAAATTTACT
TTTAAATTTCTAGCATTTTTTAATTATTTAATAAAGATTATTTGTCATTAAAAATATAGCTTTTA
TTAGCTAGTTATTTAAATTTAAA
Found at i:26689462 original size:18 final size:21
Alignment explanation
Indices: 26689441--26689483 Score: 65
Period size: 18 Copynumber: 2.2 Consensus size: 21
26689431 TCATAAAACT
26689441 TTAATTTT-ATA-AAAA-AAA
1 TTAATTTTAATATAAAATAAA
26689459 TTAATTTTAATATAAAATAAA
1 TTAATTTTAATATAAAATAAA
26689480 TTAA
1 TTAA
26689484 AGTGAAAACT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 8 0.36
19 3 0.14
20 4 0.18
21 7 0.32
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (21 bp):
TTAATTTTAATATAAAATAAA
Found at i:26690099 original size:22 final size:22
Alignment explanation
Indices: 26690083--26690342 Score: 98
Period size: 22 Copynumber: 11.9 Consensus size: 22
26690073 TTAAATTATG
26690083 AATAACTTAATAATAAATAAAT
1 AATAACTTAATAATAAATAAAT
* * *
26690105 AATAATTTAGTAATAAATAATT
1 AATAACTTAATAATAAATAAAT
* ** ** ****
26690127 GATAAGATAATTGTATGCCAAT
1 AATAACTTAATAATAAATAAAT
* * *
26690149 GATAACATAATAATAAATACAT
1 AATAACTTAATAATAAATAAAT
* *
26690171 AAT-ACTATAGTAGTAAATAACA-
1 AATAACT-TAATAATAAATAA-AT
** * *
26690193 AATAACTTAATGGTAAATTATT
1 AATAACTTAATAATAAATAAAT
* * ** *
26690215 TAT-ACATAATTGTAAATATAT
1 AATAACTTAATAATAAATAAAT
** * * *
26690236 AATAAAATAGTAATAAATTAAG
1 AATAACTTAATAATAAATAAAT
* * *
26690258 GATAATTTAATAA-AAATAAGT
1 AATAACTTAATAATAAATAAAT
* *
26690279 GATAACTTAATAGTAAAGT-AAT
1 AATAACTTAATAATAAA-TAAAT
* *
26690301 AATAACTTAATAGTAAATTAAT
1 AATAACTTAATAATAAATAAAT
* *
26690323 AATAATTTAATAGTAAATAA
1 AATAACTTAATAATAAATAA
26690343 GATTCAGTTT
Statistics
Matches: 172, Mismatches: 58, Indels: 16
0.70 0.24 0.07
Matches are distributed among these distances:
21 34 0.20
22 133 0.77
23 5 0.03
ACGTcount: A:0.54, C:0.04, G:0.08, T:0.34
Consensus pattern (22 bp):
AATAACTTAATAATAAATAAAT
Found at i:26690295 original size:65 final size:66
Alignment explanation
Indices: 26690221--26690343 Score: 151
Period size: 65 Copynumber: 1.9 Consensus size: 66
26690211 TATTTATACA
* * *
26690221 TAATTGTAAA-TATATAATAAAATAGTAATAAATTAAGGATAATTTAATA-AAAATAAGTGATAA
1 TAATAGTAAAGTA-ATAATAAAATAATAATAAATTAAGAATAATTTAATAGAAAATAAGTGATAA
26690284 CT
65 CT
** * * *
26690286 TAATAGTAAAGTAATAATAACTTAATAGTAAATTAATAATAATTTAATAGTAAATAAG
1 TAATAGTAAAGTAATAATAAAATAATAATAAATTAAGAATAATTTAATAGAAAATAAG
26690344 ATTCAGTTTA
Statistics
Matches: 48, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
65 39 0.81
66 9 0.19
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (66 bp):
TAATAGTAAAGTAATAATAAAATAATAATAAATTAAGAATAATTTAATAGAAAATAAGTGATAAC
T
Found at i:26690311 original size:11 final size:11
Alignment explanation
Indices: 26690234--26690340 Score: 74
Period size: 11 Copynumber: 9.8 Consensus size: 11
26690224 TTGTAAATAT
*
26690234 ATAATAAAATA
1 ATAATAAATTA
*
26690245 GTAATAAATTA
1 ATAATAAATTA
** *
26690256 AGGATAATTTA
1 ATAATAAATTA
26690267 ATAA-AAA-TA
1 ATAATAAATTA
* *
26690276 AGTGATAACTTA
1 A-TAATAAATTA
* *
26690288 ATAGTAAAGTA
1 ATAATAAATTA
*
26690299 ATAATAACTTA
1 ATAATAAATTA
*
26690310 ATAGTAAATTA
1 ATAATAAATTA
*
26690321 ATAATAATTTA
1 ATAATAAATTA
*
26690332 ATAGTAAAT
1 ATAATAAAT
26690341 AAGATTCAGT
Statistics
Matches: 69, Mismatches: 24, Indels: 6
0.70 0.24 0.06
Matches are distributed among these distances:
9 3 0.04
10 4 0.06
11 59 0.86
12 3 0.04
ACGTcount: A:0.56, C:0.02, G:0.08, T:0.34
Consensus pattern (11 bp):
ATAATAAATTA
Found at i:26690729 original size:25 final size:22
Alignment explanation
Indices: 26690676--26690729 Score: 54
Period size: 22 Copynumber: 2.3 Consensus size: 22
26690666 AATTAATGAT
* *
26690676 AATTTAGTAGTAAAAAATTTAG
1 AATTTAGTAGTAAAAAATTGAA
*
26690698 AACTTAGTAGTAATTAATAATTGAA
1 AATTTAGTAGTAA--AA-AATTGAA
26690723 AATTTAG
1 AATTTAG
26690730 AACTTAGTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 3
0.78 0.12 0.09
Matches are distributed among these distances:
22 12 0.48
24 2 0.08
25 11 0.44
ACGTcount: A:0.48, C:0.02, G:0.13, T:0.37
Consensus pattern (22 bp):
AATTTAGTAGTAAAAAATTGAA
Found at i:26690841 original size:22 final size:22
Alignment explanation
Indices: 26690797--26691189 Score: 237
Period size: 22 Copynumber: 17.9 Consensus size: 22
26690787 ATAATTCTGT
* *
26690797 ATAGTAAATTAATGATAACTTA
1 ATAGTAAATCAATAATAACTTA
* * *
26690819 ATAATATATCAATAATAATTTA
1 ATAGTAAATCAATAATAACTTA
*
26690841 ATAGTAAAT-AATTGATAACTTA
1 ATAGTAAATCAA-TAATAACTTA
26690863 ATAGTAAATCAATAATAA-TATA
1 ATAGTAAATCAATAATAACT-TA
26690885 ATAGTAAATGCAA-AATAACTTA
1 ATAGTAAAT-CAATAATAACTTA
* *
26690907 ATAGTAAATCAATTATAACATA
1 ATAGTAAATCAATAATAACTTA
* * *
26690929 ATTGTAAATGC-ATAATAGCATA
1 ATAGTAAAT-CAATAATAACTTA
* * *
26690951 GTAGTAAATCAATCATAATTTA
1 ATAGTAAATCAATAATAACTTA
** * *
26690973 ATAAAAAATAAATGATAACTTA
1 ATAGTAAATCAATAATAACTTA
* * * *
26690995 ATAGTTAATCATTGATAATTTA
1 ATAGTAAATCAATAATAACTTA
*
26691017 ATAGTAAATCAATGAA-AATTTA
1 ATAGTAAATCAAT-AATAACTTA
* *
26691039 GA-AATAAAT-TATAGATAACTTA
1 -ATAGTAAATCAATA-ATAACTTA
** ** *
26691061 ATAGTAAATCTGTTTTAATTTA
1 ATAGTAAATCAATAATAACTTA
* * *
26691083 ATAGTAATTAAATTATAAACTTA
1 ATAGTAAATCAATAAT-AACTTA
**
26691106 GCAGTAAATC-ATAAATAACTTA
1 ATAGTAAATCAAT-AATAACTTA
* * * * *
26691128 AAAATAAATAAATGATAATTTA
1 ATAGTAAATCAATAATAACTTA
* * * *
26691150 GTAGTTAATCACTAA-AACTCA
1 ATAGTAAATCAATAATAACTTA
*
26691171 ATAGTAAATCAATGATAAC
1 ATAGTAAATCAATAATAAC
26691190 ATGGTAGCAA
Statistics
Matches: 279, Mismatches: 74, Indels: 36
0.72 0.19 0.09
Matches are distributed among these distances:
20 1 0.00
21 26 0.09
22 226 0.81
23 26 0.09
ACGTcount: A:0.51, C:0.07, G:0.08, T:0.34
Consensus pattern (22 bp):
ATAGTAAATCAATAATAACTTA
Found at i:26690860 original size:44 final size:43
Alignment explanation
Indices: 26690797--26691301 Score: 234
Period size: 44 Copynumber: 11.5 Consensus size: 43
26690787 ATAATTCTGT
* *
26690797 ATAGTAAATTAATGATAACTTAATAATATATCAATAATAATTTA
1 ATAGTAAA-TAATGATAACTTAATAGTAAATCAATAATAATTTA
*
26690841 ATAGTAAATAATTGATAACTTAATAGTAAATCAATAATAATATA
1 ATAGTAAATAA-TGATAACTTAATAGTAAATCAATAATAATTTA
* * **
26690885 ATAGTAAATGCAA-AATAACTTAATAGTAAATCAATTATAACATA
1 ATAGTAAAT--AATGATAACTTAATAGTAAATCAATAATAATTTA
* * * * * * *
26690929 ATTGTAAATGCATAATAGCATAGTAGTAAATCAATCATAATTTA
1 ATAGTAAAT-AATGATAACTTAATAGTAAATCAATAATAATTTA
** * * *
26690973 ATAAAAAATAAATGATAACTTAATAGTTAATCATTGATAATTTA
1 ATAGTAAAT-AATGATAACTTAATAGTAAATCAATAATAATTTA
* * * * *
26691017 ATAGTAAATCAATGAAAATTTAGA-AATAAAT-TATAGATAACTTA
1 ATAGTAAAT-AATGATAACTTA-ATAGTAAATCAATA-ATAATTTA
* * * * * * *
26691061 ATAGTAAAT-CTGTTTTAATTTAATAGTAATTAAATTATAAACTTA
1 ATAGTAAATAATG--ATAACTTAATAGTAAATCAATAAT-AATTTA
** * * * * * *
26691106 GCAGTAAATCATAAATAACTTAAAAATAAATAAATGATAATTTA
1 ATAGTAAATAAT-GATAACTTAATAGTAAATCAATAATAATTTA
* * * * * * ** *
26691150 GTAGTTAATCACT-AAAACTCAATAGTAAATCAATGATAACATG
1 ATAGTAAAT-AATGATAACTTAATAGTAAATCAATAATAATTTA
* * * * * * * *
26691193 GTAGCAAATGCATAAT-A-GTATATAGTAAATCATTGATAATTTT
1 ATAGTAAAT-AATGATAACTTA-ATAGTAAATCAATAATAATTTA
* * * *
26691236 ATAGTAAATTATTGATAATTTAGTAGTAAATCACTAATAATGTT-
1 ATAGTAAA-TAATGATAACTTAATAGTAAATCAATAATAAT-TTA
*
26691280 ATAGTAAATTATTGATAACTTA
1 ATAGTAAA-TAATGATAACTTA
26691302 GCTATAAATT
Statistics
Matches: 351, Mismatches: 90, Indels: 40
0.73 0.19 0.08
Matches are distributed among these distances:
42 3 0.01
43 64 0.18
44 242 0.69
45 39 0.11
46 3 0.01
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.35
Consensus pattern (43 bp):
ATAGTAAATAATGATAACTTAATAGTAAATCAATAATAATTTA
Found at i:26690902 original size:66 final size:66
Alignment explanation
Indices: 26690797--26691288 Score: 275
Period size: 66 Copynumber: 7.5 Consensus size: 66
26690787 ATAATTCTGT
* * * * *
26690797 ATAGTAAATTAATGATAACT-TAATAATATATCAATAATAATTTAATAGTAAATAATTGATAACT
1 ATAGTAAATCAATAATAA-TATAATAGTAAATCAATAATAATTTAATAATAAATAATTGATAACT
26690861 TA
65 TA
* *
26690863 ATAGTAAATCAATAATAATATAATAGTAAATGCAA-AATAACTTAATAGTAAATCAATT-ATAAC
1 ATAGTAAATCAATAATAATATAATAGTAAAT-CAATAATAATTTAATAATAAAT-AATTGATAAC
*
26690926 ATA
64 TTA
* ** * * * *
26690929 ATTGTAAATGC-ATAATAGCATAGTAGTAAATCAATCATAATTTAATAAAAAATAAATGATAACT
1 ATAGTAAAT-CAATAATAATATAATAGTAAATCAATAATAATTTAATAATAAATAATTGATAACT
26690993 TA
65 TA
* * * * * *
26690995 ATAGTTAATCATTGATAATTTAATAGTAAATCAATGAA-AATTTAGA-AATAAATTATAGATAAC
1 ATAGTAAATCAATAATAATATAATAGTAAATCAAT-AATAATTTA-ATAATAAATAATTGATAAC
26691058 TTA
64 TTA
** ** * * * * * ** * * **
26691061 ATAGTAAATCTGTTTTAATTTAATAGTAATTAAATTATAAACTTAGCAGTAAATCATAAATAACT
1 ATAGTAAATCAATAATAATATAATAGTAAATCAATAAT-AATTTAATAATAAATAATTGATAACT
26691126 TA
65 TA
* * * * * * * * * * * *
26691128 AAAATAAATAAATGATAATTTAGTAGTTAATCACTAA-AACTCAATAGTAAATCAA-TGATAACA
1 ATAGTAAATCAATAATAATATAATAGTAAATCAATAATAATTTAATAATAAAT-AATTGATAACT
*
26691191 TG
65 TA
* * * * * * * * *
26691193 GTAGCAAATGC-ATAATAGTAT-ATAGTAAATCATTGATAATTTTATAGTAAATTATTGATAATT
1 ATAGTAAAT-CAATAATAATATAATAGTAAATCAATAATAATTTAATAATAAATAATTGATAACT
26691256 TA
65 TA
* * * *
26691258 GTAGTAAATCACTAATAATGTTATAGTAAAT
1 ATAGTAAATCAATAATAATATAATAGTAAAT
26691289 TATTGATAAC
Statistics
Matches: 322, Mismatches: 86, Indels: 36
0.73 0.19 0.08
Matches are distributed among these distances:
64 13 0.04
65 73 0.23
66 180 0.56
67 56 0.17
ACGTcount: A:0.50, C:0.07, G:0.09, T:0.35
Consensus pattern (66 bp):
ATAGTAAATCAATAATAATATAATAGTAAATCAATAATAATTTAATAATAAATAATTGATAACTT
A
Found at i:26691240 original size:65 final size:66
Alignment explanation
Indices: 26691171--26691297 Score: 152
Period size: 65 Copynumber: 1.9 Consensus size: 66
26691161 CTAAAACTCA
*
26691171 ATAGTAAATCAATGATAACATGGTAGCAAATGCA-TAAT-A-GTATATAGTAAATCATTGATAAT
1 ATAGTAAATCAATGATAACATAGTAGCAAAT-CACTAATAATGT-TATAGTAAATCATTGATAAT
26691233 TTT
64 TTT
* * ** * *
26691236 ATAGTAAATTATTGATAATTTAGTAGTAAATCACTAATAATGTTATAGTAAATTATTGATAA
1 ATAGTAAATCAATGATAACATAGTAGCAAATCACTAATAATGTTATAGTAAATCATTGATAA
26691298 CTTAGCTATA
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
64 2 0.04
65 29 0.56
66 19 0.37
67 2 0.04
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.37
Consensus pattern (66 bp):
ATAGTAAATCAATGATAACATAGTAGCAAATCACTAATAATGTTATAGTAAATCATTGATAATTT
T
Found at i:26691241 original size:22 final size:22
Alignment explanation
Indices: 26691213--26691297 Score: 109
Period size: 22 Copynumber: 3.9 Consensus size: 22
26691203 CATAATAGTA
26691213 TATAGTAAATCATTGATAATTT
1 TATAGTAAATCATTGATAATTT
*
26691235 TATAGTAAATTATTGATAA-TT
1 TATAGTAAATCATTGATAATTT
* * *
26691256 TAGTAGTAAATCACTAATAATGT
1 TA-TAGTAAATCATTGATAATTT
*
26691279 TATAGTAAATTATTGATAA
1 TATAGTAAATCATTGATAA
26691298 CTTAGCTATA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
21 4 0.08
22 46 0.87
23 3 0.06
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.42
Consensus pattern (22 bp):
TATAGTAAATCATTGATAATTT
Found at i:26691309 original size:22 final size:21
Alignment explanation
Indices: 26691240--26691333 Score: 73
Period size: 22 Copynumber: 4.3 Consensus size: 21
26691230 AATTTTATAG
* *
26691240 TAAATTATTGATAATTTAGTA
1 TAAATTAGTGATAACTTAGTA
* * * *
26691261 GTAAATCACTAATAATGTTA-TA
1 -TAAATTAGTGATAA-CTTAGTA
*
26691283 GTAAATTATTGATAACTTAGCTA
1 -TAAATTAGTGATAACTTAG-TA
*
26691306 TAAATTAGTGATAATTTAGTA
1 TAAATTAGTGATAACTTAGTA
26691327 TAAATTA
1 TAAATTA
26691334 ATAATGATTT
Statistics
Matches: 59, Mismatches: 10, Indels: 7
0.78 0.13 0.09
Matches are distributed among these distances:
21 12 0.20
22 42 0.71
23 5 0.08
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.41
Consensus pattern (21 bp):
TAAATTAGTGATAACTTAGTA
Found at i:26691310 original size:66 final size:67
Alignment explanation
Indices: 26691204--26691331 Score: 174
Period size: 66 Copynumber: 1.9 Consensus size: 67
26691194 TAGCAAATGC
* *
26691204 ATAATAGTATATAGTAAATCATTGATAATTTTATAGTAAATTATTGATAATTTAGTAGTAAATCA
1 ATAATAGTATATAGTAAATCATTGATAATCTTATAGTAAATTAGTGATAATTTAGTA-TAAATCA
26691269 CTA
65 CTA
*
26691272 ATAAT-GT-TATAGTAAATTATTGATAA-CTTAGCTA-TAAATTAGTGATAATTTAGTATAAAT
1 ATAATAGTATATAGTAAATCATTGATAATCTTA--TAGTAAATTAGTGATAATTTAGTATAAAT
26691332 TAATAATGAT
Statistics
Matches: 55, Mismatches: 3, Indels: 7
0.85 0.05 0.11
Matches are distributed among these distances:
65 8 0.15
66 38 0.69
67 4 0.07
68 5 0.09
ACGTcount: A:0.44, C:0.04, G:0.11, T:0.41
Consensus pattern (67 bp):
ATAATAGTATATAGTAAATCATTGATAATCTTATAGTAAATTAGTGATAATTTAGTATAAATCAC
TA
Found at i:26691320 original size:44 final size:43
Alignment explanation
Indices: 26691215--26691333 Score: 143
Period size: 44 Copynumber: 2.7 Consensus size: 43
26691205 TAATAGTATA
* *
26691215 TAGTAAATCATTGATAATTTTATAGTAAATTATTGATAATTTAG
1 TAGTAAATCACTGATAA-TTTATAGTAAATTATTGATAACTTAG
*
26691259 TAGTAAATCACTAATAATGTTATAGTAAATTATTGATAACTTAG
1 TAGTAAATCACTGATAAT-TTATAGTAAATTATTGATAACTTAG
* *
26691303 CTA-TAAATTAGTGATAATTTAGTA-TAAATTA
1 -TAGTAAATCACTGATAATTTA-TAGTAAATTA
26691334 ATAATGATTT
Statistics
Matches: 66, Mismatches: 6, Indels: 7
0.84 0.08 0.09
Matches are distributed among these distances:
43 11 0.17
44 53 0.80
45 2 0.03
ACGTcount: A:0.43, C:0.04, G:0.11, T:0.42
Consensus pattern (43 bp):
TAGTAAATCACTGATAATTTATAGTAAATTATTGATAACTTAG
Found at i:26691413 original size:22 final size:22
Alignment explanation
Indices: 26691371--26691430 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
26691361 TTATTAACAG
* *
26691371 CTTTTTAGTAAATCATCAATAA
1 CTTTATAGTAAATTATCAATAA
26691393 CTTTATAGTAAATTAGT-AATAA
1 CTTTATAGTAAATTA-TCAATAA
* *
26691415 TTTTATAATAAATTAT
1 CTTTATAGTAAATTAT
26691431 AGTAAATTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
21 1 0.03
22 31 0.94
23 1 0.03
ACGTcount: A:0.43, C:0.07, G:0.05, T:0.45
Consensus pattern (22 bp):
CTTTATAGTAAATTATCAATAA
Found at i:26691425 original size:11 final size:10
Alignment explanation
Indices: 26691395--26691490 Score: 66
Period size: 11 Copynumber: 8.9 Consensus size: 10
26691385 ATCAATAACT
*
26691395 TTATAGTAAA
1 TTATAATAAA
*
26691405 TTAGTAATAATT
1 TTA-TAATAA-A
26691417 TTATAATAAA
1 TTATAATAAA
*
26691427 TTATAGTAAA
1 TTATAATAAA
*
26691437 TTAGTAATAACT
1 TTA-TAATAA-A
26691449 TTATAATAAA
1 TTATAATAAA
* *
26691459 TTATCTATAAC
1 TTAT-AATAAA
*
26691470 TTAATAGTAAA
1 TT-ATAATAAA
26691481 TTATCAATAA
1 TTAT-AATAA
26691491 TTTAGTAGTA
Statistics
Matches: 66, Mismatches: 13, Indels: 13
0.72 0.14 0.14
Matches are distributed among these distances:
10 21 0.32
11 37 0.56
12 8 0.12
ACGTcount: A:0.49, C:0.04, G:0.05, T:0.42
Consensus pattern (10 bp):
TTATAATAAA
Found at i:26691433 original size:32 final size:32
Alignment explanation
Indices: 26691395--26691462 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
26691385 ATCAATAACT
*
26691395 TTATAGTAAATTAGTAATAATTTTATAATAAA
1 TTATAGTAAATTAGTAATAACTTTATAATAAA
26691427 TTATAGTAAATTAGTAATAACTTTATAATAAA
1 TTATAGTAAATTAGTAATAACTTTATAATAAA
26691459 TTAT
1 TTAT
26691463 CTATAACTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.49, C:0.01, G:0.06, T:0.44
Consensus pattern (32 bp):
TTATAGTAAATTAGTAATAACTTTATAATAAA
Found at i:26691503 original size:76 final size:74
Alignment explanation
Indices: 26691327--26691503 Score: 187
Period size: 76 Copynumber: 2.4 Consensus size: 74
26691317 TAATTTAGTA
* * * * * * *
26691327 TAAATTAATAATGATTTAGTTGTAAA-TTAGTTAATTATTAACAGCTTTTTAGTAAATCATCAAT
1 TAAATT-ATAATAATTTAGTAGTAAATTTAGTAAATTAGTAACAACTTTATAATAAATCATCAAT
*
26691391 AACTTTATAG
65 AACTTAATAG
* * * *
26691401 TAAATTAGTAATAATTTTA-TAATAAATTATAGTAAATTAGTAATAACTTTATAATAAATTATCT
1 TAAATTA-TAATAA-TTTAGTAGTAAATT-TAGTAAATTAGTAACAACTTTATAATAAATCATCA
26691465 ATAACTTAATAG
63 ATAACTTAATAG
26691477 TAAATTATCAATAATTTAGTAGTAAAT
1 TAAATTAT-AATAATTTAGTAGTAAAT
26691504 CATTTATAAG
Statistics
Matches: 84, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
73 1 0.01
74 16 0.19
75 10 0.12
76 57 0.68
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.42
Consensus pattern (74 bp):
TAAATTATAATAATTTAGTAGTAAATTTAGTAAATTAGTAACAACTTTATAATAAATCATCAATA
ACTTAATAG
Found at i:26691512 original size:22 final size:22
Alignment explanation
Indices: 26691422--26691567 Score: 100
Period size: 22 Copynumber: 6.7 Consensus size: 22
26691412 TAATTTTATA
* * *
26691422 ATAAATTA-TAGTAAATTAGTA
1 ATAACTTAGTAGTAAATTATTT
* *
26691443 ATAACTTTA-TAATAAATTATCT
1 ATAAC-TTAGTAGTAAATTATTT
* **
26691465 ATAACTTAATAGTAAATTATCA
1 ATAACTTAGTAGTAAATTATTT
* *
26691487 ATAATTTAGTAGTAAATCATTT
1 ATAACTTAGTAGTAAATTATTT
* * *
26691509 ATAAGTTAATAGTAAATCATTT
1 ATAACTTAGTAGTAAATTATTT
* *
26691531 ATAACTTAGT-GATAAATTAATG
1 ATAACTTAGTAG-TAAATTATTT
* *
26691553 ATAATTTAGAAGTAA
1 ATAACTTAGTAGTAA
26691568 TTAGTGCTAA
Statistics
Matches: 100, Mismatches: 21, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
21 8 0.08
22 91 0.91
23 1 0.01
ACGTcount: A:0.47, C:0.05, G:0.08, T:0.40
Consensus pattern (22 bp):
ATAACTTAGTAGTAAATTATTT
Found at i:26691540 original size:44 final size:44
Alignment explanation
Indices: 26691429--26691547 Score: 132
Period size: 44 Copynumber: 2.7 Consensus size: 44
26691419 ATAATAAATT
* *
26691429 ATAGTAAATTAGTAATAACTTTA-TAATAAATTATCTATAACTTA
1 ATAGTAAATTATTAATAAC-TTAGTAATAAATCATCTATAACTTA
* * * * *
26691473 ATAGTAAATTATCAATAATTTAGTAGTAAATCATTTATAAGTTA
1 ATAGTAAATTATTAATAACTTAGTAATAAATCATCTATAACTTA
* * *
26691517 ATAGTAAATCATTTATAACTTAGTGATAAAT
1 ATAGTAAATTATTAATAACTTAGTAATAAAT
26691548 TAATGATAAT
Statistics
Matches: 61, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
43 3 0.05
44 58 0.95
ACGTcount: A:0.46, C:0.06, G:0.08, T:0.40
Consensus pattern (44 bp):
ATAGTAAATTATTAATAACTTAGTAATAAATCATCTATAACTTA
Found at i:26691873 original size:23 final size:22
Alignment explanation
Indices: 26691844--26691922 Score: 88
Period size: 22 Copynumber: 3.5 Consensus size: 22
26691834 GTAAAGCATA
26691844 AATAACTTAGTAGTAATTCAATT
1 AATAACTTAGTAGTAATT-AATT
* *
26691867 GATAACTTAGTAGTAAATAATT
1 AATAACTTAGTAGTAATTAATT
*
26691889 AATAACTTAATAGCTAATT-ATT
1 AATAACTTAGTAG-TAATTAATT
* *
26691911 AAAAAGTTAGTA
1 AATAACTTAGTA
26691923 ATTGATCAAT
Statistics
Matches: 47, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
22 27 0.57
23 20 0.43
ACGTcount: A:0.47, C:0.06, G:0.10, T:0.37
Consensus pattern (22 bp):
AATAACTTAGTAGTAATTAATT
Found at i:26691881 original size:45 final size:46
Alignment explanation
Indices: 26691819--26691907 Score: 117
Period size: 45 Copynumber: 2.0 Consensus size: 46
26691809 ATTGTAATTT
* *
26691819 ATTGATAAATTAATAGTAAAGCATAAATAACTTAGTAG-TAATTCA
1 ATTGATAAATTAATAGTAAAGAATAAATAACTTAATAGCTAATTCA
* * * *
26691864 ATTGATAACTTAGTAGTAAATAATTAATAACTTAATAGCTAATT
1 ATTGATAAATTAATAGTAAAGAATAAATAACTTAATAGCTAATT
26691908 ATTAAAAAGT
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
45 32 0.86
46 5 0.14
ACGTcount: A:0.47, C:0.07, G:0.10, T:0.36
Consensus pattern (46 bp):
ATTGATAAATTAATAGTAAAGAATAAATAACTTAATAGCTAATTCA
Found at i:26691893 original size:22 final size:23
Alignment explanation
Indices: 26691844--26691897 Score: 83
Period size: 23 Copynumber: 2.4 Consensus size: 23
26691834 GTAAAGCATA
*
26691844 AATAACTTAGTAGTAATTCAATT
1 AATAACTTAGTAGTAAATCAATT
*
26691867 GATAACTTAGTAGTAAAT-AATT
1 AATAACTTAGTAGTAAATCAATT
26691889 AATAACTTA
1 AATAACTTA
26691898 ATAGCTAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
22 12 0.43
23 16 0.57
ACGTcount: A:0.46, C:0.07, G:0.09, T:0.37
Consensus pattern (23 bp):
AATAACTTAGTAGTAAATCAATT
Found at i:26692101 original size:22 final size:22
Alignment explanation
Indices: 26692076--26692216 Score: 124
Period size: 22 Copynumber: 6.4 Consensus size: 22
26692066 TGATAATTGT
* *
26692076 ATAGTAAATCATTTATAACTTC
1 ATAGTAAATCATTAATAACTTA
* * *
26692098 ATAGAAAATTAGTT-ATAACTTT
1 ATAGTAAATCA-TTAATAACTTA
* * *
26692120 ATAATAAATTATCAATAACTTA
1 ATAGTAAATCATTAATAACTTA
* * *
26692142 GTAGTAAATTATTCATAACTTA
1 ATAGTAAATCATTAATAACTTA
*
26692164 ATAGTAAATCATTAATAATTTA
1 ATAGTAAATCATTAATAACTTA
*
26692186 ATAATAAATCATTAATAA-TATA
1 ATAGTAAATCATTAATAACT-TA
*
26692208 ATAATAAAT
1 ATAGTAAAT
26692217 TAGTTATAAT
Statistics
Matches: 100, Mismatches: 16, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
21 2 0.02
22 96 0.96
23 2 0.02
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.39
Consensus pattern (22 bp):
ATAGTAAATCATTAATAACTTA
Found at i:26692160 original size:66 final size:66
Alignment explanation
Indices: 26692077--26692203 Score: 159
Period size: 66 Copynumber: 1.9 Consensus size: 66
26692067 GATAATTGTA
* * * *
26692077 TAGTAAATCATTTATAACTTCATAGAAAATTAGTT-ATAACTTT-ATAATAAATTATCAATAACT
1 TAGTAAATCATTCATAACTTAATAGAAAATCA-TTAATAA-TTTAATAATAAATCATCAATAACT
26692140 TAG
64 TAG
* * *
26692143 TAGTAAATTATTCATAACTTAATAGTAAATCATTAATAATTTAATAATAAATCATTAATAA
1 TAGTAAATCATTCATAACTTAATAGAAAATCATTAATAATTTAATAATAAATCATCAATAA
26692204 TATAATAATA
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 5 0.10
66 47 0.90
ACGTcount: A:0.48, C:0.08, G:0.05, T:0.39
Consensus pattern (66 bp):
TAGTAAATCATTCATAACTTAATAGAAAATCATTAATAATTTAATAATAAATCATCAATAACTTA
G
Found at i:26692216 original size:66 final size:66
Alignment explanation
Indices: 26692080--26692218 Score: 149
Period size: 66 Copynumber: 2.1 Consensus size: 66
26692070 AATTGTATAG
* * * * * *
26692080 TAAATCATTTATAACTTCATAGAAAATTAGTTATAACTTTATAATAAATTATCAATAACTTAGTA
1 TAAATTATTCATAACTTAATAGAAAATCAGTTATAACTTTATAATAAATCATCAATAACTTAATA
*
26692145 G
66 A
* *
26692146 TAAATTATTCATAACTTAATAGTAAATCA-TTAATAA-TTTAATAATAAATCATTAATAA-TATA
1 TAAATTATTCATAACTTAATAGAAAATCAGTT-ATAACTTT-ATAATAAATCATCAATAACT-TA
26692208 ATAA
63 ATAA
26692212 TAAATTA
1 TAAATTA
26692219 GTTATAATAA
Statistics
Matches: 61, Mismatches: 9, Indels: 6
0.80 0.12 0.08
Matches are distributed among these distances:
65 6 0.10
66 55 0.90
ACGTcount: A:0.50, C:0.07, G:0.04, T:0.40
Consensus pattern (66 bp):
TAAATTATTCATAACTTAATAGAAAATCAGTTATAACTTTATAATAAATCATCAATAACTTAATA
A
Found at i:26698535 original size:584 final size:577
Alignment explanation
Indices: 26697385--26698942 Score: 1649
Period size: 584 Copynumber: 2.7 Consensus size: 577
26697375 TGTACCTAAG
* * * * * * * * *
26697385 AAACCTAATAGCTTAACCTTTTGGTGGCTC-AGTGGTATCTAACATGTATGTATAAGCTTTCTTG
1 AAACCTAATAGCTTAAGC-TTTAG-GACTCAAGTGATGTCCAACATGTATGTATAGGCTCTCTAG
* * * * ** * * * *
26697449 TGTGCTCTTATGGGTTCTAAGTGTGAATTATCTCTCTAACAAGTGGTATCAGAG-TCAAGGTTAT
64 TGTGCTCTCATAGGCTCCAAGTGTGGTTTATCTCCCCAACAAGTGGTATCAAAGCTC-AGGTTAC
* * * * * * *
26697513 GAT-GAGTTCAAGTCCCAGTAGTGTTGCTAGGTG-GAGATTATTAACAGATC-AGAGGTT-GATC
128 GATAG-GTTCAAGTCTCAGTGGTATTGCTAGG-GAGAGATTATTGACAAATCGA-AGGTTGGCTG
* * * * * * **
26697574 ACGTCTATCAACTCTATGTACTTG-A-A-CAATATTAAAAAGTTTAACTTGGATGCAGTGAGT-T
190 A--TCCATCAACTCCATGTGCTTGAACACCAATATTAAAAGGTTCAACTTGGATACAACGAGTCT
* * * * *
26697635 -T-ATAATA-AT-ATACAAAAATGAAACACCCAAATAGGCAATATGTTGAATCAATCTGGAGTGC
253 ATGATAATATGTAAAAGAAAAATGGAACACCCAAAT-GG-AATATGTTGAGTCAATCTGGAGTGC
* * * * * * * **
26697696 AAGCTTAAGGGAGCATTGAGACAACCTAGGTGGCAAGGTTGAGTGCTGTGACCTAGCCCAAAAAT
316 AAGCTTGAGGGAGCACTAAGATAACCTAGGTGGCAAGGTTGAGTGCTGTGGCCTGGCTCAAAAGC
* * * ** * *
26697761 GCACTAGAGATATAAGGTTGTCTTGCTCAAATGAGGTGTTGATAGAACTTACTCACACGGGGGAG
381 GCACTAGAGATGTAAGGTTGCCTGGCTCAAAAAAGATATTGATAGAACTTACTCACACGGGGGAG
* * * * * * *
26697826 CCAAGGTGGGAATTGATTAGAACTCACAAGTGAATGGGAGAGATTGTTGGGATATGGTTCACAAG
446 CCAACGTGGGAACTGATCAGAACTCACAAGTGAATGGAAAAGATTATTGGGATATGATTCACAAG
* * *
26697891 TGAGTAAAGAATCCCACATTATTAGAAAATCTGAATGAGATGTCTTATATATGTATGAAGGAACG
511 TGAGTAAAGAATCCCACATCATTAGAAAATCTGAATGAGATATCTTATATATGCATGAAGGAACG
26697956 AA
576 AA
* * *
26697958 GAACCTAATAGCTTAAGCTCTTAGG-CTCAAGTGATGTTCAACATGTATGTATATGCTCTCT-GA
1 AAACCTAATAGCTTAAGCT-TTAGGACTCAAGTGATGTCCAACATGTATGTATAGGCTCTCTAG-
* * * *
26698021 TGTGCTCTTATGGGCTCCAAGTGTGGTTTATCTCCCCAATAAGTGGTATCAAAGC-CATGGTTAT
64 TGTGCTCTCATAGGCTCCAAGTGTGGTTTATCTCCCCAACAAGTGGTATCAAAGCTCA-GGTTAC
* * * * **
26698085 GATAGGTTCGAGTC-CTAGTGGTGTTGTTAAGGGAGAGATTGTTGGTAAATCGAAGGTTGGTCGT
128 GATAGGTTCAAGTCTC-AGTGGTATTGCT-AGGGAGAGATTATTGACAAATCGAAGGTTGG-C-T
* * * *
26698149 G-TCCATCAACTCCATGTGCTTGAACGCCAATATTAAAAGGTTCGACTTGGATGCAATGAGTCTA
189 GATCCATCAACTCCATGTGCTTGAACACCAATATTAAAAGGTTCAACTTGGATACAACGAGTCTA
* * *
26698213 TGATAATATGTAAAAATGATAAAAATGGAACACCCAAATGGATGATGTGTTGAGTTAATCTGGAA
254 TGATAATATGT-AAAA-G--AAAAATGGAACACCCAAATGGA--ATATGTTGAGTCAATCTGGAG
*
26698278 TGCAAGCTTGAGGGAGCACTAAGATAACCTAGGTGGTAAGGTTGAGTGCTGTGGCCTGGCTCAAA
313 TGCAAGCTTGAGGGAGCACTAAGATAACCTAGGTGGCAAGGTTGAGTGCTGTGGCCTGGCTCAAA
* * **
26698343 AGCGTACTAGAGATGTAAGGTTGCCTGGCTTAAAAAAGATATTGATA-AGACTTACTTGCAC-GG
378 AGCGCACTAGAGATGTAAGGTTGCCTGGCTCAAAAAAGATATTGATAGA-ACTTACTCACACGGG
26698406 GGAGCCAACGTGGGAACTGATCAGAACTCACAAGTGAATGGAAAAGATTATTGGGATATGATTCA
442 GGAGCCAACGTGGGAACTGATCAGAACTCACAAGTGAATGGAAAAGATTATTGGGATATGATTCA
* *
26698471 TATGTGAGTAAAGAATCCCACATCATTAGAAAATCTGAATGAGATATCTTATATATGCATGAAGG
507 CAAGTGAGTAAAGAATCCCACATCATTAGAAAATCTGAATGAGATATCTTATATATGCATGAAGG
* *
26698536 ACCTAA
572 AACGAA
* *
26698542 AAACCTAATAGCTTAAGCTTTTGGACTCAAGTGATGTCCAACATGTATGTTTAGGCTCTCTAGTG
1 AAACCTAATAGCTTAAGCTTTAGGACTCAAGTGATGTCCAACATGTATGTATAGGCTCTCTAGTG
* * * *
26698607 TGCTCTCATAGTCTCCAAGTGTGGTTTATCTTCCCAACAAGTGGTATCAGAGCTGAGGTTACGAT
66 TGCTCTCATAGGCTCCAAGTGTGGTTTATCTCCCCAACAAGTGGTATCAAAGCTCAGGTTACGAT
* * * *
26698672 GGGTTTAAGTCTCAGTGGTATTGCTAGGGGGAGATTATTGACAGATCGAAGGTTGGCTGCATCCA
131 AGGTTCAAGTCTCAGTGGTATTGCTAGGGAGAGATTATTGACAAATCGAAGGTTGGCTG-ATCCA
* ** * *
26698737 TCAACTTCATGTGCTTGAACACTGATATTAAAAGGTTCAACTTGTATACAGCGAGTCTATGATAA
195 TCAACTCCATGTGCTTGAACACCAATATTAAAAGGTTCAACTTGGATACAACGAGTCTATGATAA
*
26698802 TATGTAAAAG-----TGGAACACCCAAGTGGGCAATATGTTGAGTCAA-CTTGGAGTGCAAGCTT
260 TATGTAAAAGAAAAATGGAACACCCAAAT-GG-AATATGTTGAGTCAATC-TGGAGTGCAAGCTT
** * *
26698861 GAAAGAGCACTAAGATAACCTAGGTGGCAAGGTTGAGTGCTGTGGCCTGGCTCAAAAGCCCATTA
322 GAGGGAGCACTAAGATAACCTAGGTGGCAAGGTTGAGTGCTGTGGCCTGGCTCAAAAGCGCACTA
26698926 GAGATGTAAGGTTGCCT
387 GAGATGTAAGGTTGCCT
26698943 AGGTGACAAA
Statistics
Matches: 828, Mismatches: 120, Indels: 73
0.81 0.12 0.07
Matches are distributed among these distances:
571 6 0.01
572 103 0.12
573 59 0.07
574 117 0.14
575 2 0.00
576 32 0.04
577 1 0.00
578 1 0.00
579 6 0.01
580 1 0.00
581 3 0.00
582 7 0.01
583 96 0.12
584 253 0.31
585 141 0.17
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (577 bp):
AAACCTAATAGCTTAAGCTTTAGGACTCAAGTGATGTCCAACATGTATGTATAGGCTCTCTAGTG
TGCTCTCATAGGCTCCAAGTGTGGTTTATCTCCCCAACAAGTGGTATCAAAGCTCAGGTTACGAT
AGGTTCAAGTCTCAGTGGTATTGCTAGGGAGAGATTATTGACAAATCGAAGGTTGGCTGATCCAT
CAACTCCATGTGCTTGAACACCAATATTAAAAGGTTCAACTTGGATACAACGAGTCTATGATAAT
ATGTAAAAGAAAAATGGAACACCCAAATGGAATATGTTGAGTCAATCTGGAGTGCAAGCTTGAGG
GAGCACTAAGATAACCTAGGTGGCAAGGTTGAGTGCTGTGGCCTGGCTCAAAAGCGCACTAGAGA
TGTAAGGTTGCCTGGCTCAAAAAAGATATTGATAGAACTTACTCACACGGGGGAGCCAACGTGGG
AACTGATCAGAACTCACAAGTGAATGGAAAAGATTATTGGGATATGATTCACAAGTGAGTAAAGA
ATCCCACATCATTAGAAAATCTGAATGAGATATCTTATATATGCATGAAGGAACGAA
Found at i:26698947 original size:61 final size:61
Alignment explanation
Indices: 26698879--26699062 Score: 242
Period size: 61 Copynumber: 3.0 Consensus size: 61
26698869 ACTAAGATAA
* *
26698879 CCTAGGTGGCAAGGTTGAGTGCTGTGGCCTGGCTCAAAAGCCCATTAGAGATGTAAGGTTG
1 CCTAGGTGGCAAGGTTGAATGCTGTGGCCTGGCTCAAAAGCACATTAGAGATGTAAGGTTG
* * * * *
26698940 CCTAGGTGACAAAGTTGAATGCTGTGGCCTAGCTTAAAAGCACATTAAAGATGTAAGGTTG
1 CCTAGGTGGCAAGGTTGAATGCTGTGGCCTGGCTCAAAAGCACATTAGAGATGTAAGGTTG
* * * * * * *
26699001 TCTAGGTGGCAAGGTTGAATGTTGTGGCCTGACCCAAAAACACACTAGAGATGTACGGTTG
1 CCTAGGTGGCAAGGTTGAATGCTGTGGCCTGGCTCAAAAGCACATTAGAGATGTAAGGTTG
26699062 C
1 C
26699063 TTGGTTCAGA
Statistics
Matches: 103, Mismatches: 20, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
61 103 1.00
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (61 bp):
CCTAGGTGGCAAGGTTGAATGCTGTGGCCTGGCTCAAAAGCACATTAGAGATGTAAGGTTG
Found at i:26699136 original size:25 final size:25
Alignment explanation
Indices: 26699092--26699168 Score: 127
Period size: 25 Copynumber: 3.0 Consensus size: 25
26699082 GATAGGACTT
*
26699092 ACTCACATGGGGGGAGCCAAGGTGAG
1 ACTCACAT-GAGGGAGCCAAGGTGAG
26699118 ACTCACATGAGGGAGCCAAGGTGAG
1 ACTCACATGAGGGAGCCAAGGTGAG
*
26699143 ACTCACATGAAGGAGCCAAGGTGAG
1 ACTCACATGAGGGAGCCAAGGTGAG
26699168 A
1 A
26699169 ATTGATCAAA
Statistics
Matches: 49, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
25 41 0.84
26 8 0.16
ACGTcount: A:0.32, C:0.19, G:0.36, T:0.12
Consensus pattern (25 bp):
ACTCACATGAGGGAGCCAAGGTGAG
Found at i:26700556 original size:172 final size:172
Alignment explanation
Indices: 26700266--26700611 Score: 593
Period size: 172 Copynumber: 2.0 Consensus size: 172
26700256 GGATATAGTT
26700266 CACATGTGAGTAAAGAATCTTACATCATTAGAAAATCTGAATGAAATGTCCTATATATGTATGAA
1 CACATGTGAGTAAAGAATCTTACATCATTAGAAAATCTGAATGAAATGTCCTATATATGTATGAA
*
26700331 AGACCCAAAAACCTAATAGCTTAAGTTTTTGAGCTCAAATAGTATCCAACATGTATGTATAAGCT
66 AGACCCAAAAACCTAATAGCTTAAGCTTTTGAGCTCAAATAGTATCCAACATGTATGTATAAGCT
*
26700396 CTCTAGTGTGCTCCCACAGGCTCCAAATATATGCATGAAGGA
131 ATCTAGTGTGCTCCCACAGGCTCCAAATATATGCATGAAGGA
*
26700438 CACATGTGAGTAAAGAATCTTACATCATTAGAAAATCTGAATGAGATGTCCTATATATGTATGAA
1 CACATGTGAGTAAAGAATCTTACATCATTAGAAAATCTGAATGAAATGTCCTATATATGTATGAA
* * * *
26700503 GGACTCAAAAACCTAATAGCTTAAGCTTTTGAGCTCAAATAGTGTCTAACATGTATGTATAAGCT
66 AGACCCAAAAACCTAATAGCTTAAGCTTTTGAGCTCAAATAGTATCCAACATGTATGTATAAGCT
** * *
26700568 ATCTAGTGTGCTCTTATAGGCTTCAAATATATGCATGAAGGA
131 ATCTAGTGTGCTCCCACAGGCTCCAAATATATGCATGAAGGA
26700610 CA
1 CA
26700612 TCATTAGAAA
Statistics
Matches: 163, Mismatches: 11, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
172 163 1.00
ACGTcount: A:0.37, C:0.16, G:0.17, T:0.30
Consensus pattern (172 bp):
CACATGTGAGTAAAGAATCTTACATCATTAGAAAATCTGAATGAAATGTCCTATATATGTATGAA
AGACCCAAAAACCTAATAGCTTAAGCTTTTGAGCTCAAATAGTATCCAACATGTATGTATAAGCT
ATCTAGTGTGCTCCCACAGGCTCCAAATATATGCATGAAGGA
Found at i:26711041 original size:19 final size:18
Alignment explanation
Indices: 26710999--26711041 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
26710989 TTTGAAACTT
26710999 CTTTTTTTTTTTTTTGTA
1 CTTTTTTTTTTTTTTGTA
26711017 CATTTTTTTTATTTTTT-TA
1 C-TTTTTTTT-TTTTTTGTA
26711036 -TTTTTT
1 CTTTTTT
26711042 CATCCAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
17 6 0.26
18 1 0.04
19 10 0.43
20 6 0.26
ACGTcount: A:0.09, C:0.05, G:0.02, T:0.84
Consensus pattern (18 bp):
CTTTTTTTTTTTTTTGTA
Found at i:26711631 original size:13 final size:11
Alignment explanation
Indices: 26711602--26711626 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
26711592 TGTTTTAATG
26711602 AATGGTAAAAA
1 AATGGTAAAAA
26711613 AATGGTAAAAA
1 AATGGTAAAAA
26711624 AAT
1 AAT
26711627 ATGGTCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.64, C:0.00, G:0.16, T:0.20
Consensus pattern (11 bp):
AATGGTAAAAA
Found at i:26715132 original size:47 final size:47
Alignment explanation
Indices: 26715077--26715188 Score: 147
Period size: 46 Copynumber: 2.4 Consensus size: 47
26715067 ATTTTACAAG
* *
26715077 TTTTATTTCTAAATTTTCTACAATTTTGGTCAATTTAG-AATTTTCT-
1 TTTTATTTCTAAATTTT-TACAATTTGGGTCAATTTAGAAATCTTCTC
* *
26715123 TTTTGATTTCTAAATTTTTACTATTTGGGTCTATTTAGAAATCTTCTC
1 TTTT-ATTTCTAAATTTTTACAATTTGGGTCAATTTAGAAATCTTCTC
26715171 TTTTAATTTCTAAATTTT
1 TTTT-ATTTCTAAATTTT
26715189 GCACCATTAA
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
46 21 0.36
47 20 0.34
48 17 0.29
ACGTcount: A:0.25, C:0.11, G:0.07, T:0.57
Consensus pattern (47 bp):
TTTTATTTCTAAATTTTTACAATTTGGGTCAATTTAGAAATCTTCTC
Found at i:26715582 original size:18 final size:20
Alignment explanation
Indices: 26715548--26715584 Score: 60
Period size: 18 Copynumber: 1.9 Consensus size: 20
26715538 ATCCTCGGGT
26715548 AATTATTATTCAAATTTCAA
1 AATTATTATTCAAATTTCAA
26715568 AATT-TTATT-AAATTTCA
1 AATTATTATTCAAATTTCA
26715585 TGTTTTTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 8 0.47
19 5 0.29
20 4 0.24
ACGTcount: A:0.43, C:0.08, G:0.00, T:0.49
Consensus pattern (20 bp):
AATTATTATTCAAATTTCAA
Found at i:26715873 original size:81 final size:79
Alignment explanation
Indices: 26715775--26716008 Score: 380
Period size: 81 Copynumber: 2.9 Consensus size: 79
26715765 TCAAAACAAT
* *
26715775 TTATTTTGTTTTATATATTTTTTATTTTTGGTAAAATTTAATCATGTAAAAATACTTAAAAAATA
1 TTATTTTGTTTTATATATTTTTTATTTTT-CTAAAATTTAATCATGCAAAAATACTTAAAAAATA
26715840 AATAAAAATAAAAAAA
65 AATAAAAAT-AAAAAA
* *
26715856 TTATTTTGTTTTTTATATTTTTTACTTTTCCTAAAATTTAATCATGCAAAAATACTTAAAATAAA
1 TTATTTTGTTTTATATATTTTTTA-TTTTTCTAAAATTTAATCATGCAAAAATACTT-AAA-AAA
26715921 TAAAT-AAAATAAAAAA
63 TAAATAAAAATAAAAAA
26715937 TTATTTTGTTTTATATATTTTTTATTTTTCTAAAATTTAATCATGCAAAAATACTTAAAAAATAA
1 TTATTTTGTTTTATATATTTTTTATTTTTCTAAAATTTAATCATGCAAAAATACTTAAAAAATAA
26716002 ATAAAAA
66 ATAAAAA
26716009 ATATCAAAAA
Statistics
Matches: 143, Mismatches: 6, Indels: 10
0.90 0.04 0.06
Matches are distributed among these distances:
78 8 0.06
79 7 0.05
80 31 0.22
81 77 0.54
82 12 0.08
83 8 0.06
ACGTcount: A:0.46, C:0.05, G:0.03, T:0.45
Consensus pattern (79 bp):
TTATTTTGTTTTATATATTTTTTATTTTTCTAAAATTTAATCATGCAAAAATACTTAAAAAATAA
ATAAAAATAAAAAA
Found at i:26716828 original size:15 final size:16
Alignment explanation
Indices: 26716801--26716852 Score: 61
Period size: 15 Copynumber: 3.1 Consensus size: 16
26716791 TGGCCAAATG
26716801 TTTATTATTTTTATTA
1 TTTATTATTTTTATTA
26716817 TTTATT-TTTTTATTA
1 TTTATTATTTTTATTA
26716832 TCATTATTATCTTATTATTA
1 T--TTATTAT-TT-TTATTA
26716852 T
1 T
26716853 CCTAACATCT
Statistics
Matches: 31, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
15 10 0.32
16 6 0.19
17 5 0.16
18 1 0.03
19 2 0.06
20 7 0.23
ACGTcount: A:0.25, C:0.04, G:0.00, T:0.71
Consensus pattern (16 bp):
TTTATTATTTTTATTA
Found at i:26716838 original size:24 final size:25
Alignment explanation
Indices: 26716801--26716847 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
26716791 TGGCCAAATG
**
26716801 TTTATTATTTTTATTAT-TTATTTT
1 TTTATTATCATTATTATCTTATTTT
26716825 TTTATTATCATTATTATCTTATT
1 TTTATTATCATTATTATCTTATT
26716848 ATTATCCTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
24 15 0.75
25 5 0.25
ACGTcount: A:0.23, C:0.04, G:0.00, T:0.72
Consensus pattern (25 bp):
TTTATTATCATTATTATCTTATTTT
Found at i:26716849 original size:20 final size:21
Alignment explanation
Indices: 26716802--26716853 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 21
26716792 GGCCAAATGT
* * *
26716802 TTATTATTTTTATTATTTATT
1 TTATTATTATCATTATTTATC
*
26716823 TTTTTATTATCATTA-TTATC
1 TTATTATTATCATTATTTATC
26716843 TTATTATTATC
1 TTATTATTATC
26716854 CTAACATCTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
20 14 0.54
21 12 0.46
ACGTcount: A:0.25, C:0.06, G:0.00, T:0.69
Consensus pattern (21 bp):
TTATTATTATCATTATTTATC
Found at i:26723601 original size:16 final size:16
Alignment explanation
Indices: 26723532--26723601 Score: 63
Period size: 16 Copynumber: 4.4 Consensus size: 16
26723522 ATTTTACTAT
26723532 AATAAACTAATAAATA
1 AATAAACTAATAAATA
*
26723548 AACAAACTAATAAAT-
1 AATAAACTAATAAATA
** *
26723563 AATAAA-TTTTATTATA
1 AATAAACTAATA-AATA
*
26723579 TAATAAACTACTAAATA
1 -AATAAACTAATAAATA
26723596 AATAAA
1 AATAAA
26723602 TTTTAATATT
Statistics
Matches: 42, Mismatches: 8, Indels: 8
0.72 0.14 0.14
Matches are distributed among these distances:
14 3 0.07
15 7 0.17
16 20 0.48
17 9 0.21
18 3 0.07
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (16 bp):
AATAAACTAATAAATA
Found at i:26723618 original size:33 final size:32
Alignment explanation
Indices: 26723551--26723618 Score: 93
Period size: 33 Copynumber: 2.1 Consensus size: 32
26723541 ATAAATAAAC
*
26723551 AAACTAATAAATAATAAATTTTATTATATAAT
1 AAACTAATAAATAATAAATTTTAATATATAAT
*
26723583 AAACTACTAAATAAATAAATTTTAATAT-TATAT
1 AAACTAATAAAT-AATAAATTTTAATATATA-AT
26723616 AAA
1 AAA
26723619 AATTTTGGAG
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
32 13 0.41
33 19 0.59
ACGTcount: A:0.57, C:0.04, G:0.00, T:0.38
Consensus pattern (32 bp):
AAACTAATAAATAATAAATTTTAATATATAAT
Found at i:26732231 original size:18 final size:16
Alignment explanation
Indices: 26732200--26732238 Score: 51
Period size: 18 Copynumber: 2.3 Consensus size: 16
26732190 GCATGAATTG
26732200 AGAAAAAAGAAAAGAA
1 AGAAAAAAGAAAAGAA
*
26732216 GGAAAAAAGATGAAAGAA
1 AGAAAAAAGA--AAAGAA
26732234 AGAAA
1 AGAAA
26732239 GTTGATTGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
16 9 0.47
18 10 0.53
ACGTcount: A:0.74, C:0.00, G:0.23, T:0.03
Consensus pattern (16 bp):
AGAAAAAAGAAAAGAA
Found at i:26732647 original size:17 final size:16
Alignment explanation
Indices: 26732603--26732647 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
26732593 AAAAAAAAGG
26732603 GAAAAGAAAAAGAAAT
1 GAAAAGAAAAAGAAAT
26732619 GAGAACA-AAAAAGAAAT
1 GA-AA-AGAAAAAGAAAT
26732636 GAAAAGATAAAA
1 GAAAAGA-AAAA
26732648 AAAAAACATG
Statistics
Matches: 25, Mismatches: 0, Indels: 7
0.78 0.00 0.22
Matches are distributed among these distances:
15 1 0.04
16 5 0.20
17 18 0.72
18 1 0.04
ACGTcount: A:0.73, C:0.02, G:0.18, T:0.07
Consensus pattern (16 bp):
GAAAAGAAAAAGAAAT
Found at i:26732918 original size:7 final size:7
Alignment explanation
Indices: 26732906--26732945 Score: 53
Period size: 7 Copynumber: 5.7 Consensus size: 7
26732896 GAAACAATCC
26732906 AAAAAGA
1 AAAAAGA
26732913 AAAAAGA
1 AAAAAGA
* *
26732920 AAAGACA
1 AAAAAGA
*
26732927 AAGAAGA
1 AAAAAGA
26732934 AAAAAGA
1 AAAAAGA
26732941 AAAAA
1 AAAAA
26732946 AAATGAATGA
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
7 27 1.00
ACGTcount: A:0.82, C:0.03, G:0.15, T:0.00
Consensus pattern (7 bp):
AAAAAGA
Found at i:26732935 original size:21 final size:20
Alignment explanation
Indices: 26732905--26732943 Score: 69
Period size: 21 Copynumber: 1.9 Consensus size: 20
26732895 TGAAACAATC
26732905 CAAAAAGAAAAAAGAAAAGA
1 CAAAAAGAAAAAAGAAAAGA
26732925 CAAAGAAGAAAAAAGAAAA
1 CAAA-AAGAAAAAAGAAAA
26732944 AAAAATGAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.22
21 14 0.78
ACGTcount: A:0.79, C:0.05, G:0.15, T:0.00
Consensus pattern (20 bp):
CAAAAAGAAAAAAGAAAAGA
Found at i:26734223 original size:66 final size:65
Alignment explanation
Indices: 26734117--26734355 Score: 176
Period size: 66 Copynumber: 3.6 Consensus size: 65
26734107 CAGACCTAGT
* * * * * * * * *
26734117 TATTTTCAACCTCAGTTCAATCTAGGTCATTTAAATTTTTGACTTGCGATTTGGTTTTGATCAT-
1 TATTTTCGACCTTAGTTCAATCCAAGTCATTTAATTTTTTGACCTGCGATTTAGTCTCGATCATC
* *
26734181 TCATTTTTCGACCTTAGTTCAATCCAAGTCATTTAATTTTTTGACCTGTGATTTAGTCTCGGTCA
1 T-A-TTTTCGACCTTAGTTCAATCCAAGTCATTTAATTTTTTGACCTGCGATTTAGTCTCGATCA
26734246 TC
64 TC
* * * * * * * * * *
26734248 TATTTTGGATCTTGGTTCAATCC-AGATCATTTAATTTTTTAAACTTGTGGTTCAATCTCAATCA
1 TATTTTCGACCTTAGTTCAATCCAAG-TCATTTAATTTTTT-GACCTGCGATTTAGTCTCGATCA
26734312 TTC
64 -TC
* * * * *
26734315 TTATTTACGACCTCAATTCAGTCCAAGACATTTAATTTTTT
1 -TATTTTCGACCTTAGTTCAATCCAAGTCATTTAATTTTTT
26734356 TTGACTTATA
Statistics
Matches: 138, Mismatches: 29, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
64 3 0.02
65 33 0.24
66 68 0.49
67 3 0.02
68 29 0.21
69 2 0.01
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.46
Consensus pattern (65 bp):
TATTTTCGACCTTAGTTCAATCCAAGTCATTTAATTTTTTGACCTGCGATTTAGTCTCGATCATC
Found at i:26734568 original size:33 final size:33
Alignment explanation
Indices: 26734531--26734638 Score: 94
Period size: 33 Copynumber: 3.3 Consensus size: 33
26734521 TCAAGCCACC
*
26734531 TTCATTTTTTGAACTTGGCTCAATCTAATCATT
1 TTCATTTTTTGACCTTGGCTCAATCTAATCATT
* *** * * *
26734564 TTCATTTTTCGACCCAAGTTTAATCTGATCACTT
1 TTCATTTTTTGACCTTGGCTCAATCTAATCA-TT
* **
26734598 TT-A-TATTTGACCTTGGCTCAATCTAATCACG
1 TTCATTTTTTGACCTTGGCTCAATCTAATCATT
26734629 TTCATTTTTT
1 TTCATTTTTT
26734639 ACTTTAATTC
Statistics
Matches: 53, Mismatches: 19, Indels: 6
0.68 0.24 0.08
Matches are distributed among these distances:
31 2 0.04
32 19 0.36
33 28 0.53
34 4 0.08
ACGTcount: A:0.23, C:0.20, G:0.09, T:0.47
Consensus pattern (33 bp):
TTCATTTTTTGACCTTGGCTCAATCTAATCATT
Found at i:26734775 original size:32 final size:32
Alignment explanation
Indices: 26734659--26734774 Score: 124
Period size: 34 Copynumber: 3.5 Consensus size: 32
26734649 AATCCAAATT
* *
26734659 ATTTTATTTTTCAACTTCGGCTAAGTTCAAGTT
1 ATTTTATTTTTCAACTTCGGCTAA-ATCAAGTC
* * *
26734692 ATTTCATTTTTTCGACTTCGGCTGAAATTAAGTC
1 ATTTTA-TTTTTCAACTTCGGCT-AAATCAAGTC
* * *
26734726 ATTTTGTTTTCCAACTTTGGCTAAATCAAGTC
1 ATTTTATTTTTCAACTTCGGCTAAATCAAGTC
*
26734758 ATTTTATTTTTCGACTT
1 ATTTTATTTTTCAACTT
26734775 TTCTAATTTC
Statistics
Matches: 67, Mismatches: 14, Indels: 5
0.78 0.16 0.06
Matches are distributed among these distances:
32 23 0.34
33 18 0.27
34 24 0.36
35 2 0.03
ACGTcount: A:0.23, C:0.16, G:0.12, T:0.48
Consensus pattern (32 bp):
ATTTTATTTTTCAACTTCGGCTAAATCAAGTC
Found at i:26736702 original size:18 final size:20
Alignment explanation
Indices: 26736669--26736709 Score: 59
Period size: 19 Copynumber: 2.1 Consensus size: 20
26736659 TACATTTTTT
*
26736669 AATTTTATTTGTTT-AATAA
1 AATTTTATTAGTTTAAATAA
26736688 AATTTT-TTAGTTTAAATAA
1 AATTTTATTAGTTTAAATAA
26736707 AAT
1 AAT
26736710 AAAATAATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 6 0.30
19 14 0.70
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.54
Consensus pattern (20 bp):
AATTTTATTAGTTTAAATAA
Found at i:26738483 original size:21 final size:22
Alignment explanation
Indices: 26738436--26738483 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 22
26738426 GAAGCTCTAG
*
26738436 AAAAAGAAAAGGAAAAGAGAGA
1 AAAAAGAAAAGGAAAAGAAAGA
*
26738458 GAAAAG-AAAGGAAAA-ATAAGA
1 AAAAAGAAAAGGAAAAGA-AAGA
26738479 AAAAA
1 AAAAA
26738484 AATATGGTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 1 0.05
21 16 0.73
22 5 0.23
ACGTcount: A:0.75, C:0.00, G:0.23, T:0.02
Consensus pattern (22 bp):
AAAAAGAAAAGGAAAAGAAAGA
Found at i:26738655 original size:19 final size:19
Alignment explanation
Indices: 26738631--26738674 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
26738621 GTTGGAGCTA
*
26738631 TTGACTACATTGACCAGAG
1 TTGACTACATTGACCAAAG
*
26738650 TTGACTACATTTACCAAAG
1 TTGACTACATTGACCAAAG
26738669 TTGACT
1 TTGACT
26738675 CAGCCTTTTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (19 bp):
TTGACTACATTGACCAAAG
Found at i:26740608 original size:18 final size:19
Alignment explanation
Indices: 26740575--26740613 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
26740565 ATTTGGGTTA
*
26740575 AAGATTTAAATCAAAT-TT
1 AAGATTTAAATAAAATCTT
*
26740593 AAGATTTAATTAAAATCTT
1 AAGATTTAAATAAAATCTT
26740612 AA
1 AA
26740614 TTTTTATGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 14 0.78
19 4 0.22
ACGTcount: A:0.51, C:0.05, G:0.05, T:0.38
Consensus pattern (19 bp):
AAGATTTAAATAAAATCTT
Found at i:26742759 original size:16 final size:16
Alignment explanation
Indices: 26742725--26742765 Score: 57
Period size: 18 Copynumber: 2.5 Consensus size: 16
26742715 AGAACAGTAA
26742725 GTTTGATATATTACTTT
1 GTTTGATATATTAC-TT
26742742 GTTTTGATATATTA-TT
1 G-TTTGATATATTACTT
26742758 GTTTGATA
1 GTTTGATA
26742766 AAATGATTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 7 0.30
16 3 0.13
17 1 0.04
18 12 0.52
ACGTcount: A:0.24, C:0.02, G:0.15, T:0.59
Consensus pattern (16 bp):
GTTTGATATATTACTT
Found at i:26746102 original size:19 final size:19
Alignment explanation
Indices: 26746078--26746123 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
26746068 GTCATTTTGG
*
26746078 AGTGAAATTGATTTCATGA
1 AGTGAAAATGATTTCATGA
26746097 AGTGAAAATGATTTCATGA
1 AGTGAAAATGATTTCATGA
26746116 AGTGAAAA
1 AGTGAAAA
26746124 GAGGAATACT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.43, C:0.04, G:0.22, T:0.30
Consensus pattern (19 bp):
AGTGAAAATGATTTCATGA
Found at i:26746633 original size:18 final size:18
Alignment explanation
Indices: 26746607--26746652 Score: 51
Period size: 17 Copynumber: 2.7 Consensus size: 18
26746597 ATCCTTAACC
*
26746607 AAAAGAGAAGAAACAAAA
1 AAAAAAGAAGAAACAAAA
* *
26746625 AAAAAAGAA-AAAGAAAC
1 AAAAAAGAAGAAACAAAA
26746642 AAAAAA-AAGAA
1 AAAAAAGAAGAA
26746653 GGAATGAATA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
16 2 0.08
17 14 0.58
18 8 0.33
ACGTcount: A:0.83, C:0.04, G:0.13, T:0.00
Consensus pattern (18 bp):
AAAAAAGAAGAAACAAAA
Found at i:26751076 original size:3 final size:3
Alignment explanation
Indices: 26751068--26751116 Score: 98
Period size: 3 Copynumber: 16.3 Consensus size: 3
26751058 TTTAATTAAG
26751068 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
26751116 T
1 T
26751117 GTTTCCTTTT
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:26751622 original size:12 final size:12
Alignment explanation
Indices: 26751585--26751628 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
26751575 GATCCAAGAA
26751585 TTTTTTAGGAA-
1 TTTTTTAGGAAT
* *
26751596 TTTTTTAAGATT
1 TTTTTTAGGAAT
*
26751608 TTTTTTTGGAAT
1 TTTTTTAGGAAT
26751620 TTTTTTAGG
1 TTTTTTAGG
26751629 TTTTCTGGGT
Statistics
Matches: 26, Mismatches: 6, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
11 9 0.35
12 17 0.65
ACGTcount: A:0.20, C:0.00, G:0.16, T:0.64
Consensus pattern (12 bp):
TTTTTTAGGAAT
Found at i:26751625 original size:11 final size:11
Alignment explanation
Indices: 26751582--26751624 Score: 50
Period size: 11 Copynumber: 3.8 Consensus size: 11
26751572 GATGATCCAA
26751582 GAATTTTTTAG
1 GAATTTTTTAG
*
26751593 GAATTTTTTAA
1 GAATTTTTTAG
* *
26751604 GATTTTTTTTTG
1 GA-ATTTTTTAG
26751616 GAATTTTTT
1 GAATTTTTT
26751625 TAGGTTTTCT
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
11 18 0.69
12 8 0.31
ACGTcount: A:0.23, C:0.00, G:0.14, T:0.63
Consensus pattern (11 bp):
GAATTTTTTAG
Found at i:26760074 original size:27 final size:27
Alignment explanation
Indices: 26760044--26760099 Score: 103
Period size: 27 Copynumber: 2.1 Consensus size: 27
26760034 TATACCTAGA
*
26760044 ATATAGAAGAACTTGCTAATATTAGCT
1 ATATAGAAGAACTTCCTAATATTAGCT
26760071 ATATAGAAGAACTTCCTAATATTAGCT
1 ATATAGAAGAACTTCCTAATATTAGCT
26760098 AT
1 AT
26760100 CAATTTTATA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34
Consensus pattern (27 bp):
ATATAGAAGAACTTCCTAATATTAGCT
Found at i:26762429 original size:16 final size:16
Alignment explanation
Indices: 26762408--26762438 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26762398 TTACTATAAT
26762408 AAACTAATAAATAAAC
1 AAACTAATAAATAAAC
*
26762424 AAACTACTAAATAAA
1 AAACTAATAAATAAA
26762439 TAAATTTTAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.13, G:0.00, T:0.19
Consensus pattern (16 bp):
AAACTAATAAATAAAC
Found at i:26765286 original size:25 final size:24
Alignment explanation
Indices: 26765254--26765324 Score: 70
Period size: 25 Copynumber: 2.8 Consensus size: 24
26765244 TTATTTATTT
*
26765254 TTCCTACTTGGATTGGGATTTTCTA
1 TTCCTACTTGGATT-GGATTTCCTA
* * *
26765279 TTCTTACTAGGATTTGATATTCCTA
1 TTCCTACTTGGATTGGAT-TTCCTA
*
26765304 TTCCTACTTGGAGTAGGATTT
1 TTCCTACTTGGA-TTGGATTT
26765325 GCATAGATTA
Statistics
Matches: 36, Mismatches: 8, Indels: 4
0.75 0.17 0.08
Matches are distributed among these distances:
24 3 0.08
25 29 0.81
26 4 0.11
ACGTcount: A:0.20, C:0.15, G:0.18, T:0.46
Consensus pattern (24 bp):
TTCCTACTTGGATTGGATTTCCTA
Found at i:26766078 original size:50 final size:50
Alignment explanation
Indices: 26766024--26766133 Score: 193
Period size: 50 Copynumber: 2.2 Consensus size: 50
26766014 TGTTCTTTCT
26766024 ATTTGGTTTACTTAATCTTCCTTCTATCCATTATAATCTTGATTCAATTG
1 ATTTGGTTTACTTAATCTTCCTTCTATCCATTATAATCTTGATTCAATTG
* *
26766074 ATTTGGTTTACTTAATCTTGCTTGTATCCATTATAATCTTGATTCAATTG
1 ATTTGGTTTACTTAATCTTCCTTCTATCCATTATAATCTTGATTCAATTG
*
26766124 ATTCGGTTTA
1 ATTTGGTTTA
26766134 GCTACTGGTT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 57 1.00
ACGTcount: A:0.24, C:0.15, G:0.11, T:0.50
Consensus pattern (50 bp):
ATTTGGTTTACTTAATCTTCCTTCTATCCATTATAATCTTGATTCAATTG
Found at i:26766966 original size:22 final size:20
Alignment explanation
Indices: 26766927--26766974 Score: 55
Period size: 22 Copynumber: 2.4 Consensus size: 20
26766917 TCTAAACTTA
26766927 TTTTT-TGAATTTTACTTT-
1 TTTTTATGAATTTTACTTTC
26766945 TTATTTATGAATATTTATCTTTC
1 TT-TTTATGAAT-TTTA-CTTTC
26766968 TTTTTAT
1 TTTTTAT
26766975 TATTATTATC
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 2 0.08
19 3 0.12
20 5 0.20
21 4 0.16
22 9 0.36
23 2 0.08
ACGTcount: A:0.21, C:0.06, G:0.04, T:0.69
Consensus pattern (20 bp):
TTTTTATGAATTTTACTTTC
Found at i:26769259 original size:178 final size:177
Alignment explanation
Indices: 26768918--26769494 Score: 533
Period size: 178 Copynumber: 3.2 Consensus size: 177
26768908 TTTCGTCTCG
* * * * * * *
26768918 ATCATTTATTTTTAACCTCGACTCGATCTCGGTCACCTTATTTTGACTCATGATTTCATCCCAGT
1 ATCATTTGTTTTTGACCTCGACTCGATCTTGATCACCTTA-TTTGACTCGTGGTTTCATTCCAGT
* * * * * **
26768983 CACATGATTCATAATTTTA-TCTCGATCATTTATTTTTTACCTCAACTCAGTCTTAATCA-CTTT
65 CACATGATTCGTAGTTTCATTCT-GATCATTTATTTTTGACCTCGACTCAGTCTTGGTCATC-TT
* * ** * *
26769046 ATTCTAACTCGTTG-TTTTATCTCAGTTGC--ATGATTCGTGATTTCATTCCA
128 ATTTTGACTCG-TGATTTCGTCTC-GAT-CATATGATTCGTGGTTTCATTCCA
* * * * * *
26769096 ATAATTTATTTTTGACCTCGACTTGATCTTGATCACTTTATTCTGACTCGTGGTTTCGTTCTAGT
1 ATCATTTGTTTTTGACCTCGACTCGATCTTGATCACCTTATT-TGACTCGTGGTTTCATTCCAGT
* * * * * * *
26769161 CGCATGATTTGTAGTTTCA-TCTCGATCATTTATTTTTTACCTTGAGTTGATTC-TGGTCA-CTT
65 CACATGATTCGTAGTTTCATTCT-GATCATTTATTTTTGACCTCGA-CTCAGTCTTGGTCATC-T
* * *
26769223 TATTTTGACTCGTGATTTCGTCTCGATCATATGATTCATGGTTTTA-TCTA
127 TATTTTGACTCGTGATTTCGTCTCGATCATATGATTCGTGGTTTCATTCCA
* * * * *
26769273 GATCATTTGTTTTTTACCTCGACTCGATCTTGGTCACCTTACTTTGACTTGTGGTTTTATTCCGG
1 -ATCATTTGTTTTTGACCTCGACTCGATCTTGATCACCTTA-TTTGACTCGTGGTTTCATTCCAG
* *
26769338 TCACATGATTCGTGGTTTCGTTCTGATCATTTATTTTTGACCTCGACTCAGTCTTGGTCATCTTA
64 TCACATGATTCGTAGTTTCATTCTGATCATTTATTTTTGACCTCGACTCAGTCTTGGTCATCTTA
* * * *
26769403 TTTTTACTCGTGATTTTGTCTCGATCATATTATTCGTGGTTTCATCCCA
129 TTTTGACTCGTGATTTCGTCTCGATCATATGATTCGTGGTTTCATTCCA
* * *
26769452 ATCATTTGTTTTTGACATCAACTCGGTCTTGATCACCTTATTT
1 ATCATTTGTTTTTGACCTCGACTCGATCTTGATCACCTTATTT
26769495 TAACTTATGG
Statistics
Matches: 324, Mismatches: 64, Indels: 23
0.79 0.16 0.06
Matches are distributed among these distances:
176 1 0.00
177 16 0.05
178 295 0.91
179 12 0.04
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (177 bp):
ATCATTTGTTTTTGACCTCGACTCGATCTTGATCACCTTATTTGACTCGTGGTTTCATTCCAGTC
ACATGATTCGTAGTTTCATTCTGATCATTTATTTTTGACCTCGACTCAGTCTTGGTCATCTTATT
TTGACTCGTGATTTCGTCTCGATCATATGATTCGTGGTTTCATTCCA
Found at i:26769386 original size:89 final size:89
Alignment explanation
Indices: 26768900--26769495 Score: 411
Period size: 89 Copynumber: 6.7 Consensus size: 89
26768890 ATTCTTTAAT
* * * *
26768900 ATTCATGGTTTCGTCTCGATCATTTATTTTTAACCTCGACTCGATCTCGGTCACCTTATTTTGAC
1 ATTCGTGGTTTCTTCTCGATCATTTATTTTTGACCTCGACTCGATCTTGGTCACCTTATTTTGAC
* * * * *
26768965 TCATGATTTCATCCCAGTCACATG
66 TCGTGGTTTTATTCCGGTCACATG
* ** * * ** * * *
26768989 ATTCATAATTT-TATCTCGATCATTTATTTTTTACCTCAACTC-AGTCTTAATCACTTTATTCTA
1 ATTCGTGGTTTCT-TCTCGATCATTTATTTTTGACCTCGACTCGA-TCTTGGTCACCTTATTTTG
* * **
26769052 ACTCGTTGTTTTA-TCTCAGTTGCATG
64 ACTCGTGGTTTTATTC-CGGTCACATG
* * * * * * *
26769078 ATTCGTGATTTCATTC-CAATAATTTATTTTTGACCTCGACTTGATCTTGATCACTTTATTCTGA
1 ATTCGTGGTTTC-TTCTCGATCATTTATTTTTGACCTCGACTCGATCTTGGTCACCTTATTTTGA
** ** *
26769142 CTCGTGGTTTCGTTCTAGTCGCATG
65 CTCGTGGTTTTATTCCGGTCACATG
* * * * * * * *
26769167 ATTTGTAGTTTCATCTCGATCATTTATTTTTTACCTTGAGTTGAT-TCTGGTCACTTTATTTTGA
1 ATTCGTGGTTTCTTCTCGATCATTTATTTTTGACCTCGACTCGATCT-TGGTCACCTTATTTTGA
* ** * *
26769231 CTCGT-GATTTCGTCTCGATCATATG
65 CTCGTGGTTTTATTC-CGGTCACATG
* * * * *
26769256 ATTCATGGTTT-TATCTAGATCATTTGTTTTTTACCTCGACTCGATCTTGGTCACCTTACTTTGA
1 ATTCGTGGTTTCT-TCTCGATCATTTATTTTTGACCTCGACTCGATCTTGGTCACCTTATTTTGA
*
26769320 CTTGTGGTTTTATTCCGGTCACATG
65 CTCGTGGTTTTATTCCGGTCACATG
* *
26769345 ATTCGTGGTTTCGTTCT-GATCATTTATTTTTGACCTCGACTC-AGTCTTGGTCATCTTATTTTT
1 ATTCGTGGTTTC-TTCTCGATCATTTATTTTTGACCTCGACTCGA-TCTTGGTCACCTTATTTTG
* * * * *
26769408 ACTCGTGATTTT-GTCTCGATCATATT
64 ACTCGTGGTTTTATTC-CGGTCACATG
* * * * * * * *
26769434 ATTCGTGGTTTCATCCCAATCATTTGTTTTTGACATCAACTCGGTCTTGATCACCTTATTTT
1 ATTCGTGGTTTCTTCTCGATCATTTATTTTTGACCTCGACTCGATCTTGGTCACCTTATTTT
26769496 AACTTATGGT
Statistics
Matches: 398, Mismatches: 90, Indels: 38
0.76 0.17 0.07
Matches are distributed among these distances:
88 15 0.04
89 366 0.92
90 15 0.04
91 2 0.01
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (89 bp):
ATTCGTGGTTTCTTCTCGATCATTTATTTTTGACCTCGACTCGATCTTGGTCACCTTATTTTGAC
TCGTGGTTTTATTCCGGTCACATG
Found at i:26769414 original size:267 final size:267
Alignment explanation
Indices: 26768907--26769393 Score: 608
Period size: 267 Copynumber: 1.8 Consensus size: 267
26768897 AATATTCATG
*
26768907 GTTTCGTCTCGATCATTTATTTTTAACCTCGACTCGATCTCGGTCACCTTATTTTGACTCATGAT
1 GTTTCATCTCGATCATTTATTTTTAACCTCGACTCGATCTCGGTCACCTTATTTTGACTCATGAT
*
26768972 TTCATCCCAGTCACATGATTCATAATTTTATCTCGATCATTTATTTTTTACCTCAACTCAGTCTT
66 TTCATCCCAGTCACATGATTCATAATTTTATCTAGATCATTTATTTTTTACCTCAACTCAGTCTT
* * **
26769037 AATCACTTTATTCTAACTCGTTGTTTTATCTCAGTTGCATGATTCGTGATTTCATTCCAATAATT
131 AATCACCTTATTCTAACTCGTGGTTTTATCTCAGTCACATGATTCGTGATTTCATTCCAATAATT
*
26769102 TATTTTTGACCTCGACTTGATCTTGATCACTTTATTCTGACTCGTGGTTTCGTTCTAGTCGCATG
196 TATTTTTGACCTCGACTAGATCTTGATCACTTTATTCTGACTCGTGGTTTCGTTCTAGTCGCATG
26769167 ATTTGTA
261 ATTTGTA
* * * * * *
26769174 GTTTCATCTCGATCATTTATTTTTTACCTTGAGTTGAT-TCTGGTCACTTTATTTTGACTCGTGA
1 GTTTCATCTCGATCATTTATTTTTAACCTCGACTCGATCTC-GGTCACCTTATTTTGACTCATGA
* * * ** * *
26769238 TTTCGTCTC-GATCATATGATTCATGGTTTTATCTAGATCATTTGTTTTTTACCTCGACTC-GAT
65 TTTCATCCCAG-TCACATGATTCATAATTTTATCTAGATCATTTATTTTTTACCTCAACTCAG-T
** * * * * * **
26769301 CTTGGTCACCTTACTT-TGACTTGTGGTTTTAT-TCCGGTCACATGATTCGTGGTTTCGTTCTGA
128 CTTAATCACCTTA-TTCTAACTCGTGGTTTTATCT-CAGTCACATGATTCGTGATTTCATTCCAA
*
26769364 TCATTTATTTTTGACCTCGACTCAG-TCTTG
191 TAATTTATTTTTGACCTCGACT-AGATCTTG
26769394 GTCATCTTAT
Statistics
Matches: 184, Mismatches: 30, Indels: 12
0.81 0.13 0.05
Matches are distributed among these distances:
266 5 0.03
267 176 0.96
268 3 0.02
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (267 bp):
GTTTCATCTCGATCATTTATTTTTAACCTCGACTCGATCTCGGTCACCTTATTTTGACTCATGAT
TTCATCCCAGTCACATGATTCATAATTTTATCTAGATCATTTATTTTTTACCTCAACTCAGTCTT
AATCACCTTATTCTAACTCGTGGTTTTATCTCAGTCACATGATTCGTGATTTCATTCCAATAATT
TATTTTTGACCTCGACTAGATCTTGATCACTTTATTCTGACTCGTGGTTTCGTTCTAGTCGCATG
ATTTGTA
Found at i:26769447 original size:267 final size:267
Alignment explanation
Indices: 26768899--26769495 Score: 607
Period size: 267 Copynumber: 2.2 Consensus size: 267
26768889 CATTCTTTAA
* *
26768899 TATTCATGGTTTCGTCTCGATCATTTATTTTTAACCTCGACTCGATCTCGGTCACCTTATTTTGA
1 TATTCGTGGTTTCATCTCGATCATTTATTTTTAACCTCGACTCGATCTCGGTCACCTTATTTTGA
*
26768964 CTCATGATTTCATCCCAGTCACATGATTCATAATTTTATCTCGATCATTTATTTTTTACCTCAAC
66 CTCATGATTTCATCCCAGTCACATGATTCATAATTTTATCTAGATCATTTATTTTTTACCTCAAC
* * **
26769029 TCAGTCTTAATCACTTTATTCTAACTCGTTGTTTTATCTCAGTTGCATGATTCGTGATTTCATTC
131 TCAGTCTTAATCACCTTATTCTAACTCGTGGTTTTATCTCAGTCACATGATTCGTGATTTCATTC
* * *
26769094 CAATAATTTATTTTTGACCTCGACTTGATCTTGATCACTTTATTCTGACTCGTGGTTTCGTTCTA
196 CAATAATTTATTTTTGACCTCGACTAGATCTTGATCACTTTATTCTGACTCGTGATTTCGTTCGA
*
26769159 GTCGCAT
261 GTCACAT
* * * * * * * *
26769166 GATTTGTAGTTTCATCTCGATCATTTATTTTTTACCTTGAGTTGAT-TCTGGTCACTTTATTTTG
1 TATTCGTGGTTTCATCTCGATCATTTATTTTTAACCTCGACTCGATCTC-GGTCACCTTATTTTG
* * * * ** * *
26769230 ACTCGTGATTTCGTCTC-GATCATATGATTCATGGTTTTATCTAGATCATTTGTTTTTTACCTCG
65 ACTCATGATTTCATCCCAG-TCACATGATTCATAATTTTATCTAGATCATTTATTTTTTACCTCA
** * * * *
26769294 ACTC-GATCTTGGTCACCTTACTT-TGACTTGTGGTTTTAT-TCCGGTCACATGATTCGTGGTTT
129 ACTCAG-TCTTAATCACCTTA-TTCTAACTCGTGGTTTTATCT-CAGTCACATGATTCGTGATTT
* ** * * * *
26769356 CGTTCTGATCATTTATTTTTGACCTCGACTCAG-TCTTGGTCA-TCTTATTTTTACTCGTGATTT
191 CATTCCAATAATTTATTTTTGACCTCGACT-AGATCTTGATCACT-TTATTCTGACTCGTGATTT
* *
26769419 TGTCTCGA-TCATAT
254 CGT-TCGAGTCACAT
* * * * * * * * *
26769433 TATTCGTGGTTTCATCCCAATCATTTGTTTTTGACATCAACTCGGTCTTGATCACCTTATTTT
1 TATTCGTGGTTTCATCTCGATCATTTATTTTTAACCTCGACTCGATCTCGGTCACCTTATTTT
26769496 AACTTATGGT
Statistics
Matches: 263, Mismatches: 58, Indels: 18
0.78 0.17 0.05
Matches are distributed among these distances:
266 6 0.02
267 250 0.95
268 7 0.03
ACGTcount: A:0.19, C:0.21, G:0.14, T:0.46
Consensus pattern (267 bp):
TATTCGTGGTTTCATCTCGATCATTTATTTTTAACCTCGACTCGATCTCGGTCACCTTATTTTGA
CTCATGATTTCATCCCAGTCACATGATTCATAATTTTATCTAGATCATTTATTTTTTACCTCAAC
TCAGTCTTAATCACCTTATTCTAACTCGTGGTTTTATCTCAGTCACATGATTCGTGATTTCATTC
CAATAATTTATTTTTGACCTCGACTAGATCTTGATCACTTTATTCTGACTCGTGATTTCGTTCGA
GTCACAT
Found at i:26769927 original size:9 final size:10
Alignment explanation
Indices: 26769909--26769973 Score: 77
Period size: 9 Copynumber: 6.8 Consensus size: 10
26769899 TTTAATTAAG
26769909 TATT-TTTAT
1 TATTATTTAT
26769918 T-TTATTTATT
1 TATTATTTA-T
26769928 TATTTATTTAT
1 TA-TTATTTAT
26769939 TATTA-TTAT
1 TATTATTTAT
26769948 TATTA-TTAT
1 TATTATTTAT
26769957 TATTA-TTAT
1 TATTATTTAT
26769966 TATTATTT
1 TATTATTT
26769974 TCTTTTCCTT
Statistics
Matches: 51, Mismatches: 0, Indels: 9
0.85 0.00 0.15
Matches are distributed among these distances:
8 2 0.04
9 32 0.63
10 7 0.14
11 3 0.06
12 7 0.14
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (10 bp):
TATTATTTAT
Found at i:26769935 original size:12 final size:13
Alignment explanation
Indices: 26769913--26769973 Score: 53
Period size: 12 Copynumber: 4.9 Consensus size: 13
26769903 ATTAAGTATT
26769913 TTTATTTTATTTA
1 TTTATTTTATTTA
26769926 TTTA-TTTATTTA
1 TTTATTTTATTTA
26769938 -TTATTATTA-TTA
1 TTTATT-TTATTTA
26769950 -TTATTATTA-TTA
1 TTTATT-TTATTTA
26769962 -TTATTATTATTT
1 TTTATT-TTATTT
26769974 TCTTTTCCTT
Statistics
Matches: 45, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
11 3 0.07
12 33 0.73
13 9 0.20
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (13 bp):
TTTATTTTATTTA
Found at i:26769943 original size:3 final size:3
Alignment explanation
Indices: 26769935--26769972 Score: 76
Period size: 3 Copynumber: 12.7 Consensus size: 3
26769925 ATTTATTTAT
26769935 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26769973 TTCTTTTCCT
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 35 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26770449 original size:11 final size:11
Alignment explanation
Indices: 26770432--26770489 Score: 75
Period size: 10 Copynumber: 5.4 Consensus size: 11
26770422 TAAAACGATC
26770432 TAGGAATTTTT
1 TAGGAATTTTT
*
26770443 CAGGAATTTTT
1 TAGGAATTTTT
26770454 TA-GAATTTTT
1 TAGGAATTTTT
26770464 TA-GAATTTTT
1 TAGGAATTTTT
*
26770474 TTGGAATTTTT
1 TAGGAATTTTT
26770485 CTAGG
1 -TAGG
26770490 TTTTTTGGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 3
0.85 0.08 0.06
Matches are distributed among these distances:
10 19 0.46
11 19 0.46
12 3 0.07
ACGTcount: A:0.26, C:0.03, G:0.17, T:0.53
Consensus pattern (11 bp):
TAGGAATTTTT
Found at i:26770461 original size:21 final size:21
Alignment explanation
Indices: 26770435--26770485 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 21
26770425 AACGATCTAG
26770435 GAATTTTTCAGGAA-TTTTTTA
1 GAATTTTTCA-GAATTTTTTTA
* *
26770456 GAATTTTTTAGAATTTTTTTG
1 GAATTTTTCAGAATTTTTTTA
26770477 GAATTTTTC
1 GAATTTTTC
26770486 TAGGTTTTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 3 0.12
21 23 0.88
ACGTcount: A:0.25, C:0.04, G:0.14, T:0.57
Consensus pattern (21 bp):
GAATTTTTCAGAATTTTTTTA
Found at i:26770493 original size:21 final size:21
Alignment explanation
Indices: 26770434--26770495 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
26770424 AAACGATCTA
*
26770434 GGAATTTTTC-AGGAATTTTTT
1 GGAATTTTTCTAGG-TTTTTTT
* *
26770455 AGAATTTTT-TAGAATTTTTTT
1 GGAATTTTTCTAG-GTTTTTTT
26770476 GGAATTTTTCTAGGTTTTTT
1 GGAATTTTTCTAGGTTTTTT
26770496 GGGTTTTTGA
Statistics
Matches: 33, Mismatches: 5, Indels: 6
0.75 0.11 0.14
Matches are distributed among these distances:
21 30 0.91
22 3 0.09
ACGTcount: A:0.23, C:0.03, G:0.16, T:0.58
Consensus pattern (21 bp):
GGAATTTTTCTAGGTTTTTTT
Found at i:26770936 original size:19 final size:19
Alignment explanation
Indices: 26770891--26770938 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
26770881 TCCTTTTTCC
*
26770891 ATTTTTTTTATTTTTTGAT
1 ATTTATTTTATTTTTTGAT
26770910 -TTTGATTTTATTTATTT-AT
1 ATTT-ATTTTATTT-TTTGAT
26770929 ATTTATTTTA
1 ATTTATTTTA
26770939 CCTATATTTT
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
18 3 0.12
19 16 0.64
20 6 0.24
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (19 bp):
ATTTATTTTATTTTTTGAT
Found at i:26772271 original size:22 final size:22
Alignment explanation
Indices: 26772243--26772292 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
26772233 TTAATAACAT
26772243 GTAATACCTATTTATTAAATTG
1 GTAATACCTATTTATTAAATTG
*
26772265 GTAATACCTCTTTATTAAATTG
1 GTAATACCTATTTATTAAATTG
*
26772287 GCAATA
1 GTAATA
26772293 TCAGTTCAGG
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.36, C:0.12, G:0.10, T:0.42
Consensus pattern (22 bp):
GTAATACCTATTTATTAAATTG
Found at i:26773848 original size:130 final size:130
Alignment explanation
Indices: 26773615--26773879 Score: 476
Period size: 130 Copynumber: 2.0 Consensus size: 130
26773605 GGAGTATAAT
* *
26773615 ACAAGCATGTGAATACTTACAAGATCATACAAGACAATTACATAACTCTTTCTTAAAGTTCGATG
1 ACAAGCATGTGAATACTTACAAGATCATACAAGACAATTACATAACCCTTTCTTAAAGTCCGATG
26773680 GTGATACATTTGTTTGGCCTGAATATTCTTTTGTTGTTTTTTAATTTTTTGAAAAAAAAAAAGAA
66 GTGATACATTTGTTTGGCCTGAATATTCTTTTGTTGTTTTTTAATTTTTTGAAAAAAAAAAAGAA
* * *
26773745 ACAAGCATGTGAATATTTACAAGATCATACAAGACAATTGCATAACCCTTTCTTGAAGTCCGATG
1 ACAAGCATGTGAATACTTACAAGATCATACAAGACAATTACATAACCCTTTCTTAAAGTCCGATG
*
26773810 GTGATATATTTGTTTGGCCTGAATATTCTTTTGTTGTTTTTTAATTTTTTGAAAAAAAAAAAGAA
66 GTGATACATTTGTTTGGCCTGAATATTCTTTTGTTGTTTTTTAATTTTTTGAAAAAAAAAAAGAA
26773875 ACAAG
1 ACAAG
26773880 GTAAATTCGA
Statistics
Matches: 129, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
130 129 1.00
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (130 bp):
ACAAGCATGTGAATACTTACAAGATCATACAAGACAATTACATAACCCTTTCTTAAAGTCCGATG
GTGATACATTTGTTTGGCCTGAATATTCTTTTGTTGTTTTTTAATTTTTTGAAAAAAAAAAAGAA
Found at i:26775508 original size:132 final size:134
Alignment explanation
Indices: 26775358--26775670 Score: 391
Period size: 132 Copynumber: 2.4 Consensus size: 134
26775348 ACAGAAACAG
* * * *
26775358 CTTAAATAATCACTTATAAAAAAAAATAAAATGTCCCATTTAAGGTGTCTGCATACATAAATGCC
1 CTTAAATAATCAGTTATAAAAAAAAATAAAATGTCTCAATTAAGGTGTCTGCATACAAAAATGCC
* * * *
26775423 TTAAATGATTTATTAATTAAGCTGT-AAAA-AAA-AAAAGGATCATTTAAGGCATGTTGTATAGA
66 TTAAATGATTGATCAACTAAGATGTAAAAATAAATAAAAGGATCATTTAAGGCATGTTGTAT-GA
26775485 AATGC
130 AATGC
* * * * **
26775490 CTTAAATGATCAGTTATAAAAAAAAAAAAAATGTCTCAATTAAGGTATTTTTATACAAAAATGCC
1 CTTAAATAATCAGTTATAAAAAAAAATAAAATGTCTCAATTAAGGTGTCTGCATACAAAAATGCC
** ** *
26775555 TTAAATGATTGATCAACTAAGATGTAAAAATAAATAAAATTATCATTTAAGGGTTTTTGTATGAA
66 TTAAATGATTGATCAACTAAGATGTAAAAATAAATAAAAGGATCATTTAAGGCATGTTGTATGAA
*
26775620 ATGT
131 ATGC
* *
26775624 CTTAAATAATCAGTTAT-AAAAATAATAAAATATCTCAATTAAGGTGT
1 CTTAAATAATCAGTTATAAAAAAAAATAAAATGTCTCAATTAAGGTGT
26775671 TAATGTTTTG
Statistics
Matches: 153, Mismatches: 25, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
132 76 0.50
133 30 0.20
134 25 0.16
135 22 0.14
ACGTcount: A:0.46, C:0.09, G:0.12, T:0.33
Consensus pattern (134 bp):
CTTAAATAATCAGTTATAAAAAAAAATAAAATGTCTCAATTAAGGTGTCTGCATACAAAAATGCC
TTAAATGATTGATCAACTAAGATGTAAAAATAAATAAAAGGATCATTTAAGGCATGTTGTATGAA
ATGC
Found at i:26780172 original size:6 final size:6
Alignment explanation
Indices: 26780161--26780212 Score: 52
Period size: 6 Copynumber: 8.8 Consensus size: 6
26780151 TCTTAGTTTT
* * * * *
26780161 AATTTG AATTTG AATTTA AATTTG -ATTTT AATTTT AATTTC AATTTC
1 AATTTG AATTTG AATTTG AATTTG AATTTG AATTTG AATTTG AATTTG
26780208 AATTT
1 AATTT
26780213 TACTTTAGGT
Statistics
Matches: 41, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
5 4 0.10
6 37 0.90
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (6 bp):
AATTTG
Found at i:26780179 original size:29 final size:29
Alignment explanation
Indices: 26780157--26780212 Score: 85
Period size: 29 Copynumber: 1.9 Consensus size: 29
26780147 TTAATCTTAG
*
26780157 TTTTAATTTGAATTTGAATTTAAATTTGA
1 TTTTAATTTGAATTTCAATTTAAATTTGA
* *
26780186 TTTTAATTTTAATTTCAATTTCAATTT
1 TTTTAATTTGAATTTCAATTTAAATTT
26780213 TACTTTAGGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.32, C:0.04, G:0.05, T:0.59
Consensus pattern (29 bp):
TTTTAATTTGAATTTCAATTTAAATTTGA
Found at i:26780193 original size:23 final size:23
Alignment explanation
Indices: 26780162--26780206 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
26780152 CTTAGTTTTA
26780162 ATTTGAATTTGAATTTAAATTTG
1 ATTTGAATTTGAATTTAAATTTG
* * *
26780185 ATTTTAATTTTAATTTCAATTT
1 ATTTGAATTTGAATTTAAATTT
26780207 CAATTTTACT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.33, C:0.02, G:0.07, T:0.58
Consensus pattern (23 bp):
ATTTGAATTTGAATTTAAATTTG
Found at i:26780213 original size:18 final size:17
Alignment explanation
Indices: 26780157--26780219 Score: 63
Period size: 18 Copynumber: 3.6 Consensus size: 17
26780147 TTAATCTTAG
*
26780157 TTTTAATTTGAATTTGAA
1 TTTTAATTT-AATTTCAA
* * *
26780175 TTTAAATTTGATTTTAA
1 TTTTAATTTAATTTCAA
26780192 TTTTAATTTCAATTTCAA
1 TTTTAATTT-AATTTCAA
*
26780210 TTTTACTTTA
1 TTTTAATTTA
26780220 GGTTTTGTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
17 15 0.41
18 22 0.59
ACGTcount: A:0.32, C:0.05, G:0.05, T:0.59
Consensus pattern (17 bp):
TTTTAATTTAATTTCAA
Found at i:26781908 original size:23 final size:23
Alignment explanation
Indices: 26781882--26781946 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 23
26781872 TATTTACATG
26781882 ATTATTTATATTATTGCATGATA
1 ATTATTTATATTATTGCATGATA
*
26781905 ATTA-ATATATT-TATG--TGAT-
1 ATTATTTATATTAT-TGCATGATA
*
26781924 A-T-TTTATATTATTACATGATA
1 ATTATTTATATTATTGCATGATA
26781945 AT
1 AT
26781947 ATATATGTAT
Statistics
Matches: 32, Mismatches: 3, Indels: 15
0.64 0.06 0.30
Matches are distributed among these distances:
18 8 0.25
19 2 0.06
20 8 0.25
21 2 0.06
22 8 0.25
23 4 0.12
ACGTcount: A:0.37, C:0.03, G:0.08, T:0.52
Consensus pattern (23 bp):
ATTATTTATATTATTGCATGATA
Found at i:26781916 original size:40 final size:37
Alignment explanation
Indices: 26781805--26781946 Score: 119
Period size: 40 Copynumber: 3.7 Consensus size: 37
26781795 TTTTATTTGG
* *
26781805 ATGATTATATATTTAATTGCATGATATATTATTATTTGC
1 ATGATTATTTATTT-ATTGCATGATA-ATTATTATTTAC
* * * *
26781844 ATGATTAATTATCTATT-TAT-ATAATTGTTATTTAC
1 ATGATTATTTATTTATTGCATGATAATTATTATTTAC
*
26781879 ATGATTATTTATATTATTGCATGATAATTAATATATTTAT
1 ATGATTATTTAT-TTATTGCATGATAATT-AT-TATTTAC
* *
26781919 GTGA-TATTTTATATTATTACATGATAAT
1 ATGATTA-TTTAT-TTATTGCATGATAAT
26781947 ATATATGTAT
Statistics
Matches: 84, Mismatches: 13, Indels: 11
0.78 0.12 0.10
Matches are distributed among these distances:
35 21 0.25
36 7 0.08
37 4 0.05
38 9 0.11
39 14 0.17
40 29 0.35
ACGTcount: A:0.35, C:0.04, G:0.08, T:0.52
Consensus pattern (37 bp):
ATGATTATTTATTTATTGCATGATAATTATTATTTAC
Found at i:26781951 original size:20 final size:20
Alignment explanation
Indices: 26781875--26781952 Score: 77
Period size: 20 Copynumber: 3.9 Consensus size: 20
26781865 TAATTGTTAT
*
26781875 TTACATGATTATTTATATTA
1 TTACATGATAATTTATATTA
* *
26781895 TTGCATGATAATTAATA-TA
1 TTACATGATAATTTATATTA
** *
26781914 TTTATGTGATATTTTATATTA
1 -TTACATGATAATTTATATTA
*
26781935 TTACATGATAATATATAT
1 TTACATGATAATTTATAT
26781953 GTATAATATT
Statistics
Matches: 44, Mismatches: 12, Indels: 4
0.73 0.20 0.07
Matches are distributed among these distances:
19 2 0.05
20 40 0.91
21 2 0.05
ACGTcount: A:0.37, C:0.04, G:0.08, T:0.51
Consensus pattern (20 bp):
TTACATGATAATTTATATTA
Found at i:26781991 original size:14 final size:14
Alignment explanation
Indices: 26781968--26781998 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
26781958 ATATTCTTGC
*
26781968 ATGATCATTTTTGT
1 ATGATAATTTTTGT
26781982 ATGATAATTTTTGT
1 ATGATAATTTTTGT
26781996 ATG
1 ATG
26781999 GTATGATTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.26, C:0.03, G:0.16, T:0.55
Consensus pattern (14 bp):
ATGATAATTTTTGT
Found at i:26782044 original size:9 final size:10
Alignment explanation
Indices: 26782014--26782054 Score: 57
Period size: 10 Copynumber: 4.1 Consensus size: 10
26782004 ATTTAGTATT
*
26782014 TATTGCATGA
1 TATTGTATGA
26782024 TATTGATATGA
1 TATTG-TATGA
26782035 TATT-TATGA
1 TATTGTATGA
26782044 TATTGTATGA
1 TATTGTATGA
26782054 T
1 T
26782055 TACATGATAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 9 0.32
10 11 0.39
11 8 0.29
ACGTcount: A:0.32, C:0.02, G:0.17, T:0.49
Consensus pattern (10 bp):
TATTGTATGA
Found at i:26782397 original size:49 final size:49
Alignment explanation
Indices: 26782325--26782422 Score: 178
Period size: 49 Copynumber: 2.0 Consensus size: 49
26782315 TTAAAAAAGA
26782325 TAGATTCACACAAGTGGCCAATCACACCTAGATAAAAAGATTAATGATG
1 TAGATTCACACAAGTGGCCAATCACACCTAGATAAAAAGATTAATGATG
* *
26782374 TAGATTGACACAAGTGGCCAATCACACCTAGATAAAAAGATTAGTGATG
1 TAGATTCACACAAGTGGCCAATCACACCTAGATAAAAAGATTAATGATG
26782423 ACTCCATGGT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.42, C:0.17, G:0.18, T:0.22
Consensus pattern (49 bp):
TAGATTCACACAAGTGGCCAATCACACCTAGATAAAAAGATTAATGATG
Found at i:26788367 original size:84 final size:84
Alignment explanation
Indices: 26788287--26788485 Score: 208
Period size: 84 Copynumber: 2.4 Consensus size: 84
26788277 GGACTTAAAA
* ** *
26788287 ATTACGTTCGAAGGTCTTACAAATCTTGACACTAAAATTGATTCAACTTAGAAGACTTACGTATC
1 ATTACGTTCGAAGGTCTTACAAATCTTGACACTAAAATAGATTCAACACAGAAGACTTACGAATC
26788352 TTGCCTGT-AGAACTTAGAG
66 TTG-CTGTGAGAACTTAGAG
* * * * * *
26788371 ATTACACTTGGAA-GTCTTACAAAT-TTCAACATTAAAATAGATTTAGCACAGAAGACTTACGAA
1 ATTAC-GTTCGAAGGTCTTACAAATCTT-GACACTAAAATAGATTCAACACAGAAGACTTACGAA
*
26788434 TCTTGCTTTGAGAACTTAGAG
64 TCTTGCTGTGAGAACTTAGAG
* * *
26788455 ATTATG-CCTAAAGGTCTTACAAATCTTGACA
1 ATTACGTTC-GAAGGTCTTACAAATCTTGACA
26788486 TCTATGAAAG
Statistics
Matches: 92, Mismatches: 17, Indels: 12
0.76 0.14 0.10
Matches are distributed among these distances:
83 7 0.08
84 78 0.85
85 7 0.08
ACGTcount: A:0.36, C:0.17, G:0.16, T:0.32
Consensus pattern (84 bp):
ATTACGTTCGAAGGTCTTACAAATCTTGACACTAAAATAGATTCAACACAGAAGACTTACGAATC
TTGCTGTGAGAACTTAGAG
Found at i:26788815 original size:209 final size:209
Alignment explanation
Indices: 26788449--26788828 Score: 507
Period size: 209 Copynumber: 1.8 Consensus size: 209
26788439 CTTTGAGAAC
* * *
26788449 TTAGAGATTATGCCTAAAGGTCTTACAAATCTTGACATCTATGAAAGCTCTTTTAACCAAAGGCA
1 TTAGAGATTATGCCTAAAGATCTTAAAAATCTTGACATCAATGAAAGCTCTTTTAACCAAAGGCA
* * * * * ** *
26788514 TTGAAACTTTAAAGATTTAAAATATTTTACCTAGAAGATTTAGAGATTACGCTTGAAGGTCTTAT
66 TTAAAACTTTAAAAATTTAAAATACTTTACCTAGAAGACTTAAAGATTACGCCCGAAGGTCTTAC
* * *
26788579 AAATCTCAACATCTATGAAATCTCCTCTAATCGGAGGCATTGAAACTTTAAAGATTTAAAATGTT
131 AAATCTCAACATCTATAAAAGCTCCTCTAATCAGAGGCATTGAAACTTTAAAGATTTAAAATGTT
26788644 TTGTCTCGGAGGGT
196 TTGTCTCGGAGGGT
* * *
26788658 TTAGAGATTATG-CTCAAAGATCTTAAAAATCTTGACATCAATGAAATCT-TCTTTAATCAGAGG
1 TTAGAGATTATGCCT-AAAGATCTTAAAAATCTTGACATCAATGAAAGCTCT-TTTAACCAAAGG
* * *
26788721 CATTAAAACTTTAAAAATTTAAAATGCTTTATCC-GGAGGACTTAAAGATTACGCCCGACA-GTC
64 CATTAAAACTTTAAAAATTTAAAATACTTTA-CCTAGAAGACTTAAAGATTACGCCCGA-AGGTC
*
26788784 TTACAAATCTCAACATCTATAAAAGCTCCTCTGATCAGAGGCATT
127 TTACAAATCTCAACATCTATAAAAGCTCCTCTAATCAGAGGCATT
26788829 AAAAGAATTT
Statistics
Matches: 146, Mismatches: 21, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
208 3 0.02
209 140 0.96
210 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (209 bp):
TTAGAGATTATGCCTAAAGATCTTAAAAATCTTGACATCAATGAAAGCTCTTTTAACCAAAGGCA
TTAAAACTTTAAAAATTTAAAATACTTTACCTAGAAGACTTAAAGATTACGCCCGAAGGTCTTAC
AAATCTCAACATCTATAAAAGCTCCTCTAATCAGAGGCATTGAAACTTTAAAGATTTAAAATGTT
TTGTCTCGGAGGGT
Found at i:26788829 original size:104 final size:103
Alignment explanation
Indices: 26788468--26788832 Score: 381
Period size: 104 Copynumber: 3.5 Consensus size: 103
26788458 ATGCCTAAAG
** * * * * *
26788468 GTCTTACAAATCTTGACATCTATGAAAGCTCTTTTAACCAAAGGCATTGAAACTTTAAAGATTTA
1 GTCTTACAAATCTCAACATCTATGAAAGCTCCTCTAATCAGAGGCATTAAAACTTTAAAGATTTA
* * * *
26788533 AAATATTTTA-CCTAGAAGATTTAGAGATTACGCTTGAA
66 AAATGTTTTATCC-GGAGGATTTAGAGATTACGCTCGAA
* * * *
26788571 GGTCTTATAAATCTCAACATCTATGAAATCTCCTCTAATCGGAGGCATTGAAACTTTAAAGATTT
1 -GTCTTACAAATCTCAACATCTATGAAAGCTCCTCTAATCAGAGGCATTAAAACTTTAAAGATTT
* * * *
26788636 AAAATGTTTTGTCTCGGAGGGTTTAGAGATTATGCTCAAA
65 AAAATGTTTTATC-CGGAGGATTTAGAGATTACGCTCGAA
* ** * * * * *
26788676 GATCTTAAAAATCTTGACATCAATGAAATCTTCTTTAATCAGAGGCATTAAAACTTTAAAAATTT
1 G-TCTTACAAATCTCAACATCTATGAAAGCTCCTCTAATCAGAGGCATTAAAACTTTAAAGATTT
* * * *
26788741 AAAATGCTTTATCCGGAGGACTTAAAGATTACGCCCGACA
65 AAAATGTTTTATCCGGAGGATTTAGAGATTACGCTCGA-A
* *
26788781 GTCTTACAAATCTCAACATCTATAAAAGCTCCTCTGATCAGAGGCATTAAAA
1 GTCTTACAAATCTCAACATCTATGAAAGCTCCTCTAATCAGAGGCATTAAAA
26788833 GAATTTGAAT
Statistics
Matches: 214, Mismatches: 43, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
104 126 0.59
105 87 0.41
106 1 0.00
ACGTcount: A:0.37, C:0.17, G:0.15, T:0.32
Consensus pattern (103 bp):
GTCTTACAAATCTCAACATCTATGAAAGCTCCTCTAATCAGAGGCATTAAAACTTTAAAGATTTA
AAATGTTTTATCCGGAGGATTTAGAGATTACGCTCGAA
Found at i:26789154 original size:122 final size:121
Alignment explanation
Indices: 26788961--26789199 Score: 286
Period size: 122 Copynumber: 2.0 Consensus size: 121
26788951 TCTTGTAAAT
* * * * * * * *
26788961 CATTTAAAAATTTAAGATTTTGCCCTAAGGTCTTTGAAAATCATTTAAAATTTTGAAATTTCACT
1 CATTCAAAAATCTAAGATTTTACCCAAAGGTCTTTGAAAATCATTCAAAAATCTAAAATTTCACT
* * * * *
26789026 CGGAGGTCTTTGAAAATC-TTTTGAAATTTTAAAATTTTGCATGAAA-GTCTTGGGAAC
66 CAGAGGTCTTAG-AAATCATTTAGAAA-ATTAAAATTTTGC-TCAAAGGTCTTGGGAAC
* *
26789083 CATTCAAAAATCTAAGATTTTATCCAAAGGTCTTTGAAAATCATTCAAAAATCTAAAAGTTT-GC
1 CATTCAAAAATCTAAGATTTTACCCAAAGGTCTTTGAAAATCATTCAAAAATCTAAAA-TTTCAC
26789147 TCAGAGGTCTTAGAAATCATTTAGAAAATTAAAATTTTGCTCAAAGGTCTTGG
65 TCAGAGGTCTTAGAAATCATTTAGAAAATTAAAATTTTGCTCAAAGGTCTTGG
26789200 AAATAATATA
Statistics
Matches: 99, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
120 4 0.04
121 24 0.24
122 68 0.69
123 3 0.03
ACGTcount: A:0.37, C:0.13, G:0.14, T:0.36
Consensus pattern (121 bp):
CATTCAAAAATCTAAGATTTTACCCAAAGGTCTTTGAAAATCATTCAAAAATCTAAAATTTCACT
CAGAGGTCTTAGAAATCATTTAGAAAATTAAAATTTTGCTCAAAGGTCTTGGGAAC
Found at i:26789155 original size:41 final size:41
Alignment explanation
Indices: 26788915--26789202 Score: 196
Period size: 41 Copynumber: 7.1 Consensus size: 41
26788905 GGAAGTATTG
* * * *
26788915 GAAAATTATTCAAAAATTTAAAGTTTTGC-CTGGAGGTC-TT
1 GAAAATCATTTAAAAATTTAAAATTTTGCTC-AGAGGTCTTT
* * *
26788955 GTAAATCATTTAAAAATTTAAGATTTTGCCCTA-AGGTCTTT
1 GAAAATCATTTAAAAATTTAAAATTTTGCTC-AGAGGTCTTT
* * ** *
26788996 GAAAATCATTTAAAATTTTGAAATTTCACTCGGAGGTCTTT
1 GAAAATCATTTAAAAATTTAAAATTTTGCTCAGAGGTCTTT
* * * * *
26789037 GAAAATCTTTTGAAATTTTAAAATTTTGCATGA-AAGTC-TT
1 GAAAATCATTTAAAAATTTAAAATTTTGC-TCAGAGGTCTTT
** * * * * * *
26789077 GGGAACCATTCAAAAATCTAAGATTTT-ATCCAAAGGTCTTT
1 GAAAATCATTTAAAAATTTAAAATTTTGCT-CAGAGGTCTTT
* * * *
26789118 GAAAATCATTCAAAAATCTAAAAGTTTGCTCAGAGGTCTTA
1 GAAAATCATTTAAAAATTTAAAATTTTGCTCAGAGGTCTTT
* *
26789159 G-AAATCATTTAGAAAA-TTAAAATTTTGCTCAAAGGTCTTG
1 GAAAATCATTTA-AAAATTTAAAATTTTGCTCAGAGGTCTTT
26789199 GAAA
1 GAAA
26789203 TAATATACTC
Statistics
Matches: 191, Mismatches: 47, Indels: 19
0.74 0.18 0.07
Matches are distributed among these distances:
38 1 0.01
39 1 0.01
40 83 0.43
41 104 0.54
42 2 0.01
ACGTcount: A:0.38, C:0.12, G:0.15, T:0.36
Consensus pattern (41 bp):
GAAAATCATTTAAAAATTTAAAATTTTGCTCAGAGGTCTTT
Found at i:26789588 original size:26 final size:26
Alignment explanation
Indices: 26789535--26789589 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
26789525 CTATATGAAT
*
26789535 ATGCAAATGTCTTCTTTCAGATATAA
1 ATGCAAATGTCTTCTTTCAGATACAA
* * *
26789561 ATGCAAATGTCTTTTTTCGGATGCAA
1 ATGCAAATGTCTTCTTTCAGATACAA
26789587 ATG
1 ATG
26789590 TTTCATACGA
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.31, C:0.15, G:0.16, T:0.38
Consensus pattern (26 bp):
ATGCAAATGTCTTCTTTCAGATACAA
Found at i:26790817 original size:20 final size:20
Alignment explanation
Indices: 26790763--26790823 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
26790753 TTATCTTTCT
*
26790763 TTCTACTTTTTTTTTCTCTT-
1 TTCTTCTTTTTTTTT-TCTTA
*
26790783 TT-TT-TTGTTTCTTTTCTTA
1 TTCTTCTT-TTTTTTTTCTTA
*
26790802 TTCTTCTTTTTTTTTTATTA
1 TTCTTCTTTTTTTTTTCTTA
26790822 TT
1 TT
26790824 ACACCATGTA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
18 6 0.18
19 9 0.27
20 16 0.48
21 2 0.06
ACGTcount: A:0.07, C:0.13, G:0.02, T:0.79
Consensus pattern (20 bp):
TTCTTCTTTTTTTTTTCTTA
Found at i:26791228 original size:26 final size:24
Alignment explanation
Indices: 26791199--26791267 Score: 59
Period size: 26 Copynumber: 2.7 Consensus size: 24
26791189 TTCTTTTCTT
*
26791199 TTTTTCTTTATTCTTCTTCTTTTTCA
1 TTTTT-TTTATTCTTCTTC-CTTTCA
* *
26791225 TTTTTTTTTTTTCCTTGTTCCTTTCA
1 -TTTTTTTTATT-CTTCTTCCTTTCA
26791251 TTTTTTTTAATT-TTCTT
1 TTTTTTTT-ATTCTTCTT
26791268 AATTTTCTCC
Statistics
Matches: 35, Mismatches: 5, Indels: 7
0.74 0.11 0.15
Matches are distributed among these distances:
24 4 0.11
25 8 0.23
26 12 0.34
27 11 0.31
ACGTcount: A:0.07, C:0.16, G:0.01, T:0.75
Consensus pattern (24 bp):
TTTTTTTTATTCTTCTTCCTTTCA
Found at i:26791255 original size:33 final size:33
Alignment explanation
Indices: 26791185--26791255 Score: 83
Period size: 33 Copynumber: 2.2 Consensus size: 33
26791175 TTCTCTTTGT
* *
26791185 ATTTTTCTTTTCTTTTTTTCTTTATTCTTCTTC
1 ATTTTTCTTTTCTTTTTTTCCTTATTCCTCTTC
* *
26791218 -TTTTTCATTTTTTTTTTTTCCTTGTTCCT-TTC
1 ATTTTTC-TTTTCTTTTTTTCCTTATTCCTCTTC
26791250 ATTTTT
1 ATTTTT
26791256 TTTAATTTTC
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
32 9 0.28
33 23 0.72
ACGTcount: A:0.06, C:0.17, G:0.01, T:0.76
Consensus pattern (33 bp):
ATTTTTCTTTTCTTTTTTTCCTTATTCCTCTTC
Found at i:26791773 original size:14 final size:14
Alignment explanation
Indices: 26791733--26791773 Score: 52
Period size: 12 Copynumber: 3.1 Consensus size: 14
26791723 CAATCAAGAA
*
26791733 TTTTTTTCCT-CTT
1 TTTTTTTCTTACTT
26791746 TTTTTTT-TTA-TT
1 TTTTTTTCTTACTT
26791758 TTTTTTTCTTACTT
1 TTTTTTTCTTACTT
26791772 TT
1 TT
26791774 CTTCTTTTAT
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
12 10 0.42
13 10 0.42
14 4 0.17
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (14 bp):
TTTTTTTCTTACTT
Found at i:26791800 original size:28 final size:27
Alignment explanation
Indices: 26791742--26791804 Score: 74
Period size: 27 Copynumber: 2.3 Consensus size: 27
26791732 ATTTTTTTCC
* * *
26791742 TCTTTT-TTTTTTTATTTTTTTTTCTT
1 TCTTTTCTTCTTTTATCTTTTTCTCTT
*
26791768 ACTTTTCTTCTTTTATCTTTTTCTCTTT
1 TCTTTTCTTCTTTTATCTTTTTCTC-TT
26791796 TCTTTTCTT
1 TCTTTTCTT
26791805 TTTGCGTGCC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 5 0.17
27 15 0.50
28 10 0.33
ACGTcount: A:0.05, C:0.16, G:0.00, T:0.79
Consensus pattern (27 bp):
TCTTTTCTTCTTTTATCTTTTTCTCTT
Found at i:26792449 original size:16 final size:16
Alignment explanation
Indices: 26792398--26792449 Score: 56
Period size: 16 Copynumber: 3.3 Consensus size: 16
26792388 AAAAGAACAC
26792398 TTTTT-TTTCCTT-TT
1 TTTTTCTTTCCTTCTT
*
26792412 TTCTTTC-TTCCCTCTCT
1 TT-TTTCTTTCCTTCT-T
26792429 TTTTTCTTTCCTTCTT
1 TTTTTCTTTCCTTCTT
26792445 TTTTT
1 TTTTT
26792450 TTAAAGTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 8
0.76 0.05 0.20
Matches are distributed among these distances:
14 2 0.06
15 8 0.26
16 11 0.35
17 10 0.32
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (16 bp):
TTTTTCTTTCCTTCTT
Found at i:26805502 original size:22 final size:23
Alignment explanation
Indices: 26805472--26805515 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 23
26805462 AATGGGGAGA
26805472 GAAGAAAAA-GAAAAAAAAAAGG
1 GAAGAAAAAGGAAAAAAAAAAGG
*
26805494 GAAGCAAAAGGAAAAAAAAAAG
1 GAAGAAAAAGGAAAAAAAAAAG
26805516 AGTTGTACAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
22 8 0.40
23 12 0.60
ACGTcount: A:0.75, C:0.02, G:0.23, T:0.00
Consensus pattern (23 bp):
GAAGAAAAAGGAAAAAAAAAAGG
Found at i:26811731 original size:22 final size:22
Alignment explanation
Indices: 26811706--26811785 Score: 58
Period size: 22 Copynumber: 3.6 Consensus size: 22
26811696 ACCTCCGAAT
26811706 ATAATCCTTAAGACCTTTAAGC
1 ATAATCCTTAAGACCTTTAAGC
** * * *
26811728 ATAATCCCCAAAACCTCTAGGC
1 ATAATCCTTAAGACCTTTAAGC
26811750 ATAAGT--TGTAAGACCTCTT-AGC
1 ATAA-TCCT-TAAGACCT-TTAAGC
*
26811772 ATAATCTTTAAGAC
1 ATAATCCTTAAGAC
26811786 TCTGGGCATA
Statistics
Matches: 43, Mismatches: 10, Indels: 10
0.68 0.16 0.16
Matches are distributed among these distances:
21 1 0.02
22 39 0.91
23 3 0.07
ACGTcount: A:0.36, C:0.24, G:0.11, T:0.29
Consensus pattern (22 bp):
ATAATCCTTAAGACCTTTAAGC
Found at i:26811794 original size:21 final size:22
Alignment explanation
Indices: 26811726--26811812 Score: 79
Period size: 22 Copynumber: 4.0 Consensus size: 22
26811716 AGACCTTTAA
* * * *
26811726 GCATAATCCCCAAAACCTCTAG
1 GCATAATCTCTAAGACCTCTGG
* **
26811748 GCATAAGT-TGTAAGACCTCTTA
1 GCATAA-TCTCTAAGACCTCTGG
*
26811770 GCATAATCTTTAAGA-CTCTGG
1 GCATAATCTCTAAGACCTCTGG
26811791 GCATAATCTCTAAGACCTCTGG
1 GCATAATCTCTAAGACCTCTGG
26811813 ATATGATTTT
Statistics
Matches: 52, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
21 19 0.37
22 32 0.62
23 1 0.02
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (22 bp):
GCATAATCTCTAAGACCTCTGG
Found at i:26812173 original size:22 final size:22
Alignment explanation
Indices: 26812143--26812192 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
26812133 GACCTCCGAA
*
26812143 CATAGTTTATAAAACTTCCAAG
1 CATAATTTATAAAACTTCCAAG
* *
26812165 CATAATTTATAAAATTTTCAAG
1 CATAATTTATAAAACTTCCAAG
26812187 CATAAT
1 CATAAT
26812193 CTTCAAAAGC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.44, C:0.14, G:0.06, T:0.36
Consensus pattern (22 bp):
CATAATTTATAAAACTTCCAAG
Found at i:26812222 original size:66 final size:66
Alignment explanation
Indices: 26812097--26812223 Score: 148
Period size: 66 Copynumber: 1.9 Consensus size: 66
26812087 AATATCTCTG
* * * ** * *
26812097 AGCATAATTTATAAGAGCTTTATGCATAATCTTCAAGACCTCCGAACATAGTTTATAAAACTTCC
1 AGCATAATTTATAAGAACTTTAAGCATAATCTTCAAAACCTCAAAACATAATCTATAAAACTTCC
26812162 A
66 A
* * *
26812163 AGCATAATTTATAA-AATTTTCAAGCATAATCTTCAAAAGCTCAAAACATAATCTCTAAAAC
1 AGCATAATTTATAAGAACTTT-AAGCATAATCTTCAAAACCTCAAAACATAATCTATAAAAC
26812224 CTCCGAGTAT
Statistics
Matches: 50, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
65 4 0.08
66 46 0.92
ACGTcount: A:0.43, C:0.19, G:0.08, T:0.31
Consensus pattern (66 bp):
AGCATAATTTATAAGAACTTTAAGCATAATCTTCAAAACCTCAAAACATAATCTATAAAACTTCC
A
Found at i:26812593 original size:29 final size:29
Alignment explanation
Indices: 26812552--26812608 Score: 71
Period size: 29 Copynumber: 2.0 Consensus size: 29
26812542 TATTCTTAGT
* *
26812552 TTTACTTTGGATT-TTGATTTAATTTTAAC
1 TTTAATTTGGATTATT-AGTTAATTTTAAC
*
26812581 TTTAATTTTGATTATTAGTTAATTTTAA
1 TTTAATTTGGATTATTAGTTAATTTTAA
26812609 TTATGATTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
29 22 0.92
30 2 0.08
ACGTcount: A:0.28, C:0.04, G:0.09, T:0.60
Consensus pattern (29 bp):
TTTAATTTGGATTATTAGTTAATTTTAAC
Found at i:26814349 original size:39 final size:38
Alignment explanation
Indices: 26814278--26814409 Score: 142
Period size: 39 Copynumber: 3.4 Consensus size: 38
26814268 TATTTTATCT
* *
26814278 TTATTTGCATGATTATATATTTAATTACATGATATATTA
1 TTATTTACATGATTATATATTTAATTGCATGAT-TATTA
*
26814317 TTATTTACATGATTATATATTTAATTGTATGATTATATA
1 TTATTTACATGATTATATATTTAATTGCATGATTAT-TA
* * *
26814356 TTGAATTACATGA-TATAT-TATTATTTGCATGATTAATTG
1 TT-ATTTACATGATTATATAT-TTAATTGCATGATT-ATTA
*
26814395 TTTTTTACATGATTA
1 TTATTTACATGATTA
26814410 GTTTGCCTAA
Statistics
Matches: 79, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
38 12 0.15
39 56 0.71
40 11 0.14
ACGTcount: A:0.34, C:0.05, G:0.09, T:0.52
Consensus pattern (38 bp):
TTATTTACATGATTATATATTTAATTGCATGATTATTA
Found at i:26814352 original size:59 final size:59
Alignment explanation
Indices: 26814277--26814390 Score: 192
Period size: 59 Copynumber: 1.9 Consensus size: 59
26814267 TTATTTTATC
* *
26814277 TTTATTTGCATGATTATATATTTAATTACATGATATATTATTATTTACATGATTATATA
1 TTTAATTGCATGATTATATATTGAATTACATGATATATTATTATTTACATGATTATATA
* *
26814336 TTTAATTGTATGATTATATATTGAATTACATGATATATTATTATTTGCATGATTA
1 TTTAATTGCATGATTATATATTGAATTACATGATATATTATTATTTACATGATTA
26814391 ATTGTTTTTT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
59 51 1.00
ACGTcount: A:0.35, C:0.04, G:0.09, T:0.52
Consensus pattern (59 bp):
TTTAATTGCATGATTATATATTGAATTACATGATATATTATTATTTACATGATTATATA
Found at i:26814377 original size:20 final size:20
Alignment explanation
Indices: 26814285--26814373 Score: 112
Period size: 20 Copynumber: 4.5 Consensus size: 20
26814275 TCTTTATTTG
26814285 CATGATTATATATTTAATTA
1 CATGATTATATATTTAATTA
*
26814305 CATGA-TATAT-TATTATTTA
1 CATGATTATATAT-TTAATTA
*
26814324 CATGATTATATATTTAATTG
1 CATGATTATATATTTAATTA
* *
26814344 TATGATTATATATTGAATTA
1 CATGATTATATATTTAATTA
26814364 CATGA-TATAT
1 CATGATTATAT
26814374 TATTATTTGC
Statistics
Matches: 59, Mismatches: 7, Indels: 7
0.81 0.10 0.10
Matches are distributed among these distances:
18 1 0.02
19 21 0.36
20 36 0.61
21 1 0.02
ACGTcount: A:0.38, C:0.04, G:0.08, T:0.49
Consensus pattern (20 bp):
CATGATTATATATTTAATTA
Found at i:26814408 original size:19 final size:20
Alignment explanation
Indices: 26814278--26814409 Score: 114
Period size: 19 Copynumber: 6.8 Consensus size: 20
26814268 TATTTTATCT
*
26814278 TTATTTGCATGATTATA-TA
1 TTATTTACATGATTATATTA
*
26814297 TTTAATTACATGA-TATATTA
1 -TTATTTACATGATTATATTA
26814317 TTATTTACATGATTATA-TA
1 TTATTTACATGATTATATTA
* **
26814336 TTTAATTGTATGATTATA-TA
1 -TTATTTACATGATTATATTA
*
26814356 TTGAATTACATGA-TATATTA
1 TT-ATTTACATGATTATATTA
* *
26814376 TTATTTGCATGATTA-ATTG
1 TTATTTACATGATTATATTA
*
26814395 TTTTTTACATGATTA
1 TTATTTACATGATTA
26814410 GTTTGCCTAA
Statistics
Matches: 93, Mismatches: 13, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
19 47 0.51
20 46 0.49
ACGTcount: A:0.34, C:0.05, G:0.09, T:0.52
Consensus pattern (20 bp):
TTATTTACATGATTATATTA
Found at i:26814509 original size:13 final size:13
Alignment explanation
Indices: 26814466--26814510 Score: 54
Period size: 13 Copynumber: 3.2 Consensus size: 13
26814456 GTGATATTTT
26814466 ATATTATTGCATG
1 ATATTATTGCATG
26814479 ATAATATATCTGCATG
1 AT-AT-TAT-TGCATG
*
26814495 ATATTATTGCTTG
1 ATATTATTGCATG
26814508 ATA
1 ATA
26814511 AATTTTTTTA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
13 10 0.36
14 5 0.18
15 5 0.18
16 8 0.29
ACGTcount: A:0.33, C:0.09, G:0.13, T:0.44
Consensus pattern (13 bp):
ATATTATTGCATG
Found at i:26829621 original size:22 final size:22
Alignment explanation
Indices: 26829588--26829675 Score: 74
Period size: 22 Copynumber: 3.9 Consensus size: 22
26829578 CGTTTCAAGG
26829588 CCTCTGAGCATAATTTATAAGA
1 CCTCTGAGCATAATTTATAAGA
26829610 CCTCTGTA-CATAATCTT-TCAAAGA
1 CCTCTG-AGCATAAT-TTAT--AAGA
* *
26829634 CCTTCGGA-CATAGTTTATAAGA
1 CC-TCTGAGCATAATTTATAAGA
* *
26829656 CTTCTAAGCATAATTTATAA
1 CCTCTGAGCATAATTTATAA
26829676 AATCTTCAAG
Statistics
Matches: 53, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
21 3 0.06
22 29 0.55
23 5 0.09
24 13 0.25
25 3 0.06
ACGTcount: A:0.35, C:0.19, G:0.11, T:0.34
Consensus pattern (22 bp):
CCTCTGAGCATAATTTATAAGA
Found at i:26829686 original size:22 final size:22
Alignment explanation
Indices: 26829642--26829691 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
26829632 GACCTTCGGA
* *
26829642 CATAGTTTATAAGACTTCTAAG
1 CATAATTTATAAAACTTCTAAG
26829664 CATAATTTATAAAATCTTC-AAG
1 CATAATTTATAAAA-CTTCTAAG
26829686 CATAAT
1 CATAAT
26829692 CTTCAAGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.42, C:0.14, G:0.08, T:0.36
Consensus pattern (22 bp):
CATAATTTATAAAACTTCTAAG
Done.