Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 161 of 195
Found at i:26831761 original size:19 final size:20
Alignment explanation
Indices: 26831737--26831777 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
26831727 AAAAACTTTG
26831737 TTATATC-TTGCATGATATT
1 TTATATCATTGCATGATATT
*
26831756 TTATATCATTGTATGATATT
1 TTATATCATTGCATGATATT
26831776 TT
1 TT
26831778 TGCTGAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.27, C:0.07, G:0.10, T:0.56
Consensus pattern (20 bp):
TTATATCATTGCATGATATT
Found at i:26831855 original size:20 final size:20
Alignment explanation
Indices: 26831823--26831927 Score: 103
Period size: 20 Copynumber: 5.3 Consensus size: 20
26831813 CTTTGTTTGG
26831823 ATGATTATATATTTAATTGC
1 ATGATTATATATTTAATTGC
* *
26831843 ATGA-TATAT-TATTATTTAC
1 ATGATTATATAT-TTAATTGC
*
26831862 ATGATTATATATTTAATTGT
1 ATGATTATATATTTAATTGC
* *
26831882 ATGATTATATATTGAATTAC
1 ATGATTATATATTTAATTGC
26831902 ATGA-TATATTATTGT--TTGC
1 ATGATTATA-TATT-TAATTGC
26831921 ATGATTA
1 ATGATTA
26831928 ATTATTTTTT
Statistics
Matches: 69, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
18 1 0.01
19 26 0.38
20 41 0.59
21 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.50
Consensus pattern (20 bp):
ATGATTATATATTTAATTGC
Found at i:26831864 original size:19 final size:18
Alignment explanation
Indices: 26831823--26831946 Score: 86
Period size: 19 Copynumber: 6.4 Consensus size: 18
26831813 CTTTGTTTGG
* *
26831823 ATGATTATATATTTAATTGC
1 ATGATTAT-TA-TTATTTAC
26831843 ATGATATATTATTATTTAC
1 ATGAT-TATTATTATTTAC
* **
26831862 ATGATTATATATTTAATTGT
1 ATGATTAT-TA-TTATTTAC
*
26831882 ATGATTATATATTGAATTAC
1 ATGATTAT-TATT-ATTTAC
* *
26831902 ATGATATATTATTGTTTGC
1 ATGAT-TATTATTATTTAC
*
26831921 ATGATTAATTATTTTTTAC
1 ATGATT-ATTATTATTTAC
26831940 ATGATTA
1 ATGATTA
26831947 GTTTGCCTAA
Statistics
Matches: 86, Mismatches: 12, Indels: 14
0.77 0.11 0.12
Matches are distributed among these distances:
18 5 0.06
19 39 0.45
20 36 0.42
21 6 0.07
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.52
Consensus pattern (18 bp):
ATGATTATTATTATTTAC
Found at i:26831866 original size:39 final size:38
Alignment explanation
Indices: 26831823--26831946 Score: 146
Period size: 39 Copynumber: 3.2 Consensus size: 38
26831813 CTTTGTTTGG
26831823 ATGATTATATATTTAATTGCATGATATATTATTATTTAC
1 ATGATTATATATTTAATTGCATGAT-TATTATTATTTAC
* *
26831862 ATGATTATATATTTAATTGTATGATTATATATTGAATTAC
1 ATGATTATATATTTAATTGCATGATTAT-TATT-ATTTAC
*
26831902 ATGA-TATATTATTGT--TTGCATGATTAATTATTTTTTAC
1 ATGATTATA-TATT-TAATTGCATGATT-ATTATTATTTAC
26831940 ATGATTA
1 ATGATTA
26831947 GTTTGCCTAA
Statistics
Matches: 74, Mismatches: 5, Indels: 12
0.81 0.05 0.13
Matches are distributed among these distances:
38 11 0.15
39 47 0.64
40 15 0.20
41 1 0.01
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.52
Consensus pattern (38 bp):
ATGATTATATATTTAATTGCATGATTATTATTATTTAC
Found at i:26833031 original size:15 final size:15
Alignment explanation
Indices: 26833011--26833064 Score: 63
Period size: 15 Copynumber: 3.5 Consensus size: 15
26833001 CTAAGGGATA
26833011 GAAAAATTAAAAGAT
1 GAAAAATTAAAAGAT
*
26833026 GAAAAATTAAAAGAG
1 GAAAAATTAAAAGAT
*
26833041 GAGAAAAGTAAAAAGAT
1 GA-AAAA-TTAAAAGAT
*
26833058 AAAAAAT
1 GAAAAAT
26833065 ATATATATTT
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
15 17 0.52
16 8 0.24
17 8 0.24
ACGTcount: A:0.69, C:0.00, G:0.17, T:0.15
Consensus pattern (15 bp):
GAAAAATTAAAAGAT
Found at i:26837194 original size:2 final size:2
Alignment explanation
Indices: 26837187--26837217 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
26837177 ATTAACATGA
26837187 AT AT AT AT AT AT AT AT AT AT AT AT AT GAT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT
26837218 CCCTAAAAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26839448 original size:16 final size:16
Alignment explanation
Indices: 26839427--26839480 Score: 51
Period size: 16 Copynumber: 3.5 Consensus size: 16
26839417 CGTGATAGTT
26839427 ATATCATATACAATAA
1 ATATCATATACAATAA
26839443 ATATCATA-ATC-A-AA
1 ATATCATATA-CAATAA
* **
26839457 TTATTTTATACAATAA
1 ATATCATATACAATAA
26839473 ATATCATA
1 ATATCATA
26839481 ATCAAATTAT
Statistics
Matches: 28, Mismatches: 6, Indels: 8
0.67 0.14 0.19
Matches are distributed among these distances:
14 8 0.29
15 4 0.14
16 16 0.57
ACGTcount: A:0.52, C:0.11, G:0.00, T:0.37
Consensus pattern (16 bp):
ATATCATATACAATAA
Found at i:26839469 original size:30 final size:30
Alignment explanation
Indices: 26839433--26839492 Score: 120
Period size: 30 Copynumber: 2.0 Consensus size: 30
26839423 AGTTATATCA
26839433 TATACAATAAATATCATAATCAAATTATTT
1 TATACAATAAATATCATAATCAAATTATTT
26839463 TATACAATAAATATCATAATCAAATTATTT
1 TATACAATAAATATCATAATCAAATTATTT
26839493 CTCTAAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (30 bp):
TATACAATAAATATCATAATCAAATTATTT
Found at i:26839930 original size:32 final size:32
Alignment explanation
Indices: 26839888--26839967 Score: 88
Period size: 32 Copynumber: 2.5 Consensus size: 32
26839878 TTTATCATAT
* *
26839888 ATATATTAATAAAAAAAAATCAAACATATAAA
1 ATATAATAATAAAAAAAAATCAAACACATAAA
* * * *
26839920 ATATACTAATAAAACATAATCAAGCACATAAA
1 ATATAATAATAAAAAAAAATCAAACACATAAA
*
26839952 ATTATAAAAATAAAAA
1 A-TATAATAATAAAAA
26839968 TACTACCAAA
Statistics
Matches: 39, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
32 28 0.72
33 11 0.28
ACGTcount: A:0.66, C:0.09, G:0.01, T:0.24
Consensus pattern (32 bp):
ATATAATAATAAAAAAAAATCAAACACATAAA
Found at i:26840026 original size:21 final size:21
Alignment explanation
Indices: 26839977--26840027 Score: 84
Period size: 21 Copynumber: 2.4 Consensus size: 21
26839967 ATACTACCAA
* *
26839977 AATAACAATTAAAATTTTAAG
1 AATAACACTAAAAATTTTAAG
26839998 AATAACACTAAAAATTTTAAG
1 AATAACACTAAAAATTTTAAG
26840019 AATAACACT
1 AATAACACT
26840028 TTCAAATTAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.57, C:0.10, G:0.04, T:0.29
Consensus pattern (21 bp):
AATAACACTAAAAATTTTAAG
Found at i:26847411 original size:13 final size:13
Alignment explanation
Indices: 26847373--26847413 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
26847363 GAGTACAATC
26847373 TAATGTTATATTA
1 TAATGTTATATTA
*
26847386 GAAT-TTATCATTA
1 TAATGTTAT-ATTA
26847399 TAATGTTATATTA
1 TAATGTTATATTA
26847412 TA
1 TA
26847414 TCATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 4 0.17
13 16 0.67
14 4 0.17
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.51
Consensus pattern (13 bp):
TAATGTTATATTA
Found at i:26849088 original size:21 final size:21
Alignment explanation
Indices: 26849064--26849112 Score: 53
Period size: 21 Copynumber: 2.3 Consensus size: 21
26849054 TAAAATGTTT
* *
26849064 CATGCTCTTGCTCCATTCTAG
1 CATGCTCTTCCTCAATTCTAG
* * *
26849085 CATGTTCTTCCTCAATTTTGG
1 CATGCTCTTCCTCAATTCTAG
26849106 CATGCTC
1 CATGCTC
26849113 CTACTTTCTT
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.14, C:0.31, G:0.14, T:0.41
Consensus pattern (21 bp):
CATGCTCTTCCTCAATTCTAG
Found at i:26853610 original size:21 final size:21
Alignment explanation
Indices: 26853586--26853630 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
26853576 CTTCATTACT
26853586 TTGAACATCAAGATCACCAAC
1 TTGAACATCAAGATCACCAAC
** * *
26853607 TTGAGTATTAATATCACCAAC
1 TTGAACATCAAGATCACCAAC
26853628 TTG
1 TTG
26853631 TGTAATATGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.38, C:0.22, G:0.11, T:0.29
Consensus pattern (21 bp):
TTGAACATCAAGATCACCAAC
Found at i:26856649 original size:239 final size:237
Alignment explanation
Indices: 26856164--26857199 Score: 1023
Period size: 239 Copynumber: 4.3 Consensus size: 237
26856154 ATTTTCTACT
* * * * **
26856164 AAAAACATCTTCAATAAATTCCTTTTAAAAATTGTTTAGGATTAATAAAGGCGCCTTCTAGTAGA
1 AAAAACACCTTTAATAAATTCTTTTTAAAAATTGTTTAGGATTATTAAAGGCATCTTCTAGTAGA
** * *
26856229 AAATGCCTTCAATATTCTGCTACTAAATTGT-AAGACGGTTAGTGAAGGTATTTATTCCAGAAAA
66 AAATGCCTTCAATATTCCACTACTAAATT-TCAAGACGATTAGTGAAGGCATTTATTCCAGAAAA
* * * *
26856293 ATGCCTTCACTAATTCGTTCTAATTTTTGAATA-AATTTATTGAAGGCATTTTTCGCATTATATG
130 ATGCCTTCACTAATTCATTCTAATTTTTGAA-AGAATTTATTGAAGGTATTTTTTGC-TTATACG
* * ** * * *
26856357 CCTTAAATAATTTTTGTATAGAATTATTGCAGGTGTTTTTTAAGA
193 CCTTCAATAATTTTTGTACAGAATTATTAAAGGCGTTTCTTGAGA
* * * *
26856402 GAAAACGCCTTTAATAAATTCTTTTTAAAAATTGTTT-GAGATTATTAAAGGTATCTTCTAGTAA
1 AAAAACACCTTTAATAAATTCTTTTTAAAAATTGTTTAG-GATTATTAAAGGCATCTTCTAGTAG
* *
26856466 AAAATACCTTCAATATTCCACTACTAAATTTCAAGACGATTAGTGAAGGCATTTATTCCAAAAAA
65 AAAATGCCTTCAATATTCCACTACTAAATTTCAAGACGATTAGTGAAGGCATTTATTCC-AGAAA
* * **
26856531 AATACCTTCATTAATTTGTTCTAATTTTTGAAAGAATTTATTGAAGGTATTTTTTGCATTATACG
129 AATGCCTTCACTAATTCATTCTAATTTTTGAAAGAATTTATTGAAGGTATTTTTTGC-TTATACG
* *
26856596 CCTTCAATAATTTTTGTACAGAATTATTGAAGGTGTTTCTTGAGA
193 CCTTCAATAATTTTTGTACAGAATTATTAAAGGCGTTTCTTGAGA
* * * * * * * *
26856641 AAAAACGCCTTTAATAAGTT-TCTTTTAAAATTTTTTTGGGTTTATTAAAGGCATTTTTTAGTAG
1 AAAAACACCTTTAATAAATTCT-TTTTAAAAATTGTTTAGGATTATTAAAGGCATCTTCTAGTAG
* * * * * * * * ** *
26856705 AAAATGCCTTTAATACTCCA-TAACTAAAATTTTAATATGGTTATTGAACGTGTTTATTCCACAA
65 AAAATGCCTTCAATATTCCACT-ACT-AAATTTCAAGACGATTAGTGAAGGCATTTATTCCAGAA
* * * ** *
26856769 ATACGCCTTCACTAATCCATAGTAA-TTTTGAAAGAATTTATTGAAGGTATTTTTTGCTAAATAC
128 AAATGCCTTCACTAATTCATTCTAATTTTTGAAAGAATTTATTGAAGGTATTTTTTGCT-TATAC
* * * * *
26856833 ACCTTTAATAATTTTTGTAGATAATTATCAAAGGCGTTTCTTGAGA
192 GCCTTCAATAATTTTTGTACAGAATTATTAAAGGCGTTTCTTGAGA
* * * * * * * * *
26856879 AAAAATACCTTCAATAATTTCATTTTAAAAATTATTTAGGATTAATAAAGACGTCTTCCAGTAGA
1 AAAAACACCTTTAATAAATTCTTTTTAAAAATTGTTTAGGATTATTAAAGGCATCTTCTAGTAGA
* * * * * *
26856944 AAATGCTTTCAATATTCCTCTACAAAAATTGCAAGAC-AGTTAGTCAAGGCGTTTATTCCAGAAA
66 AAATGCCTTCAATATTCCACTAC-TAAATTTCAAGACGA-TTAGTGAAGGCATTTATTCCAGAAA
** *
26857008 AATGCCTTCGTTAATTCATTCTAATTTTTGAAAGAATTTATTGAAGGTATTTTTTG-TTGAATAT
129 AATGCCTTCACTAATTCATTCTAATTTTTGAAAGAATTTATTGAAGGTATTTTTTGCTT--ATAC
* * * * *
26857072 GCCTTCAATTATTTTTGTACAAAATTATTAAAGGCATTTTTTTAGA
192 GCCTTCAATAATTTTTGTACAGAATTATTAAAGGCGTTTCTTGAGA
* * *
26857118 ATAAACACCTTTAAT-AATTTTCTTTTAAAAATTGTTTAGGATTATTAAAGGCGTCTT-TCAGT-
1 AAAAACACCTTTAATAAATTCT-TTTTAAAAATTGTTTAGGATTATTAAAGGCATCTTCT-AGTA
* *
26857180 GAAAAATGCTTTTAATATTC
64 G-AAAATGCCTTCAATATTC
26857200 ATTTTAATTT
Statistics
Matches: 655, Mismatches: 124, Indels: 37
0.80 0.15 0.05
Matches are distributed among these distances:
237 3 0.00
238 298 0.45
239 327 0.50
240 27 0.04
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (237 bp):
AAAAACACCTTTAATAAATTCTTTTTAAAAATTGTTTAGGATTATTAAAGGCATCTTCTAGTAGA
AAATGCCTTCAATATTCCACTACTAAATTTCAAGACGATTAGTGAAGGCATTTATTCCAGAAAAA
TGCCTTCACTAATTCATTCTAATTTTTGAAAGAATTTATTGAAGGTATTTTTTGCTTATACGCCT
TCAATAATTTTTGTACAGAATTATTAAAGGCGTTTCTTGAGA
Found at i:26857079 original size:477 final size:475
Alignment explanation
Indices: 26856164--26857197 Score: 1159
Period size: 477 Copynumber: 2.2 Consensus size: 475
26856154 ATTTTCTACT
* * * * * ** *
26856164 AAAAACATCTTCAATAAATTCCTTTTAAAAATTGTTTAGGATTAATAAAGGCGCCTTCTAGTAGA
1 AAAAACACCTTTAATAAGTTTCTTTTAAAAATTGTTTAGGATTATTAAAGGCATCTTTTAGTAGA
* * * *
26856229 AAATGCCTTCAATATTCTGCTACTAAATTGTAAGACGGTTAGTGAAGGTATTTATTCCAGAAAAA
66 AAATGCCTTTAATA-TCTCCTACTAAATTGTAAGACGGTTAGTGAACGTATTTATTCCACAAAAA
* * * * * **
26856294 TGCCTTCACTAATTCGTTCTAATTTTTGAATAAATTTATTGAAGGCATTTTTCGCATTATATGCC
130 CGCCTTCACTAATCCATACTAATTTTTGAATAAATTTATTGAAGGCATTTTTCGCATAATACACC
* *** * * * * * *
26856359 TTAAATAATTTTTGTATAGAATTATTGCAGGTGTTTTTTAAGAGAAAACGCCTTTAATAAATTCT
195 TTAAATAATTTTTGTAGAGAATTATCAAAGGCGTTTCTTAAGAAAAAACACCTTCAATAAATTCA
* * ** *
26856424 TTTTAAAAATTGTTTGAGATTATTAAAGGTATCTTCTAGTAAAAAATACCTTCAATATTCCACTA
260 TTTTAAAAATTATTTGAGATTAATAAAGACATCTTCCAGTAAAAAATACCTTCAATATTCCACTA
* * * **
26856489 CTAAATTTCAAGACGATTAGTGAAGGCATTTATTCCAAAAAAAATACCTTCATTAATTTGTTCTA
325 CAAAATTGCAAGACGATTAGTCAAGGCATTTATTCCAAAAAAAATACCTTCATTAATTCATTCTA
*
26856554 ATTTTTGAAAGAATTTATTGAAGGTATTTTTTGCATTATACGCCTTCAATAATTTTTGTACAGAA
390 ATTTTTGAAAGAATTTATTGAAGGTATTTTTTG-ATTATACGCCTTCAATAATTTTTGTACAAAA
* **
26856619 TTATTGAAGGTGTTTCTTGAGA
454 TTATTAAAGGCATTTCTTGAGA
* * * * * *
26856641 AAAAACGCCTTTAATAAGTTTCTTTTAAAATTTTTTTGGGTTTATTAAAGGCATTTTTTAGTAGA
1 AAAAACACCTTTAATAAGTTTCTTTTAAAAATTGTTTAGGATTATTAAAGGCATCTTTTAGTAGA
* * * * *
26856706 AAATGCCTTTAATA-CTCCATAACTAAAATTTTAATATGGTTATTGAACGTGTTTATTCCACAAA
66 AAATGCCTTTAATATCTCC-T-ACT-AAATTGTAAGACGGTTAGTGAACGTATTTATTCCACAAA
* * * *
26856770 TACGCCTTCACTAATCCATAGTAA-TTTTGAA-AGAATTTATTGAAGGTATTTTTTGC-TAAATA
128 AACGCCTTCACTAATCCATACTAATTTTTGAATA-AATTTATTGAAGGCATTTTTCGCAT-AATA
* * * * *
26856832 CACCTTTAATAATTTTTGTAGATAATTATCAAAGGCGTTTCTTGAGAAAAAATACCTTCAATAAT
191 CACCTTAAATAATTTTTGTAGAGAATTATCAAAGGCGTTTCTTAAGAAAAAACACCTTCAATAAA
* * * *
26856897 TTCATTTTAAAAATTATTT-AGGATTAATAAAGACGTCTTCCAGTAGAAAATGCTTTCAATATTC
256 TTCATTTTAAAAATTATTTGA-GATTAATAAAGACATCTTCCAGTAAAAAATACCTTCAATATTC
* * * * *
26856961 CTCTACAAAAATTGCAAGAC-AGTTAGTCAAGGCGTTTATTCC-AGAAAAATGCCTTCGTTAATT
320 CACTAC-AAAATTGCAAGACGA-TTAGTCAAGGCATTTATTCCAAAAAAAATACCTTCATTAATT
* *
26857024 CATTCTAATTTTTGAAAGAATTTATTGAAGGTATTTTTTG-TTGAATATGCCTTCAATTATTTTT
383 CATTCTAATTTTTGAAAGAATTTATTGAAGGTATTTTTTGATT--ATACGCCTTCAATAATTTTT
* *
26857088 GTACAAAATTATTAAAGGCATTTTTTTAGA
446 GTACAAAATTATTAAAGGCATTTCTTGAGA
* * * *
26857118 ATAAACACCTTTAATAATTTTCTTTTAAAAATTGTTTAGGATTATTAAAGGCGTCTTTCAGT-GA
1 AAAAACACCTTTAATAAGTTTCTTTTAAAAATTGTTTAGGATTATTAAAGGCATCTTTTAGTAG-
*
26857182 AAAATGCTTTTAATAT
65 AAAATGCCTTTAATAT
26857198 TCATTTTAAT
Statistics
Matches: 458, Mismatches: 87, Indels: 23
0.81 0.15 0.04
Matches are distributed among these distances:
475 5 0.01
476 5 0.01
477 369 0.81
478 79 0.17
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (475 bp):
AAAAACACCTTTAATAAGTTTCTTTTAAAAATTGTTTAGGATTATTAAAGGCATCTTTTAGTAGA
AAATGCCTTTAATATCTCCTACTAAATTGTAAGACGGTTAGTGAACGTATTTATTCCACAAAAAC
GCCTTCACTAATCCATACTAATTTTTGAATAAATTTATTGAAGGCATTTTTCGCATAATACACCT
TAAATAATTTTTGTAGAGAATTATCAAAGGCGTTTCTTAAGAAAAAACACCTTCAATAAATTCAT
TTTAAAAATTATTTGAGATTAATAAAGACATCTTCCAGTAAAAAATACCTTCAATATTCCACTAC
AAAATTGCAAGACGATTAGTCAAGGCATTTATTCCAAAAAAAATACCTTCATTAATTCATTCTAA
TTTTTGAAAGAATTTATTGAAGGTATTTTTTGATTATACGCCTTCAATAATTTTTGTACAAAATT
ATTAAAGGCATTTCTTGAGA
Found at i:26858096 original size:25 final size:24
Alignment explanation
Indices: 26858042--26858101 Score: 66
Period size: 25 Copynumber: 2.5 Consensus size: 24
26858032 GATATTAGTA
*
26858042 TGCTGAATTGTATGCTAAATAGCT
1 TGCTGAATGGTATGCTAAATAGCT
* * * *
26858066 TACTGAATGGTATTTCTAAATGGTT
1 TGCTGAATGGTA-TGCTAAATAGCT
26858091 TGCTGAATGGT
1 TGCTGAATGGT
26858102 GTTTTTGAAT
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
24 10 0.34
25 19 0.66
ACGTcount: A:0.27, C:0.10, G:0.23, T:0.40
Consensus pattern (24 bp):
TGCTGAATGGTATGCTAAATAGCT
Found at i:26861578 original size:125 final size:125
Alignment explanation
Indices: 26861356--26861623 Score: 323
Period size: 125 Copynumber: 2.1 Consensus size: 125
26861346 TAATAAGATG
* * * * *
26861356 TTATTGAAGGCATTTTTGACCAAAGCAGCCTTCAATAATCCCACCTAAAAATTTATTGTGTGGAA
1 TTATTGAAGGCATTTTTGACAAAAACAGCCTTAAATAAGCCCAACTAAAAATTTATTGTGTGGAA
* * *
26861421 TATTAAAGGCATTTTAGGTCAAAAATGCCTTTAAGAAT-TCGTTCAACTTTTTTGT-ATGGA
66 TATTAAAGGCATTTCAGGCCAAAAATGCCTTTAAGAATCT-GTTCAA-TATTTTGTCATGGA
**
26861481 TTATTGAAGGCATTTTTGACAAAAATTGCCTTAAATAAGCCCAACTAAAAATTTATTGAT-TGGA
1 TTATTGAAGGCATTTTTGACAAAAACAGCCTTAAATAAGCCCAACTAAAAATTTATTG-TGTGGA
* *
26861545 TTATTAAAGGTGC-TTTCA-GCCAAAAATGCCTTTAAGAATCTGTTCCATATTTTGTCGATGGA
65 ATATTAAA-G-GCATTTCAGGCCAAAAATGCCTTTAAGAATCTGTTCAATATTTTGTC-ATGGA
26861607 TTATT-AAGGGCATTTTT
1 TTATTGAA-GGCATTTTT
26861624 TTTGCCAAAA
Statistics
Matches: 124, Mismatches: 12, Indels: 13
0.83 0.08 0.09
Matches are distributed among these distances:
124 7 0.06
125 89 0.72
126 26 0.21
127 2 0.02
ACGTcount: A:0.33, C:0.14, G:0.16, T:0.37
Consensus pattern (125 bp):
TTATTGAAGGCATTTTTGACAAAAACAGCCTTAAATAAGCCCAACTAAAAATTTATTGTGTGGAA
TATTAAAGGCATTTCAGGCCAAAAATGCCTTTAAGAATCTGTTCAATATTTTGTCATGGA
Found at i:26863961 original size:20 final size:20
Alignment explanation
Indices: 26863936--26864016 Score: 105
Period size: 20 Copynumber: 4.2 Consensus size: 20
26863926 CACAAATAAA
* *
26863936 TATATTAATAATCATACAAT
1 TATATTAATAAACATGCAAT
26863956 TATATTAATAAACATGCAAT
1 TATATTAATAAACATGCAAT
*
26863976 TATA--AATAATCATGCAA-
1 TATATTAATAAACATGCAAT
*
26863993 AATATTAATAAACATGCAAT
1 TATATTAATAAACATGCAAT
26864013 TATA
1 TATA
26864017 AATATAATCA
Statistics
Matches: 52, Mismatches: 6, Indels: 6
0.81 0.09 0.09
Matches are distributed among these distances:
17 3 0.06
18 12 0.23
19 12 0.23
20 25 0.48
ACGTcount: A:0.52, C:0.10, G:0.04, T:0.35
Consensus pattern (20 bp):
TATATTAATAAACATGCAAT
Found at i:26864002 original size:37 final size:39
Alignment explanation
Indices: 26863942--26864037 Score: 142
Period size: 37 Copynumber: 2.5 Consensus size: 39
26863932 TAAATATATT
* *
26863942 AATAATCATACAATTATATTAATAAACATGCAATTAT-A
1 AATAATCATGCAATAATATTAATAAACATGCAATTATAA
26863980 AATAATCATGCAA-AATATTAATAAACATGCAATTATAA
1 AATAATCATGCAATAATATTAATAAACATGCAATTATAA
26864018 ATATAATCATGCAAGTAATA
1 A-ATAATCATGCAA-TAATA
26864038 ATATAAATCA
Statistics
Matches: 52, Mismatches: 2, Indels: 5
0.88 0.03 0.08
Matches are distributed among these distances:
37 22 0.42
38 14 0.27
39 12 0.23
41 4 0.08
ACGTcount: A:0.53, C:0.10, G:0.05, T:0.31
Consensus pattern (39 bp):
AATAATCATGCAATAATATTAATAAACATGCAATTATAA
Found at i:26864029 original size:57 final size:60
Alignment explanation
Indices: 26863937--26864099 Score: 183
Period size: 61 Copynumber: 2.7 Consensus size: 60
26863927 ACAAATAAAT
* * * * *
26863937 ATATTAATAATCATACAATTATATTAATA-AACATGCAA-TTATAA-AT-AATC-ATGCAAA
1 ATATTAATAAACATGCAATTATA--AATATAACATGCAAGTAATAATATAAATCAAGGAAAA
26863994 ATATTAATAAACATGCAATTATAAATATAATCATGCAAGTAATAATATAAATCAAGGAAAA
1 ATATTAATAAACATGCAATTATAAATATAA-CATGCAAGTAATAATATAAATCAAGGAAAA
* **
26864055 ATATTGATAAACATGCAAAAATAAATATAAGCATGCAAGTAATAA
1 ATATTAATAAACATGCAATTATAAATATAA-CATGCAAGTAATAA
26864100 CATATCATAC
Statistics
Matches: 91, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
55 4 0.04
56 2 0.02
57 28 0.31
58 5 0.05
59 2 0.02
60 4 0.04
61 46 0.51
ACGTcount: A:0.55, C:0.09, G:0.07, T:0.29
Consensus pattern (60 bp):
ATATTAATAAACATGCAATTATAAATATAACATGCAAGTAATAATATAAATCAAGGAAAA
Found at i:26864040 original size:20 final size:19
Alignment explanation
Indices: 26863943--26864138 Score: 101
Period size: 20 Copynumber: 9.9 Consensus size: 19
26863933 AAATATATTA
* * *
26863943 ATAATCATACAATTATATT
1 ATAATCATGCAATAATAAT
* *
26863962 AATAAACATGCAATTATAA-
1 -ATAATCATGCAATAATAAT
*
26863981 ATAATCATGCAA-AATATT
1 ATAATCATGCAATAATAAT
* *
26863999 AATAAACATGCAATTATAAAT
1 -ATAATCATGCAATAAT-AAT
26864020 ATAATCATGCAAGTAATAAT
1 ATAATCATGCAA-TAATAAT
* * * *
26864040 ATAAATCAAGGAAAAATATT
1 AT-AATCATGCAATAATAAT
* *
26864060 GATAAACATGCAAAAATAAAT
1 -ATAATCATGCAATAAT-AAT
* *
26864081 ATAAGCATGCAAGTAATAAC
1 ATAATCATGCAA-TAATAAT
* *
26864101 AT-ATCATACAAATAATTAT
1 ATAATCATGC-AATAATAAT
*
26864120 TTAAATCATGCAAGTAATA
1 AT-AATCATGCAA-TAATA
26864139 TCATGCAACA
Statistics
Matches: 134, Mismatches: 29, Indels: 25
0.71 0.15 0.13
Matches are distributed among these distances:
17 3 0.02
18 11 0.08
19 22 0.16
20 68 0.51
21 30 0.22
ACGTcount: A:0.54, C:0.10, G:0.07, T:0.29
Consensus pattern (19 bp):
ATAATCATGCAATAATAAT
Found at i:26864283 original size:4 final size:4
Alignment explanation
Indices: 26864276--26864304 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
26864266 AACAAAAAAA
26864276 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT A
26864305 GAAAATAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:26877556 original size:24 final size:24
Alignment explanation
Indices: 26877513--26877561 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
26877503 GATCATTTAA
* * *
26877513 ACTAAAAGCCTGAAAGGATGGCTT
1 ACTAAAAACCTAAAAAGATGGCTT
26877537 ACTAAAAACCTAAAAAGATGGCTT
1 ACTAAAAACCTAAAAAGATGGCTT
26877561 A
1 A
26877562 AATGAAGGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.20
Consensus pattern (24 bp):
ACTAAAAACCTAAAAAGATGGCTT
Found at i:26877650 original size:150 final size:155
Alignment explanation
Indices: 26877403--26877681 Score: 356
Period size: 151 Copynumber: 1.8 Consensus size: 155
26877393 AAAAGGGCGA
* *
26877403 CTTAAATAAAGGTGGAGCTAGGAGGACATCCTTAAAAAAAAAAAAAACAAAGAGATGGTTTAGAT
1 CTTAAATAAAGGTGGAGCTAGGAGGAAATCCTTAAAAAAAAAAAAAACAAAGACA-GGTTTAGAT
* * * *
26877468 TGAAAACATAAAAAGGGTGGTTTGAA-TAAAAAAATGATCATTTAAACT-AAAAGCCTGAAAGGA
65 TGAAAACATAAAAAGGGTGATCTAAACAAAAAAAATGATCATTTAAACTGAAAA-CCTGAAAGGA
26877531 TGGCTTACTAAAAACCTAAAAAGATGG
129 TGGCTTACTAAAAACCTAAAAAGATGG
* *
26877558 CTTAAATGAAGGTGGAGCTAGGA-GAAATCCTT-AAAAAAAAAACAA-AAAGACA-GTTTAGATT
1 CTTAAATAAAGGTGGAGCTAGGAGGAAATCCTTAAAAAAAAAAAAAACAAAGACAGGTTTAGATT
* * * ** *
26877619 GAAAACCA-CAAAAGGGTTATCTAAACCAAAAAAATGATGGTTTAAACTGAAAACTTGAAAGGA
66 GAAAA-CATAAAAAGGGTGATCTAAACAAAAAAAATGATCATTTAAACTGAAAACCTGAAAGGA
26877682 CGACTTAAAT
Statistics
Matches: 108, Mismatches: 13, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
150 26 0.24
151 30 0.28
152 10 0.09
153 12 0.11
154 8 0.07
155 22 0.20
ACGTcount: A:0.49, C:0.10, G:0.19, T:0.21
Consensus pattern (155 bp):
CTTAAATAAAGGTGGAGCTAGGAGGAAATCCTTAAAAAAAAAAAAAACAAAGACAGGTTTAGATT
GAAAACATAAAAAGGGTGATCTAAACAAAAAAAATGATCATTTAAACTGAAAACCTGAAAGGATG
GCTTACTAAAAACCTAAAAAGATGG
Found at i:26878884 original size:36 final size:36
Alignment explanation
Indices: 26878754--26878951 Score: 105
Period size: 36 Copynumber: 5.5 Consensus size: 36
26878744 CATCTGATCG
* * * * * **
26878754 TTTTTTATGTTTTAACTTGTGGTGTTATCCCGATCA
1 TTTTTTATTTTTTGACTTGTGGTGTCATCTCGTTTT
* * * ** * *
26878790 TTCTTTATTCTTTGACTTGTGGTATTGTCCTAG-TTG
1 TTTTTTATTTTTTGACTTGTGGTGTCAT-CTCGTTTT
** *
26878826 TTTTTT-TTTTTT-ACTTACGGTGTCATCTTGTTTT
1 TTTTTTATTTTTTGACTTGTGGTGTCATCTCGTTTT
** * **
26878860 TTTTTTATTTTTTGACTTGTGGTGTTGTCCCGATCAT
1 TTTTTTATTTTTTGACTTGTGGTGTCATCTCG-TTTT
* ** * * *
26878897 TTTCTTATTTTTCAACTTGTAGTGTCATCTCGGTTA
1 TTTTTTATTTTTTGACTTGTGGTGTCATCTCGTTTT
26878933 TTTTTTATTTTTTGACTTG
1 TTTTTTATTTTTTGACTTG
26878952 CGGTATTGTC
Statistics
Matches: 116, Mismatches: 41, Indels: 10
0.69 0.25 0.06
Matches are distributed among these distances:
33 3 0.03
34 17 0.15
35 11 0.09
36 56 0.48
37 29 0.25
ACGTcount: A:0.13, C:0.13, G:0.16, T:0.59
Consensus pattern (36 bp):
TTTTTTATTTTTTGACTTGTGGTGTCATCTCGTTTT
Found at i:26878915 original size:107 final size:108
Alignment explanation
Indices: 26878693--26878916 Score: 276
Period size: 106 Copynumber: 2.1 Consensus size: 108
26878683 CCTAAGTCAC
* **
26878693 TTCAACTTGTGGTGTTGTCCTAGTTGTTTTCTTTTTTTCAACTTGTGATGCCATCTGATCGTTTT
1 TTCAACTTGTGGTATTGTCCTAGTTGTTTTCTTTTTTTCAACTTACGATGCCATCTGATCGTTTT
26878758 TTATGTTTTAACTTGTGGTGTTATCCCGATCATTCTTTATTCT
66 TTATGTTTTAACTTGTGGTGTTATCCCGATCATTCTTTATTCT
* * * * * **
26878801 TT-GACTTGTGGTATTGTCCTAGTTGTTTT-TTTTTTT-TACTTACGGTGTCATCTTGTTTTTTT
1 TTCAACTTGTGGTATTGTCCTAGTTGTTTTCTTTTTTTCAACTTACGATGCCATC-TGATCGTTT
* * * *
26878863 TTTATTTTTTGACTTGTGGTGTTGTCCCGATCATTTTCTTATT-T
65 TTTATGTTTTAACTTGTGGTGTTATCCCGATCATTCT-TTATTCT
26878907 TTCAACTTGT
1 TTCAACTTGT
26878917 AGTGTCATCT
Statistics
Matches: 98, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
105 11 0.11
106 49 0.50
107 36 0.37
108 2 0.02
ACGTcount: A:0.12, C:0.15, G:0.17, T:0.56
Consensus pattern (108 bp):
TTCAACTTGTGGTATTGTCCTAGTTGTTTTCTTTTTTTCAACTTACGATGCCATCTGATCGTTTT
TTATGTTTTAACTTGTGGTGTTATCCCGATCATTCTTTATTCT
Found at i:26878988 original size:73 final size:72
Alignment explanation
Indices: 26878793--26878990 Score: 215
Period size: 73 Copynumber: 2.8 Consensus size: 72
26878783 CCGATCATTC
* * * * * *
26878793 TTTATTCTTTGACTTGTGGTATTGT-CCTAGTTGTTT-TT-TTTTTTTACTTACGGTGTCATCTT
1 TTTATTTTTTGACTTGTGGTATTGTCCCGA-TTGTTTCTTATTTTTTAACTTGCAGTGTCATCTC
* *
26878855 GTTTTTTT
65 GGTTATTT
* * *
26878863 TTTATTTTTTGACTTGTGGTGTTGTCCCGATCAT-TTTCTTATTTTTCAACTTGTAGTGTCATCT
1 TTTATTTTTTGACTTGTGGTATTGTCCCGAT--TGTTTCTTATTTTTTAACTTGCAGTGTCATCT
26878927 CGGTTATTT
64 CGGTTATTT
* *
26878936 TTTATTTTTTGACTTGCGGTATTGTCCCGATTGTTTCCTTATTTTTTGACTTGCA
1 TTTATTTTTTGACTTGTGGTATTGTCCCGATTGTTT-CTTATTTTTTAACTTGCA
26878991 ATATTGTCCT
Statistics
Matches: 105, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
70 24 0.23
71 7 0.07
72 6 0.06
73 68 0.65
ACGTcount: A:0.12, C:0.14, G:0.16, T:0.58
Consensus pattern (72 bp):
TTTATTTTTTGACTTGTGGTATTGTCCCGATTGTTTCTTATTTTTTAACTTGCAGTGTCATCTCG
GTTATTT
Found at i:26879014 original size:36 final size:37
Alignment explanation
Indices: 26878933--26879017 Score: 100
Period size: 37 Copynumber: 2.3 Consensus size: 37
26878923 ATCTCGGTTA
** * *
26878933 TTTTTTATTTTTTGACTTGCGGTATTGTCCCGATTGT
1 TTTTTTATTTTTTGACTTGCAATATTGTCCCGAGTCT
** *
26878970 TTCCTTATTTTTTGACTTGCAATATTGT-CCTAGTCT
1 TTTTTTATTTTTTGACTTGCAATATTGTCCCGAGTCT
26879006 TTTTTTATTTTT
1 TTTTTTATTTTT
26879018 AGATTTATGG
Statistics
Matches: 39, Mismatches: 9, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
36 15 0.38
37 24 0.62
ACGTcount: A:0.13, C:0.14, G:0.13, T:0.60
Consensus pattern (37 bp):
TTTTTTATTTTTTGACTTGCAATATTGTCCCGAGTCT
Found at i:26879037 original size:36 final size:36
Alignment explanation
Indices: 26878997--26879066 Score: 106
Period size: 36 Copynumber: 1.9 Consensus size: 36
26878987 TGCAATATTG
*
26878997 TCCTAGTCT-TTTTTTATTTTTAGATTTATGGTGTTC
1 TCCTAGT-TGTTTTTTATTTTTAGAATTATGGTGTTC
*
26879033 TCCTAGTTGTTTTTTATTTTTTGAATTATGGTGT
1 TCCTAGTTGTTTTTTATTTTTAGAATTATGGTGT
26879067 CATCCCGATC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 1 0.03
36 30 0.97
ACGTcount: A:0.14, C:0.09, G:0.16, T:0.61
Consensus pattern (36 bp):
TCCTAGTTGTTTTTTATTTTTAGAATTATGGTGTTC
Found at i:26879265 original size:110 final size:109
Alignment explanation
Indices: 26879041--26879320 Score: 251
Period size: 110 Copynumber: 2.5 Consensus size: 109
26879031 TCTCCTAGTT
* * * * **
26879041 GTTTTT-TATTTTTTGAA-TTATGGTGTCATCCCGATCATTTTCTTATTTTTTAACTTACGATGT
1 GTTTTTGTTTTTTTTCAACTTAT-GTGTCATCCTGATCATTCT-TTATTTTTTAACTTGTGATGT
** * * *
26879104 TGTCTCAATTATTCTTTAGTTTTTGACATGTAGTGTTGTCCCAATC
64 CATCTCAATCATTCTTTAGTTTTTGACATGCAATGTTGTCCCAATC
*
26879150 GTTTTTGTTTTTTTTCAACTTATAGTGTCATCCTGATCATTCTTTATTTTCTAACTTGTGATGTC
1 GTTTTTGTTTTTTTTCAACTTAT-GTGTCATCCTGATCATTCTTTATTTTTTAACTTGTGATGTC
* * ****
26879215 ATCTCGATCATTCTTTA-TATTTTGACTTGCAATGTTGTCTTGGTC
65 ATCTCAATCATTCTTTAGT-TTTTGACATGCAATGTTGTCCCAATC
* * ** * * * *
26879260 TTTTTTTTTTATTTTTTGACTTGTGATGTTATCCTAATCATTCTTTATTTTTTGACTTGTG
1 GTTTTTGTTT-TTTTTCAACTTATG-TGTCATCCTGATCATTCTTTATTTTTTAACTTGTG
26879321 TTATCTAGTC
Statistics
Matches: 138, Mismatches: 28, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
109 7 0.05
110 69 0.50
111 62 0.45
ACGTcount: A:0.17, C:0.14, G:0.13, T:0.55
Consensus pattern (109 bp):
GTTTTTGTTTTTTTTCAACTTATGTGTCATCCTGATCATTCTTTATTTTTTAACTTGTGATGTCA
TCTCAATCATTCTTTAGTTTTTGACATGCAATGTTGTCCCAATC
Found at i:26879344 original size:75 final size:73
Alignment explanation
Indices: 26879192--26879387 Score: 168
Period size: 75 Copynumber: 2.7 Consensus size: 73
26879182 CTGATCATTC
* * *
26879192 TTTATTTTCTAACTTGTGATGTCATCTCGATCATTCTTTATATTTTGACTTGCAATGTTGTCTTG
1 TTTATTTTCTAACTTGTGATGTCATCTCAATCATTCTTTATATTTTGACTTG--ATGTTATCTTA
26879257 GTCTTTTTTT
64 GTCTTTTTTT
* * * *
26879267 TTTATTTTTTGACTTGTGATGTTATC-CTAATCATTCTTTATTTTTTGACTTG-TGTTATC-TAG
1 TTTATTTTCTAACTTGTGATGTCATCTC-AATCATTCTTTATATTTTGACTTGATGTTATCTTAG
* *
26879329 TCATTTTCT
65 TCTTTTTTT
* * * * * *** *
26879338 TAT-TTTTC-GATTTGTGGTGTCGTCTTGGTCATTCTTTATTTTTTGACTTG
1 TTTATTTTCTAACTTGTGATGTCATCTCAATCATTCTTTATATTTTGACTTG
26879388 TGGTGTTGTT
Statistics
Matches: 101, Mismatches: 18, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
69 34 0.34
70 4 0.04
71 11 0.11
72 6 0.06
74 1 0.01
75 45 0.45
ACGTcount: A:0.15, C:0.13, G:0.14, T:0.58
Consensus pattern (73 bp):
TTTATTTTCTAACTTGTGATGTCATCTCAATCATTCTTTATATTTTGACTTGATGTTATCTTAGT
CTTTTTTT
Found at i:26879496 original size:109 final size:106
Alignment explanation
Indices: 26879267--26879603 Score: 347
Period size: 109 Copynumber: 3.1 Consensus size: 106
26879257 GTCTTTTTTT
* * * *
26879267 TTTATTTTTTGACTTGTGATGTTATCCTAATCATTCTTTATTTTTTGAC-T-TGTGTTATCTAGT
1 TTTATTTTTTGACTTGTGGTGTTATCCTAGTCATTCTTTATTTTCTGACTTATGTGTTGT-TAGT
* * * * * * *
26879330 CATTTTCTTATTTTTCGATTTGTGGTGTCGTCTTGGTCATTC
65 CATTTTCTTATTTTTTGACTTGCGATGTCATCTCGGTCGTTC
* * *
26879372 TTTATTTTTTGACTTGTGGTGTTGTTCTAGTCATTCTTTATTTTCTAACTTATGGTGTTGTTATG
1 TTTATTTTTTGACTTGTGGTGTTATCCTAGTCATTCTTTATTTTCTGACTTAT-GTGTTGTTA--
* * * *
26879437 GTTATTTTTTTATTTTTTGACTTGCGATATCATCTCGGTCGTTT
63 GTCATTTTCTTATTTTTTGACTTGCGATGTCATCTCGGTCGTTC
* * * * *
26879481 TTTATTTTTTAACTTGTAGTGTTATCCCAGTCATTCTTTATTGTCTGACTTATAGTGTTGTCCCA
1 TTTATTTTTTGACTTGTGGTGTTATCCTAGTCATTCTTTATTTTCTGACTTAT-GTGTTGT--TA
* * * *
26879546 GTCA-TTTCGTATTTTTTGACTTGCAATGTCATCCCGGTTGTTC
63 GTCATTTTCTTATTTTTTGACTTGCGATGTCATCTCGGTCGTTC
26879589 TTTATTTTTTGACTT
1 TTTATTTTTTGACTT
26879604 ACGGTGTCGT
Statistics
Matches: 189, Mismatches: 36, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
105 43 0.23
106 1 0.01
107 3 0.02
108 52 0.28
109 89 0.47
111 1 0.01
ACGTcount: A:0.15, C:0.14, G:0.16, T:0.55
Consensus pattern (106 bp):
TTTATTTTTTGACTTGTGGTGTTATCCTAGTCATTCTTTATTTTCTGACTTATGTGTTGTTAGTC
ATTTTCTTATTTTTTGACTTGCGATGTCATCTCGGTCGTTC
Found at i:26879521 original size:36 final size:36
Alignment explanation
Indices: 26879114--26879603 Score: 183
Period size: 36 Copynumber: 13.5 Consensus size: 36
26879104 TGTCTCAATT
* * * * *
26879114 ATTCTTTAGTTTTTGACATGTAGTGTTGTCCCAATC
1 ATTCTTTATTTTTTGACTTGTAGTGTTATCCTAGTC
* * * * * *
26879150 GTTTTTGTTTTTTTTCAACTTATAGTGTCATCCT-GATC
1 ATTCTT-TATTTTTT-GACTTGTAGTGTTATCCTAG-TC
* * * *
26879188 ATTCTTTATTTTCTAACTTGT-GATGTCAT-CTCGATC
1 ATTCTTTATTTTTTGACTTGTAG-TGTTATCCTAG-TC
* * * * * *
26879224 ATTCTTTATATTTTGACTTGCAATGTTGTCTTGGTC
1 ATTCTTTATTTTTTGACTTGTAGTGTTATCCTAGTC
* * *
26879260 TTTTTTTTTTATTTTTTGACTTGT-GATGTTATCCTAATC
1 ---ATTCTTTATTTTTTGACTTGTAG-TGTTATCCTAGTC
26879299 ATTCTTTATTTTTTGAC-T-T-GTGTTAT-CTAGTC
1 ATTCTTTATTTTTTGACTTGTAGTGTTATCCTAGTC
* * * * ** * *
26879331 ATTTTCTTATTTTTCGATTTGTGGTGTCGTCTTGGTC
1 ATTCT-TTATTTTTTGACTTGTAGTGTTATCCTAGTC
* * *
26879368 ATTCTTTATTTTTTGACTTGTGGTGTTGTTCTAGTC
1 ATTCTTTATTTTTTGACTTGTAGTGTTATCCTAGTC
* * * * * ** * *
26879404 ATTCTTTATTTTCTAACTTATGGTGTTGTTATGGTT
1 ATTCTTTATTTTTTGACTTGTAGTGTTATCCTAGTC
* * * * *
26879440 ATTTTTTTATTTTTTGACTTG-CGATATCAT-CTCGGTC
1 A-TTCTTTATTTTTTGACTTGTAG-TGTTATCCT-AGTC
* * * *
26879477 GTTTTTTATTTTTTAACTTGTAGTGTTATCCCAGTC
1 ATTCTTTATTTTTTGACTTGTAGTGTTATCCTAGTC
* * * * *
26879513 ATTCTTTATTGTCTGACTTATAGTGTTGTCCCAGTC
1 ATTCTTTATTTTTTGACTTGTAGTGTTATCCTAGTC
* * * * ** *
26879549 ATT-TCGTATTTTTTGACTTGCAATGTCATCCCGGTT
1 ATTCT-TTATTTTTTGACTTGTAGTGTTATCCTAGTC
*
26879585 GTTCTTTATTTTTTGACTT
1 ATTCTTTATTTTTTGACTT
26879604 ACGGTGTCGT
Statistics
Matches: 338, Mismatches: 93, Indels: 46
0.71 0.19 0.10
Matches are distributed among these distances:
32 9 0.03
33 16 0.05
34 3 0.01
35 6 0.02
36 214 0.63
37 46 0.14
38 18 0.05
39 26 0.08
ACGTcount: A:0.16, C:0.14, G:0.15, T:0.55
Consensus pattern (36 bp):
ATTCTTTATTTTTTGACTTGTAGTGTTATCCTAGTC
Found at i:26880888 original size:31 final size:29
Alignment explanation
Indices: 26880850--26880923 Score: 98
Period size: 30 Copynumber: 2.5 Consensus size: 29
26880840 GTTTTTGGTA
26880850 AAAAAAAAAAGAGAAAAGCTAAACACAAAAG
1 AAAAAAAAAAGAGAAAAGCT-AAC-CAAAAG
*
26880881 -AAAAAAAAAGAAGAAAAGCTAACTAAAAG
1 AAAAAAAAAAG-AGAAAAGCTAACCAAAAG
26880910 AAAAAAAAAA-AGAA
1 AAAAAAAAAAGAGAA
26880924 GGATTTTTAA
Statistics
Matches: 40, Mismatches: 1, Indels: 7
0.83 0.02 0.15
Matches are distributed among these distances:
28 4 0.10
29 5 0.12
30 22 0.55
31 9 0.22
ACGTcount: A:0.77, C:0.07, G:0.12, T:0.04
Consensus pattern (29 bp):
AAAAAAAAAAGAGAAAAGCTAACCAAAAG
Found at i:26880917 original size:28 final size:31
Alignment explanation
Indices: 26880851--26880923 Score: 109
Period size: 29 Copynumber: 2.5 Consensus size: 31
26880841 TTTTTGGTAA
26880851 AAAAAAAAAG-AGAAAAGCTAAACACAAAAG
1 AAAAAAAAAGAAGAAAAGCTAAACACAAAAG
*
26880881 AAAAAAAAAGAAGAAAAGCT-AAC-TAAAAG
1 AAAAAAAAAGAAGAAAAGCTAAACACAAAAG
26880910 AAAAAAAAA-AAGAA
1 AAAAAAAAAGAAGAA
26880924 GGATTTTTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 5 0.12
29 14 0.34
30 13 0.32
31 9 0.22
ACGTcount: A:0.77, C:0.07, G:0.12, T:0.04
Consensus pattern (31 bp):
AAAAAAAAAGAAGAAAAGCTAAACACAAAAG
Found at i:26880924 original size:31 final size:31
Alignment explanation
Indices: 26880849--26880924 Score: 104
Period size: 31 Copynumber: 2.5 Consensus size: 31
26880839 GGTTTTTGGT
26880849 AAAAAAAAAAAG-AGAAAAGCTAAACACAAA
1 AAAAAAAAAAAGAAGAAAAGCTAAACACAAA
*
26880879 AGAAAAAAAAAGAAGAAAAGCT-AACTA-AAA
1 AAAAAAAAAAAGAAGAAAAGCTAAAC-ACAAA
26880909 GAAAAAAAAAAAGAAG
1 -AAAAAAAAAAAGAAG
26880925 GATTTTTAAG
Statistics
Matches: 41, Mismatches: 2, Indels: 5
0.85 0.04 0.10
Matches are distributed among these distances:
30 17 0.41
31 24 0.59
ACGTcount: A:0.76, C:0.07, G:0.13, T:0.04
Consensus pattern (31 bp):
AAAAAAAAAAAGAAGAAAAGCTAAACACAAA
Found at i:26881987 original size:3 final size:3
Alignment explanation
Indices: 26881979--26882037 Score: 118
Period size: 3 Copynumber: 19.7 Consensus size: 3
26881969 CTGCATGTTC
26881979 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26882027 TAA TAA TAA TA
1 TAA TAA TAA TA
26882038 CTAAGGTGGA
Statistics
Matches: 56, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:26882992 original size:24 final size:26
Alignment explanation
Indices: 26882953--26883002 Score: 68
Period size: 24 Copynumber: 2.0 Consensus size: 26
26882943 GTCATCAATA
26882953 ATTATTATTTAC-AAA-AAATGTTAT
1 ATTATTATTTACAAAATAAATGTTAT
**
26882977 ATTATTATTTTTAAAATAAATGTTAT
1 ATTATTATTTACAAAATAAATGTTAT
26883003 GATAAATCTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 10 0.45
25 3 0.14
26 9 0.41
ACGTcount: A:0.44, C:0.02, G:0.04, T:0.50
Consensus pattern (26 bp):
ATTATTATTTACAAAATAAATGTTAT
Found at i:26883488 original size:16 final size:17
Alignment explanation
Indices: 26883463--26883495 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
26883453 TGCAACAACC
*
26883463 AGAAAGGAAA-AAAAAA
1 AGAAACGAAAGAAAAAA
26883479 AGAAACGAAAGAAAAAA
1 AGAAACGAAAGAAAAAA
26883496 CTGATGAAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.79, C:0.03, G:0.18, T:0.00
Consensus pattern (17 bp):
AGAAACGAAAGAAAAAA
Found at i:26884614 original size:15 final size:16
Alignment explanation
Indices: 26884575--26884616 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 16
26884565 TTTATATGTT
* *
26884575 TGTTTTGATTTTCATG
1 TGTTTTAATTTTCATA
*
26884591 TGATTTAATTTT-ATA
1 TGTTTTAATTTTCATA
26884606 TGTTTTAATTT
1 TGTTTTAATTT
26884617 ATTTTTGATG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
15 12 0.55
16 10 0.45
ACGTcount: A:0.21, C:0.02, G:0.12, T:0.64
Consensus pattern (16 bp):
TGTTTTAATTTTCATA
Found at i:26884690 original size:3 final size:3
Alignment explanation
Indices: 26884684--26884722 Score: 69
Period size: 3 Copynumber: 13.0 Consensus size: 3
26884674 GTGGTAGTAG
*
26884684 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA CAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
26884723 ACCTCAAATG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.67, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:26886122 original size:3 final size:3
Alignment explanation
Indices: 26886114--26886170 Score: 114
Period size: 3 Copynumber: 19.0 Consensus size: 3
26886104 ATTTTAAAAG
26886114 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
26886162 ATA ATA ATA
1 ATA ATA ATA
26886171 TGGATTTTGA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:26887128 original size:12 final size:13
Alignment explanation
Indices: 26887072--26887127 Score: 60
Period size: 13 Copynumber: 4.4 Consensus size: 13
26887062 CAAGCATAGG
*
26887072 CTAAAATGAAATC
1 CTAAAATGAAACC
26887085 CTAAAATGAAACC
1 CTAAAATGAAACC
* * * *
26887098 TTGAAATAAAACT
1 CTAAAATGAAACC
26887111 CT-AAATGAAACC
1 CTAAAATGAAACC
26887123 CTAAA
1 CTAAA
26887128 TCCTAGGTGA
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
12 10 0.29
13 24 0.71
ACGTcount: A:0.54, C:0.18, G:0.07, T:0.21
Consensus pattern (13 bp):
CTAAAATGAAACC
Found at i:26887140 original size:19 final size:19
Alignment explanation
Indices: 26887106--26887159 Score: 65
Period size: 19 Copynumber: 2.8 Consensus size: 19
26887096 CCTTGAAATA
*
26887106 AAACTCTAAATGAAACCCT
1 AAACTCTAAGTGAAACCCT
* *
26887125 AAA-TCCTAGGTGAAACCTT
1 AAACT-CTAAGTGAAACCCT
26887144 AAACTCTAAGTGAAAC
1 AAACTCTAAGTGAAAC
26887160 TCAAAAGCCT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
18 1 0.03
19 27 0.93
20 1 0.03
ACGTcount: A:0.44, C:0.22, G:0.11, T:0.22
Consensus pattern (19 bp):
AAACTCTAAGTGAAACCCT
Found at i:26887197 original size:19 final size:19
Alignment explanation
Indices: 26887144--26887189 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
26887134 GTGAAACCTT
* *
26887144 AAACTCTAAGTGAAACTCA
1 AAACCCTAAATGAAACTCA
* *
26887163 AAAGCCTAAACGAAACTCA
1 AAACCCTAAATGAAACTCA
26887182 AAACCCTA
1 AAACCCTA
26887190 GTTGAAACCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.50, C:0.26, G:0.09, T:0.15
Consensus pattern (19 bp):
AAACCCTAAATGAAACTCA
Found at i:26888589 original size:21 final size:21
Alignment explanation
Indices: 26888549--26888594 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 21
26888539 ACACCATTCA
26888549 AAAATATTAAATAATCATAC-
1 AAAATATTAAATAATCATACT
*
26888569 AAAATA-TATAATAAATTATACT
1 AAAATATTA-AAT-AATCATACT
26888591 AAAA
1 AAAA
26888595 GTATCATGGA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 2 0.09
20 9 0.41
21 7 0.32
22 4 0.18
ACGTcount: A:0.63, C:0.07, G:0.00, T:0.30
Consensus pattern (21 bp):
AAAATATTAAATAATCATACT
Found at i:26888651 original size:14 final size:15
Alignment explanation
Indices: 26888628--26888660 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
26888618 GTAATAATAT
26888628 AAAA-TATCATG-TA
1 AAAATTATCATGATA
26888641 AAAATTATCATGATA
1 AAAATTATCATGATA
26888656 AAAAT
1 AAAAT
26888661 AATATAAGTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.22
14 7 0.39
15 7 0.39
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30
Consensus pattern (15 bp):
AAAATTATCATGATA
Found at i:26896285 original size:42 final size:42
Alignment explanation
Indices: 26896238--26896366 Score: 177
Period size: 42 Copynumber: 3.1 Consensus size: 42
26896228 CGTTTGTTTG
* * *
26896238 TGAGTGGACTAAAGGAGACTGAGAAGGTTCACATAGGTATGA
1 TGAGTGGACTAGAGGAGACTGAGAAGGTCCATATAGGTATGA
* * * *
26896280 TGAGTGAATTAGAGGAGAGTGAGAAGATCCATATAGGTATGA
1 TGAGTGGACTAGAGGAGACTGAGAAGGTCCATATAGGTATGA
* *
26896322 TAAGTGGACTAGAGGAGGCTGAGAAGGTCCATATAGGTATGA
1 TGAGTGGACTAGAGGAGACTGAGAAGGTCCATATAGGTATGA
26896364 TGA
1 TGA
26896367 ATAGGTACAT
Statistics
Matches: 73, Mismatches: 14, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
42 73 1.00
ACGTcount: A:0.36, C:0.08, G:0.34, T:0.22
Consensus pattern (42 bp):
TGAGTGGACTAGAGGAGACTGAGAAGGTCCATATAGGTATGA
Found at i:26896709 original size:31 final size:31
Alignment explanation
Indices: 26896669--26896752 Score: 98
Period size: 31 Copynumber: 2.7 Consensus size: 31
26896659 GTTTTTTGGC
* *
26896669 CTAACAAGTGGTATCAGAGCTGTAATGATCT
1 CTAACAAGTGGTATCAGAGCTATAATAATCT
* **
26896700 -TCAACAAGTGGTATAAGAGCTATGGTAATCT
1 CT-AACAAGTGGTATCAGAGCTATAATAATCT
*
26896731 CTAACAAATGGTATCAGAGCTA
1 CTAACAAGTGGTATCAGAGCTA
26896753 AAGGTTTGAG
Statistics
Matches: 44, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
30 1 0.02
31 42 0.95
32 1 0.02
ACGTcount: A:0.36, C:0.15, G:0.21, T:0.27
Consensus pattern (31 bp):
CTAACAAGTGGTATCAGAGCTATAATAATCT
Found at i:26898673 original size:51 final size:51
Alignment explanation
Indices: 26898618--26898725 Score: 137
Period size: 52 Copynumber: 2.1 Consensus size: 51
26898608 TTTGGGGATG
*
26898618 GTTGAA-TTTTTCGACACCAAAATCTGAAAAAGTTTGAATTTTTCGATGACC
1 GTTGAATTTTTTCGACACCAAAATCTGAAAAACTTTGAATTTTTCGATG-CC
* * *** *
26898669 GTTGAATTTTTTGGCCACCAAAATCTGGGGAACTTTGAATTTTTTGATGCC
1 GTTGAATTTTTTCGACACCAAAATCTGAAAAACTTTGAATTTTTCGATGCC
26898720 GTTGAA
1 GTTGAA
26898726 GTTTCTGACC
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
51 14 0.29
52 35 0.71
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (51 bp):
GTTGAATTTTTTCGACACCAAAATCTGAAAAACTTTGAATTTTTCGATGCC
Found at i:26899024 original size:12 final size:13
Alignment explanation
Indices: 26898971--26899029 Score: 75
Period size: 13 Copynumber: 4.6 Consensus size: 13
26898961 TTTTTCCTTT
* *
26898971 TTTTTTCTTTTTA
1 TTTTTTATTTTGA
*
26898984 TTTTTTGTTTTGA
1 TTTTTTATTTTGA
26898997 TTTTTTATTTTGA
1 TTTTTTATTTTGA
*
26899010 TTTTTTATATT-A
1 TTTTTTATTTTGA
26899022 TTTTTTAT
1 TTTTTTAT
26899030 GATGTTATTA
Statistics
Matches: 42, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
12 9 0.21
13 33 0.79
ACGTcount: A:0.14, C:0.02, G:0.05, T:0.80
Consensus pattern (13 bp):
TTTTTTATTTTGA
Found at i:26899107 original size:24 final size:24
Alignment explanation
Indices: 26899080--26899130 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 24
26899070 TTTTTAGAAA
26899080 AAAAAATAAATAAAT-AAATAAAAT
1 AAAAAATAAA-AAATGAAATAAAAT
* *
26899104 AAAAAATGAAAACTGAAATAAAAT
1 AAAAAATAAAAAATGAAATAAAAT
26899128 AAA
1 AAA
26899131 GACCTAAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 3 0.12
24 21 0.88
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (24 bp):
AAAAAATAAAAAATGAAATAAAAT
Found at i:26899288 original size:20 final size:19
Alignment explanation
Indices: 26899263--26899303 Score: 64
Period size: 19 Copynumber: 2.1 Consensus size: 19
26899253 TTTCCTCAAA
26899263 AATAAAAAAATATAAAAAAT
1 AATAAAAAAAT-TAAAAAAT
*
26899283 AATAAATAAATTAAAAAAT
1 AATAAAAAAATTAAAAAAT
26899302 AA
1 AA
26899304 ATTTTTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
19 10 0.50
20 10 0.50
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (19 bp):
AATAAAAAAATTAAAAAAT
Found at i:26911266 original size:17 final size:17
Alignment explanation
Indices: 26911244--26911276 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
26911234 AGATGGTCTC
26911244 TTCATTTGCATAATGAG
1 TTCATTTGCATAATGAG
*
26911261 TTCATTTGCATCATGA
1 TTCATTTGCATAATGA
26911277 TCATCATTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.27, C:0.15, G:0.15, T:0.42
Consensus pattern (17 bp):
TTCATTTGCATAATGAG
Found at i:26911551 original size:39 final size:40
Alignment explanation
Indices: 26911450--26912319 Score: 287
Period size: 39 Copynumber: 22.5 Consensus size: 40
26911440 TACCTCTCAG
* * * *
26911450 CTTTTGACATTTAAAGTTTGTTACCTCTGGTCAGAGGAGC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* *
26911490 TTTTTGAAATTTAAAGTTTGTTGCCTCTGGTTAGAGAAAC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* * * * * * * *
26911530 CTTTT--AATATTGAAGTTTGTTGCATTTAGTTAAAG-GAG
1 CTTTTGAAAT-TTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* * * * * *
26911568 CTTTTGGAATTTAAACTTTGTTGCCTTTGGTTAAATG-AGC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGA-GAAAC
* * * * * *
26911608 TTTTTAAAATTTAAAATTTGTTGCCTTTGGTTA-AGGAAGC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGA-GAAAC
* * * *
26911648 CTTTTG-AATTTAAAGTTAGTTGCCTCTAGTCAGAG-GAG
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* * * *
26911686 CATTTCAACATTTAAAGTTTGTTACCT-T--T--G-G---G
1 CTTTTGAA-ATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* * * * *
26911718 CTTTTCAACATTTAAAGTTTGTTGCCTTTGGTTAAATG-AGC
1 CTTTTGAA-ATTTAAAGTTTGTTGCCTCTGGTCAGA-GAAAC
* * * * *
26911759 TTTTTG-AATTTAAAGTTCGTTGCCTTTGGTCAGAG-GAG
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* * * * * * *
26911797 CTTTTTAATATTTAAAATTTGTTGCCTTTGGTTAAAGGAGC
1 CTTTTGAA-ATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* * * * * *
26911838 TTTTTG-GATTTAAAGTTCGTTGCCTCTGGCCAGAGGAGC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* * * *
26911877 C-TTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAATG-AGC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGA-GAAAC
* * * *
26911916 C-------ATTTAAAGTTCGTTGCCTCTAGTCAGAGGAGC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* * * * * *
26911949 CTTTT-AATATTTAAAGTTTGTTGTCTTTGGTTAAAG-GAG
1 CTTTTGAA-ATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* * * *
26911988 CTTTTGAAATTTAAAGTTTGTTACCT-TCGGTTA-AAAAAG
1 CTTTTGAAATTTAAAGTTTGTTGCCTCT-GGTCAGAGAAAC
* * * * * * *
26912027 CTTTTTAGATCTAAAGTTCGTTGCCTCTGGTTAGAGGAGC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* * * *
26912067 C-TTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAG-GAC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* * * *
26912105 CTTTT-AATATTTAAAGTTTGTTGCCTTTGGTTAAATG-AGC
1 CTTTTGAA-ATTTAAAGTTTGTTGCCTCTGGTCAGA-GAAAC
* * * * *
26912145 TTTTTG-GATTTAAAGTTTGTTGCCTTTGGTTAGATG-AGC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGA-GAAAC
* * * * * * *
26912184 C-TTTGAAATTTAAAGGTTGTTACCTTTGGTTAAAGGAGC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* * * * * * *
26912223 TTTTTG-GATTTAAAGTTCGTTACCTCTGATGAGAGAAGC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
* ** * *
26912262 CTTTTG-AATTTAAAGGTTGTTGCCTCTGGTGTGAGGAGC
1 CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
*
26912301 CTTTT-AAATTTAAAATTTG
1 CTTTTGAAATTTAAAGTTTG
26912320 CATAACCTCT
Statistics
Matches: 646, Mismatches: 141, Indels: 87
0.74 0.16 0.10
Matches are distributed among these distances:
32 27 0.04
33 27 0.04
34 1 0.00
35 2 0.00
37 1 0.00
38 33 0.05
39 388 0.60
40 159 0.25
41 8 0.01
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (40 bp):
CTTTTGAAATTTAAAGTTTGTTGCCTCTGGTCAGAGAAAC
Found at i:26911729 original size:32 final size:32
Alignment explanation
Indices: 26911688--26911748 Score: 113
Period size: 32 Copynumber: 1.9 Consensus size: 32
26911678 CAGAGGAGCA
26911688 TTTCAACATTTAAAGTTTGTTACCTTTGGGCT
1 TTTCAACATTTAAAGTTTGTTACCTTTGGGCT
*
26911720 TTTCAACATTTAAAGTTTGTTGCCTTTGG
1 TTTCAACATTTAAAGTTTGTTACCTTTGG
26911749 TTAAATGAGC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 28 1.00
ACGTcount: A:0.21, C:0.15, G:0.16, T:0.48
Consensus pattern (32 bp):
TTTCAACATTTAAAGTTTGTTACCTTTGGGCT
Found at i:26911764 original size:111 final size:111
Alignment explanation
Indices: 26911606--26911827 Score: 311
Period size: 111 Copynumber: 2.0 Consensus size: 111
26911596 GGTTAAATGA
*
26911606 GCTTTTTAAAATTTAAAATTTGTTGCCTTTGGTTAAGGAAGCCTTTTGAATTTAAAGTTAGTTGC
1 GCTTTTCAAAATTTAAAATTTGTTGCCTTTGGTTAAGGAAGCCTTTTGAATTTAAAGTTAGTTGC
*
26911671 CTCTAGTCAGAGGAGCATTTCAACATTTAAAGTTTGTTACCTTTGG
66 CTCTAGTCAGAGGAGCATTTCAACATTTAAAATTTGTTACCTTTGG
* * * * *
26911717 GCTTTTCAACATTTAAAGTTTGTTGCCTTTGGTTAAATG-AGCTTTTTGAATTTAAAGTTCGTTG
1 GCTTTTCAAAATTTAAAATTTGTTGCCTTTGGTT-AAGGAAGCCTTTTGAATTTAAAGTTAGTTG
* * * * * *
26911781 CCTTTGGTCAGAGGAGCTTTTTAATATTTAAAATTTGTTGCCTTTGG
65 CCTCTAGTCAGAGGAGCATTTCAACATTTAAAATTTGTTACCTTTGG
26911828 TTAAAGGAGC
Statistics
Matches: 97, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
111 94 0.97
112 3 0.03
ACGTcount: A:0.25, C:0.12, G:0.19, T:0.44
Consensus pattern (111 bp):
GCTTTTCAAAATTTAAAATTTGTTGCCTTTGGTTAAGGAAGCCTTTTGAATTTAAAGTTAGTTGC
CTCTAGTCAGAGGAGCATTTCAACATTTAAAATTTGTTACCTTTGG
Found at i:26911788 original size:190 final size:187
Alignment explanation
Indices: 26911450--26912286 Score: 813
Period size: 190 Copynumber: 4.3 Consensus size: 187
26911440 TACCTCTCAG
* * *
26911450 CTTTTGACATTTAAAGTTTGTTACCTCTGGTCAGAGGAGCTTTTTGAAATTTAAAGTTTGTTGCC
1 CTTTTGA-ATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGC-CTTTGAAATTTAAAGTTTGTTG-C
* * * * *
26911515 TCTGGTTAGAGAAACCTTTTAATA-TTGAAGTTTGTTGCATTTAGTTAAAGGAGCTTTTGGAATT
63 -CT--TT-G-G---GCTTTTAACATTTAAAGTTTGTTGCCTTTAGTTAAAGGAGCTTTTTGAATT
* * *
26911579 TAAACTTTGTTGCCTTTGGTTAAATGAGCTTTTTAAAATTTAAAATTTGTTGCCTTTGGTT-AAG
120 TAAAGTTTGTTGCCTTTGGTTAAAGGAGC-TTTTAAAATTTAAAATTTGTTACCTTTGGTTAAAG
26911643 GAAGC
184 G-AGC
* * * * *
26911648 CTTTTGAATTTAAAGTTAGTTGCCTCTAGTCAGAGGAGCATTTCAACATTTAAAGTTTGTTACCT
1 CTTTTGAATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCCTTTGAA-ATTTAAAGTTTGTTGCCT
* * *
26911713 TTGGGCTTTTCAACATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCTTTTTGAATTTAAAGTTCG
65 TTGGGCTTTT-AACATTTAAAGTTTGTTGCCTTTAGTTAAAGGAGCTTTTTGAATTTAAAGTTTG
* * * *
26911778 TTGCCTTTGGTCAGAGGAGCTTTTTAATATTTAAAATTTGTTGCCTTTGGTTAAAGGAGC
129 TTGCCTTTGGTTAAAGGAGC-TTTTAAAATTTAAAATTTGTTACCTTTGGTTAAAGGAGC
* * *
26911838 TTTTTGGATTTAAAGTTCGTTGCCTCTGGCCAGAGGAGCCTTTGAAATTTAAAGTTTGTTGCCTT
1 CTTTTGAATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCCTTTGAAATTTAAAGTTTGTTGCCTT
* * * * * * * *
26911903 T-GG-TTAAATGAGCCATTTAAAGTTCGTTGCCTCTAGTCAGAGGAGCCTTTTAATATTTAAAGT
66 TGGGCTT---TTA-ACATTTAAAGTTTGTTGCCTTTAGTTAAAGGAGCTTTTTGA-ATTTAAAGT
* * * * **
26911966 TTGTTGTCTTTGGTTAAAGGAGCTTTTGAAATTTAAAGTTTGTTACCTTCGGTTAAAAAAG-
126 TTGTTGCCTTTGGTTAAAGGAGCTTTTAAAATTTAAAATTTGTTACCTTTGGTTAAAGGAGC
* * *
26912027 CTTTTTAGATCTAAAGTTCGTTGCCTCTGGTTAGAGGAGCCTTTGAAATTTAAAGTTTGTTGCCT
1 CTTTTGA-ATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCCTTTGAAATTTAAAGTTTGTTGCCT
* * * *
26912092 TTGGTTAAAGGACCTTTTAATATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCTTTTTGGATTTA
65 TT-G-----GG--CTTTTAACATTTAAAGTTTGTTGCCTTTAGTTAAAGGAGCTTTTTGAATTTA
* * * * **
26912157 AAGTTTGTTGCCTTTGGTTAGATGAGCCTTTGAAATTTAAAGGTTGTTACCTTTGGTTAAAGGAG
122 AAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTAAAATTTAAAATTTGTTACCTTTGGTTAAAGGAG
26912222 C
187 C
* * * * * * *
26912223 TTTTTGGATTTAAAGTTCGTTACCTCTGATGAGAGAAGCCTTTTG-AATTTAAAGGTTGTTGCCT
1 CTTTTGAATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCC-TTTGAAATTTAAAGTTTGTTGCCT
26912287 CTGGTGTGAG
Statistics
Matches: 534, Mismatches: 83, Indels: 47
0.80 0.12 0.07
Matches are distributed among these distances:
187 2 0.00
188 7 0.01
189 27 0.05
190 252 0.47
191 33 0.06
192 1 0.00
193 2 0.00
195 110 0.21
196 44 0.08
197 47 0.09
198 7 0.01
200 2 0.00
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (187 bp):
CTTTTGAATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCCTTTGAAATTTAAAGTTTGTTGCCTT
TGGGCTTTTAACATTTAAAGTTTGTTGCCTTTAGTTAAAGGAGCTTTTTGAATTTAAAGTTTGTT
GCCTTTGGTTAAAGGAGCTTTTAAAATTTAAAATTTGTTACCTTTGGTTAAAGGAGC
Found at i:26911949 original size:33 final size:33
Alignment explanation
Indices: 26911845--26911955 Score: 96
Period size: 33 Copynumber: 3.2 Consensus size: 33
26911835 AGCTTTTTGG
*
26911845 ATTTAAAGTTCGTTGCCTCTGGCCAGAGGAGCC
1 ATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCC
* * * * *
26911878 TTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCC
1 ------ATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCC
*
26911917 ATTTAAAGTTCGTTGCCTCTAGTCAGAGGAGCC
1 ATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCC
*
26911950 TTTTAA
1 ATTTAA
26911956 TATTTAAAGT
Statistics
Matches: 59, Mismatches: 13, Indels: 6
0.76 0.17 0.08
Matches are distributed among these distances:
33 32 0.54
39 27 0.46
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (33 bp):
ATTTAAAGTTCGTTGCCTCTGGTCAGAGGAGCC
Found at i:26912078 original size:78 final size:77
Alignment explanation
Indices: 26911727--26912319 Score: 367
Period size: 78 Copynumber: 7.6 Consensus size: 77
26911717 GCTTTTCAAC
* * * * *
26911727 ATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCTTTTTG-AATTTAAAGTTCGTTGCCTTTGGTCA
1 ATTTAAAG-TTGTTGCCTTTGGTTAAAGGAGC-TTTTGAAATTTAAAGTTTGTTACCTTCGGTTA
* * * *
26911791 GAGGAGCTTTTTAAT
64 AAGAAGCCTTTT-AG
* * * * **
26911806 ATTTAAAATTTGTTGCCTTTGGTTAAAGGAGCTTTTTG-GATTTAAAGTTCGTTGCC-TCTGGCC
1 ATTT-AAAGTTGTTGCCTTTGGTTAAAGGAGC-TTTTGAAATTTAAAGTTTGTTACCTTC-GGTT
* * * *
26911869 AGAGGAGCCTTTGAA
63 AAAGAAGCCTTTTAG
* * * * * *
26911884 ATTTAAAGTTTGTTGCCTTTGGTTAAATGAGC------CATTTAAAGTTCGTTGCC-TCTAGTCA
1 ATTTAAAG-TTGTTGCCTTTGGTTAAAGGAGCTTTTGAAATTTAAAGTTTGTTACCTTC-GGTTA
* * *
26911942 GAGGAGCCTTTTAAT
64 AAGAAGCCTTTT-AG
*
26911957 ATTTAAAGTTTGTTGTCTTTGGTTAAAGGAGCTTTTGAAATTTAAAGTTTGTTACCTTCGGTTAA
1 ATTTAAAG-TTGTTGCCTTTGGTTAAAGGAGCTTTTGAAATTTAAAGTTTGTTACCTTCGGTTAA
* *
26912022 AAAAGCTTTTTAG
65 AGAAGCCTTTTAG
* * * * * *
26912035 ATCTAAAGTTCGTTGCCTCTGGTTAGAGGAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAA
1 ATTTAAAGTT-GTTGCCTTTGGTTAAAGGAGCTTTTGAAATTTAAAGTTTGTTACCTTCGGTTAA
* *
26912100 AGGA-CCTTTTAAT
65 AGAAGCCTTTT-AG
* * * *
26912113 ATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCTTTTTG-GATTTAAAGTTTGTTGCCTTTGGTTA
1 ATTTAAAG-TTGTTGCCTTTGGTTAAAGGAGC-TTTTGAAATTTAAAGTTTGTTACCTTCGGTTA
* * *
26912177 GATG-AGCCTTTGAA
64 -AAGAAGCCTTTTAG
* * * * *
26912191 ATTTAAAGGTTGTTACCTTTGGTTAAAGGAGCTTTTTG-GATTTAAAGTTCGTTACC-TCTGATG
1 ATTTAAA-GTTGTTGCCTTTGGTTAAAGGAGC-TTTTGAAATTTAAAGTTTGTTACCTTC-GGTT
*
26912254 AGAGAAGCCTTTT-G
63 AAAGAAGCCTTTTAG
* * *
26912268 AATTTAAAGGTTGTTGCCTCTGGTGT-GAGGAGCCTTTT-AAATTTAAAATTTG
1 -ATTTAAA-GTTGTTGCCTTTGGT-TAAAGGAG-CTTTTGAAATTTAAAGTTTG
26912320 CATAACCTCT
Statistics
Matches: 426, Mismatches: 64, Indels: 49
0.79 0.12 0.09
Matches are distributed among these distances:
72 34 0.08
73 31 0.07
77 12 0.03
78 239 0.56
79 105 0.25
80 5 0.01
ACGTcount: A:0.24, C:0.11, G:0.22, T:0.42
Consensus pattern (77 bp):
ATTTAAAGTTGTTGCCTTTGGTTAAAGGAGCTTTTGAAATTTAAAGTTTGTTACCTTCGGTTAAA
GAAGCCTTTTAG
Found at i:26912103 original size:117 final size:116
Alignment explanation
Indices: 26911458--26912319 Score: 663
Period size: 117 Copynumber: 7.4 Consensus size: 116
26911448 AGCTTTTGAC
* * * * *
26911458 ATTTAAAGTTTGTTACCTCTGGTCAGAGGAGCTTTTTGAAATTTAAAGTTTGTTGCCTCTGGTTA
1 ATTTAAAGTTCGTTGCCTCTGGTTAGAGGAGC-CTTTGAAATTTAAAGTTTGTTGCCTTTGGTTA
* * * * * * *
26911523 GAGAAACCTTTT--AATATTGAAGTTTGTTGCATTTAGTTAAAGGAGCTTTTGG
65 AAG-GAGCTTTTGAAAT-TTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTG
* * * * * * * *
26911575 AATTTAAACTTTGTTGCCTTTGGTTAAATGAGCTTTTTAAAATTTAAAATTTGTTGCCTTTGGTT
1 -ATTTAAAGTTCGTTGCCTCTGGTTAGAGGAGC-CTTTGAAATTTAAAGTTTGTTGCCTTTGGTT
* * * * * ***
26911640 -AAGGAAGCCTTTTG-AATTTAAAGTTAGTTGCCTCTAGTCAGAGGAGCATTTCAAC
64 AAAGG-AG-CTTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGC-TTT-TTG
* * * *
26911695 ATTTAAAGTTTGTT-AC-CT--TT---GG-GCTTTTCAACATTTAAAGTTTGTTGCCTTTGGTTA
1 ATTTAAAGTTCGTTGCCTCTGGTTAGAGGAGCCTTTGAA-ATTTAAAGTTTGTTGCCTTTGGTTA
* * * * *
26911752 AATGAGCTTTTTG-AATTTAAAGTTCGTTGCCTTTGGTCAGAGGAGCTTTTTAAT
65 AAGGAGC-TTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTT--G
* * * * * * * * **
26911806 ATTTAAAATTTGTTGCCTTTGGTTAAAGGAGCTTTTTG-GATTTAAAGTTCGTTGCCTCTGGCCA
1 ATTTAAAGTTCGTTGCCTCTGGTTAGAGGAGC-CTTTGAAATTTAAAGTTTGTTGCCTTTGGTTA
* * * *
26911870 GAGGAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAATGAGC-----C
65 AAGGAGCTTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTG
* * * *
26911917 ATTTAAAGTTCGTTGCCTCTAGTCAGAGGAGCCTTTTAATATTTAAAGTTTGTTGTCTTTGGTTA
1 ATTTAAAGTTCGTTGCCTCTGGTTAGAGGAGCCTTTGAA-ATTTAAAGTTTGTTGCCTTTGGTTA
* * **
26911982 AAGGAGCTTTTGAAATTTAAAGTTTGTTACCTTCGGTTAAAAAAGCTTTTTAG
65 AAGGAGCTTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTT-G
*
26912035 ATCTAAAGTTCGTTGCCTCTGGTTAGAGGAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAA
1 ATTTAAAGTTCGTTGCCTCTGGTTAGAGGAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAA
* *
26912100 AGGACCTTTT-AATATTTAAAGTTTGTTGCCTTTGGTTAAATGAGCTTTTTGG
66 AGGAGCTTTTGAA-ATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTT-G
* * * * *
26912152 ATTTAAAGTTTGTTGCCTTTGGTTAGATGAGCCTTTGAAATTTAAAGGTTGTTACCTTTGGTTAA
1 ATTTAAAGTTCGTTGCCTCTGGTTAGAGGAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAA
* * * * * * * * *
26912217 AGGAGCTTTTTG-GATTTAAAGTTCGTTACCTCTGATGAGAGAAGCCTTTTG
66 AGGAGC-TTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTG
* *
26912268 AATTTAAAGGTT-GTTGCCTCTGGTGT-GAGGAGCCTTTTAAATTTAAAATTTG
1 -ATTTAAA-GTTCGTTGCCTCTGGT-TAGAGGAGCCTTTGAAATTTAAAGTTTG
26912320 CATAACCTCT
Statistics
Matches: 605, Mismatches: 105, Indels: 69
0.78 0.13 0.09
Matches are distributed among these distances:
110 13 0.02
111 101 0.17
112 65 0.11
113 1 0.00
115 4 0.01
116 3 0.00
117 208 0.34
118 185 0.31
119 21 0.03
120 4 0.01
ACGTcount: A:0.25, C:0.12, G:0.21, T:0.42
Consensus pattern (116 bp):
ATTTAAAGTTCGTTGCCTCTGGTTAGAGGAGCCTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAA
AGGAGCTTTTGAAATTTAAAGTTTGTTGCCTTTGGTTAAAGGAGCTTTTTG
Found at i:26913375 original size:21 final size:22
Alignment explanation
Indices: 26913351--26913393 Score: 54
Period size: 21 Copynumber: 2.0 Consensus size: 22
26913341 TTTATTTTTC
26913351 GTTTTGATTT-TGATTTT-TTAT
1 GTTTT-ATTTATGATTTTATTAT
*
26913372 GTTTTTTTTATGATTTTATTAT
1 GTTTTATTTATGATTTTATTAT
26913394 TATTGTTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 3 0.16
21 12 0.63
22 4 0.21
ACGTcount: A:0.16, C:0.00, G:0.12, T:0.72
Consensus pattern (22 bp):
GTTTTATTTATGATTTTATTAT
Found at i:26913393 original size:3 final size:3
Alignment explanation
Indices: 26913387--26913423 Score: 51
Period size: 3 Copynumber: 13.0 Consensus size: 3
26913377 TTTTATGATT
*
26913387 TTA TTA TTA TTG TTA TTA TTA TTA TT- TTA -TA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26913424 CTAGCAATAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
2 4 0.13
3 26 0.87
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26913453 original size:4 final size:4
Alignment explanation
Indices: 26913444--26913488 Score: 56
Period size: 4 Copynumber: 10.8 Consensus size: 4
26913434 TTTTTTAGAA
26913444 AAAT AAAT AAAT AAAT AAAT AGAAT AAA- AAAT GAAAT AAAAT AAA
1 AAAT AAAT AAAT AAAT AAAT A-AAT AAAT AAAT -AAAT -AAAT AAA
26913489 GACCTAAAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
3 3 0.08
4 22 0.59
5 12 0.32
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (4 bp):
AAAT
Found at i:26913471 original size:17 final size:16
Alignment explanation
Indices: 26913444--26913488 Score: 56
Period size: 17 Copynumber: 2.7 Consensus size: 16
26913434 TTTTTTAGAA
26913444 AAATAAATAAATAAAT-
1 AAATAAATAAA-AAATG
26913460 AAATAGAATAAAAAATG
1 AAATA-AATAAAAAATG
26913477 AAATAAAATAAA
1 AAAT-AAATAAA
26913489 GACCTAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
16 9 0.35
17 16 0.62
18 1 0.04
ACGTcount: A:0.76, C:0.00, G:0.04, T:0.20
Consensus pattern (16 bp):
AAATAAATAAAAAATG
Found at i:26913646 original size:21 final size:19
Alignment explanation
Indices: 26913620--26913661 Score: 57
Period size: 21 Copynumber: 2.1 Consensus size: 19
26913610 TTTGCTCAAA
26913620 AATAAAAAAAATATAAATAAT
1 AATAAAAAAAATA-AAA-AAT
*
26913641 AATAAATAAAATAAAAAAT
1 AATAAAAAAAATAAAAAAT
26913660 AA
1 AA
26913662 ATTATTTAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 5 0.25
20 3 0.15
21 12 0.60
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (19 bp):
AATAAAAAAAATAAAAAAT
Found at i:26916730 original size:22 final size:21
Alignment explanation
Indices: 26916686--26916734 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
26916676 GATTAAATCT
**
26916686 TTAAATATATATTTTTATTAA
1 TTAAATATATATTTTTACAAA
*
26916707 TTAAATATCTATTTTTAACAAA
1 TTAAATATATATTTTT-ACAAA
26916729 TTAAAT
1 TTAAAT
26916735 CATCAAATGG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
21 15 0.62
22 9 0.38
ACGTcount: A:0.45, C:0.04, G:0.00, T:0.51
Consensus pattern (21 bp):
TTAAATATATATTTTTACAAA
Found at i:26919479 original size:13 final size:13
Alignment explanation
Indices: 26919461--26919485 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
26919451 CAGAAGCAAA
26919461 AAAAAAAAAAGAT
1 AAAAAAAAAAGAT
26919474 AAAAAAAAAAGA
1 AAAAAAAAAAGA
26919486 GGAAGATTCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.00, G:0.08, T:0.04
Consensus pattern (13 bp):
AAAAAAAAAAGAT
Found at i:26920213 original size:18 final size:19
Alignment explanation
Indices: 26920185--26920228 Score: 56
Period size: 18 Copynumber: 2.4 Consensus size: 19
26920175 AGGTAAAAAA
*
26920185 ATTTT-TTTTTTAAATCTT
1 ATTTTATTTTTTAAATATT
*
26920203 -TTTTATTTTTTATATATT
1 ATTTTATTTTTTAAATATT
26920221 ATTTTATT
1 ATTTTATT
26920229 AATATTTATG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
17 4 0.18
18 11 0.50
19 7 0.32
ACGTcount: A:0.23, C:0.02, G:0.00, T:0.75
Consensus pattern (19 bp):
ATTTTATTTTTTAAATATT
Found at i:26920367 original size:26 final size:27
Alignment explanation
Indices: 26920310--26920369 Score: 70
Period size: 26 Copynumber: 2.3 Consensus size: 27
26920300 GTAATTATGT
26920310 TAATAAACTTTAAAAATAATAATATAA
1 TAATAAACTTTAAAAATAATAATATAA
* * *
26920337 AAATAAA-TTTAATAATAATACT-TAA
1 TAATAAACTTTAAAAATAATAATATAA
26920362 GTAATAAA
1 -TAATAAA
26920370 AAATGAAAGA
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
25 3 0.11
26 19 0.68
27 6 0.21
ACGTcount: A:0.62, C:0.03, G:0.02, T:0.33
Consensus pattern (27 bp):
TAATAAACTTTAAAAATAATAATATAA
Found at i:26921176 original size:193 final size:193
Alignment explanation
Indices: 26920846--26921229 Score: 644
Period size: 193 Copynumber: 2.0 Consensus size: 193
26920836 GCATTGCATG
*
26920846 CATGACATTTTCTTACGAAAAATAAATTCGAACCTCCAAAGATGAGATTCTAAAAGTATTTCGAG
1 CATGACATTTTCTTACGAAAAATAAATTCGAACCTCCAAAGATGAGATTCTAAAAGTATTCCGAG
* * * **
26920911 TAGAGATACTTTAAGAAATCTTTAGGTGAGAAAGAGTTCTTTTAATGTTATTAACGTACTGAAAC
66 TAGAGATACTTTAAGAAATCTCTAAGTGAGAAAAAGTTCTTTTAATGTTACCAACGTACTGAAAC
*
26920976 ATTTTAAGAATTATTTCAATAAAAAAGTTTTAATTTATTTTTCTCGAGAATAAATTTTTTTTAA
131 ATTTTAAGAATTATTTCAATAAAAAAATTTTAATTTATTTTTCTCGAGAAT-AATTTTTTTTAA
* *
26921040 CATGACATTTTCTTACGAAAAATAAATTCGAGCCTCCAAA-ATTAGATTCTAAAAGTATTCCGAG
1 CATGACATTTTCTTACGAAAAATAAATTCGAACCTCCAAAGATGAGATTCTAAAAGTATTCCGAG
* *
26921104 TAGAGATGCTTTAAGAAATCTCTAAGTGAGAAAAAGTTCTTTTAATGTTACCAACGTACTGGAAC
66 TAGAGATACTTTAAGAAATCTCTAAGTGAGAAAAAGTTCTTTTAATGTTACCAACGTACTGAAAC
*
26921169 ATTTTAAGAATTATTTCAATAAAAAAATTTTAATTTATTTTTCTCGAGAATATTTTTTTTT
131 ATTTTAAGAATTATTTCAATAAAAAAATTTTAATTTATTTTTCTCGAGAATAATTTTTTTT
26921230 CTAATAACTA
Statistics
Matches: 178, Mismatches: 12, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
192 9 0.05
193 130 0.73
194 39 0.22
ACGTcount: A:0.38, C:0.11, G:0.12, T:0.38
Consensus pattern (193 bp):
CATGACATTTTCTTACGAAAAATAAATTCGAACCTCCAAAGATGAGATTCTAAAAGTATTCCGAG
TAGAGATACTTTAAGAAATCTCTAAGTGAGAAAAAGTTCTTTTAATGTTACCAACGTACTGAAAC
ATTTTAAGAATTATTTCAATAAAAAAATTTTAATTTATTTTTCTCGAGAATAATTTTTTTTAA
Found at i:26923002 original size:194 final size:195
Alignment explanation
Indices: 26922634--26923021 Score: 577
Period size: 194 Copynumber: 2.0 Consensus size: 195
26922624 TGCATTACAT
* * * *
26922634 ACATGACATAATTTTTTACGAAAAGTAAATTTAGACCTCCCAAAGATGAGATTTTAAAAGTATTC
1 ACATGACAT-ATTTCTTACGAAAAATAAATTGAGACCTCCCAAAGATGAGATTCTAAAAGTATTC
* * * * * * *
26922699 CGAGTAGAGATATTTTAAGAAATTTCTAGGTGAGAAAGAGTTTTTTTAATGTTACCAACATACTG
65 CGAGTAGAGATACTTTAAAAAATCTCTAGGTAAGAAAAAGTTCTTTTAATATTACCAACATACTG
26922764 GAACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTCTTAG-GAATAAATTTTTT
130 GAACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTT-TTAGAGAAT-AATTTTTT
26922828 TTA
193 TTA
*
26922831 ACATGACAT-TTTCTTACGAAAAATAAATTCGAG-CCT-CCAAAGATGAGATTCTAAAAGTATTT
1 ACATGACATATTTCTTACGAAAAATAAATT-GAGACCTCCCAAAGATGAGATTCTAAAAGTATTC
* *
26922893 CGAGTAGAGATGCTTTAAAAAATCTCTAGGTAAGAAAAAGTTCTTTTAATATTACCAACGTACTG
65 CGAGTAGAGATACTTTAAAAAATCTCTAGGTAAGAAAAAGTTCTTTTAATATTACCAACATACTG
*
26922958 GAACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTTTCGAGAATAATTTTTTT
130 GAACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTTTAGAGAATAATTTTTTT
26923022 CTAATAACTA
Statistics
Matches: 174, Mismatches: 15, Indels: 8
0.88 0.08 0.04
Matches are distributed among these distances:
193 12 0.07
194 130 0.75
195 21 0.12
196 2 0.01
197 9 0.05
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.38
Consensus pattern (195 bp):
ACATGACATATTTCTTACGAAAAATAAATTGAGACCTCCCAAAGATGAGATTCTAAAAGTATTCC
GAGTAGAGATACTTTAAAAAATCTCTAGGTAAGAAAAAGTTCTTTTAATATTACCAACATACTGG
AACATTTTAAGAATTATTTCAATAAAAAGGTTTTAATTTATTTTTTTAGAGAATAATTTTTTTTA
Found at i:26923909 original size:38 final size:36
Alignment explanation
Indices: 26923865--26923942 Score: 104
Period size: 38 Copynumber: 2.1 Consensus size: 36
26923855 TTAAAATTTC
*
26923865 ATAATTTT-TAATATCAAAAAATAAAAAAGTTATCAAAA
1 ATAATTTTAAAATAT-AAAAAAT-AAAAA-TTATCAAAA
*
26923903 ATAATTTTAAAATATAAAAAATAAAAATTTTCAAAA
1 ATAATTTTAAAATATAAAAAATAAAAATTATCAAAA
26923939 ATAA
1 ATAA
26923943 AAAATAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
36 12 0.32
37 5 0.14
38 15 0.41
39 5 0.14
ACGTcount: A:0.63, C:0.04, G:0.01, T:0.32
Consensus pattern (36 bp):
ATAATTTTAAAATATAAAAAATAAAAATTATCAAAA
Found at i:26923931 original size:23 final size:22
Alignment explanation
Indices: 26923905--26923957 Score: 79
Period size: 23 Copynumber: 2.3 Consensus size: 22
26923895 TATCAAAAAT
26923905 AATTTTAAAATATAAAAAATAAA
1 AATTTTAAAA-ATAAAAAATAAA
26923928 AATTTTCAAAAATAAAAAATAAA
1 AATTTT-AAAAATAAAAAATAAA
*
26923951 AAATTTA
1 AATTTTA
26923958 TATAATTTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 1 0.04
23 23 0.82
24 4 0.14
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (22 bp):
AATTTTAAAAATAAAAAATAAA
Found at i:26926019 original size:13 final size:13
Alignment explanation
Indices: 26926001--26926033 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
26925991 TTAATTTATA
*
26926001 TAATAAAAAATTT
1 TAATAAAAAACTT
26926014 TAAT-AAAAACTT
1 TAATAAAAAACTT
26926026 TAATAAAA
1 TAATAAAA
26926034 TTTAATAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (13 bp):
TAATAAAAAACTT
Found at i:26926172 original size:2 final size:2
Alignment explanation
Indices: 26926167--26926196 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
26926157 TATAATTCAC
*
26926167 AT AT AT AT AT AA AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
26926197 GAATTCAGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:26927531 original size:2 final size:2
Alignment explanation
Indices: 26927526--26927552 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
26927516 GATAGAGAGA
26927526 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
26927553 AAATTTTTAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:26929202 original size:27 final size:27
Alignment explanation
Indices: 26929140--26929203 Score: 69
Period size: 28 Copynumber: 2.3 Consensus size: 27
26929130 AATAAGTATT
*
26929140 TTTAAAATATATATAAAAGAAATCTAAA
1 TTTAAAATAAATATAAAAGAAA-CTAAA
26929168 TTTAAAAATAAAT-TAAAAGAAGA-TAAA
1 TTT-AAAATAAATATAAAAGAA-ACTAAA
26929195 TGTTAAAAT
1 T-TTAAAAT
26929204 TTAAATTTCG
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
27 10 0.31
28 13 0.41
29 9 0.28
ACGTcount: A:0.61, C:0.02, G:0.06, T:0.31
Consensus pattern (27 bp):
TTTAAAATAAATATAAAAGAAACTAAA
Found at i:26933913 original size:10 final size:11
Alignment explanation
Indices: 26933896--26933921 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
26933886 TTAAAATTTT
26933896 ATTTTTTTGAA
1 ATTTTTTTGAA
26933907 ATTTTTTTGAA
1 ATTTTTTTGAA
26933918 ATTT
1 ATTT
26933922 AAAAAATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.08, T:0.65
Consensus pattern (11 bp):
ATTTTTTTGAA
Found at i:26934135 original size:35 final size:35
Alignment explanation
Indices: 26934096--26934167 Score: 94
Period size: 35 Copynumber: 2.1 Consensus size: 35
26934086 TAACTAATTT
26934096 AAATAATAAAAAAATC-AAACCAAAGAAG-AAAAGAA
1 AAATAA-AAAAAAATCAAAACCAAA-AAGTAAAAGAA
* *
26934131 AAATAAAAGAAAATCAAAATCAAAAAGTAAAAGAA
1 AAATAAAAAAAAATCAAAACCAAAAAGTAAAAGAA
26934166 AA
1 AA
26934168 TGAAAAACAG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 11 0.33
35 22 0.67
ACGTcount: A:0.75, C:0.07, G:0.08, T:0.10
Consensus pattern (35 bp):
AAATAAAAAAAAATCAAAACCAAAAAGTAAAAGAA
Found at i:26935621 original size:43 final size:43
Alignment explanation
Indices: 26935440--26935647 Score: 124
Period size: 43 Copynumber: 4.8 Consensus size: 43
26935430 AAGATATATT
* * * * *
26935440 TATACAAAAACTAAACAACTTTAAATTAAGAAAT-AGACTCCTC
1 TATATAAAAGCTAAACAAATTTAAATTAAGAAATGA-ATTTCTC
* * ** * * *
26935483 TATACAAAGGCTCATAA-AAA-TTAAAAAAAAAAATGGATTTCCC
1 TATATAAAAGCT-A-AACAAATTTAAATTAAGAAATGAATTTCTC
* * *
26935526 T-TAATACAGAAGCTAAATAATTTTAAATTAAGAAATTAACTCTT-T-
1 TAT-ATA-A-AAGCTAAACAAATTTAAATTAAGAAATGAA-T-TTCTC
*
26935571 TAAATAAAAGCTAAACAAATTTAAATTAAGAAATGAATTTCTC
1 TATATAAAAGCTAAACAAATTTAAATTAAGAAATGAATTTCTC
** *
26935614 TATATAAAAATTAAACAACTTTAAA-TAAGAAATG
1 TATATAAAAGCTAAACAAATTTAAATTAAGAAATG
26935648 TTAAAACCTT
Statistics
Matches: 125, Mismatches: 27, Indels: 27
0.70 0.15 0.15
Matches are distributed among these distances:
41 2 0.02
42 12 0.10
43 78 0.62
44 8 0.06
45 22 0.18
46 1 0.01
47 2 0.02
ACGTcount: A:0.52, C:0.12, G:0.07, T:0.29
Consensus pattern (43 bp):
TATATAAAAGCTAAACAAATTTAAATTAAGAAATGAATTTCTC
Found at i:26938246 original size:87 final size:83
Alignment explanation
Indices: 26938096--26938256 Score: 198
Period size: 87 Copynumber: 1.9 Consensus size: 83
26938086 TGGATTTCTT
*
26938096 TATACAAAAGCTTAAAAATCTAAAAAAAAAAAGATATATTTATACAAAAACTAAACAACTTTAAA
1 TATACAAAAGCTTAAAAATCTAAAAAAAAAAAGATATATTAATACAAAAACTAAACAACTTTAAA
26938161 TTAAGAAATAGACTCCTC
66 TTAAGAAATAGACTCCTC
* * * * * * *
26938179 TATACAAAGGCTCATAAAAAT-TAAAAAAAAAATAGATTTCCCTTAATACAGAAGCTAAATAATT
1 TATACAAAAGCT--TAAAAATCTAAAAAAAAAA-AGATAT--ATTAATACAAAAACTAAACAACT
26938243 TTAAATTAAGAAAT
61 TTAAATTAAGAAAT
26938257 TAACTCTTTT
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
83 11 0.17
84 11 0.17
85 12 0.18
87 31 0.48
ACGTcount: A:0.55, C:0.12, G:0.06, T:0.27
Consensus pattern (83 bp):
TATACAAAAGCTTAAAAATCTAAAAAAAAAAAGATATATTAATACAAAAACTAAACAACTTTAAA
TTAAGAAATAGACTCCTC
Found at i:26938324 original size:43 final size:43
Alignment explanation
Indices: 26938233--26938333 Score: 107
Period size: 43 Copynumber: 2.3 Consensus size: 43
26938223 AATACAGAAG
* * * *
26938233 CTAAATAATTTTAAATTAAGAAATTAACTCTTTTAAATAAAAG
1 CTAAACAAATTTAAATTAAGAAATGAACTCTTTTAAATAAAAA
*
26938276 CTAAACAAATTTAAATTAAGAAATGAA-T-TTCTCTATATAAAAA
1 CTAAACAAATTTAAATTAAGAAATGAACTCTT-T-TAAATAAAAA
* *
26938319 TTAAACAACTTTAAA
1 CTAAACAAATTTAAA
26938334 AACTTTAAAT
Statistics
Matches: 49, Mismatches: 7, Indels: 4
0.82 0.12 0.07
Matches are distributed among these distances:
41 2 0.04
42 2 0.04
43 45 0.92
ACGTcount: A:0.52, C:0.09, G:0.04, T:0.35
Consensus pattern (43 bp):
CTAAACAAATTTAAATTAAGAAATGAACTCTTTTAAATAAAAA
Found at i:26941362 original size:3 final size:3
Alignment explanation
Indices: 26941356--26941381 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
26941346 TTTTTTAAAG
26941356 TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TT
26941382 TGGACCTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:26942435 original size:18 final size:17
Alignment explanation
Indices: 26942412--26942446 Score: 61
Period size: 17 Copynumber: 2.0 Consensus size: 17
26942402 TTAAATTTGT
26942412 TGAAATATAAAATATTTA
1 TGAAATA-AAAATATTTA
26942430 TGAAATAAAAATATTTA
1 TGAAATAAAAATATTTA
26942447 AATTCAAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.57, C:0.00, G:0.06, T:0.37
Consensus pattern (17 bp):
TGAAATAAAAATATTTA
Found at i:26958804 original size:3 final size:3
Alignment explanation
Indices: 26958796--26958853 Score: 98
Period size: 3 Copynumber: 19.0 Consensus size: 3
26958786 TTACTATGTG
*
26958796 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
26958844 TTA TGTA TTA
1 TTA T-TA TTA
26958854 AAATTTAAAA
Statistics
Matches: 52, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
3 49 0.94
4 3 0.06
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:26963662 original size:34 final size:34
Alignment explanation
Indices: 26963617--26963682 Score: 123
Period size: 34 Copynumber: 1.9 Consensus size: 34
26963607 GAAATTTTCA
*
26963617 AAAGTTGTGGAGCCTCTACTTAGAAGAGCTTTTT
1 AAAGTTATGGAGCCTCTACTTAGAAGAGCTTTTT
26963651 AAAGTTATGGAGCCTCTACTTAGAAGAGCTTT
1 AAAGTTATGGAGCCTCTACTTAGAAGAGCTTT
26963683 CATTATCAAG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 31 1.00
ACGTcount: A:0.29, C:0.15, G:0.23, T:0.33
Consensus pattern (34 bp):
AAAGTTATGGAGCCTCTACTTAGAAGAGCTTTTT
Found at i:26963773 original size:43 final size:43
Alignment explanation
Indices: 26963725--26963861 Score: 168
Period size: 43 Copynumber: 3.2 Consensus size: 43
26963715 CTATTTTAAG
* * *
26963725 TTTTCAAAAGTTGTTGAGCCTCTGTTTAAAGGTGCTTTTAAAA
1 TTTTCAAAAGTTGTTGAGCCTTTGCTTAAAGGAGCTTTTAAAA
* * *
26963768 TTTTCAAAAGTTGTTGAGCTTTTGCTTAGAGGAACCTTTTAAAA
1 TTTTCAAAAGTTGTTGAGCCTTTGCTTAAAGG-AGCTTTTAAAA
* *
26963812 TTTTC-AAAGTTATTGAGCCTTTGCTTAAAAGAGCTTTTTAAAA
1 TTTTCAAAAGTTGTTGAGCCTTTGCTTAAAGGAGC-TTTTAAAA
*
26963855 TTGTCAA
1 TTTTCAA
26963862 GCCTCTACTT
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
42 2 0.03
43 62 0.78
44 15 0.19
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.42
Consensus pattern (43 bp):
TTTTCAAAAGTTGTTGAGCCTTTGCTTAAAGGAGCTTTTAAAA
Found at i:26963909 original size:43 final size:43
Alignment explanation
Indices: 26963858--26963952 Score: 140
Period size: 43 Copynumber: 2.2 Consensus size: 43
26963848 TTTAAAATTG
26963858 TCAAGCCTCTACTTAG-AGAAGCCTTT-TAAATTTTCAAAAGTTA
1 TCAAGCCTCTACTTAGAAG-AG-CTTTCTAAATTTTCAAAAGTTA
* *
26963901 TCGAGCCTCTACTTAGAAGAGCTTTCTAAATTTTCAAAAGTTG
1 TCAAGCCTCTACTTAGAAGAGCTTTCTAAATTTTCAAAAGTTA
26963944 TCAAGCCTC
1 TCAAGCCTC
26963953 ATTAAATATT
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
42 4 0.09
43 41 0.87
44 2 0.04
ACGTcount: A:0.32, C:0.21, G:0.14, T:0.34
Consensus pattern (43 bp):
TCAAGCCTCTACTTAGAAGAGCTTTCTAAATTTTCAAAAGTTA
Found at i:26967943 original size:3 final size:3
Alignment explanation
Indices: 26967935--26967975 Score: 82
Period size: 3 Copynumber: 13.7 Consensus size: 3
26967925 TTACTATGTG
26967935 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26967976 GTTAATTAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 38 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:26974835 original size:40 final size:40
Alignment explanation
Indices: 26974790--26974923 Score: 112
Period size: 40 Copynumber: 3.2 Consensus size: 40
26974780 CTTTCAAGCA
26974790 AGATTTGTAAATCTTCCGAGTTGAATATATTTTAAAGTTG
1 AGATTTGTAAATCTTCCGAGTTGAATATATTTTAAAGTTG
* ** * * * **
26974830 AGATTTGTAAGA-CCTCTAAGCAT-AATCTCCAAGTCTTTCAAG-CA
1 AGATTTGTAA-ATCTTCCGAG-TTGAATAT---A-T-TTTAAAGTTG
26974874 AGATTTGTAAATCTTCCGAGTTGAATATATTTTAAAGTTG
1 AGATTTGTAAATCTTCCGAGTTGAATATATTTTAAAGTTG
26974914 AGATTTGTAA
1 AGATTTGTAA
26974924 GACCTCTGGA
Statistics
Matches: 68, Mismatches: 16, Indels: 20
0.65 0.15 0.19
Matches are distributed among these distances:
39 6 0.09
40 30 0.44
41 3 0.04
43 3 0.04
44 20 0.29
45 6 0.09
ACGTcount: A:0.34, C:0.12, G:0.16, T:0.38
Consensus pattern (40 bp):
AGATTTGTAAATCTTCCGAGTTGAATATATTTTAAAGTTG
Found at i:26974864 original size:84 final size:84
Alignment explanation
Indices: 26974746--26974930 Score: 345
Period size: 84 Copynumber: 2.2 Consensus size: 84
26974736 TCTTAGAATC
* *
26974746 GAGATTTCTAAGA-CTTTAAGCATAATCTCCAAGTCTTTCAAGCAAGATTTGTAAATCTTCCGAG
1 GAGATTTGTAAGACCTCTAAGCATAATCTCCAAGTCTTTCAAGCAAGATTTGTAAATCTTCCGAG
26974810 TTGAATATATTTTAAAGTT
66 TTGAATATATTTTAAAGTT
26974829 GAGATTTGTAAGACCTCTAAGCATAATCTCCAAGTCTTTCAAGCAAGATTTGTAAATCTTCCGAG
1 GAGATTTGTAAGACCTCTAAGCATAATCTCCAAGTCTTTCAAGCAAGATTTGTAAATCTTCCGAG
26974894 TTGAATATATTTTAAAGTT
66 TTGAATATATTTTAAAGTT
26974913 GAGATTTGTAAGACCTCT
1 GAGATTTGTAAGACCTCT
26974931 GGATGTAATT
Statistics
Matches: 99, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
83 12 0.12
84 87 0.88
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (84 bp):
GAGATTTGTAAGACCTCTAAGCATAATCTCCAAGTCTTTCAAGCAAGATTTGTAAATCTTCCGAG
TTGAATATATTTTAAAGTT
Found at i:26981800 original size:37 final size:38
Alignment explanation
Indices: 26981733--26981832 Score: 121
Period size: 37 Copynumber: 2.5 Consensus size: 38
26981723 CTATATCCTA
*
26981733 TTTGGTATAGATCATGGGCTTTACGCTTATTATC-TCT
1 TTTGGTATAGATCATGGGCTTTACGATTATTATCATCT
**
26981770 TTTGGTATAGATCATGGGCTTTATTATTATTATCTATATCT
1 TTTGGTATAGATCATGGGCTTTACGATTATTATC---ATCT
26981811 TGGTTGGTATAGATCATGGGCT
1 T--TTGGTATAGATCATGGGCT
26981833 AGCTGAAGGA
Statistics
Matches: 54, Mismatches: 3, Indels: 6
0.86 0.05 0.10
Matches are distributed among these distances:
37 31 0.57
41 4 0.07
43 19 0.35
ACGTcount: A:0.21, C:0.12, G:0.21, T:0.46
Consensus pattern (38 bp):
TTTGGTATAGATCATGGGCTTTACGATTATTATCATCT
Found at i:26985340 original size:20 final size:20
Alignment explanation
Indices: 26985317--26985366 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
26985307 TTTGAAAATC
**
26985317 TTGAGTATTTTATGAATTTT
1 TTGAGTATTTTACAAATTTT
26985337 TTGAGCT-TTTTACAAATTTT
1 TTGAG-TATTTTACAAATTTT
*
26985357 TTGAATATTT
1 TTGAGTATTT
26985367 CAATTCTTGC
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.26, C:0.04, G:0.12, T:0.58
Consensus pattern (20 bp):
TTGAGTATTTTACAAATTTT
Found at i:26986792 original size:6 final size:6
Alignment explanation
Indices: 26986781--26986848 Score: 52
Period size: 6 Copynumber: 11.8 Consensus size: 6
26986771 TTTTTTATTG
* * * *
26986781 TGTTAT TGTTAT TG---T TGTTGT TGTTGT TGTTAT TATTAT TATTAT
1 TGTTAT TGTTAT TGTTAT TGTTAT TGTTAT TGTTAT TGTTAT TGTTAT
* * *
26986826 TATTAT TATTAT TATTAT TGTTA
1 TGTTAT TGTTAT TGTTAT TGTTA
26986849 ATTAAATTTA
Statistics
Matches: 56, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
3 3 0.05
6 53 0.95
ACGTcount: A:0.21, C:0.00, G:0.13, T:0.66
Consensus pattern (6 bp):
TGTTAT
Found at i:26986816 original size:3 final size:3
Alignment explanation
Indices: 26986810--26986844 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
26986800 GTTGTTGTTG
26986810 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
26986845 GTTAATTAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:26988481 original size:36 final size:36
Alignment explanation
Indices: 26988391--26988495 Score: 149
Period size: 36 Copynumber: 2.9 Consensus size: 36
26988381 TTATTCTTAT
26988391 TCTGAATAAGTATGTTTGAACAGAAAAACATGATTG
1 TCTGAATAAGTATGTTTGAACAGAAAAACATGATTG
* * *
26988427 TTTGAATAAGCATATTTGAACAGAAAAACATGATTG
1 TCTGAATAAGTATGTTTGAACAGAAAAACATGATTG
* *
26988463 TCTGAATAAGTTTGTTTGAATA-AGAAAACATGA
1 TCTGAATAAGTATGTTTGAACAGA-AAAACATGA
26988496 CTATATAGAT
Statistics
Matches: 60, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
35 1 0.02
36 59 0.98
ACGTcount: A:0.43, C:0.08, G:0.18, T:0.31
Consensus pattern (36 bp):
TCTGAATAAGTATGTTTGAACAGAAAAACATGATTG
Found at i:27006730 original size:58 final size:59
Alignment explanation
Indices: 27006614--27007180 Score: 714
Period size: 58 Copynumber: 9.8 Consensus size: 59
27006604 AAATTCCCTC
* * *
27006614 ACTTTCAAC-TTTTCCCTAAAAATATTTTTTTTGAAAAGCTTATTTTCAAGGAAAATTGAT
1 ACTTTCAACTTTTTCTC-AAAAATATTTTTTTAGAAAA-CTTATTTTCAAGAAAAATTGAT
* * *
27006674 ACTTACAACTTTTTCTCAAAAATATTTTTTTGGAAAACTTA-TTTCAAGGAAAATTGAT
1 ACTTTCAACTTTTTCTCAAAAATATTTTTTTAGAAAACTTATTTTCAAGAAAAATTGAT
* * * *
27006732 ACTTTCAACTTTTTTTCAAAAATA-TTTTTTAGAAAGCTTATTTTCAAGGAAAATTAAT
1 ACTTTCAACTTTTTCTCAAAAATATTTTTTTAGAAAACTTATTTTCAAGAAAAATTGAT
* * * * *
27006790 ACTTTCAACTTTTT-TCCAAAATA-TTTTTTAG-GAACTTTTTTTTAAGAAAAATTAAT
1 ACTTTCAACTTTTTCTCAAAAATATTTTTTTAGAAAACTTATTTTCAAGAAAAATTGAT
*
27006846 ACTTTCAAC-TTTTCTTCAAAAATA-TTTTTGAGAAAACTTATTTTCAAGAAAAATTGAT
1 ACTTTCAACTTTTTC-TCAAAAATATTTTTTTAGAAAACTTATTTTCAAGAAAAATTGAT
* * * *
27006904 ACTTTCAACTTATCCTCAAAAGTA-TTTTTTAGAAAACTTATTTTTAAGAAAAATTGAT
1 ACTTTCAACTTTTTCTCAAAAATATTTTTTTAGAAAACTTATTTTCAAGAAAAATTGAT
* *
27006962 ACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAAACTTATTTTCAAGAAAAATTGAT
1 ACTTTCAACTTTTTCTCAAAAATATTTTTTTAG-AAAACTTATTTTCAAGAAAAATTGAT
* *
27007022 ACTTTCAACTTTTTCTCAAAAATATATTTTTTAAAAAAACTTA-TTT-AAAAAAAATTGAT
1 ACTTTCAACTTTTTCTCAAAAATAT-TTTTTT-AGAAAACTTATTTTCAAGAAAAATTGAT
* * *
27007081 ACTTTCAACTTTTT-TCCAAAATA--TTTTTAG-AAACTTATTTTTAAGGAAAATTGAT
1 ACTTTCAACTTTTTCTCAAAAATATTTTTTTAGAAAACTTATTTTCAAGAAAAATTGAT
* *
27007136 ACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAAACTTATTTT
1 ACTTTCAACTTTTTCTCAAAAATATTTTTTTAGAAAACTTATTTT
27007181 ATATTTTTTA
Statistics
Matches: 451, Mismatches: 40, Indels: 33
0.86 0.08 0.06
Matches are distributed among these distances:
53 7 0.02
54 4 0.01
55 34 0.08
56 37 0.08
57 45 0.10
58 174 0.39
59 51 0.11
60 79 0.18
61 20 0.04
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (59 bp):
ACTTTCAACTTTTTCTCAAAAATATTTTTTTAGAAAACTTATTTTCAAGAAAAATTGAT
Found at i:27006904 original size:172 final size:171
Alignment explanation
Indices: 27006614--27007180 Score: 714
Period size: 172 Copynumber: 3.2 Consensus size: 171
27006604 AAATTCCCTC
** * * *
27006614 ACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAAGCTTATTTTCAAGGAAAATTGATACTTA
1 ACTTTCAACTTTTTTC-AAAAATA--TTTTTT-AAAAACTTATTTTCAAGAAAAATTGATACTTT
*
27006679 CAACTTTTTCTCAAAAATATTTTTTTG-GAAAACTTATTTCAAGGAAAATTGATACTTTCAACTT
62 CAACTTTTTCTCAAAAATA-TTTTTTGAGAAAACTTATTTCAAGAAAAATTGATACTTTCAACTT
* *
27006743 TTTTTCAAAAATATTTTTTAGAAAGCTTATTTTCAAGGAAAATTAAT
126 TTTTTCAAAAATATTTTTTAGAAA-CTTATTTTTAAGGAAAATTGAT
* ** * * *
27006790 ACTTTCAACTTTTTTCCAAAATATTTTTTAGGAACTTTTTTTTAAGAAAAATTAATACTTTCAAC
1 ACTTTCAACTTTTTTCAAAAATATTTTTTAAAAACTTATTTTCAAGAAAAATTGATACTTTCAAC
* *
27006855 -TTTTCTTCAAAAATA-TTTTTGAGAAAACTTATTTTCAAGAAAAATTGATACTTTCAACTTATC
66 TTTTTC-TCAAAAATATTTTTTGAGAAAACTTA-TTTCAAGAAAAATTGATACTTTCAACTTTTT
* * *
27006918 CTCAAAAGTATTTTTTAGAAAACTTATTTTTAAGAAAAATTGAT
129 TTCAAAAATATTTTTTAG-AAACTTATTTTTAAGGAAAATTGAT
*
27006962 ACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAAACTTATTTTCAAGAAAAATTGATACTTT
1 ACTTTCAACTTTT-TTCAAAAATA--TTTTTT-AAAAACTTATTTTCAAGAAAAATTGATACTTT
* * *
27007027 CAACTTTTTCTCAAAAATATATTTTTTAAAAAAACTTATTT-AAAAAAAATTGATACTTTCAAC-
62 CAACTTTTTCTC-AAAA-ATATTTTTTGAGAAAACTTATTTCAAGAAAAATTGATACTTTCAACT
*
27007090 TTTTTTCCAAAATA-TTTTTAGAAACTTATTTTTAAGGAAAATTGAT
125 TTTTTTCAAAAATATTTTTTAGAAACTTATTTTTAAGGAAAATTGAT
27007136 ACTTTCAACTTTTTCTCAAAAATATTTTTTAAAAAAACTTATTTT
1 ACTTTCAACTTTTT-TCAAAAATATTTTTT--AAAAACTTATTTT
27007181 ATATTTTTTA
Statistics
Matches: 340, Mismatches: 37, Indels: 31
0.83 0.09 0.08
Matches are distributed among these distances:
170 6 0.02
171 14 0.04
172 119 0.35
173 30 0.09
174 46 0.14
175 19 0.06
176 56 0.16
177 30 0.09
178 6 0.02
179 14 0.04
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (171 bp):
ACTTTCAACTTTTTTCAAAAATATTTTTTAAAAACTTATTTTCAAGAAAAATTGATACTTTCAAC
TTTTTCTCAAAAATATTTTTTGAGAAAACTTATTTCAAGAAAAATTGATACTTTCAACTTTTTTT
CAAAAATATTTTTTAGAAACTTATTTTTAAGGAAAATTGAT
Found at i:27007140 original size:290 final size:291
Alignment explanation
Indices: 27006614--27007180 Score: 826
Period size: 290 Copynumber: 2.0 Consensus size: 291
27006604 AAATTCCCTC
* * *
27006614 ACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAAGCTTATTTTCAAGGAAAATTGATACTTA
1 ACTTTCAACTTATCCCTAAAAATATTTTTTTAGAAAAGCTTATTTTCAAGAAAAATTGATACTTA
* * *
27006679 CAACTTTTTCTCAAAAATATTTTTTTGGAAAACTTATTTCAAGGAAAATTGATACTTTCAACTTT
66 CAACTTTTCCTCAAAAATATTTTTTTGAAAAACTTATTTCAAGAAAAATTGATACTTTCAACTTT
* * * **
27006744 TTTTCAAAAATATTTTTTAGAAAGCTTATTTTCAAGGAAAATTAATACTTTCAACTTTTTTCCAA
131 TTCTCAAAAATATTTTTTAAAAAACTTATTTTCAAAAAAAATTAATACTTTCAACTTTTTTCCAA
* *
27006809 AATATTTTTTAGGAACTTTTTTTTAAGAAAAATTAATACTTTCAAC-TTTTCTTCAAAAATA-TT
196 AATATTTTTTAGAAACTTATTTTTAAGAAAAATTAATACTTTCAACTTTTTC-TCAAAAATATTT
* *
27006872 TTTGAGAAAACTTATTTTCAAGAAAAATTGAT
260 TTTAAAAAAACTTATTTTCAAGAAAAATTGAT
* *
27006904 ACTTTCAACTTAT-CCTCAAAAGTA-TTTTTTAGAAAA-CTTATTTTTAAGAAAAATTGATACTT
1 ACTTTCAACTTATCCCT-AAAAATATTTTTTTAGAAAAGCTTATTTTCAAGAAAAATTGATACTT
*
27006966 TCAACTTTTCCTCAAAAATATTTTTTTTGAAAAACTTATTTTCAAGAAAAATTGATACTTTCAAC
65 ACAACTTTTCCTCAAAAATA-TTTTTTTGAAAAACTTA-TTTCAAGAAAAATTGATACTTTCAAC
*
27007031 TTTTTCTCAAAAATATATTTTTTAAAAAAACTTA-TTT-AAAAAAAATTGATACTTTCAACTTTT
128 TTTTTCTC-AAAA-ATATTTTTT-AAAAAACTTATTTTCAAAAAAAATTAATACTTTCAACTTTT
* *
27007094 TTCCAAAATA-TTTTTAGAAACTTATTTTTAAGGAAAATTGATACTTTCAACTTTTTCTCAAAAA
190 TTCCAAAATATTTTTTAGAAACTTATTTTTAAGAAAAATTAATACTTTCAACTTTTTCTCAAAAA
27007158 TATTTTTTAAAAAAACTTATTTT
255 TATTTTTTAAAAAAACTTATTTT
27007181 ATATTTTTTA
Statistics
Matches: 248, Mismatches: 21, Indels: 15
0.87 0.07 0.05
Matches are distributed among these distances:
288 42 0.17
289 30 0.12
290 96 0.39
291 60 0.24
292 12 0.05
293 8 0.03
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (291 bp):
ACTTTCAACTTATCCCTAAAAATATTTTTTTAGAAAAGCTTATTTTCAAGAAAAATTGATACTTA
CAACTTTTCCTCAAAAATATTTTTTTGAAAAACTTATTTCAAGAAAAATTGATACTTTCAACTTT
TTCTCAAAAATATTTTTTAAAAAACTTATTTTCAAAAAAAATTAATACTTTCAACTTTTTTCCAA
AATATTTTTTAGAAACTTATTTTTAAGAAAAATTAATACTTTCAACTTTTTCTCAAAAATATTTT
TTAAAAAAACTTATTTTCAAGAAAAATTGAT
Found at i:27007172 original size:114 final size:115
Alignment explanation
Indices: 27006614--27007179 Score: 718
Period size: 114 Copynumber: 4.9 Consensus size: 115
27006604 AAATTCCCTC
*
27006614 ACTTTCAACTTTTC-CCTAAAAATATTTTTTTTGA-AAAGCTTATTTTCAAGGAAAATTGATACT
1 ACTTTCAACTTTTCTTC-AAAAATA--TTTTTTGAGAAA-CTTATTTTCAAGGAAAATTGATACT
* ** *
27006677 TACAACTTTTTCTCAAAAATATTTTTTTGGAAAACTTATTTCAAGGAAAATTGAT
62 TTCAACTTTTTCTCAAAAATATTTTTTAAGAAAACTTATTT-AAGAAAAATTGAT
* *
27006732 ACTTTCAACTTTTTTTCAAAAATATTTTTT-AGAAAGCTTATTTTCAAGGAAAATTAATACTTTC
1 ACTTTCAACTTTTCTTCAAAAATATTTTTTGAGAAA-CTTATTTTCAAGGAAAATTGATACTTTC
* * *** * *
27006796 AACTTTTT-TCCAAAATATTTTTTAGGAACTTTTTTTTAAGAAAAATTAAT
65 AACTTTTTCTCAAAAATATTTTTTAAGAAAACTTATTTAAGAAAAATTGAT
*
27006846 ACTTTCAACTTTTCTTCAAAAATA-TTTTTGAGAAAACTTATTTTCAAGAAAAATTGATACTTTC
1 ACTTTCAACTTTTCTTCAAAAATATTTTTTGAG-AAACTTATTTTCAAGGAAAATTGATACTTTC
* * *
27006910 AACTTATCCTCAAAAGTATTTTTT-AGAAAACTTATTTTTAAGAAAAATTGAT
65 AACTTTTTCTCAAAAATATTTTTTAAGAAAACTTA--TTTAAGAAAAATTGAT
* * *
27006962 ACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAAACTTATTTTCAAGAAAAATTGATACTTT
1 ACTTTCAACTTTTCTTCAAAAATA--TTTTTTGAGAAACTTATTTTCAAGGAAAATTGATACTTT
* *
27007027 CAACTTTTTCTCAAAAATATATTTTTTAAAAAAACTTATTTAAAAAAAATTGAT
64 CAACTTTTTCTC-AAAA-ATATTTTTTAAGAAAACTTATTTAAGAAAAATTGAT
* *
27007081 ACTTTCAACTTTT-TTCCAAAATA-TTTTT-AGAAACTTATTTTTAAGGAAAATTGATACTTTCA
1 ACTTTCAACTTTTCTTCAAAAATATTTTTTGAGAAACTTATTTTCAAGGAAAATTGATACTTTCA
*
27007143 ACTTTTTCTCAAAAATATTTTTTAAAAAAACTTATTT
66 ACTTTTTCTCAAAAATATTTTTTAAGAAAACTTATTT
27007180 TATATTTTTT
Statistics
Matches: 398, Mismatches: 37, Indels: 32
0.85 0.08 0.07
Matches are distributed among these distances:
112 23 0.06
113 9 0.02
114 114 0.29
115 45 0.11
116 82 0.21
118 68 0.17
119 40 0.10
120 8 0.02
121 9 0.02
ACGTcount: A:0.39, C:0.12, G:0.06, T:0.44
Consensus pattern (115 bp):
ACTTTCAACTTTTCTTCAAAAATATTTTTTGAGAAACTTATTTTCAAGGAAAATTGATACTTTCA
ACTTTTTCTCAAAAATATTTTTTAAGAAAACTTATTTAAGAAAAATTGAT
Found at i:27007265 original size:11 final size:10
Alignment explanation
Indices: 27007248--27007328 Score: 65
Period size: 11 Copynumber: 7.6 Consensus size: 10
27007238 AAACACATAG
27007248 ATAAAAAAAA
1 ATAAAAAAAA
27007258 ATTAAAAAAAA
1 A-TAAAAAAAA
* *
27007269 CTACAAAAAA
1 ATAAAAAAAA
* *
27007279 A-CAAAGAAA
1 ATAAAAAAAA
27007288 ATAAACAAAAA
1 ATAAA-AAAAA
27007299 ATAAAAATAAA
1 ATAAAAA-AAA
27007310 TACTAAAAAAAA
1 -A-TAAAAAAAA
27007322 ATCAAAA
1 AT-AAAA
27007329 CGGTTCGGCT
Statistics
Matches: 56, Mismatches: 8, Indels: 13
0.73 0.10 0.17
Matches are distributed among these distances:
9 6 0.11
10 14 0.25
11 26 0.46
12 4 0.07
13 6 0.11
ACGTcount: A:0.79, C:0.07, G:0.01, T:0.12
Consensus pattern (10 bp):
ATAAAAAAAA
Found at i:27007278 original size:21 final size:21
Alignment explanation
Indices: 27007249--27007328 Score: 83
Period size: 20 Copynumber: 3.8 Consensus size: 21
27007239 AACACATAGA
*
27007249 TAAAAAAAAATTAAAAAAAAC
1 TAAAAAAAAATCAAAAAAAAC
* *
27007270 TACAAAAAAA-CAAAGAAAA-
1 TAAAAAAAAATCAAAAAAAAC
*
27007289 TAAACAAAAAATAAAAATAAATAC
1 TAAA-AAAAAATCAAAA-AAA-AC
27007313 TAAAAAAAAATCAAAA
1 TAAAAAAAAATCAAAA
27007329 CGGTTCGGCT
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
19 3 0.06
20 13 0.28
21 12 0.26
22 3 0.06
23 12 0.26
24 4 0.09
ACGTcount: A:0.79, C:0.07, G:0.01, T:0.12
Consensus pattern (21 bp):
TAAAAAAAAATCAAAAAAAAC
Found at i:27007292 original size:40 final size:44
Alignment explanation
Indices: 27007248--27007327 Score: 114
Period size: 41 Copynumber: 1.9 Consensus size: 44
27007238 AAACACATAG
* *
27007248 ATAAA-AAAAAATTAAAA-AAA-ACTACAAAAAAA-CAAAGAAA
1 ATAAACAAAAAATAAAAATAAATACTAAAAAAAAATCAAAGAAA
27007288 ATAAACAAAAAATAAAAATAAATACTAAAAAAAAATCAAA
1 ATAAACAAAAAATAAAAATAAATACTAAAAAAAAATCAAA
27007328 ACGGTTCGGC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
40 5 0.15
41 11 0.32
42 3 0.09
43 11 0.32
44 4 0.12
ACGTcount: A:0.79, C:0.07, G:0.01, T:0.12
Consensus pattern (44 bp):
ATAAACAAAAAATAAAAATAAATACTAAAAAAAAATCAAAGAAA
Found at i:27008628 original size:23 final size:22
Alignment explanation
Indices: 27008577--27008631 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 22
27008567 ATAAAAAGGG
*
27008577 ATAAAAATGATAAATACAAAAAT
1 ATAAAAAT-CTAAATACAAAAAT
*
27008600 AGAAAAATCTAAA-ACAAAAAT
1 ATAAAAATCTAAATACAAAAAT
27008621 GAATAAAAATC
1 --ATAAAAATC
27008632 CCTACACCCG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 8 0.30
22 4 0.15
23 15 0.56
ACGTcount: A:0.69, C:0.07, G:0.05, T:0.18
Consensus pattern (22 bp):
ATAAAAATCTAAATACAAAAAT
Found at i:27008914 original size:45 final size:45
Alignment explanation
Indices: 27008845--27009006 Score: 202
Period size: 44 Copynumber: 3.6 Consensus size: 45
27008835 AGCTCAACCA
* * *
27008845 CAGAGACTCAACAACTTTGGAAAAATAAACAAAGGCTCCTCTAAG
1 CAGAGGCTCAACGACTTTGAAAAAATAAACAAAGGCTCCTCTAAG
* * *
27008890 CAGAGGCTCAATGACTTTGAAAAAATAAATAAA-GCTCCTCTAAA
1 CAGAGGCTCAACGACTTTGAAAAAATAAACAAAGGCTCCTCTAAG
* ** *
27008934 CAGAGGCTCAACAACTTCAAAAAAATAAACAAAGGTTCCTCTAAG
1 CAGAGGCTCAACGACTTTGAAAAAATAAACAAAGGCTCCTCTAAG
* *
27008979 TAGAGGCTC-ACGACTTTGGAAAAATAAA
1 CAGAGGCTCAACGACTTTGAAAAAATAAA
27009007 TAAATTCTCT
Statistics
Matches: 98, Mismatches: 18, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
44 53 0.54
45 45 0.46
ACGTcount: A:0.45, C:0.20, G:0.15, T:0.20
Consensus pattern (45 bp):
CAGAGGCTCAACGACTTTGAAAAAATAAACAAAGGCTCCTCTAAG
Found at i:27008928 original size:44 final size:44
Alignment explanation
Indices: 27008858--27009081 Score: 176
Period size: 44 Copynumber: 5.2 Consensus size: 44
27008848 AGACTCAACA
* *
27008858 ACTTTGGAAAAATAAACAAAGGCTCCTCTAAGCAGAGGCTCAATG
1 ACTTTGAAAAAATAAATAAA-GCTCCTCTAAGCAGAGGCTCAATG
* **
27008903 ACTTTGAAAAAATAAATAAAGCTCCTCTAAACAGAGGCTCAACA
1 ACTTTGAAAAAATAAATAAAGCTCCTCTAAGCAGAGGCTCAATG
** * * * *
27008947 ACTTCAAAAAAATAAACAAAGGTTCCTCTAAGTAGAGGCTC-ACG
1 ACTTTGAAAAAATAAATAAA-GCTCCTCTAAGCAGAGGCTCAATG
* * * * * *
27008991 ACTTTGGAAAAATAAATAAA--TTCTCTAAGCAAAAGCACCATG
1 ACTTTGAAAAAATAAATAAAGCTCCTCTAAGCAGAGGCTCAATG
* * * * *
27009033 AC-TT-CAAAAATAAAT---GCTCCTCTAAACAGAGGCACCATA
1 ACTTTGAAAAAATAAATAAAGCTCCTCTAAGCAGAGGCTCAATG
27009072 ACTTTGAAAA
1 ACTTTGAAAA
27009082 GTAAATTGCT
Statistics
Matches: 144, Mismatches: 29, Indels: 16
0.76 0.15 0.08
Matches are distributed among these distances:
39 19 0.13
40 12 0.08
41 18 0.12
42 4 0.03
44 56 0.39
45 35 0.24
ACGTcount: A:0.45, C:0.20, G:0.14, T:0.21
Consensus pattern (44 bp):
ACTTTGAAAAAATAAATAAAGCTCCTCTAAGCAGAGGCTCAATG
Found at i:27008984 original size:89 final size:88
Alignment explanation
Indices: 27008844--27009010 Score: 253
Period size: 89 Copynumber: 1.9 Consensus size: 88
27008834 AAGCTCAACC
*** *
27008844 ACAGAGACTCAACAACTTTGGAAAAATAAACAAAGGCTCCTCTAAGCAGAGGCTCAATGACTTTG
1 ACAGAGACTCAACAACTTCAAAAAAATAAACAAAGGCTCCTCTAAGCAGAGGCTC-ACGACTTTG
27008909 AAAAAATAAATAAAGCTCCTCTAA
65 AAAAAATAAATAAAGCTCCTCTAA
* * * *
27008933 ACAGAGGCTCAACAACTTCAAAAAAATAAACAAAGGTTCCTCTAAGTAGAGGCTCACGACTTTGG
1 ACAGAGACTCAACAACTTCAAAAAAATAAACAAAGGCTCCTCTAAGCAGAGGCTCACGACTTTGA
27008998 AAAAATAAATAAA
66 AAAAATAAATAAA
27009011 TTCTCTAAGC
Statistics
Matches: 70, Mismatches: 8, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
88 21 0.30
89 49 0.70
ACGTcount: A:0.46, C:0.19, G:0.15, T:0.20
Consensus pattern (88 bp):
ACAGAGACTCAACAACTTCAAAAAAATAAACAAAGGCTCCTCTAAGCAGAGGCTCACGACTTTGA
AAAAATAAATAAAGCTCCTCTAA
Found at i:27009140 original size:43 final size:41
Alignment explanation
Indices: 27009038--27009206 Score: 205
Period size: 41 Copynumber: 4.1 Consensus size: 41
27009028 CCATGACTTC
* *
27009038 AAAAATAAA-TGCTCCTCTAAACAGAGGCACCATAACTTTG
1 AAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
* *
27009078 AAAAGTAAATTGCTCCTCTAAAGAGAGGAAACCACAACTTTG
1 AAAAGTAAATTGCTCCTCTAAACAGAGG-CACCACAACTTTG
* ** * *
27009120 GAAAGATAAATTGCTCCTCTAAGTAGAGGCACCGCGACTTTG
1 AAAAG-TAAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
** *
27009162 AAAAGTAAATTGCTCCTCTAAACAGAGGCAATAAAACTTTG
1 AAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
27009203 AAAA
1 AAAA
27009207 AAAAATAAAT
Statistics
Matches: 108, Mismatches: 18, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
40 8 0.07
41 50 0.46
42 29 0.27
43 21 0.19
ACGTcount: A:0.41, C:0.20, G:0.17, T:0.22
Consensus pattern (41 bp):
AAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
Found at i:27011024 original size:7 final size:8
Alignment explanation
Indices: 27011005--27011067 Score: 60
Period size: 8 Copynumber: 7.9 Consensus size: 8
27010995 ATTTGAATCT
27011005 TTTTTTCA
1 TTTTTTCA
27011013 TTTTTTCA
1 TTTTTTCA
27011021 TTTTTTC-
1 TTTTTTCA
27011028 TTTCTTT--
1 TTT-TTTCA
*
27011035 TTTTCTCCA
1 TTTT-TTCA
27011044 TTTTTTTCA
1 -TTTTTTCA
*
27011053 TTTTTTTA
1 TTTTTTCA
27011061 TTTTTTC
1 TTTTTTC
27011068 TCATTTTTCA
Statistics
Matches: 46, Mismatches: 4, Indels: 10
0.77 0.07 0.17
Matches are distributed among these distances:
6 1 0.02
7 7 0.15
8 31 0.67
9 3 0.07
10 4 0.09
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78
Consensus pattern (8 bp):
TTTTTTCA
Found at i:27015163 original size:58 final size:58
Alignment explanation
Indices: 27015044--27015444 Score: 541
Period size: 58 Copynumber: 6.9 Consensus size: 58
27015034 TTGTATAGAA
* *
27015044 AAAATTGATACTTTCAACTTTTTCC-C-AAAATATTTTTTAG-AAACTTTAATTTCGAGG
1 AAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTTTAGAAAAC-TTATTTTCAAGG
*
27015101 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTATTTTCAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTATTTTCAAGG
* *
27015159 AAAATTGATACTTTCAACTTTTTCC-C--AAATA-TTTTTAG-AAACTTATTTTTAAGA
1 AAAATTGATACTTTCAAC-TTTTCCTCAAAAATATTTTTTAGAAAACTTATTTTCAAGG
* *
27015213 AAAATTGATACTTTCAGCTTTTCCTC-AAAATATTTTTTAGAAAACTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTATTTTCAAGG
*
27015270 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTGTTTGAAAAACTTATTTTCAAGG
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTT-TTAG-AAAACTTATTTTCAAGG
* * *
27015330 AAAATTGATACTTTCAACTTTTTCTCAAAAATATATTTTTTAAAAAAAACTTATTTTTAAGG
1 AAAATTGATACTTTCAACTTTTCCTC-AAAA-ATATTTTTT--AGAAAACTTATTTTCAAGG
* *
27015392 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTAAAAAAACTTATTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTATTTT
27015445 ATATTTTTGA
Statistics
Matches: 314, Mismatches: 15, Indels: 29
0.88 0.04 0.08
Matches are distributed among these distances:
53 6 0.02
54 33 0.11
55 12 0.04
56 18 0.06
57 59 0.19
58 66 0.21
59 13 0.04
60 49 0.16
61 10 0.03
62 48 0.15
ACGTcount: A:0.38, C:0.13, G:0.06, T:0.43
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTATTTTCAAGG
Found at i:27016893 original size:23 final size:24
Alignment explanation
Indices: 27016834--27016896 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 24
27016824 GATAGACCAT
* *
27016834 AAAAAGGAATAAAAATGATAAATAC
1 AAAAATGAATAAAAAT-CTAAATAC
*
27016859 AAAAAT--AGAAAAATCTAAA-AC
1 AAAAATGAATAAAAATCTAAATAC
27016880 AAAAATGAATAAAAATC
1 AAAAATGAATAAAAATC
27016897 CCTACACCTT
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
21 8 0.25
22 4 0.12
23 15 0.47
25 5 0.16
ACGTcount: A:0.70, C:0.06, G:0.08, T:0.16
Consensus pattern (24 bp):
AAAAATGAATAAAAATCTAAATAC
Found at i:27017752 original size:2 final size:2
Alignment explanation
Indices: 27017745--27017772 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
27017735 TGGTTTAGCA
27017745 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27017773 GGGATCTTTG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:27021960 original size:20 final size:20
Alignment explanation
Indices: 27021935--27021977 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
27021925 AAAAATATTG
*
27021935 TTATCGATAGATTTTTATCA
1 TTATCGATAGAATTTTATCA
* *
27021955 TTATCGATGGAATTTTATTA
1 TTATCGATAGAATTTTATCA
27021975 TTA
1 TTA
27021978 CTAACGGTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.07, G:0.12, T:0.51
Consensus pattern (20 bp):
TTATCGATAGAATTTTATCA
Found at i:27022665 original size:25 final size:23
Alignment explanation
Indices: 27022636--27022702 Score: 71
Period size: 25 Copynumber: 2.7 Consensus size: 23
27022626 AAATTATAGG
* *
27022636 TTTTTGTTTTTGTTTTTATCTTTA
1 TTTTTTTTTTTGTTTTTA-ATTTA
*
27022660 TTTTTTTATTTTGATTTTAATTTA
1 TTTTTTT-TTTTGTTTTTAATTTA
27022684 TTTTCTATTTTTTGTTTTT
1 TTTT-T-TTTTTTGTTTTT
27022703 TTCTATTTTC
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
24 14 0.39
25 20 0.56
26 2 0.06
ACGTcount: A:0.12, C:0.03, G:0.06, T:0.79
Consensus pattern (23 bp):
TTTTTTTTTTTGTTTTTAATTTA
Found at i:27022882 original size:20 final size:20
Alignment explanation
Indices: 27022854--27022956 Score: 104
Period size: 20 Copynumber: 5.3 Consensus size: 20
27022844 TGAATTTAAT
*
27022854 TTAACAATATATTTGCATGA
1 TTAATAATATATTTGCATGA
* *
27022874 TTAATAATATACTTGCATAA
1 TTAATAATATATTTGCATGA
* *
27022894 TTATTGAT-TATTTGCATGA
1 TTAATAATATATTTGCATGA
*
27022913 TTACTAATATATTTGCATGA
1 TTAATAATATATTTGCATGA
* * *
27022933 CT-ATTAT-TATTTACATGA
1 TTAATAATATATTTGCATGA
27022951 TTAATA
1 TTAATA
27022957 TTTGTATGAT
Statistics
Matches: 66, Mismatches: 15, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
18 11 0.17
19 20 0.30
20 35 0.53
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.46
Consensus pattern (20 bp):
TTAATAATATATTTGCATGA
Found at i:27022906 original size:39 final size:38
Alignment explanation
Indices: 27022863--27022956 Score: 134
Period size: 39 Copynumber: 2.4 Consensus size: 38
27022853 TTTAACAATA
*
27022863 TATTTGCATGATTAATAATATACTTGCATAATTATTGAT
1 TATTTGCATGATTAATAATATACTTGCATAACTATT-AT
* * *
27022902 TATTTGCATGATTACTAATATATTTGCATGACTATTAT
1 TATTTGCATGATTAATAATATACTTGCATAACTATTAT
*
27022940 TATTTACATGATTAATA
1 TATTTGCATGATTAATA
27022957 TTTGTATGAT
Statistics
Matches: 49, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
38 17 0.35
39 32 0.65
ACGTcount: A:0.35, C:0.09, G:0.10, T:0.47
Consensus pattern (38 bp):
TATTTGCATGATTAATAATATACTTGCATAACTATTAT
Found at i:27024152 original size:10 final size:10
Alignment explanation
Indices: 27024116--27024160 Score: 54
Period size: 10 Copynumber: 4.3 Consensus size: 10
27024106 CAAAAATGAA
27024116 AAAAAAAAAG
1 AAAAAAAAAG
*
27024126 AAGAAATGAAAG
1 AA-AAA-AAAAG
27024138 AAAAAAAAAG
1 AAAAAAAAAG
*
27024148 GAAAAAAAAG
1 AAAAAAAAAG
27024158 AAA
1 AAA
27024161 GAGATACTTG
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
10 17 0.59
11 6 0.21
12 6 0.21
ACGTcount: A:0.82, C:0.00, G:0.16, T:0.02
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:27024157 original size:20 final size:22
Alignment explanation
Indices: 27024115--27024160 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
27024105 TCAAAAATGA
27024115 AAAAAAAAAAGAAGAAATGAAAG
1 AAAAAAAAAAGAAGAAA-GAAAG
*
27024138 AAAAAAAAAGGAA-AAA-AAAG
1 AAAAAAAAAAGAAGAAAGAAAG
27024158 AAA
1 AAA
27024161 GAGATACTTG
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
20 7 0.32
22 3 0.14
23 12 0.55
ACGTcount: A:0.83, C:0.00, G:0.15, T:0.02
Consensus pattern (22 bp):
AAAAAAAAAAGAAGAAAGAAAG
Found at i:27024160 original size:24 final size:23
Alignment explanation
Indices: 27024115--27024162 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
27024105 TCAAAAATGA
* *
27024115 AAAAAAAAAAGAAGAAATGAAAG
1 AAAAAAAAAAGAAAAAAAGAAAG
*
27024138 AAAAAAAAAGGAAAAAAAAGAAAG
1 AAAAAAAAAAG-AAAAAAAGAAAG
27024162 A
1 A
27024163 GATACTTGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
23 10 0.48
24 11 0.52
ACGTcount: A:0.81, C:0.00, G:0.17, T:0.02
Consensus pattern (23 bp):
AAAAAAAAAAGAAAAAAAGAAAG
Done.