Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 162 of 195
Found at i:27027331 original size:52 final size:52
Alignment explanation
Indices: 27027244--27027399 Score: 217
Period size: 52 Copynumber: 3.0 Consensus size: 52
27027234 TGGACAAGAA
* * *
27027244 GACTTGCAA-AGAAGAATTCCAAGA-GAAAGAAGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAG-GGATTCTTAATAGGCAAGTTT
*
27027295 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
* * * *
27027347 GACTTACAGGAGAAGAATTCTAAGAGGAGAGGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
27027399 G
1 G
27027400 TATGGTTATA
Statistics
Matches: 94, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
51 9 0.10
52 80 0.85
53 5 0.05
ACGTcount: A:0.39, C:0.10, G:0.26, T:0.25
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
Found at i:27028202 original size:11 final size:11
Alignment explanation
Indices: 27028186--27028227 Score: 66
Period size: 11 Copynumber: 3.8 Consensus size: 11
27028176 AATCCCATAA
27028186 GAGATTTGTTT
1 GAGATTTGTTT
*
27028197 GAGATTTGTTA
1 GAGATTTGTTT
27028208 GAGATTTGTTT
1 GAGATTTGTTT
*
27028219 GGGATTTGT
1 GAGATTTGT
27028228 CAGATATTGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
11 28 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:27028213 original size:22 final size:22
Alignment explanation
Indices: 27028185--27028227 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
27028175 AAATCCCATA
27028185 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTGAGATTTGTT
*
27028207 AGAGATTTGTTTGGGATTTGT
1 AGAGATTTGTTTGAGATTTGT
27028228 CAGATATTGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.21, C:0.00, G:0.30, T:0.49
Consensus pattern (22 bp):
AGAGATTTGTTTGAGATTTGTT
Found at i:27028340 original size:52 final size:52
Alignment explanation
Indices: 27028252--27028408 Score: 226
Period size: 52 Copynumber: 3.0 Consensus size: 52
27028242 TGGACAAGAA
* * * *
27028252 GACTTGCAAAAGAAGAATTCCAAGA-GAAAGAAGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAG-GGATTCTTAATAGGCAAGTTT
*
27028304 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
* * *
27028356 GACTTACAGGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
27028408 G
1 G
27028409 TATGGTTATA
Statistics
Matches: 95, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
52 90 0.95
53 5 0.05
ACGTcount: A:0.40, C:0.10, G:0.25, T:0.25
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAGAGGAAAGGGATTCTTAATAGGCAAGTTT
Found at i:27029112 original size:118 final size:117
Alignment explanation
Indices: 27028990--27029211 Score: 327
Period size: 117 Copynumber: 1.9 Consensus size: 117
27028980 AAAAATATAT
* *
27028990 GAAAGTAATACGATTTAAAATTTTAACAATAATTATATATGCATTTAATAAAATAAAAAAAATAT
1 GAAAGTAATACCATTTAAAATTTTAACAATAACT-TATATGCATTTAATAAAATAAAAAAAATAT
27029055 ATTTTATAATTTTATATCGACATAAATTATAATACATAATATAAAAAGGACAA
65 ATTTTATAATTTTATATCGACATAAATTATAATACATAATATAAAAAGGACAA
** * ** *
27029108 GAAAGTGGTACCATTTAAAATTTTAATAATAACTTATATGGGTTTAATAAAATAAAAAATATATA
1 GAAAGTAATACCATTTAAAATTTTAACAATAACTTATATGCATTTAATAAAATAAAAAAAATATA
* * * *
27029173 TTTTATATTTTTATATTGACATAAATTATGATATATAAT
66 TTTTATAATTTTATATCGACATAAATTATAATACATAAT
27029212 TTTTATTTAA
Statistics
Matches: 92, Mismatches: 12, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
117 63 0.68
118 29 0.32
ACGTcount: A:0.50, C:0.05, G:0.07, T:0.38
Consensus pattern (117 bp):
GAAAGTAATACCATTTAAAATTTTAACAATAACTTATATGCATTTAATAAAATAAAAAAAATATA
TTTTATAATTTTATATCGACATAAATTATAATACATAATATAAAAAGGACAA
Found at i:27032339 original size:20 final size:19
Alignment explanation
Indices: 27032297--27032355 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 19
27032287 TAAAAAATGC
* *
27032297 AAAAATAAAAATGAAAGAGA
1 AAAAAGAAAAAAGAAAGA-A
*
27032317 AAATAAGAAGAAATGAAAGAA
1 AAA-AAGAA-AAAAGAAAGAA
27032338 AAAAAGAAAAAAGAAAGA
1 AAAAAGAAAAAAGAAAGA
27032356 GAGACTTGAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
19 9 0.26
20 8 0.23
21 8 0.23
22 10 0.29
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (19 bp):
AAAAAGAAAAAAGAAAGAA
Found at i:27035538 original size:116 final size:118
Alignment explanation
Indices: 27035354--27035585 Score: 317
Period size: 117 Copynumber: 2.0 Consensus size: 118
27035344 ATATGACATG
* * * *
27035354 AAAAAATATATGAAAGTAACACGATTTAAAATTTTAACAATAATTATATATGCATTTAATAAAAT
1 AAAAAAGATAAGAAAGTAACACCATTTAAAATTTTAACAATAACTATATATGCATTTAATAAAAT
*
27035419 AAAAAA-ATATATTTTATAATTT-TATATCGACATAAATTATAATACATAATAC
66 AAAAAATATATATTTTAT-ATTTCTATATCGACATAAACTATAATACATAATAC
* * * **
27035471 AAAAAAGATAAGAAAGTGATACCATTTAAAATTTTAATAATAACT-TATATGGGTTTAATAAAAT
1 AAAAAAGATAAGAAAGTAACACCATTTAAAATTTTAACAATAACTATATATGCATTTAATAAAAT
* * *
27035535 AAAAAATATATATTTTATATTTCTATATTGACATAAACTATGATATATAAT
66 AAAAAATATATATTTTATATTTCTATATCGACATAAACTATAATACATAAT
27035586 TTTTATTTAA
Statistics
Matches: 100, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
116 27 0.27
117 73 0.73
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (118 bp):
AAAAAAGATAAGAAAGTAACACCATTTAAAATTTTAACAATAACTATATATGCATTTAATAAAAT
AAAAAATATATATTTTATATTTCTATATCGACATAAACTATAATACATAATAC
Found at i:27038919 original size:46 final size:46
Alignment explanation
Indices: 27038866--27038959 Score: 179
Period size: 46 Copynumber: 2.0 Consensus size: 46
27038856 TTAAAAATTT
27038866 TGTTTGTAATATCAGCTGTGAAACATTGACAGTTGAACTCTTCAAA
1 TGTTTGTAATATCAGCTGTGAAACATTGACAGTTGAACTCTTCAAA
*
27038912 TGTTTGTAATATCAGCTGTGAAATATTGACAGTTGAACTCTTCAAA
1 TGTTTGTAATATCAGCTGTGAAACATTGACAGTTGAACTCTTCAAA
27038958 TG
1 TG
27038960 CTTGACTGTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.32, C:0.14, G:0.18, T:0.36
Consensus pattern (46 bp):
TGTTTGTAATATCAGCTGTGAAACATTGACAGTTGAACTCTTCAAA
Found at i:27038964 original size:24 final size:24
Alignment explanation
Indices: 27038937--27038984 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
27038927 CTGTGAAATA
27038937 TTGACAGTTGAACTCTTCAAATGC
1 TTGACAGTTGAACTCTTCAAATGC
*
27038961 TTGACTGTTGAACTCTTCAAATGC
1 TTGACAGTTGAACTCTTCAAATGC
27038985 CTTACCGGCT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (24 bp):
TTGACAGTTGAACTCTTCAAATGC
Found at i:27044508 original size:12 final size:12
Alignment explanation
Indices: 27044491--27044525 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
27044481 ATTTCGAAAG
27044491 TTTAGGGTTTGA
1 TTTAGGGTTTGA
27044503 TTTAGGGTTTGA
1 TTTAGGGTTTGA
27044515 TTTAGGGTTTG
1 TTTAGGGTTTG
27044526 GGGATTACGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.14, C:0.00, G:0.34, T:0.51
Consensus pattern (12 bp):
TTTAGGGTTTGA
Found at i:27044553 original size:14 final size:14
Alignment explanation
Indices: 27044491--27044634 Score: 57
Period size: 14 Copynumber: 10.3 Consensus size: 14
27044481 ATTTCGAAAG
27044491 TTTAGGG-TTTGA-
1 TTTAGGGTTTTGAT
27044503 TTTAGGG-TTTGA-
1 TTTAGGGTTTTGAT
* **
27044515 TTTAGGGTTTGGGG
1 TTTAGGGTTTTGAT
*
27044529 ATTACGGGTTTTGAT
1 TTTA-GGGTTTTGAT
27044544 TTTAGGGTTTT-AGT
1 TTTAGGGTTTTGA-T
* * *
27044558 TTTAAGGTTTCAAGAG
1 TTTAGGGTTT--TGAT
* * *
27044574 TTT-GTGTTTAGAAA
1 TTTAGGGTTTTG-AT
*
27044588 TTTAGGGTTTTGAAA
1 TTTAGGGTTTTG-AT
**
27044603 TTTAGGGTTTCAAT
1 TTTAGGGTTTTGAT
* *
27044617 TTTAAGGTTTTGGT
1 TTTAGGGTTTTGAT
27044631 TTTA
1 TTTA
27044635 ATTTTTTGAA
Statistics
Matches: 101, Mismatches: 22, Indels: 16
0.73 0.16 0.12
Matches are distributed among these distances:
12 19 0.19
13 6 0.06
14 39 0.39
15 33 0.33
16 3 0.03
17 1 0.01
ACGTcount: A:0.20, C:0.02, G:0.28, T:0.49
Consensus pattern (14 bp):
TTTAGGGTTTTGAT
Found at i:27044597 original size:15 final size:15
Alignment explanation
Indices: 27044579--27044612 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
27044569 AAGAGTTTGT
27044579 GTTTAGAAATTTAGG
1 GTTTAGAAATTTAGG
*
27044594 GTTTTGAAATTTAGG
1 GTTTAGAAATTTAGG
27044609 GTTT
1 GTTT
27044613 CAATTTTAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.26, C:0.00, G:0.26, T:0.47
Consensus pattern (15 bp):
GTTTAGAAATTTAGG
Found at i:27046177 original size:13 final size:12
Alignment explanation
Indices: 27046159--27046199 Score: 50
Period size: 13 Copynumber: 3.4 Consensus size: 12
27046149 TTGTTTTTTA
27046159 TTAATTATTATAT
1 TTAATTATTA-AT
27046172 TTAATTATTAAT
1 TTAATTATTAAT
27046184 TT-ATT-TTAAT
1 TTAATTATTAAT
27046194 ATTAAT
1 -TTAAT
27046200 AAACAAAACT
Statistics
Matches: 26, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
10 5 0.19
11 5 0.19
12 6 0.23
13 10 0.38
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (12 bp):
TTAATTATTAAT
Found at i:27046181 original size:20 final size:18
Alignment explanation
Indices: 27046156--27046199 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 18
27046146 TTTTTGTTTT
27046156 TTATTAATTATTATATTTAA
1 TTATTAATT-TTAT-TTTAA
27046176 TTATTAA-TTTATTTTAA
1 TTATTAATTTTATTTTAA
27046193 -TATTAAT
1 TTATTAAT
27046200 AAACAAAACT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
16 6 0.26
17 5 0.22
18 4 0.17
19 1 0.04
20 7 0.30
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (18 bp):
TTATTAATTTTATTTTAA
Found at i:27046188 original size:16 final size:16
Alignment explanation
Indices: 27046166--27046199 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 16
27046156 TTATTAATTA
27046166 TTATATTTAATTATTAAT
1 TTAT-TTTAA-TATTAAT
27046184 TTATTTTAATATTAAT
1 TTATTTTAATATTAAT
27046200 AAACAAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 7 0.44
17 5 0.31
18 4 0.25
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTATTTTAATATTAAT
Found at i:27046547 original size:73 final size:74
Alignment explanation
Indices: 27046410--27046551 Score: 178
Period size: 73 Copynumber: 1.9 Consensus size: 74
27046400 TAAAGAAAAG
* * ** *
27046410 GACTGGGACAACACCACAAGTTGAAAAATAAGAAAATGACCAAGATAACACTGTGAGTCAAAAAG
1 GACTGGGACAACACCACAAGTTCAAAAATAAGAAAATGACCAAGACAACACCATAAGTCAAAAAG
27046475 TAAATAGTC
66 TAAATAGTC
* * * * **
27046484 GACTGGGACAACATCGCAAG-TCAAAATTAAGAAAATGATCAAGACAACACCATAAGTTGAAAAG
1 GACTGGGACAACACCACAAGTTCAAAAATAAGAAAATGACCAAGACAACACCATAAGTCAAAAAG
27046548 TAAA
66 TAAA
27046552 AAATCAACCA
Statistics
Matches: 57, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
73 39 0.68
74 18 0.32
ACGTcount: A:0.49, C:0.16, G:0.18, T:0.16
Consensus pattern (74 bp):
GACTGGGACAACACCACAAGTTCAAAAATAAGAAAATGACCAAGACAACACCATAAGTCAAAAAG
TAAATAGTC
Found at i:27046617 original size:22 final size:22
Alignment explanation
Indices: 27046592--27046633 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
27046582 ATCATACCCA
27046592 GAGGTCTTAGAGATCATGCTTG
1 GAGGTCTTAGAGATCATGCTTG
*
27046614 GAGGTCTTAGAGATTATGCT
1 GAGGTCTTAGAGATCATGCT
27046634 CAGAAGTTTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.24, C:0.12, G:0.31, T:0.33
Consensus pattern (22 bp):
GAGGTCTTAGAGATCATGCTTG
Found at i:27047023 original size:37 final size:37
Alignment explanation
Indices: 27046982--27047085 Score: 106
Period size: 36 Copynumber: 2.8 Consensus size: 37
27046972 AATTGATCGA
* *
27046982 GATAACACCACAAGTCAAAAAATAAAGAATCGATCAG-
1 GATAACATCACAAGTCAAAAAATAAAAAATCGA-CAGT
* *
27047019 GATAACATCACGAA-TC-AAAATTAAAAAATCGACTGT
1 GATAACATCAC-AAGTCAAAAAATAAAAAATCGACAGT
* *
27047055 GACAACATCATAAGTCAAAAAATAAGAAAAT
1 GATAACATCACAAGTCAAAAAATAA-AAAAT
27047086 GACCGGAACA
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
35 4 0.07
36 25 0.45
37 19 0.35
38 7 0.13
ACGTcount: A:0.55, C:0.16, G:0.12, T:0.17
Consensus pattern (37 bp):
GATAACATCACAAGTCAAAAAATAAAAAATCGACAGT
Found at i:27047266 original size:111 final size:111
Alignment explanation
Indices: 27047065--27047272 Score: 258
Period size: 111 Copynumber: 1.9 Consensus size: 111
27047055 GACAACATCA
** * *
27047065 TAAGTCAAAAAATAAGAAAATGACCGGAACAACACCACGAGTCGAGAAGTAAAAAATTATCCGAG
1 TAAGTCAAAAAATAAGAAAACAACCGGAACAACACCACAAGTCGAGAAGTAAAAAATCATCCGAG
** ** *
27047130 ACAACACAGTGAGTCAAAAGGTAAAGAGTCAACCGAGGCAATATCG
66 ACAACACAGCAAGTCAAAAAATAAAGAATCAACCGAGGCAATATCG
* *
27047176 TAAGTCAAAAAATAAGAAAACAACCAGG-ACAACATCACAAGTCGAGAAGTAAAGAATCATCC-A
1 TAAGTCAAAAAATAAGAAAACAACC-GGAACAACACCACAAGTCGAGAAGTAAAAAATCATCCGA
* * *
27047239 GGATAACACTGCAAGTTAAAAAATAAAGAATCAA
65 -GACAACACAGCAAGTCAAAAAATAAAGAATCAA
27047273 TTGGGACAAT
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
110 1 0.01
111 78 0.96
112 2 0.02
ACGTcount: A:0.51, C:0.17, G:0.18, T:0.14
Consensus pattern (111 bp):
TAAGTCAAAAAATAAGAAAACAACCGGAACAACACCACAAGTCGAGAAGTAAAAAATCATCCGAG
ACAACACAGCAAGTCAAAAAATAAAGAATCAACCGAGGCAATATCG
Found at i:27047283 original size:111 final size:112
Alignment explanation
Indices: 27047055--27047343 Score: 255
Period size: 111 Copynumber: 2.6 Consensus size: 112
27047045 AATCGACTGT
* * ** * *
27047055 GACAACATCATAAGTCAAAAAATAAGAAAATGACC-GGAACAACACCACGAGTCGAGAAGTAAAA
1 GACAATATCGTAAGTCAAAAAATAAGAAAACAACCAGG-ACAACATCACAAGTCGAGAAGTAAAA
* ** ** *
27047119 AATTATCCGAGACAACACAGTGAGTCAAAAGGTAAAGAGTCAACCGAG
65 AATCATCCGAGACAACACAGCAAGTCAAAAAATAAAGAATCAACCGAG
*
27047167 G-CAATATCGTAAGTCAAAAAATAAGAAAACAACCAGGACAACATCACAAGTCGAGAAGTAAAGA
1 GACAATATCGTAAGTCAAAAAATAAGAAAACAACCAGGACAACATCACAAGTCGAGAAGTAAAAA
* * * **
27047231 ATCATCC-AGGATAACACTGCAAGTTAAAAAATAAAGAATCAATTG-G
66 ATCATCCGA-GACAACACAGCAAGTCAAAAAATAAAGAATCAACCGAG
* * * ** * * * * * *
27047277 GACAATATTGTGAGTCGAAAGGTAA-AGAATCAACCAAGACAACATCGCAAGTTGAAAAGTGAAA
1 GACAATATCGTAAGTCAAAAAATAAGA-AAACAACCAGGACAACATCACAAGTCGAGAAGTAAAA
27047341 AAT
65 AAT
27047344 AGGCTAGGAT
Statistics
Matches: 143, Mismatches: 30, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
110 4 0.03
111 136 0.95
112 3 0.02
ACGTcount: A:0.49, C:0.17, G:0.19, T:0.15
Consensus pattern (112 bp):
GACAATATCGTAAGTCAAAAAATAAGAAAACAACCAGGACAACATCACAAGTCGAGAAGTAAAAA
ATCATCCGAGACAACACAGCAAGTCAAAAAATAAAGAATCAACCGAG
Found at i:27047726 original size:99 final size:95
Alignment explanation
Indices: 27047450--27047768 Score: 255
Period size: 99 Copynumber: 3.2 Consensus size: 95
27047440 ACTAAGCTTA
* * ** * ** *
27047450 AGGGCCAGATAAACTGGGCTTAAATCTTTTTTTGAGGCCAGATAAGCTGGGCTTAAATTTCATTA
1 AGGGCCAGATAAACTAGGCTTAAATCTTCTTTAAAAGCCAGATAAATTGGGCTTAAATTTCTTTA
*
27047515 AGGGCTAGCTAAACTGGGCTTAAAATCTCATTTG
66 AGGTC-AGCTAAACT-GGCTTAAAAT-TCA-TTG
* * * * * * * *
27047549 -GGGCTAAATAAACTAGGCTTAAAACTTCATTAATAGCTAGATAAATTAGGTTTAAAATTTTCTT
1 AGGGCCAGATAAACTAGGCTTAAATCTTCTTTAAAAGCCAGATAAATTGGGCTT-AAA-TTTCTT
* * *
27047613 AAAAG-CTAGCTAAACTAAGCTTAAAACTTCATTG
64 TAAGGTC-AGCTAAACT-GGCTTAAAA-TTCATTG
* * *
27047647 ATGGCCAGATAAACTAGGCTTAAATCTTCTTTAAAAACCAAATAAATTGGGCTTAAATCTTCTTT
1 AGGGCCAGATAAACTAGGCTTAAATCTTCTTTAAAAGCCAGATAAATTGGGCTTAAAT-TTCTTT
* * *
27047712 GAAGGTCAGATAAACTGGACTTAAGATTTCATTA
65 -AAGGTCAGCTAAACTGG-CTTAA-AATTCATTG
* *
27047746 AGGGCCAGATAAATTGGGCTTAA
1 AGGGCCAGATAAACTAGGCTTAA
27047769 GAGTAAAGGC
Statistics
Matches: 171, Mismatches: 40, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
97 1 0.01
98 50 0.29
99 109 0.64
100 11 0.06
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.31
Consensus pattern (95 bp):
AGGGCCAGATAAACTAGGCTTAAATCTTCTTTAAAAGCCAGATAAATTGGGCTTAAATTTCTTTA
AGGTCAGCTAAACTGGCTTAAAATTCATTG
Found at i:27047770 original size:33 final size:32
Alignment explanation
Indices: 27047447--27047768 Score: 173
Period size: 33 Copynumber: 9.8 Consensus size: 32
27047437 TAAACTAAGC
*
27047447 TTAAGGGCCAGATAAACTGGGCTTAAATCTT-T
1 TTAAGGGCCAGATAAACTGGGCTTAAAT-TTCA
** *
27047479 TTTTGAGGCCAGATAAGCTGGGCTTAAATTTCA
1 TTAAG-GGCCAGATAAACTGGGCTTAAATTTCA
* * *
27047512 TTAAGGGCTAGCTAAACTGGGCTTAAAATCTCA
1 TTAAGGGCCAGATAAACTGGGCTT-AAATTTCA
** * * * *
27047545 TTTGGGGCTAAATAAACTAGGCTTAAAACTTCA
1 TTAAGGGCCAGATAAACTGGGCTT-AAATTTCA
** * * * *
27047578 TTAATAGCTAGATAAATTAGGTTTAAAATTTTC-
1 TTAAGGGCCAGATAAACTGGGCTT-AAA-TTTCA
** * * ** *
27047611 TTAAAAGCTAGCTAAACTAAGCTTAAAACTTCA
1 TTAAGGGCCAGATAAACTGGGCTT-AAATTTCA
* * * *
27047644 TTGATGGCCAGATAAACTAGGCTTAAATCTTCT
1 TTAAGGGCCAGATAAACTGGGCTTAAAT-TTCA
*** * * *
27047677 TTAAAAACCAAATAAATTGGGCTTAAATCTTCT
1 TTAAGGGCCAGATAAACTGGGCTTAAAT-TTCA
* *
27047710 TTGAA-GGTCAGATAAACTGGACTTAAGATTTCA
1 TT-AAGGGCCAGATAAACTGGGCTTAA-ATTTCA
*
27047743 TTAAGGGCCAGATAAATTGGGCTTAA
1 TTAAGGGCCAGATAAACTGGGCTTAA
27047769 GAGTAAAGGC
Statistics
Matches: 225, Mismatches: 56, Indels: 17
0.76 0.19 0.06
Matches are distributed among these distances:
32 29 0.13
33 189 0.84
34 7 0.03
ACGTcount: A:0.36, C:0.15, G:0.18, T:0.32
Consensus pattern (32 bp):
TTAAGGGCCAGATAAACTGGGCTTAAATTTCA
Found at i:27048074 original size:23 final size:23
Alignment explanation
Indices: 27048045--27048103 Score: 77
Period size: 23 Copynumber: 2.6 Consensus size: 23
27048035 TCAACTAATT
27048045 TGGGCTTATTATGCTAGC-AAAA
1 TGGGCTTATTATGCTAGCTAAAA
* *
27048067 CTGGGCTTATTGTGCTAGCTAATA
1 -TGGGCTTATTATGCTAGCTAAAA
27048091 TGGGCTTA-TATGC
1 TGGGCTTATTATGC
27048104 CATTTAATCT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
22 4 0.12
23 25 0.78
24 3 0.09
ACGTcount: A:0.24, C:0.15, G:0.25, T:0.36
Consensus pattern (23 bp):
TGGGCTTATTATGCTAGCTAAAA
Found at i:27048288 original size:32 final size:32
Alignment explanation
Indices: 27048215--27048290 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
27048205 ACATGTCAAT
* *
27048215 TAAATTGGGCTTAAAACTTTATTGATGCCAAC
1 TAAATTGGGCTTAAAACTTCATTGAGGCCAAC
* * *
27048247 T-CATCTGGGCTTAAGACTTCATTGAGGCCAGC
1 TAAAT-TGGGCTTAAAACTTCATTGAGGCCAAC
27048279 TAAATTGGGCTT
1 TAAATTGGGCTT
27048291 GAATTTTTTC
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
31 2 0.06
32 32 0.89
33 2 0.06
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (32 bp):
TAAATTGGGCTTAAAACTTCATTGAGGCCAAC
Found at i:27049703 original size:13 final size:13
Alignment explanation
Indices: 27049672--27049696 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27049662 TGTCATAACC
27049672 ATTTTTTTCTTTA
1 ATTTTTTTCTTTA
27049685 ATTTTTTTCTTT
1 ATTTTTTTCTTT
27049697 TTTTTTTGAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.08, G:0.00, T:0.80
Consensus pattern (13 bp):
ATTTTTTTCTTTA
Found at i:27050378 original size:15 final size:16
Alignment explanation
Indices: 27050358--27050387 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
27050348 AGACTCAAAA
27050358 CTTTTTT-TTTTTTTC
1 CTTTTTTATTTTTTTC
27050373 CTTTTTTATTTTTTT
1 CTTTTTTATTTTTTT
27050388 TTTATTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (16 bp):
CTTTTTTATTTTTTTC
Found at i:27050388 original size:11 final size:11
Alignment explanation
Indices: 27050359--27050398 Score: 55
Period size: 11 Copynumber: 3.6 Consensus size: 11
27050349 GACTCAAAAC
27050359 TTTTTTTTTT-
1 TTTTTTTTTTA
*
27050369 TTTCCTTTTTTA
1 TTT-TTTTTTTA
27050381 TTTTTTTTTTA
1 TTTTTTTTTTA
27050392 TTTTTTT
1 TTTTTTT
27050399 AAGGCATTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
10 3 0.12
11 20 0.77
12 3 0.12
ACGTcount: A:0.05, C:0.05, G:0.00, T:0.90
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:27050396 original size:19 final size:19
Alignment explanation
Indices: 27050362--27050399 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
27050352 TCAAAACTTT
*
27050362 TTTTTTTTTTCCTTTTTTA
1 TTTTTTTTTTACTTTTTTA
*
27050381 TTTTTTTTTTATTTTTTTA
1 TTTTTTTTTTACTTTTTTA
27050400 AGGCATTTTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.08, C:0.05, G:0.00, T:0.87
Consensus pattern (19 bp):
TTTTTTTTTTACTTTTTTA
Found at i:27052082 original size:4 final size:4
Alignment explanation
Indices: 27052056--27052122 Score: 73
Period size: 4 Copynumber: 16.8 Consensus size: 4
27052046 TGCATTATAT
* * * **
27052056 TGAA TGAA T-ATA TAAA TGGA TGAA TGAA TGAA TGAA TGAA TGCA CAAA
1 TGAA TGAA TGA-A TGAA TGAA TGAA TGAA TGAA TGAA TGAA TGAA TGAA
27052104 TGAA TGAA TGAA TGAA TGA
1 TGAA TGAA TGAA TGAA TGA
27052123 CCGAATGCAT
Statistics
Matches: 52, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
3 1 0.02
4 50 0.96
5 1 0.02
ACGTcount: A:0.49, C:0.03, G:0.22, T:0.25
Consensus pattern (4 bp):
TGAA
Found at i:27064926 original size:21 final size:20
Alignment explanation
Indices: 27064892--27064936 Score: 63
Period size: 21 Copynumber: 2.2 Consensus size: 20
27064882 ACATCTTACT
27064892 TTTTATTTTATCTTTAATAA
1 TTTTATTTTATCTTTAATAA
* *
27064912 TTTTATCTTTTTCTTTACTAA
1 TTTTAT-TTTATCTTTAATAA
27064933 TTTT
1 TTTT
27064937 TGAAACATAG
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
20 6 0.27
21 16 0.73
ACGTcount: A:0.22, C:0.09, G:0.00, T:0.69
Consensus pattern (20 bp):
TTTTATTTTATCTTTAATAA
Found at i:27067405 original size:15 final size:15
Alignment explanation
Indices: 27067387--27067443 Score: 55
Period size: 15 Copynumber: 3.8 Consensus size: 15
27067377 TTTCTTTTGG
*
27067387 CTTTTTTTAATTTCT
1 CTTTATTTAATTTCT
27067402 CTTTATTTAATTTCT
1 CTTTATTTAATTTCT
*
27067417 -TTGATTTAAATTT-T
1 CTTTATTT-AATTTCT
*
27067431 ATTTACTTTAATT
1 CTTTA-TTTAATT
27067444 GATTTTTCTC
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
14 7 0.19
15 26 0.72
16 3 0.08
ACGTcount: A:0.23, C:0.09, G:0.02, T:0.67
Consensus pattern (15 bp):
CTTTATTTAATTTCT
Found at i:27074534 original size:36 final size:36
Alignment explanation
Indices: 27074493--27074563 Score: 88
Period size: 36 Copynumber: 2.0 Consensus size: 36
27074483 ATATTGATTC
** *
27074493 TATGCATTGCATTCATTACACATATTTCATGCATTA
1 TATGCATCACATTCATTACACATATTACATGCATTA
* **
27074529 TATGCATCACATTCATTCCATGTATTACATGCATT
1 TATGCATCACATTCATTACACATATTACATGCATT
27074564 GCTTATATTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 29 1.00
ACGTcount: A:0.30, C:0.21, G:0.08, T:0.41
Consensus pattern (36 bp):
TATGCATCACATTCATTACACATATTACATGCATTA
Found at i:27074756 original size:23 final size:23
Alignment explanation
Indices: 27074722--27074786 Score: 80
Period size: 23 Copynumber: 2.9 Consensus size: 23
27074712 TTAATATCAC
27074722 TTTC-TAAAACCTTCAGGTGAAT
1 TTTCTTAAAACCTTCAGGTGAAT
*
27074744 TTTCTTAAAACCTCCAGGT-AAT
1 TTTCTTAAAACCTTCAGGTGAAT
* *
27074766 CTTCTTAAAAACCTTTAGGTG
1 TTTCTT-AAAACCTTCAGGTG
27074787 TTATCTTTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
22 12 0.33
23 24 0.67
ACGTcount: A:0.31, C:0.20, G:0.12, T:0.37
Consensus pattern (23 bp):
TTTCTTAAAACCTTCAGGTGAAT
Found at i:27076870 original size:15 final size:16
Alignment explanation
Indices: 27076852--27076903 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 16
27076842 TTTGGTAGTT
*
27076852 TTTAAATTTTCTTTG-
1 TTTAAATTTTATTTGA
27076867 TTT-AA-TTTATTTGA
1 TTTAAATTTTATTTGA
27076881 TTTAAATTTTATTT-A
1 TTTAAATTTTATTTGA
*
27076896 TTTTAATT
1 TTTAAATT
27076904 GATTTTTCTC
Statistics
Matches: 32, Mismatches: 2, Indels: 6
0.80 0.05 0.15
Matches are distributed among these distances:
13 7 0.22
14 5 0.16
15 13 0.41
16 7 0.22
ACGTcount: A:0.27, C:0.02, G:0.04, T:0.67
Consensus pattern (16 bp):
TTTAAATTTTATTTGA
Found at i:27077108 original size:97 final size:97
Alignment explanation
Indices: 27077007--27077220 Score: 249
Period size: 97 Copynumber: 2.2 Consensus size: 97
27076997 GAATTCTACT
* * *
27077007 AAACTATTGGAAAATTTCAAAATAAA-ATTTTAT-TAAAAAT-AA-ATTTTCAATCCTACCAATT
1 AAACTATTGGAAAATTT---AATAAATATTTTATGAAAAAATCAAGATTTTCAATCATACCAAGT
* *
27077068 TATT-AAAGGATTTAAATCTCTAAATTAAGTCTTATC
63 TATTGAAA-GATTTAAATCTC-AAATTAAATATTATC
* * * *
27077104 AAACTATTGGAGAACTTAATAAATTTTTTATGAAAAAATCAAGTTTTTCAATCATACCAAGTTAT
1 AAACTATTGGAAAATTTAATAAATATTTTATGAAAAAATCAAGATTTTCAATCATACCAAGTTAT
*
27077169 TGGAAGATTTAAATCTCAAATTAAATATTATC
66 TGAAAGATTTAAATCTCAAATTAAATATTATC
*
27077201 AAACTATTGGAAGATTTAAT
1 AAACTATTGGAAAATTTAAT
27077221 GAGTTTTCTT
Statistics
Matches: 99, Mismatches: 13, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
94 6 0.06
95 6 0.06
96 6 0.06
97 47 0.47
98 32 0.32
99 2 0.02
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.37
Consensus pattern (97 bp):
AAACTATTGGAAAATTTAATAAATATTTTATGAAAAAATCAAGATTTTCAATCATACCAAGTTAT
TGAAAGATTTAAATCTCAAATTAAATATTATC
Found at i:27078391 original size:2 final size:2
Alignment explanation
Indices: 27078386--27078417 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
27078376 TCTCTCTCTT
27078386 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
27078418 AAGATTTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:27078573 original size:2 final size:2
Alignment explanation
Indices: 27078566--27078591 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
27078556 GAATTCCTCT
27078566 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
27078592 GTTAATATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:27079168 original size:11 final size:11
Alignment explanation
Indices: 27079152--27079230 Score: 54
Period size: 11 Copynumber: 7.1 Consensus size: 11
27079142 ATAGATTTTA
*
27079152 ATATATATGAT
1 ATATATATAAT
27079163 ATATATATAAT
1 ATATATATAAT
* *
27079174 ATGTATTTAAT
1 ATATATATAAT
*
27079185 CTA-ATATAA-
1 ATATATATAAT
* *
27079194 ATAGATTTTAAT
1 ATATA-TATAAT
27079206 ATATATGATATAT
1 ATATAT-ATA-AT
*
27079219 ATATATGTAAT
1 ATATATATAAT
27079230 A
1 A
27079231 CGTATTTAAT
Statistics
Matches: 52, Mismatches: 11, Indels: 10
0.71 0.15 0.14
Matches are distributed among these distances:
9 2 0.04
10 6 0.12
11 28 0.54
12 8 0.15
13 8 0.15
ACGTcount: A:0.47, C:0.01, G:0.06, T:0.46
Consensus pattern (11 bp):
ATATATATAAT
Found at i:27081003 original size:2 final size:2
Alignment explanation
Indices: 27080901--27080987 Score: 102
Period size: 2 Copynumber: 43.5 Consensus size: 2
27080891 TGTGCGTGTG
* * *
27080901 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TG TG TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * * * *
27080943 TA TA TA TA TA TT TA TA TG TA TA TA TA TA CA TA TA AA TA GA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
27080985 TA T
1 TA T
27080988 TTAAAAAATT
Statistics
Matches: 73, Mismatches: 12, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
2 73 1.00
ACGTcount: A:0.45, C:0.01, G:0.06, T:0.48
Consensus pattern (2 bp):
TA
Found at i:27082420 original size:10 final size:10
Alignment explanation
Indices: 27082405--27082551 Score: 79
Period size: 10 Copynumber: 14.8 Consensus size: 10
27082395 CAAGTTACTA
27082405 TAAAAAATTT
1 TAAAAAATTT
27082415 TAAAAAA-TT
1 TAAAAAATTT
27082424 TAAAAAATTT
1 TAAAAAATTT
* *
27082434 CTCAAAAATAT
1 -TAAAAAATTT
* *
27082445 TATAAATTTT
1 TAAAAAATTT
**
27082455 TCTAAAATTAT
1 TAAAAAATT-T
*
27082466 AAAAAAATTT
1 TAAAAAATTT
*
27082476 T--AAAATTC
1 TAAAAAATTT
*
27082484 T-AAAAGTTT
1 TAAAAAATTT
27082493 T-AAAAATTT
1 TAAAAAATTT
* *
27082502 TCTAAAAACTT
1 T-AAAAAATTT
* *
27082513 AAAAAAATTA
1 TAAAAAATTT
* *
27082523 TAAACAATTC
1 TAAAAAATTT
*
27082533 TACAAAATTTT
1 TA-AAAAATTT
27082544 TAAAAAAT
1 TAAAAAAT
27082552 ATATCAAAAA
Statistics
Matches: 102, Mismatches: 28, Indels: 14
0.71 0.19 0.10
Matches are distributed among these distances:
8 7 0.07
9 23 0.23
10 43 0.42
11 29 0.28
ACGTcount: A:0.56, C:0.06, G:0.01, T:0.37
Consensus pattern (10 bp):
TAAAAAATTT
Found at i:27082539 original size:21 final size:21
Alignment explanation
Indices: 27082515--27082568 Score: 56
Period size: 21 Copynumber: 2.6 Consensus size: 21
27082505 AAAAACTTAA
* *
27082515 AAAAATTATAAACAAT-TCTAC
1 AAAAATTATAAAAAATATAT-C
* *
27082536 AAAATTTTTAAAAAATATATC
1 AAAAATTATAAAAAATATATC
27082557 AAAAATTATAAA
1 AAAAATTATAAA
27082569 TATTTCTCTA
Statistics
Matches: 26, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 24 0.92
22 2 0.08
ACGTcount: A:0.61, C:0.07, G:0.00, T:0.31
Consensus pattern (21 bp):
AAAAATTATAAAAAATATATC
Found at i:27082691 original size:18 final size:18
Alignment explanation
Indices: 27082657--27082696 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
27082647 TTTTAATTTA
27082657 TAAATATTCAAAAAAATT
1 TAAATATTCAAAAAAATT
*
27082675 TAAAT-TTCTAAACAAATT
1 TAAATATTC-AAAAAAATT
27082693 TAAA
1 TAAA
27082697 AAATTCCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 3 0.15
18 17 0.85
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (18 bp):
TAAATATTCAAAAAAATT
Found at i:27082808 original size:17 final size:17
Alignment explanation
Indices: 27082788--27082822 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
27082778 AAAGCTTTTA
*
27082788 AAATTTTTTGAAAATTT
1 AAATTGTTTGAAAATTT
27082805 AAATTGTTTGAAAATTT
1 AAATTGTTTGAAAATTT
27082822 A
1 A
27082823 GAAACATTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.43, C:0.00, G:0.09, T:0.49
Consensus pattern (17 bp):
AAATTGTTTGAAAATTT
Found at i:27082899 original size:20 final size:21
Alignment explanation
Indices: 27082858--27082903 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 21
27082848 TTAAAAAATT
*
27082858 AAAATTTTAATAAAAATCCTA
1 AAAATTTCAATAAAAATCCTA
27082879 AAAATTTCAA-AAACAAT-CTA
1 AAAATTTCAATAAA-AATCCTA
27082899 AAAAT
1 AAAAT
27082904 CCAAAAAATA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
20 11 0.48
21 12 0.52
ACGTcount: A:0.61, C:0.11, G:0.00, T:0.28
Consensus pattern (21 bp):
AAAATTTCAATAAAAATCCTA
Found at i:27083229 original size:29 final size:29
Alignment explanation
Indices: 27083196--27083264 Score: 77
Period size: 29 Copynumber: 2.4 Consensus size: 29
27083186 TTTTTAGAAT
**
27083196 TTTTAAAATTTTTTGCATATATTTT-AAGC
1 TTTTAAAATTTTTTAAATAT-TTTTAAAGC
* * *
27083225 TTTTATATTTTTTTAAATATTTTTAAAGT
1 TTTTAAAATTTTTTAAATATTTTTAAAGC
27083254 TTTTAAAATTT
1 TTTTAAAATTT
27083265 ATTACATTTT
Statistics
Matches: 32, Mismatches: 7, Indels: 2
0.78 0.17 0.05
Matches are distributed among these distances:
28 4 0.12
29 28 0.88
ACGTcount: A:0.32, C:0.03, G:0.04, T:0.61
Consensus pattern (29 bp):
TTTTAAAATTTTTTAAATATTTTTAAAGC
Found at i:27083360 original size:9 final size:9
Alignment explanation
Indices: 27083346--27083381 Score: 54
Period size: 9 Copynumber: 3.9 Consensus size: 9
27083336 AAAAAAATTT
27083346 ATTTTTTTA
1 ATTTTTTTA
27083355 ATTTTTTTA
1 ATTTTTTTA
*
27083364 ATTTTGTATA
1 ATTTT-TTTA
27083374 ATTTTTTT
1 ATTTTTTT
27083382 TTTTGGAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.67
10 8 0.33
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (9 bp):
ATTTTTTTA
Found at i:27083385 original size:17 final size:18
Alignment explanation
Indices: 27083353--27083396 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
27083343 TTTATTTTTT
*
27083353 TAATTTTTTTAATTTTGTA
1 TAATTTTTTT-ATTTTGGA
27083372 TAATTTTTTT-TTTTGGA
1 TAATTTTTTTATTTTGGA
*
27083389 AAATTTTT
1 TAATTTTT
27083397 GGATTATTGT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 13 0.57
19 10 0.43
ACGTcount: A:0.25, C:0.00, G:0.07, T:0.68
Consensus pattern (18 bp):
TAATTTTTTTATTTTGGA
Found at i:27083472 original size:31 final size:31
Alignment explanation
Indices: 27083433--27083498 Score: 91
Period size: 30 Copynumber: 2.2 Consensus size: 31
27083423 TTTAATATCC
* *
27083433 TAAAAAAATTTTA-AATTATTTTAGGAT-TTT
1 TAAAAAAAATTTAGAATT-TTTTAGAATATTT
27083463 TAAAAAAAATTTAGAATTTTTTAGAATATTT
1 TAAAAAAAATTTAGAATTTTTTAGAATATTT
27083494 TAAAA
1 TAAAA
27083499 TTTTTTGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
30 20 0.62
31 12 0.38
ACGTcount: A:0.48, C:0.00, G:0.06, T:0.45
Consensus pattern (31 bp):
TAAAAAAAATTTAGAATTTTTTAGAATATTT
Found at i:27083487 original size:10 final size:10
Alignment explanation
Indices: 27083472--27083524 Score: 63
Period size: 10 Copynumber: 5.3 Consensus size: 10
27083462 TTAAAAAAAA
27083472 TTTAGAATTT
1 TTTAGAATTT
*
27083482 TTTAGAATAT
1 TTTAGAATTT
*
27083492 TTTAAAATTT
1 TTTAGAATTT
*
27083502 TTT-GAAATT
1 TTTAGAATTT
27083511 TTTAGAACTTT
1 TTTAGAA-TTT
27083522 TTT
1 TTT
27083525 TTATTTTTTT
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
9 7 0.20
10 23 0.66
11 5 0.14
ACGTcount: A:0.32, C:0.02, G:0.08, T:0.58
Consensus pattern (10 bp):
TTTAGAATTT
Found at i:27083495 original size:20 final size:20
Alignment explanation
Indices: 27083449--27083524 Score: 66
Period size: 20 Copynumber: 3.8 Consensus size: 20
27083439 AATTTTAAAT
* * *
27083449 TATTTTAGGATTTTTAAAAA
1 TATTTTAGAATTTTTTAGAA
* *
27083469 AAATTTAGAATTTTTTAGAA
1 TATTTTAGAATTTTTTAGAA
*
27083489 TATTTTAAAATTTTTT-GAA
1 TATTTTAGAATTTTTTAGAA
27083508 -ATTTTTAGAACTTTTTT
1 TA-TTTTAGAA-TTTTTT
27083525 TTATTTTTTT
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
18 1 0.02
19 10 0.22
20 34 0.76
ACGTcount: A:0.37, C:0.01, G:0.08, T:0.54
Consensus pattern (20 bp):
TATTTTAGAATTTTTTAGAA
Found at i:27083543 original size:10 final size:10
Alignment explanation
Indices: 27083477--27083546 Score: 52
Period size: 10 Copynumber: 6.9 Consensus size: 10
27083467 AAAAATTTAG
27083477 AATTTTTT-A
1 AATTTTTTGA
* *
27083486 GAATATTTTAA
1 -AATTTTTTGA
27083497 AATTTTTTGA
1 AATTTTTTGA
*
27083507 AATTTTTAGA
1 AATTTTTTGA
* *
27083517 ACTTTTTTTTA
1 A-ATTTTTTGA
**
27083528 TTTTTTTTGA
1 AATTTTTTGA
27083538 AATTTTTTG
1 AATTTTTTG
27083547 TTAATGATAA
Statistics
Matches: 47, Mismatches: 11, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
10 40 0.85
11 7 0.15
ACGTcount: A:0.29, C:0.01, G:0.07, T:0.63
Consensus pattern (10 bp):
AATTTTTTGA
Found at i:27084531 original size:18 final size:18
Alignment explanation
Indices: 27084508--27084543 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
27084498 CAACTAACAA
27084508 CTCTCT-TTTTTCTTTTTT
1 CTCTCTATTTTT-TTTTTT
27084526 CTCTCTATTTTTTTTTTT
1 CTCTCTATTTTTTTTTTT
27084544 TTGGTTCTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (18 bp):
CTCTCTATTTTTTTTTTT
Found at i:27084536 original size:20 final size:19
Alignment explanation
Indices: 27084508--27084544 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
27084498 CAACTAACAA
*
27084508 CTCTCT-TTTTTCTTTTTT
1 CTCTCTATTTTTTTTTTTT
27084526 CTCTCTATTTTTTTTTTTT
1 CTCTCTATTTTTTTTTTTT
27084545 TGGTTCTTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (19 bp):
CTCTCTATTTTTTTTTTTT
Found at i:27084545 original size:20 final size:20
Alignment explanation
Indices: 27084508--27084544 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
27084498 CAACTAACAA
*
27084508 CTCTCTTTTTTCTTTTTTCT
1 CTCTATTTTTTCTTTTTTCT
27084528 CTCTATTTTTT-TTTTTT
1 CTCTATTTTTTCTTTTTT
27084545 TGGTTCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
19 6 0.38
20 10 0.62
ACGTcount: A:0.03, C:0.19, G:0.00, T:0.78
Consensus pattern (20 bp):
CTCTATTTTTTCTTTTTTCT
Found at i:27087522 original size:59 final size:60
Alignment explanation
Indices: 27087450--27087569 Score: 215
Period size: 59 Copynumber: 2.0 Consensus size: 60
27087440 ATTTTGATTA
* *
27087450 TAATGATTTCTTAATTGATCTTATTATTCATTTGGATATCCCTGGATTTAGTAGG-ATGT
1 TAATGATTTCTTAATTGATCTTATTATTCATCTGGATATCCCTAGATTTAGTAGGCATGT
27087509 TAATGATTTCTTAATTGATCTTATTATTCATCTGGATATCCCTAGATTTAGTAGGCATGT
1 TAATGATTTCTTAATTGATCTTATTATTCATCTGGATATCCCTAGATTTAGTAGGCATGT
27087569 T
1 T
27087570 TTTCTTATTA
Statistics
Matches: 58, Mismatches: 2, Indels: 1
0.95 0.03 0.02
Matches are distributed among these distances:
59 53 0.91
60 5 0.09
ACGTcount: A:0.26, C:0.12, G:0.16, T:0.47
Consensus pattern (60 bp):
TAATGATTTCTTAATTGATCTTATTATTCATCTGGATATCCCTAGATTTAGTAGGCATGT
Found at i:27089719 original size:50 final size:50
Alignment explanation
Indices: 27089613--27089750 Score: 161
Period size: 50 Copynumber: 2.8 Consensus size: 50
27089603 TAAATACTCA
* * *
27089613 CCAAATAATGCAAATGCATGGGT-CAAACAATTATGCAATTTATAAATTCC
1 CCAAATGATGCAAATGCAT-GATCCAAACAATTATGCAATTTATAAATTAC
* * *
27089663 CCAAATGGTGCAAATGCATGATCCAAACAATTATGTAGTTTATAAATTAC
1 CCAAATGATGCAAATGCATGATCCAAACAATTATGCAATTTATAAATTAC
** * * *
27089713 TTAAATGATGCAAATTCATGATCCAAACTATCATGCAA
1 CCAAATGATGCAAATGCATGATCCAAACAATTATGCAA
27089751 ATGCAATTGT
Statistics
Matches: 73, Mismatches: 14, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
49 2 0.03
50 71 0.97
ACGTcount: A:0.41, C:0.17, G:0.12, T:0.29
Consensus pattern (50 bp):
CCAAATGATGCAAATGCATGATCCAAACAATTATGCAATTTATAAATTAC
Found at i:27091116 original size:22 final size:23
Alignment explanation
Indices: 27091086--27091132 Score: 69
Period size: 22 Copynumber: 2.0 Consensus size: 23
27091076 TCTAAAGTGA
27091086 ATATAAAATATGGCTA-TTTATC
1 ATATAAAATATGGCTACTTTATC
*
27091108 ATATTAAATATGGCTACCTTTATC
1 ATATAAAATATGGCTA-CTTTATC
27091132 A
1 A
27091133 AAAAGCAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 15 0.68
24 7 0.32
ACGTcount: A:0.38, C:0.13, G:0.09, T:0.40
Consensus pattern (23 bp):
ATATAAAATATGGCTACTTTATC
Found at i:27092080 original size:10 final size:9
Alignment explanation
Indices: 27092060--27092099 Score: 71
Period size: 9 Copynumber: 4.3 Consensus size: 9
27092050 AATAACAATT
27092060 AAAAAATAA
1 AAAAAATAA
27092069 AAAAAATAA
1 AAAAAATAA
27092078 AAAAAATAAA
1 AAAAAAT-AA
27092088 AAAAAATAA
1 AAAAAATAA
27092097 AAA
1 AAA
27092100 GAAAAACTAC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
9 21 0.70
10 9 0.30
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAATAA
Found at i:27092083 original size:18 final size:19
Alignment explanation
Indices: 27092060--27092099 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
27092050 AATAACAATT
27092060 AAAAAAT-AAAAAAAATAA
1 AAAAAATAAAAAAAAATAA
27092078 AAAAAATAAAAAAAAATAA
1 AAAAAATAAAAAAAAATAA
27092097 AAA
1 AAA
27092100 GAAAAACTAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 7 0.33
19 14 0.67
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (19 bp):
AAAAAATAAAAAAAAATAA
Found at i:27093767 original size:19 final size:19
Alignment explanation
Indices: 27093735--27093804 Score: 63
Period size: 20 Copynumber: 3.6 Consensus size: 19
27093725 TTTTCTATTT
*
27093735 AAAAAATAAAAAAT-AAATAG
1 AAAAAAT-ATAAATGAAA-AG
27093755 AAAAAATATAAATGAAAAG
1 AAAAAATATAAATGAAAAG
* *
27093774 AAGAAAATATGAAAGGAAAGG
1 AA-AAAATAT-AAATGAAAAG
27093795 AAAAAA-ATAA
1 AAAAAATATAA
27093805 TCAAGTTATA
Statistics
Matches: 44, Mismatches: 3, Indels: 8
0.80 0.05 0.15
Matches are distributed among these distances:
18 2 0.05
19 11 0.25
20 21 0.48
21 10 0.23
ACGTcount: A:0.74, C:0.00, G:0.13, T:0.13
Consensus pattern (19 bp):
AAAAAATATAAATGAAAAG
Found at i:27093780 original size:21 final size:21
Alignment explanation
Indices: 27093755--27093803 Score: 64
Period size: 21 Copynumber: 2.4 Consensus size: 21
27093745 AAATAAATAG
*
27093755 AAAAAATAT-AAATGAAAAGA
1 AAAAAATATGAAAGGAAAAGA
* *
27093775 AGAAAATATGAAAGGAAAGGA
1 AAAAAATATGAAAGGAAAAGA
27093796 AAAAAATA
1 AAAAAATA
27093804 ATCAAGTTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 8 0.33
21 16 0.67
ACGTcount: A:0.71, C:0.00, G:0.16, T:0.12
Consensus pattern (21 bp):
AAAAAATATGAAAGGAAAAGA
Found at i:27095189 original size:2 final size:2
Alignment explanation
Indices: 27095182--27095214 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
27095172 CATCAACCGA
27095182 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27095215 AAAGATTCAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:27095522 original size:19 final size:18
Alignment explanation
Indices: 27095490--27095525 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
27095480 TCATTGATTT
27095490 TTTATATGAATATAATTA
1 TTTATATGAATATAATTA
*
27095508 TTTATTATGATTATAATT
1 TTTA-TATGAATATAATT
27095526 TCTCTTATAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (18 bp):
TTTATATGAATATAATTA
Found at i:27100011 original size:30 final size:29
Alignment explanation
Indices: 27099960--27100021 Score: 72
Period size: 30 Copynumber: 2.1 Consensus size: 29
27099950 AATTGTTTAA
*
27099960 TTTTTATTTTATATATATTATTAATATTAT
1 TTTTTATTTTATATATATTATT-ATACTAT
* *
27099990 TTTTTATTTT-TTTATTTTTATTATACTAT
1 TTTTTATTTTATATA-TATTATTATACTAT
27100019 TTT
1 TTT
27100022 ATGTGTATAT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
29 12 0.43
30 16 0.57
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.73
Consensus pattern (29 bp):
TTTTTATTTTATATATATTATTATACTAT
Found at i:27100052 original size:45 final size:42
Alignment explanation
Indices: 27099999--27100094 Score: 104
Period size: 45 Copynumber: 2.2 Consensus size: 42
27099989 TTTTTTATTT
27099999 TTTTATTTTTATTATACTATTT-TATGTGTATATATATATATATCA
1 TTTTATTTTTATTATACT-TTTATAT-T-TATATATATATATAT-A
* * * * *
27100044 TTTTATTTTTGTTGTCCTTTTATATTTATATTTATATTTATA
1 TTTTATTTTTATTATACTTTTATATTTATATATATATATATA
27100086 TTTTATTTT
1 TTTTATTTT
27100095 ATTTTTTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
42 10 0.22
43 13 0.29
44 4 0.09
45 18 0.40
ACGTcount: A:0.25, C:0.04, G:0.04, T:0.67
Consensus pattern (42 bp):
TTTTATTTTTATTATACTTTTATATTTATATATATATATATA
Found at i:27100071 original size:6 final size:6
Alignment explanation
Indices: 27100062--27100098 Score: 60
Period size: 6 Copynumber: 6.5 Consensus size: 6
27100052 TTGTTGTCCT
27100062 TTTATA TTTATA TTTATA TTTATA TTT-TA TTT-TA TTT
1 TTTATA TTTATA TTTATA TTTATA TTTATA TTTATA TTT
27100099 TTTTATGCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
5 10 0.32
6 21 0.68
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (6 bp):
TTTATA
Found at i:27103958 original size:9 final size:9
Alignment explanation
Indices: 27103937--27103966 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
27103927 TTCAAAAAAA
27103937 TTTTATA-T
1 TTTTATATT
27103945 TTTTATATT
1 TTTTATATT
27103954 TTTTATATT
1 TTTTATATT
27103963 TTTT
1 TTTT
27103967 TGGTTTAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (9 bp):
TTTTATATT
Found at i:27104957 original size:23 final size:23
Alignment explanation
Indices: 27104930--27104991 Score: 72
Period size: 24 Copynumber: 2.7 Consensus size: 23
27104920 CTATTATCTT
* *
27104930 AAAATAAAATAAATACTA-ATAAA
1 AAAATAAAATAAAAACCAGA-AAA
*
27104953 AAAATCAAAATAAAAACCAGAATA
1 AAAAT-AAAATAAAAACCAGAAAA
27104977 AAAATAAAATAAAAA
1 AAAATAAAATAAAAA
27104992 TAAATAAAAG
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
23 15 0.44
24 18 0.53
25 1 0.03
ACGTcount: A:0.76, C:0.06, G:0.02, T:0.16
Consensus pattern (23 bp):
AAAATAAAATAAAAACCAGAAAA
Found at i:27105445 original size:22 final size:22
Alignment explanation
Indices: 27105420--27105462 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
27105410 TAATATTTTG
27105420 GTTTATTTCT-TTTTTACATTTA
1 GTTTATTTCTATTTTTA-ATTTA
*
27105442 GTTTATTTTTATTTTTAATTT
1 GTTTATTTCTATTTTTAATTT
27105463 TTATTTCAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 13 0.68
23 6 0.32
ACGTcount: A:0.19, C:0.05, G:0.05, T:0.72
Consensus pattern (22 bp):
GTTTATTTCTATTTTTAATTTA
Found at i:27110726 original size:27 final size:27
Alignment explanation
Indices: 27110696--27110747 Score: 77
Period size: 27 Copynumber: 1.9 Consensus size: 27
27110686 AAATTCTTTT
*
27110696 AAATTCATAATCTCAAAAAATCTGATA
1 AAATTCATAACCTCAAAAAATCTGATA
* *
27110723 AAATTCGTAACCTTAAAAAATCTGA
1 AAATTCATAACCTCAAAAAATCTGA
27110748 CAATATACGT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 22 1.00
ACGTcount: A:0.50, C:0.15, G:0.06, T:0.29
Consensus pattern (27 bp):
AAATTCATAACCTCAAAAAATCTGATA
Found at i:27110765 original size:27 final size:27
Alignment explanation
Indices: 27110710--27110765 Score: 67
Period size: 27 Copynumber: 2.1 Consensus size: 27
27110700 TCATAATCTC
* * **
27110710 AAAAAATCTGATAAAATTCGTAACCTT
1 AAAAAATCTGACAAAATACGTAAAATT
*
27110737 AAAAAATCTGACAATATACGTAAAATT
1 AAAAAATCTGACAAAATACGTAAAATT
27110764 AA
1 AA
27110766 TATTTCATCG
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.54, C:0.12, G:0.07, T:0.27
Consensus pattern (27 bp):
AAAAAATCTGACAAAATACGTAAAATT
Found at i:27111838 original size:3 final size:3
Alignment explanation
Indices: 27111830--27111862 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
27111820 TCACCGTTTA
27111830 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
27111863 GCTATTTGTT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
ATT
Found at i:27113858 original size:17 final size:17
Alignment explanation
Indices: 27113838--27113880 Score: 54
Period size: 17 Copynumber: 2.6 Consensus size: 17
27113828 TTAATTTAAC
*
27113838 AAAAAAAGCA-TAAAAA
1 AAAAAAAGAATTAAAAA
27113854 GAAAAAAA-AATTAAAAA
1 -AAAAAAAGAATTAAAAA
27113871 AAAAAAAGAA
1 AAAAAAAGAA
27113881 AATACAAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
16 8 0.35
17 15 0.65
ACGTcount: A:0.84, C:0.02, G:0.07, T:0.07
Consensus pattern (17 bp):
AAAAAAAGAATTAAAAA
Found at i:27113889 original size:19 final size:18
Alignment explanation
Indices: 27113849--27113914 Score: 55
Period size: 18 Copynumber: 3.6 Consensus size: 18
27113839 AAAAAAGCAT
*
27113849 AAAAAGAAAAAAAAATTA
1 AAAAAGAAAAAAAAAATA
27113867 AAAAA-AAAAAAGAAAATA
1 AAAAAGAAAAAA-AAAATA
* * *
27113885 CAAAAGATACAAAATACA-A
1 AAAAAGA-A-AAAAAAAATA
27113904 AAAAAGAAAAA
1 AAAAAGAAAAA
27113915 TGGAGCTCAT
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
17 9 0.23
18 15 0.38
19 8 0.21
20 3 0.08
21 4 0.10
ACGTcount: A:0.82, C:0.05, G:0.06, T:0.08
Consensus pattern (18 bp):
AAAAAGAAAAAAAAAATA
Found at i:27113915 original size:16 final size:15
Alignment explanation
Indices: 27113871--27113913 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
27113861 AAATTAAAAA
27113871 AAAAAAAGAAAATAC
1 AAAAAAAGAAAATAC
* *
27113886 AAAAGATACAAAATAC
1 AAAA-AAAGAAAATAC
27113902 AAAAAAAGAAAA
1 AAAAAAAGAAAA
27113914 ATGGAGCTCA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
15 10 0.43
16 13 0.57
ACGTcount: A:0.79, C:0.07, G:0.07, T:0.07
Consensus pattern (15 bp):
AAAAAAAGAAAATAC
Found at i:27114123 original size:22 final size:22
Alignment explanation
Indices: 27114098--27114159 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
27114088 CTTAAATAAA
27114098 AATATAAAATATTAACATTATT
1 AATATAAAATATTAACATTATT
* * *
27114120 AATATAATACATAAT-ATATAATT
1 AATATAA-A-ATATTAACATTATT
27114143 AA-AT-AAATATTAACATT
1 AATATAAAATATTAACATT
27114160 TATACCTTTA
Statistics
Matches: 31, Mismatches: 6, Indels: 8
0.69 0.13 0.18
Matches are distributed among these distances:
19 4 0.13
20 4 0.13
21 1 0.03
22 9 0.29
23 9 0.29
24 4 0.13
ACGTcount: A:0.56, C:0.05, G:0.00, T:0.39
Consensus pattern (22 bp):
AATATAAAATATTAACATTATT
Found at i:27114466 original size:15 final size:14
Alignment explanation
Indices: 27114448--27114495 Score: 53
Period size: 15 Copynumber: 3.4 Consensus size: 14
27114438 CTTATCTAAT
27114448 AAAAATAATAAACAA
1 AAAAATAATAAA-AA
*
27114463 AAAAAT-AGAAAAA
1 AAAAATAATAAAAA
*
27114476 ATAAATAATTAAAAA
1 AAAAATAA-TAAAAA
27114491 AAAAA
1 AAAAA
27114496 AAACCTCTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
13 7 0.26
14 5 0.19
15 15 0.56
ACGTcount: A:0.81, C:0.02, G:0.02, T:0.15
Consensus pattern (14 bp):
AAAAATAATAAAAA
Found at i:27115048 original size:31 final size:31
Alignment explanation
Indices: 27115011--27115073 Score: 108
Period size: 31 Copynumber: 2.0 Consensus size: 31
27115001 ATATTTGGTC
*
27115011 ATATTTTTTAATAATAATATATATGTATAAA
1 ATATTTTTTAATAATAATATATATGCATAAA
*
27115042 ATATTTTTTAATAATAATGTATATGCATAAA
1 ATATTTTTTAATAATAATATATATGCATAAA
27115073 A
1 A
27115074 AATAAGTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.48, C:0.02, G:0.05, T:0.46
Consensus pattern (31 bp):
ATATTTTTTAATAATAATATATATGCATAAA
Found at i:27117137 original size:75 final size:75
Alignment explanation
Indices: 27117014--27117160 Score: 251
Period size: 75 Copynumber: 2.0 Consensus size: 75
27117004 CATTTGTTCT
*
27117014 CTTTTTGATTGGGACATGAAAACTACAAGCCAGGCCATTATTCAACTATAGTTGTTGCCTTCAAC
1 CTTTTTGATTGAGACATGAAAACTACAAGCCAGGCCATTATTCAACTATAGTTGTTGCCTTCAAC
27117079 ATTGCAGGCC
66 ATTGCAGGCC
* *
27117089 CTTTTTGATTGAGACATGAAAACT-CTAAGCCAGGCCATTATTCAACTATAGTTTTTGCTTTCAA
1 CTTTTTGATTGAGACATGAAAACTAC-AAGCCAGGCCATTATTCAACTATAGTTGTTGCCTTCAA
27117153 CATTGCAG
65 CATTGCAG
27117161 ACTTTTTCTT
Statistics
Matches: 68, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
74 1 0.01
75 67 0.99
ACGTcount: A:0.29, C:0.21, G:0.17, T:0.33
Consensus pattern (75 bp):
CTTTTTGATTGAGACATGAAAACTACAAGCCAGGCCATTATTCAACTATAGTTGTTGCCTTCAAC
ATTGCAGGCC
Found at i:27117698 original size:27 final size:26
Alignment explanation
Indices: 27117636--27117704 Score: 70
Period size: 26 Copynumber: 2.6 Consensus size: 26
27117626 TAATTTTTAC
*
27117636 TATTATTTTTTATTTCTAATTTTGTTAA
1 TATTA-TTTTTATTT-TAATGTTGTTAA
*
27117664 TATAATTTTTATTTTAATAGTT-TTAA
1 TATTATTTTTATTTTAAT-GTTGTTAA
27117690 TAATTA-TTTTATTTT
1 T-ATTATTTTTATTTT
27117705 TTATTATAAT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
26 18 0.50
27 14 0.39
28 4 0.11
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (26 bp):
TATTATTTTTATTTTAATGTTGTTAA
Found at i:27119924 original size:125 final size:125
Alignment explanation
Indices: 27119702--27119958 Score: 505
Period size: 125 Copynumber: 2.0 Consensus size: 125
27119692 CGGAGCCGCG
27119702 CGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACCGTTCGAT
1 CGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACCGTTCGAT
27119767 CCACGCCGAGCACCTCAAGGGAGGCAGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCA
66 CCACGCCGAGCACCTCAAGGGAGGCAGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCA
27119827 CGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACCGTTCGAT
1 CGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACCGTTCGAT
27119892 CCACGCCGAGCACCTCAAGGGAGGCAGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCA
66 CCACGCCGAGCACCTCAAGGGAGGCAGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCA
27119952 CGAGGTT
1 CG-GGTT
27119959 GGGTGCGGGA
Statistics
Matches: 131, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
125 127 0.97
126 4 0.03
ACGTcount: A:0.21, C:0.29, G:0.34, T:0.16
Consensus pattern (125 bp):
CGGGTTCGGAGCTTGAGTCTCGACCCGTGACAAGTGGTATCAGAGCCAGCCCTAAACCGTTCGAT
CCACGCCGAGCACCTCAAGGGAGGCAGGCAGGGTGGTCAGCCTCCGTGACGAGGGCGTCA
Found at i:27121039 original size:13 final size:13
Alignment explanation
Indices: 27121017--27121055 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
27121007 ATAAACCAAT
*
27121017 TAATTGAATTAAA
1 TAATTCAATTAAA
* *
27121030 TAATTCAATTGAT
1 TAATTCAATTAAA
27121043 TAATTCAATTAAA
1 TAATTCAATTAAA
27121056 ACTAAAATTT
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (13 bp):
TAATTCAATTAAA
Found at i:27125209 original size:45 final size:43
Alignment explanation
Indices: 27125118--27125229 Score: 109
Period size: 45 Copynumber: 2.6 Consensus size: 43
27125108 TGAATGGATT
* *
27125118 CATTTTAGA-TTTTTCAAAGTTTCAAGCCTCTGGTTAGAAGAG
1 CATTTTAGATTTTTTCAAAGTTTCAAACCTCTGGTGAGAAGAG
* * **
27125160 CATTTTAGATTTTTTCCAAAGTTTTGAAACTTCTGGTGAGGGGAG
1 CATTTTAGATTTTTT-CAAAG-TTTCAAACCTCTGGTGAGAAGAG
* * *
27125205 CATTTTTATATTTTTTTAAAATTTC
1 CA-TTTTAGATTTTTTCAAAGTTTC
27125230 CAAGCTTATA
Statistics
Matches: 56, Mismatches: 10, Indels: 6
0.78 0.14 0.08
Matches are distributed among these distances:
42 9 0.16
43 5 0.09
44 8 0.14
45 22 0.39
46 12 0.21
ACGTcount: A:0.27, C:0.12, G:0.17, T:0.45
Consensus pattern (43 bp):
CATTTTAGATTTTTTCAAAGTTTCAAACCTCTGGTGAGAAGAG
Found at i:27125532 original size:11 final size:10
Alignment explanation
Indices: 27125516--27125562 Score: 51
Period size: 10 Copynumber: 4.7 Consensus size: 10
27125506 GAGTCCAAAT
27125516 TTTATTTGTAA
1 TTTATTT-TAA
*
27125527 TTTATTTTAG
1 TTTATTTTAA
*
27125537 TTTAATTTAA
1 TTTATTTTAA
*
27125547 TTT-TATTAA
1 TTTATTTTAA
27125556 TTTATTT
1 TTTATTT
27125563 ATTTAGTCAA
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
9 7 0.24
10 15 0.52
11 7 0.24
ACGTcount: A:0.28, C:0.00, G:0.04, T:0.68
Consensus pattern (10 bp):
TTTATTTTAA
Found at i:27125535 original size:16 final size:16
Alignment explanation
Indices: 27125513--27125553 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
27125503 TAAGAGTCCA
27125513 AATTTTATTTGTAATTT
1 AATTTTATTT-TAATTT
*
27125530 -ATTTTAGTTTAATTT
1 AATTTTATTTTAATTT
27125545 AATTTTATT
1 AATTTTATT
27125554 AATTTATTTA
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
15 6 0.29
16 15 0.71
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (16 bp):
AATTTTATTTTAATTT
Found at i:27127331 original size:27 final size:27
Alignment explanation
Indices: 27127276--27127332 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
27127266 AAGGTGTTTC
* *
27127276 ATTAAAGAAGCACCTAATTGATGATCA
1 ATTAAAGAAGCACCTAATTGATCACCA
*
27127303 ATTAAAGCAAGC-CTTAATTGATCACCA
1 ATTAAAG-AAGCACCTAATTGATCACCA
27127330 ATT
1 ATT
27127333 GAGGCGTTTC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 22 0.85
28 4 0.15
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (27 bp):
ATTAAAGAAGCACCTAATTGATCACCA
Found at i:27138989 original size:30 final size:30
Alignment explanation
Indices: 27138895--27138989 Score: 92
Period size: 30 Copynumber: 3.2 Consensus size: 30
27138885 GGAAAACTTA
*
27138895 TTTCAAGGAAAATTGATACTTTCAACTTTT
1 TTTCAAAGAAAATTGATACTTTCAACTTTT
* * *
27138925 TTTCAAA-AATATT--T--TTTAAAAAGCTTAT
1 TTTCAAAGAAAATTGATACTTT--CAA-CTTTT
27138953 TTTCAAAGAAAATTGATACTTTCAACTTTT
1 TTTCAAAGAAAATTGATACTTTCAACTTTT
27138983 TTTCAAA
1 TTTCAAA
27138990 ATATTTTTTA
Statistics
Matches: 50, Mismatches: 7, Indels: 16
0.68 0.10 0.22
Matches are distributed among these distances:
25 3 0.06
27 3 0.06
28 11 0.22
29 10 0.20
30 17 0.34
31 3 0.06
33 3 0.06
ACGTcount: A:0.38, C:0.12, G:0.06, T:0.44
Consensus pattern (30 bp):
TTTCAAAGAAAATTGATACTTTCAACTTTT
Found at i:27139181 original size:17 final size:16
Alignment explanation
Indices: 27139161--27139201 Score: 55
Period size: 16 Copynumber: 2.4 Consensus size: 16
27139151 ACTTTTTCTC
27139161 AAAAATATATTTTTTTAA
1 AAAAAT-TA-TTTTTTAA
*
27139179 AAAACTTATTTTTTAA
1 AAAAATTATTTTTTAA
27139195 AAAAATT
1 AAAAATT
27139202 GATGCTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
16 14 0.67
17 2 0.10
18 5 0.24
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.46
Consensus pattern (16 bp):
AAAAATTATTTTTTAA
Found at i:27139363 original size:58 final size:57
Alignment explanation
Indices: 27138794--27139363 Score: 613
Period size: 58 Copynumber: 9.8 Consensus size: 57
27138784 AAAATTTTTC
* * * * *
27138794 ACTTTCAACTTTTTTTTAAAAATATTTTTTTTGAAAAGCTTATTTTCAAGAAAAATTGAT
1 ACTTTCAACTTTTCTTCAAAAATA--TTTTTTAAAAAACTTATTTT-AAGGAAAATTGAT
* ** *
27138854 ACTTACAA-TTTT-TTCCTAAAAATATTTTTTTGGAAAACTTATTTCAAGGAAAATTGAT
1 ACTTTCAACTTTTCTT-C-AAAAATA-TTTTTTAAAAAACTTATTTTAAGGAAAATTGAT
* * *
27138912 ACTTTCAACTTTTTTTCAAAAATATTTTTTAAAAAGCTTATTTTCAAAGAAAATTGAT
1 ACTTTCAACTTTTCTTCAAAAATATTTTTTAAAAAACTTATTTT-AAGGAAAATTGAT
* * * *
27138970 ACTTTCAACTTTTTTTC-AAAATATTTTTT-AGAAACTTATTTTTATGAAAAATTGAT
1 ACTTTCAACTTTTCTTCAAAAATATTTTTTAAAAAACTTA-TTTTAAGGAAAATTGAT
* * *
27139026 ACTTTCAACTTTTCCTCAAAAATATTTTTGAAAAAACTTATTTTCAAGAAAAATTGAT
1 ACTTTCAACTTTTCTTCAAAAATATTTTTTAAAAAACTTATTTT-AAGGAAAATTGAT
* *
27139084 ACTTTCAA-TTTATCCTCAAAAATATTTTTTTTGAAAAACTTATTTTCAAGGAAAATTGAT
1 ACTTTCAACTTT-TCTTCAAAAATA--TTTTTTAAAAAACTTATTTT-AAGGAAAATTGAT
*
27139144 ACTTTCAACTTTT-TCTCAAAAATATATTTTTTTAAAAAACTTATTTTTTAA-AAAAATTGAT
1 ACTTTCAACTTTTCT-TC-AAAA-ATA-TTTTTTAAAAAACTTA--TTTTAAGGAAAATTGAT
* * *
27139205 GCTTTCAACTTTTC-TCCAAAATA-TTTTT-AGAAACTTATTTTTAAGGAAAATTGAT
1 ACTTTCAACTTTTCTTCAAAAATATTTTTTAAAAAACTTA-TTTTAAGGAAAATTGAT
* *
27139260 ACTTTCAACTTTT-TCTCAAAACTATTTTTTAGAAAACTTATTTTTAAGGAAAATTGAT
1 ACTTTCAACTTTTCT-TCAAAAATATTTTTTAAAAAACTTA-TTTTAAGGAAAATTGAT
27139318 ACTTTCAACTTTTCTTCAAAAATATTTTTTAAAAAAACTTATTTTA
1 ACTTTCAACTTTTCTTCAAAAATATTTTTT-AAAAAACTTATTTTA
27139364 TATTTTTTAT
Statistics
Matches: 445, Mismatches: 39, Indels: 54
0.83 0.07 0.10
Matches are distributed among these distances:
54 7 0.02
55 29 0.07
56 44 0.10
57 55 0.12
58 157 0.35
59 40 0.09
60 60 0.13
61 44 0.10
62 5 0.01
63 4 0.01
ACGTcount: A:0.38, C:0.11, G:0.06, T:0.45
Consensus pattern (57 bp):
ACTTTCAACTTTTCTTCAAAAATATTTTTTAAAAAACTTATTTTAAGGAAAATTGAT
Found at i:27139445 original size:6 final size:6
Alignment explanation
Indices: 27139434--27139505 Score: 69
Period size: 6 Copynumber: 11.8 Consensus size: 6
27139424 ACATAGATAA
* *
27139434 AAAAAT AAAAAT AAAACT ACAAAA- AAACAA- AGAAAAT AAACA- AAAAAT
1 AAAAAT AAAAAT AAAAAT A-AAAAT AAA-AAT A-AAAAT AAAAAT AAAAAT
27139482 AAAAAT AAAAAT AAAAACT AAAAA
1 AAAAAT AAAAAT AAAAA-T AAAAA
27139506 AATCCAAACG
Statistics
Matches: 56, Mismatches: 4, Indels: 11
0.79 0.06 0.15
Matches are distributed among these distances:
5 6 0.11
6 38 0.68
7 12 0.21
ACGTcount: A:0.81, C:0.07, G:0.01, T:0.11
Consensus pattern (6 bp):
AAAAAT
Found at i:27139459 original size:21 final size:21
Alignment explanation
Indices: 27139433--27139491 Score: 68
Period size: 21 Copynumber: 2.8 Consensus size: 21
27139423 CACATAGATA
27139433 AAAAAATAAAAATAAAACT-AC
1 AAAAAATAAAAATAAAA-TAAC
* *
27139454 AAAAAA-ACAAAGAAAATAAAC
1 AAAAAATAAAAATAAAAT-AAC
27139475 AAAAAATAAAAATAAAA
1 AAAAAATAAAAATAAAA
27139492 ATAAAAACTA
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
19 1 0.03
20 8 0.26
21 14 0.45
22 8 0.26
ACGTcount: A:0.81, C:0.07, G:0.02, T:0.10
Consensus pattern (21 bp):
AAAAAATAAAAATAAAATAAC
Found at i:27141084 original size:44 final size:45
Alignment explanation
Indices: 27141001--27141162 Score: 211
Period size: 44 Copynumber: 3.6 Consensus size: 45
27140991 AGCTCAACCA
* *
27141001 TAGAGACTCAACAACTTTGGAAAAATAAACAAAGGCTCCTCTAAG
1 TAGAGGCTCAACAACTTTGAAAAAATAAACAAAGGCTCCTCTAAG
* * * *
27141046 CAGAGGCTCAACGACTTTGAAAAAATAAATAAA-GCTCCTCTAAA
1 TAGAGGCTCAACAACTTTGAAAAAATAAACAAAGGCTCCTCTAAG
* * *
27141090 TAAAGGCTTAACAACTTTGAAAAAATAAACAAAGGTTCCTCTAAG
1 TAGAGGCTCAACAACTTTGAAAAAATAAACAAAGGCTCCTCTAAG
* *
27141135 TAGAGGCTC-ACGACTTTGGAAAAATAAA
1 TAGAGGCTCAACAACTTTGAAAAAATAAA
27141163 TAAATTCTCT
Statistics
Matches: 99, Mismatches: 17, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
44 55 0.56
45 44 0.44
ACGTcount: A:0.45, C:0.18, G:0.15, T:0.22
Consensus pattern (45 bp):
TAGAGGCTCAACAACTTTGAAAAAATAAACAAAGGCTCCTCTAAG
Found at i:27141255 original size:41 final size:41
Alignment explanation
Indices: 27141181--27141345 Score: 217
Period size: 41 Copynumber: 4.0 Consensus size: 41
27141171 CTAAGCAAAA
*
27141181 GCACCATGACTTT-AAAAATAAA-TGCTCCTCTAAACAGAG
1 GCACCATGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAG
* *
27141220 GCACCATAACTTTGAAAAGTAAATTGCTCCTCTAAAGAGAG
1 GCACCATGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAG
* * * **
27141261 GAAACCAGGACTTTGGAAAGATAAATTGCTCCTCTAAGTAGAG
1 G-CACCATGACTTTGAAAAG-TAAATTGCTCCTCTAAACAGAG
*
27141304 GCATCATGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAG
1 GCACCATGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAG
27141345 G
1 G
27141346 TAACAAAACT
Statistics
Matches: 107, Mismatches: 15, Indels: 6
0.84 0.12 0.05
Matches are distributed among these distances:
39 12 0.11
40 8 0.07
41 38 0.36
42 28 0.26
43 21 0.20
ACGTcount: A:0.38, C:0.19, G:0.18, T:0.24
Consensus pattern (41 bp):
GCACCATGACTTTGAAAAGTAAATTGCTCCTCTAAACAGAG
Found at i:27141304 original size:84 final size:83
Alignment explanation
Indices: 27141194--27141376 Score: 251
Period size: 84 Copynumber: 2.2 Consensus size: 83
27141184 CCATGACTTT
*
27141194 AAAAATAAA-TGCTCCTCTAAACAGAGGCACCATAACTTTGAAAAGTAAATTGCTCCTCTAAAGA
1 AAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTGAAAAGTAAATTGCTCCTCTAAACA
** *
27141258 GAGGAAACCAGGACTTTGG
66 GAGGAAA-CAAAACTTTGA
* ** * *
27141277 AAAGATAAATTGCTCCTCTAAGTAGAGGCATCATGACTTTGAAAAGTAAATTGCTCCTCTAAACA
1 AAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTGAAAAGTAAATTGCTCCTCTAAACA
*
27141342 GAGGTAACAAAACTTTGA
66 GAGGAAACAAAACTTTGA
*
27141360 AAAAAAAAATTGCTCCT
1 AAAAATAAATTGCTCCT
27141377 TAACCATCAT
Statistics
Matches: 87, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
83 31 0.36
84 56 0.64
ACGTcount: A:0.42, C:0.18, G:0.16, T:0.24
Consensus pattern (83 bp):
AAAAATAAATTGCTCCTCTAAACAGAGGCACCATAACTTTGAAAAGTAAATTGCTCCTCTAAACA
GAGGAAACAAAACTTTGA
Found at i:27141357 original size:41 final size:41
Alignment explanation
Indices: 27141189--27141376 Score: 200
Period size: 41 Copynumber: 4.6 Consensus size: 41
27141179 AAGCACCATG
* *
27141189 ACTTT-AAAAATAAA-TGCTCCTCTAAACAGAGGCACCATA
1 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACATA
* * **
27141228 ACTTTGAAAAGTAAATTGCTCCTCTAAAGAGAGGAAACCAGG
1 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAA-CATA
* ** * *
27141270 ACTTTGGAAAGATAAATTGCTCCTCTAAGTAGAGGCATCATG
1 ACTTTGAAAAG-TAAATTGCTCCTCTAAACAGAGGCAACATA
* *
27141312 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGTAACAAA
1 ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACATA
**
27141353 ACTTTGAAAAAAAAAATTGCTCCT
1 ACTTTG-AAAAGTAAATTGCTCCT
27141377 TAACCATCAT
Statistics
Matches: 123, Mismatches: 21, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
39 5 0.04
40 8 0.07
41 48 0.39
42 40 0.33
43 22 0.18
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.25
Consensus pattern (41 bp):
ACTTTGAAAAGTAAATTGCTCCTCTAAACAGAGGCAACATA
Found at i:27143223 original size:26 final size:25
Alignment explanation
Indices: 27143194--27143246 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
27143184 CATTTTTTCA
*
27143194 TTTTTTCTTTCT-TTTTTTCTCCATT
1 TTTTTTTTTTCTATTTTTTCT-CATT
*
27143219 TTTTTTTTTTTTATTTTTTCTCATT
1 TTTTTTTTTTCTATTTTTTCTCATT
27143244 TTT
1 TTT
27143247 CATCCATTGT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.06, C:0.13, G:0.00, T:0.81
Consensus pattern (25 bp):
TTTTTTTTTTCTATTTTTTCTCATT
Found at i:27147397 original size:60 final size:59
Alignment explanation
Indices: 27147215--27147507 Score: 401
Period size: 58 Copynumber: 4.9 Consensus size: 59
27147205 TTTGTACAGA
*
27147215 AAAAATTGATACTTTCAACTTTTCCTGAAAAATATTTTTTAG-AAAACTTATTTTCAAG
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAACTTATTTTCAAG
* *
27147273 AAAAATTGATACTTTCAGCTTTTCCTCAAAAATATTTTTTAG-AAAACTTATTTTTAAG
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAACTTATTTTCAAG
* * * * *
27147331 GAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTGTTTGAAAAATTTATTTTCAAA
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTT-TTAGAAAAACTTATTTTCAAG
* * * * *
27147391 AAAAATTGATACTTTTAACTTTTTCTCAAAAATATATTTTTTATAAAAAATTTATTTTTAAG
1 AAAAATTGATACTTTCAACTTTTCCTC-AAAA-ATATTTTTTA-GAAAAACTTATTTTCAAG
* *
27147453 AAAAATTGATACTTTCAATTTTTCCTCAAAAATATTTTTTAAAAAAACTTATTTT
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAACTTATTTT
27147508 ATATTTTTGA
Statistics
Matches: 208, Mismatches: 22, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
58 90 0.43
59 16 0.08
60 47 0.23
61 10 0.05
62 45 0.22
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (59 bp):
AAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAAACTTATTTTCAAG
Found at i:27147450 original size:17 final size:18
Alignment explanation
Indices: 27147418--27147459 Score: 52
Period size: 17 Copynumber: 2.4 Consensus size: 18
27147408 ACTTTTTCTC
*
27147418 AAAAATATATTTTTTATA-
1 AAAAATTTATTTTTTA-AG
27147436 AAAAATTTA-TTTTTAAG
1 AAAAATTTATTTTTTAAG
27147453 AAAAATT
1 AAAAATT
27147460 GATACTTTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 13 0.59
18 8 0.36
ACGTcount: A:0.52, C:0.00, G:0.02, T:0.45
Consensus pattern (18 bp):
AAAAATTTATTTTTTAAG
Found at i:27147456 original size:18 final size:18
Alignment explanation
Indices: 27147418--27147457 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
27147408 ACTTTTTCTC
* *
27147418 AAAAATATATTTTTTATA
1 AAAAATATATTTTTAAGA
*
27147436 AAAAATTTATTTTTAAGA
1 AAAAATATATTTTTAAGA
27147454 AAAA
1 AAAA
27147458 TTGATACTTT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.55, C:0.00, G:0.03, T:0.42
Consensus pattern (18 bp):
AAAAATATATTTTTAAGA
Found at i:27147547 original size:122 final size:118
Alignment explanation
Indices: 27147215--27147508 Score: 355
Period size: 122 Copynumber: 2.5 Consensus size: 118
27147205 TTTGTACAGA
* * *
27147215 AAAAATTGATACTTTCAACTTTTCCTGAAAAATATTTT-TT-AGAAAACTTATTTTCAAGAAAAA
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTGTTAAAAAAACTTATTTT-AA-AAAAA
* * * * *
27147278 TTGATACTTTCAGCTTTTCCT-CAAAA-ATATTTTTTAGAAAACTTATTTTTAAG
64 TTGATACTTTTAACTTTTTCTAAAAAATATATTTTTTAAAAAACTTATTTTTAAG
* ** *
27147331 GAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTGTTTGAAAAATTTATTTTCAAAAAAAA
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTGTTAAAAAAACTTATTTT--AAAAAAA
* *
27147396 TTGATACTTTTAACTTTTTCTCAAAAATATATTTTTTATAAAAAATTTATTTTTAAG
64 TTGATACTTTTAACTTTTTCTAAAAAATATA-TTTTT-TAAAAAACTTATTTTTAAG
* *
27147453 AAAAATTGATACTTTCAATTTTTCCTCAAAAATATTTT-TTAAAAAAACTTATTTTA
1 AAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTGTTAAAAAAACTTATTTTA
27147509 TATTTTTGAT
Statistics
Matches: 152, Mismatches: 19, Indels: 11
0.84 0.10 0.06
Matches are distributed among these distances:
116 35 0.23
117 2 0.01
118 34 0.22
119 7 0.05
120 3 0.02
121 19 0.12
122 52 0.34
ACGTcount: A:0.40, C:0.11, G:0.05, T:0.44
Consensus pattern (118 bp):
AAAAATTGATACTTTCAACTTTTCCTCAAAAAAATTTTGTTAAAAAAACTTATTTTAAAAAAATT
GATACTTTTAACTTTTTCTAAAAAATATATTTTTTAAAAAACTTATTTTTAAG
Found at i:27148901 original size:23 final size:24
Alignment explanation
Indices: 27148842--27148904 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 24
27148832 GATAGACCAT
* *
27148842 AAAAAGGAATAAAAATGATAAATAC
1 AAAAATGAATAAAAAT-CTAAATAC
*
27148867 AAAAAT--AGAAAAATCTAAA-AC
1 AAAAATGAATAAAAATCTAAATAC
27148888 AAAAATGAATAAAAATC
1 AAAAATGAATAAAAATC
27148905 CCTACACCCG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
21 8 0.25
22 4 0.12
23 15 0.47
25 5 0.16
ACGTcount: A:0.70, C:0.06, G:0.08, T:0.16
Consensus pattern (24 bp):
AAAAATGAATAAAAATCTAAATAC
Found at i:27152937 original size:6 final size:6
Alignment explanation
Indices: 27152914--27152983 Score: 77
Period size: 6 Copynumber: 11.2 Consensus size: 6
27152904 AAAGCCCAAG
* * * *
27152914 AATTTT AATTTG ATTTTT AATTTTT AATTTTT AATTCT AATTTT AGTTTTT
1 AATTTT AATTTT AATTTT AA-TTTT AA-TTTT AATTTT AATTTT A-ATTTT
27152965 AATTTT AATTTT AATTTT A
1 AATTTT AATTTT AATTTT A
27152984 TTGATCAAAG
Statistics
Matches: 54, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
6 36 0.67
7 18 0.33
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (6 bp):
AATTTT
Found at i:27152938 original size:7 final size:7
Alignment explanation
Indices: 27152926--27152982 Score: 68
Period size: 7 Copynumber: 8.7 Consensus size: 7
27152916 TTTTAATTTG
27152926 ATTTTTA
1 ATTTTTA
27152933 ATTTTTA
1 ATTTTTA
27152940 ATTTTTA
1 ATTTTTA
*
27152947 A-TTCTA
1 ATTTTTA
27152953 A-TTTTA
1 ATTTTTA
*
27152959 GTTTTTA
1 ATTTTTA
27152966 A-TTTTA
1 ATTTTTA
27152972 A-TTTTA
1 ATTTTTA
27152978 ATTTT
1 ATTTT
27152983 ATTGATCAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
6 21 0.48
7 23 0.52
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (7 bp):
ATTTTTA
Found at i:27152945 original size:26 final size:24
Alignment explanation
Indices: 27152914--27152983 Score: 86
Period size: 26 Copynumber: 2.8 Consensus size: 24
27152904 AAAGCCCAAG
*
27152914 AATTTTAATTTGATTTTTAATTTTT
1 AATTTTAATTT-AATTTTAATTTTT
*
27152939 AATTTTTAATTCTAATTTTAGTTTTT
1 AA-TTTTAATT-TAATTTTAATTTTT
27152965 AATTTTAATTTTAATTTTA
1 AATTTTAA-TTTAATTTTA
27152984 TTGATCAAAG
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
25 16 0.40
26 23 0.57
27 1 0.03
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.66
Consensus pattern (24 bp):
AATTTTAATTTAATTTTAATTTTT
Found at i:27152957 original size:19 final size:19
Alignment explanation
Indices: 27152935--27152982 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
27152925 GATTTTTAAT
27152935 TTTTAATTTTTAATTCTAA
1 TTTTAATTTTTAATTCTAA
* *
27152954 TTTTAGTTTTTAATTTTAA
1 TTTTAATTTTTAATTCTAA
27152973 TTTTAATTTT
1 TTTTAATTTT
27152983 ATTGATCAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 26 1.00
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTTAATTTTTAATTCTAA
Found at i:27154265 original size:59 final size:59
Alignment explanation
Indices: 27154124--27154271 Score: 190
Period size: 59 Copynumber: 2.5 Consensus size: 59
27154114 TTTGTTATAA
* * *
27154124 ATTTGTTAAAATTTGTTTGGGCTTTGATTACTAATGTATTGAGATTTTGTTAGTTTTTT
1 ATTTGTTAAAATTTGTTTGGGTTTTGGTTACTAATGTATTGAGATTTTGTTAGTTTTAT
* * * * *
27154183 ATTTGTTGAAATTT-TTATGGGTTTTGGTTACTACTTTATTGAGCTTTTGTTGGTTTTAT
1 ATTTGTTAAAATTTGTT-TGGGTTTTGGTTACTAATGTATTGAGATTTTGTTAGTTTTAT
* *
27154242 ATTTGTTAAAATTTGTTTAGGTTTTTGTTA
1 ATTTGTTAAAATTTGTTTGGGTTTTGGTTA
27154272 TATATTTGTT
Statistics
Matches: 76, Mismatches: 11, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
58 2 0.03
59 72 0.95
60 2 0.03
ACGTcount: A:0.20, C:0.03, G:0.19, T:0.57
Consensus pattern (59 bp):
ATTTGTTAAAATTTGTTTGGGTTTTGGTTACTAATGTATTGAGATTTTGTTAGTTTTAT
Found at i:27154308 original size:27 final size:24
Alignment explanation
Indices: 27154263--27154317 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 24
27154253 TTTGTTTAGG
27154263 TTTTTGTTATATATTTGTTGAAATT
1 TTTTTGTTATATATTTGTT-AAATT
*
27154288 TTTTTGTTATATATTTTTGTTAGATT
1 TTTTTGTTATATA--TTTGTTAAATT
27154314 TTTT
1 TTTT
27154318 ATTGAGTATT
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
25 13 0.48
26 8 0.30
27 6 0.22
ACGTcount: A:0.20, C:0.00, G:0.11, T:0.69
Consensus pattern (24 bp):
TTTTTGTTATATATTTGTTAAATT
Found at i:27154646 original size:18 final size:18
Alignment explanation
Indices: 27154623--27154660 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
27154613 CTATATTTGT
27154623 TTTGAAATAATTTATATA
1 TTTGAAATAATTTATATA
*
27154641 TTTGAAGTAATTTATATA
1 TTTGAAATAATTTATATA
27154659 TT
1 TT
27154661 ATTAAGATTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.39, C:0.00, G:0.08, T:0.53
Consensus pattern (18 bp):
TTTGAAATAATTTATATA
Found at i:27154672 original size:17 final size:17
Alignment explanation
Indices: 27154631--27154678 Score: 62
Period size: 18 Copynumber: 2.8 Consensus size: 17
27154621 GTTTTGAAAT
27154631 AATTTATATATTTGAAG
1 AATTTATATATTTGAAG
*
27154648 TAATTTATATATTATTAAG
1 -AATTTATATATT-TGAAG
27154667 -ATTTATATATTT
1 AATTTATATATTT
27154679 AGTAGTTTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
16 1 0.04
17 11 0.39
18 12 0.43
19 4 0.14
ACGTcount: A:0.40, C:0.00, G:0.06, T:0.54
Consensus pattern (17 bp):
AATTTATATATTTGAAG
Found at i:27156922 original size:15 final size:15
Alignment explanation
Indices: 27156904--27156933 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
27156894 TTCTATTGGA
*
27156904 AAATCCGTCACTAAT
1 AAATCCGTCAATAAT
27156919 AAATCCGTCAATAAT
1 AAATCCGTCAATAAT
27156934 TATCGATAGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.23, G:0.07, T:0.27
Consensus pattern (15 bp):
AAATCCGTCAATAAT
Found at i:27157544 original size:25 final size:25
Alignment explanation
Indices: 27157515--27157590 Score: 72
Period size: 25 Copynumber: 3.1 Consensus size: 25
27157505 TAGGTTTTTG
*
27157515 TTTTTGTTTTTATCTTTATTTT-T-T
1 TTTTTGTTTTTA-ATTTATTTTCTAT
*
27157539 TATTTTGATTTTAATTTATTTTCTAT
1 T-TTTTGTTTTTAATTTATTTTCTAT
27157565 TTTTTGTTTTT--TTCTATTTTCT-T
1 TTTTTGTTTTTAATT-TATTTTCTAT
27157588 TTT
1 TTT
27157591 ACCTTTTTTT
Statistics
Matches: 45, Mismatches: 3, Indels: 9
0.79 0.05 0.16
Matches are distributed among these distances:
23 6 0.13
24 17 0.38
25 20 0.44
26 2 0.04
ACGTcount: A:0.12, C:0.05, G:0.04, T:0.79
Consensus pattern (25 bp):
TTTTTGTTTTTAATTTATTTTCTAT
Found at i:27157764 original size:20 final size:20
Alignment explanation
Indices: 27157736--27157838 Score: 113
Period size: 20 Copynumber: 5.3 Consensus size: 20
27157726 TGAATTTAAT
*
27157736 TTAACAATATATTTGCATGA
1 TTAATAATATATTTGCATGA
*
27157756 TTAATAATATACTTGCATGA
1 TTAATAATATATTTGCATGA
* *
27157776 TTATTGAT-TATTTGCATGA
1 TTAATAATATATTTGCATGA
*
27157795 TTACTAATATATTTGCATGA
1 TTAATAATATATTTGCATGA
* * *
27157815 CT-ATTAT-TATTTACATGA
1 TTAATAATATATTTGCATGA
27157833 TTAATA
1 TTAATA
27157839 TTTGTATGAT
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
18 11 0.16
19 21 0.31
20 36 0.53
ACGTcount: A:0.36, C:0.09, G:0.10, T:0.46
Consensus pattern (20 bp):
TTAATAATATATTTGCATGA
Found at i:27157803 original size:39 final size:38
Alignment explanation
Indices: 27157745--27157838 Score: 143
Period size: 39 Copynumber: 2.4 Consensus size: 38
27157735 TTTAACAATA
*
27157745 TATTTGCATGATTAATAATATACTTGCATGATTATTGAT
1 TATTTGCATGATTAATAATATACTTGCATGACTATT-AT
* *
27157784 TATTTGCATGATTACTAATATATTTGCATGACTATTAT
1 TATTTGCATGATTAATAATATACTTGCATGACTATTAT
*
27157822 TATTTACATGATTAATA
1 TATTTGCATGATTAATA
27157839 TTTGTATGAT
Statistics
Matches: 50, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
38 17 0.34
39 33 0.66
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.47
Consensus pattern (38 bp):
TATTTGCATGATTAATAATATACTTGCATGACTATTAT
Found at i:27162470 original size:24 final size:24
Alignment explanation
Indices: 27162438--27162485 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
27162428 CCGTGAAACA
27162438 TTGACTGTTGAACTCTTCAAATGC
1 TTGACTGTTGAACTCTTCAAATGC
27162462 TTGACTGTTGAACTCTTCAAATGC
1 TTGACTGTTGAACTCTTCAAATGC
27162486 CCTACCGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (24 bp):
TTGACTGTTGAACTCTTCAAATGC
Found at i:27163220 original size:19 final size:19
Alignment explanation
Indices: 27163196--27163238 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
27163186 TTACTAAAAA
27163196 TTTTATCTTTA-AAATTTAT
1 TTTTAT-TTTATAAATTTAT
**
27163215 TTTTATTTTATATTTTTAT
1 TTTTATTTTATAAATTTAT
27163234 TTTTA
1 TTTTA
27163239 AATTTTTCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.26, C:0.02, G:0.00, T:0.72
Consensus pattern (19 bp):
TTTTATTTTATAAATTTAT
Found at i:27163238 original size:14 final size:13
Alignment explanation
Indices: 27163212--27163236 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
27163202 CTTTAAAATT
27163212 TATTTTTATTTTA
1 TATTTTTATTTTA
27163225 TATTTTTATTTT
1 TATTTTTATTTT
27163237 TAAATTTTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (13 bp):
TATTTTTATTTTA
Found at i:27163489 original size:16 final size:15
Alignment explanation
Indices: 27163454--27163497 Score: 54
Period size: 16 Copynumber: 2.9 Consensus size: 15
27163444 TCAAAAATTT
27163454 TATTTTAT-ATTTTA
1 TATTTTATAATTTTA
27163468 TATTTTATAATTATTA
1 TATTTTATAATT-TTA
* *
27163484 TTTTTTACAATTTT
1 TATTTTATAATTTT
27163498 TGTAATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
14 8 0.31
15 5 0.19
16 13 0.50
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (15 bp):
TATTTTATAATTTTA
Found at i:27163568 original size:16 final size:16
Alignment explanation
Indices: 27163543--27163573 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
27163533 AGAAAACCGA
27163543 ATAAACAAATAAAATC
1 ATAAACAAATAAAATC
*
27163559 ATAAATAAATAAAAT
1 ATAAACAAATAAAAT
27163574 ACCAAAAAAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.71, C:0.06, G:0.00, T:0.23
Consensus pattern (16 bp):
ATAAACAAATAAAATC
Found at i:27164520 original size:15 final size:16
Alignment explanation
Indices: 27164493--27164533 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
27164483 TTATAATATC
27164493 TCAAAACTTTAAAG-AT
1 TCAAAA-TTTAAAGTAT
*
27164509 TCACAATTTAAAGTAT
1 TCAAAATTTAAAGTAT
27164525 TCAAAATTT
1 TCAAAATTT
27164534 TATAATTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
15 7 0.32
16 15 0.68
ACGTcount: A:0.46, C:0.12, G:0.05, T:0.37
Consensus pattern (16 bp):
TCAAAATTTAAAGTAT
Found at i:27164584 original size:21 final size:22
Alignment explanation
Indices: 27164560--27164617 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
27164550 CAATTGAAAC
*
27164560 TCAAAGATTCACAATTT-AAGT
1 TCAAAGATTCACAATTTAAAAT
* *
27164581 TCAAAGAATCATAATTTCAAAAT
1 TCAAAGATTCACAATTT-AAAAT
*
27164604 TCAAAAATTCACAA
1 TCAAAGATTCACAA
27164618 GGTTCAAAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
21 15 0.52
23 14 0.48
ACGTcount: A:0.50, C:0.16, G:0.05, T:0.29
Consensus pattern (22 bp):
TCAAAGATTCACAATTTAAAAT
Done.