Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 31 of 195
Found at i:6946363 original size:15 final size:16
Alignment explanation
Indices: 6946343--6946372 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
6946333 ACATCAAATA
6946343 TATTTT-ATTTTTTAT
1 TATTTTCATTTTTTAT
6946358 TATTTTCATTTTTTA
1 TATTTTCATTTTTTA
6946373 AGATTTATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.20, C:0.03, G:0.00, T:0.77
Consensus pattern (16 bp):
TATTTTCATTTTTTAT
Found at i:6948258 original size:22 final size:22
Alignment explanation
Indices: 6948190--6948269 Score: 74
Period size: 22 Copynumber: 3.6 Consensus size: 22
6948180 TAAATACATT
*
6948190 AATAA-ATAAAGAAGATAAGTAA
1 AATAATATAAATAAGATAA-TAA
* *
6948212 AATAATA-AAATAATAATAATCA
1 AATAATATAAATAA-GATAATAA
* *
6948234 AATAAGATAAATAAGATAAAAA
1 AATAATATAAATAAGATAATAA
*
6948256 AATTATATAAATAA
1 AATAATATAAATAA
6948270 AAAAATATGA
Statistics
Matches: 46, Mismatches: 9, Indels: 6
0.75 0.15 0.10
Matches are distributed among these distances:
22 35 0.76
23 11 0.24
ACGTcount: A:0.69, C:0.01, G:0.06, T:0.24
Consensus pattern (22 bp):
AATAATATAAATAAGATAATAA
Found at i:6948639 original size:78 final size:78
Alignment explanation
Indices: 6948498--6948644 Score: 192
Period size: 77 Copynumber: 1.9 Consensus size: 78
6948488 GCTCATCGAA
* * *
6948498 AATAAAAGCATACAATTTAAAAAAAAAAAAAACTTCTCCATAATAGAGGCATACAACTCAAAAAT
1 AATAAAAGCACACAACTTAAAAAAAAAAAAAACTTCTCCATAATAGAGGCACACAACTCAAAAAT
6948563 AAAGGCTCCTCAT
66 AAAGGCTCCTCAT
* * *
6948576 AATAAAAGCACACAACTT-AAAAAAAAAAAGA-TTCAT-CATAAATAGAGTCACACAACTTTAAA
1 AATAAAAGCACACAACTTAAAAAAAAAAAAAACTTC-TCCAT-AATAGAGGCACACAAC-TCAAA
6948638 AATAAAG
63 AATAAAG
6948645 ACTAATATCC
Statistics
Matches: 60, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
76 6 0.10
77 27 0.45
78 27 0.45
ACGTcount: A:0.56, C:0.16, G:0.07, T:0.20
Consensus pattern (78 bp):
AATAAAAGCACACAACTTAAAAAAAAAAAAAACTTCTCCATAATAGAGGCACACAACTCAAAAAT
AAAGGCTCCTCAT
Found at i:6949050 original size:111 final size:112
Alignment explanation
Indices: 6948819--6949050 Score: 256
Period size: 111 Copynumber: 2.1 Consensus size: 112
6948809 TCATGATTGG
* *
6948819 TTTTCTTGAAATATCATTTTTTTCAAGAATTAGAATTTTACCTTAGAAGCTTATTCTCAAATAAG
1 TTTTCTTGAAATATCA-TTTTTTCAAGAATTAAAATCTTACCTTAGAAGCTTATTCTCAAATAAG
* * * *
6948884 AATTTGAAGTTCCTTCACTAGAAAGTCTTCATACTTACCTTTTCCACA
65 AATTTAAAATTCCTTCACTAGAAAGTCTTCATACTTACATTTTCCAAA
* * * * * *
6948932 TTGTTCTTGAAATATTC-TTTTTTCAAGGATTAAAATCTTATCTTA-AA-TTTTTTTTTAAATAA
1 TT-TTCTTGAAATA-TCATTTTTTCAAGAATTAAAATCTTACCTTAGAAGCTTATTCTCAAATAA
* **
6948994 GAATTTAAAATTCTTTC-CTTAGAAAGTCTTCATACTTACATTTCTTGAAA
64 GAATTTAAAATTCCTTCAC-TAGAAAGTCTTCATACTTACATTT-TCCAAA
6949044 TTTTCTT
1 TTTTCTT
6949051 TTTTCAAGGT
Statistics
Matches: 100, Mismatches: 15, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
110 1 0.01
111 53 0.53
112 7 0.07
113 26 0.26
114 11 0.11
115 2 0.02
ACGTcount: A:0.31, C:0.15, G:0.08, T:0.46
Consensus pattern (112 bp):
TTTTCTTGAAATATCATTTTTTCAAGAATTAAAATCTTACCTTAGAAGCTTATTCTCAAATAAGA
ATTTAAAATTCCTTCACTAGAAAGTCTTCATACTTACATTTTCCAAA
Found at i:6949217 original size:101 final size:101
Alignment explanation
Indices: 6948935--6949236 Score: 376
Period size: 101 Copynumber: 3.0 Consensus size: 101
6948925 TTCCACATTG
* * * * * *
6948935 TTCTTGAAATATTCTTTTTTCAAGGATTAAAATCTTATCTT-AAA-TTTTTTTTTAAATAAGAAT
1 TTCTTGAAAT-TTCTTTTTTCAAGGATTAGAATTTTACCTTAAAAGTTTCTTTTCAAATGAGAAT
* * * *
6948998 TTAAAATTCTTTC-CTTAGAAAGTCTTCATACTTACAT
65 TTGAAGTTCCTTCAC-TAGAGAGTCTTCATACTTACAT
* ** *
6949035 TTCTTGAAATTTTCTTTTTTCAAGGTTTAGAATTTTACCCCAAAAGTGTTCTTCTCAAATGAGAA
1 TTCTTGAAA-TTTCTTTTTTCAAGGATTAGAATTTTACCTTAAAAGT-TTCTTTTCAAATGAGAA
*
6949100 TTTGAAGTTCCTTCACTAGAGAGTCTTTATACTTACAT
64 TTTGAAGTTCCTTCACTAGAGAGTCTTCATACTTACAT
* * *
6949138 TTCTTGAAATTTCATTTTTCAAGGATTGGAGTTTTACCTTAAAAGTTTCTTTTCAAATGAGAATT
1 TTCTTGAAATTTCTTTTTTCAAGGATTAGAATTTTACCTTAAAAGTTTCTTTTCAAATGAGAATT
*
6949203 TGAAGTTCCTTCACTGGAGAGTCTTCATACTTAC
66 TGAAGTTCCTTCACTAGAGAGTCTTCATACTTAC
6949237 CTTTTCCACA
Statistics
Matches: 173, Mismatches: 24, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
100 33 0.19
101 54 0.31
102 32 0.18
103 53 0.31
104 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.11, T:0.44
Consensus pattern (101 bp):
TTCTTGAAATTTCTTTTTTCAAGGATTAGAATTTTACCTTAAAAGTTTCTTTTCAAATGAGAATT
TGAAGTTCCTTCACTAGAGAGTCTTCATACTTACAT
Found at i:6950152 original size:12 final size:12
Alignment explanation
Indices: 6950135--6950161 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
6950125 ACTTTGAACT
6950135 TTTTTTATTTTA
1 TTTTTTATTTTA
6950147 TTTTTTATTTTA
1 TTTTTTATTTTA
6950159 TTT
1 TTT
6950162 CACTATGCAC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:6950582 original size:81 final size:79
Alignment explanation
Indices: 6950472--6950643 Score: 215
Period size: 81 Copynumber: 2.2 Consensus size: 79
6950462 AACTTATTTC
* * *
6950472 AAACTTACCCCTTAATATAAGGCATTATTT-TCTAG-CCCTTCAATATAAAATCAAATGCCCTCA
1 AAACTTGCCCCTTAACATAAGGCATTATTTCT-TAGACCCTT-AACATAAAATCAAATGCCCTCA
*
6950535 ATGATATCCTTTTTTTT
64 ATGAGAT-CTTTTTTTT
* * *
6950552 GAACTTGCCTCCTTAACATAA-GCTATTATTTCTTAGACCCTTAACATAAGATCAAATGCCCTTA
1 AAACTTGCC-CCTTAACATAAGGC-ATTATTTCTTAGACCCTTAACATAAAATCAAATGCCCTCA
6950616 ATGAGATCTTTTTTTT
64 ATGAGATCTTTTTTTT
6950632 AAACTTGCCCCT
1 AAACTTGCCCCT
6950644 AAATTTGGAT
Statistics
Matches: 80, Mismatches: 8, Indels: 9
0.82 0.08 0.09
Matches are distributed among these distances:
79 3 0.04
80 26 0.32
81 45 0.56
82 6 0.08
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (79 bp):
AAACTTGCCCCTTAACATAAGGCATTATTTCTTAGACCCTTAACATAAAATCAAATGCCCTCAAT
GAGATCTTTTTTTT
Found at i:6953959 original size:44 final size:44
Alignment explanation
Indices: 6953909--6954083 Score: 165
Period size: 44 Copynumber: 3.9 Consensus size: 44
6953899 GATGTTCCCT
* *
6953909 ATATAACAATTGGAATGATGCAAATGCACAAGGTTAAATAAACA
1 ATATAACAATTGAAATGATGCAAATGCACAAAGTTAAATAAACA
*
6953953 ATATAACAATTGAAATGATGCAAATGCATAAAGTTAAATAAACAA
1 ATATAACAATTGAAATGATGCAAATGCACAAAGTTAAATAAAC-A
* * * * * *
6953998 ACAATAGGACAATTGAAGTTATGTAAATAGGCAC-AA-TTAAACAAATA
1 A-TATA--ACAATTGAAATGATGCAAAT--GCACAAAGTTAAATAAACA
* * * *
6954045 ATATGACAATTAAAATGATACAAATGCACAAAGTCAAAT
1 ATATAACAATTGAAATGATGCAAATGCACAAAGTTAAAT
6954084 GATTAAATAA
Statistics
Matches: 104, Mismatches: 19, Indels: 16
0.75 0.14 0.12
Matches are distributed among these distances:
42 4 0.04
43 2 0.02
44 59 0.57
45 2 0.02
46 5 0.05
47 2 0.02
48 25 0.24
49 2 0.02
50 3 0.03
ACGTcount: A:0.53, C:0.11, G:0.13, T:0.23
Consensus pattern (44 bp):
ATATAACAATTGAAATGATGCAAATGCACAAAGTTAAATAAACA
Found at i:6955572 original size:7 final size:8
Alignment explanation
Indices: 6955542--6955571 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
6955532 ATCAAATATC
*
6955542 TTTTATTA
1 TTTTTTTA
6955550 TTTTTTTA
1 TTTTTTTA
6955558 TTTTTTTA
1 TTTTTTTA
6955566 TTTTTT
1 TTTTTT
6955572 AAGATTTATC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (8 bp):
TTTTTTTA
Found at i:6958111 original size:16 final size:14
Alignment explanation
Indices: 6958090--6958123 Score: 50
Period size: 16 Copynumber: 2.3 Consensus size: 14
6958080 TAGATATAAT
6958090 TAAAGATAAAGAACAA
1 TAAAGATAAA-AA-AA
6958106 TAAAGATAAAAAAA
1 TAAAGATAAAAAAA
6958120 TAAA
1 TAAA
6958124 TAAATAAAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 6 0.33
15 2 0.11
16 10 0.56
ACGTcount: A:0.74, C:0.03, G:0.09, T:0.15
Consensus pattern (14 bp):
TAAAGATAAAAAAA
Found at i:6958209 original size:17 final size:17
Alignment explanation
Indices: 6958152--6958213 Score: 51
Period size: 17 Copynumber: 3.8 Consensus size: 17
6958142 AAAATAATCA
*
6958152 AATAATAATAATCAAAT
1 AATAATAATAATAAAAT
* *
6958169 AA-GAT-A-AATAAGAT
1 AATAATAATAATAAAAT
*
6958183 AAGT-AGAATAATAAAAT
1 AA-TAATAATAATAAAAT
6958200 AATAATAATAATAA
1 AATAATAATAATAA
6958214 TCAAATAAGA
Statistics
Matches: 34, Mismatches: 6, Indels: 10
0.68 0.12 0.20
Matches are distributed among these distances:
14 8 0.24
15 2 0.06
16 4 0.12
17 20 0.59
ACGTcount: A:0.66, C:0.02, G:0.06, T:0.26
Consensus pattern (17 bp):
AATAATAATAATAAAAT
Found at i:6958229 original size:17 final size:17
Alignment explanation
Indices: 6958143--6958230 Score: 64
Period size: 14 Copynumber: 5.4 Consensus size: 17
6958133 AGGATAAGCA
6958143 AAATAATCAAAT-A-AT
1 AAATAATCAAATAAGAT
6958158 -AATAATCAAATAAGAT
1 AAATAATCAAATAAGAT
*
6958174 AAAT-A--AGATAAG-T
1 AAATAATCAAATAAGAT
* *
6958187 AGAATAATAAAATAATAAT
1 A-AATAATCAAATAA-GAT
6958206 AATAATAATCAAATAAGAT
1 -A-AATAATCAAATAAGAT
6958225 AAATAA
1 AAATAA
6958231 GATAATATAT
Statistics
Matches: 57, Mismatches: 6, Indels: 18
0.70 0.07 0.22
Matches are distributed among these distances:
13 2 0.04
14 20 0.35
15 2 0.04
16 3 0.05
17 13 0.23
18 1 0.02
19 3 0.05
20 13 0.23
ACGTcount: A:0.66, C:0.03, G:0.06, T:0.25
Consensus pattern (17 bp):
AAATAATCAAATAAGAT
Found at i:6958237 original size:17 final size:17
Alignment explanation
Indices: 6958166--6958237 Score: 53
Period size: 17 Copynumber: 4.2 Consensus size: 17
6958156 ATAATAATCA
6958166 AATAAG-ATAAATAAGAT
1 AATAAGAAT-AATAAGAT
*
6958183 AAGT-AGAATAATAAAAT
1 AA-TAAGAATAATAAGAT
* *
6958200 AATAATAATAATAATCA-
1 AATAAGAATAATAA-GAT
6958217 AATAAG-ATAAATAAGAT
1 AATAAGAAT-AATAAGAT
6958234 AATA
1 AATA
6958238 TATATAAATG
Statistics
Matches: 44, Mismatches: 5, Indels: 12
0.72 0.08 0.20
Matches are distributed among these distances:
16 4 0.09
17 36 0.82
18 4 0.09
ACGTcount: A:0.65, C:0.01, G:0.08, T:0.25
Consensus pattern (17 bp):
AATAAGAATAATAAGAT
Found at i:6959427 original size:20 final size:20
Alignment explanation
Indices: 6959402--6959441 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
6959392 TGAATTCATT
6959402 AAAAAACAAATAATAAAAAG
1 AAAAAACAAATAATAAAAAG
** *
6959422 AAAAAATTAATATTAAAAAG
1 AAAAAACAAATAATAAAAAG
6959442 TTTGTCATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (20 bp):
AAAAAACAAATAATAAAAAG
Found at i:6963652 original size:26 final size:25
Alignment explanation
Indices: 6963623--6963679 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
6963613 AACCTTCTGC
* *
6963623 TTTTGTTTTTAACTATTATTTTTTATT
1 TTTTCTTTTTAACT-TT-TTTTTAATT
6963650 TTTATCTTTTTAACTTTTTTTTAATT
1 TTT-TCTTTTTAACTTTTTTTTAATT
6963676 TTTT
1 TTTT
6963680 AATTTAAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
25 1 0.04
26 11 0.41
27 5 0.19
28 10 0.37
ACGTcount: A:0.18, C:0.05, G:0.02, T:0.75
Consensus pattern (25 bp):
TTTTCTTTTTAACTTTTTTTTAATT
Found at i:6968129 original size:12 final size:12
Alignment explanation
Indices: 6968112--6968144 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
6968102 AACAAATCTA
6968112 TAACAAAAAATT
1 TAACAAAAAATT
*
6968124 TAACAATAAATT
1 TAACAAAAAATT
6968136 TAACAAAAA
1 TAACAAAAA
6968145 TACAAAATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (12 bp):
TAACAAAAAATT
Found at i:6969668 original size:2 final size:2
Alignment explanation
Indices: 6969661--6969693 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
6969651 CCATTCTAAG
6969661 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
6969694 AAGATTATAT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6969801 original size:21 final size:21
Alignment explanation
Indices: 6969777--6969834 Score: 61
Period size: 20 Copynumber: 2.9 Consensus size: 21
6969767 TAATTTAATT
6969777 TAATAAAATAATATATTCATA
1 TAATAAAATAATATATTCATA
*
6969798 TAATTAAAAT-ATA-ATTTATA
1 TAA-TAAAATAATATATTCATA
*
6969818 TTA-AAAATAATAT-TTCA
1 TAATAAAATAATATATTCA
6969835 ATGAATATTA
Statistics
Matches: 31, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
18 5 0.16
19 6 0.19
20 8 0.26
21 6 0.19
22 6 0.19
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.41
Consensus pattern (21 bp):
TAATAAAATAATATATTCATA
Found at i:6970159 original size:21 final size:20
Alignment explanation
Indices: 6970118--6970167 Score: 84
Period size: 20 Copynumber: 2.5 Consensus size: 20
6970108 CTCGAAATTA
6970118 ATAAAATATTATTTTTTAAT
1 ATAAAATATTATTTTTTAAT
6970138 ATAAAATATTATTTTTTAA-
1 ATAAAATATTATTTTTTAAT
6970157 ATATAAATATT
1 ATA-AAATATT
6970168 TAAAAATATC
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
19 3 0.10
20 26 0.90
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (20 bp):
ATAAAATATTATTTTTTAAT
Found at i:6970204 original size:20 final size:19
Alignment explanation
Indices: 6970181--6970226 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 19
6970171 AAATATCATT
6970181 AAATAAATATATATAA-TAAA
1 AAATAAATA-AT-TAATTAAA
6970201 AAATTAAATAATTAATTAAA
1 AAA-TAAATAATTAATTAAA
6970221 AAATAA
1 AAATAA
6970227 TTTTTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 6 0.25
20 12 0.50
21 6 0.25
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AAATAAATAATTAATTAAA
Found at i:6970588 original size:20 final size:22
Alignment explanation
Indices: 6970540--6970589 Score: 59
Period size: 25 Copynumber: 2.2 Consensus size: 22
6970530 AAAGATAAAA
6970540 TTGATAAAATGAATTTAAGATAAAT
1 TTGATAAAATGAATTT-A-AT-AAT
6970565 TTGATAAAATGAATTT-AT-AT
1 TTGATAAAATGAATTTAATAAT
6970585 TTGAT
1 TTGAT
6970590 TTGTTATATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 7 0.28
22 2 0.08
25 16 0.64
ACGTcount: A:0.46, C:0.00, G:0.12, T:0.42
Consensus pattern (22 bp):
TTGATAAAATGAATTTAATAAT
Found at i:6970592 original size:25 final size:25
Alignment explanation
Indices: 6970531--6970581 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
6970521 TATATTTGGA
*
6970531 AAGATAAAATTGATAAAATGAATTT
1 AAGATAAATTTGATAAAATGAATTT
6970556 AAGATAAATTTGATAAAATGAATTT
1 AAGATAAATTTGATAAAATGAATTT
6970581 A
1 A
6970582 TATTTGATTT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.55, C:0.00, G:0.12, T:0.33
Consensus pattern (25 bp):
AAGATAAATTTGATAAAATGAATTT
Found at i:6975005 original size:21 final size:21
Alignment explanation
Indices: 6974971--6975024 Score: 63
Period size: 21 Copynumber: 2.5 Consensus size: 21
6974961 ATTAATTTTG
6974971 ATAAAATTTAAATTATAATAAAA
1 ATAAAA-TT-AATTATAATAAAA
* * *
6974994 ATATAATTAATTATTATAATA
1 ATAAAATTAATTATAATAAAA
6975015 ATAAAATTAA
1 ATAAAATTAA
6975025 ATTTAATGAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
21 20 0.74
22 2 0.07
23 5 0.19
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (21 bp):
ATAAAATTAATTATAATAAAA
Found at i:6985474 original size:12 final size:12
Alignment explanation
Indices: 6985449--6985489 Score: 55
Period size: 12 Copynumber: 3.4 Consensus size: 12
6985439 CACCATTATA
*
6985449 TATATATATATG
1 TATATATGTATG
*
6985461 TATGTATGTATG
1 TATATATGTATG
*
6985473 TATATATGTATA
1 TATATATGTATG
6985485 TATAT
1 TATAT
6985490 TATAATATTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.37, C:0.00, G:0.12, T:0.51
Consensus pattern (12 bp):
TATATATGTATG
Found at i:6995202 original size:21 final size:21
Alignment explanation
Indices: 6995156--6995218 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
6995146 AATATTGTTA
* *
6995156 TTATT-TTTTATTTATTTTTT
1 TTATTGTTTTCTTTATTCTTT
* *
6995176 CATTATTGTTTTGTTTTTTCTTT
1 --TTATTGTTTTCTTTATTCTTT
*
6995199 TTATTTTTTTCTTTATTCTT
1 TTATTGTTTTCTTTATTCTT
6995219 GTTCATTAAA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
21 17 0.50
22 5 0.15
23 12 0.35
ACGTcount: A:0.11, C:0.06, G:0.03, T:0.79
Consensus pattern (21 bp):
TTATTGTTTTCTTTATTCTTT
Found at i:6996096 original size:18 final size:17
Alignment explanation
Indices: 6996070--6996107 Score: 58
Period size: 18 Copynumber: 2.2 Consensus size: 17
6996060 TTTTTAGTTA
*
6996070 TTTGGTTTTGGTTTTTGT
1 TTTGATTTTGGTTTTT-T
6996088 TTTGATTTTGGTTTTTT
1 TTTGATTTTGGTTTTTT
6996105 TTT
1 TTT
6996108 ATAGAAAGGT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 4 0.21
18 15 0.79
ACGTcount: A:0.03, C:0.00, G:0.21, T:0.76
Consensus pattern (17 bp):
TTTGATTTTGGTTTTTT
Found at i:6996692 original size:20 final size:20
Alignment explanation
Indices: 6996653--6996692 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
6996643 GAAGCTCAAC
*
6996653 AAAAATAAATTGAAACATCA
1 AAAAATAAATTCAAACATCA
* *
6996673 AAAAATAACTTCAAATATCA
1 AAAAATAAATTCAAACATCA
6996693 CAACCGAAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.62, C:0.12, G:0.03, T:0.23
Consensus pattern (20 bp):
AAAAATAAATTCAAACATCA
Found at i:6996864 original size:42 final size:42
Alignment explanation
Indices: 6996799--6996895 Score: 135
Period size: 42 Copynumber: 2.3 Consensus size: 42
6996789 AAGAAAACTT
*
6996799 GAATATCACCATCGAGAAAATGTAATTCAAGCTTTAACACTCA
1 GAATATCACTATCGAGAAAATGTAATTCAAGCTTTAACACT-A
* *
6996842 G-ATATCACTATCGA-AAAGATGTAATTCTAGCTTTAACACTT
1 GAATATCACTATCGAGAAA-ATGTAATTCAAGCTTTAACACTA
6996883 GAATATCACTATC
1 GAATATCACTATC
6996896 AAGAGGATGC
Statistics
Matches: 49, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
41 4 0.08
42 44 0.90
43 1 0.02
ACGTcount: A:0.39, C:0.20, G:0.11, T:0.30
Consensus pattern (42 bp):
GAATATCACTATCGAGAAAATGTAATTCAAGCTTTAACACTA
Found at i:6996983 original size:41 final size:41
Alignment explanation
Indices: 6996938--6997015 Score: 129
Period size: 41 Copynumber: 1.9 Consensus size: 41
6996928 CGAGAATACA
* * *
6996938 CAAATGATTTTTAATATTCGAATATCACCACTGAGAAAATG
1 CAAATGATTTTTAACAGTCGAATATCACCACTAAGAAAATG
6996979 CAAATGATTTTTAACAGTCGAATATCACCACTAAGAA
1 CAAATGATTTTTAACAGTCGAATATCACCACTAAGAA
6997016 GATGTAATTC
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 34 1.00
ACGTcount: A:0.42, C:0.17, G:0.12, T:0.29
Consensus pattern (41 bp):
CAAATGATTTTTAACAGTCGAATATCACCACTAAGAAAATG
Found at i:6997251 original size:42 final size:42
Alignment explanation
Indices: 6997192--6997294 Score: 140
Period size: 42 Copynumber: 2.5 Consensus size: 42
6997182 AAAATGTCTT
* *
6997192 GATATCACCACTAAGAAAATGA-AATTCAAGCTTTAACACTTG
1 GATATCACCACCAAGAAAAT-ACAATTCAAGCTTTAACACTTA
* *
6997234 GATATCACTACCAAGAAAATACAATTCCAGCTTTAACACTTA
1 GATATCACCACCAAGAAAATACAATTCAAGCTTTAACACTTA
6997276 GATATCACCA-CAA-AAAATA
1 GATATCACCACCAAGAAAATA
6997295 TACAAATGAT
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
40 6 0.11
41 4 0.07
42 45 0.82
ACGTcount: A:0.46, C:0.21, G:0.09, T:0.24
Consensus pattern (42 bp):
GATATCACCACCAAGAAAATACAATTCAAGCTTTAACACTTA
Found at i:6997321 original size:40 final size:41
Alignment explanation
Indices: 6997277--6997376 Score: 114
Period size: 40 Copynumber: 2.4 Consensus size: 41
6997267 TAACACTTAG
*
6997277 ATATCACCACAAAAAATATACAAATGATTTTTAATACTC-A
1 ATATCACCACAAAAAATATACAAATAATTTTTAATACTCGA
* * * *
6997317 ATATCATCATCATAAAA-ATGCAAATAATTTTTAATACTCGG
1 ATATCACCA-CAAAAAATATACAAATAATTTTTAATACTCGA
6997358 ATATCACCACTAAGAAAAT
1 ATATCACCAC-AA-AAAAT
6997377 GTAATTCCAT
Statistics
Matches: 48, Mismatches: 7, Indels: 7
0.77 0.11 0.11
Matches are distributed among these distances:
40 29 0.60
41 15 0.31
42 4 0.08
ACGTcount: A:0.48, C:0.17, G:0.05, T:0.30
Consensus pattern (41 bp):
ATATCACCACAAAAAATATACAAATAATTTTTAATACTCGA
Found at i:6997662 original size:38 final size:35
Alignment explanation
Indices: 6997620--6997701 Score: 94
Period size: 35 Copynumber: 2.3 Consensus size: 35
6997610 CACCATTACG
6997620 ATGCAAATGACTTCTCTTAAAATGATGATGCAAATGAA
1 ATGCAAATGACTTCTCTT-AAA--ATGATGCAAATGAA
** *
6997658 ATGCAAAAT-TTTTTTCTTAAAATGATGCAAATGAA
1 ATGC-AAATGACTTCTCTTAAAATGATGCAAATGAA
6997693 ATGCAAATG
1 ATGCAAATG
6997702 TCTTTTACAA
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
34 4 0.10
35 18 0.46
37 3 0.08
38 10 0.26
39 4 0.10
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.32
Consensus pattern (35 bp):
ATGCAAATGACTTCTCTTAAAATGATGCAAATGAA
Found at i:6997715 original size:35 final size:35
Alignment explanation
Indices: 6997644--6997716 Score: 96
Period size: 35 Copynumber: 2.1 Consensus size: 35
6997634 TCTTAAAATG
* *
6997644 ATGATGCAAATGAAATGCAAAATTTTTTTCTTAAA
1 ATGATGCAAATGAAATGCAAAATTTTTTACTAAAA
6997679 ATGATGCAAATGAAATGC-AAATGTCTTTTAC-AAAA
1 ATGATGCAAATGAAATGCAAAAT-T-TTTTACTAAAA
6997714 ATG
1 ATG
6997717 CCAATACATA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
34 4 0.12
35 25 0.74
36 5 0.15
ACGTcount: A:0.44, C:0.10, G:0.14, T:0.33
Consensus pattern (35 bp):
ATGATGCAAATGAAATGCAAAATTTTTTACTAAAA
Found at i:7006952 original size:61 final size:61
Alignment explanation
Indices: 7006873--7006993 Score: 145
Period size: 61 Copynumber: 2.0 Consensus size: 61
7006863 ACATTTGGCA
** * * *
7006873 TAAAAAAATACCTAAAATAATCCTGTTTAATTTTTTTGAA-ATTATTTAAGGCTTTTTTGG
1 TAAAAAAATACCTAAAATAATCCTAATCAATTTTTTTAAAGATTATTTAAGGCATTTTTGG
* * *
7006933 TAAACAAAGTACCTTAAATAATGCTAATCAATTTTTTTAAAGGATTATTTAAGGCATTTTT
1 TAAA-AAAATACCTAAAATAATCCTAATCAATTTTTTTAAA-GATTATTTAAGGCATTTTT
7006994 AGTTAGAAAA
Statistics
Matches: 50, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
60 4 0.08
61 29 0.58
63 17 0.34
ACGTcount: A:0.38, C:0.09, G:0.10, T:0.43
Consensus pattern (61 bp):
TAAAAAAATACCTAAAATAATCCTAATCAATTTTTTTAAAGATTATTTAAGGCATTTTTGG
Found at i:7007925 original size:21 final size:21
Alignment explanation
Indices: 7007875--7007934 Score: 50
Period size: 23 Copynumber: 2.8 Consensus size: 21
7007865 TATTAATAAA
*
7007875 AATTAATAAAAAATTATCATC
1 AATTATTAAAAAATTATCATC
*
7007896 ATATATATTAAAAAAGTTATGAT-
1 A-AT-TATTAAAAAA-TTATCATC
* *
7007919 AATTATTTATAAATTA
1 AATTATTAAAAAATTA
7007935 ATAAATATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 7
0.74 0.09 0.16
Matches are distributed among these distances:
20 3 0.09
21 9 0.28
22 4 0.12
23 10 0.31
24 6 0.19
ACGTcount: A:0.53, C:0.03, G:0.03, T:0.40
Consensus pattern (21 bp):
AATTATTAAAAAATTATCATC
Found at i:7009052 original size:2 final size:2
Alignment explanation
Indices: 7009045--7009070 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7009035 AGTATCCAAA
7009045 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
7009071 TGTAAATAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:7012231 original size:2 final size:2
Alignment explanation
Indices: 7012224--7012248 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
7012214 AATTAATCTC
7012224 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
7012249 ATTCAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7014013 original size:11 final size:10
Alignment explanation
Indices: 7013988--7014021 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
7013978 TTTACTATTG
7013988 ATTTTTTAAA
1 ATTTTTTAAA
7013998 ATTTTTTAAA
1 ATTTTTTAAA
7014008 ATTTTTT-AA
1 ATTTTTTAAA
7014017 ATTTT
1 ATTTT
7014022 AGTTTTATGG
Statistics
Matches: 24, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 7 0.29
10 17 0.71
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (10 bp):
ATTTTTTAAA
Found at i:7014204 original size:14 final size:15
Alignment explanation
Indices: 7014179--7014207 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
7014169 TTTTATTATG
7014179 TTTATATTTTTTAAT
1 TTTATATTTTTTAAT
7014194 TTTAT-TTTTTTAAT
1 TTTATATTTTTTAAT
7014208 CTTGATTTAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 9 0.64
15 5 0.36
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (15 bp):
TTTATATTTTTTAAT
Found at i:7015158 original size:7 final size:7
Alignment explanation
Indices: 7015146--7015181 Score: 51
Period size: 7 Copynumber: 5.6 Consensus size: 7
7015136 TAATAATAAT
7015146 AATATTA
1 AATATTA
7015153 AATATTA
1 AATATTA
7015160 AATA--A
1 AATATTA
7015165 AATATTA
1 AATATTA
7015172 AAT-TTA
1 AATATTA
7015178 AATA
1 AATA
7015182 ATAATAAAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
5 5 0.19
6 6 0.23
7 15 0.58
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (7 bp):
AATATTA
Found at i:7015451 original size:21 final size:21
Alignment explanation
Indices: 7015412--7015451 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
7015402 GGGAAAAGCT
**
7015412 TACCAAAAAAAAATCAAAAAC
1 TACCAAAAAAAAAAAAAAAAC
7015433 TACCAAAAAAAAAAAAAAA
1 TACCAAAAAAAAAAAAAAA
7015452 GGCTTTTGTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.78, C:0.15, G:0.00, T:0.07
Consensus pattern (21 bp):
TACCAAAAAAAAAAAAAAAAC
Found at i:7016575 original size:17 final size:17
Alignment explanation
Indices: 7016553--7016608 Score: 60
Period size: 17 Copynumber: 3.2 Consensus size: 17
7016543 TTTTATAAAA
7016553 TAAAAATAAAAATTAAT
1 TAAAAATAAAAATTAAT
* *
7016570 TAAAAATAAAAAATAAC
1 TAAAAATAAAAATTAAT
7016587 TAGAAAATATTAAAATT-AT
1 TA-AAAATA--AAAATTAAT
7016606 TAA
1 TAA
7016609 TAAAAATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
17 17 0.53
18 7 0.22
19 3 0.09
20 5 0.16
ACGTcount: A:0.68, C:0.02, G:0.02, T:0.29
Consensus pattern (17 bp):
TAAAAATAAAAATTAAT
Found at i:7016618 original size:9 final size:9
Alignment explanation
Indices: 7016557--7016624 Score: 50
Period size: 9 Copynumber: 7.0 Consensus size: 9
7016547 ATAAAATAAA
7016557 AATAAAAATT
1 AATAAAAA-T
7016567 AATTAAAAAT
1 AA-TAAAAAT
7016577 -A-AAAAAT
1 AATAAAAAT
7016584 AACTAGAAAAT
1 AA-TA-AAAAT
*
7016595 ATTAAAATTATT
1 AATAAAA--A-T
7016607 AATAAAAAT
1 AATAAAAAT
7016616 AATAAAAAT
1 AATAAAAAT
7016625 GAGGGAAAAG
Statistics
Matches: 48, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
7 6 0.12
8 1 0.02
9 14 0.29
10 7 0.15
11 13 0.27
12 7 0.15
ACGTcount: A:0.69, C:0.01, G:0.01, T:0.28
Consensus pattern (9 bp):
AATAAAAAT
Found at i:7017313 original size:18 final size:17
Alignment explanation
Indices: 7017269--7017317 Score: 53
Period size: 18 Copynumber: 2.8 Consensus size: 17
7017259 TATCTTTTTT
*
7017269 AATAAATTTTAATTAAT
1 AATAAATTTTAATTAAA
**
7017286 TTTAAGATTTTAATTAAAA
1 AATAA-ATTTTAATT-AAA
7017305 AATAAATTTTAAT
1 AATAAATTTTAAT
7017318 AGGTAGCTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
17 3 0.12
18 17 0.68
19 5 0.20
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (17 bp):
AATAAATTTTAATTAAA
Found at i:7017774 original size:17 final size:17
Alignment explanation
Indices: 7017734--7017774 Score: 50
Period size: 16 Copynumber: 2.5 Consensus size: 17
7017724 ATTTTCTTCT
*
7017734 ATTTA-TATTTTTTAAA
1 ATTTATTATTTATTAAA
*
7017750 A-CTATTATTTATTAAA
1 ATTTATTATTTATTAAA
7017766 ATTTATTAT
1 ATTTATTAT
7017775 AACTTTTAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 3
0.77 0.12 0.12
Matches are distributed among these distances:
15 2 0.10
16 12 0.60
17 6 0.30
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (17 bp):
ATTTATTATTTATTAAA
Found at i:7020129 original size:2 final size:2
Alignment explanation
Indices: 7020122--7020160 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
7020112 ACGTTTTGTG
7020122 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7020161 TAATATAATT
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:7022218 original size:17 final size:18
Alignment explanation
Indices: 7022196--7022230 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
7022186 AAACTATTAA
7022196 TGATAAT-TTAAGAATAT
1 TGATAATATTAAGAATAT
7022213 TGATAATATTAAGAATAT
1 TGATAATATTAAGAATAT
7022231 ATATGTTAGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.49, C:0.00, G:0.11, T:0.40
Consensus pattern (18 bp):
TGATAATATTAAGAATAT
Found at i:7027756 original size:29 final size:29
Alignment explanation
Indices: 7027693--7027761 Score: 75
Period size: 29 Copynumber: 2.3 Consensus size: 29
7027683 ATAACTAATG
7027693 AATTATAGTAAAATATTTAATATGATACTTA
1 AATTATA--AAAATATTTAATATGATACTTA
* * * * *
7027724 AATTTTAAAAATTTTTAATGTGATATTTG
1 AATTATAAAAATATTTAATATGATACTTA
7027753 AATTATAAA
1 AATTATAAA
7027762 TTTGTTAATT
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
29 26 0.81
31 6 0.19
ACGTcount: A:0.46, C:0.01, G:0.07, T:0.45
Consensus pattern (29 bp):
AATTATAAAAATATTTAATATGATACTTA
Found at i:7032258 original size:93 final size:93
Alignment explanation
Indices: 7032144--7032414 Score: 280
Period size: 93 Copynumber: 2.9 Consensus size: 93
7032134 TTATTCATAA
* * * * * *
7032144 ATTTTTT-TGAAATAACCATTAAAACTTCAAATATTTTGGTAAGATTTAATTTGATATTTAAATC
1 ATTTTTTAT-AAA-AACTATTAAAACTTCAAATAGTTTGATAAAATTTAATTTGAAATTTAAATA
* *
7032208 CTCTAATAATTTGGTAGAATTGAAAATTTT
64 ATCTAATAATTTGGTAGAATTAAAAATTTT
* * *
7032238 ATTTTTTATAAAAACTATTAAACCTTCAAATAGGTTGATAATATTTAATTTGAAATTTAAATAAT
1 ATTTTTTATAAAAACTATTAAAACTTCAAATAGTTTGATAAAATTTAATTTGAAATTTAAATAAT
* * *
7032303 -TCAATAGTTTGGTTGGATTAAAAATTTT
66 CT-AATAATTTGGTAGAATTAAAAATTTT
* ** * * *
7032331 ATTTTTGATAAAATTTATTAAATCTTTC-AATAGTTTGATAAAATTT-ATTTTAAATTTTAAATT
1 ATTTTTTATAAAAACTATTAAAAC-TTCAAATAGTTTGATAAAATTTAATTTGAAA-TTTAAATA
*
7032394 TTCTAATAATTTGGTAGAATT
64 ATCTAATAATTTGGTAGAATT
7032415 CGATCTCAAA
Statistics
Matches: 147, Mismatches: 25, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
92 8 0.05
93 124 0.84
94 14 0.10
95 1 0.01
ACGTcount: A:0.39, C:0.06, G:0.09, T:0.46
Consensus pattern (93 bp):
ATTTTTTATAAAAACTATTAAAACTTCAAATAGTTTGATAAAATTTAATTTGAAATTTAAATAAT
CTAATAATTTGGTAGAATTAAAAATTTT
Found at i:7033779 original size:4 final size:4
Alignment explanation
Indices: 7033772--7033936 Score: 60
Period size: 4 Copynumber: 40.5 Consensus size: 4
7033762 CTTTATTTTT
* *
7033772 TTTA TTTA TTT- TATA TTT- TATA TTT- TATTA TTTA TTTTA TTTTA TATTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA -TTTA -TTTA T-TTA
* * *
7033821 TATA TATA TTCT- TTATA TCTTA TGTA TTT- TTTA TTTA TTT- TTTA TTACTA
1 TTTA TTTA TT-TA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA
* * * * * *
7033871 TTTA TTTTT TTTA TGTTA -ATA TATA TTTTA TTTA TCTA GTTA TATA TTTA
1 TTTA -TTTA TTTA T-TTA TTTA TTTA -TTTA TTTA TTTA TTTA TTTA TTTA
7033921 -TTA -TTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TT
7033937 GTAATTTATC
Statistics
Matches: 124, Mismatches: 19, Indels: 36
0.69 0.11 0.20
Matches are distributed among these distances:
3 19 0.15
4 72 0.58
5 28 0.23
6 5 0.04
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (4 bp):
TTTA
Found at i:7033905 original size:69 final size:70
Alignment explanation
Indices: 7033774--7033936 Score: 172
Period size: 69 Copynumber: 2.3 Consensus size: 70
7033764 TTATTTTTTT
* * *
7033774 TATTTATTTTATATTTTATATT-TTATTATTTATTTTATTTTATATTATATATATATTCTTTATA
1 TATTTATTAT-TA-TTTAT-TTATTACTATTTATTTTATTTTATATTATATATATATTATTTATA
*
7033838 T-CTTATG
63 TACTTATA
* * * *
7033845 TATTTTTTATTTATTT-TTTATTACTATTTATTTT-TTTTATGTTAATATATATTTTATTTATCT
1 TATTTATTA-TTATTTATTTATTACTATTTATTTTATTTTATATT-ATATATATATTATTTATAT
*
7033908 AGTTATA
64 ACTTATA
7033915 TATTTATTATTATTTATTTATT
1 TATTTATTATTATTTATTTATT
7033937 GTAATTTATC
Statistics
Matches: 77, Mismatches: 10, Indels: 11
0.79 0.10 0.11
Matches are distributed among these distances:
68 10 0.13
69 36 0.47
70 21 0.27
71 9 0.12
72 1 0.01
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (70 bp):
TATTTATTATTATTTATTTATTACTATTTATTTTATTTTATATTATATATATATTATTTATATAC
TTATA
Found at i:7033931 original size:7 final size:7
Alignment explanation
Indices: 7033763--7033936 Score: 53
Period size: 7 Copynumber: 23.9 Consensus size: 7
7033753 GTAGGTTCAC
7033763 TTTATT-
1 TTTATTA
*
7033769 TTTTTTA
1 TTTATTA
7033776 TTTA-T-
1 TTTATTA
7033781 TTTA-TA
1 TTTATTA
7033787 TTT-TATA
1 TTTAT-TA
7033794 TTTTATTA
1 -TTTATTA
7033802 TTTATT-
1 TTTATTA
*
7033808 TTATTTTA
1 TT-TATTA
7033816 TATTATATA
1 T-TTAT-TA
* *
7033825 TATATTC
1 TTTATTA
7033832 TTTA-TA
1 TTTATTA
7033838 TCTTATGTA
1 T-TTAT-TA
*
7033847 TTTTTTA
1 TTTATTA
*
7033854 TTTATTT
1 TTTATTA
7033861 TTTATTACTA
1 TTTA-T--TA
7033871 TTTATT-
1 TTTATTA
*
7033877 TTTTTTA
1 TTTATTA
7033884 TGTTAATATA
1 T-TT-AT-TA
7033894 TATT-TTA
1 T-TTATTA
7033901 TTTATCTA
1 TTTAT-TA
*
7033909 GTTATATA
1 TTTAT-TA
7033917 TTTATTA
1 TTTATTA
7033924 -TTATTTA
1 TTTA-TTA
7033931 TTTATT
1 TTTATT
7033937 GTAATTTATC
Statistics
Matches: 126, Mismatches: 18, Indels: 47
0.66 0.09 0.25
Matches are distributed among these distances:
5 5 0.04
6 23 0.18
7 45 0.36
8 33 0.26
9 10 0.08
10 10 0.08
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (7 bp):
TTTATTA
Found at i:7033982 original size:20 final size:20
Alignment explanation
Indices: 7033957--7034011 Score: 71
Period size: 17 Copynumber: 2.9 Consensus size: 20
7033947 TAGTATTATT
7033957 TTTATCTGTTAATATTTTGA
1 TTTATCTGTTAATATTTTGA
*
7033977 TTTATCTGTT--T-TTTTTA
1 TTTATCTGTTAATATTTTGA
*
7033994 ATTATCTGTTAATATTTT
1 TTTATCTGTTAATATTTT
7034012 TTTTATTTTA
Statistics
Matches: 30, Mismatches: 2, Indels: 6
0.79 0.05 0.16
Matches are distributed among these distances:
17 14 0.47
18 1 0.03
19 1 0.03
20 14 0.47
ACGTcount: A:0.22, C:0.05, G:0.07, T:0.65
Consensus pattern (20 bp):
TTTATCTGTTAATATTTTGA
Found at i:7034867 original size:6 final size:6
Alignment explanation
Indices: 7034853--7034991 Score: 63
Period size: 6 Copynumber: 22.7 Consensus size: 6
7034843 CCGTTTCAGG
* * *
7034853 TTTTT- TTTTTA TTTTT- TTTATTT TTTTTA TATATTTA -TATTA TTATTA
1 TTTTTA TTTTTA TTTTTA TTT-TTA TTTTTA T-T-TTTA TTTTTA TTTTTA
* * * * * * *
7034901 TTATTA TTATTA TTATTA TTATTA TATTTG TTTGATATT TTTTTA TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTT--T-TA TTTTTA TTTTTA
* *
7034952 TCTTTA -TTTTA TTTTTA -TTTTG TTTTTA TTATTTTA TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA -T-TTTTA TTTT
7034992 CTTTAAATAA
Statistics
Matches: 109, Mismatches: 12, Indels: 25
0.75 0.08 0.17
Matches are distributed among these distances:
5 19 0.17
6 69 0.63
7 7 0.06
8 10 0.09
9 4 0.04
ACGTcount: A:0.21, C:0.01, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:7034869 original size:9 final size:9
Alignment explanation
Indices: 7034855--7034996 Score: 67
Period size: 9 Copynumber: 16.0 Consensus size: 9
7034845 GTTTCAGGTT
7034855 TTTTTTTTA
1 TTTTTTTTA
7034864 TTTTTTTTA
1 TTTTTTTTA
7034873 TTTTTTTTA
1 TTTTTTTTA
* *
7034882 TATATTTATA
1 T-TTTTTTTA
* *
7034892 TTATTATTA
1 TTTTTTTTA
* *
7034901 TTATTATTA
1 TTTTTTTTA
* *
7034910 TTATTATTA
1 TTTTTTTTA
* *
7034919 -TTATTATA
1 TTTTTTTTA
* *
7034927 TTTGTTTGA
1 TTTTTTTTA
7034936 TATTTTTTTA
1 T-TTTTTTTA
* *
7034946 -TTTTTATC
1 TTTTTTTTA
*
7034954 TTTATTTTA
1 TTTTTTTTA
*
7034963 TTTTTATT-
1 TTTTTTTTA
*
7034971 TTGTTTTTA
1 TTTTTTTTA
*
7034980 -TTATTTTA
1 TTTTTTTTA
*
7034988 TTTTCTTTA
1 TTTTTTTTA
7034997 AATAAAATCC
Statistics
Matches: 101, Mismatches: 26, Indels: 12
0.73 0.19 0.09
Matches are distributed among these distances:
8 22 0.22
9 66 0.65
10 13 0.13
ACGTcount: A:0.21, C:0.01, G:0.02, T:0.75
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:7034896 original size:3 final size:3
Alignment explanation
Indices: 7034890--7034925 Score: 72
Period size: 3 Copynumber: 12.0 Consensus size: 3
7034880 TATATATTTA
7034890 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
7034926 ATTTGTTTGA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:7035684 original size:22 final size:20
Alignment explanation
Indices: 7035655--7035694 Score: 53
Period size: 22 Copynumber: 1.9 Consensus size: 20
7035645 TTGTATATAT
*
7035655 TTTATTTATTCATTCATGTTA
1 TTTATTTATTAATT-ATGTTA
7035676 TTTACTTTATTAATTATGT
1 TTTA-TTTATTAATTATGT
7035695 CATTCATATG
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 8 0.47
22 9 0.53
ACGTcount: A:0.25, C:0.07, G:0.05, T:0.62
Consensus pattern (20 bp):
TTTATTTATTAATTATGTTA
Found at i:7044435 original size:35 final size:36
Alignment explanation
Indices: 7044396--7044590 Score: 126
Period size: 35 Copynumber: 5.6 Consensus size: 36
7044386 TGCGACTTTA
* * *
7044396 AATTAAAGAGATCAAGATTGAACTACGAATC-GAAG
1 AATTAAAAAGATCAAGATTAAACCACGAATCAGAAG
*
7044431 AATTAAAAAGATCAGGATTAAACCACGAATCAGAAG
1 AATTAAAAAGATCAAGATTAAACCACGAATCAGAAG
* * * ***
7044467 -A-TAACAACA-ATCGAGATTAAACTATG-AT-TTTA-
1 AATTAA-AA-AGATCAAGATTAAACCACGAATCAGAAG
* ** *
7044499 AATTGAAAAGATCGGGATTGAACCACGAATC-GAAG
1 AATTAAAAAGATCAAGATTAAACCACGAATCAGAAG
* *
7044534 AA-TAAAAAGATCAAAATTAAACCATGAATCAGAAG
1 AATTAAAAAGATCAAGATTAAACCACGAATCAGAAG
7044569 -A-TAACAACA-ATCAAGATTAAAC
1 AATTAA-AA-AGATCAAGATTAAAC
7044591 TGTGATTTTA
Statistics
Matches: 123, Mismatches: 25, Indels: 24
0.72 0.15 0.14
Matches are distributed among these distances:
32 1 0.01
33 17 0.14
34 36 0.29
35 63 0.51
36 6 0.05
ACGTcount: A:0.51, C:0.13, G:0.15, T:0.20
Consensus pattern (36 bp):
AATTAAAAAGATCAAGATTAAACCACGAATCAGAAG
Found at i:7044518 original size:103 final size:103
Alignment explanation
Indices: 7044336--7044871 Score: 704
Period size: 103 Copynumber: 5.2 Consensus size: 103
7044326 AAAAACGATG
* * * * * *
7044336 AGATCGGGATTAAACCACGAGTAAAAAGATAACAACAATCGAGATTAAACTGCGACTTTAAATT-
1 AGATCAGGATTAAACCACGAATCAGAAGATAACAACAATCGAGATTAAACTGTGATTTTAAATTG
** **
7044400 AAAGAGATCAAGATTGAACTACGAATCGAAGAATTAAAA
66 AAA-AGATCGGGATTGAACCGCGAATCGAAGAATTAAAA
*
7044439 AGATCAGGATTAAACCACGAATCAGAAGATAACAACAATCGAGATTAAACTATGATTTTAAATTG
1 AGATCAGGATTAAACCACGAATCAGAAGATAACAACAATCGAGATTAAACTGTGATTTTAAATTG
*
7044504 AAAAGATCGGGATTGAACCACGAATCGAAGAA-TAAAA
66 AAAAGATCGGGATTGAACCGCGAATCGAAGAATTAAAA
** * *
7044541 AGATCAAAATTAAACCATGAATCAGAAGATAACAACAATCAAGATTAAACTGTGATTTTAAATTG
1 AGATCAGGATTAAACCACGAATCAGAAGATAACAACAATCGAGATTAAACTGTGATTTTAAATTG
* * *
7044606 AAAAGATCGAGATTGAACGGTGAATCGAAGAATTAAAA
66 AAAAGATCGGGATTGAACCGCGAATCGAAGAATTAAAA
* * * * *
7044644 AGATCATGATTAAACTACAAATAAGAAGATAACAACAATCAAGATTAAACTGTGATTTTAAATTG
1 AGATCAGGATTAAACCACGAATCAGAAGATAACAACAATCGAGATTAAACTGTGATTTTAAATTG
* * *
7044709 AAGAGATTGGGATTGAACCGTGAATCGAAGAATTAAAA
66 AAAAGATCGGGATTGAACCGCGAATCGAAGAATTAAAA
* * *
7044747 AGATC-GATATTAAATCACGAATCA-AAGATAACAACAATCGAGATTAAACCGTGATTTTAAATT
1 AGATCAG-GATTAAACCACGAATCAGAAGATAACAACAATCGAGATTAAACTGTGATTTTAAATT
* *
7044810 GAAAAGATCGGGATTGAATCGCGAATTGAAGAA-TAAAA
65 GAAAAGATCGGGATTGAACCGCGAATCGAAGAATTAAAA
** *
7044848 AGATTGGGATTAAACCACAAATCA
1 AGATCAGGATTAAACCACGAATCA
7044872 AATATTAACG
Statistics
Matches: 383, Mismatches: 46, Indels: 10
0.87 0.10 0.02
Matches are distributed among these distances:
101 23 0.06
102 159 0.42
103 198 0.52
104 3 0.01
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.23
Consensus pattern (103 bp):
AGATCAGGATTAAACCACGAATCAGAAGATAACAACAATCGAGATTAAACTGTGATTTTAAATTG
AAAAGATCGGGATTGAACCGCGAATCGAAGAATTAAAA
Found at i:7044588 original size:205 final size:205
Alignment explanation
Indices: 7044344--7044871 Score: 740
Period size: 205 Copynumber: 2.6 Consensus size: 205
7044334 TGAGATCGGG
* * * *
7044344 ATTAAACCACGAGTAAAAAGATAACAACAATCGAGATTAAACTGCGACTTTAAATT-AAAGAGAT
1 ATTAAACCACGAAT-CAAAGATAACAACAATCGAGATTAAACTGTGATTTTAAATTGAAA-AGAT
* * *
7044408 CAAGATTGAACTACGAATCGAAGAATTAAAAAGATCAGGATTAAACCACGAATCAGAAGATAACA
64 CGAGATTGAACTGCGAATCGAAGAATTAAAAAGATCAGGATTAAACCACAAATCAGAAGATAACA
*
7044473 ACAATCGAGATTAAACTATGATTTTAAATTGAAAAGATCGGGATTGAACCACGAATCGAAGAA-T
129 ACAATCAAGATTAAACTATGATTTTAAATTGAAAAGATCGGGATTGAACCACGAATCGAAGAATT
7044537 AAAAAGATCAAA
194 AAAAAGATCAAA
* *
7044549 ATTAAACCATGAATCAGAAGATAACAACAATCAAGATTAAACTGTGATTTTAAATTGAAAAGATC
1 ATTAAACCACGAATCA-AAGATAACAACAATCGAGATTAAACTGTGATTTTAAATTGAAAAGATC
* * * * *
7044614 GAGATTGAACGGTGAATCGAAGAATTAAAAAGATCATGATTAAACTACAAATAAGAAGATAACAA
65 GAGATTGAACTGCGAATCGAAGAATTAAAAAGATCAGGATTAAACCACAAATCAGAAGATAACAA
* * * **
7044679 CAATCAAGATTAAACTGTGATTTTAAATTGAAGAGATTGGGATTGAACCGTGAATCGAAGAATTA
130 CAATCAAGATTAAACTATGATTTTAAATTGAAAAGATCGGGATTGAACCACGAATCGAAGAATTA
* *
7044744 AAAAGATCGAT
195 AAAAGATCAAA
* *
7044755 ATTAAATCACGAATCAAAGATAACAACAATCGAGATTAAACCGTGATTTTAAATTGAAAAGATCG
1 ATTAAACCACGAATCAAAGATAACAACAATCGAGATTAAACTGTGATTTTAAATTGAAAAGATCG
* * **
7044820 GGATTGAA-TCGCGAATTGAAGAA-TAAAAAGATTGGGATTAAACCACAAATCA
66 AGATTGAACT-GCGAATCGAAGAATTAAAAAGATCAGGATTAAACCACAAATCA
7044872 AATATTAACG
Statistics
Matches: 284, Mismatches: 35, Indels: 9
0.87 0.11 0.03
Matches are distributed among these distances:
204 25 0.09
205 231 0.81
206 28 0.10
ACGTcount: A:0.48, C:0.12, G:0.17, T:0.23
Consensus pattern (205 bp):
ATTAAACCACGAATCAAAGATAACAACAATCGAGATTAAACTGTGATTTTAAATTGAAAAGATCG
AGATTGAACTGCGAATCGAAGAATTAAAAAGATCAGGATTAAACCACAAATCAGAAGATAACAAC
AATCAAGATTAAACTATGATTTTAAATTGAAAAGATCGGGATTGAACCACGAATCGAAGAATTAA
AAAGATCAAA
Found at i:7045009 original size:73 final size:73
Alignment explanation
Indices: 7044855--7045273 Score: 455
Period size: 73 Copynumber: 5.7 Consensus size: 73
7044845 AAAAGATTGG
** * * * * * * ** *
7044855 GATTAAACCACAAATCAAATATTAACGATGACTGGGACTAAATCGCAAGTAAAGGGAATTAATGA
1 GATTAAACCATGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGT-CAGAAAAATAATGA
*
7044920 AATGACCGA
65 AATGATCGA
* * * * * * * *
7044929 GATTAAATCGTGAGTTAATGATAAAAAATGACTGGGACTGAACCGTAAGTTAGAAAAATAATGAA
1 GATTAAACCATGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAAAAATAATGAA
*
7044994 ATGA-CTTA
66 ATGATC-GA
* * * *
7045002 TATTAAATCGTGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAGAAATAATGAA
1 GATTAAACCATGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAAAAATAATGAA
*
7045067 ATGATCAA
66 ATGATCGA
* *
7045075 GATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTAAGAAAAATAATGAA
1 GATTAAACCATGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAAAAATAATGAA
7045140 ATGATCGA
66 ATGATCGA
* * *
7045148 GATTAAACCATGAGTCAAAGATTAAAGATGACTAGGACTGAACCGTAAGTCAGAGAAATAATGAA
1 GATTAAACCATGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAAAAATAATGAA
*
7045213 ATGATCGG
66 ATGATCGA
** * * * *
7045221 GATTAAACCACAAGCCAAATGA-TAAAGATGACTGAGATTGACCCGCAAGTCAG
1 GATTAAACCATGAGTCAAA-GATTAAAGATGACTGGGACTGAACCGCAAGTCAG
7045274 GGAACTATAT
Statistics
Matches: 293, Mismatches: 49, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
72 1 0.00
73 253 0.86
74 39 0.13
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (73 bp):
GATTAAACCATGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGTCAGAAAAATAATGAA
ATGATCGA
Found at i:7045053 original size:35 final size:35
Alignment explanation
Indices: 7045014--7045124 Score: 98
Period size: 35 Copynumber: 3.1 Consensus size: 35
7045004 TTAAATCGTG
7045014 AGTCAAAGATTAAAGATGACTGGGACTGAACCGCA
1 AGTCAAAGATTAAAGATGACTGGGACTGAACCGCA
* * * ** * * * *
7045049 AGTCAGAGAAATAATGAAATGA-TCAAGATTAAACCACG
1 AGTCAAAG-ATTAA--AGATGACT-GGGACTGAACCGCA
7045087 AGTCAAAGATTAAAGATGACTGGGACTGAACCGCA
1 AGTCAAAGATTAAAGATGACTGGGACTGAACCGCA
7045122 AGT
1 AGT
7045125 AAGAAAAATA
Statistics
Matches: 53, Mismatches: 18, Indels: 10
0.65 0.22 0.12
Matches are distributed among these distances:
35 23 0.43
36 5 0.09
37 5 0.09
38 20 0.38
ACGTcount: A:0.43, C:0.15, G:0.23, T:0.18
Consensus pattern (35 bp):
AGTCAAAGATTAAAGATGACTGGGACTGAACCGCA
Found at i:7045249 original size:219 final size:220
Alignment explanation
Indices: 7044855--7045273 Score: 529
Period size: 219 Copynumber: 1.9 Consensus size: 220
7044845 AAAAGATTGG
* * * ** *
7044855 GATTAAACCACAAATCAAATATTAACGATGACTGGGACTAAATCGCAAGTAAAGGGAATTAATGA
1 GATTAAACCACAAATCAAAGATTAAAGATGACTGGGACTAAACCGCAAGTAAAGAAAAATAATGA
* * * * * *
7044920 AATGACCGAGATTAAATCGTGAGTTAATGATAAAAAATGACTGGGACTGAACCGTAAGTTAGAAA
66 AATGACCGAGATTAAACCATGAGTCAAAGATAAAAAATGACTAGGACTGAACCGTAAGTCAGAAA
* * * *** * *
7044985 AATAATGAAATGACTTATATTAAATCGTGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAA
131 AATAATGAAATGACTGAGATTAAACCACAAGCCAAAGATTAAAGATGACTGAGACTGAACCGCAA
7045050 GTCAGAGAAATAATGAAATGATCAA
196 GTCAGAGAAATAATGAAATGATCAA
* * *
7045075 GATTAAACCACGAGTCAAAGATTAAAGATGACTGGGACTGAACCGCAAGT-AAGAAAAATAATGA
1 GATTAAACCACAAATCAAAGATTAAAGATGACTGGGACTAAACCGCAAGTAAAGAAAAATAATGA
* * * *
7045139 AATGATCGAGATTAAACCATGAGTCAAAGATTAAAGATGACTAGGACTGAACCGTAAGTCAGAGA
66 AATGACCGAGATTAAACCATGAGTCAAAGATAAAAAATGACTAGGACTGAACCGTAAGTCAGAAA
* * *
7045204 AATAATGAAATGA-TCGGGATTAAACCACAAGCCAAATGA-TAAAGATGACTGAGATTGACCCGC
131 AATAATGAAATGACT-GAGATTAAACCACAAGCCAAA-GATTAAAGATGACTGAGACTGAACCGC
7045267 AAGTCAG
194 AAGTCAG
7045274 GGAACTATAT
Statistics
Matches: 167, Mismatches: 30, Indels: 5
0.83 0.15 0.02
Matches are distributed among these distances:
218 1 0.01
219 120 0.72
220 46 0.28
ACGTcount: A:0.45, C:0.13, G:0.21, T:0.21
Consensus pattern (220 bp):
GATTAAACCACAAATCAAAGATTAAAGATGACTGGGACTAAACCGCAAGTAAAGAAAAATAATGA
AATGACCGAGATTAAACCATGAGTCAAAGATAAAAAATGACTAGGACTGAACCGTAAGTCAGAAA
AATAATGAAATGACTGAGATTAAACCACAAGCCAAAGATTAAAGATGACTGAGACTGAACCGCAA
GTCAGAGAAATAATGAAATGATCAA
Found at i:7046328 original size:16 final size:16
Alignment explanation
Indices: 7046307--7046339 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7046297 TCTTAATCAC
7046307 TTCTTTTCTCATTTTT
1 TTCTTTTCTCATTTTT
*
7046323 TTCTTTTTTCATTTTT
1 TTCTTTTCTCATTTTT
7046339 T
1 T
7046340 CCATTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.06, C:0.15, G:0.00, T:0.79
Consensus pattern (16 bp):
TTCTTTTCTCATTTTT
Found at i:7046339 original size:10 final size:10
Alignment explanation
Indices: 7046326--7046409 Score: 77
Period size: 10 Copynumber: 8.6 Consensus size: 10
7046316 CATTTTTTTC
7046326 TTTTTTCA-T
1 TTTTTTCATT
*
7046335 TTTTTCCATT
1 TTTTTTCATT
7046345 TTTTTTCA-T
1 TTTTTTCATT
7046354 TTTTTTCATT
1 TTTTTTCATT
**
7046364 TTTTTTGTTT
1 TTTTTTCATT
*
7046374 TTATTTTTATT
1 TT-TTTTCATT
7046385 TTTTTAT-ATT
1 TTTTT-TCATT
*
7046395 TTTTCTC-TT
1 TTTTTTCATT
7046404 TTTTTT
1 TTTTTT
7046410 TAAGCAAAAT
Statistics
Matches: 62, Mismatches: 8, Indels: 10
0.77 0.10 0.12
Matches are distributed among these distances:
9 24 0.39
10 29 0.47
11 9 0.15
ACGTcount: A:0.10, C:0.08, G:0.01, T:0.81
Consensus pattern (10 bp):
TTTTTTCATT
Found at i:7046350 original size:19 final size:19
Alignment explanation
Indices: 7046326--7046369 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
7046316 CATTTTTTTC
7046326 TTTTTTCATTTTTTCCATT
1 TTTTTTCATTTTTTCCATT
*
7046345 TTTTTTCATTTTTTTCATT
1 TTTTTTCATTTTTTCCATT
7046364 TTTTTT
1 TTTTTT
7046370 GTTTTTATTT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.09, C:0.11, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTTCATTTTTTCCATT
Found at i:7046374 original size:16 final size:14
Alignment explanation
Indices: 7046353--7046398 Score: 56
Period size: 15 Copynumber: 3.1 Consensus size: 14
7046343 TTTTTTTTCA
*
7046353 TTTTTTTCATTTTT
1 TTTTTTTTATTTTT
7046367 TTTGTTTTTATTTTT
1 TTT-TTTTTATTTTT
7046382 ATTTTTTTATATTTTT
1 -TTTTTTT-TATTTTT
7046398 T
1 T
7046399 CTCTTTTTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
14 3 0.11
15 15 0.54
16 10 0.36
ACGTcount: A:0.11, C:0.02, G:0.02, T:0.85
Consensus pattern (14 bp):
TTTTTTTTATTTTT
Found at i:7053775 original size:13 final size:13
Alignment explanation
Indices: 7053757--7053781 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7053747 TATTGTTAGT
7053757 ATGAAATGAATGC
1 ATGAAATGAATGC
7053770 ATGAAATGAATG
1 ATGAAATGAATG
7053782 AAATGCAAAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.04, G:0.24, T:0.24
Consensus pattern (13 bp):
ATGAAATGAATGC
Found at i:7057825 original size:14 final size:15
Alignment explanation
Indices: 7057790--7057870 Score: 55
Period size: 15 Copynumber: 5.5 Consensus size: 15
7057780 AAGGTTTCAA
7057790 GATTTTGAA-GGTTTG
1 GATTTT-AAGGGTTTG
7057805 GATTTTAAGGGTTTG
1 GATTTTAAGGGTTTG
*
7057820 GA-TTTAA-GTTTTGAG
1 GATTTTAAGGGTTT--G
*
7057835 GGTTTT-AGGGTTTG
1 GATTTTAAGGGTTTG
**
7057849 G-TTTTAAGATTTTG
1 GATTTTAAGGGTTTG
7057863 GAGTTTTA
1 GA-TTTTA
7057871 GAAACCTAGA
Statistics
Matches: 53, Mismatches: 5, Indels: 15
0.73 0.07 0.21
Matches are distributed among these distances:
13 8 0.15
14 16 0.30
15 17 0.32
16 12 0.23
ACGTcount: A:0.20, C:0.00, G:0.31, T:0.49
Consensus pattern (15 bp):
GATTTTAAGGGTTTG
Found at i:7057854 original size:29 final size:29
Alignment explanation
Indices: 7057801--7057871 Score: 92
Period size: 29 Copynumber: 2.4 Consensus size: 29
7057791 ATTTTGAAGG
7057801 TTTGGA-TTTTAAGGGTTTGGATTTAAG-T
1 TTTGGAGTTTT-AGGGTTTGGATTTAAGAT
* *
7057829 TTTGAGGGTTTTAGGGTTTGGTTTTAAGAT
1 TTTG-GAGTTTTAGGGTTTGGATTTAAGAT
7057859 TTTGGAGTTTTAG
1 TTTGGAGTTTTAG
7057872 AAACCTAGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
28 4 0.11
29 24 0.65
30 9 0.24
ACGTcount: A:0.18, C:0.00, G:0.31, T:0.51
Consensus pattern (29 bp):
TTTGGAGTTTTAGGGTTTGGATTTAAGAT
Found at i:7059331 original size:23 final size:22
Alignment explanation
Indices: 7059305--7059366 Score: 61
Period size: 23 Copynumber: 2.7 Consensus size: 22
7059295 TCATCTTTGA
*
7059305 TTTTTCTATTTTTTGTTCTTTTT
1 TTTTTATATTTTTT-TTCTTTTT
** *
7059328 TTTTGGTATTTTTTTTGTTTTT
1 TTTTTATATTTTTTTTCTTTTT
*
7059350 TATTTTATATTATTTTT
1 T-TTTTATATTTTTTTT
7059367 ATATTTCGTA
Statistics
Matches: 32, Mismatches: 6, Indels: 2
0.80 0.15 0.05
Matches are distributed among these distances:
22 8 0.25
23 24 0.75
ACGTcount: A:0.10, C:0.03, G:0.06, T:0.81
Consensus pattern (22 bp):
TTTTTATATTTTTTTTCTTTTT
Found at i:7059380 original size:20 final size:21
Alignment explanation
Indices: 7059355--7059405 Score: 63
Period size: 20 Copynumber: 2.6 Consensus size: 21
7059345 TTTTTTATTT
*
7059355 TATATTATTTTTA-TATTTCG
1 TATATTATTATTATTATTTCG
*
7059375 TATATTATTATTATTATTT-T
1 TATATTATTATTATTATTTCG
7059395 TAT-TTATTATT
1 TATATTATTATT
7059406 TGGGGACGAA
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
19 8 0.29
20 15 0.54
21 5 0.18
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (21 bp):
TATATTATTATTATTATTTCG
Found at i:7060627 original size:9 final size:10
Alignment explanation
Indices: 7060613--7060645 Score: 50
Period size: 10 Copynumber: 3.4 Consensus size: 10
7060603 ATGCTTAAAG
7060613 AAAAAAT-AA
1 AAAAAATGAA
*
7060622 AAAAAATGGA
1 AAAAAATGAA
7060632 AAAAAATGAA
1 AAAAAATGAA
7060642 AAAA
1 AAAA
7060646 GAAAAAAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
9 7 0.33
10 14 0.67
ACGTcount: A:0.82, C:0.00, G:0.09, T:0.09
Consensus pattern (10 bp):
AAAAAATGAA
Found at i:7060634 original size:10 final size:9
Alignment explanation
Indices: 7060613--7060653 Score: 50
Period size: 8 Copynumber: 4.7 Consensus size: 9
7060603 ATGCTTAAAG
*
7060613 AAAAAATAA
1 AAAAAATGA
7060622 AAAAAATGGA
1 AAAAAAT-GA
7060632 AAAAAATG-
1 AAAAAATGA
7060640 AAAAAA-GA
1 AAAAAATGA
7060648 AAAAAA
1 AAAAAA
7060654 GAGTGAATGA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
7 1 0.03
8 12 0.41
9 8 0.28
10 8 0.28
ACGTcount: A:0.83, C:0.00, G:0.10, T:0.07
Consensus pattern (9 bp):
AAAAAATGA
Found at i:7061840 original size:43 final size:42
Alignment explanation
Indices: 7061659--7061965 Score: 238
Period size: 42 Copynumber: 7.5 Consensus size: 42
7061649 GCATTTTACT
* * *
7061659 TTTTCAAAAGTTGTTGAGCCTCTAATTAGAGGAGC--CATTTA
1 TTTTC-AAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTA
* * *
7061700 CTTTTCAAAAGTTC-TTAAGCCTCTGATTAAAGGAGC--CATTTA
1 -TTTTC-AAAG-TCGTTGAGCCTCTGATTAGAGGAGCTTTATTTA
* *
7061742 CTTTTCCAAAGTCATTGAGCCTCTGATTAGAGGAGC--CATTTA
1 -TTTT-CAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTA
*
7061784 TTTTTCAAAGTCGTTGAGCCTCTGATTAGAGAAGCTTTATTTA
1 -TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTA
7061827 TTTGTC-AA-------AG--TC-G-TTAGAGGAGCTTTATTTA
1 TTT-TCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTA
* * *
7061858 TTTGTCAAAGTCGTTGAGCCTTTGATTATAGAAGCTTTATTTA
1 TTT-TCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTA
* * *
7061901 TTTTTCAAAGTCGTTGAGCTTCTGATTAGATGAGCTTTATTCA
1 -TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTA
* *
7061944 TCTTCAAAGTCATTGAGCCTCT
1 TTTTCAAAGTCGTTGAGCCTCT
7061966 ACTTAGAAGA
Statistics
Matches: 223, Mismatches: 23, Indels: 38
0.79 0.08 0.13
Matches are distributed among these distances:
31 23 0.10
32 3 0.01
33 2 0.01
35 2 0.01
39 2 0.01
41 31 0.14
42 99 0.44
43 58 0.26
44 3 0.01
ACGTcount: A:0.26, C:0.16, G:0.18, T:0.39
Consensus pattern (42 bp):
TTTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTTATTTA
Found at i:7061851 original size:31 final size:31
Alignment explanation
Indices: 7061809--7061872 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
7061799 GAGCCTCTGA
7061809 TTAGAGAAGCTTTATTTATTTGTCAAAGTCG
1 TTAGAGAAGCTTTATTTATTTGTCAAAGTCG
*
7061840 TTAGAGGAGCTTTATTTATTTGTCAAAGTCG
1 TTAGAGAAGCTTTATTTATTTGTCAAAGTCG
7061871 TT
1 TT
7061873 GAGCCTTTGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.27, C:0.09, G:0.20, T:0.44
Consensus pattern (31 bp):
TTAGAGAAGCTTTATTTATTTGTCAAAGTCG
Found at i:7061972 original size:42 final size:41
Alignment explanation
Indices: 7061840--7061965 Score: 153
Period size: 43 Copynumber: 3.0 Consensus size: 41
7061830 GTCAAAGTCG
*
7061840 TTAGAGGAGCTTTATTTATTTGTCAAAGTCGTTGAGCCTTTGA
1 TTAGA-GAGCTTTATTTATTT-TCAAAGTCGTTGAGCCTCTGA
* *
7061883 TTATAGAAGCTTTATTTATTTTTCAAAGTCGTTGAGCTTCTGA
1 TTAGAG-AGCTTTATTTA-TTTTCAAAGTCGTTGAGCCTCTGA
* * *
7061926 TTAGATGAGCTTTATTCATCTTCAAAGTCATTGAGCCTCT
1 TTAGA-GAGCTTTATTTATTTTCAAAGTCGTTGAGCCTCT
7061966 ACTTAGAAGA
Statistics
Matches: 72, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
42 20 0.28
43 48 0.67
44 4 0.06
ACGTcount: A:0.25, C:0.14, G:0.18, T:0.43
Consensus pattern (41 bp):
TTAGAGAGCTTTATTTATTTTCAAAGTCGTTGAGCCTCTGA
Found at i:7062195 original size:26 final size:24
Alignment explanation
Indices: 7062159--7062329 Score: 82
Period size: 24 Copynumber: 6.9 Consensus size: 24
7062149 AGGTCCACCT
*
7062159 TATTTTTTTATTTATTTTGTATTTTA
1 TATTTTATTATTTA-TTT-TATTTTA
7062185 TATTTTATTATTTATTTTATTTTA
1 TATTTTATTATTTATTTTATTTTA
* * * *
7062209 TATTATATACATTTCTTTATATCTTA
1 TATTTTAT-TATTTATTT-TATTTTA
* * *
7062235 TGTATCTGTTATTTA-TTTATTATTA
1 TAT-TTTATTATTTATTTTATT-TTA
* *
7062260 CTA-TTTATT-TTT-TTTAATTTTT
1 -TATTTTATTATTTATTTTATTTTA
* * *
7062282 TATGTTAATATATATTTTA-TTTA
1 TATTTTATTATTTATTTTATTTTA
* *
7062305 TCTAGTTATATATTTATTATTATTT
1 TAT-TTTAT-TATTTATT-TTATTT
7062330 ATCTATTGTA
Statistics
Matches: 108, Mismatches: 24, Indels: 25
0.69 0.15 0.16
Matches are distributed among these distances:
21 2 0.02
22 6 0.06
23 15 0.14
24 29 0.27
25 22 0.20
26 29 0.27
27 5 0.05
ACGTcount: A:0.26, C:0.04, G:0.03, T:0.68
Consensus pattern (24 bp):
TATTTTATTATTTATTTTATTTTA
Found at i:7062203 original size:12 final size:12
Alignment explanation
Indices: 7062158--7062205 Score: 53
Period size: 12 Copynumber: 3.8 Consensus size: 12
7062148 TAGGTCCACC
*
7062158 TTATTTTTTTAT
1 TTATTTTATTAT
7062170 TTATTTTGTATT-T
1 TTA-TTT-TATTAT
7062183 TATATTTTATTAT
1 T-TATTTTATTAT
7062196 TTATTTTATT
1 TTATTTTATT
7062206 TTATATTATA
Statistics
Matches: 31, Mismatches: 1, Indels: 8
0.77 0.03 0.20
Matches are distributed among these distances:
12 16 0.52
13 10 0.32
14 5 0.16
ACGTcount: A:0.21, C:0.00, G:0.02, T:0.77
Consensus pattern (12 bp):
TTATTTTATTAT
Found at i:7062212 original size:12 final size:12
Alignment explanation
Indices: 7062164--7062212 Score: 59
Period size: 12 Copynumber: 4.2 Consensus size: 12
7062154 CACCTTATTT
7062164 TTTTA-TTTAT-
1 TTTTATTTTATA
7062174 TTTGTATTTTATA
1 TTT-TATTTTATA
7062187 TTTTATTATT-TA
1 TTTTATT-TTATA
7062199 TTTTATTTTATA
1 TTTTATTTTATA
7062211 TT
1 TT
7062213 ATATACATTT
Statistics
Matches: 34, Mismatches: 0, Indels: 8
0.81 0.00 0.19
Matches are distributed among these distances:
10 3 0.09
11 4 0.12
12 22 0.65
13 5 0.15
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (12 bp):
TTTTATTTTATA
Found at i:7062212 original size:19 final size:19
Alignment explanation
Indices: 7062158--7062214 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 19
7062148 TAGGTCCACC
7062158 TTATTT-TTTTA-TTTAT-
1 TTATTTATTTTATTTTATA
*
7062174 TT-TGTATTTTATATTT-TA
1 TTATTTATTTTAT-TTTATA
7062192 TTATTTATTTTATTTTATA
1 TTATTTATTTTATTTTATA
7062211 TTAT
1 TTAT
7062215 ATACATTTCT
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
15 2 0.06
16 7 0.21
17 1 0.03
18 8 0.24
19 15 0.45
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (19 bp):
TTATTTATTTTATTTTATA
Found at i:7062334 original size:26 final size:24
Alignment explanation
Indices: 7062285--7062334 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 24
7062275 AATTTTTTAT
7062285 GTTAATATATATTTTATTTATCTA
1 GTTAATATATATTTTATTTATCTA
*
7062309 GTTATATATTTATTATTATTTATCTA
1 GTTA-ATATATATT-TTATTTATCTA
7062335 TTGTAATTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 4 0.17
25 8 0.35
26 11 0.48
ACGTcount: A:0.32, C:0.04, G:0.04, T:0.60
Consensus pattern (24 bp):
GTTAATATATATTTTATTTATCTA
Found at i:7062336 original size:14 final size:14
Alignment explanation
Indices: 7062294--7062373 Score: 60
Period size: 14 Copynumber: 5.8 Consensus size: 14
7062284 TGTTAATATA
7062294 TATT-TTATTTATC
1 TATTATTATTTATC
*
7062307 TAGTTA-TA--TATT
1 TA-TTATTATTTATC
7062319 TATTATTATTTATC
1 TATTATTATTTATC
* *
7062333 TATTGTAATTTATC
1 TATTATTATTTATC
*
7062347 TAGTATTATTTTTATC
1 TATTATTA--TTTATC
*
7062363 TATTAATATTT
1 TATTATTATTT
7062374 TTATTTATCT
Statistics
Matches: 51, Mismatches: 9, Indels: 13
0.70 0.12 0.18
Matches are distributed among these distances:
11 3 0.06
12 7 0.14
13 2 0.04
14 27 0.53
16 12 0.24
ACGTcount: A:0.29, C:0.05, G:0.04, T:0.62
Consensus pattern (14 bp):
TATTATTATTTATC
Found at i:7062362 original size:16 final size:16
Alignment explanation
Indices: 7062341--7062377 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
7062331 TCTATTGTAA
*
7062341 TTTATCTAGTATTATT
1 TTTATCTAGTAATATT
*
7062357 TTTATCTATTAATATT
1 TTTATCTAGTAATATT
7062373 TTTAT
1 TTTAT
7062378 TTATCTGATT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.27, C:0.05, G:0.03, T:0.65
Consensus pattern (16 bp):
TTTATCTAGTAATATT
Found at i:7063286 original size:10 final size:10
Alignment explanation
Indices: 7063273--7063297 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
7063263 TTTTATTTTT
7063273 TATATATTTA
1 TATATATTTA
7063283 TATATATTTA
1 TATATATTTA
7063293 TATAT
1 TATAT
7063298 TTATTTATTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (10 bp):
TATATATTTA
Found at i:7063302 original size:4 final size:4
Alignment explanation
Indices: 7063256--7063310 Score: 58
Period size: 4 Copynumber: 13.5 Consensus size: 4
7063246 CAGGTTTTTT
* * *
7063256 TTTA TTTT TTTA TTT- TTTA TATA TTTA TATATA TTTA TATA TTTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-T-TA TTTA TTTA TTTA TTTA
7063305 TTTA TT
1 TTTA TT
7063311 ATTATTATTA
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
3 3 0.07
4 34 0.81
5 2 0.05
6 3 0.07
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TTTA
Found at i:7063359 original size:6 final size:6
Alignment explanation
Indices: 7063348--7063413 Score: 62
Period size: 6 Copynumber: 10.5 Consensus size: 6
7063338 TTTGATATTC
* * *
7063348 TTTTAT TTTTAT TTTACTTT TCTTTAT TTTTAT TTTCAT TTTTAT TTTTTT
1 TTTTAT TTTTAT TTT--TAT T-TTTAT TTTTAT TTTTAT TTTTAT TTTTAT
7063399 TTATTA- TTTTAT TTT
1 TT-TTAT TTTTAT TTT
7063414 CTTTAAATAA
Statistics
Matches: 49, Mismatches: 6, Indels: 10
0.75 0.09 0.15
Matches are distributed among these distances:
5 3 0.06
6 36 0.73
7 5 0.10
8 3 0.06
9 2 0.04
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (6 bp):
TTTTAT
Found at i:7063375 original size:21 final size:22
Alignment explanation
Indices: 7063349--7063403 Score: 76
Period size: 22 Copynumber: 2.5 Consensus size: 22
7063339 TTGATATTCT
*
7063349 TTTATTTTTATTTT-ACTTTTC
1 TTTATTTTTATTTTCACTTTTA
*
7063370 TTTATTTTTATTTTCATTTTTA
1 TTTATTTTTATTTTCACTTTTA
*
7063392 TTTTTTTTTATT
1 TTTATTTTTATT
7063404 ATTTTATTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 14 0.47
22 16 0.53
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (22 bp):
TTTATTTTTATTTTCACTTTTA
Found at i:7063378 original size:10 final size:10
Alignment explanation
Indices: 7063348--7063413 Score: 53
Period size: 11 Copynumber: 6.3 Consensus size: 10
7063338 TTTGATATTC
7063348 TTTTATTTTT
1 TTTTATTTTT
*
7063358 ATTTTACTTTT
1 -TTTTATTTTT
*
7063369 CTTTATTTTT
1 TTTTATTTTT
7063379 ATTTTCATTTTT
1 -TTTT-ATTTTT
*
7063391 ATTT-TTTTT
1 TTTTATTTTT
*
7063400 TATTATTTTAT
1 TTTTATTTT-T
7063411 TTT
1 TTT
7063414 CTTTAAATAA
Statistics
Matches: 43, Mismatches: 8, Indels: 8
0.73 0.14 0.14
Matches are distributed among these distances:
9 7 0.16
10 12 0.28
11 18 0.42
12 6 0.14
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTATTTTT
Found at i:7063473 original size:58 final size:58
Alignment explanation
Indices: 7063410--7063763 Score: 232
Period size: 58 Copynumber: 6.1 Consensus size: 58
7063400 TATTATTTTA
* * *
7063410 TTTTCTTTAAATAAAATCCAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAATAAATTCCAAAAAAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAAT
* * *
7063468 TTTTCTTAAAAATAAATTTTC--AAAAAAAGGTTTTTGAGGAAAAA-TTGAAAGTATTAAT
1 TTTTCTT-AAAATAAA-TTCCAAAAAAAAAGATTTTTGA-GAAAAAGTTGAAAGTATCAAT
* * *
7063526 TTTCCTTAAGAATAAATTTTCAAAAAAAAAGA-TTTTGA-AGAAAAGTTAAAAGTATCAA-
1 TTTTCTTAA-AATAAA-TTCCAAAAAAAAAGATTTTTGAGA-AAAAGTTGAAAGTATCAAT
* * * * * *
7063584 TTTTCTTTGAAAACAAGCTTTC--TAAAAAATATTTTT-AGGAAAAAGTTAAAAGTATCAAT
1 TTTTC-TT-AAAATAA-ATTCCAAAAAAAAAGATTTTTGA-GAAAAAGTTGAAAGTATCAAT
* * *
7063643 TTTTCTTAAAAAATAAATTCTTAAAAAAAAAAAGA-TTTTGAGGAAAAGTTGAAACTATCAAT
1 TTTTCTT--AAAATAAATTC---CAAAAAAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAAT
* * * * * * *
7063705 TTTCCTCAAAATTAGAGTTTC---AAAAAATATTTTAG-GGAAAAGTTGAAAGTATCAAT
1 TTTTCTTAAAA-TA-AATTCCAAAAAAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAAT
7063761 TTT
1 TTT
7063764 CCCTGCATAA
Statistics
Matches: 238, Mismatches: 33, Indels: 52
0.74 0.10 0.16
Matches are distributed among these distances:
56 30 0.13
57 15 0.06
58 85 0.36
59 52 0.22
60 16 0.07
61 2 0.01
62 30 0.13
63 8 0.03
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.35
Consensus pattern (58 bp):
TTTTCTTAAAATAAATTCCAAAAAAAAAGATTTTTGAGAAAAAGTTGAAAGTATCAAT
Found at i:7063562 original size:117 final size:118
Alignment explanation
Indices: 7063428--7063765 Score: 366
Period size: 117 Copynumber: 2.8 Consensus size: 118
7063418 AAATAAAATC
* *
7063428 CAAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAATTTTCAAAA
1 CAAAAAAAAAGA-TTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAACTTTCAAAA
* *
7063493 AAAGGTTTTTGAGGAAAAATTGAAAGTATTAATTTTCCTT-AAGAATAAATT-TT-
65 AAA--TTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTTAAAAAATAAATTCTTA
* * * *
7063546 CAAAAAAAAAGATTTTGA-AGAAAAGTTAAAAGTATCAA-TTTTCTTTGAAAACAAGCTTTCTAA
1 CAAAAAAAAAGATTTTGAGA-AAAAGTTGAAAGTATCAATTTTTC-TTAAAAATAAACTTTC-AA
* *
7063609 AAAATATTTTT-AGGAAAAAGTTAAAAGTATCAATTTTTCTTAAAAAATAAATTCTTA
63 AAAA-ATTTTTGAGGAAAAA-TTGAAAGTATCAATTTTCCTTAAAAAATAAATTCTTA
* * * * * * * *
7063666 AAAAAAAAAAGATTTTGAGGAAAAGTTGAAACTATCAATTTTCCTCAAAATTAGAGTTTCAAAAA
1 CAAAAAAAAAGATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAACTTTCAAAAA
* *
7063731 ATATTTTAG-GGAAAAGTTGAAAGTATCAATTTTCC
66 A-ATTTTTGAGGAAAAATTGAAAGTATCAATTTTCC
7063766 CTGCATAAAA
Statistics
Matches: 183, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
116 14 0.08
117 58 0.32
118 44 0.24
119 21 0.11
120 42 0.23
121 4 0.02
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (118 bp):
CAAAAAAAAAGATTTTGAGAAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAACTTTCAAAAA
AATTTTTGAGGAAAAATTGAAAGTATCAATTTTCCTTAAAAAATAAATTCTTA
Found at i:7064288 original size:21 final size:23
Alignment explanation
Indices: 7064264--7064316 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
7064254 TTTTGTTAGT
7064264 GATTCATATTT-AAAA-TTTAAA
1 GATTCATATTTAAAAAGTTTAAA
* *
7064285 GATTCACATTTAAAAAGTTTAAG
1 GATTCATATTTAAAAAGTTTAAA
7064308 GATTCATAT
1 GATTCATAT
7064317 AAAAAACTTT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 10 0.37
22 4 0.15
23 13 0.48
ACGTcount: A:0.43, C:0.08, G:0.09, T:0.40
Consensus pattern (23 bp):
GATTCATATTTAAAAAGTTTAAA
Found at i:7064311 original size:23 final size:22
Alignment explanation
Indices: 7064264--7064330 Score: 75
Period size: 22 Copynumber: 3.0 Consensus size: 22
7064254 TTTTGTTAGT
*
7064264 GATTCATATTT-AAAATTTAAA
1 GATTCATATTTAAAAATTTAAG
*
7064285 GATTCACATTTAAAAAGTTTAAG
1 GATTCATATTTAAAAA-TTTAAG
*
7064308 GATTCATA-TAAAAAACTTTAAG
1 GATTCATATTTAAAAA-TTTAAG
7064330 G
1 G
7064331 CTTACATCTA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
21 10 0.26
22 17 0.44
23 12 0.31
ACGTcount: A:0.46, C:0.07, G:0.10, T:0.36
Consensus pattern (22 bp):
GATTCATATTTAAAAATTTAAG
Found at i:7064319 original size:21 final size:20
Alignment explanation
Indices: 7064264--7064321 Score: 53
Period size: 21 Copynumber: 2.7 Consensus size: 20
7064254 TTTTGTTAGT
* *
7064264 GATTCATATTTAAAATTTAAA
1 GATTCATA-TAAAAATTTAAG
*
7064285 GATTCACATTTAAAAAGTTTAAG
1 GATT--CATATAAAAA-TTTAAG
7064308 GATTCATATAAAAA
1 GATTCATATAAAAA
7064322 ACTTTAAGGC
Statistics
Matches: 30, Mismatches: 4, Indels: 6
0.75 0.10 0.15
Matches are distributed among these distances:
21 13 0.43
22 5 0.17
23 12 0.40
ACGTcount: A:0.48, C:0.07, G:0.09, T:0.36
Consensus pattern (20 bp):
GATTCATATAAAAATTTAAG
Found at i:7064422 original size:45 final size:45
Alignment explanation
Indices: 7064342--7064467 Score: 130
Period size: 45 Copynumber: 2.8 Consensus size: 45
7064332 TTACATCTAC
** * *
7064342 AATTCAAATATTCACATTAAAAAATTTCATGAGATTCACATCCAA-
1 AATTCAAATATTTTCATTCAAAAATTTCA-AAGATTCACATCCAAG
* * *
7064387 AATTCAAATATTTTCATTCGAAAAATTTTAAAGATTCATATCTAAG
1 AATTCAAATATTTTCATTC-AAAAATTTCAAAGATTCACATCCAAG
* * *
7064433 ATTTTAAAAATTTTCATTC-AAAATTTCAAAGATTC
1 AATTCAAATATTTTCATTCAAAAATTTCAAAGATTC
7064468 TCATTTGAAA
Statistics
Matches: 68, Mismatches: 11, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
44 15 0.22
45 28 0.41
46 25 0.37
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.37
Consensus pattern (45 bp):
AATTCAAATATTTTCATTCAAAAATTTCAAAGATTCACATCCAAG
Found at i:7064471 original size:22 final size:22
Alignment explanation
Indices: 7064344--7064472 Score: 66
Period size: 22 Copynumber: 5.7 Consensus size: 22
7064334 ACATCTACAA
* * *
7064344 TTCAAATATTCACATTAAAAAAT
1 TTCAAAGATTCTCATT-CAAAAT
* * *
7064367 TTCATGAGATTCACATCCAAAA-
1 TTCA-AAGATTCTCATTCAAAAT
* *
7064389 TTCAAATATTTTCATTCGAAAAAT
1 TTCAAAGATTCTCATTC--AAAAT
* *
7064413 TTTAAAGA-T-TCATATCTAAGAT
1 TTCAAAGATTCTCAT-TC-AAAAT
* * *
7064435 TTTAAAAATTTTCATTCAAAAT
1 TTCAAAGATTCTCATTCAAAAT
7064457 TTCAAAGATTCTCATT
1 TTCAAAGATTCTCATT
7064473 TGAAATTTTA
Statistics
Matches: 81, Mismatches: 18, Indels: 15
0.71 0.16 0.13
Matches are distributed among these distances:
21 8 0.10
22 36 0.44
23 18 0.22
24 19 0.23
ACGTcount: A:0.43, C:0.14, G:0.05, T:0.39
Consensus pattern (22 bp):
TTCAAAGATTCTCATTCAAAAT
Found at i:7064481 original size:44 final size:43
Alignment explanation
Indices: 7064433--7064560 Score: 143
Period size: 44 Copynumber: 2.9 Consensus size: 43
7064423 CATATCTAAG
* * *
7064433 ATTTTAAAAATTTTCATTCAAAATTTCAAAGATTCTCATTTGAA
1 ATTTTAGAGATTTTCATCCAAAA-TTCAAAGATTCTCATTTGAA
* * *
7064477 ATTTTAGAGATTTACATCCAAAATTCAAATATT-TGCAATTGAA
1 ATTTTAGAGATTTTCATCCAAAATTCAAAGATTCT-CATTTGAA
*
7064520 ATTCTTAGAGATTTAT-ATCCAAAATTCAAATATTCTCATTT
1 ATT-TTAGAGATTT-TCATCCAAAATTCAAAGATTCTCATTT
7064561 AAAACTCAAA
Statistics
Matches: 72, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
42 1 0.01
43 19 0.26
44 51 0.71
45 1 0.01
ACGTcount: A:0.40, C:0.12, G:0.06, T:0.41
Consensus pattern (43 bp):
ATTTTAGAGATTTTCATCCAAAATTCAAAGATTCTCATTTGAA
Found at i:7065317 original size:25 final size:25
Alignment explanation
Indices: 7065236--7065318 Score: 87
Period size: 25 Copynumber: 3.4 Consensus size: 25
7065226 CAAAGATTCA
* *
7065236 AATATTCACAAAATAATACAAATGC
1 AATATTCAAAAAATAATGCAAATGC
* *
7065261 AATACT-AAAAAATAATGTAAATGC
1 AATATTCAAAAAATAATGCAAATGC
* * * *
7065285 ATTGTTCAAAAAATAATGCATATAC
1 AATATTCAAAAAATAATGCAAATGC
7065310 AATATTCAA
1 AATATTCAA
7065319 TACATAGATT
Statistics
Matches: 45, Mismatches: 12, Indels: 2
0.76 0.20 0.03
Matches are distributed among these distances:
24 18 0.40
25 27 0.60
ACGTcount: A:0.54, C:0.12, G:0.06, T:0.28
Consensus pattern (25 bp):
AATATTCAAAAAATAATGCAAATGC
Found at i:7066991 original size:21 final size:20
Alignment explanation
Indices: 7066963--7067001 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
7066953 CATGCAATCT
*
7066963 TCATTCAATGACAATAAATG
1 TCATTCAATCACAATAAATG
7066983 TCATGTCAATCACAATAAA
1 TCAT-TCAATCACAATAAA
7067002 AAATATTGTG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 4 0.24
21 13 0.76
ACGTcount: A:0.46, C:0.18, G:0.08, T:0.28
Consensus pattern (20 bp):
TCATTCAATCACAATAAATG
Found at i:7067110 original size:13 final size:13
Alignment explanation
Indices: 7067092--7067122 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
7067082 GGTTAAAATG
7067092 TTGATAAAGGATA
1 TTGATAAAGGATA
7067105 TTGATAAAGGATA
1 TTGATAAAGGATA
7067118 TTGAT
1 TTGAT
7067123 GTGTTTGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (13 bp):
TTGATAAAGGATA
Found at i:7069128 original size:196 final size:195
Alignment explanation
Indices: 7068795--7069164 Score: 704
Period size: 196 Copynumber: 1.9 Consensus size: 195
7068785 CATAATTCAG
7068795 TGTGTATAAAGAGACCTTTAAATGTTAAAAAAAAAACTAAATGTAAAAAAAAGTAAAACCATTAA
1 TGTGTATAAAGAGACCTTTAAATGTTAAAAAAAAAACTAAATGTAAAAAAAAGTAAAACCATTAA
7068860 ATTTGTAAAGGCTTGGATAATACAATTAATTATTGACTCAACTTAAGAAATCTCCAGTGGAGTCA
66 ATTTGTAAAGGCTTGGATAATACAATTAATTATTGACTCAACTTAAGAAATCTCCAGTGGAGTCA
7068925 CTAAACTGTCATAACGTATAGATCCATGAACCTAATACTAGACATAACTTAAATGTTAAATCCAA
131 CTAAACTGTCATAACGTATAGATCCATGAACCTAATACTAGACATAACTTAAATGTTAAATCCAA
7068990 TGTGTATAAAGAGACCTTTAAATGTTAAAAAAAAAAACTAAATGTAAAAAAAAGTAAAACCATTA
1 TGTGTATAAAGAGACCTTTAAATGTT-AAAAAAAAAACTAAATGTAAAAAAAAGTAAAACCATTA
* *
7069055 AATTTGTTAAGGCTTGGATAATACAATTAATTATTGACTCGACTTAAGAAATCTCCAGTGGAGTC
65 AATTTGTAAAGGCTTGGATAATACAATTAATTATTGACTCAACTTAAGAAATCTCCAGTGGAGTC
*
7069120 ACTAAACTGTCATAACGTATAGATCTATGAACCTAATACTAGACA
130 ACTAAACTGTCATAACGTATAGATCCATGAACCTAATACTAGACA
7069165 CAATTTAGGA
Statistics
Matches: 171, Mismatches: 3, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
195 26 0.15
196 145 0.85
ACGTcount: A:0.45, C:0.14, G:0.13, T:0.28
Consensus pattern (195 bp):
TGTGTATAAAGAGACCTTTAAATGTTAAAAAAAAAACTAAATGTAAAAAAAAGTAAAACCATTAA
ATTTGTAAAGGCTTGGATAATACAATTAATTATTGACTCAACTTAAGAAATCTCCAGTGGAGTCA
CTAAACTGTCATAACGTATAGATCCATGAACCTAATACTAGACATAACTTAAATGTTAAATCCAA
Found at i:7069902 original size:13 final size:14
Alignment explanation
Indices: 7069879--7069907 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
7069869 ATTTGACCTT
7069879 AAAATTAATTTTCA
1 AAAATTAATTTTCA
7069893 AAAATT-ATTTTCA
1 AAAATTAATTTTCA
7069906 AA
1 AA
7069908 TCAATTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.60
14 6 0.40
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (14 bp):
AAAATTAATTTTCA
Found at i:7070671 original size:12 final size:12
Alignment explanation
Indices: 7070654--7070704 Score: 57
Period size: 12 Copynumber: 4.1 Consensus size: 12
7070644 ATTATATAAA
*
7070654 AATTATTTTTTT
1 AATTATTTATTT
7070666 AATTATTTATTT
1 AATTATTTATTT
*
7070678 ATATATATTTATAT
1 A-AT-TATTTATTT
*
7070692 AATTATATATTT
1 AATTATTTATTT
7070704 A
1 A
7070705 TATTTAAAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
12 20 0.61
13 4 0.12
14 9 0.27
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (12 bp):
AATTATTTATTT
Found at i:7070751 original size:15 final size:15
Alignment explanation
Indices: 7070731--7070803 Score: 55
Period size: 15 Copynumber: 5.0 Consensus size: 15
7070721 TTTATTAATT
7070731 TTAAATAAAATTAAA
1 TTAAATAAAATTAAA
* *
7070746 TTAAATATAATTTAA
1 TTAAATAAAATTAAA
*
7070761 -T--ATAATATTAAA
1 TTAAATAAAATTAAA
* *
7070773 TTAGATCAAATTCAAA
1 TTAAATAAAATT-AAA
7070789 TATAAA-AAAATTAAA
1 T-TAAATAAAATTAAA
7070804 AATTTTTTAA
Statistics
Matches: 44, Mismatches: 9, Indels: 10
0.70 0.14 0.16
Matches are distributed among these distances:
12 8 0.18
13 1 0.02
14 1 0.02
15 22 0.50
16 9 0.20
17 3 0.07
ACGTcount: A:0.60, C:0.03, G:0.01, T:0.36
Consensus pattern (15 bp):
TTAAATAAAATTAAA
Found at i:7075019 original size:2 final size:2
Alignment explanation
Indices: 7075012--7075042 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
7075002 CTCTTCATGG
*
7075012 AT AT AT AT TT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7075043 ATTTTTTGTT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:7084754 original size:13 final size:13
Alignment explanation
Indices: 7084736--7084761 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7084726 AATGAGAACC
7084736 CATAAGAACCACT
1 CATAAGAACCACT
7084749 CATAAGAACCACT
1 CATAAGAACCACT
7084762 TTTGGGTTTC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.31, G:0.08, T:0.15
Consensus pattern (13 bp):
CATAAGAACCACT
Found at i:7092776 original size:25 final size:23
Alignment explanation
Indices: 7092747--7092800 Score: 63
Period size: 26 Copynumber: 2.2 Consensus size: 23
7092737 TTTTTCAATT
*
7092747 TAAAATAAAAAATAATAAGAGTAAA
1 TAAAATAAAAAA-AATAAGA-AAAA
*
7092772 TAAAAATAAATAAAATAAGAAAAA
1 T-AAAATAAAAAAAATAAGAAAAA
7092796 TAAAA
1 TAAAA
7092801 CCAAAACAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
23 4 0.15
24 4 0.15
25 8 0.31
26 10 0.38
ACGTcount: A:0.76, C:0.00, G:0.06, T:0.19
Consensus pattern (23 bp):
TAAAATAAAAAAAATAAGAAAAA
Found at i:7093742 original size:64 final size:64
Alignment explanation
Indices: 7093616--7093751 Score: 148
Period size: 64 Copynumber: 2.1 Consensus size: 64
7093606 ACAAAACAAG
* * * * ***
7093616 AAATAAAATTATCTAGACTGAGCCGAGATCAAAATAAATGACCAGGATTAAATTGTGAGTCAAA
1 AAATAAAATTATCTAAACTAAGCCAAAATCAAAATAAATGACCAGGATTAAACCATGAGTCAAA
** * *
7093680 AAATAAAATTATCTAAACTAAGCCAAAATTGAAATGAATGACCAGGATTGAACCAT-AGGTCAAA
1 AAATAAAATTATCTAAACTAAGCCAAAATCAAAATAAATGACCAGGATTAAACCATGA-GTCAAA
7093744 ACAATAAA
1 A-AATAAA
7093752 GTTTAGTATT
Statistics
Matches: 59, Mismatches: 11, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
63 1 0.02
64 52 0.88
65 6 0.10
ACGTcount: A:0.50, C:0.13, G:0.15, T:0.22
Consensus pattern (64 bp):
AAATAAAATTATCTAAACTAAGCCAAAATCAAAATAAATGACCAGGATTAAACCATGAGTCAAA
Found at i:7093978 original size:18 final size:18
Alignment explanation
Indices: 7093955--7093989 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
7093945 TTCATAGAGA
*
7093955 TTTCAGGTTCACAAGAAC
1 TTTCAGATTCACAAGAAC
*
7093973 TTTCAGATTCATAAGAA
1 TTTCAGATTCACAAGAA
7093990 GGACAATTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.17, G:0.14, T:0.31
Consensus pattern (18 bp):
TTTCAGATTCACAAGAAC
Found at i:7094031 original size:85 final size:85
Alignment explanation
Indices: 7093887--7094072 Score: 257
Period size: 85 Copynumber: 2.2 Consensus size: 85
7093877 TCGTAAAGGT
* * * *
7093887 TTTCAGATTCGCAAGAATGAAAGATTCACAAGATTTCAAGTTTCATAAAGGTTCTAGATTCATAG
1 TTTCAGATTCACAAGAAGGAAAGATTCACAAGATTTCAAGTTTCACAAAGGTTCTAGATTCATAA
* *
7093952 AGATTTCAGGTTCACAAGAAC
66 ACATTTCAAGTTCACAAG-AC
* * * *
7093973 TTTCAGATTCATAAGAAGGACA-ATTTACAAGATTTTAAGTTTCACAAAGGTTCTAGATTCATAA
1 TTTCAGATTCACAAGAAGGAAAGATTCACAAGATTTCAAGTTTCACAAAGGTTCTAGATTCATAA
7094037 ACATTTCAAGTTCACAAGAC
66 ACATTTCAAGTTCACAAGAC
*
7094057 TTTCAAATTCACAAGA
1 TTTCAGATTCACAAGA
7094073 TTTCAAGTTT
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
84 16 0.18
85 54 0.61
86 18 0.20
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.31
Consensus pattern (85 bp):
TTTCAGATTCACAAGAAGGAAAGATTCACAAGATTTCAAGTTTCACAAAGGTTCTAGATTCATAA
ACATTTCAAGTTCACAAGAC
Found at i:7094111 original size:68 final size:69
Alignment explanation
Indices: 7093994--7094128 Score: 173
Period size: 68 Copynumber: 2.0 Consensus size: 69
7093984 TAAGAAGGAC
* * *
7093994 AATTTACAAGATTTTAAGTTTCACAAAGGTTCTAGATTCATAAACATTTCAAGTTCACAA-GACT
1 AATTCACAAGATTTCAAGTTTCACAAAGGTTCTAGATTCACAAACATTTCAAGTTCACAAGGACT
7094058 TTCA
66 TTCA
** * * * * *
7094062 AATTCACAAGATTTCAAGTTTTGCAGAGGTTCTAGATTCGCAAAGATTTCAGGTTCGCAAGGACT
1 AATTCACAAGATTTCAAGTTTCACAAAGGTTCTAGATTCACAAACATTTCAAGTTCACAAGGACT
7094127 TT
66 TT
7094129 TAGATTCGCA
Statistics
Matches: 56, Mismatches: 10, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
68 50 0.89
69 6 0.11
ACGTcount: A:0.34, C:0.16, G:0.16, T:0.34
Consensus pattern (69 bp):
AATTCACAAGATTTCAAGTTTCACAAAGGTTCTAGATTCACAAACATTTCAAGTTCACAAGGACT
TTCA
Found at i:7094202 original size:86 final size:86
Alignment explanation
Indices: 7094068--7094263 Score: 272
Period size: 86 Copynumber: 2.3 Consensus size: 86
7094058 TTCAAATTCA
* * * * *
7094068 CAAGATTTCAAGTTTTGCAGAGGTTCTAGATTCGCAAAGATTTCAGGTTCGCAAGGACTTTTAGA
1 CAAGATTTCAAGTTTCGAAAAGGTTCTAGATTCACAAAAATTTCAGGTTCGCAAGGACTTTTAGA
7094133 TTCGCAAGAATGAAAGAT-TT-G
66 TTCGCAAGAAT-AAA-ATGTTCG
* * *
7094154 CAAGATTTTAAGTTTCGAAAAGGTTTTAGATTCACAAAAATTTTAGGTTCGCAAGGACTTTTAGA
1 CAAGATTTCAAGTTTCGAAAAGGTTCTAGATTCACAAAAATTTCAGGTTCGCAAGGACTTTTAGA
7094219 TTCGCAAGAATAAAATGTTCG
66 TTCGCAAGAATAAAATGTTCG
7094240 CAAGATTTCAAGTTTC-ACAAAGGT
1 CAAGATTTCAAGTTTCGA-AAAGGT
7094264 CAAAAAAATG
Statistics
Matches: 98, Mismatches: 9, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
84 2 0.02
85 6 0.06
86 90 0.92
ACGTcount: A:0.34, C:0.13, G:0.20, T:0.32
Consensus pattern (86 bp):
CAAGATTTCAAGTTTCGAAAAGGTTCTAGATTCACAAAAATTTCAGGTTCGCAAGGACTTTTAGA
TTCGCAAGAATAAAATGTTCG
Found at i:7094448 original size:55 final size:55
Alignment explanation
Indices: 7094381--7094633 Score: 192
Period size: 55 Copynumber: 4.6 Consensus size: 55
7094371 ATTGAACCGT
* * * * * *
7094381 AAGTCAAAAAAATGATGTGGACTGAGCCAAGATCCAATGATCGAGACTAAGTCAC
1 AAGTCAAGAAAATGATCTGGACTGAGCCAAGATCGAATAACCGAGACTAAGCCAC
* ** * ** * *
7094436 AAGTCAAGAAAATGATCTGGACTGAACCAAGATTAAATGATAGGGA-TGGAA-CCAT
1 AAGTCAAGAAAATGATCTGGACTGAGCCAAGATCGAATAACCGAGACT--AAGCCAC
* * * *
7094491 AAGTC-AGAAAAATGATTTGGACTGAGCCAAGAAT-GAACAACCAAGACTGAGCCAC
1 AAGTCAAG-AAAATGATCTGGACTGAGCCAAG-ATCGAATAACCGAGACTAAGCCAC
* * * * *
7094546 AAGTCAAGAAAATTATCTAGATTAAGCCAAGATCGAATAACCGAGACTAAGCCAT
1 AAGTCAAGAAAATGATCTGGACTGAGCCAAGATCGAATAACCGAGACTAAGCCAC
* * *
7094601 AAGTC-AGAAAAATGATTTGAACTAAGCCAAGAT
1 AAGTCAAG-AAAATGATCTGGACTGAGCCAAGAT
7094634 AGAAAATGAG
Statistics
Matches: 155, Mismatches: 34, Indels: 18
0.75 0.16 0.09
Matches are distributed among these distances:
54 8 0.05
55 140 0.90
56 7 0.05
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.19
Consensus pattern (55 bp):
AAGTCAAGAAAATGATCTGGACTGAGCCAAGATCGAATAACCGAGACTAAGCCAC
Found at i:7094547 original size:110 final size:111
Alignment explanation
Indices: 7094368--7094632 Score: 270
Period size: 110 Copynumber: 2.4 Consensus size: 111
7094358 ACAAGTGATT
* * * * ** * *
7094368 GAGATTGAACCGTAAGTCAAAAAAATGATGTGGACTGAGCCAAG-ATCCAATGATCGAGACTAAG
1 GAGACTGAACCATAAGTCAGAAAAATGATTTGGACTGAGCCAAGAATCCAACAACCAAGACTAAG
* * * * *
7094432 TCACAAGTCAAGAAAATGATCTGGACTGAA-CCAAGATTAAATGATA
66 CCACAAGTCAAGAAAATGATCTAGA-TGAAGCCAAGATCAAATAACA
* * *
7094478 GGGA-TGGAACCATAAGTCAGAAAAATGATTTGGACTGAGCCAAGAAT-GAACAACCAAGACTGA
1 GAGACT-GAACCATAAGTCAGAAAAATGATTTGGACTGAGCCAAGAATCCAACAACCAAGACTAA
* * * *
7094541 GCCACAAGTCAAGAAAATTATCTAGATTAAGCCAAGATCGAATAACC
65 GCCACAAGTCAAGAAAATGATCTAGATGAAGCCAAGATCAAATAACA
* *
7094588 GAGACT-AAGCCATAAGTCAGAAAAATGATTTGAACTAAGCCAAGA
1 GAGACTGAA-CCATAAGTCAGAAAAATGATTTGGACTGAGCCAAGA
7094633 TAGAAAATGA
Statistics
Matches: 128, Mismatches: 22, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
109 6 0.05
110 119 0.93
111 3 0.02
ACGTcount: A:0.44, C:0.17, G:0.21, T:0.18
Consensus pattern (111 bp):
GAGACTGAACCATAAGTCAGAAAAATGATTTGGACTGAGCCAAGAATCCAACAACCAAGACTAAG
CCACAAGTCAAGAAAATGATCTAGATGAAGCCAAGATCAAATAACA
Found at i:7105299 original size:43 final size:43
Alignment explanation
Indices: 7105247--7105346 Score: 114
Period size: 43 Copynumber: 2.3 Consensus size: 43
7105237 AATGTTTAAA
*
7105247 TTTTAAAAGTTGA-TAAG-CTTTTGTTTAAAGGAGCATTTTATAT
1 TTTTAAAAGTT-ATTAAGTC-TCTGTTTAAAGGAGCATTTTATAT
* * *
7105290 TTTTCAAAGTTATTGAGTCTCTGTTTAAAGGAGCCTTTTATAT
1 TTTTAAAAGTTATTAAGTCTCTGTTTAAAGGAGCATTTTATAT
**
7105333 TTTTTTAAGTTATT
1 TTTTAAAAGTTATT
7105347 GAACATCTGT
Statistics
Matches: 49, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
42 1 0.02
43 47 0.96
44 1 0.02
ACGTcount: A:0.28, C:0.07, G:0.15, T:0.50
Consensus pattern (43 bp):
TTTTAAAAGTTATTAAGTCTCTGTTTAAAGGAGCATTTTATAT
Found at i:7105356 original size:43 final size:43
Alignment explanation
Indices: 7105268--7105359 Score: 132
Period size: 43 Copynumber: 2.1 Consensus size: 43
7105258 GATAAGCTTT
*
7105268 TGTTTAAAGGAGCATTTTATATTTTTCAAAGTTATTGAGTCTC
1 TGTTTAAAGGAGCATTTTATATTTTTCAAAGTTATTGAGACTC
* **
7105311 TGTTTAAAGGAGCCTTTTATATTTTTTTAAGTTATTGA-ACATC
1 TGTTTAAAGGAGCATTTTATATTTTTCAAAGTTATTGAGAC-TC
7105354 TGTTTA
1 TGTTTA
7105360 GAAAAGCTTT
Statistics
Matches: 44, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
42 1 0.02
43 43 0.98
ACGTcount: A:0.27, C:0.09, G:0.15, T:0.49
Consensus pattern (43 bp):
TGTTTAAAGGAGCATTTTATATTTTTCAAAGTTATTGAGACTC
Found at i:7105372 original size:43 final size:43
Alignment explanation
Indices: 7105268--7105373 Score: 117
Period size: 43 Copynumber: 2.5 Consensus size: 43
7105258 GATAAGCTTT
* * *
7105268 TGTTTAAAGGAGCATTTTATATTTTTCAAAGTTATTGAGTCTC
1 TGTTTAAAGAAGCCTTTTATATTTTTCAAAGTTATTGAGACTC
* **
7105311 TGTTTAAAGGAGCCTTTTATATTTTTTTAAGTTATTGA-ACATC
1 TGTTTAAAGAAGCCTTTTATATTTTTCAAAGTTATTGAGAC-TC
*
7105354 TGTTTAGAA-AAGCTTTTTAT
1 TGTTTA-AAGAAGCCTTTTAT
7105374 GTTGCTCAAA
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
42 1 0.02
43 52 0.95
44 2 0.04
ACGTcount: A:0.28, C:0.08, G:0.15, T:0.48
Consensus pattern (43 bp):
TGTTTAAAGAAGCCTTTTATATTTTTCAAAGTTATTGAGACTC
Found at i:7111853 original size:145 final size:145
Alignment explanation
Indices: 7111590--7111868 Score: 549
Period size: 145 Copynumber: 1.9 Consensus size: 145
7111580 TCCTCCATCT
7111590 TATATATATATATATATCAGGAAATATGGGGAATTACTAAAGCCATGTTTATGGGCACTTTATCT
1 TATATATATATATATATCAGGAAATATGGGGAATTACTAAAGCCATGTTTATGGGCACTTTATCT
7111655 CATATGTTAACGCATATGCACCCTCCTTCTGACCAAGCTAACCCTCGATGCTATACACTATTATA
66 CATATGTTAACGCATATGCACCCTCCTTCTGACCAAGCTAACCCTCGATGCTATACACTATTATA
7111720 GTTTATATTTATATA
131 GTTTATATTTATATA
7111735 TATATATATATATATATCAGGAAATATGGGGAATTACTAAAGCCATGTTTATGGGCACTTTATCT
1 TATATATATATATATATCAGGAAATATGGGGAATTACTAAAGCCATGTTTATGGGCACTTTATCT
*
7111800 CATATGTTAACGCATATGCGCCCTCCTTCTGACCAAGCTAACCCTCGATGCTATACACTATTATA
66 CATATGTTAACGCATATGCACCCTCCTTCTGACCAAGCTAACCCTCGATGCTATACACTATTATA
7111865 GTTT
131 GTTT
7111869 GTTCATTTTG
Statistics
Matches: 133, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
145 133 1.00
ACGTcount: A:0.32, C:0.19, G:0.14, T:0.35
Consensus pattern (145 bp):
TATATATATATATATATCAGGAAATATGGGGAATTACTAAAGCCATGTTTATGGGCACTTTATCT
CATATGTTAACGCATATGCACCCTCCTTCTGACCAAGCTAACCCTCGATGCTATACACTATTATA
GTTTATATTTATATA
Found at i:7115909 original size:13 final size:13
Alignment explanation
Indices: 7115891--7115916 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
7115881 TTGTAGTGGG
7115891 AAACTAAGTTATT
1 AAACTAAGTTATT
7115904 AAACTAAGTTATT
1 AAACTAAGTTATT
7115917 TCCTATCCAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
AAACTAAGTTATT
Found at i:7119932 original size:15 final size:15
Alignment explanation
Indices: 7119908--7119942 Score: 54
Period size: 15 Copynumber: 2.3 Consensus size: 15
7119898 ATATAATATC
7119908 AAAT-ATAATGATTT
1 AAATAATAATGATTT
7119922 AAATAATAATGATTT
1 AAATAATAATGATTT
7119937 ATAATA
1 A-AATA
7119943 TTACACCGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 4 0.21
15 11 0.58
16 4 0.21
ACGTcount: A:0.54, C:0.00, G:0.06, T:0.40
Consensus pattern (15 bp):
AAATAATAATGATTT
Done.