Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 32 of 195
Found at i:7121467 original size:16 final size:17
Alignment explanation
Indices: 7121435--7121467 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
7121425 AAAATACTAA
*
7121435 CAAAATATATAAGTTTT
1 CAAAATATATAAATTTT
7121452 CAAAAT-TATAAATTTT
1 CAAAATATATAAATTTT
7121468 ATCAATTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.42
Consensus pattern (17 bp):
CAAAATATATAAATTTT
Found at i:7125734 original size:13 final size:13
Alignment explanation
Indices: 7125718--7125745 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
7125708 ATTTTTATTT
7125718 TTATATTTTAAAA
1 TTATATTTTAAAA
7125731 TTATATTTTAAAA
1 TTATATTTTAAAA
7125744 TT
1 TT
7125746 TTTTAATTTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (13 bp):
TTATATTTTAAAA
Found at i:7125746 original size:21 final size:22
Alignment explanation
Indices: 7125687--7125747 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 22
7125677 AAATTTTATC
* *
7125687 TTATTTTTTAAAACATTTAAAAT
1 TTATATTTTAAAA-TTTTAAAAT
* * *
7125710 TTTTATTTTTATATTTTAAAA-
1 TTATATTTTAAAATTTTAAAAT
7125731 TTATATTTTAAAATTTT
1 TTATATTTTAAAATTTT
7125748 TTAATTTTTT
Statistics
Matches: 30, Mismatches: 8, Indels: 2
0.75 0.20 0.05
Matches are distributed among these distances:
21 14 0.47
22 7 0.23
23 9 0.30
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.61
Consensus pattern (22 bp):
TTATATTTTAAAATTTTAAAAT
Found at i:7126611 original size:16 final size:16
Alignment explanation
Indices: 7126590--7126625 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
7126580 GATTGCACAT
* *
7126590 GAATCCTGAAGATCAA
1 GAATCCTGAAAAACAA
7126606 GAATCCTGAAAAACAA
1 GAATCCTGAAAAACAA
7126622 GAAT
1 GAAT
7126626 GGAAAGATCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.50, C:0.17, G:0.17, T:0.17
Consensus pattern (16 bp):
GAATCCTGAAAAACAA
Found at i:7129733 original size:20 final size:21
Alignment explanation
Indices: 7129708--7129748 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
7129698 TATTTTAAAA
7129708 ATGCAT-TGTTAA-ATTATTTT
1 ATGCATAT-TTAATATTATTTT
7129728 ATGCATATTTAATATTATTTT
1 ATGCATATTTAATATTATTTT
7129749 TATTCTAAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.32, C:0.05, G:0.07, T:0.56
Consensus pattern (21 bp):
ATGCATATTTAATATTATTTT
Found at i:7129814 original size:31 final size:36
Alignment explanation
Indices: 7129776--7129852 Score: 101
Period size: 31 Copynumber: 2.3 Consensus size: 36
7129766 TTAATACATA
7129776 TTATTTATTAATTT-AT-TATA-T-AATAAAATT-T
1 TTATTTATTAATTTAATATATAGTAAATAAAATTAT
* *
7129807 TTATTTATTAGTTTAATATATAGTAAATAAATTTAT
1 TTATTTATTAATTTAATATATAGTAAATAAAATTAT
7129843 TTATTTATTA
1 TTATTTATTA
7129853 TAATAAATCA
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
31 13 0.33
32 2 0.05
33 4 0.10
34 1 0.03
35 8 0.21
36 11 0.28
ACGTcount: A:0.40, C:0.00, G:0.03, T:0.57
Consensus pattern (36 bp):
TTATTTATTAATTTAATATATAGTAAATAAAATTAT
Found at i:7137758 original size:15 final size:16
Alignment explanation
Indices: 7137735--7137764 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
7137725 AGAAAAAAGC
7137735 AAAAGAAAAAAAGATG
1 AAAAGAAAAAAAGATG
7137751 AAAA-AAAAAAAGAT
1 AAAAGAAAAAAAGAT
7137765 TGGTATAAGG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.80, C:0.00, G:0.13, T:0.07
Consensus pattern (16 bp):
AAAAGAAAAAAAGATG
Found at i:7137865 original size:17 final size:17
Alignment explanation
Indices: 7137832--7137865 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
7137822 AAAAATATTG
**
7137832 AAAACAAAAATTTAAAA
1 AAAACAAAAATCGAAAA
7137849 AAAACAAAAATCGAAAA
1 AAAACAAAAATCGAAAA
7137866 GGATAATGTG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.76, C:0.09, G:0.03, T:0.12
Consensus pattern (17 bp):
AAAACAAAAATCGAAAA
Found at i:7138078 original size:15 final size:14
Alignment explanation
Indices: 7138041--7138083 Score: 50
Period size: 16 Copynumber: 2.9 Consensus size: 14
7138031 TGGAAGAAAG
7138041 AACTAAAATAAATAAA
1 AACTAAAA-AAA-AAA
7138057 AACTAAACAAAAAAA
1 AACTAAA-AAAAAAA
*
7138072 AATTAAAAAAAA
1 AACTAAAAAAAA
7138084 GAAGCTAGTA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
14 5 0.20
15 9 0.36
16 10 0.40
17 1 0.04
ACGTcount: A:0.79, C:0.07, G:0.00, T:0.14
Consensus pattern (14 bp):
AACTAAAAAAAAAA
Found at i:7138189 original size:20 final size:21
Alignment explanation
Indices: 7138164--7138203 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
7138154 TCTATAGATT
*
7138164 AATATA-TATTTTTAATTAAA
1 AATATATTAATTTTAATTAAA
7138184 AATATATTAATTTTAATTAA
1 AATATATTAATTTTAATTAA
7138204 TTTAAAATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AATATATTAATTTTAATTAAA
Found at i:7138247 original size:19 final size:20
Alignment explanation
Indices: 7138208--7138251 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
7138198 AATTAATTTA
* *
7138208 AAATAAATATTTATATTATT
1 AAATAAAAAATTATATTATT
7138228 AAATAAAAAATTAT-TTATT
1 AAATAAAAAATTATATTATT
7138247 AAATA
1 AAATA
7138252 TATTAAAAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 10 0.45
20 12 0.55
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (20 bp):
AAATAAAAAATTATATTATT
Found at i:7155205 original size:7 final size:7
Alignment explanation
Indices: 7155193--7155218 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
7155183 GATTAACCGG
7155193 ATTTTAA
1 ATTTTAA
7155200 ATTTTAA
1 ATTTTAA
7155207 ATTTTAA
1 ATTTTAA
7155214 ATTTT
1 ATTTT
7155219 TTAATATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (7 bp):
ATTTTAA
Found at i:7155232 original size:20 final size:22
Alignment explanation
Indices: 7155207--7155248 Score: 61
Period size: 23 Copynumber: 2.0 Consensus size: 22
7155197 TAAATTTTAA
7155207 ATTTTAA-AT-TTTTTAATATT
1 ATTTTAATATATTTTTAATATT
7155227 ATTTTAATATAATTTTTAATAT
1 ATTTTAATAT-ATTTTTAATAT
7155249 ATTAAAATAG
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 7 0.37
21 2 0.11
23 10 0.53
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (22 bp):
ATTTTAATATATTTTTAATATT
Found at i:7155233 original size:11 final size:11
Alignment explanation
Indices: 7155207--7155248 Score: 52
Period size: 11 Copynumber: 3.9 Consensus size: 11
7155197 TAAATTTTAA
7155207 ATTTTAA-ATT
1 ATTTTAATATT
7155217 -TTTTAATATT
1 ATTTTAATATT
*
7155227 ATTTTAATATA
1 ATTTTAATATT
7155238 ATTTTTAATAT
1 A-TTTTAATAT
7155249 ATTAAAATAG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
9 6 0.21
10 3 0.11
11 10 0.36
12 9 0.32
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (11 bp):
ATTTTAATATT
Found at i:7158126 original size:60 final size:59
Alignment explanation
Indices: 7157949--7158555 Score: 679
Period size: 60 Copynumber: 10.1 Consensus size: 59
7157939 TTCAATGATC
* * *
7157949 TCTTTAAAATAAAAATTTTAAAAAAAATATATTTTTGAAGGAAAA-TTGAATGTATCAA-TTT
1 TCTTGAAAAT-AAAATTTT-CAAAAAA-ATATTTTTG-AGGAAAAGTTGAAAGTATCAATTTT
* * * * * **
7158010 CCTTTGAACATAAAA-ATT-AAAAATATATATATTTAAGGAAAAGTTGAAAGTATCAATTCC
1 TC-TTGAAAATAAAATTTTCAAAAA-A-ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
* * *
7158070 TATTGAAAATAAAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTAAAAATATCAATTTT
1 TCTTGAAAAT-AAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
7158130 TCTTGAAAATAAAATTTTCAAAAAAATATTTTTTGAGGAAAAG-TGAAAAGTATCAATTTTT
1 TCTTGAAAATAAAATTTTCAAAAAAATA-TTTTTGAGGAAAAGTTG-AAAGTATCAA-TTTT
* ** *
7158191 TCTTAAAAATAAAATTTTCAAAAAAACGTTTTTGA-GAAAAGGTTGCAAGTATCAATTTT
1 TCTTGAAAATAAAATTTTCAAAAAAATATTTTTGAGGAAAA-GTTGAAAGTATCAATTTT
* * **
7158250 CCTTGAAAATAAAGA-TTTCAAAAAAATATTTTTTGAGAAAAAGTTGAAAAGTGCCAATTTT
1 TCTTGAAAATAAA-ATTTTCAAAAAAATA-TTTTTGAGGAAAAGTTG-AAAGTATCAATTTT
* ** *
7158311 CCTTGAAAATAAAATTTTCAAAAAAGCATTTTTGAGGAAAAGTTGAAAATATCAATTTT
1 TCTTGAAAATAAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
* * * * *
7158370 TCTCGAAAATAAAAATTTCAAGAAAAACATTTTTAAGGAAAAGTTAAAAGTATCAATTTT
1 TCTTGAAAATAAAATTTTCAA-AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
* * * *
7158430 TTTTGAAAATAAAATTTTTAAAAAATTATTTTTGAGGAAAAGTTGAAAGTACCAATTTT
1 TCTTGAAAATAAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
* * *
7158489 TCTTGAAAATAAAATTCTCAAGAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATTTT
1 TCTTGAAAATAAAATTTTCAA-AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
7158549 TCTTGAA
1 TCTTGAA
7158556 TAAAAGCATG
Statistics
Matches: 464, Mismatches: 63, Indels: 39
0.82 0.11 0.07
Matches are distributed among these distances:
58 12 0.03
59 158 0.34
60 205 0.44
61 78 0.17
62 11 0.02
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.35
Consensus pattern (59 bp):
TCTTGAAAATAAAATTTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
Found at i:7161785 original size:15 final size:15
Alignment explanation
Indices: 7161765--7161801 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
7161755 TTTGCGTGCA
7161765 TGCATTTTCATTCAT
1 TGCATTTTCATTCAT
*
7161780 TGCATTCTCATTCAT
1 TGCATTTTCATTCAT
*
7161795 TACATTT
1 TGCATTT
7161802 AACAAAATAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.05, T:0.51
Consensus pattern (15 bp):
TGCATTTTCATTCAT
Found at i:7163190 original size:18 final size:18
Alignment explanation
Indices: 7163169--7163205 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
7163159 CTTTAACCAC
7163169 AACCACCCACATACATAT
1 AACCACCCACATACATAT
7163187 AACCACCCACATACATAT
1 AACCACCCACATACATAT
7163205 A
1 A
7163206 CAATTTATCA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.46, C:0.38, G:0.00, T:0.16
Consensus pattern (18 bp):
AACCACCCACATACATAT
Found at i:7170408 original size:86 final size:86
Alignment explanation
Indices: 7170051--7170946 Score: 591
Period size: 86 Copynumber: 10.6 Consensus size: 86
7170041 GTCCAGATTA
* * * * * * ** *
7170051 TTCAGACTGCGATTCAGTCCAGGTCATTTT-GTTTTAGATTTTGACTTATGTTAGATCTTTCGTT
1 TTCAGACTTCGGTTCAATCCAAGTCATTTTATTTTTGGATTTTGACTTATGCCAAATCTTTC-TT
* * *
7170115 -AGCTTAGTCTAAGTCACTT-AT
65 CGGCTTAGTCCAAGTTA-TTCAT
* * * * * * *
7170136 TTCAGACTTCAGTTCAATCCAAGTTATTTCA-TTTTGGA-TTTCAGCCTATGCCAGATCCTTCTT
1 TTCAGACTTCGGTTCAATCCAAGTCATTTTATTTTTGGATTTTGA-CTTATGCCAAATCTTTCTT
* * * *
7170199 CGG-TTCAGTTCAAATCATTTAT
65 CGGCTT-AGTCCAAGTTATTCAT
* * * * * * *
7170221 TTTAGACTTCGGTTCAATCCAGGTCATTTCATTTTT-TATTTTGGCCTATGCCAGATCTTTCTTC
1 TTCAGACTTCGGTTCAATCCAAGTCATTTTATTTTTGGATTTTGACTTATGCCAAATCTTTCTTC
* * * * * **
7170285 AGCTCAGTCTAAATAATTTTT
66 GGCTTAGTCCAAGTTATTCAT
* * * * * * *
7170306 TTTAGACTTGGGTTCAATCTAAGTCATTTTGTTTTTGGATTTTGACGTATGCCAGATCTTTCTTT
1 TTCAGACTTCGGTTCAATCCAAGTCATTTTATTTTTGGATTTTGACTTATGCCAAATCTTTCTTC
*
7170371 GGCTTAGTCCAAGTCATTCAT
66 GGCTTAGTCCAAGTTATTCAT
* ** * * * * *** * * *
7170392 TTCAAACTTCAATTCAATACAGGTCATTCTGTTTTCAAATTTTAACTTATGTCAAATCATTCTTC
1 TTCAGACTTCGGTTCAATCCAAGTCATTTTATTTTTGGATTTTGACTTATGCCAAATCTTTCTTC
7170457 GGCTTAGTCCAAGTTATTCAT
66 GGCTTAGTCCAAGTTATTCAT
* * * *
7170478 TTCAGACTTTGG-T---T-C-AGTC----TGTTTTTGAATTTTGACTTATGTCAAATCATTT-TT
1 TTCAGACTTCGGTTCAATCCAAGTCATTTTATTTTTGGATTTTGACTTATGCCAAATC-TTTCTT
* * *
7170532 TGGCTCAGTCTAAGTTATTTCAT
65 CGGCTTAGTCCAAGTTA-TTCAT
* * * *
7170555 TTCAGACTTCGGTTCAATCCAGGTCATTTTATTTTTGGATTTTGGCCTATGCCAAATCTCTCTTC
1 TTCAGACTTCGGTTCAATCCAAGTCATTTTATTTTTGGATTTTGACTTATGCCAAATCTTTCTTC
* * * *
7170620 AGCTCAGTCTAAGTTATTTAT
66 GGCTTAGTCCAAGTTATTCAT
* * * * * * * * * *
7170641 TTCAGACTTTGATTCAATCCAGGTCACTCTATTTTTAGATTTCGACCTATGCCAGATCCTTCTTC
1 TTCAGACTTCGGTTCAATCCAAGTCATTTTATTTTTGGATTTTGACTTATGCCAAATCTTTCTTC
*
7170706 GG-TTCAGT-CTAGATTATTCAT
66 GGCTT-AGTCCAAG-TTATTCAT
* * * * * *
7170727 TTTAGGCTTCGGTTCAGTCCAAGTCATTTTATTTTTGGATTTTGATTTATGTCAAATCCTTCTTC
1 TTCAGACTTCGGTTCAATCCAAGTCATTTTATTTTTGGATTTTGACTTATGCCAAATCTTTCTTC
*
7170792 AGCTTAGTCCAAGTTATTCAT
66 GGCTTAGTCCAAGTTATTCAT
* * * * ** *
7170813 TTTAGACTTCGGTTCCATCCAAGTCATTTTTTTTTTAGATTTCAACTTATGTCAAATCTTTCTTC
1 TTCAGACTTCGGTTCAATCCAAGTCATTTTATTTTTGGATTTTGACTTATGCCAAATCTTTCTTC
**
7170878 GATTTAGTCCAAG-TATTCAT
66 GGCTTAGTCCAAGTTATTCAT
* * * * *
7170898 TTCATACTTCTGTTTC-ATCCAGGTTATTTTA--TTT-GATTTTGGCTTATGC
1 TTCAGACTTC-GGTTCAATCCAAGTCATTTTATTTTTGGATTTTGACTTATGC
7170947 TAAACTTCGA
Statistics
Matches: 642, Mismatches: 142, Indels: 57
0.76 0.17 0.07
Matches are distributed among these distances:
76 42 0.07
77 18 0.03
78 1 0.00
80 3 0.00
81 2 0.00
82 13 0.02
83 6 0.01
84 10 0.02
85 175 0.27
86 326 0.51
87 46 0.07
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.45
Consensus pattern (86 bp):
TTCAGACTTCGGTTCAATCCAAGTCATTTTATTTTTGGATTTTGACTTATGCCAAATCTTTCTTC
GGCTTAGTCCAAGTTATTCAT
Found at i:7170547 original size:76 final size:77
Alignment explanation
Indices: 7170419--7170570 Score: 225
Period size: 76 Copynumber: 2.0 Consensus size: 77
7170409 TACAGGTCAT
*
7170419 TCTGTTTTCAAATTTTAACTTATGTCAAATCATTCTTCGGCTTAGTCCAAGTTA-TTCATTTCAG
1 TCTGTTTTCAAATTTTAACTTATGTCAAATCATTCTTCGGCTCAGTCCAAGTTATTTCATTTCAG
*
7170483 ACTTTGGTTCAG
66 ACTTCGGTTCAG
** * * * *
7170495 TCTGTTTTTGAATTTTGACTTATGTCAAATCATTTTTTGGCTCAGTCTAAGTTATTTCATTTCAG
1 TCTGTTTTCAAATTTTAACTTATGTCAAATCATTCTTCGGCTCAGTCCAAGTTATTTCATTTCAG
7170560 ACTTCGGTTCA
66 ACTTCGGTTCA
7170571 ATCCAGGTCA
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
76 47 0.70
77 20 0.30
ACGTcount: A:0.22, C:0.17, G:0.14, T:0.47
Consensus pattern (77 bp):
TCTGTTTTCAAATTTTAACTTATGTCAAATCATTCTTCGGCTCAGTCCAAGTTATTTCATTTCAG
ACTTCGGTTCAG
Found at i:7170727 original size:335 final size:333
Alignment explanation
Indices: 7170215--7170827 Score: 798
Period size: 335 Copynumber: 1.8 Consensus size: 333
7170205 AGTTCAAATC
* * * *
7170215 ATTTATTTTAGACTTCGGTTCAATCCAGGTCATTTCATTTTTTATTTTGGCCTATGCCAGATCTT
1 ATTTATTTCAGACTTCGGTTCAATCCAGGTCATTTCATTTTTGATTTTGGCCTATGCCAAATCTC
* * * * * * * *
7170280 TCTTCAGCTCAGTCTAAATAATTTTTTTTAGACTTGGGTTCAATCTAAGTCATTTTGTTTTTGGA
66 TCTTCAGCTCAGTCTAAATAATTTATTTCAGACTTGGATTCAATCCAAGTCACTCTATTTTTAGA
* * * *
7170345 TTTTGACGTATGCCAGATCTTTCTTTGGCTTAGTCCAAGTCATTCATTTCAAACTTCAATTCAAT
131 TTTCGACCTATGCCAGATCCTTCTTCGGCTTAGTCCAAGTCATTCATTTCAAACTTCAATTCAAT
* * *
7170410 ACAGGTCATTCTGTTTTCAAATTTTAACTTATGTCAAATCATTCTTCGGCTTAGTCCAAGTTATT
196 ACAAGTCATTCTATTTTCAAATTTTAACTTATGTCAAATCATTCTTCAGCTTAGTCCAAGTTATT
*
7170475 CATTTCAGACTTTGGTTCAGTCTGTTTTTGAATTTTGACTTATGTCAAATCATTTTTTGGCTCAG
261 CATTTCAGACTTCGGTTCAGTCTGTTTTTGAATTTTGACTTATGTCAAATCATTTTTTGGCTCAG
7170540 TCTAAGTT
326 TCTAAGTT
*
7170548 ATTTCATTTCAGACTTCGGTTCAATCCAGGTCATTTTATTTTTGGATTTTGGCCTATGCCAAATC
1 ATTT-ATTTCAGACTTCGGTTCAATCCAGGTCATTTCATTTTT-GATTTTGGCCTATGCCAAATC
* * * *
7170613 TCTCTTCAGCTCAGTCTAAGTTATTTATTTCAGACTTTGATTCAATCCAGGTCACTCTATTTTTA
64 TCTCTTCAGCTCAGTCTAAATAATTTATTTCAGACTTGGATTCAATCCAAGTCACTCTATTTTTA
* * * ** **
7170678 GATTTCGACCTATGCCAGATCCTTCTTCGG-TTCAGT-CTAGATTATTCATTTTAGGCTTCGGTT
129 GATTTCGACCTATGCCAGATCCTTCTTCGGCTT-AGTCCAAG-TCATTCATTTCAAACTTCAATT
* * * *** * * *
7170741 CAGTCCAAGTCATTTTATTTTTGGATTTTGATTTATGTCAAATCCTTCTTCAGCTTAGTCCAAGT
192 CAATACAAGTCATTCTATTTTCAAATTTTAACTTATGTCAAATCATTCTTCAGCTTAGTCCAAGT
*
7170806 TATTCATTTTAGACTTCGGTTC
257 TATTCATTTCAGACTTCGGTTC
7170828 CATCCAAGTC
Statistics
Matches: 234, Mismatches: 42, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
333 4 0.02
334 41 0.18
335 189 0.81
ACGTcount: A:0.22, C:0.19, G:0.14, T:0.45
Consensus pattern (333 bp):
ATTTATTTCAGACTTCGGTTCAATCCAGGTCATTTCATTTTTGATTTTGGCCTATGCCAAATCTC
TCTTCAGCTCAGTCTAAATAATTTATTTCAGACTTGGATTCAATCCAAGTCACTCTATTTTTAGA
TTTCGACCTATGCCAGATCCTTCTTCGGCTTAGTCCAAGTCATTCATTTCAAACTTCAATTCAAT
ACAAGTCATTCTATTTTCAAATTTTAACTTATGTCAAATCATTCTTCAGCTTAGTCCAAGTTATT
CATTTCAGACTTCGGTTCAGTCTGTTTTTGAATTTTGACTTATGTCAAATCATTTTTTGGCTCAG
TCTAAGTT
Found at i:7171593 original size:10 final size:11
Alignment explanation
Indices: 7171576--7171603 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
7171566 TGATTTTTCT
7171576 AAATTTTTTGG
1 AAATTTTTTGG
7171587 AAATTTTTTGG
1 AAATTTTTTGG
7171598 AAATTT
1 AAATTT
7171604 CCAAAATTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.14, T:0.54
Consensus pattern (11 bp):
AAATTTTTTGG
Found at i:7172190 original size:60 final size:60
Alignment explanation
Indices: 7172125--7172612 Score: 346
Period size: 60 Copynumber: 8.1 Consensus size: 60
7172115 TTCAATGATC
*
7172125 TTTTT-AAAATAAAATTTTGAAAAAAAAATATTTTTGAAAG-AAAGTTAAAAGTGTCAATT
1 TTTTTGAAAATAAAATTTT-AAAAAAAAATATTTTTGAAAGAAAAGTTAAAAGTATCAATT
* * * *
7172184 TTTTTTAAAATAAAA--ATAAAAAATATATATATTTTTGAGA-AAAAGTTGAAAGTATCAATT
1 TTTTTGAAAATAAAATTTTAAAAAA-A-A-ATATTTTTGAAAGAAAAGTTAAAAGTATCAATT
** * *
7172244 TCCATTGAAAATAAAAATTTTCAAAAAAAAATATTTTTG-AGGAAAAG-TAGAAAATATCAATT
1 T-TTTTGAAAAT-AAAATTTT-AAAAAAAAATATTTTTGAAAGAAAAGTTA-AAAGTATCAATT
* * * * **
7172306 TTCCTTGAAAATAAAGATTTCAAAAAAATAT-TTTTTG-AGGAAAAGTTGAAAA-TGCCAATT
1 TT-TTTGAAAATAAA-ATTTTAAAAAAAAATATTTTTGAAAGAAAAGTT-AAAAGTATCAATT
*** * * *
7172366 TTTCTTGAAAATAAAATTTTAAAAAAGCGT-TTTTT--AGGAAAAATTGAAAGTATCAATT
1 TTT-TTGAAAATAAAATTTTAAAAAAAAATATTTTTGAAAGAAAAGTTAAAAGTATCAATT
** * * *
7172424 TTTCTCAAAAATAAAGA-TTTCAAGAAAAACATTTTT--AAGAAAAAGTTAAAAGTATCAATT
1 TTT-TTGAAAATAAA-ATTTTAAAAAAAAATATTTTTGAAAG-AAAAGTTAAAAGTATCAATT
* * * * * *
7172484 TTTTTAAAAAATAAAATTTTCAAAAAAAATAGTTTTG-AGGAAAAGTTGAAAGTACCAATT
1 TTTTT-GAAAATAAAATTTTAAAAAAAAATATTTTTGAAAGAAAAGTTAAAAGTATCAATT
* * * * * *
7172544 TTTCTTGAAAATAAAATTCTCAAGAAAAACATTTTT-AAGGAAAAGTTGAAAGTATCAATT
1 TTT-TTGAAAATAAAATTTTAAAAAAAAATATTTTTGAAAGAAAAGTTAAAAGTATCAATT
7172604 TTTCTTGAA
1 TTT-TTGAA
7172613 TAAAAGCATG
Statistics
Matches: 352, Mismatches: 51, Indels: 51
0.78 0.11 0.11
Matches are distributed among these distances:
57 9 0.03
58 37 0.11
59 32 0.09
60 194 0.55
61 28 0.08
62 43 0.12
63 1 0.00
64 2 0.01
65 6 0.02
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.35
Consensus pattern (60 bp):
TTTTTGAAAATAAAATTTTAAAAAAAAATATTTTTGAAAGAAAAGTTAAAAGTATCAATT
Found at i:7172507 original size:178 final size:182
Alignment explanation
Indices: 7172214--7172608 Score: 486
Period size: 178 Copynumber: 2.2 Consensus size: 182
7172204 AAATATATAT
* * ** *
7172214 ATTTTTGA-GAAAAAGTTGAAAGTATCAA-TTTCCATTGAAAATAAAAATTTTCAAAAAAAAATA
1 ATTTTTAAGGAAAAA-TTGAAAGTATCAATTTTTC-TCAAAAATAAAAATTTTCAAAAAAAAACA
* * * *
7172277 TTTTTGAGGAAAAGTAGAAAATATCAATTTTCCTTGAAAATAAAGATTTC-AAAAAAATATTTTT
64 TTTTTAAGAAAAAGTAGAAAATATCAATTTTCCTTAAAAATAAAGATTTCAAAAAAAATA-GTTT
* * *
7172341 TGAGGAAAAGTTGAAAATGCCAATTTTTCTTGAAAATAAAATT-TTAA-AAAAGC
128 TGAGGAAAAGTTGAAAATACCAATTTTTCTTGAAAATAAAATTCTCAAGAAAAAC
* * * *
7172394 GTTTTTTAGGAAAAATTGAAAGTATCAATTTTTCTCAAAAATAAAGA-TTTC-AAGAAAAACATT
1 ATTTTTAAGGAAAAATTGAAAGTATCAATTTTTCTCAAAAATAAAAATTTTCAAAAAAAAACATT
* *
7172457 TTTAAGAAAAAGTTA-AAAGTATCAATTTT-TTTAAAAAATAAA-ATTTTCAAAAAAAATAGTTT
66 TTTAAGAAAAAG-TAGAAAATATCAATTTTCCTT-AAAAATAAAGA-TTTCAAAAAAAATAGTTT
*
7172519 TGAGGAAAAGTTGAAAGTACCAATTTTTCTTGAAAATAAAATTCTCAAGAAAAAC
128 TGAGGAAAAGTTGAAAATACCAATTTTTCTTGAAAATAAAATTCTCAAGAAAAAC
*
7172574 ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTTCT
1 ATTTTTAAGGAAAAATTGAAAGTATCAATTTTTCT
7172609 TGAATAAAAG
Statistics
Matches: 186, Mismatches: 21, Indels: 16
0.83 0.09 0.07
Matches are distributed among these distances:
177 3 0.02
178 89 0.48
179 18 0.10
180 66 0.35
181 10 0.05
ACGTcount: A:0.48, C:0.07, G:0.11, T:0.34
Consensus pattern (182 bp):
ATTTTTAAGGAAAAATTGAAAGTATCAATTTTTCTCAAAAATAAAAATTTTCAAAAAAAAACATT
TTTAAGAAAAAGTAGAAAATATCAATTTTCCTTAAAAATAAAGATTTCAAAAAAAATAGTTTTGA
GGAAAAGTTGAAAATACCAATTTTTCTTGAAAATAAAATTCTCAAGAAAAAC
Found at i:7172557 original size:120 final size:119
Alignment explanation
Indices: 7172125--7172612 Score: 467
Period size: 120 Copynumber: 4.1 Consensus size: 119
7172115 TTCAATGATC
* * * * *
7172125 TTTTT-AAAATAAAATTTTGAAAAAAAAATATTTTTGA-AAGAAAGTTAAAAGTGTCAATTTTT-
1 TTTTTGAAAATAAAATTTT-CAAAAAAAATAGTTTTGAGGA-AAAGTTGAAAGTATCAATTTTTC
* * * * * * *
7172187 TTTAAAATAAA-A-ATAAAAAATATATATATTTTTGAGAAAAAGTTGAAAGTATCAATT
64 TTGAAAATAAAGATTTCAAGAA-A-A-ACATTTTTAAGAAAAAGTTAAAAGTATCAATT
** * * * *
7172244 TCCATTGAAAATAAAAATTTTCAAAAAAAAATATTTTTGAGGAAAAGTAGAAAATATCAATTTTC
1 T-TTTTGAAAAT-AAAATTTTC-AAAAAAAATAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTT
* * * **
7172309 CTTGAAAATAAAGATTTCAA-AAAAATATTTTTTGAGGAAAAGTTGAAAA-TGCCAATT
63 CTTGAAAATAAAGATTTCAAGAAAAACA-TTTTTAAGAAAAAGTT-AAAAGTATCAATT
** * *
7172366 TTTCTTGAAAATAAAATTTT---AAAAAAGCGTTTTTTAGGAAAAATTGAAAGTATCAATTTTTC
1 TTT-TTGAAAATAAAATTTTCAAAAAAAATAG-TTTTGAGGAAAAGTTGAAAGTATCAATTTTTC
**
7172428 TCAAAAATAAAGATTTCAAGAAAAACATTTTTAAGAAAAAGTTAAAAGTATCAATT
64 TTGAAAATAAAGATTTCAAGAAAAACATTTTTAAGAAAAAGTTAAAAGTATCAATT
* *
7172484 TTTTTAAAAAATAAAATTTTCAAAAAAAATAGTTTTGAGGAAAAGTTGAAAGTACCAATTTTTCT
1 TTTTT-GAAAATAAAATTTTCAAAAAAAATAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
* *
7172549 TGAAAATAAA-ATTCTCAAGAAAAACATTTTTAAGGAAAAGTTGAAAGTATCAATT
65 TGAAAATAAAGATT-TCAAGAAAAACATTTTTAAGAAAAAGTTAAAAGTATCAATT
7172604 TTTCTTGAA
1 TTT-TTGAA
7172613 TAAAAGCATG
Statistics
Matches: 305, Mismatches: 44, Indels: 39
0.79 0.11 0.10
Matches are distributed among these distances:
117 12 0.04
118 80 0.26
119 10 0.03
120 84 0.28
121 25 0.08
122 73 0.24
123 15 0.05
124 3 0.01
125 3 0.01
ACGTcount: A:0.49, C:0.06, G:0.11, T:0.35
Consensus pattern (119 bp):
TTTTTGAAAATAAAATTTTCAAAAAAAATAGTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTT
GAAAATAAAGATTTCAAGAAAAACATTTTTAAGAAAAAGTTAAAAGTATCAATT
Found at i:7173581 original size:15 final size:15
Alignment explanation
Indices: 7173561--7173592 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7173551 CGATTGTGTA
7173561 TTTGGGTTTATTAAT
1 TTTGGGTTTATTAAT
*
7173576 TTTGGGTTTCTTAAT
1 TTTGGGTTTATTAAT
7173591 TT
1 TT
7173593 AACTTTTACA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.03, G:0.19, T:0.62
Consensus pattern (15 bp):
TTTGGGTTTATTAAT
Found at i:7174408 original size:2 final size:2
Alignment explanation
Indices: 7174401--7174433 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
7174391 TTTAATTTTC
*
7174401 AT AT AT AT CT AT AT AT AT -T AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7174434 TACTTCACGC
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.52
Consensus pattern (2 bp):
AT
Found at i:7174428 original size:15 final size:15
Alignment explanation
Indices: 7174404--7174435 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
7174394 AATTTTCATA
*
7174404 TATATCTATATATAT
1 TATATATATATATAT
7174419 TATATATATATATAT
1 TATATATATATATAT
7174434 TA
1 TA
7174436 CTTCACGCGA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (15 bp):
TATATATATATATAT
Found at i:7174719 original size:17 final size:18
Alignment explanation
Indices: 7174686--7174719 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
7174676 AGTTACTTAT
7174686 TAATTTCAAAATGTCTAA
1 TAATTTCAAAATGTCTAA
*
7174704 TAATTT-AAAATTTCTA
1 TAATTTCAAAATGTCTA
7174720 TTATATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.44, C:0.09, G:0.03, T:0.44
Consensus pattern (18 bp):
TAATTTCAAAATGTCTAA
Found at i:7175147 original size:18 final size:18
Alignment explanation
Indices: 7175124--7175161 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
7175114 TATTTAATGC
*
7175124 TTAAAAATTAATAAATTA
1 TTAAAAAATAATAAATTA
*
7175142 TTAAAAAATATTAAATTA
1 TTAAAAAATAATAAATTA
7175160 TT
1 TT
7175162 TTATGTCAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (18 bp):
TTAAAAAATAATAAATTA
Found at i:7176280 original size:11 final size:10
Alignment explanation
Indices: 7176254--7176328 Score: 66
Period size: 10 Copynumber: 7.6 Consensus size: 10
7176244 GAATTAAAAG
7176254 AAATTTTTAA
1 AAATTTTTAA
7176264 AAATTTATTATA
1 AAATTT-TTA-A
*
7176276 AATTTTTTAA
1 AAATTTTTAA
7176286 AAATTTTTAA
1 AAATTTTTAA
* *
7176296 AAA-TATGAA
1 AAATTTTTAA
*
7176305 ATA-TTTTAA
1 AAATTTTTAA
*
7176314 AAA-TTATAA
1 AAATTTTTAA
7176323 AAATTT
1 AAATTT
7176329 AAAAATTATG
Statistics
Matches: 53, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
9 20 0.38
10 21 0.40
11 6 0.11
12 6 0.11
ACGTcount: A:0.52, C:0.00, G:0.01, T:0.47
Consensus pattern (10 bp):
AAATTTTTAA
Found at i:7176292 original size:9 final size:9
Alignment explanation
Indices: 7176280--7176359 Score: 67
Period size: 9 Copynumber: 9.0 Consensus size: 9
7176270 ATTATAAATT
7176280 TTTTAAAAA
1 TTTTAAAAA
7176289 TTTTTAAAAA
1 -TTTTAAAAA
* * *
7176299 TATGAAATA
1 TTTTAAAAA
7176308 TTTTAAAAA
1 TTTTAAAAA
*
7176317 TTATAAAAA
1 TTTTAAAAA
7176326 -TTTAAAAA
1 TTTTAAAAA
* *
7176334 TTAT-GAAA
1 TTTTAAAAA
7176342 -TTTAAAAA
1 TTTTAAAAA
7176350 TTTTCAAAAA
1 TTTT-AAAAA
7176360 AAATCTAAAA
Statistics
Matches: 54, Mismatches: 12, Indels: 8
0.73 0.16 0.11
Matches are distributed among these distances:
7 2 0.04
8 13 0.24
9 25 0.46
10 14 0.26
ACGTcount: A:0.56, C:0.01, G:0.03, T:0.40
Consensus pattern (9 bp):
TTTTAAAAA
Found at i:7176315 original size:17 final size:19
Alignment explanation
Indices: 7176286--7176342 Score: 77
Period size: 17 Copynumber: 3.2 Consensus size: 19
7176276 AATTTTTTAA
7176286 AAAT-TTTTAAAAA-TATG
1 AAATATTTTAAAAATTATG
7176303 AAATATTTTAAAAATTAT-
1 AAATATTTTAAAAATTATG
*
7176321 AAA-AATTTAAAAATTATG
1 AAATATTTTAAAAATTATG
7176339 AAAT
1 AAAT
7176343 TTAAAAATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
17 17 0.49
18 15 0.43
19 3 0.09
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.39
Consensus pattern (19 bp):
AAATATTTTAAAAATTATG
Found at i:7176349 original size:17 final size:16
Alignment explanation
Indices: 7176291--7176351 Score: 70
Period size: 16 Copynumber: 3.6 Consensus size: 16
7176281 TTTAAAAATT
7176291 TTTAAAAA-TATGAAATA
1 TTTAAAAATTATG-AA-A
*
7176308 TTTTAAAAATTATAAAAA
1 -TTTAAAAATTAT-GAAA
7176326 TTTAAAAATTATGAAA
1 TTTAAAAATTATGAAA
7176342 TTTAAAAATT
1 TTTAAAAATT
7176352 TTCAAAAAAA
Statistics
Matches: 39, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
16 13 0.33
17 12 0.31
18 9 0.23
19 5 0.13
ACGTcount: A:0.57, C:0.00, G:0.03, T:0.39
Consensus pattern (16 bp):
TTTAAAAATTATGAAA
Found at i:7183668 original size:23 final size:23
Alignment explanation
Indices: 7183642--7183687 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
7183632 AAAAATACCT
7183642 ATTT-ATAAAATATCAATTCTATC
1 ATTTAATAAAATAT-AATTCTATC
* *
7183665 ATTTAATAAATTATAATTTTATC
1 ATTTAATAAAATATAATTCTATC
7183688 CTTTTTATAC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (23 bp):
ATTTAATAAAATATAATTCTATC
Found at i:7187731 original size:12 final size:12
Alignment explanation
Indices: 7187714--7187738 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7187704 TTGTATCTAA
7187714 ATAAAAAAAATT
1 ATAAAAAAAATT
7187726 ATAAAAAAAATT
1 ATAAAAAAAATT
7187738 A
1 A
7187739 ATCATCCTCT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (12 bp):
ATAAAAAAAATT
Found at i:7191785 original size:20 final size:20
Alignment explanation
Indices: 7191744--7191786 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
7191734 GTAAAATGAC
*
7191744 ATATTTATATCATTAATTTT
1 ATATTTATATCATTAATATT
*
7191764 ATATTTATTATTATT-ATATT
1 ATATTTA-TATCATTAATATT
7191784 ATA
1 ATA
7191787 AATATATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.37, C:0.02, G:0.00, T:0.60
Consensus pattern (20 bp):
ATATTTATATCATTAATATT
Found at i:7191852 original size:11 final size:11
Alignment explanation
Indices: 7191811--7191852 Score: 50
Period size: 11 Copynumber: 3.9 Consensus size: 11
7191801 CGTAAATTAT
7191811 TTTAATTT-AA
1 TTTAATTTAAA
7191821 TTTAATTTAAA
1 TTTAATTTAAA
**
7191832 TAAAATTTAAA
1 TTTAATTTAAA
*
7191843 TTTAACTTAA
1 TTTAATTTAA
7191853 TTATTGTCAA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
10 8 0.31
11 18 0.69
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (11 bp):
TTTAATTTAAA
Found at i:7191969 original size:19 final size:19
Alignment explanation
Indices: 7191945--7191992 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
7191935 AATTTATGAA
7191945 TTTAATTAAATTTTTATAT
1 TTTAATTAAATTTTTATAT
* *
7191964 TTTAA-TATATTTTTTATTT
1 TTTAATTA-AATTTTTATAT
7191983 TTTAATTAAA
1 TTTAATTAAA
7191993 AAATTATTAT
Statistics
Matches: 24, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
18 2 0.08
19 20 0.83
20 2 0.08
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (19 bp):
TTTAATTAAATTTTTATAT
Found at i:7197713 original size:52 final size:53
Alignment explanation
Indices: 7197657--7197782 Score: 148
Period size: 52 Copynumber: 2.4 Consensus size: 53
7197647 TCCTCTCTTC
* * * * *
7197657 TTAGAATTTTTCTCCTGTAAGTTAAACTTGCCTATTAAGAATCC-CTTTCCTT
1 TTAGAATTCTTCTACTGCAAGTCAAACTTACCTATTAAGAATCCTCTTTCCTT
* *
7197709 TTAGAATTCTTCTATTGCAAGTCAAACTTACCTATTAAGAATCCTCTTT-CTC
1 TTAGAATTCTTCTACTGCAAGTCAAACTTACCTATTAAGAATCCTCTTTCCTT
* **
7197761 TTGGAATTCTTCTTTTGCAAGT
1 TTAGAATTCTTCTACTGCAAGT
7197783 ATTCTTGTCT
Statistics
Matches: 64, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
52 60 0.94
53 4 0.06
ACGTcount: A:0.25, C:0.21, G:0.10, T:0.44
Consensus pattern (53 bp):
TTAGAATTCTTCTACTGCAAGTCAAACTTACCTATTAAGAATCCTCTTTCCTT
Found at i:7197833 original size:22 final size:22
Alignment explanation
Indices: 7197808--7197850 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7197798 GCAATATCTG
*
7197808 ACAAATCCCAAATAAATCTCTA
1 ACAAATCCCAAACAAATCTCTA
7197830 ACAAATCCCAAACAAATCTCT
1 ACAAATCCCAAACAAATCTCT
7197851 TATGGGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.30, G:0.00, T:0.21
Consensus pattern (22 bp):
ACAAATCCCAAACAAATCTCTA
Found at i:7198133 original size:25 final size:25
Alignment explanation
Indices: 7198100--7198208 Score: 116
Period size: 25 Copynumber: 4.4 Consensus size: 25
7198090 CTTCCCAAAC
*
7198100 CTTT-AGCTCTTCTCACATCTCGAA
1 CTTTCAGCTCTTTTCACATCTCGAA
7198124 CTTTCAGCTC-TTTCACATCTCGAA
1 CTTTCAGCTCTTTTCACATCTCGAA
* * *
7198148 CCTTCGGCTCTTTTCACATCTTGAA
1 CTTTCAGCTCTTTTCACATCTCGAA
* * *
7198173 -TCTTCAACTCTTTTCACGTTTCGAA
1 CT-TTCAGCTCTTTTCACATCTCGAA
*
7198198 CCTTCAGCTCT
1 CTTTCAGCTCT
7198209 GATACCATTT
Statistics
Matches: 69, Mismatches: 12, Indels: 7
0.78 0.14 0.08
Matches are distributed among these distances:
24 25 0.36
25 44 0.64
ACGTcount: A:0.18, C:0.33, G:0.09, T:0.39
Consensus pattern (25 bp):
CTTTCAGCTCTTTTCACATCTCGAA
Found at i:7198184 original size:49 final size:50
Alignment explanation
Indices: 7198097--7198208 Score: 138
Period size: 49 Copynumber: 2.3 Consensus size: 50
7198087 GCACTTCCCA
* *
7198097 AACCTTTAGCTCTTCTCACATCTCGAACTTTCAGCTC-TTTCACATCTCG
1 AACCTTCAGCTCTTCTCACATCTCGAACTTTCAACTCTTTTCACATCTCG
* * * * *
7198146 AACCTTCGGCTCTTTTCACATCTTGAA-TCTTCAACTCTTTTCACGTTTCG
1 AACCTTCAGCTCTTCTCACATCTCGAACT-TTCAACTCTTTTCACATCTCG
7198196 AACCTTCAGCTCT
1 AACCTTCAGCTCT
7198209 GATACCATTT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
48 1 0.02
49 30 0.57
50 22 0.42
ACGTcount: A:0.20, C:0.33, G:0.09, T:0.38
Consensus pattern (50 bp):
AACCTTCAGCTCTTCTCACATCTCGAACTTTCAACTCTTTTCACATCTCG
Found at i:7198791 original size:52 final size:53
Alignment explanation
Indices: 7198706--7198860 Score: 203
Period size: 52 Copynumber: 3.0 Consensus size: 53
7198696 ATAACCATAT
* * *
7198706 AAACTTACCCATTAAGAATCCCTCT-CCTCTTAGAATTCTTCTTC-TGTAAGTC
1 AAACTTACCTATTAAGAATCCCTTTCCCT-TTAGAATTCTTCTTCTTGCAAGTC
*
7198758 AAACTTGCCTATTAAGAATCCCTTTCCCTTTAGAATTCTTC-TCTTGCAAGTC
1 AAACTTACCTATTAAGAATCCCTTTCCCTTTAGAATTCTTCTTCTTGCAAGTC
* *
7198810 AAACTTACCTATTAAGAATCCCCTTTCTC-TTGGAATTCTTCTT-TTGCAAGT
1 AAACTTACCTATTAAGAAT-CCCTTTCCCTTTAGAATTCTTCTTCTTGCAAGT
7198861 ATTTTTGTCC
Statistics
Matches: 92, Mismatches: 7, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
51 2 0.02
52 78 0.85
53 12 0.13
ACGTcount: A:0.26, C:0.26, G:0.09, T:0.39
Consensus pattern (53 bp):
AAACTTACCTATTAAGAATCCCTTTCCCTTTAGAATTCTTCTTCTTGCAAGTC
Found at i:7198904 original size:11 final size:11
Alignment explanation
Indices: 7198888--7198927 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
7198878 AATATCTGAC
7198888 AAATCTCAAAT
1 AAATCTCAAAT
* *
7198899 AAATCTCTAAC
1 AAATCTCAAAT
*
7198910 AAATCCCAAAT
1 AAATCTCAAAT
7198921 AAATCTC
1 AAATCTC
7198928 TTATGGGATT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.50, C:0.25, G:0.00, T:0.25
Consensus pattern (11 bp):
AAATCTCAAAT
Found at i:7198911 original size:22 final size:22
Alignment explanation
Indices: 7198886--7198928 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
7198876 GCAATATCTG
*
7198886 ACAAATCTCAAATAAATCTCTA
1 ACAAATCCCAAATAAATCTCTA
7198908 ACAAATCCCAAATAAATCTCT
1 ACAAATCCCAAATAAATCTCT
7198929 TATGGGATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.49, C:0.26, G:0.00, T:0.26
Consensus pattern (22 bp):
ACAAATCCCAAATAAATCTCTA
Found at i:7200642 original size:16 final size:16
Alignment explanation
Indices: 7200621--7200651 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
7200611 ACTTTCTTCT
*
7200621 ATTTTTATTTTTATTC
1 ATTTTTATTTATATTC
7200637 ATTTTTATTTATATT
1 ATTTTTATTTATATT
7200652 TTTAAAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.74
Consensus pattern (16 bp):
ATTTTTATTTATATTC
Found at i:7201169 original size:29 final size:25
Alignment explanation
Indices: 7201110--7201183 Score: 71
Period size: 29 Copynumber: 2.8 Consensus size: 25
7201100 AGAAGTATAT
*
7201110 ATAAAAATATATATTT-TATTATTA
1 ATAAAATTATATATTTATATTATTA
*
7201134 ATTAAATTATATATTTATATATAATACTA
1 ATAAAATTATATATTTATAT-T-AT--TA
7201163 ATAAAATTAT-TATTTGATATT
1 ATAAAATTATATATTT-ATATT
7201184 TAAATTTAAC
Statistics
Matches: 41, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
24 14 0.34
25 3 0.07
26 1 0.02
27 2 0.05
28 6 0.15
29 15 0.37
ACGTcount: A:0.47, C:0.01, G:0.01, T:0.50
Consensus pattern (25 bp):
ATAAAATTATATATTTATATTATTA
Found at i:7203783 original size:2 final size:2
Alignment explanation
Indices: 7203776--7203801 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
7203766 TGGCATATGT
7203776 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
7203802 CGCATATGTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:7206027 original size:24 final size:23
Alignment explanation
Indices: 7205972--7206027 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
7205962 TTGTTAATCC
* *
7205972 AATTTTAATTAATTAATATAAAAA
1 AATTTT-ATTAAATAAAATAAAAA
*
7205996 ATTATTTATTAAATAAAATAAAAGA
1 AAT-TTTATTAAATAAAATAAAA-A
7206021 AATTTTA
1 AATTTTA
7206028 ACACTATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
24 20 0.77
25 6 0.23
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (23 bp):
AATTTTATTAAATAAAATAAAAA
Found at i:7210527 original size:221 final size:222
Alignment explanation
Indices: 7210134--7211550 Score: 1552
Period size: 221 Copynumber: 6.4 Consensus size: 222
7210124 TAAGAATTGA
* * * * * *
7210134 TTAAAGTAAAAATATGAGAATTATTGTAAAATTATTATCATTTGACATAAAATGTGTTAGAAATG
1 TTAACGTAAAAATATGAGAATTATCGTAAAATTAGTATCATTTGATATAAAATATGTTAGAAGTG
* ** * * * * *
7210199 TTGTAATGCCCTAAGAGAG-AGTTGTGATAATTTTAGACATAATGAAGGA-AAGAACAAGCGTAA
66 TCGTAACACCCTAAGAGAGTAGTTGTGATAATTCTAAACATAAT-AAAGATAAAAACAAGCATAA
* * * *
7210262 AAAGATATTATTGTAATGTAAATAATTAAATTGACAATGTAAAAGAATTATTACCTTAAACCCAA
130 AAAGATATTATTATAACGTAAATAATTAAATTGACAACGTAAAAAAATTATTACCTTAAACCCAA
* *
7210327 AGAATATTTCTAAACTAATAAATAAATG
195 AGAATAATTCTAAACCAATAAATAAATG
* * * * *
7210355 TTAATGTAAAAATAAGAGAATTATCATAAAATTAGTATCATTTGATATAATATATGTTAGAAGTA
1 TTAACGTAAAAATATGAGAATTATCGTAAAATTAGTATCATTTGATATAAAATATGTTAGAAGTG
* * * * * * **
7210420 TCATAACCCCCTAAGAGAGTA-TTGTGATAATTCTAAACAAAATAAAAATAAGAATAAGTGTAAA
66 TCGTAACACCCTAAGAGAGTAGTTGTGATAATTCTAAACATAATAAAGATAAAAACAAGCATAAA
* * *
7210484 AAGATATTATTATAACGTTAATAATTAAATTAACAACGTAAAAGAATTATTACCTTAAACCCAAA
131 AAGATATTATTATAACGTAAATAATTAAATTGACAACGTAAAAAAATTATTACCTTAAACCCAAA
* *
7210549 GAACAATTCTAAACCAAAAAATAAATG
196 GAATAATTCTAAACCAATAAATAAATG
* * * *
7210576 TTAACGTAAAAATGTGAGAATTATAGTAAAATTGGTATCATTTGATATAAAATATGTTAAAAGTG
1 TTAACGTAAAAATATGAGAATTATCGTAAAATTAGTATCATTTGATATAAAATATGTTAGAAGTG
* * * * * *
7210641 TCGTAGCACTCTAAGAGAGTA-TTGTGACAATTCTAAACGTAATAAAGGTAAAAATAAGCATAAA
66 TCGTAACACCCTAAGAGAGTAGTTGTGATAATTCTAAACATAATAAAGATAAAAACAAGCATAAA
* * * ** * * *
7210705 AAGATATTATTGTAATGCAAATAATTAAATTGACAATATAAAATAATTATAACTTTAAACCCAAA
131 AAGATATTATTATAACGTAAATAATTAAATTGACAACGTAAAAAAATTATTACCTTAAACCCAAA
*
7210770 GAATAATTATAAACCAATAAATAAATG
196 GAATAATTCTAAACCAATAAATAAATG
* ** *
7210797 TTAACGTAAAAATATGAGAATTATCGT-AAATT-GATAACATCAGA-ATAAAATGTGTTAGAA-T
1 TTAACGTAAAAATATGAGAATTATCGTAAAATTAG-TATCATTTGATATAAAATATGTTAGAAGT
* *
7210858 G-CTGTAACACCCTAAGATAG-AGTTGTGATAATT-TCAAACGTAATAAATG-TAAAAACAAGCA
65 GTC-GTAACACCCTAAGAGAGTAGTTGTGATAATTCT-AAACATAATAAA-GATAAAAACAAGCA
* * * *
7210919 TAAAAAAATATTATTATAACGTAAATAATTAAATTGATAACATAAAAAAATTGTTAGCC-TAAAC
127 TAAAAAGATATTATTATAACGTAAATAATTAAATTGACAACGTAAAAAAATTATTA-CCTTAAAC
* *
7210983 CCAATGAATAATTTTAAACCAATAAATAAATG
191 CCAAAGAATAATTCTAAACCAATAAATAAATG
* * * *
7211015 TTAACATAAAAATATGAGAATTATTGTAAAATT-GTTATCATTTGGTATAAAA-ATGTATTAAAA
1 TTAACGTAAAAATATGAGAATTATCGTAAAATTAG-TATCATTTGATATAAAATATG--TTAGAA
* * * * * *
7211078 TTGTTGTAACACCCTAAGAGAGT-GTTGTAACAATTCTAAA-AGTAATGATAG-TAAAAACAAGT
63 GTGTCGTAACACCCTAAGAGAGTAGTTGTGATAATTCTAAACA-TAAT-AAAGATAAAAACAAGC
* * *
7211140 GTAAAAAGATATTATTGA-AACATAAATAATTAAATTGACAACGTAAAAAAGTTATTACCTTAAA
126 ATAAAAAGATATTATT-ATAACGTAAATAATTAAATTGACAACGTAAAAAAATTATTACCTTAAA
*
7211204 CCCAAAGAATAATTATAAACCAATAAATAAATG
190 CCCAAAGAATAATTCTAAACCAATAAATAAATG
* * * * * *
7211237 TCAATGTAAAAATGTGAGAATTATCGTAAAATTGGTATCATTTGACATAAAATGTGTTAGAAGTG
1 TTAACGTAAAAATATGAGAATTATCGTAAAATTAGTATCATTTGATATAAAATATGTTAGAAGTG
* * * * * *
7211302 TTGTAATACCCTAAGAGA-TAGTAGTTATAATTCTAAAGATAATAAAGATAAGAACAAGCATAAA
66 TCGTAACACCCTAAGAGAGTAGTTGTGATAATTCTAAACATAATAAAGATAAAAACAAGCATAAA
* * *
7211366 AA-ATATTATTGTAACATAAATAATTAAATTGACAACGTAAAAAAATTATTATCTTAAACCCAAA
131 AAGATATTATTATAACGTAAATAATTAAATTGACAACGTAAAAAAATTATTACCTTAAACCCAAA
7211430 GAAT-ATGTCTAAACCAATAAATAAATG
196 GAATAAT-TCTAAACCAATAAATAAATG
* ** * * * * *
7211457 TTAATGTAAAAAGGTGA-AATTTATTGTAAAATTAGTATCATTT-AGCATAAAATGTGTTAAAAA
1 TTAACGTAAAAATATGAGAA-TTATCGTAAAATTAGTATCATTTGA-TATAAAATATGTTAGAAG
* *
7211520 TGTTGTAACACTCTAAGAGAGTA-TTGTGATA
64 TGTCGTAACACCCTAAGAGAGTAGTTGTGATA
7211551 CTCTAAAAAA
Statistics
Matches: 1021, Mismatches: 145, Indels: 61
0.83 0.12 0.05
Matches are distributed among these distances:
217 3 0.00
218 156 0.15
219 36 0.04
220 182 0.18
221 463 0.45
222 174 0.17
223 7 0.01
ACGTcount: A:0.48, C:0.09, G:0.12, T:0.31
Consensus pattern (222 bp):
TTAACGTAAAAATATGAGAATTATCGTAAAATTAGTATCATTTGATATAAAATATGTTAGAAGTG
TCGTAACACCCTAAGAGAGTAGTTGTGATAATTCTAAACATAATAAAGATAAAAACAAGCATAAA
AAGATATTATTATAACGTAAATAATTAAATTGACAACGTAAAAAAATTATTACCTTAAACCCAAA
GAATAATTCTAAACCAATAAATAAATG
Found at i:7210943 original size:21 final size:21
Alignment explanation
Indices: 7210917--7210969 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
7210907 TAAAAACAAG
*
7210917 CATAAAAAAATATTATT-ATAA
1 CATAAAAAAATA-AATTGATAA
* * *
7210938 CGTAAATAATTAAATTGATAA
1 CATAAAAAAATAAATTGATAA
7210959 CATAAAAAAAT
1 CATAAAAAAAT
7210970 TGTTAGCCTA
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
20 3 0.12
21 21 0.88
ACGTcount: A:0.60, C:0.06, G:0.04, T:0.30
Consensus pattern (21 bp):
CATAAAAAAATAAATTGATAA
Found at i:7211571 original size:21 final size:21
Alignment explanation
Indices: 7211529--7211571 Score: 50
Period size: 21 Copynumber: 2.0 Consensus size: 21
7211519 ATGTTGTAAC
* * *
7211529 ACTCTAAGAGAGTATTGTGAT
1 ACTCTAAAAAAGTATTGCGAT
*
7211550 ACTCTAAAAAAGTGTTGCGAT
1 ACTCTAAAAAAGTATTGCGAT
7211571 A
1 A
7211572 ATTCTAAACG
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (21 bp):
ACTCTAAAAAAGTATTGCGAT
Found at i:7211930 original size:220 final size:214
Alignment explanation
Indices: 7211568--7212158 Score: 550
Period size: 216 Copynumber: 2.7 Consensus size: 214
7211558 AAAGTGTTGC
* * * * *
7211568 GATAATTCTAAACGTAACG-AAGGTAAGAACAAGTGTAAAAAAATATTATTATAACGCAAATAAT
1 GATAATTCTAAACATAATGAAAAGTAA-AATAAGTGT--AAAAATATTATTATAACGTAAATAAT
* * * *
7211632 TAAATTGATAACGTAAAAAAAA-TATTATTACAAATAAAAAAATAATTTTAAACCAAAAAATAAA
63 TAAATTGGTAACGTAAAAAAAATTATTATTATAAAT--AAAAATAA-TTTAAACAAAAAAATATA
* ** ** *
7211696 AGTTAATGTAAAAAAGTGAAAATAATCATAAAACTAGTATTTTTTTTGAGTAAAATG-GTTACAA
125 TGTTAACATAAAAAAGTGAAAATAATCATAAAACTA--ATTTTTTTACA-TAAAATGTATTACAA
* *
7211760 GTATC-TTACACCTTAATAAAAACA-TTAT
187 ATATCATAACACCTTAA-AAAAA-AGTTAT
* *
7211788 GATAATTCTAAACATAATGAAAAGTAACAATAAGTGTGACAAAATATTATTAAAATGTAAATAAT
1 GATAATTCTAAACATAATGAAAAGTAA-AATAAGTGT-A-AAAATATTATTATAACGTAAATAAT
* * * *
7211853 TAAATTGGTAATGTAAAAAAAATTAGTATTATAAATAACAATAATCTTACACAAAAAAATATATG
63 TAAATTGGTAACGTAAAAAAAATTATTATTATAAATAAAAATAAT-TTAAACAAAAAAATATATG
* * *
7211918 TTAACATAAAAAAAT-AAGAATAATCATAAAATTAATTTTTTTACATAAAATGTATTAGAAATAT
127 TTAACATAAAAAAGTGAA-AATAATCATAAAACTAATTTTTTTACATAAAATGTATTACAAATAT
*
7211982 CATAATACCTTAAAAAAAAGTTAT
191 CATAACACCTTAAAAAAAAGTTAT
* * * * *
7212006 GATAATTTTAAATAT-ATTAAAAGGTAAAAGTAAGTGTAAAAGATACTATTATTACGT-AATAAT
1 GATAATTCTAAACATAATGAAAA-GTAAAA-TAAGTGTAAAA-ATATTATTATAACGTAAATAAT
* * * * * * * * *
7212069 GAAGTTAGCAACATAAAAAAAATAATTATTATAATTAAAAATGATTCTAAACAAAAAAATATGTG
63 TAAATTGGTAACGTAAAAAAAATTATTATTATAAATAAAAATAATT-TAAACAAAAAAATATATG
* *
7212134 TCAACATAAAAAATGTGAGAATAAT
127 TTAACATAAAAAA-GTGAAAATAAT
7212159 TGAAAAATTA
Statistics
Matches: 305, Mismatches: 52, Indels: 31
0.79 0.13 0.08
Matches are distributed among these distances:
215 1 0.00
216 71 0.23
217 35 0.11
218 52 0.17
219 12 0.04
220 67 0.22
221 56 0.18
222 11 0.04
ACGTcount: A:0.54, C:0.07, G:0.09, T:0.30
Consensus pattern (214 bp):
GATAATTCTAAACATAATGAAAAGTAAAATAAGTGTAAAAATATTATTATAACGTAAATAATTAA
ATTGGTAACGTAAAAAAAATTATTATTATAAATAAAAATAATTTAAACAAAAAAATATATGTTAA
CATAAAAAAGTGAAAATAATCATAAAACTAATTTTTTTACATAAAATGTATTACAAATATCATAA
CACCTTAAAAAAAAGTTAT
Found at i:7212487 original size:398 final size:397
Alignment explanation
Indices: 7211802--7212524 Score: 858
Period size: 400 Copynumber: 1.8 Consensus size: 397
7211792 ATTCTAAACA
* * * * *
7211802 TAATGAAAAGTAACAATAAGTGTGACAAAATATTATTAAAATGTAAATAATTAAATTGGTAATGT
1 TAATAAAAAGTAACAACAAGTGTGAAAAAATATTATTAAAATATAAATAATTAAATTAGTAATGT
* * * *
7211867 AAAAAAAATTAGTATTATAAATAACAATAATCTTACACAAAAAAATATATGTTAACATAAAAAAA
66 -AAAAAAATTAGTATTACAAATAAAAATAATCTTAAACAAAAAAATATAAGTTAACATAAAAAAA
*
7211932 TAAGAATAATCATAAAATTAATTTTTTTACATAAAATGTATTAGAAATATCATAATACCTTAAAA
130 TAAGAATAATCATAAAATTAATTATTTTACATAAAATG-ATTAGAAATATCATAATACCTTAAAA
* * * * * **
7211997 AAAAGTTATGATAATTTTAAATATATTAAAAGGTAAAAGTAAGTGTAAAAGATACTATTATTACG
194 AAAAGTTATAATAATTTTAAACATAATAAAAAGTAAAAGCAAACGTAAAAGATACTATTATTA-G
* * * * * *
7212062 TAATAATGAAGTTAGCAACATAAAAAAAATAATTATTATAATTAAAAATGATTCTAAACAAAAAA
258 TAATAATAAAATTAGCAACATAAAAAAAATAAGTATTACAAATAAAAATAATTCTAAACAAAAAA
7212127 ATATGTGTCAACATAAAAAATGTGAGAATAATTGAAAAATTAAAATCATTTAGTATGAAACATGT
323 ATATGTGTCAACATAAAAAATGTGAGAATAATTGAAAAATTAAAATCATTTAGTATGAAACATGT
7212192 TAAAATGTCT
388 TAAAATGTCT
* *
7212202 TAATAAAAAGTAACAACAAGTGT-AAAAAGATATTATTATAATATAAATAATTAAGTTAGTAATG
1 TAATAAAAAGTAACAACAAGTGTGAAAAA-ATATTATTAAAATATAAATAATTAAATTAGTAATG
* * *
7212266 T-TAAAAATTATTATTACAAATAAAAAATAATTTTAAAC-AAAAAATGA-AAGTTAACA-AAAAA
65 TAAAAAAATTAGTATTACAAAT-AAAAATAATCTTAAACAAAAAAAT-ATAAGTTAACATAAAAA
* * * *
7212327 CAATAAGAATAATCATAAAATTGATATTATTTTACGTAAAAT-AGTTATAAGTATCATTATACCT
128 -AATAAGAATAATCATAAAATT-A-ATTATTTTACATAAAATGA-TTAGAAATATCATAATACCT
*
7212391 TAACAAAAAAGGTTATAATAATTTTAAACGTAATAAAAAGTAACAA-CAAACGTAAAA-ATA-TA
189 TAA-AAAAAA-GTTATAATAATTTTAAACATAATAAAAAGTAA-AAGCAAACGTAAAAGATACTA
*** ** * *
7212453 TTATT-G-AA-ACATAAAAATTTTTAATGTAAAAAAAATTAGTATTACAAATAAAAATAATTTTA
251 TTATTAGTAATA-AT-AAAATTAGCAACATAAAAAAAATAAGTATTACAAATAAAAATAATTCTA
*
7212515 AATAAAAAAA
314 AACAAAAAAA
7212525 AGTGTTAAAG
Statistics
Matches: 270, Mismatches: 41, Indels: 27
0.80 0.12 0.08
Matches are distributed among these distances:
395 1 0.00
396 4 0.01
397 51 0.19
398 54 0.20
399 46 0.17
400 77 0.29
401 35 0.13
402 2 0.01
ACGTcount: A:0.55, C:0.06, G:0.08, T:0.31
Consensus pattern (397 bp):
TAATAAAAAGTAACAACAAGTGTGAAAAAATATTATTAAAATATAAATAATTAAATTAGTAATGT
AAAAAAATTAGTATTACAAATAAAAATAATCTTAAACAAAAAAATATAAGTTAACATAAAAAAAT
AAGAATAATCATAAAATTAATTATTTTACATAAAATGATTAGAAATATCATAATACCTTAAAAAA
AAGTTATAATAATTTTAAACATAATAAAAAGTAAAAGCAAACGTAAAAGATACTATTATTAGTAA
TAATAAAATTAGCAACATAAAAAAAATAAGTATTACAAATAAAAATAATTCTAAACAAAAAAATA
TGTGTCAACATAAAAAATGTGAGAATAATTGAAAAATTAAAATCATTTAGTATGAAACATGTTAA
AATGTCT
Found at i:7212532 original size:17 final size:16
Alignment explanation
Indices: 7212498--7212540 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
7212488 TTAGTATTAC
* *
7212498 AAATAAAAATAATTTT
1 AAATAAAAAAAATGTT
7212514 AAATAAAAAAAAGTGTT
1 AAATAAAAAAAA-TGTT
7212531 AAAGTAAAAA
1 AAA-TAAAAA
7212541 GATGAGAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 11 0.48
17 6 0.26
18 6 0.26
ACGTcount: A:0.67, C:0.00, G:0.07, T:0.26
Consensus pattern (16 bp):
AAATAAAAAAAATGTT
Found at i:7213220 original size:21 final size:19
Alignment explanation
Indices: 7213191--7213276 Score: 61
Period size: 20 Copynumber: 4.4 Consensus size: 19
7213181 TATTGTAACG
*
7213191 TAAATAATTAAATTAATAATA
1 TAAAAAATTAAATT-ATAA-A
* *
7213212 TAAAAAATTATTATTATAAG
1 TAAAAAATTA-AATTATAAA
*
7213232 TAAAAAA-T-AATTACAAA
1 TAAAAAATTAAATTATAAA
*
7213249 TCAAAAATTAAATGT-TAATA
1 TAAAAAATTAAAT-TATAA-A
7213269 TAAAAAAT
1 TAAAAAAT
7213277 AAAAATAACC
Statistics
Matches: 51, Mismatches: 9, Indels: 11
0.72 0.13 0.15
Matches are distributed among these distances:
17 12 0.24
18 1 0.02
19 6 0.12
20 16 0.31
21 13 0.25
22 3 0.06
ACGTcount: A:0.62, C:0.02, G:0.02, T:0.34
Consensus pattern (19 bp):
TAAAAAATTAAATTATAAA
Found at i:7213731 original size:10 final size:10
Alignment explanation
Indices: 7213716--7213741 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
7213706 TACTAAAAAT
7213716 AAAAAAGAAA
1 AAAAAAGAAA
7213726 AAAAAAGAAA
1 AAAAAAGAAA
7213736 AAAAAA
1 AAAAAA
7213742 AAAGTGGGTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAGAAA
Found at i:7213736 original size:17 final size:16
Alignment explanation
Indices: 7213710--7213744 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
7213700 GTCTCATACT
*
7213710 AAAAATAAAAAAGAAAA
1 AAAAAGAAAAAA-AAAA
7213727 AAAAAGAAAAAAAAAA
1 AAAAAGAAAAAAAAAA
7213743 AA
1 AA
7213745 GTGGGTCAGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.91, C:0.00, G:0.06, T:0.03
Consensus pattern (16 bp):
AAAAAGAAAAAAAAAA
Found at i:7216719 original size:20 final size:20
Alignment explanation
Indices: 7216671--7216721 Score: 68
Period size: 21 Copynumber: 2.5 Consensus size: 20
7216661 TGTTTTTTCA
*
7216671 TTTTTAATTTTTAATAAAAAT
1 TTTTTAATATTTAAT-AAAAT
7216692 TTTTTAATATTTAAT-AAAT
1 TTTTTAATATTTAATAAAAT
7216711 TTCTTTAATAT
1 TT-TTTAATAT
7216722 AAAGTCCATT
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
19 6 0.21
20 8 0.29
21 14 0.50
ACGTcount: A:0.39, C:0.02, G:0.00, T:0.59
Consensus pattern (20 bp):
TTTTTAATATTTAATAAAAT
Found at i:7216887 original size:22 final size:22
Alignment explanation
Indices: 7216862--7216915 Score: 56
Period size: 22 Copynumber: 2.5 Consensus size: 22
7216852 CTTTCTTCTA
**
7216862 TTTTATTTTTATTTTTGTTTTT
1 TTTTATTTTTATTTACGTTTTT
* *
7216884 TTTTACTTTTGTTTACGTTTTT
1 TTTTATTTTTATTTACGTTTTT
*
7216906 TCTT-TTTTTA
1 TTTTATTTTTA
7216916 ATAAAATCTT
Statistics
Matches: 25, Mismatches: 7, Indels: 1
0.76 0.21 0.03
Matches are distributed among these distances:
21 4 0.16
22 21 0.84
ACGTcount: A:0.09, C:0.06, G:0.06, T:0.80
Consensus pattern (22 bp):
TTTTATTTTTATTTACGTTTTT
Found at i:7216888 original size:16 final size:17
Alignment explanation
Indices: 7216862--7216897 Score: 56
Period size: 16 Copynumber: 2.2 Consensus size: 17
7216852 CTTTCTTCTA
*
7216862 TTTTATTTTTATTTTTG
1 TTTTATTTTTACTTTTG
7216879 TTTT-TTTTTACTTTTG
1 TTTTATTTTTACTTTTG
7216895 TTT
1 TTT
7216898 ACGTTTTTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.08, C:0.03, G:0.06, T:0.83
Consensus pattern (17 bp):
TTTTATTTTTACTTTTG
Found at i:7220092 original size:23 final size:23
Alignment explanation
Indices: 7220062--7220111 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
7220052 AATAAAAAAT
7220062 TATGCAGCTTTTATCTTGAAGCC
1 TATGCAGCTTTTATCTTGAAGCC
7220085 TATGCAGCTTTTATCTTGAAGCC
1 TATGCAGCTTTTATCTTGAAGCC
7220108 TATG
1 TATG
7220112 GTATAATAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.22, C:0.20, G:0.18, T:0.40
Consensus pattern (23 bp):
TATGCAGCTTTTATCTTGAAGCC
Found at i:7221554 original size:18 final size:18
Alignment explanation
Indices: 7221490--7221554 Score: 51
Period size: 18 Copynumber: 3.3 Consensus size: 18
7221480 ATAAATAAGT
*
7221490 AATTAAATAATATTATAT
1 AATTAAATAATATTATAA
*
7221508 AATATCAA-AATATTAGCTTAA
1 AAT-TAAATAATATTA---TAA
7221529 TTAATTAAATAATATTATAA
1 --AATTAAATAATATTATAA
7221549 AATTAA
1 AATTAA
7221555 TATTTAATAT
Statistics
Matches: 37, Mismatches: 3, Indels: 14
0.69 0.06 0.26
Matches are distributed among these distances:
18 16 0.43
19 3 0.08
20 3 0.08
21 2 0.05
22 3 0.08
23 10 0.27
ACGTcount: A:0.55, C:0.03, G:0.02, T:0.40
Consensus pattern (18 bp):
AATTAAATAATATTATAA
Found at i:7221723 original size:11 final size:11
Alignment explanation
Indices: 7221694--7221738 Score: 65
Period size: 11 Copynumber: 4.2 Consensus size: 11
7221684 AACATTAGTT
7221694 AAATAATATTA
1 AAATAATATTA
7221705 AAAT-ATATTA
1 AAATAATATTA
7221715 AAATAATATTA
1 AAATAATATTA
* *
7221726 AAGTAATGTTA
1 AAATAATATTA
7221737 AA
1 AA
7221739 TATTACTCCC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
10 10 0.32
11 21 0.68
ACGTcount: A:0.60, C:0.00, G:0.04, T:0.36
Consensus pattern (11 bp):
AAATAATATTA
Found at i:7221739 original size:21 final size:22
Alignment explanation
Indices: 7221691--7221740 Score: 68
Period size: 21 Copynumber: 2.4 Consensus size: 22
7221681 GATAACATTA
7221691 GTTAAATAATATTAAAATATAT
1 GTTAAATAATATTAAAATATAT
* *
7221713 -TAAAATAATATTAAAGTA-AT
1 GTTAAATAATATTAAAATATAT
7221733 GTTAAATA
1 GTTAAATA
7221741 TTACTCCCTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 2 0.08
21 22 0.92
ACGTcount: A:0.56, C:0.00, G:0.06, T:0.38
Consensus pattern (22 bp):
GTTAAATAATATTAAAATATAT
Found at i:7222064 original size:11 final size:10
Alignment explanation
Indices: 7222046--7222085 Score: 53
Period size: 11 Copynumber: 3.8 Consensus size: 10
7222036 TCAAAATTAC
7222046 TATTAAATAA
1 TATTAAATAA
*
7222056 TATTCAAATAT
1 TATT-AAATAA
7222067 TATTCAAATAA
1 TATT-AAATAA
7222078 TATTAAAT
1 TATTAAAT
7222086 TTCTAAAAAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
10 8 0.30
11 19 0.70
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (10 bp):
TATTAAATAA
Found at i:7222064 original size:22 final size:22
Alignment explanation
Indices: 7222039--7222086 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
7222029 AATCTTATCA
7222039 AAATTACTATT-AAATAATATT
1 AAATTACTATTCAAATAATATT
*
7222060 CAAA-TATTATTCAAATAATATT
1 -AAATTACTATTCAAATAATATT
7222082 AAATT
1 AAATT
7222087 TCTAAAAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 9 0.39
22 14 0.61
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (22 bp):
AAATTACTATTCAAATAATATT
Found at i:7222157 original size:30 final size:29
Alignment explanation
Indices: 7222105--7222317 Score: 90
Period size: 29 Copynumber: 7.5 Consensus size: 29
7222095 AATTAATGTC
*
7222105 TAATATTAAAATATT-TGAAAATCAATTAAA
1 TAATATTAAAATATTAT-TAAATC-ATTAAA
**
7222135 TAATATTAAAATATTATTAAATCATTATT
1 TAATATTAAAATATTATTAAATCATTAAA
* * *
7222164 TAATACTAAAATAATATT-AAT-AGTAAA
1 TAATATTAAAATATTATTAAATCATTAAA
* * * * *
7222191 TATTGTTTAATTCA-TATTTAAT-ATTAAA
1 TAATATTAAAAT-ATTATTAAATCATTAAA
* * * *
7222219 GTATTATTAAAATGAATATTCAAT-ACT---
1 -TAATATTAAAAT-ATTATTAAATCATTAAA
*
7222246 TAATATTAAAATATTATTAAGT-ATTAAAA
1 TAATATTAAAATATTATTAAATCATT-AAA
* * * *
7222275 TATTATT-AAATGAATATTTAAT-ATAAAA
1 TAATATTAAAAT-ATTATTAAATCATTAAA
*
7222303 TATTATTAAAATATT
1 TAATATTAAAATATT
7222318 TAATATTATT
Statistics
Matches: 141, Mismatches: 31, Indels: 24
0.72 0.16 0.12
Matches are distributed among these distances:
25 9 0.06
26 11 0.08
27 14 0.10
28 28 0.20
29 49 0.35
30 29 0.21
31 1 0.01
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.43
Consensus pattern (29 bp):
TAATATTAAAATATTATTAAATCATTAAA
Found at i:7222161 original size:11 final size:10
Alignment explanation
Indices: 7222129--7222456 Score: 86
Period size: 10 Copynumber: 31.7 Consensus size: 10
7222119 TTGAAAATCA
*
7222129 ATTAAATAAT
1 ATTAAATATT
7222139 ATTAAAATATT
1 ATT-AAATATT
7222150 ATTAAATCATT
1 ATTAAAT-ATT
* *
7222161 ATTTAATACT
1 ATTAAATATT
**
7222171 AAAATAATATT
1 ATTA-AATATT
7222182 AATAGTAAATATT
1 -AT--TAAATATT
* *
7222195 GTTTAAT-TCAT
1 ATTAAATAT--T
*
7222206 ATTTAATATT
1 ATTAAATATT
*
7222216 A--AAGTATT
1 ATTAAATATT
*
7222224 ATTAAAATGAAT
1 ATT-AAAT-ATT
*
7222236 ATTCAATACTT
1 ATTAAATA-TT
7222247 AATATTAAAATATT
1 -AT-T-AAA-TATT
*
7222261 ATTAAGTATT
1 ATTAAATATT
7222271 A--AAATATT
1 ATTAAATATT
*
7222279 ATTAAATGAAT
1 ATTAAAT-ATT
*
7222290 ATTTAATA-T
1 ATTAAATATT
7222299 A--AAATATT
1 ATTAAATATT
7222307 ATTAAA-A-T
1 ATTAAATATT
*
7222315 ATTTAATATT
1 ATTAAATATT
*
7222325 ATTTAAT-TCAT
1 ATTAAATAT--T
* *
7222336 ATTTAATATG
1 ATTAAATATT
7222346 ATTAAATTTATT
1 ATTAAA--TATT
* *
7222358 ATTTAATATG
1 ATTAAATATT
*
7222368 ATTAAATTAAT
1 ATTAAA-TATT
*
7222379 ATTTAATATT
1 ATTAAATATT
* * *
7222389 GTTCAATAAT
1 ATTAAATATT
* *
7222399 ATTTAGTATT
1 ATTAAATATT
*
7222409 ATTGAATATT
1 ATTAAATATT
7222419 AGTT-AATATT
1 A-TTAAATATT
*
7222429 ATTAAATTAAT
1 ATTAAA-TATT
* *
7222440 ATTTAATAAT
1 ATTAAATATT
7222450 ATTAAAT
1 ATTAAAT
7222457 TAATGTTGAA
Statistics
Matches: 236, Mismatches: 47, Indels: 70
0.67 0.13 0.20
Matches are distributed among these distances:
7 4 0.02
8 21 0.09
9 8 0.03
10 95 0.40
11 72 0.31
12 20 0.08
13 9 0.04
14 5 0.02
15 2 0.01
ACGTcount: A:0.47, C:0.02, G:0.04, T:0.47
Consensus pattern (10 bp):
ATTAAATATT
Found at i:7222209 original size:45 final size:45
Alignment explanation
Indices: 7222143--7222228 Score: 111
Period size: 45 Copynumber: 1.9 Consensus size: 45
7222133 AATAATATTA
7222143 AAATATTATTAAATCATTATTTAATACTAAAATAATATTAATAGT
1 AAATATTATTAAATCATTATTTAATACTAAAATAATATTAATAGT
* * * * *
7222188 AAATATTGTTTAATTCA-TATTTAATATTAAAGTATTATTAA
1 AAATATT-ATTAAATCATTATTTAATACTAAAATAATATTAA
7222229 AATGAATATT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
45 28 0.80
46 7 0.20
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (45 bp):
AAATATTATTAAATCATTATTTAATACTAAAATAATATTAATAGT
Found at i:7222272 original size:18 final size:17
Alignment explanation
Indices: 7222208--7222311 Score: 76
Period size: 18 Copynumber: 6.2 Consensus size: 17
7222198 TAATTCATAT
*
7222208 TTAATATTAAAGTATTA
1 TTAATATTAAAATATTA
* * * *
7222225 TTAAAATGAATATTCAATA
1 TTAATATTAA-AAT-ATTA
7222244 CTTAATATTAAAATATTA
1 -TTAATATTAAAATATTA
7222262 TTAAGTATTAAAATATTA
1 TTAA-TATTAAAATATTA
*
7222280 TTAA-A-T-GAATA-T-
1 TTAATATTAAAATATTA
7222292 TTAATA-TAAAATATTA
1 TTAATATTAAAATATTA
7222308 TTAA
1 TTAA
7222312 AATATTTAAT
Statistics
Matches: 69, Mismatches: 10, Indels: 17
0.72 0.10 0.18
Matches are distributed among these distances:
12 4 0.06
13 3 0.04
14 8 0.12
15 2 0.03
16 5 0.07
17 12 0.17
18 22 0.32
19 5 0.07
20 8 0.12
ACGTcount: A:0.51, C:0.02, G:0.04, T:0.43
Consensus pattern (17 bp):
TTAATATTAAAATATTA
Found at i:7222285 original size:10 final size:10
Alignment explanation
Indices: 7222249--7222456 Score: 92
Period size: 10 Copynumber: 20.8 Consensus size: 10
7222239 CAATACTTAA
7222249 TATTAAAATAT
1 TATT-AAATAT
*
7222260 TATTAAGTAT
1 TATTAAATAT
7222270 TA--AAATAT
1 TATTAAATAT
*
7222278 TATTAAATGAA
1 TATTAAAT-AT
*
7222289 TATTTAATA-
1 TATTAAATAT
7222298 TA--AAATAT
1 TATTAAATAT
7222306 TATTAAA-A-
1 TATTAAATAT
*
7222314 TATTTAATAT
1 TATTAAATAT
*
7222324 TATTTAAT-T
1 TATTAAATAT
*
7222333 CATATTTAATAT
1 --TATTAAATAT
*
7222345 GATTAAATTTAT
1 TATTAAA--TAT
*
7222357 TATTTAATAT
1 TATTAAATAT
* *
7222367 GATTAAATTAA
1 TATTAAA-TAT
*
7222378 TATTTAATAT
1 TATTAAATAT
* * *
7222388 TGTTCAATAA
1 TATTAAATAT
* *
7222398 TATTTAGTAT
1 TATTAAATAT
*
7222408 TATTGAATAT
1 TATTAAATAT
7222418 TAGTT-AATAT
1 TA-TTAAATAT
*
7222428 TATTAAATTAA
1 TATTAAA-TAT
* *
7222439 TATTTAATAA
1 TATTAAATAT
7222449 TATTAAAT
1 TATTAAAT
7222457 TAATGTTGAA
Statistics
Matches: 152, Mismatches: 28, Indels: 35
0.71 0.13 0.16
Matches are distributed among these distances:
7 4 0.03
8 15 0.10
9 7 0.05
10 80 0.53
11 37 0.24
12 9 0.06
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (10 bp):
TATTAAATAT
Found at i:7222297 original size:21 final size:21
Alignment explanation
Indices: 7222273--7222546 Score: 248
Period size: 21 Copynumber: 13.0 Consensus size: 21
7222263 TAAGTATTAA
*
7222273 AATATTATTAAATGAATATTT
1 AATATTATTAAATTAATATTT
* * *
7222294 AATATAAAATATTATTAAAATATTT
1 AATAT-TATTA-AATT--AATATTT
* *
7222319 AATATTATTTAATTCATATTT
1 AATATTATTAAATTAATATTT
* *
7222340 AATATGATTAAATTTATTATTT
1 AATATTATTAAA-TTAATATTT
*
7222362 AATATGATTAAATTAATATTT
1 AATATTATTAAATTAATATTT
* *
7222383 AATATTGTTCAA-TAATATTT
1 AATATTATTAAATTAATATTT
* * * *
7222403 AGTATTATTGAA-TATTAGTT
1 AATATTATTAAATTAATATTT
7222423 AATATTATTAAATTAATATTT
1 AATATTATTAAATTAATATTT
* * *
7222444 AATAATATTAAATTAATGTTG
1 AATATTATTAAATTAATATTT
* *
7222465 AATATTACTAAATTAATATTG
1 AATATTATTAAATTAATATTT
* *
7222486 ATTATTATT-AATTAGTATTT
1 AATATTATTAAATTAATATTT
* *
7222506 AATATGATCAAATTAATATTT
1 AATATTATTAAATTAATATTT
* *
7222527 AATTTTATGAAATTAATATT
1 AATATTATTAAATTAATATT
7222547 AATTGAAATA
Statistics
Matches: 203, Mismatches: 43, Indels: 14
0.78 0.17 0.05
Matches are distributed among these distances:
20 48 0.24
21 114 0.56
22 22 0.11
23 5 0.02
24 2 0.01
25 12 0.06
ACGTcount: A:0.45, C:0.01, G:0.05, T:0.49
Consensus pattern (21 bp):
AATATTATTAAATTAATATTT
Found at i:7222298 original size:84 final size:81
Alignment explanation
Indices: 7222163--7222314 Score: 205
Period size: 84 Copynumber: 1.8 Consensus size: 81
7222153 AAATCATTAT
* * ** *
7222163 TTAATACTAAAATAATATTAATAGTAAATATTGTTTAATTCATATTTAATATTAAAGTATTATTA
1 TTAATACTAAAATAATATTAATAGTAAATATTATTAAATGAATATTTAATA-TAAAATATTATTA
7222228 AAATGAATATTCAATAC
65 AAATGAATATTCAATAC
* * *
7222245 TTAATATTAAAATATTATTAAGTATTAAAATATTATTAAATGAATATTTAATATAAAATATTATT
1 TTAATACTAAAATAATATTAA-TAGT-AAATATTATTAAATGAATATTTAATATAAAATATTATT
7222310 AAAAT
64 AAAAT
7222315 ATTTAATATT
Statistics
Matches: 60, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
82 19 0.32
83 19 0.32
84 22 0.37
ACGTcount: A:0.50, C:0.03, G:0.04, T:0.43
Consensus pattern (81 bp):
TTAATACTAAAATAATATTAATAGTAAATATTATTAAATGAATATTTAATATAAAATATTATTAA
AATGAATATTCAATAC
Found at i:7222323 original size:46 final size:45
Alignment explanation
Indices: 7222240--7222387 Score: 147
Period size: 46 Copynumber: 3.3 Consensus size: 45
7222230 ATGAATATTC
* * * *
7222240 AATACTTAATATTAAAATATTATTAAGTATTAAAATATTATTAAATG
1 AATATTTAATA-TAAAATATTATTAAATATT-TAATATTATTAAATT
*
7222287 AATATTTAATATAAAATATTATTAAAATATTTAATATTATTTAATT
1 AATATTTAATATAAAATATTATT-AAATATTTAATATTATTAAATT
* * * * * * *
7222333 CATATTTAATAT-GATTA-AATTTATTATTTAATATGATTAAATT
1 AATATTTAATATAAAATATTATTAAATATTTAATATTATTAAATT
7222376 AATATTTAATAT
1 AATATTTAATAT
7222388 TGTTCAATAA
Statistics
Matches: 86, Mismatches: 14, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
43 29 0.34
44 3 0.03
45 3 0.03
46 35 0.41
47 16 0.19
ACGTcount: A:0.48, C:0.01, G:0.03, T:0.48
Consensus pattern (45 bp):
AATATTTAATATAAAATATTATTAAATATTTAATATTATTAAATT
Found at i:7222325 original size:54 final size:52
Alignment explanation
Indices: 7222204--7222325 Score: 140
Period size: 54 Copynumber: 2.2 Consensus size: 52
7222194 TGTTTAATTC
*
7222204 ATATTTAATATTAAAGTATTATTAAAATGAATATTCAATACTTAATATTAAA
1 ATATTTAATATTAAAATATTATTAAAATGAATATTCAATACTTAATATTAAA
* *
7222256 ATATTATTAAGTATTAAAATATTATT-AAATGAATATTTAATA-TAAAATATTATTAAA
1 ATA-T-TTAA-TATTAAAATATTATTAAAATGAATATTCAATACT----TAATATTAAA
7222313 ATATTTAATATTA
1 ATATTTAATATTA
7222326 TTTAATTCAT
Statistics
Matches: 60, Mismatches: 3, Indels: 12
0.80 0.04 0.16
Matches are distributed among these distances:
52 3 0.05
53 2 0.03
54 24 0.40
55 18 0.30
56 1 0.02
57 12 0.20
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (52 bp):
ATATTTAATATTAAAATATTATTAAAATGAATATTCAATACTTAATATTAAA
Found at i:7222419 original size:61 final size:63
Alignment explanation
Indices: 7222312--7222529 Score: 203
Period size: 62 Copynumber: 3.5 Consensus size: 63
7222302 ATATTATTAA
* * *
7222312 AATATTTAATATTATTTAATTCATATTTAATATGATTAAATTTATTATTTAATATGATTAAATT
1 AATATTTAATATTATTCAATTAATATTTAATATGATTAAA-TTATTAGTTAATATGATTAAATT
* * * * *
7222376 AATATTTAATATTGTTCAA-TAATATTTAGTATTATTGAA-TATTAGTTAATATTATTAAATT
1 AATATTTAATATTATTCAATTAATATTTAATATGATTAAATTATTAGTTAATATGATTAAATT
* * * * * * * * *
7222437 AATATTTAATAATATTAAATTAATGTTGAATATTACTAAATTAATA-TTGATTATTATT-AATT
1 AATATTTAATATTATTCAATTAATATTTAATATGATTAAATTATTAGTT-AATATGATTAAATT
* *
7222499 AGTATTTAATATGA-TCAAATTAATATTTAAT
1 AATATTTAATATTATTC-AATTAATATTTAAT
7222530 TTTATGAAAT
Statistics
Matches: 126, Mismatches: 24, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
61 37 0.29
62 44 0.35
63 28 0.22
64 17 0.13
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (63 bp):
AATATTTAATATTATTCAATTAATATTTAATATGATTAAATTATTAGTTAATATGATTAAATT
Found at i:7222492 original size:83 final size:81
Alignment explanation
Indices: 7222312--7222546 Score: 231
Period size: 83 Copynumber: 2.8 Consensus size: 81
7222302 ATATTATTAA
* * * *
7222312 AATATTTAATATTATTTAATTCA-TATTTAATATGATTAAATTTATTATTTAATATGATTAAATT
1 AATATTGAGTATTA-TTAATT-AGTAGTTAATATGATTAAA-TTAATATTTAATAT-ATTAAATT
* ** *
7222376 AATATTTAATATTGTTCAAT
62 AATATTGAATATTACTAAAT
* * *
7222396 AATATTTAGTATTATTGAA-TATTAGTTAATATTATTAAATTAATATTTAATAATATTAAATTAA
1 AATATTGAGTATTATT-AATTAGTAGTTAATATGATTAAATTAATATTTAAT-ATATTAAATTAA
*
7222460 TGTTGAATATTACTAAATT
64 TATTGAATATTACTAAA-T
* * * * *
7222479 AATATTGATTATTATTAATTAGTATTTAATATGATCAAATTAATATTTAATTTTATGAAATTAAT
1 AATATTGAGTATTATTAATTAGTAGTTAATATGATTAAATTAATATTTAA-TATATTAAATTAAT
7222544 ATT
65 ATT
7222547 AATTGAAATA
Statistics
Matches: 127, Mismatches: 18, Indels: 13
0.80 0.11 0.08
Matches are distributed among these distances:
82 36 0.28
83 75 0.59
84 16 0.13
ACGTcount: A:0.43, C:0.02, G:0.05, T:0.50
Consensus pattern (81 bp):
AATATTGAGTATTATTAATTAGTAGTTAATATGATTAAATTAATATTTAATATATTAAATTAATA
TTGAATATTACTAAAT
Found at i:7223189 original size:18 final size:19
Alignment explanation
Indices: 7223158--7223194 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
7223148 AAACTACATT
7223158 CCTAGCACATGATTAAACA
1 CCTAGCACATGATTAAACA
*
7223177 CCTAGCA-ATGATTGAACA
1 CCTAGCACATGATTAAACA
7223195 TATAGAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.41, C:0.24, G:0.14, T:0.22
Consensus pattern (19 bp):
CCTAGCACATGATTAAACA
Found at i:7223802 original size:63 final size:64
Alignment explanation
Indices: 7223729--7223849 Score: 208
Period size: 64 Copynumber: 1.9 Consensus size: 64
7223719 AAAGTAGTGC
** *
7223729 TTGATAAATAT-AAAATTTTTTATGTCAATAAATTGTAGTAATTAATTATCTAAAACTTATTGT
1 TTGATAAATATAAAAAAATTTTATGTCAATAAATTGTAATAATTAATTATCTAAAACTTATTGT
7223792 TTGATAAATATAAAAAAATTTTATGTCAATAAATTGTAATAATTAATTATCTAAAACT
1 TTGATAAATATAAAAAAATTTTATGTCAATAAATTGTAATAATTAATTATCTAAAACT
7223850 GATAATGTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
63 11 0.20
64 43 0.80
ACGTcount: A:0.45, C:0.05, G:0.07, T:0.43
Consensus pattern (64 bp):
TTGATAAATATAAAAAAATTTTATGTCAATAAATTGTAATAATTAATTATCTAAAACTTATTGT
Found at i:7224126 original size:115 final size:113
Alignment explanation
Indices: 7223856--7224175 Score: 336
Period size: 115 Copynumber: 2.8 Consensus size: 113
7223846 AACTGATAAT
*
7223856 GTTTCTAAAATAGAAAATACAATTTTTGTTGAAAACAT-AAAAAAATATTTTTCATAATTCAATA
1 GTTTCTAAGATA-AAAATACAATTTTTGTTGAAAACATGAAAAAAATATTTTTCATAATTCAAT-
* * * * * * * *
7223920 AAAGACGATATTTTTCATATAGAAAACGCAGTCTTTGTTGAAAAGATGAC
64 AAAGATGATGTTTCTAAGATAGAAAACACAGTCTTTATTGAAAAAATGAC
* * * * * **
7223970 GTTTCTAAGATAAAAATATAATATTTGTTAAAAAAATGAAAAATATATTTTTCATGTTTCAATAA
1 GTTTCTAAGATAAAAATACAATTTTTGTTGAAAACATGAAAAAAATATTTTTCATAATTCAATAA
** * * *
7224035 AGATGATGTTTCTAAGATAGTCAACATAGTTTTTATTGAAAAAAATGAT
66 AGATGATGTTTCTAAGATAGAAAACACAGTCTTTATTG-AAAAAATGAC
* * * * *
7224084 GTTTTCTAAGATAAAAATGCAGTTTTTTTTGAAAACATGAAAAAAATATATTTCAAAATTCAATA
1 G-TTTCTAAGATAAAAATACAATTTTTGTTGAAAACATGAAAAAAATATTTTTCATAATTCAATA
* *
7224149 AAGATAATGTTTTCTAAGATAAAAAAC
65 AAGATGATG-TTTCTAAGATAGAAAAC
7224176 GTAATTTTAG
Statistics
Matches: 165, Mismatches: 37, Indels: 6
0.79 0.18 0.03
Matches are distributed among these distances:
113 50 0.30
114 42 0.25
115 59 0.36
116 14 0.08
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (113 bp):
GTTTCTAAGATAAAAATACAATTTTTGTTGAAAACATGAAAAAAATATTTTTCATAATTCAATAA
AGATGATGTTTCTAAGATAGAAAACACAGTCTTTATTGAAAAAATGAC
Found at i:7224206 original size:73 final size:74
Alignment explanation
Indices: 7224082--7224228 Score: 174
Period size: 73 Copynumber: 2.0 Consensus size: 74
7224072 GAAAAAAATG
* * ** *
7224082 ATGTTTTCTAAGATAAAAATGCAGTTTTTTTTGAAAACATGAAAAAAATATA-TTTCAAAAT-TC
1 ATGTTTTCTAAGATAAAAACGCAATTTTAGTTAAAAACATGAAAAAAATATATTTTCAAAATCT-
7224145 AATAAAGATA
65 AATAAAGATA
* * *
7224155 ATGTTTTCTAAGATAAAAAACGTAATTTTAGTTAAAAATAT-AAAAATATATATTTTTCAAAATC
1 ATGTTTTCTAAGAT-AAAAACGCAATTTTAGTTAAAAACATGAAAAAAATATA-TTTTCAAAATC
7224219 TAATAAAGAT
64 TAATAAAGAT
7224229 GATTTTCTAA
Statistics
Matches: 62, Mismatches: 8, Indels: 6
0.82 0.11 0.08
Matches are distributed among these distances:
73 24 0.39
74 19 0.31
75 18 0.29
76 1 0.02
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.37
Consensus pattern (74 bp):
ATGTTTTCTAAGATAAAAACGCAATTTTAGTTAAAAACATGAAAAAAATATATTTTCAAAATCTA
ATAAAGATA
Found at i:7224321 original size:37 final size:37
Alignment explanation
Indices: 7224280--7224358 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
7224270 ATTTAAAAAA
* * *
7224280 AAAATGTAAAATATCTTAATTTAATATTATTACATAT
1 AAAATGTAAAATATATTAACTTAATATTATTACACAT
* *
7224317 AAAATTTAAAATATATTTACTTAATATTATTACACAT
1 AAAATGTAAAATATATTAACTTAATATTATTACACAT
7224354 AAAAT
1 AAAAT
7224359 CTTTTTACGA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.51, C:0.06, G:0.01, T:0.42
Consensus pattern (37 bp):
AAAATGTAAAATATATTAACTTAATATTATTACACAT
Found at i:7228754 original size:22 final size:22
Alignment explanation
Indices: 7228700--7228754 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
7228690 ATTTTTTTTC
*
7228700 TTTTTTGATATTTAATAAATAT
1 TTTTTTGATATTTAATAAAAAT
* *
7228722 TTTTGTGATATTTTATAAAAAT
1 TTTTTTGATATTTAATAAAAAT
*
7228744 TTTTTTAATAT
1 TTTTTTGATAT
7228755 GGAATCTATT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (22 bp):
TTTTTTGATATTTAATAAAAAT
Found at i:7229118 original size:13 final size:12
Alignment explanation
Indices: 7229096--7229126 Score: 53
Period size: 13 Copynumber: 2.5 Consensus size: 12
7229086 CTCAATGAAG
7229096 TTTTTTTTTATT
1 TTTTTTTTTATT
7229108 TTTTGTTTTTATT
1 TTTT-TTTTTATT
7229121 TTTTTT
1 TTTTTT
7229127 ATTAAATTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.06, C:0.00, G:0.03, T:0.90
Consensus pattern (12 bp):
TTTTTTTTTATT
Found at i:7231340 original size:38 final size:39
Alignment explanation
Indices: 7231276--7231349 Score: 98
Period size: 38 Copynumber: 1.9 Consensus size: 39
7231266 TATGTATATA
**
7231276 TATATATATATAATTATATTTTTAAAA-TATTTATTTTTT
1 TATATATATATAATTATATTAATAAAACT-TTTATTTTTT
*
7231315 TATATTTATAT-ATTATATTAATAAAACTTTTATTT
1 TATATATATATAATTATATTAATAAAACTTTTATTT
7231350 ATTATTTTAA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
38 20 0.65
39 11 0.35
ACGTcount: A:0.39, C:0.01, G:0.00, T:0.59
Consensus pattern (39 bp):
TATATATATATAATTATATTAATAAAACTTTTATTTTTT
Found at i:7231389 original size:29 final size:28
Alignment explanation
Indices: 7231314--7231390 Score: 73
Period size: 29 Copynumber: 2.6 Consensus size: 28
7231304 ATTTATTTTT
* * *
7231314 TTATATTTATATATTATATTAATAAAACTT
1 TTATATTTAT-TATAAT-TTAATAAAAATA
* *
7231344 TTATTTATTATTTTAATTTAATAAAAATA
1 TTATAT-TTATTATAATTTAATAAAAATA
7231373 TTATATTTATTCATAATT
1 TTATATTTATT-ATAATT
7231391 AAAATATAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
28 5 0.13
29 20 0.53
30 9 0.24
31 4 0.11
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.56
Consensus pattern (28 bp):
TTATATTTATTATAATTTAATAAAAATA
Found at i:7231492 original size:2 final size:2
Alignment explanation
Indices: 7231480--7231511 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
7231470 TGTATCACTT
*
7231480 TA TA AA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
7231512 CCTTTTTTTC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
TA
Found at i:7241260 original size:17 final size:16
Alignment explanation
Indices: 7241238--7241286 Score: 66
Period size: 14 Copynumber: 3.1 Consensus size: 16
7241228 TTTTATTTAT
7241238 ATTATTATATTAATAAA
1 ATTATTAT-TTAATAAA
*
7241255 ATTATTATTTAAT-AC
1 ATTATTATTTAATAAA
7241270 ATT-TTATTTAATAAA
1 ATTATTATTTAATAAA
7241285 AT
1 AT
7241287 AATATATTTG
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
14 9 0.31
15 7 0.24
16 5 0.17
17 8 0.28
ACGTcount: A:0.47, C:0.02, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTATTATTTAATAAA
Found at i:7248624 original size:15 final size:15
Alignment explanation
Indices: 7248598--7248640 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 15
7248588 TTGAAATAAA
7248598 ATATTAA-ATATATATT
1 ATATTAATATA-ATA-T
7248614 ATATTAATATAATAT
1 ATATTAATATAATAT
*
7248629 ATATAAATATAA
1 ATATTAATATAA
7248641 ATTTAATAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
15 12 0.48
16 10 0.40
17 3 0.12
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (15 bp):
ATATTAATATAATAT
Found at i:7251334 original size:12 final size:13
Alignment explanation
Indices: 7251315--7251347 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
7251305 ATCATATTTG
7251315 ATAT-ATAAAATA
1 ATATAATAAAATA
7251327 ATA-AATAAAATA
1 ATATAATAAAATA
7251339 ATATAATAA
1 ATATAATAA
7251348 TTATTTTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 14 0.74
13 5 0.26
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (13 bp):
ATATAATAAAATA
Found at i:7259367 original size:12 final size:12
Alignment explanation
Indices: 7259335--7259359 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
7259325 TAAGTATTTC
7259335 AATAAATTTATA
1 AATAAATTTATA
7259347 AATAAATTTATA
1 AATAAATTTATA
7259359 A
1 A
7259360 CTTAATTTTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (12 bp):
AATAAATTTATA
Found at i:7262120 original size:19 final size:21
Alignment explanation
Indices: 7262096--7262135 Score: 57
Period size: 19 Copynumber: 2.0 Consensus size: 21
7262086 CCCAAAAATG
7262096 TCTTAACTC-TTTT-TTTTTT
1 TCTTAACTCATTTTATTTTTT
*
7262115 TCTTAATTCATTTTATTTTTT
1 TCTTAACTCATTTTATTTTTT
7262136 ATTACATAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 8 0.44
20 4 0.22
21 6 0.33
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.72
Consensus pattern (21 bp):
TCTTAACTCATTTTATTTTTT
Found at i:7262133 original size:20 final size:19
Alignment explanation
Indices: 7262096--7262135 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
7262086 CCCAAAAATG
*
7262096 TCTTAACTCTTTTTTTTTT
1 TCTTAACTCTTTTATTTTT
*
7262115 TCTTAATTCATTTTATTTTT
1 TCTTAACTC-TTTTATTTTT
7262135 T
1 T
7262136 ATTACATAAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 8 0.44
20 10 0.56
ACGTcount: A:0.15, C:0.12, G:0.00, T:0.72
Consensus pattern (19 bp):
TCTTAACTCTTTTATTTTT
Found at i:7262187 original size:31 final size:31
Alignment explanation
Indices: 7262129--7262192 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 31
7262119 AATTCATTTT
* * *
7262129 ATTTTTTATTACATAATAAATTGATAAAAAA
1 ATTTATTATTACATAATAAACTAATAAAAAA
* * *
7262160 ATTTATTATTATATAGTAAACTAATAAATAA
1 ATTTATTATTACATAATAAACTAATAAAAAA
7262191 AT
1 AT
7262193 AAATTTTGTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.03, T:0.42
Consensus pattern (31 bp):
ATTTATTATTACATAATAAACTAATAAAAAA
Found at i:7263195 original size:29 final size:30
Alignment explanation
Indices: 7263128--7263199 Score: 78
Period size: 29 Copynumber: 2.5 Consensus size: 30
7263118 TTTAATTATA
* *
7263128 ATAAATGTAATAATTTTATTAAATTTAGAT
1 ATAAATATAATAATTTTATTAAATTAAGAT
* * *
7263158 ATTAA-ATAATAATTTTATTATA-TAATAT
1 ATAAATATAATAATTTTATTAAATTAAGAT
7263186 ATAAATATAA-AATT
1 ATAAATATAATAATT
7263200 AAATAATAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
28 12 0.34
29 19 0.54
30 4 0.11
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (30 bp):
ATAAATATAATAATTTTATTAAATTAAGAT
Found at i:7270348 original size:6 final size:6
Alignment explanation
Indices: 7270315--7270407 Score: 57
Period size: 6 Copynumber: 15.5 Consensus size: 6
7270305 GGTAAGTCTA
* *
7270315 TTTT-T TTTTATT TTTGTAT TTTACAT TTTTA- TTTTAT TTTTAT TTCTAT
1 TTTTAT TTTTA-T TTT-TAT TTT-TAT TTTTAT TTTTAT TTTTAT TTTTAT
* * ** * * *
7270364 TATTAT TATTGG TTTTAT ATATAT TTTT-C TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT
7270408 ATGTATTTAT
Statistics
Matches: 66, Mismatches: 17, Indels: 9
0.72 0.18 0.10
Matches are distributed among these distances:
5 13 0.20
6 38 0.58
7 13 0.20
8 2 0.03
ACGTcount: A:0.18, C:0.03, G:0.03, T:0.75
Consensus pattern (6 bp):
TTTTAT
Found at i:7271081 original size:19 final size:19
Alignment explanation
Indices: 7271054--7271093 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
7271044 TTTGATGAAC
*
7271054 TTTCGACGAAAAACCCAGA
1 TTTCAACGAAAAACCCAGA
*
7271073 TTTCAACGAAAAACTCAGA
1 TTTCAACGAAAAACCCAGA
7271092 TT
1 TT
7271094 CCGGTGAATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.23, G:0.12, T:0.23
Consensus pattern (19 bp):
TTTCAACGAAAAACCCAGA
Found at i:7271497 original size:21 final size:21
Alignment explanation
Indices: 7271473--7271517 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
7271463 TTAGATTAGG
7271473 TTTATTTAATATTT-TTTTATC
1 TTTATTTAATATTTGTTTTA-C
* *
7271494 TTTATTTTATTTTTGTTTTAC
1 TTTATTTAATATTTGTTTTAC
7271515 TTT
1 TTT
7271518 TCTTTATTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
21 16 0.76
22 5 0.24
ACGTcount: A:0.18, C:0.04, G:0.02, T:0.76
Consensus pattern (21 bp):
TTTATTTAATATTTGTTTTAC
Found at i:7271526 original size:40 final size:41
Alignment explanation
Indices: 7271482--7271572 Score: 109
Period size: 40 Copynumber: 2.3 Consensus size: 41
7271472 GTTTATTTAA
**
7271482 TATTTTTTTATCT-TTATTTTATTTT-TGTTTTACTTTT-CTT
1 TATTTTTTTATCTATT-TTTTATTTTCACTTTTA-TTTTGCTT
7271522 TATTTTTTT-TCTATTTTTTATTTTCACTTTTATTTTGCTT
1 TATTTTTTTATCTATTTTTTATTTTCACTTTTATTTTGCTT
*
7271562 TATTATTTTAT
1 TATTTTTTTAT
7271573 TTTCTTTAAA
Statistics
Matches: 44, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
39 16 0.36
40 27 0.61
41 1 0.02
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.76
Consensus pattern (41 bp):
TATTTTTTTATCTATTTTTTATTTTCACTTTTATTTTGCTT
Found at i:7271552 original size:13 final size:12
Alignment explanation
Indices: 7271494--7271575 Score: 52
Period size: 12 Copynumber: 7.2 Consensus size: 12
7271484 TTTTTTTATC
7271494 TTTATTTTA-TT
1 TTTATTTTACTT
*
7271505 TTTGTTTTAC-T
1 TTTATTTTACTT
*
7271516 TTT-CTTTA-TT
1 TTTATTTTACTT
*
7271526 TTT-TTTCTATTT
1 TTTATTT-TACTT
7271538 TTTATTTTCAC-T
1 TTTATTTT-ACTT
*
7271550 TTTATTTTGCTT
1 TTTATTTTACTT
7271562 TATTATTTTA-TT
1 T-TTATTTTACTT
7271574 TT
1 TT
7271576 CTTTAAATAA
Statistics
Matches: 57, Mismatches: 6, Indels: 16
0.72 0.08 0.20
Matches are distributed among these distances:
10 10 0.18
11 16 0.28
12 20 0.35
13 11 0.19
ACGTcount: A:0.13, C:0.07, G:0.02, T:0.77
Consensus pattern (12 bp):
TTTATTTTACTT
Found at i:7271770 original size:56 final size:56
Alignment explanation
Indices: 7271666--7271772 Score: 153
Period size: 56 Copynumber: 1.9 Consensus size: 56
7271656 AAAAGGTTTT
* *
7271666 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAGATAAATTTTCAAAGGGGA
1 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTGAAAGATAAAGTTTCAAAGGGGA
* * *
7271722 TTTTGAGGAAAAGTTGAAAGTATTAATTTTTCTCGAAA-TTAAAGTTTCAAA
1 TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT-GAAAGATAAAGTTTCAAA
7271773 AGAATATTTT
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
56 42 0.93
57 3 0.07
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (56 bp):
TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTGAAAGATAAAGTTTCAAAGGGGA
Found at i:7282200 original size:10 final size:9
Alignment explanation
Indices: 7282187--7282247 Score: 83
Period size: 9 Copynumber: 6.9 Consensus size: 9
7282177 ACTATGTTTG
7282187 AAAAAAAAT
1 AAAAAAAAT
7282196 GAAAAAAAAT
1 -AAAAAAAAT
7282206 --AAAAAAT
1 AAAAAAAAT
7282213 -AAAAAAAT
1 AAAAAAAAT
7282221 AAAAAAAAT
1 AAAAAAAAT
7282230 AAAAAAAAT
1 AAAAAAAAT
7282239 GAAAAAAAA
1 -AAAAAAAA
7282248 GTGAATAAAA
Statistics
Matches: 48, Mismatches: 0, Indels: 6
0.89 0.00 0.11
Matches are distributed among these distances:
7 7 0.15
8 7 0.15
9 17 0.35
10 17 0.35
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:7282211 original size:17 final size:16
Alignment explanation
Indices: 7282189--7282245 Score: 78
Period size: 17 Copynumber: 3.4 Consensus size: 16
7282179 TATGTTTGAA
7282189 AAAAAATGAAAAAAAAT
1 AAAAAAT-AAAAAAAAT
*
7282206 AAAAAATAAAAAAATAA
1 AAAAAATAAAAAAA-AT
7282223 AAAAAATAAAAAAAAT
1 AAAAAATAAAAAAAAT
7282239 GAAAAAA
1 -AAAAAA
7282246 AAGTGAATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
16 8 0.22
17 28 0.78
ACGTcount: A:0.86, C:0.00, G:0.04, T:0.11
Consensus pattern (16 bp):
AAAAAATAAAAAAAAT
Found at i:7282216 original size:24 final size:24
Alignment explanation
Indices: 7282188--7282235 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
7282178 CTATGTTTGA
7282188 AAAAAAATGAAAAAAAATAAAAAAT
1 AAAAAAAT-AAAAAAAATAAAAAAT
7282213 AAAAAAATAAAAAAAATAAAAAA
1 AAAAAAATAAAAAAAATAAAAAA
7282236 AATGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
24 15 0.65
25 8 0.35
ACGTcount: A:0.88, C:0.00, G:0.02, T:0.10
Consensus pattern (24 bp):
AAAAAAATAAAAAAAATAAAAAAT
Found at i:7282254 original size:24 final size:22
Alignment explanation
Indices: 7282187--7282259 Score: 80
Period size: 21 Copynumber: 3.3 Consensus size: 22
7282177 ACTATGTTTG
7282187 AAAAAAAATGAAAAAAAATAA-
1 AAAAAAAATGAAAAAAAATAAT
*
7282208 AAAATAAAA--AAATAAAAAAAAT
1 AAAA-AAAATGAAA-AAAAATAAT
7282230 AAAAAAAATGAAAAAAAAGTGAAT
1 AAAAAAAATGAAAAAAAA-T-AAT
7282254 AAAAAA
1 AAAAAA
7282260 GGAAGACTCA
Statistics
Matches: 43, Mismatches: 2, Indels: 11
0.77 0.04 0.20
Matches are distributed among these distances:
20 3 0.07
21 15 0.35
22 13 0.30
23 3 0.07
24 9 0.21
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (22 bp):
AAAAAAAATGAAAAAAAATAAT
Found at i:7282257 original size:12 final size:11
Alignment explanation
Indices: 7282185--7282260 Score: 52
Period size: 10 Copynumber: 7.0 Consensus size: 11
7282175 ATACTATGTT
7282185 TGAAAAAAAA-
1 TGAAAAAAAAG
7282195 TGAAAAAAAA-
1 TGAAAAAAAAG
* *
7282205 TAAAAAATAAAA
1 TGAAAAA-AAAG
** *
7282217 AAATAAAAAAAA
1 TGA-AAAAAAAG
7282229 T-AAAAAAAA-
1 TGAAAAAAAAG
7282238 TGAAAAAAAAG
1 TGAAAAAAAAG
7282249 TGAATAAAAAAG
1 TGAA-AAAAAAG
7282261 GAAGACTCAA
Statistics
Matches: 57, Mismatches: 3, Indels: 10
0.81 0.04 0.14
Matches are distributed among these distances:
9 1 0.02
10 31 0.54
11 8 0.14
12 13 0.23
13 4 0.07
ACGTcount: A:0.80, C:0.00, G:0.08, T:0.12
Consensus pattern (11 bp):
TGAAAAAAAAG
Found at i:7282259 original size:1 final size:1
Alignment explanation
Indices: 7282187--7282247 Score: 50
Period size: 1 Copynumber: 61.0 Consensus size: 1
7282177 ACTATGTTTG
** * * * * **
7282187 AAAAAAAATGAAAAAAAATAAAAAATAAAAAAATAAAAAAAATAAAAAAAATGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
7282248 GTGAATAAAA
Statistics
Matches: 46, Mismatches: 14, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
1 46 1.00
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (1 bp):
A
Found at i:7283400 original size:42 final size:41
Alignment explanation
Indices: 7283243--7283412 Score: 223
Period size: 41 Copynumber: 4.1 Consensus size: 41
7283233 ATGATTGTCA
* * * *
7283243 AGGAGCAATTTACTTTTCAAAGTCGTAGTGTCTTTGTTTAG
1 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
7283284 AGGAGCAATTTACTTTTCAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
7283325 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *** *
7283366 AAGAGCCATTTATTTTTTCAAAGTCGTTAAGCCTCTGCTTAG
1 AGGAGCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTGTTTAG
7283408 AGGAG
1 AGGAG
7283413 TTTTGATCAG
Statistics
Matches: 115, Mismatches: 13, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
41 86 0.75
42 29 0.25
ACGTcount: A:0.24, C:0.15, G:0.23, T:0.38
Consensus pattern (41 bp):
AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:7283611 original size:6 final size:6
Alignment explanation
Indices: 7283578--7283679 Score: 68
Period size: 6 Copynumber: 16.5 Consensus size: 6
7283568 GGTAAGTCTA
*
7283578 TTTT-T TTTTATT TTTGTAT TTTACAT TTTTA- TTTTAT TTTTAT TTTTAT
1 TTTTAT TTTTA-T TTT-TAT TTT-TAT TTTTAT TTTTAT TTTTAT TTTTAT
* * * *
7283627 TTCTAT TATTAT TATTAT TGTTT-T TATATATAT TTTT-C TTTTAT TTTTAT
1 TTTTAT TTTTAT TTTTAT T-TTTAT T-T-T-TAT TTTTAT TTTTAT TTTTAT
7283677 TTT
1 TTT
7283680 ATGTATTTAT
Statistics
Matches: 78, Mismatches: 10, Indels: 17
0.74 0.10 0.16
Matches are distributed among these distances:
5 13 0.17
6 42 0.54
7 17 0.22
8 4 0.05
9 2 0.03
ACGTcount: A:0.19, C:0.03, G:0.02, T:0.76
Consensus pattern (6 bp):
TTTTAT
Found at i:7283615 original size:18 final size:18
Alignment explanation
Indices: 7283594--7283633 Score: 55
Period size: 17 Copynumber: 2.2 Consensus size: 18
7283584 TTTATTTTTG
7283594 TATTTTACATTTTTATTT-
1 TATTTT-CATTTTTATTTC
*
7283612 TATTTTTATTTTTATTTC
1 TATTTTCATTTTTATTTC
7283630 TATT
1 TATT
7283634 ATTATTATTA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 10 0.50
18 10 0.50
ACGTcount: A:0.20, C:0.05, G:0.00, T:0.75
Consensus pattern (18 bp):
TATTTTCATTTTTATTTC
Found at i:7283638 original size:18 final size:17
Alignment explanation
Indices: 7283602--7283691 Score: 69
Period size: 17 Copynumber: 5.2 Consensus size: 17
7283592 TGTATTTTAC
*
7283602 ATTTTTATTTTATTTTT
1 ATTTTTATTTTATTATT
7283619 ATTTTTATTTCTATTATT
1 ATTTTTATTT-TATTATT
* *
7283637 ATTATTATTGT-TT-TT
1 ATTTTTATTTTATTATT
* * *
7283652 ATATATATTTT-TCTTTT
1 ATTTTTATTTTAT-TATT
7283669 ATTTTTATTTTATGTATTT
1 ATTTTTATTTTAT-TA-TT
7283688 ATTT
1 ATTT
7283692 ATTCATTACT
Statistics
Matches: 57, Mismatches: 11, Indels: 8
0.75 0.14 0.11
Matches are distributed among these distances:
15 10 0.18
16 3 0.05
17 22 0.39
18 16 0.28
19 6 0.11
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (17 bp):
ATTTTTATTTTATTATT
Found at i:7284086 original size:21 final size:22
Alignment explanation
Indices: 7284037--7284086 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
7284027 CACATAGAAA
*
7284037 ATAGAGAGAAAAATAGCTACTG
1 ATAGAGAGAAAAATAGCTACAG
*
7284059 ATTGAGAGAAAAA-AGCATACAG
1 ATAGAGAGAAAAATAGC-TACAG
7284081 A-AGAGA
1 ATAGAGA
7284087 TTTGAAGGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
21 7 0.29
22 17 0.71
ACGTcount: A:0.54, C:0.08, G:0.24, T:0.14
Consensus pattern (22 bp):
ATAGAGAGAAAAATAGCTACAG
Found at i:7284704 original size:5 final size:5
Alignment explanation
Indices: 7284686--7284815 Score: 74
Period size: 5 Copynumber: 25.6 Consensus size: 5
7284676 TTTTTAAAAA
* * * * * *
7284686 TTTA- TTTA- TTTAT TTTAT TATTAG ATTAGG TTTAT TTAAT ATTCT TTTAT
1 TTTAT TTTAT TTTAT TTTAT T-TTAT TTTA-T TTTAT TTTAT TTTAT TTTAT
* *
7284736 CTTTAT TTTAT TTTATT TTTACT TTT-C TTTAT TTT-T TTATTT TTTAT
1 -TTTAT TTTAT TTTA-T TTTA-T TTTAT TTTAT TTTAT TT-TAT TTTAT
7284783 TTTCACT TTTAT TTTAT TTTA- -TTAT TTTAT TTT
1 TTT-A-T TTTAT TTTAT TTTAT TTTAT TTTAT TTT
7284816 CTTTAAATAA
Statistics
Matches: 100, Mismatches: 14, Indels: 23
0.73 0.10 0.17
Matches are distributed among these distances:
3 3 0.03
4 14 0.14
5 53 0.53
6 26 0.26
7 4 0.04
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (5 bp):
TTTAT
Found at i:7284751 original size:16 final size:15
Alignment explanation
Indices: 7284686--7284815 Score: 74
Period size: 16 Copynumber: 8.5 Consensus size: 15
7284676 TTTTTAAAAA
7284686 TTTA-TTTA-TTTAT
1 TTTATTTTATTTTAT
** *
7284699 TTTATTATTAGATTAGG
1 TTTATT-TTATTTTA-T
* * *
7284716 TTTATTTAATATTCT
1 TTTATTTTATTTTAT
7284731 TTTATCTTTATTTTAT
1 TTTAT-TTTATTTTAT
*
7284747 TTTATTTTTACTTTT-C
1 TTTA-TTTTA-TTTTAT
*
7284763 TTTATTTT-TTTATTT
1 TTTATTTTATTT-TAT
7284778 TTTATTTTCACTTTTAT
1 TTTATTTT-A-TTTTAT
7284795 TTTATTTTA--TTAT
1 TTTATTTTATTTTAT
7284808 TTTATTTT
1 TTTATTTT
7284816 CTTTAAATAA
Statistics
Matches: 93, Mismatches: 12, Indels: 24
0.72 0.09 0.19
Matches are distributed among these distances:
13 19 0.20
14 2 0.02
15 20 0.22
16 28 0.30
17 21 0.23
18 3 0.03
ACGTcount: A:0.20, C:0.05, G:0.02, T:0.73
Consensus pattern (15 bp):
TTTATTTTATTTTAT
Found at i:7284781 original size:31 final size:32
Alignment explanation
Indices: 7284731--7284810 Score: 101
Period size: 32 Copynumber: 2.5 Consensus size: 32
7284721 TTAATATTCT
*
7284731 TTTATCTTTATT-TTATTTTATTTTTACTTTT-C
1 TTTAT-TTTATTATT-TTTTATTTTCACTTTTAC
* *
7284763 TTTATTTTTTTATTTTTTATTTTCACTTTTAT
1 TTTATTTTATTATTTTTTATTTTCACTTTTAC
7284795 TTTATTTTATTATTTT
1 TTTATTTTATTATTTT
7284811 ATTTTCTTTA
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
31 20 0.48
32 22 0.52
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (32 bp):
TTTATTTTATTATTTTTTATTTTCACTTTTAC
Found at i:7284804 original size:37 final size:36
Alignment explanation
Indices: 7284741--7284815 Score: 98
Period size: 37 Copynumber: 2.1 Consensus size: 36
7284731 TTTATCTTTA
* *
7284741 TTTTATTTTATTTTTACTTTTCTTTATTTTTTTATT
1 TTTTATTTTACTTTTACTTTTCTTTATTATTTTATT
*
7284777 TTTTATTTTCACTTTTA-TTTTATTTTATTATTTTATT
1 TTTTATTTT-ACTTTTACTTTT-CTTTATTATTTTATT
7284814 TT
1 TT
7284816 CTTTAAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
36 13 0.38
37 21 0.62
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (36 bp):
TTTTATTTTACTTTTACTTTTCTTTATTATTTTATT
Found at i:7288765 original size:17 final size:16
Alignment explanation
Indices: 7288743--7288781 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
7288733 GGACAATTAA
*
7288743 AAAATTAATATGTATTT
1 AAAATTAA-ATGCATTT
*
7288760 AAAATTAACTGCATTT
1 AAAATTAAATGCATTT
7288776 AAAATT
1 AAAATT
7288782 TAAAATTTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 12 0.60
17 8 0.40
ACGTcount: A:0.49, C:0.05, G:0.05, T:0.41
Consensus pattern (16 bp):
AAAATTAAATGCATTT
Found at i:7290078 original size:59 final size:58
Alignment explanation
Indices: 7289960--7290136 Score: 230
Period size: 59 Copynumber: 3.0 Consensus size: 58
7289950 TGCTTTCGTA
* *
7289960 TAAGAAAAATTGATACTTTCAACTTTTTCTTAAAATGTTTTACTTGATAATTTTTATTTT
1 TAAGGAAAATTGATACTTTCAA-TTTTTCTTAAAATGTTTT-TTTGATAATTTTTATTTT
* * **
7290020 TAAGGAAAATTGGTACTTCCAATTTTTCCTTAAAATGTTTTTTTTTTAATTTTTATTTT
1 TAAGGAAAATTGATACTTTCAATTTTT-CTTAAAATGTTTTTTTGATAATTTTTATTTT
* * *
7290079 TAAGGAAAATTGATACTTTTAATTTTTCTTCAAAAT-ATTTTTTGAAAATTTTTATTTT
1 TAAGGAAAATTGATACTTTCAATTTTTCTT-AAAATGTTTTTTTGATAATTTTTATTTT
7290137 AGAAATTTTA
Statistics
Matches: 102, Mismatches: 13, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
58 21 0.21
59 49 0.48
60 32 0.31
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (58 bp):
TAAGGAAAATTGATACTTTCAATTTTTCTTAAAATGTTTTTTTGATAATTTTTATTTT
Found at i:7290223 original size:58 final size:55
Alignment explanation
Indices: 7290146--7290314 Score: 195
Period size: 51 Copynumber: 3.0 Consensus size: 55
7290136 TAGAAATTTT
*
7290146 ATTTTCAAGAAAAATTGATACTTTCAACTTTTCCT-TAAAATATTTTTTAGAAAAAAA
1 ATTTT-AAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT--AAAAAAA
* *
7290203 ATTTTAAAAGAAAAATTGATATTTTCAATTTTTCCTCAAAAATATTTTTT---AAAA
1 ATTTT--AAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAAAAAAA
*
7290257 ATTTT-AGAAAAATTGATACTTTCAACTTTTTCTCAAAAATATTTATTTTTAAAAAAA
1 ATTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATA--T-TTTTTAAAAAAA
7290314 A
1 A
7290315 ATTATTCTAG
Statistics
Matches: 97, Mismatches: 7, Indels: 16
0.81 0.06 0.13
Matches are distributed among these distances:
51 33 0.34
53 1 0.01
54 14 0.14
57 10 0.10
58 27 0.28
59 12 0.12
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (55 bp):
ATTTTAAGAAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAAAAAAA
Done.