Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 34 of 195
Found at i:7439958 original size:11 final size:11
Alignment explanation
Indices: 7439944--7440006 Score: 63
Period size: 11 Copynumber: 5.7 Consensus size: 11
7439934 AAAAGTAAAT
*
7439944 TAATAATTTAA
1 TAATAAATTAA
*
7439955 TAATAAATTCA
1 TAATAAATTAA
* *
7439966 TGATAACTTAA
1 TAATAAATTAA
* *
7439977 TGATAAATTAG
1 TAATAAATTAA
*
7439988 TAATAATTTAA
1 TAATAAATTAA
7439999 TAATAAAT
1 TAATAAAT
7440007 CAGTTTCGAT
Statistics
Matches: 41, Mismatches: 11, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
11 41 1.00
ACGTcount: A:0.52, C:0.03, G:0.05, T:0.40
Consensus pattern (11 bp):
TAATAAATTAA
Found at i:7439976 original size:22 final size:22
Alignment explanation
Indices: 7439944--7440006 Score: 83
Period size: 22 Copynumber: 2.9 Consensus size: 22
7439934 AAAAGTAAAT
7439944 TAATAATTTAATAATAAATTCA-
1 TAATAATTTAATAATAAATT-AG
* * *
7439966 TGATAACTTAATGATAAATTAG
1 TAATAATTTAATAATAAATTAG
7439988 TAATAATTTAATAATAAAT
1 TAATAATTTAATAATAAAT
7440007 CAGTTTCGAT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 1 0.03
22 33 0.97
ACGTcount: A:0.52, C:0.03, G:0.05, T:0.40
Consensus pattern (22 bp):
TAATAATTTAATAATAAATTAG
Found at i:7440094 original size:190 final size:190
Alignment explanation
Indices: 7439755--7440128 Score: 500
Period size: 190 Copynumber: 2.0 Consensus size: 190
7439745 AAAGATAACA
* * *
7439755 AATAACTTAGTAATAAATAAATGATAACTTAAGAGTAAATTTGTGATAATTTAATAATAAATCAA
1 AATAACTTAATAATAAATAAATGATAACTTAAGAGTAAATTAGTAATAATTTAATAATAAATCAA
* * * * * * *
7439820 TTATGGTTAAATAGTAATTAATTGTTAATAGTAAATCATAAATAATTTACTGATAAATCATTGAT
66 TTATGATTAAATAATAATTAATTGTTAAAAGTAAATCATAAATAACTTACTCATAAATCAATAAT
* * * * *
7439885 AATTTAGTAGTACATAATTGATAATTTAATAGTTAATCATTAAAAATTTAAAAGTAAATT
131 AACTTAATAGTAAATAATTGATAATTTAATAATTAATCATTAAAAACTTAAAAGTAAATT
* **
7439945 AATAATTTAATAATAAATTCATGATAACTTAATGA-TAAATTAGTAATAATTTAATAATAAATCA
1 AATAACTTAATAATAAATAAATGATAACTTAA-GAGTAAATTAGTAATAATTTAATAATAAATCA
* * * *
7440009 GTT-TCGATTAAATAATAATTAATTGTTAAAAGTAAATCATAAATAACTTATTCCTAAATTAATA
65 ATTAT-GATTAAATAATAATTAATTGTTAAAAGTAAATCATAAATAACTTACTCATAAATCAATA
* *
7440073 ATAACTTAATAGTAAATAATTGATAATTTAGTAATTAATCATTGAAAACTTAAAAG
129 ATAACTTAATAGTAAATAATTGATAATTTAATAATTAATCATTAAAAACTTAAAAG
7440129 CATAGTTATC
Statistics
Matches: 158, Mismatches: 24, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
189 1 0.01
190 155 0.98
191 2 0.01
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.38
Consensus pattern (190 bp):
AATAACTTAATAATAAATAAATGATAACTTAAGAGTAAATTAGTAATAATTTAATAATAAATCAA
TTATGATTAAATAATAATTAATTGTTAAAAGTAAATCATAAATAACTTACTCATAAATCAATAAT
AACTTAATAGTAAATAATTGATAATTTAATAATTAATCATTAAAAACTTAAAAGTAAATT
Found at i:7440098 original size:22 final size:22
Alignment explanation
Indices: 7440073--7440125 Score: 52
Period size: 22 Copynumber: 2.4 Consensus size: 22
7440063 TAAATTAATA
*
7440073 ATAACTTAATAGTAAATAATTG
1 ATAACTTAATAATAAATAATTG
* * * *
7440095 ATAATTTAGTAATTAATCATTG
1 ATAACTTAATAATAAATAATTG
*
7440117 AAAACTTAA
1 ATAACTTAA
7440126 AAGCATAGTT
Statistics
Matches: 23, Mismatches: 8, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.06, G:0.08, T:0.38
Consensus pattern (22 bp):
ATAACTTAATAATAAATAATTG
Found at i:7440482 original size:34 final size:32
Alignment explanation
Indices: 7440444--7440517 Score: 89
Period size: 31 Copynumber: 2.3 Consensus size: 32
7440434 TAAGAAATAA
7440444 TATTTATATTTTAATAAATATAATAAATTATTA-T
1 TATTTATATTTTAATAAA-AT-ATAAA-TATTATT
*
7440478 TATTTATA-TTTATTAAAATATAAATATTATT
1 TATTTATATTTTAATAAAATATAAATATTATT
*
7440509 TATTAATAT
1 TATTTATAT
7440518 ATAATAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
30 5 0.14
31 13 0.36
32 2 0.06
33 8 0.22
34 8 0.22
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (32 bp):
TATTTATATTTTAATAAAATATAAATATTATT
Found at i:7440505 original size:24 final size:24
Alignment explanation
Indices: 7440478--7440587 Score: 75
Period size: 24 Copynumber: 4.5 Consensus size: 24
7440468 AAATTATTAT
*
7440478 TATTTATATTTATTAAAATATAAA
1 TATTTATATTTATTAAAAAATAAA
*
7440502 TA--T-TATTTATTAATATATAATAAT
1 TATTTATATTTATTAA-A-A-AATAAA
* * *
7440526 TAATCTT-TATGTAATAAAAAAGAAA
1 T-AT-TTATATTTATTAAAAAATAAA
* * *
7440551 TATATATAATTAATAAAAAATAAA
1 TATTTATATTTATTAAAAAATAAA
7440575 TATTTATATTTAT
1 TATTTATATTTAT
7440588 ATGAAAATCA
Statistics
Matches: 65, Mismatches: 13, Indels: 16
0.69 0.14 0.17
Matches are distributed among these distances:
21 10 0.15
22 2 0.03
23 2 0.03
24 34 0.52
25 6 0.09
26 1 0.02
27 1 0.02
28 9 0.14
ACGTcount: A:0.52, C:0.01, G:0.02, T:0.45
Consensus pattern (24 bp):
TATTTATATTTATTAAAAAATAAA
Found at i:7441268 original size:11 final size:11
Alignment explanation
Indices: 7441252--7441305 Score: 54
Period size: 11 Copynumber: 4.9 Consensus size: 11
7441242 TATCACATAG
*
7441252 TAATAAATTAT
1 TAATAAATTAA
*
7441263 TAATAACTTAA
1 TAATAAATTAA
* *
7441274 TAATTAATCAA
1 TAATAAATTAA
*
7441285 TAATAACTTAA
1 TAATAAATTAA
*
7441296 TAGTAAATTA
1 TAATAAATTA
7441306 TGGATAATTT
Statistics
Matches: 33, Mismatches: 10, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
11 33 1.00
ACGTcount: A:0.54, C:0.06, G:0.02, T:0.39
Consensus pattern (11 bp):
TAATAAATTAA
Found at i:7441355 original size:22 final size:22
Alignment explanation
Indices: 7441249--7441500 Score: 132
Period size: 22 Copynumber: 11.5 Consensus size: 22
7441239 AAATATCACA
* * *
7441249 TAGTAATAAATTATTAATAACT
1 TAGTAGTAAATCATTAATAATT
* * * * *
7441271 TAATAATTAATCAATAATAACT
1 TAGTAGTAAATCATTAATAATT
* * **
7441293 TAATAGTAAATTATGGATAATT
1 TAGTAGTAAATCATTAATAATT
* * *
7441315 TATTA-TATATCAGTAATAATT
1 TAGTAGTAAATCATTAATAATT
* *
7441336 TAGTAGTGAATCATTGATAATT
1 TAGTAGTAAATCATTAATAATT
7441358 TAGTAGTAAATCATTAATAATTT
1 TAGTAGTAAATCATTAATAA-TT
* * * *
7441381 TA-TAATAAATAATCAAAAATT
1 TAGTAGTAAATCATTAATAATT
* * * **
7441402 AAGTAGTAAATCAATGATAACA
1 TAGTAGTAAATCATTAATAATT
* * *
7441424 TAATAGTAAA-AATATAATAATA
1 TAGTAGTAAATCAT-TAATAATT
* * * *
7441446 TAATAATAAATTAGTAATAATT
1 TAGTAGTAAATCATTAATAATT
* * * *
7441468 TAGTAGTAAATTATTGACAACT
1 TAGTAGTAAATCATTAATAATT
7441490 TAGTAGTAAAT
1 TAGTAGTAAAT
7441501 TGATAACTTA
Statistics
Matches: 172, Mismatches: 53, Indels: 10
0.73 0.23 0.04
Matches are distributed among these distances:
21 19 0.11
22 148 0.86
23 5 0.03
ACGTcount: A:0.50, C:0.04, G:0.08, T:0.38
Consensus pattern (22 bp):
TAGTAGTAAATCATTAATAATT
Found at i:7441414 original size:66 final size:67
Alignment explanation
Indices: 7441332--7441500 Score: 191
Period size: 66 Copynumber: 2.6 Consensus size: 67
7441322 TATCAGTAAT
* * * * *
7441332 AATTTAGTAGTGAATCATTGATAATTTAGTAGTAAATCAT-TAATAATTTTATAATAAA-TAATC
1 AATTTAGTAGTAAATCATTGATAACTTAGTAGTAAATAATATAATAATATAATAATAAATTAAT-
7441395 AAA
65 AAA
* * * * *
7441398 AATTAAGTAGTAAATCAATGATAACATAATAGTAAA-AATATAATAATATAATAATAAATTAGTA
1 AATTTAGTAGTAAATCATTGATAACTTAGTAGTAAATAATATAATAATATAATAATAAATTAATA
*
7441462 AT
66 AA
* *
7441464 AATTTAGTAGTAAATTATTGACAACTTAGTAGTAAAT
1 AATTTAGTAGTAAATCATTGATAACTTAGTAGTAAAT
7441501 TGATAACTTA
Statistics
Matches: 83, Mismatches: 17, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
65 2 0.02
66 78 0.94
67 3 0.04
ACGTcount: A:0.50, C:0.04, G:0.09, T:0.36
Consensus pattern (67 bp):
AATTTAGTAGTAAATCATTGATAACTTAGTAGTAAATAATATAATAATATAATAATAAATTAATA
AA
Found at i:7441611 original size:22 final size:22
Alignment explanation
Indices: 7441581--7441676 Score: 66
Period size: 22 Copynumber: 4.4 Consensus size: 22
7441571 AATAGTAAAT
*
7441581 TAGTTAATCAATGATAACTTTA
1 TAGTAAATCAATGATAACTTTA
* * ***
7441603 TAGTAAATCATTGATAAATCGC
1 TAGTAAATCAATGATAACTTTA
* * *
7441625 TAATAAATTAATTATAACTTTA
1 TAGTAAATCAATGATAACTTTA
* * * * *
7441647 TAATAAATTATTAATAACTTAA
1 TAGTAAATCAATGATAACTTTA
7441669 TAGTAAAT
1 TAGTAAAT
7441677 TATCAACAAT
Statistics
Matches: 56, Mismatches: 18, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
22 56 1.00
ACGTcount: A:0.47, C:0.07, G:0.06, T:0.40
Consensus pattern (22 bp):
TAGTAAATCAATGATAACTTTA
Found at i:7441677 original size:22 final size:21
Alignment explanation
Indices: 7441628--7441802 Score: 99
Period size: 22 Copynumber: 8.2 Consensus size: 21
7441618 AAATCGCTAA
* *
7441628 TAAATTAATTATAACTTTATAA
1 TAAATT-ATTATAACTTAATAG
7441650 TAAATTATTAATAACTTAATAG
1 TAAATTATT-ATAACTTAATAG
* * * *
7441672 TAAATTATCAACAATTTAATTG
1 TAAATTAT-TATAACTTAATAG
*
7441694 TAAATCATTCATAACTTAATAG
1 TAAATTATT-ATAACTTAATAG
*
7441716 TAACTTA-T-T---TTAATAG
1 TAAATTATTATAACTTAATAG
* * * *
7441732 TAAATTGTCCATAAATTAATAA
1 TAAATTAT-TATAACTTAATAG
* * *
7441754 TAAATTATTGATAATTTAGTAA
1 TAAATTATT-ATAACTTAATAG
* *
7441776 TAAATTACTGATAACATAATAG
1 TAAATTA-TTATAACTTAATAG
7441798 TAAAT
1 TAAAT
7441803 CAATGATAAT
Statistics
Matches: 116, Mismatches: 26, Indels: 22
0.71 0.16 0.13
Matches are distributed among these distances:
16 12 0.10
19 2 0.02
21 4 0.03
22 97 0.84
23 1 0.01
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.41
Consensus pattern (21 bp):
TAAATTATTATAACTTAATAG
Found at i:7442321 original size:21 final size:21
Alignment explanation
Indices: 7442297--7442343 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
7442287 TGATGATTAC
7442297 CAAAATTCT-ATCAAAAGTTAT
1 CAAAATTCTAAT-AAAAGTTAT
* * *
7442318 CAAACTTTTAATAAAGGTTAT
1 CAAAATTCTAATAAAAGTTAT
7442339 CAAAA
1 CAAAA
7442344 CATATAAAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
21 19 0.90
22 2 0.10
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (21 bp):
CAAAATTCTAATAAAAGTTAT
Found at i:7445894 original size:33 final size:33
Alignment explanation
Indices: 7445820--7445909 Score: 83
Period size: 33 Copynumber: 2.7 Consensus size: 33
7445810 TGCAAGCTCA
**
7445820 TATCATAAACTTCAGACTTAAAATTACTTCTTT
1 TATCATAAACTTCAGACTTAAAATTACTTCCAT
* * * *
7445853 TATGATAAA-TATCAGCCTTCAAGTTACTTCCAT
1 TATCATAAACT-TCAGACTTAAAATTACTTCCAT
** *
7445886 TATCATAAACCCCAGACTTCAAAT
1 TATCATAAACTTCAGACTTAAAAT
7445910 AAGTTCTCTT
Statistics
Matches: 44, Mismatches: 11, Indels: 4
0.75 0.19 0.07
Matches are distributed among these distances:
32 1 0.02
33 43 0.98
ACGTcount: A:0.37, C:0.22, G:0.06, T:0.36
Consensus pattern (33 bp):
TATCATAAACTTCAGACTTAAAATTACTTCCAT
Found at i:7446856 original size:28 final size:27
Alignment explanation
Indices: 7446825--7446888 Score: 76
Period size: 28 Copynumber: 2.3 Consensus size: 27
7446815 ATTGAGTAAA
*
7446825 ATTTAAATAT-TTTTATATTCGATAAAAT
1 ATTTAAATATATTTTA-ATT-AATAAAAT
*
7446853 ATTTTAATATATTTTAATTAATAAAAT
1 ATTTAAATATATTTTAATTAATAAAAT
7446880 ATTTTAAAT
1 A-TTTAAAT
7446889 TTGAATTGAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
27 8 0.26
28 18 0.58
29 5 0.16
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.52
Consensus pattern (27 bp):
ATTTAAATATATTTTAATTAATAAAAT
Found at i:7447222 original size:18 final size:17
Alignment explanation
Indices: 7447197--7447239 Score: 59
Period size: 18 Copynumber: 2.5 Consensus size: 17
7447187 ATTTTGATGA
* *
7447197 AATTAATTGATTTAATC
1 AATTAATTCACTTAATC
7447214 AATTTAATTCACTTAATC
1 AA-TTAATTCACTTAATC
7447232 AATTAATT
1 AATTAATT
7447240 ATTGAATTAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 8 0.35
18 15 0.65
ACGTcount: A:0.42, C:0.09, G:0.02, T:0.47
Consensus pattern (17 bp):
AATTAATTCACTTAATC
Found at i:7452323 original size:53 final size:53
Alignment explanation
Indices: 7452243--7452347 Score: 192
Period size: 53 Copynumber: 2.0 Consensus size: 53
7452233 GTTAGTTTTC
7452243 GATTACAAGTAGCTGCCATCAGTATTTCTAACGTTTGAAATTCTCTAGGAATT
1 GATTACAAGTAGCTGCCATCAGTATTTCTAACGTTTGAAATTCTCTAGGAATT
* *
7452296 GATTACAAGTAGCTGCTATCAGTATTTCTAACTTTTGAAATTCTCTAGGAAT
1 GATTACAAGTAGCTGCCATCAGTATTTCTAACGTTTGAAATTCTCTAGGAAT
7452348 GAATAATTTT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
53 50 1.00
ACGTcount: A:0.30, C:0.16, G:0.16, T:0.37
Consensus pattern (53 bp):
GATTACAAGTAGCTGCCATCAGTATTTCTAACGTTTGAAATTCTCTAGGAATT
Found at i:7454633 original size:27 final size:27
Alignment explanation
Indices: 7454603--7454654 Score: 95
Period size: 27 Copynumber: 1.9 Consensus size: 27
7454593 GAATTCCTTG
7454603 TAGTCAAGGTCCCATCCAATCAATTCT
1 TAGTCAAGGTCCCATCCAATCAATTCT
*
7454630 TAGTCAAGTTCCCATCCAATCAATT
1 TAGTCAAGGTCCCATCCAATCAATT
7454655 ATCAGTTGGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 24 1.00
ACGTcount: A:0.31, C:0.29, G:0.10, T:0.31
Consensus pattern (27 bp):
TAGTCAAGGTCCCATCCAATCAATTCT
Found at i:7460009 original size:10 final size:10
Alignment explanation
Indices: 7459991--7460078 Score: 60
Period size: 10 Copynumber: 9.0 Consensus size: 10
7459981 TTATTTTAAA
*
7459991 ATTTGTTTAT
1 ATTTATTTAT
7460001 ATTTATTTAT
1 ATTTATTTAT
* *
7460011 GTTCATTTAT
1 ATTTATTTAT
7460021 ATTTATTTA-
1 ATTTATTTAT
7460030 A-TTA--TA-
1 ATTTATTTAT
7460036 ATTTATTTATT
1 ATTTATTTA-T
* *
7460047 ATTCATGAATAT
1 ATTTAT--TTAT
7460059 ATTTATTTAT
1 ATTTATTTAT
*
7460069 ATATATTTAT
1 ATTTATTTAT
7460079 TAACAAAAAT
Statistics
Matches: 61, Mismatches: 10, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
6 3 0.05
7 3 0.05
8 3 0.05
9 3 0.05
10 36 0.59
11 5 0.08
12 6 0.10
13 2 0.03
ACGTcount: A:0.32, C:0.02, G:0.03, T:0.62
Consensus pattern (10 bp):
ATTTATTTAT
Found at i:7460044 original size:19 final size:18
Alignment explanation
Indices: 7460020--7460079 Score: 61
Period size: 19 Copynumber: 3.2 Consensus size: 18
7460010 TGTTCATTTA
7460020 TATTTATTTAATTATAATT
1 TATTTATTT-ATTATAATT
*
7460039 TATTTA-TTATTCATGAATA
1 TATTTATTTATT-AT-AATT
7460058 TATTTATTTA-TATATATT
1 TATTTATTTATTATA-ATT
7460076 TATT
1 TATT
7460080 AACAAAAATT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
17 4 0.11
18 12 0.34
19 16 0.46
20 3 0.09
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (18 bp):
TATTTATTTATTATAATT
Found at i:7460074 original size:14 final size:14
Alignment explanation
Indices: 7459991--7460079 Score: 55
Period size: 14 Copynumber: 6.5 Consensus size: 14
7459981 TTATTTTAAA
* *
7459991 ATTTGTTTATATTT
1 ATTTATTTATATAT
*
7460005 ATTTATGTTCATTTAT
1 ATTTAT-TT-ATATAT
7460021 ATTTATTTA-AT-T
1 ATTTATTTATATAT
*
7460033 A-TAATTTAT-T-T
1 ATTTATTTATATAT
*
7460044 A-TTATTCATGAATAT
1 ATTTATTTAT--ATAT
7460059 ATTTATTTATATAT
1 ATTTATTTATATAT
7460073 ATTTATT
1 ATTTATT
7460080 AACAAAAATT
Statistics
Matches: 59, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
11 15 0.25
12 2 0.03
13 1 0.02
14 18 0.31
15 6 0.10
16 17 0.29
ACGTcount: A:0.31, C:0.02, G:0.03, T:0.63
Consensus pattern (14 bp):
ATTTATTTATATAT
Found at i:7460281 original size:22 final size:22
Alignment explanation
Indices: 7460240--7460282 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 22
7460230 AATTATAATT
**
7460240 ATAATTATAAAAATTCTTTTAA
1 ATAATTATAAAAATAATTTTAA
*
7460262 ATAATTATTAAAATAATTTTA
1 ATAATTATAAAAATAATTTTA
7460283 TGACTATTTT
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (22 bp):
ATAATTATAAAAATAATTTTAA
Found at i:7469993 original size:21 final size:21
Alignment explanation
Indices: 7469967--7470006 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
7469957 CCATTTTCAC
7469967 CAAAGCTTTCATTTTTCTCTT
1 CAAAGCTTTCATTTTTCTCTT
*
7469988 CAAAGCTTTCGTTTTTCTC
1 CAAAGCTTTCATTTTTCTC
7470007 AACCAAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.17, C:0.25, G:0.07, T:0.50
Consensus pattern (21 bp):
CAAAGCTTTCATTTTTCTCTT
Found at i:7470013 original size:22 final size:21
Alignment explanation
Indices: 7469963--7470013 Score: 66
Period size: 21 Copynumber: 2.4 Consensus size: 21
7469953 AACCCCATTT
7469963 TCACCAAAGCTTTCATTTTTC
1 TCACCAAAGCTTTCATTTTTC
** *
7469984 TCTTCAAAGCTTTCGTTTTTC
1 TCACCAAAGCTTTCATTTTTC
7470005 TCAACCAAA
1 TC-ACCAAA
7470014 CCCTCCGTTT
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.25, C:0.27, G:0.06, T:0.41
Consensus pattern (21 bp):
TCACCAAAGCTTTCATTTTTC
Found at i:7478847 original size:54 final size:54
Alignment explanation
Indices: 7478783--7478890 Score: 216
Period size: 54 Copynumber: 2.0 Consensus size: 54
7478773 TTCTATTATT
7478783 AAAATGGATAAAGCAGGGAATTAGCTAAGCTATTCTAACAATTAAGCTGGATTC
1 AAAATGGATAAAGCAGGGAATTAGCTAAGCTATTCTAACAATTAAGCTGGATTC
7478837 AAAATGGATAAAGCAGGGAATTAGCTAAGCTATTCTAACAATTAAGCTGGATTC
1 AAAATGGATAAAGCAGGGAATTAGCTAAGCTATTCTAACAATTAAGCTGGATTC
7478891 CGCTTCTGTT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26
Consensus pattern (54 bp):
AAAATGGATAAAGCAGGGAATTAGCTAAGCTATTCTAACAATTAAGCTGGATTC
Found at i:7479987 original size:13 final size:14
Alignment explanation
Indices: 7479958--7479988 Score: 55
Period size: 14 Copynumber: 2.3 Consensus size: 14
7479948 AGTAGGTTGA
7479958 AAAAAAAAAACTAG
1 AAAAAAAAAACTAG
7479972 AAAAAAAAAACT-G
1 AAAAAAAAAACTAG
7479985 AAAA
1 AAAA
7479989 TCAATTTGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 5 0.29
14 12 0.71
ACGTcount: A:0.81, C:0.06, G:0.06, T:0.06
Consensus pattern (14 bp):
AAAAAAAAAACTAG
Found at i:7480600 original size:2 final size:2
Alignment explanation
Indices: 7480593--7480623 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
7480583 CACTGTTAAC
7480593 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
7480624 TTGTTTTCAG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:7481414 original size:27 final size:27
Alignment explanation
Indices: 7481379--7481436 Score: 91
Period size: 27 Copynumber: 2.2 Consensus size: 27
7481369 TTTATTTAAT
* *
7481379 ATAAATTTTTTTT-AATCTTAATTATA
1 ATAATTTTTTTTTCAATCGTAATTATA
7481405 ATAATTTTTTTTTCAATCGTAATTATA
1 ATAATTTTTTTTTCAATCGTAATTATA
7481432 ATAAT
1 ATAAT
7481437 AATTATTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 12 0.41
27 17 0.59
ACGTcount: A:0.38, C:0.05, G:0.02, T:0.55
Consensus pattern (27 bp):
ATAATTTTTTTTTCAATCGTAATTATA
Found at i:7482104 original size:29 final size:29
Alignment explanation
Indices: 7482050--7482105 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
7482040 ATTAAGTTTA
* *
7482050 AATAAAATATTAAAAACTTGATTAATTAT
1 AATAAAATATTAAAAACTTAAATAATTAT
7482079 AATAAAATATTAAAAA-TTCAAATAATT
1 AATAAAATATTAAAAACTT-AAATAATT
7482106 TTTTAATTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 2 0.08
29 22 0.92
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.36
Consensus pattern (29 bp):
AATAAAATATTAAAAACTTAAATAATTAT
Found at i:7482555 original size:2 final size:2
Alignment explanation
Indices: 7482548--7482577 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
7482538 AGCTCCACGC
*
7482548 AT AT AT AT AA AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7482578 GAGTAAGGAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7482695 original size:2 final size:2
Alignment explanation
Indices: 7482688--7482714 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7482678 CACTTACATA
7482688 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7482715 CACACACGCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7483536 original size:10 final size:9
Alignment explanation
Indices: 7483516--7483555 Score: 50
Period size: 9 Copynumber: 4.7 Consensus size: 9
7483506 TAAGTTTTAG
7483516 AAAATTAAA
1 AAAATTAAA
7483525 AAAATCT-AA
1 AAAAT-TAAA
7483534 AAAATT--A
1 AAAATTAAA
7483541 AAAATTAAA
1 AAAATTAAA
7483550 AAAATT
1 AAAATT
7483556 CCAAATAATA
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
7 7 0.25
8 1 0.04
9 19 0.68
10 1 0.04
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (9 bp):
AAAATTAAA
Found at i:7484034 original size:26 final size:27
Alignment explanation
Indices: 7484005--7484061 Score: 66
Period size: 26 Copynumber: 2.2 Consensus size: 27
7483995 TTAGAAATTT
7484005 TAAAATTT-TAAAA-AGTAGTTAATTAA
1 TAAAATTTATAAAATAGTA-TTAATTAA
* *
7484031 T-AAATTTATAAAATAGTATTATTTTA
1 TAAAATTTATAAAATAGTATTAATTAA
7484057 TAAAA
1 TAAAA
7484062 AATATGAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
25 6 0.23
26 13 0.50
27 7 0.27
ACGTcount: A:0.53, C:0.00, G:0.05, T:0.42
Consensus pattern (27 bp):
TAAAATTTATAAAATAGTATTAATTAA
Found at i:7484178 original size:23 final size:22
Alignment explanation
Indices: 7484130--7484178 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
7484120 AAAAATTTAT
* *
7484130 TTTTCAAAAAAATGAAATATAA
1 TTTTCAAAAAAATCAAAAATAA
* *
7484152 TTTTCAAAAAATTCAAGAAATAG
1 TTTTCAAAAAAATCAA-AAATAA
7484175 TTTT
1 TTTT
7484179 TTAACAAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
22 14 0.64
23 8 0.36
ACGTcount: A:0.51, C:0.06, G:0.06, T:0.37
Consensus pattern (22 bp):
TTTTCAAAAAAATCAAAAATAA
Found at i:7484428 original size:17 final size:17
Alignment explanation
Indices: 7484390--7484428 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
7484380 TTTTTCATTT
7484390 TTTTTAATTTTTAAAGA
1 TTTTTAATTTTTAAAGA
* *
7484407 ATTTTAATTTTTAAATA
1 TTTTTAATTTTTAAAGA
7484424 TTTTT
1 TTTTT
7484429 TTGAAAATAC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.33, C:0.00, G:0.03, T:0.64
Consensus pattern (17 bp):
TTTTTAATTTTTAAAGA
Found at i:7485675 original size:16 final size:17
Alignment explanation
Indices: 7485654--7485700 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
7485644 TATTTGATAT
7485654 ATAAAATTATGA-TA-AA
1 ATAAAATTAT-ATTATAA
*
7485670 ATAAAATAATATTATAA
1 ATAAAATTATATTATAA
*
7485687 ATAAAATTAAATTA
1 ATAAAATTATATTA
7485701 AATAATATCA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
15 1 0.04
16 11 0.42
17 14 0.54
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.34
Consensus pattern (17 bp):
ATAAAATTATATTATAA
Found at i:7485800 original size:16 final size:18
Alignment explanation
Indices: 7485779--7485815 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
7485769 AAATTAAATT
7485779 TTTAAATT-TT-ATATAA
1 TTTAAATTATTAATATAA
7485795 TTTAAATTATTAATATAA
1 TTTAAATTATTAATATAA
7485813 TTT
1 TTT
7485816 TAAAGGTATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 8 0.42
17 2 0.11
18 9 0.47
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
TTTAAATTATTAATATAA
Found at i:7487174 original size:17 final size:19
Alignment explanation
Indices: 7487141--7487175 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
7487131 TATATTAAAT
7487141 ATTTAGTTTATTTCTAATG
1 ATTTAGTTTATTTCTAATG
7487160 ATTT-GTTTA-TTCTAAT
1 ATTTAGTTTATTTCTAAT
7487176 TTTTTTAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 5 0.31
19 4 0.25
ACGTcount: A:0.26, C:0.06, G:0.09, T:0.60
Consensus pattern (19 bp):
ATTTAGTTTATTTCTAATG
Found at i:7498246 original size:7 final size:7
Alignment explanation
Indices: 7498234--7498267 Score: 59
Period size: 7 Copynumber: 4.9 Consensus size: 7
7498224 ACATATACTT
7498234 ACTATCA
1 ACTATCA
7498241 ACTATCA
1 ACTATCA
*
7498248 ACTATTA
1 ACTATCA
7498255 ACTATCA
1 ACTATCA
7498262 ACTATC
1 ACTATC
7498268 TCAATCAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
7 25 1.00
ACGTcount: A:0.41, C:0.26, G:0.00, T:0.32
Consensus pattern (7 bp):
ACTATCA
Found at i:7503335 original size:22 final size:23
Alignment explanation
Indices: 7503305--7503350 Score: 58
Period size: 22 Copynumber: 2.0 Consensus size: 23
7503295 AATTATAAAG
*
7503305 TAATCAATTAATAA-ATTAATTT
1 TAATCAATTAATAACAATAATTT
* *
7503327 TAATTAATTATTAACAATAATTT
1 TAATCAATTAATAACAATAATTT
7503350 T
1 T
7503351 TAAAAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 12 0.60
23 8 0.40
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (23 bp):
TAATCAATTAATAACAATAATTT
Found at i:7503413 original size:22 final size:21
Alignment explanation
Indices: 7503384--7503424 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 21
7503374 TCAATTCAAA
7503384 AATTAAAT-TAATTAAAATTTT
1 AATTAAATATAA-TAAAATTTT
7503405 AATTCAAATATAATAAAATT
1 AATT-AAATATAATAAAATT
7503425 AATATATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 4 0.22
22 11 0.61
23 3 0.17
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (21 bp):
AATTAAATATAATAAAATTTT
Found at i:7503424 original size:16 final size:15
Alignment explanation
Indices: 7503405--7503454 Score: 59
Period size: 16 Copynumber: 3.3 Consensus size: 15
7503395 TTAAAATTTT
7503405 AATTCAAATATAATAA
1 AATT-AAATATAATAA
7503421 AATT-AATAT-ATAA
1 AATTAAATATAATAA
*
7503434 AATTAAAAATATATAA
1 AATTAAATATA-ATAA
7503450 AATTA
1 AATTA
7503455 TTCATTTCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
13 8 0.27
14 9 0.30
16 13 0.43
ACGTcount: A:0.64, C:0.02, G:0.00, T:0.34
Consensus pattern (15 bp):
AATTAAATATAATAA
Found at i:7503430 original size:14 final size:14
Alignment explanation
Indices: 7503411--7503454 Score: 54
Period size: 14 Copynumber: 3.1 Consensus size: 14
7503401 TTTTAATTCA
7503411 AATATAATAAAATT
1 AATATAATAAAATT
7503425 AATAT-ATAAAATT
1 AATATAATAAAATT
*
7503438 AAAAATATATAAAATT
1 -AATATA-ATAAAATT
7503454 A
1 A
7503455 TTCATTTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
13 8 0.31
14 9 0.35
15 1 0.04
16 8 0.31
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (14 bp):
AATATAATAAAATT
Found at i:7503684 original size:28 final size:27
Alignment explanation
Indices: 7503634--7503686 Score: 88
Period size: 28 Copynumber: 1.9 Consensus size: 27
7503624 ATTAATTTTC
*
7503634 AAAATAAAAAATATAATTTAATTAACA
1 AAAATAAAAAAAATAATTTAATTAACA
7503661 AAAATAAAATAAAATAATTTAATTAA
1 AAAATAAAA-AAAATAATTTAATTAA
7503687 TTTAATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
27 9 0.38
28 15 0.62
ACGTcount: A:0.68, C:0.02, G:0.00, T:0.30
Consensus pattern (27 bp):
AAAATAAAAAAAATAATTTAATTAACA
Found at i:7503702 original size:15 final size:15
Alignment explanation
Indices: 7503678--7503711 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
7503668 AATAAAATAA
* *
7503678 TTTAATTAATTTAAT
1 TTTAAATAATTCAAT
7503693 TTTAAATAATTCAAT
1 TTTAAATAATTCAAT
7503708 TTTA
1 TTTA
7503712 CTGTTCAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.00, T:0.56
Consensus pattern (15 bp):
TTTAAATAATTCAAT
Found at i:7509987 original size:2 final size:2
Alignment explanation
Indices: 7509980--7510008 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
7509970 CGTGAATTGG
7509980 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7510009 TTTGGGGTGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:7527199 original size:2 final size:2
Alignment explanation
Indices: 7527185--7527225 Score: 57
Period size: 2 Copynumber: 20.5 Consensus size: 2
7527175 AAATAATAAC
*
7527185 TA TA TA T- TCA TA TA TA TA TA TA TA TA TA TA TA TA GA TA TA T
1 TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7527226 CTTGAAATAG
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
1 1 0.03
2 33 0.94
3 1 0.03
ACGTcount: A:0.46, C:0.02, G:0.02, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7528027 original size:12 final size:12
Alignment explanation
Indices: 7527985--7528042 Score: 53
Period size: 12 Copynumber: 4.7 Consensus size: 12
7527975 TATATATAAA
* *
7527985 AATATAAAATTA
1 AATATATAATTT
*
7527997 AATAAATAATTT
1 AATATATAATTT
*
7528009 AAAATATAATTT
1 AATATATAATTT
*
7528021 AATATATATATAT
1 AATATATA-ATTT
7528034 ATATATATA
1 A-ATATATA
7528043 TAAAATCTAG
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
12 26 0.70
13 4 0.11
14 7 0.19
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (12 bp):
AATATATAATTT
Found at i:7528797 original size:24 final size:25
Alignment explanation
Indices: 7528742--7528799 Score: 64
Period size: 24 Copynumber: 2.3 Consensus size: 25
7528732 TTTATTAACT
** *
7528742 ATAAAAATGAAAAAAAAGAAAGGAAG
1 ATAAAAAT-AAAAAAAAGAAAAAAAA
*
7528768 AGAAAAAT-AAAAAAAGAAAAAAAA
1 ATAAAAATAAAAAAAAGAAAAAAAA
7528792 ATAAAAAT
1 ATAAAAAT
7528800 TGAGTTGTCA
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
24 20 0.74
26 7 0.26
ACGTcount: A:0.79, C:0.00, G:0.12, T:0.09
Consensus pattern (25 bp):
ATAAAAATAAAAAAAAGAAAAAAAA
Found at i:7529239 original size:18 final size:16
Alignment explanation
Indices: 7529209--7529248 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
7529199 CAGGTGTGTT
7529209 AAAAAAATAAAATATAA
1 AAAAAAATAAAAT-TAA
*
7529226 AAAAATAATTAAATTAA
1 AAAAA-AATAAAATTAA
7529243 AAAAAA
1 AAAAAA
7529249 GAAAAATATT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 1 0.05
17 13 0.62
18 7 0.33
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (16 bp):
AAAAAAATAAAATTAA
Found at i:7529596 original size:20 final size:20
Alignment explanation
Indices: 7529573--7529618 Score: 65
Period size: 20 Copynumber: 2.3 Consensus size: 20
7529563 TAAAATAGTT
* *
7529573 TAAAAAGTTAAAAAAATACA
1 TAAAAAGGTAAAAAAATAAA
*
7529593 TAAAAAGGTAAAAAATTAAA
1 TAAAAAGGTAAAAAAATAAA
7529613 TAAAAA
1 TAAAAA
7529619 ACCCAAAAGA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.20
Consensus pattern (20 bp):
TAAAAAGGTAAAAAAATAAA
Found at i:7530952 original size:19 final size:20
Alignment explanation
Indices: 7530915--7530952 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
7530905 TTTTATATAA
*
7530915 ATATTAAAATAAAAACAAAG
1 ATATGAAAATAAAAACAAAG
*
7530935 ATATGAAAA-AAAATCAAA
1 ATATGAAAATAAAAACAAA
7530953 ATTTTATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 8 0.50
20 8 0.50
ACGTcount: A:0.71, C:0.05, G:0.05, T:0.18
Consensus pattern (20 bp):
ATATGAAAATAAAAACAAAG
Found at i:7531062 original size:35 final size:35
Alignment explanation
Indices: 7531016--7531085 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
7531006 ATTAAAATAT
*
7531016 TTATAAACTTTGGTTTGAAAAAATAAAATATAAAA
1 TTATAAACTTTGATTTGAAAAAATAAAATATAAAA
*
7531051 TTATAAACTTTGATTTGAAAAAATAAAGTATAAAA
1 TTATAAACTTTGATTTGAAAAAATAAAATATAAAA
7531086 AAAAGTTAAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.54, C:0.03, G:0.09, T:0.34
Consensus pattern (35 bp):
TTATAAACTTTGATTTGAAAAAATAAAATATAAAA
Found at i:7532997 original size:14 final size:13
Alignment explanation
Indices: 7532978--7533082 Score: 63
Period size: 14 Copynumber: 7.9 Consensus size: 13
7532968 GCAGAGGATG
7532978 ATATATATATATAT
1 ATATATATATAT-T
7532992 ATATATATATATT
1 ATATATATATATT
*
7533005 GAGATATATATATTT
1 -ATATATATATA-TT
* *
7533020 TTATATATATACTG
1 ATATATATATA-TT
* * *
7533034 AGAAATATATTTT
1 ATATATATATATT
*
7533047 TTATATATAT-TT
1 ATATATATATATT
* *
7533059 TTAT-TGAAATA-T
1 ATATAT-ATATATT
7533071 ATATATATATAT
1 ATATATATATAT
7533083 CTCAATAGGA
Statistics
Matches: 69, Mismatches: 16, Indels: 13
0.70 0.16 0.13
Matches are distributed among these distances:
11 1 0.01
12 17 0.25
13 10 0.14
14 39 0.57
15 2 0.03
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (13 bp):
ATATATATATATT
Found at i:7533024 original size:28 final size:28
Alignment explanation
Indices: 7532980--7533056 Score: 111
Period size: 28 Copynumber: 2.8 Consensus size: 28
7532970 AGAGGATGAT
* * *
7532980 ATATATATATATATATATATATATTGAG
1 ATATATATATTTTTATATATATACTGAG
7533008 ATATATATATTTTTATATATATACTGAG
1 ATATATATATTTTTATATATATACTGAG
*
7533036 AAATATAT-TTTTTATATATAT
1 ATATATATATTTTTATATATAT
7533057 TTTTATTGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
27 13 0.29
28 32 0.71
ACGTcount: A:0.43, C:0.01, G:0.05, T:0.51
Consensus pattern (28 bp):
ATATATATATTTTTATATATATACTGAG
Found at i:7533043 original size:2 final size:2
Alignment explanation
Indices: 7532978--7533030 Score: 63
Period size: 2 Copynumber: 26.5 Consensus size: 2
7532968 GCAGAGGATG
* *
7532978 AT AT AT AT AT AT AT AT AT AT AT AT AT -T GAG AT AT AT AT AT TT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT
*
7533020 TT AT AT AT AT A
1 AT AT AT AT AT A
7533031 CTGAGAAATA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
1 1 0.02
2 44 0.98
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.51
Consensus pattern (2 bp):
AT
Found at i:7542754 original size:2 final size:2
Alignment explanation
Indices: 7542747--7542773 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
7542737 TAACTTCAAA
7542747 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
7542774 AACAAAACAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:7547117 original size:16 final size:18
Alignment explanation
Indices: 7547098--7547134 Score: 60
Period size: 16 Copynumber: 2.2 Consensus size: 18
7547088 AAAATATAGA
7547098 AAAATAAAA-AAAT-TTT
1 AAAATAAAATAAATGTTT
7547114 AAAATAAAATAAATGTTT
1 AAAATAAAATAAATGTTT
7547132 AAA
1 AAA
7547135 TTTTTTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 9 0.47
17 4 0.21
18 6 0.32
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (18 bp):
AAAATAAAATAAATGTTT
Found at i:7549478 original size:8 final size:8
Alignment explanation
Indices: 7549465--7549512 Score: 78
Period size: 8 Copynumber: 6.0 Consensus size: 8
7549455 TTAGATAAAA
7549465 GCGTTAAG
1 GCGTTAAG
7549473 GCGTTAAG
1 GCGTTAAG
7549481 GCGTTAAG
1 GCGTTAAG
7549489 GCGTTAAG
1 GCGTTAAG
*
7549497 GTGTTAAG
1 GCGTTAAG
*
7549505 GTGTTAAG
1 GCGTTAAG
7549513 AATTAATCGT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
8 39 1.00
ACGTcount: A:0.25, C:0.08, G:0.38, T:0.29
Consensus pattern (8 bp):
GCGTTAAG
Found at i:7551669 original size:6 final size:6
Alignment explanation
Indices: 7551658--7551692 Score: 70
Period size: 6 Copynumber: 5.8 Consensus size: 6
7551648 GCATGCAGAC
7551658 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTA
1 ATGTAT ATGTAT ATGTAT ATGTAT ATGTAT ATGTA
7551693 CATATAGATA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.34, C:0.00, G:0.17, T:0.49
Consensus pattern (6 bp):
ATGTAT
Found at i:7555088 original size:19 final size:19
Alignment explanation
Indices: 7555064--7555104 Score: 66
Period size: 19 Copynumber: 2.2 Consensus size: 19
7555054 TGTTAGGTTG
7555064 TTTCTTGGGTTGTT-TGGAT
1 TTTCTTGGGTT-TTCTGGAT
7555083 TTTCTTGGGTTTTCTGGAT
1 TTTCTTGGGTTTTCTGGAT
7555102 TTT
1 TTT
7555105 TTTTAGTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 2 0.10
19 19 0.90
ACGTcount: A:0.05, C:0.07, G:0.27, T:0.61
Consensus pattern (19 bp):
TTTCTTGGGTTTTCTGGAT
Found at i:7555095 original size:10 final size:10
Alignment explanation
Indices: 7555064--7555124 Score: 54
Period size: 10 Copynumber: 6.3 Consensus size: 10
7555054 TGTTAGGTTG
7555064 TTTCTTGGGT
1 TTTCTTGGGT
* *
7555074 TGT-TTGGAT
1 TTTCTTGGGT
7555083 TTTCTTGGGT
1 TTTCTTGGGT
*
7555093 TTTC-TGGAT
1 TTTCTTGGGT
* **
7555102 TTTTTTTAGT
1 TTTCTTGGGT
7555112 TTTCTTGGGT
1 TTTCTTGGGT
7555122 TTT
1 TTT
7555125 TTTTTTTTTG
Statistics
Matches: 37, Mismatches: 12, Indels: 4
0.70 0.23 0.08
Matches are distributed among these distances:
9 14 0.38
10 23 0.62
ACGTcount: A:0.05, C:0.07, G:0.25, T:0.64
Consensus pattern (10 bp):
TTTCTTGGGT
Found at i:7555113 original size:19 final size:20
Alignment explanation
Indices: 7555077--7555128 Score: 61
Period size: 19 Copynumber: 2.6 Consensus size: 20
7555067 CTTGGGTTGT
* **
7555077 TTGGATTTTCTTGGGTTTTC
1 TTGGATTTTTTTTAGTTTTC
7555097 -TGGATTTTTTTTAGTTTTC
1 TTGGATTTTTTTTAGTTTTC
*
7555116 TTGGGTTTTTTTT
1 TTGGATTTTTTTT
7555129 TTTTTGGTTT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.06, C:0.06, G:0.21, T:0.67
Consensus pattern (20 bp):
TTGGATTTTTTTTAGTTTTC
Found at i:7555133 original size:19 final size:19
Alignment explanation
Indices: 7555091--7555128 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
7555081 ATTTTCTTGG
7555091 GTTTTCTGGATTTTTTTTA
1 GTTTTCTGGATTTTTTTTA
*
7555110 GTTTTCTTGGGTTTTTTTT
1 GTTTTC-TGGATTTTTTTT
7555129 TTTTTGGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.05, C:0.05, G:0.18, T:0.71
Consensus pattern (19 bp):
GTTTTCTGGATTTTTTTTA
Found at i:7555145 original size:23 final size:24
Alignment explanation
Indices: 7555101--7555147 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
7555091 GTTTTCTGGA
* *
7555101 TTTTTTTTAGTTTTCTTGGGTTTT
1 TTTTTTTTAGGTTTCTTAGGTTTT
*
7555125 TTTTTTTTTGGTTTC-TAGGTTTT
1 TTTTTTTTAGGTTTCTTAGGTTTT
7555148 GTGAGTTTTT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
23 7 0.35
24 13 0.65
ACGTcount: A:0.04, C:0.04, G:0.17, T:0.74
Consensus pattern (24 bp):
TTTTTTTTAGGTTTCTTAGGTTTT
Found at i:7567424 original size:43 final size:43
Alignment explanation
Indices: 7567374--7567503 Score: 172
Period size: 43 Copynumber: 3.0 Consensus size: 43
7567364 TGAGCCCATT
* * *
7567374 AGCCTATTTCTTATTTTAAAGTCATTTACCCTTTGTATAAAGG
1 AGCCTATTTCTTATTTTAAAGTTATTTAGCCTATGTATAAAGG
* * *
7567417 AGGCTATTTCTTATTTCAAAGTTATTTAGCCTCTGTATAAAGG
1 AGCCTATTTCTTATTTTAAAGTTATTTAGCCTATGTATAAAGG
* * *
7567460 AGCCCATTTATTAATTTAAAGTTATTT-GCCTATGTATAAAGG
1 AGCCTATTTCTTATTTTAAAGTTATTTAGCCTATGTATAAAGG
7567502 AG
1 AG
7567504 TTTATTTTGT
Statistics
Matches: 76, Mismatches: 11, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
42 16 0.21
43 60 0.79
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.42
Consensus pattern (43 bp):
AGCCTATTTCTTATTTTAAAGTTATTTAGCCTATGTATAAAGG
Found at i:7571531 original size:13 final size:12
Alignment explanation
Indices: 7571511--7571578 Score: 64
Period size: 12 Copynumber: 5.5 Consensus size: 12
7571501 GTACTTTTAT
7571511 TTTTAATTTTGA
1 TTTTAATTTTGA
**
7571523 TTATTAATTAAGA
1 TT-TTAATTTTGA
*
7571536 TTTTGATTTTGA
1 TTTTAATTTTGA
7571548 TTTTCAATTTTGA
1 TTTT-AATTTTGA
** *
7571561 TTTTGTTTTTAA
1 TTTTAATTTTGA
7571573 TTTTAA
1 TTTTAA
7571579 GTTTATGGAA
Statistics
Matches: 43, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
12 22 0.51
13 21 0.49
ACGTcount: A:0.26, C:0.01, G:0.09, T:0.63
Consensus pattern (12 bp):
TTTTAATTTTGA
Found at i:7571556 original size:25 final size:24
Alignment explanation
Indices: 7571511--7571578 Score: 73
Period size: 25 Copynumber: 2.8 Consensus size: 24
7571501 GTACTTTTAT
*
7571511 TTTTAATTTTGATTATTAATTAAGA
1 TTTTGATTTTGATT-TTAATTAAGA
**
7571536 TTTTGATTTTGATTTTCAATTTTGA
1 TTTTGATTTTGATTTT-AATTAAGA
* *
7571561 TTTTGTTTTTAATTTTAA
1 TTTTGATTTTGATTTTAA
7571579 GTTTATGGAA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
24 4 0.11
25 33 0.89
ACGTcount: A:0.26, C:0.01, G:0.09, T:0.63
Consensus pattern (24 bp):
TTTTGATTTTGATTTTAATTAAGA
Found at i:7571557 original size:19 final size:18
Alignment explanation
Indices: 7571535--7571576 Score: 66
Period size: 19 Copynumber: 2.3 Consensus size: 18
7571525 ATTAATTAAG
7571535 ATTTTGATTTTGATTTTCA
1 ATTTTGATTTTG-TTTTCA
*
7571554 ATTTTGATTTTGTTTTTA
1 ATTTTGATTTTGTTTTCA
7571572 ATTTT
1 ATTTT
7571577 AAGTTTATGG
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.19, C:0.02, G:0.10, T:0.69
Consensus pattern (18 bp):
ATTTTGATTTTGTTTTCA
Found at i:7572714 original size:36 final size:36
Alignment explanation
Indices: 7572674--7572747 Score: 103
Period size: 36 Copynumber: 2.1 Consensus size: 36
7572664 AATACTTGTG
* * **
7572674 TGATTAATATTTTTATAATTATTATATTTACTTGCA
1 TGATTAATATTCTCATAATTAGAATATTTACTTGCA
*
7572710 TGATTAATATTCTCATAATTAGAATATTTATTTGCA
1 TGATTAATATTCTCATAATTAGAATATTTACTTGCA
7572746 TG
1 TG
7572748 GTTATTTATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.34, C:0.07, G:0.08, T:0.51
Consensus pattern (36 bp):
TGATTAATATTCTCATAATTAGAATATTTACTTGCA
Found at i:7572777 original size:25 final size:23
Alignment explanation
Indices: 7572734--7572783 Score: 64
Period size: 25 Copynumber: 2.1 Consensus size: 23
7572724 ATAATTAGAA
* *
7572734 TATTTATTTGCATGGTTATTTAT
1 TATTTATTTGCATGATTATTAAT
7572757 TATTTATTATTGCATGATTATTAAT
1 TATTTA-T-TTGCATGATTATTAAT
7572782 TA
1 TA
7572784 ACTTAATTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
23 6 0.26
24 1 0.04
25 16 0.70
ACGTcount: A:0.28, C:0.04, G:0.10, T:0.58
Consensus pattern (23 bp):
TATTTATTTGCATGATTATTAAT
Found at i:7572908 original size:23 final size:23
Alignment explanation
Indices: 7572850--7573030 Score: 95
Period size: 23 Copynumber: 7.7 Consensus size: 23
7572840 TAATTGCATG
**
7572850 TTTGCATGAAAATTATTATATTTA
1 TTTGCATGATTATT-TTATATTTA
* * *
7572874 CTTGTATTATTATTTTATATTTA
1 TTTGCATGATTATTTTATATTTA
**
7572897 TTTGCATGATTACCTAATATATTTA
1 TTTGCATGATTA--TTTTATATTTA
* *
7572922 TGATTGCATG-TTATTAATATACTTA
1 T--TTGCATGATTATT-TTATATTTA
*
7572947 TTTGCATGATTA-TTAATATATTA
1 TTTGCATGATTATTTTATAT-TTA
** *
7572970 TTTGTGTGACTTA--TTA-ATATA
1 TTTGCATGA-TTATTTTATATTTA
* *
7572991 TCTGCATG-GTATTTTATATTTA
1 TTTGCATGATTATTTTATATTTA
*
7573013 ATTGCATGATTATATTTA
1 TTTGCATGATTAT-TTTA
7573031 ATTGCATAGT
Statistics
Matches: 117, Mismatches: 27, Indels: 26
0.69 0.16 0.15
Matches are distributed among these distances:
19 2 0.02
21 10 0.09
22 15 0.13
23 41 0.35
24 20 0.17
25 19 0.16
26 3 0.03
27 7 0.06
ACGTcount: A:0.31, C:0.07, G:0.10, T:0.52
Consensus pattern (23 bp):
TTTGCATGATTATTTTATATTTA
Found at i:7572964 original size:24 final size:24
Alignment explanation
Indices: 7572850--7572991 Score: 128
Period size: 23 Copynumber: 5.9 Consensus size: 24
7572840 TAATTGCATG
** *
7572850 TTTGCATGAAAATTATTATATTTA
1 TTTGCATGATTATTAATATATTTA
* * * *
7572874 CTTGTATTATTATT-TTATATTTA
1 TTTGCATGATTATTAATATATTTA
*
7572897 TTTGCATGATTACCTAATATATTTA
1 TTTGCATGATTA-TTAATATATTTA
*
7572922 TGATTGCATG-TTATTAATATACTTA
1 T--TTGCATGATTATTAATATATTTA
7572947 TTTGCATGATTATTAATATA-TTA
1 TTTGCATGATTATTAATATATTTA
**
7572970 TTTGTGTGACTTATTAATATAT
1 TTTGCATGA-TTATTAATATAT
7572992 CTGCATGGTA
Statistics
Matches: 97, Mismatches: 14, Indels: 13
0.78 0.11 0.10
Matches are distributed among these distances:
23 35 0.36
24 32 0.33
25 20 0.21
26 3 0.03
27 7 0.07
ACGTcount: A:0.32, C:0.06, G:0.09, T:0.53
Consensus pattern (24 bp):
TTTGCATGATTATTAATATATTTA
Found at i:7576599 original size:59 final size:58
Alignment explanation
Indices: 7576481--7576636 Score: 240
Period size: 59 Copynumber: 2.7 Consensus size: 58
7576471 TTGTGCAGGG
* * * *
7576481 AAAATTGATTCTTTCAATTTTTCCTCAAAAATATTTTTTTGAAAACTTATTTTTAAGA
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTATTTTCAAGA
*
7576539 AAAATTGATACTTTCAACTTTTCCTCGAAAAATATTTTTTAGAAAGCTTATTTTCAAGA
1 AAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTAGAAAACTTATTTTCAAGA
* *
7576598 AAAATTGATAATTTCAACTTTTCCTTAAAAATATTTTTT
1 AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTT
7576637 GAATTTTATT
Statistics
Matches: 90, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
58 37 0.41
59 53 0.59
ACGTcount: A:0.37, C:0.12, G:0.06, T:0.46
Consensus pattern (58 bp):
AAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTAGAAAACTTATTTTCAAGA
Found at i:7576660 original size:5 final size:5
Alignment explanation
Indices: 7576652--7576727 Score: 84
Period size: 5 Copynumber: 14.8 Consensus size: 5
7576642 TTATTTAAAG
**
7576652 AAAAT AAAAT -AAA- AAAAT AAAAT AAAAAT GAAAAT AAAAAT AAAGG
1 AAAAT AAAAT AAAAT AAAAT AAAAT -AAAAT -AAAAT -AAAAT AAAAT
7576698 AAAAT AAAAAT AAAAT AAAAT AAAAT AAAA
1 AAAAT -AAAAT AAAAT AAAAT AAAAT AAAA
7576728 AATATTAAAC
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
4 6 0.10
5 35 0.57
6 20 0.33
ACGTcount: A:0.80, C:0.00, G:0.04, T:0.16
Consensus pattern (5 bp):
AAAAT
Found at i:7576673 original size:6 final size:6
Alignment explanation
Indices: 7576652--7576728 Score: 67
Period size: 6 Copynumber: 13.7 Consensus size: 6
7576642 TTATTTAAAG
* * **
7576652 AAAAT- AAAATA AAAAAA TAAAATA AAAATG AAAATA AAAAT- -AAAGG
1 AAAATA AAAATA AAAATA -AAAATA AAAATA AAAATA AAAATA AAAATA
7576698 AAAATA AAAAT- AAAAT- AAAAT- AAAATA AAAA
1 AAAATA AAAATA AAAATA AAAATA AAAATA AAAA
7576729 ATATTAAACA
Statistics
Matches: 60, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
4 3 0.05
5 20 0.33
6 32 0.53
7 5 0.08
ACGTcount: A:0.81, C:0.00, G:0.04, T:0.16
Consensus pattern (6 bp):
AAAATA
Found at i:7576702 original size:16 final size:15
Alignment explanation
Indices: 7576647--7576726 Score: 85
Period size: 16 Copynumber: 5.3 Consensus size: 15
7576637 GAATTTTATT
7576647 TAAAGAAAAT-AAAA
1 TAAAGAAAATAAAAA
7576661 TAAA-AAAATAAAATA
1 TAAAGAAAATAAAA-A
*
7576676 AAAATGAAAATAAAAA
1 TAAA-GAAAATAAAAA
7576692 TAAAGGAAAATAAAAA
1 TAAA-GAAAATAAAAA
*
7576708 TAAAATAAAAT-AAAA
1 T-AAAGAAAATAAAAA
7576723 TAAA
1 TAAA
7576727 AAATATTAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
13 5 0.09
14 10 0.18
15 9 0.16
16 21 0.37
17 12 0.21
ACGTcount: A:0.79, C:0.00, G:0.05, T:0.16
Consensus pattern (15 bp):
TAAAGAAAATAAAAA
Found at i:7576793 original size:4 final size:3
Alignment explanation
Indices: 7576757--7576805 Score: 71
Period size: 3 Copynumber: 15.7 Consensus size: 3
7576747 CTAATCAATA
*
7576757 AAT AAT AAT AAT AAT AAT AAT AGT AAT AAT AAAT AAAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT -AAT -AAT AAT AAT AAT
7576804 AA
1 AA
7576806 ATGAAAAAAA
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
3 36 0.84
4 7 0.16
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7577823 original size:39 final size:38
Alignment explanation
Indices: 7577707--7577825 Score: 118
Period size: 39 Copynumber: 3.1 Consensus size: 38
7577697 AAATAATAAC
*
7577707 AATAAAAAATAA-AAGCAGATAAATAATGAAAATATTAATA
1 AATAAAAAATAATAA--AAATAAA-AATGAAAATATTAATA
* *
7577747 GATAAAAAATAATAAAAACAAAAA--AATATATATTAATA
1 AATAAAAAATAATAAAAATAAAAATGAA-A-ATATTAATA
* *
7577785 AATAGACAAATAATAAAAATAAAAATGAAAATAATAATA
1 AATA-AAAAATAATAAAAATAAAAATGAAAATATTAATA
7577824 AA
1 AA
7577826 AGCCCATTGG
Statistics
Matches: 66, Mismatches: 7, Indels: 13
0.77 0.08 0.15
Matches are distributed among these distances:
36 2 0.03
37 1 0.02
38 14 0.21
39 33 0.50
40 12 0.18
41 4 0.06
ACGTcount: A:0.71, C:0.03, G:0.05, T:0.22
Consensus pattern (38 bp):
AATAAAAAATAATAAAAATAAAAATGAAAATATTAATA
Found at i:7578234 original size:82 final size:81
Alignment explanation
Indices: 7578140--7578587 Score: 442
Period size: 82 Copynumber: 5.5 Consensus size: 81
7578130 GATGGCCCCC
* * *
7578140 CTAATCAAAGGCTTAACAACTTTGAAAAATAAAATTGCTCCTCTAATCAAAGGCTCAACGACTTT
1 CTAATCAGAGGCTCAACAACTTTG-AAAAT-AAATGGCTCCTCTAATCAAAGGCTCAACGACTTT
*
7578205 GGAAAATAAATGACTCC-
64 AGAAAATAAATGACTCCT
* *
7578222 CTAATCAGAGGCTCAACAACTTTGAAAAATAAATGGCTCCTCTAATCAGAGGCTCAACGATTTTA
1 CTAATCAGAGGCTCAACAACTTTG-AAAATAAATGGCTCCTCTAATCAAAGGCTCAACGACTTTA
*
7578287 GAAAATAAATGGCTCCT
65 GAAAATAAATGACTCCT
* ** * ** * * * *
7578304 CTTATCAGAGGCTTTACGACTTTTGAAAATAAATGGCTTTTCTAATTAAAGGCTCGATGACTTTT
1 CTAATCAGAGGCTCAACAAC-TTTGAAAATAAATGGCTCCTCTAATCAAAGGCTCAACGACTTTA
** *
7578369 GAGAAATAAACCACTCTT
65 GA-AAATAAATGACTCCT
** * * * *
7578387 CTAATCAGAGGCTCAATGACTTTGAAAATAAATAAAGCTCCTCTAAACATAGGCTTAACGACTTT
1 CTAATCAGAGGCTCAACAACTTTGAAAATAAAT--GGCTCCTCTAATCAAAGGCTCAACGACTTT
* *
7578452 AAAAAAATAAATGGCTCCT
64 -AGAAAATAAATGACTCCT
* ** * * *
7578471 CTAATCGGAGGCTCAATGACTTTG---ATAAA--GCTCCTCTAAACAGAGGCTCAACGACTTTTG
1 CTAATCAGAGGCTCAACAACTTTGAAAATAAATGGCTCCTCTAATCAAAGGCTCAACGACTTTAG
7578531 AAAAATAAATTG-CTCCT
66 -AAAATAAA-TGACTCCT
*
7578548 CTAATAAGAGGCTCAACAACTTTGAAAATAAATGGCTCCT
1 CTAATCAGAGGCTCAACAACTTTGAAAATAAATGGCTCCT
7578588 TGATGATTGT
Statistics
Matches: 302, Mismatches: 51, Indels: 26
0.80 0.13 0.07
Matches are distributed among these distances:
77 60 0.20
78 2 0.01
80 5 0.02
81 51 0.17
82 97 0.32
83 31 0.10
84 55 0.18
85 1 0.00
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.28
Consensus pattern (81 bp):
CTAATCAGAGGCTCAACAACTTTGAAAATAAATGGCTCCTCTAATCAAAGGCTCAACGACTTTAG
AAAATAAATGACTCCT
Found at i:7578267 original size:41 final size:41
Alignment explanation
Indices: 7578124--7578587 Score: 437
Period size: 42 Copynumber: 11.4 Consensus size: 41
7578114 CATGATCTTG
* * * * * *
7578124 AAAATAGATGGCCCCCCTAATCAAAGGCTTAACAACTTTGA
1 AAAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGA
* * *
7578165 AAAATAAAATTGCTCCTCTAATCAAAGGCTCAACGACTTTGG
1 AAAAT-AAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGA
* *
7578207 AAAATAAATGACTCC-CTAATCAGAGGCTCAACAACTTTGA
1 AAAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGA
*
7578247 AAAATAAATGGCTCCTCTAATCAGAGGCTCAACGA-TTTTA
1 AAAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGA
* **
7578287 GAAAATAAATGGCTCCTCTTATCAGAGGCTTTACGACTTTTG-
1 -AAAATAAATGGCTCCTCTAATCAGAGGCTCAACGAC-TTTGA
** * * * *
7578329 AAAATAAATGGCTTTTCTAATTAAAGGCTCGATGACTTTTGA
1 AAAATAAATGGCTCCTCTAATCAGAGGCTCAACGAC-TTTGA
* *** * *
7578371 GAAATAAACCACTCTTCTAATCAGAGGCTCAATGACTTTG-
1 AAAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGA
* * * * *
7578411 AAAATAAATAAAGCTCCTCTAAACATAGGCTTAACGACTTTAAA
1 AAAATAAAT--GGCTCCTCTAATCAGAGGCTCAACGACTTT-GA
* *
7578455 AAAATAAATGGCTCCTCTAATCGGAGGCTCAATGACTTTG-
1 AAAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGA
*
7578495 ---ATAAA--GCTCCTCTAAACAGAGGCTCAACGACTTTTGA
1 AAAATAAATGGCTCCTCTAATCAGAGGCTCAACGAC-TTTGA
* * *
7578532 AAAATAAATTGCTCCTCTAATAAGAGGCTCAACAACTTTG-
1 AAAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGA
7578572 AAAATAAATGGCTCCT
1 AAAATAAATGGCTCCT
7578588 TGATGATTGT
Statistics
Matches: 347, Mismatches: 59, Indels: 35
0.79 0.13 0.08
Matches are distributed among these distances:
35 23 0.07
36 4 0.01
37 5 0.01
40 67 0.19
41 104 0.30
42 132 0.38
43 3 0.01
44 9 0.03
ACGTcount: A:0.38, C:0.20, G:0.15, T:0.27
Consensus pattern (41 bp):
AAAATAAATGGCTCCTCTAATCAGAGGCTCAACGACTTTGA
Found at i:7578546 original size:77 final size:77
Alignment explanation
Indices: 7578418--7578572 Score: 229
Period size: 77 Copynumber: 2.0 Consensus size: 77
7578408 TTGAAAATAA
* * **
7578418 ATAAAGCTCCTCTAAACATAGGCTTAACGACTTTAAAAAAATAAATGGCTCCTCTAATCGGAGGC
1 ATAAAGCTCCTCTAAACAGAGGCTCAACGACTTTAAAAAAATAAATGGCTCCTCTAATAAGAGGC
**
7578483 TCAATGACTTTG
66 TCAACAACTTTG
** *
7578495 ATAAAGCTCCTCTAAACAGAGGCTCAACGACTTTTGAAAAATAAATTGCTCCTCTAATAAGAGGC
1 ATAAAGCTCCTCTAAACAGAGGCTCAACGACTTTAAAAAAATAAATGGCTCCTCTAATAAGAGGC
7578560 TCAACAACTTTG
66 TCAACAACTTTG
7578572 A
1 A
7578573 AAATAAATGG
Statistics
Matches: 69, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
77 69 1.00
ACGTcount: A:0.37, C:0.21, G:0.15, T:0.26
Consensus pattern (77 bp):
ATAAAGCTCCTCTAAACAGAGGCTCAACGACTTTAAAAAAATAAATGGCTCCTCTAATAAGAGGC
TCAACAACTTTG
Found at i:7578981 original size:42 final size:43
Alignment explanation
Indices: 7578899--7578981 Score: 98
Period size: 43 Copynumber: 2.0 Consensus size: 43
7578889 ATTCATATCC
*** *
7578899 AAAAATCTAAAGCTTTTCATTTGAATTTTGGAGATTCACATAA
1 AAAAATCTAAAGCTTTTCATTTGAATTTCAAAGACTCACATAA
*
7578942 AAAAAT-TCAAAGCTTTTCATTTGAA-TTCAAAGGCTCACAT
1 AAAAATCT-AAAGCTTTTCATTTGAATTTCAAAGACTCACAT
7578982 GCAATAAAAC
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
42 11 0.32
43 23 0.68
ACGTcount: A:0.40, C:0.14, G:0.11, T:0.35
Consensus pattern (43 bp):
AAAAATCTAAAGCTTTTCATTTGAATTTCAAAGACTCACATAA
Found at i:7583123 original size:14 final size:14
Alignment explanation
Indices: 7583083--7583130 Score: 51
Period size: 14 Copynumber: 3.3 Consensus size: 14
7583073 ATTTTTTTCA
*
7583083 TTTAATTTATTTGAT
1 TTTAATTAATTTG-T
*
7583098 TTATATTTAATTTGT
1 TT-TAATTAATTTGT
*
7583113 TTTAATTAATTTTT
1 TTTAATTAATTTGT
7583127 TTTA
1 TTTA
7583131 CTAAAAAAAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
14 14 0.50
15 5 0.18
16 9 0.32
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (14 bp):
TTTAATTAATTTGT
Found at i:7586084 original size:15 final size:14
Alignment explanation
Indices: 7586026--7586086 Score: 50
Period size: 14 Copynumber: 4.2 Consensus size: 14
7586016 TGTTTAGTAT
* *
7586026 TTTGGATGTTAGGG
1 TTTGGATTTTAAGG
*
7586040 TTTCGATTTTAAGG
1 TTTGGATTTTAAGG
* **
7586054 TTTGGAGATTGGAGG
1 TTTGGA-TTTTAAGG
7586069 TTTGGATTTTAAAGG
1 TTTGGATTTT-AAGG
7586084 TTT
1 TTT
7586087 TCGATGTTTT
Statistics
Matches: 35, Mismatches: 10, Indels: 3
0.73 0.21 0.06
Matches are distributed among these distances:
14 18 0.51
15 17 0.49
ACGTcount: A:0.20, C:0.02, G:0.33, T:0.46
Consensus pattern (14 bp):
TTTGGATTTTAAGG
Found at i:7586233 original size:3 final size:3
Alignment explanation
Indices: 7586225--7586377 Score: 150
Period size: 3 Copynumber: 51.3 Consensus size: 3
7586215 CATATTTTAT
*
7586225 TTA TTA TTA TTA TTA TT- TATA TTA TTA CTA TTA TTA TTA TTA -TA
1 TTA TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA
* * * * * * * *
7586269 TTA TTA TTA TTA TT- TATA TTA CTA CTA CTA CTA CTA CTA CTA CTA
1 TTA TTA TTA TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* * * *
7586314 CTA CTA CTA CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7586362 TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA T
7586378 CTTTATATAA
Statistics
Matches: 141, Mismatches: 4, Indels: 10
0.91 0.03 0.06
Matches are distributed among these distances:
2 4 0.03
3 135 0.96
4 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.00, T:0.58
Consensus pattern (3 bp):
TTA
Found at i:7587730 original size:12 final size:12
Alignment explanation
Indices: 7587710--7587748 Score: 55
Period size: 11 Copynumber: 3.4 Consensus size: 12
7587700 GGCTAGGATA
7587710 GGCTGTAAGGGT
1 GGCTGTAAGGGT
*
7587722 GGTTGTAA-GGT
1 GGCTGTAAGGGT
7587733 GGCTGT-AGGGT
1 GGCTGTAAGGGT
7587744 GGCTG
1 GGCTG
7587749 ATCTGATGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
10 1 0.04
11 16 0.67
12 7 0.29
ACGTcount: A:0.13, C:0.08, G:0.51, T:0.28
Consensus pattern (12 bp):
GGCTGTAAGGGT
Found at i:7587926 original size:17 final size:17
Alignment explanation
Indices: 7587886--7587937 Score: 59
Period size: 17 Copynumber: 3.1 Consensus size: 17
7587876 ATTAAAGTAA
7587886 TATTAATATTTTATTAT
1 TATTAATATTTTATTAT
* * *
7587903 CAATAATTTTTTATTAT
1 TATTAATATTTTATTAT
* *
7587920 TATTAATAGTTTAATAT
1 TATTAATATTTTATTAT
7587937 T
1 T
7587938 GATAAATAAA
Statistics
Matches: 27, Mismatches: 8, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
17 27 1.00
ACGTcount: A:0.37, C:0.02, G:0.02, T:0.60
Consensus pattern (17 bp):
TATTAATATTTTATTAT
Found at i:7588531 original size:22 final size:22
Alignment explanation
Indices: 7588489--7588542 Score: 63
Period size: 22 Copynumber: 2.5 Consensus size: 22
7588479 TCGAGAATTG
* *
7588489 AAATTATGCCAAGATGTCTTAA
1 AAATTATGCCAAGAGGACTTAA
* *
7588511 AAATTATGCCTAGAGGACTTAG
1 AAATTATGCCAAGAGGACTTAA
*
7588533 AAATCATGCC
1 AAATTATGCC
7588543 CGGAGGTCTT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (22 bp):
AAATTATGCCAAGAGGACTTAA
Found at i:7588684 original size:132 final size:132
Alignment explanation
Indices: 7588164--7588685 Score: 484
Period size: 132 Copynumber: 4.0 Consensus size: 132
7588154 AGAAATAAAG
* * * * * * ** *
7588164 AATCGACCAGGATAACATCGCAAGTTAAAAAATAAGAAATCGATTGAAACAACACTGCGAATCGA
1 AATCGACTAAGATAACACCGCAGGTCAAAAAATAAGGAATCGATCAAAACAACACCGCGAATCGA
** * * * *
7588229 AATTATGCGTAGAGGTCTTAAAGATTATGCCCAGAGGTCTTAGAAATCAT--ATACGAAGGTCTT
66 AATTATGCCCAGAGGTCTTAAAGATTATGCCCAAAGGACTTAGAAATCATGCCT-GGAA-GTCTT
7588292 ACAA
129 ACAA
* * * ** * * **
7588296 AATCGA-T-TGGTAACACCGTAGGTC-AAAAATAAGGAATCGATCAGGATAACGCCGTAAATCGA
1 AATCGACTAAGATAACACCGCAGGTCAAAAAATAAGGAATCGATCAAAACAACACCGCGAATCGA
* * * * *
7588358 AATTATTCCCGGAGGTCTTAAAGATTATACCCTGAA-GACTTAGAAATAATGCCT--ATAGATCT
66 AATTATGCCCAGAGGTCTTAAAGATTATGCCC-AAAGGACTTAGAAATCATGCCTGGA-AG-TCT
7588420 TACAA
128 TACAA
* * * * ** * * *
7588425 AATCGACTAAGATAACATCGCAAGTCAAAAAATAAAGAATCGATTAGGACAACATCGAGAATTGA
1 AATCGACTAAGATAACACCGCAGGTCAAAAAATAAGGAATCGATCAAAACAACACCGCGAATCGA
* * * * * * * *
7588490 AATTATGCCAAGATGTCTTAAAAATTATGCCTAGAGGACTTAGAAATCATGCCCGGAGGTCTTAT
66 AATTATGCCCAGAGGTCTTAAAGATTATGCCCAAAGGACTTAGAAATCATGCCTGGAAGTCTTAC
7588555 AA
131 AA
* * *
7588557 AATCGACTAAGACAACACCACAGGTCAAAAAATAAGGAATCGATCAAAACAACACCGCGAATCAA
1 AATCGACTAAGATAACACCGCAGGTCAAAAAATAAGGAATCGATCAAAACAACACCGCGAATCGA
* *
7588622 AATTATGCCCAGAGGTCTTAAAGATTATGCCCAAAGGACTCAGAAATCATGCTTGGAAGTCTTA
66 AATTATGCCCAGAGGTCTTAAAGATTATGCCCAAAGGACTTAGAAATCATGCCTGGAAGTCTTA
7588686 AAGATTATGC
Statistics
Matches: 305, Mismatches: 74, Indels: 22
0.76 0.18 0.05
Matches are distributed among these distances:
128 2 0.01
129 82 0.27
130 13 0.04
131 14 0.05
132 192 0.63
133 1 0.00
134 1 0.00
ACGTcount: A:0.41, C:0.18, G:0.18, T:0.22
Consensus pattern (132 bp):
AATCGACTAAGATAACACCGCAGGTCAAAAAATAAGGAATCGATCAAAACAACACCGCGAATCGA
AATTATGCCCAGAGGTCTTAAAGATTATGCCCAAAGGACTTAGAAATCATGCCTGGAAGTCTTAC
AA
Found at i:7588728 original size:44 final size:45
Alignment explanation
Indices: 7588634--7588729 Score: 126
Period size: 44 Copynumber: 2.2 Consensus size: 45
7588624 TTATGCCCAG
* *
7588634 AGGTCTTAAAGATTATGCCCAAAGGACTCAGAAATCATGCTTGGA
1 AGGTCTTAAAGATTATGCCCAAAGGACTCAAAAATCATGCTTCGA
* *
7588679 A-GTCTTAAAGATTATGCCCGAAGGTC-CTAAAAATCATGC-TCGA
1 AGGTCTTAAAGATTATGCCCAAAGGACTC-AAAAATCATGCTTCGA
7588722 AGGTCTTA
1 AGGTCTTA
7588730 TAGAATCGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
43 5 0.11
44 39 0.87
45 1 0.02
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (45 bp):
AGGTCTTAAAGATTATGCCCAAAGGACTCAAAAATCATGCTTCGA
Found at i:7588916 original size:110 final size:110
Alignment explanation
Indices: 7588796--7589004 Score: 247
Period size: 110 Copynumber: 1.9 Consensus size: 110
7588786 ACTGCGAATC
* * * * * * * *
7588796 GAAATTATGCCCGGAGGTTTTATAAAATCAACTGGGATAACATTGCAGGTCAAAAAATAAGAAAT
1 GAAATCATGCCCAGAAGTTTTACAAAATCAACTGGGACAACATCGCAGGTAAAAAAAAAAGAAAT
* *
7588861 CGATCGGGACAACACCATAAATCAAAATTATGCCTGGAGTACTTA
66 CGATCGAGACAACACCACAAATCAAAATTATGCCTGGAGTACTTA
* * * * *
7588906 GAAATCATGCCCAGAAGTTTTACAGAATCGACTGTGACAACATCGTAGGTAAAAAAAAAAGGAAT
1 GAAATCATGCCCAGAAGTTTTACAAAATCAACTGGGACAACATCGCAGGTAAAAAAAAAAGAAAT
* * * *
7588971 TGATCGAGACAATACCGCGAATCAAAATTATGCC
66 CGATCGAGACAACACCACAAATCAAAATTATGCC
7589005 CAAAGATCTT
Statistics
Matches: 80, Mismatches: 19, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
110 80 1.00
ACGTcount: A:0.42, C:0.17, G:0.19, T:0.22
Consensus pattern (110 bp):
GAAATCATGCCCAGAAGTTTTACAAAATCAACTGGGACAACATCGCAGGTAAAAAAAAAAGAAAT
CGATCGAGACAACACCACAAATCAAAATTATGCCTGGAGTACTTA
Found at i:7589089 original size:21 final size:20
Alignment explanation
Indices: 7588994--7589102 Score: 74
Period size: 22 Copynumber: 5.0 Consensus size: 20
7588984 ACCGCGAATC
* *
7588994 AAAATTATGCCCAAAGATCTT
1 AAAATTATG-CCGAAGGTCTT
*
7589015 AAAGATTATGCCCGAAGGACTT
1 AAA-ATTATG-CCGAAGGTCTT
* * *
7589037 AGAAATCATGCCTAGAGGTGTT
1 A-AAATTATGCCGA-AGGTCTT
*
7589059 AAAGATTATGCTCGAAAGTCTT
1 AAA-ATTATGC-CGAAGGTCTT
*
7589081 AAAATTATGCTCGGAGGTCTT
1 AAAATTATGC-CGAAGGTCTT
7589102 A
1 A
7589103 CAGAATCAAC
Statistics
Matches: 70, Mismatches: 13, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
21 25 0.36
22 41 0.59
23 4 0.06
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (20 bp):
AAAATTATGCCGAAGGTCTT
Found at i:7589475 original size:128 final size:128
Alignment explanation
Indices: 7589314--7589749 Score: 506
Period size: 128 Copynumber: 3.4 Consensus size: 128
7589304 GTCAACTTCA
* * * * * * **
7589314 TTGAATGTTCC-ACTAATCAGAGGT-TTGTTAACTTTGAAAATATAAAAATCTTTTACCCAAAAA
1 TTGAATGTTCCTCCTAATCAGAGGTGATG-AAACTTTAAAAATTTAAAAATCTTTTGCCCAAAGG
* * *
7589377 TCTTGAAAGTTGTACTCAAAAGCTTTAGAGATTACCCCCGGAGGTCTTACAAATCTCAAAACTTT
65 TCTTGAAAGTTGTGCTCAAAGGCTTTAGAGATTACACCCGGAGGTCTTACAAATCTCAAAA-TTT
* * *
7589442 TT-AATGTTCCTCCTAATCAGAGGTGATGAAACTTTAAAAATTTGAAAATTTTTTGCCCGAAGGT
1 TTGAATGTTCCTCCTAATCAGAGGTGATGAAACTTTAAAAATTTAAAAATCTTTTGCCCAAAGGT
* * * * *
7589506 ATTGAAAGTTGTGCTCAAAGGCTTTAGAGATTACTCCTGAAAGTCTTACAAATCTCAAAATTT
66 CTTGAAAGTTGTGCTCAAAGGCTTTAGAGATTACACCCGGAGGTCTTACAAATCTCAAAATTT
* * * * * ***
7589569 TTGAATGCTT-TTCATAATC-GA-GCGATGAAACTTTAAAAATTTAAAAATATTTTGTCTTGAGG
1 TTGAATG-TTCCTCCTAATCAGAGGTGATGAAACTTTAAAAATTTAAAAATCTTTTGCCCAAAGG
* * *
7589631 TCTTGAAAGTTATGCCCAAAGGCTTTAGAGATTACACCCAGAGGTCTTACAAATCTCAAAATTT
65 TCTTGAAAGTTGTGCTCAAAGGCTTTAGAGATTACACCCGGAGGTCTTACAAATCTCAAAATTT
* * *
7589695 TTGAATGCTCCTCTTAATCAAAGGTGATGAAACTTTAAAAATTTAAAAATCTTTT
1 TTGAATGTTCCTCCTAATCAGAGGTGATGAAACTTTAAAAATTTAAAAATCTTTT
7589750 TGAAAATGGC
Statistics
Matches: 260, Mismatches: 41, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
125 1 0.00
126 104 0.40
127 16 0.06
128 135 0.52
129 4 0.02
ACGTcount: A:0.35, C:0.16, G:0.15, T:0.34
Consensus pattern (128 bp):
TTGAATGTTCCTCCTAATCAGAGGTGATGAAACTTTAAAAATTTAAAAATCTTTTGCCCAAAGGT
CTTGAAAGTTGTGCTCAAAGGCTTTAGAGATTACACCCGGAGGTCTTACAAATCTCAAAATTT
Found at i:7590007 original size:18 final size:18
Alignment explanation
Indices: 7589981--7590020 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
7589971 AAATGATACT
*
7589981 AATGAAAATGCCAATGCG
1 AATGAAAATGCCAATGCA
* *
7589999 AATGTAAATGTCAATGCA
1 AATGAAAATGCCAATGCA
7590017 AATG
1 AATG
7590021 CAAGAATATG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.45, C:0.12, G:0.20, T:0.23
Consensus pattern (18 bp):
AATGAAAATGCCAATGCA
Found at i:7591605 original size:16 final size:16
Alignment explanation
Indices: 7591584--7591625 Score: 57
Period size: 16 Copynumber: 2.6 Consensus size: 16
7591574 GATAAATGAG
*
7591584 TTTTTTTTTTTTTTGC
1 TTTTTTTTTTTTTTAC
**
7591600 TTTTTTTTCATTTTAC
1 TTTTTTTTTTTTTTAC
7591616 TTTTTTTTTT
1 TTTTTTTTTT
7591626 GTGATGCCCC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.05, C:0.07, G:0.02, T:0.86
Consensus pattern (16 bp):
TTTTTTTTTTTTTTAC
Found at i:7593296 original size:16 final size:16
Alignment explanation
Indices: 7593275--7593311 Score: 74
Period size: 16 Copynumber: 2.3 Consensus size: 16
7593265 AGGCCCTAAC
7593275 CAAATTATTCTAAGAG
1 CAAATTATTCTAAGAG
7593291 CAAATTATTCTAAGAG
1 CAAATTATTCTAAGAG
7593307 CAAAT
1 CAAAT
7593312 CTTATTTCGA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.46, C:0.14, G:0.11, T:0.30
Consensus pattern (16 bp):
CAAATTATTCTAAGAG
Found at i:7598074 original size:16 final size:16
Alignment explanation
Indices: 7598053--7598091 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
7598043 CTAGACGGCA
7598053 TTCAAGAATAAATTAT
1 TTCAAGAATAAATTAT
7598069 TTCAAGAATAAATTAT
1 TTCAAGAATAAATTAT
7598085 TTCAAGA
1 TTCAAGA
7598092 TTTTTATACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.36
Consensus pattern (16 bp):
TTCAAGAATAAATTAT
Found at i:7598243 original size:14 final size:15
Alignment explanation
Indices: 7598224--7598265 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
7598214 ACTTTTGGAT
7598224 TTTTAGGTTTTAG-A
1 TTTTAGGTTTTAGAA
*
7598238 TTTTAGGGTTTAGAA
1 TTTTAGGTTTTAGAA
7598253 TTTT-GGATTTTAG
1 TTTTAGG-TTTTAG
7598266 GGTTAGGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
14 14 0.58
15 10 0.42
ACGTcount: A:0.21, C:0.00, G:0.24, T:0.55
Consensus pattern (15 bp):
TTTTAGGTTTTAGAA
Found at i:7598703 original size:23 final size:22
Alignment explanation
Indices: 7598665--7598707 Score: 68
Period size: 23 Copynumber: 1.9 Consensus size: 22
7598655 ACTTTTTTAG
7598665 TATTTTTTTTAGTTATTATTCC
1 TATTTTTTTTAGTTATTATTCC
*
7598687 TATTTTATTTTATTTATTATT
1 TATTTT-TTTTAGTTATTATT
7598708 ATTAAAAACA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 6 0.32
23 13 0.68
ACGTcount: A:0.21, C:0.05, G:0.02, T:0.72
Consensus pattern (22 bp):
TATTTTTTTTAGTTATTATTCC
Found at i:7600542 original size:7 final size:7
Alignment explanation
Indices: 7600532--7600559 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
7600522 TAAAAATAAA
7600532 AATATAT
1 AATATAT
7600539 AATATAT
1 AATATAT
7600546 AATATAT
1 AATATAT
7600553 AATATAT
1 AATATAT
7600560 GTAAAAGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (7 bp):
AATATAT
Found at i:7603682 original size:18 final size:16
Alignment explanation
Indices: 7603659--7603706 Score: 60
Period size: 18 Copynumber: 2.8 Consensus size: 16
7603649 AAAATAATTT
7603659 TTTATATATTTTAATTAA
1 TTTATATATTTTAA-T-A
7603677 TTTATATATATTTAATA
1 TTTATATAT-TTTAATA
7603694 TTATATATATTTT
1 TT-TATATATTTT
7603707 TGTCCTCACT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
17 6 0.21
18 17 0.61
19 5 0.18
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (16 bp):
TTTATATATTTTAATA
Found at i:7603697 original size:16 final size:15
Alignment explanation
Indices: 7603673--7603705 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
7603663 TATATTTTAA
7603673 TTAATTTATATATAT
1 TTAATTTATATATAT
7603688 TTAATATTATATATAT
1 TTAAT-TTATATATAT
7603704 TT
1 TT
7603706 TTGTCCTCAC
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.29
16 12 0.71
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (15 bp):
TTAATTTATATATAT
Found at i:7604862 original size:24 final size:25
Alignment explanation
Indices: 7604812--7604859 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
7604802 ATCTATTTAT
* *
7604812 AAAATATGTTTTTATTGTTTAATTA
1 AAAATATGTATTTATTATTTAATTA
7604837 AAAATA-GTATTTATTAATTTAAT
1 AAAATATGTATTTATT-ATTTAAT
7604860 AAAGTATTAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 8 0.40
25 12 0.60
ACGTcount: A:0.42, C:0.00, G:0.06, T:0.52
Consensus pattern (25 bp):
AAAATATGTATTTATTATTTAATTA
Found at i:7605383 original size:16 final size:15
Alignment explanation
Indices: 7605362--7605434 Score: 67
Period size: 16 Copynumber: 4.6 Consensus size: 15
7605352 GTTCAATTCG
7605362 ATTTTTATTTTGTATT
1 ATTTTTATTTT-TATT
7605378 ATTTTTATTTTTATT
1 ATTTTTATTTTTATT
* *
7605393 TTTTTTGTATTTTATGT
1 ATTTTTAT-TTTTAT-T
7605410 A-TTTTATTATTTATTT
1 ATTTTTATT-TTTA-TT
*
7605426 ATTATTATT
1 ATTTTTATT
7605435 ATGTATTAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 9
0.77 0.08 0.15
Matches are distributed among these distances:
15 11 0.23
16 28 0.60
17 8 0.17
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (15 bp):
ATTTTTATTTTTATT
Found at i:7605385 original size:6 final size:6
Alignment explanation
Indices: 7605376--7605436 Score: 52
Period size: 6 Copynumber: 9.7 Consensus size: 6
7605366 TTATTTTGTA
* *
7605376 TTATTT TTATTT TTATTT TT-TTT GTATTT TATGTATT TTATTAT TTATTT
1 TTATTT TTATTT TTATTT TTATTT TTATTT T-TAT-TT TTATT-T TTATTT
*
7605426 ATTATTA TTAT
1 -TTATTT TTAT
7605437 GTATTAATAT
Statistics
Matches: 45, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
5 4 0.09
6 23 0.51
7 15 0.33
8 3 0.07
ACGTcount: A:0.21, C:0.00, G:0.03, T:0.75
Consensus pattern (6 bp):
TTATTT
Found at i:7605389 original size:17 final size:17
Alignment explanation
Indices: 7605362--7605436 Score: 59
Period size: 17 Copynumber: 4.5 Consensus size: 17
7605352 GTTCAATTCG
7605362 ATTTTTA-TTTTGTATT
1 ATTTTTATTTTTGTATT
*
7605378 ATTTTTATTTTTAT-TT
1 ATTTTTATTTTTGTATT
*
7605394 TTTTTGTATTTTATGTATT
1 ATTTT-TATTTT-TGTATT
*
7605413 -TTATTATTTATT-TATT
1 ATTTTTATTT-TTGTATT
*
7605429 ATTATTAT
1 ATTTTTAT
7605437 GTATTAATAT
Statistics
Matches: 49, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
16 17 0.35
17 24 0.49
18 6 0.12
19 2 0.04
ACGTcount: A:0.21, C:0.00, G:0.04, T:0.75
Consensus pattern (17 bp):
ATTTTTATTTTTGTATT
Found at i:7605425 original size:4 final size:4
Alignment explanation
Indices: 7605403--7605545 Score: 57
Period size: 4 Copynumber: 35.5 Consensus size: 4
7605393 TTTTTTGTAT
* * * *
7605403 TTTA TGTA TTT- TATTA TTTA TTTA -TTA -TTA -TTA TGTA TTAA TATA
1 TTTA TTTA TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * *
7605448 TGTA TATC TTTA TTTA TTTA TTTA TTT- TTTC TGTTA -ATA TTTA TATGTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA T-T-TA
* * *
7605497 TTTTA TTTA TATA ATTA TATA TTTA -TTA TTATA TTATAA TTTA TTTA
1 -TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TT-T-A TTTA TTTA
7605544 TT
1 TT
7605546 ATTATTTTTT
Statistics
Matches: 106, Mismatches: 21, Indels: 24
0.70 0.14 0.16
Matches are distributed among these distances:
3 18 0.17
4 68 0.64
5 13 0.12
6 6 0.06
7 1 0.01
ACGTcount: A:0.30, C:0.01, G:0.03, T:0.65
Consensus pattern (4 bp):
TTTA
Found at i:7605535 original size:25 final size:24
Alignment explanation
Indices: 7605488--7605550 Score: 69
Period size: 25 Copynumber: 2.7 Consensus size: 24
7605478 CTGTTAATAT
* *
7605488 TTATATGTATT-TTATTTATATAA
1 TTATATTTATTATTATATATATAA
7605511 TTATATATTTATTATTATAT-TATAA
1 -T-TATATTTATTATTATATATATAA
7605536 TT-TATTTATTATTAT
1 TTATATTTATTATTAT
7605551 TTTTTTTATC
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
22 13 0.37
23 1 0.03
24 2 0.06
25 14 0.40
26 5 0.14
ACGTcount: A:0.35, C:0.00, G:0.02, T:0.63
Consensus pattern (24 bp):
TTATATTTATTATTATATATATAA
Found at i:7605552 original size:82 final size:79
Alignment explanation
Indices: 7605419--7605571 Score: 188
Period size: 82 Copynumber: 1.9 Consensus size: 79
7605409 TATTTTATTA
*
7605419 TTTATTTATTATTATTATGTATTAATATATGTATATCTTTATTTATTTATTTATTTTT-TC-TGT
1 TTTATTTATTATTATTATGTATTAATATATGTATATATTTATTTATTTATTT-TTTTTATCTTG-
7605482 TAATATTTATATGTAT
64 TAATATTTATATGTAT
* *
7605498 TTTATTTATATAATTATATATTTATTATTATAT-TATA-ATTTATTTATTATTATTTTTTTTATC
1 TTTATTTAT-T-ATTAT-TATGTATTAATATATGTATATATTTATTTA-T-TTATTTTTTTTATC
7605561 TTGTAATATTT
61 TTGTAATATTT
7605572 TTTGGATTTA
Statistics
Matches: 64, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
79 9 0.14
80 9 0.14
81 15 0.23
82 29 0.45
83 2 0.03
ACGTcount: A:0.29, C:0.02, G:0.03, T:0.65
Consensus pattern (79 bp):
TTTATTTATTATTATTATGTATTAATATATGTATATATTTATTTATTTATTTTTTTTATCTTGTA
ATATTTATATGTAT
Found at i:7605630 original size:3 final size:3
Alignment explanation
Indices: 7605624--7605673 Score: 91
Period size: 3 Copynumber: 16.7 Consensus size: 3
7605614 TTCGTTCATC
*
7605624 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTG TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
7605672 TT
1 TT
7605674 TTCTTTTTTG
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 45 1.00
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:7606161 original size:19 final size:20
Alignment explanation
Indices: 7606135--7606182 Score: 73
Period size: 20 Copynumber: 2.5 Consensus size: 20
7606125 TCGGTGAACT
7606135 TTCGATGAAAAA-CTCAG-A
1 TTCGATGAAAAATCTCAGAA
7606153 TTCCGATGAAAAATCTCAGAA
1 TT-CGATGAAAAATCTCAGAA
7606174 TTCGATGAA
1 TTCGATGAA
7606183 TATTCAACCG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
18 2 0.07
19 10 0.37
20 12 0.44
21 3 0.11
ACGTcount: A:0.42, C:0.17, G:0.17, T:0.25
Consensus pattern (20 bp):
TTCGATGAAAAATCTCAGAA
Found at i:7606614 original size:5 final size:5
Alignment explanation
Indices: 7606604--7606678 Score: 64
Period size: 5 Copynumber: 14.4 Consensus size: 5
7606594 TCTTTTTATC
* *
7606604 TTTTA TTTTA TTTTTA CTTTTG TTTTA CTTTT- CTTTA TTTTA TTTT-
1 TTTTA TTTTA -TTTTA -TTTTA TTTTA -TTTTA TTTTA TTTTA TTTTA
*
7606650 TTTTA TTTTCA TTTTTA TTTTG TTTTA TT
1 TTTTA TTTT-A -TTTTA TTTTA TTTTA TT
7606679 ATTCAATTAG
Statistics
Matches: 57, Mismatches: 7, Indels: 12
0.75 0.09 0.16
Matches are distributed among these distances:
4 7 0.12
5 31 0.54
6 15 0.26
7 4 0.07
ACGTcount: A:0.13, C:0.05, G:0.03, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:7606614 original size:12 final size:11
Alignment explanation
Indices: 7606597--7606670 Score: 57
Period size: 12 Copynumber: 6.8 Consensus size: 11
7606587 TTAATATTCT
7606597 TTTTATCTTTTA
1 TTTTAT-TTTTA
7606609 TTTTATTTTTA
1 TTTTATTTTTA
*
7606620 CTTTT-GTTTTA
1 -TTTTATTTTTA
* *
7606631 CTTT-TCTTTA
1 TTTTATTTTTA
7606641 TTTTA-TTTT-
1 TTTTATTTTTA
*
7606650 TTTTATTTTCA
1 TTTTATTTTTA
7606661 TTTTTATTTT
1 -TTTTATTTT
7606671 GTTTTATTAT
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
9 5 0.10
10 16 0.32
11 10 0.20
12 19 0.38
ACGTcount: A:0.14, C:0.07, G:0.01, T:0.78
Consensus pattern (11 bp):
TTTTATTTTTA
Found at i:7606861 original size:58 final size:58
Alignment explanation
Indices: 7606700--7606864 Score: 217
Period size: 58 Copynumber: 2.8 Consensus size: 58
7606690 TTTAAATAAA
* *
7606700 AAAAAAATATTTTTTG-GGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTC
1 AAAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTC
* *
7606758 AAAAAAAAAGCTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
1 --AAAAAAA--TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTC
*
7606821 -CAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTG
7606865 CACAAGAACA
Statistics
Matches: 95, Mismatches: 6, Indels: 10
0.86 0.05 0.09
Matches are distributed among these distances:
58 37 0.39
60 12 0.13
61 6 0.06
62 33 0.35
63 7 0.07
ACGTcount: A:0.43, C:0.08, G:0.13, T:0.36
Consensus pattern (58 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTC
Found at i:7620801 original size:20 final size:18
Alignment explanation
Indices: 7620769--7620807 Score: 60
Period size: 20 Copynumber: 2.1 Consensus size: 18
7620759 TTAAAAAATT
7620769 AAAAAAAAAAAAAAAGGA
1 AAAAAAAAAAAAAAAGGA
7620787 AAAATAAAAATAAAAAAGGA
1 AAAA-AAAAA-AAAAAAGGA
7620807 A
1 A
7620808 TATTCAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 4 0.21
19 5 0.26
20 10 0.53
ACGTcount: A:0.85, C:0.00, G:0.10, T:0.05
Consensus pattern (18 bp):
AAAAAAAAAAAAAAAGGA
Found at i:7621960 original size:44 final size:44
Alignment explanation
Indices: 7621882--7622161 Score: 210
Period size: 44 Copynumber: 6.3 Consensus size: 44
7621872 GATTGTTGAT
*
7621882 GAGCTTTATTTA-CTTTTCAAAGTTGTT-AAGCCTCTATTTAGAG
1 GAGCTTTATTTATTTTTTCAAAGTTGTTGAA-CCTCTATTTAGAG
* * *
7621925 GAGCCTTATTTATTTTTTCAAACTAGTTGAACCTCTATTTAGAG
1 GAGCTTTATTTATTTTTTCAAAGTTGTTGAACCTCTATTTAGAG
* * * *
7621969 AAGCTTTATTTATTTTTTCAAAGTTGTTGAGCCTCTATTTAAAT
1 GAGCTTTATTTATTTTTTCAAAGTTGTTGAACCTCTATTTAGAG
* * * * *
7622013 GAGTTTTATTTATTTTTTTTAAAGTCT-TTGAGCTTCTGTTTAGAG
1 GAGCTTTATTTA-TTTTTTCAAAGT-TGTTGAACCTCTATTTAGAG
* * * * * ** *
7622058 AAGCCTTTTTATTATTTTTT-AAAATTGTTTAGCCTCTGCTTAAAG
1 GAG-CTTTAT-TTATTTTTTCAAAGTTGTTGAACCTCTATTTAGAG
* ** * * * * *
7622103 AAGCCATATTTA-TTTTTCAAAAGTTGTTGAGCCACTACTTAAAA
1 GAGCTTTATTTATTTTTTC-AAAGTTGTTGAACCTCTATTTAGAG
7622147 GAGCTTTATTTATTT
1 GAGCTTTATTTATTT
7622162 CTCAAAAATT
Statistics
Matches: 190, Mismatches: 37, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
42 5 0.03
43 14 0.07
44 105 0.55
45 52 0.27
46 11 0.06
47 3 0.02
ACGTcount: A:0.27, C:0.12, G:0.14, T:0.47
Consensus pattern (44 bp):
GAGCTTTATTTATTTTTTCAAAGTTGTTGAACCTCTATTTAGAG
Found at i:7622069 original size:88 final size:90
Alignment explanation
Indices: 7621886--7622123 Score: 241
Period size: 88 Copynumber: 2.7 Consensus size: 90
7621876 GTTGATGAGC
* *
7621886 TTTATTTACTTTTCAAAGTTGTTAAGCCTCTATTTAGAGGAGCCTTATTTATTTTTTCAAACTAG
1 TTTA-TTATTTTTCAAAGTTGTTAAGCCTCTATTTAAAGGAGCCTTATTTATTTTTTCAAACTAG
*
7621951 TTGAACCTCTATTTAGAGAAGCTTTA
65 TTGAACCTCTATTTAGAGAAGCCTTA
* * ** * * **
7621977 TTTA-T-TTTTTCAAAGTTGTTGAGCCTCTATTTAAATGAGTTTTATTTATTTTTTTTAAAGTCT
1 TTTATTATTTTTCAAAGTTGTTAAGCCTCTATTTAAAGGAGCCTTATTTA-TTTTTTCAAACTAG
* * *
7622040 TTGAGCTTCTGTTTAGAGAAGCCTT-
65 TTGAACCTCTATTTAGAGAAGCCTTA
* * * ** * *
7622065 TTTATTATTTTTTAAAATTGTTTAGCCTCTGCTTAAAGAAGCCATATTTA-TTTTTCAAA
1 TTTATTATTTTTCAAAGTTGTTAAGCCTCTATTTAAAGGAGCCTTATTTATTTTTTCAAA
7622124 AGTTGTTGAG
Statistics
Matches: 119, Mismatches: 25, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
88 49 0.41
89 33 0.28
90 33 0.28
91 4 0.03
ACGTcount: A:0.26, C:0.12, G:0.13, T:0.49
Consensus pattern (90 bp):
TTTATTATTTTTCAAAGTTGTTAAGCCTCTATTTAAAGGAGCCTTATTTATTTTTTCAAACTAGT
TGAACCTCTATTTAGAGAAGCCTTA
Found at i:7624592 original size:123 final size:125
Alignment explanation
Indices: 7624408--7624667 Score: 282
Period size: 123 Copynumber: 2.1 Consensus size: 125
7624398 ATTAGGAAAC
* * * * *
7624408 ACCTTAAATAATCTCTATTATTTTTTTAAAAGGGATTATTTAAGTCATTTTTTGTCTAAAAA-CC
1 ACCTTAAATAATCTCTAATATTTTTTTAAAAGAGATTATTTAAGGCATTTTTAGTCTAAAAATAC
* * * *
7624472 CTTAAATAAATGT-TATTTAAAA-ATAT-ATGA-ATTATTTAAGGTGTCTTTGGTCTAAAAAT
66 CTTAAAT-AAT-TCT-TTTAAAATATATCAAGATATTATTTAAGGTATCTTTGATCCAAAAAT
* * *
7624531 ACCTTAAATAATCTCTAATA-TTTTTTAAAATTATATTATTTAAGGCGTTTTTAGT-TCAAAAAT
1 ACCTTAAATAATCTCTAATATTTTTTTAAAA-GAGATTATTTAAGGCATTTTTAGTCT-AAAAAT
* * * *
7624594 ATCTTAAATAATTCTTTTAAAATGTATCAAGATATTATTTAAGGTATTTTTTATCCAAAAAT
64 ACCTTAAATAATTCTTTTAAAATATATCAAGATATTATTTAAGGTATCTTTGATCCAAAAAT
7624656 ACCTTAAATAAT
1 ACCTTAAATAAT
7624668 GTCTTTTAAA
Statistics
Matches: 114, Mismatches: 16, Indels: 12
0.80 0.11 0.08
Matches are distributed among these distances:
122 19 0.17
123 49 0.43
124 10 0.09
125 36 0.32
ACGTcount: A:0.39, C:0.09, G:0.08, T:0.44
Consensus pattern (125 bp):
ACCTTAAATAATCTCTAATATTTTTTTAAAAGAGATTATTTAAGGCATTTTTAGTCTAAAAATAC
CTTAAATAATTCTTTTAAAATATATCAAGATATTATTTAAGGTATCTTTGATCCAAAAAT
Found at i:7624644 original size:62 final size:62
Alignment explanation
Indices: 7624563--7624740 Score: 182
Period size: 63 Copynumber: 2.9 Consensus size: 62
7624553 TTTTAAAATT
* *
7624563 ATATTATTTAAGGCGTTTTTAGTTCAAAAATATCTTAAATAATTCTTTTAAAATGTATCAAG
1 ATATTATTTAAGGTGTTTTTAGTTCAAAAATATCTTAAATAATTCTTTTAAAATATATCAAG
* * * * *
7624625 ATATTATTTAAGGTATTTTTTA-TCCAAAAATACCTTAAATAATGTCTTTTAAAAAATATTAAG
1 ATATTATTTAAGGT-GTTTTTAGTTCAAAAATATCTTAAATAAT-TCTTTTAAAATATATCAAG
** * * * * *
7624688 GGATTATTTGAGATGTTTTTTG-TCAAAAAATGTCTTAAATAA-TCTCTTAAAAT
1 ATATTATTTAAGGTGTTTTTAGTTC-AAAAATATCTTAAATAATTCTTTTAAAAT
7624741 TTTTTGAAGG
Statistics
Matches: 94, Mismatches: 18, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
61 9 0.10
62 38 0.40
63 47 0.50
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.43
Consensus pattern (62 bp):
ATATTATTTAAGGTGTTTTTAGTTCAAAAATATCTTAAATAATTCTTTTAAAATATATCAAG
Found at i:7625138 original size:22 final size:25
Alignment explanation
Indices: 7625099--7625151 Score: 76
Period size: 24 Copynumber: 2.2 Consensus size: 25
7625089 TCAATGTTTA
7625099 TTTTTTAGGATTACTTA-TAAGATT
1 TTTTTTAGGATTACTTATTAAGATT
7625123 TTTTTTAGGA-TA-TTATTTAAGATT
1 TTTTTTAGGATTACTTA-TTAAGATT
7625147 TTTTT
1 TTTTT
7625152 GTCAAAAAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
22 3 0.11
23 2 0.07
24 22 0.81
ACGTcount: A:0.26, C:0.02, G:0.11, T:0.60
Consensus pattern (25 bp):
TTTTTTAGGATTACTTATTAAGATT
Done.