Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 36 of 195
Found at i:7759037 original size:73 final size:73
Alignment explanation
Indices: 7758932--7759503 Score: 417
Period size: 73 Copynumber: 7.8 Consensus size: 73
7758922 TTGATTTGCC
* * * * *
7758932 GTGTTATCCCAGTCAATTCTATACTTT-TCGACTTGCAGTGTTATCTCAGTCGATTCTTTAATTT
1 GTGTTGTCCCAATCAATTCTTTA-TTTCTCGACTTGCGGTGTTGTCTCAGTCGATTCTTTAATTT
7758996 CGA-TTCGTG
65 CGACTT-GTG
* * * * * *
7759005 GTGTTGTCCCAATCGATTCTTTGTTTCTCGACTTGCGGTGTTGTCCCAATTGATTCTTTAATTTT
1 GTGTTGTCCCAATCAATTCTTTATTTCTCGACTTGCGGTGTTGTCTCAGTCGATTCTTTAATTTC
7759070 GACTTGCT-
66 GACTTG-TG
* * * * * * *
7759078 GTGTTGTCCCAGTCGATTCTTCAATTT-T-GACTTGCGATGTTATCTCGGTCGATTCTTTATTTC
1 GTGTTGTCCCAATCAATTCTT-TATTTCTCGACTTGCGGTGTTGTCTCAGTCGATTCTTTAATT-
* *
7759141 TCAACTTGCG
64 TCGACTTGTG
*** * * *
7759151 GTGTTGTCTTGATCAATTCTTTAATTT-T-GACTTACAGTGTTGTCTCAGTCGATTCTTTACTTT
1 GTGTTGTCCCAATCAATTCTTT-ATTTCTCGACTTGCGGTGTTGTCTCAGTCGATTCTTTA-ATT
* * **
7759214 TTGAGTTACG
64 TCGACTTGTG
* * * * * * * *
7759224 ATGTTGTCCCGATCAATTCTTTATTTCTCGACTCGTGGTGTTGTCCCAATCGATTTTTTAATTTT
1 GTGTTGTCCCAATCAATTCTTTATTTCTCGACTTGCGGTGTTGTCTCAGTCGATTCTTTAATTTC
7759289 GACTTGTG
66 GACTTGTG
* * ** * *
7759297 GTGTTGTCCTAATCAATTATTTATTTCTCGACTTATGGTGTTGTCCCAGTCGATTCTTTACTTTT
1 GTGTTGTCCCAATCAATTCTTTATTTCTCGACTTGCGGTGTTGTCTCAGTCGATTCTTTA-ATTT
* *
7759362 CAACTTGCG
65 CGACTTGTG
* * * * ** *
7759371 ATGTTGTCCCGATCGATTCTTT-TCTTTTCGACTTGCGGTGTTGTCTTGGTCGATTCTTTATCTT
1 GTGTTGTCCCAATCAATTCTTTAT-TTCTCGACTTGCGGTGTTGTCTCAGTCGATTCTTTA-ATT
*
7759435 TTGACTTGTG
64 TCGACTTGTG
* * ** ** * *
7759445 GTGCTATCCCGGTTGATTCTTTATTTCTCGATTTGTGGTGTTGT-TC-GATCGATTCTTTA
1 GTGTTGTCCCAATCAATTCTTTATTTCTCGACTTGCGGTGTTGTCTCAG-TCGATTCTTTA
7759504 CTTTTTGACT
Statistics
Matches: 395, Mismatches: 90, Indels: 28
0.77 0.18 0.05
Matches are distributed among these distances:
72 35 0.09
73 227 0.57
74 132 0.33
75 1 0.00
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.47
Consensus pattern (73 bp):
GTGTTGTCCCAATCAATTCTTTATTTCTCGACTTGCGGTGTTGTCTCAGTCGATTCTTTAATTTC
GACTTGTG
Found at i:7759096 original size:389 final size:388
Alignment explanation
Indices: 7758263--7759098 Score: 1122
Period size: 389 Copynumber: 2.1 Consensus size: 388
7758253 TTCGTTTCAT
* * * *
7758263 GGTGTTATCCCAATTGATTTTTTATTTTTTGACTTGCAGTGTTATCCTGATCGATTTTTTATTTC
1 GGTGTTATCCCAATTGATTCTTTA-ATTTTGACTTGCAGTGTTATCCCGATCGATTCTTTATTTC
* * *
7758328 TCAACTTGCGGTGTTGTCCCAGTTAATTCTTTAATTTTGACTTGCAGTGTTGTCCCGATCGATTA
65 TCAACTTGCAGTGTTGTCCCAGTTAATTCTTTAATTTCGACTTGCAGTGTTGACCCGATCGATTA
* * *
7758393 TTTACTTTTCGATTCGTGGTGTTATCCTGATCGATTCTTTATTTTTCAACTTATGGTGTTATCTC
130 TTTACTTTTCGATTCGTGATGTTATCCCGATCGATTCTTTATTTTTCAACTTACGGTGTTATCTC
* * * *
7758458 GATCAATTCTGTAAGACCTCTGGGCATAATTTCTAAGACCTTCGGGCATAATCTTTAAGACCTCC
195 GATCAATTCTATAAGACCTCTGGACATAATTTCTAAGACCTTCAGGCATAATCCTTAAGACCTCC
* * * * * * * *
7758523 GGGTATAATTTTGATTTGGAGTGTTATCCCGGTCGATTCTTTACTTTTTGACTTGCAGTGTTATC
260 AGGCACAATTTTGATTTGCAGTGTTATCCCAGTCAATTCTATACTTTTCGACTTGCAGTGTTATC
* * ** *
7758588 CTAGTCGATTTTTTAATTTTGATTCGCGATGTTGTCCTGATTGATTCTTTATTTCTCAACTTGC
325 CTAGTCGATTCTTTAATTTCGATTCGCGATGTTGTCCCAATCGATTCTTTATTTCTCAACTTGC
* * * *
7758652 GGTGTTATCCTAGTTGATTCTTTAATTTTGACTTGCAGTGTTCTCTCGATCGATTCTTTATTTCT
1 GGTGTTATCCCAATTGATTCTTTAATTTTGACTTGCAGTGTTATCCCGATCGATTCTTTATTTCT
* * *
7758717 CGACTTGTAGTGTTGTCCCAGTTAATTCTTTAATTTCGACTTGCAGTGTT-ACCTCGATCGATTC
66 CAACTTGCAGTGTTGTCCCAGTTAATTCTTTAATTTCGACTTGCAGTGTTGACC-CGATCGATTA
* * **
7758781 TTTACTTTTCGATTTGTGATGTTATCCCGATCGATTTTTTATTTTTTTGACTTACGGTGTTATC-
130 TTTACTTTTCGATTCGTGATGTTATCCCGATCGATTCTTTA-TTTTTCAACTTACGGTGTTATCT
* * * * * *
7758845 CTGATCGATTCTATAAGACCTTTGGACATGATTTTTAAGATCTTCAGGCATAATCCTTAATACCT
194 C-GATCAATTCTATAAGACCTCTGGACATAATTTCTAAGACCTTCAGGCATAATCCTTAAGACCT
*
7758910 CCAGGCACAATTTTGATTTGCCGTGTTATCCCAGTCAATTCTATACTTTTCGACTTGCAGTGTTA
258 CCAGGCACAATTTTGATTTGCAGTGTTATCCCAGTCAATTCTATACTTTTCGACTTGCAGTGTTA
* * * *
7758975 T-CTCAGTCGATTCTTTAATTTCGATTCGTGGTGTTGTCCCAATCGATTCTTTGTTTCTCGACTT
323 TCCT-AGTCGATTCTTTAATTTCGATTCGCGATGTTGTCCCAATCGATTCTTTATTTCTCAACTT
7759039 GC
387 GC
* * *
7759041 GGTGTTGTCCCAATTGATTCTTTAATTTTGACTTGCTGTGTTGTCCC-AGTCGATTCTT
1 GGTGTTATCCCAATTGATTCTTTAATTTTGACTTGCAGTGTTATCCCGA-TCGATTCTT
7759099 CAATTTTGAC
Statistics
Matches: 387, Mismatches: 55, Indels: 10
0.86 0.12 0.02
Matches are distributed among these distances:
387 2 0.01
388 132 0.34
389 253 0.65
ACGTcount: A:0.19, C:0.19, G:0.17, T:0.45
Consensus pattern (388 bp):
GGTGTTATCCCAATTGATTCTTTAATTTTGACTTGCAGTGTTATCCCGATCGATTCTTTATTTCT
CAACTTGCAGTGTTGTCCCAGTTAATTCTTTAATTTCGACTTGCAGTGTTGACCCGATCGATTAT
TTACTTTTCGATTCGTGATGTTATCCCGATCGATTCTTTATTTTTCAACTTACGGTGTTATCTCG
ATCAATTCTATAAGACCTCTGGACATAATTTCTAAGACCTTCAGGCATAATCCTTAAGACCTCCA
GGCACAATTTTGATTTGCAGTGTTATCCCAGTCAATTCTATACTTTTCGACTTGCAGTGTTATCC
TAGTCGATTCTTTAATTTCGATTCGCGATGTTGTCCCAATCGATTCTTTATTTCTCAACTTGC
Found at i:7759301 original size:110 final size:109
Alignment explanation
Indices: 7758927--7759521 Score: 491
Period size: 110 Copynumber: 5.4 Consensus size: 109
7758917 CAATTTTGAT
* * * * * * * *
7758927 TTGCCGTGTTATCCCAGTCAATTCTATACTTTTCGACTTGCAGTGTTATCTCAGTCGATTCTTTA
1 TTGCGGTGTTGTCCCAATCGATTCTTTAATTTT-GACTTGCGGTGTTGTCTCAGTCGATTCTTTA
* * * * * *
7758992 ATTTCGA-TT-CGTGGTGTTGTCCCAATCGATTCTTTGTTTCTCGAC
65 TTTTTGACTTAC--GATGTTGTCCCGATCGATTCTTTATTTCTCAAC
* * * * *
7759037 TTGCGGTGTTGTCCCAATTGATTCTTTAATTTTGACTTGCTGTGTTGTCCCAGTCGATTCTTCAA
1 TTGCGGTGTTGTCCCAATCGATTCTTTAATTTTGACTTGCGGTGTTGTCTCAGTCGATTCTTTAT
* * * *
7759102 TTTTGACTTGCGATGTTATCTCGGTCGATTCTTTATTTCTCAAC
66 TTTTGACTTACGATGTTGTCCCGATCGATTCTTTATTTCTCAAC
*** * * *
7759146 TTGCGGTGTTGTCTTGATCAATTCTTTAATTTTGACTTACAGTGTTGTCTCAGTCGATTCTTTAC
1 TTGCGGTGTTGTCCCAATCGATTCTTTAATTTTGACTTGCGGTGTTGTCTCAGTCGATTCTTTA-
* * *
7759211 TTTTTGAGTTACGATGTTGTCCCGATCAATTCTTTATTTCTCGAC
65 TTTTTGACTTACGATGTTGTCCCGATCGATTCTTTATTTCTCAAC
* * * * * * *
7759256 TCGTGGTGTTGTCCCAATCGATTTTTTAATTTTGACTTGTGGTGTTGTC-CTAATCAATTATTTA
1 TTGCGGTGTTGTCCCAATCGATTCTTTAATTTTGACTTGCGGTGTTGTCTC-AGTCGATTCTTTA
* * *
7759320 TTTCTCGACTTATGGTGTTGTCCC-AGTCGATTCTTTACTTT-TCAAC
65 TTT-TTGACTTACGATGTTGTCCCGA-TCGATTCTTTA-TTTCTCAAC
* * ** **
7759366 TTGCGATGTTGTCCCGATCGATTCTTTTCTTTTCGACTTGCGGTGTTGTCTTGGTCGATTCTTTA
1 TTGCGGTGTTGTCCCAATCGATTCTTTAATTTT-GACTTGCGGTGTTGTCTCAGTCGATTCTTTA
** * * * * * * *
7759431 TCTTTTGACTTGTGGTGCTATCCCGGTTGATTCTTTATTTCTCGAT
65 T-TTTTGACTTACGATGTTGTCCCGATCGATTCTTTATTTCTCAAC
* * * * *
7759477 TTGTGGTGTTGT-TCGATCGATTCTTTACTTTTTGACTAGCGGTGT
1 TTGCGGTGTTGTCCCAATCGATTCTTTA-ATTTTGACTTGCGGTGT
7759522 CGTCCCGATC
Statistics
Matches: 390, Mismatches: 82, Indels: 26
0.78 0.16 0.05
Matches are distributed among these distances:
109 119 0.31
110 197 0.51
111 72 0.18
112 2 0.01
ACGTcount: A:0.15, C:0.19, G:0.19, T:0.47
Consensus pattern (109 bp):
TTGCGGTGTTGTCCCAATCGATTCTTTAATTTTGACTTGCGGTGTTGTCTCAGTCGATTCTTTAT
TTTTGACTTACGATGTTGTCCCGATCGATTCTTTATTTCTCAAC
Found at i:7759442 original size:37 final size:36
Alignment explanation
Indices: 7758920--7759531 Score: 375
Period size: 37 Copynumber: 16.7 Consensus size: 36
7758910 CCAGGCACAA
* * * * *
7758920 TTTTGATTTGCCGTGTTATCCC-AGTCAATTCTATAC
1 TTTTGACTTGCGGTGTTGTCCCGA-TCGATTCTTTAC
* * * *
7758956 TTTTCGACTTGCAGTGTTATCTC-AGTCGATTCTTTAA
1 TTTT-GACTTGCGGTGTTGTCCCGA-TCGATTCTTTAC
* * * *
7758993 TTTCGA-TTCGTGGTGTTGTCCCAATCGATTCTTT-G
1 TTTTGACTT-GCGGTGTTGTCCCGATCGATTCTTTAC
* * *
7759028 TTTCTCGACTTGCGGTGTTGTCCCAATTGATTCTTTAA
1 TTT-T-GACTTGCGGTGTTGTCCCGATCGATTCTTTAC
* * *
7759066 TTTTGACTTGCTGTGTTGTCCC-AGTCGATTCTTCAA
1 TTTTGACTTGCGGTGTTGTCCCGA-TCGATTCTTTAC
* * * *
7759102 TTTTGACTTGCGATGTTATCTCGGTCGATTCTTTA-
1 TTTTGACTTGCGGTGTTGTCCCGATCGATTCTTTAC
* ** * *
7759137 TTTCTCAACTTGCGGTGTTGTCTTGATCAATTCTTTAA
1 TTT-T-GACTTGCGGTGTTGTCCCGATCGATTCTTTAC
* * *
7759175 TTTTGACTTACAGTGTTGTCTC-AGTCGATTCTTTAC
1 TTTTGACTTGCGGTGTTGTCCCGA-TCGATTCTTTAC
* * * *
7759211 TTTTTGAGTTACGATGTTGTCCCGATCAATTCTTTA-
1 -TTTTGACTTGCGGTGTTGTCCCGATCGATTCTTTAC
* * * * *
7759247 TTTCTCGACTCGTGGTGTTGTCCCAATCGATTTTTTAA
1 TTT-T-GACTTGCGGTGTTGTCCCGATCGATTCTTTAC
* ** * *
7759285 TTTTGACTTGTGGTGTTGTCCTAATCAATTATTTA-
1 TTTTGACTTGCGGTGTTGTCCCGATCGATTCTTTAC
**
7759320 TTTCTCGACTTATGGTGTTGTCCC-AGTCGATTCTTTAC
1 TTT-T-GACTTGCGGTGTTGTCCCGA-TCGATTCTTTAC
* * *
7759358 TTTTCAACTTGCGATGTTGTCCCGATCGATTCTTTTC
1 TTTT-GACTTGCGGTGTTGTCCCGATCGATTCTTTAC
** *
7759395 TTTTCGACTTGCGGTGTTGTCTTGGTCGATTCTTTATC
1 TTTT-GACTTGCGGTGTTGTCCCGATCGATTCTTTA-C
* * * * *
7759433 TTTTGACTTGTGGTGCTATCCCGGTTGATTCTTTA-
1 TTTTGACTTGCGGTGTTGTCCCGATCGATTCTTTAC
* * *
7759468 TTTCTCGATTTGTGGTGTTGT-TCGATCGATTCTTTAC
1 TTT-T-GACTTGCGGTGTTGTCCCGATCGATTCTTTAC
* *
7759505 TTTTTGACTAGCGGTGTCGTCCCGATC
1 -TTTTGACTTGCGGTGTTGTCCCGATC
7759532 ATTTTCTTTA
Statistics
Matches: 461, Mismatches: 86, Indels: 57
0.76 0.14 0.09
Matches are distributed among these distances:
35 19 0.04
36 159 0.34
37 259 0.56
38 24 0.05
ACGTcount: A:0.15, C:0.20, G:0.19, T:0.47
Consensus pattern (36 bp):
TTTTGACTTGCGGTGTTGTCCCGATCGATTCTTTAC
Found at i:7759769 original size:16 final size:17
Alignment explanation
Indices: 7759739--7759780 Score: 54
Period size: 16 Copynumber: 2.6 Consensus size: 17
7759729 AAGTTATGTT
7759739 TATTAAT-ATTAAAAT-
1 TATTAATAATTAAAATA
7759754 TAATTAATAATT-AAATA
1 T-ATTAATAATTAAAATA
7759771 TATTAATAAT
1 TATTAATAAT
7759781 AATAAATACA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
15 1 0.04
16 19 0.79
17 4 0.17
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (17 bp):
TATTAATAATTAAAATA
Found at i:7761479 original size:14 final size:14
Alignment explanation
Indices: 7761405--7761487 Score: 69
Period size: 14 Copynumber: 5.9 Consensus size: 14
7761395 CTTCAATTAA
*
7761405 AAAATCTAAACCCT
1 AAAATCCAAACCCT
* *
7761419 AAAACCCTAACCCT
1 AAAATCCAAACCCT
**
7761433 AAAAT-CAAAAACT
1 AAAATCCAAACCCT
* *
7761446 TAAAGCCAAACCCAT
1 AAAATCCAAACCC-T
7761461 AAAATCCAAACCCT
1 AAAATCCAAACCCT
*
7761475 TAAATCCTAAACC
1 AAAATCC-AAACC
7761488 TCAAACACTA
Statistics
Matches: 52, Mismatches: 14, Indels: 5
0.73 0.20 0.07
Matches are distributed among these distances:
13 8 0.15
14 27 0.52
15 17 0.33
ACGTcount: A:0.51, C:0.31, G:0.01, T:0.17
Consensus pattern (14 bp):
AAAATCCAAACCCT
Found at i:7761532 original size:30 final size:30
Alignment explanation
Indices: 7761496--7761600 Score: 99
Period size: 30 Copynumber: 3.6 Consensus size: 30
7761486 CCTCAAACAC
* * * *
7761496 TAAAATCAAAAACTTACACCATCCAAATCT
1 TAAAATCAAAAACCTAAAACATCCAAACCT
* *
7761526 TAAAATCAAAATCCTAAAATATCCAAACCT
1 TAAAATCAAAAACCTAAAACATCCAAACCT
* * *
7761556 TAAAATCAAAACCCT-AATC-CCCAAACCT
1 TAAAATCAAAAACCTAAAACATCCAAACCT
*
7761584 T-AAATCAAAACCCTAAA
1 TAAAATCAAAAACCTAAA
7761601 CTTTTCGAAC
Statistics
Matches: 64, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
27 13 0.20
28 11 0.17
29 2 0.03
30 38 0.59
ACGTcount: A:0.51, C:0.28, G:0.00, T:0.21
Consensus pattern (30 bp):
TAAAATCAAAAACCTAAAACATCCAAACCT
Found at i:7768198 original size:20 final size:22
Alignment explanation
Indices: 7768173--7768220 Score: 64
Period size: 20 Copynumber: 2.3 Consensus size: 22
7768163 TAATAATTTT
*
7768173 TAAAAATTTTAATT-TT-TTAA
1 TAAAAAATTTAATTATTATTAA
*
7768193 TAAAAAATTTATTTATTATTAA
1 TAAAAAATTTAATTATTATTAA
7768215 TAAAAA
1 TAAAAA
7768221 CAAGTGCGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 12 0.50
21 2 0.08
22 10 0.42
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
TAAAAAATTTAATTATTATTAA
Found at i:7768574 original size:14 final size:14
Alignment explanation
Indices: 7768555--7768587 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
7768545 TTAACTTATC
7768555 TTAATTTATTTTTA
1 TTAATTTATTTTTA
7768569 TTAATTTATTTTTA
1 TTAATTTATTTTTA
7768583 TTAAT
1 TTAAT
7768588 CACTAGTTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (14 bp):
TTAATTTATTTTTA
Found at i:7770868 original size:29 final size:28
Alignment explanation
Indices: 7770836--7770901 Score: 78
Period size: 29 Copynumber: 2.3 Consensus size: 28
7770826 CTTTGAATTA
* *
7770836 TTTTATTTATTTTAAATAAGTTATTATAT
1 TTTTATTTA-TTTAAATAAATCATTATAT
*
7770865 TTTTATTGTATTTAAATAAATCCTTATAT
1 TTTTATT-TATTTAAATAAATCATTATAT
*
7770894 TTTGATTT
1 TTTTATTT
7770902 GTATCTATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
28 1 0.03
29 29 0.91
30 2 0.06
ACGTcount: A:0.32, C:0.03, G:0.05, T:0.61
Consensus pattern (28 bp):
TTTTATTTATTTAAATAAATCATTATAT
Found at i:7779609 original size:15 final size:15
Alignment explanation
Indices: 7779589--7779617 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
7779579 TTTTATTCTC
7779589 TTGTGGCTTGTGACT
1 TTGTGGCTTGTGACT
7779604 TTGTGGCTTGTGAC
1 TTGTGGCTTGTGAC
7779618 ATTGGTGTGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.07, C:0.14, G:0.34, T:0.45
Consensus pattern (15 bp):
TTGTGGCTTGTGACT
Found at i:7779757 original size:18 final size:18
Alignment explanation
Indices: 7779734--7779771 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
7779724 AGAAACATCG
7779734 GTATGAAAATTTGATGAT
1 GTATGAAAATTTGATGAT
7779752 GTATGAAAATTTGATGAT
1 GTATGAAAATTTGATGAT
7779770 GT
1 GT
7779772 TTTGATATTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.37, C:0.00, G:0.24, T:0.39
Consensus pattern (18 bp):
GTATGAAAATTTGATGAT
Found at i:7780173 original size:16 final size:16
Alignment explanation
Indices: 7780148--7780180 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
7780138 GAAAAGATCA
7780148 ATCCCCTCAGGGAATC
1 ATCCCCTCAGGGAATC
*
7780164 ATCCCTTCAGGGAATC
1 ATCCCCTCAGGGAATC
7780180 A
1 A
7780181 CTAAAAGAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.27, C:0.33, G:0.18, T:0.21
Consensus pattern (16 bp):
ATCCCCTCAGGGAATC
Found at i:7788639 original size:41 final size:41
Alignment explanation
Indices: 7788582--7788665 Score: 159
Period size: 41 Copynumber: 2.0 Consensus size: 41
7788572 GCATATTTAC
7788582 ATCCTGAAATTATAGGTGAGCATTAATAAGTTGGAATCCAT
1 ATCCTGAAATTATAGGTGAGCATTAATAAGTTGGAATCCAT
*
7788623 ATCCTGAAATTATAGGTGAGTATTAATAAGTTGGAATCCAT
1 ATCCTGAAATTATAGGTGAGCATTAATAAGTTGGAATCCAT
7788664 AT
1 AT
7788666 AATTAATCAA
Statistics
Matches: 42, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.37, C:0.11, G:0.19, T:0.33
Consensus pattern (41 bp):
ATCCTGAAATTATAGGTGAGCATTAATAAGTTGGAATCCAT
Found at i:7788912 original size:7 final size:7
Alignment explanation
Indices: 7788885--7788944 Score: 59
Period size: 7 Copynumber: 8.7 Consensus size: 7
7788875 ATCATATTTG
7788885 TAATATA
1 TAATATA
*
7788892 TAATTTA
1 TAATATA
**
7788899 TTTTATA
1 TAATATA
7788906 TAATATA
1 TAATATA
7788913 TAATATA
1 TAATATA
7788920 -AATATA
1 TAATATA
* *
7788926 AAATATC
1 TAATATA
*
7788933 TTATATA
1 TAATATA
7788940 TAATA
1 TAATA
7788945 ATATGAATAA
Statistics
Matches: 41, Mismatches: 11, Indels: 2
0.76 0.20 0.04
Matches are distributed among these distances:
6 6 0.15
7 35 0.85
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.47
Consensus pattern (7 bp):
TAATATA
Found at i:7792059 original size:21 final size:21
Alignment explanation
Indices: 7792035--7792074 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
7792025 TTTTTTATTT
* *
7792035 TTATCTTATATATTTATATAA
1 TTATCTTATAAATATATATAA
*
7792056 TTATTTTATAAATATATAT
1 TTATCTTATAAATATATAT
7792075 TAAAAAATAT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.40, C:0.03, G:0.00, T:0.57
Consensus pattern (21 bp):
TTATCTTATAAATATATATAA
Found at i:7792084 original size:14 final size:15
Alignment explanation
Indices: 7792065--7792105 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
7792055 ATTATTTTAT
7792065 AAATATATATTAA-A
1 AAATATATATTAATA
*
7792079 AAATATATTTTTAATA
1 AAATATA-TATTAATA
7792095 AAA-ATATATTA
1 AAATATATATTA
7792106 GTTCTAATTA
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 11 0.48
15 8 0.35
16 4 0.17
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
AAATATATATTAATA
Found at i:7801347 original size:18 final size:18
Alignment explanation
Indices: 7801307--7801346 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
7801297 TAATTCCAAA
7801307 ATTTTATATTTTTATTAT
1 ATTTTATATTTTTATTAT
7801325 ATTTTATATATTTT-TTA-
1 ATTTTATAT-TTTTATTAT
7801342 ATTTT
1 ATTTT
7801347 TGGATTGAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 5 0.24
18 12 0.57
19 4 0.19
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (18 bp):
ATTTTATATTTTTATTAT
Found at i:7802740 original size:20 final size:18
Alignment explanation
Indices: 7802709--7802746 Score: 58
Period size: 20 Copynumber: 2.0 Consensus size: 18
7802699 CAATCATCTA
7802709 TTTTTTCAATTTTTTATT
1 TTTTTTCAATTTTTTATT
7802727 TTTTTTCATTATTTTTTATT
1 TTTTTTCA--ATTTTTTATT
7802747 CGTAAAAAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 8 0.44
20 10 0.56
ACGTcount: A:0.16, C:0.05, G:0.00, T:0.79
Consensus pattern (18 bp):
TTTTTTCAATTTTTTATT
Found at i:7803038 original size:81 final size:82
Alignment explanation
Indices: 7802900--7803147 Score: 315
Period size: 82 Copynumber: 3.0 Consensus size: 82
7802890 AGTAAGCAAA
* * * *
7802900 GCTCCTTTAAACAGAGGCAATAAAC-TTTGAG-AAATAAATGGCTTCTCTGAATAGAGGCAACGA
1 GCTCCTTTGAATAGAGGCAACAAACTTTTGAGAAAATAAATGGCTTATCTGAATAGAGGCAACGA
*
7802963 ACTTT-GAAAATAAACG
66 ACTTTAGAAAATAAATG
* *
7802979 GCTCCTTTGAATAAAGGCAACAAACTTTTGAGAAAATAAATAGCTTATCTGAATAGAGGCAACGA
1 GCTCCTTTGAATAGAGGCAACAAACTTTTGAGAAAATAAATGGCTTATCTGAATAGAGGCAACGA
*
7803044 ACTTTGAGAAAATAATTG
66 ACTTT-AGAAAATAAATG
* * * * * * *
7803062 GCTCCTCTGAATAGAGGCAACAAACTTTT-AAAAAATAAATGGCTCATCTAAATAAAGACAATGA
1 GCTCCTTTGAATAGAGGCAACAAACTTTTGAGAAAATAAATGGCTTATCTGAATAGAGGCAACGA
7803126 ACTTCTAGAAAATAAATG
66 ACTT-TAGAAAATAAATG
7803144 GCTC
1 GCTC
7803148 TTCTAAATAG
Statistics
Matches: 146, Mismatches: 18, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 21 0.14
80 6 0.04
81 35 0.24
82 47 0.32
83 37 0.25
ACGTcount: A:0.42, C:0.16, G:0.17, T:0.25
Consensus pattern (82 bp):
GCTCCTTTGAATAGAGGCAACAAACTTTTGAGAAAATAAATGGCTTATCTGAATAGAGGCAACGA
ACTTTAGAAAATAAATG
Found at i:7803071 original size:41 final size:41
Alignment explanation
Indices: 7802912--7803158 Score: 259
Period size: 41 Copynumber: 6.1 Consensus size: 41
7802902 TCCTTTAAAC
* *
7802912 AGAGGCAATAAACTTTGAG-AAATAAATGGCTTCTCTGAAT
1 AGAGGCAACAAACTTTGAGAAAATAAATGGCTCCTCTGAAT
* * *
7802952 AGAGGCAACGAACTTT--GAAAATAAACGGCTCCTTTGAAT
1 AGAGGCAACAAACTTTGAGAAAATAAATGGCTCCTCTGAAT
* * **
7802991 AAAGGCAACAAACTTTTGAGAAAATAAATAGCTTATCTGAAT
1 AGAGGCAACAAAC-TTTGAGAAAATAAATGGCTCCTCTGAAT
* *
7803033 AGAGGCAACGAACTTTGAGAAAATAATTGGCTCCTCTGAAT
1 AGAGGCAACAAACTTTGAGAAAATAAATGGCTCCTCTGAAT
* * * *
7803074 AGAGGCAACAAACTTTTAAAAAATAAATGGCTCATCTAAAT
1 AGAGGCAACAAACTTTGAGAAAATAAATGGCTCCTCTGAAT
* * ** * *
7803115 AAAGACAATGAACTTCT-AGAAAATAAATGGCTCTTCTAAAT
1 AGAGGCAACAAACTT-TGAGAAAATAAATGGCTCCTCTGAAT
7803156 AGA
1 AGA
7803159 CTCTTCTAAA
Statistics
Matches: 171, Mismatches: 31, Indels: 9
0.81 0.15 0.04
Matches are distributed among these distances:
38 1 0.01
39 29 0.17
40 17 0.10
41 94 0.55
42 30 0.18
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (41 bp):
AGAGGCAACAAACTTTGAGAAAATAAATGGCTCCTCTGAAT
Found at i:7803164 original size:14 final size:14
Alignment explanation
Indices: 7803145--7803172 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
7803135 AAATAAATGG
7803145 CTCTTCTAAATAGA
1 CTCTTCTAAATAGA
7803159 CTCTTCTAAATAGA
1 CTCTTCTAAATAGA
7803173 GGCAACGAAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.21, G:0.07, T:0.36
Consensus pattern (14 bp):
CTCTTCTAAATAGA
Found at i:7803233 original size:53 final size:53
Alignment explanation
Indices: 7803099--7803259 Score: 191
Period size: 53 Copynumber: 3.0 Consensus size: 53
7803089 TTAAAAAATA
* *
7803099 AATGGCTCATCTAAATA-AAGACAATGAACTTCTAGAAAATAAATGGCTCTTCT
1 AATGGCTCATCTAAATAGAAGA-AACGAACTTCTAGAAAATAAATGGCTCCTCT
* * * * *
7803152 AAATAGACTCTTCTAAATAGAGGCAACGAACTTCTAAAAAAATAAATGGCTCCTCT
1 -AAT-GGCTCATCTAAATAGAAGAAACGAACTTCT-AGAAAATAAATGGCTCCTCT
* *
7803208 -ATGGCTCCTCTAAATAGAAGAAACGAACTTTTAGAAAATAAATGGCTCCTCT
1 AATGGCTCATCTAAATAGAAGAAACGAACTTCTAGAAAATAAATGGCTCCTCT
7803260 GAATAGAGGC
Statistics
Matches: 91, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
52 19 0.21
53 25 0.27
54 5 0.05
55 22 0.24
56 20 0.22
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.27
Consensus pattern (53 bp):
AATGGCTCATCTAAATAGAAGAAACGAACTTCTAGAAAATAAATGGCTCCTCT
Found at i:7803265 original size:41 final size:41
Alignment explanation
Indices: 7803208--7803536 Score: 410
Period size: 41 Copynumber: 8.0 Consensus size: 41
7803198 TGGCTCCTCT
* * *
7803208 ATGGCTCCTCTAAATAGAAGAAACGAACTTTTAGAAAATAA
1 ATGGCTCCTCTGAATAGAGGCAACGAACTTTTAGAAAATAA
*
7803249 ATGGCTCCTCTGAATAGAGGCAACGAACTTTAAGAAAATAA
1 ATGGCTCCTCTGAATAGAGGCAACGAACTTTTAGAAAATAA
* * * *
7803290 TTGGCTCCTTTGAATAGAGACAACGAACTTTGAGAAAATAA
1 ATGGCTCCTCTGAATAGAGGCAACGAACTTTTAGAAAATAA
* *
7803331 ATGGCTCCTCTGAATAGAGGCAATGAACTTCTAGAAAATAA
1 ATGGCTCCTCTGAATAGAGGCAACGAACTTTTAGAAAATAA
* * * * *
7803372 ATGGTTTCTATGAATAAAGGCAACAAACTTTTGAGAAAATAA
1 ATGGCTCCTCTGAATAGAGGCAACGAACTTTT-AGAAAATAA
*
7803414 ATGGC-CCATCTGAATAGAGGCAACAAACTTTTAGAAAATAA
1 ATGGCTCC-TCTGAATAGAGGCAACGAACTTTTAGAAAATAA
* * * *
7803455 ATGGCTCATCTGAATAGAGGCATCGAACTTCTAAAAAATAA
1 ATGGCTCCTCTGAATAGAGGCAACGAACTTTTAGAAAATAA
* * * *
7803496 ATGGCTCATTTAAATAGAGGCAACGAAC-TTTAAAAAATAA
1 ATGGCTCCTCTGAATAGAGGCAACGAACTTTTAGAAAATAA
7803536 A
1 A
7803537 GGACTCTTTG
Statistics
Matches: 251, Mismatches: 34, Indels: 7
0.86 0.12 0.02
Matches are distributed among these distances:
40 12 0.05
41 203 0.81
42 36 0.14
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (41 bp):
ATGGCTCCTCTGAATAGAGGCAACGAACTTTTAGAAAATAA
Found at i:7803467 original size:124 final size:123
Alignment explanation
Indices: 7803208--7803536 Score: 403
Period size: 124 Copynumber: 2.7 Consensus size: 123
7803198 TGGCTCCTCT
* * * * * * *
7803208 ATGGCTCCTCTAAATAGAAGAAACGAACTTTTAGAAAATAAATGGCTCCTCTGAATAGAGGCAAC
1 ATGGCTCCTCTGAATAGAGGCAATGAACTTCTAGAAAATAAATGGCTCCTATGAATAAAGGCAAC
* * * *
7803273 GAACTTTAAGAAAATAATTGGCTCCTTTGAATAGAGACAACGAACTTTGAGAAAATAA
66 AAACTTTAAGAAAATAAATGGCTCCTCTGAATAGAGACAACAAACTTTGAGAAAATAA
* *
7803331 ATGGCTCCTCTGAATAGAGGCAATGAACTTCTAGAAAATAAATGGTTTCTATGAATAAAGGCAAC
1 ATGGCTCCTCTGAATAGAGGCAATGAACTTCTAGAAAATAAATGGCTCCTATGAATAAAGGCAAC
* * *
7803396 AAACTTTTGAGAAAATAAATGGC-CCATCTGAATAGAGGCAACAAACTTTTAGAAAATAA
66 AAAC-TTTAAGAAAATAAATGGCTCC-TCTGAATAGAGACAACAAACTTTGAGAAAATAA
* * * * * *
7803455 ATGGCTCATCTGAATAGAGGC-ATCGAACTTCTAAAAAATAAATGGCTCATTTAAATAGAGGCAA
1 ATGGCTCCTCTGAATAGAGGCAAT-GAACTTCTAGAAAATAAATGGCTCCTATGAATAAAGGCAA
*
7803519 CGAACTTTAA-AAAATAAA
65 CAAACTTTAAGAAAATAAA
7803537 GGACTCTTTG
Statistics
Matches: 177, Mismatches: 26, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
122 8 0.05
123 67 0.38
124 102 0.58
ACGTcount: A:0.43, C:0.15, G:0.17, T:0.25
Consensus pattern (123 bp):
ATGGCTCCTCTGAATAGAGGCAATGAACTTCTAGAAAATAAATGGCTCCTATGAATAAAGGCAAC
AAACTTTAAGAAAATAAATGGCTCCTCTGAATAGAGACAACAAACTTTGAGAAAATAA
Found at i:7803514 original size:165 final size:163
Alignment explanation
Indices: 7803233--7803536 Score: 441
Period size: 165 Copynumber: 1.9 Consensus size: 163
7803223 AGAAGAAACG
* * *
7803233 AACTTTTAGAAAATAAATGGCTCCTCTGAATAGAGGCAACGAACTTTAAGAAAATAATTGGCTCC
1 AACTTTTAGAAAATAAATGGCTCCTCTGAATAGAGGCAACAAACTTTAAGAAAATAAATGGCTCA
* * * * *
7803298 TTTGAATAGAGACAACGAACTTTGAGAAAATAAATGGCTCCTCTGAATAGAGGCAATGAACTTCT
66 TCTGAATAGAGACAACGAACTTTGAAAAAATAAATGGCTCATCTAAATAGAGGCAACGAACTT-T
*
7803363 AGAAAATAAATGGTTTCTATGAATAAAGGCAACA
130 AAAAAATAAATGGTTTCTATGAATAAAGGCAACA
*
7803397 AACTTTTGAGAAAATAAATGGC-CCATCTGAATAGAGGCAACAAACTTTTAGAAAATAAATGGCT
1 AACTTTT-AGAAAATAAATGGCTCC-TCTGAATAGAGGCAACAAACTTTAAGAAAATAAATGGCT
* * *
7803461 CATCTGAATAGAGGCATCGAACTTCT-AAAAAATAAATGGCTCATTTAAATAGAGGCAACGAACT
64 CATCTGAATAGAGACAACGAACTT-TGAAAAAATAAATGGCTCATCTAAATAGAGGCAACGAACT
7803525 TTAAAAAATAAA
128 TTAAAAAATAAA
7803537 GGACTCTTTG
Statistics
Matches: 124, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
164 19 0.15
165 104 0.84
166 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.17, T:0.25
Consensus pattern (163 bp):
AACTTTTAGAAAATAAATGGCTCCTCTGAATAGAGGCAACAAACTTTAAGAAAATAAATGGCTCA
TCTGAATAGAGACAACGAACTTTGAAAAAATAAATGGCTCATCTAAATAGAGGCAACGAACTTTA
AAAAATAAATGGTTTCTATGAATAAAGGCAACA
Found at i:7804953 original size:17 final size:17
Alignment explanation
Indices: 7804911--7804967 Score: 64
Period size: 16 Copynumber: 3.5 Consensus size: 17
7804901 TTTTCTCTCC
* *
7804911 TTTTCAATTTTTT-ATT
1 TTTTCATTTTTTTCAAT
*
7804927 TTTTCATTTTATTCAA-
1 TTTTCATTTTTTTCAAT
*
7804943 TTTTCATTTTTTTTAAT
1 TTTTCATTTTTTTCAAT
7804960 TTTTCATT
1 TTTTCATT
7804968 CATTTTTTTG
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
16 25 0.74
17 9 0.26
ACGTcount: A:0.19, C:0.09, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTCATTTTTTTCAAT
Found at i:7805016 original size:20 final size:20
Alignment explanation
Indices: 7804949--7805017 Score: 95
Period size: 21 Copynumber: 3.4 Consensus size: 20
7804939 TCAATTTTCA
*
7804949 TTTTTTTTAATTTTTCATTC
1 TTTTTTTGAATTTTTCATTC
7804969 ATTTTTTTGAATTTTTCATTCC
1 -TTTTTTTGAATTTTTCATT-C
7804991 TTTTTTTGAATTTTTC-TTC
1 TTTTTTTGAATTTTTCATTC
7805010 TTCTTTTT
1 TT-TTTTT
7805018 TCCATCCATT
Statistics
Matches: 45, Mismatches: 1, Indels: 5
0.88 0.02 0.10
Matches are distributed among these distances:
19 3 0.07
20 7 0.16
21 34 0.76
22 1 0.02
ACGTcount: A:0.13, C:0.12, G:0.03, T:0.72
Consensus pattern (20 bp):
TTTTTTTGAATTTTTCATTC
Found at i:7805018 original size:21 final size:21
Alignment explanation
Indices: 7804945--7805006 Score: 106
Period size: 21 Copynumber: 3.0 Consensus size: 21
7804935 TTATTCAATT
*
7804945 TTCATTTTTTTTAATTTTTCA
1 TTCATTTTTTTGAATTTTTCA
7804966 TTCATTTTTTTGAATTTTTCA
1 TTCATTTTTTTGAATTTTTCA
*
7804987 TTCCTTTTTTTGAATTTTTC
1 TTCATTTTTTTGAATTTTTC
7805007 TTCTTCTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 39 1.00
ACGTcount: A:0.16, C:0.11, G:0.03, T:0.69
Consensus pattern (21 bp):
TTCATTTTTTTGAATTTTTCA
Found at i:7805934 original size:19 final size:21
Alignment explanation
Indices: 7805910--7805960 Score: 61
Period size: 23 Copynumber: 2.4 Consensus size: 21
7805900 GATAACAAAT
*
7805910 GAAATCCTAC-TGC-CTAAAA
1 GAAATCCTACATACTCTAAAA
7805929 GAAATCCTAACATTACTCTAAAA
1 GAAATCCT-ACA-TACTCTAAAA
7805952 GAAATCCTA
1 GAAATCCTA
7805961 AAATGATAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 8 0.30
20 2 0.07
22 3 0.11
23 14 0.52
ACGTcount: A:0.45, C:0.24, G:0.08, T:0.24
Consensus pattern (21 bp):
GAAATCCTACATACTCTAAAA
Found at i:7811714 original size:185 final size:184
Alignment explanation
Indices: 7811381--7811731 Score: 410
Period size: 184 Copynumber: 1.9 Consensus size: 184
7811371 AAAAGAATAC
**
7811381 AATTATTTATATTGAAATTTCATCTAAATTATTTCACCATTTGAGTCAAATTTAGAGAAAATTTC
1 AATTATTTATATTGAAATTTCATCTAAATTATTTCACCATTTGAACCAAATTTAGAGAAAATTTC
* * *
7811446 TCACTAGAGAATTCTTAGAAAATTTATCATTTGAAATTTATAAAAATTTCATCCTTGGATAATTT
66 TCACTAGAGAATTCTTAGAAAATTTATCATTTGAAATTTATAAAAATTCCATCATTGGATAATTA
* *
7811511 GTATTTAATTCCAAAATTTTATATTTTT-TAATTTTTTTGGATTGAAAATAATATT
131 ATATTTAATCCCAAAATTTT-TATTTTTAT-ATTTTTTTGGATTGAAAATAATATT
** * * *
7811566 AATTATTGT-TATTGAAATTTTGTTTAAATTA-TTCTACCATTTGAACCAAATTTAGA-CAGATT
1 AATTATT-TATATTGAAATTTCATCTAAATTATTTC-ACCATTTGAACCAAATTTAGAGAAAATT
* * * * * * *
7811628 TCTTACCTA-CGAATT-TTATAAAATTTTGTCATTTGAAATTTTTATAAATTCCATTATTGGATA
64 TCTCA-CTAGAGAATTCTTAGAAAA-TTTATCATTTGAAATTTATAAAAATTCCATCATTGGATA
7811691 CA-TAATATTTAATCCCAAAAATTTTTATTTTTATATTTTTT
127 -ATTAATATTTAATCCC-AAAATTTTTATTTTTATATTTTTT
7811732 CTAAACTTAA
Statistics
Matches: 140, Mismatches: 19, Indels: 15
0.80 0.11 0.09
Matches are distributed among these distances:
183 7 0.05
184 74 0.53
185 58 0.41
186 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.07, T:0.47
Consensus pattern (184 bp):
AATTATTTATATTGAAATTTCATCTAAATTATTTCACCATTTGAACCAAATTTAGAGAAAATTTC
TCACTAGAGAATTCTTAGAAAATTTATCATTTGAAATTTATAAAAATTCCATCATTGGATAATTA
ATATTTAATCCCAAAATTTTTATTTTTATATTTTTTTGGATTGAAAATAATATT
Found at i:7813854 original size:14 final size:12
Alignment explanation
Indices: 7813818--7813846 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
7813808 TAAAATATAT
7813818 CAAATTCGAGTA
1 CAAATTCGAGTA
7813830 CAAATTCGAGTA
1 CAAATTCGAGTA
7813842 CAAAT
1 CAAAT
7813847 AATCGAGTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.45, C:0.17, G:0.14, T:0.24
Consensus pattern (12 bp):
CAAATTCGAGTA
Found at i:7818771 original size:193 final size:195
Alignment explanation
Indices: 7818427--7818816 Score: 635
Period size: 193 Copynumber: 2.0 Consensus size: 195
7818417 TTTTTATTTA
* *
7818427 TTAAAAAAAGTTTATTCTTGAGAAAAATAAATTAAAACCTTTTTATTGAAATAATTCTTAAAATG
1 TTAAAAAAAGTTTATTCTCGAGAAAAATAAATTAAAACATTTTTATTGAAATAATTCTTAAAATG
* *
7818492 TTCCAGTACGTTGGTAACATTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTTTAC
66 TTCCAGTACGTTGGTAACACTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTAC
* * *
7818557 TCGGAATACTTTTAGAATCTCATCTTTGGAGG-CTTGAA-TTTATTTTTCGTAAGAAA-ATGTCA
131 TCGGAATACTATTAGAATCTCATCTTTGGAGGTC-T-AATTTTACTTTTCGTAAAAAATATGTCA
7818619 TG
194 TG
*
7818621 TTAAAAAAA-TTTATTCTCGAGAAAAATAAATTAAAATATTTTTATTGAAATAATTCTTAAAATG
1 TTAAAAAAAGTTTATTCTCGAGAAAAATAAATTAAAACATTTTTATTGAAATAATTCTTAAAATG
*
7818685 TTCCGGTACGTTGGTAACACTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTAC
66 TTCCAGTACGTTGGTAACACTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTAC
*
7818750 TCGGAATACTATTATAATCTCATCTTTGGAGGTCTAATTTTACTTTTCGTAAAAAATTATGTCAT
131 TCGGAATACTATTAGAATCTCATCTTTGGAGGTCTAATTTTACTTTTCGTAAAAAA-TATGTCAT
7818815 G
195 G
7818816 T
1 T
7818817 ATGCAATGCA
Statistics
Matches: 182, Mismatches: 10, Indels: 7
0.91 0.05 0.04
Matches are distributed among these distances:
192 2 0.01
193 161 0.88
194 10 0.05
195 9 0.05
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.38
Consensus pattern (195 bp):
TTAAAAAAAGTTTATTCTCGAGAAAAATAAATTAAAACATTTTTATTGAAATAATTCTTAAAATG
TTCCAGTACGTTGGTAACACTAAAAGAACTCTTTCTCACCTAGAGATTTCTTAAAGCATCTCTAC
TCGGAATACTATTAGAATCTCATCTTTGGAGGTCTAATTTTACTTTTCGTAAAAAATATGTCATG
Found at i:7819312 original size:26 final size:27
Alignment explanation
Indices: 7819282--7819340 Score: 68
Period size: 26 Copynumber: 2.2 Consensus size: 27
7819272 TCCTACATTT
7819282 TTTATTATTT-TAGTATTATTATTAAA-
1 TTTATT-TTTATAGTATTATTATTAAAG
* * *
7819308 TTTATTTTTATATTATTGTTTTTAAAG
1 TTTATTTTTATAGTATTATTATTAAAG
7819335 TTTATT
1 TTTATT
7819341 CAAAAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
25 3 0.11
26 19 0.68
27 6 0.21
ACGTcount: A:0.29, C:0.00, G:0.05, T:0.66
Consensus pattern (27 bp):
TTTATTTTTATAGTATTATTATTAAAG
Found at i:7824606 original size:7 final size:7
Alignment explanation
Indices: 7824594--7824650 Score: 53
Period size: 7 Copynumber: 7.9 Consensus size: 7
7824584 TCATTTATTT
7824594 TATATAA
1 TATATAA
7824601 TATATAA
1 TATATAA
7824608 TATA-AA
1 TATATAA
*
7824614 TATAAAA
1 TATATAA
* *
7824621 TATCTTA
1 TATATAA
7824628 TATATAA
1 TATATAA
7824635 TAATATGAA
1 T-ATAT-AA
7824644 TAATATA
1 T-ATATA
7824651 TTTTTTAACC
Statistics
Matches: 42, Mismatches: 5, Indels: 5
0.81 0.10 0.10
Matches are distributed among these distances:
6 6 0.14
7 23 0.55
8 5 0.12
9 8 0.19
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (7 bp):
TATATAA
Found at i:7826273 original size:90 final size:91
Alignment explanation
Indices: 7826179--7826361 Score: 219
Period size: 93 Copynumber: 2.0 Consensus size: 91
7826169 GTAATCGAAA
* * * * *
7826179 TAATTTTTTAAATTTAA-TTTT-TTCATTATTAATCATGCTTTGAAATTAAAAAATGTAG-TGTT
1 TAATTATTAAAATTTAATTTTTATTCATTATCAATCATACTTTGAAACTAAAAAA-GT-GCTGTT
*
7826241 TGATAGATTATCAATAATGTTTTCAAAT
64 TCATAGATTATCAATAATGTTTTCAAAT
* *
7826269 TAATTATTAAAATTTAATTTTTTTATTCATTATCAATCATATTTTGAAACTAAAAAAGTGCTTTT
1 TAATTATTAAAATTTAA--TTTTTATTCATTATCAATCATACTTTGAAACTAAAAAAGTGCTGTT
* *
7826334 TCATATATTATCAATCATGTTTTCAAAT
64 TCATAGATTATCAATAATGTTTTCAAAT
7826362 CAAAACTATT
Statistics
Matches: 78, Mismatches: 10, Indels: 7
0.82 0.11 0.07
Matches are distributed among these distances:
90 15 0.19
92 1 0.01
93 34 0.44
94 28 0.36
ACGTcount: A:0.37, C:0.08, G:0.07, T:0.49
Consensus pattern (91 bp):
TAATTATTAAAATTTAATTTTTATTCATTATCAATCATACTTTGAAACTAAAAAAGTGCTGTTTC
ATAGATTATCAATAATGTTTTCAAAT
Found at i:7827515 original size:12 final size:12
Alignment explanation
Indices: 7827498--7827524 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
7827488 TAATTTATAT
7827498 TTTTGTATTGTA
1 TTTTGTATTGTA
7827510 TTTTGTATTGTA
1 TTTTGTATTGTA
7827522 TTT
1 TTT
7827525 GACGAATGTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.15, C:0.00, G:0.15, T:0.70
Consensus pattern (12 bp):
TTTTGTATTGTA
Found at i:7827758 original size:29 final size:32
Alignment explanation
Indices: 7827702--7827770 Score: 90
Period size: 31 Copynumber: 2.2 Consensus size: 32
7827692 AATAATACGG
7827702 ATATATACGAATAAACACAACTAAAACA-T-AT
1 ATATATACGAATAAACACAACT-AAACATTAAT
* *
7827733 ATATATATGAATAGACACAACT-AACATTAAT
1 ATATATACGAATAAACACAACTAAACATTAAT
7827764 ATATATA
1 ATATATA
7827771 AAATAACTAT
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
29 4 0.12
30 1 0.03
31 29 0.85
ACGTcount: A:0.55, C:0.13, G:0.04, T:0.28
Consensus pattern (32 bp):
ATATATACGAATAAACACAACTAAACATTAAT
Found at i:7827783 original size:21 final size:19
Alignment explanation
Indices: 7827754--7827792 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 19
7827744 TAGACACAAC
*
7827754 TAACATTAATATATATAAAA
1 TAACATTAAAATA-ATAAAA
7827774 TAACTATTAAAATAATAAA
1 TAAC-ATTAAAATAATAAA
7827793 TAATTATAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.62, C:0.05, G:0.00, T:0.33
Consensus pattern (19 bp):
TAACATTAAAATAATAAAA
Found at i:7846088 original size:8 final size:8
Alignment explanation
Indices: 7846077--7846115 Score: 51
Period size: 8 Copynumber: 4.6 Consensus size: 8
7846067 ATCAAAAATG
7846077 AAAAATAA
1 AAAAATAA
7846085 AAAAATAA
1 AAAAATAA
7846093 AAAAATAGA
1 AAAAATA-A
*
7846102 AAAACCTAA
1 AAAA-ATAA
7846111 AAAAA
1 AAAAA
7846116 GATAAAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
8 15 0.56
9 10 0.37
10 2 0.07
ACGTcount: A:0.82, C:0.05, G:0.03, T:0.10
Consensus pattern (8 bp):
AAAAATAA
Found at i:7846096 original size:16 final size:18
Alignment explanation
Indices: 7846077--7846115 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
7846067 ATCAAAAATG
7846077 AAAAATA-AAAAA-ATAA
1 AAAAATAGAAAAACATAA
*
7846093 AAAAATAGAAAAACCTAA
1 AAAAATAGAAAAACATAA
7846111 AAAAA
1 AAAAA
7846116 GATAAAAGAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
16 7 0.35
17 5 0.25
18 8 0.40
ACGTcount: A:0.82, C:0.05, G:0.03, T:0.10
Consensus pattern (18 bp):
AAAAATAGAAAAACATAA
Found at i:7847378 original size:22 final size:22
Alignment explanation
Indices: 7847352--7847468 Score: 103
Period size: 21 Copynumber: 5.3 Consensus size: 22
7847342 TGAATAAAAT
* *
7847352 TTTGAGTCTTCAAATGAAAATC
1 TTTGAGTTTTCAAATGAGAATC
*
7847374 TTTGAGTCTT-AAATGAGAATC
1 TTTGAGTTTTCAAATGAGAATC
* **
7847395 TTTAAGAAATTTTCAAATGCTAATC
1 TTT--G-AGTTTTCAAATGAGAATC
* * *
7847420 TTTAAGTTTTTAAAGGAGAATC
1 TTTGAGTTTTCAAATGAGAATC
*
7847442 -TTGAGTTTTCAAATCAGAATC
1 TTTGAGTTTTCAAATGAGAATC
7847463 TTTGAG
1 TTTGAG
7847469 ATGTGAAATC
Statistics
Matches: 75, Mismatches: 15, Indels: 10
0.75 0.15 0.10
Matches are distributed among these distances:
21 30 0.40
22 28 0.37
23 1 0.01
24 4 0.05
25 12 0.16
ACGTcount: A:0.35, C:0.10, G:0.15, T:0.39
Consensus pattern (22 bp):
TTTGAGTTTTCAAATGAGAATC
Found at i:7848004 original size:43 final size:42
Alignment explanation
Indices: 7847936--7848339 Score: 228
Period size: 43 Copynumber: 9.5 Consensus size: 42
7847926 GTCGATGAGC
** *
7847936 TTTATTTTTCTAAAGTCATTGAGCTTCTGATTAATGAAACTTTA
1 TTTATTTTT-TAAAGTTGTTGAGCTTCTGATTAATG-AGCTTTA
*
7847980 TTTATTTTTTAAAGTTGTTAAGCTTCTGATTAAATGAGCTTTA
1 TTTATTTTTTAAAGTTGTTGAGCTTCTGATT-AATGAGCTTTA
* * * *
7848023 TCTATTTTTTAAAGTTGTTGAGCCTCTGTTTAAAGGAGCTTTA
1 TTTATTTTTTAAAGTTGTTGAGCTTCTGATT-AATGAGCTTTA
* * ** * *
7848066 TTTATTTTTTAAAGTTATTGAGCCTCTTCTTAGAGGAGCCTTA
1 TTTATTTTTTAAAGTTGTTGAGCTTCTGATTA-ATGAGCTTTA
* * * * **
7848109 TTTATTTTTCAAAGTTTTTGAGCCTCTGCATAGAAT-AGCAATA
1 TTTATTTTTTAAAGTTGTTGAGCTTCTG-AT-TAATGAGCTTTA
* ** * * * **
7848152 -TT-TTTTTCAAAGTCATTGAGCCTCTGTTTAGAGGAATTTTA
1 TTTATTTTTTAAAGTTGTTGAGCTTCTGATTA-ATGAGCTTTA
** ** * * *
7848193 TTTATTTTCAAAAGTCATTGAGCCTCTGATTAAAAGAGCATTA
1 TTTATTTTTTAAAGTTGTTGAGCTTCTGATT-AATGAGCTTTA
* * * * *
7848236 TTTATTTTTCAAAAGTCGTTGAACCTCT-ATTTAGAGGAGCTTTA
1 TTTATTTTT-TAAAGTTGTTGAGCTTCTGA-TTA-ATGAGCTTTA
** * *
7848280 TTTATTTTCAAAAGTCGTTGAGTCTT-TGATTAAAGGAGCTTTA
1 TTTATTTTTTAAAGTTGTTGAG-CTTCTGATT-AATGAGCTTTA
*
7848323 --TCTTTTTTAAAGTTGTT
1 TTTATTTTTTAAAGTTGTT
7848340 TAAGCCTCTG
Statistics
Matches: 295, Mismatches: 50, Indels: 33
0.78 0.13 0.09
Matches are distributed among these distances:
39 1 0.00
40 2 0.01
41 38 0.13
42 5 0.02
43 194 0.66
44 54 0.18
45 1 0.00
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.46
Consensus pattern (42 bp):
TTTATTTTTTAAAGTTGTTGAGCTTCTGATTAATGAGCTTTA
Found at i:7848186 original size:84 final size:83
Alignment explanation
Indices: 7848015--7848372 Score: 281
Period size: 87 Copynumber: 4.2 Consensus size: 83
7848005 CTGATTAAAT
* * ** * * ** *
7848015 GAGCTTTATCTATTTTTTAAAGTTGTTGAGCCTCTGTTTAAAGGAGCTTTATTTATTTTTTAAAG
1 GAGCTTTATTTA-TTTTCAAAGTCATTGAGCCTCTGATTAAAAGAGCAATATTT-TTTTTCAAAG
*
7848080 TTATTGAGCCTCTTCTTAGAG
64 TCATTGAGCCTCTT-TTAGAG
* ** * *
7848101 GAGCCTTATTTATTTTTCAAAGTTTTTGAGCCTCTGCA-TAGAATAGCAATA-TTTTTTTCAAAG
1 GAGCTTTATTTA-TTTTCAAAGTCATTGAGCCTCTG-ATTAAAAGAGCAATATTTTTTTTCAAAG
7848164 TCATTGAGCCTCTGTTTAGAG
64 TCATTGAGCCTCT-TTTAGAG
** *
7848185 GAATTTTATTTATTTTCAAAAGTCATTGAGCCTCTGATTAAAAGAGCATTATTTATTTTTCAAAA
1 GAGCTTTATTTATTTTC-AAAGTCATTGAGCCTCTGATTAAAAGAGCAATATTT-TTTTTC-AAA
* *
7848250 GTCGTTGAACCTCTATTTAGAG
63 GTCATTGAGCCTCT-TTTAGAG
* * * * ** *
7848272 GAGCTTTATTTATTTTCAAAAGTCGTTGAGTCTTTGATTAAAGGAGCTTTATCTTTTTT-AAAGT
1 GAGCTTTATTTATTTTC-AAAGTCATTGAGCCTCTGATTAAAAGAGCAATATTTTTTTTCAAAG-
** *
7848336 TGTTTAAGCCTCTGTTTAGAG
64 TCATTGAGCCTCT-TTTAGAG
* **
7848357 AAGCTGCATTTATTTT
1 GAGCTTTATTTATTTT
7848373 TCCAAAAGTT
Statistics
Matches: 225, Mismatches: 39, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
83 6 0.03
84 66 0.29
85 34 0.15
86 51 0.23
87 68 0.30
ACGTcount: A:0.27, C:0.13, G:0.16, T:0.44
Consensus pattern (83 bp):
GAGCTTTATTTATTTTCAAAGTCATTGAGCCTCTGATTAAAAGAGCAATATTTTTTTTCAAAGTC
ATTGAGCCTCTTTTAGAG
Found at i:7848282 original size:87 final size:86
Alignment explanation
Indices: 7847936--7848381 Score: 349
Period size: 86 Copynumber: 5.2 Consensus size: 86
7847926 GTCGATGAGC
* *
7847936 TTTATTTTTCTAAAGTCATTGAGCTTCTGATTAATGAA-A-CTTTATTTATTTTTTAAAGTTGTT
1 TTTATTTTTCAAAAGTCATTGAGCCTCTGATTAA--AAGAGCTTTATTTA-TTTTTAAAGTTGTT
* * *
7847999 -AAGCTTCTGA-TTAAATGAGCTTTA
63 GAA-CCTCT-ATTTAGAGGAGCTTTA
* * ** * * *
7848023 TCTATTTTT-TAAAGTTGTTGAGCCTCTGTTTAAAGGAGCTTTATTTATTTTTTAAAGTTATTGA
1 TTTATTTTTCAAAAGTCATTGAGCCTCTGATTAAAAGAGCTTTATTTA-TTTTTAAAGTTGTTGA
* *
7848087 GCCTCT-TCTTAGAGGAGCCTTA
65 ACCTCTAT-TTAGAGGAGCTTTA
** * * ** * **
7848109 TTTATTTTTC-AAAGTTTTTGAGCCTCTGCA-TAGAATAGCAATATTT-TTTTCAAAGTCATTGA
1 TTTATTTTTCAAAAGTCATTGAGCCTCTG-ATTAAAAGAGCTTTATTTATTTTTAAAGTTGTTGA
* * **
7848171 GCCTCTGTTTAGAGGAATTTTA
65 ACCTCTATTTAGAGGAGCTTTA
* *
7848193 TTTA-TTTTCAAAAGTCATTGAGCCTCTGATTAAAAGAGCATTATTTATTTTTCAAAAGTCGTTG
1 TTTATTTTTCAAAAGTCATTGAGCCTCTGATTAAAAGAGCTTTATTTATTTTT--AAAGTTGTTG
7848257 AACCTCTATTTAGAGGAGCTTTA
64 AACCTCTATTTAGAGGAGCTTTA
* * * * * *
7848280 TTTA-TTTTCAAAAGTCGTTGAGTCTTTGATTAAAGGAGCTTTATCT-TTTTTAAAGTTGTTTAA
1 TTTATTTTTCAAAAGTCATTGAGCCTCTGATTAAAAGAGCTTTATTTATTTTTAAAGTTGTTGAA
* * **
7848343 GCCTCTGTTTAGAGAAGCTGCA
66 -CCTCTATTTAGAGGAGCTTTA
7848365 TTTATTTTTCCAAAAGT
1 TTTATTTTT-CAAAAGT
7848382 TATGAGCTTC
Statistics
Matches: 295, Mismatches: 48, Indels: 32
0.79 0.13 0.09
Matches are distributed among these distances:
83 6 0.02
84 75 0.25
85 27 0.09
86 103 0.35
87 84 0.28
ACGTcount: A:0.27, C:0.12, G:0.15, T:0.45
Consensus pattern (86 bp):
TTTATTTTTCAAAAGTCATTGAGCCTCTGATTAAAAGAGCTTTATTTATTTTTAAAGTTGTTGAA
CCTCTATTTAGAGGAGCTTTA
Found at i:7848348 original size:213 final size:214
Alignment explanation
Indices: 7847940--7848349 Score: 497
Period size: 213 Copynumber: 1.9 Consensus size: 214
7847930 ATGAGCTTTA
* ** ** *
7847940 TTTTTCTAAAGTCATTGAGCTTCTGATTAATGAAACTTTATTTATTTTTTAAAGTTGTTAAGCTT
1 TTTTTCTAAAGTCATTGAGCCTCTGATTAATGAAACTTTATTTATTTTCAAAAGTCATTAAGCCT
* * * * * *
7848005 CTGATTAAATGAGCTTTATCTATTTTTTAAAGTTGTTGAGCCTCTGTTTAAAGGAGCTTTATTTA
66 CTGATTAAAAGAGCATTATCTATTTTTAAAAGTCGTTGAACCTCTATTTAAAGGAGCTTTATTTA
** * * * * *
7848070 TTTTTTAAAGTTATTGAGCCTCTTCTTAGAGGAGCCTTATTTATTTTTCAAAGTTTTTGAGCCTC
131 TTTTCAAAAGTCATTGAGCCTCTTATTAAAGGAGCCTTATCTATTTTTCAAAGTTTTTAAGCCTC
7848135 TGCATAGAATAGCAATATT
196 TGCATAGAATAGCAATATT
* * * *
7848154 TTTTTC-AAAGTCATTGAGCCTCTGTTTAGA-GGAATTTTATTTATTTTCAAAAGTCATTGAGCC
1 TTTTTCTAAAGTCATTGAGCCTCTGATTA-ATGAAACTTTATTTATTTTCAAAAGTCATTAAGCC
* *
7848217 TCTGATTAAAAGAGCATTATTTATTTTTCAAAAGTCGTTGAACCTCTATTTAGAGGAGCTTTATT
65 TCTGATTAAAAGAGCATTATCTATTTTT-AAAAGTCGTTGAACCTCTATTTAAAGGAGCTTTATT
* * *
7848282 TATTTTCAAAAGTCGTTGAGTCT-TTGATTAAAGGAGCTTTATCT-TTTTT-AAAGTTGTTTAAG
129 TATTTTCAAAAGTCATTGAGCCTCTT-ATTAAAGGAGCCTTATCTATTTTTCAAAGTT-TTTAAG
7848344 CCTCTG
192 CCTCTG
7848350 TTTAGAGAAG
Statistics
Matches: 164, Mismatches: 28, Indels: 9
0.82 0.14 0.04
Matches are distributed among these distances:
212 6 0.04
213 88 0.54
214 70 0.43
ACGTcount: A:0.27, C:0.12, G:0.16, T:0.45
Consensus pattern (214 bp):
TTTTTCTAAAGTCATTGAGCCTCTGATTAATGAAACTTTATTTATTTTCAAAAGTCATTAAGCCT
CTGATTAAAAGAGCATTATCTATTTTTAAAAGTCGTTGAACCTCTATTTAAAGGAGCTTTATTTA
TTTTCAAAAGTCATTGAGCCTCTTATTAAAGGAGCCTTATCTATTTTTCAAAGTTTTTAAGCCTC
TGCATAGAATAGCAATATT
Found at i:7848461 original size:12 final size:12
Alignment explanation
Indices: 7848441--7848483 Score: 61
Period size: 12 Copynumber: 3.6 Consensus size: 12
7848431 TCTAATTTAA
7848441 AAAAAAAAACAT
1 AAAAAAAAACAT
*
7848453 AAAATAAAACAT
1 AAAAAAAAACAT
7848465 AAAAAATAAA-AT
1 AAAAAA-AAACAT
7848477 AAAAAAA
1 AAAAAAA
7848484 TGAATATGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
11 1 0.04
12 24 0.86
13 3 0.11
ACGTcount: A:0.84, C:0.05, G:0.00, T:0.12
Consensus pattern (12 bp):
AAAAAAAAACAT
Found at i:7848668 original size:4 final size:4
Alignment explanation
Indices: 7848659--7848720 Score: 85
Period size: 4 Copynumber: 15.8 Consensus size: 4
7848649 TTCATTGGTC
7848659 TATT TATT TATT TATAT TATT TATT T-TAT TA-T TA-T TATT TATT TATT
1 TATT TATT TATT TAT-T TATT TATT TAT-T TATT TATT TATT TATT TATT
7848706 TATT TATT TATT TAT
1 TATT TATT TATT TAT
7848721 GTTTCTAGGT
Statistics
Matches: 54, Mismatches: 0, Indels: 8
0.87 0.00 0.13
Matches are distributed among these distances:
3 7 0.13
4 43 0.80
5 4 0.07
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (4 bp):
TATT
Found at i:7849617 original size:21 final size:21
Alignment explanation
Indices: 7849575--7849617 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7849565 CCACTTTTGG
* *
7849575 TATTTTATTTATTTATTTAGT
1 TATTATATTTATTTATTAAGT
7849596 TATTATATTTATTT-TATAAGT
1 TATTATATTTATTTAT-TAAGT
7849617 T
1 T
7849618 TTTTCATTAT
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (21 bp):
TATTATATTTATTTATTAAGT
Found at i:7850097 original size:24 final size:25
Alignment explanation
Indices: 7850070--7850116 Score: 62
Period size: 24 Copynumber: 1.9 Consensus size: 25
7850060 GACAATTATC
7850070 CAAA-GATAAGAATCTTAA-AAATTT
1 CAAATGATAA-AATCTTAAGAAATTT
*
7850094 CAAATGATAAATTCTTAAGAAAT
1 CAAATGATAAAATCTTAAGAAAT
7850117 CTCTAGGTGT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
24 11 0.55
25 9 0.45
ACGTcount: A:0.53, C:0.09, G:0.09, T:0.30
Consensus pattern (25 bp):
CAAATGATAAAATCTTAAGAAATTT
Found at i:7853248 original size:2 final size:2
Alignment explanation
Indices: 7853241--7853275 Score: 70
Period size: 2 Copynumber: 17.5 Consensus size: 2
7853231 TTTTTAACAT
7853241 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
7853276 ATATATATAT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:7861513 original size:7 final size:7
Alignment explanation
Indices: 7861498--7861555 Score: 55
Period size: 7 Copynumber: 7.9 Consensus size: 7
7861488 ATTGGTCTAT
7861498 TTATTTA
1 TTATTTA
*
7861505 TTATGTA
1 TTATTTA
7861512 TTATTTA
1 TTATTTA
7861519 TTTATTTCTA
1 -TTA-TT-TA
7861529 TTATTTA
1 TTATTTA
*
7861536 TTTTATTA
1 TTAT-TTA
7861544 TTA-TTA
1 TTATTTA
7861550 TTATTT
1 TTATTT
7861556 TGGGTTTTAT
Statistics
Matches: 42, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
6 6 0.14
7 19 0.45
8 10 0.24
9 5 0.12
10 2 0.05
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.71
Consensus pattern (7 bp):
TTATTTA
Found at i:7861518 original size:18 final size:17
Alignment explanation
Indices: 7861495--7861555 Score: 81
Period size: 18 Copynumber: 3.5 Consensus size: 17
7861485 TTCATTGGTC
7861495 TATTTATTTATTATGTAT
1 TATTTATTTATTAT-TAT
7861513 TATTTATTTATT-TCTAT
1 TATTTATTTATTAT-TAT
7861530 TATTTATTTTATTATTAT
1 TATTTA-TTTATTATTAT
7861548 TA-TTATTT
1 TATTTATTT
7861556 TGGGTTTTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
16 3 0.08
17 13 0.32
18 23 0.57
19 1 0.03
ACGTcount: A:0.26, C:0.02, G:0.02, T:0.70
Consensus pattern (17 bp):
TATTTATTTATTATTAT
Found at i:7861534 original size:13 final size:12
Alignment explanation
Indices: 7861495--7861554 Score: 63
Period size: 11 Copynumber: 5.1 Consensus size: 12
7861485 TTCATTGGTC
7861495 TATTTA-TTTAT
1 TATTTATTTTAT
* *
7861506 TATGTATTAT-T
1 TATTTATTTTAT
7861517 TATTTATTTCTAT
1 TATTTATTT-TAT
7861530 TATTTATTTTAT
1 TATTTATTTTAT
7861542 TA-TTATTATTAT
1 TATTTATT-TTAT
7861554 T
1 T
7861555 TTGGGTTTTA
Statistics
Matches: 41, Mismatches: 4, Indels: 7
0.79 0.08 0.13
Matches are distributed among these distances:
11 18 0.44
12 13 0.32
13 10 0.24
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.70
Consensus pattern (12 bp):
TATTTATTTTAT
Found at i:7862588 original size:24 final size:26
Alignment explanation
Indices: 7862550--7862598 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 26
7862540 ATAATTATCT
7862550 AATGATAGAATTTTTA-AAAATTTCA
1 AATGATAGAATTTTTATAAAATTTCA
7862575 AATGATA-AATTTTTATAAAATTTC
1 AATGATAGAATTTTTATAAAATTTC
7862599 TAGGTGAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
24 8 0.35
25 15 0.65
ACGTcount: A:0.47, C:0.04, G:0.06, T:0.43
Consensus pattern (26 bp):
AATGATAGAATTTTTATAAAATTTCA
Found at i:7862610 original size:26 final size:24
Alignment explanation
Indices: 7862558--7862612 Score: 65
Period size: 26 Copynumber: 2.2 Consensus size: 24
7862548 CTAATGATAG
*
7862558 AATTTTTAAAAATTTCAAATGATA
1 AATTTTTAAAAATTTCAAATGAGA
**
7862582 AATTTTTATAAAATTTCTAGGTGAGA
1 AATTTTTA-AAAATTTC-AAATGAGA
7862608 AATTT
1 AATTT
7862613 GTCTAGATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 8 0.31
25 8 0.31
26 10 0.38
ACGTcount: A:0.44, C:0.04, G:0.09, T:0.44
Consensus pattern (24 bp):
AATTTTTAAAAATTTCAAATGAGA
Found at i:7864242 original size:16 final size:15
Alignment explanation
Indices: 7864207--7864249 Score: 50
Period size: 16 Copynumber: 2.8 Consensus size: 15
7864197 TGCATCATTT
7864207 TCATTGTCATATGTA
1 TCATTGTCATATGTA
* *
7864222 ACATTGTGCATTTGTA
1 TCATTGT-CATATGTA
*
7864238 TCATTTTCATAT
1 TCATTGTCATAT
7864250 TAGATTTCAT
Statistics
Matches: 22, Mismatches: 5, Indels: 2
0.76 0.17 0.07
Matches are distributed among these distances:
15 10 0.45
16 12 0.55
ACGTcount: A:0.26, C:0.14, G:0.12, T:0.49
Consensus pattern (15 bp):
TCATTGTCATATGTA
Found at i:7864277 original size:21 final size:21
Alignment explanation
Indices: 7864253--7864301 Score: 98
Period size: 21 Copynumber: 2.3 Consensus size: 21
7864243 TTCATATTAG
7864253 ATTTCATCCATGAAAATGTAC
1 ATTTCATCCATGAAAATGTAC
7864274 ATTTCATCCATGAAAATGTAC
1 ATTTCATCCATGAAAATGTAC
7864295 ATTTCAT
1 ATTTCAT
7864302 TTATGTATCA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.37, C:0.18, G:0.08, T:0.37
Consensus pattern (21 bp):
ATTTCATCCATGAAAATGTAC
Found at i:7865488 original size:47 final size:47
Alignment explanation
Indices: 7865435--7865528 Score: 179
Period size: 47 Copynumber: 2.0 Consensus size: 47
7865425 ATTATTGAGA
7865435 ATGCCATTAAAAATAACAAGTAAGAAAAAGAGAAAATTAAGAAGGTG
1 ATGCCATTAAAAATAACAAGTAAGAAAAAGAGAAAATTAAGAAGGTG
*
7865482 ATGCCATTAAAAATAACAAGTAAGAAACAGAGAAAATTAAGAAGGTG
1 ATGCCATTAAAAATAACAAGTAAGAAAAAGAGAAAATTAAGAAGGTG
7865529 CCAAAACAGA
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
47 46 1.00
ACGTcount: A:0.56, C:0.07, G:0.19, T:0.17
Consensus pattern (47 bp):
ATGCCATTAAAAATAACAAGTAAGAAAAAGAGAAAATTAAGAAGGTG
Found at i:7866415 original size:14 final size:15
Alignment explanation
Indices: 7866393--7866428 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
7866383 CATCCAACCA
7866393 TTATTCCATG-CTTT
1 TTATTCCATGTCTTT
*
7866407 TTTTTCCATGTCTTT
1 TTATTCCATGTCTTT
7866422 TTATTCC
1 TTATTCC
7866429 CAATCTCAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 9 0.47
15 10 0.53
ACGTcount: A:0.11, C:0.22, G:0.06, T:0.61
Consensus pattern (15 bp):
TTATTCCATGTCTTT
Found at i:7867253 original size:17 final size:17
Alignment explanation
Indices: 7867226--7867262 Score: 58
Period size: 16 Copynumber: 2.2 Consensus size: 17
7867216 GAGAGATATC
7867226 AAAAATAAAAAATA-AA
1 AAAAATAAAAAATAGAA
7867242 AAAAATAGAAAAATAGAA
1 AAAAATA-AAAAATAGAA
7867260 AAA
1 AAA
7867263 CGTAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 7 0.37
17 7 0.37
18 5 0.26
ACGTcount: A:0.84, C:0.00, G:0.05, T:0.11
Consensus pattern (17 bp):
AAAAATAAAAAATAGAA
Found at i:7868538 original size:22 final size:20
Alignment explanation
Indices: 7868500--7868553 Score: 65
Period size: 21 Copynumber: 2.6 Consensus size: 20
7868490 GAAAATTTTG
7868500 AATAAAAT-TTTGAGTCTTCA
1 AATAAAATCTTTGAGTCTT-A
*
7868520 AATGAAAATCTTTTAGTCTTA
1 AAT-AAAATCTTTGAGTCTTA
7868541 AATAAGAATCTTT
1 AATAA-AATCTTT
7868554 AAAAAATTTT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
20 5 0.17
21 16 0.53
22 9 0.30
ACGTcount: A:0.41, C:0.09, G:0.09, T:0.41
Consensus pattern (20 bp):
AATAAAATCTTTGAGTCTTA
Found at i:7868623 original size:22 final size:22
Alignment explanation
Indices: 7868572--7868623 Score: 70
Period size: 21 Copynumber: 2.4 Consensus size: 22
7868562 TTCAAATGCT
*
7868572 AATCTTTAAGTTTTTAAAGAAG
1 AATCTTTGAGTTTTTAAAGAAG
**
7868594 AATC-TTGAGTTTTTAAATCAG
1 AATCTTTGAGTTTTTAAAGAAG
7868615 AATCTTTGA
1 AATCTTTGA
7868624 TATGTGAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
21 18 0.69
22 8 0.31
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.42
Consensus pattern (22 bp):
AATCTTTGAGTTTTTAAAGAAG
Found at i:7869164 original size:43 final size:43
Alignment explanation
Indices: 7869093--7869432 Score: 136
Period size: 43 Copynumber: 7.9 Consensus size: 43
7869083 TCGATGTTAT
** *
7869093 TTTTCTAAAGTCATTGAGCCTCTAATT-AATGAAACTTTATTTA
1 TTTTCTAAAGTTGTTAAGCCTCTAATTAAATG-AACTTTATTTA
* * *
7869136 TTTTCTAAAGTTGTTAAGCTTCTTATTAAATGAGCTTTATTTA
1 TTTTCTAAAGTTGTTAAGCCTCTAATTAAATGAACTTTATTTA
* * * ** * * * *
7869179 TTTTTTAAAGTTGTTGAGCCTATTCTTAGAGGAGCCTTATTTA
1 TTTTCTAAAGTTGTTAAGCCTCTAATTAAATGAACTTTATTTA
* * * * * *
7869222 TTTT-TCAAAGTTTTTGAGCATCTGCA-TAGAA-GAGCATTATTT-
1 TTTTCT-AAAGTTGTTAAGCCTCT-AATTA-AATGAACTTTATTTA
** ** ** * * *
7869264 TTTTC-AAAGTCATCGAGCCTCTGTTTAGAGGAATTTTATTTA
1 TTTTCTAAAGTTGTTAAGCCTCTAATTAAATGAACTTTATTTA
* ** * * * * *
7869306 TTTTCAAAAGTCATTGAGCGTCTGATTAAATGAGCATTATTTA
1 TTTTCTAAAGTTGTTAAGCCTCTAATTAAATGAACTTTATTTA
* * * * * *
7869349 TTTTTCAAAAGTCGTTGAA-CCTCTATTTAGAGGAGCTTTATTTA
1 -TTTTCTAAAGTTGTT-AAGCCTCTAATTAAATGAACTTTATTTA
* ** * *
7869393 TTTTCAAAAGTCATTAAGCCTCTGATTAAATGAGCTTTAT
1 TTTTCTAAAGTTGTTAAGCCTCTAATTAAATGAACTTTAT
7869433 ATCGTTGAGC
Statistics
Matches: 233, Mismatches: 52, Indels: 24
0.75 0.17 0.08
Matches are distributed among these distances:
40 1 0.00
41 23 0.10
42 12 0.05
43 158 0.68
44 38 0.16
45 1 0.00
ACGTcount: A:0.29, C:0.13, G:0.15, T:0.44
Consensus pattern (43 bp):
TTTTCTAAAGTTGTTAAGCCTCTAATTAAATGAACTTTATTTA
Found at i:7869392 original size:87 final size:87
Alignment explanation
Indices: 7869089--7869432 Score: 337
Period size: 87 Copynumber: 4.0 Consensus size: 87
7869079 ATTGTCGATG
* * * **
7869089 TTATTTTTCTAAAGTCATTGAGCCTCTAATTA-ATGAAACTTTATTTATTTTCTAAAGTTGTTAA
1 TTATTTTTCTAAAGTCATTGAGCCTCTATTTAGA-GGAACTTTATTTATTTTCAAAAGTCATTAA
* * *
7869153 GCTTCTTATTAAATGAGCTTTAT
65 GCATCTGATTAAATGAGCATTAT
** * * * ** *
7869176 TTATTTTT-TAAAGTTGTTGAGCCTAT-TCTTAGAGGAGCCTTATTTATTTTTC-AAAGTTTTTG
1 TTATTTTTCTAAAGTCATTGAGCCTCTAT-TTAGAGGAACTTTATTTA-TTTTCAAAAGTCATTA
7869238 AGCATCTGCA-TAGAA-GAGCATTA-
64 AGCATCTG-ATTA-AATGAGCATTAT
* * * *
7869261 TT-TTTTTC-AAAGTCATCGAGCCTCTGTTTAGAGGAATTTTATTTATTTTCAAAAGTCATTGAG
1 TTATTTTTCTAAAGTCATTGAGCCTCTATTTAGAGGAACTTTATTTATTTTCAAAAGTCATTAAG
*
7869324 CGTCTGATTAAATGAGCATTAT
66 CATCTGATTAAATGAGCATTAT
* * * *
7869346 TTATTTTTCAAAAGTCGTTGAACCTCTATTTAGAGGAGCTTTATTTATTTTCAAAAGTCATTAAG
1 TTATTTTTCTAAAGTCATTGAGCCTCTATTTAGAGGAACTTTATTTATTTTCAAAAGTCATTAAG
* *
7869411 CCTCTGATTAAATGAGCTTTAT
66 CATCTGATTAAATGAGCATTAT
7869433 ATCGTTGAGC
Statistics
Matches: 213, Mismatches: 31, Indels: 26
0.79 0.11 0.10
Matches are distributed among these distances:
83 8 0.04
84 58 0.27
85 5 0.02
86 57 0.27
87 85 0.40
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (87 bp):
TTATTTTTCTAAAGTCATTGAGCCTCTATTTAGAGGAACTTTATTTATTTTCAAAAGTCATTAAG
CATCTGATTAAATGAGCATTAT
Found at i:7869399 original size:170 final size:171
Alignment explanation
Indices: 7869092--7869400 Score: 410
Period size: 170 Copynumber: 1.8 Consensus size: 171
7869082 GTCGATGTTA
* * ** *
7869092 TTTTTCTAAAGTCATTGAGCCTCTAATTAATGAAACTTTATTTATTTTCTAAAGTTGTTAAGCTT
1 TTTTTCTAAAGTCATCGAGCCTCTAATTAATGAAACTTTATTTATTTTCAAAAGTCATTAAGCGT
* * * * *
7869157 CTTATTAAATGAGCTTTATTTATTTTTTAAAGTTGTTGAGCCTATTCTTAGAGGAGCCTTATTTA
66 CTGATTAAATGAGCATTATTTATTTTTAAAAGTCGTTGAACCTATTCTTAGAGGAGCCTTATTTA
7869222 TTTTTCAAAGTTTTTGAGCATCTGCATAGAAGAGCATTATT
131 TTTTTCAAAGTTTTTGAGCATCTGCATAGAAGAGCATTATT
** * * *
7869263 TTTTTC-AAAGTCATCGAGCCTCTGTTTAGA-GGAATTTTATTTATTTTCAAAAGTCATTGAGCG
1 TTTTTCTAAAGTCATCGAGCCTCTAATTA-ATGAAACTTTATTTATTTTCAAAAGTCATTAAGCG
* *
7869326 TCTGATTAAATGAGCATTATTTATTTTTCAAAAGTCGTTGAACCTCTAT-TTAGAGGAGCTTTAT
65 TCTGATTAAATGAGCATTATTTATTTTT-AAAAGTCGTTGAACCTAT-TCTTAGAGGAGCCTTAT
7869390 TTA-TTTTCAAA
128 TTATTTTTCAAA
7869401 AGTCATTAAG
Statistics
Matches: 118, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
170 79 0.67
171 38 0.32
172 1 0.01
ACGTcount: A:0.28, C:0.12, G:0.15, T:0.45
Consensus pattern (171 bp):
TTTTTCTAAAGTCATCGAGCCTCTAATTAATGAAACTTTATTTATTTTCAAAAGTCATTAAGCGT
CTGATTAAATGAGCATTATTTATTTTTAAAAGTCGTTGAACCTATTCTTAGAGGAGCCTTATTTA
TTTTTCAAAGTTTTTGAGCATCTGCATAGAAGAGCATTATT
Found at i:7869790 original size:4 final size:4
Alignment explanation
Indices: 7869781--7869834 Score: 69
Period size: 4 Copynumber: 13.8 Consensus size: 4
7869771 TTCATTGGTC
7869781 TATT TATT TATT TATAT TATT TATT T-TAT TA-T TA-T TATT TATT TATT
1 TATT TATT TATT TAT-T TATT TATT TAT-T TATT TATT TATT TATT TATT
7869828 TATT TAT
1 TATT TAT
7869835 GTTTCTAGGT
Statistics
Matches: 46, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
3 7 0.15
4 35 0.76
5 4 0.09
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (4 bp):
TATT
Found at i:7869810 original size:18 final size:17
Alignment explanation
Indices: 7869781--7869834 Score: 76
Period size: 18 Copynumber: 3.2 Consensus size: 17
7869771 TTCATTGGTC
7869781 TATTTATTTATTTATAT
1 TATTTATTTATTTATAT
7869798 TATTTATTT-TATTATTAT
1 TATTTATTTAT-TTA-TAT
7869816 TATTTATTTATTTAT-T
1 TATTTATTTATTTATAT
7869832 TAT
1 TAT
7869835 GTTTCTAGGT
Statistics
Matches: 34, Mismatches: 0, Indels: 7
0.83 0.00 0.17
Matches are distributed among these distances:
16 5 0.15
17 13 0.38
18 15 0.44
19 1 0.03
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (17 bp):
TATTTATTTATTTATAT
Found at i:7869920 original size:3 final size:3
Alignment explanation
Indices: 7869914--7869945 Score: 64
Period size: 3 Copynumber: 10.7 Consensus size: 3
7869904 TGATGATTAA
7869914 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
7869946 AGTAATTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 29 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:7870767 original size:21 final size:21
Alignment explanation
Indices: 7870725--7870767 Score: 52
Period size: 21 Copynumber: 2.0 Consensus size: 21
7870715 CCACTTTTGG
* *
7870725 TATTTTATTTATTTATTTAGT
1 TATTATATTTATTTATTAAGT
7870746 TATTATATTTATTT-TATAAGT
1 TATTATATTTATTTAT-TAAGT
7870767 T
1 T
7870768 TTTTTCATAA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
20 1 0.05
21 18 0.95
ACGTcount: A:0.28, C:0.00, G:0.05, T:0.67
Consensus pattern (21 bp):
TATTATATTTATTTATTAAGT
Found at i:7870891 original size:25 final size:25
Alignment explanation
Indices: 7870847--7870894 Score: 64
Period size: 25 Copynumber: 1.9 Consensus size: 25
7870837 ATAATTATCC
7870847 AATGATAGAATCTTTAAAAATTTCA
1 AATGATAGAATCTTTAAAAATTTCA
7870872 AATGATA-AAT-TTCTATAAAATTT
1 AATGATAGAATCTT-TA-AAAATTT
7870895 TTAGATATGA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
23 2 0.10
24 5 0.24
25 14 0.67
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (25 bp):
AATGATAGAATCTTTAAAAATTTCA
Found at i:7874871 original size:2 final size:2
Alignment explanation
Indices: 7874864--7874910 Score: 94
Period size: 2 Copynumber: 23.5 Consensus size: 2
7874854 TTTTTAACAT
7874864 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
7874906 TC TC T
1 TC TC T
7874911 ATATATATAT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 45 1.00
ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51
Consensus pattern (2 bp):
TC
Found at i:7874915 original size:2 final size:2
Alignment explanation
Indices: 7874910--7874950 Score: 73
Period size: 2 Copynumber: 20.5 Consensus size: 2
7874900 TCTCTCTCTC
*
7874910 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA AA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
7874951 GTGTACATGA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
TA
Found at i:7885415 original size:153 final size:154
Alignment explanation
Indices: 7885128--7885418 Score: 390
Period size: 153 Copynumber: 1.9 Consensus size: 154
7885118 CTCTCCTAAC
* *
7885128 AAATTACCAAAATACCTTTTTCATTATTTGATAAAAAATTGACACATGACTAAATTGACTATTAT
1 AAATTACCAAAATACCATTTTCATTATTTGATAAAAAATTGACACATGACCAAATTGACTATTAT
* * *
7885193 GCTATTATACCATAATTACAAAAATATATCTTCTCTTATAATTATTTATTATAATACTCTCATAT
66 GCTATTATACCATAATTACAAAAATATATCTTCTCTTATAATTATTTATTATAATACCCGCATAC
7885258 CATAATTATAGAAATACTCTTAAG
131 CATAATTATAGAAATACTCTTAAG
* * * *
7885282 AAATTATC-AAATACCATTTTCATTGTTTGATAAGAAATTGACACATGTCCAAATTGACTATTAT
1 AAATTACCAAAATACCATTTTCATTATTTGATAAAAAATTGACACATGACCAAATTGACTATTAT
* ** ** ** *
7885346 GCTTTTATATTATAATTA-TGAAAT-TACTCTTTCTCTTATAATTATTTATTATTTTACCCGCGT
66 GCTATTATACCATAATTACAAAAATATA-TC-TTCTCTTATAATTATTTATTATAATACCCGCAT
7885409 ACCATAATTA
129 ACCATAATTA
7885419 CAAAAATATC
Statistics
Matches: 118, Mismatches: 17, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
151 2 0.02
152 6 0.05
153 103 0.87
154 7 0.06
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (154 bp):
AAATTACCAAAATACCATTTTCATTATTTGATAAAAAATTGACACATGACCAAATTGACTATTAT
GCTATTATACCATAATTACAAAAATATATCTTCTCTTATAATTATTTATTATAATACCCGCATAC
CATAATTATAGAAATACTCTTAAG
Found at i:7885870 original size:60 final size:58
Alignment explanation
Indices: 7885698--7885889 Score: 167
Period size: 61 Copynumber: 3.2 Consensus size: 58
7885688 CTACAATACC
* *
7885698 ATAATTACTA-AAATACTTCTCTACTTATAATTAACTAAAATTATTATAATATCCTCTTATA
1 ATAATTA-TAGAAATACCTC-CTAC-CATAATTAACTAAAATTATTATAATA-CCTCTTATA
* *
7885759 ATAATTATAGAAATACCATTCCTACCATAATTAACTAAAATTACTACAATACCTCTCCTACTA
1 ATAATTATAGAAATACC--TCCTACCATAATTAACTAAAATTATTATAATACCTCT--TA-TA
* ** *
7885822 A-AATTAT-GAAAATACC-CCTAGCATAATTATTTAAAAATTATTATAATACCTTTCATATA
1 ATAATTATAG-AAATACCTCCTACCATAATTAACT-AAAATTATTATAATACC--TCTTATA
7885881 ATAATTATA
1 ATAATTATA
7885890 TAAAGGCTTT
Statistics
Matches: 109, Mismatches: 10, Indels: 24
0.76 0.07 0.17
Matches are distributed among these distances:
59 16 0.15
60 30 0.28
61 37 0.34
62 21 0.19
63 5 0.05
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.38
Consensus pattern (58 bp):
ATAATTATAGAAATACCTCCTACCATAATTAACTAAAATTATTATAATACCTCTTATA
Found at i:7886220 original size:129 final size:129
Alignment explanation
Indices: 7885906--7886229 Score: 334
Period size: 130 Copynumber: 2.5 Consensus size: 129
7885896 CTTTTATGAG
* * * *
7885906 TACTACATAAGAAGTTGACATGTGACATTTTTTTCAAAATTACTATAATA-CTTCTATAAAATTA
1 TACTTCATAAAAATTTGACATGTGACATTTTTTT-AAAATTACTATAATACCCT-TATAAAATTA
* * * * * * ** *
7885970 TATATTAAATTTTAAAATAATATGAAATTAAACTACTTATTAAATTATTAATATATCTTTTTTCA
64 CATATGAAATTTTAAAATAATATAAAATTAAACTACGTATTAAATTACTAAAATATCTCCTTGCA
7886035 T
129 T
* * * * * * *
7886036 TACTTTATAAAAATTTTATATGTTATATTTTATTTAAAATTATTATAATACCCTTATTAAATTAC
1 TACTTCATAAAAATTTGACATGTGACATTTT-TTTAAAATTACTATAATACCCTTATAAAATTAC
*
7886101 ATATGAAATTTTAATATAATATAAAATT-AACTACGTATTAAATTACTAAAATA-C-CCTTGCAT
65 ATATGAAATTTTAAAATAATATAAAATTAAACTACGTATTAAATTACTAAAATATCTCCTTGCAT
* * *
7886163 TACTTCATAAATACTTTGACATGTGGA-ATTTTGTTTGAAATTTACTATAATACCCTTATGAAAT
1 TACTTCATAAA-AATTTGACATGT-GACATTTT-TTT-AAAATTACTATAATACCCTTATAAAAT
7886227 TAC
62 TAC
7886230 TTGTTAAATG
Statistics
Matches: 159, Mismatches: 30, Indels: 11
0.80 0.15 0.05
Matches are distributed among these distances:
127 15 0.09
128 18 0.11
129 50 0.31
130 71 0.45
131 5 0.03
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (129 bp):
TACTTCATAAAAATTTGACATGTGACATTTTTTTAAAATTACTATAATACCCTTATAAAATTACA
TATGAAATTTTAAAATAATATAAAATTAAACTACGTATTAAATTACTAAAATATCTCCTTGCAT
Found at i:7886499 original size:19 final size:19
Alignment explanation
Indices: 7886475--7886512 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
7886465 ATATTTATAC
7886475 TACCATAATTGACCAAAAT
1 TACCATAATTGACCAAAAT
*
7886494 TACCATAATTGATCAAAAT
1 TACCATAATTGACCAAAAT
7886513 AACACCCCTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.47, C:0.18, G:0.05, T:0.29
Consensus pattern (19 bp):
TACCATAATTGACCAAAAT
Found at i:7887754 original size:20 final size:20
Alignment explanation
Indices: 7887729--7887767 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
7887719 GTAGATATTG
7887729 ACTTTACTGATATGACATTA
1 ACTTTACTGATATGACATTA
*
7887749 ACTTTACTGATATGGCATT
1 ACTTTACTGATATGACATT
7887768 GGTTTATTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.31, C:0.15, G:0.13, T:0.41
Consensus pattern (20 bp):
ACTTTACTGATATGACATTA
Found at i:7887923 original size:18 final size:16
Alignment explanation
Indices: 7887902--7887961 Score: 57
Period size: 18 Copynumber: 3.5 Consensus size: 16
7887892 TATAACAAAT
7887902 ATTTTGAATTTTTTAAAA
1 ATTTT-AATTTTTT-AAA
*
7887920 ATTTTCTATTTTTTCAAA
1 ATTTT-AATTTTTT-AAA
* *
7887938 ATATTAAATTTTTAAA
1 ATTTTAATTTTTTAAA
7887954 ATTTTAAT
1 ATTTTAAT
7887962 AATATTTTAT
Statistics
Matches: 34, Mismatches: 8, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
16 9 0.26
17 6 0.18
18 19 0.56
ACGTcount: A:0.38, C:0.03, G:0.02, T:0.57
Consensus pattern (16 bp):
ATTTTAATTTTTTAAA
Found at i:7887978 original size:13 final size:13
Alignment explanation
Indices: 7887960--7887993 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
7887950 TAAAATTTTA
7887960 ATAATATTTTATC
1 ATAATATTTTATC
7887973 ATAATATTTTATC
1 ATAATATTTTATC
*
7887986 ACAATATT
1 ATAATATT
7887994 GAAAAATCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (13 bp):
ATAATATTTTATC
Found at i:7889007 original size:6 final size:6
Alignment explanation
Indices: 7888990--7889117 Score: 122
Period size: 6 Copynumber: 21.8 Consensus size: 6
7888980 GACTTGGTTT
* * *
7888990 ATTTTA AGTTTA ATTTT- AGTTTA AGTTTA ATTTTA ATTTTA ATTTTGA
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTT-A
* * * *
7889038 A-TTTA ATGTTA ATTTTT ATTTTA ATTTTG ATTTTG ATTTTA ATTTTA
1 ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA ATTTTA
* *
7889085 ATTTTG ATTTT- ATTTT- TTGTTTA ATTTT- ATTTT
1 ATTTTA ATTTTA ATTTTA AT-TTTA ATTTTA ATTTT
7889118 TTGGTCAAAG
Statistics
Matches: 104, Mismatches: 13, Indels: 11
0.81 0.10 0.09
Matches are distributed among these distances:
5 17 0.16
6 84 0.81
7 3 0.03
ACGTcount: A:0.27, C:0.00, G:0.07, T:0.66
Consensus pattern (6 bp):
ATTTTA
Found at i:7889012 original size:17 final size:17
Alignment explanation
Indices: 7888987--7889024 Score: 67
Period size: 17 Copynumber: 2.2 Consensus size: 17
7888977 TTAGACTTGG
*
7888987 TTTATTTTAAGTTTAAT
1 TTTAGTTTAAGTTTAAT
7889004 TTTAGTTTAAGTTTAAT
1 TTTAGTTTAAGTTTAAT
7889021 TTTA
1 TTTA
7889025 ATTTTAATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (17 bp):
TTTAGTTTAAGTTTAAT
Found at i:7890359 original size:21 final size:21
Alignment explanation
Indices: 7890331--7890423 Score: 76
Period size: 21 Copynumber: 4.8 Consensus size: 21
7890321 GTTACATAAG
7890331 TAATTATA-ATATATATTTGCA
1 TAATTATATATAT-TATTTGCA
*
7890352 TGATTATATATATTATTTGCA
1 TAATTATATATATTATTTGCA
*
7890373 TAATTA-AT-T-TT-TAT--A
1 TAATTATATATATTATTTGCA
*
7890388 T-ATTATATATATTACTTGCA
1 TAATTATATATATTATTTGCA
* *
7890408 TGATTATATTTATTAT
1 TAATTATATATATTAT
7890424 CACATGATTA
Statistics
Matches: 57, Mismatches: 7, Indels: 16
0.71 0.09 0.20
Matches are distributed among these distances:
14 4 0.07
15 4 0.07
16 1 0.02
17 4 0.07
18 3 0.05
19 1 0.02
20 4 0.07
21 32 0.56
22 4 0.07
ACGTcount: A:0.37, C:0.04, G:0.05, T:0.54
Consensus pattern (21 bp):
TAATTATATATATTATTTGCA
Found at i:7890393 original size:35 final size:37
Alignment explanation
Indices: 7890354--7890423 Score: 108
Period size: 35 Copynumber: 1.9 Consensus size: 37
7890344 TATTTGCATG
*
7890354 ATTATATATATTATTTGCATAATTA-ATTT-TTATAT
1 ATTATATATATTACTTGCATAATTATATTTATTATAT
*
7890389 ATTATATATATTACTTGCATGATTATATTTATTAT
1 ATTATATATATTACTTGCATAATTATATTTATTAT
7890424 CACATGATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 23 0.74
36 4 0.13
37 4 0.13
ACGTcount: A:0.36, C:0.04, G:0.04, T:0.56
Consensus pattern (37 bp):
ATTATATATATTACTTGCATAATTATATTTATTATAT
Found at i:7890549 original size:18 final size:17
Alignment explanation
Indices: 7890504--7890549 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 17
7890494 TTTTTGCATA
7890504 ATTA-TTGCATGATATT
1 ATTATTTGCATGATATT
*
7890520 -TT-TTTACATGATATTT
1 ATTATTTGCATGATA-TT
7890536 ATTATTTGCATGAT
1 ATTATTTGCATGAT
7890550 TATATATGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 6
0.75 0.06 0.19
Matches are distributed among these distances:
15 11 0.46
16 2 0.08
17 2 0.08
18 9 0.38
ACGTcount: A:0.28, C:0.07, G:0.11, T:0.54
Consensus pattern (17 bp):
ATTATTTGCATGATATT
Found at i:7890680 original size:25 final size:24
Alignment explanation
Indices: 7890653--7890739 Score: 81
Period size: 25 Copynumber: 3.6 Consensus size: 24
7890643 TTATTTTATT
7890653 TTTATTTTATATTTTATGTATATA
1 TTTATTTTATATTTTATGTATATA
* ** *
7890677 TTTTCTTTTATATCCTATGTATTTA
1 -TTTATTTTATATTTTATGTATATA
7890702 TTTATTATTACTA-TTTAT-TA-ATA
1 TTTATT-TTA-TATTTTATGTATATA
*
7890725 TTTATTTTTTATTTT
1 TTTATTTTATATTTT
7890740 TTTCCTTTTT
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
21 2 0.04
22 5 0.10
23 8 0.16
24 7 0.14
25 26 0.52
26 2 0.04
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.68
Consensus pattern (24 bp):
TTTATTTTATATTTTATGTATATA
Found at i:7890795 original size:24 final size:23
Alignment explanation
Indices: 7890768--7890877 Score: 97
Period size: 24 Copynumber: 4.9 Consensus size: 23
7890758 TCATTTTATT
*
7890768 TTATATGTATTTTTATTTATCTAA
1 TTATAT-TATTTTTATTTATCTTA
7890792 TTATA-TA--TTTATTTATC-TA
1 TTATATTATTTTTATTTATCTTA
*
7890811 TTAT-TTTTTTTTATTTATCTTA
1 TTATATTATTTTTATTTATCTTA
* *
7890833 TAATATTATTGTTGATTTATCTTA
1 TTATATTATT-TTTATTTATCTTA
* *
7890857 TTATTATT-TTTCTAATTATCT
1 TTA-TATTATTTTTATTTATCT
7890878 ATTTTTTTTT
Statistics
Matches: 70, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
19 6 0.09
20 10 0.14
21 10 0.14
22 7 0.10
23 12 0.17
24 21 0.30
25 4 0.06
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.65
Consensus pattern (23 bp):
TTATATTATTTTTATTTATCTTA
Found at i:7890807 original size:41 final size:39
Alignment explanation
Indices: 7890762--7890907 Score: 116
Period size: 41 Copynumber: 3.6 Consensus size: 39
7890752 TCTTTTTCAT
*
7890762 TTTATTTTATATGTATTTTTATTTATCTAATTATATATTTA
1 TTTATTTTATCT-TATTTTTATTTATCTAATTATAT-TTTA
* * * *
7890803 TTTATCTATTAT-TTTTTTTTATTTATCTTATAATATTATTG
1 TTTAT-T-TTATCTTATTTTTATTTATCTAATTATATT-TTA
* * * *
7890844 TTGA-TTTATCTTATTATTATTTTTCTAATTATCTATTTTTT
1 TTTATTTTATCTTATTTTTATTTATCTAATTA--TA-TTTTA
*
7890885 TTTATTTTATCTGATTTTTATTT
1 TTTATTTTATCTTATTTTTATTT
7890908 TGGAAGGCTG
Statistics
Matches: 83, Mismatches: 14, Indels: 15
0.74 0.12 0.13
Matches are distributed among these distances:
38 4 0.05
39 17 0.20
40 1 0.01
41 37 0.45
42 20 0.24
43 4 0.05
ACGTcount: A:0.24, C:0.05, G:0.03, T:0.68
Consensus pattern (39 bp):
TTTATTTTATCTTATTTTTATTTATCTAATTATATTTTA
Found at i:7890825 original size:105 final size:103
Alignment explanation
Indices: 7890620--7890815 Score: 229
Period size: 105 Copynumber: 1.9 Consensus size: 103
7890610 GAAGCCCAAT
* *
7890620 TTTATTTTATATTTTTGTTCTTTTTATTTTATTTTTATTTTATATTTTATGTATATATTTTCTTT
1 TTTATTTTATATTTTTGTTCCTTTTATTTTATTTTTATTTTATATTTTATGTATATATTTTCTAT
*
7890685 TATATCCTATGTATTTATTTATTATTACTATTTATTAATA
66 TATA--CTATGTATTTATCTATTATTACTATTTATTAATA
* * *
7890725 TTTATTTTTTATTTTT-TTCCTTTT-TTTTCTTTTTCATTTTAT-TTTATATGTATTTTTATTTA
1 TTTATTTTATATTTTTGTTCCTTTTATTTTATTTTT-ATTTTATATTT-TATGTA--TATATTT-
*
7890787 TCTAATTATA-TATTTATTTATCTATTATT
61 TCT-ATTATACTATGTATTTATCTATTATT
7890816 TTTTTTTATT
Statistics
Matches: 78, Mismatches: 7, Indels: 12
0.80 0.07 0.12
Matches are distributed among these distances:
103 12 0.15
104 20 0.26
105 32 0.41
106 6 0.08
107 3 0.04
108 5 0.06
ACGTcount: A:0.22, C:0.06, G:0.02, T:0.70
Consensus pattern (103 bp):
TTTATTTTATATTTTTGTTCCTTTTATTTTATTTTTATTTTATATTTTATGTATATATTTTCTAT
TATACTATGTATTTATCTATTATTACTATTTATTAATA
Found at i:7890833 original size:19 final size:19
Alignment explanation
Indices: 7890777--7890908 Score: 77
Period size: 20 Copynumber: 6.3 Consensus size: 19
7890767 TTTATATGTA
* *
7890777 TTTTTATTTATCTAATTATA
1 TTTTTATTTATCTTATT-TT
*
7890797 TATTTATTTATCTATTATTTT
1 TTTTTATTTATC--TTATTTT
7890818 TTTTTATTTATCTTATAATATT
1 TTTTTATTTATCTTAT--T-TT
*
7890840 ATTGTTGATTTATCTTATTATTAT
1 -TT-TTTATTTATCTTA-T-TT-T
*
7890864 TTTTCTAATTATC-TATTTT
1 TTTT-TATTTATCTTATTTT
*
7890883 TTTTTATTTTATCTGATTTT
1 TTTTTA-TTTATCTTATTTT
7890903 TATTTT
1 T-TTTT
7890909 GGAAGGCTGG
Statistics
Matches: 90, Mismatches: 9, Indels: 25
0.73 0.07 0.20
Matches are distributed among these distances:
18 2 0.02
19 14 0.16
20 19 0.21
21 18 0.20
22 10 0.11
23 11 0.12
24 15 0.17
25 1 0.01
ACGTcount: A:0.23, C:0.05, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTTTATTTATCTTATTTT
Found at i:7891401 original size:20 final size:20
Alignment explanation
Indices: 7891364--7891412 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
7891354 TTTGGTGAAC
*
7891364 TTCCGACGAAAAACTCAG-A
1 TTCCGATGAAAAACTCAGAA
*
7891383 TTCCGATGAAAAATTTCAGAA
1 TTCCGATGAAAAA-CTCAGAA
7891404 TT-CGATGAA
1 TTCCGATGAA
7891413 CATTCAATCG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 12 0.46
20 11 0.42
21 3 0.12
ACGTcount: A:0.41, C:0.18, G:0.16, T:0.24
Consensus pattern (20 bp):
TTCCGATGAAAAACTCAGAA
Found at i:7891756 original size:5 final size:5
Alignment explanation
Indices: 7891746--7891877 Score: 62
Period size: 5 Copynumber: 25.4 Consensus size: 5
7891736 GCTCTAGATT
*
7891746 TTTTA TTTTA -TTTA -TTTA TTTCTT TATTTA TTTT- TTTTA -TTTA TTAGATTA
1 TTTTA TTTTA TTTTA TTTTA TTT-TA T-TTTA TTTTA TTTTA TTTTA TT---TTA
* * *
7891797 GGTTTA TTTAATA TTCT- TTTTA TCTTTA TTTTA TTTTTA TTTTTG TTTTA
1 -TTTTA TTT--TA TTTTA TTTTA T-TTTA TTTTA -TTTTA -TTTTA TTTTA
*
7891847 CTTT- TTTTA -TTTA TTTATA TTTTA TTTTA TT
1 TTTTA TTTTA TTTTA TTT-TA TTTTA TTTTA TT
7891878 ATTCTATTTT
Statistics
Matches: 100, Mismatches: 10, Indels: 34
0.69 0.07 0.24
Matches are distributed among these distances:
4 26 0.26
5 37 0.37
6 27 0.27
7 6 0.06
8 3 0.03
9 1 0.01
ACGTcount: A:0.20, C:0.03, G:0.03, T:0.74
Consensus pattern (5 bp):
TTTTA
Found at i:7891771 original size:12 final size:12
Alignment explanation
Indices: 7891756--7891790 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
7891746 TTTTATTTTA
7891756 TTTATTTATTTC
1 TTTATTTATTTC
*
7891768 TTTATTTATTTTT
1 TTTATTTA-TTTC
7891781 TTTATTTATT
1 TTTATTTATT
7891791 AGATTAGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (12 bp):
TTTATTTATTTC
Found at i:7891806 original size:4 final size:4
Alignment explanation
Indices: 7891743--7891790 Score: 53
Period size: 4 Copynumber: 11.8 Consensus size: 4
7891733 GCCGCTCTAG
* *
7891743 ATTT -TTT ATTTT ATTT ATTT ATTT CTTT ATTT ATTTT TTTT ATTT ATT
1 ATTT ATTT A-TTT ATTT ATTT ATTT ATTT ATTT A-TTT ATTT ATTT ATT
7891791 AGATTAGGTT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
3 3 0.08
4 27 0.73
5 7 0.19
ACGTcount: A:0.19, C:0.02, G:0.00, T:0.79
Consensus pattern (4 bp):
ATTT
Found at i:7891852 original size:24 final size:23
Alignment explanation
Indices: 7891815--7891887 Score: 85
Period size: 23 Copynumber: 3.1 Consensus size: 23
7891805 TAATATTCTT
7891815 TTTATCTTTATTTTATT-TTTATT
1 TTTAT-TTTATTTTATTATTTATT
* *
7891838 TTTGTTTTACTTTTTTTATTTATT
1 TTTATTTTA-TTTTATTATTTATT
*
7891862 TATATTTTATTTTATTATTCTATT
1 TTTATTTTATTTTATTATT-TATT
7891886 TT
1 TT
7891888 CTTTAAATAA
Statistics
Matches: 41, Mismatches: 6, Indels: 5
0.79 0.12 0.10
Matches are distributed among these distances:
22 4 0.10
23 19 0.46
24 18 0.44
ACGTcount: A:0.18, C:0.04, G:0.01, T:0.77
Consensus pattern (23 bp):
TTTATTTTATTTTATTATTTATT
Found at i:7891976 original size:59 final size:59
Alignment explanation
Indices: 7891902--7892298 Score: 469
Period size: 60 Copynumber: 6.7 Consensus size: 59
7891892 AAATAAAAAT
* * *
7891902 AAAAAAAATATTTTTGGGGAAAAGTTGAGAGTATCAATTTTTCTTAAAAATAAATTTTCA
1 AAAAAAAAT-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
* ** * *
7891962 AAAAAAGATTTTTT-GAAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCA
1 AAAAAAAATTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCA
* *
7892021 AAAAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
1 AAAAAAAAT-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
* *
7892081 AAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
1 AAAAAAAAT-TTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
* ** * * * * *
7892141 AAAAAATA-TTTTTAAGTAAAAGTTGAAAGCATCAATTTTTCTTGAAAATCAAAGTTTCA
1 AAAAAAAATTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTCA
* * * * *
7892200 GAAAAATATTTTTT-GAGAAAAGTTGAAAGTATTAATTTTCCTTAAAAATAAATTTTCA
1 AAAAAAAATTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
*
7892258 AAAAAATCAA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAA--AATTTTTTGGGGAAAAGTTGAAAGTATCAATTTT
7892299 TCTGCACAAA
Statistics
Matches: 293, Mismatches: 36, Indels: 16
0.85 0.10 0.05
Matches are distributed among these distances:
58 79 0.27
59 69 0.24
60 112 0.38
61 33 0.11
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.36
Consensus pattern (59 bp):
AAAAAAAATTTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
Found at i:7892046 original size:119 final size:116
Alignment explanation
Indices: 7891903--7892301 Score: 548
Period size: 119 Copynumber: 3.4 Consensus size: 116
7891893 AATAAAAATA
* * * *
7891903 AAAAAAATATTTTTGGGGAAAAGTTGAGAGTATCAATTTTTCTTAAAAATAAATTTTCAAAAAAA
1 AAAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAA
* * *
7891968 GATTTTTTGAAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
66 AATTTTTTGAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
*
7892020 AAAAAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCAAAAA
1 --AAAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAA
7892085 AAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
64 AAAAT-TTTTTGA-AAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * * *
7892140 AAAAAAATA-TTTTTAAGTAAAAGTTGAAAGCATCAATTTTTCTTGAAAATCAAAGTTTCAGAAA
1 AAAAAAATATTTTTTGAG-AAAAGTTGAAAGTATCAATTTTTCTTAAAAAT-AAAATTTCAAAAA
* * * *
7892204 AATATTTTTTGAGAAAAGTTGAAAGTATTAATTTTCCTTAAAAATAAATTTTC
64 AAAATTTTTTGAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
*
7892257 AAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCT
1 AAAAAAAT-ATTTTTTGA-GAAAAGTTGAAAGTATCAATTTTTCT
7892302 GCACAAAAAC
Statistics
Matches: 253, Mismatches: 20, Indels: 14
0.88 0.07 0.05
Matches are distributed among these distances:
117 53 0.21
118 46 0.18
119 107 0.42
120 15 0.06
121 32 0.13
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.36
Consensus pattern (116 bp):
AAAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCAAAAAAA
AATTTTTTGAAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:7892082 original size:60 final size:58
Alignment explanation
Indices: 7891903--7892298 Score: 533
Period size: 58 Copynumber: 6.7 Consensus size: 58
7891893 AATAAAAATA
* * * * *
7891903 AAAAAAATATTTTTGGGGAAAAGTTGAGAGTATCAATTTTTCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * *
7891961 AAAAAAAGATTTTTTGAAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTC
1 AAAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
7892020 AAAAAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 --AAAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
*
7892080 AAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
1 AAAAAAATAT-TTTTTGAG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
* * * * *
7892140 AAAAAAATA-TTTTTAAGTAAAAGTTGAAAGCATCAATTTTTCTTGAAAATCAAAGTTTC
1 AAAAAAATATTTTTTGAG-AAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAAATTTC
* * *
7892199 AGAAAAATATTTTTTGAGAAAAGTTGAAAGTATTAATTTTCCTTAAAAATAAATTTTC
1 AAAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
*
7892257 AAAAAAATCAATTTTTGAGGAAAAGTTGAAAGTATCAATTTT
1 AAAAAAAT-ATTTTTTGA-GAAAAGTTGAAAGTATCAATTTT
7892299 TCTGCACAAA
Statistics
Matches: 299, Mismatches: 30, Indels: 16
0.87 0.09 0.05
Matches are distributed among these distances:
58 102 0.34
59 66 0.22
60 84 0.28
61 47 0.16
ACGTcount: A:0.47, C:0.07, G:0.11, T:0.36
Consensus pattern (58 bp):
AAAAAAATATTTTTTGAGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTC
Found at i:7892340 original size:6 final size:6
Alignment explanation
Indices: 7892329--7892361 Score: 59
Period size: 6 Copynumber: 5.7 Consensus size: 6
7892319 CTTTCCCTCC
7892329 TTTTTA TTTTTA TTTTTA TTTTTA TTTTT- TTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTT
7892362 AAATAATCCG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
5 4 0.15
6 23 0.85
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (6 bp):
TTTTTA
Found at i:7892803 original size:18 final size:18
Alignment explanation
Indices: 7892780--7892845 Score: 59
Period size: 18 Copynumber: 3.7 Consensus size: 18
7892770 TTATGACAAT
7892780 ATATTTGCATGATATTTA
1 ATATTTGCATGATATTTA
7892798 ATATTTGCAT-A-ATTATA
1 ATATTTGCATGATATT-TA
*
7892815 A-ATTGGCATGATTATTTA
1 ATATTTGCATGA-TATTTA
*
7892833 CT-TATTGCATGAT
1 ATAT-TTGCATGAT
7892846 GGCATGATGG
Statistics
Matches: 39, Mismatches: 3, Indels: 12
0.72 0.06 0.22
Matches are distributed among these distances:
16 10 0.26
17 5 0.13
18 14 0.36
19 10 0.26
ACGTcount: A:0.33, C:0.08, G:0.12, T:0.47
Consensus pattern (18 bp):
ATATTTGCATGATATTTA
Found at i:7896870 original size:23 final size:23
Alignment explanation
Indices: 7896844--7896887 Score: 70
Period size: 23 Copynumber: 1.9 Consensus size: 23
7896834 TACTTTTACA
*
7896844 TTTCATGCATTACGTTCATTGTG
1 TTTCATGCATTACATTCATTGTG
*
7896867 TTTCATGCATTGCATTCATTG
1 TTTCATGCATTACATTCATTG
7896888 CATCCATTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.18, C:0.18, G:0.16, T:0.48
Consensus pattern (23 bp):
TTTCATGCATTACATTCATTGTG
Found at i:7897352 original size:37 final size:38
Alignment explanation
Indices: 7897217--7897380 Score: 127
Period size: 38 Copynumber: 4.3 Consensus size: 38
7897207 ATATATCCAT
** * * * *
7897217 TTTATTTTTCAAAAGTCAAAGCCTCAGT-AGAGAAATCC
1 TTTATTTTTCAAAAGTTGAAGTCTTAGTGAAAG-AATAC
* * * *
7897255 TTTGTTTTTCAAAAGTTGAAGCCTTAGTGAAATAGTAC
1 TTTATTTTTCAAAAGTTGAAGTCTTAGTGAAAGAATAC
** *
7897293 TTTATTTTTCAAAAGTCAAAGTCTT-GATGAAGGAATAC
1 TTTATTTTTCAAAAGTTGAAGTCTTAG-TGAAAGAATAC
** * *
7897331 TTT-TTTTTCAAAAGTTGAAGTCTCGGTGGAATAATAC
1 TTTATTTTTCAAAAGTTGAAGTCTTAGTGAAAGAATAC
7897368 TTTATTTTGTCAA
1 TTTATTTT-TCAA
7897381 GTCGAAGTCT
Statistics
Matches: 100, Mismatches: 21, Indels: 9
0.77 0.16 0.07
Matches are distributed among these distances:
37 30 0.30
38 64 0.64
39 6 0.06
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (38 bp):
TTTATTTTTCAAAAGTTGAAGTCTTAGTGAAAGAATAC
Found at i:7897369 original size:75 final size:76
Alignment explanation
Indices: 7897217--7897380 Score: 199
Period size: 75 Copynumber: 2.2 Consensus size: 76
7897207 ATATATCCAT
* *
7897217 TTTATTTTTCAAAAGTCAAAGCCTCAGTAGAGAAATCCTTTGTTTTTCAAAAGTTGAAGCCTTAG
1 TTTATTTTTCAAAAGTCAAAGCCTCAGTAGAGAAATACTTTGTTTTTCAAAAGTTGAAGCCTCAG
*
7897282 TGAAATAGTAC
66 TGAAATAATAC
* * * *
7897293 TTTATTTTTCAAAAGTCAAAGTCT-TG-ATGAAGGAATACTTT-TTTTTCAAAAGTTGAAGTCTC
1 TTTATTTTTCAAAAGTCAAAGCCTCAGTA-G-AGAAATACTTTGTTTTTCAAAAGTTGAAGCCTC
* *
7897355 GGTGGAATAATAC
64 AGTGAAATAATAC
7897368 TTTATTTTGTCAA
1 TTTATTTT-TCAA
7897381 GTCGAAGTCT
Statistics
Matches: 76, Mismatches: 9, Indels: 6
0.84 0.10 0.07
Matches are distributed among these distances:
74 1 0.01
75 39 0.51
76 36 0.47
ACGTcount: A:0.33, C:0.12, G:0.16, T:0.39
Consensus pattern (76 bp):
TTTATTTTTCAAAAGTCAAAGCCTCAGTAGAGAAATACTTTGTTTTTCAAAAGTTGAAGCCTCAG
TGAAATAATAC
Found at i:7897398 original size:37 final size:36
Alignment explanation
Indices: 7897285--7897398 Score: 88
Period size: 37 Copynumber: 3.1 Consensus size: 36
7897275 GCCTTAGTGA
* * **
7897285 AATAGTACTTTATTTTTCAAAAGTCAAAGTCTTGAT-G
1 AATAATACTTT-TTTTTC-AAAGTCGAAGTCTCAATGG
* * **
7897322 AAGGAATACTTTTTTTTCAAAAGTTGAAGTCTCGGTGG
1 AA-TAATACTTTTTTTTC-AAAGTCGAAGTCTCAATGG
7897360 AATAATACTTTATTTTGTC-AAGTCGAAGTCTCAATGG
1 AATAATACTTT-TTTT-TCAAAGTCGAAGTCTCAATGG
7897397 AA
1 AA
7897399 GAGTGCTTTG
Statistics
Matches: 63, Mismatches: 10, Indels: 8
0.78 0.12 0.10
Matches are distributed among these distances:
37 47 0.75
38 14 0.22
39 2 0.03
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (36 bp):
AATAATACTTTTTTTTCAAAGTCGAAGTCTCAATGG
Found at i:7897692 original size:6 final size:6
Alignment explanation
Indices: 7897683--7897762 Score: 74
Period size: 6 Copynumber: 13.5 Consensus size: 6
7897673 TTGGATTTGG
* * *
7897683 TTAATT TTAATT TTAATT TTAATT TTAATT TTGATT TTGATT TTGATT
1 TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT
** * *
7897731 TTTGTT TT-ATT TT-TTGT TTAATT TTATTT TTA
1 TTAATT TTAATT TTAAT-T TTAATT TTAATT TTA
7897763 GGTCAAAGTT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
5 5 0.08
6 59 0.91
7 1 0.02
ACGTcount: A:0.23, C:0.00, G:0.06, T:0.71
Consensus pattern (6 bp):
TTAATT
Found at i:7898776 original size:12 final size:11
Alignment explanation
Indices: 7898755--7898826 Score: 58
Period size: 12 Copynumber: 6.2 Consensus size: 11
7898745 CCAGCGTAAG
7898755 TTTTCTTTTTTA
1 TTTT-TTTTTTA
7898767 TTTTTATTTTTA
1 TTTTT-TTTTTA
*
7898779 TTTTTGTTTTA
1 TTTTTTTTTTA
7898790 TTTTTCTTTTT-
1 TTTTT-TTTTTA
7898801 TTATTTTGTTCTT-
1 TT-TTTT-TT-TTA
*
7898814 TTTCTTTTTTA
1 TTTTTTTTTTA
7898825 TT
1 TT
7898827 CTATATTTTA
Statistics
Matches: 51, Mismatches: 3, Indels: 13
0.76 0.04 0.19
Matches are distributed among these distances:
10 2 0.04
11 18 0.35
12 27 0.53
13 4 0.08
ACGTcount: A:0.08, C:0.06, G:0.03, T:0.83
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:7898788 original size:17 final size:17
Alignment explanation
Indices: 7898768--7898800 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
7898758 TCTTTTTTAT
7898768 TTTTATTTTTATTTTTG
1 TTTTATTTTTATTTTTG
*
7898785 TTTTATTTTTCTTTTT
1 TTTTATTTTTATTTTT
7898801 TTATTTTGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.09, C:0.03, G:0.03, T:0.85
Consensus pattern (17 bp):
TTTTATTTTTATTTTTG
Found at i:7898788 original size:23 final size:22
Alignment explanation
Indices: 7898762--7898844 Score: 69
Period size: 23 Copynumber: 3.6 Consensus size: 22
7898752 AAGTTTTCTT
7898762 TTTTATTTTTATTTTTATTTTTG
1 TTTTATTTTT-TTTTTATTTTTG
*
7898785 TTTTATTTTTCTTTTTTTATTTTG
1 TTTTATTTTT-TTTTTAT-TTTTG
* * *
7898809 TTCTT-TTTCTTTTTTATTCTATA
1 TT-TTATTTTTTTTTTATT-TTTG
*
7898832 TTTTATTATTTTT
1 TTTTATTTTTTTT
7898845 AATTATTAAT
Statistics
Matches: 48, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
22 3 0.06
23 32 0.67
24 11 0.23
25 2 0.04
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.81
Consensus pattern (22 bp):
TTTTATTTTTTTTTTATTTTTG
Found at i:7898799 original size:22 final size:21
Alignment explanation
Indices: 7898755--7898823 Score: 75
Period size: 22 Copynumber: 3.1 Consensus size: 21
7898745 CCAGCGTAAG
* *
7898755 TTTTCTTTTTTATTTTTATTT
1 TTTTATTTTTTATTTTTCTTT
*
7898776 TTATTTTTGTTTTATTTTTCTTT
1 TT-TTATT-TTTTATTTTTCTTT
*
7898799 TTTTATTTTGTTCTTTTTCTTT
1 TTTTATTTT-TTATTTTTCTTT
7898821 TTT
1 TTT
7898824 ATTCTATATT
Statistics
Matches: 41, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
21 4 0.10
22 22 0.54
23 15 0.37
ACGTcount: A:0.07, C:0.06, G:0.03, T:0.84
Consensus pattern (21 bp):
TTTTATTTTTTATTTTTCTTT
Found at i:7898822 original size:6 final size:6
Alignment explanation
Indices: 7898761--7898800 Score: 55
Period size: 6 Copynumber: 6.8 Consensus size: 6
7898751 TAAGTTTTCT
* *
7898761 TTTTTA TTTTTA TTTTTA TTTTT- GTTTTA TTTTTC TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
7898801 TTATTTTGTT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
5 4 0.13
6 26 0.87
ACGTcount: A:0.10, C:0.03, G:0.03, T:0.85
Consensus pattern (6 bp):
TTTTTA
Found at i:7898987 original size:20 final size:20
Alignment explanation
Indices: 7898962--7899098 Score: 104
Period size: 20 Copynumber: 6.6 Consensus size: 20
7898952 AGTAATTATA
7898962 ATATATATATTTGCATGATT
1 ATATATATATTTGCATGATT
*
7898982 ATATATATTATTTGCATAATT
1 ATATATA-TATTTGCATGATT
7899003 A-AT-T-TATTACTGCATGATT
1 ATATATATATT--TGCATGATT
*
7899022 ATATTTAT-TATTGCATGATT
1 ATATATATAT-TTGCATGATT
*
7899042 ATGAATATATTTATTTGTATGATT
1 AT--ATATA--TATTTGCATGATT
*
7899066 -TATTAATATATTTACATGATT
1 ATA-T-ATATATTTGCATGATT
*
7899087 ATAAATATATTT
1 ATATATATATTT
7899099 ATTTGTGTGA
Statistics
Matches: 95, Mismatches: 7, Indels: 30
0.72 0.05 0.23
Matches are distributed among these distances:
17 4 0.04
19 10 0.11
20 30 0.32
21 27 0.28
22 9 0.09
23 4 0.04
24 10 0.11
25 1 0.01
ACGTcount: A:0.36, C:0.04, G:0.08, T:0.52
Consensus pattern (20 bp):
ATATATATATTTGCATGATT
Found at i:7899050 original size:26 final size:25
Alignment explanation
Indices: 7899016--7899113 Score: 82
Period size: 25 Copynumber: 4.1 Consensus size: 25
7899006 TTATTACTGC
*
7899016 ATGATTATATTTATTATTGCATGA-TT
1 ATGAATATATTTA-T-TTGCATGATTT
*
7899042 ATGAATATATTTATTTGTATGATTT
1 ATGAATATATTTATTTGCATGATTT
*
7899067 ATTAATATATTTA----CATGA-TT
1 ATGAATATATTTATTTGCATGATTT
* **
7899087 ATAAATATATTTATTTGTGTGATTT
1 ATGAATATATTTATTTGCATGATTT
7899112 AT
1 AT
7899114 TTTATATAAT
Statistics
Matches: 59, Mismatches: 7, Indels: 13
0.75 0.09 0.16
Matches are distributed among these distances:
20 14 0.24
21 4 0.07
24 10 0.17
25 19 0.32
26 12 0.20
ACGTcount: A:0.34, C:0.02, G:0.10, T:0.54
Consensus pattern (25 bp):
ATGAATATATTTATTTGCATGATTT
Found at i:7899063 original size:24 final size:24
Alignment explanation
Indices: 7899016--7899103 Score: 85
Period size: 25 Copynumber: 3.7 Consensus size: 24
7899006 TTATTACTGC
*
7899016 ATGATTATATTTATTATTGCATGATT
1 ATGAATATATTTA-T-TTGCATGATT
*
7899042 ATGAATATATTTATTTGTATGATTT
1 ATGAATATATTTATTTGCATGA-TT
*
7899067 ATTAATATATTTA----CATGATT
1 ATGAATATATTTATTTGCATGATT
*
7899087 ATAAATATATTTATTTG
1 ATGAATATATTTATTTG
7899104 TGTGATTTAT
Statistics
Matches: 52, Mismatches: 5, Indels: 12
0.75 0.07 0.17
Matches are distributed among these distances:
20 14 0.27
21 4 0.08
24 7 0.13
25 15 0.29
26 12 0.23
ACGTcount: A:0.35, C:0.02, G:0.09, T:0.53
Consensus pattern (24 bp):
ATGAATATATTTATTTGCATGATT
Found at i:7899067 original size:39 final size:40
Alignment explanation
Indices: 7899024--7899114 Score: 103
Period size: 45 Copynumber: 2.2 Consensus size: 40
7899014 GCATGATTAT
* *
7899024 ATTTATTA-TTGCATGATTATGAATATATTTATTTGTATG
1 ATTTATTATTTACATGATTATAAATATATTTATTTGTATG
*
7899063 ATTTATTAATATATTTACATGATTATAAATATATTTATTTGTGTG
1 A--T-TT-AT-TATTTACATGATTATAAATATATTTATTTGTATG
7899108 ATTTATT
1 ATTTATT
7899115 TTATATAATT
Statistics
Matches: 43, Mismatches: 3, Indels: 11
0.75 0.05 0.19
Matches are distributed among these distances:
39 1 0.02
40 1 0.02
41 3 0.07
42 4 0.09
43 3 0.07
44 2 0.05
45 29 0.67
ACGTcount: A:0.33, C:0.02, G:0.10, T:0.55
Consensus pattern (40 bp):
ATTTATTATTTACATGATTATAAATATATTTATTTGTATG
Found at i:7899086 original size:45 final size:46
Alignment explanation
Indices: 7899035--7899132 Score: 144
Period size: 45 Copynumber: 2.2 Consensus size: 46
7899025 TTTATTATTG
* *
7899035 CATGATTATGAATATATTTATTTGTATGATTTA-TTAATATATTTA
1 CATGATTATAAATATATTTATTTGTATGATTTATTTAATATAATTA
* * *
7899080 CATGATTATAAATATATTTATTTGTGTGATTTATTTTATATAATTG
1 CATGATTATAAATATATTTATTTGTATGATTTATTTAATATAATTA
7899126 CATGATT
1 CATGATT
7899133 TTTCTGGCAT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
45 31 0.66
46 16 0.34
ACGTcount: A:0.34, C:0.03, G:0.10, T:0.53
Consensus pattern (46 bp):
CATGATTATAAATATATTTATTTGTATGATTTATTTAATATAATTA
Found at i:7899174 original size:25 final size:25
Alignment explanation
Indices: 7899122--7899171 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
7899112 ATTTTATATA
*
7899122 ATTGCATGATTTTTCTGGCATGATT
1 ATTGCATGATTTTTCTGACATGATT
* *
7899147 ATTGCATGATATTTTTTTACATGAT
1 ATTGCATGAT-TTTTCTGACATGAT
7899172 ATTTATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.24, C:0.10, G:0.16, T:0.50
Consensus pattern (25 bp):
ATTGCATGATTTTTCTGACATGATT
Found at i:7899196 original size:36 final size:34
Alignment explanation
Indices: 7899148--7899223 Score: 95
Period size: 34 Copynumber: 2.3 Consensus size: 34
7899138 GGCATGATTA
*
7899148 TTGCATGA-TAT-TTT-TTTACATGATATTTATTAT
1 TTGCATGATTATATTTATTTACATGAT-TATA-TAT
*
7899181 TTGTATGATTATATTTATTTACATGATTATATAT
1 TTGCATGATTATATTTATTTACATGATTATATAT
7899215 TTGCATGAT
1 TTGCATGAT
7899224 ATTTAATATT
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
33 7 0.19
34 14 0.38
35 6 0.16
36 10 0.27
ACGTcount: A:0.29, C:0.05, G:0.11, T:0.55
Consensus pattern (34 bp):
TTGCATGATTATATTTATTTACATGATTATATAT
Found at i:7899234 original size:18 final size:16
Alignment explanation
Indices: 7899148--7899241 Score: 75
Period size: 18 Copynumber: 5.6 Consensus size: 16
7899138 GGCATGATTA
7899148 TTGCATGATATTTT-T
1 TTGCATGATATTTTAT
*
7899163 TTACATGATATTTATTAT
1 TTGCATGATA-TT-TTAT
*
7899181 TTGTATGATTATATTTAT
1 TTGCATGA-TAT-TTTAT
* *
7899199 TTACATGAT-TATATAT
1 TTGCATGATAT-TTTAT
7899215 TTGCATGATATTTAATAT
1 TTGCATGATATTT--TAT
7899233 TTGCATGAT
1 TTGCATGAT
7899242 TTTATGTTGG
Statistics
Matches: 63, Mismatches: 8, Indels: 13
0.75 0.10 0.15
Matches are distributed among these distances:
15 9 0.14
16 17 0.27
17 4 0.06
18 30 0.48
19 3 0.05
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.54
Consensus pattern (16 bp):
TTGCATGATATTTTAT
Found at i:7899234 original size:34 final size:32
Alignment explanation
Indices: 7899148--7899246 Score: 94
Period size: 34 Copynumber: 2.9 Consensus size: 32
7899138 GGCATGATTA
7899148 TTGCATGA-TATTTTTTTACATGATATTTATTAT
1 TTGCATGATTATTTTTTTACATGAT-TTTA-TAT
* *
7899181 TTGTATGATTATATTTATTTACATGATTATATAT
1 TTGCATGATTAT-TTT-TTTACATGATTTTATAT
*
7899215 TTGCATGA-TATTTAATATTTGCATGATTTTAT
1 TTGCATGATTATTT--T-TTTACATGATTTTAT
7899247 GTTGGCACGA
Statistics
Matches: 56, Mismatches: 5, Indels: 9
0.80 0.07 0.13
Matches are distributed among these distances:
32 2 0.04
33 10 0.18
34 28 0.50
35 6 0.11
36 10 0.18
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.56
Consensus pattern (32 bp):
TTGCATGATTATTTTTTTACATGATTTTATAT
Found at i:7899808 original size:31 final size:32
Alignment explanation
Indices: 7899739--7899815 Score: 86
Period size: 31 Copynumber: 2.5 Consensus size: 32
7899729 TATATTAAAA
* * * *
7899739 AATTAAATTTTAAATTTCGTGTGAGTATAGGG
1 AATTAAATTTTAAATATCGTATAAGTACAGGG
*
7899771 AA-TAAATTTTAAATATCGTATAAGTACA-TG
1 AATTAAATTTTAAATATCGTATAAGTACAGGG
*
7899801 AATTAAATTTGAAAT
1 AATTAAATTTTAAAT
7899816 TTTAAGTGAG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
30 3 0.08
31 33 0.87
32 2 0.05
ACGTcount: A:0.43, C:0.04, G:0.14, T:0.39
Consensus pattern (32 bp):
AATTAAATTTTAAATATCGTATAAGTACAGGG
Done.