Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 37 of 195
Found at i:7907385 original size:3 final size:3
Alignment explanation
Indices: 7907372--7907404 Score: 57
Period size: 3 Copynumber: 10.7 Consensus size: 3
7907362 AATGAAAAGC
7907372 AAG AGAG AAG AAG AAG AAG AAG AAG AAG AAG AA
1 AAG A-AG AAG AAG AAG AAG AAG AAG AAG AAG AA
7907405 ATGGCGGGGG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
3 26 0.90
4 3 0.10
ACGTcount: A:0.67, C:0.00, G:0.33, T:0.00
Consensus pattern (3 bp):
AAG
Found at i:7909590 original size:17 final size:18
Alignment explanation
Indices: 7909553--7909592 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
7909543 TTGAAATATA
7909553 AAAATAAAAAAAAACTTGT
1 AAAATAAAAAAAAAC-TGT
*
7909572 AAAATGAAAAAAAAC-GT
1 AAAATAAAAAAAAACTGT
7909589 AAAA
1 AAAA
7909593 GTTAGATAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 6 0.30
19 14 0.70
ACGTcount: A:0.72, C:0.05, G:0.07, T:0.15
Consensus pattern (18 bp):
AAAATAAAAAAAAACTGT
Found at i:7911399 original size:16 final size:15
Alignment explanation
Indices: 7911378--7911408 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
7911368 AAGTCAACTT
7911378 AAAAAAGAAACAAAAA
1 AAAAAAGAAA-AAAAA
7911394 AAAAAAGAAAAAAAA
1 AAAAAAGAAAAAAAA
7911409 TACAAATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 5 0.33
16 10 0.67
ACGTcount: A:0.90, C:0.03, G:0.06, T:0.00
Consensus pattern (15 bp):
AAAAAAGAAAAAAAA
Found at i:7919894 original size:60 final size:60
Alignment explanation
Indices: 7919705--7919896 Score: 178
Period size: 61 Copynumber: 3.1 Consensus size: 60
7919695 CTACAATACC
* * * *
7919705 ATAATTACTA-AAATACTTCTCTACTTATAATTAACTAAAATTATTATAATACC-CTCTTATA
1 ATAATTA-TAGAAATACCTC-CTAC-CATAATTAGCTAAAATTATTATAATACCTCTCATATA
* * *
7919766 ATAATTATAGAAATACCATTCCTACCATAATTAGCTAAAATTACTACAATACCTCTCCTACTA
1 ATAATTATAGAAATACC--TCCTACCATAATTAGCTAAAATTATTATAATACCTCTCATA-TA
* ** *
7919829 A-AATTAT-GAAAATACC-CCTAGCATAATTATTTAAAAATTATTATAATACCTTTCATATA
1 ATAATTATAG-AAATACCTCCTACCATAATTAGCT-AAAATTATTATAATACCTCTCATATA
7919888 ATAATTATA
1 ATAATTATA
7919897 CAAAGGCTTT
Statistics
Matches: 109, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
59 16 0.15
60 28 0.26
61 38 0.35
62 22 0.20
63 5 0.05
ACGTcount: A:0.44, C:0.17, G:0.02, T:0.37
Consensus pattern (60 bp):
ATAATTATAGAAATACCTCCTACCATAATTAGCTAAAATTATTATAATACCTCTCATATA
Found at i:7920090 original size:129 final size:127
Alignment explanation
Indices: 7919932--7920235 Score: 326
Period size: 129 Copynumber: 2.4 Consensus size: 127
7919922 AGAAGTTGAC
* * * *
7919932 ATGTGACATTTTTTTCAAAATTATTATAATA-CTTCTATAAAATTATATATTAAATTTTAAAATA
1 ATGTGACATTTTTTTCAAAATTACTATAATACCCT-TATAAAATTACATATGAAATTTTAAAATA
* ** * * * * *
7919996 ATATGAAATTAAACTACTTATTAAATTATTAATATATCCTTTTCATTACTTTATAAAAATTTTAT
65 ATATAAAATT-AACTAAGTATTAAATTAGTAAAATA-CCCTTGCATTACTTCATAAAAATTTTAT
* * *
7920061 ATGTGATATTTTATTT-AAAATTACTATAATACCCTTATTAAATTACATATGAAATTTTAATATA
1 ATGTGACATTTT-TTTCAAAATTACTATAATACCCTTATAAAATTACATATGAAATTTTAAAATA
* * *
7920125 ATATAAAATTAACTAAGTATTAAATTAGTAAAATACCCTTGCATTACTTCATAAATACTTTGAC
65 ATATAAAATTAACTAAGTATTAAATTAGTAAAATACCCTTGCATTACTTCATAAA-AATTTTAT
* * * *
7920189 ACGTGGA-ATTTTGTTTGAAATTTACTATAATACCCTTATTAAATTAC
1 ATGT-GACATTTT-TTTCAAAATTACTATAATACCCTTATAAAATTAC
7920236 TTGTTAAATG
Statistics
Matches: 149, Mismatches: 21, Indels: 10
0.83 0.12 0.06
Matches are distributed among these distances:
127 17 0.11
128 37 0.25
129 90 0.60
130 5 0.03
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (127 bp):
ATGTGACATTTTTTTCAAAATTACTATAATACCCTTATAAAATTACATATGAAATTTTAAAATAA
TATAAAATTAACTAAGTATTAAATTAGTAAAATACCCTTGCATTACTTCATAAAAATTTTAT
Found at i:7920504 original size:19 final size:19
Alignment explanation
Indices: 7920480--7920526 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
7920470 ATATTCATAC
7920480 TACCATAATCGACCAAAAT
1 TACCATAATCGACCAAAAT
* *
7920499 TACCATAATTGATCAAAAT
1 TACCATAATCGACCAAAAT
*
7920518 TACTATAAT
1 TACCATAAT
7920527 ACCTCTCATA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 25 1.00
ACGTcount: A:0.47, C:0.19, G:0.04, T:0.30
Consensus pattern (19 bp):
TACCATAATCGACCAAAAT
Found at i:7921949 original size:18 final size:18
Alignment explanation
Indices: 7921909--7921951 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
7921899 AAATATTTTG
*
7921909 AATTTTTTAAAAAAATTT
1 AATTTTTTAAAAAAATTA
* *
7921927 TATTTTTTAAAAATATTA
1 AATTTTTTAAAAAAATTA
7921945 AATTTTT
1 AATTTTT
7921952 AAATTTTCAA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (18 bp):
AATTTTTTAAAAAAATTA
Found at i:7921979 original size:13 final size:13
Alignment explanation
Indices: 7921961--7921994 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
7921951 TAAATTTTCA
7921961 ATAATATTTTATC
1 ATAATATTTTATC
7921974 ATAATATTTTATC
1 ATAATATTTTATC
*
7921987 ACAATATT
1 ATAATATT
7921995 GAAAAATCTA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (13 bp):
ATAATATTTTATC
Found at i:7922813 original size:16 final size:15
Alignment explanation
Indices: 7922788--7922817 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
7922778 TGTTAATTTA
7922788 AATTATTAATATAAT
1 AATTATTAATATAAT
7922803 AATTGATTAATATAA
1 AATT-ATTAATATAA
7922818 ATGATAATAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.53, C:0.00, G:0.03, T:0.43
Consensus pattern (15 bp):
AATTATTAATATAAT
Found at i:7923052 original size:6 final size:6
Alignment explanation
Indices: 7923001--7923139 Score: 124
Period size: 6 Copynumber: 23.5 Consensus size: 6
7922991 TTAGACTTGG
* * * *
7923001 TTAATT TTAACT TTAATT TT-AGT TTAAGT TTAAGT TTAATT TTAATT
1 TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT
* * * * *
7923048 TTAATT TTGAA-T TTAATG TTAATT TTTATT TTTATT TTGATT TTGATT
1 TTAATT TT-AATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT
* * *
7923096 TTAATT TTAATT TTGATT TT-ATT TT-TTGT TTAATT TTACTT TTA
1 TTAATT TTAATT TTAATT TTAATT TTAAT-T TTAATT TTAATT TTA
7923140 GGTCAAAGCA
Statistics
Matches: 115, Mismatches: 13, Indels: 10
0.83 0.09 0.07
Matches are distributed among these distances:
5 12 0.10
6 100 0.87
7 3 0.03
ACGTcount: A:0.27, C:0.01, G:0.06, T:0.65
Consensus pattern (6 bp):
TTAATT
Found at i:7924240 original size:22 final size:23
Alignment explanation
Indices: 7924186--7924234 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
7924176 TTATTTTTGT
7924186 TTTTTTATT-TGTTTCTTTTTCC
1 TTTTTTATTATGTTTCTTTTTCC
7924208 TTTTTTATTATGTTT-TTTATTCC
1 TTTTTTATTATGTTTCTTT-TTCC
7924231 TTTT
1 TTTT
7924235 AATTATTGAT
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 12 0.48
23 13 0.52
ACGTcount: A:0.08, C:0.10, G:0.04, T:0.78
Consensus pattern (23 bp):
TTTTTTATTATGTTTCTTTTTCC
Found at i:7924377 original size:21 final size:21
Alignment explanation
Indices: 7924349--7924439 Score: 81
Period size: 21 Copynumber: 4.7 Consensus size: 21
7924339 GTTACATAAG
7924349 TAATTATA-ATATATATTTGCA
1 TAATTATATATAT-TATTTGCA
*
7924370 TGATTATATATATTATTTGCA
1 TAATTATATATATTATTTGCA
*
7924391 TAATTA-AT-T-TT-TAT--A
1 TAATTATATATATTATTTGCA
7924406 T-ATTATATATATTATTTGCA
1 TAATTATATATATTATTTGCA
* *
7924426 TGATTATATTTATT
1 TAATTATATATATT
7924440 TCACATGATT
Statistics
Matches: 57, Mismatches: 5, Indels: 16
0.73 0.06 0.21
Matches are distributed among these distances:
14 4 0.07
15 4 0.07
16 1 0.02
17 4 0.07
18 4 0.07
19 1 0.02
20 4 0.07
21 31 0.54
22 4 0.07
ACGTcount: A:0.36, C:0.03, G:0.05, T:0.55
Consensus pattern (21 bp):
TAATTATATATATTATTTGCA
Found at i:7924446 original size:19 final size:19
Alignment explanation
Indices: 7924351--7924459 Score: 66
Period size: 19 Copynumber: 5.7 Consensus size: 19
7924341 TACATAAGTA
*
7924351 ATTATAATATATATTTGCATG
1 ATTAT-ATAT-TATTTACATG
* *
7924372 ATTATATATATTATTTGCATA
1 A-T-TATATATTATTTACATG
* *
7924393 ATTA-AT-TT-TTATATATT
1 ATTATATATTATT-TACATG
*
7924410 A-TATATATTATTTGCATG
1 ATTATATATTATTTACATG
7924428 ATTATAT-TTATTTCACATG
1 ATTATATATTATTT-ACATG
*
7924447 ATTATATGTTATT
1 ATTATATATTATT
7924460 GCATGAATGT
Statistics
Matches: 71, Mismatches: 8, Indels: 19
0.72 0.08 0.19
Matches are distributed among these distances:
16 4 0.06
17 8 0.11
18 14 0.20
19 20 0.28
20 6 0.08
21 11 0.15
22 5 0.07
23 3 0.04
ACGTcount: A:0.35, C:0.05, G:0.06, T:0.54
Consensus pattern (19 bp):
ATTATATATTATTTACATG
Found at i:7924546 original size:15 final size:15
Alignment explanation
Indices: 7924526--7924570 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
7924516 TGCATAATTA
*
7924526 TTGCATGATATTTTT
1 TTGCATGATATTTAT
*
7924541 TTGCATGATTATATAT
1 TTGCATGA-TATTTAT
*
7924557 TTACATGATATTTA
1 TTGCATGATATTTA
7924571 ATATTTGCAT
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
15 13 0.52
16 12 0.48
ACGTcount: A:0.29, C:0.07, G:0.11, T:0.53
Consensus pattern (15 bp):
TTGCATGATATTTAT
Found at i:7924565 original size:16 final size:16
Alignment explanation
Indices: 7924526--7924602 Score: 66
Period size: 16 Copynumber: 4.8 Consensus size: 16
7924516 TGCATAATTA
* *
7924526 TTGCATGA-TATTTTT
1 TTGCATGATTATATAT
7924541 TTGCATGATTATATAT
1 TTGCATGATTATATAT
* *
7924557 TTACATGATATTTAATAT
1 TTGCATGAT-TAT-ATAT
* *
7924575 TTGCATAATTATAAAT
1 TTGCATGATTATATAT
*
7924591 TGGCATGATTAT
1 TTGCATGATTAT
7924603 TTACTTATTG
Statistics
Matches: 49, Mismatches: 10, Indels: 5
0.77 0.16 0.08
Matches are distributed among these distances:
15 8 0.16
16 26 0.53
17 4 0.08
18 11 0.22
ACGTcount: A:0.32, C:0.06, G:0.12, T:0.49
Consensus pattern (16 bp):
TTGCATGATTATATAT
Found at i:7924586 original size:34 final size:32
Alignment explanation
Indices: 7924525--7924615 Score: 87
Period size: 34 Copynumber: 2.8 Consensus size: 32
7924515 TTGCATAATT
* *
7924525 ATTG-CATGATATTT-TTTTGCATGATTATAT
1 ATTGACATGATATTTATTTTGCATAATTATAA
*
7924555 ATTTACATGATATTTAATATTTGCATAATTATAA
1 ATTGACATGATATTT-AT-TTTGCATAATTATAA
*
7924589 ATTGGCATGATTATTTACTTATTGCAT
1 ATTGACATGA-TATTTA-TT-TTGCAT
7924616 GATGGCATGA
Statistics
Matches: 49, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
30 3 0.06
31 10 0.20
33 1 0.02
34 23 0.47
35 12 0.24
ACGTcount: A:0.32, C:0.08, G:0.11, T:0.49
Consensus pattern (32 bp):
ATTGACATGATATTTATTTTGCATAATTATAA
Found at i:7927526 original size:22 final size:21
Alignment explanation
Indices: 7927477--7927532 Score: 58
Period size: 22 Copynumber: 2.6 Consensus size: 21
7927467 ATACAAAACC
* * *
7927477 AAAAATGAAAGAAAAAACATG
1 AAAAAAGAAAGAAAAAAAAAG
7927498 AAGAAAAGAAAGAAAAATAAAAG
1 AA-AAAAGAAAGAAAAA-AAAAG
*
7927521 AAAAAAAAAAGA
1 AAAAAAGAAAGA
7927533 GAGAAAAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 2 0.07
22 22 0.76
23 5 0.17
ACGTcount: A:0.79, C:0.02, G:0.14, T:0.05
Consensus pattern (21 bp):
AAAAAAGAAAGAAAAAAAAAG
Found at i:7927547 original size:34 final size:33
Alignment explanation
Indices: 7927477--7927550 Score: 87
Period size: 34 Copynumber: 2.2 Consensus size: 33
7927467 ATACAAAACC
* * *
7927477 AAAAATGAAAGAAAAAACATGAAGAAAAGAAAG
1 AAAAATAAAAGAAAAAAAAAGAAGAAAAGAAAG
*
7927510 AAAAATAAAAGAAAAAAAAAAGAGAGAAAAG-ATG
1 AAAAATAAAAG-AAAAAAAAAGA-AGAAAAGAAAG
7927544 AAAAATA
1 AAAAATA
7927551 GAACTAAAAG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 10 0.29
34 18 0.51
35 7 0.20
ACGTcount: A:0.76, C:0.01, G:0.16, T:0.07
Consensus pattern (33 bp):
AAAAATAAAAGAAAAAAAAAGAAGAAAAGAAAG
Found at i:7928651 original size:23 final size:23
Alignment explanation
Indices: 7928609--7928653 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
7928599 TTACTTTTGC
*
7928609 ATTTCATGCATTACGGTCATTGT
1 ATTTCATGCATTACAGTCATTGT
* *
7928632 ATTTCATGCATTGCATTCATTG
1 ATTTCATGCATTACAGTCATTG
7928654 CATCCATTAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.22, C:0.18, G:0.16, T:0.44
Consensus pattern (23 bp):
ATTTCATGCATTACAGTCATTGT
Found at i:7929461 original size:6 final size:6
Alignment explanation
Indices: 7929452--7929501 Score: 64
Period size: 6 Copynumber: 8.3 Consensus size: 6
7929442 TTGGATTTGG
* * * *
7929452 TTAATT TTAATT TTAATA TTAATT TTAATT TTGATT TTGATT TTGATT
1 TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT TTAATT
7929500 TT
1 TT
7929502 TGTTTTATTT
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 41 1.00
ACGTcount: A:0.28, C:0.00, G:0.06, T:0.66
Consensus pattern (6 bp):
TTAATT
Found at i:7929583 original size:24 final size:22
Alignment explanation
Indices: 7929540--7929585 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 22
7929530 TAGGTCAAAG
*
7929540 TTAAAAAAAATTAAACAAAAAA
1 TTAAAAAAAATGAAACAAAAAA
*
7929562 TTAAAAAAATCATGAAAGAAAAAA
1 TTAAAAAAA--ATGAAACAAAAAA
7929586 ATGTGAGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 9 0.45
24 11 0.55
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.17
Consensus pattern (22 bp):
TTAAAAAAAATGAAACAAAAAA
Found at i:7930721 original size:20 final size:20
Alignment explanation
Indices: 7930696--7930826 Score: 85
Period size: 20 Copynumber: 6.6 Consensus size: 20
7930686 AGTAATTATA
*
7930696 ATTTATAGATTTGCATGATT
1 ATTTATATATTTGCATGATT
*
7930716 ATTTAT-TA-TTACATGATT
1 ATTTATATATTTGCATGATT
* *
7930734 ATATATATTATTTGCATAATT
1 ATTTATA-TATTTGCATGATT
* *
7930755 AATTTAT-TA-CTGCATGATA
1 -ATTTATATATTTGCATGATT
* *
7930774 ATATACATCATTTGCATGATT
1 ATTTATAT-ATTTGCATGATT
7930795 ATATT-TAT-TATTGCATGATT
1 AT-TTATATAT-TTGCATGATT
**
7930815 ATGAATATATTT
1 ATTTATATATTT
7930827 ATTTGTATGA
Statistics
Matches: 83, Mismatches: 17, Indels: 22
0.68 0.14 0.18
Matches are distributed among these distances:
18 18 0.22
19 10 0.12
20 28 0.34
21 21 0.25
22 6 0.07
ACGTcount: A:0.34, C:0.07, G:0.09, T:0.50
Consensus pattern (20 bp):
ATTTATATATTTGCATGATT
Found at i:7930771 original size:40 final size:40
Alignment explanation
Indices: 7930704--7930838 Score: 164
Period size: 40 Copynumber: 3.3 Consensus size: 40
7930694 TAATTTATAG
*
7930704 ATTTGCATGATT-ATTTATTATTACATGATTATATATATT
1 ATTTGCATGATTAATTTATTATTGCATGATTATATATATT
* * * * *
7930743 ATTTGCATAATTAATTTATTACTGCATGATAATATACATC
1 ATTTGCATGATTAATTTATTATTGCATGATTATATATATT
7930783 ATTTGCATGATTATATTTATTATTGCATGATTATGAATATATTT
1 ATTTGCATGATTA-ATTTATTATTGCATGATTAT--ATATA-TT
*
7930827 ATTTGTATGATT
1 ATTTGCATGATT
7930839 TATCAATATG
Statistics
Matches: 79, Mismatches: 12, Indels: 5
0.82 0.12 0.05
Matches are distributed among these distances:
39 11 0.14
40 34 0.43
41 18 0.23
43 4 0.05
44 12 0.15
ACGTcount: A:0.33, C:0.07, G:0.10, T:0.50
Consensus pattern (40 bp):
ATTTGCATGATTAATTTATTATTGCATGATTATATATATT
Found at i:7930847 original size:25 final size:26
Alignment explanation
Indices: 7930794--7930852 Score: 68
Period size: 25 Copynumber: 2.3 Consensus size: 26
7930784 TTTGCATGAT
*
7930794 TATATTTATTATTGCATGATTATGAA
1 TATATTTATTATTGCATGATTATCAA
*
7930820 TATATTTA-T-TTGTATGATTTATCAA
1 TATATTTATTATTGCATGA-TTATCAA
*
7930845 TATGTTTA
1 TATATTTA
7930853 CATGATTATA
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
24 7 0.24
25 14 0.48
26 8 0.28
ACGTcount: A:0.32, C:0.03, G:0.10, T:0.54
Consensus pattern (26 bp):
TATATTTATTATTGCATGATTATCAA
Found at i:7930866 original size:20 final size:21
Alignment explanation
Indices: 7930833--7930872 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
7930823 ATTTATTTGT
* *
7930833 ATGATTTATCAATATGTTTAC
1 ATGATTTATAAATATATTTAC
7930854 ATGA-TTATAAATATATTTA
1 ATGATTTATAAATATATTTA
7930873 TTTGTGCGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.40, C:0.05, G:0.07, T:0.47
Consensus pattern (21 bp):
ATGATTTATAAATATATTTAC
Found at i:7930947 original size:25 final size:25
Alignment explanation
Indices: 7930895--7930944 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
7930885 ATTTTATATA
*
7930895 ATTGCATGATTTTTCTGGCATGATT
1 ATTGCATGATTTTTCTGACATGATT
* *
7930920 ATTGCATGATATTTTTTTACATGAT
1 ATTGCATGAT-TTTTCTGACATGAT
7930945 ATTTATTATT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.24, C:0.10, G:0.16, T:0.50
Consensus pattern (25 bp):
ATTGCATGATTTTTCTGACATGATT
Found at i:7930971 original size:18 final size:18
Alignment explanation
Indices: 7930928--7930985 Score: 64
Period size: 18 Copynumber: 3.2 Consensus size: 18
7930918 TTATTGCATG
*
7930928 ATATTTTTTTACATGA-T
1 ATATTTATTTACATGATT
* **
7930945 ATTTATTATTTGTATGATT
1 ATAT-TTATTTACATGATT
7930964 ATATTTATTTACATGATT
1 ATATTTATTTACATGATT
7930982 ATAT
1 ATAT
7930986 ATTTGCGTGA
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
17 3 0.09
18 25 0.78
19 4 0.12
ACGTcount: A:0.31, C:0.03, G:0.07, T:0.59
Consensus pattern (18 bp):
ATATTTATTTACATGATT
Found at i:7931007 original size:18 final size:17
Alignment explanation
Indices: 7930939--7931018 Score: 63
Period size: 18 Copynumber: 4.6 Consensus size: 17
7930929 TATTTTTTTA
*
7930939 CATGATATTTATTATTTG
1 CATGAT-TTTAATATTTG
* * * *
7930957 TATGATTATATTTATTTA
1 CATGATTTTA-ATATTTG
*
7930975 CATGATTAT-ATATTTG
1 CATGATTTTAATATTTG
*
7930991 CGTGATATTTAATATTTG
1 CATGAT-TTTAATATTTG
7931009 CATGATTTTA
1 CATGATTTTA
7931019 TGTTGGCACG
Statistics
Matches: 50, Mismatches: 9, Indels: 7
0.76 0.14 0.11
Matches are distributed among these distances:
16 10 0.20
17 9 0.18
18 31 0.62
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.54
Consensus pattern (17 bp):
CATGATTTTAATATTTG
Found at i:7931482 original size:9 final size:9
Alignment explanation
Indices: 7931468--7931511 Score: 52
Period size: 9 Copynumber: 4.7 Consensus size: 9
7931458 ACTAAAATAT
7931468 TTTTTAAAA
1 TTTTTAAAA
7931477 TTTTTAAAAA
1 TTTTT-AAAA
*
7931487 ATTTTAAAA
1 TTTTTAAAA
*
7931496 TTTTAAAAA
1 TTTTTAAAA
7931505 TATTTTA
1 T-TTTTA
7931512 TATTAAAAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
9 17 0.59
10 12 0.41
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (9 bp):
TTTTTAAAA
Found at i:7931493 original size:19 final size:19
Alignment explanation
Indices: 7931469--7931511 Score: 70
Period size: 19 Copynumber: 2.3 Consensus size: 19
7931459 CTAAAATATT
7931469 TTTTAAAATTTTTAAAAA-A
1 TTTTAAAA-TTTTAAAAATA
7931488 TTTTAAAATTTTAAAAATA
1 TTTTAAAATTTTAAAAATA
7931507 TTTTA
1 TTTTA
7931512 TATTAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
18 9 0.39
19 14 0.61
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
TTTTAAAATTTTAAAAATA
Found at i:7931533 original size:16 final size:16
Alignment explanation
Indices: 7931478--7931534 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
7931468 TTTTTAAAAT
*
7931478 TTTTAAAAAATTTTAAAA
1 TTTTAAAAAA-ATT-AAA
* **
7931496 TTTTAAAAATATTTTA
1 TTTTAAAAAAATTAAA
*
7931512 TATTAAAAAAATTAAA
1 TTTTAAAAAAATTAAA
7931528 TTTTAAA
1 TTTTAAA
7931535 TTTCGTATGA
Statistics
Matches: 30, Mismatches: 9, Indels: 2
0.73 0.22 0.05
Matches are distributed among these distances:
16 19 0.63
17 2 0.07
18 9 0.30
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (16 bp):
TTTTAAAAAAATTAAA
Found at i:7931590 original size:31 final size:32
Alignment explanation
Indices: 7931521--7931597 Score: 95
Period size: 31 Copynumber: 2.5 Consensus size: 32
7931511 ATATTAAAAA
* * *
7931521 AATTAAATTTTAAATTTCGTATGAGTATAGGG
1 AATTAAATTTTAAATATCGTATAAGTACAGGG
*
7931553 AA-TAAATTTTAAATATCGTATAAGTACA-TG
1 AATTAAATTTTAAATATCGTATAAGTACAGGG
*
7931583 AATTAAATTTGAAAT
1 AATTAAATTTTAAAT
7931598 TTTAAGTGAA
Statistics
Matches: 39, Mismatches: 5, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
30 3 0.08
31 34 0.87
32 2 0.05
ACGTcount: A:0.44, C:0.04, G:0.13, T:0.39
Consensus pattern (32 bp):
AATTAAATTTTAAATATCGTATAAGTACAGGG
Found at i:7932016 original size:24 final size:23
Alignment explanation
Indices: 7931966--7932027 Score: 90
Period size: 23 Copynumber: 2.7 Consensus size: 23
7931956 TTAGTTATAG
* *
7931966 TATATAATTTTATTATAAAATAC
1 TATATATTTTTATTATAAAATAA
7931989 TATATATTTTTATTATAAAAATAA
1 TATATATTTTTATTAT-AAAATAA
7932013 TATATATTTTT-TTAT
1 TATATATTTTTATTAT
7932028 TAAGTATGTA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
23 19 0.53
24 17 0.47
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.55
Consensus pattern (23 bp):
TATATATTTTTATTATAAAATAA
Found at i:7941164 original size:17 final size:16
Alignment explanation
Indices: 7941142--7941173 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
7941132 AAGTCAACTT
7941142 AAAAAAGAAACAAAAAA
1 AAAAAAGAAA-AAAAAA
7941159 AAAAAAGAAAAAAAA
1 AAAAAAGAAAAAAAA
7941174 TACAAATATC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.91, C:0.03, G:0.06, T:0.00
Consensus pattern (16 bp):
AAAAAAGAAAAAAAAA
Found at i:7944785 original size:118 final size:118
Alignment explanation
Indices: 7944575--7944814 Score: 435
Period size: 118 Copynumber: 2.0 Consensus size: 118
7944565 ATTCTCCTCC
* *
7944575 ACCTAATCTCGTGACGCTCTAGTCATGGAGGCTAGCTACCTTGCCGACCTCCCTCGAGATGCTTG
1 ACCTAACCTCGTGACGCTCTAGTCATGGAGGCTAGCTACCCTGCCGACCTCCCTCGAGATGCTTG
* *
7944640 GCGTGGATTGAACGGTTTAGGGTTGGTTTTGATACCAACTGTCACGGGTTCTG
66 GCGTGGATTGAACGGTTTAGGGCTGGTTTTGATACCAACTGTCACGGGTTCCG
7944693 ACCTAACCTCGTGACGCTCTAGTCATGGAGGCTAGCTACCCTGCCGACCTCCCTCGAGATGCTTG
1 ACCTAACCTCGTGACGCTCTAGTCATGGAGGCTAGCTACCCTGCCGACCTCCCTCGAGATGCTTG
*
7944758 GTGTGGATTGAACGGTTTAGGGCTGGTTTTGATACCAACTGTCACGGGTTCCG
66 GCGTGGATTGAACGGTTTAGGGCTGGTTTTGATACCAACTGTCACGGGTTCCG
7944811 ACCT
1 ACCT
7944815 TAGACTCAGA
Statistics
Matches: 117, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
118 117 1.00
ACGTcount: A:0.18, C:0.26, G:0.28, T:0.28
Consensus pattern (118 bp):
ACCTAACCTCGTGACGCTCTAGTCATGGAGGCTAGCTACCCTGCCGACCTCCCTCGAGATGCTTG
GCGTGGATTGAACGGTTTAGGGCTGGTTTTGATACCAACTGTCACGGGTTCCG
Found at i:7944917 original size:100 final size:100
Alignment explanation
Indices: 7944744--7944928 Score: 248
Period size: 100 Copynumber: 1.9 Consensus size: 100
7944734 TGCCGACCTC
** * * ***
7944744 CCTCGAGATGCTTGGTGTGGATTGAACGGTTTAGGGCTGGTTTTGATACCAACTGTCACGGGTTC
1 CCTCGAGATGCTTGACGTGGATTGAACGGTTTAGGGCTGGCTCTGATACCAACTGTCACAACTTC
7944809 CGACCTTAGAC-TCAGAATCCATACCGCCTTAGGCT
66 CGACCTTAGACAT-AGAATCCATACCGCCTTAGGCT
* * *
7944844 CCTCGAGGTGCTTGACGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAACTT
1 CCTCGAGATGCTTGACGTGGATTGAACGGTTTAGGGCTGGCTCTGATACCAACTGTCAC-AACTT
7944909 -CGACCTTAGACATAGAATCC
65 CCGACCTTAGACATAGAATCC
7944929 TCGAGGTGCT
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
100 70 0.96
101 3 0.04
ACGTcount: A:0.22, C:0.23, G:0.26, T:0.29
Consensus pattern (100 bp):
CCTCGAGATGCTTGACGTGGATTGAACGGTTTAGGGCTGGCTCTGATACCAACTGTCACAACTTC
CGACCTTAGACATAGAATCCATACCGCCTTAGGCT
Found at i:7944982 original size:83 final size:83
Alignment explanation
Indices: 7944843--7945011 Score: 313
Period size: 83 Copynumber: 2.0 Consensus size: 83
7944833 CGCCTTAGGC
7944843 TCCTCGAGGTGCTTGACGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAACT
1 TCCTCGAGGTGCTTGACGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAACT
7944908 TCGACCTTAGACAT-AGAA
66 TCGACCTTAGAC-TCAGAA
*
7944926 TCCTCGAGGTGCTTGACGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAGCT
1 TCCTCGAGGTGCTTGACGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAACT
7944991 TCGACCTTAGACTCAGAA
66 TCGACCTTAGACTCAGAA
7945009 TCC
1 TCC
7945012 GTGCTGCCTT
Statistics
Matches: 84, Mismatches: 1, Indels: 2
0.97 0.01 0.02
Matches are distributed among these distances:
82 1 0.01
83 83 0.99
ACGTcount: A:0.24, C:0.22, G:0.25, T:0.29
Consensus pattern (83 bp):
TCCTCGAGGTGCTTGACGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAACT
TCGACCTTAGACTCAGAA
Found at i:7945630 original size:100 final size:100
Alignment explanation
Indices: 7945450--7945632 Score: 260
Period size: 100 Copynumber: 1.8 Consensus size: 100
7945440 TGTCTACTTC
* **
7945450 CCTCGAGGTGCTTGACGTGGATTGAACGGTTTAGGGCTGGCTCTGATATCAACTGTCACGTGTTC
1 CCTCGAGGTGCTTGACGTGGATTGAACGGTTTAGGACTGGCTCTGATATCAACTGTCACAAGTTC
* *
7945515 CGACCTTAGATTCAGAATTCATGCTGTCTTAGGCT
66 CGACCTTAAACTCAGAATTCATGCTGTCTTAGGCT
* * * *
7945550 CCTCGAGTTGCTTGGCGTGGATTGAACGGTTTAGGATTGGCTCTTATATCAACTGTCACAAGCTT
1 CCTCGAGGTGCTTGACGTGGATTGAACGGTTTAGGACTGGCTCTGATATCAACTGTCACAAG-TT
*
7945615 -TGACCTTAAACTCAGAAT
65 CCGACCTTAAACTCAGAAT
7945633 CCGTGCCGCC
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
100 70 0.97
101 2 0.03
ACGTcount: A:0.21, C:0.21, G:0.25, T:0.32
Consensus pattern (100 bp):
CCTCGAGGTGCTTGACGTGGATTGAACGGTTTAGGACTGGCTCTGATATCAACTGTCACAAGTTC
CGACCTTAAACTCAGAATTCATGCTGTCTTAGGCT
Found at i:7945647 original size:15 final size:15
Alignment explanation
Indices: 7945627--7945657 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
7945617 ACCTTAAACT
7945627 CAGAATCCGTGCCGC
1 CAGAATCCGTGCCGC
*
7945642 CAGAATTCGTGCCGC
1 CAGAATCCGTGCCGC
7945657 C
1 C
7945658 TTAGGCTTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.39, G:0.26, T:0.16
Consensus pattern (15 bp):
CAGAATCCGTGCCGC
Found at i:7946263 original size:100 final size:100
Alignment explanation
Indices: 7946090--7946271 Score: 256
Period size: 100 Copynumber: 1.8 Consensus size: 100
7946080 TCTACTTTTC
* * ** *
7946090 TCGAGGTGCTTGGCGTGGATTGAACGATTTAGGGCTAGCTCTGATACCAATTGTCACGGGTTTCG
1 TCGAGGTGCTTGACGTGGATTGAACGATTTAGGGCTAGCTCTGATACCAACTGTCACAAGCTTCG
7946155 ACCTTAGACTCAGAATCCATGTCGCCTTAGGCTCT
66 ACCTTAGACTCAGAATCCATGTCGCCTTAGGCTCT
* * * * * *
7946190 TCGAGTTGCTTGATGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAGCTTCG
1 TCGAGGTGCTTGACGTGGATTGAACGATTTAGGGCTAGCTCTGATACCAACTGTCACAAGCTTCG
*
7946255 ACTTTAGACTCAGAATC
66 ACCTTAGACTCAGAATC
7946272 TGTGCTGCCT
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
100 70 1.00
ACGTcount: A:0.21, C:0.21, G:0.26, T:0.31
Consensus pattern (100 bp):
TCGAGGTGCTTGACGTGGATTGAACGATTTAGGGCTAGCTCTGATACCAACTGTCACAAGCTTCG
ACCTTAGACTCAGAATCCATGTCGCCTTAGGCTCT
Found at i:7946609 original size:623 final size:621
Alignment explanation
Indices: 7944926--7946761 Score: 2755
Period size: 638 Copynumber: 2.9 Consensus size: 621
7944916 AGACATAGAA
*
7944926 TCCTCGAGGTGCTTGACGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAGCT
1 TCCTCGAGTTGCTTGACGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAGCT
* * *
7944991 TCGACCTTAGACTCAGAATCCGTGCTGCCTTAGGCTTAGAATCACCTCCTTCTAGGCTAAGTCAA
66 TCGACTTTAGACTCAGAATCTGTGCTGCCTTAGGCTTAGAATCACCTCCTTCTAGGCTAAGTCAG
* *
7945056 CTTAAAACACTAGCGTGTGCGCAAGTTAGAGAGAAACAGAAGAACAAGAGAATTGTTGAAAATGT
131 CTTAAAACACTAGCGTGTGCGCAAGTTAGAGAGAAACAGAAGAACAGGAGAATTGTTGGAAATGT
* *
7945121 GCTTAGTATTACTGAAACAGAAGTGTATGATGATGTACCTTGTCACGTGTCGAGATTTAAATTTC
196 GCTTAGTATTACTGAAACAGAAGTGTATGATGATGTACCTTGTCACGTGTCGAGACTTAAACTTC
**
7945186 GACCCGTGCGACTCTAGGACCCGGGCATCCACTCATCCGGTGTCTTAGATCAGCCTACCTTTTCA
261 GACCCGTGCGACTCTAGGACCCGGGCATCCACTCATCCGACGTCTTAGATCAGCCTA-CTTTTCA
* *
7945251 CTCTGATT-CTCCTGGCCTCACGGTTTTGTTCTACAAAAGGTGCCTCACAAGGAAGAGATGATGT
325 CTCTGGTTCCT-CTGGCCTCACGGTTTTGTTCTACAAAAGGTGCCTCACAAGGAAGAGATGGTGT
* *
7945315 GAATCTTTTTATACTCCAGTGACCCTCTTATTATGTTCGATGTGAGATTTAAGACTCCTCCTTAG
389 GAATCTTTTTATACTCCAGTGACCCTCCTATTATGTTCGATGTGAGATTTAAGACTCCTTCTTAG
* *
7945380 GTCAGTGACATTCTTCCTTACCCAACCTCGTGACGTTCTAGTCACGGAAGTTGGTCACCTTGTCT
454 GTCAGTGACATTCTCCCTTACCCAACCTCGTGACGTTCTAGTCACGGAGGTTGGTCACCTTGTCT
* *
7945445 ACTTCCCTCGAGGTGCTTGACGTGGATTGAACGGTTTAGGGCTGGCTCTGATATCAACTGTCACG
519 ACTTCCCTCGAGGTGCTTGGCGTGGATTGAACGGTTTAGGGCT-GCTCTGATACCAACTGTCACG
* * * *
7945510 TGTTCCGACCTTAGATTCAGAATTCATGCTGTCTTAGGC
583 GGTTCCGACCTTAGACTCAGAATCCATGCTGCCTTAGGC
* * *
7945549 TCCTCGAGTTGCTTGGCGTGGATTGAACGGTTTAGGATTGGCTCTTATATCAACTGTCACAAGCT
1 TCCTCGAGTTGCTTGACGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAGCT
* *
7945614 TTGACCTTAAACTCAGAATCCGTGCCGCCAGAAT-TCGTGCCGCCTTAGGCTTAGAATCACCTCC
66 TCGA-CTT----T-AG-A--C-T-----CAGAATCT-GTGCTGCCTTAGGCTTAGAATCACCTCC
* *
7945678 TTCTAGGCTAAGTCAGCTTAAAACACTAGCGTGTGCGCAAGTTAGAAAGAAACAGAAGAACAGAA
115 TTCTAGGCTAAGTCAGCTTAAAACACTAGCGTGTGCGCAAGTTAGAGAGAAACAGAAGAACAGGA
*
7945743 GAATTGTTGGAAATGTGCTTAGTATTACTGAAATAGAAGTGTATGATGATGTACCTTGTCACGTG
180 GAATTGTTGGAAATGTGCTTAGTATTACTGAAACAGAAGTGTATGATGATGTACCTTGTCACGTG
* *
7945808 TCGAGACTTAAACTTCGACCCGTGCGACTCTAGGACCCGGACATCCATTCATCCGACGTCTTAGA
245 TCGAGACTTAAACTTCGACCCGTGCGACTCTAGGACCCGGGCATCCACTCATCCGACGTCTTAGA
*
7945873 TCAGCCTATTTTTTCACTCTGGTTCCTCTGGCCTCACGGTTTTGTTCTACAAAAGGTGCCTCACA
310 TCAGCCTA-CTTTTCACTCTGGTTCCTCTGGCCTCACGGTTTTGTTCTACAAAAGGTGCCTCACA
* * *
7945938 AGGAAGAGATGGTGTGAATCTTTTTATACTTCAATGACCCTTCTATTATGTTCGATGTGAGATTT
374 AGGAAGAGATGGTGTGAATCTTTTTATACTCCAGTGACCCTCCTATTATGTTCGATGTGAGATTT
* * *
7946003 AGGACTCCTTCTTAGGTCAGTGACATTCTCCCTTACCCAATCTCGTGACGTTCTAATCACGGAGG
439 AAGACTCCTTCTTAGGTCAGTGACATTCTCCCTTACCCAACCTCGTGACGTTCTAGTCACGGAGG
** *
7946068 TTGGTCACCTTGTCTACTTTTCTCGAGGTGCTTGGCGTGGATTGAACGATTTAGGGCTAGCTCTG
504 TTGGTCACCTTGTCTACTTCCCTCGAGGTGCTTGGCGTGGATTGAACGGTTTAGGGCT-GCTCTG
* *
7946133 ATACCAATTGTCACGGGTTTCGACCTTAGACTCAGAATCCATG-TCGCCTTAGGC
568 ATACCAACTGTCACGGGTTCCGACCTTAGACTCAGAATCCATGCT-GCCTTAGGC
* *
7946187 TCTTCGAGTTGCTTGATGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAGCT
1 TCCTCGAGTTGCTTGACGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAGCT
* *
7946252 TCGACTTTAGACTCAGAATCTGTGCTGCCTCAAGCTTAGAATCACCTCCTTCTAGGCTAAGTCAG
66 TCGACTTTAGACTCAGAATCTGTGCTGCCTTAGGCTTAGAATCACCTCCTTCTAGGCTAAGTCAG
* * *
7946317 CTTAAAACACTAGCGTATGCGCAAGTTAGAGAGAAACAAAAGAACAGGAGAATTGCTGGAAATGT
131 CTTAAAACACTAGCGTGTGCGCAAGTTAGAGAGAAACAGAAGAACAGGAGAATTGTTGGAAATGT
*
7946382 GCTTAGTATTACTGAAACAGAAGTGTATGATGATGTACCTTATCACGTGTCGAGACTTAAACTTC
196 GCTTAGTATTACTGAAACAGAAGTGTATGATGATGTACCTTGTCACGTGTCGAGACTTAAACTTC
* * * * ** * *
7946447 GATCCGTACG-GTTTCAGGAGTCGGGCATCCACTCATTCGACGTCTTAGATCAGTCTACTTTTCC
261 GACCCGTGCGACTCT-AGGACCCGGGCATCCACTCATCCGACGTCTTAGATCAGCCTACTTTT-C
* * *
7946511 ACTCTGGTTCCTTTGGCCTCACGATTTTGTTCTACAAAAGGTGCCTCACAAGAAAGAGATGGTGT
324 ACTCTGGTTCCTCTGGCCTCACGGTTTTGTTCTACAAAAGGTGCCTCACAAGGAAGAGATGGTGT
*
7946576 GAATCATTTTATACTCCAGTGACCCTCCTATTATGTTCGATGTGAGATTTAAGACT-CTTCTTTA
389 GAATCTTTTTATACTCCAGTGACCCTCCTATTATGTTCGATGTGAGATTTAAGACTCCTTC-TTA
* *
7946640 GGTCAGTGACATTCTCCCTTACCCAACCTCGTGACGTTCTAGTCACGAAGGTTGGTCACCTTGTT
453 GGTCAGTGACATTCTCCCTTACCCAACCTCGTGACGTTCTAGTCACGGAGGTTGGTCACCTTGTC
* * * ** *
7946705 TACCTCCCTCGAGGTGTTTGGCATGGATCAAACGGTTTAGGGCTGACTCTAATACCA
518 TACTTCCCTCGAGGTGCTTGGCGTGGATTGAACGGTTTAGGGCTG-CTCTGATACCA
7946762 CTTGACCCTC
Statistics
Matches: 1096, Mismatches: 94, Indels: 46
0.89 0.08 0.04
Matches are distributed among these distances:
622 11 0.01
623 502 0.46
624 3 0.00
628 2 0.00
629 3 0.00
630 1 0.00
631 1 0.00
632 3 0.00
633 2 0.00
637 4 0.00
638 562 0.51
639 2 0.00
ACGTcount: A:0.25, C:0.23, G:0.22, T:0.31
Consensus pattern (621 bp):
TCCTCGAGTTGCTTGACGTGGATTGAACGGTTTAGGGTTGGCTCTGATATCAACTGTCACAAGCT
TCGACTTTAGACTCAGAATCTGTGCTGCCTTAGGCTTAGAATCACCTCCTTCTAGGCTAAGTCAG
CTTAAAACACTAGCGTGTGCGCAAGTTAGAGAGAAACAGAAGAACAGGAGAATTGTTGGAAATGT
GCTTAGTATTACTGAAACAGAAGTGTATGATGATGTACCTTGTCACGTGTCGAGACTTAAACTTC
GACCCGTGCGACTCTAGGACCCGGGCATCCACTCATCCGACGTCTTAGATCAGCCTACTTTTCAC
TCTGGTTCCTCTGGCCTCACGGTTTTGTTCTACAAAAGGTGCCTCACAAGGAAGAGATGGTGTGA
ATCTTTTTATACTCCAGTGACCCTCCTATTATGTTCGATGTGAGATTTAAGACTCCTTCTTAGGT
CAGTGACATTCTCCCTTACCCAACCTCGTGACGTTCTAGTCACGGAGGTTGGTCACCTTGTCTAC
TTCCCTCGAGGTGCTTGGCGTGGATTGAACGGTTTAGGGCTGCTCTGATACCAACTGTCACGGGT
TCCGACCTTAGACTCAGAATCCATGCTGCCTTAGGC
Found at i:7956977 original size:2 final size:2
Alignment explanation
Indices: 7956972--7957010 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
7956962 ATATATACGA
* *
7956972 AT AT AT AT AT AT AT AT AT AT AT AT AT AC AC AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
7957011 GAATCTTCTG
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.05, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:7957063 original size:13 final size:13
Alignment explanation
Indices: 7957045--7957069 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
7957035 CCATTTATAC
7957045 AAAAAGATAAAAG
1 AAAAAGATAAAAG
7957058 AAAAAGATAAAA
1 AAAAAGATAAAA
7957070 AGGTAAAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.12, T:0.08
Consensus pattern (13 bp):
AAAAAGATAAAAG
Found at i:7965473 original size:21 final size:20
Alignment explanation
Indices: 7965435--7965476 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 20
7965425 TAAAAAAATT
7965435 ATTTTTTAATTAATTATTTA
1 ATTTTTTAATTAATTATTTA
7965455 ATTTTTT-ATTATATATATTTA
1 ATTTTTTAATTA-AT-TATTTA
7965476 A
1 A
7965477 ATAATGATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
19 4 0.20
20 9 0.45
21 7 0.35
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTTTTAATTAATTATTTA
Found at i:7965486 original size:16 final size:15
Alignment explanation
Indices: 7965465--7965518 Score: 58
Period size: 14 Copynumber: 3.7 Consensus size: 15
7965455 ATTTTTTATT
7965465 ATATATATTTAAATA
1 ATATATATTTAAATA
*
7965480 ATGATATTTTTAAAT-
1 AT-ATATATTTAAATA
* *
7965495 ATTTATATTTAAAAA
1 ATATATATTTAAATA
7965510 ATA-ATATTT
1 ATATATATTT
7965519 TATATTTTAA
Statistics
Matches: 32, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
14 15 0.47
15 6 0.19
16 11 0.34
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (15 bp):
ATATATATTTAAATA
Found at i:7965489 original size:30 final size:30
Alignment explanation
Indices: 7965455--7965524 Score: 86
Period size: 30 Copynumber: 2.3 Consensus size: 30
7965445 TAATTATTTA
* *
7965455 ATTTTTTATTATATATATTTAAATAATGAT
1 ATTTTTTATTATATATATTTAAAAAATAAT
* * *
7965485 ATTTTTAAATATTTATATTTAAAAAATAAT
1 ATTTTTTATTATATATATTTAAAAAATAAT
*
7965515 ATTTTATATT
1 ATTTTTTATT
7965525 TTAAAAAATA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.43, C:0.00, G:0.01, T:0.56
Consensus pattern (30 bp):
ATTTTTTATTATATATATTTAAAAAATAAT
Found at i:7965522 original size:21 final size:22
Alignment explanation
Indices: 7965492--7965543 Score: 90
Period size: 22 Copynumber: 2.5 Consensus size: 22
7965482 GATATTTTTA
7965492 AATA-TTTATA-TTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
7965512 AATATTTTATATTTTAAAAAAT
1 AATATTTTATATTTTAAAAAAT
7965534 AATATTTTAT
1 AATATTTTAT
7965544 TAATTTTAGG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 4 0.13
21 6 0.20
22 20 0.67
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (22 bp):
AATATTTTATATTTTAAAAAAT
Found at i:7972561 original size:24 final size:24
Alignment explanation
Indices: 7972533--7972588 Score: 112
Period size: 24 Copynumber: 2.3 Consensus size: 24
7972523 GTTAGAAATT
7972533 ATATAAAAAAATTAGTATCATTTG
1 ATATAAAAAAATTAGTATCATTTG
7972557 ATATAAAAAAATTAGTATCATTTG
1 ATATAAAAAAATTAGTATCATTTG
7972581 ATATAAAA
1 ATATAAAA
7972589 TATATTAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 32 1.00
ACGTcount: A:0.54, C:0.04, G:0.07, T:0.36
Consensus pattern (24 bp):
ATATAAAAAAATTAGTATCATTTG
Found at i:7972986 original size:218 final size:212
Alignment explanation
Indices: 7972680--7973345 Score: 586
Period size: 217 Copynumber: 3.0 Consensus size: 212
7972670 ATTGCAATGT
* * * *
7972680 AAATAATTAAGTTGATAATGTAAAAAAATTATTACCTTAATTTCAAAGAATAATTTTAAACCAAT
1 AAATAATTAAGTTGGTAATGTAAAAAAATTATTA-C--AA-AT-AAAAAATAATTTTAAA-CAAA
* * *
7972745 AAATAAGTATTAATGTAAAAAAATGAGAATAATTATAAAATTGATGTCATTTAACATAAAATGAG
60 AAATAAATATTAATGTAAAAAAATAAAAATAATTATAAAATTGAT-T-ATTTAACATAAAATG-G
** * *
7972810 TTTGAAGTATCGTAATAT-TATAACAAAA-AGTTGTGATAATTATAAATATTATGAGAAAGTAAC
122 TTACAAGTATCGTAATATCT-TAACAAAATA-TTGTGATAATTATAAATATAAT-AAAAAGTAAC
* * *
7972873 AACAGACATAAAAAGATATTGTTATAACAA
184 AACAAACATAAAAA-ATATTATTAAAACAA
*
7972903 AAATAATTAAGTTGGTAATGTAAAAAAATGATTACAAATAAAAAATAATTTTAAATCAAAAAATA
1 AAATAATTAAGTTGGTAATGTAAAAAAATTATTACAAATAAAAAATAATTTTAAA-CAAAAAATA
* * * *
7972968 AAAATTAATGTAAAAAAATAAAAATAACTGTAAAATTAGTATTATTTAACGTAAAATGGTTACAA
65 AATATTAATGTAAAAAAATAAAAATAATTATAAAATT-G-ATTATTTAACATAAAATGGTTACAA
* * * * * * **
7973033 GTATCTTTATATCTTAATAAAATATTGTGATAATTTTAAATGTAATAAAAAGTAATAACAAATGT
128 GTATCGTAATATCTTAACAAAATATTGTGATAATTATAAATATAATAAAAAGTAACAACAAACAT
***
7973098 AAAAAATATTATTAAAATGT
193 AAAAAATATTATTAAAACAA
** * * * *
7973118 AAATAAAAAAATTGGTAATATAAAAAATTATTATTACAAATAAAAAATAATCTTACACTAAAAAA
1 AAATAATTAAGTTGGTAATGTAAAAAA--ATTATTACAAATAAAAAATAATTTTAAAC-AAAAAA
* * * * ** * *
7973183 TAGATATTAATGTAAAAAGATAAAAATAATTATAAAATTGATAATTTTTTATGTAAAATGATTAG
63 TAAATATTAATGTAAAAAAATAAAAATAATTATAAAATTGAT--TATTTAACATAAAATGGTTAC
* * * * * * *
7973248 AAGTGTAGTAATCTCTTTAAGAAAATATTAAT-ATAATCT-TAAACATAATAAAAA-TAACAATA
126 AAGTATCGTAATATC-TTAACAAAATATT-GTGATAAT-TATAAATATAATAAAAAGTAACAACA
* * *
7973310 AATATAAAAAGATATTATTATAACAT
188 AACATAAAAA-ATATTATTAAAACAA
7973336 AAATAATTAA
1 AAATAATTAA
7973346 ATTAACAACA
Statistics
Matches: 365, Mismatches: 65, Indels: 31
0.79 0.14 0.07
Matches are distributed among these distances:
215 35 0.10
216 21 0.06
217 147 0.40
218 120 0.33
219 5 0.01
220 4 0.01
222 1 0.00
223 32 0.09
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.33
Consensus pattern (212 bp):
AAATAATTAAGTTGGTAATGTAAAAAAATTATTACAAATAAAAAATAATTTTAAACAAAAAATAA
ATATTAATGTAAAAAAATAAAAATAATTATAAAATTGATTATTTAACATAAAATGGTTACAAGTA
TCGTAATATCTTAACAAAATATTGTGATAATTATAAATATAATAAAAAGTAACAACAAACATAAA
AAATATTATTAAAACAA
Found at i:7973002 original size:19 final size:20
Alignment explanation
Indices: 7972960--7973002 Score: 70
Period size: 20 Copynumber: 2.1 Consensus size: 20
7972950 ATTTTAAATC
7972960 AAAAAATAAAAATTAATGTA
1 AAAAAATAAAAATTAATGTA
7972980 AAAAAATAAAAA-TAACTGTA
1 AAAAAATAAAAATTAA-TGTA
7973000 AAA
1 AAA
7973003 TTAGTATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 3 0.14
20 19 0.86
ACGTcount: A:0.72, C:0.02, G:0.05, T:0.21
Consensus pattern (20 bp):
AAAAAATAAAAATTAATGTA
Found at i:7973173 original size:19 final size:18
Alignment explanation
Indices: 7973137--7973191 Score: 56
Period size: 19 Copynumber: 2.9 Consensus size: 18
7973127 AATTGGTAAT
*
7973137 ATAAAAAATTATTATTACAA
1 ATAAAAAA-TAATATTAC-A
*
7973157 ATAAAAAATAATCTTACA
1 ATAAAAAATAATATTACA
*
7973175 CTAAAAAATAGATATTA
1 ATAAAAAATA-ATATTA
7973192 ATGTAAAAAG
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
18 10 0.33
19 12 0.40
20 8 0.27
ACGTcount: A:0.60, C:0.07, G:0.02, T:0.31
Consensus pattern (18 bp):
ATAAAAAATAATATTACA
Found at i:7973385 original size:218 final size:218
Alignment explanation
Indices: 7972728--7973386 Score: 572
Period size: 218 Copynumber: 3.0 Consensus size: 218
7972718 AATTTCAAAG
* * * ** * * *
7972728 AATAATTTTAAACCAATAAATAAGTATTAATGTAAAAAAATGAGAATAATTATAAAATT-G-ATG
1 AATAATCTTAAATCAAAAAATAAAAATTAATGTAAAAAAATAAAAATAACTATAAAATTAGTAT-
* ** * * *
7972791 TCATTTAACATAAAATGAGTTTGAAGTATCGTAATAT-TATAACAAAA-AGTTGTGATAAT-TAT
65 T-ATTTAACGTAAAATGA-TTACAAGTATAGTAATATCT-TAAGAAAATA-TTATGATAATCT-T
* * * * * * * *
7972853 AAATATTATGAGAAAGTAACAACAGACATAAAAAGATATTGTTATAACAAAAATAATTAAGTTGG
125 AAACATAAT-AAAAAGTAACAACAAATATAAAAAGATATTATTATAACATAAATAATTAAATTGG
* *
7972918 TAATGTAAAAAAATG--ATTACAAATAAAA
189 TAATATAAAAAATTGTTATTACAAATAAAA
* *
7972946 AATAATTTTAAATCAAAAAATAAAAATTAATGTAAAAAAATAAAAATAACTGTAAAATTAGTATT
1 AATAATCTTAAATCAAAAAATAAAAATTAATGTAAAAAAATAAAAATAACTATAAAATTAGTATT
* ** * * * * **
7973011 ATTTAACGTAAAATGGTTACAAGTATCTTTATATCTTAATAAAATATTGTGATAATTTTAAATGT
66 ATTTAACGTAAAATGATTACAAGTATAGTAATATCTTAAGAAAATATTATGATAATCTTAAACAT
* * * ** **
7973076 AATAAAAAGTAATAACAAATGTAAAAA-ATATTATTAAAATGTAAATAAAAAAATTGGTAATATA
131 AATAAAAAGTAACAACAAATATAAAAAGATATTATTATAACATAAATAATTAAATTGGTAATATA
*
7973140 AAAAATTATTATTACAAATAAAA
196 AAAAATTGTTATTACAAATAAAA
* * * * *
7973163 AATAATCTTACA-CTAAAAAATAGATATTAATGTAAAAAGATAAAAATAATTATAAAATT-GATA
1 AATAATCTTAAATC-AAAAAATAAAAATTAATGTAAAAAAATAAAAATAACTATAAAATTAG-T-
* * * * *
7973226 ATT-TTTTATGTAAAATGATTAGAAGTGTAGTAATCTCTTTAAGAAAATATTAAT-ATAATCTTA
63 ATTATTTAACGTAAAATGATTACAAGTATAGTAATATC-TTAAGAAAATATT-ATGATAATCTTA
* ***
7973289 AACATAATAAAAA-TAACAATAAATATAAAAAGATATTATTATAACATAAATAATTAAATTAACA
126 AACATAATAAAAAGTAACAACAAATATAAAAAGATATTATTATAACATAAATAATTAAATTGGTA
* *
7973353 ACATAAAAAATTTGTTATTATAAAT-AAA
191 ATATAAAAAA-TTGTTATTACAAATAAAA
7973381 AATAAT
1 AATAAT
7973387 TCTAAATTAA
Statistics
Matches: 359, Mismatches: 68, Indels: 28
0.79 0.15 0.06
Matches are distributed among these distances:
215 34 0.09
216 21 0.06
217 143 0.40
218 144 0.40
219 15 0.04
220 2 0.01
ACGTcount: A:0.55, C:0.05, G:0.08, T:0.33
Consensus pattern (218 bp):
AATAATCTTAAATCAAAAAATAAAAATTAATGTAAAAAAATAAAAATAACTATAAAATTAGTATT
ATTTAACGTAAAATGATTACAAGTATAGTAATATCTTAAGAAAATATTATGATAATCTTAAACAT
AATAAAAAGTAACAACAAATATAAAAAGATATTATTATAACATAAATAATTAAATTGGTAATATA
AAAAATTGTTATTACAAATAAAA
Found at i:7974054 original size:18 final size:18
Alignment explanation
Indices: 7974031--7974067 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
7974021 GGTAATTAAT
* *
7974031 TAAATTGATTTTGTAAAA
1 TAAATTGATATTATAAAA
7974049 TAAATTGATATTATAAAA
1 TAAATTGATATTATAAAA
7974067 T
1 T
7974068 TAAAAAAGAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.43
Consensus pattern (18 bp):
TAAATTGATATTATAAAA
Found at i:7974563 original size:12 final size:11
Alignment explanation
Indices: 7974510--7974568 Score: 68
Period size: 11 Copynumber: 5.4 Consensus size: 11
7974500 AAATAATTAT
7974510 TATATATATAAA
1 TATATATA-AAA
*
7974522 TCTAT-TAAAA
1 TATATATAAAA
*
7974532 TATATTTAAAA
1 TATATATAAAA
7974543 TAT-TATAAAA
1 TATATATAAAA
7974553 TAATATATAAAA
1 T-ATATATAAAA
7974565 TATA
1 TATA
7974569 AAAAAATAAA
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
10 14 0.34
11 15 0.37
12 12 0.29
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.41
Consensus pattern (11 bp):
TATATATAAAA
Found at i:7974563 original size:22 final size:22
Alignment explanation
Indices: 7974511--7974577 Score: 73
Period size: 22 Copynumber: 3.0 Consensus size: 22
7974501 AATAATTATT
* *
7974511 ATATATATAAATCTATTAAAAT-
1 ATATATA-AAATATAATAAAATA
* *
7974533 ATATTTAAAATATTATAAAATA
1 ATATATAAAATATAATAAAATA
*
7974555 ATATATAAAATATAAAAAAATA
1 ATATATAAAATATAATAAAATA
7974577 A
1 A
7974578 ATTTTAAAAC
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
21 11 0.30
22 26 0.70
ACGTcount: A:0.63, C:0.01, G:0.00, T:0.36
Consensus pattern (22 bp):
ATATATAAAATATAATAAAATA
Found at i:7974585 original size:22 final size:22
Alignment explanation
Indices: 7974528--7974586 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
7974518 TAAATCTATT
* * *
7974528 AAAATATA-TTTAAAATATTAT
1 AAAATAAATTTTAAAATATAAA
*
7974549 AAAAT-AATATATAAAATATAAA
1 AAAATAAAT-TTTAAAATATAAA
7974571 AAAATAAATTTTAAAA
1 AAAATAAATTTTAAAA
7974587 CAAATTAATC
Statistics
Matches: 30, Mismatches: 5, Indels: 5
0.75 0.12 0.12
Matches are distributed among these distances:
20 1 0.03
21 5 0.17
22 21 0.70
23 3 0.10
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
AAAATAAATTTTAAAATATAAA
Found at i:7981205 original size:11 final size:11
Alignment explanation
Indices: 7981178--7981220 Score: 52
Period size: 12 Copynumber: 3.9 Consensus size: 11
7981168 ACAACTCGAC
*
7981178 GGAAAATAAAA
1 GGAAAAGAAAA
7981189 -GAAAAGAAAA
1 GGAAAAGAAAA
7981199 GGAAAAGAAAAA
1 GGAAAAG-AAAA
*
7981211 GAAAAAGAAA
1 GGAAAAGAAA
7981221 GGGAGAGAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
10 9 0.32
11 9 0.32
12 10 0.36
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (11 bp):
GGAAAAGAAAA
Found at i:7984850 original size:26 final size:26
Alignment explanation
Indices: 7984820--7984874 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
7984810 AAATAATAAT
7984820 AAAAATTATTATAATTACAATTAAAA
1 AAAAATTATTATAATTACAATTAAAA
* **
7984846 AAAAATTATTGTAATTATGATTAAAA
1 AAAAATTATTATAATTACAATTAAAA
7984872 AAA
1 AAA
7984875 TTTAATGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (26 bp):
AAAAATTATTATAATTACAATTAAAA
Found at i:7986126 original size:21 final size:21
Alignment explanation
Indices: 7986083--7986126 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
7986073 CGTTTTGATT
*
7986083 TTTTTTAAAATTTTATTATAA
1 TTTTTTAAAATTTTATTAAAA
*
7986104 TTTTTTAAACTGTTT-TTAAAA
1 TTTTTTAAAAT-TTTATTAAAA
7986125 TT
1 TT
7986127 AATTAAATTG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 17 0.85
22 3 0.15
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.61
Consensus pattern (21 bp):
TTTTTTAAAATTTTATTAAAA
Found at i:7986687 original size:33 final size:34
Alignment explanation
Indices: 7986616--7986736 Score: 136
Period size: 34 Copynumber: 3.6 Consensus size: 34
7986606 CAAACGCTAC
** * ** * *
7986616 TATATTAGCGGTGTTTGAATCTAGAAAACGCAAC
1 TATATTAGCGGCATTTGTATCTAGAAAATACCAT
**
7986650 TATATTAGCGGCATTTGTATCT-GAAAATGTCAT
1 TATATTAGCGGCATTTGTATCTAGAAAATACCAT
*
7986683 TATATTAGCGGCATTTGTATCTAGAAAATACCGT
1 TATATTAGCGGCATTTGTATCTAGAAAATACCAT
*
7986717 TATTTTAGCGGCATTTGTAT
1 TATATTAGCGGCATTTGTAT
7986737 ATTTGAGATG
Statistics
Matches: 75, Mismatches: 11, Indels: 2
0.85 0.12 0.02
Matches are distributed among these distances:
33 29 0.39
34 46 0.61
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (34 bp):
TATATTAGCGGCATTTGTATCTAGAAAATACCAT
Found at i:7992376 original size:124 final size:124
Alignment explanation
Indices: 7992156--7992406 Score: 360
Period size: 124 Copynumber: 2.0 Consensus size: 124
7992146 AATTATTATC
* * *
7992156 TAACTATCGATGATGTCCCATATAATAGAACTTTCTACCATTAGGTAACCAATTCAAACATGTCT
1 TAACTATCGATAATGTCCCATATAACAGAACTTTCTACCATTAGATAACCAATTCAAACATGTCT
* * * *
7992221 GTATAGCACAACATAGACAAACATAATGACCTTTTGTACTTTAACTATATAGATTCGTA
66 GTACAGCACAACATAGACAAACATAACGACCTTTTGTACTCTAACTATATAAATTCGTA
* ** *
7992280 TAACTATCGATAATGTCTCATATAACAGAAC-TTCTTACCATTAGATAATTAATTCGAACATGTC
1 TAACTATCGATAATGTCCCATATAACAGAACTTTC-TACCATTAGATAACCAATTCAAACATGTC
* **
7992344 TGTACAGCACAACATAGATAAGTATAACGACCTTTTGTACTCTAACTATATAAATTCGTA
65 TGTACAGCACAACATAGACAAACATAACGACCTTTTGTACTCTAACTATATAAATTCGTA
7992404 TAA
1 TAA
7992407 GTAAAAAAAT
Statistics
Matches: 112, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
123 3 0.03
124 109 0.97
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.33
Consensus pattern (124 bp):
TAACTATCGATAATGTCCCATATAACAGAACTTTCTACCATTAGATAACCAATTCAAACATGTCT
GTACAGCACAACATAGACAAACATAACGACCTTTTGTACTCTAACTATATAAATTCGTA
Found at i:7995491 original size:372 final size:371
Alignment explanation
Indices: 7994799--7995620 Score: 1060
Period size: 372 Copynumber: 2.2 Consensus size: 371
7994789 GTGCAAAACG
* * * **
7994799 CCTTCAATATTCCACTACTCAAATTTTAAAATGATTAGTGAAGACGTTTATTAAAAAAAAATGCC
1 CCTTCAATATACCAGTACTCAAATTTTAAAATGGTTAGTGAAGACGTTTATTCCAAAAAAATGCC
* * * * * *
7994864 TTTACTAATTCTTTTTAATTTATGTATATAATTATTGAAAGCATTTTTTGGGACAAATGCCTTCA
66 TTTAATAATTCTTTTTAATTTATATACATAATTATTGAAAGCATTTTTTAGAACAAATGCATTCA
* ** * * ** *
7994929 ATAATTTCTTTTAAAAATTTTTGGGATTATTAAAGGTGTCTTCCATTGAAAAATGCCTTCAATAT
131 ATAATTTCTTTTAAAAATTTTTGAGATTATTAAAGGCATCTTCAAGTGAAAAACACCTTAAATAT
* * *
7994994 TCCACTACTCAAATTTTAAGATAGTTAGTGAGGTATTTATTATAGAAAAATACCTTCACTGATTT
196 TCCACTACTCAAATTTTAAGATAGCTAGTGAGGCATTTATTATAGAAAAATACCTTCACTGATTC
** * *
7995059 CATTTAATTTATGTACATAATTATTGAAGGTGTTTTTTAAGAACAAATACCTTTAATAATTTCAT
261 CATTTAATTTATGTACATAATTATTGAAGGTCATTTTTAAGAACAAACACCTTCAATAATTTCAT
* *
7995124 TTTAAAAATTTATGAG-ATTATTAAATGCGTTTTCTAGCAAAAAATA
326 TTTAAAAATTT-TGAGAATTATTAAAAGCGTCTTCTAGCAAAAAATA
* * *
7995170 CCTTCAATATACTAGTACTCAAATTTTAAAATGGTTAATGAAGACGTTTATTCCAGAAAAATGCC
1 CCTTCAATATACCAGTACTCAAATTTTAAAATGGTTAGTGAAGACGTTTATTCCAAAAAAATGCC
*
7995235 TTTAATAATTCTTTTTAAATTT-TATACATAATTATT-AAAGGTATTTTTTTAGAACAAATGCAT
66 TTTAATAATTCTTTTT-AATTTATATACATAATTATTGAAA-GCA-TTTTTTAGAACAAATGCAT
* *
7995298 TCAATAATTTCTTTTTAAAATTTTTGAGATTATTAAAGGCATCTTTAAGTGAAAAACACCTTAAA
128 TCAATAATTTCTTTTAAAAATTTTTGAGATTATTAAAGGCATCTTCAAGTGAAAAACACCTTAAA
* * * * * * * *
7995363 TATTTCACTACTTAAATTTTAAGATGGCTAGTGAATGCGTTTATTCTAGAAAAATGCCTTCATTG
193 TATTCCACTACTCAAATTTTAAGATAGCTAGTG-AGGCATTTATTATAGAAAAATACCTTCACTG
* * *
7995428 ATTCCATTTAATTTATGTACATAATTATTGAAGG-CATTTTTGAGAACATACGCCTTCAATAATT
257 ATTCCATTTAATTTATGTACATAATTATTGAAGGTCATTTTTAAGAACAAACACCTTCAATAATT
* **
7995492 TCATTTTAAAAATTTTTAGAATTATTAAAAGCGTCTTCTAGTGAAAAATA
322 TCATTTTAAAAATTTTGAGAATTATTAAAAGCGTCTTCTAGCAAAAAATA
* * * * * **
7995542 CCTTTAATATACCAGTACTCAAATTTTAAGATAGTTAGTAAAGGCGTTTATTCCAAAAAAATATC
1 CCTTCAATATACCAGTACTCAAATTTTAAAATGGTTAGTGAAGACGTTTATTCCAAAAAAATGCC
*
7995607 TTCAATAATT-TTTT
66 TTTAATAATTCTTTT
7995621 AAAAATTATT
Statistics
Matches: 387, Mismatches: 59, Indels: 10
0.85 0.13 0.02
Matches are distributed among these distances:
370 3 0.01
371 93 0.24
372 233 0.60
373 58 0.15
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.41
Consensus pattern (371 bp):
CCTTCAATATACCAGTACTCAAATTTTAAAATGGTTAGTGAAGACGTTTATTCCAAAAAAATGCC
TTTAATAATTCTTTTTAATTTATATACATAATTATTGAAAGCATTTTTTAGAACAAATGCATTCA
ATAATTTCTTTTAAAAATTTTTGAGATTATTAAAGGCATCTTCAAGTGAAAAACACCTTAAATAT
TCCACTACTCAAATTTTAAGATAGCTAGTGAGGCATTTATTATAGAAAAATACCTTCACTGATTC
CATTTAATTTATGTACATAATTATTGAAGGTCATTTTTAAGAACAAACACCTTCAATAATTTCAT
TTTAAAAATTTTGAGAATTATTAAAAGCGTCTTCTAGCAAAAAATA
Found at i:7995591 original size:186 final size:186
Alignment explanation
Indices: 7994782--7995603 Score: 893
Period size: 186 Copynumber: 4.4 Consensus size: 186
7994772 ATTGAATGCA
* ** * *
7994782 TCTTCTAGTGCAAAACGCCTTCAATATTCCACTACTCAAATTTTAAAAT-GATTAGTGAAGACGT
1 TCTTCTAGTGAAAAATACCTTCAATATTCCACTACTCAAATTTTAAGATAG-TTAGTGAAGGCGT
** * * ** * *
7994846 TTATTAAAAAAAAATGCCTTTACTAATTCTTTTTAATTTATGTATATAATTATTGAAAGCATTTT
65 TTATTCCAGAAAAATGCCTTCACTAATTCCATTTAATTTATGTACATAATTATTGAAGGCATTTT
* * *
7994911 TTG-GGACAAATGCCTTCAATAATTTCTTTTAAAAATTTTTGGGATTATTAAAGGTG
130 TTGAGAACAAATGCCTTCAATAATTTCTTTTAAAAATTTTTGAGATTATTAAAGGCG
* * * **
7994967 TCTTCCATTGAAAAATGCCTTCAATATTCCACTACTCAAATTTTAAGATAGTTAGTG-AGGTATT
1 TCTTCTAGTGAAAAATACCTTCAATATTCCACTACTCAAATTTTAAGATAGTTAGTGAAGGCGTT
** * * * **
7995031 TATTATAGAAAAATACCTTCACTGATTTCATTTAATTTATGTACATAATTATTGAAGGTGTTTTT
66 TATTCCAGAAAAATGCCTTCACTAATTCCATTTAATTTATGTACATAATTATTGAAGGCATTTTT
* * * * *
7995096 TAAGAACAAATACCTTTAATAATTTCATTTTAAAAATTTATGAGATTATTAAATGCG
131 TGAGAACAAATGCCTTCAATAATTTC-TTTTAAAAATTTTTGAGATTATTAAAGGCG
* ** * * * * * * *
7995153 TTTTCTAGCAAAAAATACCTTCAATATACTAGTACTCAAATTTTAAAATGGTTAATGAAGACGTT
1 TCTTCTAGTGAAAAATACCTTCAATATTCCACTACTCAAATTTTAAGATAGTTAGTGAAGGCGTT
* * ** * * *
7995218 TATTCCAGAAAAATGCCTTTAATAATTCTTTTTAAATTT-TATACATAATTATTAAAGGTATTTT
66 TATTCCAGAAAAATGCCTTCACTAATTCCATTT-AATTTATGTACATAATTATTGAAGGCATTTT
* * * *
7995282 TTTAGAACAAATGCATTCAATAATTTCTTTTTAAAATTTTTGAGATTATTAAAGGCA
130 TTGAGAACAAATGCCTTCAATAATTTCTTTTAAAAATTTTTGAGATTATTAAAGGCG
* * * * * * *
7995339 TCTT-TAAGTGAAAAACACCTTAAATATTTCACTACTTAAATTTTAAGATGGCTAGTGAATGCGT
1 TCTTCT-AGTGAAAAATACCTTCAATATTCCACTACTCAAATTTTAAGATAGTTAGTGAAGGCGT
* * *
7995403 TTATTCTAGAAAAATGCCTTCATTGATTCCATTTAATTTATGTACATAATTATTGAAGGCA-TTT
65 TTATTCCAGAAAAATGCCTTCACTAATTCCATTTAATTTATGTACATAATTATTGAAGGCATTTT
* * *
7995467 TTGAGAACATACGCCTTCAATAATTTCATTTTAAAAATTTTT-AGAATTATTAAAAGCG
130 TTGAGAACAAATGCCTTCAATAATTTC-TTTTAAAAATTTTTGAG-ATTATTAAAGGCG
* * * *
7995525 TCTTCTAGTGAAAAATACCTTTAATATACCAGTACTCAAATTTTAAGATAGTTAGTAAAGGCGTT
1 TCTTCTAGTGAAAAATACCTTCAATATTCCACTACTCAAATTTTAAGATAGTTAGTGAAGGCGTT
*
7995590 TATTCCAAAAAAAT
66 TATTCCAGAAAAAT
7995604 ATCTTCAATA
Statistics
Matches: 521, Mismatches: 106, Indels: 19
0.81 0.16 0.03
Matches are distributed among these distances:
184 58 0.11
185 104 0.20
186 280 0.54
187 74 0.14
188 5 0.01
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40
Consensus pattern (186 bp):
TCTTCTAGTGAAAAATACCTTCAATATTCCACTACTCAAATTTTAAGATAGTTAGTGAAGGCGTT
TATTCCAGAAAAATGCCTTCACTAATTCCATTTAATTTATGTACATAATTATTGAAGGCATTTTT
TGAGAACAAATGCCTTCAATAATTTCTTTTAAAAATTTTTGAGATTATTAAAGGCG
Found at i:7995717 original size:115 final size:113
Alignment explanation
Indices: 7995511--7995732 Score: 320
Period size: 115 Copynumber: 1.9 Consensus size: 113
7995501 AAATTTTTAG
*
7995511 AATTATTAAAAGCGTCTTCTAGTGAAAAATACCTTTAATATACCAGTACTCAAATTTTAAGATAG
1 AATTATTAAAAGCGTCTTCTAGTGAAAAATACCTTTAATATACCACTACTCAAATTTTAAGATAG
*
7995576 TTAGTAAAGGCGTTTATTCCAAAAAAATATCTTCAATAATTTTTTAAA
66 TTAGTAAAGGCGTTTATTCCAAAAAAATACCTTCAATAATTTTTTAAA
* **
7995624 AATTATTAAAAGCGTCTTCTAGTGAAAAA-AGTCTATTAAATATTTCACTACTCAAATTTTAAGA
1 AATTATTAAAAGCGTCTTCTAGTGAAAAATA-CCT-TT-AATATACCACTACTCAAATTTTAAGA
* * * * *
7995688 TGGTTAGTGAAGGCGTTTATTCTAGAAAAATACCTTCACTAATTT
63 TAGTTAGTAAAGGCGTTTATTCCAAAAAAATACCTTCAATAATTT
7995733 GTTTTAATTT
Statistics
Matches: 96, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
112 1 0.01
113 31 0.32
114 2 0.02
115 62 0.65
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (113 bp):
AATTATTAAAAGCGTCTTCTAGTGAAAAATACCTTTAATATACCACTACTCAAATTTTAAGATAG
TTAGTAAAGGCGTTTATTCCAAAAAAATACCTTCAATAATTTTTTAAA
Found at i:7996678 original size:12 final size:12
Alignment explanation
Indices: 7996609--7996710 Score: 80
Period size: 12 Copynumber: 8.1 Consensus size: 12
7996599 GTGATATTAT
*
7996609 TTTGCTGAATGG
1 TTTGTTGAATGG
7996621 TATTGTATGATATTGG
1 T-TTGT-TGA-A-TGG
* **
7996637 TATGTTGAATCA
1 TTTGTTGAATGG
* *
7996649 TATGTTGAATCG
1 TTTGTTGAATGG
*
7996661 TATGTTGAATGG
1 TTTGTTGAATGG
7996673 TTTGTTGAATGG
1 TTTGTTGAATGG
7996685 TGTT-TCTGAATGG
1 T-TTGT-TGAATGG
7996698 TTTGTTGAATGG
1 TTTGTTGAATGG
7996710 T
1 T
7996711 GTGTCTGAGC
Statistics
Matches: 76, Mismatches: 7, Indels: 14
0.78 0.07 0.14
Matches are distributed among these distances:
12 47 0.62
13 15 0.20
14 6 0.08
15 4 0.05
16 4 0.05
ACGTcount: A:0.22, C:0.04, G:0.28, T:0.46
Consensus pattern (12 bp):
TTTGTTGAATGG
Found at i:7996698 original size:25 final size:25
Alignment explanation
Indices: 7996651--7996718 Score: 102
Period size: 25 Copynumber: 2.8 Consensus size: 25
7996641 TTGAATCATA
* *
7996651 TGTTGAATCGTATGT-TGAATGGTT
1 TGTTGAATGGTGTGTCTGAATGGTT
*
7996675 TGTTGAATGGTGTTTCTGAATGGTT
1 TGTTGAATGGTGTGTCTGAATGGTT
7996700 TGTTGAATGGTGTGTCTGA
1 TGTTGAATGGTGTGTCTGA
7996719 GCACATTGCT
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
24 12 0.31
25 27 0.69
ACGTcount: A:0.18, C:0.04, G:0.32, T:0.46
Consensus pattern (25 bp):
TGTTGAATGGTGTGTCTGAATGGTT
Found at i:8007557 original size:20 final size:20
Alignment explanation
Indices: 8007532--8007571 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8007522 ATAATCCCTA
*
8007532 CAAAATAATAGGCATTATAT
1 CAAAATAATAGGCATGATAT
8007552 CAAAATAATAGGCATGATAT
1 CAAAATAATAGGCATGATAT
8007572 TATATGTCAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.28
Consensus pattern (20 bp):
CAAAATAATAGGCATGATAT
Found at i:8010364 original size:63 final size:63
Alignment explanation
Indices: 8010287--8010438 Score: 214
Period size: 63 Copynumber: 2.4 Consensus size: 63
8010277 CCATTTGTAA
* ***
8010287 ACACAAATGCCTTAATTGATATGTTTTAAAAATTATAATTTAAATCAATTAAGGCATTTCTGT
1 ACACAAATGCCTTAATTGATTTGTTTTAAAAATTATAAAACAAATCAATTAAGGCATTTCTGT
* * *
8010350 ACACAAATGTCTTAATTGATTTGTTTTAAAAATTATAAAACAGATCAATTAAGGCATTTGTGT
1 ACACAAATGCCTTAATTGATTTGTTTTAAAAATTATAAAACAAATCAATTAAGGCATTTCTGT
* **
8010413 ACAAAAACACCTTAATTGATTTGTTT
1 ACACAAATGCCTTAATTGATTTGTTT
8010439 ATATTTTTTA
Statistics
Matches: 78, Mismatches: 11, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
63 78 1.00
ACGTcount: A:0.39, C:0.11, G:0.11, T:0.39
Consensus pattern (63 bp):
ACACAAATGCCTTAATTGATTTGTTTTAAAAATTATAAAACAAATCAATTAAGGCATTTCTGT
Found at i:8012212 original size:15 final size:16
Alignment explanation
Indices: 8012168--8012214 Score: 55
Period size: 15 Copynumber: 3.1 Consensus size: 16
8012158 TATAATATCC
*
8012168 ATATTAAATTAATTAC
1 ATATTAAATTAATTAT
8012184 ATA--AAACTTAATTAT
1 ATATTAAA-TTAATTAT
8012199 ATATTAAATT-ATTAT
1 ATATTAAATTAATTAT
8012214 A
1 A
8012215 AATCTATACA
Statistics
Matches: 27, Mismatches: 1, Indels: 7
0.77 0.03 0.20
Matches are distributed among these distances:
14 3 0.11
15 16 0.59
16 5 0.19
17 3 0.11
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATTAAATTAATTAT
Found at i:8014045 original size:16 final size:16
Alignment explanation
Indices: 8014024--8014084 Score: 56
Period size: 16 Copynumber: 3.9 Consensus size: 16
8014014 TCCACAATCA
*
8014024 AATAAAATATAATAAT
1 AATAAAATATAAAAAT
8014040 AATAAAGA-ATAAAAAT
1 AATAAA-ATATAAAAAT
* *
8014056 ATAAAAAACATAAAAAT
1 A-ATAAAATATAAAAAT
8014073 AA-AAAATA-AAAA
1 AATAAAATATAAAA
8014085 TTAAGTTACT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
14 4 0.10
15 5 0.13
16 16 0.41
17 14 0.36
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.20
Consensus pattern (16 bp):
AATAAAATATAAAAAT
Found at i:8014056 original size:6 final size:6
Alignment explanation
Indices: 8014034--8014085 Score: 52
Period size: 6 Copynumber: 8.5 Consensus size: 6
8014024 AATAAAATAT
* * *
8014034 AATAAT AATAAA GAATAAA AATATA AA-AAA CATAAA AATAAAA AATAAA
1 AATAAA AATAAA -AATAAA AATAAA AATAAA AATAAA AAT-AAA AATAAA
8014083 AAT
1 AAT
8014086 TAAGTTACTT
Statistics
Matches: 38, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
5 3 0.08
6 23 0.61
7 12 0.32
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:8014057 original size:24 final size:23
Alignment explanation
Indices: 8014023--8014084 Score: 76
Period size: 23 Copynumber: 2.7 Consensus size: 23
8014013 ATCCACAATC
*
8014023 AAAT-AAAATATAATAATA-ATAA
1 AAATAAAAATATAA-AAAACATAA
8014045 AGAATAAAAATATAAAAAACATAA
1 A-AATAAAAATATAAAAAACATAA
8014069 AAATAAAAA-ATAAAAA
1 AAATAAAAATATAAAAA
8014085 TTAAGTTACT
Statistics
Matches: 36, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
22 8 0.22
23 14 0.39
24 14 0.39
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (23 bp):
AAATAAAAATATAAAAAACATAA
Found at i:8015283 original size:13 final size:15
Alignment explanation
Indices: 8015265--8015298 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
8015255 TTGAGATATA
8015265 TTTTAA-TT-TTATT
1 TTTTAAGTTATTATT
8015278 TTTTAAGTTATTATT
1 TTTTAAGTTATTATT
8015293 TTTTAA
1 TTTTAA
8015299 ATATATTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 6 0.32
14 2 0.11
15 11 0.58
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (15 bp):
TTTTAAGTTATTATT
Found at i:8015305 original size:16 final size:15
Alignment explanation
Indices: 8015265--8015305 Score: 50
Period size: 15 Copynumber: 2.8 Consensus size: 15
8015255 TTGAGATATA
8015265 TTTT-AATT-TTATT
1 TTTTAAATTATTATT
*
8015278 TTTTAAGTTATTATT
1 TTTTAAATTATTATT
8015293 TTTTAAATATATT
1 TTTTAAAT-TATT
8015306 CTAAAAATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
13 4 0.17
14 3 0.13
15 12 0.52
16 4 0.17
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.68
Consensus pattern (15 bp):
TTTTAAATTATTATT
Found at i:8027540 original size:48 final size:48
Alignment explanation
Indices: 8027465--8027562 Score: 178
Period size: 48 Copynumber: 2.0 Consensus size: 48
8027455 TTTTGTACTG
*
8027465 TAAAGAAAGTTTTATCTTCCTCGGGTTTTTAGCTCATGACTACTATGA
1 TAAAGAAAGTTTTATCTTCCTCAGGTTTTTAGCTCATGACTACTATGA
*
8027513 TAAAGAAAGTTTTATCTTCCTCAGGTTTTTAGTTCATGACTACTATGA
1 TAAAGAAAGTTTTATCTTCCTCAGGTTTTTAGCTCATGACTACTATGA
8027561 TA
1 TA
8027563 TACCTCTCAA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 48 1.00
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (48 bp):
TAAAGAAAGTTTTATCTTCCTCAGGTTTTTAGCTCATGACTACTATGA
Found at i:8032184 original size:24 final size:25
Alignment explanation
Indices: 8032152--8032203 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 25
8032142 TAATTAAAAT
*
8032152 TTTTAAATTTTAAAA-TATTATATTA
1 TTTTAAA-TTAAAAATTATTATATTA
*
8032177 TTTT-AATTAAAAATTATTATTTTA
1 TTTTAAATTAAAAATTATTATATTA
8032201 TTT
1 TTT
8032204 ATATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
23 6 0.25
24 14 0.58
25 4 0.17
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (25 bp):
TTTTAAATTAAAAATTATTATATTA
Found at i:8032438 original size:17 final size:17
Alignment explanation
Indices: 8032406--8032453 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
8032396 AACAACAAAT
* *
8032406 TTCAAATTAAACTTAAA
1 TTCAAATTTAATTTAAA
**
8032423 TTTGAATTTAATTTAAA
1 TTCAAATTTAATTTAAA
8032440 TTCAAATTTAATTT
1 TTCAAATTTAATTT
8032454 TTTTATTGTA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 25 1.00
ACGTcount: A:0.44, C:0.06, G:0.02, T:0.48
Consensus pattern (17 bp):
TTCAAATTTAATTTAAA
Found at i:8032860 original size:21 final size:20
Alignment explanation
Indices: 8032836--8032883 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
8032826 AATTATTATT
8032836 ATTATTATTATAATTTAAAAA
1 ATTATTATTATAA-TTAAAAA
* *
8032857 ATTATAATTATGATTAAAAA
1 ATTATTATTATAATTAAAAA
8032877 ATT-TTAT
1 ATTATTAT
8032884 ACAAAATAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 3 0.12
20 10 0.42
21 11 0.46
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (20 bp):
ATTATTATTATAATTAAAAA
Found at i:8041286 original size:2 final size:2
Alignment explanation
Indices: 8041275--8041304 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
8041265 CAAATTCCCA
8041275 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8041305 AACTCCTAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 26 0.96
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:8041709 original size:21 final size:18
Alignment explanation
Indices: 8041677--8041725 Score: 53
Period size: 21 Copynumber: 2.6 Consensus size: 18
8041667 AAAAAAAAAA
8041677 AAAAGTAAATAAACTTAATT
1 AAAAGTAAATAAAC-T-ATT
*
8041697 AAAAGATATATAAACTATT
1 AAAAG-TAAATAAACTATT
*
8041716 AAAAATAAAT
1 AAAAGTAAAT
8041726 GTGATTAATT
Statistics
Matches: 25, Mismatches: 3, Indels: 4
0.78 0.09 0.12
Matches are distributed among these distances:
18 4 0.16
19 7 0.28
20 6 0.24
21 8 0.32
ACGTcount: A:0.63, C:0.04, G:0.04, T:0.29
Consensus pattern (18 bp):
AAAAGTAAATAAACTATT
Found at i:8042266 original size:20 final size:20
Alignment explanation
Indices: 8042229--8042267 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
8042219 TTTTATTTTT
*
8042229 ATATATTTATGTAAGATATC
1 ATATATTTATATAAGATATC
*
8042249 ATATATTTATATATGATAT
1 ATATATTTATATAAGATAT
8042268 AAAATTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.41, C:0.03, G:0.08, T:0.49
Consensus pattern (20 bp):
ATATATTTATATAAGATATC
Found at i:8042439 original size:14 final size:14
Alignment explanation
Indices: 8042420--8042461 Score: 66
Period size: 14 Copynumber: 3.0 Consensus size: 14
8042410 ATAAAATGAA
8042420 ATTAAAATTAAAAT
1 ATTAAAATTAAAAT
8042434 ATTAAAATTAAAAT
1 ATTAAAATTAAAAT
* *
8042448 ATCAAAATAAAAAT
1 ATTAAAATTAAAAT
8042462 TCAATACGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
14 26 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (14 bp):
ATTAAAATTAAAAT
Found at i:8042460 original size:20 final size:19
Alignment explanation
Indices: 8042418--8042462 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
8042408 ATATAAAATG
8042418 AAATTAAAATTAAAATATTA
1 AAATTAAAATTAAAATA-TA
8042438 AAATTAAAATATCAAAATA-A
1 AAATTAAAAT-T-AAAATATA
8042458 AAATT
1 AAATT
8042463 CAATACGTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
20 16 0.70
21 1 0.04
22 6 0.26
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (19 bp):
AAATTAAAATTAAAATATA
Found at i:8042601 original size:16 final size:16
Alignment explanation
Indices: 8042556--8042602 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 16
8042546 AGTATAGGAA
8042556 ATATGAGAAAAAAAAG
1 ATATGAGAAAAAAAAG
*
8042572 AT-T-AAATAATAAAAAG
1 ATATGAGA-AA-AAAAAG
8042588 ATATGAGAAAAAAAA
1 ATATGAGAAAAAAAA
8042603 TCTTAACTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 8
0.71 0.06 0.23
Matches are distributed among these distances:
14 2 0.08
15 3 0.12
16 15 0.60
17 3 0.12
18 2 0.08
ACGTcount: A:0.70, C:0.00, G:0.13, T:0.17
Consensus pattern (16 bp):
ATATGAGAAAAAAAAG
Found at i:8042888 original size:75 final size:77
Alignment explanation
Indices: 8042719--8042889 Score: 206
Period size: 77 Copynumber: 2.2 Consensus size: 77
8042709 AAAAAATAAA
* * * *
8042719 TAAAATTAATTAAGAGAGATATAAGCTATTAAAAATAAATGTAATTAATTTAATCAAAGTCAAAT
1 TAAAATTAATTGAGAGAGATATAAGATATCAAAAATAAATATAATTAATTTAATCAAAGTCAAAT
*
8042784 TAAATTAGGAAT
66 TAAATTAGAAAT
* * * * *
8042796 TAAAATTAATTGTGAGAGATTTAATATATCAAAAGTAAA-ATAATTAATTTAATCTGAA-TCAAA
1 TAAAATTAATTGAGAGAGATATAAGATATCAAAAATAAATATAATTAATTTAATC-AAAGTCAAA
8042859 TT-AATTA-AATAT
65 TTAAATTAGAA-AT
8042871 TAAAATTAATTGAGAGAGA
1 TAAAATTAATTGAGAGAGA
8042890 AATTTAAACT
Statistics
Matches: 81, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
74 1 0.01
75 25 0.31
76 21 0.26
77 34 0.42
ACGTcount: A:0.52, C:0.04, G:0.11, T:0.34
Consensus pattern (77 bp):
TAAAATTAATTGAGAGAGATATAAGATATCAAAAATAAATATAATTAATTTAATCAAAGTCAAAT
TAAATTAGAAAT
Found at i:8043128 original size:16 final size:16
Alignment explanation
Indices: 8043107--8043139 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8043097 CAAAAGTGTC
8043107 TATATATCAATA-AATT
1 TATATAT-AATATAATT
8043123 TATATATAATATAATT
1 TATATATAATATAATT
8043139 T
1 T
8043140 TTTTAATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (16 bp):
TATATATAATATAATT
Found at i:8047830 original size:50 final size:48
Alignment explanation
Indices: 8047725--8047831 Score: 139
Period size: 48 Copynumber: 2.2 Consensus size: 48
8047715 AATCAAAATC
* *
8047725 AAAT-TAAAT-TAAGAATTAAAATTAATTGAGAGAGATTTAATTTGTT
1 AAATATAAATGTAAGAATTAAAATTAATTGAGAGAGATTTAAGTTATT
*
8047771 AAA-ATTAAATGTATGAATTAAAATTAATTGAGAGAGAAATTTAAGTTATT
1 AAATA-TAAATGTAAGAATTAAAATTAATTGAGAGAG--ATTTAAGTTATT
8047821 AAATATAAATG
1 AAATATAAATG
8047832 CAATTAATTT
Statistics
Matches: 52, Mismatches: 3, Indels: 8
0.83 0.05 0.13
Matches are distributed among these distances:
46 3 0.06
47 5 0.10
48 24 0.46
50 19 0.37
51 1 0.02
ACGTcount: A:0.50, C:0.00, G:0.13, T:0.36
Consensus pattern (48 bp):
AAATATAAATGTAAGAATTAAAATTAATTGAGAGAGATTTAAGTTATT
Found at i:8048181 original size:78 final size:77
Alignment explanation
Indices: 8048020--8048192 Score: 226
Period size: 78 Copynumber: 2.2 Consensus size: 77
8048010 TAATATAATC
* * *
8048020 AAAATCAAATTAAATTAAGAATTAAAATTAATTGAGAGAGATTTAATCTATTAAGAGTAAATATA
1 AAAATCAAATCAAATTAAGAATTAAAATTAATTGAGAGAAATTTAAGCTATTAAGAGTAAATATA
8048085 ATTAATTTAGTA
66 ATTAATTTAGTA
*
8048097 AAAATCAAATC-AATTAAGAATTAAAATTAATTGAAAGAGAAATTTAAGCTGTTAA-A-TATAAT
1 AAAATCAAATCAAATTAAGAATTAAAATTAATTG--AGAGAAATTTAAGCTATTAAGAGTA-AA-
* *
8048159 TATAATTAATTTGGTT
62 TATAATTAATTTAGTA
*
8048175 AGAATCAAATCAAATTAA
1 AAAATCAAATCAAATTAA
8048193 ATCCAATTAA
Statistics
Matches: 84, Mismatches: 7, Indels: 8
0.85 0.07 0.08
Matches are distributed among these distances:
76 24 0.29
77 13 0.15
78 41 0.49
79 6 0.07
ACGTcount: A:0.52, C:0.04, G:0.10, T:0.34
Consensus pattern (77 bp):
AAAATCAAATCAAATTAAGAATTAAAATTAATTGAGAGAAATTTAAGCTATTAAGAGTAAATATA
ATTAATTTAGTA
Found at i:8048200 original size:10 final size:10
Alignment explanation
Indices: 8048181--8048210 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
8048171 GGTTAGAATC
8048181 AAATCAAATT
1 AAATCAAATT
*
8048191 AAATCCAATT
1 AAATCAAATT
8048201 AAATCAAATT
1 AAATCAAATT
8048211 GAAGATATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.57, C:0.13, G:0.00, T:0.30
Consensus pattern (10 bp):
AAATCAAATT
Found at i:8049142 original size:24 final size:25
Alignment explanation
Indices: 8049115--8049162 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
8049105 TTCATGTTAG
8049115 AATTTAAA-TAAAAAATTAAAAAAA
1 AATTTAAATTAAAAAATTAAAAAAA
* *
8049139 AATTTAAATTCAAAAATTTAAAAA
1 AATTTAAATTAAAAAATTAAAAAA
8049163 GATAATAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 8 0.38
25 13 0.62
ACGTcount: A:0.69, C:0.02, G:0.00, T:0.29
Consensus pattern (25 bp):
AATTTAAATTAAAAAATTAAAAAAA
Found at i:8053651 original size:24 final size:25
Alignment explanation
Indices: 8053589--8053658 Score: 74
Period size: 26 Copynumber: 2.8 Consensus size: 25
8053579 TTAATAAAAT
*
8053589 TAAAA-ATACATATTTAATATTTATA
1 TAAAATATA-ATATATAATATTTATA
*
8053614 TATAAATAACAATATATAAT-TTTATA
1 TA-AAAT-ATAATATATAATATTTATA
8053640 TAAAATATAATATA-AATAT
1 TAAAATATAATATATAATAT
8053659 ATAAATTATT
Statistics
Matches: 38, Mismatches: 3, Indels: 9
0.76 0.06 0.18
Matches are distributed among these distances:
23 3 0.08
24 8 0.21
25 6 0.16
26 11 0.29
27 8 0.21
28 2 0.05
ACGTcount: A:0.56, C:0.03, G:0.00, T:0.41
Consensus pattern (25 bp):
TAAAATATAATATATAATATTTATA
Found at i:8054448 original size:10 final size:10
Alignment explanation
Indices: 8054422--8054467 Score: 56
Period size: 10 Copynumber: 4.4 Consensus size: 10
8054412 ATATTATTTT
8054422 TAAATATAAATA
1 TAAATAT-AA-A
*
8054434 TAAATTTAAA
1 TAAATATAAA
8054444 TAAATATAAA
1 TAAATATAAA
*
8054454 TATATATAAA
1 TAAATATAAA
8054464 TAAA
1 TAAA
8054468 AATTAAAAAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
10 22 0.73
11 2 0.07
12 6 0.20
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (10 bp):
TAAATATAAA
Found at i:8054448 original size:16 final size:16
Alignment explanation
Indices: 8054427--8054471 Score: 63
Period size: 16 Copynumber: 2.8 Consensus size: 16
8054417 ATTTTTAAAT
8054427 ATAAATATAAATTTAA
1 ATAAATATAAATTTAA
* *
8054443 ATAAATATAAATATAT
1 ATAAATATAAATTTAA
*
8054459 ATAAATAAAAATT
1 ATAAATATAAATT
8054472 AAAAATAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (16 bp):
ATAAATATAAATTTAA
Found at i:8054494 original size:6 final size:6
Alignment explanation
Indices: 8054422--8054479 Score: 54
Period size: 6 Copynumber: 10.5 Consensus size: 6
8054412 ATATTATTTT
*
8054422 TAAATA TAAATA TAAAT- TTAA-A TAAATA TAAATA T--ATA TAAATA
1 TAAATA TAAATA TAAATA TAAATA TAAATA TAAATA TAAATA TAAATA
* *
8054466 AAAAT- TAAAAA TAA
1 TAAATA TAAATA TAA
8054480 TTTTTTATAA
Statistics
Matches: 42, Mismatches: 5, Indels: 10
0.74 0.09 0.18
Matches are distributed among these distances:
4 4 0.10
5 9 0.21
6 29 0.69
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (6 bp):
TAAATA
Found at i:8056628 original size:16 final size:17
Alignment explanation
Indices: 8056598--8056631 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8056588 TGGAAAACCT
8056598 AAAAAACCTAGAAGAAC
1 AAAAAACCTAGAAGAAC
*
8056615 AAAAAAGCTA-AAGAAC
1 AAAAAACCTAGAAGAAC
8056631 A
1 A
8056632 TTAAAGATAG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.68, C:0.15, G:0.12, T:0.06
Consensus pattern (17 bp):
AAAAAACCTAGAAGAAC
Found at i:8062056 original size:20 final size:20
Alignment explanation
Indices: 8062016--8062054 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
8062006 AATGAAATCC
8062016 CTAGAAACCAATGACCATTT
1 CTAGAAACCAATGACCATTT
*
8062036 CTAGAATCCAATG-CCATTT
1 CTAGAAACCAATGACCATTT
8062055 TCCAGTCTTC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 6 0.33
20 12 0.67
ACGTcount: A:0.36, C:0.26, G:0.10, T:0.28
Consensus pattern (20 bp):
CTAGAAACCAATGACCATTT
Found at i:8062684 original size:101 final size:101
Alignment explanation
Indices: 8062501--8062685 Score: 241
Period size: 101 Copynumber: 1.8 Consensus size: 101
8062491 AAAAGTTTTT
* * * *
8062501 TTTTTGAGAAAAAAGTTGAAATATCAATTTTTCTTAAAAGAAAATCATTTTAAAAATTGAAGAAA
1 TTTTTAAGAAAAAAGTTGAAATATCAATTTTTCTTAAAAGAAAATAATTTCAAAAAATGAAGAAA
* *
8062566 AAGTTAGAATACCATTTTTCCTTAAATTAAATAAAA
66 AAGTTAAAATACAATTTTTCCTTAAATTAAATAAAA
* *
8062602 TTTTTAAGGAAAAAGTTGAAATATTAATTTTTTCTTAAACA-AAAATAATTTCAAAAAAT-AAG-
1 TTTTTAAGAAAAAAGTTGAAATATCAA-TTTTTCTTAAA-AGAAAATAATTTCAAAAAATGAAGA
*
8062664 AAAAGTTAAAATATTAATTTTT
64 AAAAGTTAAAATA-CAATTTTT
8062686 TTCTCAAGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
100 12 0.17
101 33 0.46
102 26 0.36
103 1 0.01
ACGTcount: A:0.49, C:0.05, G:0.08, T:0.37
Consensus pattern (101 bp):
TTTTTAAGAAAAAAGTTGAAATATCAATTTTTCTTAAAAGAAAATAATTTCAAAAAATGAAGAAA
AAGTTAAAATACAATTTTTCCTTAAATTAAATAAAA
Found at i:8067539 original size:9 final size:9
Alignment explanation
Indices: 8067498--8067540 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
8067488 ATCTATTCAT
*
8067498 AAAAGAAAA
1 AAAATAAAA
8067507 AAAATACAAA
1 AAAATA-AAA
*
8067517 AACAATGAAA
1 AA-AATAAAA
8067527 AAAATAAAA
1 AAAATAAAA
8067536 AAAAT
1 AAAAT
8067541 CTCTTATGCA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
9 16 0.55
10 10 0.34
11 3 0.10
ACGTcount: A:0.81, C:0.05, G:0.05, T:0.09
Consensus pattern (9 bp):
AAAATAAAA
Found at i:8069112 original size:32 final size:32
Alignment explanation
Indices: 8069053--8069113 Score: 77
Period size: 32 Copynumber: 1.9 Consensus size: 32
8069043 TCATCTCTAC
** *
8069053 CTTAGCTCAGTCTAGTCATTTTCATTTTTGAT
1 CTTAGCTCAGTCTAGTCACCTTAATTTTTGAT
* *
8069085 CTTAGCTTAGTCTGGTCACCTTAATTTTT
1 CTTAGCTCAGTCTAGTCACCTTAATTTTT
8069114 TTTTTCGAAC
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 24 1.00
ACGTcount: A:0.18, C:0.20, G:0.13, T:0.49
Consensus pattern (32 bp):
CTTAGCTCAGTCTAGTCACCTTAATTTTTGAT
Found at i:8069196 original size:32 final size:32
Alignment explanation
Indices: 8069153--8069231 Score: 83
Period size: 32 Copynumber: 2.4 Consensus size: 32
8069143 TTTGTTTTCA
8069153 ACTTAGGCTTAGTCTTA-TCA-TTTTCACTTTTG
1 ACTTA-GCTTAGTCTTAGTCACTTTT-ACTTTTG
*
8069185 ATCTTAGCTTAGT-TTAGTCACTTTTATTTTTG
1 A-CTTAGCTTAGTCTTAGTCACTTTTACTTTTG
*
8069217 ACATTGGCTTAGTCT
1 AC-TTAGCTTAGTCT
8069232 GGTCACCTTA
Statistics
Matches: 40, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
31 4 0.10
32 27 0.68
33 9 0.22
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (32 bp):
ACTTAGCTTAGTCTTAGTCACTTTTACTTTTG
Found at i:8069485 original size:27 final size:27
Alignment explanation
Indices: 8069455--8069507 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
8069445 TTTTTTTTAT
* *
8069455 TTCGGCTAAGACTAAGTCATTTTGTTC
1 TTCGACTAAGACCAAGTCATTTTGTTC
*
8069482 TTCGATTAAGACCAAGTCATTTTGTT
1 TTCGACTAAGACCAAGTCATTTTGTT
8069508 TTTCTATTTC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.25, C:0.17, G:0.17, T:0.42
Consensus pattern (27 bp):
TTCGACTAAGACCAAGTCATTTTGTTC
Found at i:8069557 original size:33 final size:33
Alignment explanation
Indices: 8069488--8069558 Score: 81
Period size: 33 Copynumber: 2.2 Consensus size: 33
8069478 GTTCTTCGAT
* * * * *
8069488 TAAGACCAAGTCATTTTGTTTTTCTATTTCGTC
1 TAAGACCAAGTCATTGTATTTTTCAACTTCGGC
8069521 TAAGACCAAGTCATTGTATTTTTCAACCTT-GGC
1 TAAGACCAAGTCATTGTATTTTTCAA-CTTCGGC
8069554 TAAGA
1 TAAGA
8069559 TCATCATCGC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
33 30 0.94
34 2 0.06
ACGTcount: A:0.27, C:0.18, G:0.14, T:0.41
Consensus pattern (33 bp):
TAAGACCAAGTCATTGTATTTTTCAACTTCGGC
Found at i:8069677 original size:32 final size:32
Alignment explanation
Indices: 8069593--8069682 Score: 85
Period size: 32 Copynumber: 2.8 Consensus size: 32
8069583 GGCTAAGTCT
* * ** *
8069593 AAGTCATTTCATTTCAACTTTTGGCTCAATCT
1 AAGTCATTACATTTTAACTTTTGATTCAATCC
* *
8069625 AAGTCA--CCATTTTATGACTTTTGATTCTATCC
1 AAGTCATTACATTTTA--ACTTTTGATTCAATCC
8069657 AAGTCATTACATTTTAACTTTTGATT
1 AAGTCATTACATTTTAACTTTTGATT
8069683 AGGTCCAAAT
Statistics
Matches: 47, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
30 6 0.13
32 34 0.72
34 7 0.15
ACGTcount: A:0.27, C:0.19, G:0.09, T:0.46
Consensus pattern (32 bp):
AAGTCATTACATTTTAACTTTTGATTCAATCC
Found at i:8070057 original size:16 final size:17
Alignment explanation
Indices: 8070036--8070067 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
8070026 TTTACCTATT
8070036 AATTATCTT-TAATTTC
1 AATTATCTTATAATTTC
8070052 AATTATCTTATAATTT
1 AATTATCTTATAATTT
8070068 ATCTGATTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.34, C:0.09, G:0.00, T:0.56
Consensus pattern (17 bp):
AATTATCTTATAATTTC
Found at i:8071161 original size:53 final size:55
Alignment explanation
Indices: 8071040--8071337 Score: 162
Period size: 53 Copynumber: 5.6 Consensus size: 55
8071030 TTTAAATAAT
*
8071040 AATT-AATAATTTTAAAAATTTTTAAGAAAAAGTTGAAATATCAAATTTTTCTCAA
1 AATTAAATAATTTTAAAAA-TTTGAAGAAAAAGTTGAAATATCAAATTTTTCTCAA
** * * * * **
8071095 AAGAAAATCATTTTAAAAA-TTGAGGAAAAAGTTTAAATA-CCAATTTTTCTTTA
1 AATTAAATAATTTTAAAAATTTGAAGAAAAAGTTGAAATATCAAATTTTTCTCAA
* * * *
8071148 AATTAAATAATTTT-----TTTTAGGAAAAAGTTGAAATATCAAATTTTCCTTAA
1 AATTAAATAATTTTAAAAATTTGAAGAAAAAGTTGAAATATCAAATTTTTCTCAA
* * * * * *
8071198 ACA-AAAATAATTTCAAAAA-AT-AAGGAAAAGCT--AATATACTAACA-TTTTCCCAA
1 A-ATTAAATAATTTTAAAAATTTGAAGAAAAAGTTGAAATAT-C-AA-ATTTTTCTCAA
* * * * * *
8071251 GATTAAAT--TTTCAAAATTTTG-AGAAAAAATTTGAAATATCAAATTTTCCTCTA
1 AATTAAATAATTTTAAAAATTTGAAG-AAAAAGTTGAAATATCAAATTTTTCTCAA
** * *
8071304 AAGAAAATAATTTCAAACATTTGAAGAAAAAGTT
1 AATTAAATAATTTTAAAAATTTGAAGAAAAAGTT
8071338 AAAGAATTAA
Statistics
Matches: 179, Mismatches: 42, Indels: 44
0.68 0.16 0.17
Matches are distributed among these distances:
49 18 0.10
50 21 0.12
51 14 0.08
52 6 0.03
53 60 0.34
54 20 0.11
55 25 0.14
56 15 0.08
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.35
Consensus pattern (55 bp):
AATTAAATAATTTTAAAAATTTGAAGAAAAAGTTGAAATATCAAATTTTTCTCAA
Found at i:8071246 original size:103 final size:101
Alignment explanation
Indices: 8071057--8071320 Score: 248
Period size: 103 Copynumber: 2.5 Consensus size: 101
8071047 AATTTTAAAA
* * * * * * *
8071057 ATTTTTAAGAAAAAGTTGAAATATCAAATTTTTCTCAAAAGAAAATCATTTTAAAAATTGAGGAA
1 ATTTTTAGGAAAAAGTTGAAATATCAAATTTTCCTTAAAA-AAAATAATTTCAAAAAATAAGGAA
* * **
8071122 AAAGTTTAAATACCAATTTTTCTTTAA-ATTAAATAATTT
65 AAAGTCTAAATACCAAATTTTC-CCAAGATTAAAT--TTT
8071161 -TTTTTAGGAAAAAGTTGAAATATCAAATTTTCCTTAAACAAAAATAATTTCAAAAAATAAGG-A
1 ATTTTTAGGAAAAAGTTGAAATATCAAATTTTCCTTAAA-AAAAATAATTTCAAAAAATAAGGAA
*
8071224 AAAG-CTAATATACTAACATTTTCCCAAGATTAAATTTT
65 AAAGTCTAA-ATACCAA-ATTTTCCCAAGATTAAATTTT
* * * *
8071262 CAAAATTTTGAGAAAAAATTTGAAATATCAAATTTTCCTCTAAAGAAAATAATTTCAAA
1 ----ATTTTTAGGAAAAAGTTGAAATATCAAATTTTCCT-TAAAAAAAATAATTTCAAA
8071321 CATTTGAAGA
Statistics
Matches: 134, Mismatches: 16, Indels: 18
0.80 0.10 0.11
Matches are distributed among these distances:
101 6 0.04
102 13 0.10
103 65 0.49
104 1 0.01
106 45 0.34
107 4 0.03
ACGTcount: A:0.48, C:0.09, G:0.08, T:0.35
Consensus pattern (101 bp):
ATTTTTAGGAAAAAGTTGAAATATCAAATTTTCCTTAAAAAAAATAATTTCAAAAAATAAGGAAA
AAGTCTAAATACCAAATTTTCCCAAGATTAAATTTT
Found at i:8073714 original size:22 final size:22
Alignment explanation
Indices: 8073667--8073714 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
8073657 GTATGAACAC
*
8073667 AAATTAAAAAAGCTTGAATAGT
1 AAATTAAAAAAACTTGAATAGT
*
8073689 -AATTAAAACAAACTTGAA-ATT
1 AAATTAAAA-AAACTTGAATAGT
8073710 AAATT
1 AAATT
8073715 GCAAGAATGA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.56, C:0.06, G:0.08, T:0.29
Consensus pattern (22 bp):
AAATTAAAAAAACTTGAATAGT
Found at i:8075273 original size:18 final size:18
Alignment explanation
Indices: 8075239--8075276 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
8075229 AGTTCAATTG
8075239 TAAGCCTAAATTCCATTT
1 TAAGCCTAAATTCCATTT
*
8075257 TAAGACCTAACTT-CATTT
1 TAAG-CCTAAATTCCATTT
8075275 TA
1 TA
8075277 TTATGATTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 11 0.61
19 7 0.39
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.39
Consensus pattern (18 bp):
TAAGCCTAAATTCCATTT
Found at i:8078673 original size:37 final size:37
Alignment explanation
Indices: 8078590--8078673 Score: 114
Period size: 37 Copynumber: 2.3 Consensus size: 37
8078580 CCCTCCAGAA
* * * *
8078590 TAAATTTTATATGTAATGATATTAAGTAAATATATTT
1 TAAATTTTATATATAATAATATTAAATAAAGATATTT
*
8078627 TAAAATTTATATATAATAATATTAAATAAAGATATTT
1 TAAATTTTATATATAATAATATTAAATAAAGATATTT
*
8078664 TACATTTTAT
1 TAAATTTTAT
8078674 TTTTTATATT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.46, C:0.01, G:0.05, T:0.48
Consensus pattern (37 bp):
TAAATTTTATATATAATAATATTAAATAAAGATATTT
Found at i:8078893 original size:72 final size:71
Alignment explanation
Indices: 8078795--8079215 Score: 269
Period size: 73 Copynumber: 5.8 Consensus size: 71
8078785 AGACATTGTC
* * * *
8078795 TTTTCAACAAAGATCGCATGTTTTTATCTTTAAAATATCGTATTTGTTGAATTCTAAAAAATATT
1 TTTTCAATAAAGATCGTAT-TTTTTAT-TTTAAAATATCGTCTTTGTTGAATTTTAAAAAATATT
8078860 TTTTTATA
64 TTTTTATA
* * * * * **
8078868 TTTTCAATAAATATTGTATTTTTTATTTTAGAAATGTTGTCTTTTTTGAATTTTGGAAAATAATT
1 TTTTCAATAAAGATCGTATTTTTTATTTTA-AAATATCGTCTTTGTTGAATTTTAAAAAAT-ATT
*
8078933 TTTTCATA
64 TTTTTATA
* * * * * * * *
8078941 TTTTTAATAAAGAGCGCACTTTCTATCTTAAAA-ACGTCGTTTTTGTTGAATTTTGAAAAATATT
1 TTTTCAATAAAGATCGTATTTTTTATTTTAAAATA--TCGTCTTTGTTGAATTTTAAAAAATA-T
8079005 TTTTTTCATA
63 TTTTTT-ATA
** * * * * *
8079015 TTTTCAATAAAGA-CAAAGTTTTTATTTTAAAAATGTCATCTTTGTTGAATTTTGAAAAATACTT
1 TTTTCAATAAAGATCGTATTTTTTATTTT-AAAATATCGTCTTTGTTGAATTTTAAAAAATATTT
* *
8079079 CTTTA-C
65 TTTTATA
* * * ** * * * * *
8079085 GTTTCAACAAAAACTATTTTTTTTTATTTTAAAAACATCTTGTTTGTTGAATTTTAAAAAATAAT
1 TTTTCAATAAAGA-TCGTATTTTTTATTTT-AAAATATCGTCTTTGTTGAATTTTAAAAAATATT
*
8079150 TTTTCATA
64 TTTTTATA
* * * *
8079158 TTTTCAACAAAGA-C-TACTTTTTTTATCTTAAAA-ACTGCATCTTTGTTGAATTCTAAAA
1 TTTTCAATAAAGATCGTA--TTTTTTATTTTAAAATA-T-CGTCTTTGTTGAATTTTAAAA
8079216 TTCTTTTTCA
Statistics
Matches: 270, Mismatches: 63, Indels: 31
0.74 0.17 0.09
Matches are distributed among these distances:
70 12 0.04
71 10 0.04
72 110 0.41
73 119 0.44
74 19 0.07
ACGTcount: A:0.34, C:0.10, G:0.08, T:0.48
Consensus pattern (71 bp):
TTTTCAATAAAGATCGTATTTTTTATTTTAAAATATCGTCTTTGTTGAATTTTAAAAAATATTTT
TTTATA
Found at i:8080608 original size:16 final size:16
Alignment explanation
Indices: 8080560--8080613 Score: 58
Period size: 16 Copynumber: 3.3 Consensus size: 16
8080550 TAATTAATTG
8080560 GATTCGTGAATATTATA
1 GATTCGTGAATATTA-A
*
8080577 GATTCATGAATGATTAA
1 GATTCGTGAAT-ATTAA
8080594 G-TTCGTGAATAATTAA
1 GATTCGTGAAT-ATTAA
8080610 -ATTC
1 GATTC
8080614 ATTAAATTTG
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
16 16 0.50
17 12 0.38
18 4 0.12
ACGTcount: A:0.37, C:0.07, G:0.17, T:0.39
Consensus pattern (16 bp):
GATTCGTGAATATTAA
Found at i:8080829 original size:16 final size:16
Alignment explanation
Indices: 8080805--8080835 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8080795 AATTGATACC
8080805 TTAAATTCATAAATAA
1 TTAAATTCATAAATAA
*
8080821 TTAAGTTCATAAATA
1 TTAAATTCATAAATA
8080836 TTGAAATATA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (16 bp):
TTAAATTCATAAATAA
Found at i:8093130 original size:57 final size:57
Alignment explanation
Indices: 8093044--8093202 Score: 185
Period size: 57 Copynumber: 2.7 Consensus size: 57
8093034 CTAAAAAATT
* * * * *
8093044 AATTTTTCTTAAAAATAAAAATTTCAAAAAAAATATTTTGAGAAAAAGTTGAAAGTATC
1 AATTTTTCTTGAAGAT-CAAATTTCAAAAAAAA-ACTTTAAGAAAAAGTTGAAAGTATC
* *
8093103 AATTTTTCTTGAAGATCAAATTT-AAAAATAAAACTTTAAGGAAAAGTTGAAAGTATT
1 AATTTTTCTTGAAGATCAAATTTCAAAAA-AAAACTTTAAGAAAAAGTTGAAAGTATC
*
8093160 AATTTTCCTTGAAGATCAAATTTCAATAAAAAAATACTTTAAG
1 AATTTTTCTTGAAGATCAAATTTC-A-AAAAAAA-ACTTTAAG
8093203 CAAATTTCAA
Statistics
Matches: 87, Mismatches: 8, Indels: 9
0.84 0.08 0.09
Matches are distributed among these distances:
57 48 0.55
58 9 0.10
59 18 0.21
60 12 0.14
ACGTcount: A:0.49, C:0.07, G:0.09, T:0.35
Consensus pattern (57 bp):
AATTTTTCTTGAAGATCAAATTTCAAAAAAAAACTTTAAGAAAAAGTTGAAAGTATC
Found at i:8093217 original size:27 final size:27
Alignment explanation
Indices: 8093176--8093229 Score: 99
Period size: 27 Copynumber: 2.0 Consensus size: 27
8093166 CCTTGAAGAT
*
8093176 CAAATTTCAATAAAAAAATACTTTAAG
1 CAAATTTCAAGAAAAAAATACTTTAAG
8093203 CAAATTTCAAGAAAAAAATACTTTAAG
1 CAAATTTCAAGAAAAAAATACTTTAAG
8093230 GAAAAGTTGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.56, C:0.11, G:0.06, T:0.28
Consensus pattern (27 bp):
CAAATTTCAAGAAAAAAATACTTTAAG
Found at i:8093466 original size:20 final size:20
Alignment explanation
Indices: 8093441--8093480 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
8093431 AACGACGGAG
8093441 CCTCTGCAAGAGAAACAGTA
1 CCTCTGCAAGAGAAACAGTA
*
8093461 CCTCTGTAAGAGAAACAGTA
1 CCTCTGCAAGAGAAACAGTA
8093481 GTTTTTTTAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.40, C:0.23, G:0.20, T:0.17
Consensus pattern (20 bp):
CCTCTGCAAGAGAAACAGTA
Found at i:8097269 original size:9 final size:9
Alignment explanation
Indices: 8097257--8097321 Score: 53
Period size: 9 Copynumber: 7.4 Consensus size: 9
8097247 AAAAATGAAA
8097257 AAAAAAAAG
1 AAAAAAAAG
8097266 AAAAAAAAG
1 AAAAAAAAG
* *
8097275 -AGAAAATG
1 AAAAAAAAG
* *
8097283 AAAGAATA-
1 AAAAAAAAG
8097291 AAAAAAAAG
1 AAAAAAAAG
**
8097300 AAAATGAAG
1 AAAAAAAAG
*
8097309 AAAAAAAGG
1 AAAAAAAAG
8097318 AAAA
1 AAAA
8097322 CTCAAATTGA
Statistics
Matches: 41, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
8 12 0.29
9 29 0.71
ACGTcount: A:0.80, C:0.00, G:0.15, T:0.05
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:8097279 original size:23 final size:23
Alignment explanation
Indices: 8097247--8097313 Score: 64
Period size: 24 Copynumber: 2.8 Consensus size: 23
8097237 ATAATGGGAG
*
8097247 AAAAATGAAAA-AAAAAAAGAAA
1 AAAAAAGAAAATAAAAAAAGAAA
* * *
8097269 AAAAAGAGAAAATGAAAGAATAAA
1 AAAAA-AGAAAATAAAAAAAGAAA
8097293 AAAAAAGAAAATGAAGAAAAA
1 AAAAAAGAAAAT-AA-AAAAA
8097314 AAGGAAAACT
Statistics
Matches: 35, Mismatches: 6, Indels: 5
0.76 0.13 0.11
Matches are distributed among these distances:
22 5 0.14
23 12 0.34
24 14 0.40
25 4 0.11
ACGTcount: A:0.81, C:0.00, G:0.13, T:0.06
Consensus pattern (23 bp):
AAAAAAGAAAATAAAAAAAGAAA
Found at i:8097321 original size:23 final size:23
Alignment explanation
Indices: 8097266--8097315 Score: 77
Period size: 23 Copynumber: 2.2 Consensus size: 23
8097256 AAAAAAAAAG
8097266 AAAAAAAAGAGAAAATGAAAGAAT
1 AAAAAAAA-AGAAAATGAAAGAAT
8097290 AAAAAAAAAGAAAATG-AAGAA-
1 AAAAAAAAAGAAAATGAAAGAAT
8097311 AAAAA
1 AAAAA
8097316 GGAAAACTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
21 5 0.19
22 5 0.19
23 8 0.31
24 8 0.31
ACGTcount: A:0.80, C:0.00, G:0.14, T:0.06
Consensus pattern (23 bp):
AAAAAAAAAGAAAATGAAAGAAT
Found at i:8098426 original size:22 final size:21
Alignment explanation
Indices: 8098401--8098457 Score: 78
Period size: 21 Copynumber: 2.6 Consensus size: 21
8098391 ATACCCAGAG
8098401 TTTTTGAACTAGAATCCTAAAA
1 TTTTTGAA-TAGAATCCTAAAA
* *
8098423 TTTTTGGATAGAATTCTAAAA
1 TTTTTGAATAGAATCCTAAAA
8098444 TTTTTGAATGAGAA
1 TTTTTGAAT-AGAA
8098458 CCTTTGAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
21 20 0.65
22 11 0.35
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (21 bp):
TTTTTGAATAGAATCCTAAAA
Found at i:8098606 original size:35 final size:35
Alignment explanation
Indices: 8098558--8098683 Score: 121
Period size: 35 Copynumber: 3.6 Consensus size: 35
8098548 AAACTTTGTA
*
8098558 AATCTCCAATTCTTGTGAATCTAAAAGTTTTTACG
1 AATCTTCAATTCTTGTGAATCTAAAAGTTTTTACG
* * * *
8098593 AATCTTCATTTCTTGCGAATCTAAAAG-TCTTGCG
1 AATCTTCAATTCTTGTGAATCTAAAAGTTTTTACG
* * * *
8098627 AATC-TCTAATTCTTGTGAATTTGAAAGTTTTTGCT
1 AATCTTC-AATTCTTGTGAATCTAAAAGTTTTTACG
* * *
8098662 AATCTCCAATTATTGCGAATCT
1 AATCTTCAATTCTTGTGAATCT
8098684 TCAATTCTTC
Statistics
Matches: 73, Mismatches: 15, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
33 2 0.03
34 25 0.34
35 45 0.62
36 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.13, T:0.41
Consensus pattern (35 bp):
AATCTTCAATTCTTGTGAATCTAAAAGTTTTTACG
Done.