Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 39 of 195
Found at i:8226517 original size:2 final size:2
Alignment explanation
Indices: 8226512--8226546 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
8226502 AAAAAAAAAA
*
8226512 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AG AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8226547 GACATAGATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.00, G:0.03, T:0.46
Consensus pattern (2 bp):
AT
Found at i:8228935 original size:42 final size:42
Alignment explanation
Indices: 8228872--8228951 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 42
8228862 CAAAACAATT
8228872 TATATTTTATAGATTTCGATTTATCCCAATCCAATAAAGGAG
1 TATATTTTATAGATTTCGATTTATCCCAATCCAATAAAGGAG
* * * *
8228914 TATATTTTATGGATTTTGATTTGTTCCAATCCAATAAA
1 TATATTTTATAGATTTCGATTTATCCCAATCCAATAAA
8228952 AGAGCTTTTA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 34 1.00
ACGTcount: A:0.34, C:0.12, G:0.11, T:0.42
Consensus pattern (42 bp):
TATATTTTATAGATTTCGATTTATCCCAATCCAATAAAGGAG
Found at i:8229010 original size:13 final size:13
Alignment explanation
Indices: 8228994--8229019 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
8228984 TCCTTTTTTT
8228994 TTTGTAAGATAAA
1 TTTGTAAGATAAA
8229007 TTTGTAAGATAAA
1 TTTGTAAGATAAA
8229020 ATCAATGTAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.15, T:0.38
Consensus pattern (13 bp):
TTTGTAAGATAAA
Found at i:8231565 original size:3 final size:3
Alignment explanation
Indices: 8231557--8231595 Score: 78
Period size: 3 Copynumber: 13.0 Consensus size: 3
8231547 GACCTTTTAA
8231557 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8231596 GAAATTTTGA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 36 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8231907 original size:3 final size:3
Alignment explanation
Indices: 8231899--8231931 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
8231889 ATTTTTTCAA
8231899 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8231932 TACTTTGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:8234167 original size:49 final size:49
Alignment explanation
Indices: 8234094--8234192 Score: 153
Period size: 49 Copynumber: 2.0 Consensus size: 49
8234084 TTAAAACCTA
* * *
8234094 AGCAATAAACTATGTAGGGCAACAAATTAGAGGTTTTGCCCCATACCCC
1 AGCAATAAACTATATAGGGCAACAAATCAAAGGTTTTGCCCCATACCCC
* *
8234143 AGCAATAAACTATATGGGGTAACAAATCAAAGGTTTTGCCCCATACCCC
1 AGCAATAAACTATATAGGGCAACAAATCAAAGGTTTTGCCCCATACCCC
8234192 A
1 A
8234193 CATTAATATA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
49 45 1.00
ACGTcount: A:0.36, C:0.24, G:0.17, T:0.22
Consensus pattern (49 bp):
AGCAATAAACTATATAGGGCAACAAATCAAAGGTTTTGCCCCATACCCC
Found at i:8237027 original size:30 final size:29
Alignment explanation
Indices: 8236993--8237062 Score: 81
Period size: 30 Copynumber: 2.4 Consensus size: 29
8236983 TATTTATTTA
* *
8236993 ATTTAATTTATATA-TTATATTAATATTATT
1 ATTTAATATATATATTTA-ATAAATATTA-T
*
8237023 ATTTAATATATTTATTTAATAAATATTAT
1 ATTTAATATATATATTTAATAAATATTAT
8237052 ATTT-ATATATA
1 ATTTAATATATA
8237063 ATTAAGATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
28 6 0.17
29 5 0.14
30 21 0.60
31 3 0.09
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (29 bp):
ATTTAATATATATATTTAATAAATATTAT
Found at i:8237036 original size:39 final size:40
Alignment explanation
Indices: 8236979--8237059 Score: 96
Period size: 39 Copynumber: 2.0 Consensus size: 40
8236969 AAAATATTTT
*
8236979 TTATTATTTATTTAATTTAATTT-AT-ATATTATATTAATA
1 TTATTATTTATATAATTT-ATTTAATAATATTATATTAATA
*
8237018 TTATTATTTA-ATATATTTATTTAATAAATATTATATTTATA
1 TTATTATTTATATA-ATTTATTTAAT-AATATTATATTAATA
8237059 T
1 T
8237060 ATAATTAAGA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
38 6 0.17
39 16 0.44
41 14 0.39
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (40 bp):
TTATTATTTATATAATTTATTTAATAATATTATATTAATA
Found at i:8237061 original size:13 final size:13
Alignment explanation
Indices: 8236978--8237061 Score: 67
Period size: 13 Copynumber: 6.7 Consensus size: 13
8236968 AAAAATATTT
8236978 TTTAT-TATT-TA
1 TTTATATATTATA
8236989 TTTA-AT-TTA-A
1 TTTATATATTATA
8236999 TTTATATATTATA
1 TTTATATATTATA
8237012 -TTA-ATATTATTA
1 TTTATATATTA-TA
8237024 TTTAATATATT-TA
1 TTT-ATATATTATA
8237037 TTTAATAAATATTATA
1 TTT-AT--ATATTATA
8237053 TTTATATAT
1 TTTATATAT
8237062 AATTAAGATG
Statistics
Matches: 61, Mismatches: 0, Indels: 22
0.73 0.00 0.27
Matches are distributed among these distances:
10 7 0.11
11 13 0.21
12 8 0.13
13 15 0.25
14 1 0.02
15 12 0.20
16 5 0.08
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (13 bp):
TTTATATATTATA
Found at i:8244341 original size:9 final size:9
Alignment explanation
Indices: 8244329--8244358 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
8244319 ATTTTTTAGC
8244329 TTTTATTTT
1 TTTTATTTT
8244338 TTTTATTTT
1 TTTTATTTT
8244347 TTTTATTTT
1 TTTTATTTT
8244356 TTT
1 TTT
8244359 GTTTAATTAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.10, C:0.00, G:0.00, T:0.90
Consensus pattern (9 bp):
TTTTATTTT
Found at i:8244355 original size:23 final size:23
Alignment explanation
Indices: 8244300--8244355 Score: 58
Period size: 23 Copynumber: 2.4 Consensus size: 23
8244290 ACCACTGACC
*
8244300 TTTTTGTTTTATCATTTTTATTT
1 TTTTTATTTTATCATTTTTATTT
*** **
8244323 TTTAGCTTTTATTTTTTTTATTT
1 TTTTTATTTTATCATTTTTATTT
8244346 TTTTTATTTT
1 TTTTTATTTT
8244356 TTTGTTTAAT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.12, C:0.04, G:0.04, T:0.80
Consensus pattern (23 bp):
TTTTTATTTTATCATTTTTATTT
Found at i:8244738 original size:148 final size:147
Alignment explanation
Indices: 8244466--8244766 Score: 476
Period size: 148 Copynumber: 2.0 Consensus size: 147
8244456 TCAGGCTTGG
* * *
8244466 TGTAGACACCTAATTGGATCCAGGCCTAGATCAATTGGGCTTGGCCCAAATGGGTAAGGCCCAAT
1 TGTAGACACCCAATTGGATCCAGGCCCAGATCAATTGGGCCTGGCCCAAATGGGTAAGGCCCAAT
8244531 TCAATTTTTATCCTGTATTATTTTTTTTTGTATTTTATTATTTATTATTATTATGTATTAATATA
66 TCAATTTTTATCCTGTATTATTTTTTTTTGTATTTTATTA-TTATTATTATTATGTATTAATATA
8244596 TGTATATCTGTATTTAGC
130 TGTATATCTGTATTTAGC
* *
8244614 TGTAGACACCCAATTGGGTCCAGGCCCAGATCAATTGGGCCTGGCCCAAATGGGTAAGGTCCAAT
1 TGTAGACACCCAATTGGATCCAGGCCCAGATCAATTGGGCCTGGCCCAAATGGGTAAGGCCCAAT
8244679 TCAATTTTTATCCTGTATTATTTTTTTTCTTTTGTATTTTATTATTTATTATTATTATTATGTAT
66 TCAATTTTTATCCTGTATTA---TTTTT-TTTTGTA--TT-TTA-TTATTATTATTATTATGTAT
8244744 TAATATATGTATATCTGTATTTA
123 TAATATATGTATATCTGTATTTA
8244767 TTTATTTATT
Statistics
Matches: 140, Mismatches: 5, Indels: 9
0.91 0.03 0.06
Matches are distributed among these distances:
148 80 0.57
151 5 0.04
152 7 0.05
154 2 0.01
155 43 0.31
156 3 0.02
ACGTcount: A:0.26, C:0.14, G:0.15, T:0.45
Consensus pattern (147 bp):
TGTAGACACCCAATTGGATCCAGGCCCAGATCAATTGGGCCTGGCCCAAATGGGTAAGGCCCAAT
TCAATTTTTATCCTGTATTATTTTTTTTTGTATTTTATTATTATTATTATTATGTATTAATATAT
GTATATCTGTATTTAGC
Found at i:8244821 original size:25 final size:26
Alignment explanation
Indices: 8244764--8244854 Score: 82
Period size: 25 Copynumber: 3.6 Consensus size: 26
8244754 ATATCTGTAT
* *
8244764 TTATTTATTTATTTTATTTAGAATAGA
1 TTATATATTTATTTTATTTA-TATAGA
*
8244791 TT-TATATGTATTTTATTTATATAG-
1 TTATATATTTATTTTATTTATATAGA
*
8244815 TTATATATTTATTATTA-TTATAT-TA
1 TTATATATTTATT-TTATTTATATAGA
* *
8244840 TTATTTTTTTATTTT
1 TTATATATTTATTTT
8244855 GTAATATATT
Statistics
Matches: 54, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
24 4 0.07
25 30 0.56
26 18 0.33
27 2 0.04
ACGTcount: A:0.30, C:0.00, G:0.04, T:0.66
Consensus pattern (26 bp):
TTATATATTTATTTTATTTATATAGA
Found at i:8244944 original size:13 final size:14
Alignment explanation
Indices: 8244917--8244944 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8244907 TATCTGTTAA
8244917 TTTTATCTGATTTT
1 TTTTATCTGATTTT
8244931 TTTTATCTGATTTT
1 TTTTATCTGATTTT
8244945 ATCGATTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.07, G:0.07, T:0.71
Consensus pattern (14 bp):
TTTTATCTGATTTT
Found at i:8245456 original size:19 final size:20
Alignment explanation
Indices: 8245432--8245470 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
8245422 TCCGGCCAAC
*
8245432 TTTCGATGA-AATTTCCAGA
1 TTTCGACGATAATTTCCAGA
*
8245451 TTTCGACGATATTTTCCAGA
1 TTTCGACGATAATTTCCAGA
8245471 ATCCAGTGAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.28, C:0.18, G:0.15, T:0.38
Consensus pattern (20 bp):
TTTCGACGATAATTTCCAGA
Found at i:8245848 original size:18 final size:16
Alignment explanation
Indices: 8245826--8245962 Score: 73
Period size: 17 Copynumber: 8.2 Consensus size: 16
8245816 TTTTTTTGAA
8245826 TTTTTTTTATTTTCATT
1 TTTTTTTTATTTT-ATT
8245843 TATTTTTTTATTTTATT
1 T-TTTTTTTATTTTATT
* **
8245860 TTTTATTTATTAGATTAGG
1 TTTTTTTTATT---TTATT
* * * *
8245879 TTTATTTAATATTCTT
1 TTTTTTTTATTTTATT
*
8245895 TTTATCTTTATTTTATT
1 TTT-TTTTTATTTTATT
*
8245912 TTTATTTTTGTTTTACTT
1 TTT-TTTTTATTTTA-TT
*
8245930 TTCTTTATT-TTTTA-T
1 TT-TTTTTTATTTTATT
*
8245945 TTTTATTTA-TTTATT
1 TTTTTTTTATTTTATT
8245960 TTT
1 TTT
8245963 ATTATTCTAT
Statistics
Matches: 91, Mismatches: 20, Indels: 20
0.69 0.15 0.15
Matches are distributed among these distances:
14 8 0.09
15 7 0.08
16 14 0.15
17 31 0.34
18 20 0.22
19 11 0.12
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.76
Consensus pattern (16 bp):
TTTTTTTTATTTTATT
Found at i:8245850 original size:12 final size:11
Alignment explanation
Indices: 8245826--8245962 Score: 63
Period size: 11 Copynumber: 12.4 Consensus size: 11
8245816 TTTTTTTGAA
8245826 TTTTT-TTTA-
1 TTTTTATTTAT
*
8245835 TTTTCATTTATT
1 TTTTTATTTA-T
8245847 TTTTTATTTTAT
1 TTTTTA-TTTAT
8245859 TTTTTATTTAT
1 TTTTTATTTAT
**
8245870 TAGATTAGGTTTAT
1 T-TTTTA--TTTAT
**
8245884 TTAATATTCT-T
1 TTTTTATT-TAT
* *
8245895 TTTATCTTTAT
1 TTTTTATTTAT
8245906 TTTATT-TTTAT
1 TTT-TTATTTAT
8245917 TTTTGT-TTTA-
1 TTTT-TATTTAT
* *
8245927 CTTTTCTTTAT
1 TTTTTATTTAT
8245938 TTTTTATTT-T
1 TTTTTATTTAT
*
8245948 TATTTATTTAT
1 TTTTTATTTAT
8245959 TTTT
1 TTTT
8245963 ATTATTCTAT
Statistics
Matches: 100, Mismatches: 14, Indels: 26
0.71 0.10 0.19
Matches are distributed among these distances:
9 5 0.05
10 22 0.22
11 43 0.43
12 17 0.17
13 7 0.07
14 6 0.06
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.76
Consensus pattern (11 bp):
TTTTTATTTAT
Found at i:8245914 original size:6 final size:6
Alignment explanation
Indices: 8245893--8245975 Score: 64
Period size: 6 Copynumber: 13.7 Consensus size: 6
8245883 TTTAATATTC
* * * * *
8245893 TTTTTA TCTTTA -TTTTA TTTTTA TTTTT- GTTTTA CTTTTC TTTAT-
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
8245938 TTTTTA TTTTTA TTTATTTA TTTTTA TTATTCTA TTTT
1 TTTTTA TTTTTA -TT-TTTA TTTTTA TT-TT-TA TTTT
8245976 CTTTAAATAA
Statistics
Matches: 62, Mismatches: 8, Indels: 13
0.75 0.10 0.16
Matches are distributed among these distances:
5 12 0.19
6 34 0.55
7 8 0.13
8 8 0.13
ACGTcount: A:0.16, C:0.05, G:0.01, T:0.78
Consensus pattern (6 bp):
TTTTTA
Found at i:8245967 original size:17 final size:16
Alignment explanation
Indices: 8245827--8245974 Score: 62
Period size: 18 Copynumber: 8.9 Consensus size: 16
8245817 TTTTTTGAAT
8245827 TTTTTTTATTTTCATTTA
1 TTTTTTTA-TTT-ATTTA
8245845 TTTTTTTA--T-TTTA
1 TTTTTTTATTTATTTA
*
8245858 -TTTTTTATTTATTAGA
1 TTTTTTTATTTATT-TA
** *
8245874 TTAGGTTTATTTA-ATA
1 TT-TTTTTATTTATTTA
8245890 TTCTTTTTATCTTTATTTTA
1 TT-TTTTTA--TTTA-TTTA
*
8245910 TTTTTATT-TTTGTTTTA
1 TTTTT-TTATTT-ATTTA
8245927 CTTTTCTTTATTT-TTTA
1 -TTTT-TTTATTTATTTA
8245944 --TTTTTATTTATTTA
1 TTTTTTTATTTATTTA
8245958 TTTTTATTATTCTATTT
1 TTTTT-TTATT-TATTT
8245975 TCTTTAAATA
Statistics
Matches: 100, Mismatches: 10, Indels: 40
0.67 0.07 0.27
Matches are distributed among these distances:
12 7 0.07
13 11 0.11
14 7 0.07
15 3 0.03
16 11 0.11
17 17 0.17
18 31 0.31
19 7 0.07
20 6 0.06
ACGTcount: A:0.18, C:0.04, G:0.03, T:0.75
Consensus pattern (16 bp):
TTTTTTTATTTATTTA
Found at i:8246212 original size:57 final size:57
Alignment explanation
Indices: 8246002--8246275 Score: 386
Period size: 58 Copynumber: 4.7 Consensus size: 57
8245992 AAATTGTCAA
8246002 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
** * * ** *
8246059 AAAAAGGGATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCTTTGGAAATCAAAGTTTC
1 AAAAA-ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTTTC
* *
8246118 AAAAAATATATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAAAAATAAATTTTC
1 -AAAAA-ATAT-TTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
8246179 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
1 AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
* *
8246236 AAAAAATATTTTTTGGGAAAAAGTTGAAAGTATTAATTTT
1 AAAAAATATTTTTAGGG-AAAAGTTGAAAGTATCAATTTT
8246276 TCCTACACAA
Statistics
Matches: 190, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
57 62 0.33
58 64 0.34
59 11 0.06
60 12 0.06
61 11 0.06
62 30 0.16
ACGTcount: A:0.45, C:0.06, G:0.12, T:0.37
Consensus pattern (57 bp):
AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTTC
Found at i:8259856 original size:9 final size:9
Alignment explanation
Indices: 8259842--8259919 Score: 72
Period size: 8 Copynumber: 8.7 Consensus size: 9
8259832 CTATGCTTGA
8259842 AAAAAAAAT
1 AAAAAAAAT
8259851 -AAAAAAAT
1 AAAAAAAAT
*
8259859 GAGAAAAAAT
1 -AAAAAAAAT
8259869 -AAAAAAAT
1 AAAAAAAAT
**
8259877 GAAAAATGAT
1 -AAAAAAAAT
8259887 GAAAAAAAA-
1 -AAAAAAAAT
*
8259896 CAAAAAAAT
1 AAAAAAAAT
8259905 AAAAAAAAT
1 AAAAAAAAT
8259914 AAAAAA
1 AAAAAA
8259920 GTGATTGAAA
Statistics
Matches: 56, Mismatches: 8, Indels: 10
0.76 0.11 0.14
Matches are distributed among these distances:
8 22 0.39
9 14 0.25
10 20 0.36
ACGTcount: A:0.82, C:0.01, G:0.06, T:0.10
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:8259867 original size:18 final size:17
Alignment explanation
Indices: 8259843--8259911 Score: 84
Period size: 18 Copynumber: 3.9 Consensus size: 17
8259833 TATGCTTGAA
8259843 AAAAAAATAAAAAAATG
1 AAAAAAATAAAAAAATG
8259860 AGAAAAAATAAAAAAATG
1 A-AAAAAATAAAAAAATG
* **
8259878 AAAAATGATGAAAAAAAAC
1 AAAAA-AAT-AAAAAAATG
8259897 AAAAAAATAAAAAAA
1 AAAAAAATAAAAAAA
8259912 ATAAAAAAGT
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
17 12 0.27
18 21 0.47
19 12 0.27
ACGTcount: A:0.81, C:0.01, G:0.07, T:0.10
Consensus pattern (17 bp):
AAAAAAATAAAAAAATG
Found at i:8259912 original size:18 final size:18
Alignment explanation
Indices: 8259841--8259919 Score: 79
Period size: 18 Copynumber: 4.3 Consensus size: 18
8259831 ACTATGCTTG
8259841 AAAAAAAAATAAAAAAAT
1 AAAAAAAAATAAAAAAAT
* *
8259859 GAGAAAAAATAAAAAAAT
1 AAAAAAAAATAAAAAAAT
* **
8259877 GAAAAATGATGAAAAAAA-
1 AAAAAAAAAT-AAAAAAAT
*
8259895 ACAAAAAAATAAAAAAAAT
1 AAAAAAAAAT-AAAAAAAT
8259914 AAAAAA
1 AAAAAA
8259920 GTGATTGAAA
Statistics
Matches: 48, Mismatches: 11, Indels: 3
0.77 0.18 0.05
Matches are distributed among these distances:
18 36 0.75
19 12 0.25
ACGTcount: A:0.82, C:0.01, G:0.06, T:0.10
Consensus pattern (18 bp):
AAAAAAAAATAAAAAAAT
Found at i:8261024 original size:41 final size:41
Alignment explanation
Indices: 8260948--8261203 Score: 350
Period size: 41 Copynumber: 6.1 Consensus size: 41
8260938 ATGATTGTCA
* *
8260948 AGGAGCAATTTACTTTTCAAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
8260990 AGGAGCAATTTACTTTCCAAAGTCGTGGTACCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
8261031 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
** * *
8261072 AGGAATAATTTACTTTTTCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * *
8261114 AGGAGCAATTTATTTTCAAAAGTCGTGGTGCCTCTGTTTAA
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * *
8261155 AGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
8261198 AGGAGC
1 AGGAGC
8261204 TTTGGAAAAA
Statistics
Matches: 191, Mismatches: 20, Indels: 5
0.88 0.09 0.02
Matches are distributed among these distances:
41 111 0.58
42 54 0.28
43 26 0.14
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:8261107 original size:83 final size:84
Alignment explanation
Indices: 8260948--8261203 Score: 385
Period size: 83 Copynumber: 3.1 Consensus size: 84
8260938 ATGATTGTCA
* *
8260948 AGGAGCAATTTACTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTAC-TTTCCAAAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAG
*
8261012 TCGTGGTACCTCTGTTTAG
66 TCGTGGTGCCTCTGTTTAG
**
8261031 AGGAGCAATTTACTTTTC-AAAGTCGTGGTGCCTCTGTTTAGAGGAATAATTTACTTTTTCAAAG
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAG
*
8261095 TCATGGTGCCTCTGTTTAG
66 TCGTGGTGCCTCTGTTTAG
*
8261114 AGGAGCAATTTA-TTTTCAAAAGTCGTGGTGCCTCTGTTTAAAGGAGCAATTTA-TGTTTCTCAA
1 AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACT-TTT-TCAA
* *
8261177 AGTCGTTGAGCCTCTGTTTAG
64 AGTCGTGGTGCCTCTGTTTAG
8261198 AGGAGC
1 AGGAGC
8261204 TTTGGAAAAA
Statistics
Matches: 157, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
82 39 0.25
83 90 0.57
84 28 0.18
ACGTcount: A:0.25, C:0.16, G:0.23, T:0.36
Consensus pattern (84 bp):
AGGAGCAATTTACTTTTCAAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAG
TCGTGGTGCCTCTGTTTAG
Found at i:8261138 original size:124 final size:126
Alignment explanation
Indices: 8260954--8261201 Score: 385
Period size: 124 Copynumber: 2.0 Consensus size: 126
8260944 GTCAAGGAGC
** *
8260954 AATTTACTTTTCAAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGT
1 AATTTACTTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGT
* *
8261019 ACCTCTGTTTAGAGGAGCAATTTA-CTTT-TCAAAGTCGTGGTGCCTCTGTTTAGAGGAAT
66 ACCTCTGTTTAAAGGAGCAATTTATCTTTCTCAAAGTCGTGGAGCCTCTGTTTAGAGGAAT
*
8261078 AATTTACTTTTTC-AAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTATTTTCAAAAGTCGTGG
1 AATTTAC-TTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGG
* * *
8261142 TGCCTCTGTTTAAAGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGGA
65 TACCTCTGTTTAAAGGAGCAATTTATCTTTCTCAAAGTCGTGGAGCCTCTGTTTAGAGGA
8261202 GCTTTGGAAA
Statistics
Matches: 112, Mismatches: 9, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
124 77 0.69
125 8 0.07
126 27 0.24
ACGTcount: A:0.25, C:0.16, G:0.22, T:0.38
Consensus pattern (126 bp):
AATTTACTTTTCAAAAGTCATGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCAAAAGTCGTGGT
ACCTCTGTTTAAAGGAGCAATTTATCTTTCTCAAAGTCGTGGAGCCTCTGTTTAGAGGAAT
Found at i:8261526 original size:25 final size:25
Alignment explanation
Indices: 8261471--8261542 Score: 71
Period size: 25 Copynumber: 2.9 Consensus size: 25
8261461 GTATATCTGT
*
8261471 ATTTAT-T-TATTTTATTTAGAATAG
1 ATTTATATGTATTTTATTTA-TATAG
8261495 ATTTATATGTATTTTATTTATATAG
1 ATTTATATGTATTTTATTTATATAG
*
8261520 -TTATATATTTATTATTA-TTATAT
1 ATT-TATATGTATT-TTATTTATAT
8261543 TTTTTTTTGT
Statistics
Matches: 42, Mismatches: 2, Indels: 7
0.82 0.04 0.14
Matches are distributed among these distances:
24 8 0.19
25 20 0.48
26 14 0.33
ACGTcount: A:0.33, C:0.00, G:0.06, T:0.61
Consensus pattern (25 bp):
ATTTATATGTATTTTATTTATATAG
Found at i:8261543 original size:15 final size:15
Alignment explanation
Indices: 8261495--8261544 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
8261485 TTTAGAATAG
*
8261495 ATTTA-TATGTATTTT
1 ATTTATTAT-TATTAT
8261510 ATTTATATAGTTA-TAT
1 ATTTAT-TA-TTATTAT
8261526 ATTTATTATTATTAT
1 ATTTATTATTATTAT
8261541 ATTT
1 ATTT
8261545 TTTTTTGTAA
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
14 3 0.10
15 14 0.47
16 8 0.27
17 4 0.13
18 1 0.03
ACGTcount: A:0.32, C:0.00, G:0.04, T:0.64
Consensus pattern (15 bp):
ATTTATTATTATTAT
Found at i:8261638 original size:13 final size:13
Alignment explanation
Indices: 8261613--8261639 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
8261603 TATCTGTTAA
8261613 TTTTATCTGATTT
1 TTTTATCTGATTT
8261626 TTTTATCTGATTT
1 TTTTATCTGATTT
8261639 T
1 T
8261640 ACCGATTGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.15, C:0.07, G:0.07, T:0.70
Consensus pattern (13 bp):
TTTTATCTGATTT
Found at i:8262623 original size:22 final size:21
Alignment explanation
Indices: 8262598--8262663 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 21
8262588 TCTTTTTATC
8262598 TTTATTTTATTTTTATTTTTGT
1 TTTATTTTATTTTTATTTTT-T
* *
8262620 TTTACTTT-TCTTTATTTTTT
1 TTTATTTTATTTTTATTTTTT
*
8262640 ATT-TTTTATTATTCTATTTTTT
1 TTTATTTTATT-TT-TATTTTTT
8262662 TT
1 TT
8262664 AAATAAAAAT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
19 3 0.09
20 4 0.11
21 12 0.34
22 16 0.46
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (21 bp):
TTTATTTTATTTTTATTTTTT
Found at i:8262639 original size:11 final size:10
Alignment explanation
Indices: 8262598--8262663 Score: 53
Period size: 11 Copynumber: 6.2 Consensus size: 10
8262588 TCTTTTTATC
8262598 TTTATTTTATT
1 TTTATTTT-TT
8262609 TTTATTTTTGT
1 TTTATTTTT-T
* *
8262620 TTTACTTTTC
1 TTTATTTTTT
8262630 TTTATTTTTT
1 TTTATTTTTT
8262640 ATTT-TTTATTAT
1 -TTTATTT-TT-T
*
8262652 TCTATTTTTT
1 TTTATTTTTT
8262662 TT
1 TT
8262664 AAATAAAAAT
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
10 14 0.32
11 26 0.59
12 4 0.09
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:8262645 original size:17 final size:17
Alignment explanation
Indices: 8262590--8262645 Score: 60
Period size: 17 Copynumber: 3.3 Consensus size: 17
8262580 TTTAATATTC
* *
8262590 TTTTTATCTTTATTTTA
1 TTTTTATTTTTGTTTTA
8262607 TTTTTATTTTTGTTTTA
1 TTTTTATTTTTGTTTTA
* *
8262624 CTTTTCTTTATT-TTTTA
1 TTTTTATTT-TTGTTTTA
8262641 TTTTT
1 TTTTT
8262646 TATTATTCTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
17 31 0.94
18 2 0.06
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.80
Consensus pattern (17 bp):
TTTTTATTTTTGTTTTA
Found at i:8262651 original size:17 final size:18
Alignment explanation
Indices: 8262602--8262652 Score: 54
Period size: 17 Copynumber: 2.9 Consensus size: 18
8262592 TTTATCTTTA
*
8262602 TTTTA-TTTTTATTTTTG
1 TTTTATTTTTTATTATTG
*
8262619 TTTTACTTTTCT-TTATT-
1 TTTTA-TTTTTTATTATTG
8262636 TTTTATTTTTTATTATT
1 TTTTATTTTTTATTATT
8262653 CTATTTTTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
16 5 0.18
17 15 0.54
18 4 0.14
19 4 0.14
ACGTcount: A:0.14, C:0.04, G:0.02, T:0.80
Consensus pattern (18 bp):
TTTTATTTTTTATTATTG
Found at i:8262654 original size:24 final size:24
Alignment explanation
Indices: 8262605--8262664 Score: 63
Period size: 24 Copynumber: 2.5 Consensus size: 24
8262595 ATCTTTATTT
8262605 TATTTTTATTT-TTGTTTTACTTTTC
1 TATTTTT-TTTATT-TTTTACTTTTC
8262630 T-TTATTTTTTATTTTTTA-TTATTC
1 TATT-TTTTTTATTTTTTACTT-TTC
8262654 TATTTTTTTTA
1 TATTTTTTTTA
8262665 AATAAAAATC
Statistics
Matches: 31, Mismatches: 0, Indels: 9
0.77 0.00 0.22
Matches are distributed among these distances:
23 2 0.06
24 21 0.68
25 8 0.26
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (24 bp):
TATTTTTTTTATTTTTTACTTTTC
Found at i:8262738 original size:58 final size:59
Alignment explanation
Indices: 8262667--8262901 Score: 332
Period size: 59 Copynumber: 4.0 Consensus size: 59
8262657 TTTTTTTAAA
**
8262667 TAAAAATCAAAATTTCCAAAAAAATATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT--AAATTTCCAAAAAAGGATTTTTAGAGGAAAAGTTGAAAGTATCAATTTTCCT
* * * * *
8262727 TAGAAATAAATTTTCAAAAAGGGATTTTTTGAGGAAAAGTTGAAAATATCAATTTTCCT
1 TAAAAATAAATTTCCAAAAAAGGATTTTTAGAGGAAAAGTTGAAAGTATCAATTTTCCT
*
8262786 TAAAAATAAATTTTCAAAAAAGGATTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAATTTCCAAAAAAGGATTTTTAGAGGAAAAGTTGAAAGTATCAATTTTCCT
**
8262844 TAAAAATCAAATTTCCAAAAAATTATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCC
1 TAAAAAT-AAATTTCCAAAAAAGGATTTTTAGAGGAAAAGTTGAAAGTATCAATTTTCC
8262902 CTACACAAGA
Statistics
Matches: 159, Mismatches: 13, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
58 54 0.34
59 98 0.62
60 7 0.04
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (59 bp):
TAAAAATAAATTTCCAAAAAAGGATTTTTAGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:8262804 original size:117 final size:118
Alignment explanation
Indices: 8262667--8262901 Score: 332
Period size: 117 Copynumber: 2.0 Consensus size: 118
8262657 TTTTTTTAAA
* *
8262667 TAAAAATCAAAATTTCCAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAGA
1 TAAAAAT-AAAATTTCCAAAAAAAGATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAAA
* * *
8262731 AAT-AAATTTTCAAAAAGGGATTTTTTGAGGAAAAGTTGAAAATATCAATTTTCCT
64 AATCAAATTTCCAAAAAAGGATTTTTAG-GGAAAAGTTGAAAATATCAATTTTCCT
* *
8262786 TAAAAAT-AAATTTTCAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
1 TAAAAATAAAATTTCCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
** *
8262850 TCAAATTTCCAAAAAATTATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
66 TCAAATTTCCAAAAAAGGATTTTTAGGGAAAAGTTGAAAATATCAATTTTCC
8262902 CTACACAAGA
Statistics
Matches: 104, Mismatches: 10, Indels: 6
0.87 0.08 0.05
Matches are distributed among these distances:
117 77 0.74
118 20 0.19
119 7 0.07
ACGTcount: A:0.45, C:0.09, G:0.12, T:0.34
Consensus pattern (118 bp):
TAAAAATAAAATTTCCAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAA
TCAAATTTCCAAAAAAGGATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCT
Found at i:8263746 original size:49 final size:49
Alignment explanation
Indices: 8263675--8264646 Score: 758
Period size: 49 Copynumber: 19.3 Consensus size: 49
8263665 GTAGAGGTTT
* * *
8263675 AACAACCTTTTAAAATTCTTATCTTGAAAAAGCTCCTCTAAGTAGAGGCTA
1 AACAA-CTTTAAAAATT-TTATCTTGAAAAAGCTCCTCTAAGTAAAGGCTC
* * * * *
8263726 AACAATTTTAAAAATTTTATCTTGAAAAATCTCTTCTAAGTAGAGGTTC
1 AACAACTTTAAAAATTTTATCTTGAAAAAGCTCCTCTAAGTAAAGGCTC
* * * *
8263775 AACAATTTTAAAAATTTCATCTTGAAAAAAGCCCCTCTAAGTAAAGGTTC
1 AACAACTTTAAAAATTTTATCTTG-AAAAAGCTCCTCTAAGTAAAGGCTC
* ** *
8263825 AACGACTTTAAAAATTTTATCTTCTTGAAAAAATATCCTCTAAGCAAAGGCTC
1 AACAACTTTAAAAATTTTA---TCTTG-AAAAAGCTCCTCTAAGTAAAGGCTC
* * * * *
8263878 AATAACTTTAAAAATTTCATCTTGAAAAAGCTTCTCTTAGTAGAGGCTC
1 AACAACTTTAAAAATTTTATCTTGAAAAAGCTCCTCTAAGTAAAGGCTC
** * * * *
8263927 AACATA-TTTAAAAAAAATTATTTTGAAAAAGCTTCTCTAAGCAAAGGCTT
1 AACA-ACTTT-AAAAATTTTATCTTGAAAAAGCTCCTCTAAGTAAAGGCTC
* * * **
8263977 AACAACTTTAAAAAATTTTCATTTTGGAAAAGACTCATCTTGGTAGAA-GCTC
1 AACAACTTT-AAAAATTTT-ATCTTGAAAAAG-CTCCTCTAAGTA-AAGGCTC
* *
8264029 AACAACTTT-AAAATTTTATCTTGAAAAAAACTCCTCTAAGCAAAGGCTC
1 AACAACTTTAAAAATTTTATCTTG-AAAAAGCTCCTCTAAGTAAAGGCTC
* * * *
8264078 AACAACTTTAAAAATTCTCATCTTGAAAAAAGCTCTTCTAAGCAAAAGCTC
1 AACAACTTTAAAAATT-TTATCTTG-AAAAAGCTCCTCTAAGTAAAGGCTC
* * * **
8264129 AATAACTTTAAAAATTTTATCTTGAAAAAAAAAGCTTCTCTGAA-CAAAAACTC
1 AACAACTTTAAAAATTTTATCTTG----AAAAAGCTCCTCT-AAGTAAAGGCTC
* *
8264182 AACAACTTTAAAAATTTCATCTT-AAAAAGGCTCCTCTAATTAAAGGCTC
1 AACAACTTTAAAAATTTTATCTTGAAAAA-GCTCCTCTAAGTAAAGGCTC
* * * * * * *
8264231 AACAACTTTAACAATTTCATCTTTAAAAAACTCCTCTAAGCAGAGACTC
1 AACAACTTTAAAAATTTTATCTTGAAAAAGCTCCTCTAAGTAAAGGCTC
** *** *
8264280 AACATTTTTAAAAAAAATATCTCGAAAAAGCTCCTCTAAGTAAAGGCTC
1 AACAACTTTAAAAATTTTATCTTGAAAAAGCTCCTCTAAGTAAAGGCTC
* * * * * * *
8264329 AATAACTTTAAAAAATTATCATTTTGAAAAAGACTCTTCTTAGTAGAGGGTC
1 AACAACTTT-AAAAATT-TTATCTTGAAAAAG-CTCCTCTAAGTAAAGGCTC
* * * *
8264381 AACAACTTT-AAAATTTTATCTTGGAAAAGCCTCTTCTAAGCAGAA-GCAC
1 AACAACTTTAAAAATTTTATCTTGAAAAAG-CTCCTCTAAGTA-AAGGCTC
** * * * * *
8264430 AACAACTTTAAAAAAAAATCACCTCGAAAAAGCTCTTCTAAGTAGAGGCTC
1 AACAACTTT--AAAAATTTTATCTTGAAAAAGCTCCTCTAAGTAAAGGCTC
* * * *
8264481 AACAACTTTAAAAATTTCTCATTTTGGAAAAGGCTCATCTTAGTAGAA-GCTC
1 AACAACTTTAAAAATTT-T-ATCTT-GAAAAAGCTCCTCTAAGTA-AAGGCTC
* * *
8264533 AACAACTTT-AAAATTTTATCTTGAAAAAGGCTCAT-TGAAGCAAAAGCTC
1 AACAACTTTAAAAATTTTATCTTGAAAAA-GCTCCTCT-AAGTAAAGGCTC
* ** *
8264582 AACAACTTTAAAAATTTTTATCTTAAAAAAAGCTTATCTAAGCAAAGGCTC
1 AACAACTTTAAAAA-TTTTATCTT-GAAAAAGCTCCTCTAAGTAAAGGCTC
8264633 AACAACTTTAAAAA
1 AACAACTTTAAAAA
8264647 AATTCTTCTC
Statistics
Matches: 745, Mismatches: 136, Indels: 80
0.78 0.14 0.08
Matches are distributed among these distances:
48 17 0.02
49 260 0.35
50 147 0.20
51 142 0.19
52 91 0.12
53 86 0.12
54 2 0.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (49 bp):
AACAACTTTAAAAATTTTATCTTGAAAAAGCTCCTCTAAGTAAAGGCTC
Found at i:8263868 original size:152 final size:150
Alignment explanation
Indices: 8263669--8264646 Score: 643
Period size: 152 Copynumber: 6.5 Consensus size: 150
8263659 TTCTTGGTAG
* * ** * *
8263669 AGGTTTAACAACCTTTTAAAATTCTTATC-TT-GAAAAAGCTCCTCTAAGTAGAGGCTAAACAAT
1 AGGTTCAACAA-CTTTAAAAATT-TTATCTTTGGAAAAAAATCCTCTAAGTAGAGGCTCAACAAC
* *
8263732 TTTAAAAATTTTATCTTGAAAAATCTCTTCTAAGTAGAGGTTCAACAATTTTAAAAATTTCATCT
64 TTTAAAAATTTTATCTTGAAAAAACTCTTCTAAGTAGAGGCTCAACAATTTTAAAAATTTCATCT
* *
8263797 TGAAAAAAGCCCCTCTAAGTAA
129 TGAAAAAAGCTCCTCTAAGCAA
* * * * *
8263819 AGGTTCAACGACTTTAAAAATTTTATCTTCTTGAAAAAATATCCTCTAAGCAAAGGCTCAATAAC
1 AGGTTCAACAACTTTAAAAATTTTATCTT-TGGAAAAAA-ATCCTCTAAGTAGAGGCTCAACAAC
* * * * *
8263884 TTTAAAAATTTCATCTTGAAAAAGCT-TCTCTTAGTAGAGGCTCAACATATTTAAAAAAAATT-A
64 TTTAAAAATTTTATCTTGAAAAAACTCT-TCTAAGTAGAGGCTCAACA-ATTT-TAAAAATTTCA
* *
8263947 TTTTG-AAAAAGCTTCTCTAAGCAA
126 TCTTGAAAAAAGCTCCTCTAAGCAA
* * * ** *
8263971 AGGCTT-AACAACTTTAAAAAATTTTCAT-TTTGGAAAAGACTCATCTTGGTAGAAGCTCAACAA
1 AGG-TTCAACAACTTT-AAAAATTTT-ATCTTTGGAAAAAAATCCTCTAAGTAGAGGCTCAACAA
* * * *
8264034 CTTT-AAAATTTTATCTTGAAAAAAACTCCTCTAAGCAAAGGCTCAACAACTTTAAAAATTCTCA
63 CTTTAAAAATTTTATCTTG-AAAAAACTCTTCTAAGTAGAGGCTCAACAATTTTAAAAATT-TCA
*
8264098 TCTTGAAAAAAGCTCTTCTAAGCAA
126 TCTTGAAAAAAGCTCCTCTAAGCAA
* * * * * * * **
8264123 AAGCTCAATAACTTTAAAAATTTTATC-TTGAAAAAAAAAGCTTCTCTGAA-CAAAAACTCAACA
1 AGGTTCAACAACTTTAAAAATTTTATCTTTG-GAAAAAAA--TCCTCT-AAGTAGAGGCTCAACA
* * * * * * *
8264186 ACTTTAAAAATTTCATCTT-AAAAAGGCTCCTCTAATTAAAGGCTCAACAACTTTAACAATTTCA
62 ACTTTAAAAATTTTATCTTGAAAAA-ACTCTTCTAAGTAGAGGCTCAACAATTTTAAAAATTTCA
* *
8264250 TCTTTAAAAAA-CTCCTCTAAGCAG
126 TCTTGAAAAAAGCTCCTCTAAGCAA
** ** *** * ** * *
8264274 AGACTCAACATTTTTAAAAAAAATATC--TCGAAAAAGCTCCTCTAAGTAAAGGCTCAATAACTT
1 AGGTTCAACAACTTTAAAAATTTTATCTTTGGAAAAAAATCCTCTAAGTAGAGGCTCAACAACTT
* * * * * *
8264337 TAAAAAATTATCATTTTGAAAAAGACTCTTCTTAGTAGAGGGTCAACAACTTT-AAAATTTTATC
66 T-AAAAATT-TTATCTTGAAAAA-ACTCTTCTAAGTAGAGGCTCAACAATTTTAAAAATTTCATC
* *
8264401 TTG-GAAAAGCCTCTTCTAAGCAGA
128 TTGAAAAAAG-CTCCTCTAAGCA-A
** *** ** * ** *
8264425 A-GCACAACAACTTTAAAAA-AAAATCACCTCGAAAAAGCTCTTCTAAGTAGAGGCTCAACAACT
1 AGGTTCAACAACTTTAAAAATTTTATC-TTTGGAAAAAAATCCTCTAAGTAGAGGCTCAACAACT
* ** * * * * *
8264488 TTAAAAATTTCTCATTTTGGAAAAGGCTCATCTTAGTAGAAGCTCAACAACTTT-AAAATTTTAT
65 TTAAAAATTT-T-ATCTT-GAAAAAACTCTTCTAAGTAGAGGCTCAACAATTTTAAAAATTTCAT
* *
8264552 CTTGAAAAAGGCTCAT-TGAAGCAA
127 CTTGAAAAAAGCTCCTCT-AAGCAA
* * ** * *
8264576 AAGCTCAACAACTTTAAAAATTTTTATC-TT--AAAAAAAGCTTATCTAAGCAAAGGCTCAACAA
1 AGGTTCAACAACTTTAAAAA-TTTTATCTTTGGAAAAAAA--TCCTCTAAGTAGAGGCTCAACAA
8264638 CTTTAAAAA
63 CTTTAAAAA
8264647 AATTCTTCTC
Statistics
Matches: 663, Mismatches: 122, Indels: 84
0.76 0.14 0.10
Matches are distributed among these distances:
146 2 0.00
147 19 0.03
148 16 0.02
149 44 0.07
150 93 0.14
151 111 0.17
152 272 0.41
153 82 0.12
154 24 0.04
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (150 bp):
AGGTTCAACAACTTTAAAAATTTTATCTTTGGAAAAAAATCCTCTAAGTAGAGGCTCAACAACTT
TAAAAATTTTATCTTGAAAAAACTCTTCTAAGTAGAGGCTCAACAATTTTAAAAATTTCATCTTG
AAAAAAGCTCCTCTAAGCAA
Found at i:8264238 original size:102 final size:101
Alignment explanation
Indices: 8263675--8264646 Score: 751
Period size: 101 Copynumber: 9.6 Consensus size: 101
8263665 GTAGAGGTTT
* * * * *
8263675 AACAACCTTTTAAAATTCTTATCTTG-AAAAAGCTCCTCTAAGTAGAGGCTAAACAATTTTAAAA
1 AACAA-CTTTAAAAATT-TCATCTTGAAAAAAGCTCCTCTAAGTAAAGGCTCAACAACTTTAAAA
* * * * *
8263739 ATTTTATCTTG--AAAAATCTCTTCTAAGTAGAGGTTC
64 ATTTTATCTTGAAAAAAAGCTCCTCTAAGCAAAGGCTC
* * * *
8263775 AACAATTTTAAAAATTTCATCTTGAAAAAAGCCCCTCTAAGTAAAGGTTCAACGACTTTAAAAAT
1 AACAACTTTAAAAATTTCATCTTGAAAAAAGCTCCTCTAAGTAAAGGCTCAACAACTTTAAAAAT
8263840 TTTATCTTCTTGAAAAAATA--TCCTCTAAGCAAAGGCTC
66 TTTA---TCTTGAAAAAA-AGCTCCTCTAAGCAAAGGCTC
* * * *
8263878 AATAACTTTAAAAATTTCATCTTG-AAAAAGCTTCTCTTAGTAGAGGCTCAACATA-TTTAAAAA
1 AACAACTTTAAAAATTTCATCTTGAAAAAAGCTCCTCTAAGTAAAGGCTCAACA-ACTTT-AAAA
** * * *
8263941 AAATTATTTTG--AAAAAGCTTCTCTAAGCAAAGGCTT
64 ATTTTATCTTGAAAAAAAGCTCCTCTAAGCAAAGGCTC
* * * **
8263977 AACAACTTTAAAAAATTTTCATTTTG-GAAAAGACTCATCTTGGTAGAA-GCTCAACAACTTT-A
1 AACAACTTT-AAAAA-TTTCATCTTGAAAAAAG-CTCCTCTAAGTA-AAGGCTCAACAACTTTAA
8264039 AAATTTTATCTTGAAAAAAA-CTCCTCTAAGCAAAGGCTC
62 AAATTTTATCTTGAAAAAAAGCTCCTCTAAGCAAAGGCTC
* * * *
8264078 AACAACTTTAAAAATTCTCATCTTGAAAAAAGCTCTTCTAAGCAAAAGCTCAATAACTTTAAAAA
1 AACAACTTTAAAAATT-TCATCTTGAAAAAAGCTCCTCTAAGTAAAGGCTCAACAACTTTAAAAA
* **
8264143 TTTTATCTTGAAAAAAAAAGCTTCTCTGAA-CAAAAACTC
65 TTTTATCTTG--AAAAAAAGCTCCTCT-AAGCAAAGGCTC
* * *
8264182 AACAACTTTAAAAATTTCATCTT-AAAAAGGCTCCTCTAATTAAAGGCTCAACAACTTTAACAAT
1 AACAACTTTAAAAATTTCATCTTGAAAAAAGCTCCTCTAAGTAAAGGCTCAACAACTTTAAAAAT
* * * *
8264246 TTCATCTT-TAAAAAA-CTCCTCTAAGCAGAGACTC
66 TTTATCTTGAAAAAAAGCTCCTCTAAGCAAAGGCTC
** ** * *
8264280 AACATTTTTAAAAAAAAT-ATCTCG-AAAAAGCTCCTCTAAGTAAAGGCTCAATAACTTTAAAAA
1 AACAACTTT-AAAAATTTCATCTTGAAAAAAGCTCCTCTAAGTAAAGGCTCAACAACTTT-AAAA
* * * * * * * *
8264343 ATTATCATTTTGAAAAAGA-CTCTTCTTAGTAGAGGGTC
64 ATT-TTATCTTGAAAAAAAGCTCCTCTAAGCAAAGGCTC
* * * * *
8264381 AACAACTTT-AAAATTTTATCTTG-GAAAAGCCTCTTCTAAGCAGAA-GCACAACAACTTTAAAA
1 AACAACTTTAAAAATTTCATCTTGAAAAAAG-CTCCTCTAAGTA-AAGGCTCAACAACTTT--AA
** * * * * * *
8264443 AAAAATCACCTCG--AAAAAGCTCTTCTAAGTAGAGGCTC
62 AAATTTTATCTTGAAAAAAAGCTCCTCTAAGCAAAGGCTC
* * * * *
8264481 AACAACTTTAAAAATTTCTCATTTTGGAAAAGGCTCATCTTAGTAGAA-GCTCAACAACTTT-AA
1 AACAACTTTAAAAA-TT-TCATCTTGAAAAAAGCTCCTCTAAGTA-AAGGCTCAACAACTTTAAA
* * *
8264544 AATTTTATCTTG-AAAAAGGCTCAT-TGAAGCAAAAGCTC
63 AATTTTATCTTGAAAAAAAGCTCCTCT-AAGCAAAGGCTC
* * ** *
8264582 AACAACTTTAAAAATTTTTATCTTAAAAAAAGCTTATCTAAGCAAAGGCTCAACAACTTTAAAAA
1 AACAACTTTAAAAA-TTTCATCTTGAAAAAAGCTCCTCTAAGTAAAGGCTCAACAACTTTAAAAA
8264647 AATTCTTCTC
Statistics
Matches: 706, Mismatches: 121, Indels: 89
0.77 0.13 0.10
Matches are distributed among these distances:
97 3 0.00
98 66 0.09
99 104 0.15
100 141 0.20
101 155 0.22
102 107 0.15
103 90 0.13
104 37 0.05
105 3 0.00
ACGTcount: A:0.42, C:0.18, G:0.10, T:0.30
Consensus pattern (101 bp):
AACAACTTTAAAAATTTCATCTTGAAAAAAGCTCCTCTAAGTAAAGGCTCAACAACTTTAAAAAT
TTTATCTTGAAAAAAAGCTCCTCTAAGCAAAGGCTC
Found at i:8264485 original size:100 final size:104
Alignment explanation
Indices: 8264354--8264545 Score: 284
Period size: 103 Copynumber: 1.9 Consensus size: 104
8264344 TTATCATTTT
* * *
8264354 GAAAAAGACTCTTCTTAGTAGAGGGTCAACAACTTT-AAAATTT-T-ATCTTGGAAAAGCCTCTT
1 GAAAAAGACTCTTCTAAGTAGAGGCTCAACAACTTTAAAAATTTCTCATCTTGGAAAAGCCTCAT
8264416 CTAAGCAGAAGCACAACAACTTTAAAAAAAAATCACCTC
66 CTAAGCAGAAGCACAACAACTTTAAAAAAAAATCACCTC
* *
8264455 GAAAAAG-CTCTTCTAAGTAGAGGCTCAACAACTTTAAAAATTTCTCATTTTGGAAAAGGCTCAT
1 GAAAAAGACTCTTCTAAGTAGAGGCTCAACAACTTTAAAAATTTCTCATCTTGGAAAAGCCTCAT
* * *
8264519 CTTAGTAGAAGCTCAACAACTTTAAAA
66 CTAAGCAGAAGCACAACAACTTTAAAA
8264546 TTTTATCTTG
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
100 26 0.32
101 14 0.17
102 1 0.01
103 39 0.49
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.27
Consensus pattern (104 bp):
GAAAAAGACTCTTCTAAGTAGAGGCTCAACAACTTTAAAAATTTCTCATCTTGGAAAAGCCTCAT
CTAAGCAGAAGCACAACAACTTTAAAAAAAAATCACCTC
Found at i:8264649 original size:352 final size:346
Alignment explanation
Indices: 8263657--8264648 Score: 1075
Period size: 352 Copynumber: 2.8 Consensus size: 346
8263647 GGAGAAAGGT
* * * *
8263657 TCTTCTTGGTAGAGGTTTAACAACCTTTTAAAATTCTTATCTTGAAAAAGCTCCTCTAAGTAGAG
1 TCTTCTTGGTAGAGGCTCAACAA-C-TTTAAAATT-TTATCTTGAAAAAGCTCCTCTAAGCAGAA
* * * * * *
8263722 GCTA-AACAA-TTTTAAAAATTTTATCTTGAAAAATCTCTTCTAAGTAGAGGTTCAACAATTTTA
63 GC-ACAACAACTTTAAAAAATATCATCTTGAAAAAGCTCTTCTAAGTAGAGGCTCAACAACTTTA
* * *
8263785 AAAA-TTTCATCTTGAAAAAAGCCCCTCTAAGTAAAGGTTCAACGACTTTAAAAATTTTATCTTC
127 AAAATTTTCATCTTGAAAAAAG-CTCTCTAAGTAAA-GCTCAACAACTTTAAAAATTTTA---TC
*** * *
8263849 TTGAAAAAATATCCTCTAAGCAAAGGCTCAATAACTTTAAAAATTTCATCTTGAAAAAGCTTCTC
187 TTGAAAAAGGCTCCTCTAAGCAAAGGCTCAACAACTTTAAAAATTTCATCTTAAAAAAGCTTCTC
* * * * * *
8263914 TTAGTAGAGGCTCAACATATTTAAAAAAAATTATTTTGAAAAAGCTTCTCTAAGCAAAGGCTTAA
252 TAAGCAGAGGCTCAACA-ATTTAAAAAAAA-TATCTCGAAAAAGCTCCTCTAAGCAAAGGCTCAA
* *
8263979 CAACTTTAAAAAATTTTCATTTTGGAAAAGAC
315 CAACTTTAAAAAATTATCATTTTGAAAAAGAC
* * *
8264011 TCATCTTGGTAGAAGCTCAACAACTTTAAAATTTTATCTTGAAAAAAACTCCTCTAAGCA-AAGG
1 TCTTCTTGGTAGAGGCTCAACAACTTTAAAATTTTATCTTG-AAAAAGCTCCTCTAAGCAGAA-G
* * * * * * *
8264075 CTCAACAACTTTAAAAATTCTCATCTTGAAAAAAGCTCTTCTAAGCAAAAGCTCAATAACTTTAA
64 CACAACAACTTTAAAAAATATCATCTTG-AAAAAGCTCTTCTAAGTAGAGGCTCAACAACTTTAA
** * *
8264140 AAATTTT-ATCTTGAAAAAAAAAGCTTCTCTGAACAAAAACTCAACAACTTTAAAAATTTCATCT
128 AAATTTTCATCTTG---AAAAAAGC-TCTCT-AAGTAAAGCTCAACAACTTTAAAAATTTTATCT
** * *
8264204 T-AAAAAGGCTCCTCTAATTAAAGGCTCAACAACTTTAACAATTTCATCTTTAAAAAA-CTCCTC
188 TGAAAAAGGCTCCTCTAAGCAAAGGCTCAACAACTTTAAAAATTTCATC-TTAAAAAAGCTTCTC
* * * *
8264267 TAAGCAGAGACTCAACATTTTTAAAAAAAATATCTCGAAAAAGCTCCTCTAAGTAAAGGCTCAAT
252 TAAGCAGAGGCTCAACA-ATTTAAAAAAAATATCTCGAAAAAGCTCCTCTAAGCAAAGGCTCAAC
8264332 AACTTTAAAAAATTATCATTTTGAAAAAGAC
316 AACTTTAAAAAATTATCATTTTGAAAAAGAC
* * * *
8264363 TCTTCTTAGTAGAGGGTCAACAACTTTAAAATTTTATCTTGGAAAAGCCTCTTCTAAGCAGAAGC
1 TCTTCTTGGTAGAGGCTCAACAACTTTAAAATTTTATCTTGAAAAAG-CTCCTCTAAGCAGAAGC
* * *
8264428 ACAACAACTTTAAAAAAAAATCACCTCGAAAAAGCTCTTCTAAGTAGAGGCTCAACAACTTTAAA
65 ACAACAACTTT-AAAAAATATCATCTTGAAAAAGCTCTTCTAAGTAGAGGCTCAACAACTTTAAA
* * * *
8264493 AATTTCTCATTTTGGAAAAGGCTCATCTTAGTAGAAGCTCAACAACTTT-AAAATTTTATCTTGA
129 AATTT-TCATCTTGAAAAAAGCTC-TCTAAGTA-AAGCTCAACAACTTTAAAAATTTTATCTTGA
* * * *
8264557 AAAAGGCTCAT-TGAAGCAAAAGCTCAACAACTTTAAAAATTTTTATCTTAAAAAAAGCTTATCT
191 AAAAGGCTCCTCT-AAGCAAAGGCTCAACAACTTTAAAAA-TTTCATCTT-AAAAAAGCTTCTCT
*
8264621 AAGCAAAGGCTCAACAACTTTAAAAAAA
253 AAGCAGAGGCTCAACAA-TTTAAAAAAA
8264649 TTCTTCTCTT
Statistics
Matches: 530, Mismatches: 83, Indels: 51
0.80 0.12 0.08
Matches are distributed among these distances:
350 17 0.03
351 71 0.13
352 200 0.38
353 130 0.25
354 73 0.14
355 3 0.01
356 1 0.00
357 30 0.06
358 5 0.01
ACGTcount: A:0.41, C:0.17, G:0.10, T:0.31
Consensus pattern (346 bp):
TCTTCTTGGTAGAGGCTCAACAACTTTAAAATTTTATCTTGAAAAAGCTCCTCTAAGCAGAAGCA
CAACAACTTTAAAAAATATCATCTTGAAAAAGCTCTTCTAAGTAGAGGCTCAACAACTTTAAAAA
TTTTCATCTTGAAAAAAGCTCTCTAAGTAAAGCTCAACAACTTTAAAAATTTTATCTTGAAAAAG
GCTCCTCTAAGCAAAGGCTCAACAACTTTAAAAATTTCATCTTAAAAAAGCTTCTCTAAGCAGAG
GCTCAACAATTTAAAAAAAATATCTCGAAAAAGCTCCTCTAAGCAAAGGCTCAACAACTTTAAAA
AATTATCATTTTGAAAAAGAC
Found at i:8265471 original size:28 final size:28
Alignment explanation
Indices: 8265439--8265502 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 28
8265429 AGATATATCA
8265439 TTTTTTTTCATATTTTTTTTT-GTTTTTC
1 TTTTTTTTC-TATTTTTTTTTAGTTTTTC
*
8265467 TTTTTTGTTCTATTTTTTTTTATTTTTTC
1 TTTTTT-TTCTATTTTTTTTTAGTTTTTC
8265496 TTTTTTT
1 TTTTTTT
8265503 AAGTAAAATA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
28 18 0.55
29 15 0.45
ACGTcount: A:0.06, C:0.06, G:0.03, T:0.84
Consensus pattern (28 bp):
TTTTTTTTCTATTTTTTTTTAGTTTTTC
Found at i:8265471 original size:29 final size:29
Alignment explanation
Indices: 8265439--8265502 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
8265429 AGATATATCA
8265439 TTTTTTTTCATATTTTTTTTT-GTTTTTCT
1 TTTTTTTTC-TATTTTTTTTTAGTTTTTCT
* *
8265468 TTTTTGTTCTATTTTTTTTTATTTTTTCT
1 TTTTTTTTCTATTTTTTTTTAGTTTTTCT
8265497 TTTTTT
1 TTTTTT
8265503 AAGTAAAATA
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
28 11 0.35
29 20 0.65
ACGTcount: A:0.06, C:0.06, G:0.03, T:0.84
Consensus pattern (29 bp):
TTTTTTTTCTATTTTTTTTTAGTTTTTCT
Found at i:8274781 original size:25 final size:24
Alignment explanation
Indices: 8274740--8274786 Score: 58
Period size: 24 Copynumber: 1.9 Consensus size: 24
8274730 AGCTTGGCCA
* *
8274740 ATTTTTTGTTATAACTTGATTTTG
1 ATTTTTTGGTAAAACTTGATTTTG
*
8274764 ATTTTTTGGTAAACACTTTATTT
1 ATTTTTTGGTAAA-ACTTGATTT
8274787 GGACACTGTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
24 11 0.58
25 8 0.42
ACGTcount: A:0.23, C:0.06, G:0.11, T:0.60
Consensus pattern (24 bp):
ATTTTTTGGTAAAACTTGATTTTG
Found at i:8276335 original size:16 final size:17
Alignment explanation
Indices: 8276304--8276336 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
8276294 AAGATTAAAA
*
8276304 AATATTTTTTATGTTTT
1 AATATTTTTTAGGTTTT
8276321 AATATTTTTT-GGTTTT
1 AATATTTTTTAGGTTTT
8276337 GTTTTCATTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.70
Consensus pattern (17 bp):
AATATTTTTTAGGTTTT
Found at i:8277280 original size:976 final size:968
Alignment explanation
Indices: 8275115--8277068 Score: 2680
Period size: 976 Copynumber: 2.0 Consensus size: 968
8275105 GCTTTTGTTG
* * * * * * * * ** *
8275115 ACCAAACATATACTTCATTATATGGCTCACATGGGACATTAACTAAGGATGAGTAAATCTGAAGT
1 ACCAAAAACATACTCCATTATAT-ACTCAAATGGAAAATTAACTAAGAATGAGTAAATAAGAAAT
* * ** * *
8275180 TTTATAGGATCCATGAAGACTTCTTTATGAGAAAGATGTCTTAGAGCAAATACCTTGATACAAAA
65 TTTATAGGATCCATCAAGACTAC-TTAT----AAGA-GTCCGAGAGCAAATACCGTGAGACAAAA
* ** * * *** *
8275245 CTATATAATATGATTAATGTAAAAAGAAAAAAATGAAAACAAAACAAAATTGAGTTAGTGTGAGG
124 CTACATAATATGACCAATGTAAAAAGAAAAAAATGAAAACAAACCAAAATTGAGTAAAAATGACG
*
8275310 ATGTAGTTTGAGATTAAAAAATATTTTTTATGTTTTAAGATTTTTTGTTTTGTTTTCATTTTTGT
189 ATGTAGTTTAAGATTAAAAAATATTTTTTATGTTTTAAGATTTTTTGTTTTGTTTTCATTTTTGT
8275375 TTATGCTTTTTATTACACATAACTTTTATTCCTATATGTTTTGGACTTAGGTATTTCTTACAAAA
254 TTATGCTTTTTATTACACATAACTTTTATTCCTATATGTTTTGGACTTAGGTATTTCTTACAAAA
8275440 GGCTCTACCTAAGGTTAGCTTCCTAGGCTTATTACATATTTGGTTCGAATTGACACACATCTAGA
319 GGCTCTACCTAAGGTTAGCTTCCTAGGCTTATTACATATTTGGTTCGAATTGACACACATCTAGA
8275505 GGTTCTCAAATTGTTATTCACTATCATCCACACTGAACTAGTAAGGCACCCCGATCTTCAGTCAT
384 GGTTCTCAAATTGTTATTCACTATCATCCACACTGAACTAGTAAGGCACCCCGATCTTCAGTCAT
* *
8275570 TACAGGCTACGAATAAAAAGGGATTAATTTGAGTGAAAGTATTTTACTTGCCATTACAGAGGTTA
449 TACAGGCTACGAATAAAAAGGGATTAATTTAAGTGAAAGTATTTTACTTGCCATTACAAAGGTTA
* * *
8275635 TCACCTTACGAGAGCTTAAGTACTTTACTTCCTCCTATAAGGGATGGATCTAAGGTATAGAGCTC
514 TCACCTTACGAGAGCATAAGTACTTTACTTCCTCCTATAAGGGACGGATCCAAGGTATAGAGCTC
* * *
8275700 ATGCATGAGATGCATCATGTCATTCTATGTGCAAATGTATCTTAATTTATCAAGAGTAATACATA
579 ATGCATGAAATGCATCATGCCATTATATGTGCAAATGTATCTTAATTTATCAAGAGTAATACATA
*
8275765 CAGAAAAATGAAGCATAAGAGGCATAATAAAAAAAATGTATGTGAAAATTTTCATTTTGTTTTGA
644 CAGAAAAATAAAGCATAAGAGGCATAATAAAAAAAATGTATGTGAAAATTTTCATTTTGTTTTGA
* * * *
8275830 TTTTTTTTTGGCTTTTTTTTAAATGAAAATTTTAAATCTAAGAAATTTAAATTTAAATATTGATT
709 TTTTTTTTTGACTTTTTTTTAAATGAAAAATTAAAATCTAAGAAATTTAAATTTAAATATCGATT
* *
8275895 AAAACTATTTATATCAAAATTTAAGGATAACATGTAGTTAATTTTGACCTGACTCTAAAAAAAAA
774 AAAACTATTTATATCAAAATTTAAGGATAACACGTAGTTAATTTAGACCTGACTC-AAAAAAAAA
* * * * * *
8275960 AAATGATGTCTCCAGTGAAGTCTCCAAGCTCTCATAATGGTTTTGGAGCCGCCCAACGAATTTGG
838 AAATGACGTCTCCAATAAAGTCTCCAAGCTCTCATAATGGTTTTAGAGACGCCCAACGAATTTAG
* ** **
8276025 AGACGAAAATAAAAAAAAAATAAAAAATGGAGTCATCACCAATCATTTTTGGCTATGCTTTTTTT
903 AGACGAAAATAAAAAAAAAATAAAAAATAGAGTCATCACCAATCATTTTTGGCTATGCAATTGGT
*
8276090 G
968 C
* * * * * * * * ** *
8276091 ACCAAACATATACTTCATTATATAGCTCACATGGGACATTGACTAAGGATGAGTAAATCTGAATT
1 ACCAAAAACATACTCCATTATATA-CTCAAATGGAAAATTAACTAAGAATGAGTAAATAAGAAAT
* * ** * *
8276156 TTTATAGGATCCATGAAGACTTCTTATGAGAAAGATGTCTTAGAGCAAATACCTTGATACAAAAC
65 TTTATAGGATCCATCAAGACTACTTAT----AAGA-GTCCGAGAGCAAATACCGTGAGACAAAAC
* ** * *** *
8276221 TATATAATATGATTAATGTAAAAAGAAAAAAATGAAAACAAACCAAAATTGAGTTAGTGTGAGGA
125 TACATAATATGACCAATGTAAAAAGAAAAAAATGAAAACAAACCAAAATTGAGTAAAAATGACGA
* *
8276286 TGTGGTTTAAGATTAAAAAATATTTTTTATGTTTTAATATTTTTTGGTTTTGTTTTCATTTTTGT
190 TGTAGTTTAAGATTAAAAAATATTTTTTATGTTTTAAGATTTTTT-GTTTTGTTTTCATTTTTGT
* * *
8276351 TTGTGTTTTTTATTACATATAACTTTTATTCCTATATGTTTTGGACTTAGGTATTTCTTACAAAA
254 TTATGCTTTTTATTACACATAACTTTTATTCCTATATGTTTTGGACTTAGGTATTTCTTACAAAA
* * *
8276416 GGCTCTACCTAAGTTTAGCTTCCTAGGCTTATTACATGTTTGGTTCGAATTGACACACGTCTAGA
319 GGCTCTACCTAAGGTTAGCTTCCTAGGCTTATTACATATTTGGTTCGAATTGACACACATCTAGA
* * * *
8276481 GGTTCTCAAATTGTTATTCACTGTCATCCACGCTGAACTAGTAAGGCACCCTGATCTTTAGTCAT
384 GGTTCTCAAATTGTTATTCACTATCATCCACACTGAACTAGTAAGGCACCCCGATCTTCAGTCAT
* * *
8276546 TACAGGCTACGAATGAAAAA-GGTTTAATTTAAGTGAAAGTATTTTGCTTGCCATTGCAAAGGTT
449 TACAGGCTACGAAT-AAAAAGGGATTAATTTAAGTGAAAGTATTTTACTTGCCATTACAAAGGTT
8276610 ATCACCTTACGAGAGCATAAGTACTTTACTTCCTCCTATAAGGGACGGATCCAAGGTATAGAGCT
513 ATCACCTTACGAGAGCATAAGTACTTTACTTCCTCCTATAAGGGACGGATCCAAGGTATAGAGCT
* *
8276675 CATGCATGAAATGCATCATGCCATTATGTGTGCAAATGTATCTTAATTTATCAAGAGTAATATAT
578 CATGCATGAAATGCATCATGCCATTATATGTGCAAATGTATCTTAATTTATCAAGAGTAATACAT
* * *
8276740 ACAGAAAAATAAAGCATAAGAGGCATAATTAAAAAAATGTATGTGAAATTTTTCATTTTATTTTT
643 ACAGAAAAATAAAGCATAAGAGGCATAATAAAAAAAATGTATGTGAAAATTTTCATTTT-GTTTT
8276805 GATTTTTTTTT-ACTTTTTTTTAAAATGAAAAATTAAAATCTAAGAAATTTAAATTTAAATATCG
707 GATTTTTTTTTGACTTTTTTTT-AAATGAAAAATTAAAATCTAAGAAATTTAAATTTAAATATCG
* ***
8276869 ATTAAAACTATTTATATCAAAATTTAAGGATAATACGTAGTTAATTGTAG-CCTGACTC-CCGAA
771 ATTAAAACTATTTATATCAAAATTTAAGGATAACACGTAGTTAATT-TAGACCTGACTCAAAAAA
* *
8276932 AAAAAATGACGT-TCCCAATAAAGTCTCGAAGCTCTCATAATGGTTTTAGAGACGCCCAATGAAT
835 AAAAAATGACGTCT-CCAATAAAGTCTCCAAGCTCTCATAATGGTTTTAGAGACGCCCAACGAAT
* * * *
8276996 TTAGAGATGAAAAT-AAAAAAATA-AAAAAATAGAGTCGTCACCAATCATTTTTGGTTATGTGCA
899 TTAGAGACGAAAATAAAAAAAAAATAAAAAATAGAGTCATCACCAATCATTTTTGGCTA--TGCA
8277059 ATTGGTC
962 ATTGGTC
8277066 ACC
1 ACC
8277069 TATTAAAACA
Statistics
Matches: 907, Mismatches: 62, Indels: 19
0.92 0.06 0.02
Matches are distributed among these distances:
973 31 0.03
974 9 0.01
975 226 0.25
976 528 0.58
977 111 0.12
978 2 0.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.35
Consensus pattern (968 bp):
ACCAAAAACATACTCCATTATATACTCAAATGGAAAATTAACTAAGAATGAGTAAATAAGAAATT
TTATAGGATCCATCAAGACTACTTATAAGAGTCCGAGAGCAAATACCGTGAGACAAAACTACATA
ATATGACCAATGTAAAAAGAAAAAAATGAAAACAAACCAAAATTGAGTAAAAATGACGATGTAGT
TTAAGATTAAAAAATATTTTTTATGTTTTAAGATTTTTTGTTTTGTTTTCATTTTTGTTTATGCT
TTTTATTACACATAACTTTTATTCCTATATGTTTTGGACTTAGGTATTTCTTACAAAAGGCTCTA
CCTAAGGTTAGCTTCCTAGGCTTATTACATATTTGGTTCGAATTGACACACATCTAGAGGTTCTC
AAATTGTTATTCACTATCATCCACACTGAACTAGTAAGGCACCCCGATCTTCAGTCATTACAGGC
TACGAATAAAAAGGGATTAATTTAAGTGAAAGTATTTTACTTGCCATTACAAAGGTTATCACCTT
ACGAGAGCATAAGTACTTTACTTCCTCCTATAAGGGACGGATCCAAGGTATAGAGCTCATGCATG
AAATGCATCATGCCATTATATGTGCAAATGTATCTTAATTTATCAAGAGTAATACATACAGAAAA
ATAAAGCATAAGAGGCATAATAAAAAAAATGTATGTGAAAATTTTCATTTTGTTTTGATTTTTTT
TTGACTTTTTTTTAAATGAAAAATTAAAATCTAAGAAATTTAAATTTAAATATCGATTAAAACTA
TTTATATCAAAATTTAAGGATAACACGTAGTTAATTTAGACCTGACTCAAAAAAAAAAAATGACG
TCTCCAATAAAGTCTCCAAGCTCTCATAATGGTTTTAGAGACGCCCAACGAATTTAGAGACGAAA
ATAAAAAAAAAATAAAAAATAGAGTCATCACCAATCATTTTTGGCTATGCAATTGGTC
Found at i:8278007 original size:18 final size:19
Alignment explanation
Indices: 8277984--8278030 Score: 78
Period size: 19 Copynumber: 2.5 Consensus size: 19
8277974 ATTTTCTTAC
8277984 ATTTTTTAATTAT-TTATT
1 ATTTTTTAATTATATTATT
8278002 ATTTTTTAATTATATTATT
1 ATTTTTTAATTATATTATT
*
8278021 ATTTTATAAT
1 ATTTTTTAAT
8278031 GTTTATTTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
18 13 0.48
19 14 0.52
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (19 bp):
ATTTTTTAATTATATTATT
Found at i:8279168 original size:9 final size:8
Alignment explanation
Indices: 8279156--8279198 Score: 50
Period size: 8 Copynumber: 5.2 Consensus size: 8
8279146 TTGTTTTATC
8279156 TTTTTTGT
1 TTTTTTGT
* *
8279164 TTTTTAGC
1 TTTTTTGT
8279172 TTTTTTGT
1 TTTTTTGT
*
8279180 ATTTTTGT
1 TTTTTTGT
8279188 ATTTTTTGT
1 -TTTTTTGT
8279197 TT
1 TT
8279199 AATTAATAAA
Statistics
Matches: 28, Mismatches: 6, Indels: 2
0.78 0.17 0.06
Matches are distributed among these distances:
8 21 0.75
9 7 0.25
ACGTcount: A:0.07, C:0.02, G:0.12, T:0.79
Consensus pattern (8 bp):
TTTTTTGT
Found at i:8279174 original size:16 final size:16
Alignment explanation
Indices: 8279149--8279198 Score: 57
Period size: 16 Copynumber: 3.1 Consensus size: 16
8279139 GGTCCTTTTG
*
8279149 TTTTATCTTTTTTGTT
1 TTTTAGCTTTTTTGTT
8279165 TTTTAGCTTTTTTGTAT
1 TTTTAGCTTTTTTGT-T
*
8279182 TTTT-GTATTTTTTGTT
1 TTTTAG-CTTTTTTGTT
8279198 T
1 T
8279199 AATTAATAAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
16 17 0.57
17 13 0.43
ACGTcount: A:0.08, C:0.04, G:0.10, T:0.78
Consensus pattern (16 bp):
TTTTAGCTTTTTTGTT
Found at i:8280299 original size:2 final size:2
Alignment explanation
Indices: 8280292--8280318 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
8280282 AGTCTAATGC
8280292 AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT A
8280319 ATGTCTTAGT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8282391 original size:2 final size:2
Alignment explanation
Indices: 8282384--8282426 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
8282374 GATAACAAAA
8282384 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
8282426 A
1 A
8282427 ATGGACTCTT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:8285263 original size:11 final size:11
Alignment explanation
Indices: 8285247--8285276 Score: 51
Period size: 11 Copynumber: 2.6 Consensus size: 11
8285237 GGGTAAATAA
8285247 AACATTTGTAT
1 AACATTTGTAT
8285258 AACATTTGTAT
1 AACATTTGTAT
8285269 AAGCATTT
1 AA-CATTT
8285277 TTTTAATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 13 0.72
12 5 0.28
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (11 bp):
AACATTTGTAT
Found at i:8285562 original size:23 final size:25
Alignment explanation
Indices: 8285536--8285587 Score: 72
Period size: 23 Copynumber: 2.2 Consensus size: 25
8285526 TAAAAAAGTT
* *
8285536 AAAAGTTAAAAAA-TCAAGAAA-AA
1 AAAAGTGAAAAAATTAAAGAAATAA
8285559 AAAAGTGAAAAAATTAAAGAAATAA
1 AAAAGTGAAAAAATTAAAGAAATAA
8285584 AAAA
1 AAAA
8285588 AAAAAGCTCA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 12 0.48
24 7 0.28
25 6 0.24
ACGTcount: A:0.75, C:0.02, G:0.10, T:0.13
Consensus pattern (25 bp):
AAAAGTGAAAAAATTAAAGAAATAA
Found at i:8285562 original size:31 final size:31
Alignment explanation
Indices: 8285519--8285592 Score: 89
Period size: 31 Copynumber: 2.4 Consensus size: 31
8285509 ATATTTAATT
* *
8285519 TAAAAAATAAAAAAGT-TAAAAGTTAAA-AAA
1 TAAAAAA-AAAAAAGTGAAAAAATTAAAGAAA
*
8285549 TCAAGAAAAAAAAAGTGAAAAAATTAAAGAAA
1 T-AAAAAAAAAAAAGTGAAAAAATTAAAGAAA
8285581 TAAAAAAAAAAA
1 TAAAAAAAAAAA
8285593 GCTCATAGAA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
30 9 0.24
31 24 0.65
32 4 0.11
ACGTcount: A:0.76, C:0.01, G:0.08, T:0.15
Consensus pattern (31 bp):
TAAAAAAAAAAAAGTGAAAAAATTAAAGAAA
Found at i:8285563 original size:30 final size:30
Alignment explanation
Indices: 8285521--8285593 Score: 87
Period size: 30 Copynumber: 2.4 Consensus size: 30
8285511 ATTTAATTTA
* *
8285521 AAAAATAAAAAAGT-TAAAAGTTAAA-AAAT
1 AAAAA-AAAAAAGTGAAAAAATTAAAGAAAT
8285550 CAAGAAAAAAAAAGTGAAAAAATTAAAGAAAT
1 -AA-AAAAAAAAAGTGAAAAAATTAAAGAAAT
8285582 AAAAAAAAAAAG
1 AAAAAAAAAAAG
8285594 CTCATAGAAG
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
30 20 0.53
31 14 0.37
32 4 0.11
ACGTcount: A:0.75, C:0.01, G:0.10, T:0.14
Consensus pattern (30 bp):
AAAAAAAAAAAGTGAAAAAATTAAAGAAAT
Found at i:8287556 original size:18 final size:18
Alignment explanation
Indices: 8287525--8287562 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 18
8287515 GGATCCCATT
*
8287525 AAAAAAAAGTAAAA-AAA
1 AAAAAAAAGGAAAAGAAA
8287542 AAAAAAGAAGGAAAAGAAA
1 AAAAAA-AAGGAAAAGAAA
8287561 AA
1 AA
8287563 TTGGAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 6 0.33
18 7 0.39
19 5 0.28
ACGTcount: A:0.84, C:0.00, G:0.13, T:0.03
Consensus pattern (18 bp):
AAAAAAAAGGAAAAGAAA
Found at i:8291286 original size:16 final size:17
Alignment explanation
Indices: 8291262--8291302 Score: 66
Period size: 17 Copynumber: 2.5 Consensus size: 17
8291252 AATTTTAATT
*
8291262 TTAAATTTAAAA-AAAA
1 TTAATTTTAAAATAAAA
8291278 TTAATTTTAAAATAAAA
1 TTAATTTTAAAATAAAA
8291295 TTAATTTT
1 TTAATTTT
8291303 TTTTATAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 11 0.48
17 12 0.52
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (17 bp):
TTAATTTTAAAATAAAA
Found at i:8291300 original size:21 final size:21
Alignment explanation
Indices: 8291230--8291300 Score: 69
Period size: 22 Copynumber: 3.5 Consensus size: 21
8291220 TTAATGATAA
8291230 AAAATTTAATT-ATTTT-AAAT
1 AAAA-TTAATTAATTTTAAAAT
*
8291250 AAAATT--TTAATTTTAAATTT
1 AAAATTAATTAATTTTAAA-AT
**
8291270 AAAAAAAATTAATTTTAAAAT
1 AAAATTAATTAATTTTAAAAT
8291291 AAAATTAATT
1 AAAATTAATT
8291301 TTTTTTATAA
Statistics
Matches: 40, Mismatches: 6, Indels: 9
0.73 0.11 0.16
Matches are distributed among these distances:
17 2 0.05
18 5 0.12
19 4 0.10
20 9 0.22
21 9 0.22
22 11 0.28
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (21 bp):
AAAATTAATTAATTTTAAAAT
Found at i:8293549 original size:35 final size:36
Alignment explanation
Indices: 8293495--8293568 Score: 114
Period size: 35 Copynumber: 2.1 Consensus size: 36
8293485 TTACTTCATT
* * *
8293495 AATATAATATATTTTTATAAAGTTAAATAAACAATA
1 AATATAATATATATGTATAAAGGTAAATAAACAATA
8293531 AATAT-ATATATATGTATAAAGGTAAATAAACAATA
1 AATATAATATATATGTATAAAGGTAAATAAACAATA
8293566 AAT
1 AAT
8293569 TATTTTTATT
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
35 30 0.86
36 5 0.14
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (36 bp):
AATATAATATATATGTATAAAGGTAAATAAACAATA
Found at i:8294507 original size:136 final size:132
Alignment explanation
Indices: 8294260--8294565 Score: 325
Period size: 136 Copynumber: 2.3 Consensus size: 132
8294250 ATAAAATATT
** * * * *
8294260 TTTCAAAAAAGGAAAATTTTAAAAAAGGGTAAAAAAGAAATATAAAAAAGTTTGATATAAGTGGG
1 TTTCAAAAAAGGAAAAAGTTAAAAAAGGATAAAAAAGAAATAAAAAAAAGTTTGACATAAATGGG
* *
8294325 TCCCACATATGAAAAATAAAATCTTTTAATATATATTTTTTGTAATTTT--AAAATATATTATTA
66 TCCCACATA-GAAAAATAAAATCTTTTAAAATATATTTTTTATAATTTTAGAAAATAT-TTATTA
8294388 GATA
129 GATA
*
8294392 TTTCTAAAGAAAGGAAAAAGTT-AAAAAGGATAAAAAAGAAATTTAAAAAAGAAAGTTTGGCATA
1 TTTC-AAA-AAAGGAAAAAGTTAAAAAAGGATAAAAAAGAAA--T-AAAAA-AAAGTTTGACATA
*
8294456 AATGGGTCTCCACATA-AAAAATAAAATC-TTTAAAACTCTATTTTTTATAATTTTAGAAAATAT
60 AATGGGTC-CCACATAGAAAAATAAAATCTTTTAAAA-TATATTTTTTATAATTTTAGAAAATAT
8294519 TTATTAGAT-
123 TTATTAGATA
*
8294528 TTT---AAAA--AAAAGGTTAAAAAAGG-TAAAAAA-AAA-AAAAA
1 TTTCAAAAAAGGAAAAAGTTAAAAAAGGATAAAAAAGAAATAAAAA
8294566 GGAAAAAGCA
Statistics
Matches: 152, Mismatches: 11, Indels: 30
0.79 0.06 0.16
Matches are distributed among these distances:
124 5 0.03
128 3 0.02
129 14 0.09
130 7 0.05
131 3 0.02
132 5 0.03
133 21 0.14
134 11 0.07
135 7 0.05
136 35 0.23
137 27 0.18
138 14 0.09
ACGTcount: A:0.53, C:0.05, G:0.11, T:0.31
Consensus pattern (132 bp):
TTTCAAAAAAGGAAAAAGTTAAAAAAGGATAAAAAAGAAATAAAAAAAAGTTTGACATAAATGGG
TCCCACATAGAAAAATAAAATCTTTTAAAATATATTTTTTATAATTTTAGAAAATATTTATTAGA
TA
Found at i:8294979 original size:112 final size:113
Alignment explanation
Indices: 8294863--8295080 Score: 275
Period size: 112 Copynumber: 1.9 Consensus size: 113
8294853 AAGTAAAAGT
* * *
8294863 AAAAAAAAAATTGATATAAGCATATCTCATAC-ATAAAAAATAAAATC-TCT-AAGAATAT-TCA
1 AAAAAAAAAATTGACATAAGCAGATC-C-TACAATAAAAAATAAAATCTTCTAAAAAATATAT-A
*
8294924 TTACTTATAATTTTTAAAAATATTTATTAAA-ATTTTTTTAAAAGAAAAATA
63 TT-CTTATAACTTTTAAAAATATTTATTAAATATTTTTTTAAAAGAAAAATA
** * *
8294975 AAAAAAAAGTTTGACATAAGTAGATCCTACATATAAAAAATAAAATCTTTTAAAAAATATATATT
1 AAAAAAAAAATTGACATAAGCAGATCCTACA-ATAAAAAATAAAATCTTCTAAAAAATATATATT
*
8295040 TTTATAACTTTTAAAAATATTTATTAAATATTTTTTTAAAA
65 CTTATAACTTTTAAAAATATTTATTAAATATTTTTTTAAAA
8295081 AGTGAAAAAA
Statistics
Matches: 91, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
110 3 0.03
111 1 0.01
112 36 0.40
113 28 0.31
114 22 0.24
115 1 0.01
ACGTcount: A:0.52, C:0.06, G:0.04, T:0.38
Consensus pattern (113 bp):
AAAAAAAAAATTGACATAAGCAGATCCTACAATAAAAAATAAAATCTTCTAAAAAATATATATTC
TTATAACTTTTAAAAATATTTATTAAATATTTTTTTAAAAGAAAAATA
Found at i:8295317 original size:2 final size:2
Alignment explanation
Indices: 8295312--8295342 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8295302 ATATCCTTTG
8295312 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8295343 AACTTCACGA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8296062 original size:30 final size:30
Alignment explanation
Indices: 8296028--8296084 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
8296018 GTTCTTAAGT
*
8296028 TTTAATTTATATCTAAATAAACCCTTATCA
1 TTTAATTTATACCTAAATAAACCCTTATCA
* *
8296058 TTTAATTTGTACCTAAATAAATCCTTA
1 TTTAATTTATACCTAAATAAACCCTTA
8296085 ACATAAATCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.44
Consensus pattern (30 bp):
TTTAATTTATACCTAAATAAACCCTTATCA
Found at i:8302461 original size:17 final size:17
Alignment explanation
Indices: 8302439--8302474 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
8302429 ATAAATAAAG
8302439 AAACTATTAAGTGTTAT
1 AAACTATTAAGTGTTAT
8302456 AAACTATTAAGTGTTAT
1 AAACTATTAAGTGTTAT
8302473 AA
1 AA
8302475 TACTCTACTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.44, C:0.06, G:0.11, T:0.39
Consensus pattern (17 bp):
AAACTATTAAGTGTTAT
Found at i:8304210 original size:61 final size:61
Alignment explanation
Indices: 8304066--8304211 Score: 156
Period size: 61 Copynumber: 2.4 Consensus size: 61
8304056 TATAAAGGAT
* * * *
8304066 ATTATAATAATTTTGGTCAATTATGGTAGGAGGAGTATTCTTATAAATATGGTAAGAGGGT
1 ATTATAATAATTTTGGTCAATTATAGTAAGAGGAGCATTCTTATAAATATGGTAAGAGGGC
* * * *
8304127 ATTATAGTAATTTTAGTCAATTATAGTAAGATGG-GCATTTTTTATAATTATGGT-AG-GGAGC
1 ATTATAATAATTTTGGTCAATTATAGTAAGA-GGAGCA-TTCTTATAAATATGGTAAGAGG-GC
8304188 ATTATAATAATTTTGG-CTAATTAT
1 ATTATAATAATTTTGGTC-AATTAT
8304212 GAGAGAAAGG
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
60 3 0.04
61 52 0.73
62 16 0.23
ACGTcount: A:0.34, C:0.04, G:0.21, T:0.41
Consensus pattern (61 bp):
ATTATAATAATTTTGGTCAATTATAGTAAGAGGAGCATTCTTATAAATATGGTAAGAGGGC
Found at i:8304540 original size:128 final size:127
Alignment explanation
Indices: 8304343--8304642 Score: 311
Period size: 128 Copynumber: 2.3 Consensus size: 127
8304333 TATATGTTAT
* * * *
8304343 TTAACATTTAATAAGTAATTTAATAAGGGTATTTTAGTAAATTTCAAACAAAATTCCACATGTCA
1 TTAAAATTTAATAAATAATTTAATAAGAGTATTATAGT-AATTTCAAACAAAATTCCACATGTCA
* * * * * * *
8304408 AATTTTTATGAA-GCAATG-GCAATGGTGTTTTAGTAATTTAAT-AGTAATTAATTTTATATTAT
65 AATTTTTAT-AACACAATGAG-AA-GATATATTAATAATTTAATGAGCAATTAATTTTATAGTAT
8304470 G
127 G
* * **
8304471 TTAAAATTTCATATATAATTTAATAAGAGTATTATAGTAATTTTTAACTAAAATGT-CACATGTC
1 TTAAAATTTAATAAATAATTTAATAAGAGTATTATAGTAATTTCAAAC-AAAAT-TCCACATGTC
* * *
8304535 CAATTTTTATAACACAATGATGAAGATATATTAATAATTTAATGCGCAGTTAATTTTATAGTATG
64 AAATTTTTATAACACAATGA-GAAGATATATTAATAATTTAATGAGCAATTAATTTTATAGTATG
* * * *
8304600 TTAAATTTTAATAAATAATTTAATAGGCGTATTATAATAATTT
1 TTAAAATTTAATAAATAATTTAATAAGAGTATTATAGTAATTT
8304643 ATAAAATTTT
Statistics
Matches: 142, Mismatches: 24, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
127 10 0.07
128 74 0.52
129 57 0.40
130 1 0.01
ACGTcount: A:0.41, C:0.07, G:0.11, T:0.42
Consensus pattern (127 bp):
TTAAAATTTAATAAATAATTTAATAAGAGTATTATAGTAATTTCAAACAAAATTCCACATGTCAA
ATTTTTATAACACAATGAGAAGATATATTAATAATTTAATGAGCAATTAATTTTATAGTATG
Found at i:8304899 original size:60 final size:60
Alignment explanation
Indices: 8304775--8304904 Score: 149
Period size: 60 Copynumber: 2.2 Consensus size: 60
8304765 TAGAAAAGAT
* **
8304775 ATTATAGTAATTTTAGCTAATTATAATAGAAAAGGTATTTCTGTAATTATTGAAAGAGGT
1 ATTATAGTAATTTTAGCTAATTATAATAGAAAAGGTATTTCTGTAATTATGGAAAGAGCC
* * * *
8304835 ATTATAGTAATTTTAGTTAATTATAATAAGAGAA-GTATTTTTG-AATTATGGCCGAA-AGCC
1 ATTATAGTAATTTTAGCTAATTATAAT-AGAAAAGGTATTTCTGTAATTATGG--AAAGAGCC
8304895 ATTATAGTAA
1 ATTATAGTAA
8304905 ATTTGGACAA
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
59 7 0.12
60 46 0.77
61 7 0.12
ACGTcount: A:0.40, C:0.05, G:0.16, T:0.39
Consensus pattern (60 bp):
ATTATAGTAATTTTAGCTAATTATAATAGAAAAGGTATTTCTGTAATTATGGAAAGAGCC
Found at i:8305887 original size:61 final size:62
Alignment explanation
Indices: 8305724--8305897 Score: 167
Period size: 61 Copynumber: 2.8 Consensus size: 62
8305714 TAGCAAGAAT
* * * * ***
8305724 CGTATTATAATAATTTTGGTTAATGATGATAAGAA-GGTATTTTGGTAATTATGATAAAAGA
1 CGTATTATAATAATTTTAGTTAATTATAATAAGAAGGGCATTTCAATAATTATGATAAAAGA
* ** *
8305785 CGTATTATAGTAATTTTAACTAATTA-AGGTAAG-AGGAGCATTTCAATAATTATGATAAAAGA
1 CGTATTATAATAATTTTAGTTAATTATA-ATAAGAAGG-GCATTTCAATAATTATGATAAAAGA
* * *
8305847 -GTATTATAATAATTTTAGTTGATTATAAAAAGAAGGGCATTATCATTAATT
1 CGTATTATAATAATTTTAGTTAATTATAATAAGAAGGGCATT-TCAATAATT
8305898 TAGACACATA
Statistics
Matches: 89, Mismatches: 18, Indels: 11
0.75 0.15 0.09
Matches are distributed among these distances:
60 1 0.01
61 55 0.62
62 33 0.37
ACGTcount: A:0.41, C:0.04, G:0.17, T:0.38
Consensus pattern (62 bp):
CGTATTATAATAATTTTAGTTAATTATAATAAGAAGGGCATTTCAATAATTATGATAAAAGA
Found at i:8311657 original size:2 final size:2
Alignment explanation
Indices: 8311650--8311680 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
8311640 TTCCACCAAA
8311650 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
8311681 GATGGTTTGG
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8320674 original size:2 final size:2
Alignment explanation
Indices: 8320637--8320661 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8320627 TATGGGTATG
8320637 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
8320662 CCTGATAATA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8328139 original size:204 final size:202
Alignment explanation
Indices: 8327774--8328442 Score: 649
Period size: 203 Copynumber: 3.3 Consensus size: 202
8327764 TCACCATAAA
* * * *
8327774 AAATGAAAAAATTTGATATATTAGTGACAAAAGG-AAATCATCATAGTATTAGTGATAAAATTAT
1 AAATGATAAAATTCGATATATTAGTGACAAAAGGTAAATCATCACAGTATT-GTGA-ATAATTAT
* * * * ** * * **
8327838 CATCACCAATGATTGTAAGATAATATTTACTATGACAATAAAATCAAACGTCA-ATT-TATGCAC
64 CGTCACAAATGATTGTAAGATTATGTCAAATGTGACAATAAAATCAAACGTCACATTATATATA-
* *
8327901 TATTTTTTATGACATTAGTTTTTGTCAGCTATTTATGAAAAAAAACGTCATTAAAGGCTATAATT
128 TATTTTTTATGACGTTAGTTTTTGTCAGCTATTTATGAAAAAAAACGTCATTAAAGGCTATAATC
8327966 GTCACAAAAG
193 GTCACAAAAG
* * *
8327976 AAATGATAAAATTCGATATATTAGTAACAAAAGGTAAATCATCGCAATATTGGTGACATAATTAT
1 AAATGATAAAATTCGATATATTAGTGACAAAAGGTAAATCATCACAGTATT-GTGA-ATAATTAT
* ** * *
8328041 TGTCACAAATGATTACAAGATTATGTCAAATGTGACAATAAAATCAAATGTCACCTTATATATAT
64 CGTCACAAATGATTGTAAGATTATGTCAAATGTGACAATAAAATCAAACGTCACATTATATATAT
* * * * *
8328106 ATTTTTTATGACGTTAGTTTTTGTGAACTATTTAT-AAAGAAAAACATCATTGAAGGTTATAATC
129 ATTTTTTATGACGTTAGTTTTTGTCAGCTATTTATGAAA-AAAAACGTCATTAAAGGCTATAATC
*
8328170 GTCACAAAAT
193 GTCACAAAAG
* * *
8328180 AAATGATAAAA-TCTGATATATTAATGACAAAAGATAAATGATCACAGTATTGT-AATGCAATTA
1 AAATGATAAAATTC-GATATATTAGTGACAAAAGGTAAATCATCACAGTATTGTGAAT--AATTA
* * * *
8328243 TCGTCACAAATGATTGTAAG-TTAACGTCAAACGTGACAATAAAATCAAACGTCACATTATGCTT
63 TCGTCACAAATGATTGTAAGATT-ATGTCAAATGTGACAATAAAATCAAACGTCACATTAT-ATA
* * ** * *
8328307 TAT-TTTTTTGTGATGTTAGTTTTCATTAGCTATTTATG--AAAAAATGTCATTAAAGGCTATAA
126 TATATTTTTTATGACGTTAGTTTTTGTCAGCTATTTATGAAAAAAAACGTCATTAAAGGCTATAA
** *
8328369 TCACCACAAAAT
191 TCGTCACAAAAG
* * * ** ** *
8328381 AAGTAATTAAA-TCTGATATATTAGTGATTAAAGGTAAATTGTCATAGTATTGATGACATAAT
1 AAATGATAAAATTC-GATATATTAGTGACAAAAGGTAAATCATCACAGTATTG-TGA-ATAAT
8328443 CAACGTCATT
Statistics
Matches: 385, Mismatches: 69, Indels: 26
0.80 0.14 0.05
Matches are distributed among these distances:
201 73 0.19
202 39 0.10
203 156 0.41
204 113 0.29
205 4 0.01
ACGTcount: A:0.42, C:0.11, G:0.13, T:0.34
Consensus pattern (202 bp):
AAATGATAAAATTCGATATATTAGTGACAAAAGGTAAATCATCACAGTATTGTGAATAATTATCG
TCACAAATGATTGTAAGATTATGTCAAATGTGACAATAAAATCAAACGTCACATTATATATATAT
TTTTTATGACGTTAGTTTTTGTCAGCTATTTATGAAAAAAAACGTCATTAAAGGCTATAATCGTC
ACAAAAG
Found at i:8328998 original size:36 final size:35
Alignment explanation
Indices: 8328950--8329022 Score: 101
Period size: 36 Copynumber: 2.1 Consensus size: 35
8328940 CTTAAAATTC
* *
8328950 TTTTTTAGAAAAGACAGAATAATTTTTTATTTTTT
1 TTTTTTAAAAAAGACAGAATAATTTTTTACTTTTT
* *
8328985 TTTTTTGAAAAAAGATAGAATAATTTTTTCCTTTTT
1 TTTTTT-AAAAAAGACAGAATAATTTTTTACTTTTT
8329021 TT
1 TT
8329023 CTAAAAATAA
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
35 6 0.18
36 27 0.82
ACGTcount: A:0.33, C:0.04, G:0.08, T:0.55
Consensus pattern (35 bp):
TTTTTTAAAAAAGACAGAATAATTTTTTACTTTTT
Found at i:8330463 original size:178 final size:178
Alignment explanation
Indices: 8330258--8330636 Score: 449
Period size: 178 Copynumber: 2.1 Consensus size: 178
8330248 TGGTCAGGAT
* * * * *
8330258 GAAACCATGAATCATGTGACCGGAACGAAACCACCAGTCGAAATAAAGTGACTAGGATCGAA-TC
1 GAAACCATGAATCATGTGATCGGAACGAAACCACAAGTAGAAATAAAGTGACCAGGA-CCAAGTC
** * * * * *
8330322 AAGGTCGAAAATGAATGATCGAGACGAAACCATAAATCATGTGACTGGGATGAAACCATGAGTCA
65 AAGGTAAAAAATGAATGATCAAGACAAAACCACAAATCATGTGACCGGGATGAAACCACGAGTCA
* * *
8330387 AAATAAAATGACCA-AGA-CTGAGTCGAGGTAAAAAATGAATGACCAAAAC
130 AAATAAAATGACCATA-ATC-GAGTCAAGATAAAAAATGAATAACCAAAAC
* * * * *
8330436 GAAACCATGAATCATGTGATTGGAACGAAATCACAAGTATAAATAAAGTGACCATGACCAAGTCT
1 GAAACCATGAATCATGTGATCGGAACGAAACCACAAGTAGAAATAAAGTGACCAGGACCAAGTCA
* * *
8330501 AGGTAAAAAATGAATGATCAAGACAAAATCACGAATCATGTGACCGGGATGAAACCACGGGTCAA
66 AGGTAAAAAATGAATGATCAAGACAAAACCACAAATCATGTGACCGGGATGAAACCACGAGTCAA
* * * * * *
8330566 AATAAAATGATCATAATCGAGTTAAGATAAAAAATGAATAATCGAGAT
131 AATAAAATGACCATAATCGAGTCAAGATAAAAAATGAATAACCAAAAC
8330614 GAAACCATGAATCATGTGATCGG
1 GAAACCATGAATCATGTGATCGG
8330637 GATGAAATTA
Statistics
Matches: 168, Mismatches: 30, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
177 3 0.02
178 163 0.97
179 2 0.01
ACGTcount: A:0.45, C:0.16, G:0.21, T:0.18
Consensus pattern (178 bp):
GAAACCATGAATCATGTGATCGGAACGAAACCACAAGTAGAAATAAAGTGACCAGGACCAAGTCA
AGGTAAAAAATGAATGATCAAGACAAAACCACAAATCATGTGACCGGGATGAAACCACGAGTCAA
AATAAAATGACCATAATCGAGTCAAGATAAAAAATGAATAACCAAAAC
Found at i:8330638 original size:89 final size:90
Alignment explanation
Indices: 8330241--8330643 Score: 379
Period size: 89 Copynumber: 4.5 Consensus size: 90
8330231 TTGAGATAAG
* * * * * * * *
8330241 AAATGAATGGTCAGGATGAAACCATGAATCATGTGACCGGAACGAAACCACCAGTCGAAATAAAG
1 AAATGAATGATCAAGACGAAACCATGAATCATGTGACCGGGATGAAACCACGAGTCAAAATAAAA
* **
8330306 TGA-C-TAGGATCGAATCAAGGTCGA
66 TGACCATA-GATCGAGTCAAGGTAAA
* * * *
8330330 AAATGAATGATCGAGACGAAACCATAAATCATGTGACTGGGATGAAACCATGAGTCAAAATAAAA
1 AAATGAATGATCAAGACGAAACCATGAATCATGTGACCGGGATGAAACCACGAGTCAAAATAAAA
*
8330395 TGACCA-AGA-CTGAGTCGAGGTAAA
66 TGACCATAGATC-GAGTCAAGGTAAA
* * ** * * * *
8330419 AAATGAATGACCAAAACGAAACCATGAATCATGTGATTGGAACGAAATCACAAGT-ATAAATAAA
1 AAATGAATGATCAAGACGAAACCATGAATCATGTGACCGGGATGAAACCACGAGTCA-AAATAAA
* * * *
8330483 GTGACCAT-GACCAAGTCTAGGTAAA
65 ATGACCATAGATCGAGTCAAGGTAAA
* * * *
8330508 AAATGAATGATCAAGACAAAATCACGAATCATGTGACCGGGATGAAACCACGGGTCAAAATAAAA
1 AAATGAATGATCAAGACGAAACCATGAATCATGTGACCGGGATGAAACCACGAGTCAAAATAAAA
* * *
8330573 TGATCATA-ATCGAGTTAAGATAAA
66 TGACCATAGATCGAGTCAAGGTAAA
* * * *
8330597 AAATGAATAATCGAGATGAAACCATGAATCATGTGATCGGGATGAAA
1 AAATGAATGATCAAGACGAAACCATGAATCATGTGACCGGGATGAAA
8330644 TTAGAAATCA
Statistics
Matches: 251, Mismatches: 55, Indels: 16
0.78 0.17 0.05
Matches are distributed among these distances:
88 2 0.01
89 245 0.98
90 4 0.02
ACGTcount: A:0.45, C:0.15, G:0.21, T:0.19
Consensus pattern (90 bp):
AAATGAATGATCAAGACGAAACCATGAATCATGTGACCGGGATGAAACCACGAGTCAAAATAAAA
TGACCATAGATCGAGTCAAGGTAAA
Found at i:8330642 original size:26 final size:26
Alignment explanation
Indices: 8330606--8330664 Score: 75
Period size: 26 Copynumber: 2.3 Consensus size: 26
8330596 AAAATGAATA
8330606 ATCGAGATGAAACCATG-AATCATGTG
1 ATCGAGATGAAACCA-GAAATCATGTG
* **
8330632 ATCGGGATGAAATTAGAAATCATGTG
1 ATCGAGATGAAACCAGAAATCATGTG
8330658 ATCGAGA
1 ATCGAGA
8330665 CAAAACCACA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
25 1 0.04
26 27 0.96
ACGTcount: A:0.39, C:0.12, G:0.25, T:0.24
Consensus pattern (26 bp):
ATCGAGATGAAACCAGAAATCATGTG
Found at i:8330716 original size:204 final size:204
Alignment explanation
Indices: 8330445--8330836 Score: 507
Period size: 204 Copynumber: 1.9 Consensus size: 204
8330435 CGAAACCATG
* * * * ** *
8330445 AATCATGTGATTGGAACGAAATCACAAGTATAAATAAAGTGACCATGACCAAGTCTAGGTAAAAA
1 AATCATGTGATCGGAACAAAACCACAAGTAGAAATAAAGCAACCATGACCAAGTCGAGGTAAAAA
*
8330510 ATGAATGATCAAGACAAAATCACGAATCATGTGACCGGGATGAAACCACGGGTCAAAATAAAATG
66 ATGAATGATCAAGACAAAATCACGAATCATGTGACCGAGATGAAACCACGGGTCAAAATAAAATG
* * * *
8330575 ATCATAATCGAGTTAAGATAAAAAATGAATAATCGAGATGAAACCATGAATCATGTGATCGGGAT
131 ATCAGAATCGAGTCAAGATAAAAAATAAATAATCAAGATGAAACCATGAATCATGTGATCGGGAT
8330640 GAAATTAGA
196 GAAATTAGA
* * *
8330649 AATCATGTGATC-GAGACAAAACCACAAGTCGAAATAAAGCAACCATGATCGAGTCGAGGTAAAA
1 AATCATGTGATCGGA-ACAAAACCACAAGTAGAAATAAAGCAACCATGACCAAGTCGAGGTAAAA
* *** * * **
8330713 AATGAATGATCAGGATGGAATCATGAATCATGTGATCGAGATGAAACCACGGGTTGAAATAAAAT
65 AATGAATGATCAAGACAAAATCACGAATCATGTGACCGAGATGAAACCACGGGTCAAAATAAAAT
* * ** * *
8330778 GATCAGGATCGAGTCAAGGTCGAAAATAAATTATTAAGATGAAACCATGAATCATGTGA
130 GATCAGAATCGAGTCAAGATAAAAAATAAATAATCAAGATGAAACCATGAATCATGTGA
8330837 CTGAGATAAA
Statistics
Matches: 158, Mismatches: 29, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
203 2 0.01
204 156 0.99
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.21
Consensus pattern (204 bp):
AATCATGTGATCGGAACAAAACCACAAGTAGAAATAAAGCAACCATGACCAAGTCGAGGTAAAAA
ATGAATGATCAAGACAAAATCACGAATCATGTGACCGAGATGAAACCACGGGTCAAAATAAAATG
ATCAGAATCGAGTCAAGATAAAAAATAAATAATCAAGATGAAACCATGAATCATGTGATCGGGAT
GAAATTAGA
Found at i:8330723 original size:89 final size:89
Alignment explanation
Indices: 8330630--8331007 Score: 368
Period size: 89 Copynumber: 4.2 Consensus size: 89
8330620 ATGAATCATG
* * * * *
8330630 TGATCGGGATGAAATTA-GAAATCATGTGATCGAGACAAAACCACAAGTCGAAATAAAGCAACCA
1 TGATCAGGATGAAATCATG-AATCATGTGATCGAGATAAAACCACGAGTCGAAATAAAGTAACCA
* * *
8330694 TGATCGAGTCGAGGTAAAAAATGAA
65 GGATCGAGTCGAGGTCAAAAATAAA
* * * * * * *
8330719 TGATCAGGATGGAATCATGAATCATGTGATCGAGATGAAACCACGGGTTGAAATAAAATGATCAG
1 TGATCAGGATGAAATCATGAATCATGTGATCGAGATAAAACCACGAGTCGAAATAAAGTAACCAG
* *
8330784 GATCGAGTCAAGGTCGAAAATAAA
66 GATCGAGTCGAGGTCAAAAATAAA
* * * * * * * *
8330808 TTATTAAGATGAAACCATGAATCATGTGA-CTGAGATAAAATCACGAGTCAAAATAAAGTGATCA
1 TGATCAGGATGAAATCATGAATCATGTGATC-GAGATAAAACCACGAGTCGAAATAAAGTAACCA
*
8330872 GGATCGAGTCGAGGTCAAAAATGAA
65 GGATCGAGTCGAGGTCAAAAATAAA
* ** * * *
8330897 TGATCAGGATGAAACCACAAATCATGTGACTCG-GATAAAATCACGATTTGAAATAAAGTAACCA
1 TGATCAGGATGAAATCATGAATCATGTGA-TCGAGATAAAACCACGAGTCGAAATAAAGTAACCA
* *
8330961 AGA-CTGAGTCGAGGTCAAGAATAAA
65 GGATC-GAGTCGAGGTCAAAAATAAA
* *
8330986 TGATCGGGATAAAATCATGAAT
1 TGATCAGGATGAAATCATGAAT
8331008 TATAAGAAAT
Statistics
Matches: 235, Mismatches: 49, Indels: 10
0.80 0.17 0.03
Matches are distributed among these distances:
88 2 0.01
89 230 0.98
90 2 0.01
91 1 0.00
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.21
Consensus pattern (89 bp):
TGATCAGGATGAAATCATGAATCATGTGATCGAGATAAAACCACGAGTCGAAATAAAGTAACCAG
GATCGAGTCGAGGTCAAAAATAAA
Found at i:8331007 original size:178 final size:178
Alignment explanation
Indices: 8330630--8331007 Score: 415
Period size: 178 Copynumber: 2.1 Consensus size: 178
8330620 ATGAATCATG
* *
8330630 TGATCGGGATGAAATTA-GAAATCATGTGATCGAGACAAAACCACAAGTCGAAATAAAGCAACCA
1 TGATCGGGATGAAATCATG-AATCATGTGATCGAGACAAAACCACAAGTCAAAATAAAGCAACCA
* * * ** *
8330694 TGATCGAGTCGAGGTAAAAAATGAATGATCAGGATGGAATCATGAATCATGTGATCGAGATGAAA
65 GGATCGAGTCGAGGTAAAAAATGAATGATCAGGATGAAACCACAAATCATGTGATCGAGATAAAA
* * * *
8330759 CCACGGGTTGAAATAAAATGATCAGGATCGAGTCAAGGTCGAAAATAAA
130 CCACGAGTTGAAATAAAATAACCAAGATCGAGTCAAGGTCGAAAATAAA
* *** * * * * ** *
8330808 TTATTAAGATGAAACCATGAATCATGTGA-CTGAGATAAAATCACGAGTCAAAATAAAGTGATCA
1 TGATCGGGATGAAATCATGAATCATGTGATC-GAGACAAAACCACAAGTCAAAATAAAGCAACCA
*
8330872 GGATCGAGTCGAGGTCAAAAATGAATGATCAGGATGAAACCACAAATCATGTGACTCG-GATAAA
65 GGATCGAGTCGAGGTAAAAAATGAATGATCAGGATGAAACCACAAATCATGTGA-TCGAGATAAA
* * * *
8330936 ATCACGATTTGAAATAAAGTAACCAAGA-CTGAGTCGAGGTC-AAGAATAAA
129 ACCACGAGTTGAAATAAAATAACCAAGATC-GAGTCAAGGTCGAA-AATAAA
*
8330986 TGATCGGGATAAAATCATGAAT
1 TGATCGGGATGAAATCATGAAT
8331008 TATAAGAAAT
Statistics
Matches: 161, Mismatches: 34, Indels: 10
0.79 0.17 0.05
Matches are distributed among these distances:
177 4 0.02
178 153 0.95
179 4 0.02
ACGTcount: A:0.43, C:0.13, G:0.22, T:0.21
Consensus pattern (178 bp):
TGATCGGGATGAAATCATGAATCATGTGATCGAGACAAAACCACAAGTCAAAATAAAGCAACCAG
GATCGAGTCGAGGTAAAAAATGAATGATCAGGATGAAACCACAAATCATGTGATCGAGATAAAAC
CACGAGTTGAAATAAAATAACCAAGATCGAGTCAAGGTCGAAAATAAA
Found at i:8342007 original size:16 final size:16
Alignment explanation
Indices: 8341986--8342017 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
8341976 ATTTCCCCCC
8341986 TTTTTTTTTCTTAGAA
1 TTTTTTTTTCTTAGAA
*
8342002 TTTTTTTTTTTTAGAA
1 TTTTTTTTTCTTAGAA
8342018 AAGATAGAAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.72
Consensus pattern (16 bp):
TTTTTTTTTCTTAGAA
Found at i:8342057 original size:37 final size:36
Alignment explanation
Indices: 8342002--8342073 Score: 126
Period size: 37 Copynumber: 2.0 Consensus size: 36
8341992 TTTCTTAGAA
8342002 TTTTTTTTTTTTAGAAAAGATAGAATAATTTTTTTC
1 TTTTTTTTTTTTAGAAAAGATAGAATAATTTTTTTC
*
8342038 TTTTTTTTTTTTTGAAAAAGATAGAATAATTTTTTT
1 TTTTTTTTTTTTAG-AAAAGATAGAATAATTTTTTT
8342074 TTTAAATCAA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
36 13 0.38
37 21 0.62
ACGTcount: A:0.31, C:0.01, G:0.08, T:0.60
Consensus pattern (36 bp):
TTTTTTTTTTTTAGAAAAGATAGAATAATTTTTTTC
Found at i:8343071 original size:25 final size:25
Alignment explanation
Indices: 8343037--8343094 Score: 116
Period size: 25 Copynumber: 2.3 Consensus size: 25
8343027 ATTGGACCTC
8343037 AATGGGCCAGAACGGCCTGAACGAG
1 AATGGGCCAGAACGGCCTGAACGAG
8343062 AATGGGCCAGAACGGCCTGAACGAG
1 AATGGGCCAGAACGGCCTGAACGAG
8343087 AATGGGCC
1 AATGGGCC
8343095 TAGTTGGGCT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.36, T:0.09
Consensus pattern (25 bp):
AATGGGCCAGAACGGCCTGAACGAG
Found at i:8347156 original size:237 final size:234
Alignment explanation
Indices: 8346490--8347339 Score: 976
Period size: 237 Copynumber: 3.6 Consensus size: 234
8346480 ACCTAAAAAA
* * * * *
8346490 TAAAAGTTTATCACATTTATGTTATCATCATATAACATCAAATATTAATGTGACGAAATCT-TAA
1 TAAAAGTTTGTGACATTTATGTTATCATCATATAACACCATATATTAATGTGACGAAAT-TGCAA
* * * * * * * *
8346554 TGTTATTAGTAGTTAACTAAAATATTCAATTTGTGACAAAAATGAATAACATCACTTAAAATTTA
65 TGTCATTAATAGTTAACTAAAATATTCAATTTATAACAAAAATTAATAACGTCACCTAAAATCTA
* * * * * *
8346619 TCAGAAAAAATTCATTACAAATAAAATTTTAAATTTGTAACAAAATTATAACATCACCT-AAATA
130 TCAGAAAAAATTCGTCACAGATAAAATTTTAAATTAGTGACAAAATTA-AACATCATCTAAAATA
** * **
8346683 AAAAATGTCATAAAAAAATTTTTCATCAAATAAATTTGGTGG
194 AAAAAAATCAT-AAAAAATTTTTCACCAAATAAATTTGACGG
* * *
8346725 TAAAAGATTGTGACATTTAAGTTATCATCATATAACACCATATATTAACGTGACGAAATTGCAAT
1 TAAAAGTTTGTGACATTTATGTTATCATCATATAACACCATATATTAATGTGACGAAATTGCAAT
* * *
8346790 GTCATTGATAGTTAACTAAAGTAGTT-AATTTATAACAAAAATTAATTACGTCACCTAAAATCTA
66 GTCATTAATAGTTAACTAAAATA-TTCAATTTATAACAAAAATTAATAACGTCACCTAAAATCTA
* * **
8346854 TCAGAAAAAATTAGTCACAGATAAAAATTTTAAATTAGTGACAAAATTATA-ATGTTACTTAAAA
130 TCAGAAAAAATTCGTCACAGAT-AAAATTTTAAATTAGTGACAAAATTAAACATCAT-C-TAAAA
* * * *
8346918 TAAAAAACATCACAAATAAATTTTTCACCAAATAAAATTGACAG
192 TAAAAAAAATCATAAA-AAATTTTTCACCAAATAAATTTGACGG
* * * * * *
8346962 TAAAAGTTTGTGATATTTATGTTATCATCATATAATACCATAAAATAAAGGTGACGAACTTGCAA
1 TAAAAGTTTGTGACATTTATGTTATCATCATATAACACCAT-ATATTAATGTGACGAAATTGCAA
* * * * *
8347027 TGTTATTAATAGTTAACTAAAATGTTTC-ATTTGTGATAAAAATTGAA-AACGTCACCTAAAATC
65 TGTCATTAATAGTTAACTAAAAT-ATTCAATTTATAACAAAAATT-AATAACGTCACCTAAAATC
* *
8347090 TATTAGAAAAAATTCGTCACAGATAAAATTTTAAATTAGTGATAAAATTTAAACATCATCTAAAA
128 TATCAGAAAAAATTCGTCACAGATAAAATTTTAAATTAGTGACAAAA-TTAAACATCATCTAAAA
8347155 TAAAAAAAAAGTCATAAAAAA-TTTTCACCAAATAAATTTGACGG
192 T-AAAAAAAA-TCATAAAAAATTTTTCACCAAATAAATTTGACGG
* * * * **
8347199 TAAAAGTTTGTGACATTTATATTATCATCATATATCACCATACATTGATGTGAAAAAATTGCAAT
1 TAAAAGTTTGTGACATTTATGTTATCATCATATAACACCATATATTAATGTGACGAAATTGCAAT
* *
8347264 GTCATTAATAGTTAACTAAAATATTCAATTTATAACAAAAATTAATAACGTTACTTAAAATCTAT
66 GTCATTAATAGTTAACTAAAATATTCAATTTATAACAAAAATTAATAACGTCACCTAAAATCTAT
* *
8347329 TAGATAAAATT
131 CAGAAAAAATT
8347340 TTAAATTGGT
Statistics
Matches: 516, Mismatches: 82, Indels: 33
0.82 0.13 0.05
Matches are distributed among these distances:
234 3 0.01
235 130 0.25
236 108 0.21
237 158 0.31
238 106 0.21
239 11 0.02
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.34
Consensus pattern (234 bp):
TAAAAGTTTGTGACATTTATGTTATCATCATATAACACCATATATTAATGTGACGAAATTGCAAT
GTCATTAATAGTTAACTAAAATATTCAATTTATAACAAAAATTAATAACGTCACCTAAAATCTAT
CAGAAAAAATTCGTCACAGATAAAATTTTAAATTAGTGACAAAATTAAACATCATCTAAAATAAA
AAAAATCATAAAAAATTTTTCACCAAATAAATTTGACGG
Found at i:8368002 original size:7 final size:7
Alignment explanation
Indices: 8367990--8368014 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
8367980 AGCCTTCACC
8367990 GGTCAGT
1 GGTCAGT
8367997 GGTCAGT
1 GGTCAGT
8368004 GGTCAGT
1 GGTCAGT
8368011 GGTC
1 GGTC
8368015 CCTGCTTCAC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.12, C:0.16, G:0.44, T:0.28
Consensus pattern (7 bp):
GGTCAGT
Found at i:8368301 original size:25 final size:24
Alignment explanation
Indices: 8368243--8368332 Score: 73
Period size: 25 Copynumber: 3.8 Consensus size: 24
8368233 TCCGATTTGA
*
8368243 TATT-TATAAAATTATT-TTTA-AT
1 TATTATATAATATT-TTATTTATAT
*
8368265 TAATTATTTAATATTTTATTTATAT
1 T-ATTATATAATATTTTATTTATAT
8368290 ATATTATATAAT-TTTATATTTATAT
1 -TATTATATAATATTT-TATTTATAT
* *
8368315 T-TTAAAAAATATTTTATT
1 TATTATATAATATTTTATT
8368333 AATTTTAAGA
Statistics
Matches: 56, Mismatches: 5, Indels: 13
0.76 0.07 0.18
Matches are distributed among these distances:
22 1 0.02
23 16 0.29
24 18 0.32
25 20 0.36
26 1 0.02
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (24 bp):
TATTATATAATATTTTATTTATAT
Found at i:8368332 original size:23 final size:23
Alignment explanation
Indices: 8368274--8368340 Score: 68
Period size: 25 Copynumber: 2.9 Consensus size: 23
8368264 TTAATTATTT
* *
8368274 AATATTTTATTTATATATATTATAT
1 AATATTTTATTTATAT-T-TTAAAA
8368299 AAT-TTTATATTTATATTTTAAAA
1 AATATTT-TATTTATATTTTAAAA
8368322 AATATTTTA-TTA-ATTTTAA
1 AATATTTTATTTATATTTTAA
8368341 GATCGAATAT
Statistics
Matches: 38, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
21 7 0.18
22 3 0.08
23 9 0.24
24 7 0.18
25 12 0.32
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
AATATTTTATTTATATTTTAAAA
Found at i:8368396 original size:22 final size:21
Alignment explanation
Indices: 8368370--8368410 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
8368360 ATATCAAATT
* *
8368370 AAATTGAATTCAAATATGAAAA
1 AAATTCAAATCAAAT-TGAAAA
8368392 AAATTCAAATCAAATTGAA
1 AAATTCAAATCAAATTGAA
8368411 TTTGAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (21 bp):
AAATTCAAATCAAATTGAAAA
Found at i:8368425 original size:33 final size:33
Alignment explanation
Indices: 8368363--8368426 Score: 83
Period size: 33 Copynumber: 1.9 Consensus size: 33
8368353 TTATATAATA
* **
8368363 TCAAATTAAATTGAATTCAAATATGAAAAAAAT
1 TCAAATCAAATTGAATTCAAATAAAAAAAAAAT
**
8368396 TCAAATCAAATTGAATTTGAATAAAAAAAAA
1 TCAAATCAAATTGAATTCAAATAAAAAAAAA
8368427 TAAAAAATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
33 26 1.00
ACGTcount: A:0.59, C:0.06, G:0.06, T:0.28
Consensus pattern (33 bp):
TCAAATCAAATTGAATTCAAATAAAAAAAAAAT
Found at i:8374875 original size:2 final size:2
Alignment explanation
Indices: 8374868--8374892 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
8374858 AAATGACAGC
8374868 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
8374893 CGCATTCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:8379719 original size:21 final size:22
Alignment explanation
Indices: 8379685--8379742 Score: 64
Period size: 21 Copynumber: 2.6 Consensus size: 22
8379675 TATGGTACAC
*
8379685 AAAATTATAATAT-AATAAAAT
1 AAAATAATAATATAAATAAAAT
*
8379706 AAAATAATATTATAAATAAAATT
1 AAAATAATAATATAAATAAAA-T
*
8379729 AAATTAAATAATAT
1 AAAAT-AATAATAT
8379743 TATTATATTT
Statistics
Matches: 30, Mismatches: 4, Indels: 3
0.81 0.11 0.08
Matches are distributed among these distances:
21 11 0.37
22 7 0.23
23 5 0.17
24 7 0.23
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (22 bp):
AAAATAATAATATAAATAAAAT
Found at i:8379734 original size:17 final size:17
Alignment explanation
Indices: 8379691--8379727 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
8379681 ACACAAAATT
*
8379691 ATAATATAATAAAATAAA
1 ATAATATTAT-AAATAAA
8379709 ATAATATTATAAATAAA
1 ATAATATTATAAATAAA
8379726 AT
1 AT
8379728 TAAATTAAAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 9 0.50
18 9 0.50
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (17 bp):
ATAATATTATAAATAAA
Found at i:8379850 original size:18 final size:20
Alignment explanation
Indices: 8379827--8379865 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
8379817 TAAAGTTTGA
8379827 ATAA-TTTAAATAAT-TAAT
1 ATAATTTTAAATAATATAAT
*
8379845 ATAATTTTTAATAATATAAT
1 ATAATTTTAAATAATATAAT
8379865 A
1 A
8379866 GATAGTAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 9 0.50
20 5 0.28
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (20 bp):
ATAATTTTAAATAATATAAT
Found at i:8381418 original size:16 final size:16
Alignment explanation
Indices: 8381399--8381435 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
8381389 GGCAAGTAAA
*
8381399 ATATTTTTACTTTTAT
1 ATATTTTTAATTTTAT
*
8381415 ATATTTTTAATTTTTT
1 ATATTTTTAATTTTAT
8381431 ATATT
1 ATATT
8381436 GTATACATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.27, C:0.03, G:0.00, T:0.70
Consensus pattern (16 bp):
ATATTTTTAATTTTAT
Found at i:8381624 original size:21 final size:21
Alignment explanation
Indices: 8381599--8381639 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
8381589 ATAATTTTTT
*
8381599 TATAAATATATATA-TTTTAAA
1 TATAAAAATAT-TAGTTTTAAA
8381620 TATAAAAATATTAGTTTTAA
1 TATAAAAATATTAGTTTTAA
8381640 TTAATCTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 2 0.11
21 16 0.89
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.46
Consensus pattern (21 bp):
TATAAAAATATTAGTTTTAAA
Found at i:8381670 original size:19 final size:19
Alignment explanation
Indices: 8381636--8381691 Score: 69
Period size: 19 Copynumber: 2.9 Consensus size: 19
8381626 AATATTAGTT
*
8381636 TTAATTAATCTAAAT-AAAA
1 TTAATTTAT-TAAATAAAAA
*
8381655 TTTATATTATTAAATAAAAA
1 TTAAT-TTATTAAATAAAAA
8381675 TTAATTTATTAAATAAA
1 TTAATTTATTAAATAAA
8381692 TAAAGTATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
19 21 0.66
20 11 0.34
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (19 bp):
TTAATTTATTAAATAAAAA
Found at i:8384355 original size:9 final size:9
Alignment explanation
Indices: 8384341--8384373 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
8384331 CCTCCCACAC
8384341 AAAAAAAAG
1 AAAAAAAAG
8384350 AAAAAAAAG
1 AAAAAAAAG
*
8384359 AAAAAGAA-
1 AAAAAAAAG
8384367 AAAAAAA
1 AAAAAAA
8384374 GGGTAAAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
8 6 0.27
9 16 0.73
ACGTcount: A:0.91, C:0.00, G:0.09, T:0.00
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:8384364 original size:15 final size:15
Alignment explanation
Indices: 8384344--8384372 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
8384334 CCCACACAAA
8384344 AAAAAGAAAAAAAAG
1 AAAAAGAAAAAAAAG
8384359 AAAAAGAAAAAAAA
1 AAAAAGAAAAAAAA
8384373 AGGGTAAAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (15 bp):
AAAAAGAAAAAAAAG
Found at i:8389819 original size:2 final size:2
Alignment explanation
Indices: 8389812--8389859 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
8389802 TTTAGTACCT
8389812 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
8389854 TC TC TC
1 TC TC TC
8389860 ATAAATAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:8393996 original size:19 final size:20
Alignment explanation
Indices: 8393974--8394012 Score: 71
Period size: 19 Copynumber: 2.0 Consensus size: 20
8393964 ACACATAATT
8393974 TTAAAAATAT-ATTTAAAAA
1 TTAAAAATATAATTTAAAAA
8393993 TTAAAAATATAATTTAAAAA
1 TTAAAAATATAATTTAAAAA
8394013 GCGAAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 10 0.53
20 9 0.47
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (20 bp):
TTAAAAATATAATTTAAAAA
Found at i:8395458 original size:15 final size:15
Alignment explanation
Indices: 8395418--8395452 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
8395408 ATCAATAAAC
*
8395418 ATTTTAAATCTATTT
1 ATTTTAAATTTATTT
8395433 ATTTTAAATTTATTT
1 ATTTTAAATTTATTT
8395448 ATTTT
1 ATTTT
8395453 TTATTTTTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (15 bp):
ATTTTAAATTTATTT
Found at i:8395961 original size:10 final size:10
Alignment explanation
Indices: 8395948--8395989 Score: 52
Period size: 10 Copynumber: 4.3 Consensus size: 10
8395938 TCGAATTGAA
8395948 TTATATATTT
1 TTATATATTT
8395958 TTAT-TAATTT
1 TTATAT-ATTT
8395968 TTATATATTT
1 TTATATATTT
*
8395978 TT-TAAATTT
1 TTATATATTT
8395987 TTA
1 TTA
8395990 AAAAATAAAA
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
9 9 0.32
10 18 0.64
11 1 0.04
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (10 bp):
TTATATATTT
Found at i:8395973 original size:20 final size:19
Alignment explanation
Indices: 8395948--8395989 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
8395938 TCGAATTGAA
*
8395948 TTATATATTTTTATTAATTT
1 TTATATATTTTT-TAAATTT
8395968 TTATATATTTTTTAAATTT
1 TTATATATTTTTTAAATTT
8395987 TTA
1 TTA
8395990 AAAAATAAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 9 0.43
20 12 0.57
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (19 bp):
TTATATATTTTTTAAATTT
Found at i:8395982 original size:18 final size:21
Alignment explanation
Indices: 8395948--8395989 Score: 63
Period size: 19 Copynumber: 2.1 Consensus size: 21
8395938 TCGAATTGAA
8395948 TTATATATTTTTATT-AATTT
1 TTATATATTTTTATTAAATTT
8395968 TTATATA-TTTT-TTAAATTT
1 TTATATATTTTTATTAAATTT
8395987 TTA
1 TTA
8395990 AAAAATAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 2 0.10
19 12 0.57
20 7 0.33
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (21 bp):
TTATATATTTTTATTAAATTT
Found at i:8396059 original size:15 final size:13
Alignment explanation
Indices: 8396027--8396067 Score: 73
Period size: 13 Copynumber: 3.2 Consensus size: 13
8396017 AAACCATTTA
8396027 AATATATTAAAAT
1 AATATATTAAAAT
8396040 AATATATTAAAAT
1 AATATATTAAAAT
*
8396053 AATATATAAAAAT
1 AATATATTAAAAT
8396066 AA
1 AA
8396068 AATTTGAGAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (13 bp):
AATATATTAAAAT
Found at i:8396618 original size:1 final size:1
Alignment explanation
Indices: 8396614--8396644 Score: 62
Period size: 1 Copynumber: 31.0 Consensus size: 1
8396604 CGGCGATCAG
8396614 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8396645 CCAAATATAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:8402344 original size:11 final size:11
Alignment explanation
Indices: 8402328--8402361 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
8402318 CGTAAGTTTT
8402328 ATATCCAAACA
1 ATATCCAAACA
*
8402339 ATATCCAAATA
1 ATATCCAAACA
8402350 ATATCCAAACA
1 ATATCCAAACA
8402361 A
1 A
8402362 GCCAAAATCA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.56, C:0.24, G:0.00, T:0.21
Consensus pattern (11 bp):
ATATCCAAACA
Found at i:8404201 original size:19 final size:18
Alignment explanation
Indices: 8404169--8404212 Score: 52
Period size: 19 Copynumber: 2.4 Consensus size: 18
8404159 TGAATAACAC
**
8404169 ATTTTTTTTTATTATTGAT
1 ATTTTTTTAAATTATT-AT
*
8404188 ATTTTTTTAAATTATTTT
1 ATTTTTTTAAATTATTAT
8404206 ATTTTTT
1 ATTTTTT
8404213 AACTAATTTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 8 0.36
19 14 0.64
ACGTcount: A:0.23, C:0.00, G:0.02, T:0.75
Consensus pattern (18 bp):
ATTTTTTTAAATTATTAT
Found at i:8420435 original size:23 final size:25
Alignment explanation
Indices: 8420394--8420444 Score: 70
Period size: 24 Copynumber: 2.1 Consensus size: 25
8420384 AATTTAATAT
*
8420394 TTTTTTAAAATTGTGATTT-GTTAA
1 TTTTTTAAAATTGTGATTTAGTAAA
*
8420418 TTTTTTAAAATT-TTATTTAGTAAA
1 TTTTTTAAAATTGTGATTTAGTAAA
8420442 TTT
1 TTT
8420445 GTTCTCATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
23 5 0.21
24 19 0.79
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.61
Consensus pattern (25 bp):
TTTTTTAAAATTGTGATTTAGTAAA
Found at i:8421065 original size:22 final size:22
Alignment explanation
Indices: 8421040--8421131 Score: 78
Period size: 22 Copynumber: 4.2 Consensus size: 22
8421030 ATAATAATTG
8421040 ATAACTTAGTAGTAAATGAGTA
1 ATAACTTAGTAGTAAATGAGTA
* * *
8421062 ATAACTTAATAGTAAATGAATG
1 ATAACTTAGTAGTAAATGAGTA
* * *
8421084 ATAATTTAGTAGTTAAT-AGTTG
1 ATAACTTAGTAGTAAATGAG-TA
** * *
8421106 ATAACTTTTTAGTGAATAAGTA
1 ATAACTTAGTAGTAAATGAGTA
8421128 ATAA
1 ATAA
8421132 TACAATAACA
Statistics
Matches: 56, Mismatches: 12, Indels: 4
0.78 0.17 0.06
Matches are distributed among these distances:
21 1 0.02
22 53 0.95
23 2 0.04
ACGTcount: A:0.45, C:0.03, G:0.15, T:0.37
Consensus pattern (22 bp):
ATAACTTAGTAGTAAATGAGTA
Found at i:8421166 original size:22 final size:22
Alignment explanation
Indices: 8421126--8421196 Score: 65
Period size: 22 Copynumber: 3.2 Consensus size: 22
8421116 AGTGAATAAG
* * *
8421126 TAATAATACAATAACAAATGCA
1 TAATAATATAATGATAAATGCA
8421148 TAATACAT-TAATGATAAAT-CAA
1 TAATA-ATATAATGATAAATGC-A
* *
8421170 TTATAATATAATTATAAATGCA
1 TAATAATATAATGATAAATGCA
8421192 TAATA
1 TAATA
8421197 GCATAGTACT
Statistics
Matches: 39, Mismatches: 6, Indels: 8
0.74 0.11 0.15
Matches are distributed among these distances:
21 3 0.08
22 33 0.85
23 3 0.08
ACGTcount: A:0.55, C:0.08, G:0.04, T:0.32
Consensus pattern (22 bp):
TAATAATATAATGATAAATGCA
Found at i:8421285 original size:11 final size:11
Alignment explanation
Indices: 8421271--8421334 Score: 53
Period size: 11 Copynumber: 5.9 Consensus size: 11
8421261 TAATTTAGTA
8421271 ATAAATTAATG
1 ATAAATTAATG
*
8421282 ATAACTTAAT-
1 ATAAATTAATG
*
8421292 AGTAAATTAGTG
1 A-TAAATTAATG
8421304 AT-AATTAAT-
1 ATAAATTAATG
*
8421313 AGTAAATTAGTG
1 A-TAAATTAATG
*
8421325 ATAATTTAAT
1 ATAAATTAAT
8421335 AGTAATTAAT
Statistics
Matches: 41, Mismatches: 7, Indels: 10
0.71 0.12 0.17
Matches are distributed among these distances:
9 1 0.02
10 8 0.20
11 30 0.73
12 2 0.05
ACGTcount: A:0.48, C:0.02, G:0.11, T:0.39
Consensus pattern (11 bp):
ATAAATTAATG
Found at i:8421297 original size:22 final size:22
Alignment explanation
Indices: 8421258--8421349 Score: 116
Period size: 22 Copynumber: 4.2 Consensus size: 22
8421248 AGTTAACAAT
* *
8421258 TGATAATTTAGTAATAAATTAA
1 TGATAATTTAATAGTAAATTAA
* *
8421280 TGATAACTTAATAGTAAATTAG
1 TGATAATTTAATAGTAAATTAA
*
8421302 TGATAA-TTAATAGTAAATTAG
1 TGATAATTTAATAGTAAATTAA
8421323 TGATAATTTAATAGT-AATTAA
1 TGATAATTTAATAGTAAATTAA
8421344 TTGATA
1 -TGATA
8421350 GTAGTTATTC
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
21 26 0.41
22 37 0.59
ACGTcount: A:0.47, C:0.01, G:0.12, T:0.40
Consensus pattern (22 bp):
TGATAATTTAATAGTAAATTAA
Found at i:8421334 original size:43 final size:43
Alignment explanation
Indices: 8421272--8421515 Score: 144
Period size: 43 Copynumber: 5.7 Consensus size: 43
8421262 AATTTAGTAA
* *
8421272 TAAATTAATGATAACTTAATAGTAAATTAGTGATAA-TTAATAG
1 TAAATTATTGATAATTTAATAGTAAATTAGT-ATAACTTAATAG
* * * *
8421315 TAAATTAGTGATAATTTAATAGT-AATTAAT-TGA--TAGTAG
1 TAAATTATTGATAATTTAATAGTAAATTAGTATAACTTAATAG
* * * * *
8421354 T-TATTCATTGAAAATTGAAAAGTAAATAAGTATAACTTAATAG
1 TAAATT-ATTGATAATTTAATAGTAAATTAGTATAACTTAATAG
* * * * * *
8421397 TAAATCATTGATAATATAATAGTTAATAACTAAAAACTTAATAG
1 TAAATTATTGATAATTTAATAGTAAATTAGT-ATAACTTAATAG
* * **
8421441 TAAATCA-TGCATAATTTAATA-TAAAATAGTAATAACTTGGTAG
1 TAAATTATTG-ATAATTTAATAGTAAATTAGT-ATAACTTAATAG
* * * * * *
8421484 TGAATTATAGATGATTTAGTAATAAATCAGTA
1 TAAATTATTGATAATTTAATAGTAAATTAGTA
8421516 ATAATTTTGT
Statistics
Matches: 153, Mismatches: 38, Indels: 20
0.73 0.18 0.09
Matches are distributed among these distances:
38 3 0.02
39 19 0.12
40 7 0.05
41 2 0.01
42 6 0.04
43 78 0.51
44 38 0.25
ACGTcount: A:0.48, C:0.04, G:0.12, T:0.36
Consensus pattern (43 bp):
TAAATTATTGATAATTTAATAGTAAATTAGTATAACTTAATAG
Found at i:8421342 original size:21 final size:22
Alignment explanation
Indices: 8421258--8421339 Score: 121
Period size: 22 Copynumber: 3.8 Consensus size: 22
8421248 AGTTAACAAT
* * *
8421258 TGATAATTTAGTAATAAATTAA
1 TGATAATTTAATAGTAAATTAG
*
8421280 TGATAACTTAATAGTAAATTAG
1 TGATAATTTAATAGTAAATTAG
8421302 TGATAA-TTAATAGTAAATTAG
1 TGATAATTTAATAGTAAATTAG
8421323 TGATAATTTAATAGTAA
1 TGATAATTTAATAGTAA
8421340 TTAATTGATA
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
21 21 0.38
22 34 0.62
ACGTcount: A:0.48, C:0.01, G:0.12, T:0.39
Consensus pattern (22 bp):
TGATAATTTAATAGTAAATTAG
Found at i:8421459 original size:22 final size:22
Alignment explanation
Indices: 8421280--8421465 Score: 70
Period size: 22 Copynumber: 8.8 Consensus size: 22
8421270 AATAAATTAA
* *
8421280 TGATAACTTAATAGTAAATTAG
1 TGATAACTTAATAGTAAATCAC
* *
8421302 TGATAA-TTAATAGTAAATTAG
1 TGATAACTTAATAGTAAATCAC
* * *
8421323 TGATAATTTAATAGT-AATTAA
1 TGATAACTTAATAGTAAATCAC
* * * * *
8421344 T--TGA--TAGTAGTTATTCAT
1 TGATAACTTAATAGTAAATCAC
* * * *
8421362 TGA-AAATTGAAAAGTAAATAAG
1 TGATAACTT-AATAGTAAATCAC
*
8421384 T-ATAACTTAATAGTAAATCAT
1 TGATAACTTAATAGTAAATCAC
* *
8421405 TGATAA-TATAATAGTTAATAAC
1 TGATAACT-TAATAGTAAATCAC
* *
8421427 TAAAAACTTAATAGTAAATCA-
1 TGATAACTTAATAGTAAATCAC
*
8421448 TGCATAATTTAATA-TAAA
1 TG-ATAACTTAATAGTAAA
8421466 ATAGTAATAA
Statistics
Matches: 125, Mismatches: 27, Indels: 25
0.71 0.15 0.14
Matches are distributed among these distances:
17 6 0.05
18 4 0.03
19 3 0.02
21 46 0.37
22 65 0.52
23 1 0.01
ACGTcount: A:0.48, C:0.04, G:0.11, T:0.37
Consensus pattern (22 bp):
TGATAACTTAATAGTAAATCAC
Found at i:8421522 original size:22 final size:22
Alignment explanation
Indices: 8421497--8421620 Score: 81
Period size: 22 Copynumber: 5.6 Consensus size: 22
8421487 ATTATAGATG
* *
8421497 ATTTAGTAATAAATCAGTAATA
1 ATTTAATAATAAATCAATAATA
** * *
8421519 ATTTTGTGATAAAT-AATTAAAA
1 ATTTAATAATAAATCAA-TAATA
* *
8421541 ATTAAATAGTAAATCAATAATA
1 ATTTAATAATAAATCAATAATA
* *
8421563 ATATAATAATAAAT-ATATAAAA
1 ATTTAATAATAAATCA-ATAATA
** * * *
8421585 AAATAATAGTAAATCATTGATA
1 ATTTAATAATAAATCAATAATA
8421607 ATTTAATAATAAAT
1 ATTTAATAATAAAT
8421621 TGATAACTTA
Statistics
Matches: 76, Mismatches: 22, Indels: 8
0.72 0.21 0.08
Matches are distributed among these distances:
21 2 0.03
22 71 0.93
23 3 0.04
ACGTcount: A:0.56, C:0.02, G:0.06, T:0.35
Consensus pattern (22 bp):
ATTTAATAATAAATCAATAATA
Found at i:8421554 original size:44 final size:44
Alignment explanation
Indices: 8421506--8421620 Score: 133
Period size: 44 Copynumber: 2.6 Consensus size: 44
8421496 GATTTAGTAA
* ** * * *
8421506 TAAATCAGTAATAATTTTGTGATAAATA-ATTAAAAATTAAATAG
1 TAAATCAATAATAATTTAATAATAAATATATAAAAAAAT-AATAG
*
8421550 TAAATCAATAATAATATAATAATAAATATATAAAAAAATAATAG
1 TAAATCAATAATAATTTAATAATAAATATATAAAAAAATAATAG
* *
8421594 TAAATCATTGATAATTTAATAATAAAT
1 TAAATCAATAATAATTTAATAATAAAT
8421621 TGATAACTTA
Statistics
Matches: 60, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
44 52 0.87
45 8 0.13
ACGTcount: A:0.57, C:0.03, G:0.05, T:0.35
Consensus pattern (44 bp):
TAAATCAATAATAATTTAATAATAAATATATAAAAAAATAATAG
Found at i:8422755 original size:15 final size:15
Alignment explanation
Indices: 8422735--8422767 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8422725 ATTTTCAAAA
8422735 TTTTGAATTTTAAGG
1 TTTTGAATTTTAAGG
*
8422750 TTTTGAATTTTAGGG
1 TTTTGAATTTTAAGG
8422765 TTT
1 TTT
8422768 AGGTTTAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.21, C:0.00, G:0.21, T:0.58
Consensus pattern (15 bp):
TTTTGAATTTTAAGG
Found at i:8422773 original size:21 final size:21
Alignment explanation
Indices: 8422747--8422788 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
8422737 TTGAATTTTA
*
8422747 AGGTTTTGAATTTTAGGGTTT
1 AGGTTTAGAATTTTAGGGTTT
*
8422768 AGGTTTAGGATTTTAGGGTTT
1 AGGTTTAGAATTTTAGGGTTT
8422789 TAATTGAGGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.19, C:0.00, G:0.31, T:0.50
Consensus pattern (21 bp):
AGGTTTAGAATTTTAGGGTTT
Found at i:8422837 original size:30 final size:29
Alignment explanation
Indices: 8422794--8422874 Score: 81
Period size: 30 Copynumber: 2.8 Consensus size: 29
8422784 GGTTTTAATT
** * *
8422794 GAGGTTTGGGGTTTTAGTTTTAGGGTTTT
1 GAGGTTTAAGGTTTTAGTTTCAGGGTTTA
* *
8422823 GAGGGTTTAAGGTTTTAATTTCGGGGTTTA
1 GA-GGTTTAAGGTTTTAGTTTCAGGGTTTA
* *
8422853 GAGGTTTTAGGGTTTAGTTTCA
1 GAGGTTTAAGGTTTTAGTTTCA
8422875 AGTTTGGAGG
Statistics
Matches: 41, Mismatches: 10, Indels: 2
0.77 0.19 0.04
Matches are distributed among these distances:
29 18 0.44
30 23 0.56
ACGTcount: A:0.16, C:0.02, G:0.35, T:0.47
Consensus pattern (29 bp):
GAGGTTTAAGGTTTTAGTTTCAGGGTTTA
Found at i:8422868 original size:29 final size:28
Alignment explanation
Indices: 8422820--8422945 Score: 83
Period size: 29 Copynumber: 4.4 Consensus size: 28
8422810 GTTTTAGGGT
* *
8422820 TTTGAGGGTTTAAGGTTTTAATTTCGGGG
1 TTTGA-GGTTTTAGGGTTTAATTTCGGGG
* **
8422849 TTTAGAGGTTTTAGGGTTTAGTTTC-AAG
1 TTT-GAGGTTTTAGGGTTTAATTTCGGGG
* * *
8422877 TTTGGAGGATTTAGGGTTTCGATTTTGGGG
1 TTT-GAGGTTTTAGGGTTT-AATTTCGGGG
** * **
8422907 TTTGAGGTTTTAAGATTTTGATTTCAAGG
1 TTTGAGGTTTT-AGGGTTTAATTTCGGGG
8422936 TTTGAGGTTT
1 TTTGAGGTTT
8422946 GGGGTTCGAA
Statistics
Matches: 75, Mismatches: 18, Indels: 8
0.74 0.18 0.08
Matches are distributed among these distances:
28 18 0.24
29 46 0.61
30 11 0.15
ACGTcount: A:0.18, C:0.03, G:0.32, T:0.47
Consensus pattern (28 bp):
TTTGAGGTTTTAGGGTTTAATTTCGGGG
Done.