Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 4 of 195
Found at i:749269 original size:2 final size:2
Alignment explanation
Indices: 749262--749287 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
749252 CCCACCACAT
749262 TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC
749288 AAATAGATTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:754092 original size:5 final size:5
Alignment explanation
Indices: 754082--754117 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
754072 ATTAACCACG
* *
754082 TAATA TAATA TAATA TGATA TGATA TAATA TAATA T
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA T
754118 GTCTAGGATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (5 bp):
TAATA
Found at i:755053 original size:86 final size:88
Alignment explanation
Indices: 754963--755171 Score: 235
Period size: 86 Copynumber: 2.4 Consensus size: 88
754953 TTTGTCTTTG
* ** *
754963 TCTCATAATATATTTTCAACAAAAACTATGTTTTTAAAATTAAAAACATA-ATTTTGTTGAAACT
1 TCTCATAATATATTTTTAACAAAAACTACATTTTTAAAATTAAAAACATAGATTTTATTGAAACT
* *
755027 ATAGAATTTTTAAAATAA-AA-TT
66 AAAAAATTTTTAAAA-AATAATTT
* * * ** * *
755049 TCTCATAATATGTTTTTAATAAAGACTACATTTTTAATCTTAAAATCATAGTCTTTTATTGAAAC
1 TCTCATAATATATTTTTAACAAAAACTACATTTTTAAAATTAAAAACATAG-ATTTTATTGAAAC
755114 TAAAAAATTTTTAAAAAATAATTT
65 TAAAAAATTTTTAAAAAATAATTT
*
755138 TCATATATAATATATTTTTAACAAAAACTACATT
1 TC-T-CATAATATATTTTTAACAAAAACTACATT
755172 AAAACTACAT
Statistics
Matches: 100, Mismatches: 17, Indels: 7
0.81 0.14 0.06
Matches are distributed among these distances:
86 41 0.41
87 2 0.02
88 27 0.27
89 4 0.04
90 1 0.01
91 25 0.25
ACGTcount: A:0.45, C:0.09, G:0.04, T:0.42
Consensus pattern (88 bp):
TCTCATAATATATTTTTAACAAAAACTACATTTTTAAAATTAAAAACATAGATTTTATTGAAACT
AAAAAATTTTTAAAAAATAATTT
Found at i:755911 original size:17 final size:17
Alignment explanation
Indices: 755889--755921 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
755879 TGTCTCTATT
755889 TTTTACAACTT-ATTTTC
1 TTTTAC-ACTTAATTTTC
755906 TTTTACACTTAATTTT
1 TTTTACACTTAATTTT
755922 TCCATATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTACACTTAATTTTC
Found at i:756133 original size:16 final size:16
Alignment explanation
Indices: 756112--756142 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
756102 TTTTTAATTA
756112 AAAAATTAAAAAAATG
1 AAAAATTAAAAAAATG
*
756128 AAAAATTAGAAAAAT
1 AAAAATTAAAAAAAT
756143 TCTAGGGAGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (16 bp):
AAAAATTAAAAAAATG
Found at i:756690 original size:15 final size:16
Alignment explanation
Indices: 756655--756696 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
756645 TTCGGGTTAT
756655 AGAGAAA-GGAAGAGA
1 AGAGAAAGGGAAGAGA
*
756670 AAAGAAAGGGAAGA-A
1 AGAGAAAGGGAAGAGA
*
756685 AGAGAAGGGGAA
1 AGAGAAAGGGAA
756697 AAGGAAACCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
15 17 0.74
16 6 0.26
ACGTcount: A:0.60, C:0.00, G:0.40, T:0.00
Consensus pattern (16 bp):
AGAGAAAGGGAAGAGA
Found at i:761495 original size:3 final size:3
Alignment explanation
Indices: 761489--761534 Score: 55
Period size: 3 Copynumber: 16.7 Consensus size: 3
761479 GATAAAAAAA
*
761489 AAT AAT AAT AAT AA- AAT AAT AA- AAT AAT AA- AAT AAC AA- AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
761533 AA
1 AA
761535 AAAATGAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
2 8 0.21
3 30 0.79
ACGTcount: A:0.74, C:0.02, G:0.00, T:0.24
Consensus pattern (3 bp):
AAT
Found at i:761508 original size:8 final size:8
Alignment explanation
Indices: 761480--761536 Score: 80
Period size: 8 Copynumber: 7.1 Consensus size: 8
761470 TGGATGAAAG
761480 ATAA-AAA
1 ATAATAAA
*
761487 AAAATAATA
1 ATAATAA-A
761496 ATAATAAA
1 ATAATAAA
761504 ATAATAAA
1 ATAATAAA
761512 ATAATAAA
1 ATAATAAA
*
761520 ATAACAAA
1 ATAATAAA
761528 ATAATAAA
1 ATAATAAA
761536 A
1 A
761537 AATGAAAAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
7 3 0.07
8 34 0.77
9 7 0.16
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (8 bp):
ATAATAAA
Found at i:761544 original size:16 final size:15
Alignment explanation
Indices: 761480--761554 Score: 80
Period size: 16 Copynumber: 4.7 Consensus size: 15
761470 TGGATGAAAG
*
761480 ATAAAAAAAAATAATA
1 ATAATAAAAAATAA-A
761496 ATAATAAAATAATAAA
1 ATAATAAAA-AATAAA
*
761512 ATAATAAAATAACAAA
1 ATAATAAAA-AATAAA
761528 ATAATAAAAAATGAAA
1 ATAATAAAAAAT-AAA
761544 A-AATGAAAAAA
1 ATAAT-AAAAAA
761555 AAAGAAAAGG
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
15 5 0.09
16 43 0.81
17 5 0.09
ACGTcount: A:0.77, C:0.01, G:0.03, T:0.19
Consensus pattern (15 bp):
ATAATAAAAAATAAA
Found at i:761552 original size:24 final size:24
Alignment explanation
Indices: 761473--761552 Score: 85
Period size: 24 Copynumber: 3.3 Consensus size: 24
761463 TCACTAATGG
*
761473 ATGAAAGATAAAAAAAAATAATAATA
1 ATGAAA-ATAATAAAAAATAA-AATA
761499 AT-AAAATAATAAAATAATAAAATA
1 ATGAAAATAATAAAA-AATAAAATA
*
761523 A-CAAAATAATAAAAAATGAAAA-A
1 ATGAAAATAATAAAAAAT-AAAATA
761546 ATGAAAA
1 ATGAAAA
761553 AAAAAGAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 10
0.80 0.03 0.17
Matches are distributed among these distances:
23 5 0.10
24 33 0.69
25 8 0.17
26 2 0.04
ACGTcount: A:0.75, C:0.01, G:0.05, T:0.19
Consensus pattern (24 bp):
ATGAAAATAATAAAAAATAAAATA
Found at i:762367 original size:63 final size:63
Alignment explanation
Indices: 762251--762401 Score: 169
Period size: 63 Copynumber: 2.4 Consensus size: 63
762241 ATCAGTGGGT
* * * * * **
762251 AAAATTTATTCTGAAATGACTAATATTGAGAAACCTATGAGTGGTGACTAAGTGATGGAAGAC
1 AAAATTTATTCTGAAATGGCTAGTGTTGAGAAACCTATGAGCGATGACTAAGTGATAAAAGAC
* * * * *
762314 GAAATTTGTTCTGAAATGGTTAGTGTTGAGAAGCCTATGAGCGATGA-TCAAGTGATAAAAGAT
1 AAAATTTATTCTGAAATGGCTAGTGTTGAGAAACCTATGAGCGATGACT-AAGTGATAAAAGAC
*
762377 AAAATTTATTCTGAGATGGCTAGTG
1 AAAATTTATTCTGAAATGGCTAGTG
762402 CTAAAATCAT
Statistics
Matches: 71, Mismatches: 16, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
62 1 0.01
63 70 0.99
ACGTcount: A:0.36, C:0.09, G:0.25, T:0.30
Consensus pattern (63 bp):
AAAATTTATTCTGAAATGGCTAGTGTTGAGAAACCTATGAGCGATGACTAAGTGATAAAAGAC
Found at i:762768 original size:22 final size:22
Alignment explanation
Indices: 762743--762788 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
762733 ATTGTGAATC
762743 TTCAAATAAGAATCTTTAAGTT
1 TTCAAATAAGAATCTTTAAGTT
** *
762765 TTCAAATGGGAATCTTTGAGTT
1 TTCAAATAAGAATCTTTAAGTT
762787 TT
1 TT
762789 AAGTTTCAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.33, C:0.09, G:0.15, T:0.43
Consensus pattern (22 bp):
TTCAAATAAGAATCTTTAAGTT
Found at i:762800 original size:28 final size:29
Alignment explanation
Indices: 762757--762812 Score: 96
Period size: 28 Copynumber: 2.0 Consensus size: 29
762747 AATAAGAATC
*
762757 TTTAAGTTTTCAAATGGGAATCTTTGAGT
1 TTTAAGTTTTCAAATGAGAATCTTTGAGT
762786 TTTAAG-TTTCAAATGAGAATCTTTGAG
1 TTTAAGTTTTCAAATGAGAATCTTTGAG
762813 GTGTGAAACT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
28 20 0.77
29 6 0.23
ACGTcount: A:0.30, C:0.07, G:0.20, T:0.43
Consensus pattern (29 bp):
TTTAAGTTTTCAAATGAGAATCTTTGAGT
Found at i:762900 original size:41 final size:41
Alignment explanation
Indices: 762816--762909 Score: 102
Period size: 41 Copynumber: 2.2 Consensus size: 41
762806 CTTTGAGGTG
*
762816 TGAAACTTTAAATTTATCAAATGTGAATCTTCAAACTCAAA
1 TGAAACTTTAAATTTATCAAATGTGAATCTTAAAACTCAAA
* * *
762857 TGAAACTTTGAACTTT-T-AAATGTGAATCTCTAAAATTCGAA
1 TGAAACTTT-AAATTTATCAAATGTGAATCT-TAAAACTCAAA
762898 TGAGAATCTTTA
1 TGA-AA-CTTTA
762910 GATGTTGGAT
Statistics
Matches: 45, Mismatches: 4, Indels: 7
0.80 0.07 0.12
Matches are distributed among these distances:
40 12 0.27
41 21 0.47
42 8 0.18
43 4 0.09
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (41 bp):
TGAAACTTTAAATTTATCAAATGTGAATCTTAAAACTCAAA
Found at i:763073 original size:31 final size:31
Alignment explanation
Indices: 763021--763081 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
763011 TCTCACATAT
763021 CTAAAATTTTACAAATCAAATTCTT-GTGAAA
1 CTAAAATTTTACAAATCAAATT-TTAGTGAAA
* *
763052 CTAAAATTTTTA-GAATTAAATTTTAGTGAA
1 CTAAAA-TTTTACAAATCAAATTTTAGTGAA
763082 TTCTTATGAA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
30 2 0.08
31 19 0.73
32 5 0.19
ACGTcount: A:0.44, C:0.08, G:0.08, T:0.39
Consensus pattern (31 bp):
CTAAAATTTTACAAATCAAATTTTAGTGAAA
Found at i:763265 original size:41 final size:41
Alignment explanation
Indices: 763211--763588 Score: 344
Period size: 41 Copynumber: 9.1 Consensus size: 41
763201 GATTGTTGAT
*
763211 GAGCCTTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAT
1 GAGCCTTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* ** * *
763252 GAGCCTTTTATTTTTCAAAGTTGTCGTGCCTCTACTTAAAT
1 GAGCCTTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* * * **
763293 GAGCCTTTTATTTTTTAAAGTTATTGCGCCTCTAATTAGAG
1 GAGCCTTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
** * *
763334 GAGCCTTTTATTTTTCAAAGTCATTGTGTCTCTGTTTAGAA
1 GAGCCTTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* *
763375 GAGCTTTTTATTTTTTCAAAGTTGTTGTACCTCTGTTTAGAG
1 GAGCCTTTTA-TTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* *
763417 GAGCCTTTTATTTTTCCAAAAGCTGTTATGCCTCTGTTTAGAG
1 GAGCCTTTTATTTTT-C-AAAGTTGTTGTGCCTCTGTTTAGAG
* ** * * ** *
763460 GAG-CTTTTATTTTTTAAAGTCATTGAGCCTTTACTTAGAA
1 GAGCCTTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* * * * ** *
763500 AAGCTTTTTACTTTTGAAAGTTGTTGAACCTCTATTTAGAG
1 GAGCCTTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
* * * *
763541 GAGCCATATTTATTTTGTTCAAAGTCGTTGAGCCTCTGCTTAGGG
1 GAGCC-T-TTTA-TTT-TTCAAAGTTGTTGTGCCTCTGTTTAGAG
763586 GAG
1 GAG
763589 TTTTGTGTCA
Statistics
Matches: 272, Mismatches: 57, Indels: 12
0.80 0.17 0.04
Matches are distributed among these distances:
40 18 0.07
41 150 0.55
42 48 0.18
43 29 0.11
44 2 0.01
45 25 0.09
ACGTcount: A:0.22, C:0.15, G:0.19, T:0.44
Consensus pattern (41 bp):
GAGCCTTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAG
Found at i:763639 original size:10 final size:10
Alignment explanation
Indices: 763624--763671 Score: 53
Period size: 10 Copynumber: 4.8 Consensus size: 10
763614 TATTTGATTT
*
763624 AAAAAAAA-C
1 AAAAAAAATA
763633 AAAAAAAATGA
1 AAAAAAAAT-A
*
763644 CAAAAAAATA
1 AAAAAAAATA
*
763654 AAAAAAAGTA
1 AAAAAAAATA
763664 AAAAAAAA
1 AAAAAAAA
763672 AAGTGAATAT
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
9 8 0.25
10 16 0.50
11 8 0.25
ACGTcount: A:0.85, C:0.04, G:0.04, T:0.06
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:763668 original size:20 final size:20
Alignment explanation
Indices: 763624--763671 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
763614 TATTTGATTT
763624 AAAAAAAACAAAAAAAATGA
1 AAAAAAAACAAAAAAAATGA
* *
763644 CAAAAAAATAAAAAAAA-GTA
1 AAAAAAAACAAAAAAAATG-A
763664 AAAAAAAA
1 AAAAAAAA
763672 AAGTGAATAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
19 1 0.04
20 23 0.96
ACGTcount: A:0.85, C:0.04, G:0.04, T:0.06
Consensus pattern (20 bp):
AAAAAAAACAAAAAAAATGA
Found at i:768142 original size:21 final size:21
Alignment explanation
Indices: 768118--768172 Score: 101
Period size: 21 Copynumber: 2.6 Consensus size: 21
768108 GAAATGCAAC
*
768118 ATGTACATATATGCTATATAT
1 ATGTATATATATGCTATATAT
768139 ATGTATATATATGCTATATAT
1 ATGTATATATATGCTATATAT
768160 ATGTATATATATG
1 ATGTATATATATG
768173 TATGTGTATG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 33 1.00
ACGTcount: A:0.38, C:0.05, G:0.11, T:0.45
Consensus pattern (21 bp):
ATGTATATATATGCTATATAT
Found at i:768147 original size:10 final size:10
Alignment explanation
Indices: 768118--768175 Score: 89
Period size: 10 Copynumber: 5.6 Consensus size: 10
768108 GAAATGCAAC
*
768118 ATGTACATAT
1 ATGTATATAT
768128 ATGCTATATAT
1 ATG-TATATAT
768139 ATGTATATAT
1 ATGTATATAT
768149 ATGCTATATAT
1 ATG-TATATAT
768160 ATGTATATAT
1 ATGTATATAT
768170 ATGTAT
1 ATGTAT
768176 GTGTATGTGT
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
10 26 0.58
11 19 0.42
ACGTcount: A:0.38, C:0.05, G:0.10, T:0.47
Consensus pattern (10 bp):
ATGTATATAT
Found at i:768355 original size:2 final size:2
Alignment explanation
Indices: 768348--768378 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
768338 TCCTTGCTTC
768348 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
768379 AAGAGAGAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:768626 original size:4 final size:4
Alignment explanation
Indices: 768617--768641 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
768607 TCGATTGCAT
768617 ATAA ATAA ATAA ATAA ATAA ATAA A
1 ATAA ATAA ATAA ATAA ATAA ATAA A
768642 ACTCAGATTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (4 bp):
ATAA
Found at i:771224 original size:78 final size:73
Alignment explanation
Indices: 771032--771236 Score: 243
Period size: 78 Copynumber: 2.8 Consensus size: 73
771022 TCACTAATAT
* * *
771032 AGTTTCATAGATAATGCAATGACAAGGGTTTCTCACTTTTGTGTTGAAATA-TTTTTCAAATAAA
1 AGTTTCACAGATAATGCAATGACATGGGTTTCTCACTTTTGTGTTGGAATATTTTTTCAAATAAA
*
771096 GTGAAAGA
66 GCGAAAGA
** * *
771104 AGTTTCACAGATAATATAATGACATGGGTTTCTCA-TCCTTGTGTTGGAATATTTTTTTAAATAA
1 AGTTTCACAGATAATGCAATGACATGGGTTTCTCACT-TTTGTGTTGGAATATTTTTTCAAATAA
771168 AGCGAAAGA
65 AGCGAAAGA
* * *
771177 ACTTTCAATTCACAGATAATGCAATGACATGAGTTTCTTACTTTTGTGTTGGAATATTTT
1 A--GT---TTCACAGATAATGCAATGACATGGGTTTCTCACTTTTGTGTTGGAATATTTT
771237 AAAAATAGAA
Statistics
Matches: 111, Mismatches: 14, Indels: 10
0.82 0.10 0.07
Matches are distributed among these distances:
71 1 0.01
72 43 0.39
73 20 0.18
75 1 0.01
78 45 0.41
79 1 0.01
ACGTcount: A:0.33, C:0.11, G:0.17, T:0.39
Consensus pattern (73 bp):
AGTTTCACAGATAATGCAATGACATGGGTTTCTCACTTTTGTGTTGGAATATTTTTTCAAATAAA
GCGAAAGA
Found at i:774903 original size:21 final size:19
Alignment explanation
Indices: 774872--774910 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 19
774862 TTATATGAAT
774872 TTAAAAAAAATAATTTTAA
1 TTAAAAAAAATAATTTTAA
*
774891 TTAATAAATAAATTATTTTA
1 TTAA-AAA-AAATAATTTTA
774911 TCATAATCTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 4 0.24
20 3 0.18
21 10 0.59
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (19 bp):
TTAAAAAAAATAATTTTAA
Found at i:779219 original size:16 final size:14
Alignment explanation
Indices: 779197--779236 Score: 53
Period size: 16 Copynumber: 2.7 Consensus size: 14
779187 TTTAAGTTGT
779197 TAGAAAAAAAATAAA
1 TAGAAAAAAAAT-AA
*
779212 TGAGAAAAGAAATAA
1 T-AGAAAAAAAATAA
779227 TAGAAAAAAA
1 TAGAAAAAAA
779237 TTTTGACTTT
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
14 8 0.36
15 4 0.18
16 10 0.45
ACGTcount: A:0.75, C:0.00, G:0.12, T:0.12
Consensus pattern (14 bp):
TAGAAAAAAAATAA
Found at i:779458 original size:42 final size:42
Alignment explanation
Indices: 779406--779492 Score: 104
Period size: 42 Copynumber: 2.1 Consensus size: 42
779396 GACTTTTTGT
*
779406 ATAATCATAA-CTTTTATAAAATAATAATATATTTATATTCAA
1 ATAATCATAACCATTTATAAAATAATAAT-TATTTATATTCAA
* * * * *
779448 ATAATTATAACCATTTATCATATAATAATTATTTTTGTTCAA
1 ATAATCATAACCATTTATAAAATAATAATTATTTATATTCAA
779490 ATA
1 ATA
779493 TAATTATTTA
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 23 0.61
43 15 0.39
ACGTcount: A:0.46, C:0.08, G:0.01, T:0.45
Consensus pattern (42 bp):
ATAATCATAACCATTTATAAAATAATAATTATTTATATTCAA
Found at i:785010 original size:14 final size:14
Alignment explanation
Indices: 784991--785024 Score: 52
Period size: 14 Copynumber: 2.4 Consensus size: 14
784981 GATGACTGTG
784991 TTTTTTGT-TTTTCT
1 TTTTTTGTGTTTT-T
785005 TTTTTTGTGTTTTT
1 TTTTTTGTGTTTTT
785019 TTTTTT
1 TTTTTT
785025 TTACTTTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
14 15 0.79
15 4 0.21
ACGTcount: A:0.00, C:0.03, G:0.09, T:0.88
Consensus pattern (14 bp):
TTTTTTGTGTTTTT
Found at i:785015 original size:16 final size:14
Alignment explanation
Indices: 784991--785026 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 14
784981 GATGACTGTG
784991 TTTTTTGTTTTTCTT
1 TTTTTTGTTTTT-TT
785006 TTTTTGTGTTTTTTT
1 TTTTT-TGTTTTTTT
785021 TTTTTT
1 TTTTTT
785027 ACTTTCTAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
14 1 0.05
15 12 0.60
16 7 0.35
ACGTcount: A:0.00, C:0.03, G:0.08, T:0.89
Consensus pattern (14 bp):
TTTTTTGTTTTTTT
Found at i:785505 original size:3 final size:3
Alignment explanation
Indices: 785443--785490 Score: 73
Period size: 3 Copynumber: 16.7 Consensus size: 3
785433 TTTGTTTATG
*
785443 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT- TTA GTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
785489 TT
1 TT
785491 TTTTTGTTTT
Statistics
Matches: 41, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
2 4 0.10
3 37 0.90
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:786854 original size:1 final size:1
Alignment explanation
Indices: 786850--786878 Score: 58
Period size: 1 Copynumber: 29.0 Consensus size: 1
786840 GGAAAAAATT
786850 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA
786879 GAGAAAGCGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:787288 original size:18 final size:18
Alignment explanation
Indices: 787249--787291 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
787239 TATTATAGTG
* **
787249 ATAAGATTAAAATCAGTT
1 ATAAAATTAAAATCAGCA
787267 ATAAAATTAAAATCAGCA
1 ATAAAATTAAAATCAGCA
787285 ATAAAAT
1 ATAAAAT
787292 GTGTGTTTAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.58, C:0.07, G:0.07, T:0.28
Consensus pattern (18 bp):
ATAAAATTAAAATCAGCA
Found at i:788042 original size:19 final size:19
Alignment explanation
Indices: 788011--788054 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
788001 TTAAATTATT
*
788011 TAAT-ATTTATAAAATTTA
1 TAATAATTTATAAAATTAA
788029 TATATAATTT-TAAAATTAA
1 TA-ATAATTTATAAAATTAA
788048 TAATAAT
1 TAATAAT
788055 AATATATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
18 7 0.30
19 12 0.52
20 4 0.17
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (19 bp):
TAATAATTTATAAAATTAA
Found at i:788657 original size:19 final size:19
Alignment explanation
Indices: 788613--788659 Score: 58
Period size: 19 Copynumber: 2.5 Consensus size: 19
788603 TTTATCATAA
* *
788613 AAATAATTTTTTAATTATT
1 AAATAATTTTATAAATATT
* *
788632 TATTAATTTTATAAATATT
1 AAATAATTTTATAAATATT
788651 AAATAATTT
1 AAATAATTT
788660 AAATTTTTTA
Statistics
Matches: 22, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (19 bp):
AAATAATTTTATAAATATT
Found at i:789003 original size:16 final size:15
Alignment explanation
Indices: 788975--789045 Score: 70
Period size: 16 Copynumber: 4.5 Consensus size: 15
788965 ATTCTATTCA
788975 AATTAATTTAAATTTG
1 AATT-ATTTAAATTTG
788991 AATTATTTAAAATTTG
1 AATTATTT-AAATTTG
*
789007 AATTAATTAAATTTG
1 AATTATTTAAATTTG
* * *
789022 GATCATTTCAATTTTG
1 AATTATTT-AAATTTG
*
789038 AATAATTT
1 AATTATTT
789046 TTGTTTAAGA
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
15 16 0.35
16 30 0.65
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (15 bp):
AATTATTTAAATTTG
Found at i:789020 original size:31 final size:31
Alignment explanation
Indices: 788975--789044 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 31
788965 ATTCTATTCA
*
788975 AATTAATTTAAATTTGAATTATTTAAAATTTG
1 AATTAA-TTAAATTTGAATCATTTAAAATTTG
* * *
789007 AATTAATTAAATTTGGATCATTTCAATTTTG
1 AATTAATTAAATTTGAATCATTTAAAATTTG
789038 AA-TAATT
1 AATTAATT
789045 TTTGTTTAAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
30 5 0.15
31 23 0.68
32 6 0.18
ACGTcount: A:0.41, C:0.03, G:0.07, T:0.49
Consensus pattern (31 bp):
AATTAATTAAATTTGAATCATTTAAAATTTG
Found at i:799211 original size:2 final size:2
Alignment explanation
Indices: 799204--799240 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
799194 AGAATTTAAA
799204 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
799241 AATATAAAAC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:812235 original size:2 final size:2
Alignment explanation
Indices: 812230--812262 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
812220 TGTGCACACA
812230 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
812263 ACAAAGAGAA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:813832 original size:69 final size:70
Alignment explanation
Indices: 813759--813951 Score: 192
Period size: 69 Copynumber: 2.6 Consensus size: 70
813749 ATAGATGATG
* * *
813759 CAATGGCATGGGTTTCTCACTTTTGTGTTGGAATATTTTTAAAAAGTGAAAGAAGTTTCACAGTG
1 CAATGACATGGGTTTCTCACTTTTGTGTTGGAATATTTTTAAAAAGCGAAAGAAGTTTCA-ACTG
813824 -AATA-
65 AAATAT
* * * *
813828 CAATGACATGGATTTCTCACCTTTGTGTTGGCATTTTTTTTTTTAAATAAAGCGAAAGAAGTTTC
1 CAATGACATGGGTTTCTCACTTTTGTGTTGG-A---ATATTTTT-AA-AAAGCGAAAGAAGTTTC
813893 AACTGACAAATAGTT
60 AACTG--AAATA--T
* *
813908 CAATGACATGAGTTTCTCACTTTTGTGTTGAAATATTTTTAAAA
1 CAATGACATGGGTTTCTCACTTTTGTGTTGGAATATTTTTAAAA
813952 TAAAATAAAA
Statistics
Matches: 99, Mismatches: 13, Indels: 19
0.76 0.10 0.15
Matches are distributed among these distances:
69 28 0.28
70 1 0.01
73 6 0.06
74 7 0.07
75 19 0.19
76 6 0.06
77 4 0.04
79 1 0.01
80 27 0.27
ACGTcount: A:0.32, C:0.12, G:0.18, T:0.39
Consensus pattern (70 bp):
CAATGACATGGGTTTCTCACTTTTGTGTTGGAATATTTTTAAAAAGCGAAAGAAGTTTCAACTGA
AATAT
Found at i:813947 original size:80 final size:72
Alignment explanation
Indices: 813759--813947 Score: 181
Period size: 80 Copynumber: 2.5 Consensus size: 72
813749 ATAGATGATG
* *
813759 CAATGGCATGGGTTTCTCACTTTTGTGTTGGAATA----TTTTTAAAAAGTGAAAGAAGTTTCAC
1 CAATGACAT-GGTTTCTCACTTTTGTGTTGGAATATTTTTTTTTAAAAAGCGAAAGAAGTTTCAC
*
813820 AGTGAATA
65 ACTGAATA
* * *
813828 CAATGACATGGATTTCTCACCTTTGTGTTGGCATTTTTTTTTTTAAATAAAGCGAAAGAAGTTTC
1 CAATGACATGG-TTTCTCACTTTTGTGTTGGAATATTTTTTTTT-AA-AAAGCGAAAGAAGTTTC
813893 A-ACTGACAAATA
63 ACACTG---AATA
*
813905 GTTCAATGACATGAGTTTCTCACTTTTGTGTTGAAATATTTTT
1 ---CAATGACATG-GTTTCTCACTTTTGTGTTGGAATATTTTT
813948 AAAATAAAAT
Statistics
Matches: 96, Mismatches: 10, Indels: 17
0.78 0.08 0.14
Matches are distributed among these distances:
68 2 0.02
69 28 0.29
73 5 0.05
74 5 0.05
75 17 0.18
77 4 0.04
80 34 0.35
81 1 0.01
ACGTcount: A:0.30, C:0.12, G:0.18, T:0.40
Consensus pattern (72 bp):
CAATGACATGGTTTCTCACTTTTGTGTTGGAATATTTTTTTTTAAAAAGCGAAAGAAGTTTCACA
CTGAATA
Found at i:815267 original size:22 final size:23
Alignment explanation
Indices: 815239--815283 Score: 74
Period size: 22 Copynumber: 2.0 Consensus size: 23
815229 GTCTAAGTCA
815239 TTATTTAATTATAAAA-ATATTT
1 TTATTTAATTATAAAATATATTT
*
815261 TTATTTAATTTTAAAATATATTT
1 TTATTTAATTATAAAATATATTT
815284 AAAAATATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 15 0.71
23 6 0.29
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (23 bp):
TTATTTAATTATAAAATATATTT
Found at i:815278 original size:21 final size:22
Alignment explanation
Indices: 815239--815284 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 22
815229 GTCTAAGTCA
*
815239 TTATTTAATTATAAAAATATTT
1 TTATTTAATTATAAAAATATAT
*
815261 TTATTTAATT-TTAAAATATAT
1 TTATTTAATTATAAAAATATAT
815282 TTA
1 TTA
815285 AAAATATTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (22 bp):
TTATTTAATTATAAAAATATAT
Found at i:818885 original size:95 final size:95
Alignment explanation
Indices: 818722--818911 Score: 299
Period size: 95 Copynumber: 2.0 Consensus size: 95
818712 ACCAAGAGAA
*
818722 TAGCTAAATGAGTAGGCTATTAAAAGGGTGTAATTGAATTTTAGATTAAATTTTGAGTAAGGAGT
1 TAGCTAAATGAGTAAGCTATTAAAAGGGTGTAATTGAATTTTAGATTAAATTTTGAGTAAGGAGT
* *
818787 TTTAGGAGATTTTTTTCATTCTAAAAATCT
66 TTTAGGAGACTTTTCTCATTCTAAAAATCT
* * * * *
818817 TAGCTAAGTGAGTAAGTTATTAAAATGGTGTAATTGAATTTTGGGTTAAATTTTGAGTAAGGAGT
1 TAGCTAAATGAGTAAGCTATTAAAAGGGTGTAATTGAATTTTAGATTAAATTTTGAGTAAGGAGT
*
818882 TTTATGAGACTTTTCTCATTCTAAAAATCT
66 TTTAGGAGACTTTTCTCATTCTAAAAATCT
818912 GACAATTGTA
Statistics
Matches: 86, Mismatches: 9, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
95 86 1.00
ACGTcount: A:0.34, C:0.06, G:0.20, T:0.41
Consensus pattern (95 bp):
TAGCTAAATGAGTAAGCTATTAAAAGGGTGTAATTGAATTTTAGATTAAATTTTGAGTAAGGAGT
TTTAGGAGACTTTTCTCATTCTAAAAATCT
Found at i:819343 original size:2 final size:2
Alignment explanation
Indices: 819336--819362 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
819326 TTGGTATACT
819336 AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG A
819363 TGAGTTATGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:821612 original size:21 final size:23
Alignment explanation
Indices: 821567--821610 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
821557 TTCTATATTT
*
821567 TATATGAAATAATATATTTTAAA
1 TATATGAAATAATATATATTAAA
*
821590 TATATGAAATACTATA-ATTAA
1 TATATGAAATAATATATATTAA
821611 TATCGGTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.52, C:0.02, G:0.05, T:0.41
Consensus pattern (23 bp):
TATATGAAATAATATATATTAAA
Found at i:826684 original size:19 final size:19
Alignment explanation
Indices: 826639--826685 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
826629 TTTATCATAA
* *
826639 AAATAATTTTTTAATTATT
1 AAATAATTTTATAAATATT
*
826658 -TATGAATTTTATAAATATT
1 AAAT-AATTTTATAAATATT
826677 AAATAATTT
1 AAATAATTT
826686 AAATATATCA
Statistics
Matches: 22, Mismatches: 4, Indels: 4
0.73 0.13 0.13
Matches are distributed among these distances:
18 2 0.09
19 18 0.82
20 2 0.09
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.53
Consensus pattern (19 bp):
AAATAATTTTATAAATATT
Found at i:826832 original size:20 final size:21
Alignment explanation
Indices: 826802--826844 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
826792 ACATGAAATT
826802 AATATAGTAAAAATATATTAA
1 AATATAGTAAAAATATATTAA
* *
826823 AATA-AGTAAAATTTTATTAA
1 AATATAGTAAAAATATATTAA
826843 AA
1 AA
826845 GTAATATAAC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 16 0.80
21 4 0.20
ACGTcount: A:0.60, C:0.00, G:0.05, T:0.35
Consensus pattern (21 bp):
AATATAGTAAAAATATATTAA
Found at i:827371 original size:12 final size:13
Alignment explanation
Indices: 827356--827388 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
827346 AAATATTTTT
827356 AATTATTTT-AAA
1 AATTATTTTGAAA
827368 AATTATTTTGAAA
1 AATTATTTTGAAA
*
827381 AAATATTT
1 AATTATTT
827389 GATGTGTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 9 0.47
13 10 0.53
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (13 bp):
AATTATTTTGAAA
Found at i:827699 original size:14 final size:14
Alignment explanation
Indices: 827627--827700 Score: 50
Period size: 14 Copynumber: 5.4 Consensus size: 14
827617 TATTAATTTA
*
827627 AATTATTAATATTAT
1 AATTATTAATAAT-T
*
827642 AATTGATTAAT-ATA
1 AATT-ATTAATAATT
*
827656 AATGA-TAATAA-T
1 AATTATTAATAATT
*
827668 -ATTATTAAT-ATG
1 AATTATTAATAATT
827680 ATATTATTAATAATT
1 A-ATTATTAATAATT
827695 AATTAT
1 AATTAT
827701 ATATAATAAA
Statistics
Matches: 45, Mismatches: 7, Indels: 15
0.67 0.10 0.22
Matches are distributed among these distances:
11 4 0.09
12 8 0.18
13 2 0.04
14 17 0.38
15 8 0.18
16 6 0.13
ACGTcount: A:0.49, C:0.00, G:0.04, T:0.47
Consensus pattern (14 bp):
AATTATTAATAATT
Found at i:827988 original size:21 final size:21
Alignment explanation
Indices: 827946--827988 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
827936 CGGCCATATT
*
827946 AACATGGTTAACAACTACGTC
1 AACATGGTTAACAACCACGTC
* *
827967 AACATGGTTAACGACCATGTC
1 AACATGGTTAACAACCACGTC
827988 A
1 A
827989 GCTATTTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.23, G:0.16, T:0.23
Consensus pattern (21 bp):
AACATGGTTAACAACCACGTC
Found at i:829000 original size:20 final size:20
Alignment explanation
Indices: 828975--829050 Score: 86
Period size: 20 Copynumber: 3.9 Consensus size: 20
828965 TGCAAGAATG
828975 TCATGCAAATATATTAATTA
1 TCATGCAAATATATTAATTA
* *
828995 TCATGC-AATAATAATAATAA
1 TCATGCAAAT-ATATTAATTA
**
829015 TCATATAAATATA-TAA-TA
1 TCATGCAAATATATTAATTA
829033 TCATGCAAATATATTAAT
1 TCATGCAAATATATTAAT
829051 AATTAAGCAA
Statistics
Matches: 45, Mismatches: 7, Indels: 8
0.75 0.12 0.13
Matches are distributed among these distances:
18 12 0.27
19 9 0.20
20 21 0.47
21 3 0.07
ACGTcount: A:0.50, C:0.09, G:0.04, T:0.37
Consensus pattern (20 bp):
TCATGCAAATATATTAATTA
Found at i:829078 original size:18 final size:18
Alignment explanation
Indices: 829057--829091 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
829047 TAATAATTAA
*
829057 GCAATTAAATATAATCAT
1 GCAATCAAATATAATCAT
829075 GCAATCAAATATAATCA
1 GCAATCAAATATAATCA
829092 CAAAAATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.51, C:0.14, G:0.06, T:0.29
Consensus pattern (18 bp):
GCAATCAAATATAATCAT
Found at i:829228 original size:15 final size:14
Alignment explanation
Indices: 829205--829238 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 14
829195 TTAATCATGC
*
829205 AATAACATATAATA
1 AATATCATATAATA
829219 TAATATCATATAATA
1 -AATATCATATAATA
829234 AATAT
1 AATAT
829239 AAAATAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (14 bp):
AATATCATATAATA
Found at i:829238 original size:24 final size:24
Alignment explanation
Indices: 829185--829246 Score: 72
Period size: 24 Copynumber: 2.6 Consensus size: 24
829175 AATATCATTC
* *
829185 AAATATAATATTA-ATCATGCAAT
1 AAATATAATATAATATCATACAAT
*
829208 AACATATAATATAATATCATATAAT
1 AA-ATATAATATAATATCATACAAT
*
829233 AAATATAAAATAAT
1 AAATATAATATAAT
829247 GCAATAATAT
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
23 2 0.06
24 21 0.64
25 10 0.30
ACGTcount: A:0.58, C:0.06, G:0.02, T:0.34
Consensus pattern (24 bp):
AAATATAATATAATATCATACAAT
Found at i:829293 original size:28 final size:27
Alignment explanation
Indices: 829259--829337 Score: 70
Period size: 28 Copynumber: 2.8 Consensus size: 27
829249 AATAATATTA
829259 ATAAATAAATAACCATGCAAATAAATAT
1 ATAAAT-AATAACCATGCAAATAAATAT
* * *
829287 ATTAATAATCATACAAT-CACATAAATAT
1 ATAAATAAT-A-ACCATGCAAATAAATAT
* *
829315 ATAAATTAATAATCATGAAAATA
1 ATAAA-TAATAACCATGCAAATA
829338 GACAAGCAAT
Statistics
Matches: 39, Mismatches: 8, Indels: 8
0.71 0.15 0.15
Matches are distributed among these distances:
27 6 0.15
28 25 0.64
29 8 0.21
ACGTcount: A:0.58, C:0.10, G:0.03, T:0.29
Consensus pattern (27 bp):
ATAAATAATAACCATGCAAATAAATAT
Found at i:829424 original size:21 final size:22
Alignment explanation
Indices: 829391--829432 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
829381 CATATAATTA
829391 AATATATAATCATGCAAATAAT
1 AATATATAATCATGCAAATAAT
*
829413 AATATA-AATCATGTAAATAA
1 AATATATAATCATGCAAATAA
829433 AAATGCACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 13 0.68
22 6 0.32
ACGTcount: A:0.57, C:0.07, G:0.05, T:0.31
Consensus pattern (22 bp):
AATATATAATCATGCAAATAAT
Found at i:829462 original size:16 final size:16
Alignment explanation
Indices: 829443--829475 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
829433 AAATGCACTT
829443 AAATATATAATA-ACAC
1 AAATA-ATAATATACAC
829459 AAATAATAATATACAC
1 AAATAATAATATACAC
829475 A
1 A
829476 TCCAATTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 6 0.38
16 10 0.62
ACGTcount: A:0.64, C:0.12, G:0.00, T:0.24
Consensus pattern (16 bp):
AAATAATAATATACAC
Found at i:829542 original size:20 final size:19
Alignment explanation
Indices: 829517--829620 Score: 92
Period size: 20 Copynumber: 5.6 Consensus size: 19
829507 TCACATAAAT
829517 AAATAAATTGATAATCATGC
1 AAATAAATT-ATAATCATGC
829537 AAATAAATTACTAATCATGC
1 AAATAAATTA-TAATCATGC
*
829557 AGATAAATTAATAATCATGC
1 AAATAAATT-ATAATCATGC
* * *
829577 GAATATA-T-TAATCATGT
1 AAATAAATTATAATCATGC
* *
829594 AAATAAA--AT-ATTAGGC
1 AAATAAATTATAATCATGC
829610 AAATAAATTAT
1 AAATAAATTAT
829621 CATACAAATA
Statistics
Matches: 69, Mismatches: 10, Indels: 12
0.76 0.11 0.13
Matches are distributed among these distances:
16 11 0.16
17 14 0.20
18 2 0.03
19 2 0.03
20 39 0.57
21 1 0.01
ACGTcount: A:0.51, C:0.09, G:0.09, T:0.32
Consensus pattern (19 bp):
AAATAAATTATAATCATGC
Found at i:829600 original size:37 final size:39
Alignment explanation
Indices: 829516--829600 Score: 102
Period size: 40 Copynumber: 2.2 Consensus size: 39
829506 ATCACATAAA
*
829516 TAAATAAATTGATAATCATGCAAATAAATTACTAATCATG
1 TAAATAAATTAATAATCATGCAAAT-AATTACTAATCATG
* * * *
829556 CAGATAAATTAATAATCATGCGAAT-A-TATTAATCATG
1 TAAATAAATTAATAATCATGCAAATAATTACTAATCATG
829593 TAAATAAA
1 TAAATAAA
829601 ATATTAGGCA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
37 16 0.42
38 1 0.03
40 21 0.55
ACGTcount: A:0.51, C:0.09, G:0.08, T:0.32
Consensus pattern (39 bp):
TAAATAAATTAATAATCATGCAAATAATTACTAATCATG
Found at i:829644 original size:20 final size:20
Alignment explanation
Indices: 829619--829658 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
829609 CAAATAAATT
829619 ATCATACAAATATAATATTA
1 ATCATACAAATATAATATTA
*
829639 ATCATATAAATATAATATTA
1 ATCATACAAATATAATATTA
829659 GTCTTGCAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.55, C:0.07, G:0.00, T:0.38
Consensus pattern (20 bp):
ATCATACAAATATAATATTA
Found at i:831516 original size:19 final size:18
Alignment explanation
Indices: 831483--831527 Score: 56
Period size: 18 Copynumber: 2.5 Consensus size: 18
831473 TTTCCCTATT
*
831483 TATATTATTATTTTTTAA
1 TATATTATTAATTTTTAA
831501 TATATTGATTAATTTTT-A
1 TATATT-ATTAATTTTTAA
*
831519 TTTATTATT
1 TATATTATT
831528 TAATAAGAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
17 3 0.12
18 12 0.50
19 9 0.38
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (18 bp):
TATATTATTAATTTTTAA
Found at i:831867 original size:11 final size:11
Alignment explanation
Indices: 831851--831880 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
831841 AATAATATTT
831851 AAAAAAATCTA
1 AAAAAAATCTA
*
831862 AAAAAATTCTA
1 AAAAAAATCTA
831873 AAAAAAAT
1 AAAAAAAT
831881 ATTTTTTTAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.73, C:0.07, G:0.00, T:0.20
Consensus pattern (11 bp):
AAAAAAATCTA
Found at i:832055 original size:31 final size:31
Alignment explanation
Indices: 832019--832091 Score: 137
Period size: 31 Copynumber: 2.4 Consensus size: 31
832009 GTGGGTTGGG
832019 TGCGTGGATCCCTGGTCAGGTAGCGGGTTGA
1 TGCGTGGATCCCTGGTCAGGTAGCGGGTTGA
832050 TGCGTGGATCCCTGGTCAGGTAGCGGGTTGA
1 TGCGTGGATCCCTGGTCAGGTAGCGGGTTGA
*
832081 TGCGCGGATCC
1 TGCGTGGATCC
832092 TTAGGCTTAA
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.12, C:0.22, G:0.41, T:0.25
Consensus pattern (31 bp):
TGCGTGGATCCCTGGTCAGGTAGCGGGTTGA
Found at i:832870 original size:12 final size:12
Alignment explanation
Indices: 832852--832912 Score: 52
Period size: 12 Copynumber: 4.8 Consensus size: 12
832842 GCCACCGGTC
*
832852 TTTTTTTTTATTA
1 TTTTTTATT-TTA
832865 TTTTTTATTTTA
1 TTTTTTATTTTA
832877 TTTTTGTATTTTTA
1 TTTTT-TA-TTTTA
832891 TATTTTT-TGTTTA
1 T-TTTTTAT-TTTA
*
832904 ATTTTTATT
1 TTTTTTATT
832913 AGTATATTTA
Statistics
Matches: 41, Mismatches: 2, Indels: 11
0.76 0.04 0.20
Matches are distributed among these distances:
12 15 0.37
13 15 0.37
14 7 0.17
15 4 0.10
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.80
Consensus pattern (12 bp):
TTTTTTATTTTA
Found at i:832912 original size:26 final size:27
Alignment explanation
Indices: 832852--832921 Score: 72
Period size: 26 Copynumber: 2.6 Consensus size: 27
832842 GCCACCGGTC
* *
832852 TTTT-TTTTTATTATTTTTTATTTTATT
1 TTTTATTTTTA-TATTTTTTAGTTTAAT
832879 TTTGTATTTTTATATTTTTT-GTTTAAT
1 TTT-TATTTTTATATTTTTTAGTTTAAT
**
832906 TTTTATTAGTATATTT
1 TTTTATTTTTATATTT
832922 AATAATATTA
Statistics
Matches: 37, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
26 11 0.30
27 11 0.30
28 9 0.24
29 6 0.16
ACGTcount: A:0.19, C:0.00, G:0.04, T:0.77
Consensus pattern (27 bp):
TTTTATTTTTATATTTTTTAGTTTAAT
Found at i:833345 original size:47 final size:48
Alignment explanation
Indices: 833181--833649 Score: 463
Period size: 47 Copynumber: 9.9 Consensus size: 48
833171 GAACAAAAAA
** * * *
833181 AAAAGCTTATCTCAGCAGAGGTTCAACAACTTTAAATAT-TTATTTGG
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATTTGG
* * * * *
833228 AAAAAGCTCCTCTCAACAGAGGTTCATCAA-TTTTAAAATCTCATCTTAGA
1 -AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCAT-TT-GG
* ** * *
833278 AAAAGCTCATCTCAATAGAGGCTCATCGACTTTAAAAATCT-ATTTGG
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATTTGG
* * * * *
833325 AAAAGCTCTTCTCAGCAGAGGCTTAACAAATTTAAAAATAT-ATTTGA
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATTTGG
** * * * * *
833372 AAAAATTCCTCTCAGCAGAGGCTCAATAA-TTTTAAAATTTCATCTCG
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATTTGG
* * * * *
833419 AAAAGCTCCTCTCAGTAAAGGCTCAACAACTTT-AAACTCTCATCTCG
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATTTGG
*
833466 AAAAGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAAAT-TCATTTGG
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATTTGG
* * * *
833513 AAAAGCTCCTCTCAGCATATGCTCAACAACTTT-AAAATCTCATCTCG
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATTTGG
* * *
833560 AAAAGCTCCTCTCAGAAGAGGCTCAACAACTTTAAAAAT-TTATTTAG
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATTTGG
* *
833607 AAAAGTTTCTCTCAGCAGAGGCTCAACAACTTTAAAAAT-TCAT
1 AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCAT
833650 CTGTTCTCAA
Statistics
Matches: 353, Mismatches: 59, Indels: 19
0.82 0.14 0.04
Matches are distributed among these distances:
46 14 0.04
47 257 0.73
48 42 0.12
49 29 0.08
50 11 0.03
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.29
Consensus pattern (48 bp):
AAAAGCTCCTCTCAGCAGAGGCTCAACAACTTTAAAAATCTCATTTGG
Found at i:833647 original size:141 final size:141
Alignment explanation
Indices: 833181--833649 Score: 561
Period size: 141 Copynumber: 3.3 Consensus size: 141
833171 GAACAAAAAA
* * * * *
833181 AAAAGCTTATCTCAGCAGAGGTTCAACAACTTTAAATATTTATTTGGAAAAAGCTCCTCTCAACA
1 AAAAGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAAATTCATTTGG-AAAAGCTCCTCTCAGCA
* * * * * *
833246 GAGGTTCATCAATTTTAAAATCTCATCTTAGAAAAAGCTCATCTCA-ATAGAGGCTCATCGACTT
65 GAGGCTCAACAATTTTAAAATCTCATC-TCG-AAAAGCTCCTCTCAGA-AGAGGCTCAACAACTT
* *
833310 TAAAAATCTATTTGG
127 TAAAAATTTATTTAG
* * * **
833325 AAAAGC-TCTTCTCAGCAGAGGCTTAACAAATTTAAAAATAT-ATTTGAAAAAATTCCTCTCAGC
1 AAAAGCTTC-TCTCAGCAGAGGCTCAACAACTTTAAAAAT-TCATTTGGAAAAGCTCCTCTCAGC
* *
833388 AGAGGCTCAATAATTTTAAAATTTCATCTCGAAAAGCTCCTCTCAGTAA-AGGCTCAACAACTTT
64 AGAGGCTCAACAATTTTAAAATCTCATCTCGAAAAGCTCCTCTCAG-AAGAGGCTCAACAACTTT
* * * *
833452 -AAACTCTCATCTCG
128 AAAAAT-TTATTTAG
* * *
833466 AAAAGCTCCTCTCAGTAGAGGCTCAACAACTTTAAAAATTCATTTGGAAAAGCTCCTCTCAGCAT
1 AAAAGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAAATTCATTTGGAAAAGCTCCTCTCAGCAG
* *
833531 ATGCTCAACAACTTTAAAATCTCATCTCGAAAAGCTCCTCTCAGAAGAGGCTCAACAACTTTAAA
66 AGGCTCAACAATTTTAAAATCTCATCTCGAAAAGCTCCTCTCAGAAGAGGCTCAACAACTTTAAA
833596 AATTTATTTAG
131 AATTTATTTAG
*
833607 AAAAGTTTCTCTCAGCAGAGGCTCAACAACTTTAAAAATTCAT
1 AAAAGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAAATTCAT
833650 CTGTTCTCAA
Statistics
Matches: 275, Mismatches: 41, Indels: 21
0.82 0.12 0.06
Matches are distributed among these distances:
140 7 0.03
141 183 0.67
142 8 0.03
143 39 0.14
144 37 0.13
145 1 0.00
ACGTcount: A:0.37, C:0.21, G:0.12, T:0.29
Consensus pattern (141 bp):
AAAAGCTTCTCTCAGCAGAGGCTCAACAACTTTAAAAATTCATTTGGAAAAGCTCCTCTCAGCAG
AGGCTCAACAATTTTAAAATCTCATCTCGAAAAGCTCCTCTCAGAAGAGGCTCAACAACTTTAAA
AATTTATTTAG
Found at i:837799 original size:38 final size:35
Alignment explanation
Indices: 837723--837803 Score: 92
Period size: 35 Copynumber: 2.2 Consensus size: 35
837713 ATGAATTTTA
*
837723 TTATTTATTATTATTATATGTATATTTTTACTTAT
1 TTATTTATTATTATTATATGTATATTTATACTTAT
* *
837758 TTATTTATTATTATTTTTTGTTAATATTTATA-TGTATT
1 TTATTTATTATTATTATATG-T-ATATTTATACT-TA-T
837796 TTATTTAT
1 TTATTTAT
837804 ATAGCTCTAT
Statistics
Matches: 39, Mismatches: 3, Indels: 5
0.83 0.06 0.11
Matches are distributed among these distances:
35 18 0.46
36 2 0.05
37 10 0.26
38 9 0.23
ACGTcount: A:0.27, C:0.01, G:0.04, T:0.68
Consensus pattern (35 bp):
TTATTTATTATTATTATATGTATATTTATACTTAT
Found at i:837855 original size:11 final size:11
Alignment explanation
Indices: 837719--837856 Score: 69
Period size: 10 Copynumber: 12.9 Consensus size: 11
837709 TTTTATGAAT
837719 TTTATTATTTA
1 TTTATTATTTA
837730 -TTATTATTATA
1 TTTATTATT-TA
837741 TGTATATT-TTTA
1 T-T-TATTATTTA
*
837753 CTTATTTATTTA
1 TTTA-TTATTTA
837765 -TTATTATTT-
1 TTTATTATTTA
* *
837774 TTTGTTA-ATA
1 TTTATTATTTA
*
837784 TTTA-TATGTA
1 TTTATTATTTA
837794 -TT-TTATTTA
1 TTTATTATTTA
* * * *
837803 TATAGCTCTATA
1 TTTA-TTATTTA
*
837815 TTTATTATATA
1 TTTATTATTTA
* *
837826 -TTATAATTAA
1 TTTATTATTTA
837836 TTTATTATTTA
1 TTTATTATTTA
837847 TTTATTATTT
1 TTTATTATTT
837857 TTTTTCTTGT
Statistics
Matches: 95, Mismatches: 18, Indels: 28
0.67 0.13 0.20
Matches are distributed among these distances:
9 10 0.11
10 34 0.36
11 31 0.33
12 13 0.14
13 3 0.03
14 4 0.04
ACGTcount: A:0.30, C:0.02, G:0.03, T:0.65
Consensus pattern (11 bp):
TTTATTATTTA
Found at i:845007 original size:1 final size:1
Alignment explanation
Indices: 845001--845055 Score: 74
Period size: 1 Copynumber: 55.0 Consensus size: 1
844991 AATGTGTGAA
** * *
845001 TTTTTTTTTTTTTTTTGATTTGTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
845056 ACTAAAAATG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
1 47 1.00
ACGTcount: A:0.02, C:0.00, G:0.05, T:0.93
Consensus pattern (1 bp):
T
Found at i:845028 original size:21 final size:21
Alignment explanation
Indices: 845002--845055 Score: 90
Period size: 21 Copynumber: 2.6 Consensus size: 21
844992 ATGTGTGAAT
845002 TTTTTTTTTTTTTTTGATTTG
1 TTTTTTTTTTTTTTTGATTTG
**
845023 TTTTTTTTTTTTTTTTTTTTG
1 TTTTTTTTTTTTTTTGATTTG
845044 TTTTTTTTTTTT
1 TTTTTTTTTTTT
845056 ACTAAAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.02, C:0.00, G:0.06, T:0.93
Consensus pattern (21 bp):
TTTTTTTTTTTTTTTGATTTG
Found at i:845037 original size:26 final size:24
Alignment explanation
Indices: 845001--845055 Score: 92
Period size: 26 Copynumber: 2.2 Consensus size: 24
844991 AATGTGTGAA
845001 TTTTTTTTTTTTTTTTGATTTGTTTT
1 TTTTTTTTTTTTTTTTG-TTT-TTTT
845027 TTTTTTTTTTTTTTTTGTTTTTTT
1 TTTTTTTTTTTTTTTTGTTTTTTT
845051 TTTTT
1 TTTTT
845056 ACTAAAAATG
Statistics
Matches: 29, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
24 9 0.31
25 3 0.10
26 17 0.59
ACGTcount: A:0.02, C:0.00, G:0.05, T:0.93
Consensus pattern (24 bp):
TTTTTTTTTTTTTTTTGTTTTTTT
Found at i:846750 original size:27 final size:27
Alignment explanation
Indices: 846718--846786 Score: 138
Period size: 27 Copynumber: 2.6 Consensus size: 27
846708 TTCGGGCTTA
846718 AAACGACGTCGTTTTGGGCCTTTAATG
1 AAACGACGTCGTTTTGGGCCTTTAATG
846745 AAACGACGTCGTTTTGGGCCTTTAATG
1 AAACGACGTCGTTTTGGGCCTTTAATG
846772 AAACGACGTCGTTTT
1 AAACGACGTCGTTTT
846787 AATTTTGGTA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.33
Consensus pattern (27 bp):
AAACGACGTCGTTTTGGGCCTTTAATG
Found at i:847449 original size:12 final size:12
Alignment explanation
Indices: 847432--847456 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
847422 GCTGGAGGGT
847432 GGCTGGTCGGGA
1 GGCTGGTCGGGA
847444 GGCTGGTCGGGA
1 GGCTGGTCGGGA
847456 G
1 G
847457 TTGGCTGGAC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.16, G:0.60, T:0.16
Consensus pattern (12 bp):
GGCTGGTCGGGA
Found at i:847640 original size:3 final size:3
Alignment explanation
Indices: 847632--847692 Score: 104
Period size: 3 Copynumber: 20.3 Consensus size: 3
847622 TACATAAACC
**
847632 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AAA
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
847680 ATT ATT ATT ATT A
1 ATT ATT ATT ATT A
847693 ATAAGAATTA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:849258 original size:15 final size:15
Alignment explanation
Indices: 849238--849284 Score: 53
Period size: 15 Copynumber: 3.3 Consensus size: 15
849228 CTATATATTT
849238 AAATTTTTTTATTAA
1 AAATTTTTTTATTAA
849253 AAATTTTTTTA--AA
1 AAATTTTTTTATTAA
** *
849266 TCATTTTTTTTTTAA
1 AAATTTTTTTATTAA
849281 AAAT
1 AAAT
849285 CATAAATTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
13 10 0.40
15 15 0.60
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (15 bp):
AAATTTTTTTATTAA
Found at i:849673 original size:10 final size:10
Alignment explanation
Indices: 849658--849696 Score: 60
Period size: 10 Copynumber: 3.9 Consensus size: 10
849648 CGAATCATAC
*
849658 ATATATATAT
1 ATATATATGT
849668 ATATATATGT
1 ATATATATGT
*
849678 ATATGTATGT
1 ATATATATGT
849688 ATATATATG
1 ATATATATG
849697 GATCATTGAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 26 1.00
ACGTcount: A:0.41, C:0.00, G:0.10, T:0.49
Consensus pattern (10 bp):
ATATATATGT
Found at i:851687 original size:1 final size:1
Alignment explanation
Indices: 851683--851708 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
851673 TAAAAACCTG
851683 TTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTT
851709 CTGATAAAAG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:852449 original size:16 final size:16
Alignment explanation
Indices: 852430--852469 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
852420 ATATTTTCAC
*
852430 TTTTCTCTTCTCATTT
1 TTTTATCTTCTCATTT
*
852446 TTTTATCTTTTCATTT
1 TTTTATCTTCTCATTT
*
852462 TTCTATCT
1 TTTTATCT
852470 AACTATCAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.10, C:0.20, G:0.00, T:0.70
Consensus pattern (16 bp):
TTTTATCTTCTCATTT
Found at i:853387 original size:23 final size:25
Alignment explanation
Indices: 853335--853391 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
853325 TTTTTTCCTT
853335 TTTTTATGTGCATATAACTTCATTAC
1 TTTTTATGTGCATATAACTT-ATTAC
*
853361 TTTTTAT-TGTATATTAACTT-TTA-
1 TTTTTATGTGCATA-TAACTTATTAC
853384 TTTTTATG
1 TTTTTATG
853392 CTTTCTCTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 6
0.80 0.03 0.17
Matches are distributed among these distances:
23 7 0.25
24 3 0.11
25 5 0.18
26 13 0.46
ACGTcount: A:0.25, C:0.09, G:0.07, T:0.60
Consensus pattern (25 bp):
TTTTTATGTGCATATAACTTATTAC
Found at i:854361 original size:2 final size:2
Alignment explanation
Indices: 854354--854383 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
854344 ATCCTTACTT
*
854354 TA TA TA TA TA TA TA TA TA TA TA TT TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
854384 CGTGTGCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (2 bp):
TA
Found at i:856774 original size:47 final size:47
Alignment explanation
Indices: 856671--856762 Score: 139
Period size: 47 Copynumber: 2.0 Consensus size: 47
856661 AAGAAGAAAG
* * * *
856671 AAAAAAAATTTCTAAATAGGCTCAAATGGTGAAGAATTTAGAAATTC
1 AAAAAAAAATTCTAAATAGACCCAAATGGTGAAAAATTTAGAAATTC
*
856718 AAAAAAAAATTCTAAATTGACCCAAATGGTGAAAAATTTAGAAAT
1 AAAAAAAAATTCTAAATAGACCCAAATGGTGAAAAATTTAGAAAT
856763 CTAAGAAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 40 1.00
ACGTcount: A:0.52, C:0.09, G:0.13, T:0.26
Consensus pattern (47 bp):
AAAAAAAAATTCTAAATAGACCCAAATGGTGAAAAATTTAGAAATTC
Found at i:867270 original size:18 final size:18
Alignment explanation
Indices: 867247--867305 Score: 73
Period size: 18 Copynumber: 3.2 Consensus size: 18
867237 TACTATGCTT
867247 AAAAAAAAGAAAAAAATA
1 AAAAAAAAGAAAAAAATA
***
867265 AAAAAATTTAAAAAAATA
1 AAAAAAAAGAAAAAAATA
*
867283 AAAAAAAGAGAGAAAAATA
1 AAAAAAA-AGAAAAAAATA
867302 AAAA
1 AAAA
867306 GGAAGACTTA
Statistics
Matches: 33, Mismatches: 7, Indels: 1
0.80 0.17 0.02
Matches are distributed among these distances:
18 21 0.64
19 12 0.36
ACGTcount: A:0.83, C:0.00, G:0.07, T:0.10
Consensus pattern (18 bp):
AAAAAAAAGAAAAAAATA
Found at i:867271 original size:8 final size:8
Alignment explanation
Indices: 867248--867288 Score: 55
Period size: 8 Copynumber: 4.9 Consensus size: 8
867238 ACTATGCTTA
*
867248 AAAAAAAG
1 AAAAAAAT
867256 AAAAAAAT
1 AAAAAAAT
867264 AAAAAAATTT
1 AAAAAAA--T
867274 AAAAAAAT
1 AAAAAAAT
867282 AAAAAAA
1 AAAAAAA
867289 AGAGAGAAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 22 0.73
10 8 0.27
ACGTcount: A:0.85, C:0.00, G:0.02, T:0.12
Consensus pattern (8 bp):
AAAAAAAT
Found at i:868399 original size:43 final size:43
Alignment explanation
Indices: 868299--868684 Score: 480
Period size: 43 Copynumber: 9.1 Consensus size: 43
868289 GATTGTAGAT
*
868299 GAGCCTTTTATTTTTTCAAAAGTTATTGTGCCTCTGTTTAAAG
1 GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAG
* *
868342 AAGCCTTTTATTTTTT-AAAAGTTGTTGTGCCTCTGTTTATAG
1 GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAG
* *
868384 GAGCCTTTTATTTTTTCAAAAATTGTTGTGCCTCTATTTAAAG
1 GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAG
*
868427 GAGCCTTTTATTTTTTC-AAAGTTGTTGTGCCTCTGTTTGAAG
1 GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAG
* * * * *
868469 GAGCCTTTTATTTTTTCAAAAGTTATCGTGTCTTTGTTTAGAG
1 GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAG
* * *
868512 GAACTTTTTATTTTTTAAAAAGTTGTTGTGCCTCTGTTTAAAG
1 GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAG
* * *
868555 GAGCCATTTATTTTTCCAAAAGTTGTTGTGCCTTTGTTTAAAG
1 GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAG
* * * *
868598 GAG-CATTTA-TTTTTC-AAAGTTGTTGAGCCTCTATTTAGAG
1 GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAG
* * * *
868638 GAGCATTATT-TATTTTTC-AAAGTTGTTGAGTCTCTGTTTAAAA
1 GAGCCTT-TTAT-TTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAG
868681 GAGC
1 GAGC
868685 TTTGTTCAAA
Statistics
Matches: 296, Mismatches: 41, Indels: 12
0.85 0.12 0.03
Matches are distributed among these distances:
40 24 0.08
41 6 0.02
42 86 0.29
43 180 0.61
ACGTcount: A:0.23, C:0.12, G:0.18, T:0.46
Consensus pattern (43 bp):
GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAG
Found at i:868442 original size:85 final size:84
Alignment explanation
Indices: 868299--868684 Score: 474
Period size: 85 Copynumber: 4.6 Consensus size: 84
868289 GATTGTAGAT
* *
868299 GAGCCTTTTATTTTTTCAAAAGTTATTGTGCCTCTGTTTAAAGAAGCCTTTTATTTTTTAAAAGT
1 GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAGGAGCCTTTTATTTTTTAAAAGT
868364 TGTTGTGCCTCTGTTTATAG
66 TGTTGTGCCTCTGTTTA-AG
* * *
868384 GAGCCTTTTATTTTTTCAAAAATTGTTGTGCCTCTATTTAAAGGAGCCTTTTATTTTTTCAAAGT
1 GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAGGAGCCTTTTATTTTTTAAAAGT
868449 TGTTGTGCCTCTGTTTGAAG
66 TGTTGTGCCTCTGTTT-AAG
* * * * * * *
868469 GAGCCTTTTATTTTTTCAAAAGTTATCGTGTCTTTGTTTAGAGGAACTTTTTATTTTTTAAAAAG
1 GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAGGAGCCTTTTATTTTTT-AAAAG
868534 TTGTTGTGCCTCTGTTTAAAG
65 TTGTTGTGCCTCTGTTT-AAG
* * * * *
868555 GAGCCATTTATTTTTCCAAAAGTTGTTGTGCCTTTGTTTAAAGGAG-CATTTA-TTTTTCAAAGT
1 GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAGGAGCCTTTTATTTTTTAAAAGT
* *
868618 TGTTGAGCCTCTATTTAGAG
66 TGTTGTGCCTCTGTTTA-AG
* * * *
868638 GAGCATTATT-TATTTTTC-AAAGTTGTTGAGTCTCTGTTTAAAAGAGC
1 GAGCCTT-TTAT-TTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAGGAGC
868685 TTTGTTCAAA
Statistics
Matches: 260, Mismatches: 35, Indels: 13
0.84 0.11 0.04
Matches are distributed among these distances:
82 1 0.00
83 51 0.20
84 12 0.05
85 132 0.51
86 64 0.25
ACGTcount: A:0.23, C:0.12, G:0.18, T:0.46
Consensus pattern (84 bp):
GAGCCTTTTATTTTTTCAAAAGTTGTTGTGCCTCTGTTTAAAGGAGCCTTTTATTTTTTAAAAGT
TGTTGTGCCTCTGTTTAAG
Found at i:869243 original size:33 final size:32
Alignment explanation
Indices: 869169--869243 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
869159 AAATTTTTGG
*
869169 GCAATTTTTTTTGGAAATTTTTTAGATTTCGA
1 GCAATTTTTTTTGGAAATTTTTTAGATTTCCA
* **
869201 TCAAATTTTTAGTGG-AATTTTTTA-ATTTCCA
1 GC-AATTTTTTTTGGAAATTTTTTAGATTTCCA
869232 GCAATTTTTTTT
1 GCAATTTTTTTT
869244 TCAGTTTTCG
Statistics
Matches: 35, Mismatches: 7, Indels: 4
0.76 0.15 0.09
Matches are distributed among these distances:
30 8 0.23
31 7 0.20
32 10 0.29
33 10 0.29
ACGTcount: A:0.25, C:0.08, G:0.12, T:0.55
Consensus pattern (32 bp):
GCAATTTTTTTTGGAAATTTTTTAGATTTCCA
Found at i:869546 original size:15 final size:15
Alignment explanation
Indices: 869519--869555 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
869509 TATTGAGCTG
*
869519 CCAAGCCGTATCCCC
1 CCAAGCCGCATCCCC
*
869534 CCGAGCCGCATCCCC
1 CCAAGCCGCATCCCC
869549 CCAAGCC
1 CCAAGCC
869556 ACATTCTGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.19, C:0.57, G:0.16, T:0.08
Consensus pattern (15 bp):
CCAAGCCGCATCCCC
Found at i:870165 original size:48 final size:50
Alignment explanation
Indices: 870089--870182 Score: 131
Period size: 49 Copynumber: 1.9 Consensus size: 50
870079 AACAAAAAAG
*
870089 AAAAAAAAATTCTAAATAGGCCCAAATT-GTGA-ACAATTTAGAAATTCAA
1 AAAAAAAAATTCTAAATAGACCCAAATTGGTGACA-AATTTAGAAATTCAA
* *
870138 AAAAAAAAATTCTAAATTGACCC-AATTGGTGGCAAATTTAGAAAT
1 AAAAAAAAATTCTAAATAGACCCAAATTGGTGACAAATTTAGAAAT
870183 CTAACAAAAA
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
48 4 0.10
49 35 0.88
50 1 0.03
ACGTcount: A:0.51, C:0.12, G:0.12, T:0.26
Consensus pattern (50 bp):
AAAAAAAAATTCTAAATAGACCCAAATTGGTGACAAATTTAGAAATTCAA
Found at i:878327 original size:5 final size:5
Alignment explanation
Indices: 878317--878352 Score: 54
Period size: 5 Copynumber: 7.2 Consensus size: 5
878307 ATTAATCATG
* *
878317 TAATA TAATA TAATA TAATA TGATA TGATA TAATA T
1 TAATA TAATA TAATA TAATA TAATA TAATA TAATA T
878353 GTCCAGGATC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
5 29 1.00
ACGTcount: A:0.53, C:0.00, G:0.06, T:0.42
Consensus pattern (5 bp):
TAATA
Found at i:880118 original size:17 final size:17
Alignment explanation
Indices: 880096--880128 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
880086 TGTCTCTATT
880096 TTTTACAACTT-ATTTTC
1 TTTTAC-ACTTAATTTTC
880113 TTTTACACTTAATTTT
1 TTTTACACTTAATTTT
880129 TCCATATTTC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.24, C:0.15, G:0.00, T:0.61
Consensus pattern (17 bp):
TTTTACACTTAATTTTC
Found at i:881675 original size:55 final size:53
Alignment explanation
Indices: 881589--881739 Score: 180
Period size: 53 Copynumber: 2.8 Consensus size: 53
881579 CTTTCTGAAA
* *
881589 AAAAAAAG-AAA-ATTTCTAAATAGGCCCAAATGGTGGAAAATTTAAAAATTTC
1 AAAAAAAGAAAATATTTCTAAATTGGCCCAAATGGTGAAAAATTTAAAAA-TTC
* * * *
881641 TAAAAAAAGAAAATATTTCTAAATTGACCTAAATGGTAAAAAATTTAGAAATTC
1 -AAAAAAAGAAAATATTTCTAAATTGGCCCAAATGGTGAAAAATTTAAAAATTC
* * *
881695 AAAAAGAGAAAATATTTGTAATTTGGCCCAAATGGTGAAATAATT
1 AAAAAAAGAAAATATTTCTAAATTGGCCCAAATGGTGAAA-AATT
881740 ATATATATTT
Statistics
Matches: 83, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
53 42 0.51
54 10 0.12
55 31 0.37
ACGTcount: A:0.51, C:0.08, G:0.13, T:0.28
Consensus pattern (53 bp):
AAAAAAAGAAAATATTTCTAAATTGGCCCAAATGGTGAAAAATTTAAAAATTC
Found at i:885736 original size:4 final size:4
Alignment explanation
Indices: 885727--885765 Score: 60
Period size: 4 Copynumber: 9.8 Consensus size: 4
885717 TGAAAGATAA
* *
885727 AAAT AAAT AAAT AAAT AAAT AAAT AAAG AAAA AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
885766 AAAAATATAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
4 32 1.00
ACGTcount: A:0.79, C:0.00, G:0.03, T:0.18
Consensus pattern (4 bp):
AAAT
Found at i:885766 original size:8 final size:8
Alignment explanation
Indices: 885725--885769 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
885715 GATGAAAGAT
885725 AAAAATAA
1 AAAAATAA
*
885733 ATAAATAA
1 AAAAATAA
*
885741 ATAAATAA
1 AAAAATAA
* *
885749 ATAAAGAA
1 AAAAATAA
885757 AAAAATAA
1 AAAAATAA
885765 AAAAA
1 AAAAA
885770 ATATAAGAAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.82, C:0.00, G:0.02, T:0.16
Consensus pattern (8 bp):
AAAAATAA
Found at i:885770 original size:12 final size:12
Alignment explanation
Indices: 885723--885770 Score: 51
Period size: 12 Copynumber: 3.8 Consensus size: 12
885713 TGGATGAAAG
885723 ATAAAAATAAATAA
1 ATAAAAA-AAA-AA
* *
885737 ATAAATAAATAA
1 ATAAAAAAAAAA
*
885749 ATAAAGAAAAAA
1 ATAAAAAAAAAA
885761 ATAAAAAAAA
1 ATAAAAAAAA
885771 TATAAGAATG
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
12 21 0.72
13 2 0.07
14 6 0.21
ACGTcount: A:0.81, C:0.00, G:0.02, T:0.17
Consensus pattern (12 bp):
ATAAAAAAAAAA
Found at i:886648 original size:63 final size:62
Alignment explanation
Indices: 886493--886648 Score: 152
Period size: 63 Copynumber: 2.5 Consensus size: 62
886483 TGGATAAGTG
* * * * * *
886493 GGTAAAATTTATTCTGAAATGACTAATGTTGAGAAACCTATAAGTGGTGACCAAGTGATGAA
1 GGTAAAATTTATTCTGAAATGGCTAGTGCTGAGAAACCTATAAGCGATGACCAAGTGATAAA
* * * * * * *
886555 GG-ACGAAATTTATTTTGAAATGGTTTGTGCTGAGAAGCTTATGAGCGATGATCAAGTGATAAAA
1 GGTA--AAATTTATTCTGAAATGGCTAGTGCTGAGAAACCTATAAGCGATGACCAAGTGAT-AAA
*
886619 GGTAAAATTTATTCTGAGATGGCTAGTGCT
1 GGTAAAATTTATTCTGAAATGGCTAGTGCT
886649 AAAATCATAT
Statistics
Matches: 73, Mismatches: 17, Indels: 7
0.75 0.18 0.07
Matches are distributed among these distances:
61 1 0.01
62 2 0.03
63 65 0.89
64 4 0.05
65 1 0.01
ACGTcount: A:0.35, C:0.09, G:0.25, T:0.31
Consensus pattern (62 bp):
GGTAAAATTTATTCTGAAATGGCTAGTGCTGAGAAACCTATAAGCGATGACCAAGTGATAAA
Found at i:887012 original size:22 final size:22
Alignment explanation
Indices: 886986--887033 Score: 87
Period size: 22 Copynumber: 2.2 Consensus size: 22
886976 GGATTGTGAA
886986 TTTTCAAATAAGAATCTTTGAG
1 TTTTCAAATAAGAATCTTTGAG
*
887008 TTTTCAAATGAGAATCTTTGAG
1 TTTTCAAATAAGAATCTTTGAG
887030 TTTT
1 TTTT
887034 GAGTTTCAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.31, C:0.08, G:0.15, T:0.46
Consensus pattern (22 bp):
TTTTCAAATAAGAATCTTTGAG
Found at i:887045 original size:28 final size:29
Alignment explanation
Indices: 887002--887057 Score: 105
Period size: 28 Copynumber: 2.0 Consensus size: 29
886992 AATAAGAATC
887002 TTTGAGTTTTCAAATGAGAATCTTTGAGT
1 TTTGAGTTTTCAAATGAGAATCTTTGAGT
887031 TTTGAG-TTTCAAATGAGAATCTTTGAG
1 TTTGAGTTTTCAAATGAGAATCTTTGAG
887058 GTGTGAAACC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
28 21 0.78
29 6 0.22
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (29 bp):
TTTGAGTTTTCAAATGAGAATCTTTGAGT
Found at i:887517 original size:41 final size:41
Alignment explanation
Indices: 887460--887822 Score: 295
Period size: 41 Copynumber: 8.7 Consensus size: 41
887450 TGTTGATGAG
*
887460 CTTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAGC
1 CTTTTATTTTTCAAAGTTGTTGTGCCTCTATTTAGAGGAGC
* * *
887501 CTTTTATTTTTCAAAGTTGTTGTGCCTCTACTTAAAGGAGT
1 CTTTTATTTTTCAAAGTTGTTGTGCCTCTATTTAGAGGAGC
* * *
887542 CTTTTATTTTTTAAAGTTATTGTGCCTCTGA-TTAGATGAGC
1 CTTTTATTTTTCAAAGTTGTTGTGCCTCT-ATTTAGAGGAGC
* * ** * *
887583 TTTTTAGTTTTCAAAGTCATTGTGCCTCTATTTATAAGAGC
1 CTTTTATTTTTCAAAGTTGTTGTGCCTCTATTTAGAGGAGC
* * * * *
887624 CTTTTATTTTTTTAAAGTTATTGTACCTCTGTTTAAAGGAGC
1 CTTTTA-TTTTTCAAAGTTGTTGTGCCTCTATTTAGAGGAGC
* * * *
887666 CTTTTATTTTTTCAAAAGCTGTTATGCCTCTGTTTAGAAGAG-
1 CTTTTA-TTTTTC-AAAGTTGTTGTGCCTCTATTTAGAGGAGC
** * * * **
887708 CTTTTATTTGTT-AAAGTCATTGAGTCTCTACTTAGAAAAG-
1 CTTTTATTT-TTCAAAGTTGTTGTGCCTCTATTTAGAGGAGC
***
887748 CTTTTCA-TTTTCAAAGTTGTTGAATCTCTATTTAGAGGAGC
1 CTTTT-ATTTTTCAAAGTTGTTGTGCCTCTATTTAGAGGAGC
* *
887789 CATATTTATTTTGTTCAAAGTCGTTGAGCCTCTA
1 C-T-TTTA-TTT-TTCAAAGTTGTTGTGCCTCTA
887823 CTTGGGGAAA
Statistics
Matches: 261, Mismatches: 48, Indels: 22
0.79 0.15 0.07
Matches are distributed among these distances:
39 2 0.01
40 49 0.19
41 114 0.44
42 51 0.20
43 25 0.10
44 2 0.01
45 18 0.07
ACGTcount: A:0.23, C:0.14, G:0.17, T:0.46
Consensus pattern (41 bp):
CTTTTATTTTTCAAAGTTGTTGTGCCTCTATTTAGAGGAGC
Found at i:887597 original size:82 final size:81
Alignment explanation
Indices: 887457--887788 Score: 330
Period size: 82 Copynumber: 4.0 Consensus size: 81
887447 GATTGTTGAT
* * *
887457 GAGCTTTTATTTTTCAAAGTTGTTGTGCCTCTGTTTAGAGGAGCCTTTTATTTTTCAAAGTTGTT
1 GAGCTTTTATTTTTTAAAGTTATTGTGCCTCTGATTAGAGGAGCCTTTTATTTTTCAAAGTTGTT
*
887522 GTGCCTCTACTTA-AA
66 GTGCCTCTATTTAGAA
* * * **
887537 GGAGTCTTTTATTTTTTAAAGTTATTGTGCCTCTGATTAGATGAGCTTTTTAGTTTTCAAAGTCA
1 -GAG-CTTTTATTTTTTAAAGTTATTGTGCCTCTGATTAGAGGAGCCTTTTATTTTTCAAAGTTG
*
887602 TTGTGCCTCTATTTATAA
64 TTGTGCCTCTATTTAGAA
* * * *
887620 GAGCCTTTTATTTTTTTAAAGTTATTGTACCTCTGTTTAAAGGAGCCTTTTATTTTTTCAAAAGC
1 GAG-CTTTTA-TTTTTTAAAGTTATTGTGCCTCTGATTAGAGGAGCCTTTTA-TTTTTC-AAAGT
* *
887685 TGTTATGCCTCTGTTTAGAA
62 TGTTGTGCCTCTATTTAGAA
* * * * **
887705 GAGCTTTTATTTGTTAAAGTCATTGAGTCTCT-ACTTAGAAAAG-CTTTTCA-TTTTCAAAGTTG
1 GAGCTTTTATTTTTTAAAGTTATTGTGCCTCTGA-TTAGAGGAGCCTTTT-ATTTTTCAAAGTTG
*** *
887767 TTGAATCTCTATTTAGAG
64 TTGTGCCTCTATTTAGAA
887785 GAGC
1 GAGC
887789 CATATTTATT
Statistics
Matches: 206, Mismatches: 38, Indels: 15
0.80 0.15 0.06
Matches are distributed among these distances:
80 22 0.11
81 8 0.04
82 80 0.39
83 63 0.31
84 11 0.05
85 22 0.11
ACGTcount: A:0.23, C:0.14, G:0.17, T:0.46
Consensus pattern (81 bp):
GAGCTTTTATTTTTTAAAGTTATTGTGCCTCTGATTAGAGGAGCCTTTTATTTTTCAAAGTTGTT
GTGCCTCTATTTAGAA
Found at i:887750 original size:40 final size:40
Alignment explanation
Indices: 887699--887825 Score: 121
Period size: 40 Copynumber: 3.0 Consensus size: 40
887689 ATGCCTCTGT
*
887699 TTAGAAGAGCTTTTATTTGTTAAAGTCATTGAGTCTCTAC
1 TTAGAAGAGCTTTTATTTGTTAAAGTCGTTGAGTCTCTAC
* * * * *
887739 TTAGAAAAGCTTTTCATTT-TCAAAGTTGTTGAATCTCTAT
1 TTAGAAGAGCTTTT-ATTTGTTAAAGTCGTTGAGTCTCTAC
* *
887779 TTAGAGGAGCCATATTTATTTTGTTCAAAGTCGTTGAGCCTCTAC
1 TTAGAAGAG-C-T-TTTA-TTTGTT-AAAGTCGTTGAGTCTCTAC
887824 TT
1 TT
887826 GGGGAAATTT
Statistics
Matches: 67, Mismatches: 13, Indels: 9
0.75 0.15 0.10
Matches are distributed among these distances:
40 36 0.54
41 5 0.07
42 2 0.03
43 6 0.09
44 1 0.01
45 17 0.25
ACGTcount: A:0.27, C:0.14, G:0.17, T:0.43
Consensus pattern (40 bp):
TTAGAAGAGCTTTTATTTGTTAAAGTCGTTGAGTCTCTAC
Found at i:888860 original size:12 final size:13
Alignment explanation
Indices: 888843--888875 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
888833 CCCTATTTGG
888843 TATTTTTTTATT-
1 TATTTTTTTATTA
888855 TATTTTATTTATTA
1 TATTTT-TTTATTA
888869 TATTTTT
1 TATTTTT
888876 ACATGAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 6 0.32
13 7 0.37
14 6 0.32
ACGTcount: A:0.21, C:0.00, G:0.00, T:0.79
Consensus pattern (13 bp):
TATTTTTTTATTA
Found at i:888983 original size:26 final size:26
Alignment explanation
Indices: 888942--888996 Score: 69
Period size: 26 Copynumber: 2.1 Consensus size: 26
888932 ACTGATGGAA
888942 TTTATAAAAATTTTAAATG-GTAAATT
1 TTTATAAAAATTTTAAATGAG-AAATT
*
888968 TTTAT-AAAATTCTTAAGTGAGAAATT
1 TTTATAAAAATT-TTAAATGAGAAATT
888994 TTT
1 TTT
888997 GTTTAAATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
25 6 0.23
26 19 0.73
27 1 0.04
ACGTcount: A:0.42, C:0.02, G:0.09, T:0.47
Consensus pattern (26 bp):
TTTATAAAAATTTTAAATGAGAAATT
Found at i:889402 original size:55 final size:55
Alignment explanation
Indices: 889278--889403 Score: 137
Period size: 55 Copynumber: 2.3 Consensus size: 55
889268 TTTCCAAAAA
* * * *
889278 CAAAAAAAAAAAGAGA-ATTTCTAAATTGGCCCAAATGGTGAAAAATTTAGAAATT
1 CAAAAAAAAAAA-AAATATTTCTAAAATGACCCAAAAGGTGAAAAATTTAGAAATT
** * * *
889333 CCTAAAAAAGAAAAATATTTCTAAAATGACCTAAAAGGTGAAAATTTTAGAAATT
1 CAAAAAAAAAAAAAATATTTCTAAAATGACCCAAAAGGTGAAAAATTTAGAAATT
*
889388 AAAAAAAATAAAAAAA
1 CAAAAAAA-AAAAAAA
889404 GAAAGAATTT
Statistics
Matches: 56, Mismatches: 13, Indels: 3
0.78 0.18 0.04
Matches are distributed among these distances:
54 2 0.04
55 48 0.86
56 6 0.11
ACGTcount: A:0.58, C:0.08, G:0.11, T:0.23
Consensus pattern (55 bp):
CAAAAAAAAAAAAAATATTTCTAAAATGACCCAAAAGGTGAAAAATTTAGAAATT
Found at i:889427 original size:61 final size:62
Alignment explanation
Indices: 889336--889454 Score: 163
Period size: 61 Copynumber: 1.9 Consensus size: 62
889326 AGAAATTCCT
*
889336 AAAAAAGAAAAATATTTCTAAAATGACCTAAAAGGTGAAAATTTTAGAAATTAAAAAAAATA
1 AAAAAAGAAAAATATTTCTAAAATGACCTAAAAGGTGAAAATTTTAAAAATTAAAAAAAATA
* * *
889398 AAAAAAGAAAGAAT-TTT-T-AAATAGGCCTAAATGGTGAAAATTTTAAAAATTCAAAAA
1 AAAAAAGAAA-AATATTTCTAAAAT-GACCTAAAAGGTGAAAATTTTAAAAATTAAAAAA
889455 GAAAAAATAT
Statistics
Matches: 51, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
60 4 0.08
61 31 0.61
62 13 0.25
63 3 0.06
ACGTcount: A:0.59, C:0.05, G:0.11, T:0.25
Consensus pattern (62 bp):
AAAAAAGAAAAATATTTCTAAAATGACCTAAAAGGTGAAAATTTTAAAAATTAAAAAAAATA
Found at i:890814 original size:28 final size:28
Alignment explanation
Indices: 890774--890831 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
890764 CATTTTAACT
890774 AAATAATTTTAAAAAAGAATCAAAATGA
1 AAATAATTTTAAAAAAGAATCAAAATGA
890802 AAATAATTTTAAAAAAGAATCAAAATGA
1 AAATAATTTTAAAAAAGAATCAAAATGA
890830 AA
1 AA
890832 TGTTGAAAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.66, C:0.03, G:0.07, T:0.24
Consensus pattern (28 bp):
AAATAATTTTAAAAAAGAATCAAAATGA
Found at i:892593 original size:2 final size:2
Alignment explanation
Indices: 892588--892613 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
892578 GCACATACAT
892588 TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA
892614 AAAGGAGGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:895448 original size:72 final size:73
Alignment explanation
Indices: 895331--895482 Score: 216
Period size: 72 Copynumber: 2.1 Consensus size: 73
895321 TCACTAATAT
* * **
895331 AGTTTCATAGATAATGCAATGACAAGGGTTTCTCACTTTTGTGTTGAAATA-TTTTTCAAATAAA
1 AGTTTCACAGATAATACAATGACAAGGGTTTCTCACCCTTGTGTTGAAATATTTTTTCAAATAAA
*
895395 GTGAAAGA
66 GCGAAAGA
* * * *
895403 AGTTTCACAGATAATATAATGACATGGGTTTCTCACCCTTGTGTTGGAATATTTTTTTAAATAAA
1 AGTTTCACAGATAATACAATGACAAGGGTTTCTCACCCTTGTGTTGAAATATTTTTTCAAATAAA
895468 GCGAAAGA
66 GCGAAAGA
895476 AGTTTCA
1 AGTTTCA
895483 ATTCACAGAT
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
72 44 0.63
73 26 0.37
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (73 bp):
AGTTTCACAGATAATACAATGACAAGGGTTTCTCACCCTTGTGTTGAAATATTTTTTCAAATAAA
GCGAAAGA
Found at i:895523 original size:78 final size:73
Alignment explanation
Indices: 895331--895535 Score: 259
Period size: 78 Copynumber: 2.8 Consensus size: 73
895321 TCACTAATAT
* * *
895331 AGTTTCATAGATAATGCAATGACAAGGGTTTCTCACTTTTGTGTTGAAATA-TTTTTCAAATAAA
1 AGTTTCACAGATAATGCAATGACATGGGTTTCTCACTTTTGTGTTGGAATATTTTTTCAAATAAA
*
895395 GTGAAAGA
66 GCGAAAGA
** ** *
895403 AGTTTCACAGATAATATAATGACATGGGTTTCTCACCCTTGTGTTGGAATATTTTTTTAAATAAA
1 AGTTTCACAGATAATGCAATGACATGGGTTTCTCACTTTTGTGTTGGAATATTTTTTCAAATAAA
895468 GCGAAAGA
66 GCGAAAGA
* *
895476 AGTTTCAATTCACAGATAATGCAATGACATGAGTTTCTTACTTTTGTGTTGGAATATTTT
1 AG--T---TTCACAGATAATGCAATGACATGGGTTTCTCACTTTTGTGTTGGAATATTTT
895536 AAAAATAGAA
Statistics
Matches: 112, Mismatches: 15, Indels: 6
0.84 0.11 0.05
Matches are distributed among these distances:
72 44 0.39
73 21 0.19
75 1 0.01
78 46 0.41
ACGTcount: A:0.33, C:0.11, G:0.18, T:0.38
Consensus pattern (73 bp):
AGTTTCACAGATAATGCAATGACATGGGTTTCTCACTTTTGTGTTGGAATATTTTTTCAAATAAA
GCGAAAGA
Found at i:897497 original size:62 final size:62
Alignment explanation
Indices: 897400--897523 Score: 248
Period size: 62 Copynumber: 2.0 Consensus size: 62
897390 TCTTAACTAG
897400 TGTACAGATAAACCTACCCGACTTAAGACATAGATACCTATTCTCACATTAAAAGTGTTTAC
1 TGTACAGATAAACCTACCCGACTTAAGACATAGATACCTATTCTCACATTAAAAGTGTTTAC
897462 TGTACAGATAAACCTACCCGACTTAAGACATAGATACCTATTCTCACATTAAAAGTGTTTAC
1 TGTACAGATAAACCTACCCGACTTAAGACATAGATACCTATTCTCACATTAAAAGTGTTTAC
897524 CCAATACTAA
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
62 62 1.00
ACGTcount: A:0.37, C:0.23, G:0.11, T:0.29
Consensus pattern (62 bp):
TGTACAGATAAACCTACCCGACTTAAGACATAGATACCTATTCTCACATTAAAAGTGTTTAC
Found at i:899142 original size:52 final size:52
Alignment explanation
Indices: 899040--899144 Score: 142
Period size: 52 Copynumber: 2.0 Consensus size: 52
899030 TGGACAAGAA
*
899040 GACTTGCAAAAGAAGAATTTCAAGAGAAAGAGAATTCTTAATTGGTAAGTTT
1 GACTTGCAAAAGAAGAATTTCAAGAGAAAGAGAATTCTTAATTGGCAAGTTT
* * *
899092 GACTTGCAAGAGAAGAATTTTAAGAG-AAGAGAGATTTTTAA-TGGACAAGTTT
1 GACTTGCAAAAGAAGAATTTCAAGAGAAAGAGA-ATTCTTAATTGG-CAAGTTT
899144 G
1 G
899145 TATGGTTATA
Statistics
Matches: 47, Mismatches: 4, Indels: 4
0.85 0.07 0.07
Matches are distributed among these distances:
51 9 0.19
52 38 0.81
ACGTcount: A:0.41, C:0.07, G:0.24, T:0.29
Consensus pattern (52 bp):
GACTTGCAAAAGAAGAATTTCAAGAGAAAGAGAATTCTTAATTGGCAAGTTT
Found at i:903490 original size:28 final size:27
Alignment explanation
Indices: 903449--903510 Score: 81
Period size: 27 Copynumber: 2.3 Consensus size: 27
903439 TTAATTAAAC
*
903449 AAAAA-AATACAACAAAAAACAAACAAA
1 AAAAATAATAAAACAAAAAA-AAACAAA
* *
903476 AATAATAATAAAACAAAAAAATACAAA
1 AAAAATAATAAAACAAAAAAAAACAAA
903503 AAAAATAA
1 AAAAATAA
903511 GGGGGTTGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
27 17 0.57
28 13 0.43
ACGTcount: A:0.81, C:0.10, G:0.00, T:0.10
Consensus pattern (27 bp):
AAAAATAATAAAACAAAAAAAAACAAA
Found at i:903504 original size:11 final size:11
Alignment explanation
Indices: 903449--903509 Score: 58
Period size: 11 Copynumber: 5.8 Consensus size: 11
903439 TTAATTAAAC
903449 AAAAAAATACA
1 AAAAAAATACA
*
903460 ACAAAAA-ACA
1 AAAAAAATACA
903470 AACAAAAATA-A
1 AA-AAAAATACA
* *
903481 TAATAAA-AC-
1 AAAAAAATACA
903490 AAAAAAATACA
1 AAAAAAATACA
903501 AAAAAAATA
1 AAAAAAATA
903510 AGGGGGTTGG
Statistics
Matches: 39, Mismatches: 6, Indels: 10
0.71 0.11 0.18
Matches are distributed among these distances:
9 6 0.15
10 10 0.26
11 22 0.56
12 1 0.03
ACGTcount: A:0.80, C:0.10, G:0.00, T:0.10
Consensus pattern (11 bp):
AAAAAAATACA
Found at i:904655 original size:3 final size:3
Alignment explanation
Indices: 904647--904711 Score: 130
Period size: 3 Copynumber: 21.7 Consensus size: 3
904637 ATTTTAAACT
904647 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
904695 TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TT
904712 TATGCATGTT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 62 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:905274 original size:30 final size:29
Alignment explanation
Indices: 905214--905565 Score: 219
Period size: 30 Copynumber: 11.6 Consensus size: 29
905204 GTTCAAACTT
* **
905214 TAAAA-CAAAACCCTAAA-CATTAAATTC
1 TAAAATCAAAACCCTAAACCCTTAAACCC
* *
905241 TAAAATCAAAACCCTAAAACCCCTAAATCC
1 TAAAATCAAAACCCT-AAACCCTTAAACCC
* * *
905271 TAAAA-CTAAACCATAAACCCTTTAACCC
1 TAAAATCAAAACCCTAAACCCTTAAACCC
* * *
905299 TAAAATTAAAACCTTAGACCCTTTAAACCC
1 TAAAATCAAAACCCTAAACCC-TTAAACCC
* * *
905329 CAAAATCAAATTCCC-AAACCCTTGAAACCT
1 TAAAATCAAA-ACCCTAAACCCTT-AAACCC
* * *
905359 TAAAATCAAAACCCTAAACTCTTTAACCT
1 TAAAATCAAAACCCTAAACCCTTAAACCC
* *
905388 TAAAATCGAAACCCTAAACTCTTCAAACCC
1 TAAAATCAAAACCCTAAACCCTT-AAACCC
* *
905418 TTCAAACCTAAAACTAAAACCCTAAACCCTTTAAAACC
1 -T---A---AAATC-AAAACCCTAAACCC-TTAAACCC
* *
905456 TAAAATCAAAGCCTTAAACCC-TAAACCC
1 TAAAATCAAAACCCTAAACCCTTAAACCC
* *
905484 TAAAATCTAAACCCTAAACACTTTTAAACCC
1 TAAAATCAAAACCCTAAAC-C-CTTAAACCC
* * * *
905515 TAGAATCAAAATCTTCAAACCCTTCAAAACC
1 TAAAATCAAAACCCT-AAACCCTT-AAACCC
*
905546 TAAAAATCTTAAACCCTAAA
1 T-AAAATC-AAAACCCTAAA
905566 ATCCAAAACC
Statistics
Matches: 252, Mismatches: 48, Indels: 45
0.73 0.14 0.13
Matches are distributed among these distances:
27 5 0.02
28 47 0.19
29 54 0.21
30 71 0.28
31 32 0.13
32 12 0.05
33 5 0.02
34 2 0.01
37 5 0.02
38 17 0.07
39 2 0.01
ACGTcount: A:0.47, C:0.30, G:0.01, T:0.22
Consensus pattern (29 bp):
TAAAATCAAAACCCTAAACCCTTAAACCC
Found at i:905444 original size:7 final size:7
Alignment explanation
Indices: 905434--905502 Score: 50
Period size: 7 Copynumber: 9.6 Consensus size: 7
905424 CCTAAAACTA
905434 AAACCCT
1 AAACCCT
905441 AAACCCTTT
1 AAACCC--T
*
905450 AAAACCT
1 AAACCCT
**
905457 AAAATC-
1 AAACCCT
*
905463 AAAGCCTT
1 AAA-CCCT
905471 AAACCCT
1 AAACCCT
905478 AAACCCT
1 AAACCCT
**
905485 AAAATCT
1 AAACCCT
905492 AAACCCT
1 AAACCCT
905499 AAAC
1 AAAC
905503 ACTTTTAAAC
Statistics
Matches: 48, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
6 3 0.06
7 36 0.75
8 3 0.06
9 6 0.12
ACGTcount: A:0.48, C:0.32, G:0.01, T:0.19
Consensus pattern (7 bp):
AAACCCT
Found at i:905594 original size:29 final size:29
Alignment explanation
Indices: 905562--905619 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
905552 TCTTAAACCC
*
905562 TAAAATCCAAAACCTAAAACCCTAAATTT
1 TAAAATCCAAAACCTAAAACCCCAAATTT
* *
905591 TAAAATTCAAAACTTAAAACCCCAAATTT
1 TAAAATCCAAAACCTAAAACCCCAAATTT
905620 GGTACACAAT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.52, C:0.22, G:0.00, T:0.26
Consensus pattern (29 bp):
TAAAATCCAAAACCTAAAACCCCAAATTT
Found at i:916383 original size:11 final size:11
Alignment explanation
Indices: 916369--916408 Score: 80
Period size: 11 Copynumber: 3.6 Consensus size: 11
916359 ATAAAAAAGG
916369 AATAAAATACA
1 AATAAAATACA
916380 AATAAAATACA
1 AATAAAATACA
916391 AATAAAATACA
1 AATAAAATACA
916402 AATAAAA
1 AATAAAA
916409 AGAAAAAAAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (11 bp):
AATAAAATACA
Found at i:916385 original size:22 final size:22
Alignment explanation
Indices: 916359--916409 Score: 75
Period size: 22 Copynumber: 2.3 Consensus size: 22
916349 TTAAAAAAAG
**
916359 ATAAAAAAGGAATAAAATACAA
1 ATAAAAAACAAATAAAATACAA
*
916381 ATAAAATACAAATAAAATACAA
1 ATAAAAAACAAATAAAATACAA
916403 ATAAAAA
1 ATAAAAA
916410 GAAAAAAAAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.75, C:0.06, G:0.04, T:0.16
Consensus pattern (22 bp):
ATAAAAAACAAATAAAATACAA
Found at i:916393 original size:6 final size:5
Alignment explanation
Indices: 916369--916408 Score: 53
Period size: 5 Copynumber: 7.4 Consensus size: 5
916359 ATAAAAAAGG
916369 AATAA AATACA AATAA AATACA AATAA AATACA AATAA AA
1 AATAA AATA-A AATAA AATA-A AATAA AATA-A AATAA AA
916409 AGAAAAAAAA
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
5 17 0.53
6 15 0.47
ACGTcount: A:0.75, C:0.07, G:0.00, T:0.17
Consensus pattern (5 bp):
AATAA
Found at i:917707 original size:34 final size:34
Alignment explanation
Indices: 917621--917712 Score: 91
Period size: 34 Copynumber: 2.7 Consensus size: 34
917611 CTCTGACCTG
*
917621 TGGTTCAATTC-TAGTCTCTTTATTTTATGACTTA
1 TGGTTCAA-TCATGGTCTCTTTATTTTATGACTTA
* * * *
917655 TGGTTTAATCCTGATCTCTTTATTTTTTGA-TTCA
1 TGGTTCAATCATGGTCTCTTTATTTTATGACTT-A
917689 CT-GTTCAATCATGGTCTCTTTATT
1 -TGGTTCAATCATGGTCTCTTTATT
917713 CTCTGACGTG
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
33 4 0.08
34 43 0.90
35 1 0.02
ACGTcount: A:0.18, C:0.16, G:0.12, T:0.53
Consensus pattern (34 bp):
TGGTTCAATCATGGTCTCTTTATTTTATGACTTA
Done.