Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 40 of 195
Found at i:8422932 original size:58 final size:57
Alignment explanation
Indices: 8422806--8422951 Score: 143
Period size: 58 Copynumber: 2.5 Consensus size: 57
8422796 GGTTTGGGGT
* * * ** * *
8422806 TTTAGTTTTAGGGTTTTGAGGGTTTAAGGTTTTAATTTCGGGGTTTAGAGGTTTTAGGG
1 TTTAGTTTCAAGG-TTTGA-GGTTTAGGGTTTCGATTTCGGGGTTTAGAGGTTTTAAGA
*
8422865 TTTAGTTTCAA-GTTTGGAGGATTTAGGGTTTCGATTTTGGGGTTT-GAGGTTTTAAGA
1 TTTAGTTTCAAGGTTT-GAGG-TTTAGGGTTTCGATTTCGGGGTTTAGAGGTTTTAAGA
* *
8422922 TTTTGATTTCAAGGTTTGAGGTTTGGGGTT
1 TTTAG-TTTCAAGGTTTGAGGTTTAGGGTT
8422952 CGAAGTTTTA
Statistics
Matches: 73, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
57 27 0.37
58 33 0.45
59 13 0.18
ACGTcount: A:0.17, C:0.03, G:0.33, T:0.47
Consensus pattern (57 bp):
TTTAGTTTCAAGGTTTGAGGTTTAGGGTTTCGATTTCGGGGTTTAGAGGTTTTAAGA
Found at i:8422948 original size:43 final size:43
Alignment explanation
Indices: 8422900--8422982 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 43
8422890 GGGTTTCGAT
* * *
8422900 TTTGGGGTTTGAGGTTTTAAGATTTTGATTTCAAGGTTTGAGG
1 TTTGGGGTTCGAAGTTTTAAGATTTCGATTTCAAGGTTTGAGG
* * *
8422943 TTTGGGGTTCGAAGTTTTAGGGTTTCGATTTTAAGGTTTG
1 TTTGGGGTTCGAAGTTTTAAGATTTCGATTTCAAGGTTTG
8422983 GAAGGCTTAG
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 34 1.00
ACGTcount: A:0.17, C:0.04, G:0.33, T:0.47
Consensus pattern (43 bp):
TTTGGGGTTCGAAGTTTTAAGATTTCGATTTCAAGGTTTGAGG
Found at i:8422966 original size:58 final size:58
Alignment explanation
Indices: 8422846--8422967 Score: 135
Period size: 58 Copynumber: 2.1 Consensus size: 58
8422836 TTTAATTTCG
* * * *
8422846 GGGTTTAGAGGTTTTAGGGTTTAGTTTCAAGTTTGGAGGATTTAGGGTTTCGATTTTG
1 GGGTTTAGAGGTTTTAAGATTTAGTTTCAAGTTTGGAGGATTTAGGGGTTCGATTTTA
*
8422904 GGGTTT-GAGGTTTTAAGATTTTGATTTCAAGGTTT-GAGG-TTT-GGGGTTCGAAGTTTTA
1 GGGTTTAGAGGTTTTAAGATTTAG-TTTCAA-GTTTGGAGGATTTAGGGGTTCG-A-TTTTA
8422962 GGGTTT
1 GGGTTT
8422968 CGATTTTAAG
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
56 7 0.13
57 18 0.33
58 26 0.47
59 4 0.07
ACGTcount: A:0.17, C:0.03, G:0.34, T:0.45
Consensus pattern (58 bp):
GGGTTTAGAGGTTTTAAGATTTAGTTTCAAGTTTGGAGGATTTAGGGGTTCGATTTTA
Found at i:8422974 original size:14 final size:15
Alignment explanation
Indices: 8422886--8422981 Score: 51
Period size: 14 Copynumber: 6.7 Consensus size: 15
8422876 GTTTGGAGGA
8422886 TTTAGGGTTTCGA-T
1 TTTAGGGTTTCGAGT
*
8422900 TTTGGGGTTT-GAGGT
1 TTTAGGGTTTCGA-GT
* * *
8422915 TTTAAGATTTTGA-T
1 TTTAGGGTTTCGAGT
* * *
8422929 TTCAAGGTTT-GAGG
1 TTTAGGGTTTCGAGT
*
8422943 TTT-GGGGTTCGAAGT
1 TTTAGGGTTTCG-AGT
8422958 TTTAGGGTTTCGA-T
1 TTTAGGGTTTCGAGT
*
8422972 TTTAAGGTTT
1 TTTAGGGTTT
8422982 GGAAGGCTTA
Statistics
Matches: 62, Mismatches: 13, Indels: 14
0.70 0.15 0.16
Matches are distributed among these distances:
13 8 0.13
14 31 0.50
15 14 0.23
16 9 0.15
ACGTcount: A:0.17, C:0.04, G:0.31, T:0.48
Consensus pattern (15 bp):
TTTAGGGTTTCGAGT
Found at i:8423146 original size:9 final size:9
Alignment explanation
Indices: 8423132--8423255 Score: 167
Period size: 9 Copynumber: 13.8 Consensus size: 9
8423122 CTATGGAAAT
8423132 TTATTATTA
1 TTATTATTA
*
8423141 TTATTAATA
1 TTATTATTA
*
8423150 TTATTAATA
1 TTATTATTA
*
8423159 TTATTAATA
1 TTATTATTA
*
8423168 TTATTAATA
1 TTATTATTA
*
8423177 TTATTAATA
1 TTATTATTA
8423186 TTATTATTA
1 TTATTATTA
*
8423195 ATATTATTA
1 TTATTATTA
*
8423204 ATATTATTA
1 TTATTATTA
*
8423213 ATATTATTA
1 TTATTATTA
*
8423222 TTAATATTA
1 TTATTATTA
8423231 TTATTATTA
1 TTATTATTA
8423240 TTATTATTA
1 TTATTATTA
8423249 TTATTAT
1 TTATTAT
8423256 CTTTTTTATA
Statistics
Matches: 109, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 109 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (9 bp):
TTATTATTA
Found at i:8423153 original size:12 final size:12
Alignment explanation
Indices: 8423136--8423255 Score: 135
Period size: 12 Copynumber: 10.5 Consensus size: 12
8423126 GGAAATTTAT
8423136 TATTATTATTAA
1 TATTATTATTAA
* *
8423148 TATTATTAATAT
1 TATTATTATTAA
* *
8423160 TATTAATATTAT
1 TATTATTATTAA
*
8423172 TAATATTATTAA
1 TATTATTATTAA
8423184 TATTATTATT-A
1 TATTATTATTAA
8423195 -A-TATTATT-A
1 TATTATTATTAA
8423204 -A-TATTATTAA
1 TATTATTATTAA
8423214 TATTATTATTAA
1 TATTATTATTAA
*
8423226 TATTATTATTAT
1 TATTATTATTAA
*
8423238 TATTATTATTAT
1 TATTATTATTAA
8423250 TATTAT
1 TATTAT
8423256 CTTTTTTATA
Statistics
Matches: 96, Mismatches: 9, Indels: 6
0.86 0.08 0.05
Matches are distributed among these distances:
9 16 0.17
10 2 0.02
11 2 0.02
12 76 0.79
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (12 bp):
TATTATTATTAA
Found at i:8423254 original size:30 final size:30
Alignment explanation
Indices: 8423136--8423251 Score: 157
Period size: 30 Copynumber: 4.0 Consensus size: 30
8423126 GGAAATTTAT
8423136 TATTATTATTAATATTATTAATATTATT-A
1 TATTATTATTAATATTATTAATATTATTAA
*
8423165 -A-TATTATTAATATTATTAATATTATTAT
1 TATTATTATTAATATTATTAATATTATTAA
* *
8423193 TAATATTATTAATATTATTAATATTATTAT
1 TATTATTATTAATATTATTAATATTATTAA
* * *
8423223 TAATATTATTATTATTATTATTATTATTA
1 TATTATTATTAATATTATTAATATTATTA
8423252 TTATCTTTTT
Statistics
Matches: 81, Mismatches: 3, Indels: 5
0.91 0.03 0.06
Matches are distributed among these distances:
27 25 0.31
28 1 0.01
29 1 0.01
30 54 0.67
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (30 bp):
TATTATTATTAATATTATTAATATTATTAA
Found at i:8423452 original size:3 final size:3
Alignment explanation
Indices: 8423446--8423501 Score: 85
Period size: 3 Copynumber: 18.0 Consensus size: 3
8423436 TCCTATTTTG
8423446 TTA TTA TTAA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTAA
1 TTA TTA TT-A TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A
*
8423493 TTT TTA TTA
1 TTA TTA TTA
8423502 CAAAAAAACA
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
3 43 0.88
4 6 0.12
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:8424731 original size:21 final size:19
Alignment explanation
Indices: 8424692--8424742 Score: 57
Period size: 21 Copynumber: 2.6 Consensus size: 19
8424682 TTTTGTTTTA
*
8424692 TTTTAATTAATTAATTAAT
1 TTTTAATAAATTAATTAAT
8424711 TTTTAATAAATTATTATTAAT
1 TTTTAATAAATTA--ATTAAT
* *
8424732 ATCTAATAAAT
1 TTTTAATAAAT
8424743 AATAAAAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 12 0.44
21 15 0.56
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAATAAATTAATTAAT
Found at i:8424889 original size:22 final size:22
Alignment explanation
Indices: 8424864--8424905 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8424854 TGGTATCTAC
*
8424864 AATAGTAAATCACTAATAATGT
1 AATAGCAAATCACTAATAATGT
*
8424886 AATAGCAAATTACTAATAAT
1 AATAGCAAATCACTAATAAT
8424906 TTAGTTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.52, C:0.10, G:0.07, T:0.31
Consensus pattern (22 bp):
AATAGCAAATCACTAATAATGT
Found at i:8424932 original size:12 final size:12
Alignment explanation
Indices: 8424899--8424941 Score: 54
Period size: 12 Copynumber: 3.8 Consensus size: 12
8424889 AGCAAATTAC
8424899 TAAT-AATTTAG
1 TAATAAATTTAG
*
8424910 TTATAAA-TTAG
1 TAATAAATTTAG
*
8424921 TGATAAATTTAG
1 TAATAAATTTAG
8424933 TAATAAATT
1 TAATAAATT
8424942 AGTTAATTAC
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 13 0.48
12 14 0.52
ACGTcount: A:0.47, C:0.00, G:0.09, T:0.44
Consensus pattern (12 bp):
TAATAAATTTAG
Found at i:8424948 original size:12 final size:11
Alignment explanation
Indices: 8424892--8424944 Score: 61
Period size: 11 Copynumber: 4.7 Consensus size: 11
8424882 ATGTAATAGC
*
8424892 AAATTACTAAT
1 AAATTAGTAAT
* *
8424903 AATTTAGTTAT
1 AAATTAGTAAT
*
8424914 AAATTAGTGAT
1 AAATTAGTAAT
8424925 AAATTTAGTAAT
1 AAA-TTAGTAAT
8424937 AAATTAGT
1 AAATTAGT
8424945 TAATTACTGA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
11 25 0.71
12 10 0.29
ACGTcount: A:0.47, C:0.02, G:0.09, T:0.42
Consensus pattern (11 bp):
AAATTAGTAAT
Found at i:8425034 original size:22 final size:23
Alignment explanation
Indices: 8425008--8425070 Score: 78
Period size: 22 Copynumber: 2.9 Consensus size: 23
8424998 TAACTTTATA
8425008 ATAAATCATTAATAACTTAATTG
1 ATAAATCATTAATAACTTAATTG
**
8425031 -TAAATCACCAATAA--TAATTG
1 ATAAATCATTAATAACTTAATTG
*
8425051 ATAAATCATTCATAACTTAA
1 ATAAATCATTAATAACTTAA
8425071 CGACAAATCC
Statistics
Matches: 32, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
20 6 0.19
21 11 0.34
22 12 0.38
23 3 0.09
ACGTcount: A:0.49, C:0.13, G:0.03, T:0.35
Consensus pattern (23 bp):
ATAAATCATTAATAACTTAATTG
Found at i:8425606 original size:67 final size:65
Alignment explanation
Indices: 8425516--8425650 Score: 148
Period size: 67 Copynumber: 2.0 Consensus size: 65
8425506 AAATTAGTGA
* * * **
8425516 TTAATAGTAAATCGATTTCAATTTAATAG-TAATTAATTGATAAATTTAGTAGTAAATCATAAAT
1 TTAATAGTAAATCAATATCAATTTAATAGTTAA-TAATT-AAAAATTTAAAAGTAAATCA-AAAT
8425580 AAC
63 AAC
* * *
8425583 TTAATAGTAAATCAATAAT-AATTTAGTAGTTAATCATTAAAAATTTAAAAGTAAATCAATATAA
1 TTAATAGTAAATCAAT-ATCAATTTAATAGTTAATAATTAAAAATTTAAAAGTAAATCAAAATAA
8425647 C
65 C
8425648 TTA
1 TTA
8425651 GTAGCAGTTA
Statistics
Matches: 58, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
65 9 0.16
66 17 0.29
67 28 0.48
68 4 0.07
ACGTcount: A:0.49, C:0.06, G:0.07, T:0.38
Consensus pattern (65 bp):
TTAATAGTAAATCAATATCAATTTAATAGTTAATAATTAAAAATTTAAAAGTAAATCAAAATAAC
Found at i:8425895 original size:22 final size:22
Alignment explanation
Indices: 8425535--8426132 Score: 143
Period size: 22 Copynumber: 27.1 Consensus size: 22
8425525 AATCGATTTC
* * *
8425535 AATTTAATAGTAATTAATTGAT
1 AATTTAGTAGTAAATCATTGAT
**
8425557 AAATTTAGTAGTAAATCATAAAT
1 -AATTTAGTAGTAAATCATTGAT
* * * *
8425580 AACTTAATAGTAAATCAATAAT
1 AATTTAGTAGTAAATCATTGAT
* * *
8425602 AATTTAGTAGTTAATCATTAAA
1 AATTTAGTAGTAAATCATTGAT
** *
8425624 AATTTAAAAGTAAATCAAT-AT
1 AATTTAGTAGTAAATCATTGAT
* * * *
8425645 AACTTAGTAGCAGTTAATTAATGAT
1 AA-TT--TAGTAGTAAATCATTGAT
* * * *
8425670 AACTT-GATAGTAAATTATAGAG
1 AATTTAG-TAGTAAATCATTGAT
* * * *
8425692 AATTTAATA-TAAATAAATAAT
1 AATTTAGTAGTAAATCATTGAT
* * * *
8425713 AACTT-GATAATGAATC-TTGGTT
1 AATTTAG-TAGTAAATCATT-GAT
* * *
8425735 AATTTTGTAATAAATC-TATGGT
1 AATTTAGTAGTAAATCAT-TGAT
* * * *
8425757 GACTTTA-TAGTAAATAATCGAA
1 -AATTTAGTAGTAAATCATTGAT
* * * *
8425779 AACTAAGTAGTAAATTAATGAT
1 AATTTAGTAGTAAATCATTGAT
* *
8425801 AATATAGTAGTAAATGCA-TAAT
1 AATTTAGTAGTAAAT-CATTGAT
** *
8425823 AACATAATAGTAAATCATTGAT
1 AATTTAGTAGTAAATCATTGAT
*
8425845 AATTTAG-ATGTAAATTATTGAT
1 AATTTAGTA-GTAAATCATTGAT
* *
8425867 AACTTAGTAGTAAATCATTAAT
1 AATTTAGTAGTAAATCATTGAT
* * *
8425889 AATTTAGTTGTAAATAAGTGAT
1 AATTTAGTAGTAAATCATTGAT
* *
8425911 AA-TTAGTAGCAAATTAGTTCATCATTAT
1 AATTTAGTAG-TAA--A--TCAT--TGAT
* *
8425939 AACTTTGTAGTAAATCATTGAT
1 AATTTAGTAGTAAATCATTGAT
* ** *
8425961 AAATTAAAAATAAATCAATTG-T
1 AATTTAGTAGTAAATC-ATTGAT
**
8425983 AACTTT-GTAACAAATC----AT
1 AA-TTTAGTAGTAAATCATTGAT
* * * * *
8426001 CAGTTAGTAGCAAATCATTAAC
1 AATTTAGTAGTAAATCATTGAT
* * * * *
8426023 AATTTATTAGTAAGTTAGTCAT
1 AATTTAGTAGTAAATCATTGAT
* * * *
8426045 AA-TTAGTAAT-AATAAATGTT
1 AATTTAGTAGTAAATCATTGAT
*
8426065 AATTTAGTAGTAAATCATTAAT
1 AATTTAGTAGTAAATCATTGAT
* * *
8426087 AATTTAGTAATAATTCAATGAT
1 AATTTAGTAGTAAATCATTGAT
* *
8426109 AGTTTAATAGTAAATCATTGAT
1 AATTTAGTAGTAAATCATTGAT
8426131 AA
1 AA
8426133 CATAATAGTA
Statistics
Matches: 407, Mismatches: 132, Indels: 73
0.67 0.22 0.12
Matches are distributed among these distances:
17 2 0.00
18 11 0.03
20 7 0.02
21 43 0.11
22 275 0.68
23 32 0.08
24 17 0.04
25 4 0.01
26 3 0.01
28 7 0.02
29 6 0.01
ACGTcount: A:0.46, C:0.06, G:0.11, T:0.37
Consensus pattern (22 bp):
AATTTAGTAGTAAATCATTGAT
Found at i:8425902 original size:66 final size:66
Alignment explanation
Indices: 8425788--8425914 Score: 159
Period size: 66 Copynumber: 1.9 Consensus size: 66
8425778 AAACTAAGTA
* *
8425788 GTAAATTAATGATAATATAGTAGTAAATGCATAATAACATAATAGTAAATCATTGATAATTTAGA
1 GTAAATTAATGATAATATAGTAGTAAATGCATAATAACATAATAGTAAATAAGTGATAATTTAGA
8425853 T
66 T
* ** * *
8425854 GTAAATTATTGATAACT-TAGTAGTAAAT-CATTAATAATTTAGTTGTAAATAAGTGATAATT
1 GTAAATTAATGATAA-TATAGTAGTAAATGCA-TAATAACATAATAGTAAATAAGTGATAATT
8425915 AGTAGCAAAT
Statistics
Matches: 52, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
65 2 0.04
66 49 0.94
67 1 0.02
ACGTcount: A:0.46, C:0.04, G:0.13, T:0.38
Consensus pattern (66 bp):
GTAAATTAATGATAATATAGTAGTAAATGCATAATAACATAATAGTAAATAAGTGATAATTTAGA
T
Found at i:8426126 original size:44 final size:42
Alignment explanation
Indices: 8426043--8426160 Score: 119
Period size: 44 Copynumber: 2.7 Consensus size: 42
8426033 TAAGTTAGTC
* *
8426043 ATAATTAGTAATAATAAATGTTAATTTAGTAGTAAATCATTA
1 ATAATTAGTAATAATAAATGATAATTTAATAGTAAATCATTA
* * *
8426085 ATAATTTAGTAATAATTCAATGATAGTTTAATAGTAAATCATTG
1 ATAA-TTAGTAATAA-TAAATGATAATTTAATAGTAAATCATTA
* * * *
8426129 ATAACATAATAGTAAATAAATGATAACTTAAT
1 ATAA-TTAGTAAT-AATAAATGATAATTTAAT
8426161 TGTCAATATT
Statistics
Matches: 61, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
42 4 0.07
43 10 0.16
44 45 0.74
45 2 0.03
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.38
Consensus pattern (42 bp):
ATAATTAGTAATAATAAATGATAATTTAATAGTAAATCATTA
Found at i:8426138 original size:22 final size:21
Alignment explanation
Indices: 8426113--8426175 Score: 72
Period size: 22 Copynumber: 2.9 Consensus size: 21
8426103 AATGATAGTT
8426113 TAATAGTAAATCATTGATAACA
1 TAATAGTAAAT-ATTGATAACA
* *
8426135 TAATAGTAAATAAATGATAACT
1 TAATAGTAAAT-ATTGATAACA
* *
8426157 TAATTGTCAATATTGATAA
1 TAATAGTAAATATTGATAA
8426176 ATTTTTTTAT
Statistics
Matches: 35, Mismatches: 6, Indels: 1
0.83 0.14 0.02
Matches are distributed among these distances:
21 7 0.20
22 28 0.80
ACGTcount: A:0.49, C:0.06, G:0.10, T:0.35
Consensus pattern (21 bp):
TAATAGTAAATATTGATAACA
Found at i:8426942 original size:32 final size:33
Alignment explanation
Indices: 8426900--8426962 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
8426890 CATACATAAA
*
8426900 AAACCTTGCCAGAAA-AAAAAAAACAAAAAAAT
1 AAACCTTGCCAAAAAGAAAAAAAACAAAAAAAT
* *
8426932 AAACTTTGCCAAAAAGAAAAAAAACCAAAAA
1 AAACCTTGCCAAAAAGAAAAAAAACAAAAAA
8426963 GCCAAATATA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
32 13 0.48
33 14 0.52
ACGTcount: A:0.68, C:0.16, G:0.06, T:0.10
Consensus pattern (33 bp):
AAACCTTGCCAAAAAGAAAAAAAACAAAAAAAT
Found at i:8427547 original size:31 final size:33
Alignment explanation
Indices: 8427512--8427575 Score: 87
Period size: 31 Copynumber: 2.0 Consensus size: 33
8427502 TTATAATTTC
*
8427512 AAAAACTATATCATAA-GTTA-TAAAATATTAT
1 AAAAACTATATCAAAAGGTTACTAAAATATTAT
* *
8427543 AAAAATTATATCAAAAGGTTACTAAAATTTTAT
1 AAAAACTATATCAAAAGGTTACTAAAATATTAT
8427576 TATAAAAATT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
31 14 0.50
32 4 0.14
33 10 0.36
ACGTcount: A:0.53, C:0.06, G:0.05, T:0.36
Consensus pattern (33 bp):
AAAAACTATATCAAAAGGTTACTAAAATATTAT
Found at i:8427636 original size:21 final size:21
Alignment explanation
Indices: 8427539--8427676 Score: 84
Period size: 21 Copynumber: 6.4 Consensus size: 21
8427529 TTATAAAATA
*
8427539 TTATAAAAATTATATCAAAAGG
1 TTATCAAAATTATATCAAAA-G
*
8427561 TTA-CTAAAATTTTATTAT-AAAAA
1 TTATC-AAAA--TTA-TATCAAAAG
* * **
8427584 TTAGCAAAATTGTATCAATGG
1 TTATCAAAATTATATCAAAAG
* *
8427605 TTACCATAATTATATCATAAA-
1 TTATCAAAATTATATCA-AAAG
*
8427626 TTATCAAAATTCTATCAAAAG
1 TTATCAAAATTATATCAAAAG
* * * *
8427647 ATGTCAAAATTTTGTCAAAAG
1 TTATCAAAATTATATCAAAAG
8427668 TTATCAAAA
1 TTATCAAAA
8427677 CAAAAATTAT
Statistics
Matches: 88, Mismatches: 20, Indels: 17
0.70 0.16 0.14
Matches are distributed among these distances:
20 6 0.07
21 56 0.64
22 8 0.09
23 7 0.08
24 8 0.09
25 3 0.03
ACGTcount: A:0.48, C:0.09, G:0.07, T:0.36
Consensus pattern (21 bp):
TTATCAAAATTATATCAAAAG
Found at i:8428344 original size:16 final size:16
Alignment explanation
Indices: 8428324--8428363 Score: 55
Period size: 15 Copynumber: 2.5 Consensus size: 16
8428314 CTTAAAAAAA
8428324 AAAAAAACAAAAAGCCC
1 AAAAAAACAAAAAG-CC
*
8428341 AAAACAA-AAAAAGCC
1 AAAAAAACAAAAAGCC
8428356 AAAAAAAC
1 AAAAAAAC
8428364 CACAAAAAAA
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
15 8 0.40
16 6 0.30
17 6 0.30
ACGTcount: A:0.75, C:0.20, G:0.05, T:0.00
Consensus pattern (16 bp):
AAAAAAACAAAAAGCC
Found at i:8428373 original size:24 final size:23
Alignment explanation
Indices: 8428318--8428376 Score: 64
Period size: 24 Copynumber: 2.5 Consensus size: 23
8428308 AGAAACCTTA
**
8428318 AAAAAAAAAAAAACAAAAAGCCC
1 AAAAAAAAAAAAACAAAAAAACC
**
8428341 AAAACAAAAAAAGCCAAAAAAACC
1 AAAA-AAAAAAAAACAAAAAAACC
*
8428365 ACAAAAAAAAAA
1 AAAAAAAAAAAA
8428377 TCCCCACAAC
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
23 11 0.38
24 18 0.62
ACGTcount: A:0.80, C:0.17, G:0.03, T:0.00
Consensus pattern (23 bp):
AAAAAAAAAAAAACAAAAAAACC
Found at i:8429096 original size:22 final size:21
Alignment explanation
Indices: 8429071--8429117 Score: 67
Period size: 21 Copynumber: 2.1 Consensus size: 21
8429061 AAAATTAAAT
*
8429071 AAAAATAAAATAAAAAAATGACA
1 AAAAAT-AAAT-AAAAAATAACA
8429094 AAAAATAAATAAAAAATAACA
1 AAAAATAAATAAAAAATAACA
8429115 AAA
1 AAA
8429118 TGTAGGAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 13 0.57
22 4 0.17
23 6 0.26
ACGTcount: A:0.81, C:0.04, G:0.02, T:0.13
Consensus pattern (21 bp):
AAAAATAAATAAAAAATAACA
Found at i:8430678 original size:21 final size:22
Alignment explanation
Indices: 8430636--8430682 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
8430626 AATACTTTTT
*
8430636 ATTTATTATTTCATTTAACTTA
1 ATTTATTATATCATTTAACTTA
**
8430658 ATTTATTATAT-ATTTGTCTTA
1 ATTTATTATATCATTTAACTTA
8430679 ATTT
1 ATTT
8430683 TTGTATCCTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 12 0.55
22 10 0.45
ACGTcount: A:0.30, C:0.06, G:0.02, T:0.62
Consensus pattern (22 bp):
ATTTATTATATCATTTAACTTA
Found at i:8436179 original size:32 final size:31
Alignment explanation
Indices: 8436137--8436198 Score: 79
Period size: 32 Copynumber: 2.0 Consensus size: 31
8436127 ATCTAAGCCT
* **
8436137 TTTTTAAAATCTCTTGGTAGTGATATTTGAA
1 TTTTTAAAATCACTCAGTAGTGATATTTGAA
*
8436168 TTTTTACAAATCACTCAGTGGTGATATTTGA
1 TTTTTA-AAATCACTCAGTAGTGATATTTGA
8436199 GTATCTAAGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 6 0.23
32 20 0.77
ACGTcount: A:0.29, C:0.10, G:0.16, T:0.45
Consensus pattern (31 bp):
TTTTTAAAATCACTCAGTAGTGATATTTGAA
Found at i:8436338 original size:57 final size:57
Alignment explanation
Indices: 8436226--8436361 Score: 150
Period size: 57 Copynumber: 2.4 Consensus size: 57
8436216 TGTATAACTA
* * * * *
8436226 TCTTCGGTGGTAATATTCGAAGACATTTATATTTTTTTGATGATGATATTTGAGTTC
1 TCTTCGATGGTAATATCCAAAGACATTTACATTTTTTTGATGATGATATTCGAGTTC
* * *
8436283 TCTTCGATGGTGATATCCAAAGACATTTACATTTTTTTGGTG-TCGATGTTCGAGTTC
1 TCTTCGATGGTAATATCCAAAGACATTTACATTTTTTTGATGAT-GATATTCGAGTTC
* *
8436340 CCTT-TAGTGGTAATATCCAAAG
1 TCTTCGA-TGGTAATATCCAAAG
8436362 TTATCTACAT
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
56 2 0.03
57 64 0.97
ACGTcount: A:0.24, C:0.13, G:0.20, T:0.43
Consensus pattern (57 bp):
TCTTCGATGGTAATATCCAAAGACATTTACATTTTTTTGATGATGATATTCGAGTTC
Found at i:8436777 original size:10 final size:9
Alignment explanation
Indices: 8436764--8436828 Score: 53
Period size: 10 Copynumber: 6.8 Consensus size: 9
8436754 TTTTTTTTTT
8436764 TAAATAAAAA
1 TAAA-AAAAA
*
8436774 TAAAAAAAT
1 TAAAAAAAA
8436783 TGAAAAAAAA
1 T-AAAAAAAA
8436793 TCCAAAAATAAA
1 T--AAAAA-AAA
8436805 -ATAAAAAAA
1 TA-AAAAAAA
8436814 T-AAAAAAA
1 TAAAAAAAA
8436822 TAAAAAA
1 TAAAAAA
8436829 TTTAAAAGTT
Statistics
Matches: 46, Mismatches: 3, Indels: 13
0.74 0.05 0.21
Matches are distributed among these distances:
8 8 0.17
9 14 0.30
10 16 0.35
11 5 0.11
12 3 0.07
ACGTcount: A:0.80, C:0.03, G:0.02, T:0.15
Consensus pattern (9 bp):
TAAAAAAAA
Found at i:8436780 original size:8 final size:8
Alignment explanation
Indices: 8436769--8436828 Score: 54
Period size: 8 Copynumber: 7.5 Consensus size: 8
8436759 TTTTTTAAAT
8436769 AAAAATAA
1 AAAAATAA
8436777 AAAAATTGAAA
1 AAAAA-T--AA
**
8436788 AAAAATCC
1 AAAAATAA
8436796 AAAAAT--
1 AAAAATAA
8436802 A-AAATAA
1 AAAAATAA
8436809 AAAAATAA
1 AAAAATAA
8436817 AAAAATAA
1 AAAAATAA
8436825 AAAA
1 AAAA
8436829 TTTAAAAGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
5 4 0.09
6 1 0.02
7 1 0.02
8 29 0.66
9 1 0.02
10 1 0.02
11 7 0.16
ACGTcount: A:0.82, C:0.03, G:0.02, T:0.13
Consensus pattern (8 bp):
AAAAATAA
Found at i:8436810 original size:21 final size:21
Alignment explanation
Indices: 8436769--8436826 Score: 66
Period size: 21 Copynumber: 2.9 Consensus size: 21
8436759 TTTTTTAAAT
**
8436769 AAAAATAAAAAAAT-TGA-AA
1 AAAAATAAAAAAATAAAATAA
**
8436788 AAAAATCCAAAAATAAAATAA
1 AAAAATAAAAAAATAAAATAA
8436809 AAAAATAAAAAAATAAAA
1 AAAAATAAAAAAATAAAA
8436827 AATTTAAAAG
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
19 12 0.39
20 1 0.03
21 18 0.58
ACGTcount: A:0.81, C:0.03, G:0.02, T:0.14
Consensus pattern (21 bp):
AAAAATAAAAAAATAAAATAA
Found at i:8436835 original size:24 final size:24
Alignment explanation
Indices: 8436808--8436853 Score: 56
Period size: 24 Copynumber: 1.9 Consensus size: 24
8436798 AAATAAAATA
8436808 AAAAAATAAAAAAATAAAAAATTT
1 AAAAAATAAAAAAATAAAAAATTT
** * *
8436832 AAAAGTTTAAAAAATAATAAAT
1 AAAAAATAAAAAAATAAAAAAT
8436854 ATATGTGTGA
Statistics
Matches: 18, Mismatches: 4, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
24 18 1.00
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.24
Consensus pattern (24 bp):
AAAAAATAAAAAAATAAAAAATTT
Found at i:8437507 original size:6 final size:6
Alignment explanation
Indices: 8437496--8437525 Score: 51
Period size: 6 Copynumber: 4.8 Consensus size: 6
8437486 CAGAAACCAA
8437496 AAAAAT AAAAAT AAAAAAT AAAAAT AAAAA
1 AAAAAT AAAAAT -AAAAAT AAAAAT AAAAA
8437526 GCATAAACCA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
6 17 0.74
7 6 0.26
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (6 bp):
AAAAAT
Found at i:8437513 original size:13 final size:13
Alignment explanation
Indices: 8437495--8437525 Score: 62
Period size: 13 Copynumber: 2.4 Consensus size: 13
8437485 ACAGAAACCA
8437495 AAAAAATAAAAAT
1 AAAAAATAAAAAT
8437508 AAAAAATAAAAAT
1 AAAAAATAAAAAT
8437521 AAAAA
1 AAAAA
8437526 GCATAAACCA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (13 bp):
AAAAAATAAAAAT
Found at i:8437556 original size:16 final size:16
Alignment explanation
Indices: 8437536--8437567 Score: 55
Period size: 16 Copynumber: 1.9 Consensus size: 16
8437526 GCATAAACCA
8437536 AAAAAGCCAAAAATAAC
1 AAAAA-CCAAAAATAAC
8437553 AAAAACCAAAAATAA
1 AAAAACCAAAAATAA
8437568 TCATCACAAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.75, C:0.16, G:0.03, T:0.06
Consensus pattern (16 bp):
AAAAACCAAAAATAAC
Found at i:8438333 original size:15 final size:15
Alignment explanation
Indices: 8438313--8438347 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8438303 CTTTAAAAAT
*
8438313 AAAATAAAAAATGAC
1 AAAATAAAAAATAAC
*
8438328 AAAATAATAAATAAC
1 AAAATAAAAAATAAC
8438343 AAAAT
1 AAAAT
8438348 GTAGGAAATG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.74, C:0.06, G:0.03, T:0.17
Consensus pattern (15 bp):
AAAATAAAAAATAAC
Found at i:8447467 original size:41 final size:44
Alignment explanation
Indices: 8447420--8447512 Score: 131
Period size: 42 Copynumber: 2.2 Consensus size: 44
8447410 AACATTTTAT
* *
8447420 ATAATTATGACC-TTTATGA-ATAATAATCTATTTATATTC-AA-
1 ATAATTATAACCATTTATCATATAATAAT-TATTTATATTCAAAC
8447461 ATAATTATAACCATTTATCATATAATAATTATTTATATTCAAAC
1 ATAATTATAACCATTTATCATATAATAATTATTTATATTCAAAC
8447505 ATAATTAT
1 ATAATTAT
8447513 TGAAAATATG
Statistics
Matches: 46, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
41 11 0.24
42 17 0.37
43 10 0.22
44 8 0.17
ACGTcount: A:0.44, C:0.10, G:0.02, T:0.44
Consensus pattern (44 bp):
ATAATTATAACCATTTATCATATAATAATTATTTATATTCAAAC
Found at i:8447965 original size:12 final size:13
Alignment explanation
Indices: 8447950--8447982 Score: 52
Period size: 12 Copynumber: 2.7 Consensus size: 13
8447940 TTTTTATTTT
8447950 TTTTATTTTA-AC
1 TTTTATTTTATAC
8447962 TTTTATTTTATAC
1 TTTTATTTTATAC
8447975 -TTTATTTT
1 TTTTATTTT
8447983 TTCAAACCAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
12 18 0.90
13 2 0.10
ACGTcount: A:0.21, C:0.06, G:0.00, T:0.73
Consensus pattern (13 bp):
TTTTATTTTATAC
Found at i:8448053 original size:35 final size:35
Alignment explanation
Indices: 8447966--8448055 Score: 128
Period size: 35 Copynumber: 2.5 Consensus size: 35
8447956 TTTAACTTTT
*
8447966 ATTTTATACTTTATTTTTTCAAACCAAAGTTTATA
1 ATTTTATAGTTTATTTTTTCAAACCAAAGTTTATA
*
8448001 ATTTTATATTTTATTTTTTCAAACCAAAGTTTATA
1 ATTTTATAGTTTATTTTTTCAAACCAAAGTTTATA
*
8448036 AGTATTT-TAGTTTTTTTTTT
1 A-T-TTTATAGTTTATTTTTT
8448056 TTTTAAGAAA
Statistics
Matches: 50, Mismatches: 3, Indels: 3
0.89 0.05 0.05
Matches are distributed among these distances:
35 35 0.70
36 12 0.24
37 3 0.06
ACGTcount: A:0.30, C:0.08, G:0.04, T:0.58
Consensus pattern (35 bp):
ATTTTATAGTTTATTTTTTCAAACCAAAGTTTATA
Found at i:8448054 original size:36 final size:35
Alignment explanation
Indices: 8447966--8448036 Score: 133
Period size: 35 Copynumber: 2.0 Consensus size: 35
8447956 TTTAACTTTT
*
8447966 ATTTTATACTTTATTTTTTCAAACCAAAGTTTATA
1 ATTTTATATTTTATTTTTTCAAACCAAAGTTTATA
8448001 ATTTTATATTTTATTTTTTCAAACCAAAGTTTATA
1 ATTTTATATTTTATTTTTTCAAACCAAAGTTTATA
8448036 A
1 A
8448037 GTATTTTAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 35 1.00
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.52
Consensus pattern (35 bp):
ATTTTATATTTTATTTTTTCAAACCAAAGTTTATA
Found at i:8450206 original size:15 final size:16
Alignment explanation
Indices: 8450188--8450217 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
8450178 ATTCATAATA
8450188 TTATTAT-ATCTTATT
1 TTATTATAATCTTATT
8450203 TTATTATAATCTTAT
1 TTATTATAATCTTAT
8450218 GCATTAAATA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 7 0.50
16 7 0.50
ACGTcount: A:0.30, C:0.07, G:0.00, T:0.63
Consensus pattern (16 bp):
TTATTATAATCTTATT
Found at i:8451025 original size:22 final size:22
Alignment explanation
Indices: 8450982--8451025 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
8450972 AAAGAAATCT
*
8450982 TATTTTTTAAAAAAGTTCAAAA
1 TATTTTTTAAAAAAGTTAAAAA
**
8451004 TATTTTTTAAAAATTTTAAAAA
1 TATTTTTTAAAAAAGTTAAAAA
8451026 ATCTACAAAA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.45
Consensus pattern (22 bp):
TATTTTTTAAAAAAGTTAAAAA
Found at i:8451140 original size:19 final size:19
Alignment explanation
Indices: 8451116--8451153 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
8451106 TCCCAAAGAT
* *
8451116 TTTAAAAAATAAGAAAATA
1 TTTAAAAAAGAAAAAAATA
8451135 TTTAAAAAAGAAAAAAATA
1 TTTAAAAAAGAAAAAAATA
8451154 AAAAATAAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (19 bp):
TTTAAAAAAGAAAAAAATA
Found at i:8452024 original size:21 final size:22
Alignment explanation
Indices: 8451987--8452027 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
8451977 TTTTAATAAT
8451987 TTTTAAATTTTTCAGAAAATTA
1 TTTTAAATTTTTCAGAAAATTA
*
8452009 TTTTGAATTTTT-AGAAAAT
1 TTTTAAATTTTTCAGAAAAT
8452028 GTTCAGATTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.39, C:0.02, G:0.07, T:0.51
Consensus pattern (22 bp):
TTTTAAATTTTTCAGAAAATTA
Found at i:8452559 original size:27 final size:29
Alignment explanation
Indices: 8452529--8452596 Score: 81
Period size: 27 Copynumber: 2.5 Consensus size: 29
8452519 GTGACATAAA
*
8452529 AATAAATTTTTAAATAT-CATATTA-ATT
1 AATAAATTTTTAAATATAAATATTATATT
* *
8452556 AATAAATTTAT-AATTTAAATATTATATT
1 AATAAATTTTTAAATATAAATATTATATT
8452584 AA-AAATTTTTAAA
1 AATAAATTTTTAAA
8452597 GTTAAAATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
26 4 0.12
27 23 0.68
28 7 0.21
ACGTcount: A:0.51, C:0.01, G:0.00, T:0.47
Consensus pattern (29 bp):
AATAAATTTTTAAATATAAATATTATATT
Found at i:8452605 original size:29 final size:27
Alignment explanation
Indices: 8452529--8452607 Score: 70
Period size: 27 Copynumber: 2.9 Consensus size: 27
8452519 GTGACATAAA
* * **
8452529 AATAAATTTTTAAATATCATATTAATT
1 AATAAATTTATAATTAAAATATTAATT
*
8452556 AATAAATTTATAATTTAAATATTATATT
1 AATAAATTTATAATTAAAATATTA-ATT
*
8452584 AA-AAATTTTTAAAGTTAAAATATT
1 AATAAATTTAT-AA-TTAAAATATT
8452608 GCATTAACTA
Statistics
Matches: 42, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
27 26 0.62
28 7 0.17
29 9 0.21
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (27 bp):
AATAAATTTATAATTAAAATATTAATT
Found at i:8453188 original size:1 final size:1
Alignment explanation
Indices: 8453182--8453216 Score: 52
Period size: 1 Copynumber: 35.0 Consensus size: 1
8453172 ATTTCAAAGC
* *
8453182 AAAAAAAAAAAAAAAAAAAAAGAAAAGAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
8453217 TAGAGTAACA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
1 30 1.00
ACGTcount: A:0.94, C:0.00, G:0.06, T:0.00
Consensus pattern (1 bp):
A
Found at i:8460165 original size:29 final size:29
Alignment explanation
Indices: 8460123--8460191 Score: 120
Period size: 29 Copynumber: 2.4 Consensus size: 29
8460113 AACCGGTAAT
* *
8460123 CTCTGGCATGGACCTTACCTTCGAATTTC
1 CTCTGCCAAGGACCTTACCTTCGAATTTC
8460152 CTCTGCCAAGGACCTTACCTTCGAATTTC
1 CTCTGCCAAGGACCTTACCTTCGAATTTC
8460181 CTCTGCCAAGG
1 CTCTGCCAAGG
8460192 TCAAATAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 38 1.00
ACGTcount: A:0.19, C:0.33, G:0.17, T:0.30
Consensus pattern (29 bp):
CTCTGCCAAGGACCTTACCTTCGAATTTC
Found at i:8462673 original size:15 final size:14
Alignment explanation
Indices: 8462638--8462677 Score: 53
Period size: 15 Copynumber: 2.8 Consensus size: 14
8462628 ATAATTTTAA
*
8462638 ATAATATTTTAATT
1 ATAATATTATAATT
8462652 ATAATATTATAATTT
1 ATAATATTATAA-TT
*
8462667 CTAATATTATA
1 ATAATATTATA
8462678 GTTAACTACA
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 11 0.48
15 12 0.52
ACGTcount: A:0.45, C:0.03, G:0.00, T:0.53
Consensus pattern (14 bp):
ATAATATTATAATT
Found at i:8466925 original size:25 final size:25
Alignment explanation
Indices: 8466896--8466944 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
8466886 TAAACATATC
8466896 CTAAAAATATGTCATTTTACTAGTT
1 CTAAAAATATGTCATTTTACTAGTT
*
8466921 CTAAAAATGTGTCATTTTACTAGT
1 CTAAAAATATGTCATTTTACTAGT
8466945 CCTATTTGTG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.10, T:0.43
Consensus pattern (25 bp):
CTAAAAATATGTCATTTTACTAGTT
Found at i:8467883 original size:3 final size:3
Alignment explanation
Indices: 8467869--8467993 Score: 66
Period size: 3 Copynumber: 46.7 Consensus size: 3
8467859 GTATAGTATG
* **
8467869 TTA TTA TATA TTA TTA TTA TTA -TA GTA -TA GCA -TA TTA -TA TTA
1 TTA TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
8467911 -TA TTA -TA TTA -TA TTG TT- TT- TTA TTA CTA TTA -TA TTA -TA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
* *
8467952 -TA TTA TTA -TA GTA -TA TGA -TA TTA -TA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
8467994 TTTTTAATTT
Statistics
Matches: 99, Mismatches: 7, Indels: 32
0.72 0.05 0.23
Matches are distributed among these distances:
2 30 0.30
3 66 0.67
4 3 0.03
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.59
Consensus pattern (3 bp):
TTA
Found at i:8467908 original size:5 final size:5
Alignment explanation
Indices: 8467870--8467992 Score: 108
Period size: 5 Copynumber: 24.2 Consensus size: 5
8467860 TATAGTATGT
* **
8467870 TATTA TA-TA TTATTA TTATTA TAGTA TAGCA TATTA TATTA TATTA TATTA
1 TATTA TATTA -TATTA -TATTA TATTA TATTA TATTA TATTA TATTA TATTA
* * * * *
8467921 TATTG TTTTT TATTA CTATTA TATTA TATTA TA-T- TATTA TAGTA TATGA
1 TATTA TATTA TATTA -TATTA TATTA TATTA TATTA TATTA TATTA TATTA
8467970 TATTA TATTA TTATTA TTATTA T
1 TATTA TATTA -TATTA -TATTA T
8467993 TTTTTTAATT
Statistics
Matches: 99, Mismatches: 13, Indels: 12
0.80 0.10 0.10
Matches are distributed among these distances:
3 2 0.02
4 4 0.04
5 69 0.70
6 24 0.24
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.59
Consensus pattern (5 bp):
TATTA
Found at i:8469993 original size:3 final size:3
Alignment explanation
Indices: 8469985--8470174 Score: 119
Period size: 3 Copynumber: 65.0 Consensus size: 3
8469975 AGAAAAATTG
*
8469985 AAT AAT AAT AAT AAT AAT -AC AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * *
8470032 ATAT AAT ACT -AT ACT -AT AAT ACT AAGCT -AT ACT -AT AAT AAT AAT
1 A-AT AAT AAT AAT AAT AAT AAT AAT AA--T AAT AAT AAT AAT AAT AAT
* * * * * *
8470076 AAT -AC AAT AAT AAT AAC AAT AAT AAT GAT AAT AAT GAT AAG CAT -AT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * * * * * *
8470122 TAT ACT -AT AGT -AT AAAT AAT ACT AAT AAT AAA AAA AAT AAT AGT
1 AAT AAT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
8470166 AAT AAT AAT
1 AAT AAT AAT
8470175 GATGAAAATC
Statistics
Matches: 142, Mismatches: 32, Indels: 26
0.71 0.16 0.13
Matches are distributed among these distances:
2 10 0.07
3 125 0.88
4 6 0.04
5 1 0.01
ACGTcount: A:0.59, C:0.06, G:0.03, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:8470127 original size:73 final size:75
Alignment explanation
Indices: 8469988--8470177 Score: 221
Period size: 76 Copynumber: 2.5 Consensus size: 75
8469978 AAAATTGAAT
*
8469988 AATAATAATAATAATACAATAATAATAATAATAATAATAATAATATATAATACTATACTATAATA
1 AATAATAATAATAATACAATAATAATAATAATAATAATGATAATATATAATACTATACTATAATA
8470053 CTA-AGCTATA
66 CTATAG-TATA
* * *
8470063 CTATAATAATAATAATACAATAATAATAACAATAATAATGATAATAATGATAA-GC-ATA-T-T-
1 -AATAATAATAATAATACAATAATAATAATAATAATAATGATAAT-AT-ATAATACTATACTATA
8470123 ATACTATAGTATA
63 ATACTATAGTATA
* * * *
8470136 AATAATACTAATAATAAAAAAAATAATAGTAATAATAATGAT
1 AATAATAATAATAAT-ACAATAATAATAATAATAATAATGAT
8470178 GAAAATCGAC
Statistics
Matches: 100, Mismatches: 10, Indels: 11
0.83 0.08 0.09
Matches are distributed among these distances:
72 13 0.13
73 32 0.32
74 3 0.03
75 1 0.01
76 44 0.44
77 3 0.03
78 4 0.04
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (75 bp):
AATAATAATAATAATACAATAATAATAATAATAATAATGATAATATATAATACTATACTATAATA
CTATAGTATA
Found at i:8470161 original size:76 final size:73
Alignment explanation
Indices: 8469986--8470179 Score: 193
Period size: 73 Copynumber: 2.6 Consensus size: 73
8469976 GAAAAATTGA
*
8469986 ATAATAATAATAATAATACAATAATAATAATAATAATAATAATAAT-ATATAATACTATACTATA
1 ATAATAATAATAATAATA-AA-AAAAATAATAATAATAATAATAATGATATAATACTATACTATA
8470050 ATACTAAGCT
64 ATACTAAGCT
* * * *
8470060 ATACT-ATAATAATAAT-AATACAATAATAATAACAATAATAATGATAATAATGA-TA-AGCATA
1 ATAATAATAATAATAATAAAAAAAATAATAATAATAATAATAATGAT-ATAAT-ACTATA-C-TA
*
8470121 TTATACTATAG-T
62 TAATACTA-AGCT
* * *
8470133 ATAAATAATACTAATAATAAAAAAAATAATAGTAATAATAATGATGA
1 AT-AATAATAATAATAATAAAAAAAATAATAATAATAATAATAATGA
8470180 AAATCGACCT
Statistics
Matches: 99, Mismatches: 12, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
70 21 0.21
71 5 0.05
72 8 0.08
73 24 0.24
74 8 0.08
75 10 0.10
76 23 0.23
ACGTcount: A:0.58, C:0.06, G:0.04, T:0.32
Consensus pattern (73 bp):
ATAATAATAATAATAATAAAAAAAATAATAATAATAATAATAATGATATAATACTATACTATAAT
ACTAAGCT
Found at i:8470945 original size:118 final size:119
Alignment explanation
Indices: 8470774--8471185 Score: 314
Period size: 118 Copynumber: 3.5 Consensus size: 119
8470764 AGGTTAAAGG
* * * * * * * *
8470774 TAAATGAACAAGATGAAATCACAAGTCATATGAAATGATCTGGATTGATCCAAGATCAAGTG-TT
1 TAAATGACCAAGATAAAACCACAAATCATATAAAATGATCTCGACTGAGCCAAGATCAAGTGATT
* * * *
8470838 CGGGATGAAACCACGAGTCAAAATGAAGCAACCAAGAC-AAGTTGAGATCGAAAA
66 -GAGATGAAACCACGAATCAAAATGAAGCAACCAAGACTAAGTCGAGATAGAAAA
* *
8470892 TAAATGACCCAGATAAAACCACAAATCATATAAAATGATTTCGACTGAGCCAAGATCAAGTGATT
1 TAAATGACCAAGATAAAACCACAAATCATATAAAATGATCTCGACTGAGCCAAGATCAAGTGATT
* * * * *
8470957 GAGATGAAACCATGAATTAAAATGAAGCGACCAAGACTGAGTCGAGGTAGAAAA
66 GAGATGAAACCACGAATCAAAATGAAGCAACCAAGACTAAGTCGAGATAGAAAA
*** * * * ** * * * * *
8471011 TAAATGACTGGGATGAAACCATAAGT--TAGGAAGTGATCT-GACTAAGCCAAGATTAGGTGACT
1 TAAATGACCAAGATAAAACCACAAATCATATAAAATGATCTCGACTGAGCCAAGATCAAGTGATT
* * * * * * * * *
8471073 GAGATAAAATCATGAGTCAAAATGAAGCAACCAAGATTGAGTCAAGGTCA-AAGA
66 GAGATGAAACCACGAATCAAAATGAAGCAACCAAGACTAAGTCGAGAT-AGAAAA
* * * * ** * * *
8471127 TAAACGATCAAGATGAAATCATGAGTCATAAAAAATGATCTAGACTGAGCCAAGATCAA
1 TAAATGACCAAGATAAAACCACAAATCATATAAAATGATCTCGACTGAGCCAAGATCAA
8471186 AATGAGTGAT
Statistics
Matches: 234, Mismatches: 54, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
116 82 0.35
117 10 0.04
118 94 0.40
119 48 0.21
ACGTcount: A:0.44, C:0.15, G:0.21, T:0.20
Consensus pattern (119 bp):
TAAATGACCAAGATAAAACCACAAATCATATAAAATGATCTCGACTGAGCCAAGATCAAGTGATT
GAGATGAAACCACGAATCAAAATGAAGCAACCAAGACTAAGTCGAGATAGAAAA
Found at i:8471143 original size:116 final size:116
Alignment explanation
Indices: 8470934--8471185 Score: 256
Period size: 116 Copynumber: 2.1 Consensus size: 116
8470924 AAATGATTTC
* * * * *
8470934 GACTGAGCCAAGATCAAGTGATTGAGATGAAACCATGAATTAAAATGAAGCGACCAAGACTGAGT
1 GACTAAGCCAAGATCAAGTGACTGAGATAAAACCATGAATCAAAATGAAGCAACCAAGACTGAGT
* * **
8470999 CGAGGTAGAAAATAAATGACTGGGATGAAACCATAAGTTAGGAAGTGATCT
66 CAAGGTAGAAAATAAACGACTAAGATGAAACCATAAGTTAGGAAGTGATCT
* * * * *
8471050 GACTAAGCCAAGATTAGGTGACTGAGATAAAATCATGAGTCAAAATGAAGCAACCAAGATTGAGT
1 GACTAAGCCAAGATCAAGTGACTGAGATAAAACCATGAATCAAAATGAAGCAACCAAGACTGAGT
* * * ** *
8471115 CAAGGTCA-AAGATAAACGA-TCAAGATGAAATCATGAGTCATAAAAAATGATCT
66 CAAGGT-AGAAAATAAACGACT-AAGATGAAACCATAAGT--TAGGAAGTGATCT
*
8471168 AGACTGAGCCAAGATCAA
1 -GACTAAGCCAAGATCAA
8471186 AATGAGTGAT
Statistics
Matches: 108, Mismatches: 23, Indels: 7
0.78 0.17 0.05
Matches are distributed among these distances:
115 1 0.01
116 82 0.76
117 1 0.01
118 10 0.09
119 14 0.13
ACGTcount: A:0.44, C:0.14, G:0.23, T:0.19
Consensus pattern (116 bp):
GACTAAGCCAAGATCAAGTGACTGAGATAAAACCATGAATCAAAATGAAGCAACCAAGACTGAGT
CAAGGTAGAAAATAAACGACTAAGATGAAACCATAAGTTAGGAAGTGATCT
Found at i:8472294 original size:11 final size:11
Alignment explanation
Indices: 8472278--8472311 Score: 50
Period size: 11 Copynumber: 3.1 Consensus size: 11
8472268 TCCCCATCAA
8472278 TTTTCTTTTTT
1 TTTTCTTTTTT
*
8472289 TTTTCTTTGTT
1 TTTTCTTTTTT
*
8472300 TTTTATTTTTT
1 TTTTCTTTTTT
8472311 T
1 T
8472312 GCACATATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.03, C:0.06, G:0.03, T:0.88
Consensus pattern (11 bp):
TTTTCTTTTTT
Found at i:8475857 original size:25 final size:25
Alignment explanation
Indices: 8475798--8475861 Score: 69
Period size: 25 Copynumber: 2.6 Consensus size: 25
8475788 ATAAAGATTG
8475798 AATTATTAAATAAAATAAATAAAAAC
1 AATT-TTAAATAAAATAAATAAAAAC
* * *
8475824 CA-GTAAAATAAAATAGAATAAAAA-
1 AATTTTAAATAAAATA-AATAAAAAC
8475848 AATTTTAAATAAAA
1 AATTTTAAATAAAA
8475862 CAAAATTTAA
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
24 12 0.40
25 17 0.57
26 1 0.03
ACGTcount: A:0.69, C:0.03, G:0.03, T:0.25
Consensus pattern (25 bp):
AATTTTAAATAAAATAAATAAAAAC
Found at i:8475858 original size:15 final size:16
Alignment explanation
Indices: 8475840--8475872 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
8475830 AATAAAATAG
*
8475840 AATAAAA-AAATTTTA
1 AATAAAACAAAATTTA
8475855 AATAAAACAAAATTTA
1 AATAAAACAAAATTTA
8475871 AA
1 AA
8475873 ATATGAAAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 7 0.44
16 9 0.56
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (16 bp):
AATAAAACAAAATTTA
Found at i:8475910 original size:29 final size:28
Alignment explanation
Indices: 8475853--8475911 Score: 75
Period size: 31 Copynumber: 2.0 Consensus size: 28
8475843 AAAAAAATTT
*
8475853 TAAATAAAACAAAATTTAAAATATGAAAA
1 TAAATAAAACAAAATATAAAATA-GAAAA
8475882 TAAATAAAAATCAAAATATAAAATA-AAAA
1 TAAAT-AAAA-CAAAATATAAAATAGAAAA
8475911 T
1 T
8475912 GGAAAAAGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
29 10 0.37
30 4 0.15
31 13 0.48
ACGTcount: A:0.71, C:0.03, G:0.02, T:0.24
Consensus pattern (28 bp):
TAAATAAAACAAAATATAAAATAGAAAA
Found at i:8476398 original size:20 final size:20
Alignment explanation
Indices: 8476369--8476410 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
8476359 GAAAACTTCT
*
8476369 TAGAAGCCTAAA-CTTAATCC
1 TAGAAACCTAAATC-TAATCC
8476389 TAGAAACCTAAATCTAATCC
1 TAGAAACCTAAATCTAATCC
8476409 TA
1 TA
8476411 AAATTTTTCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
20 19 0.95
21 1 0.05
ACGTcount: A:0.43, C:0.24, G:0.07, T:0.26
Consensus pattern (20 bp):
TAGAAACCTAAATCTAATCC
Found at i:8476845 original size:3 final size:3
Alignment explanation
Indices: 8476831--8476888 Score: 82
Period size: 3 Copynumber: 19.7 Consensus size: 3
8476821 AAGCTATGCT
* *
8476831 ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT- ACA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
*
8476878 ATA ACA ATA AT
1 ATA ATA ATA AT
8476889 TATGATAACA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
2 1 0.02
3 47 0.98
ACGTcount: A:0.66, C:0.05, G:0.00, T:0.29
Consensus pattern (3 bp):
ATA
Found at i:8476952 original size:24 final size:24
Alignment explanation
Indices: 8476925--8476978 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
8476915 ACTATAGTAT
8476925 AAATCATACTAATAATAATAAAGA
1 AAATCATACTAATAATAATAAAGA
* * * *
8476949 AAATAATAGTAATAATAATGATGA
1 AAATCATACTAATAATAATAAAGA
8476973 AAATCA
1 AAATCA
8476979 ACCCCGGACA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.61, C:0.06, G:0.07, T:0.26
Consensus pattern (24 bp):
AAATCATACTAATAATAATAAAGA
Found at i:8477646 original size:19 final size:18
Alignment explanation
Indices: 8477619--8477722 Score: 68
Period size: 19 Copynumber: 5.5 Consensus size: 18
8477609 ATTCGTAGGT
*
8477619 TTTTCTTTTTCTATTTTAA
1 TTTTATTTTT-TATTTTAA
*
8477638 TTTTATTTTTTGATTTTGA
1 TTTTATTTTTT-ATTTTAA
*
8477657 TTTTGTTTATTTATTTTCATA
1 TTTTATTT-TTTATTTT-A-A
*
8477678 TTTTAAGTTTTTT-TTTTAT
1 TTTT-A-TTTTTTATTTTAA
* * *
8477697 TTTTGTTTTTT-TATTCA
1 TTTTATTTTTTATTTTAA
8477714 TTTTATTTT
1 TTTTATTTT
8477723 ACTATTTTTT
Statistics
Matches: 68, Mismatches: 11, Indels: 14
0.73 0.12 0.15
Matches are distributed among these distances:
17 17 0.25
18 1 0.01
19 31 0.46
20 4 0.06
21 9 0.13
22 3 0.04
23 3 0.04
ACGTcount: A:0.15, C:0.04, G:0.05, T:0.76
Consensus pattern (18 bp):
TTTTATTTTTTATTTTAA
Found at i:8477697 original size:18 final size:19
Alignment explanation
Indices: 8477676--8477718 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 19
8477666 TTTATTTTCA
8477676 TATTTTAAGTTTTTTT-TT
1 TATTTTAAGTTTTTTTATT
*
8477694 TATTTT-TGTTTTTTTATT
1 TATTTTAAGTTTTTTTATT
*
8477712 CATTTTA
1 TATTTTA
8477719 TTTTACTATT
Statistics
Matches: 21, Mismatches: 2, Indels: 3
0.81 0.08 0.12
Matches are distributed among these distances:
17 8 0.38
18 13 0.62
ACGTcount: A:0.16, C:0.02, G:0.05, T:0.77
Consensus pattern (19 bp):
TATTTTAAGTTTTTTTATT
Found at i:8477717 original size:17 final size:17
Alignment explanation
Indices: 8477670--8477717 Score: 51
Period size: 17 Copynumber: 2.6 Consensus size: 17
8477660 TGTTTATTTA
8477670 TTTTCATATTTTAAGTTTTT
1 TTTTCAT-TTTT--GTTTTT
*
8477690 TTTTTATTTTTGTTTTT
1 TTTTCATTTTTGTTTTT
8477707 TTATTCATTTT
1 TT-TTCATTTT
8477718 ATTTTACTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
17 8 0.32
18 7 0.28
19 4 0.16
20 6 0.24
ACGTcount: A:0.15, C:0.04, G:0.04, T:0.77
Consensus pattern (17 bp):
TTTTCATTTTTGTTTTT
Found at i:8477717 original size:24 final size:25
Alignment explanation
Indices: 8477690--8477740 Score: 61
Period size: 23 Copynumber: 2.1 Consensus size: 25
8477680 TTAAGTTTTT
**
8477690 TTTTTATTTTTGT-TTTTTTATTCA
1 TTTTTATTTTACTATTTTTTATTCA
*
8477714 -TTTTATTTTACTATTTTTTATTTA
1 TTTTTATTTTACTATTTTTTATTCA
8477738 TTT
1 TTT
8477741 AGTAACTCTA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
23 10 0.45
24 10 0.45
25 2 0.09
ACGTcount: A:0.16, C:0.04, G:0.02, T:0.78
Consensus pattern (25 bp):
TTTTTATTTTACTATTTTTTATTCA
Found at i:8479159 original size:3 final size:3
Alignment explanation
Indices: 8479141--8479306 Score: 130
Period size: 3 Copynumber: 60.3 Consensus size: 3
8479131 TAGTATAGCA
*
8479141 TAT TA- TAT TA- TAT TAT TAT T-T TAT TAC TAT TA- TAT TA- TAT TA-
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * * *
8479183 TAT TAT TA- TAG TA- TAT GA- TAT TA- TAT TAA TAT TA- CAG TA- TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * *
8479225 TAT AAT ATAT TA- TAG TA- TAT TA- TAG TA- TAT TAT TAT TAT TAT
1 TAT TAT -TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
8479267 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
8479307 GGGTTTTTAT
Statistics
Matches: 136, Mismatches: 10, Indels: 34
0.76 0.06 0.19
Matches are distributed among these distances:
2 30 0.22
3 104 0.76
4 2 0.01
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.58
Consensus pattern (3 bp):
TAT
Found at i:8479236 original size:20 final size:20
Alignment explanation
Indices: 8479200--8479256 Score: 78
Period size: 20 Copynumber: 2.8 Consensus size: 20
8479190 ATAGTATATG
*
8479200 ATATTATATTAATATTACAGT
1 ATATTATAAT-ATATTACAGT
*
8479221 ATATTATAATATATTATAGT
1 ATATTATAATATATTACAGT
*
8479241 ATATTATAGTATATTA
1 ATATTATAATATATTA
8479257 TTATTATTAT
Statistics
Matches: 33, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 24 0.73
21 9 0.27
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (20 bp):
ATATTATAATATATTACAGT
Found at i:8479270 original size:15 final size:15
Alignment explanation
Indices: 8479141--8479306 Score: 130
Period size: 13 Copynumber: 12.1 Consensus size: 15
8479131 TAGTATAGCA
8479141 TATTA-TATTA-TAT
1 TATTATTATTATTAT
*
8479154 TATTATT-TTATTAC
1 TATTATTATTATTAT
8479168 TATTA-TATTA-TAT
1 TATTATTATTATTAT
*
8479181 TA-TATTATTA-TAG
1 TATTATTATTATTAT
*
8479194 TA-TATGA-TATTA-
1 TATTATTATTATTAT
* * *
8479206 TATTAATATTA-CAG
1 TATTATTATTATTAT
*
8479220 TA-TATTATAATATAT
1 TATTATTATTAT-TAT
*
8479235 TA-TAGTA-TATTA-
1 TATTATTATTATTAT
*
8479247 TAGTA-TATTATTAT
1 TATTATTATTATTAT
8479261 TATTATTATTATTAT
1 TATTATTATTATTAT
8479276 TATTATTATTATTAT
1 TATTATTATTATTAT
8479291 TATTATTATTATTAT
1 TATTATTATTATTAT
8479306 T
1 T
8479307 GGGTTTTTAT
Statistics
Matches: 125, Mismatches: 14, Indels: 26
0.76 0.08 0.16
Matches are distributed among these distances:
12 10 0.08
13 47 0.38
14 21 0.17
15 47 0.38
ACGTcount: A:0.37, C:0.01, G:0.03, T:0.58
Consensus pattern (15 bp):
TATTATTATTATTAT
Found at i:8480156 original size:13 final size:13
Alignment explanation
Indices: 8480140--8480200 Score: 65
Period size: 13 Copynumber: 4.8 Consensus size: 13
8480130 TTTTTTTTTA
8480140 TTTTAATTTTAAT
1 TTTTAATTTTAAT
8480153 TTTTAA-TTT-AT
1 TTTTAATTTTAAT
*
8480164 TTTCATATTTTAAGT
1 TTTTA-ATTTTAA-T
*
8480179 TTTT-ATTTTTAT
1 TTTTAATTTTAAT
8480191 TTTTAATTTT
1 TTTTAATTTT
8480201 TTATTCATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
11 6 0.15
12 9 0.22
13 20 0.50
14 1 0.03
15 4 0.10
ACGTcount: A:0.25, C:0.02, G:0.02, T:0.72
Consensus pattern (13 bp):
TTTTAATTTTAAT
Found at i:8480193 original size:5 final size:6
Alignment explanation
Indices: 8480130--8480201 Score: 58
Period size: 6 Copynumber: 11.7 Consensus size: 6
8480120 GATTCGCAGG
* * * *
8480130 TTTT-T TTTTAT TTTAAT TTTAAT TTTTA- ATTTAT TTTCATAT TTTAAGT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTT--TAT TTTTA-T
8480179 TTTTAT TTTTAT TTTTAAT TTTT
1 TTTTAT TTTTAT TTTT-AT TTTT
8480202 TATTCATTTT
Statistics
Matches: 55, Mismatches: 6, Indels: 10
0.77 0.08 0.14
Matches are distributed among these distances:
5 8 0.15
6 30 0.55
7 11 0.20
8 6 0.11
ACGTcount: A:0.22, C:0.01, G:0.01, T:0.75
Consensus pattern (6 bp):
TTTTAT
Found at i:8480196 original size:20 final size:21
Alignment explanation
Indices: 8480159--8480205 Score: 69
Period size: 20 Copynumber: 2.3 Consensus size: 21
8480149 TAATTTTTAA
8480159 TTTATTTTCATATTTTAAGTT
1 TTTATTTTCATATTTTAAGTT
* *
8480180 TTTATTTTTAT-TTTTAATTT
1 TTTATTTTCATATTTTAAGTT
8480200 TTTATT
1 TTTATT
8480206 CATTTTGTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
20 14 0.58
21 10 0.42
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.74
Consensus pattern (21 bp):
TTTATTTTCATATTTTAAGTT
Found at i:8480201 original size:13 final size:13
Alignment explanation
Indices: 8480134--8480201 Score: 63
Period size: 13 Copynumber: 5.4 Consensus size: 13
8480124 CGCAGGTTTT
8480134 TTTTTA-TTTTAA
1 TTTTTATTTTTAA
*
8480146 TTTTAATTTTTAA
1 TTTTTATTTTTAA
*
8480159 --TTTATTTTCATA
1 TTTTTATTTTTA-A
*
8480171 TTTTAAGTTTTT-A
1 TTTTTA-TTTTTAA
8480184 TTTTTATTTTTAA
1 TTTTTATTTTTAA
8480197 TTTTT
1 TTTTT
8480202 TATTCATTTT
Statistics
Matches: 44, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
11 8 0.18
12 11 0.25
13 18 0.41
14 3 0.07
15 4 0.09
ACGTcount: A:0.24, C:0.01, G:0.01, T:0.74
Consensus pattern (13 bp):
TTTTTATTTTTAA
Found at i:8481992 original size:36 final size:35
Alignment explanation
Indices: 8481938--8482052 Score: 135
Period size: 36 Copynumber: 3.2 Consensus size: 35
8481928 TTTATTTTTT
* * *
8481938 AAAAATAGAAGAATAAGTAATAAAAGTGTTTTCCTA
1 AAAAATAGTAGAACAAGTAATAAAA-TATTTTCCTA
*
8481974 AAAAATAGTATAACAAGTAATTAAAATATTTTCCT-
1 AAAAATAGTAGAACAAGTAA-TAAAATATTTTCCTA
*
8482009 AAAAATAGGT-GAACAAGTAATAAGAATATTTTTCTA
1 AAAAATA-GTAGAACAAGTAATAA-AATATTTTCCTA
8482045 AAAAATAG
1 AAAAATAG
8482053 AAAAATTATT
Statistics
Matches: 69, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
34 3 0.04
35 27 0.39
36 34 0.49
37 5 0.07
ACGTcount: A:0.53, C:0.06, G:0.11, T:0.30
Consensus pattern (35 bp):
AAAAATAGTAGAACAAGTAATAAAATATTTTCCTA
Found at i:8482024 original size:35 final size:34
Alignment explanation
Indices: 8481937--8482048 Score: 118
Period size: 35 Copynumber: 3.2 Consensus size: 34
8481927 ATTTATTTTT
** * *
8481937 TAAAAATAGAAGAATAAGTAATAAAAGTGTTTTCC
1 TAAAAATAGGTGAACAAGTAATAAAA-TATTTTCC
*
8481972 TAAAAAATA-GTATAACAAGTAATTAAAATATTTTCC
1 T-AAAAATAGGT-GAACAAGTAA-TAAAATATTTTCC
*
8482008 TAAAAATAGGTGAACAAGTAATAAGAATATTTTTC
1 TAAAAATAGGTGAACAAGTAATAA-AATATTTTCC
8482043 TAAAAA
1 TAAAAA
8482049 ATAGAAAAAT
Statistics
Matches: 65, Mismatches: 7, Indels: 10
0.79 0.09 0.12
Matches are distributed among these distances:
34 3 0.05
35 32 0.49
36 25 0.38
37 5 0.08
ACGTcount: A:0.53, C:0.06, G:0.11, T:0.30
Consensus pattern (34 bp):
TAAAAATAGGTGAACAAGTAATAAAATATTTTCC
Found at i:8482926 original size:23 final size:23
Alignment explanation
Indices: 8482900--8482943 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
8482890 ATTTTATTAA
8482900 AAATATTT-TTGAATAAAGAAAAT
1 AAATATTTGTT-AATAAAGAAAAT
*
8482923 AAATATTTGTTATTAAAGAAA
1 AAATATTTGTTAATAAAGAAA
8482944 TTGATTCTCT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
23 17 0.89
24 2 0.11
ACGTcount: A:0.55, C:0.00, G:0.09, T:0.36
Consensus pattern (23 bp):
AAATATTTGTTAATAAAGAAAAT
Found at i:8483567 original size:26 final size:26
Alignment explanation
Indices: 8483518--8483570 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
8483508 ATGAGTATGT
*
8483518 TTTATATGATGTATCAATTATGTGTA
1 TTTATATGATGTATCAATCATGTGTA
* *
8483544 TTTATATGATGTATTAATCGTGTGTA
1 TTTATATGATGTATCAATCATGTGTA
8483570 T
1 T
8483571 GAATAATGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.04, G:0.17, T:0.51
Consensus pattern (26 bp):
TTTATATGATGTATCAATCATGTGTA
Found at i:8485634 original size:21 final size:21
Alignment explanation
Indices: 8485610--8485652 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
8485600 TAAGGATGTA
8485610 TATTTTATCTTCATATATTAC
1 TATTTTATCTTCATATATTAC
*
8485631 TATTTTATCTTCATATTTTAC
1 TATTTTATCTTCATATATTAC
8485652 T
1 T
8485653 TTTGTAAGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.26, C:0.14, G:0.00, T:0.60
Consensus pattern (21 bp):
TATTTTATCTTCATATATTAC
Found at i:8485958 original size:15 final size:15
Alignment explanation
Indices: 8485935--8485969 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8485925 TTAAGAATGC
*
8485935 TCAACCTTAAATTGT
1 TCAAACTTAAATTGT
*
8485950 TCAAACTTAACTTGT
1 TCAAACTTAAATTGT
8485965 TCAAA
1 TCAAA
8485970 TTGTTGTTGC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.37, C:0.20, G:0.06, T:0.37
Consensus pattern (15 bp):
TCAAACTTAAATTGT
Found at i:8488656 original size:380 final size:379
Alignment explanation
Indices: 8487949--8488706 Score: 1365
Period size: 380 Copynumber: 2.0 Consensus size: 379
8487939 ATTTCTTTGC
8487949 ATGATTCAAAGCATCTACTTCCATGGTAGGCCAGTAATACCCAATATCTAATAGTTTTTTATAGA
1 ATGATTCAAAGCATCTACTTCCATGGTAGGCCAGTAATACCCAATATCTAATAGTTTTTTATAGA
*
8488014 GCTTCCTACCTCCTTCATGTTCTCCACTACTCCCATAACGTATTTTTTCTAACAATAATTGTATG
66 GCTTCCTACCTCCTTCATGTTCTCCACTACTCCCACAACGTATTTTTTCTAACAATAATTGTATG
* * *
8488079 TCAACTGGAGAAACACATTTCAAAGACTTTCCTGTGAATGAAATTCAAAATAAATCAATCCCATT
131 TCAACTAGAAAAAAACATTTCAAAGACTTTCCTGTGAATGAAATTCAAAATAAATCAATCCCATT
8488144 CATAAAAAAATCTTTGAACTATTCTTTTAAACAGTCTTGCATTATGATAATTGGTTGAAAGAACT
196 CATAAAAAAATCTTTGAACTATTCTTTTAAACAGTCTTGCATTATGATAATTGGTTGAAAGAACT
* * * *
8488209 TTATTTTTAAGATAGTCAATATAGGGCCTATGCTAATCACCAACATTCCTAAAAAAATTGTATTA
261 TTATTTTTAAGATAATCAATATAGGGCCTACGCCAATCACCAACATTCCTAAAAAAATTGCATTA
8488274 TTTGACATTAAGAGGTTTAGAACACTCACTACAAGATTTTTGAAGTTGTAGTGT
326 TTTGACATTAAGAGGTTTAGAACACTCACTACAAGATTTTTGAAGTTGTAGTGT
8488328 ATGATTCAAAGCATCTACTTCCATGGTAGGCCAGTAATACCCAATATCTAATAGTTTTTTTATAG
1 ATGATTCAAAGCATCTACTTCCATGGTAGGCCAGTAATACCCAATATCTAATAG-TTTTTTATAG
*
8488393 AGCTTCCTACCTCTTTCATGTTCTCCACTACTCCCACAACGTATTTTTTCTAACAATAATTGTAT
65 AGCTTCCTACCTCCTTCATGTTCTCCACTACTCCCACAACGTATTTTTTCTAACAATAATTGTAT
* *
8488458 GTCAACTAGAAAAAAATATTTCAAAGACTTTCCTGTGAATGAAATTCAAAATAAATCATTCCCAT
130 GTCAACTAGAAAAAAACATTTCAAAGACTTTCCTGTGAATGAAATTCAAAATAAATCAATCCCAT
*
8488523 TCATAAAAAAATCTTTGAACTATTCTTTTAAGCAGTCTTGCATTATGATAATTGGTTGAAAGAAC
195 TCATAAAAAAATCTTTGAACTATTCTTTTAAACAGTCTTGCATTATGATAATTGGTTGAAAGAAC
*
8488588 TCTT-TTTTTAAGATAATCAATATAGGGCCTACGCCAATCACCAACATTCCTCAAAAAATTGCAT
260 T-TTATTTTTAAGATAATCAATATAGGGCCTACGCCAATCACCAACATTCCTAAAAAAATTGCAT
*
8488652 TATTTGACATTAGGAGGTTTAGAACACTCACTACAAGATTTTTGAAGTTGTAGTG
324 TATTTGACATTAAGAGGTTTAGAACACTCACTACAAGATTTTTGAAGTTGTAGTG
8488707 CATCTTTAGA
Statistics
Matches: 363, Mismatches: 14, Indels: 3
0.96 0.04 0.01
Matches are distributed among these distances:
379 54 0.15
380 307 0.85
381 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.12, T:0.35
Consensus pattern (379 bp):
ATGATTCAAAGCATCTACTTCCATGGTAGGCCAGTAATACCCAATATCTAATAGTTTTTTATAGA
GCTTCCTACCTCCTTCATGTTCTCCACTACTCCCACAACGTATTTTTTCTAACAATAATTGTATG
TCAACTAGAAAAAAACATTTCAAAGACTTTCCTGTGAATGAAATTCAAAATAAATCAATCCCATT
CATAAAAAAATCTTTGAACTATTCTTTTAAACAGTCTTGCATTATGATAATTGGTTGAAAGAACT
TTATTTTTAAGATAATCAATATAGGGCCTACGCCAATCACCAACATTCCTAAAAAAATTGCATTA
TTTGACATTAAGAGGTTTAGAACACTCACTACAAGATTTTTGAAGTTGTAGTGT
Found at i:8492202 original size:161 final size:154
Alignment explanation
Indices: 8491983--8492298 Score: 524
Period size: 161 Copynumber: 2.0 Consensus size: 154
8491973 TTTTTTAAAA
*
8491983 TATTTACTACTATAATTAAATAAAAAATAGTTAATATTTTTAAATTCATAAAAATGAATTTAAAT
1 TATTTACTACTATAATTAAATAAAAAATAGTAAATATTTTTAAATTCATAAAAATGAATTTAAAT
* *
8492048 TCATAAACTGAATATTATAAATATTTAAATATCTAAATACATAATTTGTTCTAGTATACATGTAA
66 TCATAAACTGAATATTATAAATATTTAAATATCTAAATACATAATGTATTCTAGTATACA--T--
8492113 CACAAAGTTTAATATATTAACATTCAAAT
127 CACAAAGTTTAATATA-TAACATTCAAAT
8492142 TATTTACTACTATAATTAAATAAAAAAATAGATAAATATTTTTAAATTCATAAAAATGAATTTAA
1 TATTTACTACTATAATTAAAT-AAAAAATAG-TAAATATTTTTAAATTCATAAAAATGAATTTAA
* *
8492207 ATTCATAAACTGTATATTATAAATATTTAAATATCTAAATGCATAATGTATTCTAGTATACATCA
64 ATTCATAAACTGAATATTATAAATATTTAAATATCTAAATACATAATGTATTCTAGTATACATCA
8492272 CAAAGTTTAATATATAACATTCAAAT
129 CAAAGTTTAATATATAACATTCAAAT
8492298 T
1 T
8492299 GTTTCAGTAT
Statistics
Matches: 150, Mismatches: 5, Indels: 7
0.93 0.03 0.04
Matches are distributed among these distances:
156 13 0.09
157 16 0.11
159 22 0.15
160 9 0.06
161 90 0.60
ACGTcount: A:0.48, C:0.08, G:0.04, T:0.39
Consensus pattern (154 bp):
TATTTACTACTATAATTAAATAAAAAATAGTAAATATTTTTAAATTCATAAAAATGAATTTAAAT
TCATAAACTGAATATTATAAATATTTAAATATCTAAATACATAATGTATTCTAGTATACATCACA
AAGTTTAATATATAACATTCAAAT
Found at i:8493911 original size:162 final size:160
Alignment explanation
Indices: 8493255--8493927 Score: 604
Period size: 161 Copynumber: 4.2 Consensus size: 160
8493245 CAATAATTGT
* * * * * * * *
8493255 AAATTTTTATTTTTACCTTTTAAC-A-TTATAAAAAGTCCTAAACAGATATAAATC-ATAACTTA
1 AAATTTATATTTTTGCCTTTTAACGACGTA-ATAAAGTCCTAAAAAGACATAAA-CGGTAACTTT
* ** *
8493317 TTCATACATATCAATTTGTGAAAACCAAGTTCAATCATTCGGATAAGTTTAATATCATGTATTTA
64 TTCACACATATCAA-TCATGAAAACCAAGTTCAATCATTC-GATAAGTTTAATATCATGTATTGA
* * *
8493382 AGCTACCTAAACTGTTAAAACATA-AAT-A-TAACA
127 AGCTATCTAAATTGTT-AAA-ATAGAATAACAAACA
* ** *
8493415 ATAATATTACATTTTTGCC-TTT-A-GTGGTACAATAAAGTCCTAAAAAGACATAAACAGT-ACT
1 A-AAT-TTATATTTTTGCCTTTTAACGACGT--AATAAAGTCCTAAAAAGACATAAACGGTAAC-
* * *
8493476 TTTTTCACACATATCAATCATGAAAACTAAGTTCAATCATTTAGATAAGTTTAATATTATGTATT
61 TTTTTCACACATATCAATCATGAAAACCAAGTTCAATCA-TTCGATAAGTTTAATATCATGTATT
*
8493541 GAAGCTATCTAAATTATTAAAATAGAATAACAAACA
125 GAAGCTATCTAAATTGTTAAAATAGAATAACAAACA
** * ** * * * *
8493577 CAAATTTCCATTTTGGTTTTTTAACGGCATAA-AAAGTGCTAAACAGACATAAACGGTAACTTTT
1 -AAATTTATATTTTTGCCTTTTAACGACGTAATAAAGTCCTAAAAAGACATAAACGGTAACTTTT
* * ** * * * *
8493641 TTATATGTATCAATCAT-AAAAGCCAAGTTTAATCATTCGAAAAAGTTTAATATCTTGTATTTAA
65 TCACACATATCAATCATGAAAA-CCAAGTTCAATCATTCG-ATAAGTTTAATATCATGTATTGAA
* * **
8493705 GCTATTTAAATTGTTAAAACCTAAATATAAC-TGCA
128 GCTATCTAAATTGTTAAAA--TAGA-ATAACAAACA
*
8493740 AAA-TTATATTTTTGCCTTTTAACGACGTAATAAAGTCCTAAAAAGACATAAATGGTAACTTTTT
1 AAATTTATATTTTTGCCTTTTAACGACGTAATAAAGTCCTAAAAAGACATAAACGGTAACTTTTT
* * *
8493804 CACACATATC-AGCAGTGAAAACCAAGTTCAATCATTCAGGTAAGTTTAATATCATATATTGAAG
66 CACACATATCAATCA-TGAAAACCAAGTTCAATCATTC-GATAAGTTTAATATCATGTATTGAAG
8493868 CTATCTAAATTGTTAAAATAGAATAACAAACA
129 CTATCTAAATTGTTAAAATAGAATAACAAACA
8493900 TAAATTTATA-TTTTGACCTTTTAACGAC
1 -AAATTTATATTTTTG-CCTTTTAACGAC
8493928 ACATAAAAGT
Statistics
Matches: 411, Mismatches: 72, Indels: 58
0.76 0.13 0.11
Matches are distributed among these distances:
159 8 0.02
160 20 0.05
161 192 0.47
162 171 0.42
163 13 0.03
164 7 0.02
ACGTcount: A:0.41, C:0.14, G:0.10, T:0.35
Consensus pattern (160 bp):
AAATTTATATTTTTGCCTTTTAACGACGTAATAAAGTCCTAAAAAGACATAAACGGTAACTTTTT
CACACATATCAATCATGAAAACCAAGTTCAATCATTCGATAAGTTTAATATCATGTATTGAAGCT
ATCTAAATTGTTAAAATAGAATAACAAACA
Found at i:8493924 original size:323 final size:322
Alignment explanation
Indices: 8493220--8493950 Score: 846
Period size: 323 Copynumber: 2.3 Consensus size: 322
8493210 ATGTAATAAG
* * * * *** * * *
8493220 AGCTATCTAAACTATTAAAATAAAACAATAATTGTAAATTTTTATTTTTACCTTTTAAC-ATTAT
1 AGCTATCTAAATTATTAAAATAGAATAACAAACATAAATTTATATTTTGACCTTTTAACGA-CAT
* * **
8493284 AAAAAGTCCTAAACAGATATAAATCATAACTTATTCATACATATCAATTTGTGAAAACCAAGTTC
65 AAAAAGTACTAAACAGACATAAATCATAACTTATTCATACATATCAATTCATGAAAACCAAGTTC
* *
8493349 AATCATTCGGATAAGTTTAATATCATGTATTTAAGCTACCTAAACTGTTAAAACATAAATATAAC
130 AATCATTCGAAAAAGTTTAATATCATGTATTTAAGCTACCTAAACTGTTAAAACATAAATATAAC
* * **
8493414 AATAATATTACATTTTTGCCTTTAGTGGTACAATAAAGTCCTAAAAAGACATAAACAGTACTTTT
195 AACAAAATTACATTTTTGCCTTTAGACGTA-AATAAAGTCCTAAAAAGACATAAACAGTACTTTT
* * * * *
8493479 TTCACACATATCAATCATGAAAACTAAGTTCAATCATTTAGATAAGTTTAATATTATGTATTGA
259 TTCACACATATCAAGCATGAAAACCAAGTTCAATCATTCAGATAAGTTTAATATCATATATTGA
* ** *** *
8493543 AGCTATCTAAATTATTAAAATAGAATAACAAACACAAATTTCCATTTTGGTTTTTTAACGGCATA
1 AGCTATCTAAATTATTAAAATAGAATAACAAACATAAATTTATATTTTGACCTTTTAACGACATA
* * * * **
8493608 AAAAGTGCTAAACAGACATAAA-CGGTAACTTTTTTATATGTATCAA-TCAT-AAAAGCCAAGTT
66 AAAAGTACTAAACAGACATAAATC-ATAACTTATTCATACATATCAATTCATGAAAA-CCAAGTT
* * ** * *
8493670 TAATCATTCGAAAAAGTTTAATATCTTGTATTTAAGCTATTTAAATTGTTAAAACCTAAATATAA
129 CAATCATTCGAAAAAGTTTAATATCATGTATTTAAGCTACCTAAACTGTTAAAACATAAATATAA
** * **
8493735 CTGCAAAATTATATTTTTGCCTTTTAACGACGT-AATAAAGTCCTAAAAAGACATAAATGGTAAC
194 CAACAAAATTACATTTTTGCC-TTT-A-GACGTAAATAAAGTCCTAAAAAGACATAAACAGT-AC
*
8493799 -TTTTTCACACATATC-AGCAGTGAAAACCAAGTTCAATCATTCAGGTAAGTTTAATATCATATA
255 TTTTTTCACACATATCAAGCA-TGAAAACCAAGTTCAATCATTCAGATAAGTTTAATATCATATA
8493862 TTGA
319 TTGA
* *
8493866 AGCTATCTAAATTGTTAAAATAGAATAACAAACATAAATTTATATTTTGACCTTTTAACGACACA
1 AGCTATCTAAATTATTAAAATAGAATAACAAACATAAATTTATATTTTGACCTTTTAACGACATA
*
8493931 TAAAAGTACTAAACAAACAT
66 -AAAAGTACTAAACAGACAT
8493951 GAAAACTAAG
Statistics
Matches: 340, Mismatches: 59, Indels: 17
0.82 0.14 0.04
Matches are distributed among these distances:
321 4 0.01
322 86 0.25
323 227 0.67
324 20 0.06
325 3 0.01
ACGTcount: A:0.43, C:0.14, G:0.09, T:0.34
Consensus pattern (322 bp):
AGCTATCTAAATTATTAAAATAGAATAACAAACATAAATTTATATTTTGACCTTTTAACGACATA
AAAAGTACTAAACAGACATAAATCATAACTTATTCATACATATCAATTCATGAAAACCAAGTTCA
ATCATTCGAAAAAGTTTAATATCATGTATTTAAGCTACCTAAACTGTTAAAACATAAATATAACA
ACAAAATTACATTTTTGCCTTTAGACGTAAATAAAGTCCTAAAAAGACATAAACAGTACTTTTTT
CACACATATCAAGCATGAAAACCAAGTTCAATCATTCAGATAAGTTTAATATCATATATTGA
Found at i:8495394 original size:13 final size:13
Alignment explanation
Indices: 8495373--8495405 Score: 57
Period size: 13 Copynumber: 2.5 Consensus size: 13
8495363 ACAACCAACT
8495373 ATATATAAAGAAC
1 ATATATAAAGAAC
*
8495386 ATATTTAAAGAAC
1 ATATATAAAGAAC
8495399 ATATATA
1 ATATATA
8495406 GACATTGAGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.58, C:0.06, G:0.06, T:0.30
Consensus pattern (13 bp):
ATATATAAAGAAC
Found at i:8499689 original size:14 final size:15
Alignment explanation
Indices: 8499670--8499698 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8499660 CAAACAAAAG
8499670 CAAAAAA-CATTTGA
1 CAAAAAAGCATTTGA
8499684 CAAAAAAGCATTTGA
1 CAAAAAAGCATTTGA
8499699 TAAATAACTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 7 0.50
15 7 0.50
ACGTcount: A:0.55, C:0.14, G:0.10, T:0.21
Consensus pattern (15 bp):
CAAAAAAGCATTTGA
Found at i:8505919 original size:40 final size:40
Alignment explanation
Indices: 8505857--8505934 Score: 113
Period size: 40 Copynumber: 1.9 Consensus size: 40
8505847 TAGTTATTTT
8505857 GTAAAATAACTTTTACTAAAATAATCTTATCACATGTTTA
1 GTAAAATAACTTTTACTAAAATAATCTTATCACATGTTTA
* * *
8505897 GTAAAATAA-TTTTCACTGAAATAGTCTTATTACATGTT
1 GTAAAATAACTTTT-ACTAAAATAATCTTATCACATGTT
8505935 ATTACTTATC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
39 4 0.12
40 30 0.88
ACGTcount: A:0.40, C:0.12, G:0.08, T:0.41
Consensus pattern (40 bp):
GTAAAATAACTTTTACTAAAATAATCTTATCACATGTTTA
Found at i:8510759 original size:11 final size:12
Alignment explanation
Indices: 8510728--8510776 Score: 50
Period size: 11 Copynumber: 4.2 Consensus size: 12
8510718 CATCATTTGA
*
8510728 AATAAGTTACATT
1 AATAAATTA-ATT
8510741 AA-AAATTAA-T
1 AATAAATTAATT
*
8510751 ATTAAATTAATT
1 AATAAATTAATT
8510763 AATAAATT-ATT
1 AATAAATTAATT
8510774 AAT
1 AAT
8510777 TTATGTACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
10 2 0.06
11 14 0.45
12 13 0.42
13 2 0.06
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.41
Consensus pattern (12 bp):
AATAAATTAATT
Found at i:8511095 original size:7 final size:7
Alignment explanation
Indices: 8511083--8511116 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
8511073 TATATTCAGT
8511083 AAATTTA
1 AAATTTA
8511090 AAATTTA
1 AAATTTA
8511097 AAATTTA
1 AAATTTA
*
8511104 ATATTTA
1 AAATTTA
*
8511111 TAATTT
1 AAATTT
8511117 TTTTCATTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (7 bp):
AAATTTA
Found at i:8512200 original size:3 final size:3
Alignment explanation
Indices: 8512187--8512230 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
8512177 TCTAAACTCA
*
8512187 ATT AGT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT AT
8512231 ATATCATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
ATT
Found at i:8514300 original size:850 final size:845
Alignment explanation
Indices: 8512614--8515161 Score: 4104
Period size: 850 Copynumber: 3.0 Consensus size: 845
8512604 AATAGTAAAT
*
8512614 TAAGAATATTTACTCTTACTTTTCAAACCATTTACACTTGAATTTTTTTCTTTCTTTCTTATGCC
1 TAAGAATATTTACTCTTACTTTTCCAACCATTTACACTTGAATTTTTTTCTTTCTTT-TTATGCC
* * * * *
8512679 AACAACCGCAAGTGCACGAATCT-TATACGTAATATAAATAGGAAGTATCAAGTATTGTCTTCAC
65 AACAAACGCAAGTGTACGGAT-TGTATAAGTAATATAAATAGGAAGTATCAAGTATCGTCTTCAC
* * *
8512743 AGAGATTGAATTAGGTTAGCCTAAAGCTAATTACCAAAATCTA-GCACTTAGATTATATTTGGTT
129 AG-GATTGAATTAAGTTAACCTAAAGCTAATTACCAAAATC-AGGCACTTAGATTATATTTGGCT
* * *
8512807 CTAACAAAAATTAGGGAAATTATTAAATTATCATAAATTAAGGATACAATTAATTCCAAGTAAAT
192 CTAACAAAAATTAGGGAAATTATTAAATTATCCTAAATTAAGCATACAATTAATACCAAGTAAAT
8512872 TAAAACCTAATGACTAACAAATTATGGAAGTTAACTAATTGAACCTAAACTTACCT-AATTAGGA
257 TAAAACCTAATGACTAACAAATTATGGAAGTTAACTAATTGAACCTAAACTTA-CTAAATTAGGA
* * *
8512936 AACTT-CCAAAAATAAAAGGTTGCTAGAAATGAAAGGTTTTTTAAAAAAGAAAGTTCTAC-ATAG
321 AACTTACC-AAAATGAAA-GTTGCTAGAAATGAAAGGTTTCTAAAAAAAGAAAGTTCTACAATAG
* *
8512999 AAAGGCAAAATTTTAAATCTAAACTTGTAACATAAATGAAAAA-AATATAATTTTATTAAAATAT
384 AAAGGCAAAATTTTAAATCTAAACTAGTAACATAAATGAAAAATAATATAATTTTATTAGAATAT
* * * *
8513063 AAAAAAATAAGATGTATACATTCAAAGGTTAAAAACTCATTTATAATAATTATGAGTTCACATGA
449 -AAAAAATAATATGTATACACTCAAAGGTTAAAAACTCATTTATAATAGTTATGAGTTCACATGG
* * * * *
8513128 TATGACGTATTTAGGTTTGTGCATCGTACCATACTAACCCATGTGTCATCTAATGACACTAACCT
513 TATGACATATTTAAGTTTGTGTATCGTACCATACTAACCCATGTGTCATATAATGACACTGACCT
* * * *
8513193 TTATCGGATTGT-ATCATACCAACTCATGAATTTAAAAGTTTTTAACCTAACATGGAACTCACAT
578 TTATCGGATTGTGCT-ATACCATCTCATGAACTTAAAAGTTTTTAACCTAACATGGAACTCATAT
8513257 GTATTAAGTTTGGTCTAATTTAATTGTTTAATATCAAATTGTATCAAACATGACTCATAATATAT
642 GTATTAAGTTTGGTCTAATTTAATTGTTTAATATCAAATTGTATCAAACATGACTCATAATATAT
* *
8513322 CAAACCATATCGTTTCTACTTTTCAATCCATTTGACACCTATTTATGAGATAGAAAAGTCTAACA
707 CAAATCATATCGTTTCTACTTTTCAATCCATTTGACACCTATATATGAGATAGAAAAGTCTAACA
* *
8513387 TTGAAAAATAAAGTTTGATAGCTCATTTTCTTTGTACTATTAGTTCGGTGGGCTGTGGCTAAAAC
772 TTGAAAAATAAAGTTTGATAGCTCATTTTCTTTGTACTATTAGCTCGGTGGGCTGTGGCTAAAAA
8513452 TTATTGACG
837 TTATTGACG
* *
8513461 TAAGAATATTTACTCTTACTTTTCCAACCATTTACACATGAACTTTTTGTCTTTCTTTTTGATGC
1 TAAGAATATTTACTCTTACTTTTCCAACCATTTACACTTGAA-TTTTTTTCTTTCTTTTT-ATGC
*
8513526 CAACAAACGCAAGTGTACGGATTGTATAAGTAATATAAATAGGAAGTATCAAGTATCGTCTCCAC
64 CAACAAACGCAAGTGTACGGATTGTATAAGTAATATAAATAGGAAGTATCAAGTATCGTCTTCAC
* *
8513591 AAGGATTAAATTAAGTTAACCTAAAGCTAATTACCAAAATCGGGCACTTAGATTATATTTGGCTC
129 -AGGATTGAATTAAGTTAACCTAAAGCTAATTACCAAAATCAGGCACTTAGATTATATTTGGCTC
*
8513656 TAACAAAAATTAGGGAAATTACTAAATTATCCTAAATTAAGCATACAATTAATACCAAGTAAATT
193 TAACAAAAATTAGGGAAATTATTAAATTATCCTAAATTAAGCATACAATTAATACCAAGTAAATT
* *
8513721 AAAACCTAATGACTAACAAATTGTGGAAGTTAACTAATTGAGCCTAAACTTACTAAATTAGGAAA
258 AAAACCTAATGACTAACAAATTATGGAAGTTAACTAATTGAACCTAAACTTACTAAATTAGGAAA
*
8513786 CTTACCGAAAATCGAAATTTGCTAGAAATGAAAGGTTTCTAAAAAAAGAAAGTTCTACAATAGAA
323 CTTACC-AAAAT-GAAAGTTGCTAGAAATGAAAGGTTTCTAAAAAAAGAAAGTTCTACAATAGAA
* *
8513851 AGGCAAAATTATAAATCTAAACTAGTAACATAAATGAAAAATAATATAAATTTATTAGAATATAA
386 AGGCAAAATTTTAAATCTAAACTAGTAACATAAATGAAAAATAATATAATTTTATTAGAATATAA
*
8513916 AAAATAATATGTATACACTCAAAGGTTAAAAACTCATTTATAATAGTTATGAGTTCACATGGCAT
451 AAAATAATATGTATACACTCAAAGGTTAAAAACTCATTTATAATAGTTATGAGTTCACATGGTAT
* *
8513981 GATATATTTAAGTTTGTGTATCGTACCATACTAGCCCATGTGTCATATAATGACACTGACCTTTA
516 GACATATTTAAGTTTGTGTATCGTACCATACTAACCCATGTGTCATATAATGACACTGACCTTTA
*
8514046 TCGGATTGTGCTATACCATCTCATGAACTTAAAAGTTTTTAACCTAACATCGAACTCATATGTAT
581 TCGGATTGTGCTATACCATCTCATGAACTTAAAAGTTTTTAACCTAACATGGAACTCATATGTAT
*
8514111 TAAGTTTGGTCTAATTTAATTGTTTAATATTAAATTGTATCAAACATGACTCATAATATATCAAA
646 TAAGTTTGGTCTAATTTAATTGTTTAATATCAAATTGTATCAAACATGACTCATAATATATCAAA
* *
8514176 TCATATTGTTTCTACTTTTCAATCCATTTGATACCTATATATGAGATAGAAAAGTCTAACATTGA
711 TCATATCGTTTCTACTTTTCAATCCATTTGACACCTATATATGAGATAGAAAAGTCTAACATTGA
*
8514241 AAACTAAAGTTTGATAGCTCATTTTCTTTGTACTATTAGCTCGGTGGGCTGTGGCTAAAAATTAT
776 AAAATAAAGTTTGATAGCTCATTTTCTTTGTACTATTAGCTCGGTGGGCTGTGGCTAAAAATTAT
8514306 TGACG
841 TGACG
* * *
8514311 TAAGAATATTGACTCTTACTTTTCCAACCATTTACACTTGAATTTTTTTTCGTTCTTTCTAATGC
1 TAAGAATATTTACTCTTACTTTTCCAACCATTTACACTTGAA-TTTTTTTCTTTCTTT-TTATGC
* * * * *
8514376 AAACAAACGCAAGTGTACGGATTGTAAAAGTAATATAAATAGAAAGTATCGAGTATCGTCTTGAC
64 CAACAAACGCAAGTGTACGGATTGTATAAGTAATATAAATAGGAAGTATCAAGTATCGTCTTCAC
*
8514441 AGGATTGAATTAAGTTAACCTAAAGCTAATTATCAAAATCAGGCACTTAGATTATATTTGGCTCT
129 AGGATTGAATTAAGTTAACCTAAAGCTAATTACCAAAATCAGGCACTTAGATTATATTTGGCTCT
* *
8514506 AACAAAAATTAGGGAAATTATTAAATTATCCTAAATTAGGCATACAATTAATATCAAGTAAATTA
194 AACAAAAATTAGGGAAATTATTAAATTATCCTAAATTAAGCATACAATTAATACCAAGTAAATTA
* * *
8514571 AAACTTAATGAATAACAAATTATGGAAGTTAACTAATTGAACCTAAACTTAATAAATTAGGAAAC
259 AAACCTAATGACTAACAAATTATGGAAGTTAACTAATTGAACCTAAACTTACTAAATTAGGAAAC
* * *
8514636 TTACCAAAATTAGAAGGTTGCTAGAAATGAAAGGTTTCTAAAAAAAAAAAAGTTCTACAATAGCA
324 TTACCAAAA-T-GAAAGTTGCTAGAAATGAAAGGTTTCT-AAAAAAAGAAAGTTCTACAATAGAA
*
8514701 AGGCAAAATTTTAAATATAAACTAGTAACATAAATGAAAAATAATATAATTTTATTAGAATATAA
386 AGGCAAAATTTTAAATCTAAACTAGTAACATAAATGAAAAATAATATAATTTTATTAGAATATAA
* *
8514766 AAAATAATTTGTATACACAT-AAATGTTAAAAACTCATTTATAATAGTTATGAGTTCACATGGTA
451 AAAATAATATGTATACAC-TCAAAGGTTAAAAACTCATTTATAATAGTTATGAGTTCACATGGTA
* * *
8514830 TAACATATTTAAATTTGTGTATCGTATCATACTAACCCATGTGTCATATAATGACACTGACCTTT
515 TGACATATTTAAGTTTGTGTATCGTACCATACTAACCCATGTGTCATATAATGACACTGACCTTT
* * **
8514895 ATCGGATTGTGCTATACCATCTCATGAACTAAAAAGTTTTTAACCTAACATGGAAATTGTATGTA
580 ATCGGATTGTGCTATACCATCTCATGAACTTAAAAGTTTTTAACCTAACATGGAACTCATATGTA
*
8514960 TTAAGTTTGGTCTAATTTAATTGTTTAATATCAAATTGTATCAAACATGACTCATAATATATTAA
645 TTAAGTTTGGTCTAATTTAATTGTTTAATATCAAATTGTATCAAACATGACTCATAATATATCAA
*
8515025 ATCATGTCGTTTCTACTTTTCAATCCATTTGACACCTATATATGAGATAGAAAAGTCTAACATTG
710 ATCATATCGTTTCTACTTTTCAATCCATTTGACACCTATATATGAGATAGAAAAGTCTAACATTG
* *
8515090 AAAAAAAAAGTTTGATAGCTCATTTTCTTTGTACTGTTAGCTCGGTGGGCTGTGGCTAAAAATTA
775 AAAAATAAAGTTTGATAGCTCATTTTCTTTGTACTATTAGCTCGGTGGGCTGTGGCTAAAAATTA
8515155 TTGACG
840 TTGACG
8515161 T
1 T
8515162 GAGAGACGGC
Statistics
Matches: 1580, Mismatches: 106, Indels: 27
0.92 0.06 0.02
Matches are distributed among these distances:
847 45 0.03
848 259 0.16
849 262 0.17
850 992 0.63
851 22 0.01
ACGTcount: A:0.39, C:0.14, G:0.13, T:0.34
Consensus pattern (845 bp):
TAAGAATATTTACTCTTACTTTTCCAACCATTTACACTTGAATTTTTTTCTTTCTTTTTATGCCA
ACAAACGCAAGTGTACGGATTGTATAAGTAATATAAATAGGAAGTATCAAGTATCGTCTTCACAG
GATTGAATTAAGTTAACCTAAAGCTAATTACCAAAATCAGGCACTTAGATTATATTTGGCTCTAA
CAAAAATTAGGGAAATTATTAAATTATCCTAAATTAAGCATACAATTAATACCAAGTAAATTAAA
ACCTAATGACTAACAAATTATGGAAGTTAACTAATTGAACCTAAACTTACTAAATTAGGAAACTT
ACCAAAATGAAAGTTGCTAGAAATGAAAGGTTTCTAAAAAAAGAAAGTTCTACAATAGAAAGGCA
AAATTTTAAATCTAAACTAGTAACATAAATGAAAAATAATATAATTTTATTAGAATATAAAAAAT
AATATGTATACACTCAAAGGTTAAAAACTCATTTATAATAGTTATGAGTTCACATGGTATGACAT
ATTTAAGTTTGTGTATCGTACCATACTAACCCATGTGTCATATAATGACACTGACCTTTATCGGA
TTGTGCTATACCATCTCATGAACTTAAAAGTTTTTAACCTAACATGGAACTCATATGTATTAAGT
TTGGTCTAATTTAATTGTTTAATATCAAATTGTATCAAACATGACTCATAATATATCAAATCATA
TCGTTTCTACTTTTCAATCCATTTGACACCTATATATGAGATAGAAAAGTCTAACATTGAAAAAT
AAAGTTTGATAGCTCATTTTCTTTGTACTATTAGCTCGGTGGGCTGTGGCTAAAAATTATTGACG
Found at i:8515657 original size:3 final size:3
Alignment explanation
Indices: 8515649--8515678 Score: 60
Period size: 3 Copynumber: 10.0 Consensus size: 3
8515639 GACTTGTTTC
8515649 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
8515679 CCAGTTCAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:8522312 original size:23 final size:23
Alignment explanation
Indices: 8522282--8522330 Score: 89
Period size: 23 Copynumber: 2.1 Consensus size: 23
8522272 TCTTGGTAAG
8522282 TTTAAGCCTTACCTGATATATTT
1 TTTAAGCCTTACCTGATATATTT
*
8522305 TTTAAGCCTTACTTGATATATTT
1 TTTAAGCCTTACCTGATATATTT
8522328 TTT
1 TTT
8522331 CTTTTTTTAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.24, C:0.14, G:0.08, T:0.53
Consensus pattern (23 bp):
TTTAAGCCTTACCTGATATATTT
Found at i:8525965 original size:7 final size:7
Alignment explanation
Indices: 8525953--8525986 Score: 50
Period size: 7 Copynumber: 4.9 Consensus size: 7
8525943 TATATTCAGT
8525953 AAATTTA
1 AAATTTA
8525960 AAATTTA
1 AAATTTA
8525967 AAATTTA
1 AAATTTA
*
8525974 ATATTTA
1 AAATTTA
*
8525981 TAATTT
1 AAATTT
8525987 TTTTCATTGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
7 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (7 bp):
AAATTTA
Found at i:8527791 original size:17 final size:16
Alignment explanation
Indices: 8527771--8527831 Score: 54
Period size: 17 Copynumber: 3.8 Consensus size: 16
8527761 GAAACTTACC
8527771 AAAAATAGAAAGTTGCT
1 AAAAATAGAAAGTT-CT
8527788 AAAAAT-GAAAGGTTTCT
1 AAAAATAGAAA-G-TTCT
* *
8527805 AAAAAAAGAATGTTCT
1 AAAAATAGAAAGTTCT
*
8527821 -ACAATAGAAAG
1 AAAAATAGAAAG
8527832 GCAAAAATTT
Statistics
Matches: 36, Mismatches: 5, Indels: 8
0.73 0.10 0.16
Matches are distributed among these distances:
15 8 0.22
16 8 0.22
17 15 0.42
18 5 0.14
ACGTcount: A:0.54, C:0.07, G:0.16, T:0.23
Consensus pattern (16 bp):
AAAAATAGAAAGTTCT
Found at i:8527797 original size:16 final size:18
Alignment explanation
Indices: 8527771--8527814 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 18
8527761 GAAACTTACC
8527771 AAAAATAGAAA-GTTGCT
1 AAAAATAGAAAGGTTGCT
*
8527788 AAAAAT-GAAAGGTTTCT
1 AAAAATAGAAAGGTTGCT
*
8527805 AAAAAAAGAA
1 AAAAATAGAA
8527815 TGTTCTACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
16 4 0.17
17 16 0.70
18 3 0.13
ACGTcount: A:0.59, C:0.05, G:0.16, T:0.20
Consensus pattern (18 bp):
AAAAATAGAAAGGTTGCT
Found at i:8529526 original size:21 final size:20
Alignment explanation
Indices: 8529481--8529569 Score: 91
Period size: 20 Copynumber: 4.5 Consensus size: 20
8529471 AAACAAAAAT
8529481 TATCATGCAATAATATAATA
1 TATCATGCAATAATATAATA
8529501 TATCATGCAATAATAATACA-A
1 TATCATGCAATAAT-ATA-ATA
8529522 TATCATGCAA-ATATATTAAT-
1 TATCATGCAATA-ATA-TAATA
8529542 TATCATGCAACTAA-AT-ATA
1 TATCATGCAA-TAATATAATA
8529561 -ATCATGCAA
1 TATCATGCAA
8529570 CTATACAAAA
Statistics
Matches: 61, Mismatches: 0, Indels: 18
0.77 0.00 0.23
Matches are distributed among these distances:
18 11 0.18
19 1 0.02
20 28 0.46
21 19 0.31
22 2 0.03
ACGTcount: A:0.48, C:0.13, G:0.06, T:0.33
Consensus pattern (20 bp):
TATCATGCAATAATATAATA
Found at i:8529748 original size:25 final size:25
Alignment explanation
Indices: 8529718--8529778 Score: 79
Period size: 25 Copynumber: 2.4 Consensus size: 25
8529708 ATCAACCATT
8529718 AAAAATAAAAATAAAAAATCAAA-CA
1 AAAAATAAAAATAAAAAAT-AAACCA
* *
8529743 AAAAATCAAAATAGAAAATAAACCA
1 AAAAATAAAAATAAAAAATAAACCA
*
8529768 AAAAAAAAAAA
1 AAAAATAAAAA
8529779 AAGAAAAGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
24 3 0.10
25 28 0.90
ACGTcount: A:0.80, C:0.08, G:0.02, T:0.10
Consensus pattern (25 bp):
AAAAATAAAAATAAAAAATAAACCA
Found at i:8529783 original size:25 final size:25
Alignment explanation
Indices: 8529718--8529785 Score: 68
Period size: 25 Copynumber: 2.8 Consensus size: 25
8529708 ATCAACCATT
* *
8529718 AAAAATAAAAATAA-AAAATCAAAC
1 AAAAAAAAAAAAAAGAAAATCAAAC
** *
8529742 AAAAAATCAAAATAGAAAAT-AAACC
1 AAAAAAAAAAAAAAGAAAATCAAA-C
8529767 AAAAAAAAAAAAAAGAAAA
1 AAAAAAAAAAAAAAGAAAA
8529786 GAAAAAACTT
Statistics
Matches: 34, Mismatches: 8, Indels: 3
0.76 0.18 0.07
Matches are distributed among these distances:
24 12 0.35
25 22 0.65
ACGTcount: A:0.81, C:0.07, G:0.03, T:0.09
Consensus pattern (25 bp):
AAAAAAAAAAAAAAGAAAATCAAAC
Found at i:8531442 original size:154 final size:154
Alignment explanation
Indices: 8531154--8531445 Score: 446
Period size: 154 Copynumber: 1.9 Consensus size: 154
8531144 GTTGCTTCTA
* * *
8531154 GTGATCATATTATTCACTCCGGTGATCGACCTATTATTATCAATTTCAACTTTTTCTTGAATCAA
1 GTGATCACATTAATCACTCCGGTGATCGACCTATTATTATCAATTTCAACCTTTTCTTGAATCAA
* * * *
8531219 TTCATCTTTTCAGGTTTTTTTTCTTTCATTTTCTATCTTTTTTCTCTATCTCGAATGGGTTCTTT
66 CTCATCTTTTCAGGCTTTTTTTCTTCCATTTTCTATCTTTCTTCTCTATCTCGAATGGGTTCTTT
8531284 TCAGTCTTAGATGTAGTTTGTCTG
131 TCAGTCTTAGATGTAGTTTGTCTG
* *
8531308 GTGATCACATTAATCACTTCGGTGATCGACCTATTATTATCAATTTTAACCTTTTCTTGAATCAA
1 GTGATCACATTAATCACTCCGGTGATCGACCTATTATTATCAATTTCAACCTTTTCTTGAATCAA
*
8531373 CTCATCTTTTCATGCTTTTTTTCTTCCATTTTCTA-CTTTCCTTCTCTATCTC-AGATGGGTT-T
66 CTCATCTTTTCAGGCTTTTTTTCTTCCATTTTCTATCTTT-CTTCTCTATCTCGA-ATGGGTTCT
8531435 TTCTCAGTCTT
129 TT-TCAGTCTT
8531446 GGCTGAGTTT
Statistics
Matches: 125, Mismatches: 10, Indels: 6
0.89 0.07 0.04
Matches are distributed among these distances:
153 8 0.06
154 117 0.94
ACGTcount: A:0.19, C:0.21, G:0.11, T:0.49
Consensus pattern (154 bp):
GTGATCACATTAATCACTCCGGTGATCGACCTATTATTATCAATTTCAACCTTTTCTTGAATCAA
CTCATCTTTTCAGGCTTTTTTTCTTCCATTTTCTATCTTTCTTCTCTATCTCGAATGGGTTCTTT
TCAGTCTTAGATGTAGTTTGTCTG
Found at i:8534588 original size:5 final size:5
Alignment explanation
Indices: 8534578--8534609 Score: 55
Period size: 5 Copynumber: 6.4 Consensus size: 5
8534568 TTCATTCAAT
*
8534578 TTAAA TTAAA TGAAA TTAAA TTAAA TTAAA TT
1 TTAAA TTAAA TTAAA TTAAA TTAAA TTAAA TT
8534610 TTATTAGTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
5 25 1.00
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (5 bp):
TTAAA
Found at i:8534741 original size:16 final size:16
Alignment explanation
Indices: 8534720--8534750 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
8534710 TTATTAAAAT
8534720 TTAAAAAATATATAAA
1 TTAAAAAATATATAAA
*
8534736 TTAAAATATATATAA
1 TTAAAAAATATATAA
8534751 TTCGATTCGA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (16 bp):
TTAAAAAATATATAAA
Found at i:8534743 original size:14 final size:15
Alignment explanation
Indices: 8534724--8534752 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
8534714 TAAAATTTAA
8534724 AAAATATATA-AATT
1 AAAATATATATAATT
8534738 AAAATATATATAATT
1 AAAATATATATAATT
8534753 CGATTCGATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (15 bp):
AAAATATATATAATT
Found at i:8535126 original size:15 final size:13
Alignment explanation
Indices: 8535100--8535143 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 13
8535090 TAAATATTAA
8535100 TTTTAATAAAAAT
1 TTTTAATAAAAAT
8535113 TATTTAATATAAAAT
1 T-TTTAATA-AAAAT
8535128 TTTT-ATAAAATAT
1 TTTTAATAAAA-AT
8535141 TTT
1 TTT
8535144 AATCATAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 3 0.11
13 9 0.32
14 10 0.36
15 6 0.21
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (13 bp):
TTTTAATAAAAAT
Found at i:8535137 original size:26 final size:28
Alignment explanation
Indices: 8535098--8535151 Score: 69
Period size: 27 Copynumber: 2.0 Consensus size: 28
8535088 TTTAAATATT
8535098 AATTTTAATAAAAAT-TATTTAAT-ATAA
1 AATTTTAATAAAAATAT-TTTAATCATAA
*
8535125 AATTTTTAT-AAAATATTTTAATCATAA
1 AATTTTAATAAAAATATTTTAATCATAA
8535152 TTAAAAAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
26 11 0.46
27 13 0.54
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (28 bp):
AATTTTAATAAAAATATTTTAATCATAA
Found at i:8536213 original size:17 final size:17
Alignment explanation
Indices: 8536193--8536228 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
8536183 ACTATCACGC
*
8536193 TTGGAAAATTTTCAAGT
1 TTGGAAAAATTTCAAGT
8536210 TTGGAAAAATTTCAAGT
1 TTGGAAAAATTTCAAGT
8536227 TT
1 TT
8536229 ATGAGAATCA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.36, C:0.06, G:0.17, T:0.42
Consensus pattern (17 bp):
TTGGAAAAATTTCAAGT
Found at i:8539341 original size:62 final size:62
Alignment explanation
Indices: 8539160--8539341 Score: 181
Period size: 62 Copynumber: 2.9 Consensus size: 62
8539150 TTTTTTGTAG
* * * ** *
8539160 AAAACGCCTTTAATAATCGTTTCT-ATTTTTTATGAAAGGATTATTCAAAGTGTCGTCTATCA
1 AAAATGCCTTTAATAATC-TCTCTAATTTTTTATGAAAGGATTATTCAAGGTGTTTTCTATAA
* * ** *
8539222 AAAATGCCTTTAATAATCTC-CTATCCAATTTTTATGAAGGGATTATTCAAGACGTTTTCTGTAA
1 AAAATGCCTTTAATAATCTCTCTA---ATTTTTTATGAAAGGATTATTCAAGGTGTTTTCTAT-A
8539286 A
62 A
* *
8539287 AAAATGCCTTTAATAATCACTCTAATTTTTTA-GAAAAGATTATTCAAGGTGTTTT
1 AAAATGCCTTTAATAATCTCTCTAATTTTTTATGAAAGGATTATTCAAGGTGTTTT
8539342 AGTCAGTGGA
Statistics
Matches: 97, Mismatches: 17, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
60 2 0.02
61 1 0.01
62 36 0.37
63 7 0.07
64 28 0.29
65 20 0.21
66 3 0.03
ACGTcount: A:0.34, C:0.14, G:0.12, T:0.40
Consensus pattern (62 bp):
AAAATGCCTTTAATAATCTCTCTAATTTTTTATGAAAGGATTATTCAAGGTGTTTTCTATAA
Found at i:8539920 original size:62 final size:61
Alignment explanation
Indices: 8539552--8539922 Score: 272
Period size: 63 Copynumber: 5.9 Consensus size: 61
8539542 TTTTTTATAG
* * * * *
8539552 AAAATACCTTCAATAATCCCCTCTAAAAAATTGGATGTGATTATTAAAGGCA-TTTTTGACCAA
1 AAAATACCTTCAATAAT-CTCTCTAAAAAATT-TAAGGGATTATTAAAGGCATTTTTTGATC-A
* * * * * * *
8539615 AAAATGCCATCAATAATCTCCTTTAAAAAATTGAAAGGGATTATTGAAGGC-GTATTTGATCA
1 AAAATACCTTCAATAATCT-CTCTAAAAAATT-TAAGGGATTATTAAAGGCATTTTTTGATCA
* * * ** *
8539677 AAAAGACTTTCAATAATCTCTTTATAAAAATTTAAGAGGATTATTAAAGATATTTTTTTA-CAA
1 AAAATACCTTCAATAATCTCTCTA-AAAAATTTAAG-GGATTATTAAAGGCATTTTTTGATC-A
* *
8539740 AAAATACCTTCAATAATCTCTTCTAAAAAATTAAAGGGGATTATTGAA-G-ATATTTTTGATCA
1 AAAATACCTTCAATAATCTC-TCTAAAAAATTTAA-GGGATTATTAAAGGCAT-TTTTTGATCA
* * * ** *
8539802 AAAA-ACGTCTACAATAA-CTCTTTATCAAAATTTAAGGGGATTATTAAAGGTGTTTTTTTA-CA
1 AAAATAC--CTTCAATAATCTCTCTA-AAAAATTTAA-GGGATTATTAAAGGCATTTTTTGATCA
* * *
8539864 GAAAATACCTTTAATAATCTTCTCTAAAAAATTTAAGAGATTATTGAAGGCATTTTTTG
1 -AAAATACCTTCAATAATC-TCTCTAAAAAATTTAAGGGATTATTAAAGGCATTTTTTG
8539923 TCTGAAATGT
Statistics
Matches: 245, Mismatches: 44, Indels: 39
0.75 0.13 0.12
Matches are distributed among these distances:
61 15 0.06
62 97 0.40
63 121 0.49
64 12 0.05
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.36
Consensus pattern (61 bp):
AAAATACCTTCAATAATCTCTCTAAAAAATTTAAGGGATTATTAAAGGCATTTTTTGATCA
Found at i:8539921 original size:125 final size:125
Alignment explanation
Indices: 8539590--8539922 Score: 392
Period size: 125 Copynumber: 2.7 Consensus size: 125
8539580 AATTGGATGT
** * * * * *
8539590 GATTATTAAAGGCA-TTTTTGACCAAAAAATGCCATCAATAATCTCCTTTAAAAAATTGAAAGGG
1 GATTATTAAAGATATTTTTTTA-CAAAAAATACCTTCAATAATCTTCTCTAAAAAATT-AAAGGG
* * *
8539654 ATTATTGAAGGC-GTATTTGATCAAAAAGACTTTCAATAATCTCTTTATAAAAATTTAAGAG
64 ATTATTGAAGGCATTTTTTGATCAAAAAGACTTACAATAATCTCTTTATAAAAATTTAAGAG
8539715 GATTATTAAAGATATTTTTTTACAAAAAATACCTTCAATAATC-TCTTCTAAAAAATTAAAGGGG
1 GATTATTAAAGATATTTTTTTACAAAAAATACCTTCAATAATCTTC-TCTAAAAAATTAAA-GGG
* *
8539779 ATTATTGAA-G-ATATTTTTGATCAAAAA-ACGTCTACAATAA-CTCTTTATCAAAATTTAAGGG
64 ATTATTGAAGGCAT-TTTTTGATCAAAAAGAC-T-TACAATAATCTCTTTATAAAAATTTAAGAG
* * * * * *
8539840 GATTATTAAAGGTGTTTTTTTACAGAAAATACCTTTAATAATCTTCTCTAAAAAATTTAAGAGAT
1 GATTATTAAAGATATTTTTTTACAAAAAATACCTTCAATAATCTTCTCTAAAAAATTAAAGGGAT
8539905 TATTGAAGGCATTTTTTG
66 TATTGAAGGCATTTTTTG
8539923 TCTGAAATGT
Statistics
Matches: 180, Mismatches: 18, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
124 18 0.10
125 145 0.81
126 17 0.09
ACGTcount: A:0.41, C:0.11, G:0.12, T:0.36
Consensus pattern (125 bp):
GATTATTAAAGATATTTTTTTACAAAAAATACCTTCAATAATCTTCTCTAAAAAATTAAAGGGAT
TATTGAAGGCATTTTTTGATCAAAAAGACTTACAATAATCTCTTTATAAAAATTTAAGAG
Found at i:8544804 original size:25 final size:25
Alignment explanation
Indices: 8544767--8544816 Score: 66
Period size: 25 Copynumber: 2.0 Consensus size: 25
8544757 TGGGATATTA
*
8544767 AAAAATTTCAAGTAAAGAT-TTTTT
1 AAAAATTTCAAGTAAAAATATTTTT
*
8544791 AAAAATTCTTAAGTAAAAATATTTTT
1 AAAAATT-TCAAGTAAAAATATTTTT
8544817 TTAAAATGCT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
24 7 0.32
25 10 0.45
26 5 0.23
ACGTcount: A:0.48, C:0.04, G:0.06, T:0.42
Consensus pattern (25 bp):
AAAAATTTCAAGTAAAAATATTTTT
Found at i:8545961 original size:21 final size:21
Alignment explanation
Indices: 8545937--8545979 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
8545927 AAAACCTGAT
*
8545937 AAAAGTAACAACAATAATAGC
1 AAAAGCAACAACAATAATAGC
* *
8545958 AAAAGCGACAACAATATTAGC
1 AAAAGCAACAACAATAATAGC
8545979 A
1 A
8545980 GCAACATCTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.58, C:0.16, G:0.12, T:0.14
Consensus pattern (21 bp):
AAAAGCAACAACAATAATAGC
Found at i:8548248 original size:22 final size:22
Alignment explanation
Indices: 8548212--8548498 Score: 99
Period size: 22 Copynumber: 12.7 Consensus size: 22
8548202 TAATAATTAG
8548212 TAACTTAAT-GATAAATCAATAA
1 TAACTTAATAG-TAAATCAATAA
* *
8548234 TAATTTAATAGTAAAAT-AATGA
1 TAACTTAATAGT-AAATCAATAA
* * * **
8548256 TAACTTAGTAGAAAATCAGTTT
1 TAACTTAATAGTAAATCAATAA
** * * *
8548278 TAGTTTAGTAGT-AATTAATTGA
1 TAACTTAATAGTAAATCAA-TAA
*
8548300 TAAACTTAGTAGTAAATC-ATAAA
1 T-AACTTAATAGTAAATCAAT-AA
* *
8548323 TAACTTATTAATAAATCAATGAA
1 TAACTTAATAGTAAATCAAT-AA
* * *
8548346 -AATTTAATAGTGAATCATTGAA
1 TAACTTAATAGTAAATCAAT-AA
*
8548368 -AACTTAAAAGTAAATCAAT-A
1 TAACTTAATAGTAAATCAATAA
* * * * *
8548388 TAGCTTAGTAGT-AGTGAATTTAG
1 TAACTTAATAGTAAATCAA--TAA
*
8548411 TAACTTAATAACTAATAGTCAATCAAAGA
1 TAACTTAAT-AGTAA-A-TCAAT---A-A
8548440 TAACTTAATAGTAAATC-ATAGA
1 TAACTTAATAGTAAATCAATA-A
* *
8548462 TAATTTAATA-TAAATCAGTAA
1 TAACTTAATAGTAAATCAATAA
*
8548483 TAACTTAATAATAAAT
1 TAACTTAATAGTAAAT
8548499 TATAGTTAAT
Statistics
Matches: 196, Mismatches: 47, Indels: 44
0.68 0.16 0.15
Matches are distributed among these distances:
20 5 0.03
21 32 0.16
22 102 0.52
23 28 0.14
24 5 0.03
25 4 0.02
26 2 0.01
27 4 0.02
28 5 0.03
29 9 0.05
ACGTcount: A:0.49, C:0.07, G:0.10, T:0.34
Consensus pattern (22 bp):
TAACTTAATAGTAAATCAATAA
Found at i:8548617 original size:22 final size:22
Alignment explanation
Indices: 8548560--8548640 Score: 67
Period size: 22 Copynumber: 3.7 Consensus size: 22
8548550 AACTAGGTAC
* * *
8548560 TAAATCAATGACAATATAATAG
1 TAAATCATTGATAACATAATAG
*
8548582 TAAATACA-TAATAACATAATAG
1 TAAAT-CATTGATAACATAATAG
**
8548604 TAAATCATTGATAATTTAA-ATG
1 TAAATCATTGATAACATAATA-G
*
8548626 TAAATTATTGATAAC
1 TAAATCATTGATAAC
8548641 TTAGTAAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 6
0.77 0.13 0.10
Matches are distributed among these distances:
21 3 0.06
22 43 0.90
23 2 0.04
ACGTcount: A:0.52, C:0.07, G:0.07, T:0.33
Consensus pattern (22 bp):
TAAATCATTGATAACATAATAG
Found at i:8548782 original size:22 final size:22
Alignment explanation
Indices: 8548756--8548914 Score: 108
Period size: 22 Copynumber: 7.2 Consensus size: 22
8548746 TCAGTTATAA
* *
8548756 TAAATGATCGATAACTTAGTAG
1 TAAATCATCGATAATTTAGTAG
** * *
8548778 TAAATCATTAACAATTTACTAG
1 TAAATCATCGATAATTTAGTAG
* * *
8548800 TAAATTATTC-ATAATTTAATGG
1 TAAATCA-TCGATAATTTAGTAG
*
8548822 TAAATCATTC-ATAAATTAGTAG
1 TAAATCA-TCGATAATTTAGTAG
* *
8548844 TAAATCAAT-GCTAATTTAATAG
1 TAAATC-ATCGATAATTTAGTAG
**
8548866 TAAATCATTAATAATTTAGTAG
1 TAAATCATCGATAATTTAGTAG
* * * *
8548888 TACATTATTGATAACTTAGTAG
1 TAAATCATCGATAATTTAGTAG
8548910 TAAAT
1 TAAAT
8548915 TGCTAAATAG
Statistics
Matches: 107, Mismatches: 26, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
21 2 0.02
22 103 0.96
23 2 0.02
ACGTcount: A:0.43, C:0.08, G:0.10, T:0.38
Consensus pattern (22 bp):
TAAATCATCGATAATTTAGTAG
Found at i:8548827 original size:44 final size:44
Alignment explanation
Indices: 8548766--8548914 Score: 165
Period size: 44 Copynumber: 3.4 Consensus size: 44
8548756 TAAATGATCG
* * * *
8548766 ATAACTTAGTAGTAAATCATTAACAATTTACTAGTAAATTATTC
1 ATAATTTAATAGTAAATCATTAATAATTTAGTAGTAAATTATTC
* * * * *
8548810 ATAATTTAATGGTAAATCATTCATAAATTAGTAGTAAATCAATGC
1 ATAATTTAATAGTAAATCATTAATAATTTAGTAGTAAAT-TATTC
* *
8548855 -TAATTTAATAGTAAATCATTAATAATTTAGTAGTACATTATTG
1 ATAATTTAATAGTAAATCATTAATAATTTAGTAGTAAATTATTC
* *
8548898 ATAACTTAGTAGTAAAT
1 ATAATTTAATAGTAAAT
8548915 TGCTAAATAG
Statistics
Matches: 85, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
43 2 0.02
44 80 0.94
45 3 0.04
ACGTcount: A:0.44, C:0.08, G:0.09, T:0.39
Consensus pattern (44 bp):
ATAATTTAATAGTAAATCATTAATAATTTAGTAGTAAATTATTC
Found at i:8548867 original size:66 final size:66
Alignment explanation
Indices: 8548766--8548914 Score: 183
Period size: 66 Copynumber: 2.3 Consensus size: 66
8548756 TAAATGATCG
* * * * *
8548766 ATAACTTAGTAGTAAATCATTAACAATTTACTAGTAAATTATTCATAATTTAATGGTAAATCATT
1 ATAACTTAGTAGTAAATCAATAACAATTTAATAGTAAATCATTAATAATTTAATAGTAAATCATT
8548831 C
66 C
* * * * *
8548832 ATAAATTAGTAGTAAATCAAT-GCTAATTTAATAGTAAATCATTAATAATTTAGTAGTACATTAT
1 ATAACTTAGTAGTAAATCAATAAC-AATTTAATAGTAAATCATTAATAATTTAATAGTAAATCAT
*
8548896 TG
65 TC
8548898 ATAACTTAGTAGTAAAT
1 ATAACTTAGTAGTAAAT
8548915 TGCTAAATAG
Statistics
Matches: 70, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
65 1 0.01
66 69 0.99
ACGTcount: A:0.44, C:0.08, G:0.09, T:0.39
Consensus pattern (66 bp):
ATAACTTAGTAGTAAATCAATAACAATTTAATAGTAAATCATTAATAATTTAATAGTAAATCATT
C
Found at i:8549256 original size:21 final size:22
Alignment explanation
Indices: 8549232--8549329 Score: 85
Period size: 21 Copynumber: 4.6 Consensus size: 22
8549222 AATTATTATT
*
8549232 AAAATTACATCAATAGGTTACA
1 AAAATTATATCAATAGGTTACA
* * *
8549254 AAAATTTTATCAA-AGATTACT
1 AAAATTATATCAATAGGTTACA
* *
8549275 AAAATTATATGAAT-GGTTACC
1 AAAATTATATCAATAGGTTACA
* *
8549296 AAAATTATATC-ATAAGTTACC
1 AAAATTATATCAATAGGTTACA
* *
8549317 AAACTAATATCAA
1 AAAATTATATCAA
8549330 AAGTTATCAA
Statistics
Matches: 61, Mismatches: 12, Indels: 6
0.77 0.15 0.08
Matches are distributed among these distances:
20 2 0.03
21 47 0.77
22 12 0.20
ACGTcount: A:0.49, C:0.12, G:0.07, T:0.32
Consensus pattern (22 bp):
AAAATTATATCAATAGGTTACA
Found at i:8549307 original size:42 final size:44
Alignment explanation
Indices: 8549226--8549315 Score: 114
Period size: 42 Copynumber: 2.1 Consensus size: 44
8549216 TATTAAAATT
* *
8549226 ATTATTAAAATTACATCAATAGGTTACAAAAATTTTATCA-AAG
1 ATTACTAAAATTACATCAATAGGTTACAAAAATTATATCATAAG
* * *
8549269 ATTACTAAAATTATATGAAT-GGTTACCAAAATTATATCATAAG
1 ATTACTAAAATTACATCAATAGGTTACAAAAATTATATCATAAG
8549312 -TTAC
1 ATTAC
8549316 CAAACTAATA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
42 21 0.51
43 20 0.49
ACGTcount: A:0.47, C:0.10, G:0.08, T:0.36
Consensus pattern (44 bp):
ATTACTAAAATTACATCAATAGGTTACAAAAATTATATCATAAG
Found at i:8549333 original size:21 final size:21
Alignment explanation
Indices: 8549290--8549363 Score: 76
Period size: 21 Copynumber: 3.5 Consensus size: 21
8549280 TATATGAATG
* *
8549290 GTTACCAAAATTATATCATAA
1 GTTACCAAAATAATATCAAAA
*
8549311 GTTACCAAACTAATATCAAAA
1 GTTACCAAAATAATATCAAAA
* ** *
8549332 GTTATCAAAATTTTACCAAAA
1 GTTACCAAAATAATATCAAAA
*
8549353 GTTATCAAAAT
1 GTTACCAAAAT
8549364 CAAAATTATA
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 45 1.00
ACGTcount: A:0.49, C:0.15, G:0.05, T:0.31
Consensus pattern (21 bp):
GTTACCAAAATAATATCAAAA
Found at i:8549339 original size:10 final size:10
Alignment explanation
Indices: 8549324--8549362 Score: 51
Period size: 10 Copynumber: 3.8 Consensus size: 10
8549314 ACCAAACTAA
8549324 TATCAAAAGT
1 TATCAAAAGT
*
8549334 TATCAAAATTT
1 TATCAAAA-GT
*
8549345 TACCAAAAGT
1 TATCAAAAGT
8549355 TATCAAAA
1 TATCAAAA
8549363 TCAAAATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
10 16 0.67
11 8 0.33
ACGTcount: A:0.51, C:0.13, G:0.05, T:0.31
Consensus pattern (10 bp):
TATCAAAAGT
Done.