Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 41 of 195
Found at i:8550105 original size:61 final size:60
Alignment explanation
Indices: 8549974--8550117 Score: 159
Period size: 61 Copynumber: 2.4 Consensus size: 60
8549964 AGCAATAAAA
** *
8549974 AAGGCATTTTCATAATCGTGGTAAGAAAGTGTAATAGTAATTTTGAAAAATTATAATATG
1 AAGGCATTTTCATAATTATGGTAAGAAAGTGTAATAGTAATTTTGAAAAATGATAATATG
* * **
8550034 AGGGATATTTTCATAATTATGGTAAGAAAG-GTATTATAGTAATTTTGATAAAA-GATGGT-TGG
1 AAGG-CATTTTCATAATTATGGTAAGAAAGTGTA--ATAGTAATTTTGA-AAAATGATAATAT-G
8550096 AAGGCATTTTCATAATTATGGT
1 AAGGCATTTTCATAATTATGGT
8550118 TGTTGAGACA
Statistics
Matches: 70, Mismatches: 9, Indels: 9
0.80 0.10 0.10
Matches are distributed among these distances:
60 6 0.09
61 40 0.57
62 20 0.29
63 4 0.06
ACGTcount: A:0.38, C:0.04, G:0.21, T:0.37
Consensus pattern (60 bp):
AAGGCATTTTCATAATTATGGTAAGAAAGTGTAATAGTAATTTTGAAAAATGATAATATG
Found at i:8551199 original size:87 final size:87
Alignment explanation
Indices: 8551036--8551199 Score: 186
Period size: 87 Copynumber: 1.9 Consensus size: 87
8551026 GTTTTTTTGG
* ** * *
8551036 ATAATTATGGTTAGAGGGTATCATAATAATTTTAATCAATTATAATATAAAAGGGTATTTTTATA
1 ATAATTATGGTTAAAGAATATCATAATAATTTTAACCAATTATAATACAAAAGGGTATTTTTATA
*
8551101 GTGATGATAAGAAGGCATTTTC
66 ATGATGATAAGAAGGCATTTTC
* * * * * *
8551123 ATAATTATGGTTAAAGAATATTATAGTAATTTTTACCAAATTATAATACGAGA-GGTATTTTTGT
1 ATAATTATGGTTAAAGAATATCATAATAATTTTAACC-AATTATAATACAAAAGGGTATTTTTAT
* *
8551187 AATTATGGTAAGA
65 AATGATGATAAGA
8551200 GAGATATTAT
Statistics
Matches: 62, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
87 50 0.81
88 12 0.19
ACGTcount: A:0.40, C:0.04, G:0.16, T:0.40
Consensus pattern (87 bp):
ATAATTATGGTTAAAGAATATCATAATAATTTTAACCAATTATAATACAAAAGGGTATTTTTATA
ATGATGATAAGAAGGCATTTTC
Found at i:8551266 original size:62 final size:63
Alignment explanation
Indices: 8551113--8551266 Score: 172
Period size: 62 Copynumber: 2.5 Consensus size: 63
8551103 GATGATAAGA
* *
8551113 AGGCATTTTCATAATTATGGTTAAAGA-ATATTATAGTAATTTTTACCAAATTATAATACGAG
1 AGGCATTTTCGTAATTATGGTTAAAGAGATATTATAGTAATTTTTACCAAATGATAATACGAG
* * * ** *
8551175 AGGTATTTTTGTAATTATGG-TAAGAGAGATATTATAGTAA-TTTTAGCAAATGATGGTAGGAG
1 AGGCATTTTCGTAATTATGGTTAA-AGAGATATTATAGTAATTTTTACCAAATGATAATACGAG
* *
8551237 -GGCATTTGCGTAATTATGGTTGTAAGAGAT
1 AGGCATTTTCGTAATTATGGTT-AAAGAGAT
8551267 TACAGTAACT
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
61 19 0.25
62 44 0.58
63 13 0.17
ACGTcount: A:0.36, C:0.05, G:0.21, T:0.38
Consensus pattern (63 bp):
AGGCATTTTCGTAATTATGGTTAAAGAGATATTATAGTAATTTTTACCAAATGATAATACGAG
Found at i:8551614 original size:109 final size:110
Alignment explanation
Indices: 8551485--8551686 Score: 248
Period size: 112 Copynumber: 1.8 Consensus size: 110
8551475 TGTAATTATA
* * *
8551485 AAGCAATTAAAAGG-ATATTTTTGTAATTGTGCTTAAA-AGGTATTATAGTAATTTAAACCAATT
1 AAGCAATTAAAAGGAAT-TTTTTGTAATTATGCTTAAAGA-GTATTATAATAATTTAAACCAAAT
8551548 ATAATATAA-GGATAATTTCATAATTAGGTAGGAGATACATTATATG
64 ATAATATAAGGGATAATTTCATAATTAGGTAGGAGATACATTATATG
* * * * *
8551594 AAGCAATTAAAAAAGGATTTTTTTTGTAATTATGGTTAGAGAGTATTATAATAATTTTAGCCAAA
1 AAGCAATT--AAAAGGA-ATTTTTTGTAATTATGCTTAAAGAGTATTATAATAATTTAAACCAAA
* *
8551659 TATAATATAAGGGGTATTTTCATAATTA
63 TATAATATAAGGGATAATTTCATAATTA
8551687 TGATAAGAGA
Statistics
Matches: 77, Mismatches: 10, Indels: 8
0.81 0.11 0.08
Matches are distributed among these distances:
109 8 0.10
111 6 0.08
112 46 0.60
113 17 0.22
ACGTcount: A:0.42, C:0.05, G:0.15, T:0.38
Consensus pattern (110 bp):
AAGCAATTAAAAGGAATTTTTTGTAATTATGCTTAAAGAGTATTATAATAATTTAAACCAAATAT
AATATAAGGGATAATTTCATAATTAGGTAGGAGATACATTATATG
Found at i:8557068 original size:22 final size:22
Alignment explanation
Indices: 8557040--8557081 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
8557030 TCCCAACTTC
8557040 GTTTTGACATATGGTAGGGTTT
1 GTTTTGACATATGGTAGGGTTT
8557062 GTTTTGACATATGGTAGGGT
1 GTTTTGACATATGGTAGGGT
8557082 CTGTGCCATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.19, C:0.05, G:0.33, T:0.43
Consensus pattern (22 bp):
GTTTTGACATATGGTAGGGTTT
Found at i:8559499 original size:20 final size:21
Alignment explanation
Indices: 8559474--8559513 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8559464 AACTCAAGTT
8559474 TAATGATG-CTAAGGT-TAAGA
1 TAATGA-GACTAAGGTCTAAGA
8559494 TAATGAGACTAAGGTCTAAG
1 TAATGAGACTAAGGTCTAAG
8559514 TTGGAGGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.06
20 13 0.72
21 4 0.22
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (21 bp):
TAATGAGACTAAGGTCTAAGA
Found at i:8566661 original size:14 final size:14
Alignment explanation
Indices: 8566642--8566671 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
8566632 ATATAAAATT
*
8566642 ATTTTTTAAAATAA
1 ATTTTTAAAAATAA
8566656 ATTTTTAAAAATAA
1 ATTTTTAAAAATAA
8566670 AT
1 AT
8566672 ATTAAATATG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (14 bp):
ATTTTTAAAAATAA
Found at i:8568057 original size:18 final size:19
Alignment explanation
Indices: 8568017--8568058 Score: 50
Period size: 18 Copynumber: 2.3 Consensus size: 19
8568007 TGTTTTATTT
* **
8568017 TATAAAAATTTAAAATATG
1 TATAAAAATTTAAAAAAAA
8568036 TATAAAAA-TTAAAAAAAA
1 TATAAAAATTTAAAAAAAA
8568054 TATAA
1 TATAA
8568059 TTCGACTCAA
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
18 12 0.60
19 8 0.40
ACGTcount: A:0.67, C:0.00, G:0.02, T:0.31
Consensus pattern (19 bp):
TATAAAAATTTAAAAAAAA
Found at i:8568134 original size:12 final size:12
Alignment explanation
Indices: 8568117--8568145 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
8568107 TTCAAATCTA
8568117 ATATATATATTT
1 ATATATATATTT
8568129 ATATATATATTT
1 ATATATATATTT
8568141 A-ATAT
1 ATATAT
8568146 TCAAATTTGA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
11 4 0.24
12 13 0.76
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
ATATATATATTT
Found at i:8568456 original size:15 final size:16
Alignment explanation
Indices: 8568436--8568470 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
8568426 TTAAATATTA
8568436 ATTTAA-ATAAAATTT
1 ATTTAATATAAAATTT
8568451 ATTTAATATAAAATTT
1 ATTTAATATAAAATTT
8568467 -TTTA
1 ATTTA
8568471 TAAAATATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 10 0.53
16 9 0.47
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
ATTTAATATAAAATTT
Found at i:8571216 original size:62 final size:61
Alignment explanation
Indices: 8571130--8571255 Score: 166
Period size: 62 Copynumber: 2.0 Consensus size: 61
8571120 TCAATAAATT
* * *
8571130 TTTTGTCAAAAAACTCCTTCAATAAT-CCCTTTCATTTTTTATAAGGGGATTATT-AAAGGCG
1 TTTTGTCAAAAAACGCCTTCAATAATCCCCTCTAATTTTTTATAA-GGGATTATTGAAA-GCG
* *
8571191 TTTTGTGCAAAAAACGCCTTTAATAATCCCCTCTAATTTTTTATGAGGGATTATTGAAAGCG
1 TTTTGT-CAAAAAACGCCTTCAATAATCCCCTCTAATTTTTTATAAGGGATTATTGAAAGCG
8571253 TTT
1 TTT
8571256 CAGAAAAAAA
Statistics
Matches: 57, Mismatches: 5, Indels: 5
0.85 0.07 0.07
Matches are distributed among these distances:
61 6 0.11
62 33 0.58
63 18 0.32
ACGTcount: A:0.30, C:0.16, G:0.14, T:0.40
Consensus pattern (61 bp):
TTTTGTCAAAAAACGCCTTCAATAATCCCCTCTAATTTTTTATAAGGGATTATTGAAAGCG
Found at i:8572025 original size:65 final size:65
Alignment explanation
Indices: 8571894--8572051 Score: 178
Period size: 66 Copynumber: 2.4 Consensus size: 65
8571884 ATTCAAGGTA
* * * * ** *
8571894 TTTTTTGCTTGAAATGCCTTCAATAATCCCTTATAAAAAAATTAGAGAGGATTATTAAAGGTATT
1 TTTTTTGCATAAAATGCCTTCAATAATCCCTCATAAAAAAATGAGAGAAAATTATTAAAGGCA-T
8571959 T
65 T
* *
8571960 TTTTTTGCATAAAACGCCTTCAATAATCTCCTCAT-AAAAAATGA-AGAAAATTATTGAAGGCAT
1 TTTTTTGCATAAAATGCCTTCAATAATC-CCTCATAAAAAAATGAGAGAAAATTATTAAAGGCAT
8572023 T
65 T
**
8572024 TTTTTACCA-AAAATGCCTTCAATAATCC
1 TTTTTTGCATAAAATGCCTTCAATAATCC
8572052 TTTACAAATT
Statistics
Matches: 79, Mismatches: 12, Indels: 6
0.81 0.12 0.06
Matches are distributed among these distances:
62 1 0.01
63 17 0.22
64 9 0.11
65 14 0.18
66 33 0.42
67 5 0.06
ACGTcount: A:0.38, C:0.15, G:0.11, T:0.36
Consensus pattern (65 bp):
TTTTTTGCATAAAATGCCTTCAATAATCCCTCATAAAAAAATGAGAGAAAATTATTAAAGGCATT
Found at i:8572587 original size:62 final size:62
Alignment explanation
Indices: 8572496--8572840 Score: 217
Period size: 64 Copynumber: 5.5 Consensus size: 62
8572486 AGCGTTTCAC
* *
8572496 AAAACGCATTCAATAATCCCTTC-ATAAAAATAAAGAAGATTATTGAAGGTATTTTT-TTACA
1 AAAACGCATTCAATAATCCCCTCTA-AAAAATAAAGAAGATTATTAAAGGTATTTTTGTTACA
* * ** * * * *
8572557 GAAAACGCATTTAATAATCTCCTCTAAAAAAT-TGGATGGGATTATTAAAGATATTTTTGGTCAA
1 -AAAACGCATTCAATAATCCCCTCTAAAAAATAAAGA--AGATTATTAAAGGTATTTTT-GTTAC
8572621 A
62 A
*** *
8572622 AAATAC-CA-TCAATAATCCCCTCTAAAAAATGGGGATAGGATTATTAAAGGCATTTTTGGTTA-
1 AAA-ACGCATTCAATAATCCCCTCTAAAAAATAAAGA-A-GATTATTAAAGGTATTTTT-GTTAC
8572684 A
62 A
* * *
8572685 AAAATGCCA-TCAATAATCCCCTCTAAAAAATAAAAAAAAGATTATTAAAAGG-ATTTTTGGTA-
1 AAAACG-CATTCAATAATCCCCTCTAAAAAAT--AAAGAAGATTATT-AAAGGTATTTTTGTTAC
8572747 A
62 A
* * * * * ** * * *
8572748 AAAACGCATTCAATAATCTCTTCATCAAAATTTAAGGGGATTATTGAA--TTTTTTTTTTACA
1 AAAACGCATTCAATAATCCCCTC-TAAAAAATAAAGAAGATTATTAAAGGTATTTTTGTTACA
* *
8572809 GAAAAGGCATTTAATAATCCCCTCTAAAAAAT
1 -AAAACGCATTCAATAATCCCCTCTAAAAAAT
8572841 TAGAGGGGAT
Statistics
Matches: 222, Mismatches: 43, Indels: 37
0.74 0.14 0.12
Matches are distributed among these distances:
60 7 0.03
61 11 0.05
62 57 0.26
63 63 0.28
64 72 0.32
65 11 0.05
66 1 0.00
ACGTcount: A:0.43, C:0.13, G:0.12, T:0.32
Consensus pattern (62 bp):
AAAACGCATTCAATAATCCCCTCTAAAAAATAAAGAAGATTATTAAAGGTATTTTTGTTACA
Found at i:8572636 original size:63 final size:64
Alignment explanation
Indices: 8572569--8572715 Score: 224
Period size: 64 Copynumber: 2.3 Consensus size: 64
8572559 AAACGCATTT
* * * *
8572569 AATAATCTCCTCTAAAAAAT-TGGATGGGATTATTAAAGATATTTTTGGTCAAAAAATACCATC
1 AATAATCCCCTCTAAAAAATGGGGATAGGATTATTAAAGACATTTTTGGTCAAAAAATACCATC
* * *
8572632 AATAATCCCCTCTAAAAAATGGGGATAGGATTATTAAAGGCATTTTTGGTTAAAAAATGCCATC
1 AATAATCCCCTCTAAAAAATGGGGATAGGATTATTAAAGACATTTTTGGTCAAAAAATACCATC
8572696 AATAATCCCCTCTAAAAAAT
1 AATAATCCCCTCTAAAAAAT
8572716 AAAAAAAAGA
Statistics
Matches: 76, Mismatches: 7, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
63 19 0.25
64 57 0.75
ACGTcount: A:0.41, C:0.15, G:0.13, T:0.31
Consensus pattern (64 bp):
AATAATCCCCTCTAAAAAATGGGGATAGGATTATTAAAGACATTTTTGGTCAAAAAATACCATC
Found at i:8572805 original size:63 final size:63
Alignment explanation
Indices: 8572746--8572992 Score: 195
Period size: 62 Copynumber: 4.0 Consensus size: 63
8572736 GATTTTTGGT
* * *
8572746 AAAAAACGCATTCAATAATCTCTTCATCAAAATTTAAGGGGATTATTGAA-TTTTTTTTTTAC
1 AAAAAACGCATTCAATAATCTCTTCATCAAAATTTAAGGGGATTATTGAAGATGTTTTTTGAC
* * * * * * * * *
8572808 AGAAAAGGCATTTAATAATCCCCTC-TAAAAAATTAGAGGGGATTATTGAAGATGTTTTTAGCC
1 AAAAAACGCATTCAATAATCTCTTCATCAAAATTTA-AGGGGATTATTGAAGATGTTTTTTGAC
** * **
8572871 AAAAAATACCTTCAATAATCTTCTT-ATCAAAATTTAAGGGGATTATTGAAGGCGTTTTTT-AC
1 AAAAAACGCATTCAATAATC-TCTTCATCAAAATTTAAGGGGATTATTGAAGATGTTTTTTGAC
* ** *
8572933 AGAAAATAC-C-TTCAATAATC-CTCTC-TAAAAAATTTAAAAGGATTATTGAAGGTGTTTTTT
1 A-AAAA-ACGCATTCAATAATCTCT-TCAT-CAAAATTTAAGGGGATTATTGAAGATGTTTTTT
8572993 TGCCTGAAAC
Statistics
Matches: 146, Mismatches: 30, Indels: 18
0.75 0.15 0.09
Matches are distributed among these distances:
60 2 0.01
61 10 0.07
62 75 0.51
63 48 0.33
64 11 0.08
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (63 bp):
AAAAAACGCATTCAATAATCTCTTCATCAAAATTTAAGGGGATTATTGAAGATGTTTTTTGAC
Found at i:8572841 original size:62 final size:61
Alignment explanation
Indices: 8572774--8572992 Score: 217
Period size: 62 Copynumber: 3.5 Consensus size: 61
8572764 TCTCTTCATC
** ** * * *
8572774 AAAATTTAAGGGGATTATTGAATTTTTTTTTTACAGAAAAGGCATTTAATAATCCCCTCTAA
1 AAAATTTAAGGGGATTATTGAA-GATTTTTTTACAGAAAATACCTTCAATAATCCTCTCTAA
* * * *
8572836 AAAA-TTAGAGGGGATTATTGAAGATGTTTTTAGCCAAAAAATACCTTCAATAATCTTCT-TATC
1 AAAATTTA-AGGGGATTATTGAAGATTTTTTTA--CAGAAAATACCTTCAATAATCCTCTCTA-A
**
8572899 AAAATTTAAGGGGATTATTGAAGGCGTTTTTTACAGAAAATACCTTCAATAATCCTCTCTAA
1 AAAATTTAAGGGGATTATTGAA-GATTTTTTTACAGAAAATACCTTCAATAATCCTCTCTAA
** *
8572961 AAAATTTAAAAGGATTATTGAAGGTGTTTTTT
1 AAAATTTAAGGGGATTATTGAAGAT-TTTTTT
8572993 TGCCTGAAAC
Statistics
Matches: 128, Mismatches: 21, Indels: 16
0.78 0.13 0.10
Matches are distributed among these distances:
61 11 0.09
62 69 0.54
63 38 0.30
64 10 0.08
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.37
Consensus pattern (61 bp):
AAAATTTAAGGGGATTATTGAAGATTTTTTTACAGAAAATACCTTCAATAATCCTCTCTAA
Found at i:8573008 original size:125 final size:125
Alignment explanation
Indices: 8572496--8573015 Score: 344
Period size: 125 Copynumber: 4.1 Consensus size: 125
8572486 AGCGTTTCAC
* * * * ** **
8572496 AAAACGCATTCAATAATCCCTTCAT-AAAAATAAAGAAGATTATTGAAGGTATTTTTTTACAGAA
1 AAAACGCCTTCAATAATCTCTTCATCAAAATTTAAGGGGATTATTGAAGG-CGTTTTTTACAGAA
* * * ** * * * *
8572560 AACG-CATTTAATAATCTCCTCTAAAAAATTGGATGGGATTATTAAAGATATTTTTGGTCAA
65 AA-GACATTCAATAATCCCCTCTAAAAAATTAGAAAGGATTATTGAAGATGTTTTTAGCCAA
** * * * ** ** * *
8572621 AAAATACCATCAATAATCCCCTC-T-AAAAAATGGGGATAGGATTATTAAAGGCATTTTTGGTTA
1 AAAACGCCTTCAATAATCTCTTCATCAAAATTTAAGG---GGATTATTGAAGGC-GTTTT--TTA
* * * * * *
8572684 -A-AAAATGCCA-TCAATAATCCCCTCTAAAAAATAAAAAAAAGATTATT-AAAAGGATTTTT-G
60 CAGAAAA-GACATTCAATAATCCCCTCTAAAAAAT-TAGAAAGGATTATTGAAGATG-TTTTTAG
**
8572744 GTAA
122 CCAA
* ****
8572748 AAAACGCATTCAATAATCTCTTCATCAAAATTTAAGGGGATTATTGAATTTTTTTTTTACAGAAA
1 AAAACGCCTTCAATAATCTCTTCATCAAAATTTAAGGGGATTATTGAAGGCGTTTTTTACAGAAA
* * **
8572813 AGGCATTTAATAATCCCCTCTAAAAAATTAGAGGGGATTATTGAAGATGTTTTTAGCCAA
66 AGACATTCAATAATCCCCTCTAAAAAATTAGAAAGGATTATTGAAGATGTTTTTAGCCAA
**
8572873 AAAATACCTTCAATAATCTTCTT-ATCAAAATTTAAGGGGATTATTGAAGGCGTTTTTTACAGAA
1 AAAACGCCTTCAATAATC-TCTTCATCAAAATTTAAGGGGATTATTGAAGGCGTTTTTTACAGAA
* * * * * *
8572937 AATACCTTCAATAATCCTCTCTAAAAAATTTA-AAAGGATTATTGAAGGTGTTTTTTTGCC-T
65 AAGACATTCAATAATCCCCTCTAAAAAA-TTAGAAAGGATTATTGAAGATG-TTTTTAGCCAA
*
8572998 GAAACGCCTTCAATAATC
1 AAAACGCCTTCAATAATC
8573016 CTTTTTGCAA
Statistics
Matches: 304, Mismatches: 72, Indels: 38
0.73 0.17 0.09
Matches are distributed among these distances:
123 3 0.01
124 25 0.08
125 160 0.53
126 25 0.08
127 64 0.21
128 17 0.06
129 10 0.03
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.33
Consensus pattern (125 bp):
AAAACGCCTTCAATAATCTCTTCATCAAAATTTAAGGGGATTATTGAAGGCGTTTTTTACAGAAA
AGACATTCAATAATCCCCTCTAAAAAATTAGAAAGGATTATTGAAGATGTTTTTAGCCAA
Found at i:8574392 original size:10 final size:10
Alignment explanation
Indices: 8574377--8574405 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
8574367 GTTGTTCATA
8574377 CTCTGTTTTT
1 CTCTGTTTTT
8574387 CTCTGTTTTT
1 CTCTGTTTTT
8574397 CTCTGTTTT
1 CTCTGTTTT
8574406 AAGTATCACT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.00, C:0.21, G:0.10, T:0.69
Consensus pattern (10 bp):
CTCTGTTTTT
Found at i:8575818 original size:34 final size:34
Alignment explanation
Indices: 8575748--8575842 Score: 100
Period size: 34 Copynumber: 2.8 Consensus size: 34
8575738 TTTAACGACG
* * * ** *
8575748 TTTTTAAATACAAACGCCATTAAATTAGTGGTGT
1 TTTTTTAATACAAATGCCACTAAATTAAAGGCGT
*
8575782 TTTTTTAATACAAATGCCACTATATTAAAGGCGT
1 TTTTTTAATACAAATGCCACTAAATTAAAGGCGT
* * *
8575816 TTTTATGATAAAAATGCCACTAAATTA
1 TTTTTTAATACAAATGCCACTAAATTA
8575843 GCGGCATCTT
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 50 1.00
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.38
Consensus pattern (34 bp):
TTTTTTAATACAAATGCCACTAAATTAAAGGCGT
Found at i:8583465 original size:20 final size:21
Alignment explanation
Indices: 8583427--8583467 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
8583417 CCAAACTAAT
8583427 AACCTCATCAATCAAACCCAA
1 AACCTCATCAATCAAACCCAA
* *
8583448 AACCTTATC-ATCATACCCAA
1 AACCTCATCAATCAAACCCAA
8583468 CCATAGCACT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.44, C:0.37, G:0.00, T:0.20
Consensus pattern (21 bp):
AACCTCATCAATCAAACCCAA
Found at i:8584423 original size:20 final size:21
Alignment explanation
Indices: 8584384--8584423 Score: 55
Period size: 20 Copynumber: 2.0 Consensus size: 21
8584374 TTTCTGTAAA
*
8584384 TCATATCTTAAAATCAAAATC
1 TCATATCTTAAAAGCAAAATC
*
8584405 TCATAT-TTTAAAGCAAAAT
1 TCATATCTTAAAAGCAAAAT
8584424 AAAACATCAC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 11 0.65
21 6 0.35
ACGTcount: A:0.47, C:0.15, G:0.03, T:0.35
Consensus pattern (21 bp):
TCATATCTTAAAAGCAAAATC
Found at i:8584975 original size:29 final size:29
Alignment explanation
Indices: 8584933--8584991 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
8584923 CTATATATTG
**
8584933 ATACTAAATTATATTCAAAAATCAAAACA
1 ATACTAAACCATATTCAAAAATCAAAACA
* * *
8584962 ATACTAAACCATATTCTAAACTCATAACA
1 ATACTAAACCATATTCAAAAATCAAAACA
8584991 A
1 A
8584992 AGAAATCATA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (29 bp):
ATACTAAACCATATTCAAAAATCAAAACA
Found at i:8598901 original size:11 final size:10
Alignment explanation
Indices: 8598844--8598913 Score: 60
Period size: 9 Copynumber: 7.4 Consensus size: 10
8598834 TCTCTCATTC
8598844 TTTTTTT-T-
1 TTTTTTTATA
* *
8598852 TTTTTTTTTT
1 TTTTTTTATA
8598862 TTTTTTTA-A
1 TTTTTTTATA
*
8598871 GTTTTTTAT-
1 TTTTTTTATA
8598880 TTTTTTT-TA
1 TTTTTTTATA
8598889 TTTTTTTCATA
1 TTTTTTT-ATA
*
8598900 TTTTTTTAAA
1 TTTTTTTATA
8598910 TTTT
1 TTTT
8598914 GTAAATATTT
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
8 8 0.16
9 21 0.41
10 13 0.25
11 9 0.18
ACGTcount: A:0.13, C:0.01, G:0.01, T:0.84
Consensus pattern (10 bp):
TTTTTTTATA
Found at i:8598903 original size:19 final size:18
Alignment explanation
Indices: 8598844--8598907 Score: 78
Period size: 19 Copynumber: 3.6 Consensus size: 18
8598834 TCTCTCATTC
8598844 TTTTTTTTT-TTTTTTT-
1 TTTTTTTTTATTTTTTTA
*
8598860 TTTTTTTTTAAGTTTTTTA
1 TTTTTTTTT-ATTTTTTTA
8598879 TTTTTTTTTATTTTTTTCA
1 TTTTTTTTTATTTTTTT-A
*
8598898 TATTTTTTTA
1 TTTTTTTTTA
8598908 AATTTTGTAA
Statistics
Matches: 41, Mismatches: 3, Indels: 5
0.84 0.06 0.10
Matches are distributed among these distances:
16 9 0.22
18 13 0.32
19 19 0.46
ACGTcount: A:0.11, C:0.02, G:0.02, T:0.86
Consensus pattern (18 bp):
TTTTTTTTTATTTTTTTA
Found at i:8598906 original size:1 final size:1
Alignment explanation
Indices: 8598844--8598895 Score: 59
Period size: 1 Copynumber: 52.0 Consensus size: 1
8598834 TCTCTCATTC
*** * *
8598844 TTTTTTTTTTTTTTTTTTTTTTTTTAAGTTTTTTATTTTTTTTTATTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
8598896 CATATTTTTT
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
1 44 1.00
ACGTcount: A:0.08, C:0.00, G:0.02, T:0.90
Consensus pattern (1 bp):
T
Found at i:8598913 original size:9 final size:9
Alignment explanation
Indices: 8598863--8598945 Score: 51
Period size: 9 Copynumber: 9.0 Consensus size: 9
8598853 TTTTTTTTTT
*
8598863 TTTTTTAAG
1 TTTTTTAAA
**
8598872 TTTTTTATT
1 TTTTTTAAA
* *
8598881 TTTTTTTAT
1 TTTTTTAAA
*
8598890 TTTTTTCATAT
1 TTTTTT-A-AA
8598901 TTTTTTAAA
1 TTTTTTAAA
*
8598910 TTTTGTAAA
1 TTTTTTAAA
8598919 TATTTTTAAA
1 T-TTTTTAAA
**
8598929 -AATTTAAA
1 TTTTTTAAA
8598937 TTTTTTAAA
1 TTTTTTAAA
8598946 GTGCAATCCC
Statistics
Matches: 58, Mismatches: 12, Indels: 8
0.74 0.15 0.10
Matches are distributed among these distances:
8 6 0.10
9 36 0.62
10 8 0.14
11 8 0.14
ACGTcount: A:0.29, C:0.01, G:0.02, T:0.67
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:8598913 original size:19 final size:19
Alignment explanation
Indices: 8598862--8598913 Score: 59
Period size: 19 Copynumber: 2.7 Consensus size: 19
8598852 TTTTTTTTTT
* * *
8598862 TTTTTTTAAGTTTTTTATT
1 TTTTTTTAAATTTTTCATA
**
8598881 TTTTTTTATTTTTTTCATA
1 TTTTTTTAAATTTTTCATA
8598900 TTTTTTTAAATTTT
1 TTTTTTTAAATTTT
8598914 GTAAATATTT
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.17, C:0.02, G:0.02, T:0.79
Consensus pattern (19 bp):
TTTTTTTAAATTTTTCATA
Found at i:8599131 original size:14 final size:14
Alignment explanation
Indices: 8599107--8599154 Score: 53
Period size: 14 Copynumber: 3.4 Consensus size: 14
8599097 TTTATACCAT
8599107 TTTTTCTATTTTTAC
1 TTTTTC-ATTTTTAC
8599122 TTTTTCATTTTTACC
1 TTTTTCATTTTTA-C
* *
8599137 ATTTTC-TTTTTCC
1 TTTTTCATTTTTAC
8599150 TTTTT
1 TTTTT
8599155 GAAAATTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
13 5 0.17
14 12 0.41
15 12 0.41
ACGTcount: A:0.10, C:0.17, G:0.00, T:0.73
Consensus pattern (14 bp):
TTTTTCATTTTTAC
Found at i:8601526 original size:66 final size:67
Alignment explanation
Indices: 8601408--8601534 Score: 220
Period size: 66 Copynumber: 1.9 Consensus size: 67
8601398 TCATGATTAG
*
8601408 GTGTTAAAAATAATAAGATAAATCTCACATACACCTATTGTAGTATTCGACTTTCTCACTTGATC
1 GTGTTAAAAATAATAAGATAAATCTCACATACACCCATTGTAGTATTCGACTTTCTCACTTGATC
8601473 AA
66 AA
* *
8601475 GTGTTAAAAATAATAAGATAAATCT-TCATACACCCATTGTAGTATTCGACTTTCTTACTT
1 GTGTTAAAAATAATAAGATAAATCTCACATACACCCATTGTAGTATTCGACTTTCTCACTT
8601535 TTATGGGGAA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
66 32 0.56
67 25 0.44
ACGTcount: A:0.36, C:0.17, G:0.10, T:0.36
Consensus pattern (67 bp):
GTGTTAAAAATAATAAGATAAATCTCACATACACCCATTGTAGTATTCGACTTTCTCACTTGATC
AA
Found at i:8601821 original size:33 final size:35
Alignment explanation
Indices: 8601776--8601849 Score: 91
Period size: 34 Copynumber: 2.2 Consensus size: 35
8601766 GGCTTTAAGG
*
8601776 ATTCTC-GAATATT-ATTTTCGAAAAGGCTAAAAA
1 ATTCTCAGAATATTCATTTTCGAAAAGACTAAAAA
**
8601809 ATTCTCAG-ATATTCATTTTTTAAAAGACTAAAAA
1 ATTCTCAGAATATTCATTTTCGAAAAGACTAAAAA
*
8601843 GTTCTCA
1 ATTCTCA
8601850 AAAATGGATA
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
33 11 0.31
34 24 0.69
ACGTcount: A:0.41, C:0.14, G:0.09, T:0.36
Consensus pattern (35 bp):
ATTCTCAGAATATTCATTTTCGAAAAGACTAAAAA
Found at i:8604179 original size:30 final size:30
Alignment explanation
Indices: 8604133--8604194 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 30
8604123 TAATATAAAG
* *
8604133 TTTATTTAATTCTTAAACCAATATAAAATT
1 TTTACTTAATTCTTAAAACAATATAAAATT
* * *
8604163 TTTACTTAATTTTTAAAATAATATATAATT
1 TTTACTTAATTCTTAAAACAATATAAAATT
8604193 TT
1 TT
8604195 AACAAAATTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.42, C:0.06, G:0.00, T:0.52
Consensus pattern (30 bp):
TTTACTTAATTCTTAAAACAATATAAAATT
Found at i:8604270 original size:17 final size:18
Alignment explanation
Indices: 8604229--8604270 Score: 54
Period size: 17 Copynumber: 2.4 Consensus size: 18
8604219 CTTAATTTTA
8604229 ATTTT-TTAAAATATATT
1 ATTTTATTAAAATATATT
8604246 -TTTCTATTAAAA-ATATT
1 ATTT-TATTAAAATATATT
8604263 ATTTTATT
1 ATTTTATT
8604271 GATAAATTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 6
0.79 0.00 0.21
Matches are distributed among these distances:
16 3 0.14
17 10 0.45
18 9 0.41
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (18 bp):
ATTTTATTAAAATATATT
Found at i:8607735 original size:15 final size:15
Alignment explanation
Indices: 8607715--8607745 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8607705 ATTTTTGGGA
*
8607715 TTCTAGGTTTGAAGT
1 TTCTAGGTTTAAAGT
8607730 TTCTAGGTTTAAAGT
1 TTCTAGGTTTAAAGT
8607745 T
1 T
8607746 GAATTTCTAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.23, T:0.48
Consensus pattern (15 bp):
TTCTAGGTTTAAAGT
Found at i:8607754 original size:20 final size:20
Alignment explanation
Indices: 8607723--8607771 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
8607713 GATTCTAGGT
8607723 TTGAAGTTTCTAGGTTTAAAG
1 TTGAA-TTTCTAGGTTTAAAG
*
8607744 TTGAATTTCTAGGTTTGAAG
1 TTGAATTTCTAGGTTTAAAG
*
8607764 TTAAATTT
1 TTGAATTT
8607772 TTGGGTTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
20 21 0.81
21 5 0.19
ACGTcount: A:0.29, C:0.04, G:0.20, T:0.47
Consensus pattern (20 bp):
TTGAATTTCTAGGTTTAAAG
Found at i:8608160 original size:13 final size:13
Alignment explanation
Indices: 8608142--8608241 Score: 73
Period size: 12 Copynumber: 7.8 Consensus size: 13
8608132 CAATTGCAAG
8608142 TTTTTTTATTTTA
1 TTTTTTTATTTTA
*
8608155 -TTTTTTAATTTA
1 TTTTTTTATTTTA
*
8608167 TATTTTTA-TTTA
1 TTTTTTTATTTTA
*
8608179 TTTTATTTATATATA
1 TTTT-TTTAT-TTTA
8608194 TTTTTTCTATTTT-
1 TTTTTT-TATTTTA
* * *
8608207 CTATTTCATTTTA
1 TTTTTTTATTTTA
* *
8608220 CTTTTTT-TTATA
1 TTTTTTTATTTTA
8608232 TTTTTTTATT
1 TTTTTTTATT
8608242 CTACTTGTTT
Statistics
Matches: 68, Mismatches: 12, Indels: 14
0.72 0.13 0.15
Matches are distributed among these distances:
12 33 0.49
13 21 0.31
14 4 0.06
15 10 0.15
ACGTcount: A:0.20, C:0.04, G:0.00, T:0.76
Consensus pattern (13 bp):
TTTTTTTATTTTA
Found at i:8608172 original size:25 final size:25
Alignment explanation
Indices: 8608144--8608206 Score: 76
Period size: 25 Copynumber: 2.6 Consensus size: 25
8608134 ATTGCAAGTT
*
8608144 TTTTTATTTTATTTT-TTAATTTATA
1 TTTTTA-TTTATTTTATTAATATATA
*
8608169 TTTTTATTTATTTTATTTATATATA
1 TTTTTATTTATTTTATTAATATATA
*
8608194 TTTTT-TCTATTTT
1 TTTTTATTTATTTT
8608207 CTATTTCATT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
24 15 0.44
25 19 0.56
ACGTcount: A:0.22, C:0.02, G:0.00, T:0.76
Consensus pattern (25 bp):
TTTTTATTTATTTTATTAATATATA
Found at i:8608188 original size:21 final size:20
Alignment explanation
Indices: 8608150--8608190 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
8608140 AGTTTTTTTA
8608150 TTTTATTTTTTAATTTATAT
1 TTTTATTTTTTAATTTATAT
*
8608170 TTTTATTTATTTTATTTATAT
1 TTTTATTT-TTTAATTTATAT
8608191 ATATTTTTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 8 0.42
21 11 0.58
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (20 bp):
TTTTATTTTTTAATTTATAT
Found at i:8613152 original size:8 final size:8
Alignment explanation
Indices: 8613139--8613179 Score: 57
Period size: 8 Copynumber: 5.2 Consensus size: 8
8613129 TTTTTATTTA
8613139 TATATATT
1 TATATATT
*
8613147 TATATAAT
1 TATATATT
8613155 TATATATT
1 TATATATT
*
8613163 TAAATATT
1 TATATATT
8613171 T-TATATT
1 TATATATT
8613178 TA
1 TA
8613180 AAAAATAATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
7 6 0.21
8 22 0.79
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (8 bp):
TATATATT
Found at i:8613177 original size:15 final size:16
Alignment explanation
Indices: 8613139--8613194 Score: 62
Period size: 15 Copynumber: 3.6 Consensus size: 16
8613129 TTTTTATTTA
*
8613139 TATATATTTATATAAT
1 TATATATTTAAATAAT
8613155 TATATATTTAAAT-AT
1 TATATATTTAAATAAT
* *
8613170 TTTATATTTAAAAAAT
1 TATATATTTAAATAAT
*
8613186 AATAT-TTTA
1 TATATATTTA
8613195 TATTTAAAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
15 17 0.50
16 17 0.50
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (16 bp):
TATATATTTAAATAAT
Found at i:8613217 original size:19 final size:21
Alignment explanation
Indices: 8613165--8613216 Score: 104
Period size: 21 Copynumber: 2.5 Consensus size: 21
8613155 TATATATTTA
8613165 AATATTTTATATTTAAAAAAT
1 AATATTTTATATTTAAAAAAT
8613186 AATATTTTATATTTAAAAAAT
1 AATATTTTATATTTAAAAAAT
8613207 AATATTTTAT
1 AATATTTTAT
8613217 TAATTTCAGG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 31 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (21 bp):
AATATTTTATATTTAAAAAAT
Found at i:8624320 original size:17 final size:17
Alignment explanation
Indices: 8624300--8624350 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
8624290 TTACATTTTC
8624300 ATTTATTTTATTTTTAT
1 ATTTATTTTATTTTTAT
*
8624317 ATTTTTTTTTATTTTCTAT
1 A-TTTATTTTATTTT-TAT
*
8624336 -TTCATTTTACTTTTT
1 ATTTATTTTA-TTTTT
8624351 TTAAGATTTT
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
17 9 0.32
18 16 0.57
19 3 0.11
ACGTcount: A:0.18, C:0.06, G:0.00, T:0.76
Consensus pattern (17 bp):
ATTTATTTTATTTTTAT
Found at i:8625681 original size:6 final size:6
Alignment explanation
Indices: 8625670--8625712 Score: 54
Period size: 6 Copynumber: 7.5 Consensus size: 6
8625660 TATTCCTTAA
* *
8625670 TTTATT TTTATT TTTATT TTTA-T TTTATG TTT-TT TTTCTT TTT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTT
8625713 TTTCAATGAT
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
5 9 0.27
6 24 0.73
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.84
Consensus pattern (6 bp):
TTTATT
Found at i:8625685 original size:12 final size:12
Alignment explanation
Indices: 8625670--8625712 Score: 54
Period size: 11 Copynumber: 3.8 Consensus size: 12
8625660 TATTCCTTAA
8625670 TTTATTTTTATT
1 TTTATTTTTATT
8625682 TTTATTTTTA-T
1 TTTATTTTTATT
*
8625693 TTTATGTTT-TT
1 TTTATTTTTATT
*
8625704 TTTCTTTTT
1 TTTATTTTT
8625713 TTTCAATGAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
11 17 0.63
12 10 0.37
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.84
Consensus pattern (12 bp):
TTTATTTTTATT
Found at i:8625713 original size:23 final size:23
Alignment explanation
Indices: 8625670--8625712 Score: 61
Period size: 22 Copynumber: 1.9 Consensus size: 23
8625660 TATTCCTTAA
8625670 TTTATTTTTATTTTTATTTTTAT
1 TTTATTTTTATTTTTATTTTTAT
* *
8625693 TTTATGTTT-TTTTTCTTTTT
1 TTTATTTTTATTTTTATTTTT
8625713 TTTCAATGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 10 0.56
23 8 0.44
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.84
Consensus pattern (23 bp):
TTTATTTTTATTTTTATTTTTAT
Found at i:8626086 original size:135 final size:135
Alignment explanation
Indices: 8625876--8626239 Score: 424
Period size: 135 Copynumber: 2.7 Consensus size: 135
8625866 ATTTTTTGGA
* *
8625876 AAAAGTTAAAAGTATCAATTTTCCTATAAAATAAAAAAGGGTTT-AAAAA-A-ATATTTTTAGGA
1 AAAAGTTGAAAGTATCAATTTTCTTA-AAAATAAAAAA--GTTTAAAAAATATATATTTTTAGGA
* *
8625938 AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCTAAAATAAAAATT-TC-CATAAGCA
63 AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCTAAAATAAAAATTATCAAAAAAGCA
*
8626001 TTTTAGGG
128 TTTTAAGG
*
8626009 GAAAGTTGAAAGTATCAATTTCTCTTAAAAATAAAAAAGTTTTAAAAAATATATATTTTTAGGAA
1 AAAAGTTGAAAGTATCAATTT-TCTTAAAAATAAAAAAG-TTTAAAAAATATATATTTTTAGGAA
* * *
8626074 AAAGTTGAAAGTATCAATTTCTT-TTTAAAATAAAATTTTTAAAATAAAAATTATCAAAAAAGTA
64 AAAGTTGAAAGTATCAATTT-TTCTTAAAAATAAAATTTCTAAAATAAAAATTATCAAAAAAGCA
8626138 TTTTAAGG
128 TTTTAAGG
* * *** * * *
8626146 AAAAGTTGAAAATATCAATTTTATTTTCAAT-TAAAA--TTAAAATATATATA-TTTTGGGAAAA
1 AAAAGTTGAAAGTATCAATTTTCTTAAAAATAAAAAAGTTTAAAAAATATATATTTTTAGGAAAA
* * *
8626207 AGTTGGAAGTGTCAATTTTCCTTAAAAATAAAA
66 AGTTGAAAGTATCAATTTTTCTTAAAAATAAAA
8626240 ATTATCAAGA
Statistics
Matches: 200, Mismatches: 22, Indels: 20
0.83 0.09 0.08
Matches are distributed among these distances:
130 1 0.00
131 38 0.19
132 16 0.08
133 35 0.17
134 5 0.03
135 64 0.32
136 10 0.05
137 31 0.16
ACGTcount: A:0.49, C:0.05, G:0.10, T:0.36
Consensus pattern (135 bp):
AAAAGTTGAAAGTATCAATTTTCTTAAAAATAAAAAAGTTTAAAAAATATATATTTTTAGGAAAA
AGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTCTAAAATAAAAATTATCAAAAAAGCATTT
TAAGG
Found at i:8626125 original size:15 final size:14
Alignment explanation
Indices: 8626095--8626122 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
8626085 TATCAATTTC
8626095 TTTTTAAAATAAAA
1 TTTTTAAAATAAAA
8626109 TTTTTAAAATAAAA
1 TTTTTAAAATAAAA
8626123 ATTATCAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (14 bp):
TTTTTAAAATAAAA
Found at i:8626182 original size:58 final size:56
Alignment explanation
Indices: 8626109--8626289 Score: 161
Period size: 58 Copynumber: 3.1 Consensus size: 56
8626099 TAAAATAAAA
* *
8626109 TTTTTAAAATAAAAATTATCAAAAAAGTATTTTAAGGAAAAGTTGAAAATATCAATT
1 TTTTTTAAATAAAAATTATCAAAAAA-TATTTTAAGGAAAAGTTGAAAGTATCAATT
* * * * *
8626166 TTATTTTCAATTAAAATTA--AAATATATATATTTT-GGGAAAAAGTTGGAAGTGTCAATT
1 TT-TTTTAAATAAAAATTATCAAA-A-A-ATATTTTAAGG-AAAAGTTGAAAGTATCAATT
** *
8626224 TTCCTTAAAAATAAAAATTATCAAGAAAAACATTTTAAGGAAAAGTTGAAAGTATCAATT
1 TT--TTTTAAATAAAAATTATC-A-AAAAATATTTTAAGGAAAAGTTGAAAGTATCAATT
8626284 TTTTTT
1 TTTTTT
8626290 GTACAAAAGC
Statistics
Matches: 95, Mismatches: 18, Indels: 21
0.71 0.13 0.16
Matches are distributed among these distances:
56 3 0.03
57 5 0.05
58 41 0.43
59 13 0.14
60 26 0.27
61 3 0.03
62 2 0.02
63 2 0.02
ACGTcount: A:0.47, C:0.05, G:0.10, T:0.38
Consensus pattern (56 bp):
TTTTTTAAATAAAAATTATCAAAAAATATTTTAAGGAAAAGTTGAAAGTATCAATT
Found at i:8629529 original size:15 final size:14
Alignment explanation
Indices: 8629499--8629537 Score: 51
Period size: 15 Copynumber: 2.7 Consensus size: 14
8629489 GTAAATGTTC
*
8629499 TTTTCATGCATGCA
1 TTTTCATTCATGCA
8629513 TTTTCATTCACTGCA
1 TTTTCATTCA-TGCA
*
8629528 TTCTCATTCA
1 TTTTCATTCA
8629538 ATACATTTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.21, C:0.26, G:0.08, T:0.46
Consensus pattern (14 bp):
TTTTCATTCATGCA
Found at i:8636334 original size:9 final size:9
Alignment explanation
Indices: 8636320--8636357 Score: 51
Period size: 9 Copynumber: 4.3 Consensus size: 9
8636310 TATTATGCTT
8636320 AAAAAATAA
1 AAAAAATAA
8636329 AAAAAAT-A
1 AAAAAATAA
*
8636337 AAAAACTAA
1 AAAAAATAA
*
8636346 GAAAAATAA
1 AAAAAATAA
8636355 AAA
1 AAA
8636358 GAAAGACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
8 7 0.29
9 17 0.71
ACGTcount: A:0.84, C:0.03, G:0.03, T:0.11
Consensus pattern (9 bp):
AAAAAATAA
Found at i:8636350 original size:17 final size:16
Alignment explanation
Indices: 8636319--8636357 Score: 60
Period size: 17 Copynumber: 2.4 Consensus size: 16
8636309 GTATTATGCT
8636319 TAAAAAATAAAAAAAA
1 TAAAAAATAAAAAAAA
*
8636335 TAAAAAACTAAGAAAAA
1 TAAAAAA-TAAAAAAAA
8636352 TAAAAA
1 TAAAAA
8636358 GAAAGACTCA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
16 7 0.33
17 14 0.67
ACGTcount: A:0.82, C:0.03, G:0.03, T:0.13
Consensus pattern (16 bp):
TAAAAAATAAAAAAAA
Found at i:8637374 original size:44 final size:44
Alignment explanation
Indices: 8637303--8637540 Score: 275
Period size: 44 Copynumber: 5.3 Consensus size: 44
8637293 ATTGTCAAAA
* * *
8637303 AGCTTTGTTTATTTTTTTTAAAAGTCGTTGAACCTCTTATTAGAGG
1 AGCTTTG-TTA-TTTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
8637349 AGCTTTGTTATTTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
1 AGCTTTGTTATTTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
* *
8637393 AGCTTTGTTTATTTTTTTCAAAGTCGTTGAGCCTCTAATTAGAAG
1 AGCTTTG-TTATTTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
* * * *
8637438 AGCTTTGTT-TATTTTTCCAAAGTCGTCGAACCTCTGATTAGAAG
1 AGCTTTGTTAT-TTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
* * *
8637482 AGCTTTGTT-TATTTTTCAAAAGTCATTGAGCCTCT-ATTTAAAGG
1 AGCTTTGTTATTTTTTTC-AAAGTCGTTGAGCCTCTGA-TTAGAGG
*
8637526 AGCTTTATTTATTTT
1 AGCTTT-GTTATTTT
8637541 CTAAAGTTGT
Statistics
Matches: 168, Mismatches: 18, Indels: 12
0.85 0.09 0.06
Matches are distributed among these distances:
43 7 0.04
44 104 0.62
45 47 0.28
46 10 0.06
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.45
Consensus pattern (44 bp):
AGCTTTGTTATTTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
Found at i:8637459 original size:89 final size:89
Alignment explanation
Indices: 8637303--8637540 Score: 313
Period size: 89 Copynumber: 2.7 Consensus size: 89
8637293 ATTGTCAAAA
* * * * *
8637303 AGCTTTGTTTATTTTTTTTAAAAGTCGTTGAACCTCTTATTAGAGGAGCTTTG-TTATTTTTTTC
1 AGCTTTGTTTA-TTTTTTTCAAAGTCGTTGAGCCTCTAATTAGAAGAGCTTTGTTTA-TTTTTCC
* * *
8637367 AAAGTCGTTGAGCCTCTGATTAGAGG
64 AAAGTCGTCGAACCTCTGATTAGAAG
8637393 AGCTTTGTTTATTTTTTTCAAAGTCGTTGAGCCTCTAATTAGAAGAGCTTTGTTTATTTTTCCAA
1 AGCTTTGTTTATTTTTTTCAAAGTCGTTGAGCCTCTAATTAGAAGAGCTTTGTTTATTTTTCCAA
8637458 AGTCGTCGAACCTCTGATTAGAAG
66 AGTCGTCGAACCTCTGATTAGAAG
* * *
8637482 AGCTTTGTTTA--TTTTTCAAAAGTCATTGAGCCTCTATTTA-AAGGAGCTTTATTTATTTT
1 AGCTTTGTTTATTTTTTTC-AAAGTCGTTGAGCCTCTAATTAGAA-GAGCTTTGTTTATTTT
8637541 CTAAAGTTGT
Statistics
Matches: 134, Mismatches: 11, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
87 8 0.06
88 35 0.26
89 77 0.57
90 14 0.10
ACGTcount: A:0.24, C:0.13, G:0.18, T:0.45
Consensus pattern (89 bp):
AGCTTTGTTTATTTTTTTCAAAGTCGTTGAGCCTCTAATTAGAAGAGCTTTGTTTATTTTTCCAA
AGTCGTCGAACCTCTGATTAGAAG
Found at i:8637547 original size:43 final size:43
Alignment explanation
Indices: 8637303--8637581 Score: 269
Period size: 44 Copynumber: 6.3 Consensus size: 43
8637293 ATTGTCAAAA
* * *
8637303 AGCTTTGTTTATTTTTTTTAAAAGTCGTTGAACCTCTTATTAGAGG
1 AGCTTTGTTTA-TTTTTCT-AAAGTCGTTGAGCCTC-TATTAAAGG
* *
8637349 AGCTTTG-TTATTTTTTTCAAAGTCGTTGAGCCTCTGATTAGAGG
1 AGCTTTGTTTATTTTTCT-AAAGTCGTTGAGCCTCT-ATTAAAGG
*
8637393 AGCTTTGTTTATTTTTTTCAAAGTCGTTGAGCCTCTAATTAGAA-G
1 AGCTTTGTTTATTTTTCT-AAAGTCGTTGAGCCTCT-ATTA-AAGG
* * *
8637438 AGCTTTGTTTATTTTTCCAAAGTCGTCGAACCTCTGATTAGAA-G
1 AGCTTTGTTTATTTTTCTAAAGTCGTTGAGCCTCT-ATTA-AAGG
* *
8637482 AGCTTTGTTTATTTTTCAAAAGTCATTGAGCCTCTATTTAAAGG
1 AGCTTTGTTTATTTTTCTAAAGTCGTTGAGCCTCTA-TTAAAGG
* * * * *
8637526 AGCTTTATTTA-TTTTCTAAAGTTGTTAAGCTTCTATTTAAAGA
1 AGCTTTGTTTATTTTTCTAAAGTCGTTGAGCCTCTA-TTAAAGG
*
8637569 AGTTTTGTTTATT
1 AGCTTTGTTTATT
8637582 CTTCAAAAAG
Statistics
Matches: 205, Mismatches: 22, Indels: 14
0.85 0.09 0.06
Matches are distributed among these distances:
43 39 0.19
44 106 0.52
45 52 0.25
46 8 0.04
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.46
Consensus pattern (43 bp):
AGCTTTGTTTATTTTTCTAAAGTCGTTGAGCCTCTATTAAAGG
Found at i:8637570 original size:133 final size:134
Alignment explanation
Indices: 8637303--8637589 Score: 345
Period size: 133 Copynumber: 2.2 Consensus size: 134
8637293 ATTGTCAAAA
* * * * *
8637303 AGCTTTGTTTATTTTTTTTAAAAGTCGTTGAACCTCTTATTAGAGGAGCTTTGTTATTTTTTTCA
1 AGCTTTGTTTA-TTTTTTCAAAAGTCGTCGAACCTCTGATTAGAAGAGCTTTGTTATATTTTTCA
* * * * *
8637368 AAGTCGTTGAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTTTCAAAGTCGTTGAGCCTCTAATT
65 AAGTCATTGAGCCTCTGATTAAAGGAGCTTTATTTATTTTTCTCAAAGTCGTTAAGCCTCTAATT
8637433 AGAAG
130 AGAAG
*
8637438 AGCTTTGTTTA-TTTTTCCAAAGTCGTCGAACCTCTGATTAGAAGAGCTTTGTT-TATTTTTCAA
1 AGCTTTGTTTATTTTTTCAAAAGTCGTCGAACCTCTGATTAGAAGAGCTTTGTTATATTTTTC-A
* * *
8637501 AAGTCATTGAGCCTCT-ATTTAAAGGAGCTTTATTTA-TTTTCT-AAAGTTGTTAAGCTTCTATT
65 AAGTCATTGAGCCTCTGA-TTAAAGGAGCTTTATTTATTTTTCTCAAAGTCGTTAAGCCTCTAAT
8637563 TA-AAG
129 TAGAAG
* *
8637568 AAGTTTTGTTTA-TTCTTCAAAA
1 -AGCTTTGTTTATTTTTTCAAAA
8637590 AGTTATGAAT
Statistics
Matches: 132, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
130 3 0.02
131 36 0.27
132 13 0.10
133 69 0.52
135 11 0.08
ACGTcount: A:0.25, C:0.13, G:0.17, T:0.45
Consensus pattern (134 bp):
AGCTTTGTTTATTTTTTCAAAAGTCGTCGAACCTCTGATTAGAAGAGCTTTGTTATATTTTTCAA
AGTCATTGAGCCTCTGATTAAAGGAGCTTTATTTATTTTTCTCAAAGTCGTTAAGCCTCTAATTA
GAAG
Found at i:8638621 original size:4 final size:4
Alignment explanation
Indices: 8638614--8638640 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
8638604 TTTTTTTTTC
8638614 ATTT ATTT ATTT ATTT ATTT ATTT ATT
1 ATTT ATTT ATTT ATTT ATTT ATTT ATT
8638641 ATTATTATTG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.00, T:0.74
Consensus pattern (4 bp):
ATTT
Found at i:8638965 original size:71 final size:70
Alignment explanation
Indices: 8638879--8639128 Score: 269
Period size: 71 Copynumber: 3.5 Consensus size: 70
8638869 ATTTTTAGAG
* *
8638879 AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTTAAAATAAAAATTTCCAAAAGCATT
1 AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAA-TTTTAAAATAAAAATTTCAAAAAGTATT
8638944 TTGGGA
65 TTGGGA
* * ** * *
8638950 AAAAATTGAAAGTATCAATTTTTCTTAAAAAT-AAA---GAAAATAATAGGGTTTAAAAAAATAT
1 AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTAAAATAA-A-AATTTCAAAAAGTA-
*
8639011 TTTTAGGA
63 TTTTGGGA
8639019 AAAAGTTGAAAGTATCAATTTTT-TTAAAAATAAAATTTCTAAAATAAAAATTATCAAAAAAGTA
1 AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTT-TAAAATAAAAATT-TC-AAAAAGTA
8639083 TTTTGAGG-
63 TTTTG-GGA
* * * *
8639091 AAAAGTTAAAAATATCAATTTTTCTTGAAATTAAAATT
1 AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATT
8639129 AAAAAAAATA
Statistics
Matches: 147, Mismatches: 20, Indels: 22
0.78 0.11 0.12
Matches are distributed among these distances:
66 7 0.05
67 1 0.01
68 16 0.11
69 32 0.22
70 3 0.02
71 33 0.22
72 27 0.18
73 28 0.19
ACGTcount: A:0.50, C:0.05, G:0.10, T:0.35
Consensus pattern (70 bp):
AAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTAAAATAAAAATTTCAAAAAGTATTT
TGGGA
Found at i:8639023 original size:140 final size:143
Alignment explanation
Indices: 8638858--8639125 Score: 395
Period size: 141 Copynumber: 1.9 Consensus size: 143
8638848 AACACAAAAA
*
8638858 TAAAAATATATATTTTTAGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAAATTTTTAAA
1 TAAAAATATATATTTTTAGAGAAAAGTTGAAAGTATCAATTTTT-TTAAAAATAAAATTTCTAAA
* * *
8638923 ATAAAAATT-TC-CAAAAGCATTTTG-GGAAAAAATTGAAAGTATCAATTTTTCTTAAAAATAAA
65 ATAAAAATTATCAAAAAAGCATTTTGAGG-AAAAATTAAAAATATCAATTTTTCTTAAAAATAAA
8638985 GAAAATAATAGGGTT
129 GAAAATAATAGGGTT
8639000 TAAAAA-A-ATATTTTTAG-GAAAAAGTTGAAAGTATCAATTTTTTTAAAAATAAAATTTCTAAA
1 TAAAAATATATATTTTTAGAG-AAAAGTTGAAAGTATCAATTTTTTTAAAAATAAAATTTCTAAA
* * * *
8639062 ATAAAAATTATCAAAAAAGTATTTTGAGGAAAAGTTAAAAATATCAATTTTTCTTGAAATTAAA
65 ATAAAAATTATCAAAAAAGCATTTTGAGGAAAAATTAAAAATATCAATTTTTCTTAAAAATAAA
8639126 ATTAAAAAAA
Statistics
Matches: 114, Mismatches: 8, Indels: 9
0.87 0.06 0.07
Matches are distributed among these distances:
139 29 0.25
140 35 0.31
141 42 0.37
142 8 0.07
ACGTcount: A:0.50, C:0.04, G:0.10, T:0.35
Consensus pattern (143 bp):
TAAAAATATATATTTTTAGAGAAAAGTTGAAAGTATCAATTTTTTTAAAAATAAAATTTCTAAAA
TAAAAATTATCAAAAAAGCATTTTGAGGAAAAATTAAAAATATCAATTTTTCTTAAAAATAAAGA
AAATAATAGGGTT
Found at i:8639144 original size:56 final size:58
Alignment explanation
Indices: 8639059--8639287 Score: 227
Period size: 56 Copynumber: 4.0 Consensus size: 58
8639049 TAAAATTTCT
* * *
8639059 AAAATAAAAATTATCAAAAAAGTATTTTGAGGAAAAGTTAAAAATATCAATTTTTCTT-
1 AAAATAAAAATTA-CAAAAAAATATTTTGAGAAAAAGTTAAAAGTATCAATTTTTCTTA
* * ** *
8639117 GAAATTAAAATTA-AAAAAAATATTTTGAGAAAAAGTTGGAAGTAGCAATTTTTCTTA
1 AAAATAAAAATTACAAAAAAATATTTTGAGAAAAAGTTAAAAGTATCAATTTTTCTTA
* * * *
8639174 AAAATAAAAATTATCAAGAAAAACATTTTAAGAAAAAATTAAAAGTATCAATTTTT-TTT
1 AAAATAAAAATTA-CAA-AAAAATATTTTGAGAAAAAGTTAAAAGTATCAATTTTTCTTA
* ** ** *
8639233 AAAATAAAAACT-C--TCAAATGCTTTAAGAAAAAGTTAAAAGTATCAATTTTTCTTA
1 AAAATAAAAATTACAAAAAAATATTTTGAGAAAAAGTTAAAAGTATCAATTTTTCTTA
8639288 TATAAAATCA
Statistics
Matches: 141, Mismatches: 25, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
54 32 0.23
55 2 0.01
56 37 0.26
57 12 0.09
58 11 0.08
59 15 0.11
60 32 0.23
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.34
Consensus pattern (58 bp):
AAAATAAAAATTACAAAAAAATATTTTGAGAAAAAGTTAAAAGTATCAATTTTTCTTA
Found at i:8639282 original size:114 final size:114
Alignment explanation
Indices: 8639059--8639287 Score: 262
Period size: 116 Copynumber: 2.0 Consensus size: 114
8639049 TAAAATTTCT
** * * * * *
8639059 AAAATAAAAATTATCAAAAAAGTATTTTGAGGAAAAGTTAAAAATATCAATTTTTCTTGAAATTA
1 AAAATAAAAATTATCAAAAAAACATTTTAAGAAAAAATTAAAAATATCAATTTTTCTTAAAATAA
* * * **
8639124 AAATTAAAAAAAATATTTTGAGAAAAAGTTGGAAGTAGCAATTTTTCTTA
66 AAACT-AAAAAAATACTTTAAGAAAAAGTTAAAAGTAGCAATTTTTCTTA
* *
8639174 AAAATAAAAATTATCAAGAAAAACATTTTAAGAAAAAATTAAAAGTATCAATTTTTTTTAAAATA
1 AAAATAAAAATTATCAA-AAAAACATTTTAAGAAAAAATTAAAAATATCAATTTTTCTTAAAATA
*** * *
8639239 AAAACT-CTCAAATGCTTTAAGAAAAAGTTAAAAGTATCAATTTTTCTTA
65 AAAACTAAAAAAATACTTTAAGAAAAAGTTAAAAGTAGCAATTTTTCTTA
8639288 TATAAAATCA
Statistics
Matches: 94, Mismatches: 19, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
114 34 0.36
115 17 0.18
116 43 0.46
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.34
Consensus pattern (114 bp):
AAAATAAAAATTATCAAAAAAACATTTTAAGAAAAAATTAAAAATATCAATTTTTCTTAAAATAA
AAACTAAAAAAATACTTTAAGAAAAAGTTAAAAGTAGCAATTTTTCTTA
Found at i:8641297 original size:21 final size:21
Alignment explanation
Indices: 8641271--8641312 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
8641261 TTCATTTTCA
8641271 TTTGGGTGCATAATCACCTCT
1 TTTGGGTGCATAATCACCTCT
8641292 TTTGGGTGCATAATCACCTCT
1 TTTGGGTGCATAATCACCTCT
8641313 CTGAGTTTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.19, C:0.24, G:0.19, T:0.38
Consensus pattern (21 bp):
TTTGGGTGCATAATCACCTCT
Found at i:8642447 original size:144 final size:143
Alignment explanation
Indices: 8641736--8643148 Score: 1647
Period size: 144 Copynumber: 10.0 Consensus size: 143
8641726 TAAATTCAAC
* * * * *
8641736 AAAGCCAAATCAAAAGGTTTAATCATATTAATAACTGGA-CATCTTATTGTTAAATTTTTACATT
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATC-TGTTGTTAAACTTTTACATC
* * * *
8641800 TTTATGTATTTTCATTAAATTGTGGTGTCTTTCGATGAGTTCTCTTTCGGTTTTGTTTCTT-CTT
65 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTT-TTCCTT
*
8641864 TATCTTTCATATGTA
129 TATCTTTCATATGCA
* * * * *
8641879 AAAGTCAAATCAAGAGATTTAATCATTTTAATAATTGGATCATCTAATTGTTAAACTTTTACATC
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCT-GTTGTTAAACTTTTACATC
* * *
8641944 TTTATATATTTTCATTAAATTGTAGTGTCCTCCAAT-A------TTTCGGCTTTGTTTTTCTTTT
65 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTTT
8642002 ATCTTTCATATGCA
130 ATCTTTCATATGCA
* * * *
8642016 AAAATCAAATCAAGAGGTTTAATCATATTAATAACTGGACTATTTGATTATTAAACTTTTACATC
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTG-TTGTTAAACTTTTACATC
* ** * * * * *
8642081 TTTATGTATTTTTATTAAATTGTGACGTCCTCTAATGAGTTATCTTTCAGCTTTGTTTCTCTTTT
65 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTTT
*
8642146 AT-TTTCATACGCA
130 ATCTTTCATATGCA
* * * * *
8642159 AAAATCAAATCAAGAGGTTTAATTATATTAATAACTGGACCATCTGGTTGTTAAACCTATACATT
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCT-GTTGTTAAACTTTTACATC
* *
8642224 TTTATGT-TTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCT-TTTCCGACTTTGCTTGTT-CT
65 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTT-CGGCTTTG-TTTTTCCT
8642286 TTATCTTTCATATGCA
128 TTATCTTTCATATGCA
* * *
8642302 AAAGTCAAATCAGGATGTTTAATCATATTAACAACTGGACCATCTAGTTGTTAAACTTTTACATC
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCT-GTTGTTAAACTTTTACATC
* *
8642367 TTTATATATTTTCATTAAATTGTGGTGTCCACCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTTT
65 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTTT
8642432 ATCTTTCATATGCA
130 ATCTTTCATATGCA
*
8642446 AAAGTCAAATCAGGAGGTTTAATCATATTAATAACTGGACCATCTGATTGTTAAACTTTTACATC
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTG-TTGTTAAACTTTTACATC
* * * * *
8642511 TTTATGTGTTCTCATTAAATTGTGGTGTCC-CCAATGAG--CTCTTACAGCTTTGTTTCTCCTTT
65 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTTT
*
8642573 ATCTTTCATATACA
130 ATCTTTCATATGCA
*
8642587 AAAGTCAAATCAGGAGGTTTAATCATATTAATAACTGGACCATCTGGTTGTTAAACTTTTACATC
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCT-GTTGTTAAACTTTTACATC
* * * * *
8642652 TTTACGTATTTTCATTAAATTGTGGTGTCCTCTAATTAGTTCTCTTTTGGCTTTGTTTCTT-TTT
65 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTT-TTCCTT
*
8642716 TATCTTTCATGTGCA
129 TATCTTTCATATGCA
* *
8642731 AAAGTCAAATCAAGAGATTTAATCATATTAATAACTGGACCATATGGTTGTTAAACTTTTACATC
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCT-GTTGTTAAACTTTTACATC
* * * * * * *
8642796 TTTATGTATTTTCATTAAATTGCGATGTCCTCTAATAAGTTCTCTTTCGACTTTGTTTCTCTTTT
65 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTTT
8642861 ATCTTTCATATGCA
130 ATCTTTCATATGCA
* * * *
8642875 AAAGTCAAATCAAAAAGTTTAATCATATTAATAACTGAACCATCTGATTGTTAAACTTTTATATC
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTG-TTGTTAAACTTTTACATC
* * * * * * * * * ** * *
8642940 TTTATATATTTTTATTAAATTGCGATATCCTCCTATGAGTTCCCTTCCGACTTTGTTTCCCCATC
65 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTTT
*
8643005 ATCTTTCACATGCA
130 ATCTTTCATATGCA
* * ** * *
8643019 AATGTCAAATCAAAAAATTTAATCATATTAATAACTGAACTATCTG-T-TT--A----T--ATCT
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGTTGTTAAACTTTTACATCT
* * * * * *
8643074 TTATATACTTTCATTAAATTCTGGTGTCCTCCTATGAGTTCTCTTTCGGCTTTGATTGTCCTTTA
66 TTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTTTA
*
8643139 TTTTTCATAT
131 TCTTTCATAT
8643149 ACAATTATAT
Statistics
Matches: 1110, Mismatches: 134, Indels: 62
0.85 0.10 0.05
Matches are distributed among these distances:
133 63 0.06
135 1 0.00
136 2 0.00
137 114 0.10
138 1 0.00
139 1 0.00
141 129 0.12
142 49 0.04
143 199 0.18
144 547 0.49
145 4 0.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (143 bp):
AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGTTGTTAAACTTTTACATCT
TTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTTTA
TCTTTCATATGCA
Found at i:8642643 original size:285 final size:286
Alignment explanation
Indices: 8641736--8643148 Score: 1668
Period size: 285 Copynumber: 5.0 Consensus size: 286
8641726 TAAATTCAAC
* * * * *
8641736 AAAGCCAAATCAAAAGGTTTAATCATATTAATAACTGGA-CATCTTATTGTTAAATTTTTACATT
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGATTGTTAAACTTTTACATC
* * * *
8641800 TTTATGTATTTTCATTAAATTGTGGTGTCTTTCGATGAGTTCTCTTTCGGTTTTGTTTCTT-CTT
66 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTT-TTCCTT
* * * * *
8641864 TATCTTTCATATGTAAAAGTCAAATCAAGAGATTTAATCATTTTAATAATTGGATCATCTAATTG
130 TATCTTTCATATGCAAAAGTCAAATCAAGAGATTTAATCATATTAATAACTGGACCATCTGATTG
* * *
8641929 TTAAACTTTTACATCTTTATATATTTTCATTAAATTGTAGTGTCCTCCAAT-A----TTTCGGCT
195 TTAAACTTTTACATCTTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGCTCTTTCGACT
* *
8641989 TTGTTTTTCTTTTATCTTTCATATGCA
260 TTGTTTCTCCTTTATCTTTCATATGCA
* * * *
8642016 AAAATCAAATCAAGAGGTTTAATCATATTAATAACTGGACTATTTGATTATTAAACTTTTACATC
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGATTGTTAAACTTTTACATC
* ** * * * * *
8642081 TTTATGTATTTTTATTAAATTGTGACGTCCTCTAATGAGTTATCTTTCAGCTTTGTTTCTCTTTT
66 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTTT
* * * * *
8642146 AT-TTTCATACGCAAAAATCAAATCAAGAGGTTTAATTATATTAATAACTGGACCATCTGGTTGT
131 ATCTTTCATATGCAAAAGTCAAATCAAGAGATTTAATCATATTAATAACTGGACCATCTGATTGT
* * * *
8642210 TAAACCTATACATTTTTATGT-TTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTTTTCCGAC
196 TAAACTTTTACATCTTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGCTC-TTT-CGAC
* * *
8642274 TTTGCTTGTTCTTTATCTTTCATATGCA
259 TTTGTTTCTCCTTTATCTTTCATATGCA
* * *
8642302 AAAGTCAAATCAGGATGTTTAATCATATTAACAACTGGACCATCT-AGTTGTTAAACTTTTACAT
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGA-TTGTTAAACTTTTACAT
* *
8642366 CTTTATATATTTTCATTAAATTGTGGTGTCCACCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTT
65 CTTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTT
* *
8642431 TATCTTTCATATGCAAAAGTCAAATCAGGAGGTTTAATCATATTAATAACTGGACCATCTGATTG
130 TATCTTTCATATGCAAAAGTCAAATCAAGAGATTTAATCATATTAATAACTGGACCATCTGATTG
* * *
8642496 TTAAACTTTTACATCTTTATGTGTTCTCATTAAATTGTGGTGTCC-CCAATGAGCTCTTAC-AGC
195 TTAAACTTTTACATCTTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGCTCTTTCGA-C
*
8642559 TTTGTTTCTCCTTTATCTTTCATATACA
259 TTTGTTTCTCCTTTATCTTTCATATGCA
* *
8642587 AAAGTCAAATCAGGAGGTTTAATCATATTAATAACTGGACCATCTGGTTGTTAAACTTTTACATC
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGATTGTTAAACTTTTACATC
* * * * *
8642652 TTTACGTATTTTCATTAAATTGTGGTGTCCTCTAATTAGTTCTCTTTTGGCTTTGTTTCTT-TTT
66 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTT-TTCCTT
* * *
8642716 TATCTTTCATGTGCAAAAGTCAAATCAAGAGATTTAATCATATTAATAACTGGACCATATGGTTG
130 TATCTTTCATATGCAAAAGTCAAATCAAGAGATTTAATCATATTAATAACTGGACCATCTGATTG
* * * *
8642781 TTAAACTTTTACATCTTTATGTATTTTCATTAAATTGCGATGTCCTCTAATAAGTTCTCTTTCGA
195 TTAAACTTTTACATCTTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAG--CTCTTTCGA
*
8642846 CTTTGTTTCTCTTTTATCTTTCATATGCA
258 CTTTGTTTCTCCTTTATCTTTCATATGCA
* * * *
8642875 AAAGTCAAATCAAAAAGTTTAATCATATTAATAACTGAACCATCTGATTGTTAAACTTTTATATC
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGATTGTTAAACTTTTACATC
* * * * * * * * * ** * *
8642940 TTTATATATTTTTATTAAATTGCGATATCCTCCTATGAGTTCCCTTCCGACTTTGTTTCCCCATC
66 TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTTT
* * * * * *
8643005 ATCTTTCACATGCAAATGTCAAATCAAAAAATTTAATCATATTAATAACTGAACTATCTG--T-T
131 ATCTTTCATATGCAAAAGTCAAATCAAGAGATTTAATCATATTAATAACTGGACCATCTGATTGT
* * * * *
8643067 T--A----T--ATCTTTATATACTTTCATTAAATTCTGGTGTCCTCCTATGAGTTCTCTTTCGGC
196 TAAACTTTTACATCTTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAG--CTCTTTCGAC
* * *
8643124 TTTGATTGTCCTTTATTTTTCATAT
259 TTTGTTTCTCCTTTATCTTTCATAT
8643149 ACAATTATAT
Statistics
Matches: 971, Mismatches: 142, Indels: 43
0.84 0.12 0.04
Matches are distributed among these distances:
277 66 0.07
279 28 0.03
280 107 0.11
281 72 0.07
283 1 0.00
284 1 0.00
285 248 0.26
286 151 0.16
287 85 0.09
288 211 0.22
289 1 0.00
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (286 bp):
AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGATTGTTAAACTTTTACATC
TTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCTCTTTCGGCTTTGTTTTTCCTTT
ATCTTTCATATGCAAAAGTCAAATCAAGAGATTTAATCATATTAATAACTGGACCATCTGATTGT
TAAACTTTTACATCTTTATGTATTTTCATTAAATTGTGGTGTCCTCCAATGAGCTCTTTCGACTT
TGTTTCTCCTTTATCTTTCATATGCA
Found at i:8642808 original size:429 final size:429
Alignment explanation
Indices: 8641736--8643148 Score: 1728
Period size: 429 Copynumber: 3.3 Consensus size: 429
8641726 TAAATTCAAC
* * ** *
8641736 AAAGCCAAATCAAAAGGTTTAATCATATTAATAACTGGA-CATCTTATTGTTAAATTTTTACATT
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGGTTGTTAAACTTTTACATT
* * *
8641800 TTTATGTATTTTCATTAAATTGTGGTGT-CTTTCGATGAGTTCTCTTTCGGTTTTGTTTCTTCTT
66 TTTATGTATTTTCATTAAATTGTGGTGTCCTCT-AATGAGTTCTCTTTCGGCTTTGTTTCTTCTT
* * * * *
8641864 TATCTTTCATATGTAAAAGTCAAATCAAGAGATTTAATCATTTTAATAATTGGATCATCTAATTG
130 TATCTTTCATATGCAAAAGTCAAATCAAGAGATTTAATCATATTAATAACTGGACCATCTAGTTG
*
8641929 TTAAACTTTTACATCTTTATATATTTTCATTAAATTGTAGTGTCCTCCAATA------TTTCGGC
195 TTAAACTTTTACATCTTTATATATTTTCATTAAATTGTGGTGTCCTCCAATAGTTCTCTTTCGGC
*
8641988 TTTGTTTTTCTTTTATCTTTCATATGCAAAAATCAAATCAAGAGGTTTAATCATATTAATAACTG
260 TTTGTTTTTCTTTTATCTTTCATATGCAAAAGTCAAATCAAGAGGTTTAATCATATTAATAACTG
* * * * * *
8642053 GACTATTTGATTATTAAACTTTTACATCTTTATGTATTTTTATTAAATTGTGACGTCCTCTAATG
325 GACCATCTGATTGTTAAACTTTTACATCTTTATGTATTCTCATTAAATTGTGACGTCCTCCAATG
* * *
8642118 AGTTATCTTTCAGCTTTGTTTCTCTTTTATTTTCATACGCA
390 AG-TATCTTACAGCTTTGTTTCTCCTTTATTTTCATACACA
* * * *
8642159 AAAATCAAATCAAGAGGTTTAATTATATTAATAACTGGACCATCTGGTTGTTAAACCTATACATT
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGGTTGTTAAACTTTTACATT
* * * *
8642224 TTTATGT-TTTTCATTAAATTGTGGTGTCCTCCAATGAGTTCT-TTTCCGACTTTGCTTGTTCTT
66 TTTATGTATTTTCATTAAATTGTGGTGTCCTCTAATGAGTTCTCTTT-CGGCTTTGTTTCTTCTT
* *
8642287 TATCTTTCATATGCAAAAGTCAAATCAGGATG-TTTAATCATATTAACAACTGGACCATCTAGTT
130 TATCTTTCATATGCAAAAGTCAAATCAAGA-GATTTAATCATATTAATAACTGGACCATCTAGTT
*
8642351 GTTAAACTTTTACATCTTTATATATTTTCATTAAATTGTGGTGTCCACCAATGAGTTCTCTTTCG
194 GTTAAACTTTTACATCTTTATATATTTTCATTAAATTGTGGTGTCCTCCAAT-AGTTCTCTTTCG
* *
8642416 GCTTTGTTTTTCCTTTATCTTTCATATGCAAAAGTCAAATCAGGAGGTTTAATCATATTAATAAC
258 GCTTTGTTTTTCTTTTATCTTTCATATGCAAAAGTCAAATCAAGAGGTTTAATCATATTAATAAC
* **
8642481 TGGACCATCTGATTGTTAAACTTTTACATCTTTATGTGTTCTCATTAAATTGTGGTGTCC-CCAA
323 TGGACCATCTGATTGTTAAACTTTTACATCTTTATGTATTCTCATTAAATTGTGACGTCCTCCAA
* *
8642545 TGAG-CTCTTACAGCTTTGTTTCTCCTTTATCTTTCATATACA
388 TGAGTATCTTACAGCTTTGTTTCTCCTTTAT-TTTCATACACA
* *
8642587 AAAGTCAAATCAGGAGGTTTAATCATATTAATAACTGGACCATCTGGTTGTTAAACTTTTACATC
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGGTTGTTAAACTTTTACATT
* * * *
8642652 TTTACGTATTTTCATTAAATTGTGGTGTCCTCTAATTAGTTCTCTTTTGGCTTTGTTTCTTTTTT
66 TTTATGTATTTTCATTAAATTGTGGTGTCCTCTAATGAGTTCTCTTTCGGCTTTGTTTCTTCTTT
* * *
8642717 ATCTTTCATGTGCAAAAGTCAAATCAAGAGATTTAATCATATTAATAACTGGACCATATGGTTGT
131 ATCTTTCATATGCAAAAGTCAAATCAAGAGATTTAATCATATTAATAACTGGACCATCTAGTTGT
* * * * *
8642782 TAAACTTTTACATCTTTATGTATTTTCATTAAATTGCGATGTCCTCTAATAAGTTCTCTTTCGAC
196 TAAACTTTTACATCTTTATATATTTTCATTAAATTGTGGTGTCCTCCAAT-AGTTCTCTTTCGGC
* * *
8642847 TTTGTTTCTCTTTTATCTTTCATATGCAAAAGTCAAATCAAAAAGTTTAATCATATTAATAACTG
260 TTTGTTTTTCTTTTATCTTTCATATGCAAAAGTCAAATCAAGAGGTTTAATCATATTAATAACTG
* * * * * * ** *
8642912 AACCATCTGATTGTTAAACTTTTATATCTTTATATATTTTTATTAAATTGCGATATCCTCCTATG
325 GACCATCTGATTGTTAAACTTTTACATCTTTATGTATTCTCATTAAATTGTGACGTCCTCCAATG
* * * * * **
8642977 AGT-TCCCTT-CCGACTTTGTTTCCCCATCATCTTTCACATGCA
390 AGTAT--CTTACAG-CTTTGTTTCTCCTTTAT-TTTCATACACA
* * ** * * *
8643019 AATGTCAAATCAAAAAATTTAATCATATTAATAACTGAACTATCT-G-T-TT--A----T--ATC
1 AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGGTTGTTAAACTTTTACATT
* * * * * *
8643073 TTTATATACTTTCATTAAATTCTGGTGTCCTCCT-ATGAGTTCTCTTTCGGCTTTGATTGTCCTT
66 TTTATGTATTTTCATTAAATTGTGGTGTCCT-CTAATGAGTTCTCTTTCGGCTTTGTTTCTTCTT
*
8643137 TATTTTTCATAT
130 TATCTTTCATAT
8643149 ACAATTATAT
Statistics
Matches: 861, Mismatches: 108, Indels: 44
0.85 0.11 0.04
Matches are distributed among these distances:
421 64 0.07
422 5 0.01
423 183 0.21
424 31 0.04
427 24 0.03
428 75 0.09
429 280 0.33
430 131 0.15
431 3 0.00
432 65 0.08
ACGTcount: A:0.28, C:0.16, G:0.12, T:0.44
Consensus pattern (429 bp):
AAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGGACCATCTGGTTGTTAAACTTTTACATT
TTTATGTATTTTCATTAAATTGTGGTGTCCTCTAATGAGTTCTCTTTCGGCTTTGTTTCTTCTTT
ATCTTTCATATGCAAAAGTCAAATCAAGAGATTTAATCATATTAATAACTGGACCATCTAGTTGT
TAAACTTTTACATCTTTATATATTTTCATTAAATTGTGGTGTCCTCCAATAGTTCTCTTTCGGCT
TTGTTTTTCTTTTATCTTTCATATGCAAAAGTCAAATCAAGAGGTTTAATCATATTAATAACTGG
ACCATCTGATTGTTAAACTTTTACATCTTTATGTATTCTCATTAAATTGTGACGTCCTCCAATGA
GTATCTTACAGCTTTGTTTCTCCTTTATTTTCATACACA
Found at i:8646750 original size:28 final size:26
Alignment explanation
Indices: 8646710--8646778 Score: 66
Period size: 28 Copynumber: 2.5 Consensus size: 26
8646700 TCTCTCACTC
* *
8646710 TTTTTTTTTTTTTAACTTTTTTCAAAAG
1 TTTTTTATATTTTAA-TTTTTTC-AAAG
* *
8646738 TTTTTTATATTTTTAATTTTTTCACAT
1 TTTTTTATA-TTTTAATTTTTTCAAAG
*
8646765 TTTTTTAAATTTTA
1 TTTTTTATATTTTA
8646779 TAAATATTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
26 5 0.14
27 10 0.29
28 14 0.40
29 6 0.17
ACGTcount: A:0.23, C:0.06, G:0.01, T:0.70
Consensus pattern (26 bp):
TTTTTTATATTTTAATTTTTTCAAAG
Found at i:8646777 original size:9 final size:9
Alignment explanation
Indices: 8646717--8646809 Score: 57
Period size: 9 Copynumber: 10.0 Consensus size: 9
8646707 CTCTTTTTTT
*
8646717 TTTTTTAAC
1 TTTTTTAAA
8646726 TTTTTTCAAAA
1 TTTTTT--AAA
*
8646737 GTTTTTTATA
1 -TTTTTTAAA
8646747 -TTTTT-AA
1 TTTTTTAAA
*
8646754 TTTTTTCACAT
1 TTTTTT-A-AA
8646765 TTTTTTAAA
1 TTTTTTAAA
*
8646774 TTTTATAAA
1 TTTTTTAAA
8646783 TATTTTTAAA
1 T-TTTTTAAA
**
8646793 -AATTTAAA
1 TTTTTTAAA
8646801 TTTTTTAAA
1 TTTTTTAAA
8646810 GTGGGATCCA
Statistics
Matches: 64, Mismatches: 11, Indels: 18
0.69 0.12 0.19
Matches are distributed among these distances:
7 1 0.02
8 16 0.25
9 22 0.34
10 10 0.16
11 9 0.14
12 6 0.09
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.61
Consensus pattern (9 bp):
TTTTTTAAA
Found at i:8646788 original size:19 final size:18
Alignment explanation
Indices: 8646744--8646809 Score: 62
Period size: 19 Copynumber: 3.6 Consensus size: 18
8646734 AAAGTTTTTT
* *
8646744 ATATTTTTAATTTTTTCAC
1 ATATTTTTAAATTTTT-AA
*
8646763 ATTTTTTTAAATTTTATAA
1 ATATTTTTAAATTTT-TAA
**
8646782 ATATTTTTAAAAATTTAA
1 ATATTTTTAAATTTTTAA
8646800 AT-TTTTTAAA
1 ATATTTTTAAA
8646810 GTGGGATCCA
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
17 8 0.20
18 5 0.12
19 26 0.65
20 1 0.03
ACGTcount: A:0.38, C:0.03, G:0.00, T:0.59
Consensus pattern (18 bp):
ATATTTTTAAATTTTTAA
Found at i:8646845 original size:123 final size:124
Alignment explanation
Indices: 8646725--8646946 Score: 305
Period size: 124 Copynumber: 1.8 Consensus size: 124
8646715 TTTTTTTTAA
* *
8646725 CTTTTTTCAAAAGTT-TTTTATATTTTT-A-A-TTTTTTCACATTTTTTTAAATTTTATAAATA-
1 CTTTTTTCAAAA-TTATTTTAT-TTTTTCAGATTTTTTTCA-AATTTTTAAAATTTTATAAATAG
*
8646785 TTTTTAAAA-ATTTAAATTTTTTAA-AGTGGGATCCACTTTATAACAACATTTTTTCCTTTTT
63 TTTTTAAAAGATTTAAATATTTTAAGA-TGGGATCCACTTTATAACAACATTTTTTCCTTTTT
* *
8646846 CTTTTTTTAAAATTATTTTATTTTTTCAGATTTTTTTCAAATTTTTAAAATTTTATTAATAGTTT
1 CTTTTTTCAAAATTATTTTATTTTTTCAGATTTTTTTCAAATTTTTAAAATTTTATAAATAGTTT
*
8646911 TTAAAAGATTTAAATATTTTAAGATGGGATCTACTT
66 TTAAAAGATTTAAATATTTTAAGATGGGATCCACTT
8646947 CATACCAGTT
Statistics
Matches: 88, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
120 7 0.08
121 18 0.20
122 20 0.23
123 17 0.19
124 25 0.28
125 1 0.01
ACGTcount: A:0.32, C:0.07, G:0.05, T:0.56
Consensus pattern (124 bp):
CTTTTTTCAAAATTATTTTATTTTTTCAGATTTTTTTCAAATTTTTAAAATTTTATAAATAGTTT
TTAAAAGATTTAAATATTTTAAGATGGGATCCACTTTATAACAACATTTTTTCCTTTTT
Found at i:8647011 original size:16 final size:17
Alignment explanation
Indices: 8646989--8647033 Score: 51
Period size: 15 Copynumber: 2.8 Consensus size: 17
8646979 TCATTTTTGA
8646989 AAATTTTTTTGTAA-TT
1 AAATTTTTTTGTAATTT
*
8647005 -ATTTTTTGTTG-AATTT
1 AAATTTTT-TTGTAATTT
8647021 AAATTTTTTTGTA
1 AAATTTTTTTGTA
8647034 TGAGATCCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 7
0.72 0.06 0.22
Matches are distributed among these distances:
15 8 0.35
16 8 0.35
17 7 0.30
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (17 bp):
AAATTTTTTTGTAATTT
Found at i:8647415 original size:12 final size:11
Alignment explanation
Indices: 8647392--8647431 Score: 53
Period size: 12 Copynumber: 3.5 Consensus size: 11
8647382 CAACTTTTAA
8647392 ATTTTATATTTT
1 ATTTTAT-TTTT
*
8647404 ATTTTCTTTTTT
1 ATTTT-ATTTTT
8647416 ATTTTATTTTT
1 ATTTTATTTTT
8647427 ATTTT
1 ATTTT
8647432 TTTAAAATCA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
11 10 0.40
12 14 0.56
13 1 0.04
ACGTcount: A:0.17, C:0.03, G:0.00, T:0.80
Consensus pattern (11 bp):
ATTTTATTTTT
Found at i:8647431 original size:17 final size:18
Alignment explanation
Indices: 8647392--8647432 Score: 59
Period size: 17 Copynumber: 2.3 Consensus size: 18
8647382 CAACTTTTAA
8647392 ATTTTATATTTTATTTTCT
1 ATTTT-TATTTTATTTTCT
8647411 -TTTTTATTTTATTTT-T
1 ATTTTTATTTTATTTTCT
8647427 ATTTTT
1 ATTTTT
8647433 TTAAAATCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
16 1 0.05
17 16 0.76
18 4 0.19
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.80
Consensus pattern (18 bp):
ATTTTTATTTTATTTTCT
Found at i:8649542 original size:24 final size:24
Alignment explanation
Indices: 8649510--8649557 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
8649500 AAGCTTTAAA
8649510 GATTCTCGAATATTCATTTCTTAG
1 GATTCTCGAATATTCATTTCTTAG
*
8649534 GATTCTCGAATATTCATTTTTTAG
1 GATTCTCGAATATTCATTTCTTAG
8649558 AAGCCTAAAA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.15, G:0.12, T:0.48
Consensus pattern (24 bp):
GATTCTCGAATATTCATTTCTTAG
Found at i:8661356 original size:19 final size:19
Alignment explanation
Indices: 8661334--8661374 Score: 73
Period size: 19 Copynumber: 2.2 Consensus size: 19
8661324 AAGCCAAAAT
*
8661334 AATCAATTCTATTCGAACC
1 AATCAATTCTATTAGAACC
8661353 AATCAATTCTATTAGAACC
1 AATCAATTCTATTAGAACC
8661372 AAT
1 AAT
8661375 ACGGATCGCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.41, C:0.22, G:0.05, T:0.32
Consensus pattern (19 bp):
AATCAATTCTATTAGAACC
Found at i:8673793 original size:72 final size:74
Alignment explanation
Indices: 8673717--8673861 Score: 197
Period size: 77 Copynumber: 1.9 Consensus size: 74
8673707 GGTACAATAC
** *
8673717 ATATGTAATTTT-TTAAAATAAA-AGGCTATATACAAATAAAAATAAATCAAATATAGAA-TTAT
1 ATATGTAATTTTAAAAAAAAAAAGAGGC-ATATACAAATAAAAATAAATCAAATATAGAATTTAT
8673779 AGATATCAAA
65 AGATATCAAA
8673789 ATATGTAATTTTCAAAAAAAAAAAAAAGAGGCATATACAAATAAAAATAAATCAAATATAGAATT
1 ATATGTAATTTT----AAAAAAAAAAAGAGGCATATACAAATAAAAATAAATCAAATATAGAATT
8673854 TATAGATA
62 TATAGATA
8673862 CCAATTTATA
Statistics
Matches: 63, Mismatches: 3, Indels: 8
0.85 0.04 0.11
Matches are distributed among these distances:
72 12 0.19
77 38 0.60
78 13 0.21
ACGTcount: A:0.58, C:0.06, G:0.08, T:0.29
Consensus pattern (74 bp):
ATATGTAATTTTAAAAAAAAAAAGAGGCATATACAAATAAAAATAAATCAAATATAGAATTTATA
GATATCAAA
Found at i:8674186 original size:15 final size:14
Alignment explanation
Indices: 8674160--8674193 Score: 52
Period size: 15 Copynumber: 2.4 Consensus size: 14
8674150 TTATTTTATT
8674160 TTTAA-TAGTTAAA
1 TTTAATTAGTTAAA
8674173 TTTAATTAGATTAAA
1 TTTAATTAG-TTAAA
8674188 TTTAAT
1 TTTAAT
8674194 AAAATTAAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.26
14 3 0.16
15 11 0.58
ACGTcount: A:0.44, C:0.00, G:0.06, T:0.50
Consensus pattern (14 bp):
TTTAATTAGTTAAA
Found at i:8674200 original size:15 final size:15
Alignment explanation
Indices: 8674168--8674202 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
8674158 TTTTTAATAG
* *
8674168 TTAAATTTAATTAGA
1 TTAAATTTAATAAAA
8674183 TTAAATTTAATAAAA
1 TTAAATTTAATAAAA
8674198 TTAAA
1 TTAAA
8674203 GATATAAATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (15 bp):
TTAAATTTAATAAAA
Found at i:8683358 original size:14 final size:14
Alignment explanation
Indices: 8683339--8683368 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
8683329 ACTTTCCTTC
8683339 TACGTCATTAGGAT
1 TACGTCATTAGGAT
8683353 TACGTCATTAGGAT
1 TACGTCATTAGGAT
8683367 TA
1 TA
8683369 GACCACTTTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.30, C:0.13, G:0.20, T:0.37
Consensus pattern (14 bp):
TACGTCATTAGGAT
Found at i:8684737 original size:143 final size:143
Alignment explanation
Indices: 8684478--8684744 Score: 410
Period size: 143 Copynumber: 1.9 Consensus size: 143
8684468 GAATTTAACA
* *
8684478 GAATAGCCATTCTAGCATGATTTTGTTCACATGCATAATACAATTTTGGATTATTTTATAAAGCC
1 GAATAACCATTCTAGCATGATTCTGTTCACATGCATAATACAATTTTGGATTATTTTATAAAGCC
* *
8684543 TCCAATCTCAGTTTTATATCAGTAATTATCATTTAACAGGATCATTCAGATAAATGGTGCGAATC
66 TCCAATCTCAGTTTTATATCAGTAACTACCATTTAACAGGATCATTCAGATAAATGGTGCGAATC
8684608 ACTTTCTACAATG
131 ACTTTCTACAATG
* *
8684621 GAATAACCATTCTAGCATGATTCTGTTCACATGCATAATATAATTTTGGGTTATTTTATAAAGCC
1 GAATAACCATTCTAGCATGATTCTGTTCACATGCATAATACAATTTTGGATTATTTTATAAAGCC
* * * * * *
8684686 TCTAATCTC-GATTTTGTATCAGTAACTACCGTTTAATATGATCATTTAGATAAATGGTG
66 TCCAATCTCAG-TTTTATATCAGTAACTACCATTTAACAGGATCATTCAGATAAATGGTG
8684745 TGTATCATTT
Statistics
Matches: 111, Mismatches: 12, Indels: 2
0.89 0.10 0.02
Matches are distributed among these distances:
142 1 0.01
143 110 0.99
ACGTcount: A:0.32, C:0.16, G:0.14, T:0.38
Consensus pattern (143 bp):
GAATAACCATTCTAGCATGATTCTGTTCACATGCATAATACAATTTTGGATTATTTTATAAAGCC
TCCAATCTCAGTTTTATATCAGTAACTACCATTTAACAGGATCATTCAGATAAATGGTGCGAATC
ACTTTCTACAATG
Found at i:8685527 original size:32 final size:32
Alignment explanation
Indices: 8685486--8685552 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
8685476 GGTTGAAAAG
* *
8685486 TGAAGTAAGGCATTCAATTAGCCTTTTATGTT
1 TGAAGTAAGGCACTCAATTAACCTTTTATGTT
* *
8685518 TGAAGTAAGGCACTCTATTAACCTTTTTTGTT
1 TGAAGTAAGGCACTCAATTAACCTTTTATGTT
8685550 TGA
1 TGA
8685553 GTCCAATTTC
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.27, C:0.13, G:0.18, T:0.42
Consensus pattern (32 bp):
TGAAGTAAGGCACTCAATTAACCTTTTATGTT
Found at i:8686957 original size:20 final size:20
Alignment explanation
Indices: 8686934--8686976 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
8686924 TTTTTTTAAG
8686934 TTTTCAA-TTAAATTCAATTT
1 TTTTCAAGTT-AATTCAATTT
*
8686954 TTTTCAAGTTAATTTAATTT
1 TTTTCAAGTTAATTCAATTT
8686974 TTT
1 TTT
8686977 GCATGTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
20 19 0.90
21 2 0.10
ACGTcount: A:0.30, C:0.07, G:0.02, T:0.60
Consensus pattern (20 bp):
TTTTCAAGTTAATTCAATTT
Found at i:8686986 original size:21 final size:20
Alignment explanation
Indices: 8686944--8686996 Score: 61
Period size: 20 Copynumber: 2.5 Consensus size: 20
8686934 TTTTCAATTA
* *
8686944 AATTCAATTTTTTTCAAGTT
1 AATTTAATTTTTTGCAAGTT
*
8686964 AATTTAATTTTTTGCATGTTT
1 AATTTAATTTTTTGCAAG-TT
8686985 AATTTAAGTTTT
1 AATTTAA-TTTT
8686997 CAAGCAATTT
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
20 15 0.54
21 9 0.32
22 4 0.14
ACGTcount: A:0.28, C:0.06, G:0.08, T:0.58
Consensus pattern (20 bp):
AATTTAATTTTTTGCAAGTT
Found at i:8687546 original size:23 final size:23
Alignment explanation
Indices: 8687520--8687567 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
8687510 TTGGTACTTA
8687520 GTATAACTTTATTTACAATCCTT
1 GTATAACTTTATTTACAATCCTT
8687543 GTATAACTTTATTTACAATCCTT
1 GTATAACTTTATTTACAATCCTT
8687566 GT
1 GT
8687568 GGAAAAGATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.29, C:0.17, G:0.06, T:0.48
Consensus pattern (23 bp):
GTATAACTTTATTTACAATCCTT
Found at i:8689947 original size:2 final size:2
Alignment explanation
Indices: 8689940--8689973 Score: 68
Period size: 2 Copynumber: 17.0 Consensus size: 2
8689930 TCACACTTCG
8689940 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8689974 ATCATTTAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8698963 original size:11 final size:12
Alignment explanation
Indices: 8698937--8698967 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
8698927 TTCTTTTCCT
8698937 AAAAAAGAAAAG
1 AAAAAAGAAAAG
8698949 AAAAAAGAAAA-
1 AAAAAAGAAAAG
8698960 AAAAAAGA
1 AAAAAAGA
8698968 GAATTTTAAG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.87, C:0.00, G:0.13, T:0.00
Consensus pattern (12 bp):
AAAAAAGAAAAG
Found at i:8699102 original size:38 final size:38
Alignment explanation
Indices: 8699059--8699135 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
8699049 AATGATGAAA
*
8699059 ATAATAAGATAATACATGTATCTCATCTCATACACATC
1 ATAATAAGATAATACATGCATCTCATCTCATACACATC
* * *
8699097 ATAATAAGATAATACATGCATTTTATCTCATTCACATC
1 ATAATAAGATAATACATGCATCTCATCTCATACACATC
8699135 A
1 A
8699136 ATAAATAGTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 35 1.00
ACGTcount: A:0.42, C:0.19, G:0.05, T:0.34
Consensus pattern (38 bp):
ATAATAAGATAATACATGCATCTCATCTCATACACATC
Found at i:8706135 original size:32 final size:32
Alignment explanation
Indices: 8706099--8706193 Score: 118
Period size: 32 Copynumber: 3.0 Consensus size: 32
8706089 ATTAACTGGT
* *
8706099 AACTAAGCTCAATCAAGCTGGCATCCAGATCA
1 AACTAAGCTCAGTCAAGCTGGCACCCAGATCA
* * *
8706131 AACTAAGTTTAGTCAAGCTGGCACCCATATCA
1 AACTAAGCTCAGTCAAGCTGGCACCCAGATCA
* * *
8706163 AACTTAGCCCAGTCAAGTTGGCACCCAGATC
1 AACTAAGCTCAGTCAAGCTGGCACCCAGATC
8706194 TTTAAGACCT
Statistics
Matches: 52, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 52 1.00
ACGTcount: A:0.34, C:0.28, G:0.17, T:0.21
Consensus pattern (32 bp):
AACTAAGCTCAGTCAAGCTGGCACCCAGATCA
Found at i:8706998 original size:17 final size:17
Alignment explanation
Indices: 8706960--8707012 Score: 63
Period size: 17 Copynumber: 3.1 Consensus size: 17
8706950 AATTATTTGC
*
8706960 AAAAATT-AATTATCAAT
1 AAAAATTAAATTA-CAAA
*
8706977 TAAAATTAAATTACAAA
1 AAAAATTAAATTACAAA
*
8706994 AAAAAATAAATTACAAA
1 AAAAATTAAATTACAAA
8707011 AA
1 AA
8707013 TAGAAAAAGG
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
17 26 0.84
18 5 0.16
ACGTcount: A:0.68, C:0.06, G:0.00, T:0.26
Consensus pattern (17 bp):
AAAAATTAAATTACAAA
Found at i:8708470 original size:25 final size:25
Alignment explanation
Indices: 8708417--8708471 Score: 74
Period size: 25 Copynumber: 2.2 Consensus size: 25
8708407 TTTATTTTAG
* ** *
8708417 AGAGATAAGCTCTCATTATAATGAT
1 AGAGATAAGCTCTCATTAAAAAAAA
8708442 AGAGATAAGCTCTCATTAAAAAAAA
1 AGAGATAAGCTCTCATTAAAAAAAA
8708467 AGAGA
1 AGAGA
8708472 AAAGACTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.49, C:0.11, G:0.16, T:0.24
Consensus pattern (25 bp):
AGAGATAAGCTCTCATTAAAAAAAA
Found at i:8709037 original size:19 final size:17
Alignment explanation
Indices: 8709007--8709052 Score: 65
Period size: 18 Copynumber: 2.6 Consensus size: 17
8708997 TAAAAAAAGA
8709007 TTAAAAAATATAAATTAT
1 TTAAAAAATATAAATT-T
*
8709025 TTAAAAAAGTATACATTT
1 TTAAAAAA-TATAAATTT
8709043 TTAAAAAATA
1 TTAAAAAATA
8709053 AATTTATAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
17 2 0.08
18 17 0.65
19 7 0.27
ACGTcount: A:0.59, C:0.02, G:0.02, T:0.37
Consensus pattern (17 bp):
TTAAAAAATATAAATTT
Found at i:8709062 original size:15 final size:15
Alignment explanation
Indices: 8709010--8709062 Score: 52
Period size: 18 Copynumber: 3.2 Consensus size: 15
8709000 AAAAAGATTA
8709010 AAAAATATAAATTATTT
1 AAAAA-ATAAATT-TTT
8709027 AAAAAAGTATACATTTTT
1 AAAAAA-TA-A-ATTTTT
*
8709045 AAAAAATAAATTTAT
1 AAAAAATAAATTTTT
8709060 AAA
1 AAA
8709063 TAATTATATT
Statistics
Matches: 32, Mismatches: 1, Indels: 8
0.78 0.02 0.20
Matches are distributed among these distances:
15 8 0.25
16 2 0.06
17 9 0.28
18 10 0.31
19 3 0.09
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (15 bp):
AAAAAATAAATTTTT
Found at i:8726010 original size:23 final size:22
Alignment explanation
Indices: 8725970--8726012 Score: 59
Period size: 23 Copynumber: 1.9 Consensus size: 22
8725960 TTAATTATTA
* *
8725970 ATTAATTTTTAAATTAATTTCG
1 ATTAATTTTAAAAATAATTTCG
8725992 ATTAATTATTAAAAATAATTT
1 ATTAATT-TTAAAAATAATTT
8726013 TAAAAAAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.51
Consensus pattern (22 bp):
ATTAATTTTAAAAATAATTTCG
Found at i:8726280 original size:14 final size:13
Alignment explanation
Indices: 8726241--8726285 Score: 54
Period size: 14 Copynumber: 3.3 Consensus size: 13
8726231 TATTTATATT
8726241 ATTTAATTAATTA
1 ATTTAATTAATTA
* *
8726254 AATCAATTGAATTA
1 ATTTAATT-AATTA
8726268 ATTTAAATTAATTA
1 ATTT-AATTAATTA
8726282 ATTT
1 ATTT
8726286 TTAAAATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
13 6 0.23
14 16 0.62
15 4 0.15
ACGTcount: A:0.47, C:0.02, G:0.02, T:0.49
Consensus pattern (13 bp):
ATTTAATTAATTA
Found at i:8726654 original size:35 final size:35
Alignment explanation
Indices: 8726615--8726684 Score: 106
Period size: 35 Copynumber: 2.0 Consensus size: 35
8726605 ATTTGGTTTG
8726615 AGAAAAT-GTTTTTATTTTTTTAATATTTATTTTTT
1 AGAAAATAGTTTTTA-TTTTTTAATATTTATTTTTT
* *
8726650 AGAAAATAGTTTTTATTTTTTATTTTTTATTTTTT
1 AGAAAATAGTTTTTATTTTTTAATATTTATTTTTT
8726685 TGTTTTCTAA
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
35 25 0.78
36 7 0.22
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (35 bp):
AGAAAATAGTTTTTATTTTTTAATATTTATTTTTT
Found at i:8726690 original size:7 final size:7
Alignment explanation
Indices: 8726659--8726684 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
8726649 TAGAAAATAG
8726659 TTTTTAT
1 TTTTTAT
8726666 TTTTTAT
1 TTTTTAT
8726673 TTTTTAT
1 TTTTTAT
8726680 TTTTT
1 TTTTT
8726685 TGTTTTCTAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.00, T:0.88
Consensus pattern (7 bp):
TTTTTAT
Found at i:8726690 original size:14 final size:15
Alignment explanation
Indices: 8726658--8726690 Score: 52
Period size: 14 Copynumber: 2.3 Consensus size: 15
8726648 TTAGAAAATA
8726658 GTTTTTATTTTTTAT
1 GTTTTTATTTTTTAT
8726673 -TTTTTATTTTTT-T
1 GTTTTTATTTTTTAT
8726686 GTTTT
1 GTTTT
8726691 CTAAAAAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
13 1 0.06
14 16 0.94
ACGTcount: A:0.09, C:0.00, G:0.06, T:0.85
Consensus pattern (15 bp):
GTTTTTATTTTTTAT
Found at i:8727292 original size:18 final size:19
Alignment explanation
Indices: 8727244--8727293 Score: 50
Period size: 18 Copynumber: 2.7 Consensus size: 19
8727234 TTCTAATATT
*
8727244 TATAA-AAATTAAAATTGA
1 TATAATAAATTAAAAATGA
* *
8727262 TAAAAATATATTAAAAATG-
1 T-ATAATAAATTAAAAATGA
8727281 TATAATAAATTAA
1 TATAATAAATTAA
8727294 TTATTTTTAA
Statistics
Matches: 25, Mismatches: 5, Indels: 4
0.74 0.15 0.12
Matches are distributed among these distances:
18 11 0.44
19 4 0.16
20 10 0.40
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.34
Consensus pattern (19 bp):
TATAATAAATTAAAAATGA
Found at i:8727361 original size:14 final size:15
Alignment explanation
Indices: 8727334--8727366 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
8727324 GAGATTTTGA
*
8727334 TTAAAAATATAATTT
1 TTAAAAATATAATTC
8727349 TTAAAAATA-AATTC
1 TTAAAAATATAATTC
8727363 TTAA
1 TTAA
8727367 GTTAAAAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 8 0.47
15 9 0.53
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (15 bp):
TTAAAAATATAATTC
Found at i:8727710 original size:18 final size:18
Alignment explanation
Indices: 8727687--8727721 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
8727677 GAATTCTCAC
8727687 AAATAT-ATATTTATTATA
1 AAATATAAT-TTTATTATA
8727705 AAATATAATTTTATTAT
1 AAATATAATTTTATTAT
8727722 TTAGTATACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.88
19 2 0.12
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
AAATATAATTTTATTATA
Found at i:8737638 original size:16 final size:16
Alignment explanation
Indices: 8737617--8737648 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
8737607 AAAATCATCG
8737617 TAAATCATCATTATCA
1 TAAATCATCATTATCA
8737633 TAAATCATCATTATCA
1 TAAATCATCATTATCA
8737649 ATCAAATCGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.44, C:0.19, G:0.00, T:0.38
Consensus pattern (16 bp):
TAAATCATCATTATCA
Found at i:8737663 original size:15 final size:15
Alignment explanation
Indices: 8737643--8737675 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
8737633 TAAATCATCA
8737643 TTATCAATCAAATCG
1 TTATCAATCAAATCG
*
8737658 TTATCATTCAAATCG
1 TTATCAATCAAATCG
8737673 TTA
1 TTA
8737676 GCTACAGTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.36, C:0.18, G:0.06, T:0.39
Consensus pattern (15 bp):
TTATCAATCAAATCG
Found at i:8743202 original size:74 final size:73
Alignment explanation
Indices: 8743081--8743230 Score: 214
Period size: 74 Copynumber: 2.0 Consensus size: 73
8743071 TAGCAGCAGG
* * *
8743081 ATGCTTTAGTATCTTTCTTGTTTTTATCCAATATATTTACTAACAAGAAGCTACA-TGTTCTAAG
1 ATGCTTTAGTATCTTTCTCGTTTTTATCCAACATATTTACTAACAAGAAGCTA-AGAGTTCTAAG
8743145 TTAAAATACT
65 TTAAAATA-T
*
8743155 ATGCTTTAGTATCTTTCTCG-TTTTAGTCCAACATATTTACTCACAAGAAGCTAAGAGTTCTAAG
1 ATGCTTTAGTATCTTTCTCGTTTTTA-TCCAACATATTTACTAACAAGAAGCTAAGAGTTCTAAG
*
8743219 TTAATATAT
65 TTAAAATAT
8743228 ATG
1 ATG
8743231 TATGTATGTA
Statistics
Matches: 69, Mismatches: 5, Indels: 5
0.87 0.06 0.06
Matches are distributed among these distances:
73 10 0.14
74 59 0.86
ACGTcount: A:0.32, C:0.15, G:0.11, T:0.41
Consensus pattern (73 bp):
ATGCTTTAGTATCTTTCTCGTTTTTATCCAACATATTTACTAACAAGAAGCTAAGAGTTCTAAGT
TAAAATAT
Found at i:8743234 original size:4 final size:4
Alignment explanation
Indices: 8743227--8743251 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
8743217 AGTTAATATA
8743227 TATG TATG TATG TATG TATG TATG T
1 TATG TATG TATG TATG TATG TATG T
8743252 CGTGTGTGTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.24, C:0.00, G:0.24, T:0.52
Consensus pattern (4 bp):
TATG
Found at i:8749792 original size:43 final size:43
Alignment explanation
Indices: 8749731--8749817 Score: 174
Period size: 43 Copynumber: 2.0 Consensus size: 43
8749721 AGAATTACAA
8749731 ACTTATATCAAATCATCAACCTCACTCAACAATCAATACTCAT
1 ACTTATATCAAATCATCAACCTCACTCAACAATCAATACTCAT
8749774 ACTTATATCAAATCATCAACCTCACTCAACAATCAATACTCAT
1 ACTTATATCAAATCATCAACCTCACTCAACAATCAATACTCAT
8749817 A
1 A
8749818 AGACACTCTC
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 44 1.00
ACGTcount: A:0.43, C:0.30, G:0.00, T:0.28
Consensus pattern (43 bp):
ACTTATATCAAATCATCAACCTCACTCAACAATCAATACTCAT
Found at i:8750109 original size:23 final size:23
Alignment explanation
Indices: 8750082--8750127 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
8750072 TACCTAACCC
8750082 TGTAGAGACTTCACCTATTTATA
1 TGTAGAGACTTCACCTATTTATA
8750105 TGTAGAGACTTCACCTATTTATA
1 TGTAGAGACTTCACCTATTTATA
8750128 ACCATACAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.13, T:0.39
Consensus pattern (23 bp):
TGTAGAGACTTCACCTATTTATA
Found at i:8750204 original size:52 final size:52
Alignment explanation
Indices: 8750134--8750290 Score: 192
Period size: 52 Copynumber: 3.0 Consensus size: 52
8750124 TATAACCATA
* *
8750134 CAAACTTACCCATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTATAAGT
1 CAAACTTACCTATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTACAAGT
* * * *
8750186 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTCTCTTGCAAGT
1 CAAACTTACCTATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTACAAGT
* * * *
8750238 CAAACTTACCTATTAAAAAT-CCTCTTTCTCTT-GAAATTCTTCTTTTGCAAGT
1 CAAACTTACCTATTAAGAATCCCTC-TCCTCTTAG-AATTCTTCTCTTACAAGT
8750290 C
1 C
8750291 TTCTTGTCCA
Statistics
Matches: 91, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
51 4 0.04
52 87 0.96
ACGTcount: A:0.27, C:0.26, G:0.07, T:0.39
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTACAAGT
Found at i:8750711 original size:31 final size:30
Alignment explanation
Indices: 8750670--8750754 Score: 107
Period size: 31 Copynumber: 2.8 Consensus size: 30
8750660 TTCGAACCTT
* * * *
8750670 CAGCTTTGATATCACTTGTTGGGGATCACCA
1 CAGCTCTGATACCATTTGTTGGGAAT-ACCA
8750701 CAGCTCTGATACCATTTGTTAGGGAATACCA
1 CAGCTCTGATACCATTTGTT-GGGAATACCA
*
8750732 TAGCTCTGATACCATTTGTTGGG
1 CAGCTCTGATACCATTTGTTGGG
8750755 CTAAAAGCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
30 3 0.06
31 40 0.83
32 5 0.10
ACGTcount: A:0.24, C:0.21, G:0.22, T:0.33
Consensus pattern (30 bp):
CAGCTCTGATACCATTTGTTGGGAATACCA
Found at i:8751309 original size:52 final size:52
Alignment explanation
Indices: 8751239--8751385 Score: 174
Period size: 52 Copynumber: 2.8 Consensus size: 52
8751229 TATAACCATA
*
8751239 CAAACTTATCC-ATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTATAAGT
1 CAAACTTA-CCTATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTACAAGT
* * * * *
8751291 CAAACTTGCCTATTAAGAATCCCTTTCCTTTTAGAATTCTTTTCTTGCAAGT
1 CAAACTTACCTATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTACAAGT
* *
8751343 CAAATTTACCTATTAAGAAT-CCTCTTTCTCTT-GAAATTCTTCT
1 CAAACTTACCTATTAAGAATCCCTC-TCCTCTTAG-AATTCTTCT
8751386 TTTGCAAATC
Statistics
Matches: 80, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
51 6 0.08
52 74 0.93
ACGTcount: A:0.27, C:0.24, G:0.07, T:0.41
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCCCTCTCCTCTTAGAATTCTTCTCTTACAAGT
Found at i:8762317 original size:18 final size:19
Alignment explanation
Indices: 8762283--8762321 Score: 62
Period size: 18 Copynumber: 2.1 Consensus size: 19
8762273 ATAATTATTA
8762283 AATTATATAACTAAATTTT
1 AATTATATAACTAAATTTT
*
8762302 AATTAT-TAATTAAATTTT
1 AATTATATAACTAAATTTT
8762320 AA
1 AA
8762322 AATAAAGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 13 0.68
19 6 0.32
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (19 bp):
AATTATATAACTAAATTTT
Found at i:8763548 original size:233 final size:231
Alignment explanation
Indices: 8762951--8763631 Score: 495
Period size: 233 Copynumber: 2.9 Consensus size: 231
8762941 AAGAAGAATA
* * * * **
8762951 ATAAAATTTA-TATCATTTAGCGTAAAATATGTTAGAAGTATCATAAC--ACTTAAAAAAGAATT
1 ATAAAA-TTAGTATCATTTAGTGTAAAATAGGTAAAAAGTATTGTAACATAC-TAAAAAAG--TT
* * * * ** *
8763013 ATGATAATTTTAAACTTAAT-GAAATGTAAGAATAACTATAAAAAATA-TATCGTAATATAAATA
62 ATGACAATTTTAAACATAATAGAAA-GTAAAAACAACTATAAAAAATATTATTATAACATAAATA
* * * * * *
8763076 ATTAAGAT-ATCATTGTAAAATTTTAATTAATTATTA-TTTTGATAAATAAATAAAAAAATATCT
126 ATTATGTTGA-CAATATAAAATTTTAATTAATTATTATTTTTG-TAAATATATAAAAAAATAGCT
* * * * * * * *
8763139 AATAAA-TAAAAACATATATAGATAACATGAATAACTGAGAGGAAAT
189 AA-AAATTAAAAA-A-AAATTGATAACATAAACAAGTGTGA-AAAAC
* * * * * * * ** * * **
8763185 GTAATATTCA-CATCAATTAGCGTAAAATGGGTAAGAAA-TGTCATAACACAATAACAAATAACT
1 ATAAAATT-AGTATCATTTAGTGTAAAATAGGTAA-AAAGTATTGTAACATACTAA-AAA-AGTT
* * * * * * **
8763248 ATAACAATTCTAAATATATTAG-AAGTAAGAAAAAAC-ATAAAATATATTATTATAAGGTAAATA
62 ATGACAATTTTAAACATAATAGAAAGTAA-AAACAACTATAAAAAATATTATTATAACATAAATA
* * * *
8763311 ATTATGATGGCAATATAAATTTTTAATTAATTATTATTTTTGTATATATATAAATAAAATAGCTA
126 ATTATGTTGACAATATAAAATTTTAATTAATTATTATTTTTGTAAATATATAAA-AAAATAGCTA
* *
8763376 TAAATTAAAAAAAAATTGATAACATTAACAAGTGTGAAAAAC
190 AAAATTAAAAAAAAATTGATAACATAAACAAGTGTGAAAAAC
* * *
8763418 ATAAAATTAGTGTCATTTAGTGTAAAATAGGTAAAAAGTATTGTAACACACTAAAAAAGTTATTA
1 ATAAAATTAGTATCATTTAGTGTAAAATAGGTAAAAAGTATTGTAACATACTAAAAAAGTTATGA
* * *
8763483 GAATTTTAAACATAATAGAAAGTAAAAACAACCATAAGAAAATATTATTATAATATAAATAATTA
66 CAATTTTAAACATAATAGAAAGTAAAAACAACTATAA-AAAATATTATTATAACATAAATAATTA
* * * **
8763548 TGTTGATAATATAAAATTTTAACTAATTATTATTTTTTTAAATATATAAAGAAAATAAATAAAAA
130 TGTTGACAATATAAAATTTTAATTAATTATTATTTTTGTAAATATATAAA-AAAATAGCTAAAAA
* *
8763613 TTGAAAAACAAATAGATAA
194 TT-AAAAAAAAATTGATAA
8763632 TGTAAAATAA
Statistics
Matches: 351, Mismatches: 77, Indels: 38
0.75 0.17 0.08
Matches are distributed among these distances:
231 25 0.07
232 17 0.05
233 122 0.35
234 78 0.22
235 83 0.24
236 25 0.07
237 1 0.00
ACGTcount: A:0.52, C:0.06, G:0.09, T:0.33
Consensus pattern (231 bp):
ATAAAATTAGTATCATTTAGTGTAAAATAGGTAAAAAGTATTGTAACATACTAAAAAAGTTATGA
CAATTTTAAACATAATAGAAAGTAAAAACAACTATAAAAAATATTATTATAACATAAATAATTAT
GTTGACAATATAAAATTTTAATTAATTATTATTTTTGTAAATATATAAAAAAATAGCTAAAAATT
AAAAAAAAATTGATAACATAAACAAGTGTGAAAAAC
Found at i:8764109 original size:233 final size:228
Alignment explanation
Indices: 8763701--8764541 Score: 645
Period size: 233 Copynumber: 3.6 Consensus size: 228
8763691 AGCATATTAT
* * * * * * * *
8763701 AATTTTAAACATAATTAAAGGTAAGAACAATTATAAAAATAAACTATTATAACGTAAATAATTA-
1 AATTTTAAACATAATGAAAAGTAAAAACAACTATAAAAATATATTATTGTAACATAAATAATTAT
* * *
8763765 AGTTG-TCAATATAAAATTTT--TTAATAAATTATTTTTTAAACATATAAGAAAAATAGTTAAAA
66 A-TTGAT-AATAT-AAATTTTAATTAAT-TATTA-TTTTTAAATATATAAGAAAAATA-CTAAAA
* * * * * * *
8763827 ATTAAAAAATATATTGGTAATA-TAAATACGTGAGAAAAAAGATAAAATTAGTATCATCTAGCGT
125 ATTAAAAAATAAATAGATAA-AGTAAATAAGTGAG--GAAACATAAAATTAATATCAT-TAGCGT
* * *
8763891 -AAATTTGATATAAAA-TGTTGTAATATGCTAAATAGTATTATAA
186 AAAATTTG-TA-AAAAGTGTTGTAAAATACTAAAAAGTATTATAA
* * * **
8763934 CAATTTTAAACGTAATGAAAAGTAAAAATAACTATAATAATATATTATTGTAATGTAAATAATTA
1 -AATTTTAAACATAATGAAAAGTAAAAACAACTATAAAAATATATTATTGTAACATAAATAATTA
* *
8763999 TATTGATAATATAAACTTTTAATTAATTATTGTTTTGCAAATATATAA-AAAATATA-TAAAAAT
65 TATTGATAATATAAA-TTTTAATTAATTATTATTTT-TAAATATATAAGAAAA-ATACTAAAAAT
*
8764062 TAAAAAATAAATAGATAAAGTAAATAAGTGAGCGTAAACATAAAATTAATATCATTAGGCCTAAA
127 TAAAAAATAAATAGATAAAGTAAATAAGTGAG-G-AAACATAAAATTAATATCATTA-GCGTAAA
* * * * *
8764127 ATATGTAAAAAGTGTTGTAACATATTAAAAAATAATTATGAT
189 ATTTGTAAAAAGTGTTGTAAAATACTAAAAAGT-ATTAT-AA
* * *
8764169 AATTTTAAACATAAT-AAAA--AAATAAGTAACTATAAAAAGATATTATTGTAA-AAAAATAATT
1 AATTTTAAACATAATGAAAAGTAAA-AA-CAACTATAAAAATATATTATTGTAACATAAATAATT
* * * *
8764230 ATGTTGACAACTATAAATTTTAATTAATTTTTATTTCTATAGATATATAAGAAAAATAGCTAAAA
64 ATATTGATAA-TATAAATTTTAATTAATTATTATTT-T-TAAATATATAAGAAAAATA-CTAAAA
* * * * * * * *
8764295 A-TAAAAATTAAATTGATAAGGTAAACAAGTGA-GAAACATAAATTTAATATCATTTGATGTGAA
125 ATTAAAAAATAAATAGATAAAGTAAATAAGTGAGGAAACATAAAATTAATATCATTAG-CGTAAA
** * *
8764358 ATGGGTAAAAAGTATTCTAAAATACTAATAAAG-AGTTATGAA
189 ATTTGTAAAAAGTGTTGTAAAATACTAA-AAAGTA-TTAT-AA
* * * * * * *
8764400 AATTATAAACGTAATGGAAGGTAAGAACAACTGTAATAATATATTATTGTAACATAAATAATTAT
1 AATTTTAAACATAATGAAAAGTAAAAACAACTATAAAAATATATTATTGTAACATAAATAATTAT
* * * * *
8764465 GTTGGTAATTTAAAGTTTTAACTAATTATTATTTTTTAAATATATAA-AGAATATAACTAAAAAT
66 ATTGATAATATAAA-TTTTAATTAATTATTA-TTTTTAAATATATAAGA-AAAAT-ACTAAAAAT
* *
8764529 TGAAAAACAAATA
127 TAAAAAATAAATA
8764542 TGTAATGTAA
Statistics
Matches: 493, Mismatches: 81, Indels: 67
0.77 0.13 0.10
Matches are distributed among these distances:
230 2 0.00
231 68 0.14
232 95 0.19
233 165 0.33
234 134 0.27
235 24 0.05
236 5 0.01
ACGTcount: A:0.51, C:0.05, G:0.10, T:0.34
Consensus pattern (228 bp):
AATTTTAAACATAATGAAAAGTAAAAACAACTATAAAAATATATTATTGTAACATAAATAATTAT
ATTGATAATATAAATTTTAATTAATTATTATTTTTAAATATATAAGAAAAATACTAAAAATTAAA
AAATAAATAGATAAAGTAAATAAGTGAGGAAACATAAAATTAATATCATTAGCGTAAAATTTGTA
AAAAGTGTTGTAAAATACTAAAAAGTATTATAA
Found at i:8764446 original size:232 final size:231
Alignment explanation
Indices: 8763001--8765293 Score: 818
Period size: 235 Copynumber: 9.8 Consensus size: 231
8762991 TCATAACACT
* * * * *
8763001 TAAAAAAGAATTATGATAATTTTAAACTTAATGAAATGTAAGAATAACTATAA-AAAATA-TATC
1 TAAAAAAGAATTATGAAAATTTTAAACGTAATGAAA-GTAAAAATAACTATAATAATATATTATT
* * * * * * *
8763064 GTAATATAAATAATTAAGAT-ATCATTGTAAAATTTTAATTAATTATTATTTTGATAAATAAATA
65 GTAACATAAATAATTATGTTGAT-AATATAAACTTTTAATTAATTATTATTTT-ATAAATATATA
* * * * * * ** *
8763128 AAAAAATATCTAATAAATAAAAACATATATAGATAACA-TGAATAACTGAGAGGAAATGTAATAT
128 AAAAAATA-CTAA-AAATAAAAA-ATAAATAGATAA-AGTAAACAAGTGA-CGTAAACATAAAAT
* * * * * * * *
8763192 TCACATCAATTAG-CGTAAAATGGGTAAGAAA-T-GTCATAACACAA
188 TAATATC-ATTAGACCTAAAATAGGTAA-AAAGTATTC-TAAAATAC
* * * * * *
8763236 TAACAAATAACTAT-AACAATTCTAAA--TATATTAGAAGTAAGAAAAAAC-ATAA-AATATATT
1 TAAAAAAGAATTATGAA-AATTTTAAACGTA-ATGA-AAGTAA-AAATAACTATAATAATATATT
* ** * ** * * *
8763296 ATTATAAGGTAAATAATTATGATGGCAATATAAATTTTTAATTAATTATTATTTTTGTATATATA
62 ATTGTAACATAAATAATTATGTTGATAATATAAACTTTTAATTAATTATTA-TTTTATAAATATA
* * * * *
8763361 TAAATAAAATAGCTATAAATTAAAAAA-AAATTGATAACA-TTAACAAGTG-TGAAAAACATAAA
126 TAAA-AAAATA-CTA-AAAATAAAAAATAAATAGATAA-AGTAAACAAGTGACG-TAAACATAAA
* * ** * * *
8763423 ATTAGTGTCATTTAG-TGTAAAATAGGTAAAAAGTATTGTAACACAC
186 ATTAATATCA-TTAGACCTAAAATAGGTAAAAAGTATTCTAAAATAC
* * * * * * *
8763469 TAAAAAAG--TTATTAGAATTTTAAACATAATAGAAAGTAAAAACAACCATAAGAAAATATTATT
1 TAAAAAAGAATTATGAAAATTTTAAACGTAAT-GAAAGTAAAAATAACTATAATAATATATTATT
* * * * *
8763532 ATAATATAAATAATTATGTTGATAATATAAAATTTTAACTAATTATTATTTTTTTAAATATATAA
65 GTAACATAAATAATTATGTTGATAATATAAACTTTTAATTAATTATTA-TTTTATAAATATATAA
* * ** *
8763597 AGAAA-A-T--AAAT-AAAAAT---T-G---AA--AAACAAAT-A-G-ATAATGTAAAATAAATA
129 AAAAATACTAAAAATAAAAAATAAATAGATAAAGTAAACAAGTGACGTA-AACATAAAATTAATA
** * * ** * *
8763645 TCATTTA-ATGTAAAAT-TGAAAAAAGTATCATAACATAT
193 TCA-TTAGACCTAAAATAGGTAAAAAGTATTCTAAAATAC
* * * * * * * * * *
8763683 TAAAAAAGAGCA-TATTATAATTTTAAACATAATTAAAGGTAAGAACAATTATAAAAATAAACTA
1 TAAAAAAGA--ATTATGAAAATTTTAAACGTAATGAAA-GTAAAAATAACTATAATAATATATTA
* * * * * * *
8763747 TTATAACGTAAATAATTAAGTTG-TCAATATAAAATTTT--TTAATAAATTATTTTTTAAACATA
63 TTGTAACATAAATAATTATGTTGAT-AATATAAACTTTTAATTAAT-TATTATTTTATAAATATA
* * * * * * * *
8763809 TAAGAAAAATAGTTAAAAATTAAAAAATATATTGGTAATA-TAAATACGTGA-GAAAAAAGATAA
126 TAA-AAAAATA-CTAAAAA-TAAAAAATAAATAGATAA-AGTAAACAAGTGACG--TAAACATAA
* * * * * * * * *
8763872 AATTAGTATCATCTAG-CGTAAATTTGATATAAAA-TGTTGTAATATGC
185 AATTAATATCAT-TAGACCTAAAATAGGTA-AAAAGTATTCTAAAATAC
* *
8763919 T-AAATAGTATTAT-AACAATTTTAAACGTAATGAAAAGTAAAAATAACTATAATAATATATTAT
1 TAAAAAAGAATTATGAA-AATTTTAAACGTAATG-AAAGTAAAAATAACTATAATAATATATTAT
** * * **
8763982 TGTAATGTAAATAATTATATTGATAATATAAACTTTTAATTAATTATTGTTTTGCAAATATATAA
64 TGTAACATAAATAATTATGTTGATAATATAAACTTTTAATTAATTATTATTTTATAAATATATAA
*
8764047 AAAATATA-TAAAAATTAAAAAATAAATAGATAAAGTAAATAAGTGAGCGTAAACATAAAATTAA
129 AAAA-ATACTAAAAA-TAAAAAATAAATAGATAAAGTAAACAAGTGA-CGTAAACATAAAATTAA
* * * * * *
8764111 TATCATTAGGCCTAAAATATGTAAAAAGTGTTGTAACATAT
191 TATCATTAGACCTAAAATAGGTAAAAAGTATTCTAAAATAC
* * * * * *
8764152 TAAAAAATAATTATGATAATTTTAAACATAAT-AAA-AAAATAAGTAACTATAAAAAGATATTAT
1 TAAAAAAGAATTATGAAAATTTTAAACGTAATGAAAGTAAA-AA-TAACTATAATAATATATTAT
* * * *
8764215 TGTAA-AAAAATAATTATGTTGACAACTATAAA-TTTTAATTAATTTTTATTTCTATAGATATAT
64 TGTAACATAAATAATTATGTTGATAA-TATAAACTTTTAATTAATTATTATTT-TATAAATATAT
* * * *
8764278 AAGAAAAATAGCTAAAAATAAAAATTAAATTGATAAGGTAAACAAGTGA-G-AAACATAAATTTA
127 AA-AAAAATA-CTAAAAATAAAAAATAAATAGATAAAGTAAACAAGTGACGTAAACATAAAATTA
* ** * *
8764341 ATATCATTTGATGTGAAATGGGTAAAAAGTATTCTAAAATAC
190 ATATCATTAGACCTAAAATAGGTAAAAAGTATTCTAAAATAC
* * * * * * *
8764383 TAATAAAGAGTTATGAAAATTATAAACGTAATGGAAGGTAAGAACAACTGTAATAATATATTATT
1 TAAAAAAGAATTATGAAAATTTTAAACGTAAT-GAAAGTAAAAATAACTATAATAATATATTATT
* * * * *
8764448 GTAACATAAATAATTATGTTGGTAATTTAAAGTTTTAACTAATTATTATTTTTTAAATATATAAA
65 GTAACATAAATAATTATGTTGATAATATAAACTTTTAATTAATTATTATTTTATAAATATATAAA
* * * * * ***
8764513 GAATATAACTAAAAATTGAAAAACAAATATG-TAATGTAAA-ATGGTGAAAAAAAAAACATAAAA
130 -AAAAT-ACTAAAAA-TAAAAAATAAATA-GATAAAGTAAACA-AGTG---ACGTAAACATAAAA
* * * * * *
8764576 TTAGTATACTTTAGA-ATAAAA-AGAGTAAAAA-AATATCATAACATAT
187 TTAATAT-CATTAGACCTAAAATAG-GTAAAAAGTAT-TC-TAAAATAC
* * * ** * * * * *
8764622 TGAGAAAAAG--TAATGATAATTCTAAATATAATTAAAGATAAGAATAA-TCATAAAAACGAAAT
1 T-A-AAAAAGAATTATGAAAATTTTAAACGTAATGAAAG-TAAAAATAACT-ATAATAA-TATAT
* * * ** * * * *
8764684 TATTGTAACGTAAATGATTAAGTTGCCAATGTAAAATTTTAATTATTTATT-TTTTGTAAATATA
61 TATTGTAACATAAATAATTATGTTGATAATATAAACTTTTAATTAATTATTATTTTATAAATATA
* * * * *
8764748 TAAGAAACATAGCTGAAAAACTAGAAAACAAATTA-ATAATA-TAAACAAGTGA-GAAGAAACGT
126 TAA-AAAAATA-CT-AAAAA-TAAAAAATAAA-TAGATAA-AGTAAACAAGTGACG--TAAACAT
* * * ** ** * ** * *
8764810 AAAATTAGTATCATTTGACGTAAAACGGGTATGAATTATGGTAATATGC
183 AAAATTAATATCATTAGACCTAAAATAGGTAAAAAGTATTCTAAAATAC
* * * * * * * *
8764859 TAAAAAA-AGTTATGACAATTCTAAACGTAATAAAAATTAAGAACAACTATAATAACATATTATT
1 TAAAAAAGAATTATGAAAATTTTAAACGTAAT-GAAAGTAAAAATAACTATAATAATATATTATT
* ** * * *
8764923 AG-AATATAAATAATTATACT-AGTAAAATAAAATTTTAATTAATTATTATTTTATAAATATCTA
65 -GTAACATAAATAATTATGTTGA-TAATATAAACTTTTAATTAATTATTATTTTATAAATATATA
* * * *
8764986 AAAATGATAATAAGAAATTAAAAAATAAAATTAG-TAACA-TAAACAAGTGA-G-AATAAATGTA
128 AAAA-AATACTAA-AAA-TAAAAAAT-AAA-TAGATAA-AGTAAACAAGTGACGTAA-ACAT-AA
* * ** * * *
8765047 AATTAGTACCATTTAG-TGTAAAAT-GGATAAAAAGTATTATAATATAT
185 AATTAATATCA-TTAGACCTAAAATAGG-TAAAAAGTATTCTAAAATAC
* * * * * * *
8765094 TAAGAAAGAGTTATGACAATTATAAACATAATGGAAAGTAAAAATAA-TCACAA-AAAATATTAT
1 TAAAAAAGAATTATGAAAATTTTAAACGTAAT-GAAAGTAAAAATAACT-ATAATAATATATTAT
* * * * * * * * * *
8765157 TTTAAAAGT-AGTAATTATGTTGACAATGTAAAATTTTAATTATTTATTATTCCTGTAAATATAA
64 TGTAACA-TAAATAATTATGTTGATAATATAAACTTTTAATTAATTATTATT-TTATAAATATAT
* * * * * ***
8765221 AAAAAAATTAAATAAAATTAAAAAACAAATATATAACGTAAACAAGTGATAAATAACATAAAATT
127 AAAAAAA-T-ACTAAAAATAAAAAATAAATAGATAAAGTAAACAAGTGACGTA-AACATAAAATT
*
8765286 AGTATCAT
189 AATATCAT
8765294 CTGAAAAAAA
Statistics
Matches: 1582, Mismatches: 336, Indels: 281
0.72 0.15 0.13
Matches are distributed among these distances:
214 25 0.02
215 44 0.03
216 13 0.01
217 79 0.05
218 1 0.00
219 2 0.00
221 3 0.00
222 2 0.00
223 7 0.00
225 5 0.00
226 4 0.00
227 1 0.00
229 1 0.00
230 1 0.00
231 92 0.06
232 122 0.08
233 291 0.18
234 189 0.12
235 296 0.19
236 170 0.11
237 30 0.02
238 59 0.04
239 66 0.04
240 71 0.04
241 8 0.01
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (231 bp):
TAAAAAAGAATTATGAAAATTTTAAACGTAATGAAAGTAAAAATAACTATAATAATATATTATTG
TAACATAAATAATTATGTTGATAATATAAACTTTTAATTAATTATTATTTTATAAATATATAAAA
AAATACTAAAAATAAAAAATAAATAGATAAAGTAAACAAGTGACGTAAACATAAAATTAATATCA
TTAGACCTAAAATAGGTAAAAAGTATTCTAAAATAC
Found at i:8764921 original size:475 final size:466
Alignment explanation
Indices: 8763663--8765293 Score: 1316
Period size: 470 Copynumber: 3.5 Consensus size: 466
8763653 TGTAAAATTG
* * *
8763663 AAAAAAGTATCATAACATATTAAAAAAGAGCATATTATAATTTTAAACATAATTAAAGGTAAGAA
1 AAAAAAGTATCATAACATATTAAAAAAGAGTA-ATGATAATTTTAAACATAATTAAAGATAAGAA
* * * * * * * *
8763728 CAATTATAAAAATAAACTATTATAACGTAAATAATTAAGTTGTCAATATAAAATTTTTTAATAAA
65 TAATCATAAAAAGAAATTATTGTAACGTAAATAATTAAGTTGACAATATAAAA--TTTTAATTAT
* * * * * *
8763793 TTA-TTTTTTAAACATATAAGAAAAATAGTTAAAAATTAAAAAATATATTGGTAATATAAATACG
128 TTATTTTTTTAAATATATAAGAAAAATAGCTAAAAA-T-AAAAATAAATTGATAATATAAACAAG
* * * * * *
8763857 TGAGAA-AAAAGATAAAATTAGTATCATCT-AGCGTAAATTTGATATAAAATGTTGTAATATGCT
191 TGAGAAGAAACG-TAAAATTAGTATCATTTGA-CGTAAAATGGGTATAAAATATTGTAATATGCT
** * * * *
8763920 AAATAGTA-TTATAACAATTTTAAACGTAATGAAAAGTAAAAATAACTATAATAATATATTATTG
254 AAA-AAAAGTTATGACAATTATAAACGTAATGAAAAGTAAGAACAACTATAATAATATATTATTG
* * * * **
8763984 TAATGTAAATAATTATATTGATAATATAAACTTTTAATTAATTATTGTTTTGCAAATATATAAAA
318 TAATATAAATAATTATATTGGTAATATAAAATTTTAATTAATTATTATTTTATAAATATATAAAA
* ****
8764049 A-ATATATAAAAATTAAAAAATAAATAGATAAAGTAAATAAGTGAGCGTAAACATAAAATTAATA
383 ATATA-ATAAAAATTAAAAAACAAATAGATAAAGTAAATAAGTGAAAAAAAACATAAAATTAATA
** *
8764113 TCATTAGGCCTAAAATATGT
447 TCATTAGGAATAAAATAAGT
* ** * * * * *
8764133 -AAAAAGTGTTGTAACATATTAAAAAATAATTATGATAATTTTAAACATAA-TAAA-AAAATAAG
1 AAAAAAGTATCATAACATATTAAAAAAGAGTAATGATAATTTTAAACATAATTAAAGATAAGAA-
* ** *
8764195 TAA-CTATAAAAAGATATTATTGTAA-AAAAATAATTATGTTGACAACTAT-AAATTTTAATTAA
65 TAATC-ATAAAAAGAAATTATTGTAACGTAAATAATTAAGTTGACAA-TATAAAATTTTAATT-A
* **
8764257 TTT-TTATTTCTATAGATATATAAGAAAAATAGCTAAAAATAAAAATTAAATTGATAAGGTAAAC
127 TTTATT-TTT-T-TAAATATATAAGAAAAATAGCTAAAAATAAAAA-TAAATTGATAATATAAAC
* * * * * * * *
8764321 AAGT--G-AGAAACATAAATTTAATATCATTTGATGTGAAATGGGTA-AAAAGTATTCTAAAATA
188 AAGTGAGAAGAAACGTAAAATTAGTATCATTTGACGTAAAATGGGTATAAAA-TATTGTAATATG
* * * * *
8764382 CTAATAAAGAGTTATGAAAATTATAAACGTAATGGAAGGTAAGAACAACTGTAATAATATATTAT
252 CTAA-AAAAAGTTATGACAATTATAAACGTAATGAAAAGTAAGAACAACTATAATAATATATTAT
* * * * * *
8764447 TGTAACATAAATAATTATGTTGGTAATTTAAAGTTTTAACTAATTATTATTTTTTAAATATATAA
316 TGTAATATAAATAATTATATTGGTAATATAAAATTTTAATTAATTATTATTTTATAAATATATAA
* * *
8764512 AGAATATAACTAAAAATTGAAAAACAAATATG-TAATGTAAA-ATGGTGAAAAAAAAAACATAAA
381 A-AATATAA-TAAAAATTAAAAAACAAATA-GATAAAGTAAATA-AGTG--AAAAAAAACATAAA
* *
8764575 ATTAGTATACTTTA-GAATAAAA-AGAGT
440 ATTAATAT-CATTAGGAATAAAATA-AGT
* * * *
8764602 AAAAAAATATCATAACATATTGAGAAAA-AGTAATGATAATTCTAAATATAATTAAAGATAAGAA
1 AAAAAAGTATCATAACATATT-AAAAAAGAGTAATGATAATTTTAAACATAATTAAAGATAAGAA
* * *
8764666 TAATCATAAAAACGAAATTATTGTAACGTAAATGATTAAGTTGCCAATGTAAAATTTTAATTATT
65 TAATCATAAAAA-GAAATTATTGTAACGTAAATAATTAAGTTGACAATATAAAATTTTAATTATT
* * *
8764731 TATTTTTTGTAAATATATAAGAAACATAGCTGAAAAACTAGAAAACAAATTAATAATATAAACAA
129 TATTTTTT-TAAATATATAAGAAAAATAGCT-AAAAA-TA-AAAATAAATTGATAATATAAACAA
* * * *
8764796 GTGAGAAGAAACGTAAAATTAGTATCATTTGACGTAAAACGGGTATGAATTATGGTAATATGCTA
190 GTGAGAAGAAACGTAAAATTAGTATCATTTGACGTAAAATGGGTATAAAATATTGTAATATGCTA
* * * *
8764861 AAAAAAGTTATGACAATTCTAAACGTAATAAAAATTAAGAACAACTATAATAACATATTATTAG-
255 AAAAAAGTTATGACAATTATAAACGTAATGAAAAGTAAGAACAACTATAATAATATATTATT-GT
* * * *
8764925 AATATAAATAATTATACTAGTAAAATAAAATTTTAATTAATTATTATTTTATAAATATCTAAAAA
319 AATATAAATAATTATATTGGTAATATAAAATTTTAATTAATTATTATTTTATAAATATATAAAAA
* * * * **
8764990 TGATAATAAGAAATTAAAAAATAAAATTAG-TAACA-TAAACAAGTGAGAATAAATGT-AAATTA
384 T-ATAATAA-AAATTAAAAAA-CAAA-TAGATAA-AGTAAATAAGTGAAAAAAAACATAAAATTA
* * *
8765052 GTACCATTTAGTG--TAAAAT--GG
444 ATATCA-TTAG-GAATAAAATAAGT
* * * * * * * *
8765073 ATAAAAAGTATTATAATATATTAAGAAAGAGTTATGACAATTATAAACATAATGGAAAG-TAAAA
1 A-AAAAAGTATCATAACATATTAAAAAAGAGTAATGATAATTTTAAACATAAT-TAAAGATAAGA
* * * * * * *
8765137 ATAATCACAAAAA-ATATTATTTTAAAAGT-AGTAATTATGTTGACAATGTAAAATTTTAATTAT
64 ATAATCATAAAAAGAAATTATTGT-AACGTAAATAATTAAGTTGACAATATAAAATTTTAATTAT
* * ** * * **
8765200 TTATTATTCCTGTAAATATA-AAAAAAAATTAAATAAAATTAAAAAACAAATAT-ATAACGTAAA
128 TTATT-TT--TTTAAATATATAAGAAAAA-TAGCTAAAAAT-AAAAATAAAT-TGATAATATAAA
* *
8765263 CAAGTGATAA-ATAACATAAAATTAGTATCAT
187 CAAGTGAGAAGA-AACGTAAAATTAGTATCAT
8765294 CTGAAAAAAA
Statistics
Matches: 925, Mismatches: 175, Indels: 122
0.76 0.14 0.10
Matches are distributed among these distances:
463 4 0.00
464 44 0.05
465 112 0.12
466 35 0.04
467 75 0.08
468 44 0.05
469 50 0.05
470 127 0.14
471 64 0.07
472 97 0.10
473 70 0.08
474 17 0.02
475 121 0.13
476 60 0.06
477 5 0.01
ACGTcount: A:0.52, C:0.05, G:0.10, T:0.33
Consensus pattern (466 bp):
AAAAAAGTATCATAACATATTAAAAAAGAGTAATGATAATTTTAAACATAATTAAAGATAAGAAT
AATCATAAAAAGAAATTATTGTAACGTAAATAATTAAGTTGACAATATAAAATTTTAATTATTTA
TTTTTTTAAATATATAAGAAAAATAGCTAAAAATAAAAATAAATTGATAATATAAACAAGTGAGA
AGAAACGTAAAATTAGTATCATTTGACGTAAAATGGGTATAAAATATTGTAATATGCTAAAAAAA
GTTATGACAATTATAAACGTAATGAAAAGTAAGAACAACTATAATAATATATTATTGTAATATAA
ATAATTATATTGGTAATATAAAATTTTAATTAATTATTATTTTATAAATATATAAAAATATAATA
AAAATTAAAAAACAAATAGATAAAGTAAATAAGTGAAAAAAAACATAAAATTAATATCATTAGGA
ATAAAATAAGT
Found at i:8766229 original size:2 final size:2
Alignment explanation
Indices: 8766224--8766253 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
8766214 TTCATTTTGT
8766224 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8766254 CACACACACA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:8767210 original size:4 final size:4
Alignment explanation
Indices: 8767201--8767235 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
8767191 CTCAATTTTC
8767201 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
8767236 AGATTTCTAC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AAAT
Found at i:8769927 original size:35 final size:35
Alignment explanation
Indices: 8769879--8769947 Score: 111
Period size: 35 Copynumber: 2.0 Consensus size: 35
8769869 TATATATGTG
*
8769879 AGTCAGTTATAGGTTTATATCCAGAAAATATTTGA
1 AGTCAGTTATAGGTTTATATCCAAAAAATATTTGA
* *
8769914 AGTCAGTTTTAGGTTTATGTCCAAAAAATATTTG
1 AGTCAGTTATAGGTTTATATCCAAAAAATATTTG
8769948 GTTTATATAT
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (35 bp):
AGTCAGTTATAGGTTTATATCCAAAAAATATTTGA
Found at i:8775003 original size:17 final size:17
Alignment explanation
Indices: 8774981--8775013 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
8774971 GTATAAACTT
8774981 TTTCTCCAAA-ACCCATC
1 TTTCT-CAAATACCCATC
8774998 TTTCTCAAATACCCAT
1 TTTCTCAAATACCCAT
8775014 TTGGAACATA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.30, C:0.36, G:0.00, T:0.33
Consensus pattern (17 bp):
TTTCTCAAATACCCATC
Found at i:8777970 original size:161 final size:159
Alignment explanation
Indices: 8777557--8778589 Score: 943
Period size: 161 Copynumber: 6.4 Consensus size: 159
8777547 GTTATAAGAT
* * *
8777557 AAAAATATAAATTT-ATAATTATTGTTCTATTTTAATAGTTTTGATAGTTTCAATACATGATATT
1 AAAAATATAAATTTGCT-ATTATTGTTCTATTTTAACAG-TTTGATAGCTTCAATACATGATATT
** * * * * * **
8777621 AAACTTATCCAAATTATTGAACTTAG-TTTCACAGTTGACATGTATGAAAAAGTTGTTGTTTACG
64 AAACTT-TTTAAATGATTGAACTTAGTTTTCACAGTTGATATATGTGAAAAAGTTATCATTTACG
* * * * *
8777685 TCTATTTAGGACTTTTTGTGCCGTTAATA-GT
128 TCTGTTTAAGACTTTTTATGCCGTTAAAAGGC
* * * * * *
8777716 TAAAATACAAATTTGCTATTATTGTTTTATTTTAACAATTTGGATAGCTCCAATACATGATACTA
1 AAAAATATAAATTTGCTATTATTGTTCTATTTTAACAGTTT-GATAGCTTCAATACATGATATTA
* * *
8777781 AACTTTTTCAAATGATTGAACATGGTTTTCACAGTTGATATGTGTGAAAAAGTTATCATTTACGT
65 AACTTTTT-AAATGATTGAACTTAGTTTTCACAGTTGATATATGTGAAAAAGTTATCATTTACGT
* * * *
8777846 TTGTTTAAGACTTTTTACGCTGTTAAGAGGC
129 CTGTTTAAGACTTTTTATGCCGTTAAAAGGC
* * * * * *
8777877 AAACATGTAAATTTGTTGTTATTATTCTATTTTAACAGTTTGCATAGCTTCAATACATGACATTA
1 AAAAATATAAATTTGCTATTATTGTTCTATTTTAACAGTTTG-ATAGCTTCAATACATGATATTA
* * * * * * * *
8777942 AACTTATTAGAATAATTAAACTTGGTTTTCACAGTTGATATATGTGAAAAAAGCTAACATTAATG
65 AACTTTTTA-AATGATTGAACTTAGTTTTCACAGTTGATATATGTG-AAAAAGTTATCATTTACG
* * *
8778007 TCTGTGTAAGACTTTTTATGCCATTAAAATG-
128 TCTGTTTAAGACTTTTTATGCCGTTAAAAGGC
* * * *
8778038 TAAAATAGAAATTTGATATTATTGTTTTATTTTAACAGTTTGGATAGCTTCAATACATGATATTA
1 AAAAATATAAATTTGCTATTATTGTTCTATTTTAACAGTTT-GATAGCTTCAATACATGATATTA
* * * ** * *
8778103 AACTTGTTCAAATCATTGAACTT-GGTTTCTATGGTTGATATGTGTG-AAAAGTTATCATTTATG
65 AACTT-TTTAAATGATTGAACTTAGTTTTC-ACAGTTGATATATGTGAAAAAGTTATCATTTACG
* * * * *
8778166 TCTATTTAGGA-TTATTTTTGCTGTTAAAAGAC
128 TCTGTTTAAGACTT-TTTATGCCGTTAAAAGGC
* * **
8778198 AAAAATAAAAATTTGCTATTATTATTCTATTTTAATGGTTTGGAT-GACTTCAATACATGATATT
1 AAAAATATAAATTTGCTATTATTGTTCTATTTTAACAGTTT-GATAG-CTTCAATACATGATATT
* * * * ** *
8778262 AAACTTTTTTGAATGATTGAACGTAGTTTTCGCAATTGATATATGTGAAAAAGTTATTGTTTACC
64 AAAC-TTTTTAAATGATTGAACTTAGTTTTCACAGTTGATATATGTGAAAAAGTTATCATTTACG
* * * *
8778327 TTTGTTTAAGA-TTTTTCAGGCCATTAAAAGGT
128 TCTGTTTAAGACTTTTT-ATGCCGTTAAAAGGC
* * *
8778359 AAAAATATAAATTTACTGTTATTGTTCTATTTTAACAGTTTTGATAGCTTCAATACATGATACTA
1 AAAAATATAAATTTGCTATTATTGTTCTATTTTAACAG-TTTGATAGCTTCAATACATGATATTA
* * * * ** *
8778424 AACTTTTTTGAATGATTGAACTTAGTTTTCACAGTTGACATATGTAAAAAAGTTGTTGTTTACCT
65 AAC-TTTTTAAATGATTGAACTTAGTTTTCACAGTTGATATATGTGAAAAAGTTATCATTTACGT
* * * *
8778489 -TAGTTTAGGACTTTTTTTACCGTTAAAAGTC
129 CT-GTTTAAGACTTTTTATGCCGTTAAAAGGC
* * * * *
8778520 AAAAATATAAAGTTGTTGTTATTGTTCCATTTTAACAGTTTAGATAGCTTCAATACATAATATTA
1 AAAAATATAAATTTGCTATTATTGTTCTATTTTAACAGTTT-GATAGCTTCAATACATGATATTA
8778585 AACTT
65 AACTT
8778590 GTCATTGAAT
Statistics
Matches: 712, Mismatches: 139, Indels: 45
0.79 0.16 0.05
Matches are distributed among these distances:
158 6 0.01
159 103 0.14
160 155 0.22
161 398 0.56
162 50 0.07
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (159 bp):
AAAAATATAAATTTGCTATTATTGTTCTATTTTAACAGTTTGATAGCTTCAATACATGATATTAA
ACTTTTTAAATGATTGAACTTAGTTTTCACAGTTGATATATGTGAAAAAGTTATCATTTACGTCT
GTTTAAGACTTTTTATGCCGTTAAAAGGC
Found at i:8778372 original size:482 final size:480
Alignment explanation
Indices: 8777556--8778592 Score: 1226
Period size: 482 Copynumber: 2.2 Consensus size: 480
8777546 TGTTATAAGA
* * *
8777556 TAAAAATATAAATTT-ATAATTATTGTTCTATTTTAATAGTTTTGATAGTTTCAATACATGATAT
1 TAAAAATATAAATTTGAT-ATTATTGTTCTATTTTAACAGTTTAGATAGCTTCAATACATGATAT
* * * **
8777620 TAAACTTATCCAAATTATTGAACTTAGTTTCACAGTTGACATGTATGAAAAAGTTGTTGTTTACG
65 TAAACTTGTCCAAATCATTGAACTTAGTTTCACAGTTGACATGTATGAAAAAGTTATCATTTACG
* ** * * *
8777685 TCTATTTAGGACTTTTTGTGCCGTTAATAGTTAAAATACAAATTTGCTATTATTGTTTTATTTTA
130 TCTATTTAGGACTTTTTGTGCCGTTAAAAGCAAAAATAAAAATTTGCTATTATTATTCTATTTTA
* *
8777750 ACAATTTGGATAGCTCCAATACATGATACTAAACTTTTTCAAATGATTGAACATGGTTTTCACAG
195 ACAATTTGGATAGCTCCAATACATGATACTAAACTTTTTCAAATGATTGAACATAGTTTTCACAA
* * ** *
8777815 TTGATATGTGTGAAAAAGTTATCATTTACGTTTGTTTAAGACTTTTTACGCTGTTAAGAGGCAAA
260 TTGATATATGTGAAAAAGTTATCATTTACCTTTGTTTAAGACTTTTTACGCCATTAAAAGGCAAA
* * ** *
8777880 CATGTAAATTTGTTGTTATTATTCTATTTTAACAG-TTTGCATAGCTTCAATACATGACATTAAA
325 AATATAAATTTACTGTTATTATTCTATTTTAACAGTTTTG-ATAGCTTCAATACATGACACTAAA
* * **
8777944 CTTATTAGAATAATTAAACTTGGTTTTCACAGTTGATATATGTGAAAAAAGCTAACATTAATGTC
389 CTTATTAGAATAATTAAACTTAGTTTTCACAGTTGACATATGT-AAAAAAGCTAACATTAACCT-
*
8778009 T-GTGTAAGACTTTTTATGCCATTAAAATG
452 TAGTGTAAGACTTTTTATACCATTAAAA-G
* * *
8778038 T-AAAATAGAAATTTGATATTATTGTTTTATTTTAACAGTTTGGATAGCTTCAATACATGATATT
1 TAAAAATATAAATTTGATATTATTGTTCTATTTTAACAGTTTAGATAGCTTCAATACATGATATT
* * ** * * *
8778102 AAACTTGTTCAAATCATTGAACTTGGTTTCTATGGTTGATATGTGTG-AAAAGTTATCATTTATG
66 AAACTTGTCCAAATCATTGAACTTAGTTTC-ACAGTTGACATGTATGAAAAAGTTATCATTTACG
* *
8778166 TCTATTTAGGA-TTATTTTTGCTGTTAAAAGACAAAAATAAAAATTTGCTATTATTATTCTATTT
130 TCTATTTAGGACTT-TTTGTGCCGTTAAAAG-CAAAAATAAAAATTTGCTATTATTATTCTATTT
*** * * ** * *
8778230 TAATGGTTTGGAT-GACTTCAATACATGATATTAAACTTTTTTGAATGATTGAACGTAGTTTTCG
193 TAACAATTTGGATAG-CTCCAATACATGATACTAAACTTTTTCAAATGATTGAACATAGTTTTCA
** *
8778294 CAATTGATATATGTGAAAAAGTTATTGTTTACCTTTGTTTAAGA-TTTTTCAGGCCATTAAAAGG
257 CAATTGATATATGTGAAAAAGTTATCATTTACCTTTGTTTAAGACTTTTT-ACGCCATTAAAAGG
* * *
8778358 TAAAAATATAAATTTACTGTTATTGTTCTATTTTAACAGTTTTGATAGCTTCAATACATGATACT
321 CAAAAATATAAATTTACTGTTATTATTCTATTTTAACAGTTTTGATAGCTTCAATACATGACACT
* * * * * **** *
8778423 AAACTTTTTTGAATGATTGAACTTAGTTTTCACAGTTGACATATGTAAAAAAGTTGTTGTTTACC
386 AAACTTATTAGAATAATTAAACTTAGTTTTCACAGTTGACATATGTAAAAAAGCTAACATTAACC
* * * *
8778488 TTAGTTTAGGACTTTTTTTACCGTTAAAAG
451 TTAGTGTAAGACTTTTTATACCATTAAAAG
* * * * *
8778518 TCAAAAATATAAAGTTGTTGTTATTGTTCCATTTTAACAGTTTAGATAGCTTCAATACATAATAT
1 T-AAAAATATAAATTTGATATTATTGTTCTATTTTAACAGTTTAGATAGCTTCAATACATGATAT
8778583 TAAACTTGTC
65 TAAACTTGTC
8778593 ATTGAATTTG
Statistics
Matches: 465, Mismatches: 80, Indels: 20
0.82 0.14 0.04
Matches are distributed among these distances:
480 5 0.01
481 157 0.34
482 299 0.64
483 4 0.01
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (480 bp):
TAAAAATATAAATTTGATATTATTGTTCTATTTTAACAGTTTAGATAGCTTCAATACATGATATT
AAACTTGTCCAAATCATTGAACTTAGTTTCACAGTTGACATGTATGAAAAAGTTATCATTTACGT
CTATTTAGGACTTTTTGTGCCGTTAAAAGCAAAAATAAAAATTTGCTATTATTATTCTATTTTAA
CAATTTGGATAGCTCCAATACATGATACTAAACTTTTTCAAATGATTGAACATAGTTTTCACAAT
TGATATATGTGAAAAAGTTATCATTTACCTTTGTTTAAGACTTTTTACGCCATTAAAAGGCAAAA
ATATAAATTTACTGTTATTATTCTATTTTAACAGTTTTGATAGCTTCAATACATGACACTAAACT
TATTAGAATAATTAAACTTAGTTTTCACAGTTGACATATGTAAAAAAGCTAACATTAACCTTAGT
GTAAGACTTTTTATACCATTAAAAG
Found at i:8778383 original size:321 final size:320
Alignment explanation
Indices: 8777546--8778589 Score: 1088
Period size: 321 Copynumber: 3.3 Consensus size: 320
8777536 CTTTTTGTGT
* * * * *
8777546 TGTTATAAGATAAAAATATAAATTT-ATAATTATTGTTCTATTTTAATAGTTTTGATAGTTTCAA
1 TGTTAAAAGACAAAAATATAAATTTGAT-ATTATTATTCTATTTTAATAGTTTGGATAGCTTCAA
* * * * *
8777610 TACATGATATTAAACTTATCCA-AATTATTGAACTTAG-TTTCACAGTTGACATGTATGAAAAAG
65 TACATGATATTAAACTTAT-TAGAATAATTGAACTTAGTTTTCACAGTTGATATATGTGAAAAAG
* * * * * *
8777673 TTGTTGTTTACGTCTATTTAGGACTTTTT-GTGCCGTTAATAGTTAAAATACAAATTTGCTATTA
129 TTATTGTTTACGTCTGTTTAAGACTTTTTAG-GCCATTAAAAG-TAAAATACAAATTTACTATTA
* *
8777737 TTGTTTTATTTTAACAATTTGGATAGCTCCAATACATGATACTAAACTTTTTCAAATGATTGAAC
192 TTGTTTTATTTTAACAGTTTGGATAGCTTCAATACATGATACTAAACTTTTTCAAATGATTGAAC
* * *
8777802 ATGGTTTTCACAGTTGATATGTGTGAAAAAGTTATCATTTACGTTTGTTTAAGACTTTTTACGC
257 TTGGTTTTCACAGTTGATATGTGTGAAAAAGTTATCATTTACGTCTATTTAAGACTTTTTACGC
* * * * * * * *
8777866 TGTTAAGAGGCAAACATGTAAATTTGTTGTTATTATTCTATTTTAACAGTTTGCATAGCTTCAAT
1 TGTTAAAAGACAAAAATATAAATTTGATATTATTATTCTATTTTAATAGTTTGGATAGCTTCAAT
* * * *
8777931 ACATGACATTAAACTTATTAGAATAATTAAACTTGGTTTTCACAGTTGATATATGTGAAAAAAGC
66 ACATGATATTAAACTTATTAGAATAATTGAACTTAGTTTTCACAGTTGATATATGTG-AAAAAGT
*** * * * * *
8777996 TAACATTAATGTCTGTGTAAGACTTTTTATGCCATTAAAATGTAAAATAGAAATTTGA-TATTAT
130 TATTGTTTACGTCTGTTTAAGACTTTTTAGGCCATTAAAA-GTAAAATACAAATTT-ACTATTAT
* * *
8778060 TGTTTTATTTTAACAGTTTGGATAGCTTCAATACATGATATTAAACTTGTTCAAATCATTGAACT
193 TGTTTTATTTTAACAGTTTGGATAGCTTCAATACATGATACTAAACTTTTTCAAATGATTGAACT
** * * **
8778125 TGG-TTTCTATGGTTGATATGTGTG-AAAAGTTATCATTTATGTCTATTTAGGA-TTATTTTTGC
258 TGGTTTTC-ACAGTTGATATGTGTGAAAAAGTTATCATTTACGTCTATTTAAGACTT-TTTACGC
* * *
8778187 TGTTAAAAGACAAAAATAAAAATTTGCTATTATTATTCTATTTTAATGGTTTGGAT-GACTTCAA
1 TGTTAAAAGACAAAAATATAAATTTGATATTATTATTCTATTTTAATAGTTTGGATAG-CTTCAA
* * * * * *
8778251 TACATGATATTAAACTTTTTTGAATGATTGAACGTAGTTTTCGCAATTGATATATGTGAAAAAGT
65 TACATGATATTAAACTTATTAGAATAATTGAACTTAGTTTTCACAGTTGATATATGTGAAAAAGT
* * * *
8778316 TATTGTTTACCTTTGTTTAAGA-TTTTTCAGGCCATTAAAAGGTAAAAATATAAATTTACTGTTA
130 TATTGTTTACGTCTGTTTAAGACTTTTT-AGGCCATTAAAA-GT-AAAATACAAATTTACTATTA
* * **
8778380 TTGTTCTATTTTAACAGTTTTGATAGCTTCAATACATGATACTAAACTTTTTTGAATGATTGAAC
192 TTGTTTTATTTTAACAGTTTGGATAGCTTCAATACATGATACTAAACTTTTTCAAATGATTGAAC
* * * * * ** * *
8778445 TTAGTTTTCACAGTTGACATATGTAAAAAAGTTGTTGTTTACCT-TAGTTTAGGACTTTTTTTAC
257 TTGGTTTTCACAGTTGATATGTGTGAAAAAGTTATCATTTACGTCTA-TTTAAGAC--TTTTTAC
8778509 -C
319 GC
* * * * * * * *
8778510 -GTTAAAAGTCAAAAATATAAAGTTGTTGTTATTGTTCCATTTTAACAGTTTAGATAGCTTCAAT
1 TGTTAAAAGACAAAAATATAAATTTGATATTATTATTCTATTTTAATAGTTTGGATAGCTTCAAT
*
8778574 ACATAATATTAAACTT
66 ACATGATATTAAACTT
8778590 GTCATTGAAT
Statistics
Matches: 591, Mismatches: 113, Indels: 38
0.80 0.15 0.05
Matches are distributed among these distances:
319 6 0.01
320 116 0.20
321 242 0.41
322 219 0.37
323 3 0.01
324 3 0.01
325 2 0.00
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.43
Consensus pattern (320 bp):
TGTTAAAAGACAAAAATATAAATTTGATATTATTATTCTATTTTAATAGTTTGGATAGCTTCAAT
ACATGATATTAAACTTATTAGAATAATTGAACTTAGTTTTCACAGTTGATATATGTGAAAAAGTT
ATTGTTTACGTCTGTTTAAGACTTTTTAGGCCATTAAAAGTAAAATACAAATTTACTATTATTGT
TTTATTTTAACAGTTTGGATAGCTTCAATACATGATACTAAACTTTTTCAAATGATTGAACTTGG
TTTTCACAGTTGATATGTGTGAAAAAGTTATCATTTACGTCTATTTAAGACTTTTTACGC
Found at i:8780062 original size:33 final size:33
Alignment explanation
Indices: 8780025--8780131 Score: 85
Period size: 34 Copynumber: 3.2 Consensus size: 33
8780015 ATAAATGCTG
*
8780025 CTAAATAG-AGCGATGTTTTATGATAC-AATGCCA
1 CTAAATAGCAGC-AT-TTTTATAATACAAATGCCA
* *
8780058 CTAAATTAGCAGCATTTTTCTAATACAAATGTCA
1 CTAAA-TAGCAGCATTTTTATAATACAAATGCCA
* * * *
8780092 CTAAATTAGTCA-TATTTTTTTGATACAAATGTCA
1 CTAAA-TAG-CAGCATTTTTATAATACAAATGCCA
8780126 CTAAAT
1 CTAAAT
8780132 TAATGGTGAT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
33 15 0.23
34 44 0.69
35 5 0.08
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.36
Consensus pattern (33 bp):
CTAAATAGCAGCATTTTTATAATACAAATGCCA
Found at i:8780096 original size:34 final size:34
Alignment explanation
Indices: 8780047--8780133 Score: 115
Period size: 34 Copynumber: 2.6 Consensus size: 34
8780037 ATGTTTTATG
*
8780047 ATAC-AATGCCACTAAATTAG-CAGCATTTTTCTA
1 ATACAAATGTCACTAAATTAGTCA-CATTTTTCTA
* * *
8780080 ATACAAATGTCACTAAATTAGTCATATTTTTTTG
1 ATACAAATGTCACTAAATTAGTCACATTTTTCTA
8780114 ATACAAATGTCACTAAATTA
1 ATACAAATGTCACTAAATTA
8780134 ATGGTGATTA
Statistics
Matches: 48, Mismatches: 4, Indels: 3
0.87 0.07 0.05
Matches are distributed among these distances:
33 4 0.08
34 42 0.88
35 2 0.04
ACGTcount: A:0.39, C:0.16, G:0.08, T:0.37
Consensus pattern (34 bp):
ATACAAATGTCACTAAATTAGTCACATTTTTCTA
Done.