Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 43 of 195
Found at i:9030221 original size:9 final size:9
Alignment explanation
Indices: 9030202--9030259 Score: 55
Period size: 9 Copynumber: 6.3 Consensus size: 9
9030192 TTTATTTTTC
*
9030202 TTATTTTTG
1 TTATTTCTG
9030211 TTATTTCTG
1 TTATTTCTG
*
9030220 TTATAGTCTG
1 TTAT-TTCTG
9030230 TTA-TTCTG
1 TTATTTCTG
* *
9030238 CTGTTTCTG
1 TTATTTCTG
9030247 TTAATTTCTG
1 TT-ATTTCTG
9030257 TTA
1 TTA
9030260 CAAGAGGCAG
Statistics
Matches: 39, Mismatches: 7, Indels: 6
0.75 0.13 0.12
Matches are distributed among these distances:
8 5 0.13
9 19 0.49
10 15 0.38
ACGTcount: A:0.14, C:0.10, G:0.14, T:0.62
Consensus pattern (9 bp):
TTATTTCTG
Found at i:9035324 original size:162 final size:160
Alignment explanation
Indices: 9035078--9036193 Score: 763
Period size: 162 Copynumber: 6.9 Consensus size: 160
9035068 ATTAAAGGAT
* * * *
9035078 AAAAATGTAAATATGTAGTTAT-TTTTTGTTTTAATAATTT-GAATAGCTTCAATACATTATATT
1 AAAAATGTAAATATGCATTTATATTTATG-TTTAATAGTTTAG-ATAGCTTCAATACATTATATT
* * * *
9035141 AAACTTGTAT-GAATTATTGAACTTGATTTTCACGGTTGATATGTGTGAAAAGTTACCGTTTATA
64 AAACTTGT-TCAAATGATTGAACTTGATTTTCATGATTGATATGTGTGAAAAGTTACCGTTTATA
* * *
9035205 TCTTTTTAGAACTTTTTTGTGCTATTAAAAGGC
128 TCTATTTAGGACTTTTTTATGCTATTAAAAGGC
* * *
9035238 AAAAAATGTAAATATGCAGTTATATTTATGTTGTAATAGTTTGGATAGCTTAAATACATTATATT
1 -AAAAATGTAAATATGCATTTATATTTATGTT-TAATAGTTTAGATAGCTTCAATACATTATATT
* * **
9035303 AAATTTGTTCAAATGATTGAACTT-AGTTTTCATGATTG--ATGTGAGAAAAAGTTATTGTTTAT
64 AAACTTGTTCAAATGATTGAACTTGA-TTTTCATGATTGATATGTGTG-AAAAGTTACCGTTTAT
* * * * * **
9035365 GTCTGTTTAGCACTTTTTTGTACCGTTAAAAGGC
127 ATCTATTTAGGACTTTTTTATGCTATTAAAAGGC
* * * * *
9035399 CAAAATGCAAAT-TGGCTTTTATTATTT-TGTTTTAATAGTTTAGATAGCTTCAATAAATGATAT
1 AAAAATGTAAATAT-GCATTTA-TATTTATG-TTTAATAGTTTAGATAGCTTCAATACATTATAT
** * * **
9035462 TAAACTTGTTTGAATGATTAAACTT-ACTTTGT-ATG-TTGATATATGTGAAAAGGTTGTCGTTT
63 TAAACTTGTTCAAATGATTGAACTTGA-TTT-TCATGATTGATATGTGTGAAAA-GTTACCGTTT
*
9035524 ATATCTATTTAGGA-TTTTTTATGCTGTTAAAAGGC
125 ATATCTATTTAGGACTTTTTTATGCTATTAAAAGGC
* * * *
9035559 CAAAATGTATATTTATG--TTTATTATTCTAT-TTTAATAGTTTAGATAGTTTCAATACATAATA
1 AAAAATGTA-A-ATATGCATTTA-TATT-TATGTTTAATAGTTTAGATAGCTTCAATACATTATA
* * * * *** * *
9035621 TTAAACTT-ATCTAGATAATTGAACTT-AGTTTTCATAATTGATATGTACAAAAAAATTACCGCT
62 TTAAACTTGTTC-AAATGATTGAACTTGA-TTTTCATGATTGATATGT-GTGAAAAGTTACCGTT
* * * * *
9035684 TATGT-TTTTTGAGGACTTTGTTATGCTATTAAAGGGT
124 TATATCTATTT-AGGACTTTTTTATGCTATTAAAAGGC
* * * * * *
9035721 AAAAATGTCATTTTACATTTATTTTTATGCTTTAATAGTTTAGATAGCTTAAATACATTATATTA
1 AAAAATGTAAATATGCATTTATATTTATG-TTTAATAGTTTAGATAGCTTCAATACATTATATTA
* * * * * *
9035786 AACTT-TTCTGAATGATTGAACTTGGTTTTCATGAATGATATATATGAAAAAGTTACTGTTTATA
65 AACTTGTTC-AAATGATTGAACTTGATTTTCATGATTGATATGTGTG-AAAAGTTACCGTTTATA
* * *
9035850 TCTATTTAGCACTTTTTTGTG-TCGTTAAAAGGC
128 TCTATTTAGGACTTTTTTATGCT-ATTAAAAGGC
* * * *
9035883 CAAAATGCAAATTATG--TTTATTATTCTAT-TTTAACAGTTTAGATAGCTTCAATACATAATAT
1 AAAAATGTAAA-TATGCATTTA-TATT-TATGTTTAATAGTTTAGATAGCTTCAATACATTATAT
* * * * ** * * * *
9035945 TAAATTTATCCAAATGATTGATTAAACTTGATTTCCATGGCTAATATGTGTAAAAATATTATCGT
63 TAAACTTGTTCAAATGATTG----AACTTGATTTTCATGATTGATATGTGTGAAAA-GTTACCGT
* * * * *
9036010 TTATGTCTTTTTAGGACTTTGTTATGCCATTAAAGGGC
123 TTATATCTATTTAGGACTTTTTTATGCTATTAAAAGGC
* * * * * * * * * * *
9036048 AAAAATATAATTTTGCAGTTGTATTTATATTTCAACAATTTAGATAGATTCAATGCATGATATTA
1 AAAAATGTAAATATGCATTTATATTTATGTTT-AATAGTTTAGATAGCTTCAATACATTATATTA
* *
9036113 AACTTG-T-AGAATGATTGAATTTGATTTTCATGATTTGATATGTATGAATAAGTTA-CGATTTA
65 AACTTGTTCA-AATGATTGAACTTGATTTTCATGA-TTGATATGTGTGAA-AAGTTACCG-TTTA
* **
9036175 TTTCTATTTATAACTTTTT
126 TATCTATTTAGGACTTTTT
9036194 GTAACGTTAA
Statistics
Matches: 748, Mismatches: 157, Indels: 99
0.75 0.16 0.10
Matches are distributed among these distances:
159 6 0.01
160 180 0.24
161 190 0.25
162 238 0.32
163 13 0.02
164 11 0.01
165 76 0.10
166 34 0.05
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (160 bp):
AAAAATGTAAATATGCATTTATATTTATGTTTAATAGTTTAGATAGCTTCAATACATTATATTAA
ACTTGTTCAAATGATTGAACTTGATTTTCATGATTGATATGTGTGAAAAGTTACCGTTTATATCT
ATTTAGGACTTTTTTATGCTATTAAAAGGC
Found at i:9035764 original size:322 final size:316
Alignment explanation
Indices: 9035096--9036274 Score: 1046
Period size: 322 Copynumber: 3.6 Consensus size: 316
9035086 AAATATGTAG
* * *
9035096 TTATTTTTTGTTTTAATAATTT-GAATAGCTTCAATACATTATATTAAACTTGTATGAATTATTG
1 TTATTTTTTGTTTTAATAATTTAG-ATAGCTTCAATACATGATATTAAACTTGTTTGAATGATTG
* * *
9035160 AACTTGATTTTCACGGTTGATATGTGTGAAAAGTTACCGTTTATATCTTTTTAGAACTTTTTTGT
65 AACTT-ATTTTCA-TGTTGATATATGTGAAAAGTTA-CGTTTATATCTATTTAGAACTTTTTTGT
* * * * *
9035225 GCTATTAAAAGGCAAAAAATGTAAATATGCAGTTA-TATT-TATGTTGTAATAGTTTGGATAGCT
127 GCTGTTAAAAGGC-CAAAATGTAATTATG--TTTATTATTCTAT-TT-TAATAGTTTAGATAGCT
* * * * * *
9035288 TAAATACATTATATTAAATTTGT-TCAAATGATTGAACTTAGTTTTCATGATTGATGTG-AGAAA
187 TCAATACATAATATTAAATTTATCT-AGATGATTGAACTTAGTTTTCATGATTGATATGTAAAAA
* * * * * * * * * * * *
9035351 AAGTTATTGTTTATGTCTGTTTAGCACTTTTTTGTACCGTTAAAAGGCCAAAATG-CAAATTGGC
251 AAATTATCGTTTATGTCTTTTTAGGACTTTGTTATGCCATTAAAGGGCAAAAATGTC-ATTTTGC
*
9035415 TT
315 AT
* * *
9035417 TTATTATTTTGTTTTAATAGTTTAGATAGCTTCAATAAATGATATTAAACTTGTTTGAATGATTA
1 TTATT-TTTTGTTTTAATAATTTAGATAGCTTCAATACATGATATTAAACTTGTTTGAATGATTG
* * *
9035482 AACTTACTTTGT-ATGTTGATATATGTGAAAAGGTTGTCGTTTATATCTATTTAGGA-TTTTTTA
65 AACTTA-TTT-TCATGTTGATATATGTGAAAA-GTT-ACGTTTATATCTATTTAGAACTTTTTTG
*
9035545 TGCTGTTAAAAGGCCAAAATGTATATTTATGTTTATTATTCTATTTTAATAGTTTAGATAGTTTC
126 TGCTGTTAAAAGGCCAAAATGTA-A-TTATGTTTATTATTCTATTTTAATAGTTTAGATAGCTTC
* * *
9035610 AATACATAATATTAAACTTATCTAGATAATTGAACTTAGTTTTCATAATTGATATGTACAAAAAA
189 AATACATAATATTAAATTTATCTAGATGATTGAACTTAGTTTTCATGATTGATATGTA-AAAAAA
* * * * *
9035675 ATTACCGCTTATGT-TTTTTGAGGACTTTGTTATGCTATTAAAGGGTAAAAATGTCATTTTACAT
253 ATTATCGTTTATGTCTTTTT-AGGACTTTGTTATGCCATTAAAGGGCAAAAATGTCATTTTGCAT
* * * *
9035739 TTATTTTTATGCTTTAATAGTTTAGATAGCTTAAATACATTATATTAAACTT-TTCTGAATGATT
1 TTATTTTT-TGTTTTAATAATTTAGATAGCTTCAATACATGATATTAAACTTGTT-TGAATGATT
* * * *
9035803 GAACTTGGTTTTCATGAATGATATATATGAAAAAGTTACTGTTTATATCTATTTAGCACTTTTTT
64 GAACTT-ATTTTCATG-TTGATATATGTG-AAAAGTTAC-GTTTATATCTATTTAGAACTTTTTT
* *
9035868 GTG-TCGTTAAAAGGCCAAAATGCAAATTATGTTTATTATTCTATTTTAACAGTTTAGATAGCTT
125 GTGCT-GTTAAAAGGCCAAAATG-TAATTATGTTTATTATTCTATTTTAATAGTTTAGATAGCTT
* * * ** * *
9035932 CAATACATAATATTAAATTTATCCAAATGATTGATTAAACTT-GATTTCCATGGCTAATATGTGT
188 CAATACATAATATTAAATTTAT-C-TA-GA-TGATTGAACTTAG-TTTTCATGATTGATATGT-A
* * *
9035996 AAAAATATTATCGTTTATGTCTTTTTAGGACTTTGTTATGCCATTAAAGGGCAAAAATATAATTT
247 AAAAAAATTATCGTTTATGTCTTTTTAGGACTTTGTTATGCCATTAAAGGGCAAAAATGTCATTT
9036061 TGCAGT
312 TGCA-T
* * * * * * *
9036067 TGTA-TTTATATTTCAACAATTTAGATAGATTCAATGCATGATATTAAACTTG-TAGAATGATTG
1 T-TATTTTTTGTTTTAATAATTTAGATAGCTTCAATACATGATATTAAACTTGTTTGAATGATTG
* * * * *
9036130 AATTTGATTTTCATGATTTGATATGTATGAATAAGTTACGATTTATTTCTATTTATAAC-TTTTT
65 AACTT-ATTTTCATG--TTGATATATGTGAA-AAGTTACG-TTTATATCTATTTAGAACTTTTTT
* * * * * *
9036194 GTAAC-GTTAAAAGACAAAAATATAA--AT-TTATAATTATTCTGTTTTAATGGTTTAGATAGCT
125 GT-GCTGTTAAAAGGCCAAAATGTAATTATGTT-T-ATTATTCTATTTTAATAGTTTAGATAGCT
* **
9036255 TCTATTACATTTTATTAAAT
187 TC-AATACATAATATTAAAT
9036275 GTGTCCAATC
Statistics
Matches: 708, Mismatches: 107, Indels: 82
0.79 0.12 0.09
Matches are distributed among these distances:
320 74 0.10
321 60 0.08
322 198 0.28
323 94 0.13
324 59 0.08
325 18 0.03
326 49 0.07
327 144 0.20
328 10 0.01
329 2 0.00
ACGTcount: A:0.33, C:0.09, G:0.14, T:0.44
Consensus pattern (316 bp):
TTATTTTTTGTTTTAATAATTTAGATAGCTTCAATACATGATATTAAACTTGTTTGAATGATTGA
ACTTATTTTCATGTTGATATATGTGAAAAGTTACGTTTATATCTATTTAGAACTTTTTTGTGCTG
TTAAAAGGCCAAAATGTAATTATGTTTATTATTCTATTTTAATAGTTTAGATAGCTTCAATACAT
AATATTAAATTTATCTAGATGATTGAACTTAGTTTTCATGATTGATATGTAAAAAAAATTATCGT
TTATGTCTTTTTAGGACTTTGTTATGCCATTAAAGGGCAAAAATGTCATTTTGCAT
Found at i:9037507 original size:33 final size:33
Alignment explanation
Indices: 9037450--9037570 Score: 122
Period size: 33 Copynumber: 3.7 Consensus size: 33
9037440 CGATGCTAAG
* *
9037450 TTAGTGTCATTTGTGTC-TACAAATGCCGTTAAT
1 TTAGTGGCATTTGTGTCTTA-AAATGTCGTTAAT
* **
9037483 TTAATGGCATTTGTGTCTTAAAATGTTATT-AT
1 TTAGTGGCATTTGTGTCTTAAAATGTCGTTAAT
* * *
9037515 GTTAGTGGCGTTTGTGACTTTAAATGTCGTTAAT
1 -TTAGTGGCATTTGTGTCTTAAAATGTCGTTAAT
*
9037549 TTAGTGGCATTT-TTTCTTAAAA
1 TTAGTGGCATTTGTGTCTTAAAA
9037571 CGTTACTATT
Statistics
Matches: 70, Mismatches: 15, Indels: 7
0.76 0.16 0.08
Matches are distributed among these distances:
32 9 0.13
33 57 0.81
34 4 0.06
ACGTcount: A:0.25, C:0.10, G:0.19, T:0.46
Consensus pattern (33 bp):
TTAGTGGCATTTGTGTCTTAAAATGTCGTTAAT
Found at i:9038208 original size:141 final size:141
Alignment explanation
Indices: 9037954--9038375 Score: 772
Period size: 141 Copynumber: 3.0 Consensus size: 141
9037944 TATTAATTTT
*
9037954 ATAATTTAATATGATATGGCATTTGTATATGACCAATGAGGGTATGTATGCAAAAGTCAATTCTT
1 ATAATTTAATATGATATGGCATTTGTATATGACCAATGAGGGTATGTATGCAAAAATCAATTCTT
* *
9038019 GAATTCTTTCAAACACAGCCTTTTATGGTCTCTATAATTGGATTAATTAAGCCAATACAAAAGGG
66 GAATTCTTTCAAACATAGCCTTTTATGGTCTCTATAGTTGGATTAATTAAGCCAATACAAAAGGG
9038084 CATAACATATG
131 CATAACATATG
* *
9038095 ATAATTTAATATGATATGGCATTTGTATATGACCAATGAGGGTCTATATGCAAAAATCAATTCTT
1 ATAATTTAATATGATATGGCATTTGTATATGACCAATGAGGGTATGTATGCAAAAATCAATTCTT
9038160 GAATTCTTTCAAACATAGCCTTTTATGGTCTCTATAGTTGGATTAATTAAGCCAATACAAAAGGG
66 GAATTCTTTCAAACATAGCCTTTTATGGTCTCTATAGTTGGATTAATTAAGCCAATACAAAAGGG
9038225 CATAACATATG
131 CATAACATATG
*
9038236 ATAATTTAATATGATATGGCATTTGTATATGACCAATAAGGGTATGTATGCAAAAATCAATTCTT
1 ATAATTTAATATGATATGGCATTTGTATATGACCAATGAGGGTATGTATGCAAAAATCAATTCTT
* *
9038301 GAATTCTTTCAAACATAGCCATTTGTGGTCTCTATAGTTGGATTAATTAAGCCAATACAAAAGGG
66 GAATTCTTTCAAACATAGCCTTTTATGGTCTCTATAGTTGGATTAATTAAGCCAATACAAAAGGG
9038366 CATAACATAT
131 CATAACATAT
9038376 ATATATATAT
Statistics
Matches: 271, Mismatches: 10, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
141 271 1.00
ACGTcount: A:0.36, C:0.13, G:0.16, T:0.34
Consensus pattern (141 bp):
ATAATTTAATATGATATGGCATTTGTATATGACCAATGAGGGTATGTATGCAAAAATCAATTCTT
GAATTCTTTCAAACATAGCCTTTTATGGTCTCTATAGTTGGATTAATTAAGCCAATACAAAAGGG
CATAACATATG
Found at i:9038379 original size:2 final size:2
Alignment explanation
Indices: 9038372--9038397 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
9038362 AGGGCATAAC
9038372 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
9038398 TTGAGATTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9039882 original size:19 final size:18
Alignment explanation
Indices: 9039854--9039889 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
9039844 TCTGATCGAA
9039854 AAACTCGTCGAAAAATTC
1 AAACTCGTCGAAAAATTC
9039872 AAACTTCGTCGAAAAATT
1 AAAC-TCGTCGAAAAATT
9039890 TCATCGAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.44, C:0.19, G:0.11, T:0.25
Consensus pattern (18 bp):
AAACTCGTCGAAAAATTC
Found at i:9040266 original size:16 final size:17
Alignment explanation
Indices: 9040247--9040292 Score: 69
Period size: 17 Copynumber: 2.8 Consensus size: 17
9040237 TATATATATT
9040247 AATAGATAACA-AAAA-A
1 AATAGATAA-ATAAAAGA
9040263 AATAGATAAATAAAAGA
1 AATAGATAAATAAAAGA
9040280 AATAGATAAATAA
1 AATAGATAAATAA
9040293 TAATAAAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 1 0.04
16 13 0.46
17 14 0.50
ACGTcount: A:0.72, C:0.02, G:0.09, T:0.17
Consensus pattern (17 bp):
AATAGATAAATAAAAGA
Found at i:9040718 original size:41 final size:41
Alignment explanation
Indices: 9040670--9040760 Score: 128
Period size: 41 Copynumber: 2.2 Consensus size: 41
9040660 CATAACCTTG
*
9040670 AAAATAAATGGCTCCCCTAATCAGAGGCTCAACGACTTTAA
1 AAAATAAATGGCTCCCCTAATCAAAGGCTCAACGACTTTAA
* ** * *
9040711 AAAATAAACGGCTCTTCTAATCAAAGGTTCAACGACTTTGA
1 AAAATAAATGGCTCCCCTAATCAAAGGCTCAACGACTTTAA
9040752 AAAATAAAT
1 AAAATAAAT
9040761 AAATTCTCTA
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.43, C:0.20, G:0.13, T:0.24
Consensus pattern (41 bp):
AAAATAAATGGCTCCCCTAATCAAAGGCTCAACGACTTTAA
Found at i:9040849 original size:41 final size:41
Alignment explanation
Indices: 9040791--9040971 Score: 188
Period size: 41 Copynumber: 4.4 Consensus size: 41
9040781 CCATGACTTC
* *
9040791 AAAAATAAA-TGCTCCTCTAAACAAAGGCACCACAACTTTG
1 AAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
* * * ** *
9040831 AAATGTAAATTGCTCCTCTAAATAGAGGAAACCATTATTTTG
1 AAAAGTAAATTGCTCCTCTAAACAGAGG-CACCACAACTTTG
9040873 AAAAAG-AAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
1 -AAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
* * ** * *
9040914 AAAAGTAAATTGCTCATCTAAATAGAGATAACAGAACTTTGG
1 AAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTT-G
9040956 AAAA-TAAATTGCTCCT
1 AAAAGTAAATTGCTCCT
9040972 TAACAATCAT
Statistics
Matches: 115, Mismatches: 21, Indels: 9
0.79 0.14 0.06
Matches are distributed among these distances:
40 12 0.10
41 64 0.56
42 35 0.30
43 4 0.03
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.25
Consensus pattern (41 bp):
AAAAGTAAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
Found at i:9040959 original size:83 final size:83
Alignment explanation
Indices: 9040791--9040971 Score: 253
Period size: 83 Copynumber: 2.2 Consensus size: 83
9040781 CCATGACTTC
* *
9040791 AAAAATAAA-TGCTCCTCTAAACAAAGGCACCACAACTTTGAAATGTAAATTGCTCCTCTAAATA
1 AAAAATAAATTGCTCCTCTAAACAAAGGCACCACAACTTTGAAAAGTAAATTGCTCATCTAAATA
** *
9040855 GAGGAAACCATTATTTTG
66 GAGGAAACCAGAATTTGG
* *
9040873 AAAAAGAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGAAAAGTAAATTGCTCATCTAAATA
1 AAAAATAAATTGCTCCTCTAAACAAAGGCACCACAACTTTGAAAAGTAAATTGCTCATCTAAATA
9040938 GA-GATAA-CAGAACTTTGG
66 GAGGA-AACCAGAA-TTTGG
9040956 -AAAATAAATTGCTCCT
1 AAAAATAAATTGCTCCT
9040972 TAACAATCAT
Statistics
Matches: 88, Mismatches: 8, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
82 28 0.32
83 60 0.68
ACGTcount: A:0.43, C:0.19, G:0.13, T:0.25
Consensus pattern (83 bp):
AAAAATAAATTGCTCCTCTAAACAAAGGCACCACAACTTTGAAAAGTAAATTGCTCATCTAAATA
GAGGAAACCAGAATTTGG
Found at i:9041307 original size:44 final size:44
Alignment explanation
Indices: 9041246--9041350 Score: 126
Period size: 43 Copynumber: 2.4 Consensus size: 44
9041236 TTCAAGGCTT
* *
9041246 TTCAAAGGTTCTCATTTGGCAAACTTGGA-ATTCATATCCAAAAA
1 TTCAAAGCTTCTCATTTGG-AAACTTGGAGATTCACATCCAAAAA
* **
9041290 -TCTAAAGCTTTTCATTT-GAATTTTGGAGATTCACATCCAAAAA
1 TTC-AAAGCTTCTCATTTGGAAACTTGGAGATTCACATCCAAAAA
9041333 TTCAAAGCTTCTCATTTG
1 TTCAAAGCTTCTCATTTG
9041351 AGTTCAAAGG
Statistics
Matches: 51, Mismatches: 6, Indels: 8
0.78 0.09 0.12
Matches are distributed among these distances:
42 7 0.14
43 30 0.59
44 14 0.27
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.36
Consensus pattern (44 bp):
TTCAAAGCTTCTCATTTGGAAACTTGGAGATTCACATCCAAAAA
Found at i:9041582 original size:22 final size:21
Alignment explanation
Indices: 9041535--9041593 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 21
9041525 GGTTTCACTC
9041535 CTCAAAGATTCTCATTTTGAAA
1 CTCAAAGATTCTCA-TTTGAAA
**
9041557 CTCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGA-AA
*
9041579 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
9041594 CAAAATATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
21 5 0.15
22 28 0.85
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.37
Consensus pattern (21 bp):
CTCAAAGATTCTCATTTGAAA
Found at i:9042762 original size:25 final size:25
Alignment explanation
Indices: 9042734--9042786 Score: 63
Period size: 25 Copynumber: 2.1 Consensus size: 25
9042724 AATTTGAGTC
*
9042734 TTTCT-TTTTCTTCCTTTCATCTTTT
1 TTTCTCTTTTCTTACTTTC-TCTTTT
* *
9042759 TTTCTCTTTTTTTATTTTCTCTTTT
1 TTTCTCTTTTCTTACTTTCTCTTTT
9042784 TTT
1 TTT
9042787 TTTCTTTTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 14 0.58
26 10 0.42
ACGTcount: A:0.04, C:0.19, G:0.00, T:0.77
Consensus pattern (25 bp):
TTTCTCTTTTCTTACTTTCTCTTTT
Found at i:9042778 original size:15 final size:15
Alignment explanation
Indices: 9042758--9042786 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
9042748 TTTCATCTTT
9042758 TTTTCTCTTTTTTTA
1 TTTTCTCTTTTTTTA
9042773 TTTTCTCTTTTTTT
1 TTTTCTCTTTTTTT
9042787 TTTCTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.03, C:0.14, G:0.00, T:0.83
Consensus pattern (15 bp):
TTTTCTCTTTTTTTA
Found at i:9042804 original size:7 final size:7
Alignment explanation
Indices: 9042794--9042821 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
9042784 TTTTTTCTTT
9042794 TTTCACC
1 TTTCACC
9042801 TTTCACC
1 TTTCACC
9042808 TTTCACC
1 TTTCACC
9042815 TTTCACC
1 TTTCACC
9042822 ATTTTCTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.43, G:0.00, T:0.43
Consensus pattern (7 bp):
TTTCACC
Found at i:9044201 original size:16 final size:16
Alignment explanation
Indices: 9044180--9044215 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
9044170 TTTATGCAGT
9044180 TATTATAATATAATAA
1 TATTATAATATAATAA
* *
9044196 TATTATATTATAATAT
1 TATTATAATATAATAA
9044212 TATT
1 TATT
9044216 TTTATTATAA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (16 bp):
TATTATAATATAATAA
Found at i:9046030 original size:17 final size:17
Alignment explanation
Indices: 9046008--9046068 Score: 72
Period size: 17 Copynumber: 3.6 Consensus size: 17
9045998 TATATATATT
9046008 AATAGATAACA-AAAAAA
1 AATAGATAA-ATAAAAAA
*
9046025 AATAGATAAATAAAAGA
1 AATAGATAAATAAAAAA
*
9046042 AATAGATAAATAATAATA
1 AATAGATAAATAA-AAAA
9046060 AATA-ATAAA
1 AATAGATAAA
9046069 AGCAGATAAA
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
16 1 0.03
17 32 0.80
18 7 0.17
ACGTcount: A:0.72, C:0.02, G:0.07, T:0.20
Consensus pattern (17 bp):
AATAGATAAATAAAAAA
Found at i:9046061 original size:27 final size:27
Alignment explanation
Indices: 9046025--9046094 Score: 79
Period size: 27 Copynumber: 2.5 Consensus size: 27
9046015 AACAAAAAAA
*
9046025 AATAGATAAATAA-AAGAAATAGATAAAT
1 AATA-ATAAATAATAA-AAACAGATAAAT
*
9046053 AATAATAAATAATAAAAGCAGATAAAT
1 AATAATAAATAATAAAAACAGATAAAT
*
9046080 AATAAAAAATTAATA
1 AATAATAAA-TAATA
9046095 GATAAAATAA
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
27 26 0.70
28 11 0.30
ACGTcount: A:0.69, C:0.01, G:0.07, T:0.23
Consensus pattern (27 bp):
AATAATAAATAATAAAAACAGATAAAT
Found at i:9046512 original size:41 final size:41
Alignment explanation
Indices: 9046467--9046749 Score: 170
Period size: 41 Copynumber: 6.9 Consensus size: 41
9046457 ATGGCTCCCC
* *
9046467 TAATCAGAGGCTCAACGACTTTGAAAAATAAATGGCTCTTA
1 TAATCAGAGGCACAACGACTTTGAAAAATAAATTGCTCTTA
* ** * ***
9046508 TAATCAAAGGTTCAACGACTTTGGAAAATAAATAAATTCTT-
1 TAATCAGAGGCACAACGACTTTGAAAAATAAAT-TGCTCTTA
* * * * * *
9046549 TAAGCAGAAGCACCATGAC-TTCAAAAATAAA-TGCTCTTC
1 TAATCAGAGGCACAACGACTTTGAAAAATAAATTGCTCTTA
* * * **
9046588 TAAACAGAGGCACTACAACTTTGAAACGTAAATTGCTCCTCTA
1 TAATCAGAGGCACAACGACTTTGAAAAATAAATTGCT-CT-TA
* * * * *
9046631 -AAT-AGAGGCAACCATGATTTTGAAAAATAAATTGCTCCTC
1 TAATCAGAGGC-ACAACGACTTTGAAAAATAAATTGCTCTTA
* * * *
9046671 TAAACAGAGGCACCACAACTTTGAAAAGTAAATTGCTCCTCTA
1 TAATCAGAGGCACAACGACTTTGAAAAATAAATTGCT-CT-TA
9046714 -AAT-AGAGG--CAACAGAACTTTGAAAAATAAATTGCTC
1 TAATCAGAGGCACAAC-G-ACTTTGAAAAATAAATTGCTC
9046750 CTTAACAATC
Statistics
Matches: 182, Mismatches: 47, Indels: 27
0.71 0.18 0.11
Matches are distributed among these distances:
38 4 0.02
39 17 0.09
40 21 0.12
41 101 0.55
42 37 0.20
43 2 0.01
ACGTcount: A:0.41, C:0.19, G:0.14, T:0.26
Consensus pattern (41 bp):
TAATCAGAGGCACAACGACTTTGAAAAATAAATTGCTCTTA
Found at i:9046674 original size:83 final size:82
Alignment explanation
Indices: 9046571--9046751 Score: 294
Period size: 83 Copynumber: 2.2 Consensus size: 82
9046561 CCATGACTTC
* * *
9046571 AAAAATAAA-TGCTCTTCTAAACAGAGGCACTACAACTTTGAAACGTAAATTGCTCCTCTAAATA
1 AAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGAAAAGTAAATTGCTCCTCTAAATA
*
9046635 GAGGCAACCATG-ATTTTG
66 GAGGCAA-CA-GAACTTTG
9046653 AAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGAAAAGTAAATTGCTCCTCTAAATA
1 AAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGAAAAGTAAATTGCTCCTCTAAATA
9046718 GAGGCAACAGAACTTTG
66 GAGGCAACAGAACTTTG
9046735 AAAAATAAATTGCTCCT
1 AAAAATAAATTGCTCCT
9046752 TAACAATCAT
Statistics
Matches: 93, Mismatches: 4, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
81 1 0.01
82 33 0.35
83 59 0.63
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (82 bp):
AAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACTTTGAAAAGTAAATTGCTCCTCTAAATA
GAGGCAACAGAACTTTG
Found at i:9046750 original size:41 final size:41
Alignment explanation
Indices: 9046571--9046751 Score: 233
Period size: 41 Copynumber: 4.4 Consensus size: 41
9046561 CCATGACTTC
*
9046571 AAAAATAAA-TGCTCTTCTAAACAGAGGC-ACTACAACTTTG
1 AAAAATAAATTGCTCCTCTAAACAGAGGCAAC-ACAACTTTG
** * *
9046611 AAACGTAAATTGCTCCTCTAAATAGAGGCAAC-CATGATTTTG
1 AAAAATAAATTGCTCCTCTAAACAGAGGCAACACA--ACTTTG
*
9046653 AAAAATAAATTGCTCCTCTAAACAGAGGCACCACAACTTTG
1 AAAAATAAATTGCTCCTCTAAACAGAGGCAACACAACTTTG
* * *
9046694 AAAAGTAAATTGCTCCTCTAAATAGAGGCAACAGAACTTTG
1 AAAAATAAATTGCTCCTCTAAACAGAGGCAACACAACTTTG
9046735 AAAAATAAATTGCTCCT
1 AAAAATAAATTGCTCCT
9046752 TAACAATCAT
Statistics
Matches: 121, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
40 9 0.07
41 75 0.62
42 35 0.29
43 2 0.02
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.25
Consensus pattern (41 bp):
AAAAATAAATTGCTCCTCTAAACAGAGGCAACACAACTTTG
Found at i:9047085 original size:44 final size:44
Alignment explanation
Indices: 9047034--9047130 Score: 110
Period size: 43 Copynumber: 2.2 Consensus size: 44
9047024 TTTTCGAAGG
*
9047034 TTCTCATTTGGCAAACTTGGA-ATTCATATCAAAAAA-TCTAAAGC
1 TTCTCATTTGG-AAACTTGGAGATTCACATCAAAAAATTC-AAAGC
* ** *
9047078 TTTTCATTT-GAATTTTGGAGATTCACATCCAAAAATTCAAAGC
1 TTCTCATTTGGAAACTTGGAGATTCACATCAAAAAATTCAAAGC
9047121 TTCTCATTTG
1 TTCTCATTTG
9047131 AGTTCAAAGG
Statistics
Matches: 44, Mismatches: 6, Indels: 6
0.79 0.11 0.11
Matches are distributed among these distances:
42 7 0.16
43 27 0.61
44 10 0.23
ACGTcount: A:0.34, C:0.18, G:0.11, T:0.37
Consensus pattern (44 bp):
TTCTCATTTGGAAACTTGGAGATTCACATCAAAAAATTCAAAGC
Found at i:9047120 original size:43 final size:42
Alignment explanation
Indices: 9047050--9047131 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 42
9047040 TTTGGCAAAC
* *
9047050 TTGGAATTCATATCAAAAAATCTAAAGCTTTTCATTTGAATT
1 TTGGAATTCACATCAAAAAATCTAAAGCTTCTCATTTGAATT
*
9047092 TTGGAGATTCACATCCAAAAAT-TCAAAGCTTCTCATTTGA
1 TTGGA-ATTCACATCAAAAAATCT-AAAGCTTCTCATTTGA
9047132 GTTCAAAGGC
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 6 0.17
43 29 0.83
ACGTcount: A:0.37, C:0.16, G:0.11, T:0.37
Consensus pattern (42 bp):
TTGGAATTCACATCAAAAAATCTAAAGCTTCTCATTTGAATT
Found at i:9047362 original size:22 final size:22
Alignment explanation
Indices: 9047315--9047373 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
9047305 GGTTTCACTC
*
9047315 CTCAAAGATTCTCATTTTAAAA
1 CTCAAAGATTCTCATTTGAAAA
***
9047337 CTCAAAGATTCTCATTTGAGTT
1 CTCAAAGATTCTCATTTGAAAA
*
9047359 CTCAAAAATTCTCAT
1 CTCAAAGATTCTCAT
9047374 CAAAATATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 32 1.00
ACGTcount: A:0.36, C:0.20, G:0.07, T:0.37
Consensus pattern (22 bp):
CTCAAAGATTCTCATTTGAAAA
Found at i:9048556 original size:16 final size:16
Alignment explanation
Indices: 9048537--9048568 Score: 50
Period size: 14 Copynumber: 2.1 Consensus size: 16
9048527 TCCTTTCATC
9048537 TTTTTTTT--CTTTTT
1 TTTTTTTTCCCTTTTT
9048551 TTTTTTTTCCCTTTTT
1 TTTTTTTTCCCTTTTT
9048567 TT
1 TT
9048569 CCTTTTCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.50
16 8 0.50
ACGTcount: A:0.00, C:0.12, G:0.00, T:0.88
Consensus pattern (16 bp):
TTTTTTTTCCCTTTTT
Found at i:9048564 original size:25 final size:26
Alignment explanation
Indices: 9048530--9048590 Score: 88
Period size: 25 Copynumber: 2.4 Consensus size: 26
9048520 TTTTTCCTCC
* * *
9048530 TTTCATCTTTTTTTTCTTTTTTTTTT
1 TTTCACCTTTTTTTCCTTTTCTTTTT
9048556 TTTC-CCTTTTTTTCCTTTTCTTTTT
1 TTTCACCTTTTTTTCCTTTTCTTTTT
9048581 TTTCACCTTT
1 TTTCACCTTT
9048591 CACCTTTCAC
Statistics
Matches: 31, Mismatches: 3, Indels: 2
0.86 0.08 0.06
Matches are distributed among these distances:
25 22 0.71
26 9 0.29
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (26 bp):
TTTCACCTTTTTTTCCTTTTCTTTTT
Found at i:9048591 original size:7 final size:7
Alignment explanation
Indices: 9048581--9048615 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
9048571 TTTTCTTTTT
9048581 TTTCACC
1 TTTCACC
9048588 TTTCACC
1 TTTCACC
9048595 TTTCACC
1 TTTCACC
9048602 TTTCACC
1 TTTCACC
9048609 TTTCACC
1 TTTCACC
9048616 ATTTTTTTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.14, C:0.43, G:0.00, T:0.43
Consensus pattern (7 bp):
TTTCACC
Found at i:9048626 original size:21 final size:20
Alignment explanation
Indices: 9048576--9048626 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 20
9048566 TTTCCTTTTC
9048576 TTTTTTTTCACCTTTCACCT
1 TTTTTTTTCACCTTTCACCT
***
9048596 TTCACCTTTCACCTTTCACCAT
1 TT-TTTTTTCACCTTTCACC-T
9048618 TTTTTTTTC
1 TTTTTTTTC
9048627 TTTTTTCATC
Statistics
Matches: 23, Mismatches: 6, Indels: 3
0.72 0.19 0.09
Matches are distributed among these distances:
20 2 0.09
21 18 0.78
22 3 0.13
ACGTcount: A:0.12, C:0.31, G:0.00, T:0.57
Consensus pattern (20 bp):
TTTTTTTTCACCTTTCACCT
Found at i:9055108 original size:9 final size:8
Alignment explanation
Indices: 9055095--9055132 Score: 51
Period size: 8 Copynumber: 4.8 Consensus size: 8
9055085 AATTTCAAAA
9055095 ATTTTTAT
1 ATTTTTAT
9055103 ATTTTTAT
1 ATTTTTAT
9055111 ACTTTTTAT
1 A-TTTTTAT
*
9055120 GTTTTTA-
1 ATTTTTAT
9055127 ATTTTT
1 ATTTTT
9055133 TCTTTTTGGT
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
7 5 0.19
8 15 0.56
9 7 0.26
ACGTcount: A:0.21, C:0.03, G:0.03, T:0.74
Consensus pattern (8 bp):
ATTTTTAT
Found at i:9055790 original size:19 final size:18
Alignment explanation
Indices: 9055762--9055797 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
9055752 TCTGGCTGGA
9055762 AAACTCGTCGAAAAATTC
1 AAACTCGTCGAAAAATTC
9055780 AAACATCGTCGAAAAATT
1 AAAC-TCGTCGAAAAATT
9055798 TCGTCGGATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 4 0.24
19 13 0.76
ACGTcount: A:0.47, C:0.19, G:0.11, T:0.22
Consensus pattern (18 bp):
AAACTCGTCGAAAAATTC
Found at i:9056168 original size:17 final size:17
Alignment explanation
Indices: 9056145--9056209 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 17
9056135 TAAATATATT
9056145 AATAGATAACA-AAAA-A
1 AATAGATAA-ATAAAAGA
9056161 ATATAGATAAATAAAAGA
1 A-ATAGATAAATAAAAGA
*
9056179 AATAGATAAATAATAA-T
1 AATAGATAAATAA-AAGA
9056196 AATA-ATAAATAAAA
1 AATAGATAAATAAAA
9056210 ACAGATAAAT
Statistics
Matches: 44, Mismatches: 1, Indels: 9
0.81 0.02 0.17
Matches are distributed among these distances:
15 2 0.05
16 10 0.23
17 28 0.64
18 4 0.09
ACGTcount: A:0.71, C:0.02, G:0.06, T:0.22
Consensus pattern (17 bp):
AATAGATAAATAAAAGA
Found at i:9056191 original size:4 final size:4
Alignment explanation
Indices: 9056123--9056289 Score: 50
Period size: 4 Copynumber: 41.8 Consensus size: 4
9056113 AAATTAATCA
* * * *
9056123 AAAT AAAA AAGAT AAAT ATAT TAAT AGAT AACA- AAA- AAAT ATAGAT
1 AAAT AAAT AA-AT AAAT AAAT AAAT AAAT AA-AT AAAT AAAT A-A-AT
* * *
9056169 AAAT AAAAG AAAT AGAT AAAT -AAT -AAT -AAT -AAT AAAT AAAA ACAGAT
1 AAAT -AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT A-A-AT
*
9056216 AAAT -AAT AAA- AATAT TAAT AAAT AAA- ATAA- AAAT AAAT ATATAT
1 AAAT AAAT AAAT AA-AT AAAT AAAT AAAT A-AAT AAAT AAAT A-A-AT
* * * *
9056260 TAAT AAAT AGAC AAAT -AAT AAAA AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAA
9056290 AATAAAAGTC
Statistics
Matches: 122, Mismatches: 24, Indels: 34
0.68 0.13 0.19
Matches are distributed among these distances:
3 27 0.22
4 74 0.61
5 14 0.11
6 7 0.06
ACGTcount: A:0.70, C:0.02, G:0.04, T:0.24
Consensus pattern (4 bp):
AAAT
Found at i:9056204 original size:33 final size:32
Alignment explanation
Indices: 9056145--9056294 Score: 105
Period size: 33 Copynumber: 4.6 Consensus size: 32
9056135 TAAATATATT
*
9056145 AATAGATAACAAAAAAAT-ATAGATAAATAAAAGA
1 AATAGATAA-ATAAAAATAATA-ATAAATAAAA-A
*
9056179 AATAGATAAATAATAATAATAATAAATAAAAA
1 AATAGATAAATAAAAATAATAATAAATAAAAA
* *
9056211 CAGATAAAT-AATAAAAATATTAATAAATAAAATA
1 -A-ATAGATAAATAAAAATAATAATAAATAAAA-A
* *
9056245 AA-A-ATAAAT--ATATATTAATAAATAGACAAA
1 AATAGATAAATAAAAATAATAATAAATA-A-AAA
* *
9056275 TAATAAAAAAATAAAAATAA
1 -AATAGATAAATAAAAATAA
9056295 AAGTCAATTG
Statistics
Matches: 95, Mismatches: 9, Indels: 23
0.75 0.07 0.18
Matches are distributed among these distances:
29 14 0.15
30 4 0.04
31 8 0.08
32 3 0.03
33 44 0.46
34 18 0.19
35 4 0.04
ACGTcount: A:0.71, C:0.02, G:0.04, T:0.23
Consensus pattern (32 bp):
AATAGATAAATAAAAATAATAATAAATAAAAA
Found at i:9056217 original size:17 final size:16
Alignment explanation
Indices: 9056157--9056294 Score: 99
Period size: 17 Copynumber: 8.5 Consensus size: 16
9056147 TAGATAACAA
9056157 AAAAAT-ATAGATAAAT
1 AAAAATAATA-ATAAAT
9056173 AAAAGA-AATAGATAAAT
1 AAAA-ATAATA-ATAAAT
*
9056190 AATAATAATAATAAAT
1 AAAAATAATAATAAAT
*
9056206 AAAAACAGATAA-ATAAT
1 AAAAATA-ATAATA-AAT
*
9056223 AAAAATATTAATAAAT
1 AAAAATAATAATAAAT
*
9056239 -AAAATAAAAATAAAT
1 AAAAATAATAATAAAT
* *
9056254 --ATATATTAATAAAT
1 AAAAATAATAATAAAT
*
9056268 AGACAAATAATAAAAAAAT
1 A-A-AAATAAT-AATAAAT
9056287 AAAAATAA
1 AAAAATAA
9056295 AAGTCAATTG
Statistics
Matches: 98, Mismatches: 13, Indels: 21
0.74 0.10 0.16
Matches are distributed among these distances:
14 11 0.11
15 13 0.13
16 23 0.23
17 38 0.39
18 6 0.06
19 7 0.07
ACGTcount: A:0.71, C:0.01, G:0.04, T:0.24
Consensus pattern (16 bp):
AAAAATAATAATAAAT
Found at i:9056259 original size:29 final size:28
Alignment explanation
Indices: 9056184--9056296 Score: 101
Period size: 29 Copynumber: 4.0 Consensus size: 28
9056174 AAAGAAATAG
* *
9056184 ATAAATAATAATAATAATAAATAAA-AACA
1 ATAAATAATAAAAAT-ATTAATAAATAA-A
9056213 GATAAATAATAAAAATATTAATAAATAAA
1 -ATAAATAATAAAAATATTAATAAATAAA
*
9056242 ATAAA-AATAAATATATATTAATAAAT-AG
1 ATAAATAATAAA-A-ATATTAATAAATAAA
* *
9056270 ACAAATAATAAAAA-AATAA-AAATAAA
1 ATAAATAATAAAAATATTAATAAATAAA
9056296 A
1 A
9056297 GTCAATTGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
25 4 0.06
26 6 0.08
27 7 0.10
28 12 0.17
29 27 0.38
30 16 0.22
ACGTcount: A:0.72, C:0.02, G:0.02, T:0.25
Consensus pattern (28 bp):
ATAAATAATAAAAATATTAATAAATAAA
Found at i:9068739 original size:22 final size:23
Alignment explanation
Indices: 9068697--9068744 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
9068687 TTTGATTTAA
9068697 TTATTATCGAGTTAAATTTAAAT
1 TTATTATCGAGTTAAATTTAAAT
9068720 TTATTCATCGA-TTAAA-TTAAAT
1 TTATT-ATCGAGTTAAATTTAAAT
9068742 TTA
1 TTA
9068745 AATATTTTTA
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
22 9 0.38
23 10 0.42
24 5 0.21
ACGTcount: A:0.40, C:0.06, G:0.06, T:0.48
Consensus pattern (23 bp):
TTATTATCGAGTTAAATTTAAAT
Found at i:9068908 original size:23 final size:22
Alignment explanation
Indices: 9068857--9068908 Score: 52
Period size: 24 Copynumber: 2.3 Consensus size: 22
9068847 TTGAATTCGA
*
9068857 TTATAAATAATTAAATTTTTAT
1 TTATATATAATTAAATTTTTAT
*
9068879 TAAATATATAAATTAAATTTATT-T
1 T-TATATAT-AATTAAATTT-TTAT
9068903 TTATAT
1 TTATAT
9068909 GTTAATCGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 5
0.75 0.09 0.16
Matches are distributed among these distances:
22 1 0.04
23 9 0.38
24 12 0.50
25 2 0.08
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (22 bp):
TTATATATAATTAAATTTTTAT
Found at i:9069023 original size:31 final size:27
Alignment explanation
Indices: 9068959--9069024 Score: 71
Period size: 31 Copynumber: 2.3 Consensus size: 27
9068949 AATTAAATTT
9068959 AAATTAAA-AAAATAAAATTTGATCAA
1 AAATTAAATAAAATAAAATTTGATCAA
* *
9068985 AATTTAAATAAAATATTAAATTATGAGTTAA
1 AAATTAAATAAAATA--AAATT-TGA-TCAA
9069016 AAATTAAAT
1 AAATTAAAT
9069025 TTAAATTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
26 7 0.22
27 6 0.19
29 5 0.16
30 3 0.09
31 11 0.34
ACGTcount: A:0.61, C:0.02, G:0.05, T:0.33
Consensus pattern (27 bp):
AAATTAAATAAAATAAAATTTGATCAA
Found at i:9070078 original size:5 final size:5
Alignment explanation
Indices: 9070068--9070103 Score: 72
Period size: 5 Copynumber: 7.2 Consensus size: 5
9070058 TGTTTACAAC
9070068 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
9070104 ACTAGGATTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 31 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (5 bp):
ATAAA
Found at i:9079517 original size:36 final size:33
Alignment explanation
Indices: 9079432--9079533 Score: 132
Period size: 36 Copynumber: 3.0 Consensus size: 33
9079422 CCTTTGTTCT
*
9079432 TGATACATTTAAGGTGGAGGATATATTTGAGGA
1 TGATACATTTGAGGTGGAGGATATATTTGAGGA
* * * *
9079465 TGATACATTTGTGGTGGAGGGTACATTTGTGGTAA
1 TGATACATTTGAGGTGGAGGATATATTTGAGG--A
9079500 CTGATACATTTGAGGTGGAGGATATATTTGAGGA
1 -TGATACATTTGAGGTGGAGGATATATTTGAGGA
9079534 GGTGGAGGAT
Statistics
Matches: 57, Mismatches: 9, Indels: 5
0.80 0.13 0.07
Matches are distributed among these distances:
33 27 0.47
34 1 0.02
35 1 0.02
36 28 0.49
ACGTcount: A:0.28, C:0.05, G:0.32, T:0.34
Consensus pattern (33 bp):
TGATACATTTGAGGTGGAGGATATATTTGAGGA
Found at i:9079523 original size:18 final size:18
Alignment explanation
Indices: 9079433--9079557 Score: 105
Period size: 18 Copynumber: 6.9 Consensus size: 18
9079423 CTTTGTTCTT
*
9079433 GATACATTTAAGGTGGAG
1 GATACATTTGAGGTGGAG
* *
9079451 GATATATTTGA---GGAT
1 GATACATTTGAGGTGGAG
*
9079466 GATACATTTGTGGTGGAG
1 GATACATTTGAGGTGGAG
* * * *
9079484 GGTACATTTGTGGT-AACT
1 GATACATTTGAGGTGGA-G
9079502 GATACATTTGAGGTGGAG
1 GATACATTTGAGGTGGAG
*
9079520 GATATATTTGAGGAGGTGGAG
1 GATACATTT---GAGGTGGAG
9079541 GATACATTTGAGGTGGA
1 GATACATTTGAGGTGGA
9079558 TAATAACCAT
Statistics
Matches: 84, Mismatches: 15, Indels: 16
0.73 0.13 0.14
Matches are distributed among these distances:
15 12 0.14
17 1 0.01
18 53 0.63
19 1 0.01
21 17 0.20
ACGTcount: A:0.28, C:0.05, G:0.35, T:0.32
Consensus pattern (18 bp):
GATACATTTGAGGTGGAG
Found at i:9079535 original size:21 final size:21
Alignment explanation
Indices: 9079511--9079553 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
9079501 TGATACATTT
*
9079511 GAGGTGGAGGATATATTTGAG
1 GAGGTGGAGGATACATTTGAG
9079532 GAGGTGGAGGATACATTTGAG
1 GAGGTGGAGGATACATTTGAG
9079553 G
1 G
9079554 TGGATAATAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.28, C:0.02, G:0.44, T:0.26
Consensus pattern (21 bp):
GAGGTGGAGGATACATTTGAG
Found at i:9083388 original size:26 final size:26
Alignment explanation
Indices: 9083339--9083387 Score: 82
Period size: 25 Copynumber: 1.9 Consensus size: 26
9083329 TTTTAAAAAT
*
9083339 TAAAAGTTTTCAAACTTATATTTTAA
1 TAAAAGTTTTCAAACCTATATTTTAA
9083365 TAAAA-TTTTCAAACCTATATTTT
1 TAAAAGTTTTCAAACCTATATTTT
9083388 TTATTTTTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.41, C:0.10, G:0.02, T:0.47
Consensus pattern (26 bp):
TAAAAGTTTTCAAACCTATATTTTAA
Found at i:9083816 original size:12 final size:13
Alignment explanation
Indices: 9083801--9083831 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
9083791 AAATTTTTTT
9083801 AAAATT-AATAAA
1 AAAATTAAATAAA
9083813 AAAATTAAATAAA
1 AAAATTAAATAAA
9083826 AAAATT
1 AAAATT
9083832 CAATCCCACC
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
12 6 0.33
13 12 0.67
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (13 bp):
AAAATTAAATAAA
Found at i:9083935 original size:20 final size:20
Alignment explanation
Indices: 9083912--9083976 Score: 57
Period size: 20 Copynumber: 3.3 Consensus size: 20
9083902 CCCCCAACAT
9083912 CCCACCACACCCAATCCTGC
1 CCCACCACACCCAATCCTGC
* *
9083932 CCCACCTTCTTCCCAA--C-GC
1 CCCACC-AC-ACCCAATCCTGC
9083951 CCCACCACACCCAATCCCT-C
1 CCCACCACACCCAAT-CCTGC
9083971 CCCACC
1 CCCACC
9083977 TTCCCCCCAA
Statistics
Matches: 35, Mismatches: 4, Indels: 12
0.69 0.08 0.24
Matches are distributed among these distances:
17 5 0.14
18 1 0.03
19 8 0.23
20 15 0.43
21 1 0.03
22 5 0.14
ACGTcount: A:0.22, C:0.63, G:0.03, T:0.12
Consensus pattern (20 bp):
CCCACCACACCCAATCCTGC
Found at i:9083958 original size:39 final size:38
Alignment explanation
Indices: 9083883--9084059 Score: 187
Period size: 39 Copynumber: 4.4 Consensus size: 38
9083873 CCACCCCCAT
* **
9083883 CAATCCCTCTCCACCTTCCCCCCCAACATCCCACCACACC
1 CAATCCCTCCCCACCTT--CCCCCAACGCCCCACCACACC
*
9083923 CAAT-CCTGCCCCACCTTCTTCCCAACGCCCCACCACACC
1 CAATCCCT-CCCCACCTTC-CCCCAACGCCCCACCACACC
9083962 CAATCCCTCCCCACCTTCCCCCCAACGCCCCACCACAACTAAACC
1 CAATCCCTCCCCACCTT-CCCCCAACGCCCCA-C-C-AC---ACC
9084007 CAATCCCTCCCCACCTTCCCCTCAACGCCCCACCACACC
1 CAATCCCTCCCCACCTTCCCC-CAACGCCCCACCACACC
*
9084046 TAAT-CCTCCCCACC
1 CAATCCCTCCCCACC
9084060 CCATCCAATC
Statistics
Matches: 120, Mismatches: 6, Indels: 24
0.80 0.04 0.16
Matches are distributed among these distances:
38 11 0.09
39 51 0.43
40 17 0.14
41 1 0.01
42 4 0.03
43 1 0.01
44 5 0.04
45 30 0.25
ACGTcount: A:0.23, C:0.61, G:0.02, T:0.14
Consensus pattern (38 bp):
CAATCCCTCCCCACCTTCCCCCAACGCCCCACCACACC
Found at i:9084023 original size:45 final size:45
Alignment explanation
Indices: 9083920--9084048 Score: 164
Period size: 45 Copynumber: 3.0 Consensus size: 45
9083910 ATCCCACCAC
**
9083920 ACCCAAT-CCTGCCCCACCTTCTTCCCAACGCCCCA-C-C-AC---
1 ACCCAATCCCT-CCCCACCTTCCCCCCAACGCCCCACCACAACTAA
9083959 ACCCAATCCCTCCCCACCTTCCCCCCAACGCCCCACCACAACTAA
1 ACCCAATCCCTCCCCACCTTCCCCCCAACGCCCCACCACAACTAA
* *
9084004 ACCCAATCCCTCCCCACCTTCCCCTCAACGCCCCACCACACCTAA
1 ACCCAATCCCTCCCCACCTTCCCCCCAACGCCCCACCACAACTAA
9084049 TCCTCCCCAC
Statistics
Matches: 79, Mismatches: 4, Indels: 8
0.87 0.04 0.09
Matches are distributed among these distances:
39 29 0.37
40 4 0.05
41 1 0.01
42 2 0.03
45 43 0.54
ACGTcount: A:0.24, C:0.60, G:0.03, T:0.13
Consensus pattern (45 bp):
ACCCAATCCCTCCCCACCTTCCCCCCAACGCCCCACCACAACTAA
Found at i:9084069 original size:19 final size:20
Alignment explanation
Indices: 9084034--9084074 Score: 50
Period size: 19 Copynumber: 2.1 Consensus size: 20
9084024 CCCCTCAACG
9084034 CCCCACCACACCTAATC-CT
1 CCCCACCACACCTAATCTCT
*
9084053 CCCCACCCCATCC-AATCTCT
1 CCCCACCACA-CCTAATCTCT
9084073 CC
1 CC
9084075 ACGTGCCTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
19 13 0.68
20 6 0.32
ACGTcount: A:0.22, C:0.61, G:0.00, T:0.17
Consensus pattern (20 bp):
CCCCACCACACCTAATCTCT
Found at i:9089012 original size:21 final size:21
Alignment explanation
Indices: 9088986--9089028 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
9088976 TGGACATCAC
9088986 ATAGAAAAAGTATGTGGTGAT
1 ATAGAAAAAGTATGTGGTGAT
9089007 ATAGAAAAAGTATGTGGTGAT
1 ATAGAAAAAGTATGTGGTGAT
9089028 A
1 A
9089029 CCATAGCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.00, G:0.28, T:0.28
Consensus pattern (21 bp):
ATAGAAAAAGTATGTGGTGAT
Found at i:9090983 original size:16 final size:16
Alignment explanation
Indices: 9090962--9090993 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
9090952 TATAACACTA
9090962 AATTATAATATCATGG
1 AATTATAATATCATGG
*
9090978 AATTATAATATTATGG
1 AATTATAATATCATGG
9090994 TCTATTGATA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.12, T:0.41
Consensus pattern (16 bp):
AATTATAATATCATGG
Found at i:9093125 original size:11 final size:11
Alignment explanation
Indices: 9093109--9093133 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9093099 AATGCTAATA
9093109 AAAAAATAAAG
1 AAAAAATAAAG
9093120 AAAAAATAAAG
1 AAAAAATAAAG
9093131 AAA
1 AAA
9093134 GAAACAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.84, C:0.00, G:0.08, T:0.08
Consensus pattern (11 bp):
AAAAAATAAAG
Found at i:9111197 original size:21 final size:20
Alignment explanation
Indices: 9111160--9111198 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
9111150 AATTATTCAA
*
9111160 TAAATTAAAATATAATTATT
1 TAAATTAAAATAAAATTATT
*
9111180 TAAATTTAAGATAAAATTA
1 TAAA-TTAAAATAAAATTA
9111199 AATTAAAATC
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (20 bp):
TAAATTAAAATAAAATTATT
Found at i:9115207 original size:29 final size:28
Alignment explanation
Indices: 9115147--9115224 Score: 86
Period size: 29 Copynumber: 2.7 Consensus size: 28
9115137 TATACTATAA
*
9115147 TAAAATATTTAATATAATATCTTAATTC
1 TAAAATATTTAATATAATATCTTAACTC
*
9115175 TAAAATATTTTAATATAATAT-TTAAACTG
1 TAAAATA-TTTAATATAATATCTT-AACTC
* *
9115204 TAAATTAATTAATATATATAT
1 TAAAATATTTAATATA-ATAT
9115225 AATTATTTAT
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
28 17 0.40
29 26 0.60
ACGTcount: A:0.49, C:0.04, G:0.01, T:0.46
Consensus pattern (28 bp):
TAAAATATTTAATATAATATCTTAACTC
Found at i:9115290 original size:30 final size:32
Alignment explanation
Indices: 9115256--9115319 Score: 80
Period size: 32 Copynumber: 2.1 Consensus size: 32
9115246 CATAATTTTA
9115256 AATTAATTACA-TCA-AAAATAT-TATTATATT
1 AATTAA-TACATTCATAAAATATATATTATATT
* *
9115286 AATTAATAGATTCATAAATTATATATTATATT
1 AATTAATACATTCATAAAATATATATTATATT
9115318 AA
1 AA
9115320 AAATTTTTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
29 3 0.10
30 9 0.31
31 6 0.21
32 11 0.38
ACGTcount: A:0.50, C:0.05, G:0.02, T:0.44
Consensus pattern (32 bp):
AATTAATACATTCATAAAATATATATTATATT
Found at i:9122026 original size:24 final size:24
Alignment explanation
Indices: 9121994--9122039 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
9121984 AAATATAGTC
9121994 TATAGGTTTGGCTTACTTCAGTTT
1 TATAGGTTTGGCTTACTTCAGTTT
9122018 TATAGGTTTGGCTTACTTCAGT
1 TATAGGTTTGGCTTACTTCAGT
9122040 CTATAGTAAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.17, C:0.13, G:0.22, T:0.48
Consensus pattern (24 bp):
TATAGGTTTGGCTTACTTCAGTTT
Found at i:9133973 original size:69 final size:68
Alignment explanation
Indices: 9133799--9134003 Score: 204
Period size: 69 Copynumber: 3.0 Consensus size: 68
9133789 CTTATTTGCT
* * ** ** * *
9133799 TTTGTAAATATGATGGAAAAAGCATCAAATAAGGTGTTTGTTTAAAGGAAACGCCTTAGTTGAA-
1 TTTGTAAATATGTTGGAAAAATCATCAAATAAGGCATTTGTAAAAAGGAAACACCTTATTTGAAT
9133863 ---
66 GGG
* * *
9133863 TTTGTAAAGAT-TCTAGAAAATCATCTATCAAATAAGGCATTTGTAAAAAGGAAACATCTTATTT
1 TTTGTAAATATGT-TGGAAAA--ATC-ATCAAATAAGGCATTTGTAAAAAGGAAACACCTTATTT
9133927 GAATGGG
62 GAATGGG
** *
9133934 CTTTGTAAATATGTTGGAAAAATCATCAAATAAGGCATTTGTAAAAATAAAATACCTTATTTGAA
1 -TTTGTAAATATGTTGGAAAAATCATCAAATAAGGCATTTGTAAAAAGGAAACACCTTATTTGAA
9133999 TGGG
65 TGGG
9134003 T
1 T
9134004 CAAATAAGGC
Statistics
Matches: 114, Mismatches: 17, Indels: 16
0.78 0.12 0.11
Matches are distributed among these distances:
64 16 0.14
66 2 0.02
67 34 0.30
68 1 0.01
69 41 0.36
70 3 0.03
72 16 0.14
73 1 0.01
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (68 bp):
TTTGTAAATATGTTGGAAAAATCATCAAATAAGGCATTTGTAAAAAGGAAACACCTTATTTGAAT
GGG
Found at i:9134185 original size:21 final size:21
Alignment explanation
Indices: 9134159--9134201 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
9134149 CTTACCTTAA
9134159 TTGATTATCAATTAAGGCGTT
1 TTGATTATCAATTAAGGCGTT
9134180 TTGATTATCAATTAAGGCGTT
1 TTGATTATCAATTAAGGCGTT
9134201 T
1 T
9134202 CTTCCCTGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.09, G:0.19, T:0.44
Consensus pattern (21 bp):
TTGATTATCAATTAAGGCGTT
Found at i:9139766 original size:16 final size:17
Alignment explanation
Indices: 9139745--9139786 Score: 77
Period size: 17 Copynumber: 2.5 Consensus size: 17
9139735 TAAATTTCAT
9139745 ATTTTTAAAT-ATTTTA
1 ATTTTTAAATCATTTTA
9139761 ATTTTTAAATCATTTTA
1 ATTTTTAAATCATTTTA
9139778 ATTTTTAAA
1 ATTTTTAAA
9139787 AATATTTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
16 10 0.40
17 15 0.60
ACGTcount: A:0.38, C:0.02, G:0.00, T:0.60
Consensus pattern (17 bp):
ATTTTTAAATCATTTTA
Found at i:9139865 original size:22 final size:20
Alignment explanation
Indices: 9139827--9139873 Score: 51
Period size: 22 Copynumber: 2.2 Consensus size: 20
9139817 AATTTTCTAA
9139827 TTTTTTAAAATTATTAAATTT
1 TTTTTTAAAATTATT-AATTT
*
9139848 GTTTTTTCAATATT-TTAATTT
1 -TTTTTT-AAAATTATTAATTT
9139869 TTTTT
1 TTTTT
9139874 AAATAAAATT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
20 5 0.22
21 5 0.22
22 8 0.35
23 5 0.22
ACGTcount: A:0.28, C:0.02, G:0.02, T:0.68
Consensus pattern (20 bp):
TTTTTTAAAATTATTAATTT
Found at i:9140447 original size:19 final size:20
Alignment explanation
Indices: 9140417--9140454 Score: 69
Period size: 19 Copynumber: 1.9 Consensus size: 20
9140407 TCTAACTTAT
9140417 TACGTCAATAAAATTAATAC
1 TACGTCAATAAAATTAATAC
9140437 TACGT-AATAAAATTAATA
1 TACGTCAATAAAATTAATA
9140455 TACAAATCAT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.32
Consensus pattern (20 bp):
TACGTCAATAAAATTAATAC
Found at i:9142577 original size:2 final size:2
Alignment explanation
Indices: 9142572--9142602 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
9142562 TTGCACACAC
9142572 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
9142603 TTACAGAAGC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.00, G:0.48, T:0.00
Consensus pattern (2 bp):
AG
Found at i:9148572 original size:14 final size:14
Alignment explanation
Indices: 9148555--9148589 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
9148545 TCCTCTTCTT
*
9148555 TTTTTTTTTTTTAA
1 TTTTTTTTTTATAA
*
9148569 TTTTTTTTTTATAC
1 TTTTTTTTTTATAA
9148583 TTTTTTT
1 TTTTTTT
9148590 CCGAGCCCAC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.11, C:0.03, G:0.00, T:0.86
Consensus pattern (14 bp):
TTTTTTTTTTATAA
Found at i:9151520 original size:19 final size:19
Alignment explanation
Indices: 9151495--9151541 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
9151485 TTTATCATAA
* *
9151495 AAATAATTTTTTAATTATT
1 AAATAATTTTATAAATATT
*
9151514 AATTAATTTTATAAATATT
1 AAATAATTTTATAAATATT
9151533 AAATAATTT
1 AAATAATTT
9151542 AAAATTTTTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
AAATAATTTTATAAATATT
Found at i:9151884 original size:8 final size:8
Alignment explanation
Indices: 9151867--9151923 Score: 57
Period size: 8 Copynumber: 7.2 Consensus size: 8
9151857 TTGTTTTATT
9151867 AAAT-TAA
1 AAATATAA
9151874 AAATATAA
1 AAATATAA
*
9151882 AAATA-CA
1 AAATATAA
9151889 AAATAT-A
1 AAATATAA
9151896 AAATATAA
1 AAATATAA
*
9151904 AAAAATACCA
1 AAATATA--A
9151914 AAATATAA
1 AAATATAA
9151922 AA
1 AA
9151924 TACCAAACAA
Statistics
Matches: 42, Mismatches: 3, Indels: 9
0.78 0.06 0.17
Matches are distributed among these distances:
7 17 0.40
8 18 0.43
10 7 0.17
ACGTcount: A:0.74, C:0.05, G:0.00, T:0.21
Consensus pattern (8 bp):
AAATATAA
Found at i:9151891 original size:15 final size:14
Alignment explanation
Indices: 9151871--9151925 Score: 56
Period size: 15 Copynumber: 3.6 Consensus size: 14
9151861 TTTATTAAAT
9151871 TAAAAATATAAAAA
1 TAAAAATATAAAAA
9151885 TACAAAATATAAAATA
1 TA-AAAATATAAAA-A
*
9151901 TAAAAAAATACCAAAA
1 TAAAAATATA--AAAA
9151917 TATAAAATA
1 TA-AAAATA
9151926 CCAAACAAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 7
0.79 0.05 0.16
Matches are distributed among these distances:
14 2 0.06
15 18 0.53
16 6 0.18
17 8 0.24
ACGTcount: A:0.73, C:0.05, G:0.00, T:0.22
Consensus pattern (14 bp):
TAAAAATATAAAAA
Found at i:9151940 original size:25 final size:24
Alignment explanation
Indices: 9151880--9151941 Score: 88
Period size: 25 Copynumber: 2.5 Consensus size: 24
9151870 TTAAAAATAT
*
9151880 AAAAATACAAAATATAAAATATAA
1 AAAAATACAAAATATAAAATACAA
9151904 AAAAATACCAAAATATAAAATACCAA
1 AAAAATA-CAAAATATAAAATA-CAA
*
9151930 ACAAATACAAAA
1 AAAAATACAAAA
9151942 AAAACAAAAG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
24 7 0.21
25 19 0.56
26 8 0.24
ACGTcount: A:0.73, C:0.11, G:0.00, T:0.16
Consensus pattern (24 bp):
AAAAATACAAAATATAAAATACAA
Found at i:9161063 original size:28 final size:28
Alignment explanation
Indices: 9161026--9161080 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
9161016 TGAGTCTAAG
9161026 TATTCACCATTAGAGAAGATGTGTTGTA
1 TATTCACCATTAGAGAAGATGTGTTGTA
9161054 TATTCACCATTAGAGAAGATGTGTTGT
1 TATTCACCATTAGAGAAGATGTGTTGT
9161081 GCATTGACCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.31, C:0.11, G:0.22, T:0.36
Consensus pattern (28 bp):
TATTCACCATTAGAGAAGATGTGTTGTA
Found at i:9164102 original size:49 final size:49
Alignment explanation
Indices: 9163944--9164798 Score: 648
Period size: 48 Copynumber: 17.7 Consensus size: 49
9163934 AAAACATATC
* * * * * * *
9163944 AAATTTTTAAAGTTATTGAGCCTTTACTTAGAAGAGCTTTTT-TAGATG
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATA
* * * * * *
9163992 AATTTTTTAAAGTTGTTGAGCTTCTGCTAAGAGAAGTTTTTTTAAGATGA
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT-A
* * *
9164042 GAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCGAGACA
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATA
* * * * * *
9164091 AAATTTTTAAAGTTGTTGAACATCTGCTTAAAGGAGCTTTTTC-GGATG
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATA
* * * *
9164139 AAA-TTTTAAAGTTGTTAAGCCTTTACTGAGATGAGCTTTTTCAAGATGA
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT-A
* * * * *
9164188 GAATTGTTAAAGTTGTTAAGCCTATGCTGAGATGAGC-TTTTCAAGAT-
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATA
* * * * *
9164235 AAA-TTTTAAAGTTGTTGAGTCTCTGGTAAGAGAAGCCTTTTT-GAGATA
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAG-CTTTTTCAAGATA
* * * * * *
9164283 AAATTTTTAAAGTTGTTGAGCCTCTGTTTAGATGAGC-TTTTCCATATG
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATA
*
9164331 AAATTTTTAAAGTTGTTGAGCCTCTACTGAGAGGAGC-TTTTCAAGAT-
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATA
** * * * * *
9164378 GGATTTTTAAAGTTGTTGAGCCTCTACTAAGAGGAACCTTTTCGAGATA
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATA
* * * *
9164427 AAA-TTTTAAAGTTATTGAGCCTTTACTGAGAGGAGCTTTTTCAAGATGT
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT-A
* * * *
9164476 GAATTTTTAAAGTTGTTAAGCCTCTGTTGAGAAGAGCTTTTT-AAGAT-
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATA
* * * * * ** * *
9164523 AGATTTTTAAAGTTGTTAAGTCTCTGTTAAGAAAAG-TCTTTTCGAGACA
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCT-TTTTCAAGATA
* * * *
9164572 GAA-TTTTAAAGTTGTCGAGCCTCTGCTGAGAAGAGC-TTTTCAAAATA
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATA
* * * * *
9164619 AGGATTTTTAAAGTTGTTGAGCCTCTACTAAGAGAAGCTTTTTCAAAATGA
1 A-AATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGAT-A
* * * * * * ** *
9164670 GAATTTTTAAAGTTGTTGAGCTTTTGTTGAGAAGTA-TTTTTTTTAGATG
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAG-AGGAGCTTTTTCAAGATA
* * * * * * * *
9164719 AGATTTTTAATGTTATTGAGCCTCTGCTTAAAGCAACTTTTTCAAAATA
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATA
* **
9164768 AAA-TTTTAAAATTAATGAGCCTCTGCTGAGA
1 AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGA
9164799 AAAGTCTCTT
Statistics
Matches: 637, Mismatches: 146, Indels: 48
0.77 0.18 0.06
Matches are distributed among these distances:
46 25 0.04
47 118 0.19
48 196 0.31
49 151 0.24
50 143 0.22
51 4 0.01
ACGTcount: A:0.30, C:0.11, G:0.20, T:0.39
Consensus pattern (49 bp):
AAATTTTTAAAGTTGTTGAGCCTCTGCTGAGAGGAGCTTTTTCAAGATA
Found at i:9164528 original size:145 final size:144
Alignment explanation
Indices: 9163996--9164690 Score: 704
Period size: 145 Copynumber: 4.8 Consensus size: 144
9163986 TAGATGAATT
* * * *
9163996 TTTTAAAGTTGTTGAG-CTTCTGCTAAGAGAAGTTTTTTTAAGATGAGAATTTTTAAAGTTGTTG
1 TTTTAAAGTTGTTGAGCCTT-TGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTG
* * * * * *
9164060 AGCCTCTGCTGAGAGGAGCTTTTTCGAGACAAAATTTTTAAAGTTGTTGAACATCTGCTTAA-AG
65 AGCCTCTGCTGAGAAGAGCTTTTT-AAGA-TAGATTTTTAAAGTTGTTGAGCCTCTGC-TAAGA-
* * *
9164124 GAGCTTTTTCG-GATGAAA
126 GAACCTTTTCGAGATAAAA
* * * * *
9164142 TTTTAAAGTTGTTAAGCCTTTACTGAGATGAGCTTTTTCAAGATGAGAATTGTTAAAGTTGTTAA
1 TTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGA
* * * * * *
9164207 GCCTATGCTGAGATGAGCTTTTCAAGATA-AATTTTAAAGTTGTTGAGTCTCTGGTAAGAGAAGC
66 GCCTCTGCTGAGAAGAGCTTTTTAAGATAGATTTTTAAAGTTGTTGAGCCTCTGCTAAGAGAA-C
*
9164271 CTTTTTGAGATAAAA
130 CTTTTCGAGATAAAA
* * * * * *
9164286 TTTTTAAAGTTGTTGAGCCTCTGTTTAGATGAGC-TTTTCCATATGA-AATTTTTAAAGTTGTTG
1 -TTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTG
* * * * *
9164349 AGCCTCTACTGAGAGGAGCTTTTCAAGATGGATTTTTAAAGTTGTTGAGCCTCTACTAAGAGGAA
65 AGCCTCTGCTGAGAAGAGCTTTTTAAGATAGATTTTTAAAGTTGTTGAGCCTCTGCTAAGA-GAA
9164414 CCTTTTCGAGATAAAA
129 CCTTTTCGAGATAAAA
* * * *
9164430 TTTTAAAGTTATTGAGCCTTTACTGAGAGGAGCTTTTTCAAGATGTGAATTTTTAAAGTTGTTAA
1 TTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGA
* * * * * *
9164495 GCCTCTGTTGAGAAGAGCTTTTTAAGATAGATTTTTAAAGTTGTTAAGTCTCTGTTAAGAAAAGT
66 GCCTCTGCTGAGAAGAGCTTTTTAAGATAGATTTTTAAAGTTGTTGAGCCTCTGCTAAGAGAA-C
* *
9164560 CTTTTCGAGACAGAA
130 CTTTTCGAGATAAAA
* * * * * *
9164575 TTTTAAAGTTGTCGAGCCTCTGCTGAGAAGAGC-TTTTCAAAATAAGGATTTTTAAAGTTGTTGA
1 TTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGA
* * *
9164639 GCCTCTACTAAG-AGAAGCTTTTTCAAAATGAGAATTTTTAAAGTTGTTGAGC
66 GCCTCTGCTGAGAAG-AGCTTTTT-AAGAT-AG-ATTTTTAAAGTTGTTGAGC
9164691 TTTTGTTGAG
Statistics
Matches: 455, Mismatches: 80, Indels: 27
0.81 0.14 0.05
Matches are distributed among these distances:
142 5 0.01
143 97 0.21
144 112 0.25
145 147 0.32
146 74 0.16
147 20 0.04
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.38
Consensus pattern (144 bp):
TTTTAAAGTTGTTGAGCCTTTGCTGAGAGGAGCTTTTTCAAGATGAGAATTTTTAAAGTTGTTGA
GCCTCTGCTGAGAAGAGCTTTTTAAGATAGATTTTTAAAGTTGTTGAGCCTCTGCTAAGAGAACC
TTTTCGAGATAAAA
Found at i:9164915 original size:10 final size:10
Alignment explanation
Indices: 9164900--9164924 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
9164890 TTTATGTTAA
9164900 AAAAAAAAAG
1 AAAAAAAAAG
9164910 AAAAAAAAAG
1 AAAAAAAAAG
9164920 AAAAA
1 AAAAA
9164925 TCCTTTTGGA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.92, C:0.00, G:0.08, T:0.00
Consensus pattern (10 bp):
AAAAAAAAAG
Found at i:9165136 original size:27 final size:27
Alignment explanation
Indices: 9165064--9165137 Score: 85
Period size: 28 Copynumber: 2.7 Consensus size: 27
9165054 GGGTTGATAC
* *
9165064 CCGATTTTAATTCAACTGGGCTTCAAG
1 CCGATTTCAATTCAATTGGGCTTCAAG
* *
9165091 CCTGATTTCAATTTAATTGGGCTTCAGG
1 CC-GATTTCAATTCAATTGGGCTTCAAG
* *
9165119 TCGATTTCAATTCGATTGG
1 CCGATTTCAATTCAATTGG
9165138 ACCTAAAGTC
Statistics
Matches: 39, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
27 17 0.44
28 22 0.56
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (27 bp):
CCGATTTCAATTCAATTGGGCTTCAAG
Found at i:9165241 original size:10 final size:10
Alignment explanation
Indices: 9165226--9165306 Score: 84
Period size: 10 Copynumber: 8.4 Consensus size: 10
9165216 TTATTAAATT
9165226 AAAAATACAA
1 AAAAATACAA
9165236 AAAAATAC--
1 AAAAATACAA
*
9165244 AAAAATACCA
1 AAAAATACAA
9165254 AAAAATACCAA
1 AAAAATA-CAA
9165265 AAAAATAC-A
1 AAAAATACAA
9165274 AAAAATACAA
1 AAAAATACAA
9165284 AATACAA-A-AA
1 AA-A-AATACAA
9165294 AAAAATA-AA
1 AAAAATACAA
9165303 AAAA
1 AAAA
9165307 TAAAAAGGGG
Statistics
Matches: 63, Mismatches: 1, Indels: 15
0.80 0.01 0.19
Matches are distributed among these distances:
8 10 0.16
9 17 0.27
10 23 0.37
11 11 0.17
12 2 0.03
ACGTcount: A:0.79, C:0.11, G:0.00, T:0.10
Consensus pattern (10 bp):
AAAAATACAA
Found at i:9165268 original size:29 final size:27
Alignment explanation
Indices: 9165226--9165295 Score: 99
Period size: 29 Copynumber: 2.6 Consensus size: 27
9165216 TTATTAAATT
9165226 AAAAATACAAAAAAATACAAAAATACCA
1 AAAAATACAAAAAAATACAAAAATA-CA
9165254 AAAAATACCAAAAAAATACAAAAAATAC-
1 AAAAATA-CAAAAAAATAC-AAAAATACA
9165282 -AAAATACAAAAAAA
1 AAAAATACAAAAAAA
9165296 AAATAAAAAA
Statistics
Matches: 40, Mismatches: 0, Indels: 6
0.87 0.00 0.13
Matches are distributed among these distances:
26 8 0.20
27 6 0.15
28 7 0.17
29 12 0.30
30 7 0.17
ACGTcount: A:0.77, C:0.13, G:0.00, T:0.10
Consensus pattern (27 bp):
AAAAATACAAAAAAATACAAAAATACA
Found at i:9165296 original size:29 final size:29
Alignment explanation
Indices: 9165234--9165312 Score: 92
Period size: 29 Copynumber: 2.8 Consensus size: 29
9165224 TTAAAAATAC
* **
9165234 AAAAAAATAC-AAAAATACCAAAAAATACC
1 AAAAAAATACAAAAAATA-CAAAAAACAAA
*
9165263 AAAAAAATACAAAAAATACAAAATACAAA
1 AAAAAAATACAAAAAATACAAAAAACAAA
9165292 AAAAAAATA-AAAAAATA-AAAA
1 AAAAAAATACAAAAAATACAAAA
9165313 GGGGAGATAA
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
27 4 0.09
28 8 0.18
29 26 0.58
30 7 0.16
ACGTcount: A:0.80, C:0.10, G:0.00, T:0.10
Consensus pattern (29 bp):
AAAAAAATACAAAAAATACAAAAAACAAA
Found at i:9166208 original size:37 final size:37
Alignment explanation
Indices: 9166158--9166242 Score: 98
Period size: 37 Copynumber: 2.3 Consensus size: 37
9166148 ATAAATCGAA
* * * *
9166158 CCAGATTGAACTAGACCGTGCTGAACCTTTGAATCAC
1 CCAGATCGAACTAGACCGCGCTGAACCGTCGAATCAC
* * *
9166195 CCAGATCGAACTAGATCGCGTTGAATCGTCGAATCAC
1 CCAGATCGAACTAGACCGCGCTGAACCGTCGAATCAC
*
9166232 CCAAATCGAAC
1 CCAGATCGAAC
9166243 CAGATCGGTT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.32, C:0.28, G:0.19, T:0.21
Consensus pattern (37 bp):
CCAGATCGAACTAGACCGCGCTGAACCGTCGAATCAC
Found at i:9169228 original size:22 final size:22
Alignment explanation
Indices: 9169150--9169379 Score: 150
Period size: 22 Copynumber: 10.5 Consensus size: 22
9169140 AGTATAAAAT
* *
9169150 AATTATCAATAATTAACAATTA
1 AATTATCAATAATTTACTATTA
* **
9169172 AATTATTAATAATTTACTACCA
1 AATTATCAATAATTTACTATTA
* *
9169194 TATT-TCCAGTAATTTA-TCATTA
1 AATTAT-CAATAATTTACT-ATTA
*
9169216 AATTATCAATAATTTAGTATTA
1 AATTATCAATAATTTACTATTA
* * *
9169238 AATAATCAATTATTTACTACTA
1 AATTATCAATAATTTACTATTA
* *
9169260 AATTATTATTAATTTACTATTA
1 AATTATCAATAATTTACTATTA
* * *
9169282 AATTAAT-GATAACTTACTACTA
1 AATT-ATCAATAATTTACTATTA
* * *
9169304 ACTTA-CTAATGATTTATTA-TA
1 AATTATC-AATAATTTACTATTA
*
9169325 AAGTTAT-AACTGATTTACTATTA
1 AA-TTATCAA-TAATTTACTATTA
* *
9169348 ATTTATCAATAATTTATTA-TA
1 AATTATCAATAATTTACTATTA
9169369 AAGTTATCAAT
1 AA-TTATCAAT
9169380 TTTTAATCAA
Statistics
Matches: 159, Mismatches: 36, Indels: 26
0.72 0.16 0.12
Matches are distributed among these distances:
21 11 0.07
22 139 0.87
23 9 0.06
ACGTcount: A:0.43, C:0.10, G:0.03, T:0.44
Consensus pattern (22 bp):
AATTATCAATAATTTACTATTA
Found at i:9169413 original size:22 final size:22
Alignment explanation
Indices: 9169388--9169449 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
9169378 ATTTTTAATC
* *
9169388 AATTTACTACTGAATTATCACT
1 AATTTACAACTAAATTATCACT
*
9169410 AATTTACAACTAAATTATTACT
1 AATTTACAACTAAATTATCACT
*
9169432 AATTTACAACTAAGTTAT
1 AATTTACAACTAAATTAT
9169450 TAGTGTTTAC
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (22 bp):
AATTTACAACTAAATTATCACT
Found at i:9169535 original size:22 final size:22
Alignment explanation
Indices: 9169446--9169625 Score: 89
Period size: 22 Copynumber: 8.2 Consensus size: 22
9169436 TACAACTAAG
* * *
9169446 TTATTAGTG-TTTACTACTGTA
1 TTATTAATGATTTATTACTATA
*
9169467 TTATTAATGATTGATTACTA-A
1 TTATTAATGATTTATTACTATA
* * * *
9169488 GTTATTAATAACTTACTACTACA
1 -TTATTAATGATTTATTACTATA
*
9169511 TTATTAATGATTTATTATTATA
1 TTATTAATGATTTATTACTATA
** * * *
9169533 TTACGAATGCAGTTACTACTATG
1 TTATTAATG-ATTTATTACTATA
* * *
9169556 TTATCATTGATTTATGACT-TA
1 TTATTAATGATTTATTACTATA
* * * *
9169577 TTTTTTAATTATTTATTACAAAA
1 -TTATTAATGATTTATTACTATA
* *
9169600 TTA-TCATAGATTTATTACTAAA
1 TTATTAAT-GATTTATTACTATA
9169622 TTAT
1 TTAT
9169626 ACATTATTCA
Statistics
Matches: 114, Mismatches: 37, Indels: 14
0.69 0.22 0.08
Matches are distributed among these distances:
21 13 0.11
22 84 0.74
23 17 0.15
ACGTcount: A:0.34, C:0.09, G:0.08, T:0.49
Consensus pattern (22 bp):
TTATTAATGATTTATTACTATA
Found at i:9169661 original size:21 final size:22
Alignment explanation
Indices: 9169635--9169722 Score: 81
Period size: 22 Copynumber: 4.0 Consensus size: 22
9169625 TACATTATTC
9169635 ACTATTAATTTATCAATGATTT
1 ACTATTAATTTATCAATGATTT
* *
9169657 A-TATTAAATTATCCATGATTT
1 ACTATTAATTTATCAATGATTT
* * *
9169678 ACTATT-ATGTTATCAGTAATTA
1 ACTATTAAT-TTATCAATGATTT
* * *
9169700 ACCACTAATTTATCAAAGATTT
1 ACTATTAATTTATCAATGATTT
9169722 A
1 A
9169723 TCACTAATTA
Statistics
Matches: 50, Mismatches: 13, Indels: 6
0.72 0.19 0.09
Matches are distributed among these distances:
21 20 0.40
22 28 0.56
23 2 0.04
ACGTcount: A:0.39, C:0.11, G:0.06, T:0.44
Consensus pattern (22 bp):
ACTATTAATTTATCAATGATTT
Found at i:9169666 original size:22 final size:22
Alignment explanation
Indices: 9169597--9169684 Score: 83
Period size: 22 Copynumber: 4.0 Consensus size: 22
9169587 ATTTATTACA
* *
9169597 AAATTATC-ATAGATTTATTACT
1 AAATTATCAAT-GATTTACTATT
* *
9169619 AAATTAT-ACATTATTCACTATT
1 AAATTATCA-ATGATTTACTATT
*
9169641 AATTTATCAATGATTTA-TATT
1 AAATTATCAATGATTTACTATT
*
9169662 AAATTATCCATGATTTACTATT
1 AAATTATCAATGATTTACTATT
9169684 A
1 A
9169685 TGTTATCAGT
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
21 19 0.36
22 31 0.58
23 3 0.06
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.47
Consensus pattern (22 bp):
AAATTATCAATGATTTACTATT
Found at i:9169682 original size:43 final size:45
Alignment explanation
Indices: 9169600--9169692 Score: 113
Period size: 43 Copynumber: 2.1 Consensus size: 45
9169590 TATTACAAAA
*
9169600 TTATC-ATAGATTTATTACTAAATTATACATTATTCACTATTAAT-
1 TTATCAATAGATTTATTACTAAATTATACATGATTCACTATT-ATG
* * *
9169644 TTATCAAT-GATTTA-TATTAAATTATCCATGATTTACTATTATG
1 TTATCAATAGATTTATTACTAAATTATACATGATTCACTATTATG
9169687 TTATCA
1 TTATCA
9169693 GTAATTAACC
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
42 2 0.05
43 28 0.65
44 11 0.26
45 2 0.05
ACGTcount: A:0.37, C:0.11, G:0.04, T:0.48
Consensus pattern (45 bp):
TTATCAATAGATTTATTACTAAATTATACATGATTCACTATTATG
Found at i:9169690 original size:22 final size:21
Alignment explanation
Indices: 9169635--9169692 Score: 64
Period size: 21 Copynumber: 2.7 Consensus size: 21
9169625 TACATTATTC
9169635 ACTATTAATTTATCAATGATTT
1 ACTATT-ATTTATCAATGATTT
* *
9169657 A-TATTAAATTATCCATGATTT
1 ACTATT-ATTTATCAATGATTT
9169678 ACTATTATGTTATCA
1 ACTATTAT-TTATCA
9169693 GTAATTAACC
Statistics
Matches: 30, Mismatches: 4, Indels: 4
0.79 0.11 0.11
Matches are distributed among these distances:
21 20 0.67
22 10 0.33
ACGTcount: A:0.36, C:0.10, G:0.05, T:0.48
Consensus pattern (21 bp):
ACTATTATTTATCAATGATTT
Found at i:9169885 original size:22 final size:22
Alignment explanation
Indices: 9169860--9169922 Score: 108
Period size: 22 Copynumber: 2.9 Consensus size: 22
9169850 ATTGAATATG
9169860 ATTTACTATTAAGTTATCACTA
1 ATTTACTATTAAGTTATCACTA
9169882 ATTTACTATTAAGTTATCACTA
1 ATTTACTATTAAGTTATCACTA
* *
9169904 ATTTATTATTAAATTATCA
1 ATTTACTATTAAGTTATCA
9169923 ATGATTAATT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 39 1.00
ACGTcount: A:0.38, C:0.11, G:0.03, T:0.48
Consensus pattern (22 bp):
ATTTACTATTAAGTTATCACTA
Found at i:9169933 original size:22 final size:22
Alignment explanation
Indices: 9169866--9169933 Score: 64
Period size: 22 Copynumber: 3.1 Consensus size: 22
9169856 TATGATTTAC
* * * *
9169866 TATTAAGTTATCACTAATTTAC
1 TATTAAATTATCAATAATTAAT
* * *
9169888 TATTAAGTTATCACTAATTTAT
1 TATTAAATTATCAATAATTAAT
*
9169910 TATTAAATTATCAATGATTAAT
1 TATTAAATTATCAATAATTAAT
9169932 TA
1 TA
9169934 CTATGTTAAC
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.40, C:0.09, G:0.04, T:0.47
Consensus pattern (22 bp):
TATTAAATTATCAATAATTAAT
Found at i:9170349 original size:22 final size:22
Alignment explanation
Indices: 9170324--9170372 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
9170314 ATAAGTTATT
* * *
9170324 ATTAATTTATGAATGATTTACC
1 ATTAAGTTATAAATAATTTACC
9170346 ATTAAGTTATAAATAATTTACC
1 ATTAAGTTATAAATAATTTACC
9170368 ATTAA
1 ATTAA
9170373 ATTGTTAATG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.43, C:0.08, G:0.06, T:0.43
Consensus pattern (22 bp):
ATTAAGTTATAAATAATTTACC
Found at i:9170365 original size:66 final size:67
Alignment explanation
Indices: 9170269--9170431 Score: 161
Period size: 66 Copynumber: 2.5 Consensus size: 67
9170259 TTATATTGTC
* * * * * * *
9170269 AATGATTTACTACTAAGCTATCACTAATTTAATACTAAATTGTCAATAAGT-TATTATTAATTTA
1 AATGATTTACCATTAAGTTATAACTAATTTAACACTAAATTGTCAATAA-TCTATTACTAAGTTA
9170333 -TG
65 TTG
* * * * *
9170335 AATGATTTACCATTAAGTTATAAATAATTTACCATTAAATTGTTAATGATCTATTACTAAGTTAT
1 AATGATTTACCATTAAGTTATAACTAATTTAACACTAAATTGTCAATAATCTATTACTAAGTTAT
9170400 TG
66 TG
* * *
9170402 -ATGATTTATCATAAAGTTAGAACTAATTTA
1 AATGATTTACCATTAAGTTATAACTAATTTA
9170432 CAACTAATTT
Statistics
Matches: 79, Mismatches: 16, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
65 1 0.01
66 76 0.96
67 2 0.03
ACGTcount: A:0.40, C:0.09, G:0.09, T:0.42
Consensus pattern (67 bp):
AATGATTTACCATTAAGTTATAACTAATTTAACACTAAATTGTCAATAATCTATTACTAAGTTAT
TG
Found at i:9170565 original size:19 final size:19
Alignment explanation
Indices: 9170520--9170582 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
9170510 AATTATTAGT
* *
9170520 AATTTACTATTACATTATT
1 AATTTACTATTAAATTATC
9170539 AGTGATTTACTATTAAATTATC
1 A---ATTTACTATTAAATTATC
* *
9170561 AATTTATTACTAAATTATC
1 AATTTACTATTAAATTATC
9170580 AAT
1 AAT
9170583 AATTTACTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 6
0.79 0.09 0.13
Matches are distributed among these distances:
19 20 0.54
22 17 0.46
ACGTcount: A:0.40, C:0.10, G:0.03, T:0.48
Consensus pattern (19 bp):
AATTTACTATTAAATTATC
Found at i:9170589 original size:63 final size:62
Alignment explanation
Indices: 9170479--9170624 Score: 161
Period size: 63 Copynumber: 2.3 Consensus size: 62
9170469 TTATTAACTA
* * *
9170479 ATTTACTATTAAATTTTACTAATTTAAAACAAATTATTAGTAATTTACTATTACATTA-T-TAGT
1 ATTTACTATTAAATTAT-C-AATTTAAAACAAATTATCAATAATTTACTATTACATTACTATA-T
** *
9170542 GATTTACTATTAAATTATCAATTTATTACTAAATTATCAATAATTTACTATTATATTACTATAT
1 -ATTTACTATTAAATTATCAATTTAAAAC-AAATTATCAATAATTTACTATTACATTACTATAT
* *
9170606 ATTTACTACTATATTATCA
1 ATTTACTATTAAATTATCA
9170625 TTGATTTACT
Statistics
Matches: 71, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
62 8 0.11
63 43 0.61
64 18 0.25
65 2 0.03
ACGTcount: A:0.40, C:0.10, G:0.02, T:0.48
Consensus pattern (62 bp):
ATTTACTATTAAATTATCAATTTAAAACAAATTATCAATAATTTACTATTACATTACTATAT
Found at i:9170760 original size:22 final size:22
Alignment explanation
Indices: 9170479--9170815 Score: 126
Period size: 22 Copynumber: 15.7 Consensus size: 22
9170469 TTATTAACTA
* *
9170479 ATTTACTATTAAATT-TTACTA
1 ATTTACTATTAAATTATTATTG
* ** * *
9170500 ATTTA-AAACAAATTATTAGTA
1 ATTTACTATTAAATTATTATTG
* *
9170521 ATTTACTATTACATTATTAGTG
1 ATTTACTATTAAATTATTATTG
*
9170543 ATTTACTATTAAATTATCA---
1 ATTTACTATTAAATTATTATTG
* * * * *
9170562 ATTTATTACTAAATTATCAATA
1 ATTTACTATTAAATTATTATTG
* *
9170584 ATTTACTATTATATTACTATAT-
1 ATTTACTATTAAATTATTAT-TG
* * *
9170606 ATTTACTACTATATTATCATTG
1 ATTTACTATTAAATTATTATTG
*
9170628 ATTTACTACTT-AATTTTTGATT-
1 ATTTACTA-TTAAATTATT-ATTG
**
9170650 ATTTACTACAAAATTATTATTG
1 ATTTACTATTAAATTATTATTG
* *
9170672 ATTT-CTTACTAAATT-TTACATG
1 ATTTAC-TATTAAATTATTA-TTG
* * * * **
9170694 ATTCACTATCAAGTTATCACAG
1 ATTTACTATTAAATTATTATTG
* * *
9170716 CTTTA-TTTTAAATTAGCTA-TG
1 ATTTACTATTAAATTA-TTATTG
9170737 ATTTACTATTAAATTATTATTG
1 ATTTACTATTAAATTATTATTG
* ** * * *
9170759 ATTAAC-ATTATGTTATCAATA
1 ATTTACTATTAAATTATTATTG
* * *
9170780 ATTTACTAATAAGTTA-TGTTG
1 ATTTACTATTAAATTATTATTG
*
9170801 ATTTACTTTTAAATT
1 ATTTACTATTAAATT
9170816 TTCAAATATT
Statistics
Matches: 232, Mismatches: 65, Indels: 38
0.69 0.19 0.11
Matches are distributed among these distances:
19 17 0.07
20 6 0.03
21 65 0.28
22 136 0.59
23 8 0.03
ACGTcount: A:0.37, C:0.10, G:0.05, T:0.49
Consensus pattern (22 bp):
ATTTACTATTAAATTATTATTG
Found at i:9170871 original size:22 final size:22
Alignment explanation
Indices: 9170843--9170895 Score: 72
Period size: 22 Copynumber: 2.4 Consensus size: 22
9170833 TAAATTATCA
* *
9170843 ATTATTTCTTACTAAGTTA-TT
1 ATTATTTATAACTAAGTTACTT
9170864 ATTGATTTATAACTAAGTTACTT
1 ATT-ATTTATAACTAAGTTACTT
9170887 ATTATTTAT
1 ATTATTTAT
9170896 TATTATCAAT
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
21 3 0.11
22 20 0.71
23 5 0.18
ACGTcount: A:0.32, C:0.08, G:0.06, T:0.55
Consensus pattern (22 bp):
ATTATTTATAACTAAGTTACTT
Found at i:9171247 original size:2 final size:2
Alignment explanation
Indices: 9171240--9171269 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
9171230 AAACAAAAAT
9171240 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
9171270 CACCTCAAAA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:9172245 original size:17 final size:16
Alignment explanation
Indices: 9172213--9172242 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9172203 ATGTGATTTG
9172213 ATTT-TTCTTCTTTTA
1 ATTTGTTCTTCTTTTA
9172228 ATTTGTTCTTCTTTT
1 ATTTGTTCTTCTTTT
9172243 TAAATTGTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 4 0.29
16 10 0.71
ACGTcount: A:0.10, C:0.13, G:0.03, T:0.73
Consensus pattern (16 bp):
ATTTGTTCTTCTTTTA
Found at i:9172250 original size:17 final size:16
Alignment explanation
Indices: 9172217--9172251 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 16
9172207 GATTTGATTT
*
9172217 TTCTTCTTTTAATTTG
1 TTCTTCTTTTAAATTG
9172233 TTCTTCTTTTTAAATTG
1 TTCTTC-TTTTAAATTG
9172250 TT
1 TT
9172252 TTTATTGTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 6 0.35
17 11 0.65
ACGTcount: A:0.14, C:0.11, G:0.06, T:0.69
Consensus pattern (16 bp):
TTCTTCTTTTAAATTG
Found at i:9172775 original size:2 final size:2
Alignment explanation
Indices: 9172770--9172800 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
9172760 TCTCTCAGTG
9172770 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
9172801 CACTAAAAAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9173304 original size:37 final size:37
Alignment explanation
Indices: 9173254--9173334 Score: 126
Period size: 37 Copynumber: 2.2 Consensus size: 37
9173244 CTCAGAACAA
* *
9173254 ATTTTATAAGTAATAATATTAAATTAATTTATTTTAG
1 ATTTTATAAGTAATAATATTAAATAAATATATTTTAG
* *
9173291 ATTTTATATGTAATAATATTAAATAAATATATTTTAT
1 ATTTTATAAGTAATAATATTAAATAAATATATTTTAG
9173328 ATTTTAT
1 ATTTTAT
9173335 TTTAATTTTG
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
37 40 1.00
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (37 bp):
ATTTTATAAGTAATAATATTAAATAAATATATTTTAG
Found at i:9173454 original size:72 final size:71
Alignment explanation
Indices: 9173356--9173689 Score: 232
Period size: 72 Copynumber: 4.7 Consensus size: 71
9173346 TATGAGTAGT
*
9173356 AATATTCACTAT-TTTTTATCTTAAAAATGTGGTTTTTGTTAAAATTTCATAATTTCAAAAATAA
1 AATATTCACTATGTTTTTATCTTAAAAATGTGGTTTTTGTTAAAATTTCAGAATTTCAAAAATAA
*
9173420 ATTTTC
66 AATTTC
* * *
9173426 AATATTCACTATGTTTCTTATCTTAAAAACGTTGTTTTT-TATAAAA-TTCTAGAATTTTAAAAA
1 AATATTCACTATGTTT-TTATCTTAAAAATGTGGTTTTTGT-TAAAATTTC-AGAATTTCAAAAA
* * *
9173489 TATATTTTT
63 TAAAATTTC
* * ** * * * * * * *
9173498 AACA-TC-CAAAATATTTATCTTTAAAATATAGTCTTTGTTAAAATTT-TGAAATTTCATAAATA
1 AATATTCACTATGTTTTTATCTTAAAAATGTGGTTTTTGTTAAAATTTCAG-AATTTCAAAAATA
9173560 AAATTTC
65 AAATTTC
* * * * * * ** * **
9173567 GATATCCACTAAGTTTCTTATCTTAGAAATATGGTTTTTTTTTTTAATTTTAGAATTTTGAAAAT
1 AATATTCACTATGTTT-TTATCTTAAAAATGTGG-TTTTTGTTAAAATTTCAGAATTTCAAAAAT
9173632 AAAATTTC
64 AAAATTTC
* * * * * *
9173640 AACATCCACTATGTTTTTTATTTTAAAAATGCGATCTTTGTT-AAATTTCA
1 AATATTCACTATG-TTTTTATCTTAAAAATGTGGTTTTTGTTAAAATTTCA
9173690 ATATCCACTA
Statistics
Matches: 200, Mismatches: 51, Indels: 25
0.72 0.18 0.09
Matches are distributed among these distances:
68 1 0.00
69 39 0.19
70 20 0.10
71 20 0.10
72 66 0.33
73 50 0.25
74 4 0.02
ACGTcount: A:0.37, C:0.10, G:0.07, T:0.47
Consensus pattern (71 bp):
AATATTCACTATGTTTTTATCTTAAAAATGTGGTTTTTGTTAAAATTTCAGAATTTCAAAAATAA
AATTTC
Found at i:9173688 original size:49 final size:49
Alignment explanation
Indices: 9173633--9173733 Score: 184
Period size: 49 Copynumber: 2.1 Consensus size: 49
9173623 TTTGAAAATA
9173633 AAATTTCAACATCCACTATGTTTTTTATTTTAAAAATGCGATCTTTGTT
1 AAATTTCAACATCCACTATGTTTTTTATTTTAAAAATGCGATCTTTGTT
* *
9173682 AAATTTCAATATCCACTATGTTTTTTATTTTAAAAATGTGATCTTTGTT
1 AAATTTCAACATCCACTATGTTTTTTATTTTAAAAATGCGATCTTTGTT
9173731 AAA
1 AAA
9173734 ATTTTAGAAT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.33, C:0.12, G:0.08, T:0.48
Consensus pattern (49 bp):
AAATTTCAACATCCACTATGTTTTTTATTTTAAAAATGCGATCTTTGTT
Found at i:9173806 original size:120 final size:122
Alignment explanation
Indices: 9173558--9173806 Score: 276
Period size: 120 Copynumber: 2.1 Consensus size: 122
9173548 ATTTCATAAA
* * * * **
9173558 TAAAATTTCGATATCCACTAAGTTTCTTATCTTAGAAATATGGTTTTTTTTTTTAATTTTAGAAT
1 TAAAATTTCAATATCCACTAAGTTTCTTATCTTAGAAATATGGATCTTTGTTAAAATTTTAGAAT
* * * * * *
9173623 TTTGAAAATAAAATTTCAACATCCACTATGTTTTTTATTTTAAAAATGCGATCTTTGT
66 TTTCAAAATAAAATTTCAACATCCACTAAGTTTTTTATCTTAAAAAT-CAATATTTAT
* * *
9173681 T-AAATTTCAATATCCACTATGTTTTTTATTTTA-AAA-ATGTGATCTTTGTTAAAATTTTAGAA
1 TAAAATTTCAATATCCACTAAGTTTCTTATCTTAGAAATATG-GATCTTTGTTAAAATTTTAGAA
*
9173743 -TTTCAAAATAAAATTTCAATATCCACTAAG-TTTTTATCTTAAGAACAT-AATATTTAT
65 TTTTCAAAATAAAATTTCAACATCCACTAAGTTTTTTATCTTAA-AA-ATCAATATTTAT
9173800 TAAAATT
1 TAAAATT
9173807 CCAAAATTTT
Statistics
Matches: 106, Mismatches: 16, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
119 18 0.17
120 37 0.35
121 22 0.21
122 28 0.26
123 1 0.01
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (122 bp):
TAAAATTTCAATATCCACTAAGTTTCTTATCTTAGAAATATGGATCTTTGTTAAAATTTTAGAAT
TTTCAAAATAAAATTTCAACATCCACTAAGTTTTTTATCTTAAAAATCAATATTTAT
Found at i:9173822 original size:71 final size:71
Alignment explanation
Indices: 9173682--9173828 Score: 170
Period size: 71 Copynumber: 2.1 Consensus size: 71
9173672 GATCTTTGTT
* * ** * * * ** * *
9173682 AAATTTCAATATCCACTATGTTTTTTATTTTAAAAATGTGATCTTTGTTAAAATTTTAGAATTTC
1 AAATTTCAATATCCACTAAGTTTTTTATCTTAAAAACATAATATTTATTAAAATTCCAAAATTTA
9173747 AAAATA
66 AAAATA
*
9173753 AAATTTCAATATCCACTAAG-TTTTTATCTTAAGAACATAATATTTATTAAAATTCCAAAATTTT
1 AAATTTCAATATCCACTAAGTTTTTTATCTTAAAAACATAATATTTATTAAAATTCCAAAA-TTT
9173817 AAAAATA
65 AAAAATA
9173824 AAATT
1 AAATT
9173829 CATTTTTCAA
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
70 30 0.48
71 33 0.52
ACGTcount: A:0.43, C:0.10, G:0.05, T:0.43
Consensus pattern (71 bp):
AAATTTCAATATCCACTAAGTTTTTTATCTTAAAAACATAATATTTATTAAAATTCCAAAATTTA
AAAATA
Found at i:9173888 original size:15 final size:16
Alignment explanation
Indices: 9173856--9173917 Score: 54
Period size: 16 Copynumber: 3.9 Consensus size: 16
9173846 TACAATTAAT
9173856 ATTTAAAATAATTTTA
1 ATTTAAAATAATTTTA
*
9173872 ATTTCAAATAA-TTTA
1 ATTTAAAATAATTTTA
*** *
9173887 ATGTTATTGTATTTTTA
1 AT-TTAAAATAATTTTA
*
9173904 ATTTTAAATAATTT
1 ATTTAAAATAATTT
9173918 AATATTATTT
Statistics
Matches: 33, Mismatches: 11, Indels: 4
0.69 0.23 0.08
Matches are distributed among these distances:
15 6 0.18
16 21 0.64
17 6 0.18
ACGTcount: A:0.40, C:0.02, G:0.03, T:0.55
Consensus pattern (16 bp):
ATTTAAAATAATTTTA
Found at i:9173945 original size:20 final size:20
Alignment explanation
Indices: 9173891--9173946 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 20
9173881 AATTTAATGT
*
9173891 TATTGTATTTTTAATTTTAAA
1 TATTGTATTTTT-ATTTAAAA
* *
9173912 TAATT-TAATATTATTTAAAA
1 T-ATTGTATTTTTATTTAAAA
9173932 TATTGTATTTTTATT
1 TATTGTATTTTTATT
9173947 AAATAAATTG
Statistics
Matches: 28, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
19 3 0.11
20 16 0.57
21 6 0.21
22 3 0.11
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.61
Consensus pattern (20 bp):
TATTGTATTTTTATTTAAAA
Found at i:9174524 original size:22 final size:22
Alignment explanation
Indices: 9174477--9174529 Score: 63
Period size: 22 Copynumber: 2.4 Consensus size: 22
9174467 ATTATTATTT
* *
9174477 ATTTACTATTAAGTTATCTCTA
1 ATTTATTATAAAGTTATCTCTA
*
9174499 ATTTATTATAAAGTTATC-CATG
1 ATTTATTATAAAGTTATCTC-TA
9174521 ATTTATTAT
1 ATTTATTAT
9174530 TATTACTAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
21 1 0.04
22 26 0.96
ACGTcount: A:0.34, C:0.09, G:0.06, T:0.51
Consensus pattern (22 bp):
ATTTATTATAAAGTTATCTCTA
Found at i:9174583 original size:42 final size:42
Alignment explanation
Indices: 9174537--9174617 Score: 101
Period size: 41 Copynumber: 1.9 Consensus size: 42
9174527 TATTATTACT
*
9174537 AATTAACTATTAAGTTATTGATAATT-ATTACAAAGTTATATG
1 AATT-ACTATTAAGTTATTAATAATTAATTACAAAGTTATATG
* * * *
9174579 AATTACTTTTAAGTTTTTAATGATTAATTACTAAGTTAT
1 AATTACTATTAAGTTATTAATAATTAATTACAAAGTTAT
9174618 CAATTATCTA
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
41 17 0.52
42 16 0.48
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (42 bp):
AATTACTATTAAGTTATTAATAATTAATTACAAAGTTATATG
Found at i:9174898 original size:41 final size:41
Alignment explanation
Indices: 9174853--9174933 Score: 162
Period size: 41 Copynumber: 2.0 Consensus size: 41
9174843 TTATACTAAT
9174853 GCAAGTATCAAAACTAAATTAAATAAATATATACAATATAA
1 GCAAGTATCAAAACTAAATTAAATAAATATATACAATATAA
9174894 GCAAGTATCAAAACTAAATTAAATAAATATATACAATATA
1 GCAAGTATCAAAACTAAATTAAATAAATATATACAATATA
9174934 TATTAAATGA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 40 1.00
ACGTcount: A:0.58, C:0.10, G:0.05, T:0.27
Consensus pattern (41 bp):
GCAAGTATCAAAACTAAATTAAATAAATATATACAATATAA
Found at i:9175968 original size:81 final size:81
Alignment explanation
Indices: 9175830--9175990 Score: 241
Period size: 81 Copynumber: 2.0 Consensus size: 81
9175820 GCGGACCACT
* * * * *
9175830 TAGATTATTTCTTGGAAATTGTTATTATAGAAAATTCATAAGAGTGTTGAATCATTCATGTAATT
1 TAGATTATTTCTTAGAAATTGTTATTATAGAAAATTCATAAGAATATCGAATCATTCATGGAATT
9175895 GCTAGTATCTAGCAAC
66 GCTAGTATCTAGCAAC
* * *
9175911 TAGATTGTTTCTTAGAAATTGTTATTATAGAAAATTCATAAGAATATCGAATTATTCATGGAGTT
1 TAGATTATTTCTTAGAAATTGTTATTATAGAAAATTCATAAGAATATCGAATCATTCATGGAATT
*
9175976 GCTAGTATCTGGCAA
66 GCTAGTATCTAGCAA
9175991 GCTTTTAGTC
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 71 1.00
ACGTcount: A:0.35, C:0.09, G:0.17, T:0.39
Consensus pattern (81 bp):
TAGATTATTTCTTAGAAATTGTTATTATAGAAAATTCATAAGAATATCGAATCATTCATGGAATT
GCTAGTATCTAGCAAC
Found at i:9176903 original size:160 final size:158
Alignment explanation
Indices: 9176627--9177192 Score: 608
Period size: 160 Copynumber: 3.6 Consensus size: 158
9176617 AATTTTATAG
* * * * *
9176627 TTTAATATCATATAGTT-AAGATATCTAAGTTATCAAAACAAAAATATACTAGCATATTTACAAT
1 TTTAATATCATATA-TTCAAGCTATATAAGTCATTAAAACAAAAATATACCAGCATATTTACAAT
* * ** *
9176691 TTTA-CCCTTTACAACACCAAAAGTCTAAAAACACATAAACTATAACATTTTCTCACATATCAAG
65 TTTATCCTTTTACAGCACCAAAAGTCTAAAAACACA-AAACCGTAATATTTTCTCACATATCAAG
* * * *
9176755 TATGAAAGTCAACTTCAACAATTTAAACAAA
129 CATGCAA-CCAACTTCAACAATTTGAACAAA
* * *
9176786 TTTAATATCATATATTCGAGCTATATAAGTCATTGAAACAGAAAATATACCAGCATATTTATAAT
1 TTTAATATCATATATTCAAGCTATATAAGTCATTAAAACA-AAAATATACCAGCATATTTACAAT
* **
9176851 TTTATCCTTTTACGGCATTAAAAGTCATAAAAACAC-AAACCGTAATATTTTCTCACATATCAAG
65 TTTATCCTTTTACAGCACCAAAAGTC-TAAAAACACAAAACCGTAATATTTTCTCACATATCAAG
* *
9176915 CATGGCAACCAATTTCAACAATTTGAACAAG
129 CAT-GCAACCAACTTCAACAATTTGAACAAA
* * * *
9176946 TTTAATATCATATATTCAAGCTATATAAGTCATTAAAATAGAAATATATCAGCATATTTACAGTT
1 TTTAATATCATATATTCAAGCTATATAAGTCATTAAAACAAAAATATACCAGCATATTTACAATT
* * * * * *
9177011 TT-GCCTTTTTATAGTACCAAAAGTTCTAAAAACACATAAACCGTAATATTTTCCCATATATTAA
66 TTATCC-TTTTACAGCACCAAAAG-TCTAAAAACACA-AAACCGTAATATTTTCTCACATATCAA
*
9177075 GCACGGCAACCAACTTCAACAATTTGAACAAGA
128 GCA-TGCAACCAACTTCAACAATTTGAACAA-A
* ** * *
9177108 --T--TATCATATATTCAAGCTATCTAAGTCATTAAAACAAAAATATATTAGCATATTTATAGTT
1 TTTAATATCATATATTCAAGCTATATAAGTCATTAAAACAAAAATATACCAGCATATTTACAATT
* * *
9177169 TAATCCTTTTATAACACCAAAAGT
66 TTATCCTTTTACAGCACCAAAAGT
9177193 TAGCTAGTAA
Statistics
Matches: 345, Mismatches: 50, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
157 1 0.00
158 75 0.22
159 77 0.22
160 112 0.32
161 71 0.21
162 9 0.03
ACGTcount: A:0.43, C:0.17, G:0.07, T:0.33
Consensus pattern (158 bp):
TTTAATATCATATATTCAAGCTATATAAGTCATTAAAACAAAAATATACCAGCATATTTACAATT
TTATCCTTTTACAGCACCAAAAGTCTAAAAACACAAAACCGTAATATTTTCTCACATATCAAGCA
TGCAACCAACTTCAACAATTTGAACAAA
Found at i:9179797 original size:102 final size:102
Alignment explanation
Indices: 9179691--9179879 Score: 256
Period size: 102 Copynumber: 1.9 Consensus size: 102
9179681 TTATTTTAAG
* *
9179691 AAAATTCATTAA-ACCTTCCAATAGTTTGGTAAGATCTAATTCAATATTTAAATCATCCAATAGA
1 AAAATTCATTAAGACC-TCCAATAGTTTGATAAGATCTAATTCAAGATTTAAATCATCCAATAGA
*
9179755 TTGATAGGATTGT-AAATTTTATTATTATTTTTTTAAAA
65 TTGATAGAATT-TAAAATTTTATTATTATTTTTTTAAAA
* * * * * * *
9179793 AAAATTCGTTAAGTCCTCTAATATTTTGATAAGATTTAATTCAAGATTTAAATCTTCCAATAGTT
1 AAAATTCATTAAGACCTCCAATAGTTTGATAAGATCTAATTCAAGATTTAAATCATCCAATAGAT
9179858 TGATAGAATTTAAAATTTTATT
66 TGATAGAATTTAAAATTTTATT
9179880 TTAAAAAAAA
Statistics
Matches: 75, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
101 1 0.01
102 72 0.96
103 2 0.03
ACGTcount: A:0.39, C:0.10, G:0.09, T:0.43
Consensus pattern (102 bp):
AAAATTCATTAAGACCTCCAATAGTTTGATAAGATCTAATTCAAGATTTAAATCATCCAATAGAT
TGATAGAATTTAAAATTTTATTATTATTTTTTTAAAA
Found at i:9181229 original size:84 final size:84
Alignment explanation
Indices: 9181098--9181368 Score: 230
Period size: 84 Copynumber: 3.2 Consensus size: 84
9181088 GAAATTACAC
* * * * * *
9181098 TGAAAGGTCTTATAAATCTCGA-CTCTAAAATAGATTTAGCTCAAAAGATTTA-CAAATCTTGTT
1 TGAAA-GTCTTACAAATCTTGATCT-TAAAATAGATTCACCTCAAAAGACTTATC-AATCTTG-C
*
9181161 CAGAAG-ACTTAGAGATTATGTT
62 CAGAAGAACTTACAGATTATGTT
* ** *
9181183 TTAAAGTCTTACAAATCTTGATCTTAAAATAGATTCACCTTGAAAGACTTATCAATCTTGCCTGA
1 TGAAAGTCTTACAAATCTTGATCTTAAAATAGATTCACCTCAAAAGACTTATCAATCTTGCCAGA
*
9181248 AGAATTTACAGATTATGTT
66 AGAACTTACAGATTATGTT
* * * * * *
9181267 TGAAGGTCTTACAAATCTTGATTTTAAAACAGATTCAGCCT-AAAAAACTTATGAATGTTGCTC-
1 TGAAAGTCTTACAAATCTTGATCTTAAAATAGATTCA-CCTCAAAAGACTTATCAATCTTGC-CA
* * *
9181330 GAA-AGGCTTAGAGATTATGCT
64 GAAGA-ACTTACAGATTATGTT
* *
9181351 CGAAAGGCTTACAAATCT
1 TGAAAGTCTTACAAATCT
9181369 CGACTCTAAA
Statistics
Matches: 153, Mismatches: 27, Indels: 13
0.79 0.14 0.07
Matches are distributed among these distances:
83 6 0.04
84 136 0.89
85 11 0.07
ACGTcount: A:0.37, C:0.15, G:0.15, T:0.34
Consensus pattern (84 bp):
TGAAAGTCTTACAAATCTTGATCTTAAAATAGATTCACCTCAAAAGACTTATCAATCTTGCCAGA
AGAACTTACAGATTATGTT
Found at i:9181656 original size:34 final size:34
Alignment explanation
Indices: 9181618--9181694 Score: 93
Period size: 34 Copynumber: 2.3 Consensus size: 34
9181608 TTTACCAGAC
*
9181618 TTTTAAATTCGTAAGAA-TGTAAGATTCATAAGAT
1 TTTTAAATTCGTAAGAACTGTAA-ATTCATAAGAG
* * *
9181652 TTTTAGATTCGTAAGAACTTTAAATTCGTAAGAG
1 TTTTAAATTCGTAAGAACTGTAAATTCATAAGAG
*
9181686 TTTCAAATT
1 TTTTAAATT
9181695 TGCAAGATTT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
34 32 0.89
35 4 0.11
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.40
Consensus pattern (34 bp):
TTTTAAATTCGTAAGAACTGTAAATTCATAAGAG
Found at i:9181673 original size:17 final size:16
Alignment explanation
Indices: 9181619--9181694 Score: 71
Period size: 17 Copynumber: 4.5 Consensus size: 16
9181609 TTACCAGACT
9181619 TTTAAATTCGTAAGAA
1 TTTAAATTCGTAAGAA
* * *
9181635 TGTAAGATTCATAAGATT
1 TTTAA-ATTCGTAAGA-A
*
9181653 TTTAGATTCGTAAGAA
1 TTTAAATTCGTAAGAA
*
9181669 CTTTAAATTCGTAAGAG
1 -TTTAAATTCGTAAGAA
9181686 TTTCAAATT
1 TTT-AAATT
9181695 TGCAAGATTT
Statistics
Matches: 47, Mismatches: 9, Indels: 7
0.75 0.14 0.11
Matches are distributed among these distances:
16 7 0.15
17 37 0.79
18 3 0.06
ACGTcount: A:0.38, C:0.08, G:0.14, T:0.39
Consensus pattern (16 bp):
TTTAAATTCGTAAGAA
Found at i:9182064 original size:22 final size:22
Alignment explanation
Indices: 9182038--9182312 Score: 126
Period size: 22 Copynumber: 12.2 Consensus size: 22
9182028 TTATATTTGA
* *
9182038 AAAATTTTAGAGATTTACATTC
1 AAAATTTTAAAGATTCACATTC
***
9182060 AAAA-TTTAAAGATTTTTATTC
1 AAAATTTTAAAGATTCACATTC
* * *
9182081 TAAAAATTTAGAGATTCACATTG
1 -AAAATTTTAAAGATTCACATTC
* *
9182104 AAAATTTCAAAAATTCACATTC
1 AAAATTTTAAAGATTCACATTC
* * **
9182126 AAAAACTTTAACA-TTTCACAACC
1 -AAAATTTTAA-AGATTCACATTC
* ** *
9182149 AAAATTTCAAAGATTCTTATTTA
1 AAAATTTTAAAGATTCACA-TTC
* *
9182172 AAAATTTTCAAGATTTCACATCC
1 AAAATTTTAAAGA-TTCACATTC
* * *
9182195 AAAATTTCAAATATTCACATTTGA
1 AAAATTTTAAAGATTCACA-TT-C
*
9182219 AAAATTTT-AAGAATTCCCATTC
1 AAAATTTTAAAG-ATTCACATTC
* * * *
9182241 AAAATTTCAAAAATTTACCTTC
1 AAAATTTTAAAGATTCACATTC
*
9182263 AAAAATTTTTAGAA-ATTCACATAC
1 -AAAA-TTTTA-AAGATTCACATTC
* * * *
9182287 AAAGTTTCAAATACTCACATTC
1 AAAATTTTAAAGATTCACATTC
9182309 AAAA
1 AAAA
9182313 AATTAGAGAT
Statistics
Matches: 183, Mismatches: 55, Indels: 30
0.68 0.21 0.11
Matches are distributed among these distances:
21 17 0.09
22 72 0.39
23 63 0.34
24 29 0.16
25 2 0.01
ACGTcount: A:0.45, C:0.15, G:0.04, T:0.36
Consensus pattern (22 bp):
AAAATTTTAAAGATTCACATTC
Found at i:9182200 original size:46 final size:45
Alignment explanation
Indices: 9182022--9182361 Score: 228
Period size: 46 Copynumber: 7.6 Consensus size: 45
9182012 GGATCACATC
*
9182022 CAAA-ATTTATATTTGAAAAATTTTAGAGATTT-ACATTCAAAATTT
1 CAAAGATTCATATTT-AAAAATTTTA-AGATTTCACATTCAAAATTT
** *
9182067 -AAAGATTTTTATTCTAAAAA-TTTAGAGA-TTCACATTGAAAATTT
1 CAAAGATTCATATT-TAAAAATTTTA-AGATTTCACATTCAAAATTT
* * * * * **
9182111 CAAAAATTCACATTCAAAAACTTTAACATTTCACAACCAAAATTT
1 CAAAGATTCATATTTAAAAATTTTAAGATTTCACATTCAAAATTT
* *
9182156 CAAAGATTCTTATTTAAAAATTTTCAAGATTTCACATCCAAAATTT
1 CAAAGATTCATATTTAAAAATTTT-AAGATTTCACATTCAAAATTT
* * * *
9182202 CAAATATTCACATTTGAAAAATTTTAAGAATTCCCATTCAAAATTT
1 CAAAGATTCATATTT-AAAAATTTTAAGATTTCACATTCAAAATTT
* * ** * * * * *
9182248 CAAAAATTTACCTTCAAAAATTTTTAGAAATTCACATACAAAGTTT
1 CAAAGATTCATATTTAAAAATTTTAAG-ATTTCACATTCAAAATTT
* * * * * * *
9182294 CAAATACTCACATTCAAAAA-ATTAGAGATTT-ACATTTAAAGTTT
1 CAAAGATTCATATTTAAAAATTTTA-AGATTTCACATTCAAAATTT
* * *
9182338 CAAAGGTT-ATTTTTCAAAATTTTA
1 CAAAGATTCATATTTAAAAATTTTA
9182362 TGGCTTCGCA
Statistics
Matches: 235, Mismatches: 49, Indels: 23
0.77 0.16 0.07
Matches are distributed among these distances:
43 9 0.04
44 49 0.21
45 74 0.31
46 94 0.40
47 9 0.04
ACGTcount: A:0.44, C:0.13, G:0.05, T:0.37
Consensus pattern (45 bp):
CAAAGATTCATATTTAAAAATTTTAAGATTTCACATTCAAAATTT
Found at i:9185362 original size:133 final size:132
Alignment explanation
Indices: 9185166--9185418 Score: 355
Period size: 133 Copynumber: 1.9 Consensus size: 132
9185156 ATGCATATGT
* * * **
9185166 AAATACATGTATGCAATACATAGTAACAACAAGAATTCATATTTAAAACTAGGTACAAAATTGAA
1 AAATACATGTATACAATACATAATAACAACAAAAATTCATATCCAAAACTAGGTACAAAATTGAA
* * * *
9185231 ACGGCAAAGATTTTTCCAAACAAATGAAATAACGTACATATAAAGATGTTTACATGGATCTATAT
66 AAGGCAAAGATTTTTCCAAAAAAATAAAATAACGTACATACAAAGATGTTTACATGGATCTATAT
9185296 AC
131 AC
* * *
9185298 AAATACATGTATACAATACATAAATGAA-AACAAAAATTTATATCCAAAACTATGTGCAAAATTG
1 AAATACATGTATACAATACAT-AAT-AACAACAAAAATTCATATCCAAAACTAGGTACAAAATTG
* *
9185362 AAAAGGCAAAGATTTTTCCAAAAAAATAAAATAATGTATATACAAAGATGTTTACAT
64 AAAAGGCAAAGATTTTTCCAAAAAAATAAAATAACGTACATACAAAGATGTTTACAT
9185419 ACATGTACGC
Statistics
Matches: 105, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
132 20 0.19
133 83 0.79
134 2 0.02
ACGTcount: A:0.50, C:0.12, G:0.11, T:0.27
Consensus pattern (132 bp):
AAATACATGTATACAATACATAATAACAACAAAAATTCATATCCAAAACTAGGTACAAAATTGAA
AAGGCAAAGATTTTTCCAAAAAAATAAAATAACGTACATACAAAGATGTTTACATGGATCTATAT
AC
Found at i:9185818 original size:18 final size:17
Alignment explanation
Indices: 9185787--9185830 Score: 52
Period size: 17 Copynumber: 2.5 Consensus size: 17
9185777 ATTAATATGC
9185787 AAATAACATATACAAAGCA
1 AAATAA-ATATAC-AAGCA
* *
9185806 AAATAAATTTACAAGTA
1 AAATAAATATACAAGCA
9185823 AAATAAAT
1 AAATAAAT
9185831 GTCTTATAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 12 0.52
18 5 0.22
19 6 0.26
ACGTcount: A:0.64, C:0.09, G:0.05, T:0.23
Consensus pattern (17 bp):
AAATAAATATACAAGCA
Found at i:9187788 original size:19 final size:19
Alignment explanation
Indices: 9187747--9187789 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 19
9187737 TAAAAACTAG
* *
9187747 ATAAATAAAAGACTAAAAC
1 ATAAAAAAAAGACTAAAAA
9187766 ATAAAAAAAAGA-TAAATAA
1 ATAAAAAAAAGACTAAA-AA
9187785 ATAAA
1 ATAAA
9187790 TAAGAAAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 4 0.19
19 17 0.81
ACGTcount: A:0.74, C:0.05, G:0.05, T:0.16
Consensus pattern (19 bp):
ATAAAAAAAAGACTAAAAA
Found at i:9188499 original size:34 final size:34
Alignment explanation
Indices: 9188456--9188523 Score: 136
Period size: 34 Copynumber: 2.0 Consensus size: 34
9188446 ATAAAGCATT
9188456 TATCATATACCTTTTTAACTTAAATTGTATGATA
1 TATCATATACCTTTTTAACTTAAATTGTATGATA
9188490 TATCATATACCTTTTTAACTTAAATTGTATGATA
1 TATCATATACCTTTTTAACTTAAATTGTATGATA
9188524 AACACTAACT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 34 1.00
ACGTcount: A:0.35, C:0.12, G:0.06, T:0.47
Consensus pattern (34 bp):
TATCATATACCTTTTTAACTTAAATTGTATGATA
Found at i:9192909 original size:32 final size:32
Alignment explanation
Indices: 9192868--9192930 Score: 126
Period size: 32 Copynumber: 2.0 Consensus size: 32
9192858 TCATCGAGTT
9192868 TTACATAGACATTTCCTCAACTATCAATTGTC
1 TTACATAGACATTTCCTCAACTATCAATTGTC
9192900 TTACATAGACATTTCCTCAACTATCAATTGT
1 TTACATAGACATTTCCTCAACTATCAATTGT
9192931 TTCAATCAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.32, C:0.24, G:0.06, T:0.38
Consensus pattern (32 bp):
TTACATAGACATTTCCTCAACTATCAATTGTC
Found at i:9193374 original size:2 final size:2
Alignment explanation
Indices: 9193338--9193364 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
9193328 TATCCATCTT
9193338 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
9193365 GAAGATATAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:9193400 original size:17 final size:17
Alignment explanation
Indices: 9193378--9193432 Score: 51
Period size: 17 Copynumber: 3.3 Consensus size: 17
9193368 GATATATTAG
9193378 AAAAATATGTAAAACT-
1 AAAAATATGTAAAACTA
** * *
9193394 AAAAA-ATCCAAGATTA
1 AAAAATATGTAAAACTA
9193410 GAAAAATATGTAAAACTA
1 -AAAAATATGTAAAACTA
9193428 AAAAA
1 AAAAA
9193433 AAAATGTACA
Statistics
Matches: 28, Mismatches: 8, Indels: 5
0.68 0.20 0.12
Matches are distributed among these distances:
15 6 0.21
16 5 0.18
17 10 0.36
18 7 0.25
ACGTcount: A:0.65, C:0.07, G:0.07, T:0.20
Consensus pattern (17 bp):
AAAAATATGTAAAACTA
Done.