Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 45 of 195
Found at i:9388360 original size:17 final size:16
Alignment explanation
Indices: 9388338--9388377 Score: 53
Period size: 17 Copynumber: 2.4 Consensus size: 16
9388328 ATTTATTTTT
9388338 ATATTTACATTAAAAAA
1 ATATTTACATT-AAAAA
*
9388355 ATATTTTATATTAAAAA
1 ATA-TTTACATTAAAAA
9388372 ATATTT
1 ATATTT
9388378 TATTAATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 3 0.14
17 11 0.52
18 7 0.33
ACGTcount: A:0.53, C:0.03, G:0.00, T:0.45
Consensus pattern (16 bp):
ATATTTACATTAAAAA
Found at i:9388718 original size:25 final size:22
Alignment explanation
Indices: 9388665--9388718 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
9388655 ATTTATGAAA
*
9388665 AATATTATTATTAATATAAATT
1 AATATTTTTATTAATATAAATT
*
9388687 -ATGTTTTTAATTATATATAAATAT
1 AATATTTTT-ATTA-ATATAAAT-T
9388711 AATATTTT
1 AATATTTT
9388719 ATCAAATTAA
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
21 6 0.24
22 4 0.16
23 8 0.32
24 1 0.04
25 6 0.24
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (22 bp):
AATATTTTTATTAATATAAATT
Found at i:9388773 original size:19 final size:17
Alignment explanation
Indices: 9388737--9388781 Score: 56
Period size: 19 Copynumber: 2.6 Consensus size: 17
9388727 AAGGTATTAA
*
9388737 ATAATAATTATATCAAT
1 ATAATAATTATATAAAT
9388754 ATAATACATATATATAAAT
1 ATAATA-AT-TATATAAAT
9388773 ATAA-AATTA
1 ATAATAATTA
9388782 AATACATAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
16 2 0.08
17 8 0.32
18 3 0.12
19 12 0.48
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (17 bp):
ATAATAATTATATAAAT
Found at i:9389506 original size:23 final size:24
Alignment explanation
Indices: 9389463--9389511 Score: 59
Period size: 22 Copynumber: 2.1 Consensus size: 24
9389453 TTTTAAAATA
9389463 AAAATATATTAATTCTAATTAATTT
1 AAAATATATTAATTCTAATT-ATTT
9389488 AAAATA-A-TAATT-TATATTATTT
1 AAAATATATTAATTCTA-ATTATTT
9389510 AA
1 AA
9389512 TAAAAAATAT
Statistics
Matches: 23, Mismatches: 0, Indels: 5
0.82 0.00 0.18
Matches are distributed among these distances:
22 8 0.35
23 8 0.35
24 1 0.04
25 6 0.26
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (24 bp):
AAAATATATTAATTCTAATTATTT
Found at i:9390039 original size:29 final size:30
Alignment explanation
Indices: 9389976--9390040 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 30
9389966 AATTATATCT
* *
9389976 TATATAAATATAATATTTTTATTAAATTAA
1 TATATAAATATAATAATCTTATTAAATTAA
* *
9390006 GATATTAA-ATAATAATCTTATT-AATATAA
1 TATATAAATATAATAATCTTATTAAAT-TAA
9390035 TATATA
1 TATATA
9390041 TATGAATATT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
28 3 0.11
29 19 0.68
30 6 0.21
ACGTcount: A:0.51, C:0.02, G:0.02, T:0.46
Consensus pattern (30 bp):
TATATAAATATAATAATCTTATTAAATTAA
Found at i:9390417 original size:16 final size:16
Alignment explanation
Indices: 9390396--9390429 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
9390386 TTATAGATTT
9390396 AAAAAAACAAAACTAA
1 AAAAAAACAAAACTAA
* *
9390412 AAAAAAATAAAATTAA
1 AAAAAAACAAAACTAA
9390428 AA
1 AA
9390430 GAAGCAAAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.82, C:0.06, G:0.00, T:0.12
Consensus pattern (16 bp):
AAAAAAACAAAACTAA
Found at i:9390627 original size:19 final size:18
Alignment explanation
Indices: 9390579--9390649 Score: 61
Period size: 19 Copynumber: 3.8 Consensus size: 18
9390569 TATTTAATAT
*
9390579 GAAAATTAAAAAATTAAA
1 GAAAATTAAAAAAATAAA
* * *
9390597 AAAAAGATAAAAAGATAAA
1 GAAAA-TTAAAAAAATAAA
*
9390616 GAAAATTAAAAAAAAAAA
1 GAAAATTAAAAAAATAAA
* *
9390634 CAACAAATAAAAAAAT
1 GAA-AATTAAAAAAAT
9390650 GAAAAACTTA
Statistics
Matches: 40, Mismatches: 11, Indels: 3
0.74 0.20 0.06
Matches are distributed among these distances:
18 16 0.40
19 24 0.60
ACGTcount: A:0.77, C:0.03, G:0.06, T:0.14
Consensus pattern (18 bp):
GAAAATTAAAAAAATAAA
Found at i:9390643 original size:29 final size:28
Alignment explanation
Indices: 9390580--9390655 Score: 84
Period size: 29 Copynumber: 2.7 Consensus size: 28
9390570 ATTTAATATG
*
9390580 AAAATTAAAAAATTAAAAAAAAGATAAA
1 AAAATAAAAAAATTAAAAAAAAGATAAA
*
9390608 AAGATAAAGAAAATTAAAAAAAA-A-AACA
1 AAAATAAA-AAAATTAAAAAAAAGATAA-A
*
9390636 ACAAATAAAAAAATGAAAAA
1 A-AAATAAAAAAATTAAAAA
9390656 CTTATTAAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
27 2 0.05
28 19 0.46
29 20 0.49
ACGTcount: A:0.79, C:0.03, G:0.05, T:0.13
Consensus pattern (28 bp):
AAAATAAAAAAATTAAAAAAAAGATAAA
Found at i:9391062 original size:10 final size:9
Alignment explanation
Indices: 9391039--9391072 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
9391029 TTAATCGTAT
*
9391039 TTAATTATG
1 TTAATTATA
9391048 TTAATTATA
1 TTAATTATA
9391057 TATAATTATA
1 T-TAATTATA
9391067 TTAATT
1 TTAATT
9391073 GTGTTGTGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
9 14 0.61
10 9 0.39
ACGTcount: A:0.41, C:0.00, G:0.03, T:0.56
Consensus pattern (9 bp):
TTAATTATA
Found at i:9391690 original size:16 final size:16
Alignment explanation
Indices: 9391671--9391719 Score: 55
Period size: 16 Copynumber: 3.1 Consensus size: 16
9391661 ATTATTAAAA
*
9391671 TTTTAAATTATATTAT
1 TTTTATATTATATTAT
*
9391687 TTTTATATTTTA-TAT
1 TTTTATATTATATTAT
*
9391702 TATTCATATTATATTAT
1 T-TTTATATTATATTAT
9391719 T
1 T
9391720 ATGTTACATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
15 4 0.15
16 19 0.70
17 4 0.15
ACGTcount: A:0.33, C:0.02, G:0.00, T:0.65
Consensus pattern (16 bp):
TTTTATATTATATTAT
Found at i:9396803 original size:22 final size:23
Alignment explanation
Indices: 9396778--9396821 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 23
9396768 TTACTTTGTA
* *
9396778 AATTTTAATCAA-TCAACCCCTG
1 AATTATAATCAATTAAACCCCTG
9396800 AATTATAATCAATTAAACCCCT
1 AATTATAATCAATTAAACCCCT
9396822 AAAAGAATCT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
22 11 0.58
23 8 0.42
ACGTcount: A:0.41, C:0.25, G:0.02, T:0.32
Consensus pattern (23 bp):
AATTATAATCAATTAAACCCCTG
Found at i:9401702 original size:3 final size:3
Alignment explanation
Indices: 9401694--9401746 Score: 88
Period size: 3 Copynumber: 17.7 Consensus size: 3
9401684 GCGAGTCCAT
* *
9401694 TTA TTA TTA TTT TTA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
9401742 TTA TT
1 TTA TT
9401747 TGCGAAAGGA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
3 46 1.00
ACGTcount: A:0.28, C:0.00, G:0.02, T:0.70
Consensus pattern (3 bp):
TTA
Found at i:9404078 original size:47 final size:47
Alignment explanation
Indices: 9404017--9404114 Score: 160
Period size: 47 Copynumber: 2.1 Consensus size: 47
9404007 GATTTTATTA
* * *
9404017 TTAGTAAATTTGTAATTTAGATGACTTATCATTCGTGAATTTATGAT
1 TTAGTAAATTTGTAATTTAAATGACTCATCATTCGCGAATTTATGAT
*
9404064 TTAGTAAATTTGTAATTTAAATGACTCATCATTTGCGAATTTATGAT
1 TTAGTAAATTTGTAATTTAAATGACTCATCATTCGCGAATTTATGAT
9404111 TTAG
1 TTAG
9404115 ATGAATTCTT
Statistics
Matches: 47, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.33, C:0.07, G:0.14, T:0.46
Consensus pattern (47 bp):
TTAGTAAATTTGTAATTTAAATGACTCATCATTCGCGAATTTATGAT
Found at i:9404159 original size:17 final size:17
Alignment explanation
Indices: 9404134--9404218 Score: 77
Period size: 17 Copynumber: 5.1 Consensus size: 17
9404124 TGATTTGACA
*
9404134 ATGACTTTATTATTAAG
1 ATGATTTTATTATTAAG
9404151 ATGATTTTATTATTAAG
1 ATGATTTTATTATTAAG
* * *
9404168 ATAATTTTATCATT-TG
1 ATGATTTTATTATTAAG
* * *
9404184 -TGA-TATAGTGATTTAG
1 ATGATTTTA-TTATTAAG
9404200 ATGATTTTATTATTAAG
1 ATGATTTTATTATTAAG
9404217 AT
1 AT
9404219 AGTTTTAAGT
Statistics
Matches: 53, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 3 0.06
15 6 0.11
16 2 0.04
17 39 0.74
18 3 0.06
ACGTcount: A:0.34, C:0.02, G:0.13, T:0.51
Consensus pattern (17 bp):
ATGATTTTATTATTAAG
Found at i:9404245 original size:39 final size:40
Alignment explanation
Indices: 9404191--9404293 Score: 120
Period size: 40 Copynumber: 2.6 Consensus size: 40
9404181 TTGTGATATA
* *
9404191 GTGATTTAGATGATTTTATTATTAAGATAGTTTTA-AGTG
1 GTGATTTAGGTGATTTTATTATTAAGATAATTTTATAGTG
* * * *
9404230 GTGATATAGGTGATTTTATTA-TAAGGTAATTTTATTATTT
1 GTGATTTAGGTGATTTTATTATTAAGATAATTTTA-TAGTG
*
9404270 GCGATTTAGGTGATTTTATTATTA
1 GTGATTTAGGTGATTTTATTATTA
9404294 GTGAATTTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
38 11 0.21
39 19 0.36
40 21 0.40
41 2 0.04
ACGTcount: A:0.29, C:0.01, G:0.19, T:0.50
Consensus pattern (40 bp):
GTGATTTAGGTGATTTTATTATTAAGATAATTTTATAGTG
Found at i:9404261 original size:16 final size:16
Alignment explanation
Indices: 9404237--9404267 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9404227 GTGGTGATAT
*
9404237 AGGTGATTTTATTATA
1 AGGTAATTTTATTATA
9404253 AGGTAATTTTATTAT
1 AGGTAATTTTATTAT
9404268 TTGCGATTTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.32, C:0.00, G:0.16, T:0.52
Consensus pattern (16 bp):
AGGTAATTTTATTATA
Found at i:9404294 original size:16 final size:16
Alignment explanation
Indices: 9404275--9404341 Score: 55
Period size: 17 Copynumber: 4.1 Consensus size: 16
9404265 TATTTGCGAT
9404275 TTAGGTGATTTTATTA
1 TTAGGTGATTTTATTA
* *
9404291 TTA-GTGAATTTATGA
1 TTAGGTGATTTTATTA
* ** *
9404306 TTTAGATTCTTTTACTA
1 -TTAGGTGATTTTATTA
9404323 TTAAGGTGATTTTATTA
1 TT-AGGTGATTTTATTA
9404340 TT
1 TT
9404342 CGTGATTTAG
Statistics
Matches: 36, Mismatches: 12, Indels: 5
0.68 0.23 0.09
Matches are distributed among these distances:
15 10 0.28
16 8 0.22
17 18 0.50
ACGTcount: A:0.27, C:0.03, G:0.15, T:0.55
Consensus pattern (16 bp):
TTAGGTGATTTTATTA
Found at i:9404376 original size:41 final size:41
Alignment explanation
Indices: 9404303--9404381 Score: 113
Period size: 41 Copynumber: 1.9 Consensus size: 41
9404293 AGTGAATTTA
* * *
9404303 TGATTTAGATTCTTTTACTATTAAGGTGATTTTATTATTCG
1 TGATTTAGATTATTTTACTATTAAGATAATTTTATTATTCG
* *
9404344 TGATTTAGATTATTTTATTATTAAGATAATTTTTTTAT
1 TGATTTAGATTATTTTACTATTAAGATAATTTTATTAT
9404382 GATTTAGAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
41 33 1.00
ACGTcount: A:0.28, C:0.04, G:0.11, T:0.57
Consensus pattern (41 bp):
TGATTTAGATTATTTTACTATTAAGATAATTTTATTATTCG
Found at i:9404638 original size:25 final size:25
Alignment explanation
Indices: 9404610--9404684 Score: 82
Period size: 25 Copynumber: 3.1 Consensus size: 25
9404600 ATATAATAAG
*
9404610 TTGTAAAATATTAATAATATTTTAT
1 TTGTAAAATATTAATAATATTTAAT
*** *
9404635 TTGTTTTATATTAA-AATA-ATAAT
1 TTGTAAAATATTAATAATATTTAAT
*
9404658 TTGTAAATTATTAATAATATTTAAT
1 TTGTAAAATATTAATAATATTTAAT
9404683 TT
1 TT
9404685 ATTTTATATT
Statistics
Matches: 38, Mismatches: 10, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
23 13 0.34
24 8 0.21
25 17 0.45
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.53
Consensus pattern (25 bp):
TTGTAAAATATTAATAATATTTAAT
Found at i:9404662 original size:48 final size:48
Alignment explanation
Indices: 9404592--9404705 Score: 169
Period size: 48 Copynumber: 2.4 Consensus size: 48
9404582 GATTTTAATA
* * *
9404592 TTAT-TTAAATATAATAAGTTGTAAAATATTAATAATATTTTATTTGTT
1 TTATATTAAA-ATAATAATTTGTAAAATATTAATAATATTTAATTTATT
*
9404640 TTATATTAAAATAATAATTTGTAAATTATTAATAATATTTAATTTATT
1 TTATATTAAAATAATAATTTGTAAAATATTAATAATATTTAATTTATT
9404688 TTATATTAAAAT-ATAATT
1 TTATATTAAAATAATAATT
9404706 AAATGATTAA
Statistics
Matches: 61, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
47 6 0.10
48 50 0.82
49 5 0.08
ACGTcount: A:0.45, C:0.00, G:0.04, T:0.52
Consensus pattern (48 bp):
TTATATTAAAATAATAATTTGTAAAATATTAATAATATTTAATTTATT
Found at i:9404694 original size:25 final size:23
Alignment explanation
Indices: 9404617--9404701 Score: 73
Period size: 25 Copynumber: 3.5 Consensus size: 23
9404607 AAGTTGTAAA
*
9404617 ATATTAATAATATTTTATTTGTTTT
1 ATATTAA-AATATTTAATTT-TTTT
* * **
9404642 ATATTAAAATA-ATAATTTGTAA
1 ATATTAAAATATTTAATTTTTTT
9404664 ATTATTAATAATATTTAATTTATTTT
1 A-TATTAA-AATATTTAATTT-TTTT
9404690 ATATTAAAATAT
1 ATATTAAAATAT
9404702 AATTAAATGA
Statistics
Matches: 47, Mismatches: 9, Indels: 9
0.72 0.14 0.14
Matches are distributed among these distances:
22 2 0.04
23 11 0.23
24 13 0.28
25 19 0.40
26 2 0.04
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (23 bp):
ATATTAAAATATTTAATTTTTTT
Found at i:9404982 original size:15 final size:16
Alignment explanation
Indices: 9404962--9404995 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
9404952 CTAATTTGAA
*
9404962 AATATAAAA-ATTTAT
1 AATATAAAATAATTAT
9404977 AATATAAAATAATTAT
1 AATATAAAATAATTAT
9404993 AAT
1 AAT
9404996 TTTGAGAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AATATAAAATAATTAT
Found at i:9408440 original size:1 final size:1
Alignment explanation
Indices: 9408434--9408458 Score: 50
Period size: 1 Copynumber: 25.0 Consensus size: 1
9408424 CACCTGATTT
9408434 AAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAA
9408459 GAATTATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 24 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:9409631 original size:16 final size:16
Alignment explanation
Indices: 9409612--9409642 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9409602 ATTAAAAAAA
9409612 TAATAGATTAAAATTT
1 TAATAGATTAAAATTT
*
9409628 TAATATATTAAAATT
1 TAATAGATTAAAATT
9409643 CACAAAATAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.52, C:0.00, G:0.03, T:0.45
Consensus pattern (16 bp):
TAATAGATTAAAATTT
Found at i:9409744 original size:14 final size:15
Alignment explanation
Indices: 9409727--9409756 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
9409717 TAGTGAAACT
9409727 TTAATCA-TTTAAAA
1 TTAATCATTTTAAAA
9409741 TTAATCATTTTAAAA
1 TTAATCATTTTAAAA
9409756 T
1 T
9409757 CATGCTAACA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.47
15 8 0.53
ACGTcount: A:0.47, C:0.07, G:0.00, T:0.47
Consensus pattern (15 bp):
TTAATCATTTTAAAA
Found at i:9410504 original size:12 final size:11
Alignment explanation
Indices: 9410483--9410606 Score: 59
Period size: 11 Copynumber: 11.2 Consensus size: 11
9410473 CATATTTAAC
9410483 ATTTATATTTT
1 ATTTATATTTT
9410494 ATTTCATATTTTTAT
1 ATTT-ATA--TTT-T
9410509 ATTTATCATTATT
1 ATTTAT-ATT-TT
*
9410522 A-TTAT-TATT
1 ATTTATATTTT
*
9410531 ATTTTTATCTTT
1 ATTTATAT-TTT
9410543 ATCTT-TATTTT
1 AT-TTATATTTT
9410554 ATTTAT-TTTAT
1 ATTTATATTT-T
*
9410565 CTTTATATTTT
1 ATTTATATTTT
9410576 A--TAT-TTTT
1 ATTTATATTTT
*
9410584 ATCTAT-TCTTT
1 ATTTATAT-TTT
9410595 ATTT-TATTTT
1 ATTTATATTTT
9410605 AT
1 AT
9410607 CTAGAAAATT
Statistics
Matches: 90, Mismatches: 6, Indels: 35
0.69 0.05 0.27
Matches are distributed among these distances:
8 5 0.06
9 6 0.07
10 19 0.21
11 25 0.28
12 17 0.19
13 6 0.07
14 6 0.07
15 6 0.07
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.70
Consensus pattern (11 bp):
ATTTATATTTT
Found at i:9410536 original size:30 final size:30
Alignment explanation
Indices: 9410500--9410601 Score: 99
Period size: 30 Copynumber: 3.5 Consensus size: 30
9410490 TTTTATTTCA
*
9410500 TATTTTTATATTTATCATTATTATTATTAT
1 TATTTTTATCTTTATCATTATTATTATTAT
*
9410530 TATTTTTATCTTTATCTTTATT-TTA-T-T
1 TATTTTTATCTTTATCATTATTATTATTAT
* *
9410557 TA-TTTTATCTTTAT-ATTTTATATTTTTAT
1 TATTTTTATCTTTATCATTAT-TATTATTAT
9410586 CTATTCTTTAT-TTTAT
1 -TATT-TTTATCTTTAT
9410602 TTTATCTAGA
Statistics
Matches: 60, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
25 3 0.05
26 13 0.22
27 5 0.08
28 2 0.03
29 4 0.07
30 22 0.37
31 6 0.10
32 5 0.08
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.71
Consensus pattern (30 bp):
TATTTTTATCTTTATCATTATTATTATTAT
Found at i:9410544 original size:21 final size:21
Alignment explanation
Indices: 9410484--9410608 Score: 62
Period size: 24 Copynumber: 5.6 Consensus size: 21
9410474 ATATTTAACA
*
9410484 TTTATATTTTAT-TTCA-TATT
1 TTTAT-TTTTATCTTTATTATT
*
9410504 TTTATATTTATCATTATTATTATT
1 TTTATTTTTATC--T-TTATTATT
*
9410528 ATTATTTTTATCTTTATCTTTATT
1 TTTATTTTTATCTTTA---TTATT
*
9410552 TTATTTATTTTATCTTTA-TATT
1 TT-TAT-TTTTATCTTTATTATT
*
9410574 TTATATTTTTATCTATTCTT-TAT
1 TT-TATTTTTATCT-TTATTAT-T
9410597 TTTA-TTTTATCT
1 TTTATTTTTATCT
9410609 AGAAAATTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 25
0.72 0.07 0.21
Matches are distributed among these distances:
19 5 0.06
20 5 0.06
21 19 0.23
22 16 0.19
23 6 0.07
24 20 0.24
25 2 0.02
26 11 0.13
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.70
Consensus pattern (21 bp):
TTTATTTTTATCTTTATTATT
Found at i:9410606 original size:47 final size:52
Alignment explanation
Indices: 9410486--9410606 Score: 148
Period size: 47 Copynumber: 2.4 Consensus size: 52
9410476 ATTTAACATT
9410486 TATAT-TTTATTTCATATTTTTATATTTATCATTATTATTATTATTATTTTTATC
1 TATATCTTTATTT--TA-TTTTATATTTATCATTATTATTATTATTATTTTTATC
* *
9410540 TTTATCTTTATTTTA-TTTAT-TTTATCTTTA-TATT-TTA-TATTTTTATC
1 TATATCTTTATTTTATTTTATATTTATCATTATTATTATTATTATTTTTATC
9410587 TAT-TCTTTATTTTATTTTAT
1 TATATCTTTATTTTATTTTAT
9410607 CTAGAAAATT
Statistics
Matches: 62, Mismatches: 3, Indels: 11
0.82 0.04 0.14
Matches are distributed among these distances:
46 11 0.18
47 17 0.27
48 3 0.05
49 4 0.06
50 9 0.15
51 5 0.08
53 2 0.03
54 4 0.06
55 7 0.11
ACGTcount: A:0.24, C:0.06, G:0.00, T:0.70
Consensus pattern (52 bp):
TATATCTTTATTTTATTTTATATTTATCATTATTATTATTATTATTTTTATC
Found at i:9410609 original size:21 final size:19
Alignment explanation
Indices: 9410526--9410608 Score: 85
Period size: 21 Copynumber: 4.0 Consensus size: 19
9410516 ATTATTATTA
9410526 TTATTATTTTTATCTTTATCT
1 TTATT-TTTTTAT-TTTATCT
9410547 TTATTTTATTTATTTTATCT
1 TTATTTT-TTTATTTTATCT
*
9410567 TTATATTTTATATTTTTATCT
1 TTAT-TTTTTTA-TTTTATCT
*
9410588 ATTCTTTATTTTATTTTATCT
1 -TTATTT-TTTTATTTTATCT
9410609 AGAAAATTTT
Statistics
Matches: 54, Mismatches: 3, Indels: 10
0.81 0.04 0.15
Matches are distributed among these distances:
20 16 0.30
21 31 0.57
22 7 0.13
ACGTcount: A:0.20, C:0.07, G:0.00, T:0.72
Consensus pattern (19 bp):
TTATTTTTTTATTTTATCT
Found at i:9411183 original size:75 final size:82
Alignment explanation
Indices: 9411078--9411294 Score: 304
Period size: 75 Copynumber: 2.7 Consensus size: 82
9411068 AGCAACACCC
*
9411078 AAAATCCATAATACCCGAAACCAGTAGACAATTAAAATACAAAAATCATAATCAACCCATAAAAT
1 AAAACCCATAATACCCGAAACCAGTAGACAATTAAAATACAAAAATCATAATCAACCCATAAAAT
9411143 CAATC-AACT-AA-A-T
66 CAATCAAACTAAATACT
* * *
9411156 AATACCCA-AA-ACCC-AAACCAGTAGACAATTAAAATATAAAAATCATAATCAACTCATAAAAT
1 AAAACCCATAATACCCGAAACCAGTAGACAATTAAAATACAAAAATCATAATCAACCCATAAAAT
9411218 CAATCAAACTAAGCAATACCT
66 CAATCAAACT-A--AATA-CT
9411239 AAAACCCATAATACCCGAAACCCAGTAGACAATTAAAATACAAAAATCATAATCAA
1 AAAACCCATAATACCCGAAA-CCAGTAGACAATTAAAATACAAAAATCATAATCAA
9411295 ATCGTGATTA
Statistics
Matches: 121, Mismatches: 6, Indels: 15
0.85 0.04 0.11
Matches are distributed among these distances:
75 51 0.42
76 8 0.07
77 2 0.02
78 6 0.05
80 2 0.02
81 1 0.01
83 8 0.07
84 2 0.02
85 4 0.03
86 3 0.02
87 34 0.28
ACGTcount: A:0.55, C:0.23, G:0.04, T:0.18
Consensus pattern (82 bp):
AAAACCCATAATACCCGAAACCAGTAGACAATTAAAATACAAAAATCATAATCAACCCATAAAAT
CAATCAAACTAAATACT
Found at i:9411361 original size:20 final size:20
Alignment explanation
Indices: 9411338--9411384 Score: 85
Period size: 20 Copynumber: 2.4 Consensus size: 20
9411328 CCCGAAACAC
*
9411338 AATCAAGATACAAAAATCAT
1 AATCAACATACAAAAATCAT
9411358 AATCAACATACAAAAATCAT
1 AATCAACATACAAAAATCAT
9411378 AATCAAC
1 AATCAAC
9411385 CCACAGAGAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.60, C:0.19, G:0.02, T:0.19
Consensus pattern (20 bp):
AATCAACATACAAAAATCAT
Found at i:9411537 original size:26 final size:26
Alignment explanation
Indices: 9411501--9411557 Score: 80
Period size: 26 Copynumber: 2.2 Consensus size: 26
9411491 AAAAAAGAAC
*
9411501 TCTGGCAGTAG-CTTTAAGTTCTCAGT
1 TCTGGCAGTAGAC-TTAAGGTCTCAGT
9411527 TCTGGCAGTAGACTTAAGGTCTCAGT
1 TCTGGCAGTAGACTTAAGGTCTCAGT
*
9411553 CCTGG
1 TCTGG
9411558 GTTTGGAGGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.19, C:0.21, G:0.26, T:0.33
Consensus pattern (26 bp):
TCTGGCAGTAGACTTAAGGTCTCAGT
Found at i:9413744 original size:47 final size:47
Alignment explanation
Indices: 9413693--9413783 Score: 148
Period size: 47 Copynumber: 1.9 Consensus size: 47
9413683 ATATGCCATT
* *
9413693 AATGTGAATACTTTTAGAAAGTTCAAAAGTCTAAAA-TCTTTATTATC
1 AATGTGAATACTCTTAGAAAGTTCAAAAGT-AAAAATTCTTTATTATC
9413740 AATGTGAATACTCTTAGAAAGTTCAAAAGTAAAAATTCTTTATT
1 AATGTGAATACTCTTAGAAAGTTCAAAAGTAAAAATTCTTTATT
9413784 GTATGAATTT
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
46 4 0.10
47 37 0.90
ACGTcount: A:0.42, C:0.10, G:0.11, T:0.37
Consensus pattern (47 bp):
AATGTGAATACTCTTAGAAAGTTCAAAAGTAAAAATTCTTTATTATC
Found at i:9413900 original size:6 final size:6
Alignment explanation
Indices: 9413889--9413920 Score: 55
Period size: 6 Copynumber: 5.3 Consensus size: 6
9413879 TAATACATAA
*
9413889 AAATAT AAATAT AAGTAT AAATAT AAATAT AA
1 AAATAT AAATAT AAATAT AAATAT AAATAT AA
9413921 TATTTTTTAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.66, C:0.00, G:0.03, T:0.31
Consensus pattern (6 bp):
AAATAT
Found at i:9413945 original size:86 final size:89
Alignment explanation
Indices: 9413843--9414012 Score: 210
Period size: 86 Copynumber: 1.9 Consensus size: 89
9413833 AGAGTGTTTA
*
9413843 ATTAAATTAAAATATTAAATAATAACTTTATT-AGCATAATACATA-A-AAATAT-AAATATAAG
1 ATTAAATTAAAATATTAAATAATAAATTTATTGA-CATAATACATATATAAATATGAAAT-TAA-
9413904 TATAAAT-AT-AAATATA-ATATTTTTT
63 -ATAAATAATAAAATATATATATTTTTT
** * *
9413929 ATTAAATTAATGTATTATATAATAAATTTATTGATATAATACATATATAAATATGAAATTAAATA
1 ATTAAATTAAAATATTAAATAATAAATTTATTGACATAATACATATATAAATATGAAATTAAATA
9413994 AATAATAAAATATATATAT
66 AATAATAAAATATATATAT
9414013 ATATATATAT
Statistics
Matches: 72, Mismatches: 5, Indels: 11
0.82 0.06 0.12
Matches are distributed among these distances:
86 44 0.61
87 4 0.06
88 16 0.22
89 8 0.11
ACGTcount: A:0.55, C:0.02, G:0.03, T:0.40
Consensus pattern (89 bp):
ATTAAATTAAAATATTAAATAATAAATTTATTGACATAATACATATATAAATATGAAATTAAATA
AATAATAAAATATATATATTTTTT
Found at i:9414010 original size:2 final size:2
Alignment explanation
Indices: 9414003--9414034 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
9413993 AAATAATAAA
9414003 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
9414035 GAGATGAGCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:9414595 original size:23 final size:23
Alignment explanation
Indices: 9414556--9414610 Score: 60
Period size: 22 Copynumber: 2.4 Consensus size: 23
9414546 TTCAAAATAT
* *
9414556 AAAAA-AAATTATTAAATAGAGAG
1 AAAAAGAAATTA-TAAATAAAAAG
9414579 AAAAAAGAAATTA-AAATAAAAAG
1 -AAAAAGAAATTATAAATAAAAAG
9414602 AAAAAGAAA
1 AAAAAGAAA
9414611 AGAAAAATGA
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
22 9 0.32
23 8 0.29
24 5 0.18
25 6 0.21
ACGTcount: A:0.75, C:0.00, G:0.11, T:0.15
Consensus pattern (23 bp):
AAAAAGAAATTATAAATAAAAAG
Found at i:9416948 original size:52 final size:51
Alignment explanation
Indices: 9416845--9417000 Score: 169
Period size: 52 Copynumber: 3.0 Consensus size: 51
9416835 TATAACCATA
*
9416845 CAAACTTATCC-ATTAAGAAT-CC-TTCTCCCTTAGAATTCTTCTTCTGTAAGT
1 CAAACTTA-CCTATTAAGAATCCCTTTC-CCCTTAGAATTCTTCTT-TGCAAGT
*
9416896 CAAACTTGCCTATTAAGAATCCCTTTCCCCTTA-AGATTCTTCTCTTGCAAGT
1 CAAACTTACCTATTAAGAATCCCTTTCCCCTTAGA-ATTCTTCT-TTGCAAGT
* **
9416948 CAAATTTACCTATTAAGAATCCTCTTT-CTTTTAGAATTCTTCTTTTGCAAGT
1 CAAACTTACCTATTAAGAATCC-CTTTCCCCTTAGAATTCTTC-TTTGCAAGT
9417000 C
1 C
9417001 TTCTTGTCCA
Statistics
Matches: 91, Mismatches: 6, Indels: 15
0.81 0.05 0.13
Matches are distributed among these distances:
50 2 0.02
51 17 0.19
52 62 0.68
53 10 0.11
ACGTcount: A:0.26, C:0.25, G:0.08, T:0.40
Consensus pattern (51 bp):
CAAACTTACCTATTAAGAATCCCTTTCCCCTTAGAATTCTTCTTTGCAAGT
Found at i:9417041 original size:11 final size:11
Alignment explanation
Indices: 9417025--9417055 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
9417015 GTAATATCTG
9417025 ACAAATCTCAA
1 ACAAATCTCAA
9417036 ACAAATCTCAA
1 ACAAATCTCAA
9417047 ACAAATCTC
1 ACAAATCTC
9417056 TTATGGGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.52, C:0.29, G:0.00, T:0.19
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:9418036 original size:52 final size:51
Alignment explanation
Indices: 9417931--9418086 Score: 161
Period size: 52 Copynumber: 3.0 Consensus size: 51
9417921 TATAACTATA
* * * * * *
9417931 CAAACTTGCCCATTAAGAATCCCTCTCCATTAGAATTCTTCTCCTGTAAGT
1 CAAACTTGCCTATTAAGAATCTCTTTCCTTTAGAATTCTTCTCTTGCAAGT
*
9417982 CAAGCTTGCCTATTAAGAATCTCTTTCCCTTTA-AGATTCTTCTCTTGCAAGT
1 CAAACTTGCCTATTAAGAATCTCTTT-CCTTTAGA-ATTCTTCTCTTGCAAGT
* * * * * *
9418034 CAAACTTACCTATTAATAATATTTTTTCTTTTAGAATTCTTCTTTTGCAAGT
1 CAAACTTGCCTATTAAGAAT-CTCTTTCCTTTAGAATTCTTCTCTTGCAAGT
9418086 C
1 C
9418087 TTCTTGTCCA
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
51 23 0.26
52 59 0.68
53 5 0.06
ACGTcount: A:0.26, C:0.24, G:0.09, T:0.41
Consensus pattern (51 bp):
CAAACTTGCCTATTAAGAATCTCTTTCCTTTAGAATTCTTCTCTTGCAAGT
Found at i:9419233 original size:11 final size:11
Alignment explanation
Indices: 9419217--9419247 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
9419207 GTAATATCTG
*
9419217 ACAAATTTCAA
1 ACAAATCTCAA
9419228 ACAAATCTCAA
1 ACAAATCTCAA
9419239 ACAAATCTC
1 ACAAATCTC
9419248 TTATGGGATT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.23
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:9420217 original size:52 final size:51
Alignment explanation
Indices: 9420123--9420246 Score: 167
Period size: 52 Copynumber: 2.4 Consensus size: 51
9420113 TATAACCATA
* * *
9420123 CAAACTTGCCCATTAAGAATCCCTCTCCCTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTACCTATTAAGAATCCCTCTCCCTTAGAATTCTTCTCCTGCAAGT
* * * * *
9420174 CAAGCTTACCTATTAAGAATCCCTTTTCCCTTAGGATTTTTCTCTTGCAAGT
1 CAAACTTACCTATTAAGAATCCC-TCTCCCTTAGAATTCTTCTCCTGCAAGT
9420226 CAAACTTACCTATTAAGAATC
1 CAAACTTACCTATTAAGAATC
9420247 TTCTTTCTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
51 20 0.32
52 43 0.68
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.35
Consensus pattern (51 bp):
CAAACTTACCTATTAAGAATCCCTCTCCCTTAGAATTCTTCTCCTGCAAGT
Found at i:9420274 original size:52 final size:52
Alignment explanation
Indices: 9420123--9420278 Score: 165
Period size: 52 Copynumber: 3.0 Consensus size: 52
9420113 TATAACCATA
* * * * * *
9420123 CAAACTTGCCCATTAAGAATCCC-TCTCCCTTAGAATTCTTCTCCTGTAAGT
1 CAAACTTACCTATTAAGAATCCCTTTTCCCTTAGAATTCTTTTCTTGCAAGT
* *
9420174 CAAGCTTACCTATTAAGAATCCCTTTTCCCTTAGGATT-TTTCTCTTGCAAGT
1 CAAACTTACCTATTAAGAATCCCTTTTCCCTTAGAATTCTTT-TCTTGCAAGT
* ** *
9420226 CAAACTTACCTATTAAGAAT-CTTCTTTCTTTTAGAATTCTTTTTTTGCAAGT
1 CAAACTTACCTATTAAGAATCCCT-TTTCCCTTAGAATTCTTTTCTTGCAAGT
9420278 C
1 C
9420279 TTTTTATCCA
Statistics
Matches: 87, Mismatches: 14, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
51 24 0.28
52 60 0.69
53 3 0.03
ACGTcount: A:0.25, C:0.25, G:0.10, T:0.40
Consensus pattern (52 bp):
CAAACTTACCTATTAAGAATCCCTTTTCCCTTAGAATTCTTTTCTTGCAAGT
Found at i:9420319 original size:11 final size:11
Alignment explanation
Indices: 9420303--9420344 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
9420293 GCAATATCTG
9420303 ACAAATCTCAA
1 ACAAATCTCAA
*
9420314 ACAAATCTCTA
1 ACAAATCTCAA
9420325 ACAAATCTCAA
1 ACAAATCTCAA
9420336 ACAAATCTC
1 ACAAATCTC
9420345 TTATGAGATT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.50, C:0.29, G:0.00, T:0.21
Consensus pattern (11 bp):
ACAAATCTCAA
Found at i:9420328 original size:22 final size:22
Alignment explanation
Indices: 9420303--9420345 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
9420293 GCAATATCTG
9420303 ACAAATCTCAAACAAATCTCTA
1 ACAAATCTCAAACAAATCTCTA
9420325 ACAAATCTCAAACAAATCTCT
1 ACAAATCTCAAACAAATCTCT
9420346 TATGAGATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.28, G:0.00, T:0.23
Consensus pattern (22 bp):
ACAAATCTCAAACAAATCTCTA
Found at i:9422385 original size:3 final size:3
Alignment explanation
Indices: 9422377--9422434 Score: 116
Period size: 3 Copynumber: 19.3 Consensus size: 3
9422367 TTTGGTTTTA
9422377 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
9422425 TAT TAT TAT T
1 TAT TAT TAT T
9422435 TTGTGTTAAG
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 55 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:9423335 original size:22 final size:23
Alignment explanation
Indices: 9423305--9423355 Score: 70
Period size: 22 Copynumber: 2.3 Consensus size: 23
9423295 ATATTTTATC
9423305 ATTAAAAAATAAT-TTTATCAAA
1 ATTAAAAAATAATGTTTATCAAA
* *
9423327 ATTATAAAATAATGTTTTTCAAA
1 ATTAAAAAATAATGTTTATCAAA
9423350 A-TAAAA
1 ATTAAAA
9423356 TAGTTTAATA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
22 16 0.64
23 9 0.36
ACGTcount: A:0.57, C:0.04, G:0.02, T:0.37
Consensus pattern (23 bp):
ATTAAAAAATAATGTTTATCAAA
Found at i:9423909 original size:15 final size:15
Alignment explanation
Indices: 9423889--9423924 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
9423879 CCAATCAAAT
9423889 TTTTTATTGATTTTA
1 TTTTTATTGATTTTA
*
9423904 TTTTTATTGCTTTTA
1 TTTTTATTGATTTTA
*
9423919 ATTTTA
1 TTTTTA
9423925 AAGATATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.19, C:0.03, G:0.06, T:0.72
Consensus pattern (15 bp):
TTTTTATTGATTTTA
Found at i:9424013 original size:3 final size:3
Alignment explanation
Indices: 9423993--9424033 Score: 64
Period size: 3 Copynumber: 13.3 Consensus size: 3
9423983 TTTTTATATA
*
9423993 ATT ATT TTT ATCT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT A
9424034 ATAAATCATT
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 32 0.91
4 3 0.09
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:9428343 original size:12 final size:12
Alignment explanation
Indices: 9428328--9428352 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9428318 TTTAATATAT
9428328 CCTTTTGTTGAG
1 CCTTTTGTTGAG
9428340 CCTTTTGTTGAG
1 CCTTTTGTTGAG
9428352 C
1 C
9428353 AATTTTTATG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.08, C:0.20, G:0.24, T:0.48
Consensus pattern (12 bp):
CCTTTTGTTGAG
Found at i:9435927 original size:43 final size:43
Alignment explanation
Indices: 9435868--9435951 Score: 150
Period size: 43 Copynumber: 2.0 Consensus size: 43
9435858 ACTACTTAAT
*
9435868 AAAATGAGATGGGGTTGTTTTAAGGTGGTGAACCAAGAAAATA
1 AAAATGAGATGAGGTTGTTTTAAGGTGGTGAACCAAGAAAATA
*
9435911 AAAATGAGGTGAGGTTGTTTTAAGGTGGTGAACCAAGAAAA
1 AAAATGAGATGAGGTTGTTTTAAGGTGGTGAACCAAGAAAA
9435952 GAAAGAAGAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.39, C:0.05, G:0.31, T:0.25
Consensus pattern (43 bp):
AAAATGAGATGAGGTTGTTTTAAGGTGGTGAACCAAGAAAATA
Found at i:9444781 original size:21 final size:22
Alignment explanation
Indices: 9444757--9444801 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 22
9444747 TAATGATACA
*
9444757 AAATTCACGGGA-CCAAGATAT
1 AAATTAACGGGAGCCAAGATAT
* *
9444778 AAATTAATGGGAGCCAAGTTAT
1 AAATTAACGGGAGCCAAGATAT
9444800 AA
1 AA
9444802 TTCTAAATTG
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.44, C:0.13, G:0.20, T:0.22
Consensus pattern (22 bp):
AAATTAACGGGAGCCAAGATAT
Found at i:9446139 original size:22 final size:23
Alignment explanation
Indices: 9446111--9446154 Score: 72
Period size: 22 Copynumber: 1.9 Consensus size: 23
9446101 TTTTTTCTTA
9446111 TTTTATTTAA-AAAAATTAATGC
1 TTTTATTTAACAAAAATTAATGC
9446133 TTTTATTTAAGCAAAAATTAAT
1 TTTTATTTAA-CAAAAATTAAT
9446155 ACTGTCAACT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 10 0.50
24 10 0.50
ACGTcount: A:0.45, C:0.05, G:0.05, T:0.45
Consensus pattern (23 bp):
TTTTATTTAACAAAAATTAATGC
Found at i:9446289 original size:58 final size:58
Alignment explanation
Indices: 9446214--9446411 Score: 236
Period size: 58 Copynumber: 3.4 Consensus size: 58
9446204 TTTTAAAATA
** *
9446214 ATACTTTCAACTTTTCCTTAAAATGCCATTGTTTATTATTTTTATTTAAAAAAAATTG
1 ATACTTTCAACTTTTCCTTAAAACACCATTATTTATTATTTTTATTTAAAAAAAATTG
* * * * *
9446272 ATACTTTTAATTTTTCCTTAAAACATCATTTTTTATTATTTTTATTTGAAAAAAATTG
1 ATACTTTCAACTTTTCCTTAAAACACCATTATTTATTATTTTTATTTAAAAAAAATTG
** * * * *
9446330 ATACTTTCAACTTTTATTTAAAACACCCTTATTTATGT-TTTTTATTCAACAAAATTTG
1 ATACTTTCAACTTTTCCTTAAAACACCATTATTTAT-TATTTTTATTTAAAAAAAATTG
* *
9446388 ATACTTTCAATTTTTTCTTAAAAC
1 ATACTTTCAACTTTTCCTTAAAAC
9446412 TTTCTTACTT
Statistics
Matches: 118, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
58 117 0.99
59 1 0.01
ACGTcount: A:0.34, C:0.13, G:0.04, T:0.50
Consensus pattern (58 bp):
ATACTTTCAACTTTTCCTTAAAACACCATTATTTATTATTTTTATTTAAAAAAAATTG
Found at i:9448251 original size:17 final size:16
Alignment explanation
Indices: 9448199--9448252 Score: 67
Period size: 15 Copynumber: 3.4 Consensus size: 16
9448189 GAATCACAAT
9448199 TTTG-AAATTCAAAGA
1 TTTGCAAATTCAAAGA
9448214 TTTGC-AATTCAAAGA
1 TTTGCAAATTCAAAGA
* *
9448229 TGTGCAAAGTTCAAATA
1 TTTGCAAA-TTCAAAGA
9448246 TTTGCAA
1 TTTGCAA
9448253 GAATGCAGAT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
15 18 0.55
16 2 0.06
17 13 0.39
ACGTcount: A:0.41, C:0.11, G:0.15, T:0.33
Consensus pattern (16 bp):
TTTGCAAATTCAAAGA
Found at i:9448290 original size:17 final size:17
Alignment explanation
Indices: 9448249--9448315 Score: 64
Period size: 17 Copynumber: 4.0 Consensus size: 17
9448239 TCAAATATTT
*
9448249 GCAAGAA-TGCAGATTC
1 GCAAGAATTGAAGATTC
* * *
9448265 ACAAAAATTGAAGATTT
1 GCAAGAATTGAAGATTC
* *
9448282 GGAAGAATTAAAGATTC
1 GCAAGAATTGAAGATTC
*
9448299 GCAAGAATTGGAGATTC
1 GCAAGAATTGAAGATTC
9448316 ATAAGAATTT
Statistics
Matches: 38, Mismatches: 12, Indels: 1
0.75 0.24 0.02
Matches are distributed among these distances:
16 5 0.13
17 33 0.87
ACGTcount: A:0.43, C:0.10, G:0.22, T:0.24
Consensus pattern (17 bp):
GCAAGAATTGAAGATTC
Found at i:9449002 original size:21 final size:23
Alignment explanation
Indices: 9448976--9449024 Score: 59
Period size: 21 Copynumber: 2.3 Consensus size: 23
9448966 GATTCACAAA
*
9448976 AAAATTTC-AAGATTCTCATTT-
1 AAAATTTCAAAAATTCTCATTTG
*
9448997 AAAA-TTCAAAAATTTTCATTTG
1 AAAATTTCAAAAATTCTCATTTG
9449019 AAAATT
1 AAAATT
9449025 CTTACAAATT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 3 0.13
21 15 0.65
22 4 0.17
23 1 0.04
ACGTcount: A:0.45, C:0.10, G:0.04, T:0.41
Consensus pattern (23 bp):
AAAATTTCAAAAATTCTCATTTG
Found at i:9450180 original size:8 final size:8
Alignment explanation
Indices: 9450169--9450248 Score: 63
Period size: 8 Copynumber: 9.8 Consensus size: 8
9450159 TCTTTTATTT
9450169 TTTTTTCA
1 TTTTTTCA
*
9450177 TTTTTTCT
1 TTTTTTCA
9450185 TTTTTTCA
1 TTTTTTCA
9450193 TTTTTTCA
1 TTTTTTCA
* **
9450201 CATTTCACA
1 -TTTTTTCA
9450210 TTTTTTTTCA
1 --TTTTTTCA
*
9450220 TTCTTTCA
1 TTTTTTCA
* *
9450228 TTTATTGA
1 TTTTTTCA
9450236 -TTTTTCA
1 TTTTTTCA
9450243 TTTTTT
1 TTTTTT
9450249 TTCACTCCAT
Statistics
Matches: 54, Mismatches: 15, Indels: 6
0.72 0.20 0.08
Matches are distributed among these distances:
7 5 0.09
8 39 0.72
9 5 0.09
10 5 0.09
ACGTcount: A:0.14, C:0.14, G:0.01, T:0.71
Consensus pattern (8 bp):
TTTTTTCA
Found at i:9450180 original size:16 final size:16
Alignment explanation
Indices: 9450156--9450199 Score: 65
Period size: 16 Copynumber: 2.8 Consensus size: 16
9450146 TGAGTTTTCC
9450156 TTTTC-TTTTATT-TTT
1 TTTTCATTTT-TTCTTT
9450171 TTTTCATTTTTTCTTT
1 TTTTCATTTTTTCTTT
9450187 TTTTCATTTTTTC
1 TTTTCATTTTTTC
9450200 ACATTTCACA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
15 7 0.26
16 20 0.74
ACGTcount: A:0.07, C:0.11, G:0.00, T:0.82
Consensus pattern (16 bp):
TTTTCATTTTTTCTTT
Found at i:9462768 original size:182 final size:182
Alignment explanation
Indices: 9462478--9462823 Score: 561
Period size: 182 Copynumber: 1.9 Consensus size: 182
9462468 CAGCGACAGA
* * *
9462478 TAGTACGGCCAAGGCTCTGGCAACTGACACGACTTCAGTTTCGGGCTCTATGAGTGGTAGAGTCC
1 TAGTACGGCCAAGGCTCTGGCAACTGACACGACTTCAGTTCCCGACTCTATGAGTGGTAGAGTCC
* *
9462543 TGACAATACTATCTGGTACTATGACAACAGCGTGAAGATCGATCAAACTTGACAAGATAATACCA
66 TGACAATACTATCTGGTACTATGACAACAGCATGAAAATCGATCAAACTTGACAAGATAATACCA
**
9462608 ACAATAAGCTTTTTATAGATCAGACATATAACCATTTCTAAACAGTGGCAGG
131 ACAATAAGCTTTCCATAGATCAGACATATAACCATTTCTAAACAGTGGCAGG
* *
9462660 TAGTACGGCCAAGGCTCTGGCAACTGACATGGCTTCAGTTCCCGACTCTCCA-G-GTGGTAGAGT
1 TAGTACGGCCAAGGCTCTGGCAACTGACACGACTTCAGTTCCCGACTCT--ATGAGTGGTAGAGT
*
9462723 CCTGACAATACTATCTGGTACTATGACAACAGCATGAAAATCGATCAAACTTGACAAGATAATTC
64 CCTGACAATACTATCTGGTACTATGACAACAGCATGAAAATCGATCAAACTTGACAAGATAATAC
*
9462788 CAACGATAAGCTTTCCATAGATCAGACATATAACCA
129 CAACAATAAGCTTTCCATAGATCAGACATATAACCA
9462824 AGGTATTCTA
Statistics
Matches: 151, Mismatches: 11, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
182 149 0.99
183 1 0.01
184 1 0.01
ACGTcount: A:0.33, C:0.23, G:0.20, T:0.25
Consensus pattern (182 bp):
TAGTACGGCCAAGGCTCTGGCAACTGACACGACTTCAGTTCCCGACTCTATGAGTGGTAGAGTCC
TGACAATACTATCTGGTACTATGACAACAGCATGAAAATCGATCAAACTTGACAAGATAATACCA
ACAATAAGCTTTCCATAGATCAGACATATAACCATTTCTAAACAGTGGCAGG
Found at i:9468912 original size:12 final size:12
Alignment explanation
Indices: 9468895--9468919 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
9468885 GAAGATTTAT
9468895 GGTAAAGGTTTG
1 GGTAAAGGTTTG
9468907 GGTAAAGGTTTG
1 GGTAAAGGTTTG
9468919 G
1 G
9468920 TGGAATCTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.00, G:0.44, T:0.32
Consensus pattern (12 bp):
GGTAAAGGTTTG
Found at i:9481700 original size:11 final size:11
Alignment explanation
Indices: 9481684--9481708 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
9481674 TCAGTACTTT
9481684 GAAGATTTCCA
1 GAAGATTTCCA
9481695 GAAGATTTCCA
1 GAAGATTTCCA
9481706 GAA
1 GAA
9481709 TGATGACACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (11 bp):
GAAGATTTCCA
Found at i:9485049 original size:16 final size:17
Alignment explanation
Indices: 9485030--9485067 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
9485020 ATTTTACGTG
*
9485030 ACAATAA-GTTTAGATC
1 ACAATAATGATTAGATC
*
9485046 ACAAAAATGATTAGATC
1 ACAATAATGATTAGATC
9485063 ACAAT
1 ACAAT
9485068 CTTAAAGAGT
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
16 6 0.33
17 12 0.67
ACGTcount: A:0.50, C:0.13, G:0.11, T:0.26
Consensus pattern (17 bp):
ACAATAATGATTAGATC
Found at i:9485240 original size:14 final size:16
Alignment explanation
Indices: 9485208--9485238 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
9485198 AGTTAGAATT
9485208 ATTTTATATATTAAAA
1 ATTTTATATATTAAAA
*
9485224 ATTTTATATTTTAAA
1 ATTTTATATATTAAA
9485239 TTAATATTCA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (16 bp):
ATTTTATATATTAAAA
Found at i:9492014 original size:24 final size:24
Alignment explanation
Indices: 9491960--9492118 Score: 97
Period size: 24 Copynumber: 6.4 Consensus size: 24
9491950 TTTTTTTTAA
* *
9491960 TTTTTAATTATTTATTTAT-TATT
1 TTTTTTATTATTTATTAATATATT
** *
9491983 ACTATTATTATTTATTAATATATT
1 TTTTTTATTATTTATTAATATATT
* *
9492007 TTTTTTATTATTTATCTATTAACATAT
1 TTTTTTATTATTTAT-TAAT-ATAT-T
* * *
9492034 TTTATTATTTATCTATTAATATATA
1 TTTTTTA-TTATTTATTAATATATT
* *
9492059 TATTTTATTATTTATCTATTCATA-T
1 TTTTTTATTATTTAT-TAAT-ATATT
* * *
9492084 ATTATTATTTATCTATTAATATATAT
1 TTTTTTA-TTATTTATTAATATAT-T
9492110 TTTTTTATT
1 TTTTTTATT
9492119 TTATCTTTTC
Statistics
Matches: 99, Mismatches: 27, Indels: 18
0.69 0.19 0.12
Matches are distributed among these distances:
23 14 0.14
24 26 0.26
25 20 0.20
26 22 0.22
27 10 0.10
28 7 0.07
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (24 bp):
TTTTTTATTATTTATTAATATATT
Found at i:9492033 original size:28 final size:26
Alignment explanation
Indices: 9491985--9492124 Score: 143
Period size: 28 Copynumber: 5.5 Consensus size: 26
9491975 TTATTATTAC
*
9491985 TATTA-TTATTTATTAATATATTTTTTT
1 TATTATTTATCTATTAATATA--TTTTT
*
9492012 TATTATTTATCTATTAACATA--TTT
1 TATTATTTATCTATTAATATATTTTT
9492036 TATTATTTATCTATTAATATATATATTT
1 TATTATTTATCTATTAATATAT-T-TTT
*
9492064 TATTATTTATCTATTCATATA----T
1 TATTATTTATCTATTAATATATTTTT
9492086 TATTATTTATCTATTAATATATATTTT
1 TATTATTTATCTATTAATATAT-TTTT
9492113 T-TTATTTTATCT
1 TATTA-TTTATCT
9492125 TTTCGGTTGA
Statistics
Matches: 97, Mismatches: 5, Indels: 22
0.78 0.04 0.18
Matches are distributed among these distances:
22 21 0.22
24 23 0.24
26 3 0.03
27 14 0.14
28 36 0.37
ACGTcount: A:0.31, C:0.05, G:0.00, T:0.64
Consensus pattern (26 bp):
TATTATTTATCTATTAATATATTTTT
Found at i:9492057 original size:52 final size:50
Alignment explanation
Indices: 9491960--9492118 Score: 207
Period size: 52 Copynumber: 3.2 Consensus size: 50
9491950 TTTTTTTTAA
* * * *
9491960 TTTTTAATTATTTATTTATT-AT-TACTATTA-TTATTTATTAATATATT
1 TTTTTTATTATTTATCTATTCATATATTATTATTTATCTATTAATATATT
* *
9492007 TTTTTTATTATTTATCTATTAACATATTTTATTATTTATCTATTAATATATA
1 TTTTTTATTATTTATCTATT--CATATATTATTATTTATCTATTAATATATT
*
9492059 TATTTTATTATTTATCTATTCATATATTATTATTTATCTATTAATATATAT
1 TTTTTTATTATTTATCTATTCATATATTATTATTTATCTATTAATATAT-T
9492110 TTTTTTATT
1 TTTTTTATT
9492119 TTATCTTTTC
Statistics
Matches: 96, Mismatches: 10, Indels: 8
0.84 0.09 0.07
Matches are distributed among these distances:
47 18 0.19
50 30 0.31
51 14 0.15
52 34 0.35
ACGTcount: A:0.31, C:0.04, G:0.00, T:0.64
Consensus pattern (50 bp):
TTTTTTATTATTTATCTATTCATATATTATTATTTATCTATTAATATATT
Found at i:9492088 original size:22 final size:22
Alignment explanation
Indices: 9492058--9492107 Score: 82
Period size: 22 Copynumber: 2.3 Consensus size: 22
9492048 ATTAATATAT
* *
9492058 ATATTTTATTATTTATCTATTC
1 ATATATTATTATTTATCTATTA
9492080 ATATATTATTATTTATCTATTA
1 ATATATTATTATTTATCTATTA
9492102 ATATAT
1 ATATAT
9492108 ATTTTTTTAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.34, C:0.06, G:0.00, T:0.60
Consensus pattern (22 bp):
ATATATTATTATTTATCTATTA
Found at i:9492951 original size:8 final size:7
Alignment explanation
Indices: 9492938--9492994 Score: 59
Period size: 6 Copynumber: 8.3 Consensus size: 7
9492928 TTAAGGTTAT
9492938 TTATTTA
1 TTATTTA
9492945 CTTATTTA
1 -TTATTTA
9492953 TTA-TTA
1 TTATTTA
9492959 TT-TTTA
1 TTATTTA
9492965 TTA-TTA
1 TTATTTA
9492971 TTATCATTA
1 TTAT--TTA
9492980 TTA-TTA
1 TTATTTA
9492986 TTATTTA
1 TTATTTA
9492993 TT
1 TT
9492995 GATTAGATTA
Statistics
Matches: 43, Mismatches: 0, Indels: 13
0.77 0.00 0.23
Matches are distributed among these distances:
6 22 0.51
7 8 0.19
8 7 0.16
9 6 0.14
ACGTcount: A:0.28, C:0.04, G:0.00, T:0.68
Consensus pattern (7 bp):
TTATTTA
Found at i:9492958 original size:3 final size:3
Alignment explanation
Indices: 9492950--9492990 Score: 64
Period size: 3 Copynumber: 13.7 Consensus size: 3
9492940 ATTTACTTAT
* *
9492950 TTA TTA TTA TTT TTA TTA TTA TTA TCA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
9492991 TATTGATTAG
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.29, C:0.02, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:9493227 original size:14 final size:14
Alignment explanation
Indices: 9493208--9493262 Score: 56
Period size: 15 Copynumber: 3.8 Consensus size: 14
9493198 TAAAGCTAAA
9493208 TCATTTTTTTTTCT
1 TCATTTTTTTTTCT
*
9493222 TCATTTTTTTTCTTT
1 TCATTTTTTTT-TCT
* *
9493237 TCCTTTTTGTTTCT
1 TCATTTTTTTTTCT
*
9493251 TGAATTTTTTTT
1 T-CATTTTTTTT
9493263 AATATTAAAT
Statistics
Matches: 32, Mismatches: 7, Indels: 3
0.76 0.17 0.07
Matches are distributed among these distances:
14 14 0.44
15 18 0.56
ACGTcount: A:0.07, C:0.13, G:0.04, T:0.76
Consensus pattern (14 bp):
TCATTTTTTTTTCT
Found at i:9504783 original size:41 final size:41
Alignment explanation
Indices: 9504642--9504925 Score: 313
Period size: 41 Copynumber: 6.8 Consensus size: 41
9504632 GAACGTTTAC
* * **
9504642 TTTCAAAGTTG-TGATGCCTTTGATTAGAGGAGCTTTGTTTATT
1 TTTCAAAGTCGTTGA-GCCTCTGATTAGAGGAGC--CATTTATT
* *
9504685 TTTAAAAGTCGTTGAGCTTCTGATTAGAGGAGCCATTTA-T
1 TTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATT
* * *
9504725 TTTCAAAGTCGTTGAGCCTCTGATTAGATGAGCAATTTACT
1 TTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATT
* * ** *
9504766 TTCCAAAGTCGTTGAGCCTCCGATTAGATAAGTCATTTATT
1 TTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATT
9504807 TTTCAAAGTCGTTGAGCCT-TCGATTAGAGGAGCCATTTATT
1 TTTCAAAGTCGTTGAGCCTCT-GATTAGAGGAGCCATTTATT
* **
9504848 TTTCAAAGTCGTTGAGCCTCTGATTAGATGAGCTTTGTTTATGT
1 TTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGC--CATTTAT-T
*
9504892 TTCTCAAAGTCGTTGAGCCTCTGCTTAGAGGAGC
1 TT-TCAAAGTCGTTGAGCCTCTGATTAGAGGAGC
9504926 TTTGATCAAA
Statistics
Matches: 207, Mismatches: 26, Indels: 14
0.84 0.11 0.06
Matches are distributed among these distances:
40 36 0.17
41 105 0.51
42 1 0.00
43 30 0.14
44 6 0.03
45 29 0.14
ACGTcount: A:0.24, C:0.16, G:0.22, T:0.38
Consensus pattern (41 bp):
TTTCAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATT
Found at i:9505177 original size:19 final size:19
Alignment explanation
Indices: 9505131--9505178 Score: 62
Period size: 19 Copynumber: 2.5 Consensus size: 19
9505121 TTTATTTTTA
9505131 TTTTTTTATTTATTAATAC
1 TTTTTTTATTTATTAATAC
* *
9505150 TGTTATTATTTATTAATA-
1 TTTTTTTATTTATTAATAC
9505168 TATTTTTTATT
1 T-TTTTTTATT
9505179 ATTTATCTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
18 1 0.04
19 23 0.96
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (19 bp):
TTTTTTTATTTATTAATAC
Found at i:9505189 original size:8 final size:8
Alignment explanation
Indices: 9505173--9505268 Score: 51
Period size: 8 Copynumber: 12.2 Consensus size: 8
9505163 TAATATATTT
9505173 TTTAT-TA
1 TTTATCTA
9505180 TTTATCTA
1 TTTATCTA
*
9505188 -TTAACATA
1 TTTATC-TA
9505196 TTTTAT-TA
1 -TTTATCTA
9505204 TTTATCTA
1 TTTATCTA
* *
9505212 TTAATATA
1 TTTATCTA
* *
9505220 TATATTTA
1 TTTATCTA
9505228 -TTATCATTA
1 TTTATC--TA
9505237 TTTATCTA
1 TTTATCTA
* *
9505245 TTAATATA
1 TTTATCTA
9505253 -TTAT-TA
1 TTTATCTA
9505259 TTTATCTA
1 TTTATCTA
9505267 TT
1 TT
9505269 AATATATTTT
Statistics
Matches: 67, Mismatches: 12, Indels: 19
0.68 0.12 0.19
Matches are distributed among these distances:
6 2 0.03
7 24 0.36
8 31 0.46
9 2 0.03
10 8 0.12
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.60
Consensus pattern (8 bp):
TTTATCTA
Found at i:9505204 original size:24 final size:24
Alignment explanation
Indices: 9505172--9505220 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
9505162 TTAATATATT
9505172 TTTTATTATTTATCTATTAACATA
1 TTTTATTATTTATCTATTAACATA
*
9505196 TTTTATTATTTATCTATTAATATA
1 TTTTATTATTTATCTATTAACATA
9505220 T
1 T
9505221 ATATTTATTA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.06, G:0.00, T:0.61
Consensus pattern (24 bp):
TTTTATTATTTATCTATTAACATA
Found at i:9505261 original size:22 final size:22
Alignment explanation
Indices: 9505233--9505285 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
9505223 ATTTATTATC
9505233 ATTATTTATCTATTAATATATT
1 ATTATTTATCTATTAATATATT
9505255 ATTATTTATCTATTAATATATT
1 ATTATTTATCTATTAATATATT
* *
9505277 TTTTTTTAT
1 ATTATTTAT
9505286 TTTTATCTTT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.32, C:0.04, G:0.00, T:0.64
Consensus pattern (22 bp):
ATTATTTATCTATTAATATATT
Found at i:9505273 original size:55 final size:54
Alignment explanation
Indices: 9505165--9505293 Score: 185
Period size: 55 Copynumber: 2.4 Consensus size: 54
9505155 TTATTTATTA
*
9505165 ATATATTTTTTATTATTTATCTATTAACATATTTTATTATTTATCTATTAATAT
1 ATATATTTTTTATTATTTATCTATTAACATATATTATTATTTATCTATTAATAT
9505219 ATATATTTATTATCATTATTTATCTATT-A-ATATATTATTATTTATCTATTAATAT
1 ATATATTT-TT-T-ATTATTTATCTATTAACATATATTATTATTTATCTATTAATAT
*
9505274 AT-TTTTTTTTATT-TTTATCT
1 ATATATTTTTTATTATTTATCT
9505294 TTTCGGCTAA
Statistics
Matches: 70, Mismatches: 2, Indels: 10
0.85 0.02 0.12
Matches are distributed among these distances:
50 7 0.10
51 3 0.04
52 1 0.01
53 2 0.03
54 12 0.17
55 29 0.41
56 2 0.03
57 14 0.20
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.63
Consensus pattern (54 bp):
ATATATTTTTTATTATTTATCTATTAACATATATTATTATTTATCTATTAATAT
Found at i:9505980 original size:16 final size:15
Alignment explanation
Indices: 9505955--9505985 Score: 53
Period size: 16 Copynumber: 2.0 Consensus size: 15
9505945 ATTTTGCCAA
9505955 GATCTGACCCGATCT
1 GATCTGACCCGATCT
9505970 GATCATGACCCGATCT
1 GATC-TGACCCGATCT
9505986 AGCGACCTAC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.27
16 11 0.73
ACGTcount: A:0.23, C:0.32, G:0.19, T:0.26
Consensus pattern (15 bp):
GATCTGACCCGATCT
Found at i:9506121 original size:18 final size:18
Alignment explanation
Indices: 9506095--9506190 Score: 56
Period size: 18 Copynumber: 5.2 Consensus size: 18
9506085 CTGCGTTAAG
*
9506095 ATTTTTTTATTTTATTTT
1 ATTTATTTATTTTATTTT
*
9506113 ATTTATTTA-TTTATTAT
1 ATTTATTTATTTTATTTT
* * *
9506130 ATTAGAATTA-TTTAGTATT
1 ATT-TATTTATTTTA-TTTT
*
9506149 CTTTACTTTATTTTATTTT
1 ATTTA-TTTATTTTATTTT
9506168 -TATT-TTTATCTTTATTTTT
1 AT-TTATTTAT-TTTA-TTTT
9506187 ATTT
1 ATTT
9506191 TCTTTAAATA
Statistics
Matches: 60, Mismatches: 10, Indels: 15
0.71 0.12 0.18
Matches are distributed among these distances:
17 15 0.25
18 22 0.37
19 18 0.30
20 5 0.08
ACGTcount: A:0.23, C:0.03, G:0.02, T:0.72
Consensus pattern (18 bp):
ATTTATTTATTTTATTTT
Found at i:9506170 original size:6 final size:6
Alignment explanation
Indices: 9506155--9506191 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
9506145 TATTCTTTAC
*
9506155 TTTA-T TTTATT TTTATT TTTATC TTTATT TTTATT TT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TT
9506192 CTTTAAATAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 4 0.14
6 25 0.86
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTATT
Found at i:9506180 original size:23 final size:24
Alignment explanation
Indices: 9506145--9506191 Score: 71
Period size: 23 Copynumber: 2.0 Consensus size: 24
9506135 AATTATTTAG
9506145 TATTCTTTACTTTA-TTTTATTTT
1 TATTCTTTACTTTATTTTTATTTT
9506168 TATT-TTTATCTTTATTTTTATTTT
1 TATTCTTTA-CTTTATTTTTATTTT
9506192 CTTTAAATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
22 4 0.18
23 9 0.41
24 9 0.41
ACGTcount: A:0.17, C:0.06, G:0.00, T:0.77
Consensus pattern (24 bp):
TATTCTTTACTTTATTTTTATTTT
Found at i:9506191 original size:18 final size:17
Alignment explanation
Indices: 9506155--9506191 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 17
9506145 TATTCTTTAC
9506155 TTTATTTTATTTTTATT
1 TTTATTTTATTTTTATT
9506172 TTTATCTTTATTTTTATT
1 TTTAT-TTTATTTTTATT
9506190 TT
1 TT
9506192 CTTTAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
17 5 0.26
18 14 0.74
ACGTcount: A:0.16, C:0.03, G:0.00, T:0.81
Consensus pattern (17 bp):
TTTATTTTATTTTTATT
Found at i:9506280 original size:58 final size:58
Alignment explanation
Indices: 9506210--9506430 Score: 347
Period size: 58 Copynumber: 3.8 Consensus size: 58
9506200 AAAATTCCAA
* *
9506210 AAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAG-TTTTCT
9506269 -AAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
*
9506326 AAAAAATATTTTTTGAGGAAAAGTTGAAAGCATCAATTTTTCTTGAAAATAA-TTTTCT
1 AAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
*
9506384 AAAAAAAGGTTTTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
1 -AAAAAA--TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTG
9506431 TACAAAAGCA
Statistics
Matches: 152, Mismatches: 5, Indels: 9
0.92 0.03 0.05
Matches are distributed among these distances:
57 6 0.04
58 62 0.41
59 48 0.32
60 35 0.23
61 1 0.01
ACGTcount: A:0.41, C:0.06, G:0.14, T:0.39
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTTCT
Found at i:9508098 original size:22 final size:22
Alignment explanation
Indices: 9508070--9508113 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
9508060 CTAAATCTTC
*
9508070 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
9508092 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
9508114 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:9511786 original size:25 final size:24
Alignment explanation
Indices: 9511750--9511826 Score: 75
Period size: 25 Copynumber: 3.2 Consensus size: 24
9511740 TATCTTTCTT
*
9511750 TAAAAGGGTTCGACAATCAAGGCC
1 TAAAAGGATTCGACAATCAAGGCC
* *
9511774 TAAACAGGATTCGGCAATGAAGGCC
1 TAAA-AGGATTCGACAATCAAGGCC
* * * *
9511799 TAAAA-AAGTCAACAATGAAGGCC
1 TAAAAGGATTCGACAATCAAGGCC
9511822 TAAAA
1 TAAAA
9511827 AAGTAAGCAA
Statistics
Matches: 45, Mismatches: 7, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
23 19 0.42
24 5 0.11
25 21 0.47
ACGTcount: A:0.44, C:0.18, G:0.22, T:0.16
Consensus pattern (24 bp):
TAAAAGGATTCGACAATCAAGGCC
Found at i:9511849 original size:23 final size:24
Alignment explanation
Indices: 9511787--9511843 Score: 100
Period size: 23 Copynumber: 2.5 Consensus size: 24
9511777 ACAGGATTCG
9511787 GCAATGAAGGCCTAAAAAAGTCAA
1 GCAATGAAGGCCTAAAAAAGTCAA
9511811 -CAATGAAGGCCTAAAAAAGT-AA
1 GCAATGAAGGCCTAAAAAAGTCAA
9511833 GCAATGAAGGC
1 GCAATGAAGGC
9511844 TGAAAATTTT
Statistics
Matches: 32, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
22 2 0.06
23 30 0.94
ACGTcount: A:0.49, C:0.16, G:0.23, T:0.12
Consensus pattern (24 bp):
GCAATGAAGGCCTAAAAAAGTCAA
Found at i:9512020 original size:22 final size:22
Alignment explanation
Indices: 9511992--9512035 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
9511982 CTAAATCTTC
9511992 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
9512014 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
9512036 TAAATATACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.45, C:0.14, G:0.09, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:9539152 original size:18 final size:21
Alignment explanation
Indices: 9539115--9539200 Score: 90
Period size: 21 Copynumber: 4.2 Consensus size: 21
9539105 ACGATATTAA
9539115 AAAATTAATTATTATAATAAT
1 AAAATTAATTATTATAATAAT
*
9539136 AAAATTAATTATTATAATTAT
1 AAAATTAATTATTATAATAAT
* *
9539157 AAGATTTAA-TATTGTAATAAT
1 AA-AATTAATTATTATAATAAT
* *
9539178 AAGATTAA--AAT-TAATAAT
1 AAAATTAATTATTATAATAAT
9539196 AAAAT
1 AAAAT
9539201 ATATATTTAG
Statistics
Matches: 56, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
18 11 0.20
19 2 0.04
20 4 0.07
21 34 0.61
22 5 0.09
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (21 bp):
AAAATTAATTATTATAATAAT
Found at i:9542596 original size:13 final size:13
Alignment explanation
Indices: 9542580--9542605 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
9542570 AAATGTCATG
9542580 ATAAAATAAAAAA
1 ATAAAATAAAAAA
9542593 ATAAAATAAAAAA
1 ATAAAATAAAAAA
9542606 TTCTTGATTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.85, C:0.00, G:0.00, T:0.15
Consensus pattern (13 bp):
ATAAAATAAAAAA
Found at i:9546852 original size:15 final size:17
Alignment explanation
Indices: 9546832--9546869 Score: 55
Period size: 15 Copynumber: 2.4 Consensus size: 17
9546822 ACCTTTTTTA
9546832 TTATTTTATT-AT-ATT
1 TTATTTTATTGATAATT
9546847 TTATTTTATTGATAATT
1 TTATTTTATTGATAATT
9546864 TT-TTTT
1 TTATTTT
9546870 CTCTCTTAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
15 10 0.48
16 6 0.29
17 5 0.24
ACGTcount: A:0.24, C:0.00, G:0.03, T:0.74
Consensus pattern (17 bp):
TTATTTTATTGATAATT
Found at i:9547353 original size:16 final size:16
Alignment explanation
Indices: 9547309--9547360 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
9547299 TTTTTTTCTA
9547309 TTTACTTTTTAAATA-T
1 TTTA-TTTTTAAATATT
* *
9547325 TTAATTTAATAAATATT
1 TTTATTT-TTAAATATT
*
9547342 TTTATTTTTAAATCTT
1 TTTATTTTTAAATATT
9547358 TTT
1 TTT
9547361 TAGGGTCCAT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
15 3 0.10
16 19 0.66
17 7 0.24
ACGTcount: A:0.33, C:0.04, G:0.00, T:0.63
Consensus pattern (16 bp):
TTTATTTTTAAATATT
Found at i:9547987 original size:19 final size:16
Alignment explanation
Indices: 9547972--9548017 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 16
9547962 TATAAATATA
9547972 TATTATATTAATAAATT
1 TATTAT-TTAATAAATT
*
9547989 TATTATTTAAT-AACT
1 TATTATTTAATAAATT
9548004 TA--ATTTAATAAATT
1 TATTATTTAATAAATT
9548018 AATATGGCTT
Statistics
Matches: 26, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
13 7 0.27
14 3 0.12
15 5 0.19
16 5 0.19
17 6 0.23
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (16 bp):
TATTATTTAATAAATT
Found at i:9550289 original size:26 final size:26
Alignment explanation
Indices: 9550260--9550349 Score: 62
Period size: 26 Copynumber: 3.4 Consensus size: 26
9550250 CTTTGTATGG
9550260 GGCATTTGCATCATGAAAAAGAAATT
1 GGCATTTGCATCATGAAAAAGAAATT
**
9550286 GGCATGTTTG--TCATTG-GTAAGAAATTT
1 GGCA--TTTGCATCA-TGAAAAAGAAA-TT
* * *
9550313 TGCATTTGCATTAT-AGAAAAGGAATT
1 GGCATTTGCATCATGA-AAAAGAAATT
9550339 GGCATTTGCAT
1 GGCATTTGCAT
9550350 TGTTGATAAG
Statistics
Matches: 48, Mismatches: 8, Indels: 16
0.67 0.11 0.22
Matches are distributed among these distances:
25 4 0.08
26 26 0.54
27 14 0.29
28 4 0.08
ACGTcount: A:0.33, C:0.10, G:0.22, T:0.34
Consensus pattern (26 bp):
GGCATTTGCATCATGAAAAAGAAATT
Found at i:9550341 original size:53 final size:52
Alignment explanation
Indices: 9550261--9550373 Score: 133
Period size: 53 Copynumber: 2.1 Consensus size: 52
9550251 TTTGTATGGG
9550261 GCATTTGCATCATGAAAAAGAAATTGGCATGTTTGTCATTG-G-TAAGAAATTTT
1 GCATTTGCATCATGAAAAAGAAATTGGCA--TTTG-CATTGTGATAAGAAATTTT
* * *
9550314 GCATTTGCATTAT-AGAAAAGGAATTGGCATTTGCATTGTTGATAAGAATTTTT
1 GCATTTGCATCATGA-AAAAGAAATTGGCATTTGCATTG-TGATAAGAAATTTT
9550367 GCATTTG
1 GCATTTG
9550374 TATAGATCAT
Statistics
Matches: 53, Mismatches: 3, Indels: 8
0.83 0.05 0.12
Matches are distributed among these distances:
50 5 0.09
51 4 0.08
52 2 0.04
53 42 0.79
ACGTcount: A:0.32, C:0.09, G:0.21, T:0.38
Consensus pattern (52 bp):
GCATTTGCATCATGAAAAAGAAATTGGCATTTGCATTGTGATAAGAAATTTT
Found at i:9550409 original size:20 final size:20
Alignment explanation
Indices: 9550384--9550431 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
9550374 TATAGATCAT
*
9550384 TTGCATTTGCATAAAAGTTG
1 TTGCATTTGCATAAAAATTG
*
9550404 TTGCATTTGCCTAAAAATTG
1 TTGCATTTGCATAAAAATTG
*
9550424 TTACATTT
1 TTGCATTT
9550432 TCACAATCGT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 25 1.00
ACGTcount: A:0.29, C:0.12, G:0.15, T:0.44
Consensus pattern (20 bp):
TTGCATTTGCATAAAAATTG
Found at i:9551284 original size:15 final size:17
Alignment explanation
Indices: 9551259--9551290 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
9551249 AAAACCTCTA
9551259 TTTATGATGAG-TTTTT
1 TTTATGATGAGATTTTT
9551275 TTTA-GATGAGATTTTT
1 TTTATGATGAGATTTTT
9551291 AAAATTTCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.22, C:0.00, G:0.19, T:0.59
Consensus pattern (17 bp):
TTTATGATGAGATTTTT
Found at i:9551387 original size:19 final size:19
Alignment explanation
Indices: 9551335--9551387 Score: 63
Period size: 19 Copynumber: 2.8 Consensus size: 19
9551325 TTCAAAAACG
* *
9551335 AAAAAAAATAAAAACCTAT
1 AAAAAAAAGAAAAAACTAT
*
9551354 AAAAAAAAGACAAAACT-T
1 AAAAAAAAGAAAAAACTAT
9551372 AAAAAAAGAGAAAAAA
1 AAAAAAA-AGAAAAAA
9551388 TCCAAAAACA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 8 0.28
19 21 0.72
ACGTcount: A:0.77, C:0.08, G:0.06, T:0.09
Consensus pattern (19 bp):
AAAAAAAAGAAAAAACTAT
Found at i:9552634 original size:19 final size:17
Alignment explanation
Indices: 9552593--9552639 Score: 53
Period size: 17 Copynumber: 2.8 Consensus size: 17
9552583 CTTTATCTAT
9552593 TAATTATTGTTAATTTC
1 TAATTATTGTTAATTTC
*
9552610 -AATTATCTTTTAATTTAC
1 TAATTAT-TGTTAATTT-C
9552628 TAATTATT-TTAA
1 TAATTATTGTTAA
9552640 AAAAAATAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
16 6 0.23
17 12 0.46
18 2 0.08
19 6 0.23
ACGTcount: A:0.34, C:0.06, G:0.02, T:0.57
Consensus pattern (17 bp):
TAATTATTGTTAATTTC
Found at i:9555572 original size:25 final size:25
Alignment explanation
Indices: 9555544--9555593 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
9555534 ATGTTTGGAA
9555544 TAATATTCAATACAAAAAGTTTTTC
1 TAATATTCAATACAAAAAGTTTTTC
9555569 TAATATTCAATACAAAAAGTTTTTC
1 TAATATTCAATACAAAAAGTTTTTC
9555594 ACTTACTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.44, C:0.12, G:0.04, T:0.40
Consensus pattern (25 bp):
TAATATTCAATACAAAAAGTTTTTC
Found at i:9560102 original size:48 final size:49
Alignment explanation
Indices: 9560016--9560114 Score: 121
Period size: 48 Copynumber: 2.0 Consensus size: 49
9560006 ATAAAAAACA
*
9560016 AAAAAAAAAGAATTTCTAAATGACCTAAATGGTG-AAAAATTTAAAAAT
1 AAAAAAAAAGAATTTCTAAATGACCCAAATGGTGAAAAAATTTAAAAAT
* * * * *
9560064 AAAAAAGAA-AATTTGTAAATAGGCCCAAATTGTGAAAAAATTTAGAAAT
1 AAAAAAAAAGAATTTCTAAAT-GACCCAAATGGTGAAAAAATTTAAAAAT
9560113 AA
1 AA
9560115 CACTTGTAAA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
47 10 0.23
48 18 0.42
49 15 0.35
ACGTcount: A:0.58, C:0.06, G:0.12, T:0.24
Consensus pattern (49 bp):
AAAAAAAAAGAATTTCTAAATGACCCAAATGGTGAAAAAATTTAAAAAT
Found at i:9566293 original size:21 final size:21
Alignment explanation
Indices: 9566265--9566317 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
9566255 TCAATAATGG
9566265 ATGAAAAAAATG-AGAAAGCAAA
1 ATGAAAAAAATGAAGAAA--AAA
9566287 ATGAAAAAAATGAAGAAAAAA
1 ATGAAAAAAATGAAGAAAAAA
9566308 ATGAAAAAAA
1 ATGAAAAAAA
9566318 AAGTGAAAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
21 13 0.43
22 12 0.40
23 5 0.17
ACGTcount: A:0.74, C:0.02, G:0.15, T:0.09
Consensus pattern (21 bp):
ATGAAAAAAATGAAGAAAAAA
Found at i:9566305 original size:11 final size:10
Alignment explanation
Indices: 9566268--9566329 Score: 54
Period size: 11 Copynumber: 5.6 Consensus size: 10
9566258 ATAATGGATG
9566268 AAAAAAATGA
1 AAAAAAATGA
9566278 GAAAGCAAAATG-
1 -AAA--AAAATGA
9566290 AAAAAAATGAA
1 AAAAAAATG-A
9566301 GAAAAAAATGAA
1 -AAAAAAATG-A
9566313 AAAAAAAGTGA
1 AAAAAAA-TGA
9566324 AAAAAA
1 AAAAAA
9566330 TGTGAAAGCA
Statistics
Matches: 45, Mismatches: 0, Indels: 12
0.79 0.00 0.21
Matches are distributed among these distances:
9 6 0.13
11 20 0.44
12 13 0.29
13 6 0.13
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.08
Consensus pattern (10 bp):
AAAAAAATGA
Found at i:9566306 original size:12 final size:11
Alignment explanation
Indices: 9566268--9566329 Score: 65
Period size: 12 Copynumber: 5.5 Consensus size: 11
9566258 ATAATGGATG
9566268 AAAAAAATGAGA
1 AAAAAAATGA-A
*
9566280 AAGCAAAATG--
1 AA-AAAAATGAA
9566290 AAAAAAATGAA
1 AAAAAAATGAA
9566301 GAAAAAAATGAA
1 -AAAAAAATGAA
9566313 AAAAAAAGTGAA
1 AAAAAAA-TGAA
9566325 AAAAA
1 AAAAA
9566330 TGTGAAAGCA
Statistics
Matches: 43, Mismatches: 2, Indels: 10
0.78 0.04 0.18
Matches are distributed among these distances:
9 6 0.14
10 2 0.05
11 7 0.16
12 22 0.51
13 6 0.14
ACGTcount: A:0.76, C:0.02, G:0.15, T:0.08
Consensus pattern (11 bp):
AAAAAAATGAA
Found at i:9566306 original size:33 final size:33
Alignment explanation
Indices: 9566267--9566331 Score: 96
Period size: 33 Copynumber: 1.9 Consensus size: 33
9566257 AATAATGGAT
*
9566267 GAAAAAAATGAGAAAGCAAAA-TGAAAAAAATGAA
1 GAAAAAAATGA-AAA-AAAAAGTGAAAAAAATGAA
9566301 GAAAAAAATGAAAAAAAAAGTGAAAAAAATG
1 GAAAAAAATGAAAAAAAAAGTGAAAAAAATG
9566332 TGAAAGCAGA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
32 4 0.14
33 14 0.48
34 11 0.38
ACGTcount: A:0.72, C:0.02, G:0.17, T:0.09
Consensus pattern (33 bp):
GAAAAAAATGAAAAAAAAAGTGAAAAAAATGAA
Found at i:9566325 original size:21 final size:20
Alignment explanation
Indices: 9566265--9566331 Score: 66
Period size: 21 Copynumber: 3.1 Consensus size: 20
9566255 TCAATAATGG
9566265 ATGAAAAAAATG-AGAAAGCAAA
1 ATGAAAAAAA-GAAGAAA--AAA
9566287 ATGAAAAAAATGAAGAAAAAA
1 ATGAAAAAAA-GAAGAAAAAA
9566308 ATGAAAAAAA-AAGTGAAAAAA
1 ATGAAAAAAAGAA--GAAAAAA
9566329 ATG
1 ATG
9566332 TGAAAGCAGA
Statistics
Matches: 42, Mismatches: 0, Indels: 7
0.86 0.00 0.14
Matches are distributed among these distances:
19 2 0.05
21 23 0.55
22 12 0.29
23 5 0.12
ACGTcount: A:0.72, C:0.01, G:0.16, T:0.10
Consensus pattern (20 bp):
ATGAAAAAAAGAAGAAAAAA
Found at i:9567809 original size:44 final size:43
Alignment explanation
Indices: 9567663--9568110 Score: 324
Period size: 43 Copynumber: 10.3 Consensus size: 43
9567653 GTCTAGGAGC
* ** * * * * *
9567663 TTTATTTTTTAAAGTTGTTGAGTCTCTGTTGAAAGGAACCTTA
1 TTTATTTTTCAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTA
* * * * *
9567706 TTTATTTTTTTTAAAGTCATTGAGCCTCTATTTAGATGAGCTTTA
1 TTTA--TTTTTCAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTA
** ** *
9567751 TTTGCTTTTCTAAAGTTGTTGAGCCTTTGCTTAGAGGAGCCTTA
1 TTTATTTTTC-AAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTA
* * * * * *
9567795 TTTATTTTTTTAAAGTAATTGAGCTTTTGTTTAAAAGA-CGTTTA
1 TTTA-TTTTTCAAAGTCATTGAGCCTTTGTTTAGAGGAGC-CTTA
* * * **
9567839 TTTACTTTTTCAAAGTCATTCAACCTCTGTTTAGAAAAGCCTTA
1 TTTA-TTTTTCAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTA
* *
9567883 TTTATTTTTCAAAGTCATTGAGCCTATATTTAGAGGAGCCTTA
1 TTTATTTTTCAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTA
* * **
9567926 TATATTTTTCAAAGTCACTGAGCCTTTGTTTAGAAAAGCCTTA
1 TTTATTTTTCAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTA
* * **
9567969 TTTATTTTTCAAGGTCATTGAGCTTTTACTTAGAGGAGCCTTA
1 TTTATTTTTCAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTA
* * * * * * * **
9568012 TTTATTTTTTAAAGTCGTTTAGCCTCTGCTTAAAGCAGTTTTA
1 TTTATTTTTCAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTA
* ** * * *
9568055 TTTATTTTTCAAAATTGTTGAG-TTTCTGATTAGAGGAGCTTTA
1 TTTATTTTTCAAAGTCATTGAGCCTT-TGTTTAGAGGAGCCTTA
*
9568098 TTTATTTCTCAAA
1 TTTATTTTTCAAA
9568111 AGTTGTGGAA
Statistics
Matches: 317, Mismatches: 81, Indels: 14
0.77 0.20 0.03
Matches are distributed among these distances:
42 1 0.00
43 189 0.60
44 89 0.28
45 38 0.12
ACGTcount: A:0.26, C:0.13, G:0.15, T:0.46
Consensus pattern (43 bp):
TTTATTTTTCAAAGTCATTGAGCCTTTGTTTAGAGGAGCCTTA
Found at i:9568391 original size:24 final size:24
Alignment explanation
Indices: 9568342--9568393 Score: 61
Period size: 24 Copynumber: 2.2 Consensus size: 24
9568332 AAATAGATGG
**
9568342 TTGAGTTTGATTAAAGTTGTTTGT
1 TTGAGTTTGATTAAAGTTGTAGGT
*
9568366 TTGAGTTTGAGTTAAATTTG-AGGT
1 TTGAGTTTGA-TTAAAGTTGTAGGT
9568390 TTGA
1 TTGA
9568394 AGTTGAAGTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
24 16 0.67
25 8 0.33
ACGTcount: A:0.23, C:0.00, G:0.27, T:0.50
Consensus pattern (24 bp):
TTGAGTTTGATTAAAGTTGTAGGT
Found at i:9569835 original size:48 final size:49
Alignment explanation
Indices: 9569773--9569868 Score: 122
Period size: 48 Copynumber: 2.0 Consensus size: 49
9569763 TTCTTTCCAA
* * *
9569773 AAAAATAAGAATTTCTAAATAGACCCAAATGGTGAAAAATTTACAAATC
1 AAAAAGAAGAATTTCTAAATAGACCCAAATAGTAAAAAATTTACAAATC
* * * *
9569822 AAAAAGAA-AATTTCTAAATTGGCGCAAATAGTAAAAAATTTAGAAAT
1 AAAAAGAAGAATTTCTAAATAGACCCAAATAGTAAAAAATTTACAAAT
9569869 AACACTTGTA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
48 33 0.82
49 7 0.17
ACGTcount: A:0.54, C:0.09, G:0.11, T:0.25
Consensus pattern (49 bp):
AAAAAGAAGAATTTCTAAATAGACCCAAATAGTAAAAAATTTACAAATC
Found at i:9570536 original size:9 final size:8
Alignment explanation
Indices: 9570509--9570547 Score: 51
Period size: 8 Copynumber: 4.9 Consensus size: 8
9570499 AAATAATAAT
*
9570509 AAAAAATA
1 AAAAAAGA
**
9570517 AAAAGGGA
1 AAAAAAGA
9570525 AAAAAAGA
1 AAAAAAGA
9570533 AAAAAAGA
1 AAAAAAGA
9570541 AAAAAAG
1 AAAAAAG
9570548 GTGGTTGAAT
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (8 bp):
AAAAAAGA
Found at i:9571956 original size:45 final size:45
Alignment explanation
Indices: 9571906--9571999 Score: 125
Period size: 45 Copynumber: 2.1 Consensus size: 45
9571896 TTTCAAAGAA
* * *
9571906 AAAAAAAAATTTTAAATAGACCCAAATGGTGAAAAATTTTGAAAT
1 AAAAAAAAATTCTAAATAGACCCAAATGATGAAAAATTTAGAAAT
* * * *
9571951 AAAAAAAAATTCTAAATTGGCCTAAATGATGGAAAATTTAGAAAT
1 AAAAAAAAATTCTAAATAGACCCAAATGATGAAAAATTTAGAAAT
9571996 AAAA
1 AAAA
9572000 CTTGTAAAAT
Statistics
Matches: 42, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.56, C:0.06, G:0.12, T:0.26
Consensus pattern (45 bp):
AAAAAAAAATTCTAAATAGACCCAAATGATGAAAAATTTAGAAAT
Found at i:9580404 original size:7 final size:7
Alignment explanation
Indices: 9580387--9580460 Score: 59
Period size: 8 Copynumber: 10.7 Consensus size: 7
9580377 AAAATGAGAA
9580387 AAAAATAG
1 AAAAAT-G
9580395 AAAAATG
1 AAAAATG
9580402 AAAAAAT-
1 -AAAAATG
9580409 AAGAAATG
1 AA-AAATG
9580417 AAAAA-G
1 AAAAATG
9580423 AAAAA--
1 AAAAATG
9580428 AAAAAT-
1 AAAAATG
*
9580434 AAAAATA
1 AAAAATG
*
9580441 AAAAATAA
1 AAAAAT-G
9580449 AAAAATG
1 AAAAATG
9580456 AAAAA
1 AAAAA
9580461 AATGTAAAAG
Statistics
Matches: 59, Mismatches: 1, Indels: 13
0.81 0.01 0.18
Matches are distributed among these distances:
5 5 0.08
6 14 0.24
7 19 0.32
8 21 0.36
ACGTcount: A:0.81, C:0.00, G:0.08, T:0.11
Consensus pattern (7 bp):
AAAAATG
Found at i:9580428 original size:39 final size:41
Alignment explanation
Indices: 9580376--9580460 Score: 113
Period size: 39 Copynumber: 2.1 Consensus size: 41
9580366 AATGGATGAA
* *
9580376 AAAAATGAGAAAAAAATAGAAAAATGAAAAAAT-AAGAAATG
1 AAAAATGAGAAAAAAAAAGAAAAAT-AAAAAATAAAAAAATG
*
9580417 AAAAA-GA-AAAAAAAAATAAAAATAAAAAATAAAAAAATG
1 AAAAATGAGAAAAAAAAAGAAAAATAAAAAATAAAAAAATG
9580456 AAAAA
1 AAAAA
9580461 AATGTAAAAG
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
38 7 0.17
39 26 0.65
40 2 0.05
41 5 0.12
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (41 bp):
AAAAATGAGAAAAAAAAAGAAAAATAAAAAATAAAAAAATG
Found at i:9580439 original size:24 final size:24
Alignment explanation
Indices: 9580402--9580471 Score: 79
Period size: 24 Copynumber: 2.9 Consensus size: 24
9580392 TAGAAAAATG
9580402 AAAAAATAAGAAATGAAAAAGAAAA
1 AAAAAATAA-AAATGAAAAAGAAAA
* *
9580427 AAAAAATAAAAATAAAAAATAAAA
1 AAAAAATAAAAATGAAAAAGAAAA
* *
9580451 AAATGAA-AAAAATGTAAAAGA
1 AAA-AAATAAAAATGAAAAAGA
9580472 GGAGAAAAAG
Statistics
Matches: 38, Mismatches: 6, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
24 27 0.71
25 11 0.29
ACGTcount: A:0.80, C:0.00, G:0.09, T:0.11
Consensus pattern (24 bp):
AAAAAATAAAAATGAAAAAGAAAA
Found at i:9580445 original size:25 final size:25
Alignment explanation
Indices: 9580374--9580453 Score: 83
Period size: 24 Copynumber: 3.2 Consensus size: 25
9580364 ATAATGGATG
* *
9580374 AAAAAAATGAGAAA-AAAATAGAAAA
1 AAAAAAATAAGAAATAAAAAAG-AAA
*
9580399 ATGAAAAAATAAGAAATGAAAAAGAAA
1 A--AAAAAATAAGAAATAAAAAAGAAA
*
9580426 AAAAAAATAA-AAATAAAAAATAAA
1 AAAAAAATAAGAAATAAAAAAGAAA
9580450 AAAA
1 AAAA
9580454 TGAAAAAAAT
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
24 16 0.34
25 10 0.21
27 16 0.34
28 5 0.11
ACGTcount: A:0.81, C:0.00, G:0.09, T:0.10
Consensus pattern (25 bp):
AAAAAAATAAGAAATAAAAAAGAAA
Found at i:9580450 original size:6 final size:6
Alignment explanation
Indices: 9580403--9580451 Score: 55
Period size: 6 Copynumber: 7.8 Consensus size: 6
9580393 AGAAAAATGA
*
9580403 AAAAAT AAGAAAT GAAAAAG AAAAA- AAAAAT AAAAAT AAAAAAT AAAAA
1 AAAAAT AA-AAAT -AAAAAT AAAAAT AAAAAT AAAAAT -AAAAAT AAAAA
9580452 AATGAAAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
5 5 0.13
6 18 0.47
7 13 0.34
8 2 0.05
ACGTcount: A:0.84, C:0.00, G:0.06, T:0.10
Consensus pattern (6 bp):
AAAAAT
Found at i:9581204 original size:79 final size:79
Alignment explanation
Indices: 9581073--9581374 Score: 390
Period size: 79 Copynumber: 3.8 Consensus size: 79
9581063 ATAACTTGTA
* * *
9581073 AGTTGTGGTCAAATAATGAAAATAATATGGATCAGTGGATAAAATTTGTTCTAAAATTGCTAGTG
1 AGTTGTGATCAAATGATGAAAATAATGTGGATCAGTGGATAAAATTTGTTCTAAAATTGCTAGTG
*
9581138 CTGAGAAGCCTATG
66 CTGAGAAGCTTATG
* * * *
9581152 AGTTGTGATCAAATGAT-AGAAATAATGTGGATTAGTGGATGAAATTTATTCTAAAATTGCTAAT
1 AGTTGTGATCAAATGATGA-AAATAATGTGGATCAGTGGATAAAATTTGTTCTAAAATTGCTAGT
* *
9581216 GGTGAGAAGCTTGTG
65 GCTGAGAAGCTTATG
* * *
9581231 AGTTGTGATCAAATGATGAAAATAATGTGGATCAATGGATAAAATTTGTTCTGAAATTACTAGTG
1 AGTTGTGATCAAATGATGAAAATAATGTGGATCAGTGGATAAAATTTGTTCTAAAATTGCTAGTG
9581296 CTGAGAAGCTTATG
66 CTGAGAAGCTTATG
* * * * * * * * *
9581310 AGTTGTGATCAAGTGATAAAAATAATGTGGATCGGTTGATAGAATTTATTTTGAAATGGCTAGTG
1 AGTTGTGATCAAATGATGAAAATAATGTGGATCAGTGGATAAAATTTGTTCTAAAATTGCTAGTG
9581375 TTAAGGTGCT
Statistics
Matches: 192, Mismatches: 29, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
78 1 0.01
79 190 0.99
80 1 0.01
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.33
Consensus pattern (79 bp):
AGTTGTGATCAAATGATGAAAATAATGTGGATCAGTGGATAAAATTTGTTCTAAAATTGCTAGTG
CTGAGAAGCTTATG
Found at i:9581356 original size:158 final size:158
Alignment explanation
Indices: 9581067--9581359 Score: 453
Period size: 158 Copynumber: 1.9 Consensus size: 158
9581057 GCCGATATAA
* * *
9581067 CTTGTAAGTTGTGGTCAAATAATGAAAATAATATGGATCAGTGGATAAAATTTGTTCTAAAATTG
1 CTTGTAAGTTGTGATCAAATAATGAAAATAATATGGATCAATGGATAAAATTTGTTCTAAAATTA
* *
9581132 CTAGTGCTGAGAAGCCTATGAGTTGTGATCAAATGATAGAAATAATGTGGATTAGTGGATGAAAT
66 CTAGTGCTGAGAAGCCTATGAGTTGTGATCAAATGATAAAAATAATGTGGATCAGTGGATGAAAT
9581197 TTATTCTAAAATTGCTAATGGTGAGAAG
131 TTATTCTAAAATTGCTAATGGTGAGAAG
* * * *
9581225 CTTGTGAGTTGTGATCAAATGATGAAAATAATGTGGATCAATGGATAAAATTTGTTCTGAAATTA
1 CTTGTAAGTTGTGATCAAATAATGAAAATAATATGGATCAATGGATAAAATTTGTTCTAAAATTA
* * * *
9581290 CTAGTGCTGAGAAGCTTATGAGTTGTGATCAAGTGATAAAAATAATGTGGATCGGTTGAT-AGAA
66 CTAGTGCTGAGAAGCCTATGAGTTGTGATCAAATGATAAAAATAATGTGGATCAGTGGATGA-AA
9581354 TTTATT
130 TTTATT
9581360 TTGAAATGGC
Statistics
Matches: 121, Mismatches: 13, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
157 1 0.01
158 120 0.99
ACGTcount: A:0.36, C:0.07, G:0.24, T:0.34
Consensus pattern (158 bp):
CTTGTAAGTTGTGATCAAATAATGAAAATAATATGGATCAATGGATAAAATTTGTTCTAAAATTA
CTAGTGCTGAGAAGCCTATGAGTTGTGATCAAATGATAAAAATAATGTGGATCAGTGGATGAAAT
TTATTCTAAAATTGCTAATGGTGAGAAG
Found at i:9581749 original size:33 final size:33
Alignment explanation
Indices: 9581707--9581777 Score: 99
Period size: 33 Copynumber: 2.2 Consensus size: 33
9581697 ACTTGACATT
* * *
9581707 TGCATAGCATGCATTGCATTTCTA-AATGTTTAG
1 TGCATAGCATACATTGCATTT-GAGAATGTCTAG
9581740 TGCATAGCATACATTGCATTTGAGAATGTCTAG
1 TGCATAGCATACATTGCATTTGAGAATGTCTAG
9581773 TGCAT
1 TGCAT
9581778 GAATCTAGGA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
32 1 0.03
33 33 0.97
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.37
Consensus pattern (33 bp):
TGCATAGCATACATTGCATTTGAGAATGTCTAG
Found at i:9582127 original size:43 final size:43
Alignment explanation
Indices: 9582062--9582818 Score: 436
Period size: 43 Copynumber: 18.0 Consensus size: 43
9582052 GATTGTCGAT
* *
9582062 GAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTTTGCTTAGAG
1 GAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
9582105 GAGCTTTATTT-TTTTTCAAA-------AG--T-TG-TTAGAG
1 GAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
* * * *
9582136 GAGCTTTATTTTTTTTTTAAAGTTGTTGAGCCTATGTTTAGAT
1 GAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
* ** * **
9582179 GAG-TCTTATTTATTTTTCAAAATCATTGAGCTTCTACTTAGAG
1 GAGCT-TTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
* ** * * *
9582222 GTGCTTTATTTATTTTTCAAAGTCATTGAGCCTCTATTTAAAT
1 GAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
* * *
9582265 GAGCTTTTTTTATTTTTCAAAGTTGTTGAGCCTCTATTTAAAG
1 GAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
* * * * * *
9582308 GAG-TCTCATTTATTTTTCAAAGTTATTAAGCCTTTGCTTATAG
1 GAGCT-TTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
* * ***
9582351 GAGTTTTATTTATTTTTCAAAAGTTGTTAAAGGAGC--TTT----
1 GAGCTTTATTTATTTTTC-AAAGTTGTT-GAGCCTCTGTTTAGAG
9582390 -A--TTTATTTATTTTTCAAA---GTT-A---T-TG-TTAGATG
1 GAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGA-G
* * *
9582422 G-GCTTTATTTATTTATTTTTTTAAAGTTGTTAAGCCTCTGTTTAGAA
1 GAGC----TTTATTTA-TTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
* * *
9582469 GAGCTTCATTTATTTTTCAAAGTTGTTAAGCCTCTGCTTAGAG
1 GAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
* * * * * *
9582512 AAGCTTTATTTATTTTTTAAAGTTGTTAAACCTGTATTTAGAG
1 GAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
* * ** * * *
9582555 GAGATTTATTTGTTTTTCAAAGTCATTGAGCCTTTGTTTAAAT
1 GAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
* *
9582598 GAGCTTTATTTATTTTTTTCAAAGTTGTTGAGCCTCTGCTTAGAA
1 GAGCTTTATTTA--TTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
* * * * *
9582643 GAGCTTTATTTATTTATTTTTTAAA-TTGTTGAGCTTTTATTTAGGG
1 GAGC----TTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
* * ** *
9582689 GAGCCTTATTTACTTTTCAAAGTCATTGAGCCTGTGTTTA-AGG
1 GAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGA-G
* * * *
9582732 GAGCTTTTTTTTTTTTTTCAAAAGTCG-TGAGCCTCTATTT-GAAG
1 GAGC-TTTATTTATTTTTC-AAAGTTGTTGAGCCTCTGTTTAG-AG
* * *
9582776 GAGGTTTATTTATTTCTCAAAAGTTGTAGAGCCTCTGTTTAGA
1 GAGCTTTATTTATTTTTC-AAAGTTGTTGAGCCTCTGTTTAGA
9582819 AGAATTTTTA
Statistics
Matches: 555, Mismatches: 102, Indels: 113
0.72 0.13 0.15
Matches are distributed among these distances:
27 2 0.00
30 1 0.00
31 17 0.03
32 13 0.02
33 1 0.00
35 5 0.01
36 14 0.03
38 9 0.02
39 10 0.02
41 1 0.00
42 30 0.05
43 312 0.56
44 54 0.10
45 40 0.07
46 20 0.04
47 11 0.02
48 7 0.01
49 8 0.01
ACGTcount: A:0.24, C:0.11, G:0.17, T:0.48
Consensus pattern (43 bp):
GAGCTTTATTTATTTTTCAAAGTTGTTGAGCCTCTGTTTAGAG
Done.