Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 51 of 195
Found at i:10632553 original size:32 final size:32
Alignment explanation
Indices: 10632513--10632579 Score: 84
Period size: 33 Copynumber: 2.1 Consensus size: 32
10632503 TAACAATTCT
*
10632513 AAAAAATTCT-AAATT-TTTTTTAAAAGTTTGA
1 AAAAAATTCTAAAATTATTTTTCAAAA-TTTGA
*
10632544 AAAAGAATTCTAAAATTATTTTTCAAAATTTTA
1 AAAA-AATTCTAAAATTATTTTTCAAAATTTGA
10632577 AAA
1 AAA
10632580 TTTATAAATA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
31 4 0.13
32 6 0.19
33 12 0.39
34 9 0.29
ACGTcount: A:0.49, C:0.04, G:0.04, T:0.42
Consensus pattern (32 bp):
AAAAAATTCTAAAATTATTTTTCAAAATTTGA
Found at i:10632683 original size:19 final size:18
Alignment explanation
Indices: 10632659--10632702 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
10632649 TTCAAAATTG
*
10632659 TTTAAAATTTCACAAAAAA
1 TTTAAAAATTC-CAAAAAA
*
10632678 TTTAAAAATTCTAAAAAA
1 TTTAAAAATTCCAAAAAA
*
10632696 TTCAAAA
1 TTTAAAA
10632703 CAACTCTAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.59, C:0.09, G:0.00, T:0.32
Consensus pattern (18 bp):
TTTAAAAATTCCAAAAAA
Found at i:10632851 original size:19 final size:20
Alignment explanation
Indices: 10632823--10632861 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
10632813 TATCATCATT
10632823 TGAAAA-TTTTTAAAAATTC
1 TGAAAATTTTTTAAAAATTC
*
10632842 TGAAAGTTTTTTAAAAATTC
1 TGAAAATTTTTTAAAAATTC
10632862 AACAATTAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 5 0.28
20 13 0.72
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.44
Consensus pattern (20 bp):
TGAAAATTTTTTAAAAATTC
Found at i:10633163 original size:28 final size:28
Alignment explanation
Indices: 10633132--10633186 Score: 67
Period size: 28 Copynumber: 2.0 Consensus size: 28
10633122 TTTCAAAATT
*
10633132 TTTTCTAAA-ACTTTTAAATTTAATTTAG
1 TTTTCTAAATA-TTTTAAAATTAATTTAG
* *
10633160 TTTTTTAAATATTTTAAAATTATTTTA
1 TTTTCTAAATATTTTAAAATTAATTTA
10633187 CTTGTTATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
28 22 0.96
29 1 0.04
ACGTcount: A:0.36, C:0.04, G:0.02, T:0.58
Consensus pattern (28 bp):
TTTTCTAAATATTTTAAAATTAATTTAG
Found at i:10633348 original size:18 final size:19
Alignment explanation
Indices: 10633306--10633348 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
10633296 ATTCTTCTAA
*
10633306 AATTTTTGGATTTTTTTTT
1 AATTTTTGGATATTTTTTT
10633325 AA-TTTTGGA-ATTTTTTT
1 AATTTTTGGATATTTTTTT
10633342 AATTTTT
1 AATTTTT
10633349 CATGTTTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
17 9 0.41
18 11 0.50
19 2 0.09
ACGTcount: A:0.21, C:0.00, G:0.09, T:0.70
Consensus pattern (19 bp):
AATTTTTGGATATTTTTTT
Found at i:10633509 original size:39 final size:39
Alignment explanation
Indices: 10633466--10633551 Score: 95
Period size: 39 Copynumber: 2.2 Consensus size: 39
10633456 TACATTTAAA
*
10633466 AAAAATTTCAT-A-CTTTTTTTAGAATTGTTTATAATTTTT
1 AAAAATTTCATAAGC-TTTTTTA-AATTGTTTATAAGTTTT
** * *
10633505 AAAAATTTTTTAAGCTTTTTTATATTTTTTATAAGTTTT
1 AAAAATTTCATAAGCTTTTTTAAATTGTTTATAAGTTTT
10633544 AAAAATTT
1 AAAAATTT
10633552 GTTAGAATTT
Statistics
Matches: 40, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
39 31 0.77
40 8 0.20
41 1 0.03
ACGTcount: A:0.35, C:0.03, G:0.05, T:0.57
Consensus pattern (39 bp):
AAAAATTTCATAAGCTTTTTTAAATTGTTTATAAGTTTT
Found at i:10635225 original size:9 final size:10
Alignment explanation
Indices: 10635210--10635239 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
10635200 TTCCTTTAGT
10635210 TTTTTTTATC
1 TTTTTTTATC
10635220 TTTTTTTATC
1 TTTTTTTATC
10635230 TTTTATTTAT
1 TTTT-TTTAT
10635240 TTGAATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 14 0.74
11 5 0.26
ACGTcount: A:0.13, C:0.07, G:0.00, T:0.80
Consensus pattern (10 bp):
TTTTTTTATC
Found at i:10635392 original size:61 final size:60
Alignment explanation
Indices: 10635266--10635443 Score: 191
Period size: 62 Copynumber: 2.9 Consensus size: 60
10635256 AATTTTAAAG
10635266 AAAAATAAAACCTTACGAACATATTGAAAGATTTTGCAATTTAAAAATAGATTTTAGAAAAT
1 AAAAATAAAACCTTAC-AACATATTGAAAG-TTTTGCAATTTAAAAATAGATTTTAGAAAAT
* * * *
10635328 AAAAATAAAACATTATCAACATATTGAAAGTTTTGTAATTTTCAAAATA-ATTTTTA-AAATT
1 AAAAATAAAACCTTA-CAACATATTGAAAGTTTTGCAA-TTTAAAAATAGA-TTTTAGAAAAT
* * **
10635389 AAAAAGAAAACCTTACCAACATATTGGAGAGTTTTTAAATTTAAAAA-ATGATTTT
1 AAAAATAAAACCTTA-CAACATATT-GAAAGTTTTGCAATTTAAAAATA-GATTTT
10635444 TTGGGAAAAT
Statistics
Matches: 99, Mismatches: 11, Indels: 13
0.80 0.09 0.11
Matches are distributed among these distances:
60 1 0.01
61 45 0.45
62 52 0.53
63 1 0.01
ACGTcount: A:0.49, C:0.08, G:0.08, T:0.34
Consensus pattern (60 bp):
AAAAATAAAACCTTACAACATATTGAAAGTTTTGCAATTTAAAAATAGATTTTAGAAAAT
Found at i:10636357 original size:20 final size:19
Alignment explanation
Indices: 10636304--10636367 Score: 69
Period size: 18 Copynumber: 3.4 Consensus size: 19
10636294 TTAACTTGAC
* *
10636304 TTTCTTTCTTC-TTTTTTT
1 TTTCTTTATTCATCTTTTT
10636322 TTTCTTT-TTCATCTTTTT
1 TTTCTTTATTCATCTTTTT
*
10636340 TTTCTTTATTGATCCTTTTT
1 TTTCTTTATTCAT-CTTTTT
*
10636360 TTCCTTTA
1 TTTCTTTA
10636368 CTTTTTTAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
17 3 0.08
18 20 0.50
19 4 0.10
20 13 0.32
ACGTcount: A:0.06, C:0.17, G:0.02, T:0.75
Consensus pattern (19 bp):
TTTCTTTATTCATCTTTTT
Found at i:10636794 original size:46 final size:47
Alignment explanation
Indices: 10636710--10636798 Score: 112
Period size: 46 Copynumber: 1.9 Consensus size: 47
10636700 ATTATATATT
* **
10636710 AAATTATTTATTTATATATTTATATTTATATATGTATTATATTAATA
1 AAATTATTTATTTATATATTTATATTTATAAAAATATTATATTAATA
10636757 AAATT-TTTATTTA-ATATCTTA-ATTTAATAAAAATATTATATT
1 AAATTATTTATTTATATAT-TTATATTT-ATAAAAATATTATATT
10636799 TATACATAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
45 8 0.22
46 24 0.65
47 5 0.14
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.55
Consensus pattern (47 bp):
AAATTATTTATTTATATATTTATATTTATAAAAATATTATATTAATA
Found at i:10637123 original size:12 final size:13
Alignment explanation
Indices: 10637101--10637133 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
10637091 ATTCAATTTT
10637101 TTTTTTATTTTAA
1 TTTTTTATTTTAA
10637114 TTTTTT-TTTTAA
1 TTTTTTATTTTAA
10637126 TCTTTTTA
1 T-TTTTTA
10637134 ATTGAAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
12 7 0.39
13 11 0.61
ACGTcount: A:0.18, C:0.03, G:0.00, T:0.79
Consensus pattern (13 bp):
TTTTTTATTTTAA
Found at i:10637510 original size:19 final size:21
Alignment explanation
Indices: 10637476--10637516 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
10637466 TTATACATGT
10637476 ATATTTATTATATTAA-TAAA
1 ATATTTATTATATTAATTAAA
*
10637496 ATATTT-TTATCTTAATTAAA
1 ATATTTATTATATTAATTAAA
10637516 A
1 A
10637517 AAATTAATAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 8 0.42
20 11 0.58
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.51
Consensus pattern (21 bp):
ATATTTATTATATTAATTAAA
Found at i:10641222 original size:9 final size:9
Alignment explanation
Indices: 10641208--10641238 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
10641198 AAGAGGAAGG
10641208 AAATAAAAA
1 AAATAAAAA
10641217 AAATAAAAA
1 AAATAAAAA
10641226 AAATAAAAGA
1 AAATAAAA-A
10641236 AAA
1 AAA
10641239 GGTTGAACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 17 0.81
10 4 0.19
ACGTcount: A:0.87, C:0.00, G:0.03, T:0.10
Consensus pattern (9 bp):
AAATAAAAA
Found at i:10645568 original size:66 final size:66
Alignment explanation
Indices: 10645491--10645625 Score: 243
Period size: 66 Copynumber: 2.0 Consensus size: 66
10645481 CTTATTGCAA
* *
10645491 CTTATTTGGTTAATTGAATGCCTTCTCGAGCTCTTGTTTTTAAAACACCTTGTCAAACTCTACTT
1 CTTATTTGGTTAACTGAATGCCTTCTCGAGCTCTTGTCTTTAAAACACCTTGTCAAACTCTACTT
10645556 G
66 G
*
10645557 CTTATTTGGTTAACTGAATGCCTTCTCGAGCTTTTGTCTTTAAAACACCTTGTCAAACTCTACTT
1 CTTATTTGGTTAACTGAATGCCTTCTCGAGCTCTTGTCTTTAAAACACCTTGTCAAACTCTACTT
10645622 G
66 G
10645623 CTT
1 CTT
10645626 CCTACCCACA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
66 66 1.00
ACGTcount: A:0.22, C:0.22, G:0.13, T:0.42
Consensus pattern (66 bp):
CTTATTTGGTTAACTGAATGCCTTCTCGAGCTCTTGTCTTTAAAACACCTTGTCAAACTCTACTT
G
Found at i:10650705 original size:1 final size:1
Alignment explanation
Indices: 10650694--10650724 Score: 53
Period size: 1 Copynumber: 31.0 Consensus size: 1
10650684 CCAACTCATT
*
10650694 CCCCGCCCCCCCCCCCCCCCCCCCCCCCCCC
1 CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
10650725 AACACACGGC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
1 28 1.00
ACGTcount: A:0.00, C:0.97, G:0.03, T:0.00
Consensus pattern (1 bp):
C
Found at i:10654242 original size:23 final size:21
Alignment explanation
Indices: 10654205--10654271 Score: 62
Period size: 24 Copynumber: 2.9 Consensus size: 21
10654195 TTTTTTTTTT
10654205 TTTTTTTCTAAATACATCATCAAA
1 TTTTTTT-TAAATAC-TCA-CAAA
* *
10654229 TTTTTTTTATATACTTACAAA
1 TTTTTTTTAAATACTCACAAA
10654250 TTTTTTTTCAAAAGTACTCACA
1 TTTTTTTT--AAA-TACTCACA
10654272 TACCAAATAT
Statistics
Matches: 36, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
21 12 0.33
22 2 0.06
23 8 0.22
24 14 0.39
ACGTcount: A:0.34, C:0.15, G:0.01, T:0.49
Consensus pattern (21 bp):
TTTTTTTTAAATACTCACAAA
Found at i:10656316 original size:34 final size:34
Alignment explanation
Indices: 10656248--10656316 Score: 86
Period size: 34 Copynumber: 2.0 Consensus size: 34
10656238 TTTGAAAAAT
* *
10656248 TTTAAGGATTCTCGAATATCTATTTCCAATAAGC
1 TTTAAGGATTCTCAAATATCTATTTCCAAAAAGC
**
10656282 TTTAA-GACTTCTCAAATATCTATTTTTAAAAAGC
1 TTTAAGGA-TTCTCAAATATCTATTTCCAAAAAGC
10656316 T
1 T
10656317 CGATTTCACT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
33 2 0.07
34 28 0.93
ACGTcount: A:0.35, C:0.16, G:0.09, T:0.41
Consensus pattern (34 bp):
TTTAAGGATTCTCAAATATCTATTTCCAAAAAGC
Found at i:10661595 original size:17 final size:16
Alignment explanation
Indices: 10661569--10661600 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
10661559 ACCTTCCTCC
10661569 ATTTTTTTTATTTTTG
1 ATTTTTTTTATTTTTG
10661585 ATTTATTTTTATTTTT
1 ATTT-TTTTTATTTTT
10661601 TAGATAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (16 bp):
ATTTTTTTTATTTTTG
Found at i:10664007 original size:21 final size:20
Alignment explanation
Indices: 10663983--10664022 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
10663973 TTAGTTTTTG
*
10663983 ATTTTCAATGTCTATTTTAAT
1 ATTTTCAAT-TATATTTTAAT
*
10664004 ATTTTTAATTATATTTTAA
1 ATTTTCAATTATATTTTAA
10664023 AAGATAAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 9 0.53
21 8 0.47
ACGTcount: A:0.33, C:0.05, G:0.03, T:0.60
Consensus pattern (20 bp):
ATTTTCAATTATATTTTAAT
Found at i:10664112 original size:23 final size:23
Alignment explanation
Indices: 10664076--10664119 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
10664066 AAATTATGAG
10664076 AATTAAATTCATAAATTATTTACA
1 AATTAAATTCATAAATT-TTTACA
*
10664100 AATT-AATTGATAAATTTTTA
1 AATTAAATTCATAAATTTTTA
10664120 TTAATCACTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 11 0.58
24 4 0.21
ACGTcount: A:0.48, C:0.05, G:0.02, T:0.45
Consensus pattern (23 bp):
AATTAAATTCATAAATTTTTACA
Found at i:10664393 original size:11 final size:11
Alignment explanation
Indices: 10664377--10664418 Score: 75
Period size: 11 Copynumber: 3.8 Consensus size: 11
10664367 AATCTCATAA
10664377 GAGATTTGTTT
1 GAGATTTGTTT
*
10664388 GAGATTTGTTA
1 GAGATTTGTTT
10664399 GAGATTTGTTT
1 GAGATTTGTTT
10664410 GAGATTTGT
1 GAGATTTGT
10664419 CAGATATTGC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 29 1.00
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:10664401 original size:22 final size:22
Alignment explanation
Indices: 10664376--10664418 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
10664366 AAATCTCATA
10664376 AGAGATTTGTTTGAGATTTGTT
1 AGAGATTTGTTTGAGATTTGTT
10664398 AGAGATTTGTTTGAGATTTGT
1 AGAGATTTGTTTGAGATTTGT
10664419 CAGATATTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.23, C:0.00, G:0.28, T:0.49
Consensus pattern (22 bp):
AGAGATTTGTTTGAGATTTGTT
Found at i:10664532 original size:52 final size:52
Alignment explanation
Indices: 10664476--10664588 Score: 165
Period size: 52 Copynumber: 2.2 Consensus size: 52
10664466 GAGAAAGAAA
* * * *
10664476 ATTCTTAATAGGTAAGTTTGACTTGCAAGAGAAGAATTCTAAAAGGAAATGG
1 ATTCTTAATAGGCAAATTTGACTTACAAGAGAAGAATTCTAAAAGGAAAGGG
* *
10664528 ATTCTTAATAGGCAAATTTGACTTACAAGAGAAGAATTCTAAGAGGAGAGGG
1 ATTCTTAATAGGCAAATTTGACTTACAAGAGAAGAATTCTAAAAGGAAAGGG
10664580 A-TCTTAATA
1 ATTCTTAATA
10664589 CATAGGTATG
Statistics
Matches: 55, Mismatches: 6, Indels: 1
0.89 0.10 0.02
Matches are distributed among these distances:
51 8 0.15
52 47 0.85
ACGTcount: A:0.41, C:0.09, G:0.22, T:0.28
Consensus pattern (52 bp):
ATTCTTAATAGGCAAATTTGACTTACAAGAGAAGAATTCTAAAAGGAAAGGG
Found at i:10667708 original size:4 final size:4
Alignment explanation
Indices: 10667699--10667760 Score: 61
Period size: 4 Copynumber: 15.5 Consensus size: 4
10667689 TACAATTTTA
* ** * * * *
10667699 ATAT ATAT ATAT ATAT ACAT GCAT ACAT ACAT ACAT ACAT ATAT ATAT
1 ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT ATAT
10667747 ATAT ATAT ATAT AT
1 ATAT ATAT ATAT AT
10667761 TAGAGTGAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 54 1.00
ACGTcount: A:0.48, C:0.10, G:0.02, T:0.40
Consensus pattern (4 bp):
ATAT
Found at i:10671647 original size:3 final size:3
Alignment explanation
Indices: 10671641--10671682 Score: 75
Period size: 3 Copynumber: 14.0 Consensus size: 3
10671631 CTAAATGATG
*
10671641 ATA ATA ATA ACA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
10671683 TTATTATTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:10671687 original size:3 final size:3
Alignment explanation
Indices: 10671681--10671709 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
10671671 ATAATAATAA
10671681 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
10671710 AAATGCCTAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:10672323 original size:22 final size:22
Alignment explanation
Indices: 10672250--10672323 Score: 60
Period size: 22 Copynumber: 3.4 Consensus size: 22
10672240 TAAAATGTTT
* *
10672250 TGTTCGAAAGTCTTGAAAATTA
1 TGTTCGAAAGTTTTAAAAATTA
* * * *
10672272 TG-TCCAGAGGTTTTACAAATAA
1 TGTTCGA-AAGTTTTAAAAATTA
**
10672294 TGCCCGAAAGTTTTAAAAATTA
1 TGTTCGAAAGTTTTAAAAATTA
10672316 TGTTCGAA
1 TGTTCGAA
10672324 TGTCTTACAA
Statistics
Matches: 37, Mismatches: 13, Indels: 4
0.69 0.24 0.07
Matches are distributed among these distances:
21 3 0.08
22 32 0.86
23 2 0.05
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (22 bp):
TGTTCGAAAGTTTTAAAAATTA
Found at i:10672463 original size:147 final size:147
Alignment explanation
Indices: 10672217--10672553 Score: 333
Period size: 147 Copynumber: 2.3 Consensus size: 147
10672207 ATCCTAATTA
* ** *
10672217 GAGGCATTGAAACTTTGAAAATTTAAAATGTTTTGTTCGAAAGTCTTGAAAATTATGTCCAGAGG
1 GAGGCATTGAAACTTTGAAAATTTAAAATATTTTACTCGAAAGTCTTGAAAATTATGTCCAAAGG
* * * ** * **
10672282 TTTTACAAATAATGCCCGAAAGTTTTAAAAATTATGTTC-GAATGTCTTACAAATCTCGACATCT
66 TCTTACAAATAATGCCAGAAAGTCTTAAAAATTATGCCCAG-AGGTCTTACAAATCTAAACATCT
10672346 TTAAATGCTCCTCATATC
130 TTAAATGCTCCTCATATC
* *
10672364 GAGGCATTGAAACTTTGAAAATTTAAAATATTTTACTCGGAGGTCTT-ACAAATTATG-CCTAAA
1 GAGGCATTGAAACTTTGAAAATTTAAAATATTTTACTCGAAAGTCTTGA-AAATTATGTCC-AAA
* * * * * * * * * * *
10672427 GGTCTTATAAATTATGCTAGGAGGTCTTACAGATTATGCCCAGAGGTTTTATAAATCTAAACTTT
64 GGTCTTACAAATAATGCCAGAAAGTCTTAAAAATTATGCCCAGAGGTCTTACAAATCTAAACATC
*
10672492 TTTGAATGCTCCTCATATC
129 TTTAAATGCTCCTCATATC
* * *
10672511 AAAG-ATAATAAAACTTTGAAAATTTAAAATATTTTACTC-AAAG
1 GAGGCAT--TGAAACTTTGAAAATTTAAAATATTTTACTCGAAAG
10672554 GTCGTAGAGA
Statistics
Matches: 154, Mismatches: 31, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
146 5 0.03
147 118 0.77
148 31 0.20
ACGTcount: A:0.36, C:0.14, G:0.15, T:0.35
Consensus pattern (147 bp):
GAGGCATTGAAACTTTGAAAATTTAAAATATTTTACTCGAAAGTCTTGAAAATTATGTCCAAAGG
TCTTACAAATAATGCCAGAAAGTCTTAAAAATTATGCCCAGAGGTCTTACAAATCTAAACATCTT
TAAATGCTCCTCATATC
Found at i:10672472 original size:22 final size:22
Alignment explanation
Indices: 10672403--10672482 Score: 90
Period size: 22 Copynumber: 3.6 Consensus size: 22
10672393 ATTTTACTCG
10672403 GAGGTCTTACAAATTATGCCTA
1 GAGGTCTTACAAATTATGCCTA
* *
10672425 AAGGTCTTATAAATTATG-CTA
1 GAGGTCTTACAAATTATGCCTA
* *
10672446 GGAGGTCTTACAGATTATGCCCA
1 -GAGGTCTTACAAATTATGCCTA
* *
10672469 GAGGTTTTATAAAT
1 GAGGTCTTACAAAT
10672483 CTAAACTTTT
Statistics
Matches: 47, Mismatches: 9, Indels: 4
0.78 0.15 0.07
Matches are distributed among these distances:
21 3 0.06
22 42 0.89
23 2 0.04
ACGTcount: A:0.33, C:0.14, G:0.20, T:0.34
Consensus pattern (22 bp):
GAGGTCTTACAAATTATGCCTA
Found at i:10672916 original size:105 final size:103
Alignment explanation
Indices: 10672451--10672962 Score: 504
Period size: 104 Copynumber: 4.9 Consensus size: 103
10672441 TGCTAGGAGG
* * * * * * *
10672451 TCTTACAGATTATGCCCAGAGGTTTTATAAATCTAAACTTTTTTGAATGCTCCTCATATCAAAGA
1 TCTTAGAGATTATGCCGA-AGGTCTTACAAATCTAAACATCTTTGAATGCTCCTCATATCAAAGG
* * * * *
10672516 TAATAAAACTTTGAAAATTTAAAATATTTTACTCAAAGG
65 CATTGAAACTTTGAAAATTTAAAATATTTTACCCAAAGA
* * * * * * * * *
10672555 TCGTAGAGATTATGCTCGGAGGTCTTAAAAAGCTCAACATCTTTGAATGTTTCTCATAACAAAAG
1 TCTTAGAGATTATGC-CGAAGGTCTTACAAATCTAAACATCTTTGAATGCTCCTCATATCAAAGG
* * *
10672620 TATTGAAACTTTGAAAATTTAAAATGTTTTGCCCAAAGA
65 CATTGAAACTTTGAAAATTTAAAATATTTTACCCAAAGA
* * * * * * * * *
10672659 TCTTAAAAATTATGCAAGAAGATCTTATAAATCTCAAA-ATCTTTCAATGCTCTTTATATCAGAG
1 TCTTAGAGATTATGC-CGAAGGTCTTACAAATCT-AAACATCTTTGAATGCTCCTCATATCAAAG
* * **
10672723 GCATTGAAACTTTGAAAATTTAGAATATTTTGCTTAAAGA
64 GCATTGAAACTTTGAAAATTTAAAATATTTTACCCAAAGA
* * * * *
10672763 TCTTAGAGATTATGCCTGAATGTCTTACAAATCTCAATATTTTTGAATGCTCCTCATATCAGAGG
1 TCTTAGAGATTATGCC-GAAGGTCTTACAAATCTAAACATCTTTGAATGCTCCTCATATCAAAGG
* * *
10672828 CATTAAAACTTTGAAAATTTAAAAATGTTTTACCCAAAAA
65 CATTGAAACTTTGAAAATTT-AAAATATTTTACCCAAAGA
* * * *
10672868 TCTTAGAGATTATGCTCGAAGGTCTTACAAATCTAAACATCTTTGAATGCTTCACGTATCAAAGA
1 TCTTAGAGATTATGC-CGAAGGTCTTACAAATCTAAACATCTTTGAATGCTCCTCATATCAAAGG
*
10672933 CATTGAAACTTTAAAAATTTAAAATATTTT
65 CATTGAAACTTTGAAAATTTAAAATATTTT
10672963 GCCTAGAGGT
Statistics
Matches: 328, Mismatches: 74, Indels: 12
0.79 0.18 0.03
Matches are distributed among these distances:
103 2 0.01
104 237 0.72
105 88 0.27
106 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.12, T:0.35
Consensus pattern (103 bp):
TCTTAGAGATTATGCCGAAGGTCTTACAAATCTAAACATCTTTGAATGCTCCTCATATCAAAGGC
ATTGAAACTTTGAAAATTTAAAATATTTTACCCAAAGA
Found at i:10672961 original size:209 final size:206
Alignment explanation
Indices: 10672451--10672964 Score: 559
Period size: 208 Copynumber: 2.5 Consensus size: 206
10672441 TGCTAGGAGG
* * * * *
10672451 TCTTACAGATTATGCCCAGAGGTTTTATAAATCTAAACTTTTTTGAATGCTCCTCA-TATCAAAG
1 TCTTAAAGATTATGCCGA-AGGTCTTATAAATCTAAACATCTTTGAATGCT--TCACTATCAAAG
* * * * * *
10672515 ATAATAAAACTTTGAAAATTTAAAATATTTTACTCAAAGGTCGTAGAGATTATGCTCGGAGGTCT
63 ACATTGAAACTTTGAAAATTTAAAATATTTTGCTCAAAGATCGTAGAGATTATGCTCGAAGGTCT
* * * *
10672580 TAAAAAGCTCAACATCTTTGAATGTTTCTCATAACAAAAGTATTGAAACTTTGAAAATTTAAAAT
128 TAAAAAGCTCAACATCTTTGAATGCTCCTCATAACAAAAGCATTAAAACTTTGAAAATTTAAAAT
* *
10672645 GTTTTGCCCAAAGA
193 GTTTTACCCAAAAA
* * * * * *
10672659 TCTTAAAAATTATGCAAGAAGATCTTATAAATCTCAAA-ATCTTTCAATGCTCTTTA-TATCAGA
1 TCTTAAAGATTATGC-CGAAGGTCTTATAAATCT-AAACATCTTTGAATG--CTTCACTATCAAA
* * * * *
10672722 GGCATTGAAACTTTGAAAATTTAGAATATTTTGCTTAAAGATCTTAGAGATTATGC-CTGAATGT
62 GACATTGAAACTTTGAAAATTTAAAATATTTTGCTCAAAGATCGTAGAGATTATGCTC-GAAGGT
* * * * * * *
10672786 CTTACAAATCTCAATATTTTTGAATGCTCCTCATATCAGAGGCATTAAAACTTTGAAAATTTAAA
126 CTTAAAAAGCTCAACATCTTTGAATGCTCCTCATAACAAAAGCATTAAAACTTTGAAAATTT-AA
10672851 AATGTTTTACCCAAAAA
190 AATGTTTTACCCAAAAA
* *
10672868 TCTTAGAGATTATGCTCGAAGGTCTTACAAATCTAAACATCTTTGAATGCTTCACGTATCAAAGA
1 TCTTAAAGATTATGC-CGAAGGTCTTATAAATCTAAACATCTTTGAATGCTTCAC-TATCAAAGA
*
10672933 CATTGAAACTTTAAAAATTTAAAATATTTTGC
64 CATTGAAACTTTGAAAATTTAAAATATTTTGC
10672965 CTAGAGGTCT
Statistics
Matches: 250, Mismatches: 47, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
207 5 0.02
208 147 0.59
209 96 0.38
210 2 0.01
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.35
Consensus pattern (206 bp):
TCTTAAAGATTATGCCGAAGGTCTTATAAATCTAAACATCTTTGAATGCTTCACTATCAAAGACA
TTGAAACTTTGAAAATTTAAAATATTTTGCTCAAAGATCGTAGAGATTATGCTCGAAGGTCTTAA
AAAGCTCAACATCTTTGAATGCTCCTCATAACAAAAGCATTAAAACTTTGAAAATTTAAAATGTT
TTACCCAAAAA
Found at i:10673048 original size:22 final size:22
Alignment explanation
Indices: 10673023--10673197 Score: 113
Period size: 22 Copynumber: 7.9 Consensus size: 22
10673013 TTGATTTTGG
*
10673023 GTGCTAGCTAATTTGGGCTTAA
1 GTGCTAGCTAATCTGGGCTTAA
*
10673045 GTGCTAGCTAATCTGGACTT-A
1 GTGCTAGCTAATCTGGGCTTAA
* **
10673066 GATGCTAGCTAATTTAAGCTTAA
1 G-TGCTAGCTAATCTGGGCTTAA
* * * **
10673089 TGTG-TAGCTAATTTAGGTTTGG
1 -GTGCTAGCTAATCTGGGCTTAA
** *
10673111 GCACTAGCTAATCTGGGCTTAG
1 GTGCTAGCTAATCTGGGCTTAA
* *
10673133 GTG-TCAGATAATCTAGGCTTAAA
1 GTGCT-AGCTAATCTGGGCTT-AA
* **
10673156 GTGCCAGCTAATCTGGGCTTGT
1 GTGCTAGCTAATCTGGGCTTAA
* *
10673178 GTGCCAACTAATCTGGGCTT
1 GTGCTAGCTAATCTGGGCTT
10673198 GGATGCCAAC
Statistics
Matches: 119, Mismatches: 27, Indels: 14
0.74 0.17 0.09
Matches are distributed among these distances:
21 4 0.03
22 94 0.79
23 20 0.17
24 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.26, T:0.34
Consensus pattern (22 bp):
GTGCTAGCTAATCTGGGCTTAA
Found at i:10673198 original size:22 final size:21
Alignment explanation
Indices: 10673118--10673227 Score: 96
Period size: 22 Copynumber: 5.0 Consensus size: 21
10673108 TGGGCACTAG
*
10673118 CTAATCTGGGCTTAGGTGTCAGA
1 CTAATCTGGGCTT-GGTGCCA-A
* * *
10673141 -TAATCTAGGCTTAAAGTGCCAG
1 CTAATCTGGGCTT--GGTGCCAA
10673163 CTAATCTGGGCTTGTGTGCCAA
1 CTAATCTGGGCTTG-GTGCCAA
10673185 CTAATCTGGGCTTGGATGCCAA
1 CTAATCTGGGCTTGG-TGCCAA
* *
10673207 CTAATTTAGGCTTGGGTGCCA
1 CTAATCTGGGCTT-GGTGCCA
10673228 GTTGATCTAG
Statistics
Matches: 73, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
21 1 0.01
22 53 0.73
23 19 0.26
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (21 bp):
CTAATCTGGGCTTGGTGCCAA
Found at i:10673601 original size:26 final size:26
Alignment explanation
Indices: 10673565--10673625 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
10673555 AGCAGATGCC
* * *
10673565 ATGATGCAAATGCAAATGTCTTTCTT
1 ATGATGTAAATGCAAATGCCTTGCTT
** *
10673591 ATGATGTAAATGTGAATGCCTTGGTT
1 ATGATGTAAATGCAAATGCCTTGCTT
10673617 ATGATGTAA
1 ATGATGTAA
10673626 TTGATGTAAA
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (26 bp):
ATGATGTAAATGCAAATGCCTTGCTT
Found at i:10673678 original size:41 final size:41
Alignment explanation
Indices: 10673619--10673740 Score: 129
Period size: 41 Copynumber: 3.0 Consensus size: 41
10673609 CCTTGGTTAT
* * *
10673619 GATGTAATTGATGTAAATGCGAATATCTTTCTCATGCTACA
1 GATGTAAGTGATGCAAATGCGAATATCTTTCTCATGATACA
* * * *
10673660 GATGTAAGTAATGCAAATGTGAATATCTTTTTCATGATGCA
1 GATGTAAGTGATGCAAATGCGAATATCTTTCTCATGATACA
* * * *
10673701 TATGCAAGTGATGCAAATGCGAGTGTCCTTT-TCATGATAC
1 GATGTAAGTGATGCAAATGCGAATAT-CTTTCTCATGATAC
10673741 GAATGTGAAT
Statistics
Matches: 66, Mismatches: 14, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
41 62 0.94
42 4 0.06
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (41 bp):
GATGTAAGTGATGCAAATGCGAATATCTTTCTCATGATACA
Found at i:10674985 original size:530 final size:529
Alignment explanation
Indices: 10674435--10675496 Score: 2000
Period size: 530 Copynumber: 2.0 Consensus size: 529
10674425 CTTTTATATC
*
10674435 CTTAAGAGTGACTCTAGCTTTAAACTACAATTTTTTAGTTTTCACTTTAGAGCTATATTTTCTAA
1 CTTAAGAGTGACTCTAGCTTTAAACTACAATTTTTGAGTTTTCACTTTAGAGCTATATTTTCTAA
*
10674500 TAATGAAGAACTTGGTAACATCTTACCAATCAATAACAAGTATATACATATTTTCAAGGATATAG
66 TAATGAAGAACTTGGTAACATCTTACCAATCAATAACAAGTATATACAAATTTTCAAGGATATAG
10674565 CACTTTAATTTAAGTATTCATATTTGATAAAAATGAACTTTTAAAGGTATGGAATGCATGCCAAG
131 CACTTTAATTTAAGTATTCATATTTGATAAAAATGAACTTTTAAAGGTATGGAATGCATGCCAAG
10674630 GTTCAGGGTTTTGAAAGAATGAAAAAATAAGCTTAAAATATGTTATTCAGGATAATTAGGCCAAA
196 GTTCAGGGTTTTGAAAGAATGAAAAAATAAGCTTAAAATATGTTATTCAGGATAATTAGGCCAAA
10674695 GATCTTATAGAGCA-TTCTCTGGATGAAAAGTTATATGTCTTTCTTTCTTTGCTTTTTTTTTTTT
261 GATCTTATAGAGCATTTCTCTGGATGAAAAGTTATATGTCTTTCTTTCTTTGC-TTTTTTTTTTT
10674759 TTATGGATTCTAACTGAAGCTTCATTCATTTTTTACGTCAGATCTTCATCTTCGAGGTGCATGTC
325 TTATGGATTCTAACTGAAGCTTCATTCATTTTTTACGTCAGATCTTCATCTTCGAGGTGCATGTC
10674824 TTTCTTTTTTTACTCTTTTTTTTTTTGAAAACATCTAACTTCAACTTTAACATTTTATTTTCTTG
390 TTTCTTTTTTTACTC-TTTTTTTTTTGAAAACATCTAACTTCAACTTTAACATTTTATTTTCTTG
* *
10674889 AAGTTTTACTTAAGATTTTAACTGAAACTTTATTCACTTTTTGCCCTAAATTTTTATATCTGAAG
454 AAGTTTTACTTAAGATTTTAACTAAAACTTTATTCACTTTTTACCCTAAATTTTTATATCTGAAG
10674954 TACATGTCTTT
519 TACATGTCTTT
* * *
10674965 CTTAAGAGTGACTTTAGCTTTAAACTACAATTTTTGGGTTTTCACTTTAGAGCTATATTTTTTAA
1 CTTAAGAGTGACTCTAGCTTTAAACTACAATTTTTGAGTTTTCACTTTAGAGCTATATTTTCTAA
* *
10675030 TAATGAAGAACTTGGTAACATCTTGCCAATCAATAACAAGTATATATAAATTTTCAAGGATATAG
66 TAATGAAGAACTTGGTAACATCTTACCAATCAATAACAAGTATATACAAATTTTCAAGGATATAG
* *
10675095 CACTTTAATTTAAGTATTCGTATTTGATAAAAATGAACTTTTAAAGGTATGGAATGTATGCCAAG
131 CACTTTAATTTAAGTATTCATATTTGATAAAAATGAACTTTTAAAGGTATGGAATGCATGCCAAG
10675160 GTTCAGGGTTTTGAAAGAATGAAAAAATAAGCTTAAAATATGTTATTCAGGATAATTAGGCCAAA
196 GTTCAGGGTTTTGAAAGAATGAAAAAATAAGCTTAAAATATGTTATTCAGGATAATTAGGCCAAA
10675225 GATCTTATAGAGCATTTCTCTGGATGAAAAGTTATATGTCTTTCTTTCTTTGCTTTTTTTTTTTT
261 GATCTTATAGAGCATTTCTCTGGATGAAAAGTTATATGTCTTTCTTTCTTTGCTTTTTTTTTTTT
10675290 TATGGATTCTAACTGAAGCTTCATTCATTTTTTACGTCAGATCTTCATCTTCGAGGTGCATGTCT
326 TATGGATTCTAACTGAAGCTTCATTCATTTTTTACGTCAGATCTTCATCTTCGAGGTGCATGTCT
10675355 TTCTTTTTTTACTCTTTTTTTTTTGAAAACATCTAACTTCAACTTTAACATTTTATTTTCTTGAA
391 TTCTTTTTTTACTCTTTTTTTTTTGAAAACATCTAACTTCAACTTTAACATTTTATTTTCTTGAA
10675420 GTTTTACTTAAGATTTTAACTAAAACTTTATTCACTTTTTACCCTAAATTTTTATATCTGAAGTA
456 GTTTTACTTAAGATTTTAACTAAAACTTTATTCACTTTTTACCCTAAATTTTTATATCTGAAGTA
10675485 CATGTCTTT
521 CATGTCTTT
10675494 CTT
1 CTT
10675497 TTTTTTGCTC
Statistics
Matches: 520, Mismatches: 11, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
529 126 0.24
530 356 0.68
531 38 0.07
ACGTcount: A:0.31, C:0.13, G:0.13, T:0.43
Consensus pattern (529 bp):
CTTAAGAGTGACTCTAGCTTTAAACTACAATTTTTGAGTTTTCACTTTAGAGCTATATTTTCTAA
TAATGAAGAACTTGGTAACATCTTACCAATCAATAACAAGTATATACAAATTTTCAAGGATATAG
CACTTTAATTTAAGTATTCATATTTGATAAAAATGAACTTTTAAAGGTATGGAATGCATGCCAAG
GTTCAGGGTTTTGAAAGAATGAAAAAATAAGCTTAAAATATGTTATTCAGGATAATTAGGCCAAA
GATCTTATAGAGCATTTCTCTGGATGAAAAGTTATATGTCTTTCTTTCTTTGCTTTTTTTTTTTT
TATGGATTCTAACTGAAGCTTCATTCATTTTTTACGTCAGATCTTCATCTTCGAGGTGCATGTCT
TTCTTTTTTTACTCTTTTTTTTTTGAAAACATCTAACTTCAACTTTAACATTTTATTTTCTTGAA
GTTTTACTTAAGATTTTAACTAAAACTTTATTCACTTTTTACCCTAAATTTTTATATCTGAAGTA
CATGTCTTT
Found at i:10677986 original size:12 final size:12
Alignment explanation
Indices: 10677969--10677996 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
10677959 GTTCTATAAA
10677969 GACAACCTATTT
1 GACAACCTATTT
10677981 GACAACCTATTT
1 GACAACCTATTT
10677993 GACA
1 GACA
10677997 TCATATATTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.36, C:0.25, G:0.11, T:0.29
Consensus pattern (12 bp):
GACAACCTATTT
Found at i:10681295 original size:35 final size:35
Alignment explanation
Indices: 10681181--10681297 Score: 105
Period size: 35 Copynumber: 3.3 Consensus size: 35
10681171 TGTACATGCA
* * *
10681181 ATGGAATGCATGTACTATCTATTTATG-TGAATGTG
1 ATGGAATGCATGTACTATCTA-TTAAGATGTATGAG
* * * *
10681216 ATGGAATACATGTATTACCTATTAAGATGCT-TGAA
1 ATGGAATGCATGTACTATCTATTAAGATG-TATGAG
* *
10681251 ATGTG-ATGCATGTACTATCTATTAGGATGTATGGG
1 ATG-GAATGCATGTACTATCTATTAAGATGTATGAG
10681286 ATGGAATGCATG
1 ATGGAATGCATG
10681298 CATTATATTA
Statistics
Matches: 64, Mismatches: 13, Indels: 10
0.74 0.15 0.11
Matches are distributed among these distances:
34 6 0.09
35 57 0.89
36 1 0.02
ACGTcount: A:0.31, C:0.09, G:0.24, T:0.36
Consensus pattern (35 bp):
ATGGAATGCATGTACTATCTATTAAGATGTATGAG
Found at i:10683225 original size:3 final size:3
Alignment explanation
Indices: 10683212--10683243 Score: 55
Period size: 3 Copynumber: 10.3 Consensus size: 3
10683202 ATCTTAAATG
10683212 ATA ACTA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA A-TA ATA ATA ATA ATA ATA ATA ATA ATA A
10683244 AAAAAAATTT
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 25 0.89
4 3 0.11
ACGTcount: A:0.66, C:0.03, G:0.00, T:0.31
Consensus pattern (3 bp):
ATA
Found at i:10690398 original size:125 final size:123
Alignment explanation
Indices: 10690129--10690581 Score: 397
Period size: 125 Copynumber: 3.7 Consensus size: 123
10690119 ATTTGAAGGA
* * * * *
10690129 CTTAAAGATTATGCCCGAAGGTCTCAGAGATCTTGTCATTTATGAAAGCTTC-TTTGATCAGAGG
1 CTTAAAGATTATG-CCGAAGGTCTTA-AAATCTTGTTATGTATGAAAGC-TCATCTGATCAGAGG
* * * ** *
10690193 CCTTGAAACTTT-----A--AAAATCTTTTGCTCAGAGGTATTAGAGATTATACCTGAAAGT
63 CCTTGAAACTTTAAAAAATTAAAATGTTTTGCCCA-AAGTCCTAGAGATTATACCCGAAAGT
* * * * * * *
10690248 CTCAAAGATTATGCCCAAAGATCTTACAAATCTTGTTATGTATAAAAGCGCATCTGATTAGAGGT
1 CTTAAAGATTATG-CCGAAGGTCTTA-AAATCTTGTTATGTATGAAAGCTCATCTGATCAGAGGC
* *
10690313 CTTGAAATTTTAAAAAATTAAAATGTTTTGGCCAATA-TCCTAGAGATTATACCCGAAAGT
64 CTTGAAACTTTAAAAAATTAAAATGTTTTGCCCAA-AGTCCTAGAGATTATACCCGAAAGT
* * * * * * *
10690373 TTTAGAGATTATGTCCGAAGGTCTTAAAATTTTATAATGTATGAAAGCTCATCCGATCAAAGGCC
1 CTTAAAGATTATG-CCGAAGGTCTTAAAATCTTGTTATGTATGAAAGCTCATCTGATCAGAGGCC
* * *
10690438 TTGAAACTTTAAAAAATTAAAATGTTTTGCCCAAAGGTCTTAGAGATTATGCCC-AGAGAT
65 TTGAAACTTTAAAAAATTAAAATGTTTTGCCCAAA-GTCCTAGAGATTATACCCGAAAG-T
* * * * *
10690498 CTTAAAGATTATAGCCGGAGGTTTTATAAATCTTGTTACT-CATGAAATCTCATTTGATCAGAGG
1 CTTAAAGATTAT-GCCGAAGGTCTTA-AAATCTTGTTA-TGTATGAAAGCTCATCTGATCAGAGG
10690562 CCTTGAAACTTTAAAAAATT
63 CCTTGAAACTTTAAAAAATT
10690582 TAAACATTCT
Statistics
Matches: 266, Mismatches: 53, Indels: 23
0.78 0.15 0.07
Matches are distributed among these distances:
118 1 0.00
119 60 0.23
123 1 0.00
124 66 0.25
125 77 0.29
126 60 0.23
127 1 0.00
ACGTcount: A:0.35, C:0.15, G:0.17, T:0.33
Consensus pattern (123 bp):
CTTAAAGATTATGCCGAAGGTCTTAAAATCTTGTTATGTATGAAAGCTCATCTGATCAGAGGCCT
TGAAACTTTAAAAAATTAAAATGTTTTGCCCAAAGTCCTAGAGATTATACCCGAAAGT
Found at i:10690500 original size:22 final size:22
Alignment explanation
Indices: 10690465--10690509 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
10690455 TAAAATGTTT
* *
10690465 TGCCCAAAGGTCTTAGAGATTA
1 TGCCCAAAGATCTTAAAGATTA
*
10690487 TGCCCAGAGATCTTAAAGATTA
1 TGCCCAAAGATCTTAAAGATTA
10690509 T
1 T
10690510 AGCCGGAGGT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (22 bp):
TGCCCAAAGATCTTAAAGATTA
Found at i:10690675 original size:41 final size:41
Alignment explanation
Indices: 10690630--10690809 Score: 163
Period size: 41 Copynumber: 4.4 Consensus size: 41
10690620 ATTCGCTTGG
* *
10690630 AGGTC-TTGGAAATCATGTAAAAAATTTAAGATTTTG-TCCGA
1 AGGTCTTTGAAAATCAT-TCAAAAATTTAAGATTTTGCT-CGA
*
10690671 AGGTCTTTGAAAATCATTCAAAAATATAAGATTTTGCTCGA
1 AGGTCTTTGAAAATCATTCAAAAATTTAAGATTTTGCTCGA
* * * * *
10690712 AGGTCTTTGAAAATCATTCAAAAATTGAAAAGTTTAC-CTAA
1 AGGTCTTTGAAAATCATTCAAAAATTTAAGATTTTGCTC-GA
* * * * *
10690753 AGGTCTTTGGAAATCATTTCGAAAA-CTAAGATTTTACTCAA
1 AGGTCTTTGAAAATCA-TTCAAAAATTTAAGATTTTGCTCGA
*
10690794 AGGTC-ATGAAAATCAT
1 AGGTCTTTGAAAATCAT
10690810 GTACTCATTT
Statistics
Matches: 117, Mismatches: 17, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
39 1 0.01
40 9 0.08
41 88 0.75
42 19 0.16
ACGTcount: A:0.39, C:0.12, G:0.16, T:0.33
Consensus pattern (41 bp):
AGGTCTTTGAAAATCATTCAAAAATTTAAGATTTTGCTCGA
Found at i:10691171 original size:26 final size:26
Alignment explanation
Indices: 10691119--10691173 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
10691109 TTATGTGAGT
** *
10691119 ATGCAAATGTCTCTTTTCAAATGCAA
1 ATGCAAATGTCTCTTCCCAAATACAA
**
10691145 ATGCAAATGTCTCTTCCCTTATACAA
1 ATGCAAATGTCTCTTCCCAAATACAA
10691171 ATG
1 ATG
10691174 TTCCATACAA
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.22, G:0.11, T:0.35
Consensus pattern (26 bp):
ATGCAAATGTCTCTTCCCAAATACAA
Found at i:10692754 original size:7 final size:7
Alignment explanation
Indices: 10692742--10692783 Score: 52
Period size: 7 Copynumber: 6.1 Consensus size: 7
10692732 TATTCTTCCC
10692742 TCATTTT
1 TCATTTT
10692749 TCATTTT
1 TCATTTT
*
10692756 TC-TCTT
1 TCATTTT
10692762 TC-TTTT
1 TCATTTT
10692768 TCATTTT
1 TCATTTT
10692775 CTCATTTT
1 -TCATTTT
10692783 T
1 T
10692784 TTTGTTTTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
6 10 0.32
7 14 0.45
8 7 0.23
ACGTcount: A:0.10, C:0.19, G:0.00, T:0.71
Consensus pattern (7 bp):
TCATTTT
Found at i:10692775 original size:18 final size:19
Alignment explanation
Indices: 10692745--10692786 Score: 61
Period size: 18 Copynumber: 2.3 Consensus size: 19
10692735 TCTTCCCTCA
10692745 TTTTTCATTTTTCTC-TTT
1 TTTTTCATTTTTCTCATTT
10692763 CTTTTTCA-TTTTCTCATTT
1 -TTTTTCATTTTTCTCATTT
10692782 TTTTT
1 TTTTT
10692787 GTTTTTTTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 12 0.55
19 10 0.45
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTCATTTTTCTCATTT
Found at i:10692792 original size:18 final size:18
Alignment explanation
Indices: 10692745--10692792 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 18
10692735 TCTTCCCTCA
10692745 TTTTTCATTTTTCTCTTTC
1 TTTTTC-TTTTTCTCTTTC
*
10692764 TTTTTCATTTTCTCATTT-
1 TTTTTCTTTTTCTC-TTTC
*
10692782 TTTTTGTTTTT
1 TTTTTCTTTTT
10692793 TTTATTTTTG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 16 0.64
19 9 0.36
ACGTcount: A:0.06, C:0.15, G:0.02, T:0.77
Consensus pattern (18 bp):
TTTTTCTTTTTCTCTTTC
Found at i:10693291 original size:15 final size:14
Alignment explanation
Indices: 10693241--10693328 Score: 60
Period size: 14 Copynumber: 6.4 Consensus size: 14
10693231 ATGTCAAAGA
*
10693241 TTTTTCCTCTT-TT
1 TTTTTCTTCTTCTT
10693254 TCTTTTCTT-TTCATT
1 T-TTTTCTTCTTC-TT
*
10693269 TTTCTCTTCTTACTT
1 TTTTTCTTCTT-CTT
* *
10693284 TTTTTCTTTTTCTC
1 TTTTTCTTCTTCTT
*
10693298 TTTTTGTTC-TCTCT
1 TTTTTCTTCTTCT-T
10693312 TTTTT-TTCTT-TT
1 TTTTTCTTCTTCTT
10693324 TTTTT
1 TTTTT
10693329 TATTTTTTTT
Statistics
Matches: 60, Mismatches: 8, Indels: 15
0.72 0.10 0.18
Matches are distributed among these distances:
12 6 0.10
13 10 0.17
14 27 0.45
15 16 0.27
16 1 0.02
ACGTcount: A:0.02, C:0.19, G:0.01, T:0.77
Consensus pattern (14 bp):
TTTTTCTTCTTCTT
Found at i:10694024 original size:14 final size:13
Alignment explanation
Indices: 10694005--10694050 Score: 65
Period size: 13 Copynumber: 3.5 Consensus size: 13
10693995 ACAAAAGAAA
10694005 TTTTTTTCTCTTT
1 TTTTTTTCTCTTT
*
10694018 CTTTTTTTCCCTTT
1 -TTTTTTTCTCTTT
*
10694032 TTTTTTTTTCTTT
1 TTTTTTTCTCTTT
10694045 TTTTTT
1 TTTTTT
10694051 ACAAAGCTCT
Statistics
Matches: 29, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
13 17 0.59
14 12 0.41
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (13 bp):
TTTTTTTCTCTTT
Found at i:10710775 original size:17 final size:18
Alignment explanation
Indices: 10710753--10710795 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
10710743 CGATCCGAAA
10710753 TTAATAAAATA-TTATTT
1 TTAATAAAATACTTATTT
*
10710770 TTAATATAAAATACTTTTTT
1 TT-A-ATAAAATACTTATTT
10710790 TTAATA
1 TTAATA
10710796 TAAACATAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 5
0.79 0.04 0.18
Matches are distributed among these distances:
17 2 0.09
18 4 0.18
19 9 0.41
20 7 0.32
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.53
Consensus pattern (18 bp):
TTAATAAAATACTTATTT
Found at i:10710780 original size:19 final size:20
Alignment explanation
Indices: 10710756--10710799 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
10710746 TCCGAAATTA
10710756 ATAAAATA-TTATTTTTAAT
1 ATAAAATACTTATTTTTAAT
*
10710775 ATAAAATACTTTTTTTTAAT
1 ATAAAATACTTATTTTTAAT
10710795 ATAAA
1 ATAAA
10710800 CATAAAATTA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 8 0.35
20 15 0.65
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (20 bp):
ATAAAATACTTATTTTTAAT
Found at i:10717060 original size:3 final size:3
Alignment explanation
Indices: 10717054--10717109 Score: 67
Period size: 3 Copynumber: 18.7 Consensus size: 3
10717044 CCTCTGACTT
* ** * *
10717054 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGT TGC TTT TGT TGT TGC
1 TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC TGC
10717102 TGC TGC TG
1 TGC TGC TG
10717110 AGGCGCAGAG
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
3 47 1.00
ACGTcount: A:0.00, C:0.25, G:0.32, T:0.43
Consensus pattern (3 bp):
TGC
Found at i:10718112 original size:11 final size:11
Alignment explanation
Indices: 10718096--10718122 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
10718086 TATTGCTATT
10718096 TAATTAATTAA
1 TAATTAATTAA
10718107 TAATTAATTAA
1 TAATTAATTAA
10718118 TAATT
1 TAATT
10718123 TAATATATAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (11 bp):
TAATTAATTAA
Found at i:10718740 original size:21 final size:19
Alignment explanation
Indices: 10718699--10718746 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
10718689 AAAAAAGTTA
* *
10718699 AAATATAAAAATATTTATT
1 AAATATAAAAAAATTAATT
10718718 AAATATGAAAAAAATTAATTT
1 AAATAT-AAAAAAATTAA-TT
10718739 AAAT-TAAA
1 AAATATAAA
10718747 TTAAAAATAC
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 9 0.36
20 10 0.40
21 6 0.24
ACGTcount: A:0.62, C:0.00, G:0.02, T:0.35
Consensus pattern (19 bp):
AAATATAAAAAAATTAATT
Found at i:10719452 original size:17 final size:17
Alignment explanation
Indices: 10719419--10719450 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
10719409 TTTTTAGTTT
10719419 GTTTTTTCAATTTTTTA
1 GTTTTTTCAATTTTTTA
10719436 GTTTTTT-AATTTTTT
1 GTTTTTTCAATTTTTT
10719451 TATTTAGATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.16, C:0.03, G:0.06, T:0.75
Consensus pattern (17 bp):
GTTTTTTCAATTTTTTA
Found at i:10720711 original size:14 final size:14
Alignment explanation
Indices: 10720688--10720729 Score: 61
Period size: 14 Copynumber: 3.1 Consensus size: 14
10720678 AAATAGTTAC
10720688 ATTT-TATTATTTA
1 ATTTATATTATTTA
10720701 ATTTATATTATTTA
1 ATTTATATTATTTA
10720715 ATTTATTATT-TTTA
1 ATTTA-TATTATTTA
10720729 A
1 A
10720730 AGAAATTTCA
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 4 0.15
14 19 0.70
15 4 0.15
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (14 bp):
ATTTATATTATTTA
Found at i:10722483 original size:46 final size:46
Alignment explanation
Indices: 10722403--10722497 Score: 147
Period size: 46 Copynumber: 2.1 Consensus size: 46
10722393 AGCAACAATG
*
10722403 TAAGTTGTTTAACAACTACACAAGTGGTCGTTTTGAAAATTCTCTA
1 TAAGTTGTTTAACAACTACACAAGTGGTCATTTTGAAAATTCTCTA
* *
10722449 TAAGTTGTTTAACAACTATACAA-TGGGTCATTTTGGAAATTCTCTA
1 TAAGTTGTTTAACAACTACACAAGT-GGTCATTTTGAAAATTCTCTA
10722495 TAA
1 TAA
10722498 TTTTTATACA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
45 1 0.02
46 44 0.98
ACGTcount: A:0.34, C:0.14, G:0.15, T:0.38
Consensus pattern (46 bp):
TAAGTTGTTTAACAACTACACAAGTGGTCATTTTGAAAATTCTCTA
Found at i:10725114 original size:17 final size:17
Alignment explanation
Indices: 10725092--10725146 Score: 56
Period size: 17 Copynumber: 3.1 Consensus size: 17
10725082 TTTAGACCAT
10725092 TGCAATTTTGAAATATA
1 TGCAATTTTGAAATATA
* *
10725109 TGCAATTATTGAAAATTTG
1 TGCAATT-TTG-AAATATA
* *
10725128 TGAAATTTTAAAATATA
1 TGCAATTTTGAAATATA
10725145 TG
1 TG
10725147 TATTTGTTGA
Statistics
Matches: 30, Mismatches: 6, Indels: 4
0.75 0.15 0.10
Matches are distributed among these distances:
17 14 0.47
18 5 0.17
19 11 0.37
ACGTcount: A:0.42, C:0.04, G:0.13, T:0.42
Consensus pattern (17 bp):
TGCAATTTTGAAATATA
Found at i:10725142 original size:36 final size:36
Alignment explanation
Indices: 10725095--10725166 Score: 99
Period size: 36 Copynumber: 2.0 Consensus size: 36
10725085 AGACCATTGC
*
10725095 AATTTTGAAATATATGCAATTATTGAAAATTTGTGA
1 AATTTTAAAATATATGCAATTATTGAAAATTTGTGA
* * * *
10725131 AATTTTAAAATATATGTATTTGTTGAATATTTGTGA
1 AATTTTAAAATATATGCAATTATTGAAAATTTGTGA
10725167 TTTTATTATA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.39, C:0.01, G:0.14, T:0.46
Consensus pattern (36 bp):
AATTTTAAAATATATGCAATTATTGAAAATTTGTGA
Found at i:10725720 original size:49 final size:51
Alignment explanation
Indices: 10725665--10725771 Score: 155
Period size: 50 Copynumber: 2.1 Consensus size: 51
10725655 AAAAAAATGA
**
10725665 TTTTTTTGAATTAAAAAAG-GATGCATTATGAATAATTATTTGATTATAT-
1 TTTTTTTGAATTAAAAAAGTGATGCATTATGAATAATTATTCAATTATATC
* * *
10725714 TTTTTTTGGATTAAAAATGTTATGCATTATGAATAATTATTCAATTATATC
1 TTTTTTTGAATTAAAAAAGTGATGCATTATGAATAATTATTCAATTATATC
10725765 TTTTTTT
1 TTTTTTT
10725772 AAAAAAATGT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
49 17 0.33
50 27 0.53
51 7 0.14
ACGTcount: A:0.35, C:0.04, G:0.10, T:0.51
Consensus pattern (51 bp):
TTTTTTTGAATTAAAAAAGTGATGCATTATGAATAATTATTCAATTATATC
Found at i:10727275 original size:16 final size:16
Alignment explanation
Indices: 10727254--10727284 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
10727244 TAGTACATGC
10727254 TTTGATATATGCTTAT
1 TTTGATATATGCTTAT
*
10727270 TTTGATATATTCTTA
1 TTTGATATATGCTTA
10727285 AAAGATATGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.26, C:0.06, G:0.10, T:0.58
Consensus pattern (16 bp):
TTTGATATATGCTTAT
Found at i:10728001 original size:2 final size:2
Alignment explanation
Indices: 10727994--10728018 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
10727984 AATATTTTAT
10727994 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
10728019 GAGCTATGGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:10731023 original size:25 final size:25
Alignment explanation
Indices: 10730995--10731045 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
10730985 GTACAAAGTA
10730995 TATGAAAAGT-ACTTTTCAAAATTAT
1 TATGAAAAGTGACTTTT-AAAATTAT
*
10731020 TATGAAAAGTGCCTTTTAAAATTAT
1 TATGAAAAGTGACTTTTAAAATTAT
10731045 T
1 T
10731046 TAAAAAGCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 19 0.79
26 5 0.21
ACGTcount: A:0.41, C:0.08, G:0.10, T:0.41
Consensus pattern (25 bp):
TATGAAAAGTGACTTTTAAAATTAT
Found at i:10731055 original size:22 final size:26
Alignment explanation
Indices: 10731006--10731056 Score: 65
Period size: 25 Copynumber: 2.1 Consensus size: 26
10730996 ATGAAAAGTA
*
10731006 CTTTTCAAAATTATTATGAAAAGTGC
1 CTTTTCAAAATTATTATGAAAAGAGC
10731032 CTTTT-AAAATTATT-T-AAAA-AGC
1 CTTTTCAAAATTATTATGAAAAGAGC
10731054 CTT
1 CTT
10731057 GGGATTATAC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
22 5 0.21
23 4 0.17
24 1 0.04
25 9 0.38
26 5 0.21
ACGTcount: A:0.39, C:0.12, G:0.08, T:0.41
Consensus pattern (26 bp):
CTTTTCAAAATTATTATGAAAAGAGC
Found at i:10733499 original size:18 final size:18
Alignment explanation
Indices: 10733476--10733514 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
10733466 CATGATATGA
*
10733476 ATGACAAATTATGAATAC
1 ATGACAAATTAAGAATAC
*
10733494 ATGACAATTTAAGAATAC
1 ATGACAAATTAAGAATAC
10733512 ATG
1 ATG
10733515 TAATGAAGTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.49, C:0.10, G:0.13, T:0.28
Consensus pattern (18 bp):
ATGACAAATTAAGAATAC
Found at i:10733619 original size:19 final size:19
Alignment explanation
Indices: 10733603--10733639 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
10733593 GTATTTAGAG
10733603 TTTAAAAAGTGATTTAGGA
1 TTTAAAAAGTGATTTAGGA
* *
10733622 TTTAAAGAGTGGTTTAGG
1 TTTAAAAAGTGATTTAGG
10733640 GTTGAGGAGG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.35, C:0.00, G:0.27, T:0.38
Consensus pattern (19 bp):
TTTAAAAAGTGATTTAGGA
Found at i:10733652 original size:19 final size:19
Alignment explanation
Indices: 10733630--10733703 Score: 96
Period size: 19 Copynumber: 3.9 Consensus size: 19
10733620 GATTTAAAGA
10733630 GTGGTTTAGGG-TTGAGGAG
1 GTGGTTTAGGGTTTG-GGAG
* *
10733649 GTGGTTTAGGGTTTGGAAA
1 GTGGTTTAGGGTTTGGGAG
*
10733668 GTGATTTAGGGTTTGGGAG
1 GTGGTTTAGGGTTTGGGAG
*
10733687 GTGGTTTATGGTTTGGG
1 GTGGTTTAGGGTTTGGG
10733704 TAATGGTTTA
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
19 44 0.94
20 3 0.06
ACGTcount: A:0.15, C:0.00, G:0.47, T:0.38
Consensus pattern (19 bp):
GTGGTTTAGGGTTTGGGAG
Found at i:10733657 original size:38 final size:38
Alignment explanation
Indices: 10733615--10733694 Score: 101
Period size: 38 Copynumber: 2.1 Consensus size: 38
10733605 TAAAAAGTGA
*
10733615 TTTAGGATTT-AAAGAGTGGTTTAGGG-TTGAGGAGGTGG
1 TTTAGGATTTGAAA-AGTGATTTAGGGTTTG-GGAGGTGG
* *
10733653 TTTAGGGTTTGGAAAGTGATTTAGGGTTTGGGAGGTGG
1 TTTAGGATTTGAAAAGTGATTTAGGGTTTGGGAGGTGG
10733691 TTTA
1 TTTA
10733695 TGGTTTGGGT
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
38 32 0.86
39 5 0.14
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (38 bp):
TTTAGGATTTGAAAAGTGATTTAGGGTTTGGGAGGTGG
Found at i:10733700 original size:38 final size:38
Alignment explanation
Indices: 10733629--10733702 Score: 114
Period size: 38 Copynumber: 1.9 Consensus size: 38
10733619 GGATTTAAAG
*
10733629 AGTGGTTTAGGGTTGAGGAGGTGGTTTAGGGTTTGGAA
1 AGTGATTTAGGGTTGAGGAGGTGGTTTAGGGTTTGGAA
*
10733667 AGTGATTTAGGGTTTG-GGAGGTGGTTTATGGTTTGG
1 AGTGATTTAGGG-TTGAGGAGGTGGTTTAGGGTTTGG
10733703 GTAATGGTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
38 30 0.91
39 3 0.09
ACGTcount: A:0.16, C:0.00, G:0.46, T:0.38
Consensus pattern (38 bp):
AGTGATTTAGGGTTGAGGAGGTGGTTTAGGGTTTGGAA
Found at i:10733719 original size:38 final size:38
Alignment explanation
Indices: 10733629--10733719 Score: 105
Period size: 38 Copynumber: 2.4 Consensus size: 38
10733619 GGATTTAAAG
*
10733629 AGTGGTTTAGGGTTGAGGAGGTGGTTTAGGGTTTGGAA
1 AGTGGTTTAGGTTTGAGGAGGTGGTTTAGGGTTTGGAA
* * *
10733667 AGTGATTTAGGGTTTG-GGAGGTGGTTTATGGTTTGGGTA
1 AGTGGTTTA-GGTTTGAGGAGGTGGTTTAGGGTTT-GGAA
10733706 A-TGGTTTATGGTTT
1 AGTGGTTTA-GGTTT
10733720 AGGGTTTAAA
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
38 36 0.80
39 9 0.20
ACGTcount: A:0.16, C:0.00, G:0.43, T:0.41
Consensus pattern (38 bp):
AGTGGTTTAGGTTTGAGGAGGTGGTTTAGGGTTTGGAA
Found at i:10733746 original size:7 final size:7
Alignment explanation
Indices: 10733736--10733807 Score: 53
Period size: 7 Copynumber: 10.4 Consensus size: 7
10733726 TAAAAGATGA
10733736 TTTAAGG
1 TTTAAGG
10733743 TTT-AGG
1 TTTAAGG
*
10733749 TATTAGGG
1 T-TTAAGG
10733757 TTT-AGAG
1 TTTAAG-G
10733764 TTTATA-G
1 TTTA-AGG
*
10733771 TTTAGGG
1 TTTAAGG
10733778 TTTAAGG
1 TTTAAGG
*
10733785 TTTAA-A
1 TTTAAGG
10733791 TTTAAGG
1 TTTAAGG
*
10733798 TTTAGGG
1 TTTAAGG
10733805 TTT
1 TTT
10733808 CAAATTTAGG
Statistics
Matches: 51, Mismatches: 7, Indels: 14
0.71 0.10 0.19
Matches are distributed among these distances:
6 10 0.20
7 37 0.73
8 3 0.06
9 1 0.02
ACGTcount: A:0.25, C:0.00, G:0.28, T:0.47
Consensus pattern (7 bp):
TTTAAGG
Found at i:10733766 original size:21 final size:21
Alignment explanation
Indices: 10733751--10733821 Score: 67
Period size: 21 Copynumber: 3.4 Consensus size: 21
10733741 GGTTTAGGTA
10733751 TTAGGGTTTAGAGTTTATAGT
1 TTAGGGTTTAGAGTTTATAGT
*
10733772 TTAGGGTTTA-AGGTTTA-AAT
1 TTAGGGTTTAGA-GTTTATAGT
* * *
10733792 TTAAGGTTTAGGGTTTCA-AAT
1 TTAGGGTTTAGAGTTT-ATAGT
10733813 TTAGGGTTT
1 TTAGGGTTT
10733822 CATAGAAATT
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
20 16 0.37
21 27 0.63
ACGTcount: A:0.25, C:0.01, G:0.27, T:0.46
Consensus pattern (21 bp):
TTAGGGTTTAGAGTTTATAGT
Found at i:10733787 original size:14 final size:14
Alignment explanation
Indices: 10733736--10733821 Score: 72
Period size: 14 Copynumber: 6.2 Consensus size: 14
10733726 TAAAAGATGA
10733736 TTTAAGGTTTA-GG
1 TTTAAGGTTTAGGG
* *
10733749 TATTAGGGTTTAGAG
1 T-TTAAGGTTTAGGG
10733764 TTTATA-GTTTAGGG
1 TTTA-AGGTTTAGGG
**
10733778 TTTAAGGTTTA-AA
1 TTTAAGGTTTAGGG
10733791 TTTAAGGTTTAGGG
1 TTTAAGGTTTAGGG
*
10733805 TTTCAA-ATTTAGGG
1 TTT-AAGGTTTAGGG
10733819 TTT
1 TTT
10733822 CATAGAAATT
Statistics
Matches: 58, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
13 13 0.22
14 41 0.71
15 4 0.07
ACGTcount: A:0.26, C:0.01, G:0.27, T:0.47
Consensus pattern (14 bp):
TTTAAGGTTTAGGG
Found at i:10733799 original size:20 final size:21
Alignment explanation
Indices: 10733771--10733821 Score: 77
Period size: 20 Copynumber: 2.5 Consensus size: 21
10733761 GAGTTTATAG
10733771 TTTAGGGTTTAAGGTTT-AAA
1 TTTAGGGTTTAAGGTTTCAAA
* *
10733791 TTTAAGGTTTAGGGTTTCAAA
1 TTTAGGGTTTAAGGTTTCAAA
10733812 TTTAGGGTTT
1 TTTAGGGTTT
10733822 CATAGAAATT
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
20 15 0.56
21 12 0.44
ACGTcount: A:0.25, C:0.02, G:0.25, T:0.47
Consensus pattern (21 bp):
TTTAGGGTTTAAGGTTTCAAA
Found at i:10736006 original size:18 final size:18
Alignment explanation
Indices: 10735964--10736007 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
10735954 CTCTAATTTT
* *
10735964 GATTTTAAAAACATGTTA
1 GATTTAAAAAAAATGTTA
* *
10735982 AAATTAAAAAAAATGTTA
1 GATTTAAAAAAAATGTTA
10736000 GATTTAAA
1 GATTTAAA
10736008 TCAAATTAGA
Statistics
Matches: 20, Mismatches: 6, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.55, C:0.02, G:0.09, T:0.34
Consensus pattern (18 bp):
GATTTAAAAAAAATGTTA
Found at i:10742478 original size:23 final size:22
Alignment explanation
Indices: 10742451--10742517 Score: 66
Period size: 23 Copynumber: 2.9 Consensus size: 22
10742441 ATATTGAATA
10742451 ATAATTT-TAT-TAATATAATATAT
1 ATAATTTATATATAAT-TAA-A-AT
10742474 ATAATTATATATATAATTAAAAT
1 ATAATT-TATATATAATTAAAAT
*
10742497 ATAATTTAATATATATTTAAA
1 ATAATTT-ATATATAATTAAA
10742518 GCATGATGTA
Statistics
Matches: 39, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
22 1 0.03
23 26 0.67
24 2 0.05
25 6 0.15
26 4 0.10
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (22 bp):
ATAATTTATATATAATTAAAAT
Found at i:10742483 original size:12 final size:12
Alignment explanation
Indices: 10742468--10742511 Score: 56
Period size: 12 Copynumber: 3.8 Consensus size: 12
10742458 TATTAATATA
10742468 ATATATATAATT
1 ATATATATAATT
10742480 ATATATATAATT
1 ATATATATAATT
*
10742492 A-AAATATAATT
1 ATATATATAATT
10742503 -TAATATATA
1 AT-ATATATA
10742512 TTTAAAGCAT
Statistics
Matches: 28, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
11 9 0.32
12 19 0.68
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (12 bp):
ATATATATAATT
Found at i:10743412 original size:13 final size:13
Alignment explanation
Indices: 10743372--10743434 Score: 56
Period size: 13 Copynumber: 4.9 Consensus size: 13
10743362 TTATTAAATA
*
10743372 AAAAAAGAAAAAT
1 AAAAAAGAAAAAG
** *
10743385 AAAAACTAAATAG
1 AAAAAAGAAAAAG
*
10743398 AAAAAAGAAAGAG
1 AAAAAAGAAAAAG
* *
10743411 -AAAAGGAAAAAC
1 AAAAAAGAAAAAG
10743423 AAAAAAGAAAAA
1 AAAAAAGAAAAA
10743435 ATCATGGGAT
Statistics
Matches: 38, Mismatches: 11, Indels: 2
0.75 0.22 0.04
Matches are distributed among these distances:
12 9 0.24
13 29 0.76
ACGTcount: A:0.79, C:0.03, G:0.13, T:0.05
Consensus pattern (13 bp):
AAAAAAGAAAAAG
Found at i:10743544 original size:29 final size:29
Alignment explanation
Indices: 10743511--10743567 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
10743501 ATTAAGTATA
*
10743511 AAAAGA-AAAACT-AAATAAAAAAAGAAATG
1 AAAAGATAAAA-TGAAAGAAAAAAA-AAATG
10743540 AAAAGATAAAATGAAAGAAAAAAAAAAT
1 AAAAGATAAAATGAAAGAAAAAAAAAAT
10743568 CAAGGGGTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.77, C:0.02, G:0.11, T:0.11
Consensus pattern (29 bp):
AAAAGATAAAATGAAAGAAAAAAAAAATG
Found at i:10745280 original size:15 final size:17
Alignment explanation
Indices: 10745260--10745310 Score: 56
Period size: 17 Copynumber: 3.2 Consensus size: 17
10745250 AATTTCTTAG
10745260 AATTTTATCATAT-ATT
1 AATTTTATCATATAATT
*
10745276 --TTTT-TAATATAATT
1 AATTTTATCATATAATT
*
10745290 AATTTTATCATATTATT
1 AATTTTATCATATAATT
10745307 AATT
1 AATT
10745311 AAATTTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
13 5 0.18
14 7 0.25
16 4 0.14
17 12 0.43
ACGTcount: A:0.37, C:0.04, G:0.00, T:0.59
Consensus pattern (17 bp):
AATTTTATCATATAATT
Found at i:10745393 original size:24 final size:24
Alignment explanation
Indices: 10745362--10745417 Score: 71
Period size: 25 Copynumber: 2.3 Consensus size: 24
10745352 ATATTTTAAA
10745362 AAATTTTTCAATCT-TAATTATAAT
1 AAATTTTTCAAT-TATAATTATAAT
*
10745386 AAATTTTTTTAATTATAATTATAAT
1 AAA-TTTTTCAATTATAATTATAAT
10745411 -AATTTTT
1 AAATTTTT
10745418 ATTATTATTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
23 5 0.17
24 6 0.21
25 18 0.62
ACGTcount: A:0.41, C:0.04, G:0.00, T:0.55
Consensus pattern (24 bp):
AAATTTTTCAATTATAATTATAAT
Found at i:10745404 original size:25 final size:24
Alignment explanation
Indices: 10745376--10745425 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 24
10745366 TTTTCAATCT
10745376 TAATTATAATAAATTTTT-TTAATTA
1 TAATTATAAT-AATTTTTATT-ATTA
10745401 TAATTATAATAATTTTTATTATTA
1 TAATTATAATAATTTTTATTATTA
10745425 T
1 T
10745426 TTTTAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 12 0.50
25 12 0.50
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (24 bp):
TAATTATAATAATTTTTATTATTA
Found at i:10745753 original size:58 final size:56
Alignment explanation
Indices: 10745673--10745781 Score: 139
Period size: 58 Copynumber: 1.9 Consensus size: 56
10745663 AAATTAGCCC
* *
10745673 CTTATAAATATCAAATTATTATAATGCCCTTTATATCTTAAATGATAAAAATACCTTT
1 CTTATAAATATCAAATTATTATAATACCC-TTATATCAT-AATGATAAAAATACCTTT
* * *
10745731 CTTATAAATAATGAAA-TATTATAATACTCTTATATCATAATTATAAAAATA
1 CTTATAAAT-ATCAAATTATTATAATACCCTTATATCATAATGATAAAAATA
10745782 TCATTTATCA
Statistics
Matches: 45, Mismatches: 5, Indels: 4
0.83 0.09 0.07
Matches are distributed among these distances:
56 12 0.27
57 8 0.18
58 20 0.44
59 5 0.11
ACGTcount: A:0.46, C:0.11, G:0.03, T:0.40
Consensus pattern (56 bp):
CTTATAAATATCAAATTATTATAATACCCTTATATCATAATGATAAAAATACCTTT
Found at i:10746657 original size:61 final size:61
Alignment explanation
Indices: 10746590--10746727 Score: 181
Period size: 61 Copynumber: 2.3 Consensus size: 61
10746580 ATAATCAACT
* *
10746590 AAAATTATTATAATATTTCTCTT-ACCATAATTATTAAAATACTCTTC-TACCATAATTAATC
1 AAAATTATTATAATACTTCT-TTAACCATAATTATGAAAATACT-TTCTTACCATAATTAATC
* * ** *
10746651 AAAATTATTATAATACTTCTTTAACCATAATTATGAAAATACTTTCTTACTATTATTGGTT
1 AAAATTATTATAATACTTCTTTAACCATAATTATGAAAATACTTTCTTACCATAATTAATC
10746712 AAAATTATTATAATAC
1 AAAATTATTATAATAC
10746728 CCTTTTTATC
Statistics
Matches: 68, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
60 5 0.07
61 63 0.93
ACGTcount: A:0.41, C:0.13, G:0.02, T:0.43
Consensus pattern (61 bp):
AAAATTATTATAATACTTCTTTAACCATAATTATGAAAATACTTTCTTACCATAATTAATC
Found at i:10746674 original size:26 final size:26
Alignment explanation
Indices: 10746645--10746694 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
10746635 TCTACCATAA
* * *
10746645 TTAATCAAAATTATTATAATACTTCT
1 TTAACCAAAATTATGAAAATACTTCT
*
10746671 TTAACCATAATTATGAAAATACTT
1 TTAACCAAAATTATGAAAATACTT
10746695 TCTTACTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.44, C:0.12, G:0.02, T:0.42
Consensus pattern (26 bp):
TTAACCAAAATTATGAAAATACTTCT
Found at i:10747457 original size:27 final size:27
Alignment explanation
Indices: 10747427--10747478 Score: 70
Period size: 27 Copynumber: 1.9 Consensus size: 27
10747417 CTAAAATTTT
*
10747427 ATAATTTT-TAATATTAAAAAATAAAAA
1 ATAATTTTAAAATA-TAAAAAATAAAAA
*
10747454 ATAATTTTAAAATATAAAAACTAAA
1 ATAATTTTAAAATATAAAAAATAAA
10747479 GAATTTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
27 18 0.82
28 4 0.18
ACGTcount: A:0.63, C:0.02, G:0.00, T:0.35
Consensus pattern (27 bp):
ATAATTTTAAAATATAAAAAATAAAAA
Found at i:10747458 original size:20 final size:20
Alignment explanation
Indices: 10747435--10747473 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
10747425 TTATAATTTT
10747435 TAATATTAAAAAATAAAAAA
1 TAATATTAAAAAATAAAAAA
* *
10747455 TAATTTTAAAATATAAAAA
1 TAATATTAAAAAATAAAAA
10747474 CTAAAGAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (20 bp):
TAATATTAAAAAATAAAAAA
Found at i:10752468 original size:17 final size:17
Alignment explanation
Indices: 10752448--10752482 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
10752438 ATTTTTAAAT
*
10752448 AATACTTATACATATAA
1 AATACTTATACAAATAA
10752465 AATACTTATACAAATAA
1 AATACTTATACAAATAA
10752482 A
1 A
10752483 TTTACTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.31
Consensus pattern (17 bp):
AATACTTATACAAATAA
Found at i:10760874 original size:7 final size:7
Alignment explanation
Indices: 10760862--10760891 Score: 60
Period size: 7 Copynumber: 4.3 Consensus size: 7
10760852 TACACCTCTC
10760862 ACTTCTT
1 ACTTCTT
10760869 ACTTCTT
1 ACTTCTT
10760876 ACTTCTT
1 ACTTCTT
10760883 ACTTCTT
1 ACTTCTT
10760890 AC
1 AC
10760892 GTACACGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 23 1.00
ACGTcount: A:0.17, C:0.30, G:0.00, T:0.53
Consensus pattern (7 bp):
ACTTCTT
Found at i:10761855 original size:14 final size:15
Alignment explanation
Indices: 10761830--10761861 Score: 57
Period size: 14 Copynumber: 2.2 Consensus size: 15
10761820 TTCATGCTTC
10761830 CTTCACCTGCATCGG
1 CTTCACCTGCATCGG
10761845 CTTCA-CTGCATCGG
1 CTTCACCTGCATCGG
10761859 CTT
1 CTT
10761862 TTGTCTCCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 12 0.71
15 5 0.29
ACGTcount: A:0.12, C:0.38, G:0.19, T:0.31
Consensus pattern (15 bp):
CTTCACCTGCATCGG
Found at i:10777547 original size:25 final size:25
Alignment explanation
Indices: 10777513--10777562 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
10777503 AAATAAGAAG
10777513 CTAAAATGATGTTTCAAGTTATGAC
1 CTAAAATGATGTTTCAAGTTATGAC
*
10777538 CTAAAATGATGTTTCGAGTTATGAC
1 CTAAAATGATGTTTCAAGTTATGAC
10777563 AATAACATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.34, C:0.12, G:0.18, T:0.36
Consensus pattern (25 bp):
CTAAAATGATGTTTCAAGTTATGAC
Found at i:10784932 original size:2 final size:2
Alignment explanation
Indices: 10784927--10784963 Score: 74
Period size: 2 Copynumber: 18.5 Consensus size: 2
10784917 TCTCTCTGTG
10784927 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
10784964 CGATTAGAAA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 35 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:10786081 original size:30 final size:30
Alignment explanation
Indices: 10785993--10786087 Score: 90
Period size: 30 Copynumber: 3.2 Consensus size: 30
10785983 AATTTGATTG
* *
10785993 ATAATTAAATATAAATATT-TTTCATATTTTA
1 ATAATT-AATATAAGTATTATTT-TTATTTTA
* *
10786024 ACAA-TAA-ATAATGT-TATATTATTATTTTA
1 ATAATTAATATAA-GTAT-TATTTTTATTTTA
10786053 ATAATTAATATAAGTATTATTTTTATTTTA
1 ATAATTAATATAAGTATTATTTTTATTTTA
10786083 ATAAT
1 ATAAT
10786088 AATGAATATT
Statistics
Matches: 52, Mismatches: 6, Indels: 13
0.73 0.08 0.18
Matches are distributed among these distances:
28 5 0.10
29 14 0.27
30 25 0.48
31 8 0.15
ACGTcount: A:0.44, C:0.02, G:0.02, T:0.52
Consensus pattern (30 bp):
ATAATTAATATAAGTATTATTTTTATTTTA
Found at i:10786328 original size:24 final size:22
Alignment explanation
Indices: 10786301--10786356 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 22
10786291 AACATTAATA
*
10786301 TATTAATAGTATAAATATTTTTAT
1 TATTAATA--ATAAATATTATTAT
10786325 TATTTTAATAATAAATATTATTAT
1 TA--TTAATAATAAATATTATTAT
*
10786349 TTTTAATA
1 TATTAATA
10786357 TTTTATTTTA
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
22 6 0.21
24 16 0.57
26 6 0.21
ACGTcount: A:0.43, C:0.00, G:0.02, T:0.55
Consensus pattern (22 bp):
TATTAATAATAAATATTATTAT
Found at i:10786414 original size:22 final size:22
Alignment explanation
Indices: 10786389--10786430 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10786379 TTTTAATAGT
*
10786389 AATACTATTATAAATATTTTAA
1 AATACTAATATAAATATTTTAA
* *
10786411 AATATTAATATAATTATTTT
1 AATACTAATATAAATATTTT
10786431 TTAATAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.48, C:0.02, G:0.00, T:0.50
Consensus pattern (22 bp):
AATACTAATATAAATATTTTAA
Found at i:10786436 original size:22 final size:22
Alignment explanation
Indices: 10786388--10786445 Score: 55
Period size: 22 Copynumber: 2.7 Consensus size: 22
10786378 ATTTTAATAG
* * *
10786388 TAATACTATTATAAATATTTTA
1 TAATAATAATATAATTATTTTA
* * *
10786410 AAATATTAATATAATTATTTTT
1 TAATAATAATATAATTATTTTA
10786432 TAATAATAA-ATAAT
1 TAATAATAATATAAT
10786446 ATTGTCTTAA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 5 0.17
22 24 0.83
ACGTcount: A:0.50, C:0.02, G:0.00, T:0.48
Consensus pattern (22 bp):
TAATAATAATATAATTATTTTA
Found at i:10790344 original size:19 final size:21
Alignment explanation
Indices: 10790323--10790367 Score: 76
Period size: 19 Copynumber: 2.2 Consensus size: 21
10790313 TTCGAAATTA
10790323 ATAAAATATTATTTTTTTAAT
1 ATAAAATATTATTTTTTTAAT
10790344 ATAAAATATTA--TTTTTAAT
1 ATAAAATATTATTTTTTTAAT
10790363 ATAAA
1 ATAAA
10790368 TATAAATTTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 13 0.54
21 11 0.46
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (21 bp):
ATAAAATATTATTTTTTTAAT
Found at i:10790349 original size:21 final size:19
Alignment explanation
Indices: 10790323--10790381 Score: 75
Period size: 18 Copynumber: 3.1 Consensus size: 19
10790313 TTCGAAATTA
10790323 ATAAAATATTATTTTTTTAAT
1 ATAAAATATTA--TTTTTAAT
10790344 ATAAAATATTATTTTTAAT
1 ATAAAATATTATTTTTAAT
* *
10790363 AT-AAATATAAATTTTAAT
1 ATAAAATATTATTTTTAAT
10790381 A
1 A
10790382 AATATATAAT
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 15 0.42
19 10 0.28
21 11 0.31
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (19 bp):
ATAAAATATTATTTTTAAT
Found at i:10790388 original size:18 final size:18
Alignment explanation
Indices: 10790337--10790390 Score: 65
Period size: 18 Copynumber: 2.9 Consensus size: 18
10790327 AATATTATTT
* *
10790337 TTTTAATATAAAATATTAT
1 TTTTAATAT-AAATATAAA
10790356 TTTTAATATAAATATAAA
1 TTTTAATATAAATATAAA
10790374 TTTTAATA-AATATATAA
1 TTTTAATATAA-ATATAA
10790391 TTAAAAAATA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
17 2 0.06
18 21 0.66
19 9 0.28
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (18 bp):
TTTTAATATAAATATAAA
Found at i:10804836 original size:27 final size:24
Alignment explanation
Indices: 10804780--10804833 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 24
10804770 TTATTTATTA
10804780 ATTTATTATATAATAAACAAAATT
1 ATTTATTATATAATAAACAAAATT
* *
10804804 ATTTATTATAATAAATTAATAAAATT
1 ATTTATTAT-AT-AATAAACAAAATT
10804830 ATTT
1 ATTT
10804834 TATAATTTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
24 9 0.35
25 2 0.08
26 15 0.58
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.46
Consensus pattern (24 bp):
ATTTATTATATAATAAACAAAATT
Found at i:10806087 original size:103 final size:103
Alignment explanation
Indices: 10805942--10806263 Score: 421
Period size: 103 Copynumber: 3.1 Consensus size: 103
10805932 TTATTGTTAT
* * * *
10805942 TTAAACT-TTTTCAATAATCATAAAATATTGGTCATAAAAACTCTTAAGTAACCATATTCTTATA
1 TTAAACTATTTTCAATAACCATTAAATATTGGTCATAAAAACTCTTAAGTAACCATATTATTATG
* * * *
10806006 GTTACATAACATGTTTCATTATAATTAAATATCGTTTG
66 GTTACATAACATATTTCATTATGATTAAATGTTGTTTG
* * ** *
10806044 TTAAACTATTTTCAGTAACCATTAAATATTAGTTGTAAAAACTCCTAAGTAACCATATTATTATG
1 TTAAACTATTTTCAATAACCATTAAATATTGGTCATAAAAACTCTTAAGTAACCATATTATTATG
* * *
10806109 GTTATATAACATATTTCATTACGATTAAATGTTGTTTA
66 GTTACATAACATATTTCATTATGATTAAATGTTGTTTG
* * *
10806147 TTAAACTATTTTCAACAACCATTAAATATTGGTCATAAAAACTCTTAAGTAACCATATTAATGTG
1 TTAAACTATTTTCAATAACCATTAAATATTGGTCATAAAAACTCTTAAGTAACCATATTATTATG
* ** *
10806212 GTTACATAATATATTTTGTTATGATTAAATGTTATTTG
66 GTTACATAACATATTTCATTATGATTAAATGTTGTTTG
*
10806250 TTAAGCTATTTTCA
1 TTAAACTATTTTCA
10806264 GTAATCATAT
Statistics
Matches: 187, Mismatches: 32, Indels: 1
0.85 0.15 0.00
Matches are distributed among these distances:
102 7 0.04
103 180 0.96
ACGTcount: A:0.38, C:0.12, G:0.08, T:0.42
Consensus pattern (103 bp):
TTAAACTATTTTCAATAACCATTAAATATTGGTCATAAAAACTCTTAAGTAACCATATTATTATG
GTTACATAACATATTTCATTATGATTAAATGTTGTTTG
Found at i:10818595 original size:18 final size:18
Alignment explanation
Indices: 10818572--10818643 Score: 67
Period size: 19 Copynumber: 3.9 Consensus size: 18
10818562 TTAATTATAT
10818572 ATTTATATATT-TATTAAA
1 ATTTATAT-TTATATTAAA
10818590 ATTTATATTTATATTAAAA
1 ATTTATATTTATATT-AAA
* *
10818609 AATAATATTTTATATTAAA
1 ATTTATA-TTTATATTAAA
* *
10818628 AATAATATTT-TATTAA
1 ATTTATATTTATATTAA
10818644 TTTTGAATCT
Statistics
Matches: 49, Mismatches: 2, Indels: 7
0.84 0.03 0.12
Matches are distributed among these distances:
17 8 0.16
18 15 0.31
19 18 0.37
20 8 0.16
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (18 bp):
ATTTATATTTATATTAAA
Found at i:10818620 original size:20 final size:19
Alignment explanation
Indices: 10818583--10818640 Score: 82
Period size: 19 Copynumber: 3.1 Consensus size: 19
10818573 TTTATATATT
* *
10818583 TATTAAAATTTATA-TTTA
1 TATTAAAAATAATATTTTA
10818601 TATTAAAAAATAATATTTTA
1 TATT-AAAAATAATATTTTA
10818621 TATTAAAAATAATATTTTA
1 TATTAAAAATAATATTTTA
10818640 T
1 T
10818641 TAATTTTGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
18 4 0.11
19 24 0.67
20 8 0.22
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (19 bp):
TATTAAAAATAATATTTTA
Found at i:10822104 original size:14 final size:13
Alignment explanation
Indices: 10822080--10822118 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
10822070 AATGATATAC
10822080 TTTAAAATAAATT
1 TTTAAAATAAATT
10822093 TTTAAAATTAAATT
1 TTTAAAA-TAAATT
* *
10822107 ATAAAAATAAAT
1 TTTAAAATAAAT
10822119 AATAAATAAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
13 12 0.52
14 11 0.48
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (13 bp):
TTTAAAATAAATT
Found at i:10822166 original size:2 final size:2
Alignment explanation
Indices: 10822159--10822190 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
10822149 TGGGAGGACT
10822159 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
10822191 GGTTATCAAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:10822660 original size:22 final size:22
Alignment explanation
Indices: 10822619--10822660 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
10822609 TTATTATTAA
*
10822619 AAAATAATTATATTAATATTTT
1 AAAATAATTATAATAATATTTT
* *
10822641 AAAATATTTATAATAGTATT
1 AAAATAATTATAATAATATT
10822661 ACTATTAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.50, C:0.00, G:0.02, T:0.48
Consensus pattern (22 bp):
AAAATAATTATAATAATATTTT
Found at i:10822733 original size:24 final size:22
Alignment explanation
Indices: 10822693--10822738 Score: 65
Period size: 24 Copynumber: 2.0 Consensus size: 22
10822683 TAAAATAAAA
*
10822693 TATTAAAAATAATAATATTTAT
1 TATTAAAAATAAAAATATTTAT
10822715 TATTAAAATAATAAAAATATTTAT
1 TATT-AAA-AATAAAAATATTTAT
10822739 ACTATTAATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
22 4 0.19
23 3 0.14
24 14 0.67
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
TATTAAAAATAAAAATATTTAT
Found at i:10822748 original size:24 final size:22
Alignment explanation
Indices: 10822693--10822748 Score: 58
Period size: 24 Copynumber: 2.4 Consensus size: 22
10822683 TAAAATAAAA
* *
10822693 TATTAAAAATAATAATATTTAT
1 TATTAATAATAAAAATATTTAT
10822715 TATTAAAATAATAAAAATATTTAT
1 TATT--AATAATAAAAATATTTAT
10822739 ACTATTAATA
1 --TATTAATA
10822749 TATTAATGTT
Statistics
Matches: 28, Mismatches: 2, Indels: 6
0.78 0.06 0.17
Matches are distributed among these distances:
22 4 0.14
24 20 0.71
26 4 0.14
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (22 bp):
TATTAATAATAAAAATATTTAT
Found at i:10822998 original size:30 final size:29
Alignment explanation
Indices: 10822948--10823055 Score: 91
Period size: 28 Copynumber: 3.7 Consensus size: 29
10822938 TTGTTATATG
*
10822948 AAATAATATT-CATT-ATTATTAAAATAA
1 AAATAATATTATATTAATTATTAAAATAA
10822975 AAATAATACTTATATTAATTATTAAAATAA
1 AAATAATA-TTATATTAATTATTAAAATAA
* * * *
10823005 TATATAACATTAT-TT-ATTGTTAAAATATG
1 -AAATAATATTATATTAATTATTAAAATA-A
10823034 AAA-AATATTTATATTTAATTAT
1 AAATAATA-TTATA-TTAATTAT
10823056 CAATCAANNN
Statistics
Matches: 64, Mismatches: 8, Indels: 14
0.74 0.09 0.16
Matches are distributed among these distances:
27 11 0.17
28 19 0.30
29 5 0.08
30 19 0.30
31 10 0.16
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (29 bp):
AAATAATATTATATTAATTATTAAAATAA
Found at i:10833472 original size:21 final size:20
Alignment explanation
Indices: 10833425--10833472 Score: 53
Period size: 20 Copynumber: 2.4 Consensus size: 20
10833415 TTTTAAGTCT
*
10833425 ATTTTGATGCTGTATTCATA
1 ATTTTCATGCTGTATTCATA
*
10833445 GTTTTCATGCTGTATGT-ATAA
1 ATTTTCATGCTGTAT-TCAT-A
10833466 ATTTTCA
1 ATTTTCA
10833473 GTTTTGGCTA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
20 15 0.65
21 8 0.35
ACGTcount: A:0.25, C:0.10, G:0.15, T:0.50
Consensus pattern (20 bp):
ATTTTCATGCTGTATTCATA
Found at i:10836061 original size:16 final size:16
Alignment explanation
Indices: 10836035--10836080 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
10836025 ATTTATTAAC
* *
10836035 AAAAATTAAAAAAGGA
1 AAAAATAAAAAAAGCA
*
10836051 CAAAATAAAAAAAGCA
1 AAAAATAAAAAAAGCA
10836067 AAAAATGAAAAAAA
1 AAAAAT-AAAAAAA
10836081 AAGTTTATAA
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
16 18 0.72
17 7 0.28
ACGTcount: A:0.78, C:0.04, G:0.09, T:0.09
Consensus pattern (16 bp):
AAAAATAAAAAAAGCA
Found at i:10843679 original size:3 final size:3
Alignment explanation
Indices: 10843667--10843702 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
10843657 AAAAAAAATA
*
10843667 AAT AAA AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
10843703 GGTACAATGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:10843679 original size:9 final size:9
Alignment explanation
Indices: 10843660--10843698 Score: 51
Period size: 9 Copynumber: 4.2 Consensus size: 9
10843650 ATTAGAAAAA
10843660 AAAAATAAAT
1 AAAAAT-AAT
10843670 AAAAATAAT
1 AAAAATAAT
*
10843679 AATAATAAT
1 AAAAATAAT
*
10843688 AATAATAAT
1 AAAAATAAT
10843697 AA
1 AA
10843699 TAATGGTACA
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
9 22 0.79
10 6 0.21
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (9 bp):
AAAAATAAT
Found at i:10847171 original size:28 final size:32
Alignment explanation
Indices: 10847108--10847180 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
10847098 TCATAATAAG
**
10847108 ATAAAATTTATTTGCTTTACTTATTATGATGG
1 ATAAAATTTATTTGCTTTACTTATTATGATCA
10847140 ATAAAATTTATTTGCTTTA-TTATT-T-A-CA
1 ATAAAATTTATTTGCTTTACTTATTATGATCA
*
10847168 ATAAAGTTTATTT
1 ATAAAATTTATTT
10847181 TATACAAAAT
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
28 12 0.32
29 1 0.03
30 1 0.03
31 5 0.13
32 19 0.50
ACGTcount: A:0.34, C:0.05, G:0.08, T:0.52
Consensus pattern (32 bp):
ATAAAATTTATTTGCTTTACTTATTATGATCA
Found at i:10847275 original size:9 final size:9
Alignment explanation
Indices: 10847252--10847288 Score: 56
Period size: 9 Copynumber: 4.0 Consensus size: 9
10847242 AAATGACTCA
10847252 TAAATTAAT
1 TAAATTAAT
10847261 TAAAATTAAT
1 T-AAATTAAT
*
10847271 TAAATTAGT
1 TAAATTAAT
10847280 TAAATTAAT
1 TAAATTAAT
10847289 AATTTATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
9 16 0.64
10 9 0.36
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (9 bp):
TAAATTAAT
Found at i:10851437 original size:24 final size:23
Alignment explanation
Indices: 10851410--10851461 Score: 61
Period size: 22 Copynumber: 2.3 Consensus size: 23
10851400 AAAACTAACA
*
10851410 ACTCTCCTTTATTATATTGCCACT
1 ACTCT-CTCTATTATATTGCCACT
*
10851434 ACTCT-TCTATTCTATTGCCACT
1 ACTCTCTCTATTATATTGCCACT
*
10851456 CCTCTC
1 ACTCTC
10851462 ATTTTCCCAA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
22 19 0.79
24 5 0.21
ACGTcount: A:0.17, C:0.35, G:0.04, T:0.44
Consensus pattern (23 bp):
ACTCTCTCTATTATATTGCCACT
Found at i:10851449 original size:22 final size:22
Alignment explanation
Indices: 10851419--10851460 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
10851409 AACTCTCCTT
10851419 TATTATATTGCCACTACTCTTC
1 TATTATATTGCCACTACTCTTC
* *
10851441 TATTCTATTGCCACTCCTCT
1 TATTATATTGCCACTACTCT
10851461 CATTTTCCCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.19, C:0.31, G:0.05, T:0.45
Consensus pattern (22 bp):
TATTATATTGCCACTACTCTTC
Found at i:10852354 original size:16 final size:17
Alignment explanation
Indices: 10852325--10852356 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
10852315 ATTTACCAAC
10852325 TATATAATAAATTTTAT
1 TATATAATAAATTTTAT
10852342 TATATAA-AAATTTTA
1 TATATAATAAATTTTA
10852357 ATTTGATATA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (17 bp):
TATATAATAAATTTTAT
Found at i:10854483 original size:24 final size:22
Alignment explanation
Indices: 10854455--10854514 Score: 59
Period size: 24 Copynumber: 2.6 Consensus size: 22
10854445 CAAATAAAAG
10854455 TTTTATTTAAAA-ATTGATAATTT
1 TTTTA-TTAAAATATTGA-AATTT
* *
10854478 TATTTAATAAAAATATTGACATTT
1 T-TTT-ATTAAAATATTGAAATTT
10854502 TTTTATTAAAATA
1 TTTTATTAAAATA
10854515 ATAATTAAGA
Statistics
Matches: 31, Mismatches: 3, Indels: 7
0.76 0.07 0.17
Matches are distributed among these distances:
22 8 0.26
23 4 0.13
24 13 0.42
25 6 0.19
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (22 bp):
TTTTATTAAAATATTGAAATTT
Found at i:10854677 original size:17 final size:18
Alignment explanation
Indices: 10854655--10854695 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
10854645 TAAATTAGTT
*
10854655 TAAATAT-AAATACAAAA
1 TAAATATAAAAAACAAAA
10854672 TAAATATAAAAAACAAAA
1 TAAATATAAAAAACAAAA
*
10854690 AAAATA
1 TAAATA
10854696 GAAACTAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
17 7 0.33
18 14 0.67
ACGTcount: A:0.76, C:0.05, G:0.00, T:0.20
Consensus pattern (18 bp):
TAAATATAAAAAACAAAA
Found at i:10855213 original size:22 final size:22
Alignment explanation
Indices: 10855188--10855232 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
10855178 GCTAATGTGG
* * * *
10855188 CACCAGTGAGGTGATAATTTTT
1 CACCAATGAAGTGAAAAATTTT
10855210 CACCAATGAAGTGAAAAATTTT
1 CACCAATGAAGTGAAAAATTTT
10855232 C
1 C
10855233 GCTGGTGGGG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.16, G:0.18, T:0.31
Consensus pattern (22 bp):
CACCAATGAAGTGAAAAATTTT
Done.