Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 57 of 195
Found at i:11758265 original size:3 final size:3
Alignment explanation
Indices: 11758257--11758309 Score: 88
Period size: 3 Copynumber: 17.3 Consensus size: 3
11758247 ATTGCTTTGT
*
11758257 TTA TTA TTA TTA TTA TTA TTTA TTA TTA TTA TTG TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
11758303 TTA TTA T
1 TTA TTA T
11758310 CATTTTTTCT
Statistics
Matches: 47, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
3 44 0.94
4 3 0.06
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:11759349 original size:17 final size:17
Alignment explanation
Indices: 11759327--11759369 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
11759317 TTATAAATCA
*
11759327 ATTTTTATTAAAAAATT
1 ATTTTTAATAAAAAATT
*
11759344 ATTTTTAATAAAATATT
1 ATTTTTAATAAAAAATT
*
11759361 TTTTTTAAT
1 ATTTTTAAT
11759370 CCTATCAAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.42, C:0.00, G:0.00, T:0.58
Consensus pattern (17 bp):
ATTTTTAATAAAAAATT
Found at i:11760489 original size:26 final size:25
Alignment explanation
Indices: 11760460--11760518 Score: 66
Period size: 26 Copynumber: 2.3 Consensus size: 25
11760450 GAGAATTTAA
* *
11760460 ATCATTTTTATGA-ATATTGCATTTGT
1 ATCATTTTT-TGATAT-TTACATTTGC
11760486 ATCATTGTTTTGATATTTACATTTGC
1 ATCATT-TTTTGATATTTACATTTGC
11760512 ATCATTT
1 ATCATTT
11760519 GGTGAGAATT
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 1 0.03
26 23 0.79
27 5 0.17
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.54
Consensus pattern (25 bp):
ATCATTTTTTGATATTTACATTTGC
Found at i:11760539 original size:72 final size:72
Alignment explanation
Indices: 11760418--11760566 Score: 226
Period size: 72 Copynumber: 2.1 Consensus size: 72
11760408 CAAAAATACT
* * **
11760418 TTGTTTTAATAATTGCATTTGCATCATTCGGTGAGAATTTAAATCATTTTTATGAATATTGCATT
1 TTGTTTTAATAATTACATTTGCATCATTCGGTGAGAATTTAAATAATTTTTATGAATATCACATT
11760483 TGTATCA
66 TGTATCA
* * * *
11760490 TTGTTTTGATATTTACATTTGCATCATTTGGTGAGAATTTAAATAATTTTTTTGAATATCACATT
1 TTGTTTTAATAATTACATTTGCATCATTCGGTGAGAATTTAAATAATTTTTATGAATATCACATT
11760555 TGTATCA
66 TGTATCA
11760562 TTGTT
1 TTGTT
11760567 AGTACCATGC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.28, C:0.09, G:0.13, T:0.50
Consensus pattern (72 bp):
TTGTTTTAATAATTACATTTGCATCATTCGGTGAGAATTTAAATAATTTTTATGAATATCACATT
TGTATCA
Found at i:11760614 original size:71 final size:71
Alignment explanation
Indices: 11760439--11760619 Score: 204
Period size: 72 Copynumber: 2.5 Consensus size: 71
11760429 ATTGCATTTG
* ** * **
11760439 CATCATTCGGTGAGAATTTAAATCATTTTTATGAATATTGCATTTGTATCATTGTTTTGATATTT
1 CATCATTTGGTGAGAATTTAAATCATTTTT-TGAATATCACATTTGTATCATTGTTTAGATACAT
* *
11760504 ACATTTG
65 ACATCTA
*
11760511 CATCATTTGGTGAGAATTTAAATAATTTTTTTGAATATCACATTTGTATCATTG-TTAG-TACCA
1 CATCATTTGGTGAGAATTTAAATCA-TTTTTTGAATATCACATTTGTATCATTGTTTAGATA-CA
*
11760574 TGCATCTA
64 TACATCTA
* *
11760582 CATCATTTTGTGAGTATTTAAATCATTGTTTTGAATAT
1 CATCATTTGGTGAGAATTTAAATCATT-TTTTGAATAT
11760620 TGCATCTATA
Statistics
Matches: 93, Mismatches: 13, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
70 4 0.04
71 40 0.43
72 44 0.47
73 5 0.05
ACGTcount: A:0.29, C:0.10, G:0.13, T:0.47
Consensus pattern (71 bp):
CATCATTTGGTGAGAATTTAAATCATTTTTTGAATATCACATTTGTATCATTGTTTAGATACATA
CATCTA
Found at i:11760632 original size:71 final size:71
Alignment explanation
Indices: 11760439--11760634 Score: 216
Period size: 71 Copynumber: 2.7 Consensus size: 71
11760429 ATTGCATTTG
* * **
11760439 CATCATTCGGTGAGAATTTAAATCATTTTTATGAATATTGCATTTGTATCATTGTTTTGATATTT
1 CATCATTTGGTGAGAATTTAAATCATTTTT-TGAATATTGCATTTGTATCATTGTTTAGATACAT
* *
11760504 ACATTTG
65 ACATCTA
* **
11760511 CATCATTTGGTGAGAATTTAAATAATTTTTTTGAATATCACATTTGTATCATTG-TTAG-TACCA
1 CATCATTTGGTGAGAATTTAAATCA-TTTTTTGAATATTGCATTTGTATCATTGTTTAGATA-CA
*
11760574 TGCATCTA
64 TACATCTA
* * * *
11760582 CATCATTTTGTGAGTATTTAAATCATTGTTTTGAATATTGCATCTATATCATT
1 CATCATTTGGTGAGAATTTAAATCATT-TTTTGAATATTGCATTTGTATCATT
11760635 TGGTGGAGAT
Statistics
Matches: 104, Mismatches: 17, Indels: 7
0.81 0.13 0.05
Matches are distributed among these distances:
70 4 0.04
71 51 0.49
72 44 0.42
73 5 0.05
ACGTcount: A:0.29, C:0.11, G:0.13, T:0.47
Consensus pattern (71 bp):
CATCATTTGGTGAGAATTTAAATCATTTTTTGAATATTGCATTTGTATCATTGTTTAGATACATA
CATCTA
Found at i:11760633 original size:46 final size:45
Alignment explanation
Indices: 11760574--11760669 Score: 140
Period size: 46 Copynumber: 2.1 Consensus size: 45
11760564 GTTAGTACCA
* *
11760574 TGCATCTACATCATTTTGT-GAGTATTTAAATCATTGTTTTGAATAT
1 TGCATCTACATCATTTGGTGGAG-ATCTAAATCATTG-TTTGAATAT
*
11760620 TGCATCTATATCATTTGGTGGAGATCTAAATCATTGTTTGAATAT
1 TGCATCTACATCATTTGGTGGAGATCTAAATCATTGTTTGAATAT
11760665 TGCAT
1 TGCAT
11760670 TTGCATCACA
Statistics
Matches: 46, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
45 14 0.30
46 29 0.63
47 3 0.07
ACGTcount: A:0.28, C:0.11, G:0.16, T:0.45
Consensus pattern (45 bp):
TGCATCTACATCATTTGGTGGAGATCTAAATCATTGTTTGAATAT
Found at i:11761644 original size:23 final size:23
Alignment explanation
Indices: 11761614--11761661 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
11761604 CTTGGATGCA
**
11761614 AATCTCTAAAATTTTTTAATGTG
1 AATCTCTAAAATTTTCAAATGTG
*
11761637 AATCTCTAAGATTTTCAAATGTG
1 AATCTCTAAAATTTTCAAATGTG
11761660 AA
1 AA
11761662 CTTTGAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.38, C:0.10, G:0.10, T:0.42
Consensus pattern (23 bp):
AATCTCTAAAATTTTCAAATGTG
Found at i:11761828 original size:18 final size:18
Alignment explanation
Indices: 11761807--11762043 Score: 105
Period size: 18 Copynumber: 13.4 Consensus size: 18
11761797 AATTATTTAC
11761807 GAATCTTGAAACTTTTGT
1 GAATCTTGAAACTTTTGT
* * *
11761825 GAATCTTGGAACCTTTAT
1 GAATCTTGAAACTTTTGT
*
11761843 GAATCTTAGAATC-TTTGT
1 GAATCTT-GAAACTTTTGT
* * * *
11761861 GAATTTTG-AACCTTCGC
1 GAATCTTGAAACTTTTGT
* * *
11761878 GAGTATT-AGAA-TCTTGT
1 GAATCTTGA-AACTTTTGT
*
11761895 GAATCTTGAAA-TCTTTAT
1 GAATCTTGAAACT-TTTGT
*
11761913 GAATCTTG-AACCTTTGT
1 GAATCTTGAAACTTTTGT
* * **
11761930 GAATC-TAAAACCTTTAC
1 GAATCTTGAAACTTTTGT
* * **
11761947 GAATCTTGGAA-TCGTTAC
1 GAATCTTGAAACT-TTTGT
*
11761965 GAATCTTGAAAATTTTGT
1 GAATCTTGAAACTTTTGT
*
11761983 GAATCTTGGAA-TTCTTGT
1 GAATCTTGAAACTT-TTGT
* * * **
11762001 GAATTTTTAACCTTTTCC
1 GAATCTTGAAACTTTTGT
*
11762019 AAATCTTGAAACTTTTGT
1 GAATCTTGAAACTTTTGT
11762037 GAATCTT
1 GAATCTT
11762044 TGAACCTTTA
Statistics
Matches: 159, Mismatches: 47, Indels: 26
0.69 0.20 0.11
Matches are distributed among these distances:
16 3 0.02
17 44 0.28
18 106 0.67
19 6 0.04
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.41
Consensus pattern (18 bp):
GAATCTTGAAACTTTTGT
Found at i:11761849 original size:36 final size:36
Alignment explanation
Indices: 11761802--11762062 Score: 155
Period size: 36 Copynumber: 7.4 Consensus size: 36
11761792 TTTTGAATTA
*
11761802 TTTACGAATCTTGAAACTTTTGTGAATCTTGGAACC
1 TTTACGAATCTTGAAACTTTTGTGAATCTTGAAACC
* * *
11761838 TTTATGAATCTTAGAATC-TTTGTGAATTTTG-AACC
1 TTTACGAATCTT-GAAACTTTTGTGAATCTTGAAACC
** * * * *
11761873 TTCGCGAGTATT-AGAA-TCTTGTGAATCTTGAAATC
1 TTTACGAATCTTGA-AACTTTTGTGAATCTTGAAACC
* * *
11761908 TTTATGAATCTTG-AACCTTTGTGAATC-TAAAACC
1 TTTACGAATCTTGAAACTTTTGTGAATCTTGAAACC
* * ** **
11761942 TTTACGAATCTTGGAA-TCGTTACGAATCTTGAAAAT
1 TTTACGAATCTTGAAACT-TTTGTGAATCTTGAAACC
** * **
11761978 TTTGTGAATCTTGGAA-TTCTTGTGAAT-TTTTAACC
1 TTTACGAATCTTGAAACTT-TTGTGAATCTTGAAACC
* *
11762013 TTTTCCAAATCTTGAAACTTTTGTGAATCTTTG-AACC
1 -TTTACGAATCTTGAAACTTTTGTGAATC-TTGAAACC
*
11762050 TTTACAAATCTTG
1 TTTACGAATCTTG
11762063 GAATATTTTC
Statistics
Matches: 167, Mismatches: 44, Indels: 28
0.70 0.18 0.12
Matches are distributed among these distances:
33 1 0.01
34 31 0.19
35 43 0.26
36 80 0.48
37 10 0.06
38 2 0.01
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (36 bp):
TTTACGAATCTTGAAACTTTTGTGAATCTTGAAACC
Found at i:11761912 original size:70 final size:70
Alignment explanation
Indices: 11761821--11762014 Score: 196
Period size: 70 Copynumber: 2.8 Consensus size: 70
11761811 CTTGAAACTT
* * * * *
11761821 TTGTGAATCTTGGAACCTTTATGAATCTTAGAATCTTTGTGAATTTTGAACCTTCGCGAGTATTA
1 TTGTGAATCTTGAAATCTTTATGAATCTT-GAATCTTTGTGAATTTTAAACCTTCACGAATATTA
11761886 GAATC-
65 GAATCG
* * * * * *
11761891 TTGTGAATCTTGAAATCTTTATGAATCTTGAACCTTTGTGAATCTAAAACCTTTACGAATCTTGG
1 TTGTGAATCTTGAAATCTTTATGAATCTTGAATCTTTGTGAATTTTAAACCTTCACGAATATTAG
11761956 AATCG
66 AATCG
** * *
11761961 TTACGAATCTTGAAAAT-TTTGTGAATCTTGGAAT-TCTTGTGAATTTTTAACCTT
1 TTGTGAATCTTG-AAATCTTTATGAATCTT-GAATCT-TTGTGAATTTTAAACCTT
11762015 TTCCAAATCT
Statistics
Matches: 102, Mismatches: 18, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
69 31 0.30
70 49 0.48
71 22 0.22
ACGTcount: A:0.28, C:0.14, G:0.16, T:0.41
Consensus pattern (70 bp):
TTGTGAATCTTGAAATCTTTATGAATCTTGAATCTTTGTGAATTTTAAACCTTCACGAATATTAG
AATCG
Found at i:11761951 original size:52 final size:52
Alignment explanation
Indices: 11761802--11761988 Score: 150
Period size: 52 Copynumber: 3.6 Consensus size: 52
11761792 TTTTGAATTA
* *
11761802 TTTACGAATCTTGAAACTTTTGTGAATCTTGGAACCTTTATGAATCTT-AGAATC
1 TTTACGAATCTTGAAACCTTTGTGAATC-TAGAACCTTTA-GAATCTTGA-AATC
** * * * *
11761856 TTTGTGAATTTTG-AACCTTCGCGAGTAT-TAGAATCTTGT-GAATCTTGAAATC
1 TTTACGAATCTTGAAACCTTTGTGA--ATCTAGAACCTT-TAGAATCTTGAAATC
* * *
11761908 TTTATGAATCTTG-AACCTTTGTGAATCTAAAACCTTTACGAATCTTGGAATC
1 TTTACGAATCTTGAAACCTTTGTGAATCTAGAACCTTTA-GAATCTTGAAATC
* **
11761960 GTTACGAATCTTGAAAATTTTGTGAATCT
1 TTTACGAATCTTGAAACCTTTGTGAATCT
11761989 TGGAATTCTT
Statistics
Matches: 106, Mismatches: 19, Indels: 17
0.75 0.13 0.12
Matches are distributed among these distances:
50 3 0.03
51 7 0.07
52 54 0.51
53 29 0.27
54 11 0.10
55 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.16, T:0.40
Consensus pattern (52 bp):
TTTACGAATCTTGAAACCTTTGTGAATCTAGAACCTTTAGAATCTTGAAATC
Found at i:11762116 original size:28 final size:27
Alignment explanation
Indices: 11762085--11762146 Score: 70
Period size: 28 Copynumber: 2.2 Consensus size: 27
11762075 ATTAGAAATC
* *
11762085 TTTTTTGAATCTTAGCATCTTTTACAAA
1 TTTTTTGAATCTT-GAATCTTTGACAAA
* *
11762113 TTTTTACGAATCTTGAATCTTTGACAAT
1 TTTTT-TGAATCTTGAATCTTTGACAAA
11762141 TTTTTT
1 TTTTTT
11762147 ATTTTTTTGA
Statistics
Matches: 28, Mismatches: 5, Indels: 3
0.78 0.14 0.08
Matches are distributed among these distances:
28 21 0.75
29 7 0.25
ACGTcount: A:0.26, C:0.13, G:0.08, T:0.53
Consensus pattern (27 bp):
TTTTTTGAATCTTGAATCTTTGACAAA
Found at i:11762147 original size:29 final size:29
Alignment explanation
Indices: 11762091--11762145 Score: 76
Period size: 28 Copynumber: 1.9 Consensus size: 29
11762081 AATCTTTTTT
* *
11762091 GAATCTTAGCATCTTTTACAAATTTTTAC
1 GAATCTTAGAATCTTTGACAAATTTTTAC
*
11762120 GAATCTT-GAATCTTTGACAATTTTTT
1 GAATCTTAGAATCTTTGACAAATTTTT
11762146 TATTTTTTTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 16 0.70
29 7 0.30
ACGTcount: A:0.29, C:0.15, G:0.09, T:0.47
Consensus pattern (29 bp):
GAATCTTAGAATCTTTGACAAATTTTTAC
Found at i:11763906 original size:20 final size:20
Alignment explanation
Indices: 11763824--11763896 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
11763814 ATTATGGTAA
11763824 ATTTGCATGATTATTAATAT
1 ATTTGCATGATTATTAATAT
* **
11763844 ATTTGTATGATTATTTTTAT
1 ATTTGCATGATTATTAATAT
*
11763864 ATTTGCATGATTATTAACAT
1 ATTTGCATGATTATTAATAT
11763884 ATTTGCATGATTA
1 ATTTGCATGATTA
11763897 ATTTTGTATT
Statistics
Matches: 46, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 46 1.00
ACGTcount: A:0.32, C:0.05, G:0.11, T:0.52
Consensus pattern (20 bp):
ATTTGCATGATTATTAATAT
Found at i:11763911 original size:3 final size:3
Alignment explanation
Indices: 11763903--11763927 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
11763893 ATTAATTTTG
11763903 TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT T
11763928 TATGATTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:11763919 original size:40 final size:40
Alignment explanation
Indices: 11763824--11763906 Score: 130
Period size: 40 Copynumber: 2.1 Consensus size: 40
11763814 ATTATGGTAA
* * *
11763824 ATTTGCATGATTATTAATATATTTGTATGATTATTTTTAT
1 ATTTGCATGATTATTAACATATTTGCATGATTAATTTTAT
*
11763864 ATTTGCATGATTATTAACATATTTGCATGATTAATTTTGT
1 ATTTGCATGATTATTAACATATTTGCATGATTAATTTTAT
11763904 ATT
1 ATT
11763907 ATTATTATTA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 39 1.00
ACGTcount: A:0.30, C:0.05, G:0.11, T:0.54
Consensus pattern (40 bp):
ATTTGCATGATTATTAACATATTTGCATGATTAATTTTAT
Found at i:11763955 original size:13 final size:13
Alignment explanation
Indices: 11763937--11763978 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
11763927 TTATGATTTG
*
11763937 TTATTTGCTTGAT
1 TTATTTGCATGAT
11763950 TTATTTGCATGAT
1 TTATTTGCATGAT
11763963 ATT-TTTGCATG-T
1 -TTATTTGCATGAT
11763975 TTAT
1 TTAT
11763979 GATATTTGGT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
11 2 0.08
12 2 0.08
13 20 0.77
14 2 0.08
ACGTcount: A:0.19, C:0.07, G:0.14, T:0.60
Consensus pattern (13 bp):
TTATTTGCATGAT
Found at i:11765211 original size:21 final size:22
Alignment explanation
Indices: 11765178--11765220 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
11765168 GTAAAATTTT
11765178 TTTCTCATCTT-CCCTTTGACTA
1 TTTCTCATCTTCCCCTTT-ACTA
11765200 TTTCTC-TCTTCCCCTTTACTA
1 TTTCTCATCTTCCCCTTTACTA
11765221 AAAGTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
21 8 0.40
22 12 0.60
ACGTcount: A:0.12, C:0.35, G:0.02, T:0.51
Consensus pattern (22 bp):
TTTCTCATCTTCCCCTTTACTA
Found at i:11766750 original size:26 final size:26
Alignment explanation
Indices: 11766711--11766777 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
11766701 GACTGAGCCG
*
11766711 AAATCTAAGGATGAAATAAGTTGGACT
1 AAATCGAA-GATGAAATAAGTTGGACT
* *
11766738 AAATTGAAGATGAAATAATTTGGACT
1 AAATCGAAGATGAAATAAGTTGGACT
11766764 AAATCGAAG-TGAAA
1 AAATCGAAGATGAAA
11766778 AGATGAAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
25 5 0.14
26 25 0.69
27 6 0.17
ACGTcount: A:0.48, C:0.06, G:0.21, T:0.25
Consensus pattern (26 bp):
AAATCGAAGATGAAATAAGTTGGACT
Found at i:11768590 original size:19 final size:19
Alignment explanation
Indices: 11768546--11768582 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
11768536 ATTTGAAAAG
11768546 ATTTTTTTATCTTTTATTA
1 ATTTTTTTATCTTTTATTA
11768565 ATTTTTTTATCTTTTATT
1 ATTTTTTTATCTTTTATT
11768583 TTTATTTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.19, C:0.05, G:0.00, T:0.76
Consensus pattern (19 bp):
ATTTTTTTATCTTTTATTA
Found at i:11769184 original size:20 final size:21
Alignment explanation
Indices: 11769130--11769184 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 21
11769120 TAGATTGCAT
11769130 AAAC-CTAAATCCAAACCCAG
1 AAACTCTAAATCCAAACCCAG
* *
11769150 AAACTTTAAAT-CAAACCTAG
1 AAACTCTAAATCCAAACCCAG
11769170 AAA-TCTAAATCCAAA
1 AAACTCTAAATCCAAA
11769185 ATTTTCGAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
19 6 0.20
20 19 0.63
21 5 0.17
ACGTcount: A:0.53, C:0.25, G:0.04, T:0.18
Consensus pattern (21 bp):
AAACTCTAAATCCAAACCCAG
Found at i:11769570 original size:25 final size:25
Alignment explanation
Indices: 11769536--11769586 Score: 77
Period size: 25 Copynumber: 2.0 Consensus size: 25
11769526 AAAATAAATA
11769536 ATAATAATAATAA-TAATACAATAAT
1 ATAATAATAATAACT-ATACAATAAT
*
11769561 ATAATAATAATAACTATACTATAAT
1 ATAATAATAATAACTATACAATAAT
11769586 A
1 A
11769587 ATACAAGATA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 23 0.96
26 1 0.04
ACGTcount: A:0.61, C:0.06, G:0.00, T:0.33
Consensus pattern (25 bp):
ATAATAATAATAACTATACAATAAT
Found at i:11769586 original size:28 final size:28
Alignment explanation
Indices: 11769528--11769606 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 28
11769518 AAGGAAAGAA
11769528 AATAA-ATAATAATAATAA-TAATAATAC
1 AATAATATAATAATAATAACT-ATAATAC
* *
11769555 AATAATATAATAATAATAACTATACTAT
1 AATAATATAATAATAATAACTATAATAC
* *
11769583 AATAATACAA-GATAATATACTATA
1 AATAATATAATAATAATA-ACTATA
11769607 GTAATATAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 5
0.83 0.07 0.09
Matches are distributed among these distances:
27 11 0.24
28 33 0.73
29 1 0.02
ACGTcount: A:0.61, C:0.06, G:0.01, T:0.32
Consensus pattern (28 bp):
AATAATATAATAATAATAACTATAATAC
Found at i:11769589 original size:3 final size:3
Alignment explanation
Indices: 11769532--11769573 Score: 61
Period size: 3 Copynumber: 14.7 Consensus size: 3
11769522 AAAGAAAATA
*
11769532 AAT AAT AAT AAT AAT AAT AAT -AC AAT AAT -AT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AA
11769574 CTATACTATA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 3 0.09
3 32 0.91
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:11770065 original size:64 final size:64
Alignment explanation
Indices: 11769977--11770178 Score: 183
Period size: 64 Copynumber: 3.1 Consensus size: 64
11769967 CAAGTCAGGA
* * * *
11769977 AAATGATCTGGACTAAGCCAAGATCAAA-TGGATGATTAAGACTGAGTCACAAGTCAACAAAATG
1 AAATGATCTGGACTAAGCCAAGATCAAACAGG-TGATCAAGACTGAGCCACAAGTCAAAAAAATG
* * * **
11770041 AGATGATCTGGACTGAGCCGAGATCAAACAGGTGATCGGGACTGAGCCACAAGTCAAAAAAATG
1 AAATGATCTGGACTAAGCCAAGATCAAACAGGTGATCAAGACTGAGCCACAAGTCAAAAAAATG
* ** * * * * * * * *
11770105 AAATGATTTAAATTTAGCCAAAATCAAAATAAGTGATCGAGACTGAGTCATAAGTTC-AAAAAAT
1 AAATGATCTGGACTAAGCCAAGATC-AAACAGGTGATCAAGACTGAGCCACAAG-TCAAAAAAAT
11770169 G
64 G
11770170 AAATGATCT
1 AAATGATCT
11770179 AGATTGAGCT
Statistics
Matches: 112, Mismatches: 23, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
64 69 0.62
65 41 0.37
66 2 0.02
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (64 bp):
AAATGATCTGGACTAAGCCAAGATCAAACAGGTGATCAAGACTGAGCCACAAGTCAAAAAAATG
Found at i:11770207 original size:65 final size:64
Alignment explanation
Indices: 11770015--11770224 Score: 199
Period size: 65 Copynumber: 3.3 Consensus size: 64
11770005 TGGATGATTA
* * * * *
11770015 AGACTGAGTCACAAGTCAACAAAATGAGATGATCTGGACTGAGCCGAGA-TCAAACAGGTGATCG
1 AGACTGAGTCACAAGTCAA-AAAATGAAATGATCTAGATTGAGCCGAGATTAAAACAAGTGATCG
* * * * * * * * *
11770079 GGACTGAGCCACAAGTCAAAAAAATGAAATGATTTAAATTTAGCCAAAATCAAAATAAGTGATCG
1 AGACTGAGTCACAAGTC-AAAAAATGAAATGATCTAGATTGAGCCGAGATTAAAACAAGTGATCG
* * * *
11770144 AGACTGAGTCATAAGTTCAAAAAATGAAATGATCTAGATTGAGCTGAGATTAAAACAAATGATCA
1 AGACTGAGTCACAAG-TCAAAAAATGAAATGATCTAGATTGAGCCGAGATTAAAACAAGTGATCG
* *
11770209 AGATTGAG-CCCAAGTC
1 AGACTGAGTCACAAGTC
11770225 TGAAAAACAA
Statistics
Matches: 113, Mismatches: 30, Indels: 7
0.75 0.20 0.05
Matches are distributed among these distances:
63 2 0.02
64 40 0.35
65 69 0.61
66 2 0.02
ACGTcount: A:0.43, C:0.15, G:0.21, T:0.21
Consensus pattern (64 bp):
AGACTGAGTCACAAGTCAAAAAATGAAATGATCTAGATTGAGCCGAGATTAAAACAAGTGATCG
Found at i:11771438 original size:9 final size:10
Alignment explanation
Indices: 11771413--11771442 Score: 51
Period size: 10 Copynumber: 2.9 Consensus size: 10
11771403 TGCCCCATCA
11771413 ATTTCTTTTTC
1 ATTT-TTTTTC
11771424 ATTTTTTTTC
1 ATTTTTTTTC
11771434 ATTTTTTTT
1 ATTTTTTTT
11771443 ATATGTATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 15 0.79
11 4 0.21
ACGTcount: A:0.10, C:0.10, G:0.00, T:0.80
Consensus pattern (10 bp):
ATTTTTTTTC
Found at i:11778039 original size:23 final size:23
Alignment explanation
Indices: 11778009--11778083 Score: 71
Period size: 28 Copynumber: 3.0 Consensus size: 23
11777999 ATAAAATCAG
11778009 TAAATTAAAAATTAAAAATAAATTAAA
1 TAAATTAAAAATTAAAAAT--A--AAA
*
11778036 TTAAATTAAAAGTT-AAAATAAAA
1 -TAAATTAAAAATTAAAAATAAAA
*
11778059 TAAATTTAAAAAATAAAAATAAAA
1 TAAA-TTAAAAATTAAAAATAAAA
11778083 T
1 T
11778084 GAAAAAAGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
22 4 0.10
23 10 0.24
24 10 0.24
25 1 0.02
27 5 0.12
28 12 0.29
ACGTcount: A:0.69, C:0.00, G:0.01, T:0.29
Consensus pattern (23 bp):
TAAATTAAAAATTAAAAATAAAA
Found at i:11778067 original size:28 final size:28
Alignment explanation
Indices: 11777994--11778083 Score: 93
Period size: 27 Copynumber: 3.4 Consensus size: 28
11777984 ATTTATCAAA
* *
11777994 TAAAAATAAAAT-CAGTAAATTAAAAAT
1 TAAAAATAAAATAAATTAAATTAAAAAT
* *
11778021 TAAAAATAAATTAAATTAAATTAAAAGT
1 TAAAAATAAAATAAATTAAATTAAAAAT
*
11778049 T-AAAATAAAATAAA-T---TTAAAAAA
1 TAAAAATAAAATAAATTAAATTAAAAAT
11778072 TAAAAATAAAAT
1 TAAAAATAAAAT
11778084 GAAAAAAGAA
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
23 7 0.13
24 10 0.19
26 1 0.02
27 23 0.43
28 13 0.24
ACGTcount: A:0.69, C:0.01, G:0.02, T:0.28
Consensus pattern (28 bp):
TAAAAATAAAATAAATTAAATTAAAAAT
Found at i:11778079 original size:19 final size:19
Alignment explanation
Indices: 11778050--11778097 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
11778040 ATTAAAAGTT
* *
11778050 AAAAT-AAAATAAATTTAA
1 AAAATAAAAATAAAATGAA
11778068 AAAATAAAAATAAAATGAA
1 AAAATAAAAATAAAATGAA
*
11778087 AAAAGAAAAAT
1 AAAATAAAAAT
11778098 TAGCGATTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (19 bp):
AAAATAAAAATAAAATGAA
Found at i:11778935 original size:3 final size:3
Alignment explanation
Indices: 11778927--11778968 Score: 84
Period size: 3 Copynumber: 14.0 Consensus size: 3
11778917 AAGAAAAATA
11778927 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
11778969 GTAATGTAAT
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:11782868 original size:26 final size:26
Alignment explanation
Indices: 11782828--11782929 Score: 100
Period size: 26 Copynumber: 3.9 Consensus size: 26
11782818 ATAATGGATG
* *
11782828 AAAAAAAAGAGAAAAATAAAAGAAAAT
1 AAAAAAATGAAAAAAATAAAA-AAAAT
* *
11782855 -AAAACATG-AAAAAATGAAAAAAAT
1 AAAAAAATGAAAAAAATAAAAAAAAT
*
11782879 AAAAAAATGAAAAAAATGAAAAAAAT
1 AAAAAAATGAAAAAAATAAAAAAAAT
* *
11782905 GAAAAAATTAGAAAAAAATGAAAAA
1 -AAAAAAAT-GAAAAAAATAAAAAA
11782930 TTGAAAAATG
Statistics
Matches: 65, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
24 5 0.08
25 16 0.25
26 22 0.34
27 7 0.11
28 15 0.23
ACGTcount: A:0.78, C:0.01, G:0.10, T:0.11
Consensus pattern (26 bp):
AAAAAAATGAAAAAAATAAAAAAAAT
Found at i:11782930 original size:26 final size:26
Alignment explanation
Indices: 11782825--11782937 Score: 76
Period size: 25 Copynumber: 4.3 Consensus size: 26
11782815 TCAATAATGG
* *
11782825 ATGAAAAAAAAGAGAAAAATAAAAGAAA
1 ATGAAAAAAATGA-AAAAATAGAA-AAA
*
11782853 AT--AAAACATGAAAAAAT-GAAAAAA
1 ATGAAAAAAATGAAAAAATAG-AAAAA
11782877 AT-AAAAAAATGAAAAAA-ATGAAAAAA
1 ATGAAAAAAATGAAAAAATA-G-AAAAA
*
11782903 ATGAAAAAATTAGAAAAAA-ATGAAAAA
1 ATGAAAAAAAT-GAAAAAATA-GAAAAA
*
11782930 TTGAAAAA
1 ATGAAAAA
11782938 TGAGAGAAAA
Statistics
Matches: 73, Mismatches: 6, Indels: 13
0.79 0.07 0.14
Matches are distributed among these distances:
24 5 0.07
25 21 0.29
26 16 0.22
27 19 0.26
28 12 0.16
ACGTcount: A:0.76, C:0.01, G:0.11, T:0.12
Consensus pattern (26 bp):
ATGAAAAAAATGAAAAAATAGAAAAA
Found at i:11782937 original size:9 final size:9
Alignment explanation
Indices: 11782825--11782929 Score: 119
Period size: 9 Copynumber: 11.9 Consensus size: 9
11782815 TCAATAATGG
11782825 ATGAAAAAA
1 ATGAAAAAA
* *
11782834 AAGAGAAAA
1 ATGAAAAAA
*
11782843 ATAAAAGAAA
1 ATGAAA-AAA
*
11782853 AT--AAAAC
1 ATGAAAAAA
11782860 ATG-AAAAA
1 ATGAAAAAA
11782868 ATGAAAAAA
1 ATGAAAAAA
11782877 AT-AAAAAA
1 ATGAAAAAA
11782885 ATGAAAAAA
1 ATGAAAAAA
11782894 ATGAAAAAA
1 ATGAAAAAA
11782903 ATGAAAAAA
1 ATGAAAAAA
*
11782912 TTAGAAAAAA
1 AT-GAAAAAA
11782922 ATGAAAAA
1 ATGAAAAA
11782930 TTGAAAAATG
Statistics
Matches: 82, Mismatches: 9, Indels: 10
0.81 0.09 0.10
Matches are distributed among these distances:
7 4 0.05
8 17 0.21
9 48 0.59
10 13 0.16
ACGTcount: A:0.77, C:0.01, G:0.10, T:0.11
Consensus pattern (9 bp):
ATGAAAAAA
Found at i:11782937 original size:17 final size:18
Alignment explanation
Indices: 11782825--11782929 Score: 119
Period size: 17 Copynumber: 5.9 Consensus size: 18
11782815 TCAATAATGG
* *
11782825 ATGAAAAAAAAGAGAAAA
1 ATGAAAAAAATGAAAAAA
* *
11782843 ATAAAAGAAAAT--AAAAC
1 ATGAAA-AAAATGAAAAAA
11782860 ATG-AAAAAATGAAAAAA
1 ATGAAAAAAATGAAAAAA
11782877 AT-AAAAAAATGAAAAAA
1 ATGAAAAAAATGAAAAAA
11782894 ATGAAAAAAATGAAAAAA
1 ATGAAAAAAATGAAAAAA
*
11782912 TTAGAAAAAAATGAAAAA
1 AT-GAAAAAAATGAAAAA
11782930 TTGAAAAATG
Statistics
Matches: 74, Mismatches: 7, Indels: 11
0.80 0.08 0.12
Matches are distributed among these distances:
15 5 0.07
16 2 0.03
17 27 0.36
18 21 0.28
19 19 0.26
ACGTcount: A:0.77, C:0.01, G:0.10, T:0.11
Consensus pattern (18 bp):
ATGAAAAAAATGAAAAAA
Found at i:11782938 original size:26 final size:27
Alignment explanation
Indices: 11782863--11782951 Score: 103
Period size: 26 Copynumber: 3.4 Consensus size: 27
11782853 ATAAAACATG
* *
11782863 AAAAAATGAAAAAAATAAAAAAAT-GA
1 AAAAAATGAAAAAAATGAAAAATTAGA
11782889 AAAAAATGAAAAAAATGAAAAAATTAGA
1 AAAAAATGAAAAAAATG-AAAAATTAGA
* *
11782917 AAAAAATG-AAAAATTGAAAAATGAG-
1 AAAAAATGAAAAAAATGAAAAATTAGA
*
11782942 AGAAAATGAA
1 AAAAAATGAA
11782952 GACTCAAATT
Statistics
Matches: 55, Mismatches: 5, Indels: 6
0.83 0.08 0.09
Matches are distributed among these distances:
25 7 0.13
26 25 0.45
27 13 0.24
28 10 0.18
ACGTcount: A:0.74, C:0.00, G:0.12, T:0.13
Consensus pattern (27 bp):
AAAAAATGAAAAAAATGAAAAATTAGA
Found at i:11782951 original size:17 final size:15
Alignment explanation
Indices: 11782850--11782951 Score: 62
Period size: 17 Copynumber: 6.1 Consensus size: 15
11782840 AAAATAAAAG
*
11782850 AAAAT-AAAACATGAA
1 AAAATGAAAAAATG-A
*
11782865 AAAATGAAAAAAATAAA
1 AAAATG-AAAAAAT-GA
11782882 AAAATGAAAAAAATGAAA
1 AAAATG-AAAAAATG--A
11782900 AAAATGAAAAAATTAGAAA
1 AAAATGAAAAAA-T-G--A
*
11782919 AAAATGAAAAATTGA
1 AAAATGAAAAAATGA
11782934 AAAATGAGAGAAAATGA
1 AAAATGA-A-AAAATGA
11782951 A
1 A
11782952 GACTCAAATT
Statistics
Matches: 73, Mismatches: 5, Indels: 16
0.78 0.05 0.17
Matches are distributed among these distances:
15 13 0.18
16 1 0.01
17 35 0.48
18 9 0.12
19 15 0.21
ACGTcount: A:0.74, C:0.01, G:0.12, T:0.14
Consensus pattern (15 bp):
AAAATGAAAAAATGA
Found at i:11788681 original size:23 final size:23
Alignment explanation
Indices: 11788651--11788725 Score: 71
Period size: 28 Copynumber: 3.0 Consensus size: 23
11788641 ATAAAATCAG
11788651 TAAATTAAAAATTAAAAATAAATTAAA
1 TAAATTAAAAATTAAAAAT--A--AAA
*
11788678 TTAAATTAAAAGTT-AAAATAAAA
1 -TAAATTAAAAATTAAAAATAAAA
*
11788701 TAAATTTAAAAAATAAAAATAAAA
1 TAAA-TTAAAAATTAAAAATAAAA
11788725 T
1 T
11788726 GAAAAAAGAA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
22 4 0.10
23 10 0.24
24 10 0.24
25 1 0.02
27 5 0.12
28 12 0.29
ACGTcount: A:0.69, C:0.00, G:0.01, T:0.29
Consensus pattern (23 bp):
TAAATTAAAAATTAAAAATAAAA
Found at i:11788709 original size:28 final size:28
Alignment explanation
Indices: 11788636--11788725 Score: 93
Period size: 27 Copynumber: 3.4 Consensus size: 28
11788626 ATTTATCAAA
* *
11788636 TAAAAATAAAAT-CAGTAAATTAAAAAT
1 TAAAAATAAAATAAATTAAATTAAAAAT
* *
11788663 TAAAAATAAATTAAATTAAATTAAAAGT
1 TAAAAATAAAATAAATTAAATTAAAAAT
*
11788691 T-AAAATAAAATAAA-T---TTAAAAAA
1 TAAAAATAAAATAAATTAAATTAAAAAT
11788714 TAAAAATAAAAT
1 TAAAAATAAAAT
11788726 GAAAAAAGAA
Statistics
Matches: 54, Mismatches: 7, Indels: 7
0.79 0.10 0.10
Matches are distributed among these distances:
23 7 0.13
24 10 0.19
26 1 0.02
27 23 0.43
28 13 0.24
ACGTcount: A:0.69, C:0.01, G:0.02, T:0.28
Consensus pattern (28 bp):
TAAAAATAAAATAAATTAAATTAAAAAT
Found at i:11788721 original size:19 final size:19
Alignment explanation
Indices: 11788692--11788739 Score: 62
Period size: 19 Copynumber: 2.6 Consensus size: 19
11788682 ATTAAAAGTT
* *
11788692 AAAAT-AAAATAAATTTAA
1 AAAATAAAAATAAAATGAA
11788710 AAAATAAAAATAAAATGAA
1 AAAATAAAAATAAAATGAA
*
11788729 AAAAGAAAAAT
1 AAAATAAAAAT
11788740 TAGCGATTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 5 0.19
19 21 0.81
ACGTcount: A:0.77, C:0.00, G:0.04, T:0.19
Consensus pattern (19 bp):
AAAATAAAAATAAAATGAA
Found at i:11793520 original size:35 final size:34
Alignment explanation
Indices: 11793481--11793593 Score: 122
Period size: 35 Copynumber: 3.2 Consensus size: 34
11793471 TCAATAATGG
*
11793481 ATGAAAAAAAAGAGAAAAATAAAAGAAAAT-AAAAC
1 ATGAAAAAAAAGA-AAAAATAAAA-AAAATGAAAAA
* *
11793516 ATG-AAAAAATGAAAAAAATGAAAAAAATGAAAAAA
1 ATGAAAAAAAAG-AAAAAATAAAAAAAATG-AAAAA
* *
11793551 ATGAAAAAAAATGAAAAAATTAGAAAAATGAAAAA
1 ATGAAAAAAAA-GAAAAAATAAAAAAAATGAAAAA
11793586 ATGAAAAA
1 ATGAAAAA
11793594 TGAAAAAACT
Statistics
Matches: 67, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
33 5 0.07
34 16 0.24
35 24 0.36
36 21 0.31
37 1 0.01
ACGTcount: A:0.76, C:0.01, G:0.12, T:0.12
Consensus pattern (34 bp):
ATGAAAAAAAAGAAAAAATAAAAAAAATGAAAAA
Found at i:11793527 original size:8 final size:8
Alignment explanation
Indices: 11793506--11793623 Score: 116
Period size: 9 Copynumber: 14.0 Consensus size: 8
11793496 AAAATAAAAG
11793506 AAAAT-AA
1 AAAATGAA
*
11793513 AACATGAA
1 AAAATGAA
11793521 AAAATGAAA
1 AAAATG-AA
11793530 AAAATGAAA
1 AAAATG-AA
11793539 AAAATGAAA
1 AAAATG-AA
11793548 AAAATGAAAA
1 AAAATG--AA
11793558 AAAATGAA
1 AAAATGAA
*
11793566 AAAATTAGA
1 AAAATGA-A
11793575 AAAATGAA
1 AAAATGAA
11793583 AAAATG-A
1 AAAATGAA
11793590 AAAATGAA
1 AAAATGAA
11793598 AAAACTG-A
1 AAAA-TGAA
11793606 AAAATGAGA
1 AAAATGA-A
11793615 GAAAATGAA
1 -AAAATGAA
11793624 GACTCAAATT
Statistics
Matches: 98, Mismatches: 4, Indels: 16
0.83 0.03 0.14
Matches are distributed among these distances:
7 13 0.13
8 32 0.33
9 37 0.38
10 16 0.16
ACGTcount: A:0.73, C:0.02, G:0.13, T:0.13
Consensus pattern (8 bp):
AAAATGAA
Found at i:11793531 original size:9 final size:9
Alignment explanation
Indices: 11793481--11793609 Score: 128
Period size: 9 Copynumber: 14.9 Consensus size: 9
11793471 TCAATAATGG
11793481 ATGAAAAAA
1 ATGAAAAAA
* *
11793490 AAGAGAAAA
1 ATGAAAAAA
*
11793499 ATAAAAGAAA
1 ATGAAA-AAA
*
11793509 AT--AAAAC
1 ATGAAAAAA
11793516 ATG-AAAAA
1 ATGAAAAAA
11793524 ATGAAAAAA
1 ATGAAAAAA
11793533 ATGAAAAAA
1 ATGAAAAAA
11793542 ATGAAAAAA
1 ATGAAAAAA
11793551 ATGAAAAAAA
1 ATG-AAAAAA
11793561 ATG-AAAAA
1 ATGAAAAAA
* *
11793569 ATTAGAAAA
1 ATGAAAAAA
11793578 ATG-AAAAA
1 ATGAAAAAA
11793586 ATG--AAAA
1 ATGAAAAAA
11793593 ATGAAAAAA
1 ATGAAAAAA
*
11793602 CTGAAAAA
1 ATGAAAAA
11793610 TGAGAGAAAA
Statistics
Matches: 101, Mismatches: 12, Indels: 14
0.80 0.09 0.11
Matches are distributed among these distances:
7 11 0.11
8 23 0.23
9 53 0.52
10 14 0.14
ACGTcount: A:0.75, C:0.02, G:0.12, T:0.12
Consensus pattern (9 bp):
ATGAAAAAA
Found at i:11793592 original size:6 final size:7
Alignment explanation
Indices: 11793557--11793612 Score: 58
Period size: 8 Copynumber: 7.1 Consensus size: 7
11793547 AAAAATGAAA
11793557 AAAAATG
1 AAAAATG
11793564 AAAAAATTAG
1 -AAAAA-T-G
11793574 AAAAATG
1 AAAAATG
11793581 AAAAAATG
1 -AAAAATG
11793589 AAAAATG
1 AAAAATG
11793596 AAAAAACTG
1 -AAAAA-TG
11793605 AAAAATG
1 AAAAATG
11793612 A
1 A
11793613 GAGAAAATGA
Statistics
Matches: 43, Mismatches: 0, Indels: 11
0.80 0.00 0.20
Matches are distributed among these distances:
7 11 0.26
8 23 0.53
9 8 0.19
10 1 0.02
ACGTcount: A:0.71, C:0.02, G:0.12, T:0.14
Consensus pattern (7 bp):
AAAAATG
Found at i:11794827 original size:33 final size:33
Alignment explanation
Indices: 11794758--11794827 Score: 77
Period size: 33 Copynumber: 2.1 Consensus size: 33
11794748 TTGAAAGAAA
* * ** ** *
11794758 GCATAGCATGCATTGCATTTTTGAATGTTTAGT
1 GCATAGCATGCATTACATATGAGAATGTCCAAT
11794791 GCATAGCATGCATTACATATGAGAATGTCCAAT
1 GCATAGCATGCATTACATATGAGAATGTCCAAT
11794824 GCAT
1 GCAT
11794828 GAAACAAGGA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (33 bp):
GCATAGCATGCATTACATATGAGAATGTCCAAT
Found at i:11795178 original size:44 final size:43
Alignment explanation
Indices: 11795050--11795806 Score: 522
Period size: 43 Copynumber: 17.5 Consensus size: 43
11795040 GATTTTCAAT
** * ** *
11795050 GAGCCTTATTTATTTTTCAAAGTCATTGAACATCTGTTTAAAG
1 GAGCCTTATTTATTTTTCAAAGTTGTTGAACCTCTACTTAGAG
* * * * *
11795093 GAGCTTTATTTATTTTTTAAAATCGTTGAACCTC-CCATTAGAG
1 GAGCCTTATTTATTTTTCAAAGTTGTTGAACCTCTAC-TTAGAG
* * *
11795136 GAGCCTTAATTACTTTTTCAAAGTTGTTGAGCCTCTATTTAGAG
1 GAGCCTTATTTA-TTTTTCAAAGTTGTTGAACCTCTACTTAGAG
* * * * *
11795180 AAACTTTGTTTA-TTTTCTAAAGTTGTTGAACCTCTACTTAGAA
1 GAGCCTTATTTATTTTTC-AAAGTTGTTGAACCTCTACTTAGAG
* * *
11795223 GAGCTTTATTTACTTTTTCAAAGTCGTTGAACCTATACTT-GAG
1 GAGCCTTATTTA-TTTTTCAAAGTTGTTGAACCTCTACTTAGAG
* * * * * *
11795266 GAACTTTATTTATTTTTCAAAATTGTTGAACCT-TGCTTAAAT
1 GAGCCTTATTTATTTTTCAAAGTTGTTGAACCTCTACTTAGAG
* * *
11795308 GAGCCTTATTTACTTTTTCAAAGTTGTTGAGCCACTACTTAGAT
1 GAGCCTTATTTA-TTTTTCAAAGTTGTTGAACCTCTACTTAGAG
* * * * *
11795352 GAGTCTTATTTATTTTTCAAAGTGGTTGAGCCTCTATTTAGAT
1 GAGCCTTATTTATTTTTCAAAGTTGTTGAACCTCTACTTAGAG
* * * * *
11795395 AAACTTTATTTACTTTTTCAAAGTTCTTAAACCTCTACTTAGAG
1 GAGCCTTATTTA-TTTTTCAAAGTTGTTGAACCTCTACTTAGAG
* * *
11795439 GAG-CTCTATTTATTTTTCAAAGTTGTTAAACATTTACTTAGAG
1 GAGCCT-TATTTATTTTTCAAAGTTGTTGAACCTCTACTTAGAG
* * * * * * *
11795482 GAGCTTTATTTACTTTTCTAAAGTTATTGAATCTCTGCTTAAAT
1 GAGCCTTATTTATTTTTC-AAAGTTGTTGAACCTCTACTTAGAG
* ** *
11795526 GAGCCTTATTTAATTTTTGAAAGTCATTGAACCTCTACTTAGAA
1 GAGCCTTATTT-ATTTTTCAAAGTTGTTGAACCTCTACTTAGAG
* * * * ** * *
11795570 GAGCCTTATATATTTTTTAAAATCGTT-AAGCCTCTGTTTAAAA
1 GAGCCTTATTTATTTTTCAAAGTTGTTGAA-CCTCTACTTAGAG
* ** * ** *
11795613 GAGCCTTATTTACTTTTCTAAAGTCATTGAGCCTCTGTTTAAAG
1 GAGCCTTATTTATTTTTC-AAAGTTGTTGAACCTCTACTTAGAG
* ** * *
11795657 AAGCCTTATTTATTTTTCTATAA-TCATTGAGCCTCTACTTAGAT
1 GAGCCTTATTTATTTTTC-A-AAGTTGTTGAACCTCTACTTAGAG
** * * * ** *
11795701 GCTCTTTATTTATTTTTCAAAATTGTTGAGCCTCTGTTTATAG
1 GAGCCTTATTTATTTTTCAAAGTTGTTGAACCTCTACTTAGAG
** * * * *
11795744 GAGTTTTATTTGTTTTTCAAAGTTGTTGAGCCTCTATTTAGAA
1 GAGCCTTATTTATTTTTCAAAGTTGTTGAACCTCTACTTAGAG
* *
11795787 GAG-TTTATTTATTTCTCAAA
1 GAGCCTTATTTATTTTTCAAA
11795807 AGTCATGAAG
Statistics
Matches: 574, Mismatches: 121, Indels: 39
0.78 0.16 0.05
Matches are distributed among these distances:
41 4 0.01
42 54 0.09
43 277 0.48
44 226 0.39
45 13 0.02
ACGTcount: A:0.28, C:0.15, G:0.14, T:0.44
Consensus pattern (43 bp):
GAGCCTTATTTATTTTTCAAAGTTGTTGAACCTCTACTTAGAG
Found at i:11795195 original size:87 final size:86
Alignment explanation
Indices: 11795050--11795800 Score: 398
Period size: 87 Copynumber: 8.7 Consensus size: 86
11795040 GATTTTCAAT
* * ** * *
11795050 GAGCCTTATTTA-TTTTTCAAAGTCATTGAACATCTGTTTAAAGGAGCTTTATTTATTTTTTAAA
1 GAGCCTTATTTACTTTTTCAAAGTCGTTGAACCTCTACTTAGAGGAACTTTATTTATTTTTTAAA
* *
11795114 ATCGTTGAACCTCCCATTAGAG
66 ATTGTTGAACCT-CCATTAGAA
* * * * * * *
11795136 GAGCCTTAATTACTTTTTCAAAGTTGTTGAGCCTCTATTTAGAGAAACTTTGTTTATTTTCTAAA
1 GAGCCTTATTTACTTTTTCAAAGTCGTTGAACCTCTACTTAGAGGAACTTTATTTATTTTTTAAA
* *
11795201 GTTGTTGAACCTCTACTTAGAA
66 ATTGTTGAACCTCCA-TTAGAA
* * *
11795223 GAGCTTTATTTACTTTTTCAAAGTCGTTGAACCTATACTT-GAGGAACTTTATTTATTTTTCAAA
1 GAGCCTTATTTACTTTTTCAAAGTCGTTGAACCTCTACTTAGAGGAACTTTATTTATTTTTTAAA
*
11795287 ATTGTTGAACCTTGC-TTA-AA
66 ATTGTTGAACC-TCCATTAGAA
* * * * * *
11795307 TGAGCCTTATTTACTTTTTCAAAGTTGTTGAGCCACTACTTAGATG-AGTCTTATTTATTTTTCA
1 -GAGCCTTATTTACTTTTTCAAAGTCGTTGAACCTCTACTTAGAGGAACT-TTATTTATTTTTTA
* * * *
11795371 AAGTGGTTGAGCCTCTATTTAGATA
64 AAATTGTTGAACCTCCA-TTAGA-A
* * * * * *
11795396 -AACTTTATTTACTTTTTCAAAGTTC-TTAAACCTCTACTTAGAGGAGCTCTATTTATTTTTCAA
1 GAGCCTTATTTACTTTTTCAAAG-TCGTTGAACCTCTACTTAGAGGAACTTTATTTATTTTTTAA
* * * ** *
11795459 AGTTGTTAAACATTTACTTAGAG
65 AATTGTTGAACCTCCA-TTAGAA
* ** * * * * * * *
11795482 GAGCTTTATTTAC-TTTTCTAAAGTTATTGAATCTCTGCTTAAATGAGCCTTATTTAATTTTTGA
1 GAGCCTTATTTACTTTTTC-AAAGTCGTTGAACCTCTACTTAGAGGAACTTTATTT-ATTTTTTA
* ** *
11795546 AAGTCATTGAACCTCTACTTAGAA
64 AAATTGTTGAACCTCCA-TTAGAA
* * * ** * * * * *
11795570 GAGCCTTATATA-TTTTTTAAAATCGTT-AAGCCTCTGTTTAAAAGAGCCTTATTTACTTTTCTA
1 GAGCCTTATTTACTTTTTCAAAGTCGTTGAA-CCTCTACTTAGAGGAACTTTATTTA-TTTTTTA
* ** * **
11795633 AAGTCATTGAGCCTCTGTTTA-AA
64 AAATTGTTGAACCTC-CATTAGAA
* * * ** *
11795656 GAAGCCTTATTTA-TTTTTCTATAA-TCATTGAGCCTCTACTTAGATGCTCTTTATTTATTTTTC
1 G-AGCCTTATTTACTTTTTC-A-AAGTCGTTGAACCTCTACTTAGAGGAACTTTATTTATTTTTT
* ** * *
11795719 AAAATTGTTGAGCCTCTGTTTATAG
63 AAAATTGTTGAACCTC-CATTAGAA
** * * * * * *
11795744 GAGTTTTATTT-GTTTTTCAAAGTTGTTGAGCCTCTATTTAGAAG-AGTTTATTTATTT
1 GAGCCTTATTTACTTTTTCAAAGTCGTTGAACCTCTACTTAGAGGAACTTTATTTATTT
11795801 CTCAAAAGTC
Statistics
Matches: 526, Mismatches: 112, Indels: 55
0.76 0.16 0.08
Matches are distributed among these distances:
84 2 0.00
85 54 0.10
86 101 0.19
87 298 0.57
88 67 0.13
89 4 0.01
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.44
Consensus pattern (86 bp):
GAGCCTTATTTACTTTTTCAAAGTCGTTGAACCTCTACTTAGAGGAACTTTATTTATTTTTTAAA
ATTGTTGAACCTCCATTAGAA
Found at i:11795561 original size:131 final size:131
Alignment explanation
Indices: 11795056--11795727 Score: 397
Period size: 131 Copynumber: 5.2 Consensus size: 131
11795046 CAATGAGCCT
* ** * ** * * * * *
11795056 TATTTATTTTTCAAAGTCATTGAACATCTGTTTAAAGGAGCTTTATTTA-TTTTTTAAAATCGTT
1 TATTTATTTTTCAAAATTGTTAAACATCTACTTAAAAGAGCCTTATTTACTTTTCTAAAGTCATT
* * * * * ** * * *
11795120 GAACCTC-CCATTAGAGGAGCCTTAATTACTTTTTCAAAGTTGTTGAGCCTCTATTTAG-AGAAA
66 GAACCTCTGC-TTAAAGAAGCCTTATTTAATTTTTCAAAGTCATTGAACCTCTACTTAGAAG-AG
*
11795183 CTT
129 CTC
* * * * * * *
11795186 TGTTTA-TTTTCTAAAGTTGTTGAACCTCTACTTAGAAGAGCTTTATTTACTTTT-TCAAAGTCG
1 TATTTATTTTTC-AAAATTGTTAAACATCTACTTAAAAGAGCCTTATTTACTTTTCT-AAAGTCA
* * * * * * ** *
11795249 TTGAACCTATACTTGAGGAA-CTTTATTT-ATTTTTCAAAATTGTTGAACCT-TGCTTA-AATGA
64 TTGAACCTCTGCTTAAAGAAGCCTTATTTAATTTTTCAAAGTCATTGAACCTCTACTTAGAA-GA
11795310 GC-C
128 GCTC
* ** * * * * *
11795313 TTATTTACTTTTTCAAAGTTGTTGAGCCA-CTACTTAGATGAGTCTTATTTATTTTTC-AAAGTG
1 -TATTTA-TTTTTCAAAATTGTT-AAACATCTACTTAAAAGAGCCTTATTTACTTTTCTAAAGTC
* * ** * * * * * * *
11795376 GTTGAGCCTCTATTTAGATAAACTTTATTTACTTTTTCAAAGTTC-TTAAACCTCTACTTAGAGG
63 ATTGAACCTCTGCTTAAAGAAGCCTTATTTAATTTTTCAAAG-TCATTGAACCTCTACTTAGAAG
11795440 AGCTC
127 AGCTC
* * * * * *
11795445 TATTTATTTTTCAAAGTTGTTAAACATTTACTTAGAGGAGCTTTATTTACTTTTCTAAAGTTATT
1 TATTTATTTTTCAAAATTGTTAAACATCTACTTAAAAGAGCCTTATTTACTTTTCTAAAGTCATT
* *
11795510 GAATCTCTGCTTAAATG-AGCCTTATTTAATTTTTGAAAGTCATTGAACCTCTACTTAGAAGAGC
66 GAACCTCTGCTTAAA-GAAGCCTTATTTAATTTTTCAAAGTCATTGAACCTCTACTTAGAAGAGC
11795574 -C
130 TC
* * * * * **
11795575 TTATATATTTTTTAAAATCGTTAAGCCTCTGTTTAAAAGAGCCTTATTTACTTTTCTAAAGTCAT
1 -TATTTATTTTTCAAAATTGTTAAACATCTACTTAAAAGAGCCTTATTTACTTTTCTAAAGTCAT
* * * * *
11795640 TGAGCCTCTGTTTAAAGAAGCCTTATTT-ATTTTTCTATAA-TCATTGAGCCTCTACTTAGATGC
65 TGAACCTCTGCTTAAAGAAGCCTTATTTAATTTTTC-A-AAGTCATTGAACCTCTACTTAGAAGA
* *
11795703 TCTT
128 GCTC
11795707 TATTTATTTTTCAAAATTGTT
1 TATTTATTTTTCAAAATTGTT
11795728 GAGCCTCTGT
Statistics
Matches: 423, Mismatches: 93, Indels: 51
0.75 0.16 0.09
Matches are distributed among these distances:
128 31 0.07
129 68 0.16
130 112 0.26
131 207 0.49
132 5 0.01
ACGTcount: A:0.28, C:0.15, G:0.13, T:0.44
Consensus pattern (131 bp):
TATTTATTTTTCAAAATTGTTAAACATCTACTTAAAAGAGCCTTATTTACTTTTCTAAAGTCATT
GAACCTCTGCTTAAAGAAGCCTTATTTAATTTTTCAAAGTCATTGAACCTCTACTTAGAAGAGCT
C
Found at i:11795733 original size:131 final size:128
Alignment explanation
Indices: 11795136--11795812 Score: 463
Period size: 131 Copynumber: 5.2 Consensus size: 128
11795126 CCCATTAGAG
* ** * * * *
11795136 GAGCCTTAATTACTTTTTCAAAGTTGTTGAGCCTCTATTTAG-AGAAACTTTGTTTA-TTTTCTA
1 GAGCCTTATTTA-TTTTTCAAAGTCATTGAACCTCTACTTAGAAG-AGCTTTATTTATTTTTC-A
* * * ** * * *
11795199 AAGTTGTTGAA-CCTCTACTTAGAAGAGCTTTATTTACTTTTTCAAAGTCGTTGAACCTATACTT
63 AAATTGTT-AAGCCTCTACTTAGAGGAGCCTTATTTAC-TTTTCAAAGTTATTGAGCCTCTATTT
* *
11795263 GAG
126 AAA
* * * ** * *
11795266 GAACTTTATTTATTTTTCAAAATTGTTGAACCT-TGCTTA-AATGAGCCTTATTTACTTTTTCAA
1 GAGCCTTATTTATTTTTCAAAGTCATTGAACCTCTACTTAGAA-GAGCTTTATTTA-TTTTTCAA
* * * * * * **
11795329 AGTTGTTGAGCCACTACTTAGATGAGTCTTATTTATTTTTCAAAGTGGTTGAGCCTCTATTTAGA
64 AATTGTTAAGCCTCTACTTAGAGGAGCCTTATTTACTTTTCAAAGTTATTGAGCCTCTATTTA-A
11795394 TA
128 -A
* * * * *
11795396 -AACTTTATTTACTTTTTCAAAGTTC-TTAAACCTCTACTTAGAGGAGCTCTATTTATTTTTCAA
1 GAGCCTTATTTA-TTTTTCAAAG-TCATTGAACCTCTACTTAGAAGAGCTTTATTTATTTTTCAA
* * * * * ** **
11795459 AGTTGTTAAACATTTACTTAGAGGAGCTTTATTTACTTTTCTAAAGTTATTGAATCTCTGCTTAA
64 AATTGTTAAGCCTCTACTTAGAGGAGCCTTATTTACTTTTC-AAAGTTATTGAGCCTCTATTTAA
11795524 A
128 A
* * * *
11795525 TGAGCCTTATTTAATTTTTGAAAGTCATTGAACCTCTACTTAGAAGAGCCTTATATATTTTTTAA
1 -GAGCCTTATTT-ATTTTTCAAAGTCATTGAACCTCTACTTAGAAGAGCTTTATTTATTTTTCAA
* ** * * * *
11795590 AATCGTTAAGCCTCTGTTTAAAAGAGCCTTATTTACTTTTCTAAAGTCATTGAGCCTCTGTTTAA
64 AATTGTTAAGCCTCTACTTAGAGGAGCCTTATTTACTTTTC-AAAGTTATTGAGCCTCTATTTAA
11795655 A
128 A
* * **
11795656 GAAGCCTTATTTATTTTTCTATAA-TCATTGAGCCTCTACTTAGATGCTCTTTATTTATTTTTCA
1 G-AGCCTTATTTATTTTTC-A-AAGTCATTGAACCTCTACTTAGAAGAGCTTTATTTATTTTTCA
* ** * ** ** *
11795720 AAATTGTTGAGCCTCTGTTTATAGGAGTTTTATTTGTTTTTCAAAGTTGTTGAGCCTCTATTTAG
63 AAATTGTTAAGCCTCTACTTAGAGGAGCCTTATTTACTTTTCAAAGTTATTGAGCCTCTATTTA-
11795785 AA
127 AA
* *
11795787 GAG-TTTATTTATTTCTCAAAAGTCAT
1 GAGCCTTATTTATTTTTC-AAAGTCAT
11795813 GAAGCTTTTG
Statistics
Matches: 437, Mismatches: 89, Indels: 43
0.77 0.16 0.08
Matches are distributed among these distances:
128 38 0.09
129 80 0.18
130 101 0.23
131 214 0.49
132 4 0.01
ACGTcount: A:0.27, C:0.15, G:0.14, T:0.44
Consensus pattern (128 bp):
GAGCCTTATTTATTTTTCAAAGTCATTGAACCTCTACTTAGAAGAGCTTTATTTATTTTTCAAAA
TTGTTAAGCCTCTACTTAGAGGAGCCTTATTTACTTTTCAAAGTTATTGAGCCTCTATTTAAA
Found at i:11796975 original size:26 final size:26
Alignment explanation
Indices: 11796920--11796987 Score: 68
Period size: 26 Copynumber: 2.7 Consensus size: 26
11796910 CCTATTGATG
*
11796920 AATTTTTA-AAAATT-TCAAATGATA
1 AATTTTTATAAAATTCTCAAATGAGA
* **
11796944 ACTTTTTATAAAATTCTCAGGTGAGA
1 AATTTTTATAAAATTCTCAAATGAGA
* *
11796970 AATTTTTTTAAATTTCTC
1 AATTTTTATAAAATTCTC
11796988 CCAAATTGTG
Statistics
Matches: 35, Mismatches: 7, Indels: 2
0.80 0.16 0.05
Matches are distributed among these distances:
24 7 0.20
25 6 0.17
26 22 0.63
ACGTcount: A:0.38, C:0.09, G:0.07, T:0.46
Consensus pattern (26 bp):
AATTTTTATAAAATTCTCAAATGAGA
Found at i:11797306 original size:45 final size:48
Alignment explanation
Indices: 11797235--11797336 Score: 147
Period size: 45 Copynumber: 2.2 Consensus size: 48
11797225 TTCCAAAGAG
*
11797235 AAATAAAAGTTTTTTAAATAAACCCAAATGATA-AAAATTTAAAAA-T
1 AAATAAAAGCTTTTTAAATAAACCCAAATGATAGAAAATTTAAAAATT
* *
11797281 AAATAAAA-CTTTTTAAATAAGCCCAAATGGTAGAAAATTTAAAAATT
1 AAATAAAAGCTTTTTAAATAAACCCAAATGATAGAAAATTTAAAAATT
*
11797328 AAAAAAAAG
1 AAATAAAAG
11797337 ATATTTCTAA
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
45 21 0.43
46 20 0.41
47 8 0.16
ACGTcount: A:0.59, C:0.07, G:0.07, T:0.27
Consensus pattern (48 bp):
AAATAAAAGCTTTTTAAATAAACCCAAATGATAGAAAATTTAAAAATT
Found at i:11798368 original size:13 final size:13
Alignment explanation
Indices: 11798333--11798374 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
11798323 AAAAAATTAA
*
11798333 AAAATTTTAAAA-
1 AAAATATTAAAAT
11798345 ATAAA-ATTAAAAT
1 A-AAATATTAAAAT
11798358 AAAATATTAAAAT
1 AAAATATTAAAAT
11798371 AAAA
1 AAAA
11798375 ATTCACATAT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
12 10 0.38
13 16 0.62
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (13 bp):
AAAATATTAAAAT
Found at i:11800922 original size:11 final size:11
Alignment explanation
Indices: 11800908--11800957 Score: 57
Period size: 11 Copynumber: 4.4 Consensus size: 11
11800898 GTATTAAATA
11800908 ATTCTTAATTT
1 ATTCTTAATTT
11800919 ATTCTTAATTTT
1 ATTCTTAA-TTT
11800931 ATT-TTAATTT
1 ATTCTTAATTT
*
11800941 AATATTTTAATTT
1 -AT-TCTTAATTT
11800954 ATTC
1 ATTC
11800958 AAGCAATAAT
Statistics
Matches: 34, Mismatches: 1, Indels: 8
0.79 0.02 0.19
Matches are distributed among these distances:
10 3 0.09
11 15 0.44
12 9 0.26
13 7 0.21
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (11 bp):
ATTCTTAATTT
Found at i:11800997 original size:9 final size:9
Alignment explanation
Indices: 11800985--11801015 Score: 53
Period size: 9 Copynumber: 3.3 Consensus size: 9
11800975 TTTTATTGTT
11800985 AAAATTTAA
1 AAAATTTAA
11800994 AAAATTTAA
1 AAAATTTAA
11801003 AAATATTTAA
1 AAA-ATTTAA
11801013 AAA
1 AAA
11801016 TTATGATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 12 0.57
10 9 0.43
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (9 bp):
AAAATTTAA
Found at i:11801010 original size:10 final size:10
Alignment explanation
Indices: 11800988--11801016 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
11800978 TATTGTTAAA
11800988 ATTTAAAAA-
1 ATTTAAAAAT
11800997 ATTTAAAAAT
1 ATTTAAAAAT
11801007 ATTTAAAAAT
1 ATTTAAAAAT
11801017 TATGATATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
9 9 0.47
10 10 0.53
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (10 bp):
ATTTAAAAAT
Found at i:11801052 original size:28 final size:27
Alignment explanation
Indices: 11800997--11801068 Score: 76
Period size: 28 Copynumber: 2.6 Consensus size: 27
11800987 AATTTAAAAA
*
11800997 ATTTA-AAAATATTTAAAAATTATGAT
1 ATTTATAAAATATTTAAAAATAATGAT
*
11801023 ATTATATAAAATATTTATAAAA-AATTAT
1 ATT-TATAAAATATTTA-AAAATAATGAT
*
11801051 ATTTGTAAAATATATTAA
1 ATTTATAAAATAT-TTAA
11801069 TTATCGAATT
Statistics
Matches: 39, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
26 3 0.08
27 12 0.31
28 20 0.51
29 4 0.10
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (27 bp):
ATTTATAAAATATTTAAAAATAATGAT
Found at i:11804092 original size:15 final size:16
Alignment explanation
Indices: 11804062--11804094 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
11804052 GGCTACATAA
*
11804062 CTTTATTGTTTTTGTT
1 CTTTATTGTGTTTGTT
11804078 CTTTA-TGTGTTTGTT
1 CTTTATTGTGTTTGTT
11804093 CT
1 CT
11804095 ATCAATGTGA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 11 0.69
16 5 0.31
ACGTcount: A:0.06, C:0.09, G:0.15, T:0.70
Consensus pattern (16 bp):
CTTTATTGTGTTTGTT
Found at i:11805102 original size:2 final size:2
Alignment explanation
Indices: 11805095--11805122 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
11805085 TATTGTTTGC
11805095 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
11805123 TAATAAGTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:11805182 original size:23 final size:23
Alignment explanation
Indices: 11805150--11805193 Score: 79
Period size: 23 Copynumber: 1.9 Consensus size: 23
11805140 TACGCCTTAG
11805150 GAAAAAAATAAGATAAAGTATGT
1 GAAAAAAATAAGATAAAGTATGT
*
11805173 GAAAATAATAAGATAAAGTAT
1 GAAAAAAATAAGATAAAGTAT
11805194 ATTATATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.61, C:0.00, G:0.16, T:0.23
Consensus pattern (23 bp):
GAAAAAAATAAGATAAAGTATGT
Found at i:11805982 original size:2 final size:2
Alignment explanation
Indices: 11805977--11806019 Score: 68
Period size: 2 Copynumber: 21.5 Consensus size: 2
11805967 TCTCTCTCTC
* *
11805977 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TG TA TG TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11806019 T
1 T
11806020 CTATCCTCAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11806684 original size:2 final size:2
Alignment explanation
Indices: 11806679--11806711 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
11806669 TCTCTCTCTC
11806679 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11806712 GAGCACAAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11806733 original size:4 final size:4
Alignment explanation
Indices: 11806724--11806777 Score: 65
Period size: 4 Copynumber: 13.8 Consensus size: 4
11806714 GCACAAGTTG
* * * *
11806724 TGTA TGTA TGT- TGTA TGCA TGTA TATA TATA TATA TGTA TGTA TGTA
1 TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA TGTA
11806771 TGTA TGT
1 TGTA TGT
11806778 CTTTAGTGGT
Statistics
Matches: 45, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
3 3 0.07
4 42 0.93
ACGTcount: A:0.28, C:0.02, G:0.20, T:0.50
Consensus pattern (4 bp):
TGTA
Found at i:11813071 original size:144 final size:142
Alignment explanation
Indices: 11812763--11813246 Score: 439
Period size: 144 Copynumber: 3.4 Consensus size: 142
11812753 ATGCCCCAGG
* * *
11812763 AAGGGCAAAATTATCAAAATACCCTTATAAGGGTATTTTCATAATTTGACCTTTC-CAAGCTTGA
1 AAGGGTAAAATTATCAAAATACTCTTAT-AGGGTATTTTCATAATTTGA-CTTTCACAAGCTCGA
* *
11812827 ATTTTTATGAAACCTTTTAG-TTCTTAATTTTATAATATTTTATAATTTTTGAAGCATTTACAAT
64 ATTTTTATGAAA-CTTTTAGATT-TTAATTTTATAATATTTCATAATTTTTGAAG-ATTTACAAC
*
11812891 CACAACAGTACCCTGAG
126 CACAACAGTACCCTGAA
*
11812908 AAGGGTAAAATTATCAAAATAC-CATTTTAGAGGTATTTTCATAATTTGACTTTCACAAGCTCGA
1 AAGGGTAAAATTATCAAAATACTC-TTATAG-GGTATTTTCATAATTTGACTTTCACAAGCTCGA
* * *
11812972 ATTTTTGTGAAACTTTTAGATTTTAATTTTATAATATTTCATGATTTTT-AGTGAGTTTGA-AAC
64 ATTTTTATGAAACTTTTAGATTTTAATTTTATAATATTTCATAATTTTTGA-AGA-TTT-ACAAC
*
11813035 CACAGCAGTACCCTGAA
126 CACAACAGTACCCTGAA
* * ** * *
11813052 AAGTGTGAAATTA-CTAAAATACTCTTATAGGGTATTTTTGTAATTTGACCTTCACTAGCTC-AT
1 AAGGGTAAAATTATC-AAAATACTCTTATAGGGTATTTTCATAATTTGACTTTCACAAGCTCGA-
* * * * * ** * *
11813115 AATTTCATGCAACTTTTCATATCTTAATTTTATAATATTTCATAA-TTTTGGTGCA-TTAAAATC
64 ATTTTTATGAAACTTTT-AGATTTTAATTTTATAATATTTCATAATTTTTGAAG-ATTTACAACC
* ** *
11813178 ATAGTAGTACCCTAGGA
127 ACAACAGTACCCT-GAA
* * * * *
11813195 AA-GGTAAAATTACCAAAATACCCTTATAGTGGCATTTTCGTAATTTGGCTTT
1 AAGGGTAAAATTATCAAAATACTCTTATAG-GGTATTTTCATAATTTGACTTT
11813247 TTTGAGTTTG
Statistics
Matches: 286, Mismatches: 36, Indels: 36
0.80 0.10 0.10
Matches are distributed among these distances:
141 1 0.00
142 39 0.14
143 72 0.25
144 109 0.38
145 65 0.23
ACGTcount: A:0.34, C:0.14, G:0.13, T:0.40
Consensus pattern (142 bp):
AAGGGTAAAATTATCAAAATACTCTTATAGGGTATTTTCATAATTTGACTTTCACAAGCTCGAAT
TTTTATGAAACTTTTAGATTTTAATTTTATAATATTTCATAATTTTTGAAGATTTACAACCACAA
CAGTACCCTGAA
Found at i:11813232 original size:143 final size:141
Alignment explanation
Indices: 11812769--11813306 Score: 483
Period size: 143 Copynumber: 3.7 Consensus size: 141
11812759 CAGGAAGGGC
* * * * *
11812769 AAAATTATCAAAATACCCTTATAAGGGTATTTTCATAATTTGACCTTTC-CAAGCTTGAATTTTT
1 AAAATTACCAAAATACCCTTAT-AGGGTATTTTCGTAATTTGACC-TTCACAAGCTCGAAATTTC
* * ** * *
11812833 ATGAAACCTTTTAGTTCTTAATTTTATAATATTTTATAATTTTTGAAGCATTTACAATCACAACA
64 ATGAAA-CTTTTAGATCTTAATTTTATAATATTTCATAA-TTTTGGTGCATTTAAAATCACAGCA
*
11812898 GTACCCTGAGAAGGGT
127 GTACCCTG-GAAAGGT
* * * * * * **
11812914 AAAATTATCAAAATACCATTTTAGAGGTATTTTCATAATTTGACTTTCACAAGCTCGAATTTTTG
1 AAAATTACCAAAATACCCTTATAG-GGTATTTTCGTAATTTGACCTTCACAAGCTCGAAATTTCA
* * * * *
11812979 TGAAACTTTTAGATTTTAATTTTATAATATTTCATGATTTTTAGTG-AGTTTGAAACCACAGCAG
65 TGAAACTTTTAGATCTTAATTTTATAATATTTCAT-AATTTTGGTGCA-TTTAAAATCACAGCAG
*
11813043 TACCCTGAAAAGTGT
128 TACCCTGGAAAG-GT
* * * * *
11813058 GAAATTACTAAAATACTCTTATAGGGTATTTTTGTAATTTGACCTTCACTAGCTC-ATAATTTCA
1 AAAATTACCAAAATACCCTTATAGGGTATTTTCGTAATTTGACCTTCACAAGCTCGA-AATTTCA
* * * *
11813122 TGCAACTTTTCATATCTTAATTTTATAATATTTCATAATTTTGGTGCA-TTAAAATCATAGTAGT
65 TGAAACTTTT-AGATCTTAATTTTATAATATTTCATAATTTTGGTGCATTTAAAATCACAGCAGT
11813186 ACCCTAGGAAAGGT
129 ACCCT-GGAAAGGT
* * * **** * *
11813200 AAAATTACCAAAATACCCTTATAGTGGCATTTTCGTAATTTGGCTTTTTTGAGTTTGAAATTTCA
1 AAAATTACCAAAATACCCTTATAG-GGTATTTTCGTAATTTGACCTTCACAAGCTCGAAATTTCA
* * *
11813265 TGAAATTTTTCAGATCTCAATTTCATAATAATTT-ATAATTTT
65 TGAAACTTTT-AGATCTTAATTTTATAAT-ATTTCATAATTTT
11813307 TGATCTTTTA
Statistics
Matches: 322, Mismatches: 59, Indels: 26
0.79 0.14 0.06
Matches are distributed among these distances:
142 41 0.13
143 117 0.36
144 105 0.33
145 59 0.18
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (141 bp):
AAAATTACCAAAATACCCTTATAGGGTATTTTCGTAATTTGACCTTCACAAGCTCGAAATTTCAT
GAAACTTTTAGATCTTAATTTTATAATATTTCATAATTTTGGTGCATTTAAAATCACAGCAGTAC
CCTGGAAAGGT
Found at i:11813678 original size:15 final size:14
Alignment explanation
Indices: 11813658--11813716 Score: 55
Period size: 15 Copynumber: 4.0 Consensus size: 14
11813648 GAGGCTTTTG
*
11813658 AAAAAAAAAGCAAAA
1 AAAAAAAAAAC-AAA
11813673 AAAAAAAAAACACAA
1 AAAAAAAAAACA-AA
* *
11813688 AGAAAAGAAACAAA
1 AAAAAAAAAACAAA
*
11813702 GAAAAAAAAATCAAA
1 -AAAAAAAAAACAAA
11813717 GGTAAGATAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
14 3 0.08
15 33 0.92
ACGTcount: A:0.83, C:0.08, G:0.07, T:0.02
Consensus pattern (14 bp):
AAAAAAAAAACAAA
Found at i:11813693 original size:13 final size:12
Alignment explanation
Indices: 11813658--11813709 Score: 56
Period size: 11 Copynumber: 4.5 Consensus size: 12
11813648 GAGGCTTTTG
*
11813658 AAAAAA-AAAGC
1 AAAAAACAAAGA
11813669 AAAAAA-AAA-A
1 AAAAAACAAAGA
*
11813679 AAAACACAAAGA
1 AAAAAACAAAGA
11813691 AAAGAAACAAAGA
1 AAA-AAACAAAGA
11813704 AAAAAA
1 AAAAAA
11813710 AATCAAAGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
10 5 0.14
11 12 0.34
12 7 0.20
13 11 0.31
ACGTcount: A:0.85, C:0.08, G:0.08, T:0.00
Consensus pattern (12 bp):
AAAAAACAAAGA
Found at i:11816705 original size:436 final size:438
Alignment explanation
Indices: 11815889--11816758 Score: 1690
Period size: 436 Copynumber: 2.0 Consensus size: 438
11815879 ATGTGGCCTC
11815889 TTTATATTTAAACCTGATTCCTAAATTTATATTTGATAGTCATTTTGCATATGTTTCATTTTTTT
1 TTTATATTTAAACCTGATTCCTAAATTTATATTTGATAGTCATTTTGCATATGTTTCATTTTTTT
11815954 TAAGATTAATGTCTTCATTTGTAATGCATATATATATATATATGTGTGTGTGTTTGCTCTAGTTA
66 TAAGATTAATGTCTTCATTTGTAATGCA-ATATATATATATA-GTGTGTGTGTTTGCTCTAGTTA
11816019 TGGATGTCTAATATTAATTATATTATATTATTTTTTTACACCAAAAGTTTTCTTAAAAATTTTAG
129 TGGATGTCTAATATTAATTATATTATATTATTTTTTTACACCAAAAGTTTTCTTAAAAATTTTAG
11816084 TTTTGAATAAATAAAATTAAAATAGCATTTCATGAAATATAATTAATTAGTACTTTGCCTAGATG
194 TTTTGAATAAATAAAATTAAAATAGCATTTCATGAAATATAATTAATTAGTACTTTGCCTAGATG
11816149 TTAGAGAGTCATCAATAATTATCATTTACAAAGAATGTTATTTTATTTTTAGAAGGAATGTTATG
259 TTAGAGAGTCATCAATAATTATCATTTACAAAGAATGTTATTTTATTTTTAGAAGGAATGTTATG
11816214 ATAAATCTTAAATGGAAAGACTATTTTGAATTCTACCTTTTATATCAGAGACTTCAAAGGTATTT
324 ATAAATCTTAAATGGAAAGACTATTTTGAATTCTACCTTTTATATCAGAGACTTCAAAGGTATTT
11816279 CTTTAATTTGAAGATTTTCTTAATATTCCTCAATAATTTTTTTTTCTAAA
389 CTTTAATTTGAAGATTTTCTTAATATTCCTCAATAATTTTTTTTTCTAAA
*
11816329 TTTATATTTAAACTTGATTCCTAAATTTATATTTGATAGTCATTTTGCATATGTTTCATTTTTTT
1 TTTATATTTAAACCTGATTCCTAAATTTATATTTGATAGTCATTTTGCATATGTTTCATTTTTTT
11816394 TAAGATTAATGTCTTCATTTGTAATGC-ATATATATATATA-TGTGTGTGTTTGCTCTAGTTATG
66 TAAGATTAATGTCTTCATTTGTAATGCAATATATATATATAGTGTGTGTGTTTGCTCTAGTTATG
11816457 GATGTCTAATATTAATTATATTATATTATTTTTTTACACCAAAAGTTTTCTTAAAAATTTTAGTT
131 GATGTCTAATATTAATTATATTATATTATTTTTTTACACCAAAAGTTTTCTTAAAAATTTTAGTT
11816522 TTGAATAAATAAAATTAAAATAGCATTTCATGAAATATAATTAATTAGTACTTTGCCTAGATGTT
196 TTGAATAAATAAAATTAAAATAGCATTTCATGAAATATAATTAATTAGTACTTTGCCTAGATGTT
11816587 AGAGAGTCATCAATAATTATCATTTACAAAGAATGTTATTTTATTTTTAGAAGGAATGTTATGAT
261 AGAGAGTCATCAATAATTATCATTTACAAAGAATGTTATTTTATTTTTAGAAGGAATGTTATGAT
*
11816652 AAATCTTAAATGGAAAGACTATTTTGAATTCTGCCTTTTATATCAGAGACTTCAAAGGTATTTCT
326 AAATCTTAAATGGAAAGACTATTTTGAATTCTACCTTTTATATCAGAGACTTCAAAGGTATTTCT
11816717 TTAATTTGAAGATTTTCTTAATATTCCTCAATAATTTTTTTT
391 TTAATTTGAAGATTTTCTTAATATTCCTCAATAATTTTTTTT
11816759 CTTACAAACA
Statistics
Matches: 428, Mismatches: 2, Indels: 4
0.99 0.00 0.01
Matches are distributed among these distances:
436 324 0.76
438 13 0.03
440 91 0.21
ACGTcount: A:0.34, C:0.09, G:0.11, T:0.46
Consensus pattern (438 bp):
TTTATATTTAAACCTGATTCCTAAATTTATATTTGATAGTCATTTTGCATATGTTTCATTTTTTT
TAAGATTAATGTCTTCATTTGTAATGCAATATATATATATAGTGTGTGTGTTTGCTCTAGTTATG
GATGTCTAATATTAATTATATTATATTATTTTTTTACACCAAAAGTTTTCTTAAAAATTTTAGTT
TTGAATAAATAAAATTAAAATAGCATTTCATGAAATATAATTAATTAGTACTTTGCCTAGATGTT
AGAGAGTCATCAATAATTATCATTTACAAAGAATGTTATTTTATTTTTAGAAGGAATGTTATGAT
AAATCTTAAATGGAAAGACTATTTTGAATTCTACCTTTTATATCAGAGACTTCAAAGGTATTTCT
TTAATTTGAAGATTTTCTTAATATTCCTCAATAATTTTTTTTTCTAAA
Found at i:11817409 original size:29 final size:29
Alignment explanation
Indices: 11817365--11817428 Score: 110
Period size: 29 Copynumber: 2.2 Consensus size: 29
11817355 GAAGTTGACC
*
11817365 CCAATATTGTAATAGCTCTTAATGCCGAT
1 CCAATGTTGTAATAGCTCTTAATGCCGAT
*
11817394 CCAATGTTGTAGTAGCTCTTAATGCCGAT
1 CCAATGTTGTAATAGCTCTTAATGCCGAT
11817423 CCAATG
1 CCAATG
11817429 GATGCCCTCA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33
Consensus pattern (29 bp):
CCAATGTTGTAATAGCTCTTAATGCCGAT
Found at i:11824913 original size:15 final size:16
Alignment explanation
Indices: 11824883--11824920 Score: 53
Period size: 15 Copynumber: 2.5 Consensus size: 16
11824873 AAAACTATAA
*
11824883 AATATAAATCAATTTT
1 AATAAAAATCAATTTT
11824899 AATAAAAAT-AATTTT
1 AATAAAAATCAATTTT
11824914 AA-AAAAA
1 AATAAAAA
11824921 CATTATTAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 5 0.24
15 8 0.38
16 8 0.38
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (16 bp):
AATAAAAATCAATTTT
Found at i:11826461 original size:2 final size:2
Alignment explanation
Indices: 11826454--11826492 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
11826444 GCAGACCCAA
11826454 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG A
11826493 ATGGGGTCAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.49, T:0.00
Consensus pattern (2 bp):
AG
Found at i:11837675 original size:27 final size:26
Alignment explanation
Indices: 11837636--11837698 Score: 92
Period size: 27 Copynumber: 2.3 Consensus size: 26
11837626 TAATTAGTAC
11837636 ATAAGATTA-AAATAAAATAAAATAAA
1 ATAA-ATTATAAATAAAATAAAATAAA
11837662 ATAATATTATAAATAAAATAAAATAAA
1 ATAA-ATTATAAATAAAATAAAATAAA
11837689 ATTAAATTAT
1 A-TAAATTAT
11837699 TTTATTTTAT
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
26 8 0.24
27 23 0.68
28 3 0.09
ACGTcount: A:0.68, C:0.00, G:0.02, T:0.30
Consensus pattern (26 bp):
ATAAATTATAAATAAAATAAAATAAA
Found at i:11837676 original size:22 final size:22
Alignment explanation
Indices: 11837643--11837692 Score: 77
Period size: 22 Copynumber: 2.4 Consensus size: 22
11837633 TACATAAGAT
11837643 TAAAA-TA-AAATAAAATAAAA
1 TAAAATTATAAATAAAATAAAA
*
11837663 TAATATTATAAATAAAATAAAA
1 TAAAATTATAAATAAAATAAAA
11837685 TAAAATTA
1 TAAAATTA
11837693 AATTATTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
20 4 0.15
21 2 0.08
22 20 0.77
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (22 bp):
TAAAATTATAAATAAAATAAAA
Found at i:11837697 original size:5 final size:5
Alignment explanation
Indices: 11837643--11837695 Score: 70
Period size: 5 Copynumber: 10.2 Consensus size: 5
11837633 TACATAAGAT
* *
11837643 TAAAA TAAAA TAAAA TAAAA TAATAT TATAAA TAAAA TAAAA TAAAA TTAAA
1 TAAAA TAAAA TAAAA TAAAA TAA-AA TA-AAA TAAAA TAAAA TAAAA TAAAA
11837695 T
1 T
11837696 TATTTTATTT
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
5 36 0.84
6 6 0.14
7 1 0.02
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (5 bp):
TAAAA
Found at i:11837786 original size:17 final size:18
Alignment explanation
Indices: 11837766--11837803 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
11837756 AAATTATTTT
*
11837766 TTTAAA-AATTTATATAA
1 TTTAAATAATTGATATAA
*
11837783 TTTAAATTATTGATATAA
1 TTTAAATAATTGATATAA
11837801 TTT
1 TTT
11837804 TTAATGATAT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.45, C:0.00, G:0.03, T:0.53
Consensus pattern (18 bp):
TTTAAATAATTGATATAA
Found at i:11847752 original size:301 final size:300
Alignment explanation
Indices: 11847183--11847781 Score: 697
Period size: 301 Copynumber: 2.0 Consensus size: 300
11847173 GATTTTAATG
* * * * * * *
11847183 AGTGCTCGAGGATAAAGGTATTAGTGATGTGATTCATGTTGTTTTTCACTTAGAGCACCTTGTTT
1 AGTGCTCGAGGATAAAGGTATTAGTGATGTGAGTCATGATGTTTTTCACCTAAAGCACCCTATCT
* * * * *
11847248 CACATTTTGAAAAATCCCTCGTAGTTGATGAGGTAGAGGACATGGATCTGAATGAATATGATGAT
66 CACAATTTGAAAAATCCCTCATAGTTCATGAGGTAGAAGACATGGATCTGAATGAAGATGATGAT
** * * * *
11847313 GAGATATCATAGTCTGTATTTGTTAATTTGCACCACCTTCTAATGTCAAGCCTTTAGTTGATTCT
131 GAGATATCATAGTCCCTACTTGTCAATTTGCACCACCTTCTAAGGTCAAGCCTTTAGTTAATTCT
* * *
11847378 AACACTCTCCCTAAAGTGATTAGACCTTCAAATCTAGATTCATTGACTTTTGAGAAGTTTAATTT
196 AACACTCTCCCTAAAGTGATTAAACCTTCAAATCTAGATTCATCGACTTTTAAGAAGTTTAATTT
* *
11847443 GATCATGCTTA-AAAGGGTGATGGGTTAGTTTTATTTGATA
261 GATCATGCTTATAAA-GGTGATGGGTCAGTTGTATTTGATA
* *
11847483 AGTGCTCGAGGATAGAGGTAGTTAGTGATATTG-GTCATGATGTTTTTCACCTAAAGCACCCTAT
1 AGTGCTCGAGGATAAAGGTA-TTAGTGAT-GTGAGTCATGATGTTTTTCACCTAAAGCACCCTAT
* * *
11847547 CTCATAATTTGAAGAATCCC-CTATAG-TCATTGAGGTAGAAGACATGGAT-TTAAGTGAAGATG
64 CTCACAATTTGAAAAATCCCTC-ATAGTTCA-TGAGGTAGAAGACATGGATCTGAA-TGAAGATG
* * * * * **
11847609 ATGATGAGATATTATAGTCCCTACTTGTCGATTTGCACCACTTTTTAGGGTTGAGCCTTTAGTTA
126 ATGATGAGATATCATAGTCCCTACTTGTCAATTTGCACCACCTTCTAAGGTCAAGCCTTTAGTTA
* * ** * * *
11847674 ATTCTAACACTTTCCTTGCAGTTATTAAACTTTCAAATCTAGATTCATCGATTTTTAAGAA-TTT
191 ATTCTAACACTCTCCCTAAAGTGATTAAACCTTCAAATCTAGATTCATCGACTTTTAAGAAGTTT
* *
11847738 CAATTTGTTCATGCTTATAAAGTTGATGGGTCAGTTGTATTTGA
256 -AATTTGATCATGCTTATAAAGGTGATGGGTCAGTTGTATTTGA
11847782 AGGGATATGT
Statistics
Matches: 248, Mismatches: 44, Indels: 13
0.81 0.14 0.04
Matches are distributed among these distances:
300 28 0.11
301 215 0.87
302 5 0.02
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.37
Consensus pattern (300 bp):
AGTGCTCGAGGATAAAGGTATTAGTGATGTGAGTCATGATGTTTTTCACCTAAAGCACCCTATCT
CACAATTTGAAAAATCCCTCATAGTTCATGAGGTAGAAGACATGGATCTGAATGAAGATGATGAT
GAGATATCATAGTCCCTACTTGTCAATTTGCACCACCTTCTAAGGTCAAGCCTTTAGTTAATTCT
AACACTCTCCCTAAAGTGATTAAACCTTCAAATCTAGATTCATCGACTTTTAAGAAGTTTAATTT
GATCATGCTTATAAAGGTGATGGGTCAGTTGTATTTGATA
Found at i:11850728 original size:16 final size:15
Alignment explanation
Indices: 11850696--11850752 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
11850686 CTTGTCCTTC
* *
11850696 TTTTTCTTGTTATTT
1 TTTTTCTTTTTAATT
11850711 TTTTTCTTTTTACATT
1 TTTTTCTTTTTA-ATT
11850727 TTTTTCTTATTT-ATT
1 TTTTTCTT-TTTAATT
11850742 TCATTTTCTTT
1 T--TTTTCTTT
11850753 CCCTTTTATT
Statistics
Matches: 36, Mismatches: 2, Indels: 7
0.80 0.04 0.16
Matches are distributed among these distances:
15 15 0.42
16 11 0.31
17 10 0.28
ACGTcount: A:0.11, C:0.11, G:0.02, T:0.77
Consensus pattern (15 bp):
TTTTTCTTTTTAATT
Found at i:11856096 original size:37 final size:37
Alignment explanation
Indices: 11856042--11856129 Score: 133
Period size: 37 Copynumber: 2.4 Consensus size: 37
11856032 TGACACTACC
11856042 ATTAAGATGTGCATGAGATGGACTGCATTTACTATCT
1 ATTAAGATGTGCATGAGATGGACTGCATTTACTATCT
* * *
11856079 CTTAAGATGTG-ATTGAGATGGACTGTATTTATTATCT
1 ATTAAGATGTGCA-TGAGATGGACTGCATTTACTATCT
11856116 ATTAAGATGTGCAT
1 ATTAAGATGTGCAT
11856130 AAAACAAAAT
Statistics
Matches: 45, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
36 1 0.02
37 43 0.96
38 1 0.02
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.39
Consensus pattern (37 bp):
ATTAAGATGTGCATGAGATGGACTGCATTTACTATCT
Found at i:11858190 original size:92 final size:89
Alignment explanation
Indices: 11858033--11858208 Score: 307
Period size: 92 Copynumber: 1.9 Consensus size: 89
11858023 TATAAAATAT
11858033 ATGTATGGCGTGCATGAGGAATACAATATATAAAATATATATACATGATAATGAAAGATGAATGA
1 ATGTATGGCGTGCATGAGGAATACAATATATAAAATATATATACATGATAATGAAAGATGAATGA
11858098 AAATGTAAATGTAAATGCATGAAAAAA
66 AAA---AAATGTAAATGCATGAAAAAA
* *
11858125 ATGTATGGTGTGCATGAGGAATACGATATATAAAATATATATACATGATAATGAAAGATGAATGA
1 ATGTATGGCGTGCATGAGGAATACAATATATAAAATATATATACATGATAATGAAAGATGAATGA
11858190 AAAAAATGTAAATGCATGA
66 AAAAAATGTAAATGCATGA
11858209 CAATTTAATA
Statistics
Matches: 82, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
89 16 0.20
92 66 0.80
ACGTcount: A:0.49, C:0.05, G:0.19, T:0.27
Consensus pattern (89 bp):
ATGTATGGCGTGCATGAGGAATACAATATATAAAATATATATACATGATAATGAAAGATGAATGA
AAAAAATGTAAATGCATGAAAAAA
Found at i:11858363 original size:14 final size:14
Alignment explanation
Indices: 11858337--11858575 Score: 96
Period size: 13 Copynumber: 18.1 Consensus size: 14
11858327 GTGGTTAATG
11858337 TTTAGGG-TTAGGT
1 TTTAGGGTTTAGGT
*
11858350 TTTAGGATTTAGGT
1 TTTAGGGTTTAGGT
* * *
11858364 TTTGGGGTTTGGGG
1 TTTAGGGTTTAGGT
*
11858378 TCTAGGGTTTAAGG-
1 TTTAGGGTTT-AGGT
* *
11858392 -TTAGGTTTTAGAT
1 TTTAGGGTTTAGGT
11858405 TTT-GGGTTTAGG-
1 TTTAGGGTTTAGGT
* *
11858417 GTTA-GGTTTATGT
1 TTTAGGGTTTAGGT
* *
11858430 TTTTGGTTTTAGGT
1 TTTAGGGTTTAGGT
* * *
11858444 TTTAAGGTTAAAG-
1 TTTAGGGTTTAGGT
*
11858457 TTTA-GGTTTAGGG
1 TTTAGGGTTTAGGT
* **
11858470 TTTAGGGCTTA-CA
1 TTTAGGGTTTAGGT
* *
11858483 TTTAAGGTTAAGG-
1 TTTAGGGTTTAGGT
* *
11858496 TTTAGGGTCTAAG-
1 TTTAGGGTTTAGGT
* *
11858509 TTTAGGATTT-GGG
1 TTTAGGGTTTAGGT
*
11858522 TTTA-GATTTAGG-
1 TTTAGGGTTTAGGT
*
11858534 TTTAGGGTTTTGG-
1 TTTAGGGTTTAGGT
* *
11858547 TTTAAGGTCTAGG-
1 TTTAGGGTTTAGGT
*
11858560 TTTAGGGTTTGGGT
1 TTTAGGGTTTAGGT
11858574 TT
1 TT
11858576 GTATGGGGAA
Statistics
Matches: 164, Mismatches: 48, Indels: 27
0.69 0.20 0.11
Matches are distributed among these distances:
12 27 0.16
13 87 0.53
14 48 0.29
15 2 0.01
ACGTcount: A:0.18, C:0.02, G:0.33, T:0.47
Consensus pattern (14 bp):
TTTAGGGTTTAGGT
Found at i:11858365 original size:26 final size:25
Alignment explanation
Indices: 11858336--11858575 Score: 115
Period size: 26 Copynumber: 9.2 Consensus size: 25
11858326 AGTGGTTAAT
*
11858336 GTTTAGGGTTAGGTTTTAGGATTTAG
1 GTTTAGGGTTAGG-TTTAGGGTTTAG
* * *
11858362 GTTTTGGGGTTTGGGGTCTAGGGTTTAAG
1 G-TTTAGGG-TT-AGGTTTAGGGTTT-AG
* * *
11858391 G-TTAGGTTTTAGATTTTGGGTTTAG
1 GTTTAGG-GTTAGGTTTAGGGTTTAG
* * * * *
11858416 GGTTAGGTTTATGTTTTTGGTTTTAG
1 GTTTAGGGTTA-GGTTTAGGGTTTAG
* *
11858442 GTTTTAAGGTTAAAGTTTA-GGTTTAGG
1 G-TTTAGGGTT-AGGTTTAGGGTTTA-G
** * *
11858469 GTTTAGGGCTTACATTTAAGGTTAAG
1 GTTTAGGG-TTAGGTTTAGGGTTTAG
* * *
11858495 GTTTAGGGTCTAAGTTTAGGATTTGG
1 GTTTAGGGT-TAGGTTTAGGGTTTAG
** *
11858521 GTTTAGATTTAGGTTTAGGGTTTTG
1 GTTTAGGGTTAGGTTTAGGGTTTAG
* *
11858546 GTTTAAGGTCTAGGTTTAGGGTTTGG
1 GTTTAGGGT-TAGGTTTAGGGTTTAG
11858572 GTTT
1 GTTT
11858576 GTATGGGGAA
Statistics
Matches: 162, Mismatches: 38, Indels: 28
0.71 0.17 0.12
Matches are distributed among these distances:
25 27 0.17
26 89 0.55
27 30 0.19
28 11 0.07
29 5 0.03
ACGTcount: A:0.17, C:0.02, G:0.34, T:0.47
Consensus pattern (25 bp):
GTTTAGGGTTAGGTTTAGGGTTTAG
Found at i:11858473 original size:7 final size:7
Alignment explanation
Indices: 11858336--11858575 Score: 98
Period size: 7 Copynumber: 36.6 Consensus size: 7
11858326 AGTGGTTAAT
11858336 GTTTAGG
1 GTTTAGG
11858343 G-TTAGG
1 GTTTAGG
*
11858349 TTTTAGG
1 GTTTAGG
*
11858356 ATTTAGG
1 GTTTAGG
* *
11858363 TTTTGGG
1 GTTTAGG
*
11858370 GTTTGGG
1 GTTTAGG
*
11858377 GTCTAGG
1 GTTTAGG
*
11858384 GTTTAAG
1 GTTTAGG
11858391 G-TTAGG
1 GTTTAGG
*
11858397 TTTTA-G
1 GTTTAGG
* *
11858403 ATTTTGG
1 GTTTAGG
11858410 GTTTAGG
1 GTTTAGG
11858417 G-TTA-G
1 GTTTAGG
*
11858422 GTTTATG
1 GTTTAGG
* *
11858429 TTTTTGG
1 GTTTAGG
*
11858436 TTTTAGG
1 GTTTAGG
* *
11858443 TTTTAAG
1 GTTTAGG
**
11858450 G-TTAAA
1 GTTTAGG
11858456 GTTTA-G
1 GTTTAGG
11858462 GTTTAGG
1 GTTTAGG
11858469 GTTTAGG
1 GTTTAGG
* *
11858476 GCTTA-C
1 GTTTAGG
* *
11858482 ATTTAAG
1 GTTTAGG
*
11858489 G-TTAAG
1 GTTTAGG
11858495 GTTTAGG
1 GTTTAGG
* *
11858502 GTCTA-A
1 GTTTAGG
11858508 GTTTAGG
1 GTTTAGG
*
11858515 ATTT-GG
1 GTTTAGG
11858521 GTTTA-G
1 GTTTAGG
*
11858527 ATTTA-G
1 GTTTAGG
11858533 GTTTAGG
1 GTTTAGG
*
11858540 GTTT-TG
1 GTTTAGG
*
11858546 GTTTAAG
1 GTTTAGG
*
11858553 GTCTA-G
1 GTTTAGG
11858559 GTTTAGG
1 GTTTAGG
11858566 GTTT-GG
1 GTTTAGG
11858572 GTTT
1 GTTT
11858576 GTATGGGGAA
Statistics
Matches: 177, Mismatches: 42, Indels: 29
0.71 0.17 0.12
Matches are distributed among these distances:
5 2 0.01
6 73 0.41
7 102 0.58
ACGTcount: A:0.17, C:0.02, G:0.34, T:0.47
Consensus pattern (7 bp):
GTTTAGG
Found at i:11858550 original size:19 final size:19
Alignment explanation
Indices: 11858336--11858575 Score: 101
Period size: 19 Copynumber: 12.2 Consensus size: 19
11858326 AGTGGTTAAT
* *
11858336 GTTTAGGGTTAGGTTTTAG
1 GTTTAGGTTTAGGGTTTAG
* *
11858355 GATTTAGGTTTTGGGGTTTGGG
1 G-TTTAGG-TTTAGGGTTT-AG
* *
11858377 GTCTAGGGTTTAAGG-TTAG
1 GTTTA-GGTTTAGGGTTTAG
* *
11858396 GTTTTAGATTTTGGGTTTAG
1 G-TTTAGGTTTAGGGTTTAG
* * * *
11858416 GGTTAGGTTTATGTTTTTG
1 GTTTAGGTTTAGGGTTTAG
* * *
11858435 GTTTTAGGTTTTAAGGTTAAA
1 G-TTTAGG-TTTAGGGTTTAG
11858456 GTTTAGGTTTAGGGTTTAGG
1 GTTTAGGTTTAGGGTTTA-G
* ** * *
11858476 GCTTACATTTAAGGTTAAG
1 GTTTAGGTTTAGGGTTTAG
* *
11858495 GTTTAGGGTCTA-AGTTTAG
1 GTTTA-GGTTTAGGGTTTAG
* *
11858514 GATTTGGGTTTA-GATTTAG
1 G-TTTAGGTTTAGGGTTTAG
*
11858533 GTTTAGGGTTT-TGGTTTAAG
1 GTTTA-GGTTTAGGGTTT-AG
* *
11858553 GTCTAGGTTTAGGGTTTGG
1 GTTTAGGTTTAGGGTTTAG
11858572 GTTT
1 GTTT
11858576 GTATGGGGAA
Statistics
Matches: 158, Mismatches: 48, Indels: 30
0.67 0.20 0.13
Matches are distributed among these distances:
18 3 0.02
19 71 0.45
20 57 0.36
21 23 0.15
22 4 0.03
ACGTcount: A:0.17, C:0.02, G:0.34, T:0.47
Consensus pattern (19 bp):
GTTTAGGTTTAGGGTTTAG
Found at i:11862939 original size:26 final size:26
Alignment explanation
Indices: 11862899--11862954 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
11862889 CTTAAACCAT
*
11862899 GCTAAATAAAAGTTTTCTCAATTCAC
1 GCTAAATAAAAGTTTTCTCAAATCAC
* * *
11862925 GCTAAGTAAACGTTTTCTCAAATCAT
1 GCTAAATAAAAGTTTTCTCAAATCAC
11862951 GCTA
1 GCTA
11862955 TGCTTATTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.36, C:0.20, G:0.11, T:0.34
Consensus pattern (26 bp):
GCTAAATAAAAGTTTTCTCAAATCAC
Found at i:11865563 original size:62 final size:62
Alignment explanation
Indices: 11865466--11865625 Score: 230
Period size: 62 Copynumber: 2.6 Consensus size: 62
11865456 ATTGACAATC
* * * *
11865466 AATTATGGTATTTCTTTTAATTAAATGCCTTAATTGAGTAGTGTTGATATTTAAAAGTAGGA
1 AATTATGGTATTTCTTTTAATTAAATGCCATAATTGAGTAATGTTAATATTTAAAAGTAAGA
* * * *
11865528 AATTATGATGTTTCTTTTAACTAAATGCCATAATTGAGTAATGTTAATATTTAAAAGTAAGC
1 AATTATGGTATTTCTTTTAATTAAATGCCATAATTGAGTAATGTTAATATTTAAAAGTAAGA
* *
11865590 AATTATGGCATTTATTTTAATTAAATGCCATAATTG
1 AATTATGGTATTTCTTTTAATTAAATGCCATAATTG
11865626 CATATAGTTA
Statistics
Matches: 85, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
62 85 1.00
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.42
Consensus pattern (62 bp):
AATTATGGTATTTCTTTTAATTAAATGCCATAATTGAGTAATGTTAATATTTAAAAGTAAGA
Found at i:11865652 original size:62 final size:62
Alignment explanation
Indices: 11865465--11865674 Score: 183
Period size: 62 Copynumber: 3.4 Consensus size: 62
11865455 AATTGACAAT
* * * * * * * *
11865465 CAATTATGGTATTTCTTTTAATTAAATGCCTTAATTGAGTAGTGTTGATATTTAAAAGTAGG
1 CAATTATGGCACTACTTTTAATTAAATGCCATAATTGAGTAATGTTAATATTTAAAAGCAAG
* **** * * *
11865527 AAATTATGATGTTTCTTTTAACTAAATGCCATAATTGAGTAATGTTAATATTTAAAAGTAAG
1 CAATTATGGCACTACTTTTAATTAAATGCCATAATTGAGTAATGTTAATATTTAAAAGCAAG
* * * * *
11865589 CAATTATGGCATTTA-TTTTAATTAAATGCCATAATTGCA-T-ATAGTTATTTTTTATATGCAAG
1 CAATTATGGCA-CTACTTTTAATTAAATGCCATAATTG-AGTAAT-GTTAATATTTAAAAGCAAG
11865651 CAATTATGGCACTACTTTTAATTA
1 CAATTATGGCACTACTTTTAATTA
11865675 GACGTTGTAG
Statistics
Matches: 124, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
61 4 0.03
62 117 0.94
63 3 0.02
ACGTcount: A:0.35, C:0.09, G:0.13, T:0.43
Consensus pattern (62 bp):
CAATTATGGCACTACTTTTAATTAAATGCCATAATTGAGTAATGTTAATATTTAAAAGCAAG
Found at i:11873967 original size:215 final size:218
Alignment explanation
Indices: 11873584--11874232 Score: 580
Period size: 215 Copynumber: 2.9 Consensus size: 218
11873574 TTTTGTGATT
11873584 TTTTTTACTTTAGGTGACATTATAATTTTGTCACTAATTTAAAATTTTATTAGTGACAAATTTTT
1 TTTTTTACTTTAGGTGACATTATAATTTTGTCACTAATTTAAAATTTTATTAGTGACAAATTTTT
* * * * * *
11873649 TCTAATAGATTTTAGGTGACATTATTAATTTTAATCATAAATTGAACACTTTAGTTAATTATTAA
66 TCTAATAGATTTGAGGTGACATTATTAATTTTAATCACAAACTAAACACTTTAATTAACTATTAA
* * *
11873714 TGACATTATAATTTCATCATGTCAATATATGATGTTATATGATGATAATATGAATGTCACAAACT
131 TGACATTATAATTTCATAATGTCAATATATGATGTTATATGATGATAACATAAATGTCACAAACT
11873779 TTTACCACCAAAGTTATTTAACG
196 TTTACCACCAAAGTTATTTAACG
* * * * * *
11873802 TTTTTTATTTTAGGTGACGTTATAATTTTGTTA-TCATTTTAAATTTTATTTGTGAC-AA-TTTT
1 TTTTTTACTTTAGGTGACATTATAATTTTGTCACTAATTTAAAATTTTATTAGTGACAAATTTTT
** ** ** *
11873864 TCTGTTAGATTTGAGGTGATGTTATTAATTTTTGTCACAAACTAAACAGTTTAATTAACTATTAA
66 TCTAATAGATTTGAGGTGACATTATTAATTTTAATCACAAACTAAACACTTTAATTAACTATTAA
* *
11873929 TGACATTGTAATTTCGTAATGTCAATGCATA-G-TGTTATATGATGATAACATAAATGTCACAAA
131 TGACATTATAATTTCATAATGTCAAT--ATATGATGTTATATGATGATAACATAAATGTCACAAA
* * * *
11873992 CTTTTATCGCCAAATTTATTTGGCGAGAAATTTTTTTGTGACAT
194 CTTTTACCACCAAAGTTATTT--------A----------AC-G
* * * * **
11874036 TTTTTTATTTTAGGTGACATTATAATTTTGTCACCAATTTAAAATTTTCTTCGTGATGAATTTTT
1 TTTTTTACTTTAGGTGACATTATAATTTTGTCACTAATTTAAAATTTTATTAGTGACAAATTTTT
* * * ** * * *
11874101 T-TGATAGATTTTAGGTCATGTTATTAA-TTT-GTCACAAATTAAACACTTTAGTTAACTATTAA
66 TCTAATAGATTTGAGGTGACATTATTAATTTTAATCACAAACTAAACACTTTAATTAACTATTAA
* ** * * * *
11874163 TGACGTTGCAATTTTATCACA-GT-AATGTATGATATTATATGATGATAACATAAATGTCATAAA
131 TGACATTATAATTTCAT-A-ATGTCAATATATGATGTTATATGATGATAACATAAATGTCACAAA
11874226 CTTTTAC
194 CTTTTAC
11874233 TACTGAATTT
Statistics
Matches: 353, Mismatches: 50, Indels: 40
0.80 0.11 0.09
Matches are distributed among these distances:
215 126 0.36
216 3 0.01
217 23 0.07
218 30 0.08
223 1 0.00
232 2 0.01
233 3 0.01
234 111 0.31
235 23 0.07
236 26 0.07
237 5 0.01
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (218 bp):
TTTTTTACTTTAGGTGACATTATAATTTTGTCACTAATTTAAAATTTTATTAGTGACAAATTTTT
TCTAATAGATTTGAGGTGACATTATTAATTTTAATCACAAACTAAACACTTTAATTAACTATTAA
TGACATTATAATTTCATAATGTCAATATATGATGTTATATGATGATAACATAAATGTCACAAACT
TTTACCACCAAAGTTATTTAACG
Found at i:11874211 original size:234 final size:235
Alignment explanation
Indices: 11873802--11874467 Score: 823
Period size: 234 Copynumber: 2.8 Consensus size: 235
11873792 TTATTTAACG
* * * * * *
11873802 TTTTTTATTTTAGGTGACGTTATAATTTTGTTATC-ATTTTAAATTTTATTTGTGACAATTTTTC
1 TTTTTTATTTTAGGTGACGTTATAATTTTGTAACCAATTTAAAATTTT-TTCGTGAGAATTTTTT
* * * * * *
11873866 TGTTAGATTTGAGGTGATGTTATTAATTTTTGTCACAAACTAAACAGTTTAATTAACTATTAATG
65 TGATAGATTTTAGGTAATGTTATTAA-TTTTGTCACAAATTAAACACTTTAGTTAACTATTAATG
* * *
11873931 ACATTGTAATTTCGT-A-ATGTCAATGCATAGTGTTATATGATGATAACATAAATGTCACAAACT
129 ACATTGCAATTTTGTCACA-GTCAATGTATAGTGTTATATGATGATAACATAAATGTCACAAACT
*
11873994 TTTA-TCGCCAAATTTATTTGGCGAGAAATTTTTTTGTG-ACAT-
193 TTTACT-ACCAAATTTATTTGGCGAGAAATTTTTTT-TGAACATA
* *
11874036 TTTTTTATTTTAGGTGACATTATAATTTTGTCACCAATTTAAAATTTTCTTCGTGATGAATTTTT
1 TTTTTTATTTTAGGTGACGTTATAATTTTGTAACCAATTTAAAATTTT-TTCGTGA-GAATTTTT
*
11874101 TTGATAGATTTTAGGTCATGTTATTAA-TTTGTCACAAATTAAACACTTTAGTTAACTATTAATG
64 TTGATAGATTTTAGGTAATGTTATTAATTTTGTCACAAATTAAACACTTTAGTTAACTATTAATG
* * * *
11874165 ACGTTGCAATTTTATCACAGT-AATGTAT-GATATTATATGATGATAACATAAATGTCATAAACT
129 ACATTGCAATTTTGTCACAGTCAATGTATAG-TGTTATATGATGATAACATAAATGTCACAAACT
** * *
11874228 TTTACTACTGAATTTATTTGGTGAGAAATTTTTTTTGATATATA
193 TTTACTACCAAATTTATTTGGCGAGAAATTTTTTTTGA-ACATA
* *
11874272 TTTTTTATTTTAGGTGACGTAATAATTTTGTAACCAATTTAAAATTTTATCTGTGACGAATTTTT
1 TTTTTTATTTTAGGTGACGTTATAATTTTGTAACCAATTTAAAATTTTTTC-GTGA-GAATTTTT
* *
11874337 TTGATAGATTTTAGGTAATGTTATGAATTTTTGTCAC-AATTGAACACTTTAGTTAACTATTAAT
64 TTGATAGATTTTAGGTAATGTTATTAA-TTTTGTCACAAATTAAACACTTTAGTTAACTATTAAT
* * * *
11874401 GGATATTGCAATTTTGTCACA-TCGATGTATAGTGTTATATGACGATAACGTAAATGTCACAAAC
128 -GACATTGCAATTTTGTCACAGTCAATGTATAGTGTTATATGATGATAACATAAATGTCACAAAC
11874465 TTT
192 TTT
11874468 AAAATGATAT
Statistics
Matches: 375, Mismatches: 42, Indels: 26
0.85 0.09 0.06
Matches are distributed among these distances:
233 3 0.01
234 143 0.38
235 26 0.07
236 113 0.30
237 27 0.07
238 62 0.17
239 1 0.00
ACGTcount: A:0.32, C:0.09, G:0.14, T:0.45
Consensus pattern (235 bp):
TTTTTTATTTTAGGTGACGTTATAATTTTGTAACCAATTTAAAATTTTTTCGTGAGAATTTTTTT
GATAGATTTTAGGTAATGTTATTAATTTTGTCACAAATTAAACACTTTAGTTAACTATTAATGAC
ATTGCAATTTTGTCACAGTCAATGTATAGTGTTATATGATGATAACATAAATGTCACAAACTTTT
ACTACCAAATTTATTTGGCGAGAAATTTTTTTTGAACATA
Found at i:11878516 original size:205 final size:202
Alignment explanation
Indices: 11878074--11878662 Score: 659
Period size: 205 Copynumber: 2.9 Consensus size: 202
11878064 TACGATTTAA
* * * * * *
11878074 TGACGTTAATTATGTCA-CAATACTATGACGAGTTACCTTTTATCACTAATATATCATATTTTAT
1 TGACGATAAATATGTCACCAATACTATGACGATTTATCTTTTGTCACTAATATATCAAATTTTAT
* ** **
11878138 CATTTATTTTGTGACAATTATAGCCTTCAATGATGTTTTTCTTCATAAATAGTTGATGAAAACTA
66 CATTTATTTTGTGAC-ATTATAGCCTTTAATGACATTTTT-TTCATAAATAGTTGACAAAAACTA
* ** *
11878203 ACGTCACAAAAAAAAAAAAAGCATAAGGTGACATTTGATTTTATTGTCACGTTTGACATTATCTT
129 ACATCAC-AAAAAAAAAAAA-CATAAGGTGACATTTGATTTTATTGTCACAATAGACATTATCTT
*
11878268 ATAATCATTAG
192 ACAATCATTAG
* * * *
11878279 TGACGATAACTATGTCATCAATACTGTGACGATTTATCTTTTGTCACTATTATATCAAATTTTTA
1 TGACGATAAATATGTCACCAATACTATGACGATTTATCTTTTGTCACTAATATATCAAA-TTTTA
* * * * * *
11878344 TCATTTATTTTGCGACGATTATTGCCTTTAATAACATTATTTTCATAAATAGCTAACAAAAACTA
65 TCATTTATTTTGTGAC-ATTATAGCCTTTAATGACATTTTTTTCATAAATAGTTGACAAAAACTA
* * * *
11878409 ACATCACAAAAAAAATAAAACATAAGGTGATATTTCATTTTATTGTCACAATAGGCATTGTCTTA
129 ACATCACAAAAAAAA-AAAACATAAGGTGACATTTGATTTTATTGTCACAATAGACATTATCTTA
*
11878474 CAATCATTGG
193 CAATCATTAG
* * * ***
11878484 TGATGATAAATGTGTCACCTATACTATGACGATTTAAT-TTTTGTCAC-AATATATTTGATTTTA
1 TGACGATAAATATGTCACCAATACTATGACGATTT-ATCTTTTGTCACTAATATATCAAATTTTA
* * * * *
11878547 CCATTTATTTTGTGACAGTTATAGCATTTAATGACATTTTTTTCATACATAGTTGACAGAAATTA
65 TCATTTATTTTGTGACA-TTATAGCCTTTAATGACATTTTTTTCATAAATAGTTGACAAAAACTA
* *
11878612 ACATCAC---AAAAAAAAGCATAAGGTGACATTTGATTTTATTGTCACAGTAGA
129 ACATCACAAAAAAAAAAAACATAAGGTGACATTTGATTTTATTGTCACAATAGA
11878663 TTCACAAGAG
Statistics
Matches: 323, Mismatches: 56, Indels: 16
0.82 0.14 0.04
Matches are distributed among these distances:
199 34 0.11
200 5 0.02
202 1 0.00
203 64 0.20
204 7 0.02
205 107 0.33
206 67 0.21
207 38 0.12
ACGTcount: A:0.36, C:0.14, G:0.12, T:0.39
Consensus pattern (202 bp):
TGACGATAAATATGTCACCAATACTATGACGATTTATCTTTTGTCACTAATATATCAAATTTTAT
CATTTATTTTGTGACATTATAGCCTTTAATGACATTTTTTTCATAAATAGTTGACAAAAACTAAC
ATCACAAAAAAAAAAAACATAAGGTGACATTTGATTTTATTGTCACAATAGACATTATCTTACAA
TCATTAG
Found at i:11883507 original size:216 final size:215
Alignment explanation
Indices: 11883132--11883564 Score: 557
Period size: 216 Copynumber: 2.0 Consensus size: 215
11883122 TTTGTTCATG
* * * * *
11883132 AATGGTGTTGCTATTTCAGATGAATGAAGGTCAGACATGGTTGCTGTTCCCATAGACAACGTCAA
1 AATGGTGTTGCTATTGCAGACGAATGAAGGTCAGACACGATTGCTGTTCCCATAGACAACATCAA
* * * *
11883197 TTGTTGATAGTGTTTTTGGGTGTTGGTTAGAGGGAAGCAGATTGGTGACTGCATGATCAATAGAT
66 TTGTTAATAGTGTTTTTAGGTGTTAGTTAGAGGGAAACAGATTGGTGACTGCATGATCAATAGAT
* * * *
11883262 TGAACTTGCTATAAGAAAGCATAATCAAAG-GTTGCTAAAGTTGGTTTTTCAGGATACGCTCTGA
131 TGAACTTGATACAAGAAAGCACAATCAAAGAG-TGCTAAAGTTGGTTTTT-AGGATACGCTCTAA
*
11883326 CGCCAAAGCCAATAAAGTGTCT
194 CACCAAAGCCAATAAAGTGTCT
* * * * * *
11883348 AATGGTGTTGTTGTTGCAGACGAAT-AGAGGTTAGACACGATTGTTGTTCCTATAGACGACATCA
1 AATGGTGTTGCTATTGCAGACGAATGA-AGGTCAGACACGATTGCTGTTCCCATAGACAACATCA
* **
11883412 ATTGTTAATAGTGTTTTTAGGTGTTAGTTGGAGGGAAACAGATTGGTGACTGCATGATGGATAGA
65 ATTGTTAATAGTGTTTTTAGGTGTTAGTTAGAGGGAAACAGATTGGTGACTGCATGATCAATAGA
* * * * *
11883477 TTGAACTT-ATAGCAAGAAAGCACGATCAAAGAGTGCTGAAGTTGGTTTTTGGGGTATGCTCTAA
130 TTGAACTTGATA-CAAGAAAGCACAATCAAAGAGTGCTAAAGTTGGTTTTTAGGATACGCTCTAA
11883541 CACCAAAGCCAATAAAGTGTCT
194 CACCAAAGCCAATAAAGTGTCT
11883563 AA
1 AA
11883565 GGTTTAGTGA
Statistics
Matches: 186, Mismatches: 28, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
215 36 0.19
216 149 0.80
217 1 0.01
ACGTcount: A:0.30, C:0.13, G:0.26, T:0.31
Consensus pattern (215 bp):
AATGGTGTTGCTATTGCAGACGAATGAAGGTCAGACACGATTGCTGTTCCCATAGACAACATCAA
TTGTTAATAGTGTTTTTAGGTGTTAGTTAGAGGGAAACAGATTGGTGACTGCATGATCAATAGAT
TGAACTTGATACAAGAAAGCACAATCAAAGAGTGCTAAAGTTGGTTTTTAGGATACGCTCTAACA
CCAAAGCCAATAAAGTGTCT
Found at i:11887517 original size:18 final size:18
Alignment explanation
Indices: 11887494--11887537 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
11887484 TTTATTTTGT
*
11887494 TTTTTTCACAAAAATTTA
1 TTTTTTCACAAAAAATTA
* *
11887512 TTTTTTTATAAAAAATTA
1 TTTTTTCACAAAAAATTA
*
11887530 TTATTTCA
1 TTTTTTCA
11887538 TTTTTATTTC
Statistics
Matches: 21, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.39, C:0.07, G:0.00, T:0.55
Consensus pattern (18 bp):
TTTTTTCACAAAAAATTA
Found at i:11888213 original size:30 final size:28
Alignment explanation
Indices: 11888179--11888240 Score: 79
Period size: 30 Copynumber: 2.1 Consensus size: 28
11888169 AGTTCGATTT
* *
11888179 TTCAGTGGTTTGGAGTAGTTCAGTCACCAG
1 TTCAGCGGTTTGGAGCAG-TCA-TCACCAG
*
11888209 TTCAGCGGTTTGGAGCAGTCATCACTAG
1 TTCAGCGGTTTGGAGCAGTCATCACCAG
11888237 TTCA
1 TTCA
11888241 ATTAGACCAG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
28 10 0.34
29 3 0.10
30 16 0.55
ACGTcount: A:0.21, C:0.19, G:0.27, T:0.32
Consensus pattern (28 bp):
TTCAGCGGTTTGGAGCAGTCATCACCAG
Found at i:11889423 original size:15 final size:16
Alignment explanation
Indices: 11889405--11889439 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
11889395 AAAATTCATA
*
11889405 TTTTC-TGAATAACAT
1 TTTTCATGAACAACAT
11889420 TTTTCATGAACAACAT
1 TTTTCATGAACAACAT
11889436 TTTT
1 TTTT
11889440 ATAAAAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.28
16 13 0.72
ACGTcount: A:0.31, C:0.14, G:0.06, T:0.49
Consensus pattern (16 bp):
TTTTCATGAACAACAT
Found at i:11890138 original size:20 final size:19
Alignment explanation
Indices: 11890095--11890208 Score: 93
Period size: 20 Copynumber: 5.8 Consensus size: 19
11890085 GGTTTTATGG
* *
11890095 TTGACTTTAGGGTTTAGTGA
1 TTGACTTT-GGGTTTAGGGT
11890115 TTGACTTTGTGGTTTAGGGT
1 TTGACTTTG-GGTTTAGGGT
* *
11890135 TTGAATTTGTGTTTAGGGT
1 TTGACTTTGGGTTTAGGGT
* * *
11890154 TAGATTTTGGGGTTATGGGT
1 TTGACTTTGGGTTTA-GGGT
* ** *
11890174 TAGGTTTTGAGGTTTAGTGT
1 TTGACTTTG-GGTTTAGGGT
11890194 TTGACTTTGGGTTTA
1 TTGACTTTGGGTTTA
11890209 AGGTAAAGTT
Statistics
Matches: 77, Mismatches: 14, Indels: 7
0.79 0.14 0.07
Matches are distributed among these distances:
19 27 0.35
20 45 0.58
21 5 0.06
ACGTcount: A:0.15, C:0.03, G:0.33, T:0.49
Consensus pattern (19 bp):
TTGACTTTGGGTTTAGGGT
Found at i:11890206 original size:39 final size:38
Alignment explanation
Indices: 11890104--11890208 Score: 102
Period size: 39 Copynumber: 2.7 Consensus size: 38
11890094 GTTGACTTTA
* *
11890104 GGGTTTAGTGATTGACTTTGTGGTTTAGGGTTTGAATTT
1 GGGTTTAGTGTTTGACTTTG-GGTTTAGGGTTAGAATTT
* * * * * **
11890143 GTGTTTAGGGTTAGATTTTGGGGTTATGGGTTAGGTTTT
1 GGGTTTAGTGTTTGACTTTGGGTTTA-GGGTTAGAATTT
11890182 GAGGTTTAGTGTTTGACTTTGGGTTTA
1 G-GGTTTAGTGTTTGACTTTGGGTTTA
11890209 AGGTAAAGTT
Statistics
Matches: 50, Mismatches: 14, Indels: 3
0.75 0.21 0.04
Matches are distributed among these distances:
38 5 0.10
39 25 0.50
40 20 0.40
ACGTcount: A:0.14, C:0.02, G:0.35, T:0.49
Consensus pattern (38 bp):
GGGTTTAGTGTTTGACTTTGGGTTTAGGGTTAGAATTT
Found at i:11890238 original size:21 final size:19
Alignment explanation
Indices: 11890199--11890248 Score: 64
Period size: 21 Copynumber: 2.5 Consensus size: 19
11890189 AGTGTTTGAC
11890199 TTTGGGTTTAAGGTAAAGT
1 TTTGGGTTTAAGGTAAAGT
*
11890218 TTTGGGATTTAGGGTTAAAGT
1 TTTGGG-TTTAAGG-TAAAGT
11890239 TTTAGGGTTT
1 TTT-GGGTTT
11890249 GGATTAGGGT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
19 6 0.22
20 6 0.22
21 12 0.44
22 3 0.11
ACGTcount: A:0.22, C:0.00, G:0.32, T:0.46
Consensus pattern (19 bp):
TTTGGGTTTAAGGTAAAGT
Found at i:11891441 original size:10 final size:10
Alignment explanation
Indices: 11891428--11891457 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
11891418 GGTTTACCTG
11891428 AGTTTAACCA
1 AGTTTAACCA
*
11891438 AGTTTGACCA
1 AGTTTAACCA
11891448 AGTTTAACCA
1 AGTTTAACCA
11891458 TTTTTACGAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.37, C:0.20, G:0.13, T:0.30
Consensus pattern (10 bp):
AGTTTAACCA
Found at i:11897368 original size:16 final size:17
Alignment explanation
Indices: 11897343--11897375 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
11897333 TTTTACCAGA
*
11897343 AAAATGTTTTTGTTTTT
1 AAAATGTTTTAGTTTTT
11897360 AAAAT-TTTTAGTTTTT
1 AAAATGTTTTAGTTTTT
11897376 TCAAATTATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.27, C:0.00, G:0.09, T:0.64
Consensus pattern (17 bp):
AAAATGTTTTAGTTTTT
Found at i:11905816 original size:16 final size:17
Alignment explanation
Indices: 11905784--11905816 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
11905774 AGAGGCTTTG
*
11905784 ATCAATTGGTGTTAAAA
1 ATCAATTGGTGTGAAAA
11905801 ATCAATT-GTGTGAAAA
1 ATCAATTGGTGTGAAAA
11905817 TGGGAGGTTG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.42, C:0.06, G:0.18, T:0.33
Consensus pattern (17 bp):
ATCAATTGGTGTGAAAA
Found at i:11905987 original size:17 final size:17
Alignment explanation
Indices: 11905965--11905997 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
11905955 TAATGAATTG
11905965 ATGAACTATAAGCAAAT
1 ATGAACTATAAGCAAAT
*
11905982 ATGAACTATAATCAAA
1 ATGAACTATAAGCAAA
11905998 ATAAAGAGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.55, C:0.12, G:0.09, T:0.24
Consensus pattern (17 bp):
ATGAACTATAAGCAAAT
Found at i:11914283 original size:10 final size:10
Alignment explanation
Indices: 11914262--11914296 Score: 54
Period size: 10 Copynumber: 3.6 Consensus size: 10
11914252 TTTTCGTCCG
11914262 TTTTGATC-A
1 TTTTGATCAA
11914271 TTTTGATCAA
1 TTTTGATCAA
11914281 TTTTGATCAA
1 TTTTGATCAA
*
11914291 GTTTGA
1 TTTTGA
11914297 CTAAATTTGA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
9 8 0.33
10 16 0.67
ACGTcount: A:0.26, C:0.09, G:0.14, T:0.51
Consensus pattern (10 bp):
TTTTGATCAA
Found at i:11918744 original size:15 final size:17
Alignment explanation
Indices: 11918711--11918755 Score: 58
Period size: 16 Copynumber: 2.7 Consensus size: 17
11918701 ATTATTTTCA
11918711 TCTTTTTATGTTAGCAAT
1 TCTTTTTAT-TTAGCAAT
11918729 T-TTTTTATTTAG-AAT
1 TCTTTTTATTTAGCAAT
*
11918744 TCTTTTAATTTA
1 TCTTTTTATTTA
11918756 AAAATATCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 4
0.83 0.03 0.13
Matches are distributed among these distances:
15 4 0.16
16 13 0.52
17 7 0.28
18 1 0.04
ACGTcount: A:0.24, C:0.07, G:0.07, T:0.62
Consensus pattern (17 bp):
TCTTTTTATTTAGCAAT
Found at i:11919333 original size:212 final size:214
Alignment explanation
Indices: 11918939--11919347 Score: 493
Period size: 212 Copynumber: 1.9 Consensus size: 214
11918929 TTTTGGTTTG
* * * * *
11918939 GAATTACTATTTATTTGTAATAATAATTTTTTACGTTATCAATTTAATTATTTACATTATAATAA
1 GAATTACTATTTATTTATAATAATAATTTTTTACATTATCAACTCAATTATTTACATTAAAATAA
* * * *
11919004 TATGTTTGTATACTTGTCCTTATCATTTATTATATTTAGAATTATCATAACTTTTTTCTTAAGGT
66 TATATTTGTATACTTGTCCTTATCATTTATTAGATTTAAAATTATCACAACTTTTTTCTTAAGGT
* ** **
11919069 ATTGCAACACTTCTAATTTATTTTATGCCAAATGATACAAATATTACAATTATTCTCACATTTTT
131 ATTACAACACTTCTAACCTATTTTACACCAAATGATACAAATATTACAATTATTCTCACATTTTT
11919134 ACTTAAACACCTTTTTATT
196 ACTTAAACACCTTTTTATT
* * * * * *
11919153 GAATTATTTTTTATTTATAATAATAATTATTTTATATTGTCAACTCAATTGTTTACGTTAAAATA
1 GAATTACTATTTATTTATAATAATAATT-TTTTACATTATCAACTCAATTATTTACATTAAAATA
* * * *
11919218 ATATATTT-TATGCTTGTTCTTAT-ATTTTGTTAGGTTTAAAATTATCACAAC-TTTTT-TTAAG
65 ATATATTTGTATACTTGTCCTTATCA-TTTATTAGATTTAAAATTATCACAACTTTTTTCTTAAG
* * * * * * *
11919279 GTGTTACGATAGTTTTAACCTATTTTACACCAAATGATACTAATTTTACAATTATTCTCACATTT
129 GTATTACAACACTTCTAACCTATTTTACACCAAATGATACAAATATTACAATTATTCTCACATTT
11919344 TTAC
194 TTAC
11919348 ATTACAATAC
Statistics
Matches: 162, Mismatches: 31, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
212 62 0.38
213 6 0.04
214 59 0.36
215 35 0.22
ACGTcount: A:0.33, C:0.11, G:0.07, T:0.49
Consensus pattern (214 bp):
GAATTACTATTTATTTATAATAATAATTTTTTACATTATCAACTCAATTATTTACATTAAAATAA
TATATTTGTATACTTGTCCTTATCATTTATTAGATTTAAAATTATCACAACTTTTTTCTTAAGGT
ATTACAACACTTCTAACCTATTTTACACCAAATGATACAAATATTACAATTATTCTCACATTTTT
ACTTAAACACCTTTTTATT
Found at i:11920363 original size:18 final size:18
Alignment explanation
Indices: 11920342--11920388 Score: 53
Period size: 18 Copynumber: 2.7 Consensus size: 18
11920332 TGTTCTCACT
*
11920342 TTTTTTAG-TTAGCATGTA
1 TTTTTTAGTTTAGAAT-TA
*
11920360 TTTTTTTGTTTAGAATTA
1 TTTTTTAGTTTAGAATTA
11920378 TTTTTTA-TTTA
1 TTTTTTAGTTTA
11920389 TAGTAATAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
17 4 0.16
18 15 0.60
19 6 0.24
ACGTcount: A:0.21, C:0.02, G:0.11, T:0.66
Consensus pattern (18 bp):
TTTTTTAGTTTAGAATTA
Found at i:11920746 original size:212 final size:215
Alignment explanation
Indices: 11920372--11920756 Score: 478
Period size: 212 Copynumber: 1.8 Consensus size: 215
11920362 TTTTTGTTTA
* * * *
11920372 GAATTATTTTTTATTTATAGTAATAAATTTTTTATGTTATCAACTTATATTTACGTTACAATAAA
1 GAATTATTTTTTATTTATAATAATAAATTTTTTACGTTACCAACTTATATTCACGTTACAATAAA
* ** * *
11920437 ATTTTTTATGCTTGTTCTTATCTTTTATTATGTTTAAAATTATTACAAGTTTTTCTTAAGGTATT
66 ATTTTTTATACTTGTTCTTATCTTTTATTACATTTAAAATTATTACAAGTTTTTCTTAAGCTATA
*
11920502 ACGACACTTTTAATATATTTTACATCAAATAATATCAATTTTACGATTATTCTCACATTTTTACA
131 ACGACACTTTTAATATATTTTACATCAAATAATACCAATTTTACGATTATTCTCACATTTTTACA
11920567 TTAACACCTATTTTTTAATT
196 TTAACACCTATTTTTTAATT
* * * *
11920587 GAATTATTTTTTATTTATAATACT-AATTTTTTACGTTACCAA-TT-TA-TCATGTTTCAATATT
1 GAATTATTTTTTATTTATAATAATAAATTTTTTACGTTACCAACTTATATTCACGTTACAATA-A
* * * * *
11920648 ATTTTTTTATATTTGTTGTTA-CTTTTCATTACATTTAGAATTATTACAATTTTTTACTTAAGCT
65 AATTTTTTATACTTGTTCTTATCTTTT-ATTACATTTAAAATTATTACAAGTTTTT-CTTAAGCT
* * * *
11920712 GTAATGACA-TTTCTAAT-TATTTTGCATTAAATAATACCAATTTTA
128 ATAACGACACTTT-TAATATATTTTACATCAAATAATACCAATTTTA
11920757 TAATTATGCT
Statistics
Matches: 143, Mismatches: 23, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
211 15 0.10
212 71 0.50
213 19 0.13
214 16 0.11
215 22 0.15
ACGTcount: A:0.32, C:0.10, G:0.06, T:0.52
Consensus pattern (215 bp):
GAATTATTTTTTATTTATAATAATAAATTTTTTACGTTACCAACTTATATTCACGTTACAATAAA
ATTTTTTATACTTGTTCTTATCTTTTATTACATTTAAAATTATTACAAGTTTTTCTTAAGCTATA
ACGACACTTTTAATATATTTTACATCAAATAATACCAATTTTACGATTATTCTCACATTTTTACA
TTAACACCTATTTTTTAATT
Found at i:11921453 original size:514 final size:512
Alignment explanation
Indices: 11920441--11921454 Score: 1135
Period size: 514 Copynumber: 2.0 Consensus size: 512
11920431 AATAAAATTT
* * *
11920441 TTTATGCTTGTTCTTATCTTTTATTATGTTTAAAATTATTACAAGTTTTTCTTAAGGTATTACGA
1 TTTATGCTTGTTCTTATCTTTTAATATGTTTAAAATTATTACAACTTTTTCTTAAAGTATTACGA
* * * *
11920506 CACTTTTAATATATTTTACATCAAATAATATCAATTTTACGATTATTCTCACATTTTTACATTAA
66 CACTTTTAACACATTTTACATAAAATAATATCAATTTTACAATTATTCTCACATTTTTACATTAA
* * * *
11920571 CACCTATTTTTTAATTGAATTATTTTTTATTTATAATACTAATTTTTTACGTTACCAATTTATCA
131 CACCTAGTTTTTAATTAAATTATTTTTTATTTATAATACTAACTTTTTACATTACCAATTTATCA
* * * *
11920636 TGTTTCAATATTATTTTTTTATATTTGTTGTTACTTTTCATTACATTTAGAATTATTACAATTTT
196 TATTTCAATAATATTTTTTTATATTTGTTGTTACTTTTCATTACATTTAGAATTATCACAATTAT
* * * * * *
11920701 TTACTTAAGCTGTAATGACATTTCTAATTATTTTGCATTAAATAATACCAATTTTATAATTATGC
261 TTACTTAAGCTGTAATCACACTTCTAACTATTTTACATCAAATAATAACAATTTTATAATTATGC
* ** *
11920766 TTACTATTTTTTGTTAACTCTTAACTTTTTATTTAAAATTATTATTTTATTTGCAATAATAGTTT
326 TCACTATTTTTCATTAACTCTTAACTTTTTATTTAAAATTATTATTTTATATGCAATAATAGTTT
* * * * *
11920831 TTTTATATTACCAACTTAATTATTTATATTATAATATTATTTTTTTACGTTTGTTGTTATTTTTC
391 TTGTACATTACCAACTTAATTATTTATATTACAATAATATTTTTTTACG-TTGTTGTTATCTTTC
* ** *
11920896 ATTTCGTTTAGAAGTATTACAATTTTTTTCTTAAAGGTGTTACGACATTCTTTTACATA
455 ATTTCGTTTAGAAGTAATACAAACTCTTTCTT-AAGGTGTTACGACATTCTTTTACATA
* * *
11920955 TTTATGCTTGTTCTTATCTTTTAATACT-TTTAAAATTATTATAACTTTTTTTTAAAGTATTATG
1 TTTATGCTTGTTCTTATCTTTTAATA-TGTTTAAAATTATTACAACTTTTTCTTAAAGTATTACG
* * * * *
11921019 ACA-TTTCTAACACATTTTATATTAAAAT-ACA-CTAATTTTATAATTATTCTTATATTTTTACA
65 ACACTTT-TAACACATTTTACA-TAAAATAATATC-AATTTTACAATTATTCTCACATTTTTACA
**
11921081 TTAACACCTAGTTTTTGGTGTAAGATTATTTTTTATTTATAATACTAACTTTTT-CATTACCAAT
127 TTAACACCTAGTTTTTAAT-TAA-ATTATTTTTTATTTATAATACTAACTTTTTACATTACCAA-
* * * * * *
11921145 TTAATTATTTATATTTTAATAATATTTTTTTTGTATTTGTTTTTATTTTTCATTACGTTTAGAAT
189 -T--TTA-TCATATTTCAATAATA-TTTTTTTATATTTGTTGTTACTTTTCATTACATTTAGAAT
* * * *
11921210 TATCACAA-TATTTA-TTAAGGTGTAA-CATACTTGTAACTATTTTACATCAAATAATAATAATT
249 TATCACAATTATTTACTTAAGCTGTAATCACACTTCTAACTATTTTACATCAAATAATAACAATT
* * * ** *
11921272 TTATGATTATTCTCACT-TTTTTACATTAACTTTTATTTTTTTGTTTAAAATTA-T-TTTTATAT
314 TTATAATTATGCTCACTATTTTT-CATTAACTCTTAACTTTTTATTTAAAATTATTATTTTATAT
* * *
11921334 GTAATAATA-TTTCTTGTACATTACCAACTTAATTATTTTTGTTACAATAATATCTTTTTATAC-
378 GCAATAATAGTTT-TTGTACATTACCAACTTAATTATTTATATTACAATAATAT-TTTTT-TACG
* *
11921397 TTGTTGTTATCTTTCATTAT-GTTTATAA-TAAT-CATAACTCTTTGTT-AGGATGTTACGA
440 TTGTTGTTATCTTTCATT-TCGTTTAGAAGTAATACA-AACTCTTTCTTAAGG-TGTTACGA
11921455 TATTTTTAAC
Statistics
Matches: 416, Mismatches: 65, Indels: 38
0.80 0.13 0.07
Matches are distributed among these distances:
513 7 0.02
514 123 0.30
515 29 0.07
516 102 0.25
517 13 0.03
518 69 0.17
519 13 0.03
520 17 0.04
521 43 0.10
ACGTcount: A:0.31, C:0.10, G:0.06, T:0.53
Consensus pattern (512 bp):
TTTATGCTTGTTCTTATCTTTTAATATGTTTAAAATTATTACAACTTTTTCTTAAAGTATTACGA
CACTTTTAACACATTTTACATAAAATAATATCAATTTTACAATTATTCTCACATTTTTACATTAA
CACCTAGTTTTTAATTAAATTATTTTTTATTTATAATACTAACTTTTTACATTACCAATTTATCA
TATTTCAATAATATTTTTTTATATTTGTTGTTACTTTTCATTACATTTAGAATTATCACAATTAT
TTACTTAAGCTGTAATCACACTTCTAACTATTTTACATCAAATAATAACAATTTTATAATTATGC
TCACTATTTTTCATTAACTCTTAACTTTTTATTTAAAATTATTATTTTATATGCAATAATAGTTT
TTGTACATTACCAACTTAATTATTTATATTACAATAATATTTTTTTACGTTGTTGTTATCTTTCA
TTTCGTTTAGAAGTAATACAAACTCTTTCTTAAGGTGTTACGACATTCTTTTACATA
Found at i:11921539 original size:219 final size:215
Alignment explanation
Indices: 11921049--11921545 Score: 532
Period size: 216 Copynumber: 2.3 Consensus size: 215
11921039 ATTAAAATAC
* * * * * *
11921049 ACTAATTTTATAATTATTCTTATATTTTTACATTAACACCTAGTTTTTGGTGTAAGATTATTTTT
1 ACTAATTTTATGATTATTCTCACATTTTTACATTAACACTTA-TTTTTGGTTTAAAATTATTTTT
* * * * ** * *
11921114 TATTTATAATACTAACTTTTTCATTACCAATTTAATTATTTATATTTTAATAATATTTTTTTTGT
65 TATTAATAATACTAACTTGTACATTACCAACTTAATTATTTATATTACAATAATATTCTTTTTAT
* * * *
11921179 ATTTGTTTTTATTTTTCATTACGTTTAGAATTATCACAATATTTATTAAGGTGTAACATACTTGT
130 ACTTGTTGTTATCTTTCATTACGTTTAGAATAATCACAATATTTATTAAGGTGTAACATACTTGT
11921244 AACTATTTTACATCAAATAAT
195 AACTATTTTACATCAAATAAT
* * ** *
11921265 AATAATTTTATGATTATTCTCACTTTTTTACATTAACTTTTATTTTTTTGTTTAAAATTATTTTT
1 ACTAATTTTATGATTATTCTCACATTTTTACATTAACACTTA-TTTTTGGTTTAAAATTATTTTT
** * *
11921330 ATATGTAATAATA-TTTCTTGTACATTACCAACTTAATTATTTTTGTTACAATAATA-TCTTTTT
65 -TAT-TAATAATACTAACTTGTACATTACCAACTTAATTATTTATATTACAATAATATTCTTTTT
* * * * * *
11921393 ATACTTGTTGTTATCTTTCATTATGTTTATAATAATCATAACTCTTTGTT-AGGATGTTACGATA
128 ATACTTGTTGTTATCTTTCATTACGTTTAGAATAATCACAA-TATTTATTAAGG-TGTAAC-ATA
* * * * *
11921457 TTTTTAACTTGTTTTACATTAAATGAT
190 CTTGTAAC-TATTTTACATCAAATAAT
**
11921484 ACTAATTTTATGATTATTCTCACATTTTTATGTTAACACTTATTTATTGGTTTAAAATTATT
1 ACTAATTTTATGATTATTCTCACATTTTTACATTAACACTTATTT-TTGGTTTAAAATTATT
11921546 CTTTGGGTTT
Statistics
Matches: 228, Mismatches: 46, Indels: 11
0.80 0.16 0.04
Matches are distributed among these distances:
216 95 0.42
217 48 0.21
218 19 0.08
219 66 0.29
ACGTcount: A:0.31, C:0.09, G:0.06, T:0.53
Consensus pattern (215 bp):
ACTAATTTTATGATTATTCTCACATTTTTACATTAACACTTATTTTTGGTTTAAAATTATTTTTT
ATTAATAATACTAACTTGTACATTACCAACTTAATTATTTATATTACAATAATATTCTTTTTATA
CTTGTTGTTATCTTTCATTACGTTTAGAATAATCACAATATTTATTAAGGTGTAACATACTTGTA
ACTATTTTACATCAAATAAT
Found at i:11923240 original size:10 final size:11
Alignment explanation
Indices: 11923216--11923246 Score: 55
Period size: 10 Copynumber: 2.9 Consensus size: 11
11923206 GAAAATTATT
11923216 TAAATTTTGTA
1 TAAATTTTGTA
11923227 TAAATTTT-TA
1 TAAATTTTGTA
11923237 TAAATTTTGT
1 TAAATTTTGT
11923247 TTTACAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.53
11 9 0.47
ACGTcount: A:0.35, C:0.00, G:0.06, T:0.58
Consensus pattern (11 bp):
TAAATTTTGTA
Found at i:11923241 original size:21 final size:20
Alignment explanation
Indices: 11923208--11923246 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
11923198 GTTAAAGTGA
11923208 AAATTATTTAAATTTTGTAT
1 AAATTATTTAAATTTTGTAT
*
11923228 AAATTTTTATAAATTTTGT
1 AAATTATT-TAAATTTTGT
11923247 TTTACAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 7 0.41
21 10 0.59
ACGTcount: A:0.38, C:0.00, G:0.05, T:0.56
Consensus pattern (20 bp):
AAATTATTTAAATTTTGTAT
Found at i:11923959 original size:13 final size:13
Alignment explanation
Indices: 11923941--11923967 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
11923931 TAGGTCTACA
11923941 AAATAATACCTCT
1 AAATAATACCTCT
11923954 AAATAATACCTCT
1 AAATAATACCTCT
11923967 A
1 A
11923968 TAATGCAACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.48, C:0.22, G:0.00, T:0.30
Consensus pattern (13 bp):
AAATAATACCTCT
Found at i:11924734 original size:25 final size:25
Alignment explanation
Indices: 11924699--11924747 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
11924689 TTGGAATGAA
* *
11924699 TTCAATTAATTATCAACTATAGAAG
1 TTCAATCAATTATCAACCATAGAAG
11924724 TTCAATCAATTATCAACCATAGAA
1 TTCAATCAATTATCAACCATAGAA
11924748 ATGTTATTAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.45, C:0.16, G:0.06, T:0.33
Consensus pattern (25 bp):
TTCAATCAATTATCAACCATAGAAG
Found at i:11933517 original size:2 final size:2
Alignment explanation
Indices: 11933510--11933550 Score: 82
Period size: 2 Copynumber: 20.5 Consensus size: 2
11933500 ATTGTCATAC
11933510 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
11933551 TCTTAGACCA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 39 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:11933785 original size:15 final size:16
Alignment explanation
Indices: 11933755--11933789 Score: 54
Period size: 15 Copynumber: 2.2 Consensus size: 16
11933745 AAAAACTTAT
11933755 AATATTAAATATATCA
1 AATATTAAATATATCA
*
11933771 AATATTTAA-ATATCA
1 AATATTAAATATATCA
11933786 AATA
1 AATA
11933790 AACACAAACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 10 0.56
16 8 0.44
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (16 bp):
AATATTAAATATATCA
Found at i:11934180 original size:24 final size:24
Alignment explanation
Indices: 11934140--11934187 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
11934130 ATTTTTTGAT
11934140 TTTGTTAAATTACATCTCTACAAC
1 TTTGTTAAATTACATCTCTACAAC
*
11934164 TTTGTTAGAA-TATATCTCTACAAC
1 TTTGTTA-AATTACATCTCTACAAC
11934188 GTTATTTTAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.91
25 2 0.09
ACGTcount: A:0.33, C:0.19, G:0.06, T:0.42
Consensus pattern (24 bp):
TTTGTTAAATTACATCTCTACAAC
Found at i:11935423 original size:53 final size:53
Alignment explanation
Indices: 11935348--11935504 Score: 223
Period size: 53 Copynumber: 3.0 Consensus size: 53
11935338 AAAAAAAATC
*
11935348 TTTGAAAAATATTTAAACAAGAAAATTGATATTTCAACTTTTCTTCTTATTTT
1 TTTGAAAAATATTTAAATAAGAAAATTGATATTTCAACTTTTCTTCTTATTTT
*
11935401 TTTGAAAAATATTTAAATAAGAAAATTGATATTTCAACTTTTCCTCTTA--TT
1 TTTGAAAAATATTTAAATAAGAAAATTGATATTTCAACTTTTCTTCTTATTTT
* * *
11935452 TTTGAAAAAAATCTAAAT-AGAAAAATTGATACTTCAACTTTTTCTT-TTATTTT
1 TTTGAAAAATATTTAAATAAG-AAAATTGATATTTCAAC-TTTTCTTCTTATTTT
11935505 AAAAATGGTT
Statistics
Matches: 94, Mismatches: 6, Indels: 8
0.87 0.06 0.07
Matches are distributed among these distances:
50 2 0.02
51 37 0.39
52 6 0.06
53 49 0.52
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.46
Consensus pattern (53 bp):
TTTGAAAAATATTTAAATAAGAAAATTGATATTTCAACTTTTCTTCTTATTTT
Found at i:11935477 original size:51 final size:51
Alignment explanation
Indices: 11935348--11935504 Score: 199
Period size: 51 Copynumber: 3.0 Consensus size: 51
11935338 AAAAAAAATC
* * * *
11935348 TTTGAAAAATATTTAAACAAGAAAATTGATATTTCAACTTTTCTTCTTATTTT
1 TTTGAAAAAAATCTAAATAAGAAAATTGATATTTCAACTTTTCCTCTTA--TT
* *
11935401 TTTGAAAAATATTTAAATAAGAAAATTGATATTTCAACTTTTCCTCTTATT
1 TTTGAAAAAAATCTAAATAAGAAAATTGATATTTCAACTTTTCCTCTTATT
* * *
11935452 TTTGAAAAAAATCTAAAT-AGAAAAATTGATACTTCAACTTTTTCTTTTATT
1 TTTGAAAAAAATCTAAATAAG-AAAATTGATATTTCAACTTTTCCTCTTATT
11935503 TT
1 TT
11935505 AAAAATGGTT
Statistics
Matches: 96, Mismatches: 7, Indels: 4
0.90 0.07 0.04
Matches are distributed among these distances:
50 2 0.02
51 47 0.49
53 47 0.49
ACGTcount: A:0.39, C:0.10, G:0.06, T:0.46
Consensus pattern (51 bp):
TTTGAAAAAAATCTAAATAAGAAAATTGATATTTCAACTTTTCCTCTTATT
Found at i:11936209 original size:17 final size:17
Alignment explanation
Indices: 11936187--11936233 Score: 62
Period size: 17 Copynumber: 2.8 Consensus size: 17
11936177 ATAAGGGAAA
11936187 AAAGAAAATAAATAAAT
1 AAAGAAAATAAATAAAT
*
11936204 ATAGAAAAT-AATAAAT
1 AAAGAAAATAAATAAAT
11936220 AAATGAAAA-AAATA
1 AAA-GAAAATAAATA
11936234 TATACCTTGG
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
16 9 0.35
17 17 0.65
ACGTcount: A:0.74, C:0.00, G:0.06, T:0.19
Consensus pattern (17 bp):
AAAGAAAATAAATAAAT
Found at i:11936231 original size:20 final size:20
Alignment explanation
Indices: 11936183--11936233 Score: 59
Period size: 20 Copynumber: 2.5 Consensus size: 20
11936173 ACAAATAAGG
*
11936183 GAAAAAAGAAAATAAATAAAT
1 GAAAAAA-ATAATAAATAAAT
*
11936204 -ATAGAAAATAATAAATAAAT
1 GA-AAAAAATAATAAATAAAT
11936224 GAAAAAAATA
1 GAAAAAAATA
11936234 TATACCTTGG
Statistics
Matches: 25, Mismatches: 3, Indels: 5
0.76 0.09 0.15
Matches are distributed among these distances:
20 20 0.80
21 5 0.20
ACGTcount: A:0.75, C:0.00, G:0.08, T:0.18
Consensus pattern (20 bp):
GAAAAAAATAATAAATAAAT
Found at i:11937613 original size:33 final size:33
Alignment explanation
Indices: 11937571--11937636 Score: 114
Period size: 33 Copynumber: 2.0 Consensus size: 33
11937561 CATACAACTT
* *
11937571 TAAAAATAAGGGCTTTTCCATAATAGAGGCACA
1 TAAAAATAAGGGCTTCTCCATAATAAAGGCACA
11937604 TAAAAATAAGGGCTTCTCCATAATAAAGGCACA
1 TAAAAATAAGGGCTTCTCCATAATAAAGGCACA
11937637 CAACTTTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.23
Consensus pattern (33 bp):
TAAAAATAAGGGCTTCTCCATAATAAAGGCACA
Found at i:11937666 original size:39 final size:40
Alignment explanation
Indices: 11937604--11937693 Score: 137
Period size: 39 Copynumber: 2.3 Consensus size: 40
11937594 TAGAGGCACA
* * *
11937604 TAAAAATAAGGGCTTCTCCATAATAAAGGCACACAAC-TT
1 TAAAAATAAAGGCTCCTCAATAATAAAGGCACACAACTTT
*
11937643 TAAAAATAAAGGCTCCTCAATAATAGAGGCACACAACTTT
1 TAAAAATAAAGGCTCCTCAATAATAAAGGCACACAACTTT
11937683 TAAAAATAAAG
1 TAAAAATAAAG
11937694 ATAACACTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
39 33 0.72
40 13 0.28
ACGTcount: A:0.48, C:0.18, G:0.12, T:0.22
Consensus pattern (40 bp):
TAAAAATAAAGGCTCCTCAATAATAAAGGCACACAACTTT
Done.