Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 58 of 195
Found at i:11938915 original size:7 final size:7
Alignment explanation
Indices: 11938903--11938956 Score: 69
Period size: 7 Copynumber: 8.1 Consensus size: 7
11938893 AGGCCTATTT
11938903 TATTTTA
1 TATTTTA
11938910 TATTTTA
1 TATTTTA
11938917 TATTTT-
1 TATTTTA
11938923 TATTTTA
1 TATTTTA
11938930 TATTTT-
1 TATTTTA
11938936 TA-TTTA
1 TATTTTA
*
11938942 AATTTTA
1 TATTTTA
*
11938949 AATTTTA
1 TATTTTA
11938956 T
1 T
11938957 TTTATTTATT
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
5 3 0.07
6 9 0.21
7 30 0.71
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (7 bp):
TATTTTA
Found at i:11938928 original size:13 final size:13
Alignment explanation
Indices: 11938898--11938967 Score: 72
Period size: 13 Copynumber: 5.4 Consensus size: 13
11938888 TAGGTAGGCC
*
11938898 TATTTTAT-TTTA
1 TATTTTATATTTT
11938910 TATTTTATATTTT
1 TATTTTATATTTT
11938923 TATTTTATATTTT
1 TATTTTATATTTT
*
11938936 TA-TTTAAATTTT
1 TATTTTATATTTT
* *
11938948 AAATTTTATTTTATT
1 -TATTTTATATT-TT
11938963 TATTT
1 TATTT
11938968 ATTTTATCTT
Statistics
Matches: 48, Mismatches: 6, Indels: 6
0.80 0.10 0.10
Matches are distributed among these distances:
12 17 0.35
13 19 0.40
14 10 0.21
15 2 0.04
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (13 bp):
TATTTTATATTTT
Found at i:11938966 original size:4 final size:4
Alignment explanation
Indices: 11938952--11939140 Score: 95
Period size: 4 Copynumber: 45.8 Consensus size: 4
11938942 AATTTTAAAT
**
11938952 TTTA TTTTA TTTA TTTA TTTTA TCTTA GATA TTTA -TTA TTTA TTTA TTTA
1 TTTA -TTTA TTTA TTTA -TTTA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA
* *
11939002 -TTA TTACTA TTTA TTAATA TATA TTTA -TTA -TTA TTTA TCTA TTTA
1 TTTA TT--TA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA TTTA TTTA
* * * * *
11939047 TATA TTATAA TTTA TTTA -TTA TTATT TTTA TTTA TCTG TTAA TATT-
1 TTTA TT-T-A TTTA TTTA TTTA TT-TA TTTA TTTA TTTA TTTA T-TTA
* * * *
11939093 TTTA TTTA TTTA ATTA TTTT TTTA ATTA TCTA TTAATA TTT- TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TTTA TTT
11939141 TGATTTTATC
Statistics
Matches: 140, Mismatches: 26, Indels: 37
0.69 0.13 0.18
Matches are distributed among these distances:
3 20 0.14
4 89 0.64
5 17 0.12
6 14 0.10
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:11939032 original size:27 final size:28
Alignment explanation
Indices: 11938981--11939077 Score: 90
Period size: 27 Copynumber: 3.4 Consensus size: 28
11938971 TTATCTTAGA
* *
11938981 TATTTATTATTTATTTATTTATTATTAC
1 TATTTATTATATATATATTTATTATTAC
*
11939009 TATTTATTA-ATATATATTTATTATTATT
1 TATTTATTATATATATATTTATTATTA-C
* *
11939037 TATCTATTTATATATTATAATTTATTTATTAT
1 TATTTA-TTATATA-TAT-ATTTA-TTATTAC
11939069 TATTT-TTAT
1 TATTTATTAT
11939078 TTATCTGTTA
Statistics
Matches: 58, Mismatches: 5, Indels: 10
0.79 0.07 0.14
Matches are distributed among these distances:
27 15 0.26
28 14 0.24
29 3 0.05
30 7 0.12
31 3 0.05
32 10 0.17
33 6 0.10
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (28 bp):
TATTTATTATATATATATTTATTATTAC
Found at i:11939045 original size:60 final size:57
Alignment explanation
Indices: 11938952--11939138 Score: 157
Period size: 60 Copynumber: 3.2 Consensus size: 57
11938942 AATTTTAAAT
* *
11938952 TTTATTTTATTTATTTATT-TTATCTTAGATATTTATTATTTATTTATTTATTATTACTA
1 TTTA-TTTATATATTTATTATTAT-TTATATATTTATTATTTATTTATTTATTATTA-TA
* *
11939011 TTTATTAATATATATTTATTATTATTTATCTATTTATATATTATAATTTATTTATTATTATT
1 TTTATT--TATATATTTATTATTATTTATATATTTAT-TATT-T-ATTTATTTATTATTATA
* * * * * *
11939073 TTTATTTATCT-GTTAATATT-TTTATTTATTTAATTATTTTTTTAATTATCTATTAATA
1 TTTATTTATATATTTATTATTATTTATATATTT-ATTATTTATTTATTTAT-TATT-ATA
11939131 TTT-TTTAT
1 TTTATTTAT
11939139 TTTGATTTTA
Statistics
Matches: 108, Mismatches: 11, Indels: 20
0.78 0.08 0.14
Matches are distributed among these distances:
56 8 0.07
57 10 0.09
58 21 0.19
59 13 0.12
60 25 0.23
61 8 0.07
62 8 0.07
63 15 0.14
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (57 bp):
TTTATTTATATATTTATTATTATTTATATATTTATTATTTATTTATTTATTATTATA
Found at i:11939079 original size:20 final size:20
Alignment explanation
Indices: 11938901--11939140 Score: 128
Period size: 20 Copynumber: 11.9 Consensus size: 20
11938891 GTAGGCCTAT
11938901 TTTATT-TTATATTTTATATT-
1 TTTATTATTAT-TTTTAT-TTA
*
11938921 TTTATTTTATATTTTTATTTAAA
1 TTTATTAT-TATTTTTATTT--A
11938944 TTTTAAATT-TTA-TTTTATTTA
1 -TTT--ATTATTATTTTTATTTA
* **
11938965 TTTATT-TTA-TCTTAGATA
1 TTTATTATTATTTTTATTTA
*
11938983 TTTATTATT-TATTTATTTA
1 TTTATTATTATTTTTATTTA
*
11939002 -TTATTACTATTTATTAATATATA
1 TTTATTATTATTT-TT-AT-T-TA
*
11939025 TTTATTATTA--TTTATCTA
1 TTTATTATTATTTTTATTTA
* *
11939043 TTTA-TA-TATTATAATTTA
1 TTTATTATTATTTTTATTTA
11939061 TTTATTATTATTTTTATTTA
1 TTTATTATTATTTTTATTTA
* * *
11939081 TCTGTTAATATTTTTATTTA
1 TTTATTATTATTTTTATTTA
*
11939101 TTTAATTATT-TTTTTAATTA
1 TTT-ATTATTATTTTTATTTA
* *
11939121 TCTATTAATATTTTTTATTT
1 TTTATTATTA-TTTTTATTT
11939141 TGATTTTATC
Statistics
Matches: 171, Mismatches: 26, Indels: 45
0.71 0.11 0.19
Matches are distributed among these distances:
16 2 0.01
17 2 0.01
18 40 0.23
19 16 0.09
20 55 0.32
21 24 0.14
22 5 0.03
23 10 0.06
24 13 0.08
25 1 0.01
26 3 0.02
ACGTcount: A:0.29, C:0.02, G:0.01, T:0.68
Consensus pattern (20 bp):
TTTATTATTATTTTTATTTA
Found at i:11939111 original size:66 final size:68
Alignment explanation
Indices: 11938956--11939111 Score: 169
Period size: 66 Copynumber: 2.3 Consensus size: 68
11938946 TTAAATTTTA
* *
11938956 TTTTATTTATTTATTTTATCTTAGATATTTATTATTTATTTATTTATTATTACTATTTATTAATA
1 TTTTATTTATTTA-ATTAT-TTAGATATTTATAATTTATTTATTTATTATTACTATTTATTAATA
11939021 TATAT
64 TATAT
* ** **
11939026 TTATTA-TTATTT-ATCTATTTATATA-TTATAATTTATTTA-TTATTATTTTTATTTATCTGTT
1 TT-TTATTTATTTAAT-TATTTAGATATTTATAATTTATTTATTTATTATTACTATTTAT-TAAT
11939087 A-ATAT
63 ATATAT
11939092 TTTTATTTATTTAATTATTT
1 TTTTATTTATTTAATTATTT
11939112 TTTTAATTAT
Statistics
Matches: 74, Mismatches: 7, Indels: 14
0.78 0.07 0.15
Matches are distributed among these distances:
65 3 0.04
66 32 0.43
67 18 0.24
68 7 0.09
69 3 0.04
70 8 0.11
71 3 0.04
ACGTcount: A:0.29, C:0.03, G:0.01, T:0.67
Consensus pattern (68 bp):
TTTTATTTATTTAATTATTTAGATATTTATAATTTATTTATTTATTATTACTATTTATTAATATA
TAT
Found at i:11940010 original size:3 final size:3
Alignment explanation
Indices: 11939985--11940028 Score: 52
Period size: 3 Copynumber: 14.7 Consensus size: 3
11939975 ATTGTTTCAT
* * * *
11939985 TTA TTT TTA TTA TTG TTA CTA TTA TTA TTA TTA GTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
11940029 TATTGATTAG
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 33 1.00
ACGTcount: A:0.27, C:0.02, G:0.05, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:11940011 original size:15 final size:15
Alignment explanation
Indices: 11939991--11940028 Score: 58
Period size: 15 Copynumber: 2.5 Consensus size: 15
11939981 TCATTTATTT
*
11939991 TTATTATTGTTACTA
1 TTATTATTATTACTA
*
11940006 TTATTATTATTAGTA
1 TTATTATTATTACTA
11940021 TTATTATT
1 TTATTATT
11940029 TATTGATTAG
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.29, C:0.03, G:0.05, T:0.63
Consensus pattern (15 bp):
TTATTATTATTACTA
Found at i:11940173 original size:57 final size:58
Alignment explanation
Indices: 11940111--11940326 Score: 278
Period size: 57 Copynumber: 3.7 Consensus size: 58
11940101 TAAAATTAAA
* *
11940111 AAAAAAGTATTTTTGAGGAAAAGTTGAAAG-ATCAATTTTCCTTGAAAATAAACTTTTT
1 AAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTCT
* *
11940169 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAGTTTC-
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTCT
* * * * *
11940225 CAAAAATAGATTTTGAAGAAAAGTTGAAAGTATCAATTTTCCTCGAAATTAAAGTTTCT
1 AAAAAATA-TTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTCT
* *
11940284 AAAAAATA-TTTTGGGGAAATGTTGAAAGTATCAATTTTTCCTT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCCTT
11940327 TACAAAAGCA
Statistics
Matches: 137, Mismatches: 16, Indels: 10
0.84 0.10 0.06
Matches are distributed among these distances:
56 7 0.05
57 85 0.62
58 38 0.28
59 7 0.05
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (58 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTCT
Found at i:11944372 original size:17 final size:17
Alignment explanation
Indices: 11944325--11944366 Score: 68
Period size: 16 Copynumber: 2.5 Consensus size: 17
11944315 TGAAAAGGTG
*
11944325 AAAAAAAGAAAAAATAA
1 AAAAAAAGAAAAAAGAA
11944342 AAAAAAA-AAAAAAGAA
1 AAAAAAAGAAAAAAGAA
11944358 AAAAAAAGA
1 AAAAAAAGA
11944367 TGAAAGGAGG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 15 0.65
17 8 0.35
ACGTcount: A:0.90, C:0.00, G:0.07, T:0.02
Consensus pattern (17 bp):
AAAAAAAGAAAAAAGAA
Found at i:11944381 original size:1 final size:1
Alignment explanation
Indices: 11944325--11944364 Score: 53
Period size: 1 Copynumber: 40.0 Consensus size: 1
11944315 TGAAAAGGTG
* * *
11944325 AAAAAAAGAAAAAATAAAAAAAAAAAAAAAGAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
11944365 GATGAAAGGA
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
1 33 1.00
ACGTcount: A:0.93, C:0.00, G:0.05, T:0.03
Consensus pattern (1 bp):
A
Found at i:11945820 original size:43 final size:42
Alignment explanation
Indices: 11945772--11945853 Score: 112
Period size: 43 Copynumber: 1.9 Consensus size: 42
11945762 GCCTTTGAAC
* *
11945772 TCAAATGAGAAGCTTT-GAATTTTTAGATGTGAATCTCCAAAAT
1 TCAAATGAAAAGCTTTAG-ATTTTTAGATATGAAT-TCCAAAAT
*
11945815 TCAAATGAAAAGCTTTAGATTTTTGGATATGAATTCCAA
1 TCAAATGAAAAGCTTTAGATTTTTAGATATGAATTCCAA
11945854 GTTTGCCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
42 5 0.14
43 29 0.83
44 1 0.03
ACGTcount: A:0.38, C:0.11, G:0.16, T:0.35
Consensus pattern (42 bp):
TCAAATGAAAAGCTTTAGATTTTTAGATATGAATTCCAAAAT
Found at i:11946203 original size:40 final size:39
Alignment explanation
Indices: 11946159--11946577 Score: 270
Period size: 42 Copynumber: 10.2 Consensus size: 39
11946149 TTAAGGAACA
11946159 ATTTACTTTTCAAAGTTTTGGTGCCTCTGTTTAGAGGAGC
1 ATTTA-TTTTCAAAGTTTTGGTGCCTCTGTTTAGAGGAGC
** ** * * ** *
11946199 ATTTATTTTTGAAGTCATGGTGCTTCTGCTTAGAAAAGTA
1 ATTTATTTTCAAAGTTTTGGTGCCTCTGTTTAGAGGAG-C
* *
11946239 ATTTATTTTCAAAAGTTGTTGATGCCTCTATTTAGAGGAGCC
1 ATTTATTTTC-AAAGTT-TTGGTGCCTCTGTTTAGAGGAG-C
* * * *
11946281 ATTTATTTTCAAAGTTGTGATGCCTTTGTTTAGAGGATC
1 ATTTATTTTCAAAGTTTTGGTGCCTCTGTTTAGAGGAGC
* *
11946320 AATTTATTTTTAAAAGTTGTTGATGCCTCTGTTTAGAGGAGCC
1 -ATTTA-TTTTCAAAGTT-TTGGTGCCTCTGTTTAGAGGAG-C
* *
11946363 ATTTATTTTCAAAGTTGTGATGCCTCTGTTTAGAGGAGC
1 ATTTATTTTCAAAGTTTTGGTGCCTCTGTTTAGAGGAGC
* * *
11946402 AATTTATTTTTAAAAGTTGTT-GAGCCTCTGATTAGAGGAGC
1 -ATTTA-TTTTCAAAGTT-TTGGTGCCTCTGTTTAGAGGAGC
* * * * * * *
11946443 TTTGTTTATTTTTTAAAATTCGTAGAGCCTCTGATTAGAGGAGC
1 ---ATTTA-TTTTCAAAGTT-TTGGTGCCTCTGTTTAGAGGAGC
* * *
11946487 TATTTATTTTTCAAAAGTCGTT-GAGCCTCTGATTAGAGGAGCC
1 -ATTTA-TTTTC-AAAGT-TTTGGTGCCTCTGTTTAGAGGAG-C
* * *
11946530 ATTTATTTTCCAAAAGTCGTT-GAGCCTCTATTTAGAGGAGC
1 ATTTATTTT-C-AAAGT-TTTGGTGCCTCTGTTTAGAGGAGC
11946571 -TTTATTT
1 ATTTATTT
11946578 ATTTTCCAAA
Statistics
Matches: 313, Mismatches: 49, Indels: 34
0.79 0.12 0.09
Matches are distributed among these distances:
39 27 0.09
40 70 0.22
41 62 0.20
42 112 0.36
43 22 0.07
44 20 0.06
ACGTcount: A:0.25, C:0.13, G:0.21, T:0.42
Consensus pattern (39 bp):
ATTTATTTTCAAAGTTTTGGTGCCTCTGTTTAGAGGAGC
Found at i:11946324 original size:82 final size:82
Alignment explanation
Indices: 11946152--11946588 Score: 424
Period size: 82 Copynumber: 5.3 Consensus size: 82
11946142 ATGATTGTTA
* * * **
11946152 AGGAACAATTTACTTTTC-AAAGTT-TTGGTGCCTCTGTTTAGAGGAG-CATTTATTTTTGAAGT
1 AGGAGCAATTTA-TTTTCAAAAGTTGTTGATGCCTCTATTTAGAGGAGCCATTTATTTTCAAAGT
** * * *
11946214 CATGGTGCTTCTGCTTAG
65 TGTGATGCCTCTGTTTAG
** *
11946232 AAAAGTAATTTATTTTCAAAAGTTGTTGATGCCTCTATTTAGAGGAGCCATTTATTTTCAAAGTT
1 AGGAGCAATTTATTTTCAAAAGTTGTTGATGCCTCTATTTAGAGGAGCCATTTATTTTCAAAGTT
*
11946297 GTGATGCCTTTGTTTAG
66 GTGATGCCTCTGTTTAG
* * *
11946314 AGGATCAATTTATTTTTAAAAGTTGTTGATGCCTCTGTTTAGAGGAGCCATTTATTTTCAAAGTT
1 AGGAGCAATTTATTTTCAAAAGTTGTTGATGCCTCTATTTAGAGGAGCCATTTATTTTCAAAGTT
11946379 GTGATGCCTCTGTTTAG
66 GTGATGCCTCTGTTTAG
* ** *
11946396 AGGAGCAATTTATTTTTAAAAGTTGTTGA-GCCTCTGA-TTAGAGGAGCTTTGTTTATTTTTTAA
1 AGGAGCAATTTATTTTCAAAAGTTGTTGATGCCTCT-ATTTAGAGGAGC--CATTTA-TTTTCAA
* *
11946459 AATTCGTAGA-GCCTCTGATTAG
62 AGTT-GT-GATGCCTCTGTTTAG
* *
11946481 AGGAGCTATTTATTTTTCAAAAGTCGTTGA-GCCTCTGA-TTAGAGGAGCCATTTATTTTCCAAA
1 AGGAGCAATTTA-TTTTCAAAAGTTGTTGATGCCTCT-ATTTAGAGGAGCCATTTATTTT-C-AA
* *
11946544 AGTCGTTGA-GCCTCTATTTAG
62 AGTTG-TGATGCCTCTGTTTAG
*
11946565 AGGAGCTTTATTTATTTTCCAAAA
1 AGGAGC--AATTTATTTT-CAAAA
11946589 ATCATTGAGC
Statistics
Matches: 303, Mismatches: 38, Indels: 26
0.83 0.10 0.07
Matches are distributed among these distances:
79 5 0.02
80 14 0.05
81 36 0.12
82 129 0.43
83 8 0.03
84 32 0.11
85 33 0.11
86 46 0.15
ACGTcount: A:0.26, C:0.13, G:0.20, T:0.41
Consensus pattern (82 bp):
AGGAGCAATTTATTTTCAAAAGTTGTTGATGCCTCTATTTAGAGGAGCCATTTATTTTCAAAGTT
GTGATGCCTCTGTTTAG
Found at i:11946528 original size:86 final size:85
Alignment explanation
Indices: 11946239--11946828 Score: 457
Period size: 82 Copynumber: 7.0 Consensus size: 85
11946229 TAGAAAAGTA
* *
11946239 ATTTA-TTTTCAAAAGTTGTTGATGCCTCT-ATTTAGAGGAGC--CATTTATTTTCAAAGTT-G-
1 ATTTATTTTTCAAAAGTCGTTGA-GCCTCTGA-TTAGAGGAGCTTCATTTATTTTCAAAATTCGT
* * * *
11946298 TGATGCCTTTGTTTAGAGGATCA
64 TGA-GCCTCTGATTAGAGGAGCT
* * *
11946321 ATTTATTTTT-AAAAGTTGTTGATGCCTCTGTTTAGAGGAGC--CATTTATTTTCAAAGTT-G-T
1 ATTTATTTTTCAAAAGTCGTTGA-GCCTCTGATTAGAGGAGCTTCATTTATTTTCAAAATTCGTT
* *
11946381 GATGCCTCTGTTTAGAGGAGCA
65 GA-GCCTCTGATTAGAGGAGCT
* ** * *
11946403 ATTTATTTTT-AAAAGTTGTTGAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTTAAAATTCGTA
1 ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTCATTTA-TTTTCAAAATTCGTT
11946467 GAGCCTCTGATTAGAGGAGCT
65 GAGCCTCTGATTAGAGGAGCT
*
11946488 ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGC--CATTTATTTTCCAAAAGTCGTT
1 ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTCATTTATTTT-CAAAATTCGTT
11946551 GAGCCTCT-ATTTAGAGGAGCTTT
65 GAGCCTCTGA-TTAGAGGAGC--T
* * * * *
11946574 ATTTATTTTCCAAAAATCATTGAGCTTCTG-TTAGA-GAGCTTCATTTATTTTCAAAAGTCGTTG
1 ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTCATTTATTTTCAAAATTCGTTG
* * * **
11946637 AGCCTTTGTTTAGATGAATT
66 AGCCTCTGATTAGAGGAGCT
* * * * * * * *
11946657 GTTTATTTTTC-AAAGTCATAGATCCTCTAATTAGAGGAGCTTTATTTATCTTTC-AAAGTCGTA
1 ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTCATTTAT-TTTCAAAATTCGTT
* *
11946720 GAGCCTCTAATTAGATGAGCTTT
65 GAGCCTCTGATTAGAGGAGC--T
* ** * * * * ** *
11946743 GTTTATCCTTC-AAAGTCATAGAGCCTCCGATTAGAGAAGCTTTGTTTATATTTTTCAAAGTT-G
1 ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGC-TTCATT-TA-TTTTCAAAATTCG
*
11946806 TTGAGCCTCTGCTTAGAGGAGCT
63 TTGAGCCTCTGATTAGAGGAGCT
11946829 TTGATCAAAA
Statistics
Matches: 430, Mismatches: 54, Indels: 44
0.81 0.10 0.08
Matches are distributed among these distances:
81 17 0.04
82 108 0.25
83 28 0.07
84 78 0.18
85 62 0.14
86 104 0.24
87 4 0.01
88 25 0.06
89 4 0.01
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (85 bp):
ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCTTCATTTATTTTCAAAATTCGTTG
AGCCTCTGATTAGAGGAGCT
Found at i:11946638 original size:41 final size:42
Alignment explanation
Indices: 11946239--11946828 Score: 419
Period size: 42 Copynumber: 14.0 Consensus size: 42
11946229 TAGAAAAGTA
*
11946239 ATTTATTTTCAAAAGTTGTTGATGCCTCT-ATTTAGAGGAGC-C
1 ATTTATTTTCAAAAGTCGTTGA-GCCTCTGA-TTAGAGGAGCTC
* * *
11946281 ATTTATTTTC-AAAGTTG-TGATGCCTTTGTTTAGAGGA--TC
1 ATTTATTTTCAAAAGTCGTTGA-GCCTCTGATTAGAGGAGCTC
* * *
11946320 AATTTATTTTTAAAAGTTGTTGATGCCTCTGTTTAGAGGAGC-C
1 -ATTTATTTTCAAAAGTCGTTGA-GCCTCTGATTAGAGGAGCTC
* * *
11946363 ATTTATTTTC-AAAGTTG-TGATGCCTCTGTTTAGAGGAGC-A
1 ATTTATTTTCAAAAGTCGTTGA-GCCTCTGATTAGAGGAGCTC
* * *
11946403 ATTTATTTTTAAAAGTTGTTGAGCCTCTGATTAGAGGAGCTTT
1 ATTTATTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGC-TC
* * * *
11946446 GTTTATTTTTTAAAATTCGTAGAGCCTCTGATTAGAGGAGCT-
1 ATTTA-TTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCTC
11946488 ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGC-C
1 ATTTA-TTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCTC
*
11946530 ATTTATTTTCCAAAAGTCGTTGAGCCTCT-ATTTAGAGGAGCTTT
1 ATTTATTTT-CAAAAGTCGTTGAGCCTCTGA-TTAGAGGAGC-TC
* * *
11946574 ATTTATTTTCCAAAAATCATTGAGCTTCTG-TTAGA-GAGCTTC
1 ATTTATTTT-CAAAAGTCGTTGAGCCTCTGATTAGAGGAGC-TC
* * * * *
11946616 ATTTATTTTCAAAAGTCGTTGAGCCTTTGTTTAGATGA-ATT
1 ATTTATTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCTC
* * * * * *
11946657 GTTTATTTTTC-AAAGTCATAGATCCTCTAATTAGAGGAGCTTT
1 ATTTA-TTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGC-TC
* * * *
11946700 ATTTATCTTTC-AAAGTCGTAGAGCCTCTAATTAGATGAGCTTT
1 ATTTAT-TTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGC-TC
* * * * * * *
11946743 GTTTATCCTTC-AAAGTCATAGAGCCTCCGATTAGAGAAGCTTTG
1 ATTTAT-TTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGC--TC
* * *
11946787 TTTATATTTTTC-AAAGTTGTTGAGCCTCTGCTTAGAGGAGCT
1 ATT-TA-TTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCT
11946829 TTGATCAAAA
Statistics
Matches: 464, Mismatches: 57, Indels: 53
0.81 0.10 0.09
Matches are distributed among these distances:
39 1 0.00
40 57 0.12
41 91 0.20
42 138 0.30
43 86 0.19
44 62 0.13
45 28 0.06
46 1 0.00
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (42 bp):
ATTTATTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCTC
Found at i:11946717 original size:169 final size:166
Alignment explanation
Indices: 11946239--11946784 Score: 493
Period size: 169 Copynumber: 3.3 Consensus size: 166
11946229 TAGAAAAGTA
* ** *
11946239 ATTTATTTTCAAAAGTTGTTGATGCCTCT-ATTTAGAGGAGC--CATTTATTTTC-AAAGTTG-T
1 ATTTATTTTCAAAAATCATTGA-GCCTCTGA-TTAGAGGAGCTTCATTTATTTTCAAAAGTCGTT
* * * * *
11946299 GATGCCTTTGTTTAGAGGATCAATTTATTTTTAAAAGTTGTTGATGCCTCTGTTTAGAGGAGCCA
64 GA-GCCTTTGTTTAGAGAAT-TATTTATTTTTCAAAGTCGTTGAT-CCTCTGATTAGAGGAGCCA
* * *
11946364 TTTATTTTCAAAGTTG-TGATGCCTCTGTTTAGAGGAGC--A
126 TTTATTTTCAAAGTCGTTGA-GCCTCTATTTAGAGGAGCTTT
* * ** ** * * *
11946403 ATTTATTTTTAAAAGTTGTTGAGCCTCTGATTAGAGGAGCTTTGTTTATTTTTTAAAATTCGTAG
1 ATTTATTTTCAAAAATCATTGAGCCTCTGATTAGAGGAGCTTCATTTA-TTTTCAAAAGTCGTTG
* * ** *
11946468 AGCCTCTGATTAGAGGAGCTATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATT
65 AGCCTTTGTTTAGA-GAATTATTTATTTTTC-AAAGTCGTTGATCCTCTGATTAGAGGAGCCATT
11946533 TATTTTCCAAAAGTCGTTGAGCCTCTATTTAGAGGAGCTTT
128 TATTTT-C-AAAGTCGTTGAGCCTCTATTTAGAGGAGCTTT
*
11946574 ATTTATTTTCCAAAAATCATTGAGCTTCTG-TTAGA-GAGCTTCATTTATTTTCAAAAGTCGTTG
1 ATTTATTTT-CAAAAATCATTGAGCCTCTGATTAGAGGAGCTTCATTTATTTTCAAAAGTCGTTG
* * * * *
11946637 AGCCTTTGTTTAGATGAATTGTTTATTTTTCAAAGTCATAGATCCTCTAATTAGAGGAGCTTTAT
65 AGCCTTTGTTTAGA-GAATTATTTATTTTTCAAAGTCGTTGATCCTCTGATTAGAGGAGC--CAT
* * *
11946702 TTATCTTTCAAAGTCGTAGAGCCTCTAATTAGATGAGCTTT
127 TTAT-TTTCAAAGTCGTTGAGCCTCTATTTAGAGGAGCTTT
* * * * * *
11946743 GTTTATCCTTC-AAAGTCATAGAGCCTCCGATTAGAGAAGCTT
1 ATTTAT-TTTCAAAAATCATTGAGCCTCTGATTAGAGGAGCTT
11946785 TGTTTATATT
Statistics
Matches: 311, Mismatches: 51, Indels: 34
0.79 0.13 0.09
Matches are distributed among these distances:
163 16 0.05
164 22 0.07
165 4 0.01
166 4 0.01
167 52 0.17
168 53 0.17
169 101 0.32
170 27 0.09
171 17 0.05
172 15 0.05
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (166 bp):
ATTTATTTTCAAAAATCATTGAGCCTCTGATTAGAGGAGCTTCATTTATTTTCAAAAGTCGTTGA
GCCTTTGTTTAGAGAATTATTTATTTTTCAAAGTCGTTGATCCTCTGATTAGAGGAGCCATTTAT
TTTCAAAGTCGTTGAGCCTCTATTTAGAGGAGCTTT
Found at i:11946740 original size:127 final size:125
Alignment explanation
Indices: 11946239--11946778 Score: 365
Period size: 127 Copynumber: 4.3 Consensus size: 125
11946229 TAGAAAAGTA
* * **
11946239 ATTTA-TTTTCAAAAGTTGTTGATGCCTCT-ATTTAGAGGAGCCATTTATTTT-C-AAAGTTGT-
1 ATTTATTTTTCAAAAGTCGTTGA-GCCTCTGA-TTAGAGGAACCATTTATTTTCCAAAAGTCATA
* ** ** * * * *
11946299 GATGCCTTTGTTTAGAGGA--TCAATTTATTTTTAAAAGTTGTTGATGCCTCTGTTTAGAGGAGC
64 GA-GCCTCTAATTAGAGGAGCTTTATTTATTTTCAAAA-TCGTAGA-GCCTCT-ATTAGA-GAGC
*
11946362 -C
124 TT
* * * * * ** *
11946363 ATTTA-TTTTC-AAAGTTG-TGATGCCTCTGTTTAGAGGAGCAATTTATTTT-TAAAAGTTGTTG
1 ATTTATTTTTCAAAAGTCGTTGA-GCCTCTGATTAGAGGAACCATTTATTTTCCAAAAGTCATAG
* * *
11946424 AGCCTCTGATTAGAGGAGCTTTGTTTATTTTTTAAAATTCGTAGAGCCTCTGATTAGAGGAGC-T
65 AGCCTCTAATTAGAGGAGCTTTATTTA-TTTTCAAAA-TCGTAGAGCCTCT-ATTAGA-GAGCTT
* * *
11946488 ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAGCCATTTATTTTCCAAAAGTCGTTGA
1 ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAACCATTTATTTTCCAAAAGTCATAGA
* * * * *
11946553 GCCTCTATTTAGAGGAGCTTTATTTATTTTCCAAAAATCATTGAGCTTCTGTTAGAGAGCTT
66 GCCTCTAATTAGAGGAGCTTTATTTATTTT-C-AAAATCGTAGAGCCTCTATTAGAGAGCTT
* * * *** *
11946615 CATTTA-TTTTCAAAAGTCGTTGAGCCTTTGTTTAGATGAATTGTTTATTTTTC-AAAGTCATAG
1 -ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAACCATTTATTTTCCAAAAGTCATAG
* *
11946678 ATCCTCTAATTAGAGGAGCTTTATTTATCTTTCAAAGTCGTAGAGCCTCTAATTAGATGAGCTTT
65 AGCCTCTAATTAGAGGAGCTTTATTTAT-TTTCAAAATCGTAGAGCCTCT-ATTAGA-GAGC-TT
* ** * * *
11946743 GTTTATCCTTC-AAAGTCATAGAGCCTCCGATTAGAG
1 ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAG
11946779 AAGCTTTGTT
Statistics
Matches: 345, Mismatches: 52, Indels: 35
0.80 0.12 0.08
Matches are distributed among these distances:
122 29 0.08
123 29 0.08
124 12 0.03
125 40 0.12
126 63 0.18
127 111 0.32
128 57 0.17
129 4 0.01
ACGTcount: A:0.26, C:0.14, G:0.19, T:0.41
Consensus pattern (125 bp):
ATTTATTTTTCAAAAGTCGTTGAGCCTCTGATTAGAGGAACCATTTATTTTCCAAAAGTCATAGA
GCCTCTAATTAGAGGAGCTTTATTTATTTTCAAAATCGTAGAGCCTCTATTAGAGAGCTT
Found at i:11946861 original size:10 final size:10
Alignment explanation
Indices: 11946846--11946883 Score: 51
Period size: 10 Copynumber: 3.9 Consensus size: 10
11946836 AAATTTTAAC
11946846 AAAAAAAAAT
1 AAAAAAAAAT
11946856 AAAAAAAAA-
1 AAAAAAAAAT
* *
11946865 CAAAAAAAGT
1 AAAAAAAAAT
11946875 AAAAAAAAA
1 AAAAAAAAA
11946884 GAAAGGGTTA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
9 7 0.30
10 16 0.70
ACGTcount: A:0.89, C:0.03, G:0.03, T:0.05
Consensus pattern (10 bp):
AAAAAAAAAT
Found at i:11946871 original size:19 final size:19
Alignment explanation
Indices: 11946847--11946883 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
11946837 AATTTTAACA
11946847 AAAAAAAATAAAAAAAAAC
1 AAAAAAAATAAAAAAAAAC
*
11946866 AAAAAAAGTAAAAAAAAA
1 AAAAAAAATAAAAAAAAA
11946884 GAAAGGGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.89, C:0.03, G:0.03, T:0.05
Consensus pattern (19 bp):
AAAAAAAATAAAAAAAAAC
Found at i:11947038 original size:5 final size:5
Alignment explanation
Indices: 11947028--11947096 Score: 61
Period size: 5 Copynumber: 13.0 Consensus size: 5
11947018 AGGTAGGCCC
*
11947028 ATTTT ATTTT ATTTT ATTTT -TTAT ATTTTAT ATTTGT ATTTT -TATTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT A-TTT-T ATTT-T ATTTT AT-TTT
11947075 ATATTT ATTTAT ATTTT ATTTT
1 AT-TTT ATTT-T ATTTT ATTTT
11947097 TTTATCTTAG
Statistics
Matches: 55, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
4 4 0.07
5 27 0.49
6 22 0.40
7 2 0.04
ACGTcount: A:0.23, C:0.00, G:0.01, T:0.75
Consensus pattern (5 bp):
ATTTT
Found at i:11947051 original size:7 final size:7
Alignment explanation
Indices: 11947039--11947098 Score: 52
Period size: 7 Copynumber: 8.6 Consensus size: 7
11947029 TTTTATTTTA
11947039 TTTTATT
1 TTTTATT
*
11947046 TTTTATA
1 TTTTATT
11947053 TTTTATAT
1 TTTTAT-T
*
11947061 TTGTA-T
1 TTTTATT
11947067 TTTTA-T
1 TTTTATT
*
11947073 TTATATT
1 TTTTATT
*
11947080 TATTTATA
1 T-TTTATT
11947088 TTTTATT
1 TTTTATT
11947095 TTTT
1 TTTT
11947099 TATCTTAGGT
Statistics
Matches: 42, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
6 10 0.24
7 23 0.55
8 9 0.21
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.77
Consensus pattern (7 bp):
TTTTATT
Found at i:11947067 original size:6 final size:6
Alignment explanation
Indices: 11947030--11947225 Score: 60
Period size: 6 Copynumber: 29.8 Consensus size: 6
11947020 GTAGGCCCAT
* * *
11947030 TTTAT- TTTAT- TTTATTT TTTATA TTTTATA TTTGTA TTTTTA TTTATA
1 TTTATA TTTATA TTTA-TA TTTATA -TTTATA TTTATA TTTATA TTTATA
* *
11947078 -TT-TA TTTATA TTTTATT TTTTTA TCTTAGGTA TTTATTA TTTATTTA
1 TTTATA TTTATA -TTTATA TTTATA T-TTA--TA TTTA-TA TTTA--TA
* *
11947125 TTAATACTA TTTAT- TATTATA TATATT TTTATTA TTTATCTA TTTATA
1 TT--TA-TA TTTATA T-TTATA TTTATA TTTA-TA TTTA--TA TTTATA
* * * *
11947173 TATTATAA TTTATC TATTATTA TTTTTA TTTATC TGTTAATA TTTTTA
1 T-TTAT-A TTTATA T-TTA-TA TTTATA TTTATA T-TT-ATA TTTATA
11947221 TTTAT
1 TTTAT
11947226 TTAATTATTT
Statistics
Matches: 146, Mismatches: 23, Indels: 43
0.69 0.11 0.20
Matches are distributed among these distances:
4 2 0.01
5 14 0.10
6 52 0.36
7 48 0.33
8 21 0.14
9 7 0.05
10 2 0.01
ACGTcount: A:0.27, C:0.03, G:0.02, T:0.68
Consensus pattern (6 bp):
TTTATA
Found at i:11947083 original size:4 final size:4
Alignment explanation
Indices: 11947068--11947235 Score: 71
Period size: 4 Copynumber: 41.8 Consensus size: 4
11947058 TATTTGTATT
* * **
11947068 TTTA TTTA --TA TTTA TTTA TAT- TTTA TTTT TTTA TCTTA GGTA TTTA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA TTTA
* * * *
11947114 -TTA TTTA TTTA TTAA TACTA TTTA -TTA TTATA TATA TTTT TATTA TTTA
1 TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TT-TA TTTA TTTA T-TTA TTTA
* * * * * * *
11947163 TCTA TTTA TATA TTATAA TTTA TCTA -TTA TTATT TTTA TTTA TCTG TTAA
1 TTTA TTTA TTTA TT-T-A TTTA TTTA TTTA TT-TA TTTA TTTA TTTA TTTA
*
11947213 TATT- TTTA TTTA TTTA ATTA TTT
1 T-TTA TTTA TTTA TTTA TTTA TTT
11947236 TCTTTTAATT
Statistics
Matches: 117, Mismatches: 32, Indels: 30
0.65 0.18 0.17
Matches are distributed among these distances:
2 2 0.02
3 12 0.10
4 83 0.71
5 17 0.15
6 3 0.03
ACGTcount: A:0.29, C:0.03, G:0.02, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:11947092 original size:42 final size:41
Alignment explanation
Indices: 11947030--11947205 Score: 112
Period size: 42 Copynumber: 4.1 Consensus size: 41
11947020 GTAGGCCCAT
*
11947030 TTTAT-TTTATTTTATTTTTTATATTTTATATTTGTATTTTTA
1 TTTATATTTA-TTTATATTTTAT-TTTTATATTTGTATTTTTA
*
11947072 TTTATATTTATTTATATTTTATTTTTTTATCTTAGGTATTTATTA
1 TTTATATTTATTTATATTTTATTTTTATAT-TT--GTATTT-TTA
* * *
11947117 -TT-TATTTATTAATACTATTTATTATTATA--TATATTTTTA
1 TTTATATTTATTTATA-T-TTTATTTTTATATTTGTATTTTTA
* * * *
11947156 TTATTTATCTATTTATATATTATAATTTATCTATTAT-TATTTTTA
1 TT-TATATTTATTTATAT-TT-T-ATTTTTATATT-TGTATTTTTA
11947201 TTTAT
1 TTTAT
11947206 CTGTTAATAT
Statistics
Matches: 107, Mismatches: 12, Indels: 28
0.73 0.08 0.19
Matches are distributed among these distances:
39 3 0.03
40 6 0.06
41 12 0.11
42 30 0.28
43 21 0.20
44 11 0.10
45 23 0.21
46 1 0.01
ACGTcount: A:0.27, C:0.02, G:0.02, T:0.69
Consensus pattern (41 bp):
TTTATATTTATTTATATTTTATTTTTATATTTGTATTTTTA
Found at i:11947152 original size:57 final size:60
Alignment explanation
Indices: 11947091--11947202 Score: 135
Period size: 57 Copynumber: 1.9 Consensus size: 60
11947081 ATTTATATTT
*
11947091 TATTTTT-TTATCTTAGGTATTTAT-TATT-T-ATTTAT-TAATACTATTTATTATTATATA
1 TATTTTTATTAT-TTAGCTATTTATATATTATAATTTATCTAATACTATTT-TTATTATATA
* * *
11947148 TATTTTTATTATTTATCTATTTATATATTATAATTTATCTATTATTATTTTTATT
1 TATTTTTATTATTTAGCTATTTATATATTATAATTTATCTAATACTATTTTTATT
11947203 TATCTGTTAA
Statistics
Matches: 46, Mismatches: 4, Indels: 7
0.81 0.07 0.12
Matches are distributed among these distances:
57 17 0.37
58 8 0.17
59 1 0.02
60 11 0.24
61 9 0.20
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (60 bp):
TATTTTTATTATTTAGCTATTTATATATTATAATTTATCTAATACTATTTTTATTATATA
Found at i:11947163 original size:22 final size:22
Alignment explanation
Indices: 11947110--11947228 Score: 90
Period size: 22 Copynumber: 5.5 Consensus size: 22
11947100 ATCTTAGGTA
* *
11947110 TTTATTATTTATTTATTAATACTA
1 TTTATTATTTATCTATT-ATA-TT
11947134 TTTATTA-TTA--TA-TATATT
1 TTTATTATTTATCTATTATATT
11947152 TTTATTATTTATCTATT-TATAT
1 TTTATTATTTATCTATTATAT-T
* * *
11947174 ATTATAATTTATCTATTAT-TA
1 TTTATTATTTATCTATTATATT
*
11947195 TTT-TTATTTATCTGTTAATATT
1 TTTATTATTTATCTATT-ATATT
11947217 TTTATTTATTTA
1 TTTA-TTATTTA
11947229 ATTATTTTCT
Statistics
Matches: 77, Mismatches: 8, Indels: 20
0.73 0.08 0.19
Matches are distributed among these distances:
18 8 0.10
19 6 0.08
20 12 0.16
21 11 0.14
22 22 0.29
23 4 0.05
24 14 0.18
ACGTcount: A:0.30, C:0.03, G:0.01, T:0.66
Consensus pattern (22 bp):
TTTATTATTTATCTATTATATT
Found at i:11947207 original size:42 final size:43
Alignment explanation
Indices: 11947108--11947214 Score: 123
Period size: 42 Copynumber: 2.5 Consensus size: 43
11947098 TTATCTTAGG
* *
11947108 TATTTATTATTTATTTATTAATACTATTTATTATTATATATAT
1 TATTTATTATTTATCTATTAATACTATTTAATATTATATATAT
* *
11947151 T-TTTATTATTTATCTATTTATA-TATTATAAT-TTATCTATTAT
1 TATTTATTATTTATCTATTAATACTATT-TAATATTATATA-TAT
*
11947193 TATTT-TTATTTATCTGTTAATA
1 TATTTATTATTTATCTATTAATA
11947215 TTTTTATTTA
Statistics
Matches: 55, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
41 10 0.18
42 41 0.75
43 4 0.07
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.64
Consensus pattern (43 bp):
TATTTATTATTTATCTATTAATACTATTTAATATTATATATAT
Found at i:11947242 original size:42 final size:42
Alignment explanation
Indices: 11947114--11947266 Score: 118
Period size: 42 Copynumber: 3.6 Consensus size: 42
11947104 TAGGTATTTA
* * *
11947114 TTATTTATTTATTAATACTATTTA-TTA-TTATATATATTTTTA
1 TTATTTATCTATTAATACTTTTTATTTATTTA-AT-TATTTTTT
* * * *
11947156 TTATTTATCTATTTATATA-TTATAATTTATCT-ATTATTATTT
1 TTATTTATCTA-TTA-ATACTTTTTATTTATTTAATTATTTTTT
*
11947198 TTATTTATCTGTTAATA-TTTTTATTTATTTAATTATTTTCTT
1 TTATTTATCTATTAATACTTTTTATTTATTTAATTATTTT-TT
* * * *
11947240 TTAATTACCTATTAACATTTTTTATTT
1 TTATTTATCTATTAATACTTTTTATTT
11947267 TGATTTTATC
Statistics
Matches: 88, Mismatches: 16, Indels: 13
0.75 0.14 0.11
Matches are distributed among these distances:
40 13 0.15
41 10 0.11
42 41 0.47
43 17 0.19
44 6 0.07
45 1 0.01
ACGTcount: A:0.29, C:0.05, G:0.01, T:0.65
Consensus pattern (42 bp):
TTATTTATCTATTAATACTTTTTATTTATTTAATTATTTTTT
Found at i:11947589 original size:25 final size:24
Alignment explanation
Indices: 11947542--11947591 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
11947532 TCGATGAAAA
***
11947542 TTTTTTAGAATTTTTGGTGAATTT
1 TTTTTTAGAATTTTTGAAAAATTT
11947566 TTTTTTAGAAATTTTTGAAAAATTT
1 TTTTTTAG-AATTTTTGAAAAATTT
11947591 T
1 T
11947592 CAGATTTCGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 8 0.36
25 14 0.64
ACGTcount: A:0.28, C:0.00, G:0.12, T:0.60
Consensus pattern (24 bp):
TTTTTTAGAATTTTTGAAAAATTT
Found at i:11947633 original size:32 final size:31
Alignment explanation
Indices: 11947596--11947664 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
11947586 AATTTTCAGA
*
11947596 TTTCGGTTGAATTTTCTGGCAAAGTTTGAATT
1 TTTCGG-TGAATTTTCTGACAAAGTTTGAATT
* * *
11947628 TTTCGGTGACTTTTTTGACCAAGTTTGAATT
1 TTTCGGTGAATTTTCTGACAAAGTTTGAATT
11947659 TTTCGG
1 TTTCGG
11947665 CTAGCTTCTC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
31 27 0.82
32 6 0.18
ACGTcount: A:0.19, C:0.12, G:0.22, T:0.48
Consensus pattern (31 bp):
TTTCGGTGAATTTTCTGACAAAGTTTGAATT
Found at i:11948132 original size:12 final size:12
Alignment explanation
Indices: 11948104--11948144 Score: 55
Period size: 12 Copynumber: 3.2 Consensus size: 12
11948094 TGTTCCTAAG
11948104 TTTTTATTTATTTA
1 TTTTTA-TTA-TTA
11948118 TTTTTATTATTA
1 TTTTTATTATTA
*
11948130 TTTGTATTATTA
1 TTTTTATTATTA
11948142 TTT
1 TTT
11948145 ATTGATTAGA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
12 17 0.65
13 3 0.12
14 6 0.23
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (12 bp):
TTTTTATTATTA
Found at i:11948332 original size:117 final size:116
Alignment explanation
Indices: 11948211--11948431 Score: 320
Period size: 117 Copynumber: 1.9 Consensus size: 116
11948201 TTAAATAAAA
* *
11948211 TTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCCTTGAAAAT-GAGCTTTCT
1 TTCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCCTTGAAAATAAAG-TTTCT
*
11948274 AAAAAAATGTTTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGT
65 -AAAAAAT-ATTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGT
** ** *
11948328 TTCAAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTTGAAATTAAAGTTTCTA
1 TTCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCCTTGAAAATAAAGTTTCTA
*
11948393 AAAAATATTTTGGGGAAAAGTTGAAAGTATCAATTTTTC
66 AAAAATATTTTGGAGAAAAGTTGAAAGTATCAATTTTTC
11948432 CTATACAAAA
Statistics
Matches: 93, Mismatches: 9, Indels: 5
0.87 0.08 0.05
Matches are distributed among these distances:
116 31 0.33
117 44 0.47
118 16 0.17
119 2 0.02
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.38
Consensus pattern (116 bp):
TTCAAAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCCTTGAAAATAAAGTTTCTA
AAAAATATTTTGGAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGT
Found at i:11948364 original size:58 final size:57
Alignment explanation
Indices: 11948216--11948431 Score: 285
Period size: 59 Copynumber: 3.7 Consensus size: 57
11948206 TAAAATTCAA
* *
11948216 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATGAGCTTTCT
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAG-TTTCT
* *
11948274 AAAAAAATGTTTTTG-GAGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAGTTTC-
1 -AAAAAATATTTTTGAG-GAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTCT
* *
11948331 AAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTTTTTGAAATTAAAGTTTCT
1 AAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTTCTTGAAAAT-AAGTTTCT
*
11948392 AAAAAATA-TTTTGGGGAAAAGTTGAAAGTATCAATTTTTC
1 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTC
11948432 CTATACAAAA
Statistics
Matches: 140, Mismatches: 10, Indels: 16
0.84 0.06 0.10
Matches are distributed among these distances:
56 7 0.05
57 5 0.04
58 55 0.39
59 59 0.42
60 7 0.05
61 7 0.05
ACGTcount: A:0.41, C:0.06, G:0.16, T:0.38
Consensus pattern (57 bp):
AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTGAAAATAAGTTTCT
Found at i:11957460 original size:2 final size:2
Alignment explanation
Indices: 11957453--11957479 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
11957443 TAACCGTACG
11957453 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
11957480 GATGACTTTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:11961423 original size:55 final size:53
Alignment explanation
Indices: 11961335--11961583 Score: 176
Period size: 49 Copynumber: 4.8 Consensus size: 53
11961325 CTTTTTCCTT
* * * *
11961335 AAAAATGTCTAAATAGGAAAATTGATATGTCAACTTTTCC-CAAAAAAAATCTTTG
1 AAAAATATTTAAATAAGAAAATTGATATTTCAACTTTTCCTC---AAAAATCTTTG
* **
11961390 AAAAATATTTAAATAAGAAAATTGATATTTCAACTTTTCCTCATATTTCTTTG
1 AAAAATATTTAAATAAGAAAATTGATATTTCAACTTTTCCTCAAAAATCTTTG
* * * ** *
11961443 AAATATATTTAAAT-AGAAAATTTGATATTTTAATTTTTTCCT---TTATTTTTG
1 AAAAATATTTAAATAAGAAAA-TTGATATTTCAA-CTTTTCCTCAAAAATCTTTG
* * * *** * *
11961494 AAAAACATTTAAATAGGAAAATTGATATTTCCA-TTTT--T-TTTATTTTTTG
1 AAAAATATTTAAATAAGAAAATTGATATTTCAACTTTTCCTCAAAAATCTTTG
*
11961543 AAAAATATTTAAATGAA-AAAATTAATATTTCAACTTTTCCT
1 AAAAATATTTAAAT-AAGAAAATTGATATTTCAACTTTTCCT
11961584 TTTATTTTGG
Statistics
Matches: 160, Mismatches: 24, Indels: 23
0.77 0.12 0.11
Matches are distributed among these distances:
47 1 0.01
49 38 0.24
50 5 0.03
51 28 0.17
52 12 0.08
53 32 0.20
54 7 0.04
55 36 0.22
56 1 0.01
ACGTcount: A:0.41, C:0.09, G:0.07, T:0.43
Consensus pattern (53 bp):
AAAAATATTTAAATAAGAAAATTGATATTTCAACTTTTCCTCAAAAATCTTTG
Found at i:11961468 original size:53 final size:50
Alignment explanation
Indices: 11961386--11961591 Score: 238
Period size: 49 Copynumber: 4.0 Consensus size: 50
11961376 AAAAAAAATC
*
11961386 TTTGAAAAATATTTAAATAAGAAAATTGATATTTCAACTTTTCCTCATATTT
1 TTTGAAAAATATTTAAAT-AGAAAATTGATATTTCAACTTTTCCT-TTATTT
* * *
11961438 CTTTGAAATATATTTAAATAGAAAATTTGATATTTTAATTTTTTCCTTTA-TT
1 -TTTGAAAAATATTTAAATAGAAAA-TTGATATTTCAA-CTTTTCCTTTATTT
* * *
11961490 TTTGAAAAACATTTAAATAGGAAAATTGATATTTCCA-TTTT-TTTTATTT
1 TTTGAAAAATATTTAAATA-GAAAATTGATATTTCAACTTTTCCTTTATTT
* *
11961539 TTTGAAAAATATTTAAATGAAAAAATTAATATTTCAACTTTTCCTTTTATTT
1 TTTGAAAAATATTTAAAT-AGAAAATTGATATTTCAACTTTTCC-TTTATTT
11961591 T
1 T
11961592 GGAATTGGTT
Statistics
Matches: 131, Mismatches: 14, Indels: 17
0.81 0.09 0.10
Matches are distributed among these distances:
48 4 0.03
49 37 0.28
50 5 0.04
51 27 0.21
52 21 0.16
53 30 0.23
54 7 0.05
ACGTcount: A:0.38, C:0.07, G:0.06, T:0.49
Consensus pattern (50 bp):
TTTGAAAAATATTTAAATAGAAAATTGATATTTCAACTTTTCCTTTATTT
Found at i:11962317 original size:20 final size:20
Alignment explanation
Indices: 11962265--11962319 Score: 64
Period size: 20 Copynumber: 2.9 Consensus size: 20
11962255 TTAATTTGAC
11962265 AAATAAA-G-AAAAAA-AAT
1 AAATAAATGAAAAAAATAAT
*
11962282 AAATAAAT-ATACAAAATAAT
1 AAATAAATGA-AAAAAATAAT
11962302 AAATAAATGAAAAAAATA
1 AAATAAATGAAAAAAATA
11962320 CCCTGGCTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
17 7 0.23
19 5 0.16
20 18 0.58
21 1 0.03
ACGTcount: A:0.76, C:0.02, G:0.04, T:0.18
Consensus pattern (20 bp):
AAATAAATGAAAAAAATAAT
Found at i:11962871 original size:3 final size:3
Alignment explanation
Indices: 11962839--11962907 Score: 93
Period size: 3 Copynumber: 23.0 Consensus size: 3
11962829 TTTATATTTA
* * * * *
11962839 TAT TAA TAT TAA TAT TAA TAT AAA TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
11962887 TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT
11962908 CATCATCATC
Statistics
Matches: 56, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
3 56 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (3 bp):
TAT
Found at i:11963289 original size:22 final size:22
Alignment explanation
Indices: 11963248--11963289 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
11963238 ACCAACAGCA
** *
11963248 AATAAAAAAAATTTTTAGAAAC
1 AATAAAAAAAATCCTGAGAAAC
11963270 AATAAAAAAAATCCTGAGAA
1 AATAAAAAAAATCCTGAGAA
11963290 TAAAATTTTC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
22 17 1.00
ACGTcount: A:0.64, C:0.07, G:0.07, T:0.21
Consensus pattern (22 bp):
AATAAAAAAAATCCTGAGAAAC
Found at i:11963795 original size:19 final size:19
Alignment explanation
Indices: 11963767--11963807 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 19
11963757 GTTTCATAAG
* * *
11963767 TTTTTCTTTTTCTTTTTAT
1 TTTTTATTTTTATTTTGAT
11963786 TTTTTATTTTTATTTTGAT
1 TTTTTATTTTTATTTTGAT
11963805 TTT
1 TTT
11963808 ATTTATTTTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.10, C:0.05, G:0.02, T:0.83
Consensus pattern (19 bp):
TTTTTATTTTTATTTTGAT
Found at i:11963906 original size:9 final size:8
Alignment explanation
Indices: 11963891--11963961 Score: 61
Period size: 8 Copynumber: 8.2 Consensus size: 8
11963881 CAATTCTTTT
11963891 AAAAATAA
1 AAAAATAA
11963899 ATAAAATAAA
1 A-AAAAT-AA
11963909 AAAAATAA
1 AAAAATAA
11963917 AAAAACCTAA
1 AAAAA--TAA
*
11963927 AAAAATCA
1 AAAAATAA
11963935 AAAAATAA
1 AAAAATAA
* *
11963943 TAATAATAG
1 -AAAAATAA
*
11963952 GAAAATAA
1 AAAAATAA
11963960 AA
1 AA
11963962 TTTTATTACT
Statistics
Matches: 50, Mismatches: 8, Indels: 10
0.74 0.12 0.15
Matches are distributed among these distances:
8 23 0.46
9 16 0.32
10 11 0.22
ACGTcount: A:0.77, C:0.04, G:0.03, T:0.15
Consensus pattern (8 bp):
AAAAATAA
Found at i:11963914 original size:14 final size:15
Alignment explanation
Indices: 11963890--11963918 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
11963880 ACAATTCTTT
11963890 TAAAAATAAATAAAA
1 TAAAAATAAATAAAA
11963905 TAAAAA-AAATAAAA
1 TAAAAATAAATAAAA
11963919 AAACCTAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.83, C:0.00, G:0.00, T:0.17
Consensus pattern (15 bp):
TAAAAATAAATAAAA
Found at i:11963919 original size:10 final size:9
Alignment explanation
Indices: 11963891--11963945 Score: 58
Period size: 9 Copynumber: 5.9 Consensus size: 9
11963881 CAATTCTTTT
11963891 AAAAATAAA
1 AAAAATAAA
*
11963900 TAAAATAAA
1 AAAAATAAA
11963909 AAAAATAAA
1 AAAAATAAA
*
11963918 AAAACCT-AA
1 AAAA-ATAAA
11963927 AAAAATCAAA
1 AAAAAT-AAA
11963937 AAATAATAA
1 AAA-AATAA
11963946 TAATAGGAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
8 1 0.03
9 26 0.68
10 8 0.21
11 3 0.08
ACGTcount: A:0.80, C:0.05, G:0.00, T:0.15
Consensus pattern (9 bp):
AAAAATAAA
Found at i:11963921 original size:17 final size:17
Alignment explanation
Indices: 11963891--11963961 Score: 63
Period size: 18 Copynumber: 4.1 Consensus size: 17
11963881 CAATTCTTTT
11963891 AAAAATAAATAAAATAAA
1 AAAAATAAA-AAAATAAA
11963909 AAAAATAAAAAAACCT-AA
1 AAAAATAAAAAAA--TAAA
* *
11963927 AAAAATCAAAAAATAAT
1 AAAAATAAAAAAATAAA
* **
11963944 AATAATAGGAAAATAAA
1 AAAAATAAAAAAATAAA
11963961 A
1 A
11963962 TTTTATTACT
Statistics
Matches: 43, Mismatches: 7, Indels: 7
0.75 0.12 0.12
Matches are distributed among these distances:
16 1 0.02
17 18 0.42
18 23 0.53
19 1 0.02
ACGTcount: A:0.77, C:0.04, G:0.03, T:0.15
Consensus pattern (17 bp):
AAAAATAAAAAAATAAA
Found at i:11964065 original size:18 final size:18
Alignment explanation
Indices: 11964038--11964077 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
11964028 TTACTAAACA
*
11964038 ATAATTAAATAAAAAATG
1 ATAATAAAATAAAAAATG
11964056 ATAATAAAATAAAAAATG
1 ATAATAAAATAAAAAATG
11964074 ATAA
1 ATAA
11964078 AATTGTTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (18 bp):
ATAATAAAATAAAAAATG
Found at i:11964436 original size:25 final size:24
Alignment explanation
Indices: 11964408--11964468 Score: 61
Period size: 25 Copynumber: 2.5 Consensus size: 24
11964398 TTTTTATAAT
11964408 AAAAATAATTAAATAATAAAAAATA
1 AAAAATAATTAAATAAT-AAAAATA
* * *
11964433 AAAAAT-TTTAAAATAATCACAATA
1 AAAAATAATT-AAATAATAAAAATA
*
11964457 AAAACTAATTAA
1 AAAAATAATTAA
11964469 TTAAATCTCT
Statistics
Matches: 29, Mismatches: 5, Indels: 5
0.74 0.13 0.13
Matches are distributed among these distances:
24 14 0.48
25 15 0.52
ACGTcount: A:0.69, C:0.05, G:0.00, T:0.26
Consensus pattern (24 bp):
AAAAATAATTAAATAATAAAAATA
Found at i:11968928 original size:16 final size:18
Alignment explanation
Indices: 11968909--11968947 Score: 64
Period size: 16 Copynumber: 2.3 Consensus size: 18
11968899 CTATGCATAA
11968909 AAAAATACAAAA-AAA-T
1 AAAAATACAAAATAAACT
11968925 AAAAATACAAAATAAACT
1 AAAAATACAAAATAAACT
11968943 AAAAA
1 AAAAA
11968948 GATATTTAAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 12 0.57
17 3 0.14
18 6 0.29
ACGTcount: A:0.79, C:0.08, G:0.00, T:0.13
Consensus pattern (18 bp):
AAAAATACAAAATAAACT
Found at i:11969876 original size:40 final size:40
Alignment explanation
Indices: 11969806--11969939 Score: 189
Period size: 40 Copynumber: 3.4 Consensus size: 40
11969796 TCTCTCAACC
* * *
11969806 TTTTAACATATAAAGTTTGTTACCTTTGGTTAAAGAAGCA
1 TTTTAACATTTAAAGTTTGTTGCCTCTGGTTAAAGAAGCA
* * *
11969846 TTTCAAAATTTAAAGTTTGTTGCCTCTGGTTAGAAG-AGCC
1 TTTTAACATTTAAAGTTTGTTGCCTCTGGTTA-AAGAAGCA
*
11969886 TTTTAACATTTAAAGTTTGTTGCCTCTGGTTAAATAAGCA
1 TTTTAACATTTAAAGTTTGTTGCCTCTGGTTAAAGAAGCA
11969926 TTTTAACATTTAAA
1 TTTTAACATTTAAA
11969940 ATTTCATAGC
Statistics
Matches: 82, Mismatches: 10, Indels: 4
0.85 0.10 0.04
Matches are distributed among these distances:
39 2 0.02
40 77 0.94
41 3 0.04
ACGTcount: A:0.32, C:0.12, G:0.15, T:0.41
Consensus pattern (40 bp):
TTTTAACATTTAAAGTTTGTTGCCTCTGGTTAAAGAAGCA
Found at i:11969978 original size:80 final size:80
Alignment explanation
Indices: 11969804--11969972 Score: 212
Period size: 80 Copynumber: 2.1 Consensus size: 80
11969794 TGTCTCTCAA
* * * * *
11969804 CCTTTTAACATATAAAGTTTGTTACCTTTGGTTAAAGAAGCATTTCAAAATTTAAAGTTTGTTGC
1 CCTTTTAACATTTAAAGTTTGTTACCTCTGGTTAAAGAAGCATTTCAAAATTTAAAATTTATAGC
* *
11969869 CTCTGGTTAGAAGAG
66 CTATGGTCAGAAGAG
* * * *
11969884 CCTTTTAACATTTAAAGTTTGTTGCCTCTGGTTAAATAAGCATTTTAACATTTAAAATTTCATAG
1 CCTTTTAACATTTAAAGTTTGTTACCTCTGGTTAAAGAAGCATTTCAAAATTTAAAATTT-ATAG
*
11969949 CCTATGGTCAGAGGAG
65 CCTATGGTCAGAAGAG
*
11969965 CTTTTTAA
1 CCTTTTAA
11969973 TTTTAAGAGC
Statistics
Matches: 75, Mismatches: 13, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
80 53 0.71
81 22 0.29
ACGTcount: A:0.31, C:0.14, G:0.16, T:0.40
Consensus pattern (80 bp):
CCTTTTAACATTTAAAGTTTGTTACCTCTGGTTAAAGAAGCATTTCAAAATTTAAAATTTATAGC
CTATGGTCAGAAGAG
Found at i:11970102 original size:33 final size:33
Alignment explanation
Indices: 11970064--11970135 Score: 94
Period size: 33 Copynumber: 2.2 Consensus size: 33
11970054 CAAATTTTTA
*
11970064 ATTTAAAGTT-AGTTGCCTTTGGTTCA-AAGAGCC
1 ATTTAAAGTTCA-TTGCCTTT-GATCAGAAGAGCC
11970097 ATTTAAAGTTCATTGCCTTTGATCAGAAGAGCC
1 ATTTAAAGTTCATTGCCTTTGATCAGAAGAGCC
*
11970130 TTTTAA
1 ATTTAA
11970136 CATTTAAAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
32 4 0.11
33 30 0.86
34 1 0.03
ACGTcount: A:0.29, C:0.15, G:0.18, T:0.38
Consensus pattern (33 bp):
ATTTAAAGTTCATTGCCTTTGATCAGAAGAGCC
Found at i:11970198 original size:40 final size:40
Alignment explanation
Indices: 11970096--11970292 Score: 202
Period size: 40 Copynumber: 5.0 Consensus size: 40
11970086 TTCAAAGAGC
* *
11970096 CATTTAAAGTTCATTGCCTTTGATCAGAAGAGCCTTTTAA
1 CATTTAAAGTTTATTGCCTTTGGTCAGAAGAGCCTTTTAA
11970136 CATTTAAAGTTTATTGCCTTTGGTCAGAAGAGCCTTTTAA
1 CATTTAAAGTTTATTGCCTTTGGTCAGAAGAGCCTTTTAA
* * * *
11970176 CATTTAAAGTTTATTACCTTTGGTTA-AATGAGCATTTTGA
1 CATTTAAAGTTTATTGCCTTTGGTCAGAA-GAGCCTTTTAA
* ** * * *
11970216 -ATTTAGAGTTCGTTGCCTCTGGTGAGAAAAGCC-TTTAA
1 CATTTAAAGTTTATTGCCTTTGGTCAGAAGAGCCTTTTAA
* * * * *
11970254 TATTTAAAATTTCATTGCCTCTGGTCAAAAGAGCTTTTT
1 CATTTAAAGTTT-ATTGCCTTTGGTCAGAAGAGCCTTTT
11970293 TTTAAATTTT
Statistics
Matches: 129, Mismatches: 23, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
38 4 0.03
39 32 0.25
40 90 0.70
41 3 0.02
ACGTcount: A:0.28, C:0.15, G:0.17, T:0.40
Consensus pattern (40 bp):
CATTTAAAGTTTATTGCCTTTGGTCAGAAGAGCCTTTTAA
Found at i:11971714 original size:19 final size:21
Alignment explanation
Indices: 11971680--11971722 Score: 72
Period size: 19 Copynumber: 2.1 Consensus size: 21
11971670 GCTAAAAACT
11971680 AATAAAATAAATAAAATGATA
1 AATAAAATAAATAAAATGATA
11971701 AATAAAAT-AA-AAAATGATA
1 AATAAAATAAATAAAATGATA
11971720 AAT
1 AAT
11971723 TGTTTAAGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
19 12 0.55
20 2 0.09
21 8 0.36
ACGTcount: A:0.72, C:0.00, G:0.05, T:0.23
Consensus pattern (21 bp):
AATAAAATAAATAAAATGATA
Found at i:11972091 original size:30 final size:31
Alignment explanation
Indices: 11972034--11972097 Score: 94
Period size: 31 Copynumber: 2.1 Consensus size: 31
11972024 AATTTTTTAT
11972034 AATAAAAAAAATTAAAATAATAAATAATAAA
1 AATAAAAAAAATTAAAATAATAAATAATAAA
** *
11972065 AATAAAAAATTTTAAAATAAT-CATAATAAA
1 AATAAAAAAAATTAAAATAATAAATAATAAA
11972095 AAT
1 AAT
11972098 TAATTAATTA
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
30 11 0.37
31 19 0.63
ACGTcount: A:0.72, C:0.02, G:0.00, T:0.27
Consensus pattern (31 bp):
AATAAAAAAAATTAAAATAATAAATAATAAA
Found at i:11973669 original size:33 final size:34
Alignment explanation
Indices: 11973610--11973684 Score: 84
Period size: 33 Copynumber: 2.3 Consensus size: 34
11973600 TGGCATCTAG
*
11973610 GATTTAAG-CTCAGATTATCTGACACCCCATAAA
1 GATTTAAGCCTCAGATTATCTGACACCCAATAAA
* * * *
11973643 GATTTAAGCCT-AGTTTATTTGGCACCCAATGAA
1 GATTTAAGCCTCAGATTATCTGACACCCAATAAA
11973676 -ATTTAAGCC
1 GATTTAAGCC
11973685 CAATTAAGTT
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
32 9 0.25
33 25 0.69
34 2 0.06
ACGTcount: A:0.33, C:0.21, G:0.15, T:0.31
Consensus pattern (34 bp):
GATTTAAGCCTCAGATTATCTGACACCCAATAAA
Found at i:11973733 original size:34 final size:34
Alignment explanation
Indices: 11973694--11973999 Score: 170
Period size: 34 Copynumber: 9.5 Consensus size: 34
11973684 CCAATTAAGT
*
11973694 TTTAAGCCCAGTTTAGTTGACACCCAATGAAAGA
1 TTTAAGCCCAGTTTAGTTGGCACCCAATGAAAGA
* *
11973728 TTTAAGCTCAGTTTAGCTT-ACA-CCAAT-AAAGA
1 TTTAAGCCCAGTTTAG-TTGGCACCCAATGAAAGA
* ** *
11973760 TTTAAGCCCAATATTA-TCCAGCATCCAAT-AAA-A
1 TTTAAGCCCAGT-TTAGT-TGGCACCCAATGAAAGA
* *
11973793 TTTAAGCCTAGTTTA-TCTGGCACTC-ATGAAAAGA
1 TTTAAGCCCAGTTTAGT-TGGCACCCAATG-AAAGA
** * *
11973827 TTTAAGCCCAACTTAGCTGGCA-CCAATG-TA-A
1 TTTAAGCCCAGTTTAGTTGGCACCCAATGAAAGA
* * *
11973858 TTTAAGCCCAGTTTAGCTGGTACCC-----AAGT
1 TTTAAGCCCAGTTTAGTTGGCACCCAATGAAAGA
* * **
11973887 TTTAAGGCCAGAATTAACTGGCACCCAAT--AA-A
1 TTTAAGCCCAG-TTTAGTTGGCACCCAATGAAAGA
* * *
11973919 TTTAAACTCAGTTTAGTTGGCATCCAATGAAAGA
1 TTTAAGCCCAGTTTAGTTGGCACCCAATGAAAGA
* * *
11973953 TTTAAGCCTAGTTTA-TTTGCACCAAATG-AA-A
1 TTTAAGCCCAGTTTAGTTGGCACCCAATGAAAGA
11973984 TTTAAGCCCAGTTTAG
1 TTTAAGCCCAGTTTAG
11974000 CTGACACTTA
Statistics
Matches: 211, Mismatches: 41, Indels: 42
0.72 0.14 0.14
Matches are distributed among these distances:
28 1 0.00
29 10 0.05
30 11 0.05
31 51 0.24
32 37 0.18
33 39 0.18
34 60 0.28
35 2 0.01
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (34 bp):
TTTAAGCCCAGTTTAGTTGGCACCCAATGAAAGA
Found at i:11973763 original size:83 final size:82
Alignment explanation
Indices: 11973612--11973771 Score: 193
Period size: 83 Copynumber: 1.9 Consensus size: 82
11973602 GCATCTAGGA
* * * * *
11973612 TTTAAGCTCAGATTATCTGACACCCCATAAAGATTTAAGCCTAGTTTATTTGGCACCCAATGAAA
1 TTTAAGCCCAGATTATCTGACACCCAATAAAGATTTAAGCCTAGTTTACTTGACACCCAATAAAA
11973677 TTTAAGCCCAATTAAGT
66 TTTAAGCCCAATTAAGT
*
11973694 TTTAAGCCCAGTTTAGT-TGACACCCAATGAAAGATTTAAG-CTCAGTTTAGCTT-ACA-CCAAT
1 TTTAAGCCCAGATTA-TCTGACACCCAAT-AAAGATTTAAGCCT-AGTTTA-CTTGACACCCAAT
11973755 AAAGATTTAAGCCCAAT
62 AAA-ATTTAAGCCCAAT
11973772 ATTATCCAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 9
0.82 0.07 0.11
Matches are distributed among these distances:
82 32 0.48
83 33 0.49
84 2 0.03
ACGTcount: A:0.35, C:0.21, G:0.14, T:0.31
Consensus pattern (82 bp):
TTTAAGCCCAGATTATCTGACACCCAATAAAGATTTAAGCCTAGTTTACTTGACACCCAATAAAA
TTTAAGCCCAATTAAGT
Found at i:11974287 original size:16 final size:17
Alignment explanation
Indices: 11974251--11974300 Score: 57
Period size: 16 Copynumber: 2.9 Consensus size: 17
11974241 CTTAATAACT
*
11974251 AAAGCTTACTAAATATAG
1 AAAG-TTACTAAAAATAG
*
11974269 AAA-TTACTAAAAATGG
1 AAAGTTACTAAAAATAG
*
11974285 AAAGTTGCTAAAAATA
1 AAAGTTACTAAAAATA
11974301 AAAAATTAAA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
16 14 0.52
17 10 0.37
18 3 0.11
ACGTcount: A:0.54, C:0.08, G:0.12, T:0.26
Consensus pattern (17 bp):
AAAGTTACTAAAAATAG
Found at i:11976621 original size:32 final size:33
Alignment explanation
Indices: 11976540--11976635 Score: 83
Period size: 33 Copynumber: 2.9 Consensus size: 33
11976530 TCAAGAAAAG
* *
11976540 ATTTAAGCCCAATTTA-ACTGACATCTAAT-AAAGT
1 ATTTAAGCCCAATTTAGA-TGGCA-CCAATGAAA-T
*
11976574 -TTTAAGCCCAATTTAGATGGC-CTAATGAAAT
1 ATTTAAGCCCAATTTAGATGGCACCAATGAAAT
* * *
11976605 ATTTAAGTCCAGTTTAGTTGGCACCAATGAA
1 ATTTAAGCCCAATTTAGATGGCACCAATGAA
11976636 GATTTGAACC
Statistics
Matches: 53, Mismatches: 5, Indels: 9
0.79 0.07 0.13
Matches are distributed among these distances:
31 6 0.11
32 21 0.40
33 25 0.47
34 1 0.02
ACGTcount: A:0.36, C:0.17, G:0.15, T:0.32
Consensus pattern (33 bp):
ATTTAAGCCCAATTTAGATGGCACCAATGAAAT
Found at i:11976864 original size:23 final size:23
Alignment explanation
Indices: 11976829--11976893 Score: 71
Period size: 23 Copynumber: 2.9 Consensus size: 23
11976819 CCTAGGTTTT
* *
11976829 AAGCCCAGT-ATTAGCTGGCACGA
1 AAGCCCA-TAATTAGCTAGCACAA
* *
11976852 AAGCCTATAATTAGTTAGCACAA
1 AAGCCCATAATTAGCTAGCACAA
11976875 AAGCCCATAA-TAGCTAGCA
1 AAGCCCATAATTAGCTAGCA
11976894 TGTAGGCTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 3
0.80 0.14 0.07
Matches are distributed among these distances:
22 9 0.26
23 26 0.74
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.20
Consensus pattern (23 bp):
AAGCCCATAATTAGCTAGCACAA
Found at i:11977437 original size:37 final size:37
Alignment explanation
Indices: 11977379--11977454 Score: 93
Period size: 37 Copynumber: 2.1 Consensus size: 37
11977369 GCCATTATGC
11977379 AAAAAAATAAAATTAAAATTAAA-AAAGGAATAAAATT
1 AAAAAAATAAAATTAAAATTAAATAAA-GAATAAAATT
* * *
11977416 AAAAATATAATAA-TAATATTAAATAAATAATAAAATT
1 AAAAAAATAA-AATTAAAATTAAATAAAGAATAAAATT
11977453 AA
1 AA
11977455 TTAAAATTTT
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
37 29 0.85
38 5 0.15
ACGTcount: A:0.71, C:0.00, G:0.03, T:0.26
Consensus pattern (37 bp):
AAAAAAATAAAATTAAAATTAAATAAAGAATAAAATT
Found at i:11977459 original size:17 final size:17
Alignment explanation
Indices: 11977383--11977459 Score: 68
Period size: 17 Copynumber: 4.4 Consensus size: 17
11977373 TTATGCAAAA
*
11977383 AAATAAA-ATTAAAATT
1 AAATAAATAATAAAATT
*
11977399 AAA-AAAGGAATAAAATT
1 AAATAAA-TAATAAAATT
*
11977416 AAAAATATAATAATAATATT
1 --AAATA-AATAATAAAATT
11977436 AAATAAATAATAAAATT
1 AAATAAATAATAAAATT
*
11977453 AATTAAA
1 AAATAAA
11977460 ATTTTAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 11
0.76 0.08 0.17
Matches are distributed among these distances:
15 3 0.06
16 3 0.06
17 25 0.50
18 5 0.10
19 3 0.06
20 9 0.18
21 2 0.04
ACGTcount: A:0.69, C:0.00, G:0.03, T:0.29
Consensus pattern (17 bp):
AAATAAATAATAAAATT
Found at i:11979471 original size:13 final size:13
Alignment explanation
Indices: 11979428--11979478 Score: 57
Period size: 13 Copynumber: 3.9 Consensus size: 13
11979418 CATAAATCCT
11979428 TAAAACCCTAAAA
1 TAAAACCCTAAAA
* *
11979441 TGAAACCTTAAAA
1 TAAAACCCTAAAA
* *
11979454 CAAAACCCTAAAG
1 TAAAACCCTAAAA
*
11979467 TAAAATCCTAAA
1 TAAAACCCTAAA
11979479 TCTTAAGTAA
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
13 30 1.00
ACGTcount: A:0.57, C:0.22, G:0.04, T:0.18
Consensus pattern (13 bp):
TAAAACCCTAAAA
Found at i:11999766 original size:22 final size:24
Alignment explanation
Indices: 11999741--11999788 Score: 82
Period size: 24 Copynumber: 2.1 Consensus size: 24
11999731 CGCTTGGGTT
11999741 GAAATTAG-TT-TCTCTTTTGGCC
1 GAAATTAGTTTCTCTCTTTTGGCC
11999763 GAAATTAGTTTCTCTCTTTTGGCC
1 GAAATTAGTTTCTCTCTTTTGGCC
11999787 GA
1 GA
11999789 TGCTCATAGT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 8 0.33
23 2 0.08
24 14 0.58
ACGTcount: A:0.19, C:0.19, G:0.19, T:0.44
Consensus pattern (24 bp):
GAAATTAGTTTCTCTCTTTTGGCC
Found at i:12002998 original size:2 final size:2
Alignment explanation
Indices: 12002991--12003019 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
12002981 GTCAAACATA
12002991 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12003020 GTGTTGGGTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:12009233 original size:3 final size:3
Alignment explanation
Indices: 12009225--12009283 Score: 109
Period size: 3 Copynumber: 19.7 Consensus size: 3
12009215 ATGATATAAG
12009225 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT
*
12009273 ATT GTT ATT AT
1 ATT ATT ATT AT
12009284 CCTATCCTAT
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
3 54 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
ATT
Found at i:12009778 original size:15 final size:15
Alignment explanation
Indices: 12009758--12009801 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
12009748 TGTAGTGGTT
12009758 TTTTATTTTTAATAA
1 TTTTATTTTTAATAA
* * *
12009773 TTTTATGTTTATTTA
1 TTTTATTTTTAATAA
12009788 TTTTATTTTTAATA
1 TTTTATTTTTAATA
12009802 TTTAAATATT
Statistics
Matches: 23, Mismatches: 6, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.70
Consensus pattern (15 bp):
TTTTATTTTTAATAA
Found at i:12012439 original size:21 final size:21
Alignment explanation
Indices: 12012413--12012460 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
12012403 CTAAAAATTG
*
12012413 TCAATGTTGAAATGGAGCTTA
1 TCAATGTTGAAATGAAGCTTA
12012434 TCAATGTTGAAATGAAGCTTA
1 TCAATGTTGAAATGAAGCTTA
*
12012455 CCAATG
1 TCAATG
12012461 GAGAAAAACA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.21, T:0.31
Consensus pattern (21 bp):
TCAATGTTGAAATGAAGCTTA
Found at i:12012466 original size:21 final size:21
Alignment explanation
Indices: 12012421--12012466 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
12012411 TGTCAATGTT
* * **
12012421 GAAATGGAGCTTATCAATGTT
1 GAAATGAAGCTTACCAATGGA
12012442 GAAATGAAGCTTACCAATGGA
1 GAAATGAAGCTTACCAATGGA
12012463 GAAA
1 GAAA
12012467 AACACCTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.41, C:0.11, G:0.24, T:0.24
Consensus pattern (21 bp):
GAAATGAAGCTTACCAATGGA
Found at i:12017427 original size:17 final size:17
Alignment explanation
Indices: 12017405--12017438 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
12017395 TTCTTTAGCA
*
12017405 TATCCTATGTATCCATT
1 TATCCTATGCATCCATT
12017422 TATCCTATGCATCCATT
1 TATCCTATGCATCCATT
12017439 CTTTCTGGTG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.24, C:0.26, G:0.06, T:0.44
Consensus pattern (17 bp):
TATCCTATGCATCCATT
Found at i:12021101 original size:20 final size:22
Alignment explanation
Indices: 12021055--12021101 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 22
12021045 TTCCAATGCA
12021055 TCAAGAATCATCCAAGATTGAT
1 TCAAGAATCATCCAAGATTGAT
* *
12021077 T-AAGAATTAT-CAAGATT-CT
1 TCAAGAATCATCCAAGATTGAT
12021096 TCAAGA
1 TCAAGA
12021102 TTCAAGAAGA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 2 0.09
20 11 0.50
21 8 0.36
22 1 0.05
ACGTcount: A:0.43, C:0.15, G:0.13, T:0.30
Consensus pattern (22 bp):
TCAAGAATCATCCAAGATTGAT
Found at i:12021972 original size:21 final size:21
Alignment explanation
Indices: 12021933--12021972 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
12021923 ACAATGGAAA
**
12021933 TAGAAAAACTTTTTTTTTATT
1 TAGAAAAACTTTTAATTTATT
*
12021954 TAGATAAACTTTTAATTTA
1 TAGAAAAACTTTTAATTTA
12021973 AAGAAAAGGA
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.53
Consensus pattern (21 bp):
TAGAAAAACTTTTAATTTATT
Found at i:12022759 original size:2 final size:2
Alignment explanation
Indices: 12022754--12022790 Score: 56
Period size: 2 Copynumber: 18.5 Consensus size: 2
12022744 TTATATAAAA
* *
12022754 AT AT AT AT CT AT AT AT CT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12022791 AATAAAGAGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.46, C:0.05, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:12022999 original size:22 final size:23
Alignment explanation
Indices: 12022953--12022999 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
12022943 TAGCAAGTTT
*
12022953 ATCTATATTTTTAAAAATTAAAA
1 ATCTATATTTTGAAAAATTAAAA
* *
12022976 ATCTATA-TTTGAAACATTATAA
1 ATCTATATTTTGAAAAATTAAAA
12022998 AT
1 AT
12023000 ATATCCTAAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 14 0.67
23 7 0.33
ACGTcount: A:0.49, C:0.06, G:0.02, T:0.43
Consensus pattern (23 bp):
ATCTATATTTTGAAAAATTAAAA
Found at i:12027179 original size:40 final size:40
Alignment explanation
Indices: 12027135--12027214 Score: 142
Period size: 40 Copynumber: 2.0 Consensus size: 40
12027125 ATTCATAAAG
*
12027135 TAAGAGTTAAAATATTCATCATTGGAGAAAATGTGTTACA
1 TAAGAGTCAAAATATTCATCATTGGAGAAAATGTGTTACA
*
12027175 TAAGAGTCAAAGTATTCATCATTGGAGAAAATGTGTTACA
1 TAAGAGTCAAAATATTCATCATTGGAGAAAATGTGTTACA
12027215 CTTTAGCTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.41, C:0.09, G:0.19, T:0.31
Consensus pattern (40 bp):
TAAGAGTCAAAATATTCATCATTGGAGAAAATGTGTTACA
Found at i:12028916 original size:39 final size:39
Alignment explanation
Indices: 12028870--12028947 Score: 113
Period size: 39 Copynumber: 2.0 Consensus size: 39
12028860 CTAGTAGAAG
* *
12028870 TAGAAATCCTATCTTTAAGAG-CTTTAAGAGAAGTAGGAT
1 TAGAAATCCCATCTTTAAGAGTC-ATAAGAGAAGTAGGAT
*
12028909 TAGAAATCCCATTTTTAAGAGTCATAAGAGAAGTAGGAT
1 TAGAAATCCCATCTTTAAGAGTCATAAGAGAAGTAGGAT
12028948 AAAAAAAAGC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 34 0.97
40 1 0.03
ACGTcount: A:0.40, C:0.10, G:0.21, T:0.29
Consensus pattern (39 bp):
TAGAAATCCCATCTTTAAGAGTCATAAGAGAAGTAGGAT
Found at i:12030341 original size:66 final size:66
Alignment explanation
Indices: 12030236--12030359 Score: 164
Period size: 66 Copynumber: 1.9 Consensus size: 66
12030226 ATCTTAACTC
*
12030236 GATCCAAATCATTTTAGCTTTGTGACCTGCAGTTCAATCTC-GATCACTCATTTTCAATTTCGGC
1 GATCCAAATCATTTTAGCTTTGTGACCTACAGTTCAATCTCAG-TCACTCATTTTCAATTTCGGC
12030300 TT
65 TT
* * *
12030302 GATCTAAATCATTTTAGCTTT-TCGACTTAC-GATTTAATCTCAGTCACTCATTTTCAAT
1 GATCCAAATCATTTTAGCTTTGT-GACCTACAG-TTCAATCTCAGTCACTCATTTTCAAT
12030360 CTCCACTATG
Statistics
Matches: 51, Mismatches: 4, Indels: 6
0.84 0.07 0.10
Matches are distributed among these distances:
65 2 0.04
66 48 0.94
67 1 0.02
ACGTcount: A:0.25, C:0.23, G:0.11, T:0.41
Consensus pattern (66 bp):
GATCCAAATCATTTTAGCTTTGTGACCTACAGTTCAATCTCAGTCACTCATTTTCAATTTCGGCT
T
Found at i:12031759 original size:18 final size:17
Alignment explanation
Indices: 12031738--12031771 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
12031728 TTCTTTTTCT
12031738 TTTTTAATTTATTTTTTG
1 TTTTT-ATTTATTTTTTG
*
12031756 TTTTTATTTGTTTTTT
1 TTTTTATTTATTTTTT
12031772 TTAGATTTTT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.12, C:0.00, G:0.06, T:0.82
Consensus pattern (17 bp):
TTTTTATTTATTTTTTG
Found at i:12031799 original size:3 final size:3
Alignment explanation
Indices: 12031781--12031824 Score: 70
Period size: 3 Copynumber: 14.3 Consensus size: 3
12031771 TTTAGATTTT
*
12031781 TTA TATA TTG TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA T-TA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
12031825 CATTTGATTC
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:12033148 original size:15 final size:16
Alignment explanation
Indices: 12033128--12033161 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
12033118 TTAGTTTAAA
*
12033128 AATATAAAA-ATTTAT
1 AATATAAAATAATTAT
12033143 AATATAAAATAATTAT
1 AATATAAAATAATTAT
12033159 AAT
1 AAT
12033162 TTTAAGATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 9 0.53
16 8 0.47
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (16 bp):
AATATAAAATAATTAT
Found at i:12033604 original size:3 final size:3
Alignment explanation
Indices: 12033596--12033621 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
12033586 CAATTTTTTA
12033596 ATT ATT ATT ATT ATT ATT ATT ATT AT
1 ATT ATT ATT ATT ATT ATT ATT ATT AT
12033622 ATTTTTTTCA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:12033640 original size:14 final size:13
Alignment explanation
Indices: 12033623--12033660 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 13
12033613 TATTATTATA
12033623 TTTTTTTCATTTTC
1 TTTTTTTC-TTTTC
12033637 TTTTTTT-TTTTC
1 TTTTTTTCTTTTC
12033649 TCTTTTTTCTTT
1 T-TTTTTTCTTT
12033661 CTTCTTTCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
12 6 0.27
13 6 0.27
14 10 0.45
ACGTcount: A:0.03, C:0.13, G:0.00, T:0.84
Consensus pattern (13 bp):
TTTTTTTCTTTTC
Found at i:12033642 original size:7 final size:7
Alignment explanation
Indices: 12033632--12033685 Score: 56
Period size: 7 Copynumber: 7.4 Consensus size: 7
12033622 ATTTTTTTCA
12033632 TTTTCTT
1 TTTTCTT
12033639 TTTT-TT
1 TTTTCTT
12033645 TTTCTCTT
1 TTT-TCTT
12033653 TTTTCTT
1 TTTTCTT
*
12033660 TCTTCTT
1 TTTTCTT
12033667 TCTTTCCTT
1 T-TTT-CTT
*
12033676 ATTTCTT
1 TTTTCTT
12033683 TTT
1 TTT
12033686 CCTTCTTCTT
Statistics
Matches: 39, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
6 5 0.13
7 21 0.54
8 10 0.26
9 3 0.08
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.80
Consensus pattern (7 bp):
TTTTCTT
Found at i:12035023 original size:19 final size:17
Alignment explanation
Indices: 12034999--12035033 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
12034989 TAACAATAAA
12034999 TAAAAATTAATAAATATAT
1 TAAAAA-TAAT-AATATAT
12035018 TAAAAATAATAATATA
1 TAAAAATAATAATATA
12035034 AATAAGAAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.38
18 4 0.25
19 6 0.38
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (17 bp):
TAAAAATAATAATATAT
Found at i:12035494 original size:14 final size:15
Alignment explanation
Indices: 12035468--12035496 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
12035458 GAATAACATT
12035468 TAAATATAAAAATAA
1 TAAATATAAAAATAA
12035483 TAAATA-AAAAATAA
1 TAAATATAAAAATAA
12035497 AAAAATCAAG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (15 bp):
TAAATATAAAAATAA
Found at i:12035510 original size:19 final size:20
Alignment explanation
Indices: 12035473--12035510 Score: 51
Period size: 19 Copynumber: 1.9 Consensus size: 20
12035463 ACATTTAAAT
*
12035473 ATAAAAATAATAAATAAAAA
1 ATAAAAATAATAAAGAAAAA
*
12035493 ATAAAAA-AATCAAGAAAA
1 ATAAAAATAATAAAGAAAA
12035511 TTATTTTTCA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
19 9 0.56
20 7 0.44
ACGTcount: A:0.79, C:0.03, G:0.03, T:0.16
Consensus pattern (20 bp):
ATAAAAATAATAAAGAAAAA
Found at i:12040510 original size:20 final size:21
Alignment explanation
Indices: 12040471--12040511 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 21
12040461 CAAATCAAAT
* *
12040471 TGGTCAAAAGATCTACTCAAC
1 TGGTCAAAAGATCCAATCAAC
12040492 TGGTC-AAAGATCCAATCAAC
1 TGGTCAAAAGATCCAATCAAC
12040512 ACAAATCATT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.39, C:0.24, G:0.15, T:0.22
Consensus pattern (21 bp):
TGGTCAAAAGATCCAATCAAC
Found at i:12043894 original size:1 final size:1
Alignment explanation
Indices: 12043888--12043915 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
12043878 CGCTACACAA
12043888 GGGGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGGGG
12043916 CTGAACTGAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:12044210 original size:17 final size:17
Alignment explanation
Indices: 12044188--12044221 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
12044178 AAACTCCCTT
12044188 CATTTATATGCAAGATC
1 CATTTATATGCAAGATC
12044205 CATTTATATGCAAGATC
1 CATTTATATGCAAGATC
12044222 GTTACTCCGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (17 bp):
CATTTATATGCAAGATC
Found at i:12051080 original size:19 final size:20
Alignment explanation
Indices: 12051040--12051078 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
12051030 ATTCACAAAA
12051040 ATTTTTATTTATTAAAATTT
1 ATTTTTATTTATTAAAATTT
12051060 ATTTTATATTT-TTAAAATT
1 ATTTT-TATTTATTAAAATT
12051079 ATGTCACATG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 13 0.72
21 5 0.28
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (20 bp):
ATTTTTATTTATTAAAATTT
Found at i:12057580 original size:7 final size:7
Alignment explanation
Indices: 12057568--12057611 Score: 56
Period size: 7 Copynumber: 6.6 Consensus size: 7
12057558 AGTAGGCCCA
12057568 TTTTATT
1 TTTTATT
12057575 TTTTATT
1 TTTTATT
*
12057582 TTGTA-T
1 TTTTATT
12057588 TTTTA-T
1 TTTTATT
12057594 TTTTATT
1 TTTTATT
*
12057601 TTATATT
1 TTTTATT
12057608 TTTT
1 TTTT
12057612 TCTTTTTTCT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
6 11 0.34
7 21 0.66
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.82
Consensus pattern (7 bp):
TTTTATT
Found at i:12057592 original size:13 final size:12
Alignment explanation
Indices: 12057568--12057610 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 12
12057558 AGTAGGCCCA
12057568 TTTTATTTTTTAT
1 TTTTA-TTTTTAT
12057581 TTTGTATTTTTAT
1 TTT-TATTTTTAT
12057594 TTTTATTTTATAT
1 TTTTATTTT-TAT
12057607 TTTT
1 TTTT
12057611 TTCTTTTTTC
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
12 6 0.21
13 20 0.71
14 2 0.07
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.81
Consensus pattern (12 bp):
TTTTATTTTTAT
Found at i:12057596 original size:19 final size:20
Alignment explanation
Indices: 12057568--12057610 Score: 70
Period size: 19 Copynumber: 2.2 Consensus size: 20
12057558 AGTAGGCCCA
*
12057568 TTTTATTTTTTATTTTGTAT
1 TTTTATTTTTTATTTTATAT
12057588 TTTTA-TTTTTATTTTATAT
1 TTTTATTTTTTATTTTATAT
12057607 TTTT
1 TTTT
12057611 TTCTTTTTTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 17 0.77
20 5 0.23
ACGTcount: A:0.16, C:0.00, G:0.02, T:0.81
Consensus pattern (20 bp):
TTTTATTTTTTATTTTATAT
Found at i:12057647 original size:4 final size:4
Alignment explanation
Indices: 12057629--12057799 Score: 80
Period size: 4 Copynumber: 44.5 Consensus size: 4
12057619 TCTTTGTATC
* *
12057629 TTAT GTAT TTA- TTAT TTAT TCAT TTA- TTAT TACTAT TTAT TATAT TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT T--TAT TTAT T-TAT TTAT
* * * *
12057678 TTAT TT-T ATTA- TTAT TTAT CTA- TTAGT ATAT GTAT GTAT TTA- TTA-
1 TTAT TTAT -TTAT TTAT TTAT TTAT TTA-T TTAT TTAT TTAT TTAT TTAT
* * *
12057723 TTAT TTAT CTAT TTAT ATA- TTA- TTAT TTAT CTA- TTA- TTA- TTAT
1 TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT TTAT
* * * *
12057766 TTAT CTAT TAAT ATT-T TTAT TTAT CTAA TTAT TT
1 TTAT TTAT TTAT -TTAT TTAT TTAT TTAT TTAT TT
12057800 TCTTTTAATT
Statistics
Matches: 129, Mismatches: 23, Indels: 30
0.71 0.13 0.16
Matches are distributed among these distances:
3 33 0.26
4 85 0.66
5 7 0.05
6 4 0.03
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.64
Consensus pattern (4 bp):
TTAT
Found at i:12057653 original size:8 final size:7
Alignment explanation
Indices: 12057629--12057789 Score: 97
Period size: 7 Copynumber: 22.6 Consensus size: 7
12057619 TCTTTGTATC
12057629 TTATGTAT
1 TTAT-TAT
12057637 TTATTAT
1 TTATTAT
12057644 TTATTCAT
1 TTATT-AT
12057652 TTATTA-
1 TTATTAT
*
12057658 TTACTAT
1 TTATTAT
12057665 TTATTAT
1 TTATTAT
*
12057672 AT-TTAT
1 TTATTAT
12057678 TTA-T-T
1 TTATTAT
12057683 TTATTA-
1 TTATTAT
12057689 TTATTTAT
1 TTA-TTAT
*
12057697 CTATTAGT
1 TTATTA-T
*
12057705 ATATGTAT
1 TTAT-TAT
*
12057713 GTATT-T
1 TTATTAT
12057719 ATTATTAT
1 -TTATTAT
12057727 TTATCTAT
1 TTAT-TAT
12057735 TTA-TAT
1 TTATTAT
12057741 ATTATTAT
1 -TTATTAT
12057749 TTATCTATT
1 TTAT-TA-T
12057758 ATTATTAT
1 -TTATTAT
12057766 TTATCTA-
1 TTAT-TAT
*
12057773 TTAATAT
1 TTATTAT
12057780 TT-TTAT
1 TTATTAT
12057786 TTAT
1 TTAT
12057790 CTAATTATTT
Statistics
Matches: 123, Mismatches: 10, Indels: 41
0.71 0.06 0.24
Matches are distributed among these distances:
5 4 0.03
6 26 0.21
7 48 0.39
8 36 0.29
9 5 0.04
10 4 0.03
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (7 bp):
TTATTAT
Found at i:12057658 original size:3 final size:3
Alignment explanation
Indices: 12057637--12057786 Score: 72
Period size: 3 Copynumber: 44.7 Consensus size: 3
12057627 TCTTATGTAT
*
12057637 TTA TTA TTTA TTCA TTTA TTA TTA CTA TTTA TTA -TA TTTA TTTA TT-
1 TTA TTA -TTA TT-A -TTA TTA TTA TTA -TTA TTA TTA -TTA -TTA TTA
*
12057683 TTA TTA TTA TTTA TCTA TTA GTA -TA TGTA TGTA TTTA TTA TTA TTTA
1 TTA TTA TTA -TTA T-TA TTA TTA TTA T-TA T-TA -TTA TTA TTA -TTA
*
12057730 TCTA TTTA TATA TTA TTA TTTA TCTA TTA TTA TTA TTTA TCTA TTA ATA
1 T-TA -TTA T-TA TTA TTA -TTA T-TA TTA TTA TTA -TTA T-TA TTA TTA
*
12057779 TTT TTA TT
1 TTA TTA TT
12057787 TATCTAATTA
Statistics
Matches: 120, Mismatches: 7, Indels: 40
0.72 0.04 0.24
Matches are distributed among these distances:
2 6 0.05
3 61 0.51
4 49 0.41
5 4 0.03
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (3 bp):
TTA
Found at i:12057670 original size:10 final size:10
Alignment explanation
Indices: 12057637--12057786 Score: 114
Period size: 10 Copynumber: 14.5 Consensus size: 10
12057627 TCTTATGTAT
12057637 TTATTATTTA
1 TTATTATTTA
12057647 TTCATT-TATTA
1 TT-ATTAT-TTA
*
12057658 TTACTATTTA
1 TTATTATTTA
12057668 TTA-TATTTA
1 TTATTATTTA
12057677 -T-TTATTTTA
1 TTATTA-TTTA
12057686 TTATTATTTA
1 TTATTATTTA
*
12057696 TCTATTAGTATA
1 T-TATTA-TTTA
12057708 TGTATGTATTTA
1 T-TAT-TATTTA
12057720 TTATTATTTA
1 TTATTATTTA
*
12057730 TCTATTTATATA
1 T-TA-TTATTTA
12057742 TTATTATTTA
1 TTATTATTTA
12057752 TCTATTA-TTA
1 T-TATTATTTA
*
12057762 TTATTTATCTA
1 TTA-TTATTTA
*
12057773 TTAATATTT-
1 TTATTATTTA
12057782 TTATT
1 TTATT
12057787 TATCTAATTA
Statistics
Matches: 115, Mismatches: 10, Indels: 31
0.74 0.06 0.20
Matches are distributed among these distances:
8 3 0.03
9 16 0.14
10 42 0.37
11 34 0.30
12 18 0.16
13 2 0.02
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.65
Consensus pattern (10 bp):
TTATTATTTA
Found at i:12057695 original size:49 final size:49
Alignment explanation
Indices: 12057637--12057775 Score: 133
Period size: 49 Copynumber: 2.8 Consensus size: 49
12057627 TCTTATGTAT
*
12057637 TTATTATTTATTCATTTATTATTACTATTTATTA-TATTTATTTATTTTA
1 TTATTATTTATTCATTTATTATTACTATTTATTATTATTTATCTA-TTTA
*
12057686 TTATTATTTA-TC-TATTAGTATATGTATGTATTTATTATTATTTATCTATTTA
1 TTATTATTTATTCAT-TTA-T-TAT-TA-CTATTTATTATTATTTATCTATTTA
* * *
12057738 TATATTA-TTATTTATCTATTATTATTATTTATCTATTA
1 T-TATTATTTATTCATTTATTATTACTATTTAT-TATTA
12057776 ATATTTTTAT
Statistics
Matches: 75, Mismatches: 5, Indels: 19
0.76 0.05 0.19
Matches are distributed among these distances:
47 1 0.01
48 5 0.07
49 18 0.24
50 10 0.13
51 5 0.07
52 18 0.24
53 17 0.23
54 1 0.01
ACGTcount: A:0.29, C:0.04, G:0.02, T:0.64
Consensus pattern (49 bp):
TTATTATTTATTCATTTATTATTACTATTTATTATTATTTATCTATTTA
Found at i:12057718 original size:39 final size:36
Alignment explanation
Indices: 12057637--12057798 Score: 144
Period size: 34 Copynumber: 4.6 Consensus size: 36
12057627 TCTTATGTAT
*
12057637 TTATTATTTA-TTCATTTATTA-TTA-CTATT-TAT-
1 TTATTATTTATTTTA-TTATTATTTATCTATTATATA
12057669 TATATTTATTTATTTTATTATTATTTATCTATTAGTATA
1 T-TA-TTATTTATTTTATTATTATTTATCTATTA-TATA
* *
12057708 -T-GTATGTA-TTTATTATTATTTATCTATTTATATA
1 TTATTATTTATTTTATTATTATTTATCTA-TTATATA
12057742 TTATTATTTATCTATTATTATTATTTATCTATTA-ATA
1 TTATTATTTAT-T-TTATTATTATTTATCTATTATATA
* * *
12057779 TTTTTATTTATCTAATTATT
1 TTATTATTTATTTTATTATT
12057799 TTCTTTTAAT
Statistics
Matches: 108, Mismatches: 8, Indels: 25
0.77 0.06 0.18
Matches are distributed among these distances:
32 1 0.01
33 2 0.02
34 35 0.32
35 22 0.20
36 10 0.09
37 14 0.13
38 7 0.06
39 17 0.16
ACGTcount: A:0.30, C:0.04, G:0.02, T:0.64
Consensus pattern (36 bp):
TTATTATTTATTTTATTATTATTTATCTATTATATA
Found at i:12057799 original size:49 final size:48
Alignment explanation
Indices: 12057634--12057816 Score: 137
Period size: 53 Copynumber: 3.7 Consensus size: 48
12057624 GTATCTTATG
* * *
12057634 TATTTATTATTTATTCATTTATTATTA-CTATTTATTA-T-AT-TTATT
1 TATTTATTAATTATTTATCTATTATTATCTATTTATTATTAATATT-TT
* * *
12057679 TATTTTATT-ATTATTTATCTATTAGTATATGTATGTATTTATTATTATTTAT
1 TA-TTTATTAATTATTTATCTATTA-T-TATCTATTTA-TTATTAATATTT-T
12057731 CTATTTATATATTATTATTTATCTATTATTAT-TATTTATCTATTAATATTTT
1 -TATTTAT-TA--ATTATTTATCTATTATTATCTATTTAT-TATTAATATTTT
*
12057783 TATTTATCTAATTATTT-TCTTTTAATTATCTATT
1 TATTTAT-TAATTATTTATCTATT-ATTATCTATT
12057817 ACCATTTTTT
Statistics
Matches: 111, Mismatches: 10, Indels: 29
0.74 0.07 0.19
Matches are distributed among these distances:
45 14 0.13
46 7 0.06
47 2 0.02
48 10 0.09
49 15 0.14
50 5 0.05
51 11 0.10
52 10 0.09
53 18 0.16
54 3 0.03
55 1 0.01
56 15 0.14
ACGTcount: A:0.29, C:0.05, G:0.02, T:0.64
Consensus pattern (48 bp):
TATTTATTAATTATTTATCTATTATTATCTATTTATTATTAATATTTT
Found at i:12057812 original size:59 final size:56
Alignment explanation
Indices: 12057573--12057817 Score: 161
Period size: 59 Copynumber: 4.3 Consensus size: 56
12057563 GCCCATTTTA
* * *
12057573 TTTTTTATTT-TGTATTTTTATT-TTTATT-TTATATTTTT-TTCT-T-T-TTTCTT
1 TTTTTTATTTATCTATTATTATTATTTATTATTATATTTTTATT-TATCTATTTATT
* * * *
12057623 TGTATCTTATGTATTTATTATTTATTCATTTATTATTACTA--TTTATTATATTTATTTATT
1 T-T-TTTTATTTATCTATTA-TTATT-ATTTATTATTA-TATTTTTATT-TATCTATTTATT
* * *
12057683 TTATTATTATTTATCTATTAGTA-TATGTATGTATT-TATTATTATTTATCTATTTATAT
1 TT-TT-TTATTTATCTATTATTATTATTTAT-TATTATATTTTTATTTATCTATTTAT-T
* * *
12057741 ATTATTATTTATCTATTATTATTATTTATCTATTAATATTTTTATTTATCTAATTATT
1 TTTTTTATTTATCTATTATTATTATTTAT-TATT-ATATTTTTATTTATCTATTTATT
*
12057799 TTCTTTTAATTATCTATTA
1 TT-TTTTATTTATCTATTA
12057818 CCATTTTTTT
Statistics
Matches: 151, Mismatches: 23, Indels: 33
0.73 0.11 0.16
Matches are distributed among these distances:
50 1 0.01
51 1 0.01
52 6 0.04
53 5 0.03
54 5 0.03
56 27 0.18
57 32 0.21
58 17 0.11
59 39 0.26
60 18 0.12
ACGTcount: A:0.25, C:0.05, G:0.02, T:0.67
Consensus pattern (56 bp):
TTTTTTATTTATCTATTATTATTATTTATTATTATATTTTTATTTATCTATTTATT
Found at i:12058724 original size:15 final size:15
Alignment explanation
Indices: 12058704--12058747 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 15
12058694 TTTTTTTTTC
12058704 ATTTATTATTTATTT
1 ATTTATTATTTATTT
12058719 ATTTATTA-TTA-TT
1 ATTTATTATTTATTT
12058732 ATTACTATTATTTATT
1 ATT--TATTATTTATT
12058748 GATTAGATTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
13 5 0.20
14 3 0.12
15 13 0.52
16 3 0.12
17 1 0.04
ACGTcount: A:0.30, C:0.02, G:0.00, T:0.68
Consensus pattern (15 bp):
ATTTATTATTTATTT
Found at i:12058796 original size:20 final size:20
Alignment explanation
Indices: 12058773--12058812 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
12058763 GTTTTAGTAC
12058773 TTTTTATTTTATTTTCTTTA
1 TTTTTATTTTATTTTCTTTA
12058793 TTTTTATTTTATTTTCTTTA
1 TTTTTATTTTATTTTCTTTA
12058813 AATAAAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.80
Consensus pattern (20 bp):
TTTTTATTTTATTTTCTTTA
Found at i:12058945 original size:58 final size:57
Alignment explanation
Indices: 12058824--12059035 Score: 218
Period size: 56 Copynumber: 3.7 Consensus size: 57
12058814 ATAAAATTCA
* * * *
12058824 AAAAAAAAATTTTAAGGAAAAGTTG-AAGTATC-AGTTTCCTTGAAAATAAGATTTTCAAA
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAG--TTTC--T
* *
12058883 AAAAAATATTTTTAAGGAAAATTTGAAAGTATCAATTTTTCTTGAAAATAAGCTTTCT
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAG-TTTCT
* * *
12058941 AAAAAATATTTTTGA-G-AAAGTTAAAAGTATCAATTTTCCTTAAAAATAAGTTT-T
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTCT
* * *
12058995 CAAAAATGGATTTTTGAGAAAAAGTTGAAAGTATCAATTTT
1 AAAAAAT--ATTTTTAAGGAAAAGTTGAAAGTATCAATTTT
12059036 TCATGTACAA
Statistics
Matches: 132, Mismatches: 15, Indels: 13
0.82 0.09 0.08
Matches are distributed among these distances:
54 7 0.05
55 3 0.02
56 38 0.29
57 1 0.01
58 34 0.26
59 22 0.17
60 11 0.08
61 16 0.12
ACGTcount: A:0.46, C:0.06, G:0.12, T:0.36
Consensus pattern (57 bp):
AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTCT
Found at i:12062217 original size:15 final size:15
Alignment explanation
Indices: 12062197--12062227 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
12062187 TTTGCATACA
*
12062197 TGCATTCTCATTCAT
1 TGCATTCTCACTCAT
12062212 TGCATTCTCACTCAT
1 TGCATTCTCACTCAT
12062227 T
1 T
12062228 ACACTTAACA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.19, C:0.29, G:0.06, T:0.45
Consensus pattern (15 bp):
TGCATTCTCACTCAT
Found at i:12069481 original size:20 final size:19
Alignment explanation
Indices: 12069453--12069510 Score: 75
Period size: 20 Copynumber: 3.1 Consensus size: 19
12069443 GCTTGAAATG
12069453 AAAAAAAAATGAAAATAAA
1 AAAAAAAAATGAAAATAAA
*
12069472 AAATAAAAAATGAAAATGAA
1 AAA-AAAAAATGAAAATAAA
*
12069492 AGAAAAAAA-GAAAA-AAA
1 AAAAAAAAATGAAAATAAA
12069509 AA
1 AA
12069511 GAAGTGAATG
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
17 3 0.09
18 5 0.15
19 9 0.26
20 17 0.50
ACGTcount: A:0.83, C:0.00, G:0.09, T:0.09
Consensus pattern (19 bp):
AAAAAAAAATGAAAATAAA
Found at i:12069492 original size:26 final size:26
Alignment explanation
Indices: 12069458--12069507 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
12069448 AAATGAAAAA
*
12069458 AAAATGAAA-ATAAAAAATAAAAAATG
1 AAAATGAAAGA-AAAAAAGAAAAAATG
12069484 AAAATGAAAGAAAAAAAGAAAAAA
1 AAAATGAAAGAAAAAAAGAAAAAA
12069508 AAAGAAGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 21 0.95
27 1 0.05
ACGTcount: A:0.80, C:0.00, G:0.10, T:0.10
Consensus pattern (26 bp):
AAAATGAAAGAAAAAAAGAAAAAATG
Found at i:12069504 original size:12 final size:11
Alignment explanation
Indices: 12069452--12069510 Score: 55
Period size: 11 Copynumber: 4.9 Consensus size: 11
12069442 TGCTTGAAAT
*
12069452 GAAAAAAAAAT
1 GAAAAAAAAAA
12069463 GAAAATAAAAAA
1 GAAAA-AAAAAA
*
12069475 TAAAAAATGAAAA
1 GAAAAAA--AAAA
12069488 TGAAAGAAAAAAA
1 -GAAA-AAAAAAA
12069501 GAAAAAAAAA
1 GAAAAAAAAA
12069511 GAAGTGAATG
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
11 13 0.32
12 13 0.32
13 8 0.20
14 3 0.08
15 3 0.08
ACGTcount: A:0.81, C:0.00, G:0.10, T:0.08
Consensus pattern (11 bp):
GAAAAAAAAAA
Found at i:12070567 original size:41 final size:41
Alignment explanation
Indices: 12070519--12070647 Score: 147
Period size: 41 Copynumber: 3.1 Consensus size: 41
12070509 ATGATTGTCA
12070519 AGGAGCAATTTATTTTCCAAAGTTGTGATGCCTTTGATTAG
1 AGGAGCAATTTATTTTCCAAAGTTGTGATGCCTTTGATTAG
* * * *
12070560 ATGAGCAATCTATTCTT-CAAAGTTGTGATGCCTCTGTTTAG
1 AGGAGCAATTTATT-TTCCAAAGTTGTGATGCCTTTGATTAG
** *
12070601 AGGAGCCGTTTA-TTTCCAAAAGTCGTTGA-GCCTTTGATTAG
1 AGGAGCAATTTATTTTCC-AAAGTTG-TGATGCCTTTGATTAG
12070642 AGGAGC
1 AGGAGC
12070648 TTTGTTTATG
Statistics
Matches: 73, Mismatches: 11, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
39 2 0.03
40 2 0.03
41 64 0.88
42 5 0.07
ACGTcount: A:0.26, C:0.16, G:0.23, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTATTTTCCAAAGTTGTGATGCCTTTGATTAG
Found at i:12070736 original size:45 final size:45
Alignment explanation
Indices: 12070619--12070741 Score: 194
Period size: 45 Copynumber: 2.7 Consensus size: 45
12070609 TTTATTTCCA
*
12070619 AAAGTCGTTGAGCCTTTGATTAGAGGAGCTTTGTTTATGTTTTTC
1 AAAGTCGTTGAGCCTTTGATTAGAGGAGTTTTGTTTATGTTTTTC
*
12070664 AAAGTCGTTGAGCCTCTGATTAGAGGAGTTTTGTTTATGTTTTTC
1 AAAGTCGTTGAGCCTTTGATTAGAGGAGTTTTGTTTATGTTTTTC
* *
12070709 AAAGTCGTTGAG-CTTTTACTTATAGGAGTTTTG
1 AAAGTCGTTGAGCCTTTGA-TTAGAGGAGTTTTG
12070742 ATCAAATTTT
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
44 4 0.06
45 68 0.94
ACGTcount: A:0.21, C:0.11, G:0.24, T:0.44
Consensus pattern (45 bp):
AAAGTCGTTGAGCCTTTGATTAGAGGAGTTTTGTTTATGTTTTTC
Found at i:12070980 original size:4 final size:4
Alignment explanation
Indices: 12070920--12071111 Score: 64
Period size: 4 Copynumber: 47.2 Consensus size: 4
12070910 GTATGCCCAT
*
12070920 TTTA TTT- TTTA TTTTA TATT- TTT- TTTC TTT- TTTA TTTGTA TCTTA
1 TTTA TTTA TTTA -TTTA T-TTA TTTA TTTA TTTA TTTA -TT-TA T-TTA
* * *
12070965 TGTA TTTA -TTA TTTA TTCA TTTA -TTA TTACTA TTTA TTAATA TATA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA TTTA TT--TA TTTA
* * * * *
12071011 TTTA TTT- TTTA TTTT TATTA TTTA TCTA -TTA GTATA TGTA TGTA TTTA
1 TTTA TTTA TTTA TTTA T-TTA TTTA TTTA TTTA -TTTA TTTA TTTA TTTA
* * * *
12071059 CTATTA TTTA TCTA TTTA TATA -TTA -TTA TTTA TCTA TTAA TATT- TTTA
1 -T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA T-TTA TTTA
12071107 TTTA T
1 TTTA T
12071112 CCAATTATTT
Statistics
Matches: 144, Mismatches: 21, Indels: 46
0.68 0.10 0.22
Matches are distributed among these distances:
3 29 0.20
4 82 0.57
5 20 0.14
6 13 0.09
ACGTcount: A:0.26, C:0.04, G:0.03, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:12070986 original size:8 final size:7
Alignment explanation
Indices: 12070962--12071111 Score: 89
Period size: 7 Copynumber: 20.6 Consensus size: 7
12070952 TATTTGTATC
12070962 TTATGTAT
1 TTAT-TAT
12070970 TTATTAT
1 TTATTAT
12070977 TTATTCAT
1 TTATT-AT
12070985 TTATTA-
1 TTATTAT
*
12070991 TTACTAT
1 TTATTAT
12070998 TTATTA-
1 TTATTAT
*
12071004 ATATATAT
1 TTAT-TAT
*
12071012 TTATTTT
1 TTATTAT
12071019 TTATT-T
1 TTATTAT
12071025 TTATTAT
1 TTATTAT
12071032 TTATCTA-
1 TTAT-TAT
12071039 TTAGTATAT
1 TTA-T-TAT
*
12071048 GTATGTATT
1 TTAT-TA-T
12071057 TACTATTAT
1 T--TATTAT
12071066 TTATCTAT
1 TTAT-TAT
12071074 TTA-TAT
1 TTATTAT
12071080 ATTATTAT
1 -TTATTAT
12071088 TTATCTA-
1 TTAT-TAT
*
12071095 TTAATAT
1 TTATTAT
12071102 TT-TTAT
1 TTATTAT
12071108 TTAT
1 TTAT
12071112 CCAATTATTT
Statistics
Matches: 114, Mismatches: 11, Indels: 35
0.71 0.07 0.22
Matches are distributed among these distances:
6 24 0.21
7 47 0.41
8 33 0.29
9 5 0.04
10 2 0.02
11 3 0.03
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (7 bp):
TTATTAT
Found at i:12071040 original size:42 final size:42
Alignment explanation
Indices: 12070967--12071086 Score: 122
Period size: 42 Copynumber: 2.9 Consensus size: 42
12070957 GTATCTTATG
*
12070967 TATTTATTATTTATTCATTTATTA-TTA-CTATTTATTAATATA
1 TATTTATTTTTTATT-ATTTATTATTTATCTA-TTATTAATATA
* *
12071009 TATTTATTTTTTATT-TTTATTATTTATCTATTAGT-ATATG
1 TATTTATTTTTTATTATTTATTATTTATCTATTATTAATATA
* ** *
12071049 TATGTATTTACTATTATTTATCTATTTATATATTATTA
1 TATTTATTTTTTATTATTTAT-TATTTATCTATTATTA
12071087 TTTATCTATT
Statistics
Matches: 65, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
40 23 0.35
41 12 0.18
42 30 0.46
ACGTcount: A:0.30, C:0.04, G:0.03, T:0.63
Consensus pattern (42 bp):
TATTTATTTTTTATTATTTATTATTTATCTATTATTAATATA
Found at i:12071108 original size:42 final size:42
Alignment explanation
Indices: 12071062--12071147 Score: 102
Period size: 42 Copynumber: 2.0 Consensus size: 42
12071052 GTATTTACTA
* * * *
12071062 TTATTTATCTATTTATATAT-TATTATTTATCTATTAATATTT
1 TTATTTATCCAATTAT-TATCTATTAATTATCTATTAACATTT
* *
12071104 TTATTTATCCAATTATTTTCTTTTAATTATCTATTAACATTT
1 TTATTTATCCAATTATTATCTATTAATTATCTATTAACATTT
12071146 TT
1 TT
12071148 TTATTTTATT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
41 2 0.05
42 35 0.95
ACGTcount: A:0.29, C:0.08, G:0.00, T:0.63
Consensus pattern (42 bp):
TTATTTATCCAATTATTATCTATTAATTATCTATTAACATTT
Found at i:12072067 original size:5 final size:5
Alignment explanation
Indices: 12072057--12072118 Score: 72
Period size: 5 Copynumber: 11.8 Consensus size: 5
12072047 TGTTTAGTAC
*
12072057 TTTTA TTTTA TTTTA TTTTAA TTTTTG TTTTCA TTTTTA TTTTA -TTTA
1 TTTTA TTTTA TTTTA TTTT-A -TTTTA TTTT-A -TTTTA TTTTA TTTTA
12072105 TTTTA TTTTA TTTT
1 TTTTA TTTTA TTTT
12072119 CTTTAAATAA
Statistics
Matches: 50, Mismatches: 2, Indels: 10
0.81 0.03 0.16
Matches are distributed among these distances:
4 4 0.08
5 36 0.72
6 2 0.04
7 8 0.16
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (5 bp):
TTTTA
Found at i:12072087 original size:12 final size:12
Alignment explanation
Indices: 12072057--12072118 Score: 58
Period size: 12 Copynumber: 5.2 Consensus size: 12
12072047 TGTTTAGTAC
12072057 TTTTATTTT-A-
1 TTTTATTTTAAT
12072067 TTTTATTTTAAT
1 TTTTATTTTAAT
* *
12072079 TTTTGTTTTCAT
1 TTTTATTTTAAT
*
12072091 TTTTATTTTATTT
1 TTTTATTTTA-AT
12072104 ATTTTATTTT-AT
1 -TTTTATTTTAAT
12072116 TTT
1 TTT
12072119 CTTTAAATAA
Statistics
Matches: 42, Mismatches: 6, Indels: 7
0.76 0.11 0.13
Matches are distributed among these distances:
10 9 0.21
11 4 0.10
12 19 0.45
13 1 0.02
14 9 0.21
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.79
Consensus pattern (12 bp):
TTTTATTTTAAT
Found at i:12072123 original size:14 final size:14
Alignment explanation
Indices: 12072058--12072117 Score: 61
Period size: 14 Copynumber: 4.2 Consensus size: 14
12072048 GTTTAGTACT
12072058 TTTATTTTATTTTA
1 TTTATTTTATTTTA
*
12072072 TTTTAATTTT-TGTT-
1 -TTT-ATTTTATTTTA
*
12072086 TTCATTTTTATTTTA
1 TTTA-TTTTATTTTA
12072101 TTTATTTTATTTTA
1 TTTATTTTATTTTA
12072115 TTT
1 TTT
12072118 TCTTTAAATA
Statistics
Matches: 37, Mismatches: 4, Indels: 9
0.74 0.08 0.18
Matches are distributed among these distances:
12 1 0.03
13 6 0.16
14 16 0.43
15 9 0.24
16 5 0.14
ACGTcount: A:0.18, C:0.02, G:0.02, T:0.78
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:12072198 original size:58 final size:58
Alignment explanation
Indices: 12072136--12072351 Score: 242
Period size: 62 Copynumber: 3.7 Consensus size: 58
12072126 TAAAATTCAA
*
12072136 AAAAAATATTTTTAAGGAAAAGTTGAAACTATCAATTTTCCTTGAAAATAAGTTTTTC
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTC
* * *
12072194 AAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAG-TTTTC
1 ----AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTC
* * * *
12072255 -AAAAATGGATTTTTAAGGAAAAATTGAAAGTATCGATTTTCCTTGAAATTAAAGTTTCT-
1 AAAAAAT--ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAGTTTTTC
** *
12072314 AAAAAATA-TTTTGGGGAAAAGTTGAAGGTATCAATTTT
1 AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTT
12072352 TTCTGTACAA
Statistics
Matches: 133, Mismatches: 16, Indels: 15
0.81 0.10 0.09
Matches are distributed among these distances:
56 6 0.05
57 25 0.19
58 37 0.28
59 3 0.02
60 9 0.07
61 5 0.04
62 48 0.36
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.37
Consensus pattern (58 bp):
AAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTC
Found at i:12072208 original size:62 final size:62
Alignment explanation
Indices: 12072134--12072351 Score: 231
Period size: 58 Copynumber: 3.7 Consensus size: 62
12072124 AATAAAATTC
*
12072134 AAAAAAAATATTTTTAAGGAAAAGTTGAAACTATCAATTTTCCTTGAAAATAAGTTTTTCAA
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTCAA
* * *
12072196 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTTCTTAAAAATAAG-TTTTC--
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTCAA
*** * * *
12072255 -AAAAATGGATTTTTAAGGAAAAATTGAAAGTATCGATTTTCCTTGAAATTAAAG--TTTC--
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAGTTTTTCAA
* ** *
12072313 -TAAAAAATA-TTTTGGGGAAAAGTTGAAGGTATCAATTTT
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTT
12072352 TTCTGTACAA
Statistics
Matches: 133, Mismatches: 22, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
57 25 0.19
58 50 0.38
59 3 0.02
61 5 0.04
62 50 0.38
ACGTcount: A:0.44, C:0.06, G:0.14, T:0.36
Consensus pattern (62 bp):
AAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAGTTTTTCAA
Done.