Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 65 of 195
Found at i:12838236 original size:6 final size:6
Alignment explanation
Indices: 12838177--12838223 Score: 76
Period size: 6 Copynumber: 7.8 Consensus size: 6
12838167 TTTTCTTGGT
* *
12838177 TTTTTG TTTTTG TTTTTG TTTTTG CTTTTG TTTTTG TTTTTA TTTTT
1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTTT
12838224 TATTTTTTGT
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 38 1.00
ACGTcount: A:0.02, C:0.02, G:0.13, T:0.83
Consensus pattern (6 bp):
TTTTTG
Found at i:12838236 original size:19 final size:18
Alignment explanation
Indices: 12838104--12838236 Score: 94
Period size: 19 Copynumber: 6.9 Consensus size: 18
12838094 CTTCCTTCCC
*
12838104 TTTTTTGTTTTGTTTTAT
1 TTTTTTTTTTTGTTTTAT
12838122 TTTTTTTTCATTT-TTTTAT
1 TTTTTTTT--TTTGTTTTAT
12838141 TTTTTTATTTTT-TTTTATTT
1 TTTTTT-TTTTTGTTTTA--T
12838161 TTTTTATTTTCTTGGTTTT-T
1 TTTTT-TTTT-TT-GTTTTAT
12838181 TGTTTTTGTTTTTGTTTT-T
1 T-TTTTT-TTTTTGTTTTAT
* *
12838200 GCTTTTGTTTTTGTTTTTAT
1 -TTTTTTTTTTTG-TTTTAT
12838220 TTTTTATTTTTTGTTTT
1 TTTTT-TTTTTTGTTTT
12838237 GTGAAAAAAT
Statistics
Matches: 95, Mismatches: 5, Indels: 29
0.74 0.04 0.22
Matches are distributed among these distances:
18 21 0.22
19 34 0.36
20 26 0.27
21 10 0.11
23 4 0.04
ACGTcount: A:0.06, C:0.02, G:0.08, T:0.83
Consensus pattern (18 bp):
TTTTTTTTTTTGTTTTAT
Found at i:12838541 original size:70 final size:70
Alignment explanation
Indices: 12838385--12838541 Score: 174
Period size: 70 Copynumber: 2.2 Consensus size: 70
12838375 TTAGGGAATA
* * * * *
12838385 AAAATGACCGAGATTGAATTGAAAGTCAAGAAATAAATATGATCAGGATTAAGCCATTAGTCGAG
1 AAAATGACTGGGATTGAATTGAAAGTCAAGAAATAAAGATGATCAGGATTAAGCCATGAGTCAAG
12838450 AAATG
66 AAATG
* ** * *
12838455 AAAATGACTGGAATTGAATTGTGAGTCAA-AAATTAGAGATGATCGGGATTGAA-CCATGAGTCA
1 AAAATGACTGGGATTGAATTGAAAGTCAAGAAA-TAAAGATGATCAGGATT-AAGCCATGAGTCA
12838518 AGAAATG
64 AGAAATG
* *
12838525 AATATGATTGGGATTGA
1 AAAATGACTGGGATTGA
12838542 GCCGCAAGTC
Statistics
Matches: 72, Mismatches: 13, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
69 3 0.04
70 67 0.93
71 2 0.03
ACGTcount: A:0.43, C:0.08, G:0.24, T:0.25
Consensus pattern (70 bp):
AAAATGACTGGGATTGAATTGAAAGTCAAGAAATAAAGATGATCAGGATTAAGCCATGAGTCAAG
AAATG
Found at i:12838566 original size:70 final size:70
Alignment explanation
Indices: 12838491--12838867 Score: 286
Period size: 70 Copynumber: 5.4 Consensus size: 70
12838481 CAAAAATTAG
* * *
12838491 AGATGATCGGGATTGAACCATGAGTCAAGAAATGAATATGATTGGGATTGAGCCGCAAGTCGGAG
1 AGATGATCGGGATTGAACCATGAGTCAAGAAATAAATATGATTAGGATTGAGCCGCAAGTCAGAG
12838556 AATAA
66 AATAA
* * * * * * *
12838561 GGATGATTGGGATTGAACCA-AAGCCAAGAAATAAATATGATTAGAACTGAGCCGCAAGT-TGAA
1 AGATGATCGGGATTGAACCATGAGTCAAGAAATAAATATGATTAGGATTGAGCCGCAAGTCAG-A
*
12838624 AAATGAA
65 GAAT-AA
* * * ** * * ** *
12838631 A-ATGA-CTAGGATTGAACTATAAGTTGAGAAATAGATATAATCTA-GATTGAGCTTCAAGTCAA
1 AGATGATC-GGGATTGAACCATGAGTCAAGAAATAAATATGAT-TAGGATTGAGCCGCAAGTCAG
12838693 AGAATAA
64 AGAATAA
* * * **
12838700 AGATGATTGAGATTGAACCATGAGTCGAGAAATAAATATG-TCTAGGATTGAGTTGCAAGTC-GA
1 AGATGATCGGGATTGAACCATGAGTCAAGAAATAAATATGAT-TAGGATTGAGCCGCAAGTCAGA
*
12838763 GAAACAA
65 G-AATAA
* * * * * * * *
12838770 AAATGATTGGGATTGAACCACGAGTCAAGAAATAAATATAACT-GGAACTAAGCCTCAAGTCAGA
1 AGATGATCGGGATTGAACCATGAGTCAAGAAATAAATATGATTAGG-ATTGAGCCGCAAGTCAGA
12838834 GAATAA
65 GAATAA
* *
12838840 AGATGA-CTAGGATTGAACCACGAGTCAA
1 AGATGATC-GGGATTGAACCATGAGTCAA
12838868 AAAAAAAGAA
Statistics
Matches: 240, Mismatches: 53, Indels: 28
0.75 0.17 0.09
Matches are distributed among these distances:
68 1 0.00
69 62 0.26
70 172 0.72
71 5 0.02
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (70 bp):
AGATGATCGGGATTGAACCATGAGTCAAGAAATAAATATGATTAGGATTGAGCCGCAAGTCAGAG
AATAA
Found at i:12838865 original size:140 final size:137
Alignment explanation
Indices: 12838493--12838867 Score: 365
Period size: 140 Copynumber: 2.7 Consensus size: 137
12838483 AAAATTAGAG
* * * * * *
12838493 ATGATCGGGATTGAACCATGAGTCAAGAAATGAATATGATTGGGATTGAGCCGCAAGTCGGAGAA
1 ATGATTGGGATTGAACCATGAGTCAAGAAATAAATATAACT-GGATTGAGCCTCAAGTCAGAGAA
* * * * *
12838558 TAAGGATGATTGGGATTGAACCAAAGCCAAGAAATAAATATGATTAGAACTGAGCCGCAAGTTGA
65 TAAAGATGA-TAGGATTGAACCAGAGTCAAGAAATAAATATGATTAGAACTGAGCCGCAAGTCGA
**
12838623 AAAATGAAA
129 AAAACAAAA
* * * * ** * * * *
12838632 ATGACTAGGATTGAACTATAAGTTGAGAAATAGATATAATCTAGATTGAGCTTCAAGTCAAAGAA
1 ATGATTGGGATTGAACCATGAGTCAAGAAATAAATATAA-CTGGATTGAGCCTCAAGTCAGAGAA
* * * * **
12838697 TAAAGATGATTGAGATTGAACCATGAGTCGAGAAATAAATATG-TCTAGGATTGAGTTGCAAGTC
65 TAAAGATGATAG-GATTGAACCA-GAGTCAAGAAATAAATATGAT-TAGAACTGAGCCGCAAGTC
*
12838761 GAGAAACAAAA
127 GAAAAACAAAA
* * *
12838772 ATGATTGGGATTGAACCACGAGTCAAGAAATAAATATAACTGGAACTAAGCCTCAAGTCAGAGAA
1 ATGATTGGGATTGAACCATGAGTCAAGAAATAAATATAACTGG-ATTGAGCCTCAAGTCAGAGAA
12838837 TAAAGATGACTAGGATTGAACCACGAGTCAA
65 TAAAGATGA-TAGGATTGAACCA-GAGTCAA
12838868 AAAAAAAGAA
Statistics
Matches: 185, Mismatches: 45, Indels: 11
0.77 0.19 0.05
Matches are distributed among these distances:
138 2 0.01
139 69 0.37
140 112 0.61
141 2 0.01
ACGTcount: A:0.42, C:0.12, G:0.24, T:0.22
Consensus pattern (137 bp):
ATGATTGGGATTGAACCATGAGTCAAGAAATAAATATAACTGGATTGAGCCTCAAGTCAGAGAAT
AAAGATGATAGGATTGAACCAGAGTCAAGAAATAAATATGATTAGAACTGAGCCGCAAGTCGAAA
AACAAAA
Found at i:12838866 original size:35 final size:36
Alignment explanation
Indices: 12838687--12838866 Score: 106
Period size: 35 Copynumber: 5.1 Consensus size: 36
12838677 TTGAGCTTCA
* * *
12838687 AGTCAAAG-AATAAAGATGA-TTGAGATTGAACCATG
1 AGTCAGAGAAATAAAGATGACTAG-GATTGAACCACG
* * **** *
12838722 AGTC-GAGAAATAAATATGTCTAGGATTGAGTTGCA
1 AGTCAGAGAAATAAAGATGACTAGGATTGAACCACG
* * * *
12838757 AGTC-GAGAAACAAAAATGATTGGGATTGAACCACG
1 AGTCAGAGAAATAAAGATGACTAGGATTGAACCACG
* * * * *
12838792 AGTCA-AGAAATAAATATAACT-GGAACT-AAGCCTCA
1 AGTCAGAGAAATAAAGATGACTAGG-ATTGAA-CCACG
12838827 AGTCAGAG-AATAAAGATGACTAGGATTGAACCACG
1 AGTCAGAGAAATAAAGATGACTAGGATTGAACCACG
12838862 AGTCA
1 AGTCA
12838867 AAAAAAAAGA
Statistics
Matches: 105, Mismatches: 32, Indels: 16
0.69 0.21 0.10
Matches are distributed among these distances:
34 6 0.06
35 91 0.87
36 8 0.08
ACGTcount: A:0.43, C:0.13, G:0.23, T:0.21
Consensus pattern (36 bp):
AGTCAGAGAAATAAAGATGACTAGGATTGAACCACG
Found at i:12839029 original size:33 final size:33
Alignment explanation
Indices: 12838992--12839086 Score: 111
Period size: 34 Copynumber: 2.8 Consensus size: 33
12838982 GGACTTATGT
* *
12838992 GCCAGTTTAACTGGGCTTAAAATTTCATTAGGG
1 GCCAGTTAAACTGGGCTTAAAATTTCATTAAGG
* **
12839025 GCCAGATAAACTAAGCTTAAAATTTTCATTAAGG
1 GCCAGTTAAACTGGGCTTAAAA-TTTCATTAAGG
*
12839059 GCCA-TATCAACTGGGCTTAAAATTTCAT
1 GCCAGT-TAAACTGGGCTTAAAATTTCAT
12839087 CGAAGGCTAA
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
33 24 0.47
34 27 0.53
ACGTcount: A:0.34, C:0.17, G:0.18, T:0.32
Consensus pattern (33 bp):
GCCAGTTAAACTGGGCTTAAAATTTCATTAAGG
Found at i:12839199 original size:34 final size:34
Alignment explanation
Indices: 12839158--12839546 Score: 204
Period size: 34 Copynumber: 11.5 Consensus size: 34
12839148 TTGTACTAGC
* *
12839158 TAAATTGGGCTTAAAATCTTTTTTTGGTGCCAGA
1 TAAACTGGGCTTAAAATCTTTATTTGGTGCCAGA
* *
12839192 TAAATTGGGCTTAAAAT-TTCATTTGGTGCCA-A
1 TAAACTGGGCTTAAAATCTTTATTTGGTGCCAGA
* * * ** *
12839224 CTAAGCTGGGCTTTAAAATCATCATCAGGTGTCA-A
1 -TAAACTGGGC-TTAAAATCTTTATTTGGTGCCAGA
* * * * *
12839259 GTAAACTAGGCTTAAAATCTTTCTTTAGTACCAAA
1 -TAAACTGGGCTTAAAATCTTTATTTGGTGCCAGA
* * * * *
12839294 TAAACTGGGCTTAAAATCTCTCTTAGCTGTCA-A
1 TAAACTGGGCTTAAAATCTTTATTTGGTGCCAGA
** * * *
12839327 GTAAACTACGCTTAAAAT-TTCCATTAGGTGCTA-A
1 -TAAACTGGGCTTAAAATCTT-TATTTGGTGCCAGA
* *
12839361 GTAAACTGGGCTT-AAA-CTTTCA-TTGATGCCAGG
1 -TAAACTGGGCTTAAAATCTTT-ATTTGGTGCCAGA
** * * ** *
12839394 TAAACTATGCTTAAAATATTTCTTTAATGCCAAA
1 TAAACTGGGCTTAAAATCTTTATTTGGTGCCAGA
* * * *
12839428 TAAATTGGGCTTAAAAT-TTTATTGGGTGCTAGC
1 TAAACTGGGCTTAAAATCTTTATTTGGTGCCAGA
** * * *
12839461 TAAGTTGGGCTTAAAATCTCTCTTTAGGTGCCAGG
1 TAAACTGGGCTTAAAATCTTTATTT-GGTGCCAGA
* * *
12839496 TAAACTGGGCTTAACATTTTTCTTTGGTGCCAGA
1 TAAACTGGGCTTAAAATCTTTATTTGGTGCCAGA
* *
12839530 TTAACTGGGATTAAAAT
1 TAAACTGGGCTTAAAAT
12839547 TTCGTTAAGT
Statistics
Matches: 268, Mismatches: 73, Indels: 28
0.73 0.20 0.08
Matches are distributed among these distances:
32 17 0.06
33 56 0.21
34 148 0.55
35 47 0.18
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (34 bp):
TAAACTGGGCTTAAAATCTTTATTTGGTGCCAGA
Found at i:12839342 original size:102 final size:102
Alignment explanation
Indices: 12839165--12839376 Score: 225
Period size: 102 Copynumber: 2.1 Consensus size: 102
12839155 AGCTAAATTG
* * * * * * * *
12839165 GGCTTAAAATCTTTTTTTGGTGCCAGATAAATTGGGCTTAAAATTTCATTTGGTGCCAACTAAGC
1 GGCTTAAAATCTTTCTTTAGTACCAAATAAACTGGGCTTAAAATTTCATTAGCTGCCAACTAAAC
**
12839230 TGGGCTTTAAAATCAT-CATCAGGTG-TCAAGTAAACTA
66 TACGCTTTAAAAT-ATCCATCAGGTGCT-AAGTAAACTA
* *
12839267 GGCTTAAAATCTTTCTTTAGTACCAAATAAACTGGGCTTAAAATCTCTC-TTAGCTGTCAAGTAA
1 GGCTTAAAATCTTTCTTTAGTACCAAATAAACTGGGCTTAAAAT-T-TCATTAGCTGCCAACTAA
* * *
12839331 ACTACGC-TTAAAATTTCCATTAGGTGCTAAGTAAACTG
64 ACTACGCTTTAAAATATCCATCAGGTGCTAAGTAAACTA
12839369 GGCTTAAA
1 GGCTTAAA
12839377 CTTTCATTGA
Statistics
Matches: 91, Mismatches: 15, Indels: 8
0.80 0.13 0.07
Matches are distributed among these distances:
101 1 0.01
102 71 0.78
103 17 0.19
104 2 0.02
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Consensus pattern (102 bp):
GGCTTAAAATCTTTCTTTAGTACCAAATAAACTGGGCTTAAAATTTCATTAGCTGCCAACTAAAC
TACGCTTTAAAATATCCATCAGGTGCTAAGTAAACTA
Found at i:12839437 original size:66 final size:65
Alignment explanation
Indices: 12839256--12839583 Score: 196
Period size: 67 Copynumber: 4.9 Consensus size: 65
12839246 CATCAGGTGT
* * *
12839256 CAAGTAAACTAGGCTTAAAATCTTTCTTTAGTACCAAATAAACTGGGCTTAAAATCTCTC-TTAG
1 CAAGTAAACTACGCTTAAAAT-TTTCTTTAGTGCCAAATAAACTGGGCTT-AAA-CTTTCATT-G
* *
12839320 CTGT
62 ATGC
* * * *
12839324 CAAGTAAACTACGCTTAAAATTTCCATTAGGTGCTAAGTAAACTGGGCTTAAACTTTCATTGATG
1 CAAGTAAACTACGCTTAAAATTTTCTTTA-GTGCCAAATAAACTGGGCTTAAACTTTCATTGATG
12839389 C
65 C
* * * * * * *
12839390 CAGGTAAACTATGCTTAAAATATTTCTTTAATGCCAAATAAATTGGGCTTAAAATTTTATTGGGT
1 CAAGTAAACTACGCTTAAAAT-TTTCTTTAGTGCCAAATAAACTGGGCTTAAACTTTCATT-GAT
12839455 G-
64 GC
* ** ** * ** * *
12839456 CTAGCTAAGTTGGGCTTAAAATCTCTCTTTAGGTGCCAGGTAAACTGGGCTTAACATTTTTCTTT
1 CAAG-TAAACTACGCTTAAAAT-TTTCTTTA-GTGCCAAATAAACTGGGCTTAA-A-CTTTCATT
*
12839521 GGTGC
61 GATGC
* ** * * **
12839526 C-AGATTAACTGGGATTAAAA-TTTCGTTAAGTGCCAAATAAGTTGGGCTTAAACTTTCA
1 CAAG-TAAACTACGCTTAAAATTTTC-TTTAGTGCCAAATAAACTGGGCTTAAACTTTCA
12839584 CTAGTGCTAG
Statistics
Matches: 202, Mismatches: 48, Indels: 23
0.74 0.18 0.08
Matches are distributed among these distances:
65 4 0.02
66 54 0.27
67 61 0.30
68 58 0.29
69 19 0.09
70 6 0.03
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (65 bp):
CAAGTAAACTACGCTTAAAATTTTCTTTAGTGCCAAATAAACTGGGCTTAAACTTTCATTGATGC
Found at i:12839437 original size:236 final size:236
Alignment explanation
Indices: 12839113--12839546 Score: 541
Period size: 236 Copynumber: 1.8 Consensus size: 236
12839103 TAGGTTTAAA
* * * *
12839113 ATTAGGTGATAGCTAAACTAGGCTTAAACTTTCACTTGTACTAGCTAAATTGGGCTTAAAATCTT
1 ATTAGGTGATAGCTAAACTAGGCTTAAACTTTCACTTGTACCAGCTAAACTAGGCTTAAAATATT
* ** * *
12839178 TTTTTGGTGCCAGATAAATTGGGCTTAAAATTTCATTTGGTGCCAACTAAGCTGGGCTTTAAAAT
66 TCTTTAATGCCAAATAAATTGGGCTTAAAATTTCATTGGGTGCCAACTAAGCTGGGC-TTAAAAT
* *
12839243 C-ATCATCAGGTGTCAAGTAAACTAGGCTTAAAATCTTTCTTTAGTACCAAATAAACTGGGCTTA
130 CTATCATCAGGTGCCAAGTAAACTAGGCTTAAAATCTTTCTTTAGTACCAAATAAACTGGGATTA
12839307 AAATCTCTCTTAGCTGTCAAGTAAACTACGCTTAAAATTTCC
195 AAATCTCTCTTAGCTGTCAAGTAAACTACGCTTAAAATTTCC
* * * * *
12839349 ATTAGGTGCTAAG-TAAACTGGGCTTAAACTTTCA-TTGATGCCAGGTAAACTATGCTTAAAATA
1 ATTAGGTGAT-AGCTAAACTAGGCTTAAACTTTCACTTG-TACCAGCTAAACTAGGCTTAAAATA
* * * *
12839412 TTTCTTTAATGCCAAATAAATTGGGCTTAAAATTTTATTGGGTGCTAGCTAAGTTGGGCTTAAAA
64 TTTCTTTAATGCCAAATAAATTGGGCTTAAAATTTCATTGGGTGCCAACTAAGCTGGGCTTAAAA
* * * * * * * * * * *
12839477 TCTCTCTTTAGGTGCCAGGTAAACTGGGCTTAACATTTTTCTTTGGTGCCAGATTAACTGGGATT
129 TCTATCATCAGGTGCCAAGTAAACTAGGCTTAAAATCTTTCTTTAGTACCAAATAAACTGGGATT
12839542 AAAAT
194 AAAAT
12839547 TTCGTTAAGT
Statistics
Matches: 164, Mismatches: 31, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
235 11 0.07
236 151 0.92
237 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.18, T:0.35
Consensus pattern (236 bp):
ATTAGGTGATAGCTAAACTAGGCTTAAACTTTCACTTGTACCAGCTAAACTAGGCTTAAAATATT
TCTTTAATGCCAAATAAATTGGGCTTAAAATTTCATTGGGTGCCAACTAAGCTGGGCTTAAAATC
TATCATCAGGTGCCAAGTAAACTAGGCTTAAAATCTTTCTTTAGTACCAAATAAACTGGGATTAA
AATCTCTCTTAGCTGTCAAGTAAACTACGCTTAAAATTTCC
Found at i:12839598 original size:201 final size:201
Alignment explanation
Indices: 12839367--12839750 Score: 445
Period size: 201 Copynumber: 1.9 Consensus size: 201
12839357 CTAAGTAAAC
* *
12839367 TGGGCTTAAACTTTCATTGATGCCAGGT-AAACTATGCTTAAAATATTTCTT-T-AA-TGCCAAA
1 TGGGCTTAAACTTTCATAGATGCCAGGTAAAACTAGGCTT--AAT-TTT-TTGTCAAGTGCCAAA
* * * * * *
12839428 TAAATTGGGCTTAAAATTTTATTGGGTGCTAGCTAAGTTGGGCTTAAAATCTCTCTTTAGGTGCC
62 TAAACTAGGCTTAAAATTTCATTGGGTGCCAACTAAGCTGGGCTTAAAATCTCTCTTTAGGTGCC
* * ** * * * *
12839493 AGGTAAACTGGGCTTAACATTTTTCTTTGGTGCCAGATTAACTGGGATTAAAATTTCGTTAAGTG
127 AAGTAAACTAGGAATAACATATTTCGTTGGTGCCAGATAAACTAGGATTAAAATTTCGTTAAGTG
12839558 CCAAATAAGT
192 CCAAATAAGT
* * * **
12839568 TGGGCTTAAACTTTCACTAG-TGCTAGGTAAAATTAGGCTTAATTTTTTGTCAAGTGCTAGGTAA
1 TGGGCTTAAACTTTCA-TAGATGCCAGGTAAAACTAGGCTTAATTTTTTGTCAAGTGCCAAATAA
* * *
12839632 ACTAGGCTTAAAATTTCATTGGGTGCCAACTAAGCTGGGCTTAAAATCTTTTTTTGGGTGCCAAG
65 ACTAGGCTTAAAATTTCATTGGGTGCCAACTAAGCTGGGCTTAAAATCTCTCTTTAGGTGCCAAG
* * *
12839697 TAAACTAGGAATAACATATTTCGTTGTTGCCAGATAAACTAGGCTTAAACTTTC
130 TAAACTAGGAATAACATATTTCGTTGGTGCCAGATAAACTAGGATTAAAATTTC
12839751 ACTGGTGTTA
Statistics
Matches: 151, Mismatches: 27, Indels: 10
0.80 0.14 0.05
Matches are distributed among these distances:
198 2 0.01
199 4 0.03
200 5 0.03
201 129 0.85
202 11 0.07
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (201 bp):
TGGGCTTAAACTTTCATAGATGCCAGGTAAAACTAGGCTTAATTTTTTGTCAAGTGCCAAATAAA
CTAGGCTTAAAATTTCATTGGGTGCCAACTAAGCTGGGCTTAAAATCTCTCTTTAGGTGCCAAGT
AAACTAGGAATAACATATTTCGTTGGTGCCAGATAAACTAGGATTAAAATTTCGTTAAGTGCCAA
ATAAGT
Found at i:12839609 original size:168 final size:167
Alignment explanation
Indices: 12839428--12839844 Score: 418
Period size: 168 Copynumber: 2.5 Consensus size: 167
12839418 TAATGCCAAA
* ** * *
12839428 TAAATTGGGCTTAAAATTTTATTGGGTGCTAGCTAAGTTGGGCTTAAAATCTCTCTTTAGGTGCC
1 TAAATTAGGCTTAAAATTTTATCAGGTGCTAG-TAAATTGGGCTTAAAATCT-TCATTAGGTGCC
* * * * *
12839493 AGGTAAACTGGGCTTAACAT-TTTTCTTT-GGTGCC-AGATTAACTGGGATTAA-A-ATTTCGTT
64 AAGTAAACTGGGCTTAAAATCTTTT-TTTGGGTGCCAAG-TAAACTAGGAATAACATATTTCGTT
** *
12839553 AAG-TGCCAAATAAGTTGGGCTTAAACTTTCACTAGTGCTAGG
127 --GTTGCCAAATAAACTAGGCTTAAACTTTCACTAGTGCTAGG
** * * * * *
12839595 TAAAATTAGGCTTAATTTTTTGTCAAGTGCTAGGTAAACTAGGCTTAAAAT-TTCATTGGGTGCC
1 T-AAATTAGGCTTAAAATTTTATCAGGTGCTA-GTAAATTGGGCTTAAAATCTTCATTAGGTGCC
* *
12839659 AACTAAGCTGGGCTTAAAATCTTTTTTTGGGTGCCAAGTAAACTAGGAATAACATATTTCGTTGT
64 AAGTAAACTGGGCTTAAAATCTTTTTTTGGGTGCCAAGTAAACTAGGAATAACATATTTCGTTGT
* * *
12839724 TGCCAGATAAACTAGGCTTAAACTTTCACTGGTGTTAGG
129 TGCCAAATAAACTAGGCTTAAACTTTCACTAGTGCTAGG
* * * *
12839763 TAAACTAGGTTTAAAATTTTCATCAGGTGCCATGTAAATTGGGCTTAAACT-TTCATTAGGTGCC
1 TAAATTAGGCTTAAAATTTT-ATCAGGTGCTA-GTAAATTGGGCTTAAAATCTTCATTAGGTGCC
*
12839827 AAGTAAACTAGGCTTAAA
64 AAGTAAACTGGGCTTAAA
12839845 CTTTCACTAG
Statistics
Matches: 201, Mismatches: 40, Indels: 17
0.78 0.16 0.07
Matches are distributed among these distances:
166 29 0.14
167 39 0.19
168 124 0.62
169 9 0.04
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.35
Consensus pattern (167 bp):
TAAATTAGGCTTAAAATTTTATCAGGTGCTAGTAAATTGGGCTTAAAATCTTCATTAGGTGCCAA
GTAAACTGGGCTTAAAATCTTTTTTTGGGTGCCAAGTAAACTAGGAATAACATATTTCGTTGTTG
CCAAATAAACTAGGCTTAAACTTTCACTAGTGCTAGG
Found at i:12839811 original size:34 final size:34
Alignment explanation
Indices: 12839628--12840196 Score: 157
Period size: 34 Copynumber: 17.0 Consensus size: 34
12839618 CAAGTGCTAG
** *
12839628 GTAAACTAGGCTTAAAA-TTTCATTGGGTGCCAA
1 GTAAACTAGGCTTAAAATTTTCATCAGGTGCCAT
* * * ** ** *
12839661 CTAAGCTGGGCTTAAAATCTTTTTTTGGGTGCCAA
1 GTAAACTAGGCTTAAAAT-TTTCATCAGGTGCCAT
** * * * *
12839696 GTAAACTAGGAATAACATATTTCGT-TGTTGCCA-
1 GTAAACTAGGCTTAAAAT-TTTCATCAGGTGCCAT
* * ** *
12839729 GATAAACTAGGCTT-AAACTTTCA-CTGGTGTTAG
1 G-TAAACTAGGCTTAAAATTTTCATCAGGTGCCAT
*
12839762 GTAAACTAGGTTTAAAATTTTCATCAGGTGCCAT
1 GTAAACTAGGCTTAAAATTTTCATCAGGTGCCAT
* * * * *
12839796 GTAAATTGGGCTT-AAACTTTCATTAGGTGCCAA
1 GTAAACTAGGCTTAAAATTTTCATCAGGTGCCAT
*
12839829 GTAAACTAGGCTT-AAACTTTCA-CTAGGTGCC-T
1 GTAAACTAGGCTTAAAATTTTCATC-AGGTGCCAT
* ** * * * *
12839861 ACTAAGTTAGGCTTAAACTTTTCATCAAGTGCTAG
1 -GTAAACTAGGCTTAAAATTTTCATCAGGTGCCAT
* * * *
12839896 GTAAACTGGGCTTAAAATTTTCATTAGGTGCTAA
1 GTAAACTAGGCTTAAAATTTTCATCAGGTGCCAT
* * * * *
12839930 CTAAGCTAGGCTTAGAA-CTTCATTA-GTGCCA-
1 GTAAACTAGGCTTAAAATTTTCATCAGGTGCCAT
* * * * * *
12839961 GATAAAATAGGGCTTAAAATCTTTCTTTAGATGCTAA
1 G-TAAACTA-GGCTTAAAAT-TTTCATCAGGTGCCAT
* * * * * * *
12839998 GTAAACTAGACTT-AAACTATCAT-TGATGTCAA
1 GTAAACTAGGCTTAAAATTTTCATCAGGTGCCAT
* * * * * *
12840030 ATAAATTAGGCTTAACATCTTTCTTTA-GTGCCAA
1 GTAAACTAGGCTTAAAAT-TTTCATCAGGTGCCAT
* * * * *
12840064 ATAAACTGGGCTTAAAA-TTTCATTAGATGCCAA
1 GTAAACTAGGCTTAAAATTTTCATCAGGTGCCAT
* ** * * * * *
12840097 CTACGCTGGGCTT-AAACTTTGA-CTGGTGCCAG
1 GTAAACTAGGCTTAAAATTTTCATCAGGTGCCAT
* * * * *
12840129 GTAAAACTAAGCTTAAAATTTTTATCAAGTGCTAC
1 GT-AAACTAGGCTTAAAATTTTCATCAGGTGCCAT
* * *
12840164 GTAAACTATGCTTAAAATCTTCATTAGGTGCCA
1 GTAAACTAGGCTTAAAATTTTCATCAGGTGCCA
12840197 GGTCAATTGG
Statistics
Matches: 392, Mismatches: 118, Indels: 51
0.70 0.21 0.09
Matches are distributed among these distances:
32 63 0.16
33 128 0.33
34 141 0.36
35 49 0.12
36 10 0.03
37 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (34 bp):
GTAAACTAGGCTTAAAATTTTCATCAGGTGCCAT
Found at i:12839897 original size:134 final size:135
Alignment explanation
Indices: 12839488--12840226 Score: 505
Period size: 134 Copynumber: 5.5 Consensus size: 135
12839478 CTCTCTTTAG
* * * * * * * *
12839488 GTGCCAGGTAAACTGGGCTTAACATTTTTC-TTTGGTGCCAGA-TTAACTGGGATTAAAATTTCG
1 GTGCTAGGTAAACTAGGCTTAA-AATTTTCATTAGGTGCCA-ACTAAACTGGGCTTAAACTTTCA
* * ** * * *
12839551 TTAAGTGCCAAATAAGTTGGGCTTAAACTTTCACTA-GTG-CTAGGTAAAATTAGGCTT-AATTT
64 TTAGGTGCCAAGTAAACTAGGCTTAAACTTTCACTAGGTGCCTAGGT-AAACTAGGCTTAAACTT
**
12839613 TTTGTCAA
128 TTCATCAA
* * **
12839621 GTGCTAGGTAAACTAGGCTTAAAA-TTTCATTGGGTGCCAACTAAGCTGGGCTTAAAATCTTTTT
1 GTGCTAGGTAAACTAGGCTTAAAATTTTCATTAGGTGCCAACTAAACTGGGCTT-AAA-CTTTCA
* ** * * * * *
12839685 TTGGGTGCCAAGTAAACTAGGAATAACATATTTC-GTTGTTGCC-AGATAAACTAGGCTTAAAC-
64 TTAGGTGCCAAGTAAACTAGGCTTAA-A-CTTTCACTAGGTGCCTAGGTAAACTAGGCTTAAACT
**
12839747 TTTCA-CTG
127 TTTCATCAA
* * * ** *
12839755 GTGTTAGGTAAACTAGGTTTAAAATTTTCATCAGGTGCCATGTAAATTGGGCTTAAACTTTCATT
1 GTGCTAGGTAAACTAGGCTTAAAATTTTCATTAGGTGCCAACTAAACTGGGCTTAAACTTTCATT
* **
12839820 AGGTGCCAAGTAAACTAGGCTTAAACTTTCACTAGGTGCCTA-CTAAGTTAGGCTTAAACTTTTC
66 AGGTGCCAAGTAAACTAGGCTTAAACTTTCACTAGGTGCCTAGGTAAACTAGGCTTAAACTTTTC
12839884 ATCAA
131 ATCAA
* * * *
12839889 GTGCTAGGTAAACTGGGCTTAAAATTTTCATTAGGTGCTAACTAAGCTAGGCTTAGAAC-TTCAT
1 GTGCTAGGTAAACTAGGCTTAAAATTTTCATTAGGTGCCAACTAAACTGGGCTTA-AACTTTCAT
* ** * * *
12839953 TA-GTGCC-AGATAAAATAGGGCTTAAAATCTTTCTTTAGATG-CTAAGTAAACTAGACTTAAAC
65 TAGGTGCCAAG-TAAACTA-GGCTT-AAA-CTTTCACTAGGTGCCTAGGTAAACTAGGCTTAAAC
* **
12840015 -TATCATTGA
126 TTTTCATCAA
** * * * * *
12840024 -TG-TCAAATAAATTAGGCTTAACATCTTTCTTTA-GTGCCAAATAAACTGGGCTTAAAATTTCA
1 GTGCT-AGGTAAACTAGGCTTAAAAT-TTTCATTAGGTGCCAACTAAACTGGGCTTAAACTTTCA
* * ** * * * *
12840086 TTAGATGCCAACTACGCTGGGCTTAAACTTTGACT-GGTGCC-AGGTAAAACTAAGCTTAAAATT
64 TTAGGTGCCAAGTAAACTAGGCTTAAACTTTCACTAGGTGCCTAGGT-AAACTAGGCTTAAACTT
*
12840149 TTTATCAA
128 TTCATCAA
* * * ** * *
12840157 GTGCTACGTAAACTATGCTTAAAATCTTCATTAGGTGCCAGGTCAATTGGGCTTAAACTTTCATT
1 GTGCTAGGTAAACTAGGCTTAAAATTTTCATTAGGTGCCAACTAAACTGGGCTTAAACTTTCATT
12840222 -GGTGC
66 AGGTGC
12840227 TAGCTAAGCC
Statistics
Matches: 461, Mismatches: 114, Indels: 62
0.72 0.18 0.10
Matches are distributed among these distances:
131 15 0.03
132 60 0.13
133 88 0.19
134 194 0.42
135 68 0.15
136 35 0.08
137 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (135 bp):
GTGCTAGGTAAACTAGGCTTAAAATTTTCATTAGGTGCCAACTAAACTGGGCTTAAACTTTCATT
AGGTGCCAAGTAAACTAGGCTTAAACTTTCACTAGGTGCCTAGGTAAACTAGGCTTAAACTTTTC
ATCAA
Found at i:12839977 original size:101 final size:100
Alignment explanation
Indices: 12839731--12840447 Score: 312
Period size: 100 Copynumber: 7.2 Consensus size: 100
12839721 TGTTGCCAGA
* * * * *
12839731 TAAACTAGGCTTAAACTTTCACT-GGTG-TTAGGTAAACTAGGTTTAAAATTTTCATCAGGTGCC
1 TAAACTAGGCTTAAACTTTCACTAGGTGCCTA-ATAAAATAGGCTTAAAATTTTCATCAAGTGCC
* * *
12839794 ATGTAAATTGGGCTTAAACTTTCATTAGGTGCCAAG
65 AGGTAAACTGGGCTTAAACTTTCATTAGGTGCCAAC
* ** * *
12839830 TAAACTAGGCTTAAACTTTCACTAGGTGCCTACTAAGTTAGGCTTAAACTTTTCATCAAGTGCTA
1 TAAACTAGGCTTAAACTTTCACTAGGTGCCTAATAAAATAGGCTTAAAATTTTCATCAAGTGCCA
* *
12839895 GGTAAACTGGGCTTAAAATTTTCATTAGGTGCTAAC
66 GGTAAACTGGGCTT-AAACTTTCATTAGGTGCCAAC
* * **
12839931 TAAGCTAGGCTTAGAAC-TTCATTA-GTGCC-AGATAAAATAGGGCTTAAAATCTTTC-TTTAGA
1 TAAACTAGGCTTA-AACTTTCACTAGGTGCCTA-ATAAAATA-GGCTTAAAAT-TTTCATCAAG-
* * * * * * * *
12839992 TGCTAAGTAAACTAGACTTAAACTATCATT-GATGTCAAA
61 TGCCAGGTAAACTGGGCTTAAACTTTCATTAGGTGCCAAC
* ** * * * *
12840031 TAAATTAGGCTTAACATCTTTCTTTA-GTGCCAAATAAACTGGGCTTAAAA-TTTCAT-TAGATG
1 TAAACTAGGCTTAA-A-CTTTCACTAGGTGCCTAATAAAATAGGCTTAAAATTTTCATCAAG-TG
** ** * * **
12840093 CCAACTACGCTGGGCTTAAACTTTGACT-GGTGCCAGG
63 CCAGGTAAACTGGGCTTAAACTTTCATTAGGTGCCAAC
* * * * * * * * * *
12840130 TAAAACTAAGCTTAAAATTTTTA-TCAAGTG-CTACGTAAACTATGCTTAAAATCTTCATTAGGT
1 T-AAACTAGGCTT-AAACTTTCACT-AGGTGCCTA-ATAAAATAGGCTTAAAATTTTCATCAAGT
* * * *
12840193 GCCAGGTCAATTGGGCTTAAACTTTCATT-GGTGCTAGC
62 GCCAGGTAAACTGGGCTTAAACTTTCATTAGGTGCCAAC
* * * * * * **
12840231 TAAGC-CGAGTTTAAACTTTCA-TTGGTG-CTAGATAAACTGGGCTTAAAA-TTTCA-CTGGGTG
1 TAAACTAG-GCTTAAACTTTCACTAGGTGCCTA-ATAAAATAGGCTTAAAATTTTCATC-AAGTG
** ** * * * **
12840291 CCAACTAAGTTAGGCTTAAACTTTCACTA-GTGCTAGG
63 CCAGGTAAACTGGGCTTAAACTTTCATTAGGTGCCAAC
* * * * * * *
12840328 TAAAACTAAGCTTAAAATTCTCATTAGGTGCC-AAGTAAACTGGGCTT-AAACTTTCATTAA-TG
1 T-AAACTAGGCTTAAACTT-TCACTAGGTGCCTAA-TAAAATAGGCTTAAAATTTTCATCAAGTG
* * * *
12840390 CCAAGTAAACTGGGCTTAAAATTTCATTGGGTGCTAAC
63 CCAGGTAAACTGGGCTTAAACTTTCATTAGGTGCCAAC
* *
12840428 TAAGCTGGGCTTAAA-TTTCA
1 TAAACTAGGCTTAAACTTTCA
12840448 TTAGCACTAG
Statistics
Matches: 473, Mismatches: 113, Indels: 66
0.73 0.17 0.10
Matches are distributed among these distances:
97 41 0.09
98 34 0.07
99 116 0.25
100 133 0.28
101 107 0.23
102 41 0.09
103 1 0.00
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (100 bp):
TAAACTAGGCTTAAACTTTCACTAGGTGCCTAATAAAATAGGCTTAAAATTTTCATCAAGTGCCA
GGTAAACTGGGCTTAAACTTTCATTAGGTGCCAAC
Found at i:12840021 original size:68 final size:67
Alignment explanation
Indices: 12839903--12840096 Score: 207
Period size: 67 Copynumber: 2.9 Consensus size: 67
12839893 TAGGTAAACT
* * * *
12839903 GGGCTTAAAAT-TTTCATTAGGTGCTAACTAAGCTAGGCTTAGAACTTCATTAG-TGCCAGATAA
1 GGGCTTAAAATCTTTCTTTA-GTGCTAAATAAACTAGGCTTA-AACTTCATTAGATGCCAAATAA
12839966 AATA
64 AATA
* * *
12839970 GGGCTTAAAATCTTTCTTTAGATGCTAAGTAAACTAGACTTAAACTATCATT-GATGTCAAATAA
1 GGGCTTAAAATCTTTCTTTAG-TGCTAAATAAACTAGGCTTAAACT-TCATTAGATGCCAAATAA
*
12840034 ATTA
64 AATA
* * * *
12840038 -GGCTTAACATCTTTCTTTAGTGCCAAATAAACTGGGCTTAAAATTTCATTAGATGCCAA
1 GGGCTTAAAATCTTTCTTTAGTGCTAAATAAACTAGGCTT-AAACTTCATTAGATGCCAA
12840097 CTACGCTGGG
Statistics
Matches: 107, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
66 20 0.19
67 47 0.44
68 40 0.37
ACGTcount: A:0.35, C:0.15, G:0.16, T:0.34
Consensus pattern (67 bp):
GGGCTTAAAATCTTTCTTTAGTGCTAAATAAACTAGGCTTAAACTTCATTAGATGCCAAATAAAA
TA
Found at i:12840076 original size:268 final size:270
Alignment explanation
Indices: 12839496--12840196 Score: 726
Period size: 268 Copynumber: 2.6 Consensus size: 270
12839486 AGGTGCCAGG
* * * * * * *
12839496 TAAACTGGGCTTAACATTTTTCTTTGGTGCCAGATTAACTGGGATTAAAATTTCGTTAAGTGCCA
1 TAAACTAGGCTTAACA-TTTTCTTTAGTGCCAAATAAACTGGGCTTAAAATTTCATTAGGTGCCA
* * *
12839561 AATAAGTTGGGCTTAAACTTTCACTA-GTG-CTAGGTAAAATTAGGCTT-AATTTTTTGTCAAGT
65 AATAAGCTGGGCTTAAACTTTCACTAGGTGCCTAGGTAAAATTAGGCTTAAAATTTTTATCAAGT
* * **
12839623 GCTAGGTAAACTAGGCTTAAAA-TTTCATTGGGTGCCAACTAAGCTGGGCTTAAAATCTTTTTTT
130 GCTAGGTAAACTAGGCTTAAAATTTTCATTAGGTGCCAACTAAGCTAGGCTTAAAATCTTTCATT
* * * * * * *
12839687 GGGTGCCAAGTAAACTAGGAATAACATATTTCGTTGTTGCCAGATAAACTAGGCTTAAACTTTCA
195 GAGTGCCAAGTAAAATAGGAATAAAATATTTCGTTGATGCAAGATAAACTAGACTTAAACTATCA
* * **
12839752 CTGGTGTTAGG
260 CTGATGTCAAA
* * * * ** * *
12839763 TAAACTAGGTTTAAAATTTTCATCAGGTGCCATGTAAATTGGGCTTAAACTTTCATTAGGTGCCA
1 TAAACTAGGCTTAACATTTTCTTTA-GTGCCAAATAAACTGGGCTTAAAATTTCATTAGGTGCCA
* * * * * * *
12839828 AGTAAACTAGGCTTAAACTTTCACTAGGTGCCTA-CT-AAGTTAGGCTTAAACTTTTCATCAAGT
65 AATAAGCTGGGCTTAAACTTTCACTAGGTGCCTAGGTAAAATTAGGCTTAAAATTTTTATCAAGT
* * *
12839891 GCTAGGTAAACTGGGCTTAAAATTTTCATTAGGTGCTAACTAAGCTAGGCTTAGAA-C-TTCATT
130 GCTAGGTAAACTAGGCTTAAAATTTTCATTAGGTGCCAACTAAGCTAGGCTTAAAATCTTTCATT
** * *
12839954 -AGTGCC-AGATAAAATAGGGCTTAAAATCTTTCTTTAGATGCTAAG-TAAACTAGACTTAAACT
195 GAGTGCCAAG-TAAAATA-GGAATAAAATATTTCGTT-GATGC-AAGATAAACTAGACTTAAACT
*
12840016 ATCATTGATGTCAAA
256 ATCACTGATGTCAAA
* *
12840031 TAAATTAGGCTTAACATCTTTCTTTAGTGCCAAATAAACTGGGCTTAAAATTTCATTAGATGCCA
1 TAAACTAGGCTTAACAT-TTTCTTTAGTGCCAAATAAACTGGGCTTAAAATTTCATTAGGTGCCA
* * * * *
12840096 ACTACGCTGGGCTTAAACTTTGACT-GGTGCC-AGGTAAAACTAAGCTTAAAATTTTTATCAAGT
65 AATAAGCTGGGCTTAAACTTTCACTAGGTGCCTAGGTAAAATTAGGCTTAAAATTTTTATCAAGT
* * *
12840159 GCTACGTAAACTATGCTTAAAATCTTCATTAGGTGCCA
130 GCTAGGTAAACTAGGCTTAAAATTTTCATTAGGTGCCA
12840197 GGTCAATTGG
Statistics
Matches: 350, Mismatches: 72, Indels: 23
0.79 0.16 0.05
Matches are distributed among these distances:
265 2 0.01
266 18 0.05
267 100 0.29
268 190 0.54
269 40 0.11
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (270 bp):
TAAACTAGGCTTAACATTTTCTTTAGTGCCAAATAAACTGGGCTTAAAATTTCATTAGGTGCCAA
ATAAGCTGGGCTTAAACTTTCACTAGGTGCCTAGGTAAAATTAGGCTTAAAATTTTTATCAAGTG
CTAGGTAAACTAGGCTTAAAATTTTCATTAGGTGCCAACTAAGCTAGGCTTAAAATCTTTCATTG
AGTGCCAAGTAAAATAGGAATAAAATATTTCGTTGATGCAAGATAAACTAGACTTAAACTATCAC
TGATGTCAAA
Found at i:12840310 original size:65 final size:66
Alignment explanation
Indices: 12840038--12840473 Score: 312
Period size: 65 Copynumber: 6.6 Consensus size: 66
12840028 AAATAAATTA
* * * * * *
12840038 GGCTTAACATCTTTCTTTAGTGCCAAAT-AAACTGGGCTTAAAATTTCATTAGATGCCAACTACG
1 GGCTTAA-A-CTTTCATTAGTGCTAGATAAAACTGGGCTTAAAATTTCATTGGGTGCCAACTAAG
12840102 CTG
64 CTG
* * * * * ** * *** * *
12840105 GGCTTAAACTTTGACTGGTGCCAGGTAAAACTAAGCTTAAAATTTTTATCAAGTG-CTACGTAAA
1 GGCTTAAACTTTCATTAGTGCTAGATAAAACTGGGCTTAAAA-TTTCATTGGGTGCCAAC-TAAG
*
12840169 CTA
64 CTG
* * * * * * * * *
12840172 TGCTTAAAATCTTCATTAGGTGCCAGGT-CAATTGGGCTTAAACTTTCATT-GGTGCTAGCTAAG
1 GGCTTAAACT-TTCATTA-GTGCTAGATAAAACTGGGCTTAAAATTTCATTGGGTGCCAACTAAG
*
12840235 CCG
64 CTG
* * * * *
12840238 AGTTTAAACTTTCATTGGTGCTAGAT-AAACTGGGCTTAAAATTTCACTGGGTGCCAACTAAGTT
1 GGCTTAAACTTTCATTAGTGCTAGATAAAACTGGGCTTAAAATTTCATTGGGTGCCAACTAAGCT
*
12840302 A
66 G
* * ** * * *
12840303 GGCTTAAACTTTCACTAGTGCTAGGTAAAACTAAGCTTAAAATTCTCATTAGGTGCCAAGTAAAC
1 GGCTTAAACTTTCATTAGTGCTAGATAAAACTGGGCTTAAAATT-TCATTGGGTGCCAACTAAGC
12840368 TG
65 TG
* * *
12840370 GGCTTAAACTTTCATTAATGCCA-AGT-AAACTGGGCTTAAAATTTCATTGGGTGCTAACTAAGC
1 GGCTTAAACTTTCATTAGTGCTAGA-TAAAACTGGGCTTAAAATTTCATTGGGTGCCAACTAAGC
12840433 TG
65 TG
**
12840435 GGCTTAAA-TTTCATTAGCACTAGATAAAACTGGGCTTAA
1 GGCTTAAACTTTCATTAGTGCTAGATAAAACTGGGCTTAA
12840474 CTTTTTGTGT
Statistics
Matches: 280, Mismatches: 77, Indels: 26
0.73 0.20 0.07
Matches are distributed among these distances:
64 36 0.13
65 90 0.32
66 61 0.22
67 70 0.25
68 14 0.05
69 9 0.03
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (66 bp):
GGCTTAAACTTTCATTAGTGCTAGATAAAACTGGGCTTAAAATTTCATTGGGTGCCAACTAAGCT
G
Found at i:12840375 original size:34 final size:33
Alignment explanation
Indices: 12839000--12840451 Score: 604
Period size: 33 Copynumber: 43.7 Consensus size: 33
12838990 GTGCCAGTTT
*
12839000 AACTGGGCTTAAAATTTCATTAGGGGCC-AGATA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAG-TA
** *
12839033 AACTAAGCTTAAAATTTTCATTAAGG-GCCATA-TC
1 AACTGGGCTTAAAA-TTTCATT-AGGTGCCA-AGTA
* * * *
12839067 AACTGGGCTTAAAATTTCATCGAAG-GCTAAATA
1 AACTGGGCTTAAAATTTCAT-TAGGTGCCAAGTA
* *
12839100 AACTAGG-TTTAAA----ATTAGGTG--ATAGCTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCA-AG-TA
* * * *
12839128 AACTAGGCTTAAACTTTCACTT--GT-ACTAGCTA
1 AACTGGGCTTAAAATTTCA-TTAGGTGCCAAG-TA
* ** *
12839160 AATTGGGCTTAAAATCTTTTTTTGGTGCC-AGATA
1 AACTGGGCTTAAAAT-TTCATTAGGTGCCAAG-TA
* * *
12839194 AATTGGGCTTAAAATTTCATTTGGTGCCAACTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
* * * *
12839227 AGCTGGGCTTTAAAATCATCATCAGGTGTCAAGTA
1 AACTGGGC-TTAAAAT-TTCATTAGGTGCCAAGTA
* * * *
12839262 AACTAGGCTTAAAATCTTTCTTTA-GTACCAAATA
1 AACTGGGCTTAAAA--TTTCATTAGGTGCCAAGTA
* *
12839296 AACTGGGCTTAAAATCTCTC-TTAGCTGTCAAGTA
1 AACTGGGCTTAAAAT-T-TCATTAGGTGCCAAGTA
** *
12839330 AACTACGCTTAAAATTTCCATTAGGTGCTAAGTA
1 AACTGGGCTTAAAATTT-CATTAGGTGCCAAGTA
* * *
12839364 AACTGGGCTTAAACTTTCATT-GATGCCAGGTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
** * * *
12839396 AACTATGCTTAAAATATTTCTTTA-ATGCCAAATA
1 AACTGGGCTT-AAA-ATTTCATTAGGTGCCAAGTA
* * * *
12839430 AATTGGGCTTAAAATTTTATTGGGTG-CTAGCTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAG-TA
** * *
12839463 AGTTGGGCTTAAAATCTCTCTTTAGGTGCCAGGTA
1 AACTGGGCTTAAAAT-T-TCATTAGGTGCCAAGTA
* * *
12839498 AACTGGGCTTAACATTTTTC-TTTGGTGCC-AGATT
1 AACTGGGCTTAA-A-ATTTCATTAGGTGCCAAG-TA
* * * *
12839532 AACTGGGATTAAAATTTCGTTAAGTGCCAAATA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
** * * * *
12839565 AGTTGGGCTTAAACTTTCACTA-GTGCTAGGTAA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGT-A
* * ** ** * * * *
12839598 AATTAGGCTTAATTTTTTGTCAAGTGCTAGGTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
* * *
12839631 AACTAGGCTTAAAATTTCATTGGGTGCCAACTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
* ** *
12839664 AGCTGGGCTTAAAATCTTTTTTTGGGTGCCAAGTA
1 AACTGGGCTTAAAA--TTTCATTAGGTGCCAAGTA
* ** * *
12839699 AACTAGGAATAACATATTTCGTT-GTTGCC-AGATA
1 AACTGGGCTTAA-A-ATTTCATTAGGTGCCAAG-TA
* * * ** *
12839733 AACTAGGCTTAAACTTTCACT-GGTGTTAGGTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
* * * *
12839765 AACTAGGTTTAAAATTTTCATCAGGTGCCATGTA
1 AACTGGGCTTAAAA-TTTCATTAGGTGCCAAGTA
* *
12839799 AATTGGGCTTAAACTTTCATTAGGTGCCAAGTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
* * * * *
12839832 AACTAGGCTTAAACTTTCACTAGGTGCCTACTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
** * * * * * *
12839865 AGTTAGGCTTAAACTTTTCATCAAGTGCTAGGTA
1 AACTGGGCTTAAA-ATTTCATTAGGTGCCAAGTA
* *
12839899 AACTGGGCTTAAAATTTTCATTAGGTGCTAACTA
1 AACTGGGCTTAAAA-TTTCATTAGGTGCCAAGTA
* * * *
12839933 AGCTAGGCTTAGAACTTCATTA-GTGCC-AGATA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAG-TA
* * * *
12839965 AAATAGGGCTTAAAATCTTTCTTTAGATGCTAAGTA
1 AACT-GGGCTTAAAA--TTTCATTAGGTGCCAAGTA
* * * * * * *
12840001 AACTAGACTTAAACTATCATT-GATGTCAAATA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
* * * * *
12840033 AATTAGGCTTAACATCTTTCTTTA-GTGCCAAATA
1 AACTGGGCTTAA-A-ATTTCATTAGGTGCCAAGTA
* *
12840067 AACTGGGCTTAAAATTTCATTAGATGCCAACTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
** * * * *
12840100 CGCTGGGCTTAAACTTTGACT-GGTGCCAGGTAA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGT-A
** * * * * *
12840133 AACTAAGCTTAAAATTTTTATCAAGTGCTACGTA
1 AACTGGGCTTAAAA-TTTCATTAGGTGCCAAGTA
** * *
12840167 AACTATGCTTAAAATCTTCATTAGGTGCCAGGTC
1 AACTGGGCTTAAAAT-TTCATTAGGTGCCAAGTA
* * *
12840201 AATTGGGCTTAAACTTTCATT-GGTG-CTAGCTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAG-TA
* * * * * *
12840233 AGCCGAGTTTAAACTTTCATT-GGTG-CTAGATA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAG-TA
* * *
12840265 AACTGGGCTTAAAATTTCACTGGGTGCCAACTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
** * * * * *
12840298 AGTTAGGCTTAAACTTTCACTA-GTGCTAGGTAA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGT-A
**
12840331 AACTAAGCTTAAAATTCTCATTAGGTGCCAAGTA
1 AACTGGGCTTAAAATT-TCATTAGGTGCCAAGTA
* *
12840365 AACTGGGCTTAAACTTTCATTA-ATGCCAAGTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
* * *
12840397 AACTGGGCTTAAAATTTCATTGGGTGCTAACTA
1 AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
*
12840430 AGCTGGGCTT-AAATTTCATTAG
1 AACTGGGCTTAAAATTTCATTAG
12840452 CACTAGATAA
Statistics
Matches: 1058, Mismatches: 284, Indels: 155
0.71 0.19 0.10
Matches are distributed among these distances:
26 1 0.00
27 3 0.00
28 12 0.01
29 4 0.00
31 3 0.00
32 217 0.21
33 348 0.33
34 347 0.33
35 104 0.10
36 15 0.01
37 4 0.00
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34
Consensus pattern (33 bp):
AACTGGGCTTAAAATTTCATTAGGTGCCAAGTA
Found at i:12840677 original size:22 final size:22
Alignment explanation
Indices: 12840652--12840722 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 22
12840642 GCTAATCCAA
12840652 GCTTATATGCCAACTAATCTGG
1 GCTTATATGCCAACTAATCTGG
* * * *
12840674 GCTTATGTGCCTACTAAACTGA
1 GCTTATATGCCAACTAATCTGG
* * * * *
12840696 GCTCATTTGCTAGCTAATTTGG
1 GCTTATATGCCAACTAATCTGG
12840718 GCTTA
1 GCTTA
12840723 AATCTCATTG
Statistics
Matches: 36, Mismatches: 13, Indels: 0
0.73 0.27 0.00
Matches are distributed among these distances:
22 36 1.00
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (22 bp):
GCTTATATGCCAACTAATCTGG
Found at i:12840852 original size:85 final size:85
Alignment explanation
Indices: 12840715--12840870 Score: 213
Period size: 85 Copynumber: 1.8 Consensus size: 85
12840705 CTAGCTAATT
* * * * * *
12840715 TGGGCTTAAATCTCATTGATGCCAGATAATCTGAGCTTAAGACTTTACTGGTGCTAGATAATATA
1 TGGGCTAAAATCTCATTGATGCCAGATAATATGAGCTTAAAACTTCACTGGTGCCAAATAATATA
12840780 GGCTTACATGTCAGCTATAC
66 GGCTTACATGTCAGCTATAC
* * * * *
12840800 TGGGCTAAAATCTTATTGATGCTAGATAATATGGGCTTAAAACTTCATTGGTGCCAAATAATCTA
1 TGGGCTAAAATCTCATTGATGCCAGATAATATGAGCTTAAAACTTCACTGGTGCCAAATAATATA
12840865 GGCTTA
66 GGCTTA
12840871 AGACTTTATT
Statistics
Matches: 60, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
85 60 1.00
ACGTcount: A:0.31, C:0.16, G:0.20, T:0.33
Consensus pattern (85 bp):
TGGGCTAAAATCTCATTGATGCCAGATAATATGAGCTTAAAACTTCACTGGTGCCAAATAATATA
GGCTTACATGTCAGCTATAC
Found at i:12840861 original size:32 final size:31
Alignment explanation
Indices: 12840799--12840910 Score: 118
Period size: 32 Copynumber: 3.5 Consensus size: 31
12840789 GTCAGCTATA
*
12840799 CTGGGC-TAAAATCTTATTGATGCTAGATAAT
1 CTGGGCTTAAAA-CTTATTGGTGCTAGATAAT
* * *
12840830 ATGGGCTTAAAACTTCATTGGTGCCAAATAAT
1 CTGGGCTTAAAACTT-ATTGGTGCTAGATAAT
* *
12840862 CTAGGCTTAAGACTTTATTGGTGCTAGATAAT
1 CTGGGCTTAAAAC-TTATTGGTGCTAGATAAT
* *
12840894 CTGAGCTTAAGACTTAT
1 CTGGGCTTAAAACTTAT
12840911 GTACCAGTTA
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
31 12 0.18
32 53 0.79
33 2 0.03
ACGTcount: A:0.31, C:0.14, G:0.20, T:0.35
Consensus pattern (31 bp):
CTGGGCTTAAAACTTATTGGTGCTAGATAAT
Found at i:12850342 original size:143 final size:143
Alignment explanation
Indices: 12849696--12850365 Score: 754
Period size: 144 Copynumber: 4.7 Consensus size: 143
12849686 TTATTTTTCA
* * * * *
12849696 GATTTTAAA-GCACCAAAAATCATGAAATGTTATAAAATTGAGATATGAAAAGTTTCATGAAAAT
1 GATTTCAAATGCACAAAAAATCATGAAATATTATAAAATTGAGATCTAAAAAGTTTCA-GAAAAT
* * * *
12849760 CTGAGCTCGAGAAGGCCAAATTATGAAAATATCC--ATAATGGGTATTTTGGTAATTTCACACCT
65 CTGAGCTCAAGAAGGCCAAATTATAAAAATACCCTTATAA-GGATATTTTGGTAATTTCACA-CT
* *
12849823 TCCA-AGCTACTGT-TGT
128 TTCAGAGGTA-T-TCTGT
* * * * *
12849839 GATTTCAAATGCACAAAAAAACATGTAGTATTATTAAATTGAGATCTAAAATGTTTCATGAAAAT
1 GATTTCAAATGCACAAAAAATCATGAAATATTATAAAATTGAGATCTAAAAAGTTTCA-GAAAAT
* * *
12849904 CTGAGCTCATGAAGGCCAAATTACAAAAATACCTTTATAAGGATATTTTGGTAATTTCACACTTT
65 CTGAGCTCAAGAAGGCCAAATTATAAAAATACCCTTATAAGGATATTTTGGTAATTTCACACTTT
12849969 CAGAGGTATTCTGT
130 CAGAGGTATTCTGT
* * *
12849983 GATTTCAAATGCACCAAAAAA-CATGAAATATTATTAAATTGAGATCTAAAATGTTTCATAAAAA
1 GATTTCAAATGCA-CAAAAAATCATGAAATATTATAAAATTGAGATCTAAAAAGTTTCA-GAAAA
* *
12850047 TCTGAGCTCATGAAGGCCAAATTATAAAAATACCTTTATAAGGATATTTTGGTAATTTCACACTT
64 TCTGAGCTCAAGAAGGCCAAATTATAAAAATACCCTTATAAGGATATTTTGGTAATTTCACACTT
*
12850112 TCAGAGGTATTCCGT
129 TCAGAGGTATTCTGT
** * * *
12850127 GATTTCAAATGCACAAAAAATTGTGAAATATTATAAAATTGAGATTTGAAAAGTTTCATAAGAAT
1 GATTTCAAATGCACAAAAAATCATGAAATATTATAAAATTGAGATCTAAAAAGTTTCAGAA-AAT
* * * *
12850192 CTAAGCTCAAAAAGGCCAAATTATGAAAATACCCTTATAAAGG-TATTTTAGT-A-TTCACACTT
65 CTGAGCTCAAGAAGGCCAAATTATAAAAATACCCTTAT-AAGGATATTTTGGTAATTTCACACTT
** *
12850254 TTTGGGGTACTAT-TGT
129 TCAGAGGTA-T-TCTGT
* * *
12850270 GATTTCAAATACACAAAAAATCTTGAAATATTATAAAATTGAGATCTAAAAAGTTTCACAAAA-C
1 GATTTCAAATGCACAAAAAATCATGAAATATTATAAAATTGAGATCTAAAAAGTTTCAGAAAATC
12850334 TTCGAGCTCAAG-AGGCCAAATTA-AAAATATAC
66 -T-GAGCTCAAGAAGGCCAAATTATAAAA-ATAC
12850366 ACCCTAAAGG
Statistics
Matches: 463, Mismatches: 50, Indels: 29
0.85 0.09 0.05
Matches are distributed among these distances:
141 4 0.01
142 33 0.07
143 84 0.18
144 303 0.65
145 35 0.08
146 4 0.01
ACGTcount: A:0.41, C:0.13, G:0.14, T:0.32
Consensus pattern (143 bp):
GATTTCAAATGCACAAAAAATCATGAAATATTATAAAATTGAGATCTAAAAAGTTTCAGAAAATC
TGAGCTCAAGAAGGCCAAATTATAAAAATACCCTTATAAGGATATTTTGGTAATTTCACACTTTC
AGAGGTATTCTGT
Found at i:12867820 original size:129 final size:129
Alignment explanation
Indices: 12867631--12868428 Score: 712
Period size: 129 Copynumber: 6.2 Consensus size: 129
12867621 AAAAATAAAC
* * * * * * * * *
12867631 AGAAGGGTATTTTTGTAATAATGGCATAAGGGTATAATAGTCCATTTAGCCGCATGTCAATTTCT
1 AGAATGGTATTTTTATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCT
* * ** * *
12867696 TATCATATAATAGAAATGGTATTTTCTTAATTTCAT-AGGGATTTTTTAGTAAATAATTGTAAG
66 TATCATATAATGGAAAGGGTATTTTGATAATTTCATAAGGGATTATTTAGTAAATAATTATAAG
* * * * * * **
12867759 AGAATGTGTATTTTTATAATTATGGCATCAAGGCATAATAATCTATTTGGCTACACATCAATTTC
1 AGAATG-GTATTTTTATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTC
* * * * * * *
12867824 TTCTCATTTAATAGAAAGGGCATTTTGGA-AATTTCATAAAGGATTATTTACTAAATAACTATAA
65 TTATCATATAATGGAAAGGGTATTTT-GATAATTTCATAAGGGATTATTTAGTAAATAATTATAA
12867888 G
129 G
* * * * * * *
12867889 AGAAAGGTATTTTTGTAATTATAGTATGAGGGCATAATAGTCAATTCGACCAAAGGTCAATTTCT
1 AGAATGGTATTTTTATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCT
* *
12867954 TATCATATAATGGATA-GGTATTTTGATAATTTCATAAGGGATTATTTAGTAAGTAATTATAAG
66 TATCATATAATGGAAAGGGTATTTTGATAATTTCATAAGGGATTATTTAGTAAATAATTATAAG
* * * * * *
12868017 AAAAT-GAATGTTTTCATAATTATGATATTG-GAGCAGAATTGTCAATTTGGCCACATGTCAATT
1 AGAATGGTAT-TTTT-ATAATTATGGTA-TGAGGGCATAATAGTCAATTTGGCCACATGTCAATT
** * * * * * * *
12868080 TCTTATTGTATAATGGAAAAGGGCATTTTGTTAATTTCCTAGGGGATTATTTAGCACATAATTTT
63 TCTTATCATATAATGG-AAAGGGTATTTTGATAATTTCATAAGGGATTATTTAGTAAATAATTAT
12868145 AAG
127 AAG
* * * **
12868148 AG-ATGAAGTAATTTTGTAATTATGGTATGAGGGCATAATAGTCCATTTAACCACATGTCAATTT
1 AGAATG--GTATTTTTATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTT
* * * * * **
12868212 ATTATCATATAATGGAAAGGGTATTTTCATAACTTT-TTAAGGAATTATTTGGTAAATAAGCATA
64 CTTATCATATAATGGAAAGGGTATTTTGATAA-TTTCATAAGGGATTATTTAGTAAATAATTATA
12868276 AG
128 AG
* * * ** * *
12868278 AGAATGGGTATTTTCATAATTATGGCATGAAGGCATAATAGTTC-ATTCAGCTACATGCCAATTT
1 AGAAT-GGTATTTTTATAATTATGGTATGAGGGCATAATAG-TCAATTTGGCCACATGTCAATTT
* * * * *
12868342 CTTATCATATAATGGAAAAGATATTTTGGTAATTTCATAAAGGAGTATTTAGTAAATAATTATAA
64 CTTATCATATAATGGAAAGGGTATTTTGATAATTTCATAAGGGATTATTTAGTAAATAATTAT-A
*
12868407 AA
128 AG
*
12868409 AGAATGGTATTTTTGTAATT
1 AGAATGGTATTTTTATAATT
12868429 GTATAATGGA
Statistics
Matches: 530, Mismatches: 121, Indels: 36
0.77 0.18 0.05
Matches are distributed among these distances:
127 5 0.01
128 51 0.10
129 186 0.35
130 177 0.33
131 104 0.20
132 5 0.01
133 2 0.00
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (129 bp):
AGAATGGTATTTTTATAATTATGGTATGAGGGCATAATAGTCAATTTGGCCACATGTCAATTTCT
TATCATATAATGGAAAGGGTATTTTGATAATTTCATAAGGGATTATTTAGTAAATAATTATAAG
Found at i:12868301 original size:130 final size:130
Alignment explanation
Indices: 12867631--12868428 Score: 689
Period size: 130 Copynumber: 6.2 Consensus size: 130
12867621 AAAAATAAAC
* * * * *
12867631 AGAA-GGGTATTTTTGTAATAATGGCATAAGGGTATAATAGTCCATTTAGCCGCATGTCAATTTC
1 AGAATGGGTATTTTTATAATTATGGCATGAGGGCATAATAGTCCATTTAGCCACATGTCAATTTC
* * ** * * *
12867695 TTATCATATAATAGAAATGGTATTTTCTTAATTTCAT-AGGGATTTTTTAGTAAATAATTGTAAG
66 TTATCATATAATGGAAAGGGTATTTTGATAATTTCTTAAGGGATTATTTAGTAAATAATTATAAG
* * * * * * * **
12867759 AGAATGTGTATTTTTATAATTATGGCATCAAGGCATAATAATCTATTTGGCTACACATCAATTTC
1 AGAATGGGTATTTTTATAATTATGGCATGAGGGCATAATAGTCCATTTAGCCACATGTCAATTTC
* * * * * * * *
12867824 TTCTCATTTAATAGAAAGGGCATTTTGGA-AATTTCATAAAGGATTATTTACTAAATAACTATAA
66 TTATCATATAATGGAAAGGGTATTTT-GATAATTTCTTAAGGGATTATTTAGTAAATAATTATAA
12867888 G
130 G
* * * * * * * *
12867889 AGAA-AGGTATTTTTGTAATTATAGTATGAGGGCATAATAGT-CAATTCGACCAAAGGTCAATTT
1 AGAATGGGTATTTTTATAATTATGGCATGAGGGCATAATAGTCCATTTAG-CCACATGTCAATTT
* * *
12867952 CTTATCATATAATGGATA-GGTATTTTGATAATTTCATAAGGGATTATTTAGTAAGTAATTATAA
65 CTTATCATATAATGGAAAGGGTATTTTGATAATTTCTTAAGGGATTATTTAGTAAATAATTATAA
12868016 G
130 G
* ** * * ** * * * * *
12868017 AAAATGAATGTTTTCATAATTATGATATTG-GAGCAGAATTGTCAATTTGGCCACATGTCAATTT
1 AGAATGGGTATTTTTATAATTATGGCA-TGAGGGCATAATAGTCCATTTAGCCACATGTCAATTT
** * * * * * * *
12868081 CTTATTGTATAATGGAAAAGGGCATTTTGTTAATTTCCTAGGGGATTATTTAGCACATAATTTTA
65 CTTATCATATAATGG-AAAGGGTATTTTGATAATTTCTTAAGGGATTATTTAGTAAATAATTATA
12868146 AG
129 AG
* * * * *
12868148 AG-ATGAAGTAATTTTGTAATTATGGTATGAGGGCATAATAGTCCATTTAACCACATGTCAATTT
1 AGAATG-GGTATTTTTATAATTATGGCATGAGGGCATAATAGTCCATTTAGCCACATGTCAATTT
* * * * **
12868212 ATTATCATATAATGGAAAGGGTATTTTCATAACTTT-TTAAGGAATTATTTGGTAAATAAGCATA
65 CTTATCATATAATGGAAAGGGTATTTTGATAA-TTTCTTAAGGGATTATTTAGTAAATAATTATA
12868276 AG
129 AG
* * * * * *
12868278 AGAATGGGTATTTTCATAATTATGGCATGAAGGCATAATAGTTCATTCAGCTACATGCCAATTTC
1 AGAATGGGTATTTTTATAATTATGGCATGAGGGCATAATAGTCCATTTAGCCACATGTCAATTTC
* * * * * *
12868343 TTATCATATAATGGAAAAGATATTTTGGTAATTTCATAAAGGAGTATTTAGTAAATAATTATAAA
66 TTATCATATAATGGAAAGGGTATTTTGATAATTTCTTAAGGGATTATTTAGTAAATAATTAT-AA
*
12868408 A
130 G
*
12868409 AGAAT-GGTATTTTTGTAATT
1 AGAATGGGTATTTTTATAATT
12868429 GTATAATGGA
Statistics
Matches: 524, Mismatches: 130, Indels: 30
0.77 0.19 0.04
Matches are distributed among these distances:
127 2 0.00
128 50 0.10
129 181 0.35
130 183 0.35
131 108 0.21
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (130 bp):
AGAATGGGTATTTTTATAATTATGGCATGAGGGCATAATAGTCCATTTAGCCACATGTCAATTTC
TTATCATATAATGGAAAGGGTATTTTGATAATTTCTTAAGGGATTATTTAGTAAATAATTATAAG
Found at i:12868449 original size:81 final size:80
Alignment explanation
Indices: 12868349--12868508 Score: 198
Period size: 81 Copynumber: 2.0 Consensus size: 80
12868339 TTTCTTATCA
* *
12868349 TATAATGGAAAAGATATTTTGGTAATTTCAT-AAAGGAGTATTTAGTAAATAATTATAA-AAAGA
1 TATAATGGAAAAGACATTTTAGTAATTTCATGAAA-GAGTATTTAGTAAATAATTATAAGAAA-A
*
12868412 ATGGTATTTTTGTAATTG
64 AGGGTA-TTTTGTAATTG
* * ** * *
12868430 TATAATGGAAAGGGCATTTTAGTAATTTTTTGAAAGATTATTTAGTAAATAGTTATAAGAAAAAG
1 TATAATGGAAAAGACATTTTAGTAATTTCATGAAAGAGTATTTAGTAAATAATTATAAGAAAAAG
12868495 GGTATTTTGTAATT
66 GGTATTTTGTAATT
12868509 ACGATATAAG
Statistics
Matches: 68, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
80 10 0.15
81 52 0.76
82 6 0.09
ACGTcount: A:0.41, C:0.01, G:0.18, T:0.40
Consensus pattern (80 bp):
TATAATGGAAAAGACATTTTAGTAATTTCATGAAAGAGTATTTAGTAAATAATTATAAGAAAAAG
GGTATTTTGTAATTG
Found at i:12868586 original size:129 final size:127
Alignment explanation
Indices: 12868426--12868774 Score: 369
Period size: 129 Copynumber: 2.7 Consensus size: 127
12868416 TATTTTTGTA
*
12868426 ATTGTATAATGGAAAGGGCATTTTAGTAATTTTTTGAAAGATTATTTAGTAAATAGTTATAAGAA
1 ATTGTATAATGGAAAGGGCATTTTGGTAATTTTTT-AAAGATTATTTAGTAAATAGTTATAA-AA
* * ** * *
12868491 AAAGGGTATTTTGTAATTACGATATAAGGGTATAATAGCCCATTTGACCACATGTTAATTTCTT
64 AAAGGGTATTTTATAATTATGATATAAGGCCATAAGAGCCCATTTGACCACATGTCAATTTCTT
* * * ** *
12868555 ATTGTATATTGGACAGGGTATTTTGGTAATTTCATAAAGGATTATTTAATAAATAGTTATAAAAG
1 ATTGTATAATGGAAAGGGCATTTTGGTAATTTTTTAAA-GATTATTTAGTAAATAGTTATAAAA-
* * * * * * **
12868620 AAAGGAT-TTTTCATAACTGTGGTATGAGGCCATAAGAGTCCATTTGGTCACATGTCAATTTCTT
64 AAAGGGTATTTT-ATAATTATGATATAAGGCCATAAGAGCCCATTTGACCACATGTCAATTTCTT
** * * *
12868684 ATCATATAATGAAAAGGGCATTTTGGTAATTTTTTAAGAGATTATTTAGTAAATAATTCTAATAG
1 ATTGTATAATGGAAAGGGCATTTTGGTAATTTTTTAA-AGATTATTTAGTAAATAGTTATAA-A-
12868749 AAAA-GGTATTTCTATAATTATGATAT
63 AAAAGGGTATTT-TATAATTATGATAT
12868775 GAAAACATAA
Statistics
Matches: 176, Mismatches: 36, Indels: 15
0.78 0.16 0.07
Matches are distributed among these distances:
128 9 0.05
129 147 0.84
130 18 0.10
131 2 0.01
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.39
Consensus pattern (127 bp):
ATTGTATAATGGAAAGGGCATTTTGGTAATTTTTTAAAGATTATTTAGTAAATAGTTATAAAAAA
AGGGTATTTTATAATTATGATATAAGGCCATAAGAGCCCATTTGACCACATGTCAATTTCTT
Found at i:12869246 original size:128 final size:129
Alignment explanation
Indices: 12869021--12869313 Score: 338
Period size: 128 Copynumber: 2.3 Consensus size: 129
12869011 GGTATTTTCA
* * ** ** * *
12869021 TAATTTCATAAGGGATTATTTAATAAATAATTATAGGAGA-AAGGTATTTTCATAATTATGGTAA
1 TAATTT-ATAGGGGATTATTTAGTAAATAATTATAAAAGATGGGGCATTTTCATAATTATGATAA
* * * * *
12869085 GAAAGCGTAATTGTCAATTTGACCACATGTCAATTTCCTATCATATAATGGAAAGGGCATTTTGG
65 GAAAGCATAATAGTCAATTTGACAACATATCAATTTCCTATCACATAATGGAAAGGGCATTTTGG
** * *
12869150 TAATTT-TTTGGGATTATTTGGTAAATAATTATAAAAGATGGGGCATTTTCATAATTATGATAGG
1 TAATTTATAGGGGATTATTTAGTAAATAATTATAAAAGATGGGGCATTTTCATAATTATGATAAG
* * * ** * *
12869214 AAGGCATAATAGTCCATTTGGCAACATATCAATTTTTTATCACATAATGGGATGGGCATTTTGG
66 AAAGCATAATAGTCAATTTGACAACATATCAATTTCCTATCACATAATGGAAAGGGCATTTTGG
12869278 TAATTTCATAGGGGATTATTTAGTAAATAATTATAA
1 TAATTT-ATAGGGGATTATTTAGTAAATAATTATAA
12869314 GAGAATAATA
Statistics
Matches: 135, Mismatches: 26, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
127 26 0.19
128 78 0.58
129 6 0.04
130 25 0.19
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (129 bp):
TAATTTATAGGGGATTATTTAGTAAATAATTATAAAAGATGGGGCATTTTCATAATTATGATAAG
AAAGCATAATAGTCAATTTGACAACATATCAATTTCCTATCACATAATGGAAAGGGCATTTTGG
Found at i:12869300 original size:310 final size:310
Alignment explanation
Indices: 12868718--12869334 Score: 697
Period size: 310 Copynumber: 2.0 Consensus size: 310
12868708 GGTAATTTTT
* * * *
12868718 TAAGAGATTATTTAGTAAATAATTCTAATAGAAAAGGTATTTCTATAATTATGATATGAAAACAT
1 TAAGAGATTATTTAATAAATAATTATAAGAGAAAAGGTATTTCTATAATTATGATAAGAAAACAT
* * * *
12868783 AATTGTCAATTGACCATATTTCAACTTTTTATTAAATAACAGAAAGGGCATTTTGATAATTCGTA
66 AATTGTCAATTGACCACATGTCAACTTTCTATCAAATAACAGAAAGGGCATTTTGATAATTCGTA
* * * ** * *
12868848 GGGGATTGTTTAATAAATAATTATAAGAGAAAAGGTATTTTTGTAATTATGGTGTGAGGGCAGAA
131 GGGGATTATTTAATAAATAATTATAAAAGAAAAGGCATTTTCATAATTATGATGTGAAGGCAGAA
* * *
12868913 TAGCACATTTGGCTACATATCAATTTCTTACCATATAATAGAAAGGGCAATTTGATAATTTCGTA
196 TAGCACATTTGGCAACATATCAATTTCTTACCACATAATAGAAAGGGCAATTTGATAATTTCATA
* *
12868978 GCGAAATATTTAGTAAATATTTATAAGAGAAGAGGTATTTTCATAATTTCA
261 GCGAAATATTTAGTAAATAATTATAAGAGAAGA-ATATTTTCATAATTTCA
* * * * *
12869029 TAAGGGATTATTTAATAAATAATTATAGGAG-AAAGGTATTT-TCATAATTATGGTAAGAAAGCG
1 TAAGAGATTATTTAATAAATAATTATAAGAGAAAAGGTATTTCT-ATAATTATGATAAGAAAACA
* ** *
12869092 TAATTGTCAATTTGACCACATGTCAA-TTTCCTATCATATAATGGAAAGGGCATTTTGGTAATT-
65 TAATTGTCAA-TTGACCACATGTCAACTTT-CTATCAAATAACAGAAAGGGCATTTTGATAATTC
* ** ** ***
12869155 TTTTGGGATTATTTGGTAAATAATTATAAAAGATGGGGCATTTTCATAATTATGATAG-GAAGGC
128 GTAGGGGATTATTTAATAAATAATTATAAAAGAAAAGGCATTTTCATAATTATGAT-GTGAAGGC
* * * * * * * *
12869219 ATAATAGTC-CATTTGGCAACATATCAATTTTTTATCACATAATGGGATGGGCATTTTGGTAATT
192 AGAATAG-CACATTTGGCAACATATCAATTTCTTACCACATAATAGAAAGGGCAATTTGATAATT
* * * *
12869283 TCATAGGGGATTATTTAGTAAATAATTATAAGAGAATAATATTTTCATAATT
256 TCATAGCGAAATATTTAGTAAATAATTATAAGAGAAGAATATTTTCATAATT
12869335 ATGGCATGAG
Statistics
Matches: 252, Mismatches: 49, Indels: 12
0.81 0.16 0.04
Matches are distributed among these distances:
309 14 0.06
310 170 0.67
311 68 0.27
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (310 bp):
TAAGAGATTATTTAATAAATAATTATAAGAGAAAAGGTATTTCTATAATTATGATAAGAAAACAT
AATTGTCAATTGACCACATGTCAACTTTCTATCAAATAACAGAAAGGGCATTTTGATAATTCGTA
GGGGATTATTTAATAAATAATTATAAAAGAAAAGGCATTTTCATAATTATGATGTGAAGGCAGAA
TAGCACATTTGGCAACATATCAATTTCTTACCACATAATAGAAAGGGCAATTTGATAATTTCATA
GCGAAATATTTAGTAAATAATTATAAGAGAAGAATATTTTCATAATTTCA
Found at i:12869773 original size:66 final size:66
Alignment explanation
Indices: 12869665--12869796 Score: 212
Period size: 66 Copynumber: 2.0 Consensus size: 66
12869655 TAATTATAAG
* *
12869665 ACAAAGGGTATTTTCATAATTGTGATATGAGAATGTAATAATCTA-TTTAGGCACATATCAATCT
1 ACAAAGGGTATTTTCATAATTGCGATATAAGAATGTAATAATC-AGTTTAGGCACATATCAATCT
12869729 TT
65 TT
* *
12869731 ACAAAGGGTATTTTCATAATTGCGATATAAGAATGTACTAATCAGTTTAGGCACATGTCAATCTT
1 ACAAAGGGTATTTTCATAATTGCGATATAAGAATGTAATAATCAGTTTAGGCACATATCAATCTT
12869796 T
66 T
12869797 TATTGTATAA
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
65 1 0.02
66 60 0.98
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (66 bp):
ACAAAGGGTATTTTCATAATTGCGATATAAGAATGTAATAATCAGTTTAGGCACATATCAATCTT
T
Found at i:12871178 original size:128 final size:124
Alignment explanation
Indices: 12870374--12871367 Score: 368
Period size: 128 Copynumber: 7.8 Consensus size: 124
12870364 GGTATGAAAG
* * ** * * *
12870374 AATAATAGTCAATTTGGTCACATGTCAATTTCTTAGCCCATAATGGAAATGGCATTTTAGGAATT
1 AATAATAGTCCATTTGGTCACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTT-GTAA--
* * * * *
12870439 TCTTGAAG-GATTATTTAGTAAATAATTATATGAAAAGGGGTATTTTCGTAATTATGGTATGAAG
63 T-TTGAAGAGATTATTTAGT-AATAATTATAAGAAAA--AGTATTTTTGTAATTATGCTA-CAAG
*
12870503 -G
123 AA
* * * * *
12870504 CATAATAGTCCATTTGGCCACATGTC---TTATTAT-ATAT--TTGAAATGGTATTTTGGTAATT
1 AATAATAGTCCATTTGGTCACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTT-GTAATT
* * * * * * *
12870563 TCATAAAGGATT-GTTACATGAATAATTATAA-AAGAAGGTTATTTTTGTAATTATGATATGAAG
65 TGA-AGA-GATTATTTA-GT-AATAATTATAAGAA-AAAG-TATTTTTGTAATTATGCTA-CAAG
*
12870626 -G
123 AA
* * * *
12870627 CATAATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATTGGAAAA-GTCATTTAAGTAA
1 AATAATAGTCCATTTGGTCACATGTCAATTTCTTATCATATAA-TGGAAAAGGT-ATTT-TGTAA
* * *** * * *
12870691 TTTCTTAAGGGATTATTTAGTAAATAATTATAAGAGAGGGGGTATTCTCGTAATTATGGTATGCA
63 -TT-TGAAGAGATTATTTAGT-AATAATTATAAGA-A-AAAGTATTTTTGTAATTATGCTA--CA
*
12870756 AG-C
121 AGAA
** *** * * * *
12870759 AA-AATAGTTTATTTAACCACGTGTCAATTTCTTATCATATATTGGAAATGGTATTTTTTTTAAT
1 AATAATAGTCCATTTGGTCACATGTCAATTTCTTATCATATAATGGAAAAGGTA--TTTTGTAAT
* * * * * *
12870823 TT-ATTTGAGATTATTTAGTAAATATTTATAA-AAGAATGTCTATTTTCGTATTTATG--ACATG
64 TTGA--AGAGATTATTTAGT-AATAATTATAAGAA-AAAG--TATTTTTGTAATTATGCTACAAG
*
12870884 AG
123 AA
** * * * ** * * * * * * * * *
12870886 TGTGACTTGTCAATTTGACCACATATCAATTTTTTATTACATAATAGAAAGGGCATTGTTATGAT
1 AAT-AATAGTCCATTTGGTCACATGTCAATTTCTTATCATATAATGGAAAAGGTATT-TTGT-AA
** * * ** *
12870951 TTTTTAGGGATTATTAAGTAAATAATTATAAGTGAAGGAGTATTTTCT-TAATTATTGC-ATGAA
63 TTTGAAGAGATTATTTAGT-AATAATTATAA--GAAAAAGTATTTT-TGTAATTA-TGCTA-CAA
*
12871014 GAC
122 GAA
* ** * * *
12871017 CA-AATAGTTTATTTGG-CTATATGTCAATTTCTTATTC-TTTAATGGAAAAGGCATTTTGATAA
1 AATAATAGTCCATTTGGTC-ACATGTCAATTTCTTA-TCATATAATGGAAAAGGTATTTTG-TAA
* ** **
12871079 TTTTGCAACAGATTATTTAGTAATAATTATAAGATACGAGTAATTTTT-TAATTATAGCT-TGAG
63 -TTTG-AAGAGATTATTTAGTAATAATTATAAGA-AAAAGT-ATTTTTGTAATTAT-GCTACAAG
*
12871142 AG
123 AA
* **
12871144 AATACTAGTCCATTTGGTCACATGTCAATTTCTTATCATATAATGGAAGGGGTATTTTGGTAACT
1 AATAATAGTCCATTTGGTCACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTT-GTAA-T
* * * *
12871209 TT-ATATGGGATTATTTAGAAAATAATTGTAAGAAAAAGTATTTTTGTAATTATGGTACAAGAA
64 TTGA-A-GAGATTATTTAG-TAATAATTATAAGAAAAAGTATTTTTGTAATTATGCTACAAGAA
*
12871272 AATAATAGTCCATTTGGTCACATGTCATTTTCTTATCATATAAT-GAAAAGGGTATTTTGTAATT
1 AATAATAGTCCATTTGGTCACATGTCAATTTCTTATCATATAATGGAAAA-GGTATTTTGTAATT
12871336 TGATAGAGGATTATTTAGTAAATAATTATAAG
65 TGA-AGA-GATTATTTAGT-AATAATTATAAG
12871368 GAATGGGGTA
Statistics
Matches: 659, Mismatches: 142, Indels: 129
0.71 0.15 0.14
Matches are distributed among these distances:
121 3 0.00
122 4 0.01
123 53 0.08
124 33 0.05
126 16 0.02
127 60 0.09
128 181 0.27
129 117 0.18
130 112 0.17
131 67 0.10
132 13 0.02
ACGTcount: A:0.35, C:0.08, G:0.17, T:0.40
Consensus pattern (124 bp):
AATAATAGTCCATTTGGTCACATGTCAATTTCTTATCATATAATGGAAAAGGTATTTTGTAATTT
GAAGAGATTATTTAGTAATAATTATAAGAAAAAGTATTTTTGTAATTATGCTACAAGAA
Found at i:12871637 original size:259 final size:253
Alignment explanation
Indices: 12870132--12873692 Score: 1537
Period size: 260 Copynumber: 13.8 Consensus size: 253
12870122 AGTAGTTAAT
* * * * *
12870132 TTTACCACATGTCAATTTCATA-TCATATAATGGAAAAGGCATTTTGGCAATTTCCTTA-AGGAT
1 TTTACCACATGTCAATTTCTTATTC--ATAATGGAAAGGGTATTTTGGTAATTT-CTTATGGGAT
* * * * * *
12870195 TATTTGGTAAATAATTATAAAAGAATGGGTATTTTCATAATTATGGCATGAGGGCATAATGGTCA
63 TATTTAGTAAATAATTATAAGAGAA-GGGTATTTTCGTAATTATGGTATAAGGGCATAATAGTC-
* * * **
12870260 ATTTGG-CTTCATGTCAA-TTTTTTATCA-ATAA---AAAGGGAATTTTGGTAATTTCATAAGGG
126 ATTTGGAC-ACATGT-AACTTTCTTATCATATAATGGAAAGGGCATTTT-GTAATTTTGTAAGGG
* * * *
12870319 ATTATTTATTAAATAATTATGCA-AGAA-GGGTATTTTCATAATTA-AGGTATGAAAGAATAATA
188 -TTATTTAGTAAATAATTAT-AAGAGAAGGGGTATTTTCATAATTATA-ATATG-AGGAATAATA
*
12870381 GTCAA
249 ATCAA
** ** * * *
12870386 TTTGGTCACATGTCAATTTCTTAGCCCATAATGGAAATGGCATTTTAGG-AATTTCTTGA-AGGA
1 TTT-ACCACATGTCAATTTCTTA-TTCATAATGGAAAGGGTATTTT-GGTAATTTCTT-ATGGGA
* *
12870449 TTATTTAGTAAATAATTATATGAAAAGGGGTATTTTCGTAATTATGGTATGAA-GGCATAATAGT
62 TTATTTAGTAAATAATTATAAGAGAA-GGGTATTTTCGTAATTATGGTAT-AAGGGCATAATAGT
* * * * * **
12870513 CCATTTGGCCACATGT--C-TTATTAT-ATAT--TTGAAATGGTATTTTGGTAATTTCATAAAGG
125 -CATTTGGACACATGTAACTTTCTTATCATATAATGGAAAGGGCATTTT-GTAATTTTGT-AAGG
* * * * * * ** * * *
12870572 ATT-GTTACATGAATAATTATAAAAGAA-GGTTATTTTTGTAATTATGATATGAAGGCATAATAG
187 GTTATTTA-GTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAATATG-AGGAATAATAA
12870635 TCAA
250 TCAA
* * ** *
12870639 TTTGGCCACATGTCAATTTCTTA-TCATATAATTGGAAA-AGTCATTTAAGTAATTTCTTAAGGG
1 TTT-ACCACATGTCAATTTCTTATTC--ATAA-TGGAAAGGGT-ATTTTGGTAATTTCTTATGGG
* * *
12870702 ATTATTTAGTAAATAATTATAAGAGAGGGGGTATTCTCGTAATTATGGTATGCAA--GCAAAATA
61 ATTATTTAGTAAATAATTATAAGAGA-AGGGTATTTTCGTAATTATGGTAT--AAGGGCATAATA
* * * * * * * *
12870765 GTTTATTT-AACCACGTGTCAA-TTTCTTATCATATATTGGAAATGGTATTTTTTTTAATTTATT
123 G-TCATTTGGA-CACATGT-AACTTTCTTATCATATAATGGAAAGGGCA--TTTTGTAATTT-TG
* * * * * ** * * * *
12870828 TGA-GATTATTTAGTAAATATTTATAAAAGAATGTCTATTTTCGTATTTATGACATGAGTG--TG
182 TAAGGGTTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAATATGAG-GAAT-
* **
12870890 ACTTGTCAA
245 AATAATCAA
* * * * * * *
12870899 TTTGACCACATATCAATTTTTTATTACATAATAGAAAGGGCATTGTT-ATGATTTTTTA-GGGAT
1 TTT-ACCACATGTCAATTTCTTATT-CATAATGGAAAGGGTATT-TTGGTAATTTCTTATGGGAT
* * * * * **
12870962 TATTAAGTAAATAATTATAAGTGAAGGAGTATTTTCTTAATTATTGCATGAAGACCA-AATAGTT
63 TATTTAGTAAATAATTATAAGAGAAGG-GTATTTTCGTAATTATGGTAT-AAGGGCATAATAG-T
* * * * *
12871026 TATTTGG-CTATATGTCAA-TTTCTTATTC-TTTAATGGAAAAGGCATTTTGATAATTTTGCAAC
125 CATTTGGAC-ACATGT-AACTTTCTTA-TCATATAATGGAAAGGGCATTTTG-TAATTTTGTAA-
* * * * * * * *
12871088 AGATTATTTAGT-AATAATTATAAGA-TACGAGTAATTTT-TTAATTATAGCT-TGAGAGAATAC
185 GGGTTATTTAGTAAATAATTATAAGAGAAGGGGT-ATTTTCATAATTATA-ATATGAG-GAATAA
* *
12871149 TAGTCCA
247 TAATCAA
** * *
12871156 TTTGGTCACATGTCAATTTCTTA-TCATATAATGGAAGGGGTATTTTGGTAACTTT-ATATGGGA
1 TTT-ACCACATGTCAATTTCTTATTC--ATAATGGAAAGGGTATTTTGGTAA-TTTCTTATGGGA
* * ** * * ***
12871219 TTATTTAGAAAATAATTGTAAGA-AAAAGTATTTTTGTAATTATGGTACAAGAAAATAATAGTCC
62 TTATTTAGTAAATAATTATAAGAGAAGGGTATTTTCGTAATTATGGTATAAGGGCATAATAGT-C
* * * * * *
12871283 ATTTGGTCACATGTCATTTTCTTATCATATAATGAAAAGGGTATTTTGTAA-TTTGATAGAGGAT
126 ATTTGGACACATGTAACTTTCTTATCATATAATGGAAAGGGCATTTTGTAATTTTG-TA-AGGGT
* * ** *
12871347 TATTTAGTAAATAATTATAAG-GAATGGGGTATTTTCCTAATTATAATATGATGGAATATTTGTT
189 TATTTAGTAAATAATTATAAGAGAA-GGGGTATTTTCATAATTATAATATGA-GGAATAATAATC
12871411 AA
252 AA
* * * *
12871413 TTTCACCACATGCCTATTTCTTATTGCATAATGGAAAGTGTCTTTTGGTAATTTCTTATGGGATT
1 TTT-ACCACATGTCAATTTCTTATT-CATAATGGAAAGGGTATTTTGGTAATTTCTTATGGGATT
*
12871478 ATTTAGTAAATAATTATAAGAGAAGTGGTATTTTCGTAATTATGGTATAAGGGCATAACAGTACA
64 ATTTAGTAAATAATTATAAGAGAAG-GGTATTTTCGTAATTATGGTATAAGGGCATAATAGT-CA
* * * * * *
12871543 TTTGGACACATGTTACTTTCTCATCAAATAATGGGATGGGCAGTTTTATAATTTTGTAAGGGTTA
127 TTTGGACACATGTAACTTTCTTATCATATAATGGAAAGGGCA-TTTTGTAATTTTGTAAGGGTTA
** * *
12871608 TTTAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATAATATGAGGGCATAATAATCTA
191 TTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAATATGA-GGAATAATAATCAA
* ** * *
12871672 TTTAGCCACATGTCAAGTTT-TTATT-ATCTAATGAAAAAAGTATTTTCGTAATTTCAT-TGGAG
1 TTTA-CCACATGTCAA-TTTCTTATTCA--TAATGGAAAGGGTATTTTGGTAATTTCTTATGG-G
* * * ** * *
12871734 ATTAATTTAGTAATTAATTATAAGAGAGGGGGTATTTTTGTAATTACAGTATAAAGGCATACTAG
61 ATT-ATTTAGTAAATAATTATAAGAGA-AGGGTATTTTCGTAATTATGGTATAAGGGCATAATAG
* *** * ** * ** ** *
12871799 TCAATTTGGCCACATGTAAAC-TTCTTATCATATAACAAAAAAGGTGTTTCGATAAAATAATATG
124 TC-ATTTGGACACATGT-AACTTTCTTATCATATAATGGAAAGGGCATTTTG-TAATTTTGTAAG
* * ** *** *
12871863 GGATTATTTAGT-AATAATTATAAAAGAATGGGTATTTTTGTAATTACGGTATGAAGGAATTATA
186 GG-TTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAATATG-AGGAATAATA
*
12871927 ATCCA
249 ATCAA
* ** *
12871932 TTTA--AC-T-TC-ATATC--A-T-ATAATGGAAAACGTATTTTGGTAATTT-TATAGGGGATTA
1 TTTACCACATGTCAATTTCTTATTCATAATGGAAAGGGTATTTTGGTAATTTCT-TATGGGATTA
* * * * *
12871987 TTTAGCCAAA-AATTATAAGAGGAAGGGCATTTTCGTAGTTATGCTTTTTGAA-GGCATAATAGT
65 TTTAG-TAAATAATTATAAGA-GAAGGGTATTTTCGTAATTATG--GTAT-AAGGGCATAATAGT
** * * **
12872050 CAATTTGTCCACATGTAAATTTCTTATCATACAATGGAAAAGGGCATTTTGGTAATTTTGTTGGG
125 C-ATTTGGACACATGTAACTTTCTTATCATATAATGG-AAAGGGCATTTT-GTAATTTTGTAAGG
* * *
12872115 GATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTTCATAATTATGATGTGA-GATATAATT
187 G-TTATTTAGTAAATAATTATAAGAGAAGGGGTA-TTTTCATAATTATAATATGAGGA-ATAATA
*
12872179 GTCAA
249 ATCAA
* * * * * *
12872184 TTTGGCCACATATCAATTTCTTATTATATAAAGGAAAGGGAATTTTGGTAATTTCTTA-GGGGTT
1 TTT-ACCACATGTCAATTTCTTATT-CATAATGGAAAGGGTATTTTGGTAATTTCTTATGGGATT
* * *
12872248 AATTT-GTAAATAATTATAAGAGAAAGAGTACTTTCGTAATTATGATATAAAGGTGC--AATAGT
64 -ATTTAGTAAATAATTATAAGAG-AAGGGTATTTTCGTAATTATGGTAT-AAGG-GCATAATAGT
* * * * * ** * * *
12872310 ACATTTGGATAGATGTTACTTTCTCATCAAATAATGGGGTA-GGTATTTTTGTAATTTCGTAAAG
125 -CATTTGGACACATGTAACTTTCTTATCATATAAT-GGAAAGGGCA-TTTTGTAATTTTGTAAGG
* * * * * * * * * * **
12872374 GTTATTAAGCAAATTACTATAAAAG-ATGGGTATTTTCATAATCATGATATAAAGGTATAATTGT
187 GTTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAATAT-GAGGAATAATAAT
*
12872438 CGA
251 CAA
*** * * ** **
12872441 TTCGGTCACATGCCAATTTGTTA-TCATCTAATGGAAAAGGGTATTTTCATAATTT-TATAAAGG
1 TT-TACCACATGTCAATTTCTTATTCA--TAATGG-AAAGGGTATTTTGGTAATTTCT-TATGGG
* * * * * * * *
12872504 ATTATTT-GTAAAGAATTATAAAAGAATGGGTATTTTCATCATTATGATAAAAAGGCATAATTGT
61 ATTATTTAGTAAATAATTATAAGAGAA-GGGTATTTTCGTAATTATGGTATAAGGGCATAATAGT
* ** **
12872568 CAATTT-GACCACATGTCAA-TTTCCTATCATATAATGGAAAGGTTATTTTGGTAATTTCCTAGA
125 C-ATTTGGA-CACATGT-AACTTTCTTATCATATAATGGAAAGGGCATTTT-GTAATTTTGTA-A
* * * * * ** * * *** *
12872631 TGATTA-TTGGACAAATAATTATAAGATAAGGCATATTTTCATACTTGTGGCATGAGGGCATAAT
185 GGGTTATTTAG-TAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAATATGA-GGAATAAT
* ***
12872695 AGTTTG
248 AATCAA
** * * * *
12872701 TTGGGCCACATGTCAATTTCTTA-TCATGTAATGAAAAGGGCATTTTGGTAATTTCATAGGGGA-
1 TT-TACCACATGTCAATTTCTTATTCA--TAATGGAAAGGGTATTTTGGTAATTTCTTATGGGAT
* * * * * *** * *
12872764 TATTCAATAAATAATTATAAGAGATGGGTATTTTTTGTAATTATGGTATGAGAAAATATTAGTTT
63 TATTTAGTAAATAATTATAAGAGAAGGGTA-TTTTCGTAATTATGGTATAAGGGCATAATAG-TC
** * * * * * * ** *
12872829 ATTTGTTCACATGTCAA-TTTTTTATCATAAAATGGAAAGCGTACTTTGGTAATATAATATGGGA
126 ATTTGGACACATGT-AACTTTCTTATCATATAATGGAAAGGGCA-TTTTGTAATTTTGTAAGGG-
* * **** ** ** * **
12872893 TTATTTAGT-AATAATTATAAGTGGACAAATATTTTCATAATTATGGTACAAAGGAATTATAGCC
188 TTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAATA-TGAGGAATAATA-AT
12872957 CAA
251 CAA
*** ** ** *
12872960 TTGGTCACATGTCAATTTCTTA-TCATATAAAGAAAGGGTATTTTTATAATTTCATA-GGAGATT
1 TTTACCACATGTCAATTTCTTATTCATA-ATGGAAAGGGTATTTTGGTAATTTCTTATGG-GATT
* * * * * * *
12873023 ATTTAGTAAGTAGTTATGATAGAAGGCGTATTCTT-ATAATTAT--TAGTGAGGGCATAATATTC
64 ATTTAGTAAATAATTATAAGAGAAGG-GTATT-TTCGTAATTATGGTA-TAAGGGCATAATAGTC
* * * **
12873085 AATTTAGTCACATAG-AGA-TTTCTTATCATACAATGGAAA-GGCATTTTGGTAATTTCAT-AGT
126 -ATTTGGACACAT-GTA-ACTTTCTTATCATATAATGGAAAGGGCATTTT-GTAATTTTGTAAG-
* * * * * *
12873146 GGATTATTTAGTAAACAATTATAAAAGAA-GGGTATTTTCATAACTATGATATGAAAGAATAATT
186 GG-TTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAATATG-AGGAATAATA
*
12873210 ATTAA
249 ATCAA
* ** * * * * * *
12873215 TTTGATCACATGTCAATTTCTTATTGTTTAAAGGAAAAGGCATCTTGGTAACTTCTT-TAGGGGT
1 TTT-ACCACATGTCAATTTCTTATT-CATAATGGAAAGGGTATTTTGGTAATTTCTTAT-GGGAT
* * * * *
12873279 TATTTAGTAAATAATTATAAAAGAAGGGATATTTTCATAATTATGGTATGATGGTATAATAGTCT
63 TATTTAGTAAATAATTATAAGAGAAGGG-TATTTTCGTAATTATGGTATAAGGGCATAATAGTC-
* * * **
12873344 ATTCGGCCACATGTCAA-TTTCTTATCATATAATGGAAAGGGTAATTGTT-TAATTTCAT-AGGA
126 ATTTGGACACATGT-AACTTTCTTATCATATAATGGAAAGGG-CATT-TTGTAATTTTGTAAGG-
* * * * * *
12873406 GATTATTTAGTAAATAATTTTAAGAGAAGTGGTATTTTCATAATTATGATA-AAGGGACGTAATT
187 G-TTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAATATGA-GGA-ATAATA
12873470 ATCAA
249 ATCAA
* * * * * * * *
12873475 TTTGGCCACATGTTAATTTCTTATTGTATAAAGAAAAAGGCATTTTGGTAATCTTGTTA-GGGAT
1 TTT-ACCACATGTCAATTTCTTATT-CATAATGGAAAGGGTATTTTGGTAAT-TTCTTATGGGAT
* * * * * * *
12873539 TATTTATTAAATAATTATAGGATAAGGTGCATTTTTGTAATTATGATATGAGGGCATAATTA-TC
63 TATTTAGTAAATAATTATAAGAGAAGG-GTATTTTCGTAATTATGGTATAAGGGCATAA-TAGTC
* ** *
12873603 AATTT-GACCACATATCAA-TTTCTTATTGTATAGA-GAAAAGGGCATTTTGTAATTTCT-TAAA
126 -ATTTGGA-CACATGT-AACTTTCTTATCATATA-ATGGAAAGGGCATTTTGTAATTT-TGT-AA
*
12873664 GGGTTATTTAGTCAATAATTATAAGAGAA
185 GGGTTATTTAGTAAATAATTATAAGAGAA
12873693 TGGGCTTTTT
Statistics
Matches: 2558, Mismatches: 548, Indels: 397
0.73 0.16 0.11
Matches are distributed among these distances:
248 30 0.01
249 34 0.01
250 42 0.02
251 34 0.01
252 45 0.02
253 114 0.04
254 99 0.04
255 149 0.06
256 203 0.08
257 364 0.14
258 404 0.16
259 416 0.16
260 483 0.19
261 70 0.03
262 41 0.02
263 29 0.01
264 1 0.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (253 bp):
TTTACCACATGTCAATTTCTTATTCATAATGGAAAGGGTATTTTGGTAATTTCTTATGGGATTAT
TTAGTAAATAATTATAAGAGAAGGGTATTTTCGTAATTATGGTATAAGGGCATAATAGTCATTTG
GACACATGTAACTTTCTTATCATATAATGGAAAGGGCATTTTGTAATTTTGTAAGGGTTATTTAG
TAAATAATTATAAGAGAAGGGGTATTTTCATAATTATAATATGAGGAATAATAATCAA
Found at i:12871724 original size:129 final size:130
Alignment explanation
Indices: 12870136--12874040 Score: 2212
Period size: 129 Copynumber: 30.3 Consensus size: 130
12870126 GTTAATTTTA
* * * *
12870136 CCACATGTCAATTTCATATCATATAATGGAAAAGGCATTTTGGCAATTTCCT-TAA-GGATTATT
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTT--TATAAGGGATTATT
* * * ** * *
12870199 TGGTAAATAATTATAAAAGAATGGGTATTTTCATAATTATGGCATGAGGGCATAATGGTCAATTT
64 TAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTT
12870264 GG
129 GG
** * * *
12870266 CTTCATGTCAATTTTTTATCA-ATAA---AAAGGGAATTTTGGTAATTTCATAAGGGATTATTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTA
* * ** * ** *
12870327 TTAAATAATTATGCA-AGAA-GGGTATTTTCATAATTAAGGTATGAAAGAATAATAGTCAATTTG
66 GTAAATAATTAT-AAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTG
12870390 G
130 G
* * ** * *
12870391 TCACATGTCAATTTCTTAGCCCATAATGGAAATGGCATTTTAGG-AATTTCT-TGAA-GGATTAT
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTT-GGTAATTT-TAT-AAGGGATTAT
* * * * *
12870453 TTAGTAAATAATTATATGAAAAGGGGTATTTTCGTAATTATGGTATGAAGGCATAATAGTCCATT
63 TTAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATT
12870518 TGG
128 TGG
* * * * * *
12870521 CCACATGTC---TTATTAT-ATAT--TTGAAATGGTATTTTGGTAATTTCATAAAGGATT-GTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTA
* * * * * *
12870579 CATGAATAATTATAAAAGAA-GGTTATTTTTGTAATTATGATATGAAGGCATAATAGTCAATTTG
66 -GTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTG
12870643 G
130 G
* **
12870644 CCACATGTCAATTTCTTATCATATAATTGGAAA-AGTCATTTAAGTAATTTCT-TAAGGGATTAT
1 CCACATGTCAATTTCTTATCATATAA-TGGAAAGGGT-ATTTTGGTAATTT-TATAAGGGATTAT
* * * * * **
12870707 TTAGTAAATAATTATAAGAGAGGGGGTATTCTCGTAATTATGGTATGCA-AGCAAAATAGTTTAT
63 TTAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATG-AGGGCATAATAGTCAAT
**
12870771 TTAA
127 TTGG
* * * ** ** *
12870775 CCACGTGTCAATTTCTTATCATATATTGGAAATGGTATTTTTTTTAA-TTTATTTGAGATTATTT
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTA-TTTTGGTAATTTTATAAGGGATTATTT
* * * ** * * ** * * *
12870839 AGTAAATATTTATAAAAGAATGTCTATTTTCGTATTTATGACATGAGTG--TGACTTGTCAATTT
65 AGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCAT-AATAGTCAATTT
*
12870902 GA
129 GG
* * * * * * * * * *
12870904 CCACATATCAATTTTTTATTACATAATAGAAAGGGCATTGTT-ATGATTTT-TTAGGGATTATTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATT-TTGGTAATTTTATAAGGGATTATTT
* * * * ** **
12870967 AGTAAATAATTATAAGTGAAGGAGTATTTTCT-TAATTATTGCATGAAGACCA-AATAGTTTATT
65 AGTAAATAATTATAAGAGAAGGGGTATTTT-TGTAATTATGGTATG-AGGGCATAATAGTCAATT
12871030 TGG
128 TGG
* * * * * * ** **
12871033 CTATATGTCAATTTCTTATTC-TTTAATGGAAAAGGCATTTTGATAATTTTGCAACAGATTATTT
1 CCACATGTCAATTTCTTA-TCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTT
* * * * * * * *
12871097 AGT-AATAATTATAAGA-TACGAGTAATTTTT-TAATTATAGCT-TGAGAGAATACTAGTCCATT
65 AGTAAATAATTATAAGAGAAGGGGT-ATTTTTGTAATTAT-GGTATGAGGGCATAATAGTCAATT
12871158 TGG
128 TGG
* * * *
12871161 TCACATGTCAATTTCTTATCATATAATGGAAGGGGTATTTTGGTAACTTTATATGGGATTATTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTA
* * ** ** *** *
12871226 GAAAATAATTGTAAGA-AA-AAGTATTTTTGTAATTATGGTACAAGAAAATAATAGTCCATTTGG
66 GTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGG
* * * *
12871289 TCACATGTCATTTTCTTATCATATAATGAAAAGGGTATTTT-GTAATTTGAT-AGAGGATTATTT
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAG-GGATTATTT
** ** * * * * *
12871352 AGTAAATAATTATAAG-GAATGGGGTATTTTCCTAATTATAATATGATGGAATATTTGTTAATTT
65 AGTAAATAATTATAAGAGAA-GGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTT
**
12871416 CA
129 GG
* * *** * * *
12871418 CCACATGCCTATTTCTTATTGCATAATGGAAAGTGTCTTTTGGTAATTTCT-TATGGGATTATTT
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTT-TATAAGGGATTATTT
* * * *
12871482 AGTAAATAATTATAAGAGAAGTGGTATTTTCGTAATTATGGTATAAGGGCATAACAGT-ACATTT
65 AGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCA-ATTT
12871546 GG
129 GG
* * * * * * * * * *
12871548 ACACATGTTACTTTCTCATCAAATAATGGGATGGGCAGTTTT-ATAATTTTGTAAGGG-TTATTT
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTA-TTTTGGTAATTTTATAAGGGATTATTT
** * * *
12871611 AGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATAATATGAGGGCATAATAATCTATTTA
65 AGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTG
12871676 G
130 G
* * * ** * * *
12871677 CCACATGTCAAGTTT-TTATTATCTAATGAAAAAAGTATTTTCGTAATTTCAT-TGGAGATTAAT
1 CCACATGTCAA-TTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGG-GATT-AT
* * ** * * *
12871740 TTAGTAATTAATTATAAGAGAGGGGGTATTTTTGTAATTACAGTATAAAGGCATACTAGTCAATT
63 TTAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATT
12871805 TGG
128 TGG
* * *** * * * * ** * *
12871808 CCACATGTAAACTTCTTATCATATAACAAAAAAGGTGTTTCGATAAAATAATATGGGATTATTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTA
* * * * *
12871873 GT-AATAATTATAAAAGAATGGGTATTTTTGTAATTACGGTATGAAGG-A-ATTA-T-AA--T--
66 GTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGG
* * * ** *
12871929 -C-CAT-TTAACTTCATATCATATAATGGAAAACGTATTTTGGTAATTTTATAGGGGATTATTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTA
* * * * * * *
12871991 GCCAAA-AATTATAAGAGGAA-GGGCATTTTCGTAGTTATGCTTTTTGAAGGCATAATAGTCAAT
66 G-TAAATAATTATAAGA-GAAGGGGTATTTTTGTAATTATG--GTATGAGGGCATAATAGTCAAT
*
12872054 TTGT
127 TTGG
* * * * **
12872058 CCACATGTAAATTTCTTATCATACAATGGAAAAGGGCATTTTGGTAATTTTGTTGGGGATTATTT
1 CCACATGTCAATTTCTTATCATATAATGG-AAAGGGTATTTTGGTAATTTTATAAGGGATTATTT
* * * ** *
12872123 AGTAAATAATTATAAGAGAAGGGGTATTTTTCATAATTATGATGTGA-GATATAATTGTCAATTT
65 AGTAAATAATTATAAGAGAAGGGGTATTTTT-GTAATTATGGTATGAGGGCATAATAGTCAATTT
12872187 GG
129 GG
* * * * *
12872189 CCACATATCAATTTCTTATTATATAAAGGAAAGGGAATTTTGGTAATTTCT-T-AGGGGTTAATT
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTT-TATAAGGGATT-ATT
* * * * * *
12872252 T-GTAAATAATTATAAGAGAAAGAGTACTTTCGTAATTATGATATAAAGGTGC--AATAGT-ACA
64 TAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTAT-GAGG-GCATAATAGTCA-A
12872313 TTTGG
126 TTTGG
** * * * * * ** * ** * *
12872318 ATAGATGTTACTTTCTCATCAAATAATGGGGTA-GGTATTTTTGTAATTTCGTAAAGG-TTATTA
1 CCACATGTCAATTTCTTATCATATAAT-GGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTT
* * * * * ** * * * * * * * *
12872381 AGCAAATTACTATAAAAG-ATGGGTATTTTCATAATCATGATATAAAGGTATAATTGTCGATTCG
65 AGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTG
12872445 G
130 G
* * * * ** *
12872446 TCACATGCCAATTTGTTATCATCTAATGGAAAAGGGTATTTTCATAATTTTATAAAGGATTATTT
1 CCACATGTCAATTTCTTATCATATAATGG-AAAGGGTATTTTGGTAATTTTATAAGGGATTATTT
* * * ** * * ** * *
12872511 -GTAAAGAATTATAAAAGAATGGGTATTTTCATCATTATGATAAAAAGGCATAATTGTCAATTTG
65 AGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTG
*
12872575 A
130 G
* * ** *
12872576 CCACATGTCAATTTCCTATCATATAATGGAAAGGTTATTTTGGTAATTTCCT-AGATGATTA-TT
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAG-GGATTATTT
* * * ** ** * * * *** *
12872639 GGACAAATAATTATAAGATAAGGCATATTTTCATACTTGTGGCATGAGGGCATAATAGTTTGTTG
65 AG-TAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTT
12872704 GG
129 GG
* * * * * *
12872706 CCACATGTCAATTTCTTATCATGTAATGAAAAGGGCATTTTGGTAATTTCATAGGGGA-TATTCA
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTA
* * *** * **
12872770 ATAAATAATTATAAGAG-ATGGGTATTTTTTGTAATTATGGTATGAGAAAATATTAGTTTATTTG
66 GTAAATAATTATAAGAGAAGGGGTA-TTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTG
*
12872834 T
130 G
* * * * * * * *
12872835 TCACATGTCAATTTTTTATCATAAAATGGAAAGCGTACTTTGGTAATATAATATGGGATTATTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTA
* * **** ** ** * * * *
12872900 GT-AATAATTATAAGTGGACAAATATTTTCATAATTATGGTACAAAGGAATTATAGCCCAA-TTG
66 GTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAG-TCAATTTG
12872963 G
130 G
* * ** *
12872964 TCACATGTCAATTTCTTATCATATAA-AGAAAGGGTATTTTTATAATTTCAT-AGGAGATTATTT
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGG-GATTATTT
* * * * * * * *
12873027 AGTAAGTAGTTATGATAGAAGGCGTATTCTTATAATTAT--TAGTGAGGGCATAATATTCAATTT
65 AGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTA-TGAGGGCATAATAGTCAATTT
*
12873090 AG
129 GG
* * * *
12873092 TCACATAG--AGATTTCTTATCATACAATGGAAA-GGCATTTTGGTAATTTCAT-AGTGGATTAT
1 CCACAT-GTCA-ATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAG-GGATTAT
* * ** * * ** * *
12873153 TTAGTAAACAATTATAAAAGAA-GGGTATTTTCATAACTATGATATGAAAGAATAATTA-TTAAT
63 TTAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAA-TAGTCAAT
*
12873216 TTGA
127 TTGG
* ** * * * * * *
12873220 TCACATGTCAATTTCTTATTGTTTAAAGGAAAAGGCATCTTGGTAACTTCTT-T-AGGGGTTATT
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAA-TT-TTATAAGGGATTATT
* * ** * * * *
12873283 TAGTAAATAATTATAAAAGAAGGGATATTTTCATAATTATGGTATGATGGTATAATAGTCTATTC
64 TAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTT
12873348 GG
129 GG
*
12873350 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTAATTGTT--TAATTTCAT-AGGAGATTAT
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGT-ATT-TTGGTAATTTTATAAGG-GATTAT
* * ** * * *
12873412 TTAGTAAATAATTTTAAGAGAAGTGGTATTTTCATAATTATGATA-AAGGGACGTAATTA-TCAA
63 TTAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGG-CATAA-TAGTCAA
12873475 TTTGG
126 TTTGG
* ** * * * * * * *
12873480 CCACATGTTAATTTCTTATTGTATAAAGAAAAAGGCATTTTGGTAATCTTGTTAGGGATTATTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTA
* * * * * *
12873545 TTAAATAATTATAGGATAAGGTGCATTTTTGTAATTATGATATGAGGGCATAATTA-TCAATTTG
66 GTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAA-TAGTCAATTTG
*
12873609 A
130 G
* ** * *
12873610 CCACATATCAATTTCTTATTGTATAGA-GAAAAGGGCATTTT-GTAATTTCT-TAAAGGG-TTAT
1 CCACATGTCAATTTCTTATCATATA-ATGGAAAGGGTATTTTGGTAATTT-TAT-AAGGGATTAT
* * * * * * *
12873671 TTAGTCAATAATTATAAGAGAATGGGCT-TTTTTGTAATTATGATCA-AAAGCCATAATGGT-AC
63 TTAGTAAATAATTATAAGAGAA-GGGGTATTTTTGTAATTATGGT-ATGAGGGCATAATAGTCA-
12873733 ATTTGG
125 ATTTGG
* * * * * * * * *
12873739 ACACATGTTACTTTCTTATCAAATAATGGGATGGATAATGTT-GTAA-TTTGTAAGGG-TT-TTG
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGT-ATTTTGGTAATTTTATAAGGGATTATT-
* * * * * * *
12873800 TAGTAAAGAATTATAAGAAAATGGGTACTTTTGTAATTATGATATAAGGGTATAATAGTTC-ATT
64 TAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAG-TCAATT
**
12873864 CAG
128 TGG
* * * * ** *
12873867 TCACATGTCAATTTCTCAT-ATCTAATGGGAAGGGTATTTTCATAATTTCATAAGGGATTATTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTA
* * * * ** * * * *
12873931 TTAATTAATTGTAAGAAAAGGAATATTTTTGTAATTATGGAATTAAGGTATAATAGTTC-ATTTG
66 GTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAG-TCAATTTG
*
12873995 T
130 G
* * * * *
12873996 CCATATGACAATTTCTTACCATATAATGGAAAAGGCATTTTGGTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTA
12874041 TAAATAATTA
Statistics
Matches: 2907, Mismatches: 706, Indels: 324
0.74 0.18 0.08
Matches are distributed among these distances:
118 46 0.02
119 27 0.01
120 6 0.00
121 7 0.00
122 1 0.00
123 61 0.02
124 39 0.01
125 61 0.02
126 60 0.02
127 110 0.04
128 491 0.17
129 895 0.31
130 780 0.27
131 232 0.08
132 34 0.01
133 50 0.02
134 7 0.00
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.39
Consensus pattern (130 bp):
CCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTATAAGGGATTATTTA
GTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATGGTATGAGGGCATAATAGTCAATTTGG
Found at i:12871774 original size:131 final size:129
Alignment explanation
Indices: 12871605--12871909 Score: 346
Period size: 131 Copynumber: 2.3 Consensus size: 129
12871595 TTTGTAAGGG
* * *
12871605 TTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTTGTAATTATAATATGAGGGCATAATAATC
1 TTATTTAGT-AATAATTATAAGAGAAGGGGTATTTTTGTAATTACAATATAAAGGCATAATAATC
* * * * * * * * ** *
12871670 TATTTAGCCACATGTCAAGTTTTTATTATCTAATGAAAAAA-GTATTTTCG-TAATTTCAT-TGG
65 AATTTAGCCACATGTAAACTTCTTATCATATAA-CAAAAAAGGT-GTTTCGATAAAATAATATGG
12871732 AGA
128 -GA
* * * *
12871735 TTAATTTAGTAATTAATTATAAGAGAGGGGGTATTTTTGTAATTACAGTATAAAGGCATACTAGT
1 TT-ATTTAGTAA-TAATTATAAGAGAAGGGGTATTTTTGTAATTACAATATAAAGGCATAATAAT
*
12871800 CAATTTGGCCACATGTAAACTTCTTATCATATAACAAAAAAGGTGTTTCGATAAAATAATATGGG
64 CAATTTAGCCACATGTAAACTTCTTATCATATAACAAAAAAGGTGTTTCGATAAAATAATATGGG
12871865 A
129 A
* *
12871866 TTATTTAGTAATAATTATAAAAGAATGGGTATTTTTGTAATTAC
1 TTATTTAGTAATAATTATAAGAGAAGGGGTATTTTTGTAATTAC
12871910 GGTATGAAGG
Statistics
Matches: 148, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
129 30 0.20
130 24 0.16
131 91 0.61
132 3 0.02
ACGTcount: A:0.38, C:0.07, G:0.16, T:0.38
Consensus pattern (129 bp):
TTATTTAGTAATAATTATAAGAGAAGGGGTATTTTTGTAATTACAATATAAAGGCATAATAATCA
ATTTAGCCACATGTAAACTTCTTATCATATAACAAAAAAGGTGTTTCGATAAAATAATATGGGA
Found at i:12872120 original size:133 final size:131
Alignment explanation
Indices: 12871942--12873714 Score: 630
Period size: 130 Copynumber: 13.7 Consensus size: 131
12871932 TTTAACTTCA
* *
12871942 TATCATATAATGGAAAA-CGTATTTTGGTAATTTTATAGGGGATTATTTAGCCAAA-AATTATAA
1 TATCATATAATGGAAAAGGGAATTTTGGTAATTTTATAGGGGATTATTTAG-CAAATAATTATAA
* * * * * * *
12872005 GAGGAA-GGGCA-TTTTCGTAGTTATGCTTTTTGAAGGCATAATAGTCAATTTGTCCACATGTAA
65 GA-GAAGGGGCATTTTTCATAATTATG--ATGTG-AGACATAATAGTCAATTTGGCCACATATAA
12872068 ATTTCT
126 ATTTCT
* * * * *
12872074 TATCATACAATGGAAAAGGGCATTTTGGTAATTTTGTTGGGGATTATTTAGTAAATAATTATAAG
1 TATCATATAATGGAAAAGGGAATTTTGGTAATTTTATAGGGGATTATTTAGCAAATAATTATAAG
* * * *
12872139 AGAAGGGGTATTTTTCATAATTATGATGTGAGATATAATTGTCAATTTGGCCACATATCAATTTC
66 AGAAGGGGCATTTTTCATAATTATGATGTGAGACATAATAGTCAATTTGGCCACATATAAATTTC
12872204 T
131 T
* * *
12872205 TATTATATAAAGG-AAAGGGAATTTTGGTAATTTCT-TAGGGG-TTAATTT-GTAAATAATTATA
1 TATCATATAATGGAAAAGGGAATTTTGGTAATTT-TATAGGGGATT-ATTTAGCAAATAATTATA
* * * * * * * ** ** * * *
12872266 AGAGAAAGAGTA-CTTTCGTAATTATGATAT-AAAGGTGCAATAGT-ACATTTGGATAGATGTTA
64 AGAGAAGGGGCATTTTTCATAATTATGATGTGAGACAT--AATAGTCA-ATTTGGCCACATATAA
*
12872328 CTTTCT
126 ATTTCT
* * *** * * ** ** * * * *
12872334 CATCAAATAATGGGGTA-GGTATTTTTGTAATTTCGTAAAGG-TTATTAAGCAAATTACTATAAA
1 TATCATATAATGGAAAAGGGAATTTTGGTAATTTTATAGGGGATTATTTAGCAAATAATTATAAG
* * * * * ** * * * * ***
12872397 AG-ATGGGTA-TTTTCATAATCATGATATAAAGGTATAATTGTCGATTCGGTCACATGCCAATTT
66 AGAAGGGGCATTTTTCATAATTATGATGT-GAGACATAATAGTCAATTTGGCCACATATAAATTT
*
12872460 GT
130 CT
* * ** ** * * *
12872462 TATCATCTAATGGAAAAGGGTATTTTCATAATTTTATAAAGGATTATTT-GTAAAGAATTATAAA
1 TATCATATAATGGAAAAGGGAATTTTGGTAATTTTATAGGGGATTATTTAGCAAATAATTATAAG
* * * *** * * * * *
12872526 AGAATGGGTA-TTTTCATCATTATGATAAAAAGGCATAATTGTCAATTTGACCACATGTCAATTT
66 AGAAGGGGCATTTTTCATAATTATGAT-GTGAGACATAATAGTCAATTTGGCCACATATAAATTT
*
12872590 CC
130 CT
** ** ** *
12872592 TATCATATAATGG-AAAGGTTATTTTGGTAATTTCCTAGATGATTA-TTGGACAAATAATTATAA
1 TATCATATAATGGAAAAGGGAATTTTGGTAATTTTATAGGGGATTATTTAG-CAAATAATTATAA
* * * * * *** * * *
12872655 GATAA--GGCATATTTTCATACTTGTGGCATGAG-GGCATAATAGTTTGTTGGGCCACATGTCAA
65 GAGAAGGGGCAT-TTTTCATAATTAT-G-ATGTGAGACATAATAGTCAATTTGGCCACATATAAA
12872717 TTTCT
127 TTTCT
* * * * **
12872722 TATCATGTAAT-GAAAAGGGCATTTTGGTAATTTCATAGGGGA-TATTCAATAAATAATTATAAG
1 TATCATATAATGGAAAAGGGAATTTTGGTAATTTTATAGGGGATTATTTAGCAAATAATTATAAG
* * ** * * * * ** ** * *
12872785 AG-ATGGGTATTTTTTGTAATTATGGTATGAGAAAATATTAGTTTATTTGTTCACATGTCAATTT
66 AGAAGGGGCATTTTTCATAATTATGATGTGAG-ACATAATAGTCAATTTGGCCACATATAAATTT
*
12872849 TT
130 CT
* * * * * * * *
12872851 TATCATAAAATGG-AAAGCGTACTTTGGTAATATAATATGGGATTATTTAG-TAATAATTATAAG
1 TATCATATAATGGAAAAGGGAATTTTGGTAATTTTATAGGGGATTATTTAGCAAATAATTATAAG
* **** * *** * * * * *
12872914 TG--GACAAATATTTTCATAATTATGGTACAAAGGA-ATTATAGCCCAA-TTGGTCACATGTCAA
66 AGAAGGGGCAT-TTTTCATAATTATGAT-GTGA-GACATAATAG-TCAATTTGGCCACATATAAA
12872975 TTTCT
127 TTTCT
* * ** * * * * * * *
12872980 TATCATATAA-AG-AAAGGGTATTTTTATAATTTCATAGGAGATTATTTAGTAAGTAGTTATGAT
1 TATCATATAATGGAAAAGGGAATTTTGGTAATTTTATAGGGGATTATTTAGCAAATAATTATAAG
* * * * * * * * * *
12873043 AGAAGGCGTATTCTT-ATAATTATTA-GTGAGGGCATAATATTCAATTTAGTCACATAGAGATTT
66 AGAAGGGGCATTTTTCATAATTATGATGTGA-GACATAATAGTCAATTTGGCCACATATAAATTT
12873106 CT
130 CT
* * * * * * *
12873108 TATCATACAATGG-AAA-GGCATTTTGGTAATTTCATAGTGGATTATTTAGTAAACAATTATAAA
1 TATCATATAATGGAAAAGGGAATTTTGGTAATTTTATAGGGGATTATTTAGCAAATAATTATAAG
* * * * ** * *
12873171 AGAA-GGGTA-TTTTCATAACTATGATATGAAAGA-ATAATTA-TTAATTTGATCACATGTCAAT
66 AGAAGGGGCATTTTTCATAATTATGATGTG--AGACATAA-TAGTCAATTTGGCCACATATAAAT
12873232 TTCT
128 TTCT
** * * * * *
12873236 TATTGTTTAAAGGAAAA-GGCATCTTGGTAACTTCTT-TAGGGG-TTATTTAGTAAATAATTATA
1 TATCATATAATGGAAAAGGGAATTTTGGTAA-TT-TTATAGGGGATTATTTAGCAAATAATTATA
* * * ** * * * *
12873298 AAAGAA-GGG-ATATTTTCATAATTATGGTATGATGGTATAATAGTCTATTCGGCCACATGTCAA
64 AGAGAAGGGGCAT-TTTTCATAATTATGATGTGA-GACATAATAGTCAATTTGGCCACATATAAA
12873361 TTTCT
127 TTTCT
* * * *
12873366 TATCATATAATGG-AAAGGGTAATTGTT--TAATTTCATAGGAGATTATTTAGTAAATAATTTTA
1 TATCATATAATGGAAAAGGG-AATT-TTGGTAATTTTATAGGGGATTATTTAGCAAATAATTATA
* * ** * * * *
12873428 AGAGAAGTGGTA-TTTTCATAATTATGATAAAGGGACGTAATTA-TCAATTTGGCCACATGTTAA
64 AGAGAAGGGGCATTTTTCATAATTATGAT-GTGAGACATAA-TAGTCAATTTGGCCACATATAAA
12873491 TTTCT
127 TTTCT
** * * * **
12873496 TATTGTATAA-AGAAAAAGGCATTTTGGTAATCTTGT-TA-GGGATTATTTATTAAATAATTATA
1 TATCATATAATGGAAAAGGGAATTTTGGTAAT-TT-TATAGGGGATTATTTAGCAAATAATTATA
* * * * * * * *
12873558 GGATAAGGTGCATTTTT-GTAATTATGATATGAGGGCATAATTA-TCAATTTGACCACATATCAA
64 AGAGAAGGGGCATTTTTCATAATTATGATGTGA-GACATAA-TAGTCAATTTGGCCACATATAAA
12873621 TTTCT
127 TTTCT
** * *
12873626 TATTGTAT-A-GAGAAAAGGGCATTTT-GTAATTTCT-TAAAGGG-TTATTTAGTC-AATAATTA
1 TATCATATAATG-GAAAAGGGAATTTTGGTAATTT-TAT-AGGGGATTATTTAG-CAAATAATTA
* **
12873685 TAAGAGAATGGGC-TTTTTTGTAATTATGAT
62 TAAGAGAAGGGGCATTTTTCATAATTATGAT
12873715 CAAAAGCCAT
Statistics
Matches: 1258, Mismatches: 306, Indels: 157
0.73 0.18 0.09
Matches are distributed among these distances:
126 3 0.00
127 23 0.02
128 225 0.18
129 418 0.33
130 438 0.35
131 66 0.05
132 30 0.02
133 43 0.03
134 12 0.01
ACGTcount: A:0.35, C:0.08, G:0.18, T:0.38
Consensus pattern (131 bp):
TATCATATAATGGAAAAGGGAATTTTGGTAATTTTATAGGGGATTATTTAGCAAATAATTATAAG
AGAAGGGGCATTTTTCATAATTATGATGTGAGACATAATAGTCAATTTGGCCACATATAAATTTC
T
Found at i:12874865 original size:130 final size:129
Alignment explanation
Indices: 12874484--12875432 Score: 531
Period size: 129 Copynumber: 7.4 Consensus size: 129
12874474 GGCCATATAG
* * * ***
12874484 GGGATAATTTAGTAAATAATTATAAGAGAAGGGATA-TTTTAGTATTTATGATACGGGGCATAAT
1 GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTTA-TAATTATGATA-TAAG-ATAAT
* * * * * * *
12874548 -A-GTTAGTTTGACCACATTTCAATTTTTTATCATATAATGAAAAT-GTCATTTTGCTAATTT--
63 AATGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATAG-CATTTTGGTAATTTCA
12874608 TGAA
127 T-AA
* * * * * * * ***
12874612 GAGGATTATTTGGTAAATAATTATAAAAGCAGGGGCATTTTTGTAATTATGGCT-TGAGGGCCGA
1 G-GGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTTATAATTAT-GATAT-A-AGATAA
* * * * * ** *
12874676 T-A-GTCTATTTGGCTACATGTCAATTTCTTATAACATATTGGAAAGGGTATTTTGGTAATTTCA
62 TAATGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATAGCATTTTGGTAATTTCA
12874739 TAA
127 TAA
* * *
12874742 GGGATTATTTAGTAAATAATTATATGAGAAGGGGTATTTTCATAATTATAATATAAGATAATAAT
1 GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTTATAATTATGATATAAGATAATAAT
* *
12874807 AGTCAATTTGGTCACATGTCAATTTCTT-TCCATATAATGGAAATAGCATTTTAGTAATTT-ATT
66 -GTCAATTTGGCCACATGTCAATTTCTTAT-CATATAATGGAAATAGCATTTTGGTAATTTCA-T
*
12874870 GA
128 AA
* * * * * * * **
12874872 GAGATTATTTAGTAACTAAATATAAGAAAAAGGGCATTTTTATAATTATG--GT--GCATAGGCA
1 GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTTATAATTATGATATAAG-ATA-ATA
* * ** * *
12874933 AT-TC-TTTTGGCCACATGTCAATTTCTTATTATATAATCATCAAAAAGGTATTTTGGTAATTTC
64 ATGTCAATTTGGCCACATGTCAATTTCTTATCATATAAT--GGAAATA-GCATTTTGGTAATTTC
12874996 ATAA
126 ATAA
* * * *
12875000 AGG-TTATTTAGTAAACAATTATTAATGA-AA-GGCT-TTTTTGTAATTATTG-TATAAAGGCAT
1 GGGATTATTTAGTAAATAATTA-TAA-GAGAAGGGGTATTTTTATAATTA-TGATAT-AA-G-AT
* * * *
12875060 AATAAT-T-AATTTGGCCACATATCAATTTCTTATCATACAATGAAAAT-GTCATTTTAGTAATT
60 AATAATGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATAG-CATTTTGGTAATT
* *
12875122 TCTTGA
124 TCATAA
* * * * *
12875128 GGGCTTATTTAATAAATAATTATAAGAGAA-GGG-ATTGTCATAATTATGGTATGAAGGCATAAT
1 GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTTATAATTATGATAT-AA-G-ATAAT
* ** * * * * **
12875191 --TGTCCATTTAACCACATGTTAATTTCTCATCATATAA-GGAACATGGTATTTTTTTAAATTT-
63 AATGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAA-ATAGCATTTTGGT-AATTTC
*
12875252 ATAG
126 ATAA
* * * * * ****
12875256 GGGATTATTTAGTAAATAATTATAAAAGTAGGAGTATTTTTGTAATTATGATATCAGGGCGTAAT
1 GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTTATAATTATGATATAAGATAATAA-
* * ** * * * *
12875321 TTTTAATTTGATCACATATCAATTTCTTATAATATAATGGAAAAAGGCATTTTGGTAATTTCTTA
65 TGTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATA-GCATTTTGGTAATTTCATA
12875386 A
129 A
*
12875387 GGGATTATTTAGTAAATAATTATAAGAG-AGGGAGTATTTTTGTAAT
1 GGGATTATTTAGTAAATAATTATAAGAGAAGGG-GTATTTTTATAAT
12875433 GAGTTGTTAA
Statistics
Matches: 623, Mismatches: 149, Indels: 95
0.72 0.17 0.11
Matches are distributed among these distances:
125 28 0.04
126 16 0.03
127 39 0.06
128 138 0.22
129 156 0.25
130 154 0.25
131 87 0.14
132 5 0.01
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.40
Consensus pattern (129 bp):
GGGATTATTTAGTAAATAATTATAAGAGAAGGGGTATTTTTATAATTATGATATAAGATAATAAT
GTCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAATAGCATTTTGGTAATTTCATAA
Found at i:12875347 original size:258 final size:254
Alignment explanation
Indices: 12874484--12875415 Score: 834
Period size: 259 Copynumber: 3.6 Consensus size: 254
12874474 GGCCATATAG
* * * * **
12874484 GGGATAATTTAGTAAATAATTATAAGAGAAGGGATATTTTAGTATTTATGATA-CGGGGCATAAT
1 GGGATTATTTAGTAAATAATTATAAAAGAAGGG-TATTTTTGTAATTATGATATAAGGGCATAAT
* * *
12874548 AGTTAGTTTGACCACATTTCAATTTTTTATCATATAATGAAAATGTCATTTT-GCTAA-TT-TTG
65 AGTTAATTTGACCACATATCAATTTCTTATCATATAATGAAAATGTCATTTTAG-TAATTTCTTG
* * * * * *
12874610 AAGAGGATTATTTGGTAAATAATTATAAAAGCAGGGGCATTTTTGTAATTATGGCTTGAGGGCCG
129 -AG-GGATTATTTAGTAAATAATTATAAGAG-AAGGGCATTTTTATAATTATGG-TTGAAGG-CA
* * * * *
12874675 ATAGTCTATTTGGCTACATGTCAATTTCTTATAACATAT-TGGAAAGGGTATTTTGGTAATTTCA
189 ATTGTCCATTTGGCCACATGTCAATTTCTTAT--CATATAAGGAAAAGGTATTTTGGTAATTTCA
12874739 TAA
252 TAA
** ** * ***
12874742 GGGATTATTTAGTAAATAATTATATGAGAAGGGGTATTTTCATAATTATAATATAAGATAATAAT
1 GGGATTATTTAGTAAATAATTATAAAAGAA-GGGTATTTTTGTAATTATGATATAAGGGCATAAT
* ** * * *
12874807 AGTCAATTTGGTCACATGTCAATTTCTT-TCCATATAATGGAAATAG-CATTTTAGTAATTTATT
65 AGTTAATTTGACCACATATCAATTTCTTAT-CATATAATGAAAAT-GTCATTTTAGTAATTTCTT
* * * *
12874870 GAGAGATTATTTAGTAACTAAATATAAGAAAAAGGGCATTTTTATAATTATGG-TGCATAGGCAA
128 GAGGGATTATTTAGTAAATAATTATAAG-AGAAGGGCATTTTTATAATTATGGTTG-A-AGGCAA
* * **
12874934 -T-T-CTTTTGGCCACATGTCAATTTCTTATTATATAATCATCAAAAAGGTATTTTGGTAATTTC
190 TTGTCCATTTGGCCACATGTCAATTTCTTATCATAT-A--A-GGAAAAGGTATTTTGGTAATTTC
12874996 ATAA
251 ATAA
* * * * * *
12875000 AGG-TTATTTAGTAAACAATTATTAATGAAAGGCT-TTTTTGTAATTATTG-TATAAAGGCATAA
1 GGGATTATTTAGTAAATAATTATAAAAG-AAGGGTATTTTTGTAATTA-TGATATAAGGGCATAA
* * *
12875062 TAATTAATTTGGCCACATATCAATTTCTTATCATACAATGAAAATGTCATTTTAGTAATTTCTTG
64 TAGTTAATTTGACCACATATCAATTTCTTATCATATAATGAAAATGTCATTTTAGTAATTTCTTG
* * * *
12875127 AGGGCTTATTTAATAAATAATTATAAGAGAAGGG-ATTGTCATAATTATGGTATGAAGGCATAAT
129 AGGGATTATTTAGTAAATAATTATAAGAGAAGGGCATTTTTATAATTATGGT-TGAAGGC--AAT
** * * * **
12875191 TGTCCATTTAACCACATGTTAATTTCTCATCATATAAGGAACATGGTATTTTTTTAAATTT-ATA
191 TGTCCATTTGGCCACATGTCAATTTCTTATCATATAAGGAA-AAGGTATTTTGGT-AATTTCATA
*
12875255 G
254 A
* * *
12875256 GGGATTATTTAGTAAATAATTATAAAAGTAGGAGTATTTTTGTAATTATGATATCAGGGCGTAAT
1 GGGATTATTTAGTAAATAATTATAAAAGAAGG-GTATTTTTGTAATTATGATATAAGGGCATAAT
** * * * * * *
12875321 TTTTAATTTGATCACATATCAATTTCTTATAATATAATGGAAAAAGGCATTTTGGTAATTTCTTA
65 AGTTAATTTGACCACATATCAATTTCTTATCATATAAT-GAAAATGTCATTTTAGTAATTTCTTG
12875386 AGGGATTATTTAGTAAATAATTATAAGAGA
129 AGGGATTATTTAGTAAATAATTATAAGAGA
12875416 GGGAGTATTT
Statistics
Matches: 542, Mismatches: 99, Indels: 65
0.77 0.14 0.09
Matches are distributed among these distances:
253 4 0.01
254 18 0.03
255 33 0.06
256 119 0.22
257 56 0.10
258 132 0.24
259 170 0.31
260 7 0.01
261 3 0.01
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (254 bp):
GGGATTATTTAGTAAATAATTATAAAAGAAGGGTATTTTTGTAATTATGATATAAGGGCATAATA
GTTAATTTGACCACATATCAATTTCTTATCATATAATGAAAATGTCATTTTAGTAATTTCTTGAG
GGATTATTTAGTAAATAATTATAAGAGAAGGGCATTTTTATAATTATGGTTGAAGGCAATTGTCC
ATTTGGCCACATGTCAATTTCTTATCATATAAGGAAAAGGTATTTTGGTAATTTCATAA
Found at i:12875775 original size:130 final size:129
Alignment explanation
Indices: 12874479--12875834 Score: 675
Period size: 130 Copynumber: 10.4 Consensus size: 129
12874469 TATTTGGCCA
* * * * * ***
12874479 TATAGGGGATAATTTAGTAAATAATTATAAGAGAAGGGATATTTT-AGTATTTATGATA-CGGGG
1 TATAAGGGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCA-TAATTATGATATTAAGG
* * * * * *
12874542 CATAATAGTTAGTTTGACCACATTTCAATTTTTTATCATATAATGAAAATGTCATTTTGCTAATT
65 CATAATAGTTAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGCATTTTGGTAATT
* * * ** * * *
12874607 T-TGAAGAGGATTATTTGGTAAATAATTATAAAAGCAGGGGCATTTTTGTAATTATGGCT-TGAG
1 TAT-AAG-GGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCATAATTAT-GATATTAA
** * * * * * * *
12874670 GGC-CGATAGTCT-ATTTGGCTACATGTCAATTTCTTATAACATATTGGAAAGGGTATTTTGGTA
63 GGCATAATAGT-TAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGCATTTTGGTA
12874733 ATT
127 ATT
** *
12874736 TCATAAGGGATTATTTAGTAAATAATTATATGAGAAGGGGTATTTTCATAATTATAATA-TAAGA
1 T-ATAAGGGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCATAATTATGATATTAAG-
** * ** * *
12874800 TAATAATAGTCAATTTGGTCACATGTCAATTTCTT-TCCATATAATGGAAATAGCATTTTAGTAA
64 GCATAATAGTTAATTTGACCACATGTCAATTTCTTAT-CATATAATGGAAATGGCATTTTGGTAA
12874864 TT
128 TT
* * * * * * * *
12874866 TATTGAGAGATTATTTAGTAACTAAATATAAGAA-AAAGGGCATTTTTATAATTATGGTGCA-T-
1 TA-TAAGGGATTATTTAGTAAATAATTATAA-AAGAAGGGGTATTTTCATAATTATGAT--ATTA
* * ** * *
12874928 AGGC--AAT--TCT--TTTGGCCACATGTCAATTTCTTATTATATAATCATCAAAAAGGTATTTT
62 AGGCATAATAGT-TAATTTGACCACATGTCAATTTCTTATCATAT-A--ATGGAAATGGCATTTT
12874987 GGTAATT
123 GGTAATT
* * * * * * ** *
12874994 TCATAAAGG-TTATTTAGTAAACAATTATTAATGAAAGGCT-TTTTTGTAATTATTG-TATAAAG
1 T-ATAAGGGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCATAATTA-TGATATTAAG
* * * * * * *
12875056 GCATAATAATTAATTTGGCCACATATCAATTTCTTATCATACAATGAAAATGTCATTTTAGTAAT
64 GCATAATAGTTAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGCATTTTGGTAAT
12875121 T
129 T
* * * * * * * *
12875122 TCTTGAGGGCTTATTTAATAAATAATTATAAGAGAA-GGG-ATTGTCATAATTATGGTATGAAGG
1 T-ATAAGGGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCATAATTATGATATTAAGG
* ** * * * * **
12875185 CATAATTGTCCATTTAACCACATGTTAATTTCTCATCATATAA-GGAACATGGTATTTTTTTAAA
65 CATAATAGTTAATTTGACCACATGTCAATTTCTTATCATATAATGGAA-ATGGCATTTTGGT-AA
12875249 TT
128 TT
* * * ** * *
12875251 TATAGGGGATTATTTAGTAAATAATTATAAAAGTAGGAGTATTTTTGTAATTATGATATCAGGGC
1 TATAAGGGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCATAATTATGATATTAAGGC
* ** * * * *
12875316 GTAATTTTTAATTTGATCACATATCAATTTCTTATAATATAATGGAAAAAGGCATTTTGGTAATT
66 ATAATAGTTAATTTGACCACATGTCAATTTCTTATCATATAATGG-AAATGGCATTTTGGTAATT
* * ** * * * *
12875381 TCTTAAGGGATTATTTAGTAAATAATTATAAGAG-AGGGAGTATTTTTGTAATGA-GTTGTTAAA
1 T-ATAAGGGATTATTTAGTAAATAATTATAAAAGAAGGG-GTATTTTCATAATTATGATATTAAG
* * * * ** * ****
12875444 G-ATAGGATAGATAATTTTAGCATGCAACCACTTGAT-AATCTCTTTTTTTACTATCTCCTTCAT
64 GCATA--ATAGTTAA--TT----TG--ACCACATG-TCAATTTCTTATCATA-TA-AT-GGAAAT
** *
12875507 GGCCGGGTTTAG-ACACTT
115 GG-C-ATTTTGGTA-A-TT
* * * * * *
12875525 T-TGAGGGCTTATTTAGTAAATAATTATAAGAA-AAAGGGTATTGTCATAATTATGGTATGAAGG
1 TATAAGGGATTATTTAGTAAATAATTATAA-AAGAAGGGGTATTTTCATAATTATGATATTAAGG
* ** * * * * * * * **
12875588 CATAATTGTCCATTTAACCACATGTCAATTTCTCACCATACAAGGGACATGGTATTTTCTTAAAT
65 CATAATAGTTAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGCATTTTGGT-AAT
12875653 T
129 T
12875654 TATAAGGGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCATAATTATGATATTAAGGC
1 TATAAGGGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCATAATTATGATATTAAGGC
** * * * * * *
12875719 CCAATTGTTAATTTAATCACATATCAATTTCTTATAATATAATGGAAAGGGCATTTTGGTAATT
66 ATAATAGTTAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGCATTTTGGTAATT
* ** * * * **
12875783 TCTTAAAAGATTATTTAGCAAATAATTATAAGAGAAAGATTATTTTCATAAT
1 T-ATAAGGGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCATAAT
12875835 GAACTGTTAA
Statistics
Matches: 911, Mismatches: 245, Indels: 142
0.70 0.19 0.11
Matches are distributed among these distances:
124 1 0.00
125 25 0.03
126 20 0.02
127 30 0.03
128 144 0.16
129 174 0.19
130 308 0.34
131 95 0.10
132 4 0.00
133 4 0.00
134 15 0.02
136 1 0.00
137 2 0.00
139 15 0.02
140 5 0.01
141 4 0.00
142 43 0.05
143 15 0.02
144 6 0.01
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.39
Consensus pattern (129 bp):
TATAAGGGATTATTTAGTAAATAATTATAAAAGAAGGGGTATTTTCATAATTATGATATTAAGGC
ATAATAGTTAATTTGACCACATGTCAATTTCTTATCATATAATGGAAATGGCATTTTGGTAATT
Found at i:12876583 original size:130 final size:128
Alignment explanation
Indices: 12876165--12877413 Score: 460
Period size: 130 Copynumber: 9.4 Consensus size: 128
12876155 CTTATGCTAT
* * * * * * *
12876165 ATGTCAATTTCTTATCTTTTAATGGAAAAGATATTTTGGTAATTTCACAAGAGATTATTTAGTAA
1 ATGTCAATTTTTTATCATATAATGAAAAAGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAA
* * * * * * *
12876230 ATAATTATAAGATAAGGGTATTATCATAATTATGGCATGAGGGAATGATAGTTTATTTAGCCAT
66 ATAATTATAAGAAAAAGGTATTTTCATAATTATGGTATGA-GGAATAATAGTTAATTTAGCCAC
* * ** * * * *
12876294 ACGTCAATTTCTTATCATATAATGAAAGGGGTACTTTGGTAATTCCATAAGGGATTTTTTAGAAA
1 ATGTCAATTTTTTATCATATAATGAAAAAGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAA
** *
12876359 ATAATTATAAGATAAAAGGTATTTTCATAATTATGGTATGAGAGAATAATAGTCCATTTAGTCAC
66 ATAATTATAAGA-AAAAGGTATTTTCATAATTATGGTATGAG-GAATAATAGTTAATTTAGCCAC
* * * *
12876424 ATG-CCATTTTCTTATCATATAATGGAAAAGTTATTTTGGTAATTTCATAGGGGATTATTTAGTA
1 ATGTCAATTTT-TTATCATATAATGAAAAAGGTATTTTGGTAATTTCATAAGGGATTATTTAGTA
* * * * * * *
12876488 AATAATTATAAGAAAATAAGTATTTTCTTAATTATGATATAATGGCATAATTGTTAATTTGGCCA
65 AATAATTATAAGAAAA-AGGTATTTTCATAATTATGGTATGA-GGAATAATAGTTAATTTAGCCA
12876553 C
128 C
* ** * * * * *
12876554 ATGTCTATTTTTTATTGTATACTGAAAAAGGTA-TTTAGTAAACAATTGTAAGAAAAGTGA-TAT
1 ATGTCAATTTTTTATCATATAATGAAAAAGGTATTTTGGT----AATT-T--CATAAGGGATTA-
* * * ** *
12876617 TTTCGT-AATTATGATATAAAGGTAAAATA-GTACATTTGGACA-AATATCACTTTCTCATCA--
58 TTTAGTAAATAAT--TAT-AA-G-AAAA-AGGT--ATTT--TCATAAT-T-A--TGGT-ATGAGG
* *
12876677 AATAATAGGATTCACAGTTTTG-TA-
108 AATAATA-G-TT-A-A-TTTAGCCAC
* * * **
12876701 ATTTCTTAATGGATTTTTATAATGTATATCATATAATGGAAAGCGTATTTTCTTAATTTCAT-AG
1 ATGTC--AAT---TTTTTATCA--TATA--AT-GAA---AAAG-GTATTTTGGTAATTTCATAAG
* * * * * *
12876765 GGAATTATTTAGTAAATAATTTTAAGAGTAACGGTATTATCGTAATTATGGTATGAAGACATAAT
52 GG-ATTATTTAGTAAATAATTATAAGA-AAAAGGTATTTTCATAATTATGGTATGAGGA-ATAAT
***
12876830 AG-CCCTTTAAGCCAC
114 AGTTAATTT-AGCCAC
* * * * ** *
12876845 ATGTAAACTTCTTATCATATAATGAAAAAGGTATTTTGGTAATAT-ATTGTGGGATTATTGAGT-
1 ATGTCAATTTTTTATCATATAATGAAAAAGGTATTTTGGTAATTTCA-TAAGGGATTATTTAGTA
* * *** * * ** *
12876908 AATAATTATAAG-AGAAGGTATTTTCGTAATTACAATATGAGGGAATTATAATCCATTTGGCCAC
65 AATAATTATAAGAAAAAGGTATTTTCATAATTATGGTATGA-GGAATAATAGTTAATTTAGCCAC
** * ** *
12876972 ATGTCAATTTCATATTATATAATGGGAAAGGTATTTTGGTTATTTCAT-AGGAGATTATTTAGTA
1 ATGTCAATTTTTTATCATATAATGAAAAAGGTATTTTGGTAATTTCATAAGG-GATTATTTAGTA
** * * * * * *
12877036 AA-AATTTATAAGATAAGGGGTA-TTTCGTAATTATGATATGAGGGCATAGTAATCT-ATTTGGC
65 AATAA-TTATAAGA-AAAAGGTATTTTCATAATTATGGTATGA-GGAATAATAGT-TAATTTAGC
12877098 CAC
126 CAC
** * * * * * *
12877101 ATGGAAATTTATTA-CAATACAATGGAAAAAGCTATTTTGGTAATTTTATAAGTGATTGTTTAGT
1 ATGTCAATTTTTTATC-ATATAAT-GAAAAAGGTATTTTGGTAATTTCATAAGGGATTATTTAGT
* * * ** * * * *
12877165 AAATAATTATAGGAGAAGGGATATTTTCATAATTATCATAT-AAGATCATAATTGTTAATTTGGT
64 AAATAATTATAAGAAAAAGG-TATTTTCATAATTATGGTATGAGGA--ATAATAGTTAATTTAGC
12877229 CAC
126 CAC
* * ** * ** *
12877232 AAGTCAATTTCTTATTGTATAAAT-AAAAAGGCATTTTGGTAATTTC-TTTGTGGATTACTTAGT
1 ATGTCAATTTTTTATCATAT-AATGAAAAAGGTATTTTGGTAATTTCATAAG-GGATTATTTAGT
* * * * * * * **
12877295 AAATAATTATAAGAGAATGGATACTTTCATAATTATGATATAAAGGCATAATTGTCCATTT-GAC
64 AAATAATTATAAGAAAAAGG-TATTTTCATAATTATGGTAT-GAGGAATAATAGTTAATTTAG-C
*
12877359 CTC
126 CAC
* *** *
12877362 ATGCCAATTTTTTATCATATAATGGTGAGGGTAATTTT-GTAATTTCATAAGG
1 ATGTCAATTTTTTATCATATAATGAAAAAGGT-ATTTTGGTAATTTCATAAGG
12877414 ATTGTTTTAG
Statistics
Matches: 834, Mismatches: 197, Indels: 177
0.69 0.16 0.15
Matches are distributed among these distances:
126 2 0.00
127 81 0.10
128 17 0.02
129 153 0.18
130 334 0.40
131 66 0.08
132 5 0.01
133 4 0.00
134 3 0.00
135 9 0.01
136 10 0.01
137 7 0.01
138 2 0.00
139 10 0.01
140 6 0.01
141 7 0.01
142 6 0.01
143 3 0.00
144 12 0.01
145 3 0.00
146 6 0.01
147 15 0.02
148 4 0.00
149 9 0.01
150 3 0.00
151 1 0.00
152 12 0.01
153 2 0.00
154 9 0.01
155 7 0.01
156 8 0.01
157 3 0.00
158 4 0.00
160 4 0.00
161 3 0.00
162 4 0.00
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.39
Consensus pattern (128 bp):
ATGTCAATTTTTTATCATATAATGAAAAAGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAA
ATAATTATAAGAAAAAGGTATTTTCATAATTATGGTATGAGGAATAATAGTTAATTTAGCCAC
Found at i:12877584 original size:184 final size:184
Alignment explanation
Indices: 12877324--12877669 Score: 489
Period size: 184 Copynumber: 1.9 Consensus size: 184
12877314 GATACTTTCA
* * * * **
12877324 TAATTATGATATAAAGGCATAATTGTCCATTTGACCTCATGCCAATTTTTTATCATATAATGGTG
1 TAATTATGATATAAAGGCATAATTGTCAATTTGACCACATGCCAATTTCTTATAATATAATGGAA
* * * *
12877389 AGGGTAATTTTGTAATTTCATAAGG-ATTGTTTTAGTGTATATCAAATAATAGAAATGGTATTTT
66 AGGGCAATTTTGTAATTTCATAAGGAATTGTTTTAATGTAAAGCAAATAATAGAAATGGTATTTT
12877453 GATAATTTCA-AAGGGGATTATTTAGTTAATAATTAAAAATGAAGGGGTATTTTTG
131 GATAATTTCATAA-GGGATTATTTAGTT-ATAATTAAAAATGAAGGGGTATTTTTG
* ** ** *
12877508 TAATTATGGTATAAAGGTGTAATTGTCAATTTGGTCACATGTCAATTTCTTATAATATAATGGAA
1 TAATTATGATATAAAGGCATAATTGTCAATTTGACCACATGCCAATTTCTTATAATATAATGGAA
* * *
12877573 AGGGCAATTTTGTATTTTCATAAGGAATTGTTTTAATGTAAAGCAAGTAATAGAAATGGTCTTTT
66 AGGGCAATTTTGTAATTTCATAAGGAATTGTTTTAATGTAAAGCAAATAATAGAAATGGTATTTT
12877638 GATAATTTCATAAGGGATTATTTAGTTATAAT
131 GATAATTTCATAAGGGATTATTTAGTTATAAT
12877670 AGAATGGGTA
Statistics
Matches: 141, Mismatches: 19, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
184 81 0.57
185 58 0.41
186 2 0.01
ACGTcount: A:0.35, C:0.06, G:0.18, T:0.41
Consensus pattern (184 bp):
TAATTATGATATAAAGGCATAATTGTCAATTTGACCACATGCCAATTTCTTATAATATAATGGAA
AGGGCAATTTTGTAATTTCATAAGGAATTGTTTTAATGTAAAGCAAATAATAGAAATGGTATTTT
GATAATTTCATAAGGGATTATTTAGTTATAATTAAAAATGAAGGGGTATTTTTG
Found at i:12878495 original size:127 final size:128
Alignment explanation
Indices: 12877663--12878494 Score: 539
Period size: 129 Copynumber: 6.4 Consensus size: 128
12877653 GATTATTTAG
* * * * * * *
12877663 TTATAATAGAATGGGTATTTTCGTAATTATGGTATG-GAAGCATAATAGTCGATTTTGCCACATG
1 TTATAAGAGAAGGGGTATTTTCGTAATTATGATATGAG-GGCAT-ATAATCCA-TTTGGCACATG
* * * ** * * *
12877727 TTAATTGCATATCATATTTTGGAAAAA-GGTATTTTTGGTAATTTAAT-AAGAGATCATTTAATA
63 TCAATTTCTTATCATATAAT--AAAAAGGGTA-TTTTGGTAATTTTATAAAG-GATTATTTAGTA
*
12877790 AATAT
124 AATAA
* * * * * * *
12877795 TTATAAGAGAA-GGGTATTTTCATAATTATGAAATAAAGGCATCATAGTACATTTGGACACATAT
1 TTATAAGAGAAGGGGTATTTTCGTAATTATGATATGAGGGCAT-ATAATCCATTTGG-CACATGT
* * * *** * *
12877859 TACTTTCTCATC-TAATAATGGGATGGGTAGTTTT-GTAATTTTGT-AAGGATTATTTAGTAAAT
64 CAATTTCTTATCAT-ATAATAAAAAGGGTA-TTTTGGTAATTTTATAAAGGATTATTTAGTAAAT
12877921 AA
127 AA
* * *
12877923 TTATCAA-AGAAGGGGTACATTT-GTAATT-TGGTATGAGGGCATAATAGTCCATTTGGTCACAT
1 TTAT-AAGAGAAGGGGTA-TTTTCGTAATTATGATATGAGGGCAT-ATAATCCATTTGG-CACAT
* ** * * *
12877985 GTCAATTTCTTATCATCA-AATGAAAAGGGTATTTTCATAATTTAATAGAGGATTATTTAATAAA
62 GTCAATTTCTTATCAT-ATAATAAAAAGGGTATTTTGGTAATTTTATAAAGGATTATTTAGTAAA
*
12878049 CAA
126 TAA
* * * ** * * * *
12878052 TTATACGATAAGGGGTATTTTCATAATTATGATAAAAAGGTGTA-ATTATCAATTTGACTACATG
1 TTATAAGAGAAGGGGTATTTTCGTAATTATGAT-ATGAGG-GCATATAATCCATTTGGC-ACATG
* *** *
12878116 TCAATTTCCTATCATATAATGGTAAGGGTATTTTTGTAATTTT-T-AAGAGATTATTTAGTAAAT
63 TCAATTTCTTATCATATAATAAAAAGGGTATTTTGGTAATTTTATAAAG-GATTATTTAGTAAAT
12878179 AA
127 AA
* * * ** * * * *
12878181 TTATTAGAGAAGGGGTCTTTTCGCAATTATGGCATGATGGCAAAATATTCCATTTAGCTACATGT
1 TTATAAGAGAAGGGGTATTTTCGTAATTATGATATGAGGGC-ATATAATCCATTTGGC-ACATGT
* * * * * *
12878246 CAATTTCTTATCATATAATAGAAATGGCATTTTGGT-ATGTTCATAGAGGATTGTTTAGTAAATA
64 CAATTTCTTATCATATAATAAAAAGGGTATTTTGGTAAT-TTTATAAAGGATTATTTAGTAAATA
12878310 A
128 A
* * * * * * * * * *
12878311 TTATAAGTG-ATGGGCATTTTTGTCATTATGATATAAGAGAATAATAGTCTATTTGGC-CATGTC
1 TTATAAGAGAAGGGGTATTTTCGTAATTATGATATGAGGGCAT-ATAATCCATTTGGCACATGTC
*
12878374 AATTTCTTATCATATAATAAAAATGGTATTTTGGTAATTTTATAAAGGATTATTTAGTAAATAA
65 AATTTCTTATCATATAATAAAAAGGGTATTTTGGTAATTTTATAAAGGATTATTTAGTAAATAA
* * * * *
12878438 TTATAAGAGAA-AGGTATTTCCATAATTATGATACGAGGGCATATCAATCCGTTTGGC
1 TTATAAGAGAAGGGGTATTTTCGTAATTATGATATGAGGGCATAT-AATCCATTTGGC
12878495 CTGCATATGT
Statistics
Matches: 538, Mismatches: 135, Indels: 59
0.73 0.18 0.08
Matches are distributed among these distances:
126 2 0.00
127 105 0.20
128 92 0.17
129 182 0.34
130 92 0.17
131 53 0.10
132 12 0.02
ACGTcount: A:0.35, C:0.09, G:0.18, T:0.39
Consensus pattern (128 bp):
TTATAAGAGAAGGGGTATTTTCGTAATTATGATATGAGGGCATATAATCCATTTGGCACATGTCA
ATTTCTTATCATATAATAAAAAGGGTATTTTGGTAATTTTATAAAGGATTATTTAGTAAATAA
Found at i:12880134 original size:129 final size:129
Alignment explanation
Indices: 12879751--12880764 Score: 695
Period size: 129 Copynumber: 7.9 Consensus size: 129
12879741 CCATTGGACT
* * * * * *
12879751 ACATCTCAATTTCTTATCATGTAATGGAAAAGGCATTTTGGCAATTTCATA-AAGGATAATTTAG
1 ACATGTCAATTTCTTATCGTATAAT-GAAAAGGCATTTTGGTAATTTCATAGGA-GATTATTTAG
* * * * * * * * * *
12879815 TAAATAATTACAATA-AACGGGTATTTTCGTAATTATGGTATGTGAGAATTATAGTTC-ATTTGT
64 TAAATAATTATAAGAGAAAGGATATTTTTGTAATTATGATATGAGGGAATAATA-TTCAATTTGG
12879878 CC
128 CC
* * * ** *
12879880 ACATGTCAATTTTTTATCATAAAAT-AGAAAGAATATTTTGGTAATATACTATA-G-GATTATTT
1 ACATGTCAATTTCTTATCGTATAATGA-AAAG-GCATTTTGGTAAT-TTC-ATAGGAGATTATTT
* * * * * * * ** *
12879942 GGT-AACAATTATAAGTGAGAGGATATTTTTGTAATTAT-AGTATGACGAAATTATAGCCCATTT
62 AGTAAATAATTATAAGAGAAAGGATATTTTTGTAATTATGA-TATGAGGGAATAATATTCAATTT
12880005 GGCC
126 GGCC
* * * * * * *
12880009 ACACGTTAATTTCTTATCATATAATGAAAATGGCATGTAGGTAATTTTATAGGTGATTATTTAGT
1 ACATGTCAATTTCTTATCGTATAATGAAAA-GGCATTTTGGTAATTTCATAGGAGATTATTTAGT
* *
12880074 AAATAATTATAACAGAAAGGATATTTTTGTAATTATGA-ATGAGGGCATAATATTCAATTTGGCC
65 AAATAATTATAAGAGAAAGGATATTTTTGTAATTATGATATGAGGGAATAATATTCAATTTGGCC
* * * * *
12880138 ACATGTAAATTTCTTATCGTACAATGGAAAAGGTAATTTGGTAATTTCATAGGAGATTATATAGT
1 ACATGTCAATTTCTTATCGTATAAT-GAAAAGGCATTTTGGTAATTTCATAGGAGATTATTTAGT
** * * ** *
12880203 AAA-ATATTATAA-A-AGGGGCTATTTTTGTAATTATAATATGAGAAAATAAT-TGCTAATTTGG
65 AAATA-ATTATAAGAGAAAGGATATTTTTGTAATTATGATATGAGGGAATAATATTC-AATTTGG
12880264 CC
128 CC
* * * * * * * *
12880266 ACATGTCAATTTCTTATTGTATAAAAGAAAAGTCATTTTGATAACTTCTTAGAAGGTTATTTAGT
1 ACATGTCAATTTCTTATCGTAT-AATGAAAAGGCATTTTGGTAATTTCATAGGAGATTATTTAGT
* * * *** * * * * * **
12880331 AAATAATTGTAAAAGAAAGGGTATTTTAAAAAATGTGATATGATGGCAA-AATAGTCTATTCAGC
65 AAATAATTATAAGAGAAAGGATATTTTTGTAATTATGATATGA-GGGAATAATATTCAATTTGGC
12880395 C
129 C
* * * * * *
12880396 ACATGTCAATTTTTTATCTTATAAT--AAAGGATATTTTTGTAATTTCATAGGAAATTATTCAGT
1 ACATGTCAATTTCTTATCGTATAATGAAAAGG-CATTTTGGTAATTTCATAGGAGATTATTTAGT
* * * * ** * **
12880459 AAATAATTATAAGAG-AAGCGATATTATTGTAATTAAGATAAGGGGGTGTAATACTCAATTTGAT
65 AAATAATTATAAGAGAAAG-GATATTTTTGTAATTATGATATGAGGGAATAATATTCAATTTGGC
12880523 C
129 C
* * * ** *
12880524 ATATG-CAAATTTCTTATCATACAATGAAAAAGGGCATTTTGGTAATTTCATTCGACATTATTTA
1 ACATGTC-AATTTCTTATCGTATAATG-AAAA-GGCATTTTGGTAATTTCATAGGAGATTATTTA
* * ** *
12880588 GTACATAATTATAAGAGAAAGGGTATTTTCATAATTATGGTA-G-GGAGAATAATATTCAATTTG
63 GTAAATAATTATAAGAGAAAGGATATTTTTGTAATTATGATATGAGG-GAATAATATTCAATTTG
12880651 GCC
127 GCC
* ** * * *
12880654 ACATGTCAATTTCTTATTGTATAAAAAAAATGACATTTTGGTAATTTTATA-GAGGGTTATTTAG
1 ACATGTCAATTTCTTATCGTATAATGAAAA-GGCATTTTGGTAATTTCATAGGA-GATTATTTAG
* *
12880718 TAAATAATTATCAA-AGAAAGGGTATTTTCGTAATTATGATATGAGGG
64 TAAATAATTAT-AAGAGAAAGGATATTTTTGTAATTATGATATGAGGG
12880765 CTTAATAATA
Statistics
Matches: 677, Mismatches: 170, Indels: 75
0.73 0.18 0.08
Matches are distributed among these distances:
127 35 0.05
128 176 0.26
129 267 0.39
130 125 0.18
131 69 0.10
132 5 0.01
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (129 bp):
ACATGTCAATTTCTTATCGTATAATGAAAAGGCATTTTGGTAATTTCATAGGAGATTATTTAGTA
AATAATTATAAGAGAAAGGATATTTTTGTAATTATGATATGAGGGAATAATATTCAATTTGGCC
Found at i:12880296 original size:128 final size:128
Alignment explanation
Indices: 12879961--12880762 Score: 357
Period size: 128 Copynumber: 6.2 Consensus size: 128
12879951 TATAAGTGAG
* * * * * *
12879961 AGGATATTTTTGTAATTATAGTATGACGAAATTATAGCCCATTTGGCCACACGTTAATTTCTTAT
1 AGGATATTTTTGTAATTATAATATGA-GAAATAATTG-CAATTTGGCCACATGTAAATTTCTTAT
* * * * * *
12880026 CATAT-AATGAAAATGGCATGTAGGTAATTTTATAGGTGATTATTTAGTAAATAATTATAACAGA
64 CGTATAAAAGAAAA-GGAATGTAGGTAATTTCATAGGAGATTATATAGTAAATAATTATAACAGA
12880090 A
128 A
* ** *
12880091 AGGATATTTTTGTAATTATGA-ATGAGGGCATAATATTCAATTTGGCCACATGTAAATTTCTTAT
1 AGGATATTTTTGTAATTATAATATGA-GAAATAAT-TGCAATTTGGCCACATGTAAATTTCTTAT
* ** *
12880155 CGTACAATGGAAAAGGTAAT-TTGGTAATTTCATAGGAGATTATATAGTAAA-ATATTATAA-A-
64 CGTATAAAAGAAAAGG-AATGTAGGTAATTTCATAGGAGATTATATAGTAAATA-ATTATAACAG
*
12880216 AG
127 AA
* * *
12880218 GGGCTATTTTTGTAATTATAATATGAGAAAATAATTGCTAATTTGGCCACATGTCAATTTCTTAT
1 AGGATATTTTTGTAATTATAATATGAG-AAATAATTGC-AATTTGGCCACATGTAAATTTCTTAT
* ** * * * * * * * * * *
12880283 TGTATAAAAGAAAAGTCATTTTGATAACTTCTTAGAAGGTTATTTAGTAAATAATTGTAAAAGAA
64 CGTATAAAAGAAAAGGAATGTAGGTAATTTCATAGGAGATTATATAGTAAATAATTATAACAGAA
* *** * * * * * * ** * *
12880348 AGGGTATTTTAAAAAATGTGATATGATGGCAA-AATAGTCTATTCAGCCACATGTCAATTTTTTA
1 AGGATATTTTTGTAATTATAATATGA--GAAATAATTG-CAATTTGGCCACATGTAAATTTCTTA
* * * ** * *
12880412 TC-T-TATAA-TAAAGGATATTTTTGTAATTTCATAGGAAATTAT-TCAGTAAATAATTATAAGA
63 TCGTATAAAAGAAAAGGA-ATGTAGGTAATTTCATAGGAGATTATAT-AGTAAATAATTATAACA
12880473 G-A
126 GAA
* * * *** ** * *
12880475 AGCGATATTATTGTAATTA-AGATAAGGGGGTGTAATACT-CAATTTGATCATATGCAAATTTCT
1 AG-GATATTTTTGTAATTATA-AT-ATGAGAAATAAT--TGCAATTTGGCCACATGTAAATTTCT
* * * * ** * * *
12880538 TATC--ATACAATGAAAAAGGGCATTTTGGTAATTTCATTCGACATTATTTAGTACATAATTATA
61 TATCGTATA-AAAG-AAAA-GGAATGTAGGTAATTTCATAGGAGATTATATAGTAAATAATTATA
*
12880601 AGAGAA
123 ACAGAA
* ** ** * * *
12880607 AGGGTATTTTCATAATTATGGTA-GGGAGAATAATATTCAATTTGGCCACATGTCAATTTCTTAT
1 AGGATATTTTTGTAATTATAATATGAGA-AATAAT-TGCAATTTGGCCACATGTAAATTTCTTAT
* * * * * * *
12880671 TGTATAAAA-AAAATGACATTTTGGTAATTTTATA-GAGGGTTATTTAGTAAATAATTATCAA-A
64 CGTATAAAAGAAAAGGA-ATGTAGGTAATTTCATAGGA-GATTATATAGTAAATAATTAT-AACA
12880733 GAA
126 GAA
* * *
12880736 AGGGTATTTTCGTAATTATGATATGAG
1 AGGATATTTTTGTAATTATAATATGAG
12880763 GGCTTAATAA
Statistics
Matches: 505, Mismatches: 129, Indels: 76
0.71 0.18 0.11
Matches are distributed among these distances:
127 33 0.07
128 155 0.31
129 144 0.29
130 103 0.20
131 60 0.12
132 10 0.02
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (128 bp):
AGGATATTTTTGTAATTATAATATGAGAAATAATTGCAATTTGGCCACATGTAAATTTCTTATCG
TATAAAAGAAAAGGAATGTAGGTAATTTCATAGGAGATTATATAGTAAATAATTATAACAGAA
Found at i:12882111 original size:169 final size:170
Alignment explanation
Indices: 12881679--12882123 Score: 532
Period size: 170 Copynumber: 2.6 Consensus size: 170
12881669 AAATAATATG
* *
12881679 ACAATTATTTTTATTGAAATTTCATCTAAATTATTCCACCATTTGGGACAAATTTAGAGAAAATT
1 ACAATTATTGTTATTGAAATTTCATCTAAATTATTCCACCATTTGAGACAAATTTAGAGAAAATT
* *
12881744 TCTTACCTTGAGATTTCTTAGGAATTTAACATTTGAAATTTCTAAGAATCTCATCCTTGGATAAT
66 TCTTACCTAGAGATTTCTTAGGAATTTACCATTTGAAATTTCTAAGAATCTCATCCTTGGATAAT
*
12881809 TATCAAATATTTTCAACCAAAATTTTATTTGGAAAAGAAT
131 TACCAAATATTTTCAACCAAAATTTTATTTGGAAAAGAAT
* * *
12881849 ACAATTACTAG-TATTGAAATTTCATCTAAATTATTCCACCATTTGAGCCAAATTTAGAGGAAAT
1 ACAATTA-TTGTTATTGAAATTTCATCTAAATTATTCCACCATTTGAGACAAATTTAGAGAAAAT
* *
12881913 TTCTTACCTAGAGATTTCTTAGGAATTTACCATTTGAAATTTCTAAGAATTTCATCCTTGGGTTT
65 TTCTTACCTAGAGATTTCTTAGGAATTTACCATTTGAAATTTCTAAGAATCTCATCCTT-GG-AT
* * *** *
12881978 AATT-CCAAA-ATTTT-TA-TATTTTTTTGTTT-G-AAAGTAAAT
128 AATTACCAAATATTTTCAACCAAAATTTTATTTGGAAAAG--AAT
* * *
12882017 ATTAATTATTGTTATTAAAACTTT-ATCTAAATTATTCCACCATTTGAGACAAATTTAGACAAAA
1 A-CAATTATTGTTATTGAAA-TTTCATCTAAATTATTCCACCATTTGAGACAAATTTAGAGAAAA
* * * *
12882081 TTTCTCACCTA-AGAATTT-TATAGAAATTTACTAGTTGAAATTT
64 TTTCTTACCTAGAG-ATTTCT-TAGGAATTTACCATTTGAAATTT
12882124 TTATAAATTC
Statistics
Matches: 239, Mismatches: 26, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
166 4 0.02
167 1 0.00
168 17 0.07
169 84 0.35
170 121 0.51
171 7 0.03
172 5 0.02
ACGTcount: A:0.36, C:0.13, G:0.10, T:0.41
Consensus pattern (170 bp):
ACAATTATTGTTATTGAAATTTCATCTAAATTATTCCACCATTTGAGACAAATTTAGAGAAAATT
TCTTACCTAGAGATTTCTTAGGAATTTACCATTTGAAATTTCTAAGAATCTCATCCTTGGATAAT
TACCAAATATTTTCAACCAAAATTTTATTTGGAAAAGAAT
Found at i:12882270 original size:23 final size:23
Alignment explanation
Indices: 12882210--12882294 Score: 73
Period size: 23 Copynumber: 3.6 Consensus size: 23
12882200 AAATCATGTG
* *
12882210 AAAATTCCAAAAAAAATAAACACA
1 AAAATACCAAAAAAAATAAAGA-A
* **
12882234 TAAATAAAAGAAAAAAATTAATA-AA
1 AAAATACCA-AAAAAAA-TAA-AGAA
*
12882259 AAAATACCAAAAAAAATAAAGGA
1 AAAATACCAAAAAAAATAAAGAA
12882282 AAAATACCAAAAA
1 AAAATACCAAAAA
12882295 CGAAATGGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 9
0.74 0.12 0.14
Matches are distributed among these distances:
22 1 0.02
23 17 0.35
24 12 0.24
25 14 0.29
26 4 0.08
27 1 0.02
ACGTcount: A:0.74, C:0.09, G:0.04, T:0.13
Consensus pattern (23 bp):
AAAATACCAAAAAAAATAAAGAA
Found at i:12882879 original size:41 final size:42
Alignment explanation
Indices: 12882857--12883419 Score: 681
Period size: 42 Copynumber: 13.4 Consensus size: 42
12882847 AAGCTCAACG
* *
12882857 ACTTTGAAAAATAAAATGCTCCTCTAAACAGAGAC-ACCACA
1 ACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
* * * * * *
12882898 AATTTGGAAAAAGAAATTGCTCC-CTTAAACAAAAGCAACCACA
1 ACTTT-GAAAAATAAAATGCTCCTC-TAAATAGAGGCAACCACA
* *
12882941 ACTTTAGGAAAAATGAAATGCTCTTCTAAATAGAGGCAACCACA
1 ACTTT--GAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
* *
12882985 ACTTT-AGAAATAAAATGCTCCTCTAAATAGAGGCAGCCACA
1 ACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
* * *
12883026 ACTTTGGAAAATAAAATGCTCCTCTAAATTGAGGCAGCCACA
1 ACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
* *
12883068 ACTTTAGGAAAAATAAAATGCTCCTCCAAATAGAGGCAACCATA
1 ACTTT--GAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
12883112 ACTTTAGGAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
1 ACTTT--GAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
* * * *
12883156 ACTTTAAAAAATAAATTGCTCCTCTAAATGGAGGC-ACTACA
1 ACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
* * *
12883197 ACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGC-ACCACC
1 ACTTT-GAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
* *
12883239 ACTTTGAAAAATAAATTGCTCCCCTAAATAGAGGC-ACCACA
1 ACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
* *
12883280 ACTTTGGAAAATAAAATGCTCCTCTAAATAGAGGCAACCATA
1 ACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
* * *
12883322 ACTTTGGAAAATAAATTGCTCCTCTAAACAGAGGCAACCACA
1 ACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
* * *
12883364 ACTTTGGAAAATAAAATGCTCCTCTAAACAGAGGC-ACCATA
1 ACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
*
12883405 ACTTTGGAAAATAAA
1 ACTTTGAAAAATAAA
12883420 TAAAAGGCTT
Statistics
Matches: 463, Mismatches: 49, Indels: 20
0.87 0.09 0.04
Matches are distributed among these distances:
41 137 0.30
42 202 0.44
43 10 0.02
44 113 0.24
45 1 0.00
ACGTcount: A:0.43, C:0.21, G:0.14, T:0.22
Consensus pattern (42 bp):
ACTTTGAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACA
Found at i:12883420 original size:83 final size:83
Alignment explanation
Indices: 12882857--12883420 Score: 713
Period size: 83 Copynumber: 6.7 Consensus size: 83
12882847 AAGCTCAACG
* * * * *
12882857 ACTTTGAAAAATAAAATGCTCCTCTAAACAGAGACACCACAAATTTGGAAAAAGAAATTGCTCC-
1 ACTTTGGAAAATAAAATGCTCCTCTAAATAGAGGCACCACAACTTTGG-AAAATAAATTGCTCCT
* * *
12882921 CTTAAACAAAAGCAACCACA
65 C-TAAATAGAGGCAACCACA
* * * *
12882941 ACTTTAGGAAAAATGAAATGCTCTTCTAAATAGAGGCAACCACAACTTTAG-AAATAAAATGCTC
1 ACTTT-GG-AAAATAAAATGCTCCTCTAAATAGAGGC-ACCACAACTTTGGAAAATAAATTGCTC
*
12883005 CTCTAAATAGAGGCAGCCACA
63 CTCTAAATAGAGGCAACCACA
* *
12883026 ACTTTGGAAAATAAAATGCTCCTCTAAATTGAGGCAGCCACAACTTTAGGAAAAATAAAATGCTC
1 ACTTTGGAAAATAAAATGCTCCTCTAAATAGAGGCA-CCACAACTTT-GG-AAAATAAATTGCTC
* *
12883091 CTCCAAATAGAGGCAACCATA
63 CTCTAAATAGAGGCAACCACA
**
12883112 ACTTTAGGAAAAATAAAATGCTCCTCTAAATAGAGGCAACCACAACTTTAAAAAATAAATTGCTC
1 ACTTT-GG-AAAATAAAATGCTCCTCTAAATAGAGGC-ACCACAACTTTGGAAAATAAATTGCTC
* *
12883177 CTCTAAATGGAGGC-ACTACA
63 CTCTAAATAGAGGCAACCACA
* * * * *
12883197 ACTTTGGAAAAATAAATTGCTCCTCTAAACAGAGGCACCACCACTTTGAAAAATAAATTGCTCCC
1 ACTTTGG-AAAATAAAATGCTCCTCTAAATAGAGGCACCACAACTTTGGAAAATAAATTGCTCCT
12883262 CTAAATAGAGGC-ACCACA
65 CTAAATAGAGGCAACCACA
*
12883280 ACTTTGGAAAATAAAATGCTCCTCTAAATAGAGGCAACCATAACTTTGGAAAATAAATTGCTCCT
1 ACTTTGGAAAATAAAATGCTCCTCTAAATAGAGGC-ACCACAACTTTGGAAAATAAATTGCTCCT
*
12883345 CTAAACAGAGGCAACCACA
65 CTAAATAGAGGCAACCACA
* *
12883364 ACTTTGGAAAATAAAATGCTCCTCTAAACAGAGGCACCATAACTTTGGAAAATAAAT
1 ACTTTGGAAAATAAAATGCTCCTCTAAATAGAGGCACCACAACTTTGGAAAATAAAT
12883421 AAAAGGCTTA
Statistics
Matches: 424, Mismatches: 43, Indels: 27
0.86 0.09 0.05
Matches are distributed among these distances:
82 27 0.06
83 142 0.33
84 77 0.18
85 41 0.10
86 86 0.20
87 13 0.03
88 37 0.09
89 1 0.00
ACGTcount: A:0.43, C:0.21, G:0.14, T:0.22
Consensus pattern (83 bp):
ACTTTGGAAAATAAAATGCTCCTCTAAATAGAGGCACCACAACTTTGGAAAATAAATTGCTCCTC
TAAATAGAGGCAACCACA
Found at i:12883792 original size:80 final size:79
Alignment explanation
Indices: 12883695--12883870 Score: 228
Period size: 79 Copynumber: 2.2 Consensus size: 79
12883685 CATCCAAAAG
* * * *
12883695 TTCAAAGCTTCTTATTTGAGTTCAAAGGCTCACATTTGACAAATCCTAGGGTTTCACACCTCAAA
1 TTCAAAGATTCTCATTTGAGTTCAAAGACTCACATTCGACAAAT-CTAGGGTTTCACACCTCAAA
*
12883760 GATTCTCATTTGA-A
65 AATTCTCATTTGACA
* * * * * *
12883774 CTTCAAAGATTCTCATTTGAGTTCGAAGATTCTCATTCGATAAATTTCGGGTTTCACACCTCAAA
1 -TTCAAAGATTCTCATTTGAGTTCAAAGACTCACATTCGACAAATCTAGGGTTTCACACCTCAAA
12883839 AATTCTCATTTGACA
65 AATTCTCATTTGACA
12883854 TTCAAAGATTCTCATTT
1 TTCAAAGATTCTCATTT
12883871 AAGAACTCAA
Statistics
Matches: 84, Mismatches: 11, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 47 0.56
80 37 0.44
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.36
Consensus pattern (79 bp):
TTCAAAGATTCTCATTTGAGTTCAAAGACTCACATTCGACAAATCTAGGGTTTCACACCTCAAAA
ATTCTCATTTGACA
Found at i:12883804 original size:20 final size:21
Alignment explanation
Indices: 12883755--12883810 Score: 87
Period size: 21 Copynumber: 2.7 Consensus size: 21
12883745 GTTTCACACC
12883755 TCAAAGATTCTCATTTGAACT
1 TCAAAGATTCTCATTTGAACT
*
12883776 TCAAAGATTCTCATTTG-AGT
1 TCAAAGATTCTCATTTGAACT
*
12883796 TCGAAGATTCTCATT
1 TCAAAGATTCTCATT
12883811 CGATAAATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 1
0.92 0.06 0.03
Matches are distributed among these distances:
20 16 0.48
21 17 0.52
ACGTcount: A:0.30, C:0.18, G:0.12, T:0.39
Consensus pattern (21 bp):
TCAAAGATTCTCATTTGAACT
Found at i:12883886 original size:22 final size:21
Alignment explanation
Indices: 12883833--12883890 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 21
12883823 GGTTTCACAC
12883833 CTCAAAAATTCTCATTTGACA
1 CTCAAAAATTCTCATTTGACA
* *
12883854 TTCAAAGATTCTCATTTAAGA-A
1 CTCAAAAATTCTCATTT--GACA
12883876 CTCAAAAATTCTCAT
1 CTCAAAAATTCTCAT
12883891 CAAAAGATTC
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
21 15 0.48
22 14 0.45
23 2 0.06
ACGTcount: A:0.40, C:0.21, G:0.05, T:0.34
Consensus pattern (21 bp):
CTCAAAAATTCTCATTTGACA
Found at i:12885087 original size:10 final size:10
Alignment explanation
Indices: 12885048--12885088 Score: 59
Period size: 10 Copynumber: 4.3 Consensus size: 10
12885038 CATTTTTTCA
12885048 TTTTTCATTT
1 TTTTTCATTT
*
12885058 TTTTTCCTTT
1 TTTTTCATTT
12885068 TTTTTC--TT
1 TTTTTCATTT
12885076 TTTTTCATTT
1 TTTTTCATTT
12885086 TTT
1 TTT
12885089 CACCCATTAT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 8 0.29
10 20 0.71
ACGTcount: A:0.05, C:0.12, G:0.00, T:0.83
Consensus pattern (10 bp):
TTTTTCATTT
Found at i:12885089 original size:8 final size:8
Alignment explanation
Indices: 12885010--12885090 Score: 74
Period size: 8 Copynumber: 9.6 Consensus size: 8
12885000 TTTTTTTTTC
12885010 TTTCATTT
1 TTTCATTT
*
12885018 TTCCTATTT
1 TTTC-ATTT
*
12885027 TTTTATTT
1 TTTCATTT
12885035 TTTCATTT
1 TTTCATTT
12885043 TTTCA-TT
1 TTTCATTT
12885050 TTTCATTTTT
1 TTTCA--TTT
*
12885060 TTTCCTTTTT
1 TTT-C-ATTT
*
12885070 TTTCTTTT
1 TTTCATTT
12885078 TTTCATTT
1 TTTCATTT
12885086 TTTCA
1 TTTCA
12885091 CCCATTATTG
Statistics
Matches: 61, Mismatches: 6, Indels: 12
0.77 0.08 0.15
Matches are distributed among these distances:
7 7 0.11
8 35 0.57
9 7 0.11
10 11 0.18
11 1 0.02
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.77
Consensus pattern (8 bp):
TTTCATTT
Found at i:12885464 original size:24 final size:24
Alignment explanation
Indices: 12885418--12885465 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
12885408 TTGTTTGTGG
* *
12885418 CATTTTTCTTTTCTCTTTTTCTTT
1 CATTTTGCTTTTCTCTTTCTCTTT
12885442 CATTTTGCTTTTCT-TTCTCTCTTT
1 CATTTTGCTTTTCTCTT-TCTCTTT
12885466 GAGACCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 2 0.10
24 19 0.90
ACGTcount: A:0.04, C:0.23, G:0.02, T:0.71
Consensus pattern (24 bp):
CATTTTGCTTTTCTCTTTCTCTTT
Found at i:12886116 original size:17 final size:17
Alignment explanation
Indices: 12886094--12886128 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
12886084 GGTAAAGGAT
*
12886094 CTTTATTGACATCTTGC
1 CTTTATCGACATCTTGC
12886111 CTTTATCGACATCTTGC
1 CTTTATCGACATCTTGC
12886128 C
1 C
12886129 CCATGATTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.17, C:0.29, G:0.11, T:0.43
Consensus pattern (17 bp):
CTTTATCGACATCTTGC
Found at i:12888873 original size:22 final size:25
Alignment explanation
Indices: 12888848--12888894 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
12888838 CTTGACTAAG
12888848 GGTCT-CTAA-AAGAATA-GGTTCA
1 GGTCTACTAACAAGAATAGGGTTCA
*
12888870 GGTCTACTAACCAGAATAGGGTTCA
1 GGTCTACTAACAAGAATAGGGTTCA
12888895 AGAGTTCGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
22 5 0.24
23 4 0.19
24 6 0.29
25 6 0.29
ACGTcount: A:0.34, C:0.17, G:0.23, T:0.26
Consensus pattern (25 bp):
GGTCTACTAACAAGAATAGGGTTCA
Found at i:12889627 original size:10 final size:10
Alignment explanation
Indices: 12889612--12889646 Score: 61
Period size: 10 Copynumber: 3.5 Consensus size: 10
12889602 AAATTTTATA
*
12889612 TTTTTATGTT
1 TTTTTATATT
12889622 TTTTTATATT
1 TTTTTATATT
12889632 TTTTTATATT
1 TTTTTATATT
12889642 TTTTT
1 TTTTT
12889647 GTTTGAAAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.14, C:0.00, G:0.03, T:0.83
Consensus pattern (10 bp):
TTTTTATATT
Found at i:12889876 original size:25 final size:23
Alignment explanation
Indices: 12889846--12889933 Score: 86
Period size: 25 Copynumber: 3.6 Consensus size: 23
12889836 TAAATCATGC
12889846 AAAAATACTAAAAAAAAATAAACA
1 AAAAATAC-AAAAAAAAATAAACA
* * *
12889870 CATAAATAAAAGAAAAAAATTAACA
1 -AAAAATACAA-AAAAAAATAAACA
*
12889895 AAAAATACAAAAAAAAATAAAGGAA
1 AAAAATACAAAAAAAAATAAA--CA
*
12889920 AAAAATACCAAAAA
1 AAAAATACAAAAAA
12889934 CGAAACGACT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
23 10 0.19
24 10 0.19
25 32 0.62
ACGTcount: A:0.77, C:0.08, G:0.03, T:0.11
Consensus pattern (23 bp):
AAAAATACAAAAAAAAATAAACA
Found at i:12890746 original size:129 final size:129
Alignment explanation
Indices: 12890420--12891944 Score: 840
Period size: 129 Copynumber: 11.8 Consensus size: 129
12890410 ATCCATTCAA
* * * ** * *
12890420 CCACATGTCAATTTCTTATAATCTAAT-GAAAAGGGTATTTCATAATTTTAAAAGGGATTATTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAA-GGCATTTGGTAATTTCATAAGGGATTATTTA
* * * ** * ** * * * * *
12890484 GAAAAGAATGATATTAGAAATGGTATTTTCATAATTATGATA-AAAGAGCTTATTTGTCAATTTG
65 GTAAATAATTATAAGAGAAAAGGTATTTTTGTAATTATGATATGAGGA-CATAATAGTCAATTTG
*
12890548 A
129 G
* * * * *
12890549 CCACA-ATCAATTTCCTATCATATAAT--AAAAGGGCATTTTGGTAA-TT-AGTTAGTGAATATT
1 CCACATGTCAATTTCTTATCATATAATGGAAAA-GGCA-TTTGGTAATTTCA-TAAGGGATTATT
* * * * ** * *
12890609 TTGCTAAATAATTATAAGTGAAAAGGTATTTTAGAAATTATGGCATGAGGGCATAATAGTCCATT
63 TAG-TAAATAATTATAAGAGAAAAGGTATTTTTGTAATTATGATATGAGGACATAATAGTCAATT
* *
12890674 AGA
127 TGG
* * * **
12890677 CTACATCTCAATTTCTTATCATGTAATGGAAAAGGCATTTTCTAATTTCATAAGGGATTATTTAG
1 CCACATGTCAATTTCTTATCATATAATGGAAAAGGCATTTGGTAATTTCATAAGGGATTATTTAG
* * ** ** * * * * **
12890742 TAAATAATTACAAGA-TACGGGTATTTTCATAATTATGGTATGAGAAAATTATAGTTC-ATTTAT
66 TAAATAATTATAAGAGAAAAGGTATTTTTGTAATTATGATATGAGGACATAATAG-TCAATTTGG
* * * * *
12890805 CCACATGTCAATTTTTTATCATAAAATGG-AAAGAGTATTTGGTAATAT-ACTATGGGATTATTT
1 CCACATGTCAATTTCTTATCATATAATGGAAAAG-GCATTTGGTAATTTCA-TAAGGGATTATTT
* * * * *
12890868 GGT--ATCAATTATAAGTG-AAAGGATATTTTTGTAATTAT-AGTATGATGGA-ATTATAGCCTA
64 AGTAAAT-AATTATAAGAGAAAAGG-TATTTTTGTAATTATGA-TATGA-GGACATAATAGTCAA
12890928 TTTGG
125 TTTGG
*
12890933 CCACATGTTAATTTCTTATCATATAAT-GAAAATGGCATGTTGGTAATTTCAT-AGGTGATTATT
1 CCACATGTCAATTTCTTATCATATAATGGAAAA-GGCAT-TTGGTAATTTCATAAGG-GATTATT
* * * * * * *
12890996 TAGTAGATAATTATAACA-TAAGGGATACTTTTGTAATTATGA-ATGAGGGCATAATATTCAATT
63 TAGTAAATAATTATAAGAGAAAAGG-TATTTTTGTAATTATGATATGAGGACATAATAGTCAATT
12891059 TGG
127 TGG
* * * * * *
12891062 CCACATGTAAATTTCTTATCGTACAATGG-AAAGTGTAATTTGGTAATTTTATAAGAGATTATTT
1 CCACATGTCAATTTCTTATCATATAATGGAAAAG-G-CATTTGGTAATTTCATAAGGGATTATTT
* ** * * *
12891126 AGTAACA-AATTATAAAAGAAGGGGTATTTTTGTAATTATAATATGAGGAAATAATTG-CTAATT
64 AGTAA-ATAATTATAAGAGAAAAGGTATTTTTGTAATTATGATATGAGGACATAATAGTC-AATT
12891189 TGG
127 TGG
* * * * *
12891192 CCACATGTCAATTTCTTAT-AGTATAAAGGAAAAGGCATTTCGATAACTTCTTAAGGGGTTATTT
1 CCACATGTCAATTTCTTATCA-TATAATGGAAAAGGCATTT-GGTAATTTCATAAGGGATTATTT
* * *** * * * * * *
12891256 AGTAAATAATTATAAAAGAAAATGGTGTTTTCAAAAATGTGATATGATGACAAAATAGTCTATTC
64 AGTAAATAATTATAAGAGAAAA-GGTATTTTTGTAATTATGATATGAGGACATAATAGTCAATTT
*
12891321 AG
128 GG
* * * * * ** *
12891323 CCACATGTCAATTTTTTATCACATAAT--AGAGGGTATTTTCATAATTTCATTAGGGATTATTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAAGGCA-TTTGGTAATTTCATAAGGGATTATTTA
* * ** * * * * *
12891386 GTAAATAGTTATAAGAGGAGTGATATTTTTGTAATTAAGATAAGATGG-CGTAATACTCAATTTG
65 GTAAATAATTATAAGAGAAAAGGTATTTTTGTAATTATGATATGA-GGACATAATAGTCAATTTG
12891450 G
129 G
* * * * * * * *
12891451 TCATATGTAAATTTCTTATCATACAATAGAAAGGGCATTTGGGTAATTTCATTAGAGATTATTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAAGGCATTT-GGTAATTTCATAAGGGATTATTTA
* *
12891516 GTAAATAATTATAAGA-AAAGAGGTATTTTTGTAATTATGATATGAAGACATAATTGTCAATTTG
65 GTAAATAATTATAAGAGAAA-AGGTATTTTTGTAATTATGATATGAGGACATAATAGTCAATTTG
12891580 G
129 G
** ** * * *
12891581 CCTTATGTCAATTTCTTATTGTATAAAGGAAATGGCATTTTGGTAATTTTATAAGGG-TTATTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAAGGCA-TTTGGTAATTTCATAAGGGATTATTTA
* * * * *
12891645 GTAAATAATTATTAGAG-AAAGAGTATTTTCGTAATTATGATATGAAGG-CTTAATAAT-ACTTT
65 GTAAATAATTATAAGAGAAAAG-GTATTTTTGTAATTATGATATG-AGGACATAATAGTCA-ATT
12891707 TGG
127 TGG
* * * ** * * * ** * ** * *
12891710 ACAGATGTTACCTTCTCATCAAATAATGGGATCGGTAGTATT-GTAATTTTGTAAAGGA-TATTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAAGGCA-T-TTGGTAATTTCATAAGGGATTATTT
* * * ** ** * * *
12891773 AGTAAATCACTATAAAAG-ATTGTGTATTTTCATAATT-TTATATGGGGACATAATATTTC-ATT
64 AGTAAATAATTATAAGAGAAAAG-GTATTTTTGTAATTATGATATGAGGACATAATA-GTCAATT
*
12891835 CGG
127 TGG
* * * *** * *
12891838 CCATATGTCAATTTCTTATCATACAATGGAAAGGGCATTTTCAAAATTTCACAAGAGATTATTTA
1 CCACATGTCAATTTCTTATCATATAATGGAAAAGGCA-TTTGGTAATTTCATAAGGGATTATTTA
* * * **
12891903 GTAAAGAATTATAAGA-AAAGTGGTACTTTCATAATTATGATA
65 GTAAATAATTATAAGAGAAA-AGGTATTTTTGTAATTATGATA
12891945 AAATGGCATT
Statistics
Matches: 1058, Mismatches: 273, Indels: 129
0.72 0.19 0.09
Matches are distributed among these distances:
126 3 0.00
127 42 0.04
128 312 0.29
129 370 0.35
130 264 0.25
131 65 0.06
132 2 0.00
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (129 bp):
CCACATGTCAATTTCTTATCATATAATGGAAAAGGCATTTGGTAATTTCATAAGGGATTATTTAG
TAAATAATTATAAGAGAAAAGGTATTTTTGTAATTATGATATGAGGACATAATAGTCAATTTGG
Found at i:12890816 original size:128 final size:129
Alignment explanation
Indices: 12890540--12891682 Score: 700
Period size: 130 Copynumber: 8.9 Consensus size: 129
12890530 AGCTTATTTG
* * * *
12890540 TCAATTTGACCACA-ATCAATTTCCTATCATATAAT--AAAAGGGCATTTTGGTAA-TT-AGTTA
1 TCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAA-GGCA-TTTGGTAATTTCA-TAA
* * * * * * * * **
12890600 GTGAATATTTTGCTAAATAATTATAAG-TGAAAAGGTATTTTAGAAATTATGGCATGAGGGCATA
63 GGGATTATTTAG-TAAATAATTATAAGAT--AAGGGTATTTTTGTAATTATAGTATGAGGAAATA
12890664 ATAG-
125 ATAGT
* * * * * * **
12890668 TCCATTAGACTACATCTCAATTTCTTATCATGTAATGGAAAAGGCATTTTCTAATTTCATAAGGG
1 TCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATTTGGTAATTTCATAAGGG
* * ** * * *
12890733 ATTATTTAGTAAATAATTACAAGATACGGGTATTTTCATAATTATGGTATGAGAAAATTATAGT
66 ATTATTTAGTAAATAATTATAAGATAAGGGTATTTTTGTAATTATAGTATGAGGAAATAATAGT
** * * * * *
12890797 TC-ATTTATCCACATGTCAATTTTTTATCATAAAATGG-AAAGAGTATTTGGTAATAT-ACTATG
1 TCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAG-GCATTTGGTAATTTCA-TAAG
* * *
12890859 GGATTATTTGGT--ATCAATTATAAG-TGAAAGGATATTTTTGTAATTATAGTATGATGG-AATT
64 GGATTATTTAGTAAAT-AATTATAAGAT--AAGGGTATTTTTGTAATTATAGTATGA-GGAAATA
12890920 ATAG-
125 ATAGT
* * *
12890924 CCTATTTGGCCACATGTTAATTTCTTATCATATAAT-GAAAATGGCATGTTGGTAATTTCAT-AG
1 TCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAA-GGCAT-TTGGTAATTTCATAAG
* * * * **
12890987 GTGATTATTTAGTAGATAATTATAACATAAGGGATACTTTTGTAATTAT-GAATGAGGGCATAAT
64 G-GATTATTTAGTAAATAATTATAAGATAAGGG-TATTTTTGTAATTATAGTATGAGGAAATAAT
12891051 A-T
127 AGT
* * * * *
12891053 TCAATTTGGCCACATGTAAATTTCTTATCGTACAATGG-AAAGTGTAATTTGGTAATTTTATAAG
1 TCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAG-G-CATTTGGTAATTTCATAAG
* * * *
12891117 AGATTATTTAGTAACA-AATTATAAAAGAAGGGGTATTTTTGTAATTATAATATGAGGAAATAAT
64 GGATTATTTAGTAA-ATAATTATAAGATAA-GGGTATTTTTGTAATTATAGTATGAGGAAATAAT
* *
12891181 TGC
127 AGT
* * * *
12891184 T-AATTTGGCCACATGTCAATTTCTTAT-AGTATAAAGGAAAAGGCATTTCGATAACTTCTTAAG
1 TCAATTTGGCCACATGTCAATTTCTTATCA-TATAATGGAAAAGGCATTT-GGTAATTTCATAAG
* * * * *** * * *
12891247 GGGTTATTTAGTAAATAATTATAAAAGAAAATGGTGTTTTCAAAAATGT-GATATGATGACAA-A
64 GGATTATTTAGTAAATAATTAT--AAGATAAGGGTATTTTTGTAATTATAG-TATGAGGA-AATA
12891310 ATAG-
125 ATAGT
* ** * * * * * ** *
12891314 TCTATTCAGCCACATGTCAATTTTTTATCACATAAT--AGAGGGTATTTTCATAATTTCATTAGG
1 TCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCA-TTTGGTAATTTCATAAGG
* ** * * **
12891377 GATTATTTAGTAAATAGTTATAAGAGGAGTGATATTTTTGTAATTA-AGATAAGATGG-CGTAAT
65 GATTATTTAGTAAATAATTATAAGATAAG-GGTATTTTTGTAATTATAG-TATGA-GGAAATAAT
*
12891440 A-C
127 AGT
* * * * * * * *
12891442 TCAATTTGGTCATATGTAAATTTCTTATCATACAATAGAAAGGGCATTTGGGTAATTTCATTAGA
1 TCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATTT-GGTAATTTCATAAGG
* * * *
12891507 GATTATTTAGTAAATAATTATAAGAAAAGAGGTATTTTTGTAATTAT-GATATGAAGACATAATT
65 GATTATTTAGTAAATAATTATAAGATAAG-GGTATTTTTGTAATTATAG-TATGAGGAAATAATA
12891571 G-
128 GT
** ** * * *
12891572 TCAATTTGGCCTTATGTCAATTTCTTATTGTATAAAGGAAATGGCATTTTGGTAATTTTATAAGG
1 TCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCA-TTTGGTAATTTCATAAGG
* *
12891637 G-TTATTTAGTAAATAATTATTAGAGA-AAGAGTATTTTCGTAATTAT
65 GATTATTTAGTAAATAATTA-TA-AGATAAGGGTATTTTTGTAATTAT
12891683 GATATGAAGG
Statistics
Matches: 790, Mismatches: 167, Indels: 115
0.74 0.16 0.11
Matches are distributed among these distances:
126 3 0.00
127 20 0.03
128 205 0.26
129 237 0.30
130 250 0.32
131 67 0.08
132 8 0.01
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (129 bp):
TCAATTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATTTGGTAATTTCATAAGGG
ATTATTTAGTAAATAATTATAAGATAAGGGTATTTTTGTAATTATAGTATGAGGAAATAATAGT
Found at i:12890848 original size:257 final size:257
Alignment explanation
Indices: 12890618--12891109 Score: 543
Period size: 257 Copynumber: 1.9 Consensus size: 257
12890608 TTTGCTAAAT
* * *
12890618 AATTATAAGTGAAAAGG-TATTTTAGAAATTATGGCATGAGGGCATAATAGTCC-ATTAGACTAC
1 AATTATAAGTG-AAAGGATATTTTAGAAATTATAGCATGAGGGAATAATAG-CCTATTAGACCAC
* *
12890681 ATCTCAATTTCTTATCATGTAATGGAAAA-GGCAT-TTTCTAATTTCATAAGG-GATTATTTAGT
64 ATCTCAATTTCTTATCATATAAT-GAAAATGGCATGTTGCTAATTTCAT-AGGTGATTATTTAGT
* * * * *
12890743 AAATAATTACAAGATACGGG-TA-TTTTCATAATTATGGTATGAGAAAATTATAGTTC-ATTTAT
127 AAATAATTACAACATAAGGGATACTTTT-ATAATTAT-GAATGAGAAAATAATA-TTCAATTTAG
* * *
12890805 CCACATGTCAATTTTTTATCATAAAATGGAAAGAGT-ATTTGGTAATATACTATGGGATTATTTG
189 CCACATGTAAATTTCTTATCATAAAATGGAAAGAGTAATTTGGTAAT-TACTATGGGAATATTTG
*
12890869 GTATC
253 CTATC
* * * * * * *
12890874 AATTATAAGTGAAAGGATATTTTTGTAATTATAGTATGATGGAATTATAGCCTATTTGGCCACAT
1 AATTATAAGTGAAAGGATATTTTAGAAATTATAGCATGAGGGAATAATAGCCTATTAGACCACAT
* * * *
12890939 GTTAATTTCTTATCATATAATGAAAATGGCATGTTGGTAATTTCATAGGTGATTATTTAGTAGAT
66 CTCAATTTCTTATCATATAATGAAAATGGCATGTTGCTAATTTCATAGGTGATTATTTAGTAAAT
* * *** *
12891004 AATTATAACATAAGGGATACTTTTGTAATTATGAATGAGGGCATAATATTCAATTTGGCCACATG
131 AATTACAACATAAGGGATACTTTTATAATTATGAATGAGAAAATAATATTCAATTTAGCCACATG
* * *
12891069 TAAATTTCTTATCGTACAATGGAAAGTGTAATTTGGTAATT
196 TAAATTTCTTATCATAAAATGGAAAGAGTAATTTGGTAATT
12891110 TTATAAGAGA
Statistics
Matches: 195, Mismatches: 32, Indels: 17
0.80 0.13 0.07
Matches are distributed among these distances:
255 12 0.06
256 75 0.38
257 85 0.44
258 19 0.10
259 4 0.02
ACGTcount: A:0.36, C:0.09, G:0.17, T:0.38
Consensus pattern (257 bp):
AATTATAAGTGAAAGGATATTTTAGAAATTATAGCATGAGGGAATAATAGCCTATTAGACCACAT
CTCAATTTCTTATCATATAATGAAAATGGCATGTTGCTAATTTCATAGGTGATTATTTAGTAAAT
AATTACAACATAAGGGATACTTTTATAATTATGAATGAGAAAATAATATTCAATTTAGCCACATG
TAAATTTCTTATCATAAAATGGAAAGAGTAATTTGGTAATTACTATGGGAATATTTGCTATC
Found at i:12891208 original size:259 final size:258
Alignment explanation
Indices: 12890420--12891689 Score: 873
Period size: 259 Copynumber: 4.9 Consensus size: 258
12890410 ATCCATTCAA
* * * * * *
12890420 CCACATGTCAATTTCTTATAATCTAATGAAAAGGGTATTTC-ATAATTTTAAAAGGGATTATTTA
1 CCACATGTCAATTTCTTATCATATAATGAAAA-GGCATTTCGGTAATTTCATAAGGGATTATTTA
* * * * * * * *
12890484 GAAAAGAATGATATTAG-AAATGGTATTTTCATAATTATGATA-AAAGAGC-TTATTTGTCAATT
65 GTAAATAAT--TATAAGAAAAGGGTATTTTCATAATTATGATATGAGGA-CATAATAT-TCAATT
* * * * * * * * *
12890546 T-GACCACA-ATCAATTTCCTATCATATAAT-AAAAGGGCATTTTGGTAA--TTAGTTAGTGAAT
126 TAG-CCACATGTCAATTTCTTATCATATAATGGAAAGTGTAATTTGGTAATTTTA-TAAGGGATT
* * * * *** * * *
12890606 ATTTTGCTAAATAATTATAAGTGAAAAGG-TATTTTAGAAATTATGGCATGAGGGCATAATAG-T
189 ATTTAG-TAAATAATTATAAGAG-AAAGGATATTTTTGTAATTATAATATGATGGAATAATTGCT
* * *
12890669 CCATTAGA
252 -AATTTGG
* * *
12890677 CTACATCTCAATTTCTTATCATGTAATGGAAAAGGCATTTTC--TAATTTCATAAGGGATTATTT
1 CCACATGTCAATTTCTTATCATATAAT-GAAAAGGCA-TTTCGGTAATTTCATAAGGGATTATTT
* * * * * * *
12890740 AGTAAATAATTACAAGATACGGGTATTTTCATAATTATGGTATGAGAAAATTATAGTTC-ATTTA
64 AGTAAATAATTATAAGAAAAGGGTATTTTCATAATTATGATATGAGGACATAATA-TTCAATTTA
* * * * * *
12890804 TCCACATGTCAATTTTTTATCATAAAATGGAAAGAGT-ATTTGGTAA-TATACTATGGGATTATT
128 GCCACATGTCAATTTCTTATCATATAATGGAAAGTGTAATTTGGTAATTTTA-TAAGGGATTATT
* * * * *
12890867 TGGT--ATCAATTATAAGTGAAAGGATATTTTTGTAATTATAGTATGATGGAATTATAGCCT-AT
192 TAGTAAAT-AATTATAAGAGAAAGGATATTTTTGTAATTATAATATGATGGAATAATTG-CTAAT
12890929 TTGG
255 TTGG
*
12890933 CCACATGTTAATTTCTTATCATATAATGAAAATGGCATGTT-GGTAATTTCAT-AGGTGATTATT
1 CCACATGTCAATTTCTTATCATATAATGAAAA-GGCAT-TTCGGTAATTTCATAAGG-GATTATT
* * * * *
12890996 TAGTAGATAATTATAACATAAGGGATACTTTT-GTAATTATGA-ATGAGGGCATAATATTCAATT
63 TAGTAAATAATTATAAGAAAAGGG-TA-TTTTCATAATTATGATATGAGGACATAATATTCAATT
* * * * *
12891059 TGGCCACATGTAAATTTCTTATCGTACAATGGAAAGTGTAATTTGGTAATTTTATAAGAGATTAT
126 TAGCCACATGTCAATTTCTTATCATATAATGGAAAGTGTAATTTGGTAATTTTATAAGGGATTAT
* * *
12891124 TTAGTAACA-AATTATAAAAGAAGGGGTATTTTTGTAATTATAATATGA-GGAAATAATTGCTAA
191 TTAGTAA-ATAATTATAAGAGAAAGGATATTTTTGTAATTATAATATGATGG-AATAATTGCTAA
12891187 TTTGG
254 TTTGG
* * * * *
12891192 CCACATGTCAATTTCTTAT-AGTATAAAGGAAAAGGCATTTCGATAACTTCTTAAGGGGTTATTT
1 CCACATGTCAATTTCTTATCA-TAT-AATGAAAAGGCATTTCGGTAATTTCATAAGGGATTATTT
* * * * * * * * * *
12891256 AGTAAATAATTATAAAAGAAAATGGTGTTTTCAAAAATGTGATATGATGACAAAATAGTCTATTC
64 AGTAAATAATTAT--AAGAAAAGGGTATTTTCATAATTATGATATGAGGACATAATATTCAATTT
* * * * * ** * *
12891321 AGCCACATGTCAATTTTTTATCACATAAT--AGAGGGTATTTTCATAATTTCATTAGGGATTATT
127 AGCCACATGTCAATTTCTTATCATATAATGGAAAGTGTAATTTGGTAATTTTATAAGGGATTATT
* * * ** *
12891384 TAGTAAATAGTTATAAGAG-GAGTGATATTTTTGTAATTA-AGATAAGATGGCGTAA-TACTCAA
192 TAGTAAATAATTATAAGAGAAAG-GATATTTTTGTAATTATA-ATATGATGGAATAATTGCT-AA
12891446 TTTGG
254 TTTGG
* * * * * * * *
12891451 TCATATGTAAATTTCTTATCATACAATAGAAAGGGCATTTGGGTAATTTCATTAGAGATTATTTA
1 CCACATGTCAATTTCTTATCATATAAT-GAAAAGGCATTTCGGTAATTTCATAAGGGATTATTTA
** * *
12891516 GTAAATAATTATAAGAAAAGAGGTATTTTTGTAATTATGATATGAAGACATAAT-TGTCAATTTG
65 GTAAATAATTATAAGAAAAG-GGTATTTTCATAATTATGATATGAGGACATAATAT-TCAATTTA
** ** * * *
12891580 GCCTTATGTCAATTTCTTATTGTATAAAGGAAA-TGGCATTTTGGTAATTTTATAAGGG-TTATT
128 GCCACATGTCAATTTCTTATCATATAATGGAAAGT-GTAATTTGGTAATTTTATAAGGGATTATT
* * *
12891643 TAGTAAATAATTATTAGAGAAA-GAGTATTTTCGTAATTATGATATGA
192 TAGTAAATAATTATAAGAGAAAGGA-TATTTTTGTAATTATAATATGA
12891690 AGGCTTAATA
Statistics
Matches: 794, Mismatches: 167, Indels: 102
0.75 0.16 0.10
Matches are distributed among these distances:
255 17 0.02
256 106 0.13
257 175 0.22
258 128 0.16
259 280 0.35
260 41 0.05
261 47 0.06
ACGTcount: A:0.37, C:0.08, G:0.17, T:0.38
Consensus pattern (258 bp):
CCACATGTCAATTTCTTATCATATAATGAAAAGGCATTTCGGTAATTTCATAAGGGATTATTTAG
TAAATAATTATAAGAAAAGGGTATTTTCATAATTATGATATGAGGACATAATATTCAATTTAGCC
ACATGTCAATTTCTTATCATATAATGGAAAGTGTAATTTGGTAATTTTATAAGGGATTATTTAGT
AAATAATTATAAGAGAAAGGATATTTTTGTAATTATAATATGATGGAATAATTGCTAATTTGG
Found at i:12892421 original size:129 final size:128
Alignment explanation
Indices: 12892160--12893620 Score: 632
Period size: 129 Copynumber: 11.3 Consensus size: 128
12892150 TAATAGTTCT
* * * * * * *
12892160 TTTGTCCACATGTCAATTTCTTATCATATAAT-GAAATGGGTATTTTGGTAATATAATATGAGAT
1 TTTGGCCACATGTCAATTTCTTATCATATAATGGAAA-AGGCATGTTGGTAATTTCATA-GGGAT
* * *** * * ** * * ****
12892224 TATTTTGT-AACAATTATAAGTGAAAGGATATTTTCATAATTATGGTAAGTGGGAATTATAGCCC
64 TATTTAGTAAATAATTATAAAAAAAAGG-TATTTTCATAATTATGATATGAAGGCATAATATTAA
12892288 A
128 A
* ** *
12892289 TTTGGCCACATGTCAATTTCTTATCATATAATGGAAATGTTATGTTAGTAATTTCAT-GGATGAT
1 TTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATGTTGGTAATTTCATAGG--GAT
**
12892353 TATTTAGTAAATAATTATAACAAAAAAGGTATTTTTGTAATTATGA-ATGAAGGCATAATATTAA
64 TATTTAGTAAATAATTATAA-AAAAAAGGTATTTTCATAATTATGATATGAAGGCATAATATTAA
12892417 A
128 A
** * * *
12892418 TTTGGTGACATGTAAATTTCTTATCATATAAT-AAAAAGGGCATTTTGGTAATTTCATAAGGGAT
1 TTTGGCCACATGTCAATTTCTTATCATATAATGGAAAA-GGCATGTTGGTAATTTCAT-AGGGAT
* ** * *
12892482 TATTTAGTAAAGAATTATAAAAGAAGGGGTATTTTCATAATTATGATATGAGGGAATAATTATT-
64 TATTTAGTAAATAATTATAAAA-AAAAGGTATTTTCATAATTATGATATGAAGGCATAA-TATTA
12892546 AA
127 AA
** * * * * ** *
12892548 TTTGGCCACATGTCAATTTCTTATTGTGTAAAGGAAAAGGCATTTTGCTAGCTTCATAGGGGGTT
1 TTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATGTTGGTAATTTCATA-GGGATT
* * * * * * *
12892613 ATTTAGTAAATAATTATAAAAGAATAGCTATTTTCAAAAATATGATATGATGGCATAATAGTATA
65 ATTTAGTAAATAATTATAAAA-AAAAGGTATTTTCATAATTATGATATGAAGGCATAATATTAAA
* * * * *
12892678 -TT-GCCTACATGTCAATTTCCTATCGTATAATGAAAAAGGTATGTTCGTAATTTCATTAGGGAT
1 TTTGGCC-ACATGTCAATTTCTTATCATATAATGGAAAAGGCATGTTGGTAATTTCA-TAGGGAT
* * * * ** ** * * *
12892741 TATTCAATAATTAATTGTAAGAAAAGTGGTATTTTTGTAATTATGATAAG-GGGCATAAT-TATC
64 TATTTAGTAAATAATTATAA-AAAAAAGGTATTTTCATAATTATGATATGAAGGCATAATAT-TA
12892804 AA
127 AA
* * * ** * *
12892806 TTTGGCCACATGTCAATTTCTTATTC-TATAAAGGAAAGGGCATTTTGGTAATTTTGTTGAAGAT
1 TTTGGCCACATGTCAATTTCTTA-TCATATAATGGAAAAGGCATGTTGGTAATTTCATAG-GGAT
* ** * * *
12892870 TATTTTGTAAATAATTATAGGAGAAGGGTTATTTTCATAATTATGATATGAGGGCATAAT-TGTA
64 TATTTAGTAAATAATTATAAAAAAAAGG-TATTTTCATAATTATGATATGAAGGCATAATAT-TA
12892934 AA
127 AA
** * * *
12892936 TTTGG-CACATGTCAACTTT-TTATTGTATAAAGGAAAGGGCAT-TTAGGTAATTTCTTAAAGGG
1 TTTGGCCACATGTCAA-TTTCTTATCATATAATGGAAAAGGCATGTT-GGTAATTTC--ATAGGG
* * * ** * *
12892998 -TTATTTTGTTAATAATTATAAAAGAAGAGGTATTTTCATAATTAAAATAT-AATGGTATAATAG
62 ATTATTTAGTAAATAATTATAAAA-AAAAGGTATTTTCATAATTATGATATGAA-GGCATAATAT
*
12893061 TATA
125 TAAA
* * * * * * * * ** * * ** * *
12893065 TTTGGACACATATTACTTTCTCAT-AAATTATGGGATGGGTA-GTTTTGTAATTTTGTAAGGTTT
1 TTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATG-TTGGTAATTTCATAGGGATT
* ** * * *
12893128 ATTTAGTAAATAATTAT--AAAAAGGGATATTTTTGTAATTATG-T-TCAAAGGGCATAATAGTC
65 ATTTAGTAAATAATTATAAAAAAAAGG-TATTTTCATAATTATGATAT-GAA-GGCATAATATTA
*
12893189 CA
127 AA
*** * * * ** * ** **
12893191 TTCAACCACGTGTCAATTTCTTATCATCTAATGGAAATGATATTTTCATAATTTCATAAGAAATT
1 TTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATGTTGGTAATTTCAT-AGGGATT
** * * *
12893256 ATTTAGTAAATAATTATAAGAGTAGAGGTATTTTTATAATTATGATA--AAGTGGCATAACT-GT
65 ATTTAGTAAATAATTATAA-AAAAAAGGTATTTTCATAATTATGATATGAA--GGCATAA-TATT
*
12893318 CAA
126 AAA
** * ** * * * * * * *
12893321 TTTAACAACATAAC-ATTTCTTATCCTATTATGAAAAAGACATTTTGGTAATTTCTTATGGAATT
1 TTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATGTTGGTAATTTCATA-GGGATT
* * * * *** * *
12893385 GTTTAGTAAAAAATTATAGGAGATTGGGTACTTTT-GTAATTATGATAT-ATGGGCATAAT-TGT
65 ATTTAGTAAATAATTATA-AAAAAAAGGTA-TTTTCATAATTATGATATGA-AGGCATAATAT-T
**
12893447 CCA
126 AAA
* * * * ** *
12893450 TTT-GACATCATGTCAATTTCTTATTATATAAT-GAAAATGGCATTTTAGTAATTTTTTATGGAT
1 TTTGGCCA-CATGTCAATTTCTTATCATATAATGGAAAA-GGCATGTTGGTAATTTCATAGGGAT
* ** * * *
12893513 TATTTAGTAAATAATTATAATAGAATGGGTACTTTT-GTAATTATGGTATG-AGAGCATAATAGT
64 TATTTAGTAAATAATTATAA-AAAAAAGGTA-TTTTCATAATTATGATATGAAG-GCATAATATT
**
12893576 CCA
126 AAA
*** * * * *
12893579 TTTAATCATATATCAATTTCTTATCATATAATCGAAATGGCA
1 TTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCA
12893621 GTTTTGTAAT
Statistics
Matches: 1019, Mismatches: 248, Indels: 130
0.73 0.18 0.09
Matches are distributed among these distances:
124 1 0.00
125 5 0.00
126 42 0.04
127 23 0.02
128 69 0.07
129 597 0.59
130 260 0.26
131 22 0.02
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (128 bp):
TTTGGCCACATGTCAATTTCTTATCATATAATGGAAAAGGCATGTTGGTAATTTCATAGGGATTA
TTTAGTAAATAATTATAAAAAAAAGGTATTTTCATAATTATGATATGAAGGCATAATATTAAA
Found at i:12892690 original size:388 final size:386
Alignment explanation
Indices: 12892296--12893066 Score: 948
Period size: 388 Copynumber: 2.0 Consensus size: 386
12892286 CCATTTGGCC
* * * * *
12892296 ACATGTCAATTTCTTATCATATAATGGAAATGTTATGTTAGTAATTTCA-T-GGATGATTATTTA
1 ACATGTCAATTTCCTATCATATAATGAAAAAGGTATGTTAGTAATTTCATTAGG--GATTATTCA
*
12892359 GTAAATAATTATAACAAAAAAGGTATTTTTGTAATTATGAATGAA-GGCATAA-TATTAAATTTG
64 ATAAATAATTATAACAAAAAAGGTATTTTTGTAATTATG-AT-AAGGGCATAATTA-TAAATTTG
**
12892422 GTGACATGTAAATTTCTTA-TCATATAATA-AAAAGGGCATTTTGGTAA-TTTCAT-AAGGGATT
126 GCCACATGTAAATTTCTTATTC-TATAA-AGAAAAGGGCATTTTGGTAATTTTCATGAA--GATT
*
12892483 ATTTAGTAAAGAATTATAAAAGAAGGGGTATTTTCATAATTATGATATGAGGGAATAATTATTAA
187 ATTTAGTAAAGAATTATAAAAGAAGGGGTATTTTCATAATTATGATATGAGGGAATAATTATAAA
* * * **
12892548 TTTGGCCACATGTCAA-TTTCTTATTGTGTAAAGGAAAAGGCATTTTGCTAGCTTCATAGGGGGT
252 TTTGG-CACATGTCAACTTT-TTATTGTATAAAGGAAAAGGCATTTAGCTAACTTCATAAAGGGT
* ** *
12892612 TATTTAGTAAATAATTATAAAAGAATAGCTATTTTCAAAAATATGATATGATGGCATAATAGTAT
315 TATTTAGTAAATAATTATAAAAGAAGAGCTATTTTCAAAAATAAAATATAATGGCATAATAGTAT
12892677 ATTGCCT
380 ATTGCCT
* *
12892684 ACATGTCAATTTCCTATCGTATAATGAAAAAGGTATGTTCGTAATTTCATTAGGGATTATTCAAT
1 ACATGTCAATTTCCTATCATATAATGAAAAAGGTATGTTAGTAATTTCATTAGGGATTATTCAAT
* * * ** *
12892749 AATTAATTGTAAGAAAAGTGGTATTTTTGTAATTATGATAAGGGGCATAATTATCAATTTGGCCA
66 AAATAATTATAACAAAAAAGGTATTTTTGTAATTATGATAA-GGGCATAATTATAAATTTGGCCA
* * ** *
12892814 CATGTCAATTTCTTATTCTATAAAGGAAAGGGCATTTTGGTAATTTTGTTGAAGATTATTTTGTA
130 CATGTAAATTTCTTATTCTATAAAGAAAAGGGCATTTTGGTAATTTTCATGAAGATTATTTAGTA
* ** * * *
12892879 AATAATTATAGGAGAAGGGTTATTTTCATAATTATGATATGAGGGCATAATTGTAAATTTGGCAC
195 AAGAATTATAAAAGAAGGGGTATTTTCATAATTATGATATGAGGGAATAATTATAAATTTGGCAC
* * * * * *
12892944 ATGTCAACTTTTTATTGTATAAAGGAAAGGGCATTTAGGTAATTTCTTAAAGGGTTATTTTGTTA
260 ATGTCAACTTTTTATTGTATAAAGGAAAAGGCATTTAGCTAACTTCATAAAGGGTTATTTAGTAA
* * * *
12893009 ATAATTATAAAAGAAGAGGTATTTTCATAATTAAAATATAATGGTATAATAGTATATT
325 ATAATTATAAAAGAAGAGCTATTTTCAAAAATAAAATATAATGGCATAATAGTATATT
12893067 TGGACACATA
Statistics
Matches: 326, Mismatches: 47, Indels: 21
0.83 0.12 0.05
Matches are distributed among these distances:
386 2 0.01
387 106 0.33
388 205 0.63
389 9 0.03
390 4 0.01
ACGTcount: A:0.37, C:0.07, G:0.18, T:0.39
Consensus pattern (386 bp):
ACATGTCAATTTCCTATCATATAATGAAAAAGGTATGTTAGTAATTTCATTAGGGATTATTCAAT
AAATAATTATAACAAAAAAGGTATTTTTGTAATTATGATAAGGGCATAATTATAAATTTGGCCAC
ATGTAAATTTCTTATTCTATAAAGAAAAGGGCATTTTGGTAATTTTCATGAAGATTATTTAGTAA
AGAATTATAAAAGAAGGGGTATTTTCATAATTATGATATGAGGGAATAATTATAAATTTGGCACA
TGTCAACTTTTTATTGTATAAAGGAAAAGGCATTTAGCTAACTTCATAAAGGGTTATTTAGTAAA
TAATTATAAAAGAAGAGCTATTTTCAAAAATAAAATATAATGGCATAATAGTATATTGCCT
Found at i:12893032 original size:258 final size:257
Alignment explanation
Indices: 12892166--12893041 Score: 790
Period size: 258 Copynumber: 3.4 Consensus size: 257
12892156 TTCTTTTGTC
* * * * * ** * * *
12892166 CACATGTCAATTTCTTATCATATAATGAAATGGGTATTTTGGTAATATAATATGAGATTATTTTG
1 CACATGTCAATTTCTTATCGTATAAAGAAAAGGGCA-TTTGGTAATTTCTTAAGGGATTATTTAG
* ** * * * * *
12892231 -TAACAATTATAAGTGAA-AGGATATTTTCATAATTATGGTAAGTGGGAATTA-TAGCCCATTTG
65 TTAATAATTATAAAAGAAGAGG-TATTTTCATAATTATGATAAGAGGGAATAATTA-TCAATTTG
* * ** * * * *
12892293 GCCACATGTCAATTTCTTA-TCATATAATGGAAATGTTATGTTAGTAATTTCATGGATGATTATT
128 GCCACATGTCAATTTCTTATTC-TATAAAGGAAAAGGCATTTTGGTAATTTCATAGAAGATTATT
* **
12892357 TAGTAAATAATTATAACAAAAAAGGTATTTTTGTAATTATGA-ATGAAGGCATAATAT-TAAATT
192 TAGTAAATAATTATAA-AAGAAAGGTATTTTCATAATTATGATATGAAGGCATAAT-TGTAAATT
12892420 TGG
255 TGG
* * * *
12892423 TGACATGTAAATTTCTTATCATATAATA-AAAAGGGCATTTTGGTAATTTCATAAGGGATTATTT
1 -CACATGTCAATTTCTTATCGTATAA-AGAAAAGGGCA-TTTGGTAATTTCTTAAGGGATTATTT
* * * * *
12892487 AGTAAAGAATTATAAAAGAAGGGGTATTTTCATAATTATGATATGAGGGAATAATTATTAATTTG
63 AGTTAATAATTATAAAAGAAGAGGTATTTTCATAATTATGATAAGAGGGAATAATTATCAATTTG
* * * ** ** *
12892552 GCCACATGTCAATTTCTTATTGTGTAAAGGAAAAGGCATTTTGCTAGCTTCATAGGGGGTTATTT
128 GCCACATGTCAATTTCTTATTCTATAAAGGAAAAGGCATTTTGGTAATTTCATAGAAGATTATTT
* * * * * *
12892617 AGTAAATAATTATAAAAGAATAGCTATTTTCAAAAATATGATATGATGGCATAATAGTATA-TTG
193 AGTAAATAATTATAAAAGAA-AGGTATTTTCATAATTATGATATGAAGGCATAATTGTAAATTTG
*
12892681 C
257 G
* * * * * *
12892682 CTACATGTCAATTTCCTATCGTATAATGAAAAAGGTATGTTCGTAATTTCATT-AGGGATTATTC
1 C-ACATGTCAATTTCTTATCGTATAAAGAAAAGGGCAT-TTGGTAATTTC-TTAAGGGATTATTT
* * * ** *
12892746 A-ATAATTAATTGTAAGAA-AAGTGGTATTTTTGTAATTATGATAAG-GGGCATAATTATCAATT
63 AGTTAA-TAATTATAA-AAGAAGAGGTATTTTCATAATTATGATAAGAGGGAATAATTATCAATT
* ** *
12892808 TGGCCACATGTCAATTTCTTATTCTATAAAGGAAAGGGCATTTTGGTAATTTTGTTGAAGATTAT
126 TGGCCACATGTCAATTTCTTATTCTATAAAGGAAAAGGCATTTTGGTAATTTCATAGAAGATTAT
* ** * *
12892873 TTTGTAAATAATTATAGGAGAAGGGTTATTTTCATAATTATGATATGAGGGCATAATTGTAAATT
191 TTAGTAAATAATTATAAAAGAAAGG-TATTTTCATAATTATGATATGAAGGCATAATTGTAAATT
12892938 TGG
255 TGG
* *
12892941 CACATGTCAACTTT-TTATTGTATAAAGGAAAGGGCATTTAGGTAATTTCTTAAAGGG-TTATTT
1 CACATGTCAA-TTTCTTATCGTATAAAGAAAAGGGCATTT-GGTAATTTCTT-AAGGGATTATTT
*
12893004 TGTTAATAATTATAAAAGAAGAGGTATTTTCATAATTA
63 AGTTAATAATTATAAAAGAAGAGGTATTTTCATAATTA
12893042 AAATATAATG
Statistics
Matches: 492, Mismatches: 104, Indels: 44
0.77 0.16 0.07
Matches are distributed among these distances:
257 7 0.01
258 244 0.50
259 218 0.44
260 23 0.05
ACGTcount: A:0.36, C:0.07, G:0.18, T:0.39
Consensus pattern (257 bp):
CACATGTCAATTTCTTATCGTATAAAGAAAAGGGCATTTGGTAATTTCTTAAGGGATTATTTAGT
TAATAATTATAAAAGAAGAGGTATTTTCATAATTATGATAAGAGGGAATAATTATCAATTTGGCC
ACATGTCAATTTCTTATTCTATAAAGGAAAAGGCATTTTGGTAATTTCATAGAAGATTATTTAGT
AAATAATTATAAAAGAAAGGTATTTTCATAATTATGATATGAAGGCATAATTGTAAATTTGG
Found at i:12894200 original size:129 final size:129
Alignment explanation
Indices: 12893701--12894237 Score: 442
Period size: 131 Copynumber: 4.1 Consensus size: 129
12893691 ATAGACTATA
* * * * ** * *
12893701 TAGTAAATAATTATAAGAGAAAGGATATTTTTGTAATTATTG-TGTGGGGGCATAATAGTCAATT
1 TAGTAAATAATTATAAGAAAAAGGGTATTTTCGTAATTA-TGATATAAGAGCATAATAGTC-ACT
* * ** * * ** **
12893765 TTACCACATGTCAATTACAAATCATATATTGGAAAAGGGTGTTTTGGTAATTTAATAAGAAATTA
64 TGACCACATGTCAATTTCTTATCATATAATGG-AAAGGGTATTTTGGTAATTTTGTAAGGGATTA
12893830 TT
128 TT
* * * *
12893832 TAGTAAATAATTATAAGACAAAAGGGTATTTTCATAATCATGATAAAAGAGCATAATAGTCAGTT
1 TAGTAAATAATTATAAGA-AAAAGGGTATTTTCGTAATTATGATATAAGAGCATAATAGTCA-CT
* ** * ** * *
12893897 TGGCCACATGTCAATTTCTTATTGTATAAAGGAAAGGACATTTTGGT-ATTTTTTTAGGAGATTA
64 TGACCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTGTAAGG-GATTA
12893961 TT
128 TT
* * * * *
12893963 TAGTAAATAATTATAAG-ACAAGGGATATTTTCGTAATTATTATATAAGGGCAAAATA-CCACAT
1 TAGTAAATAATTATAAGAAAAAGGG-TATTTTCGTAATTATGATATAAGAGCATAATAGTCAC--
** * * * * * * * *
12894026 TTGGA-CGTATGTTACTTTCCTATCAAATAATGGGATGGGCAATTTT-ATAATTTTGTAAGGG-T
63 TT-GACCACATGTCAATTTCTTATCATATAATGGAAAGGG-TATTTTGGTAATTTTGTAAGGGAT
12894088 TATT
126 TATT
* * *
12894092 TAATAAATAATTATAA-AAAAAGGAGTATTTTCGTAATTATGGTATGAGAGCATAATAGTCTACT
1 TAGTAAATAATTATAAGAAAAAGG-GTATTTTCGTAATTATGATATAAGAGCATAATAGTC-ACT
* *
12894156 TGACCACATGACAATTTCTTATCATATAATGGAAAAGGGTATTTTTGTAATTTTGTAAGGGATTA
64 TGACCACATGTCAATTTCTTATCATATAATGG-AAAGGGTATTTTGGTAATTTTGTAAGGGATTA
12894221 TT
128 TT
12894223 TAGTAAATAATTATA
1 TAGTAAATAATTATA
12894238 TGACATAATT
Statistics
Matches: 315, Mismatches: 73, Indels: 36
0.74 0.17 0.08
Matches are distributed among these distances:
128 2 0.01
129 88 0.28
130 79 0.25
131 92 0.29
132 54 0.17
ACGTcount: A:0.38, C:0.08, G:0.17, T:0.37
Consensus pattern (129 bp):
TAGTAAATAATTATAAGAAAAAGGGTATTTTCGTAATTATGATATAAGAGCATAATAGTCACTTG
ACCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTGGTAATTTTGTAAGGGATTATT
Found at i:12894568 original size:121 final size:121
Alignment explanation
Indices: 12894267--12895221 Score: 427
Period size: 129 Copynumber: 7.5 Consensus size: 121
12894257 ACGACATTTT
* * *
12894267 AATTTCCTATCATATAATGGAAATGGCATTTTGGTAATTTCTT-AGAAGATTATTTGGTAAATAA
1 AATTTCTTATCATATAAT-GAAATGGCATTTTGATAATTTCTTGA-AAGATTATTTAGTAAATAA
* * * * * ***
12894331 TTATAAGAGAAAAGGTATTCTTGTAACTATGGC-ATGACAACATAATAGTC-ACTCGATTACATG
64 TTAT-A-AGAAAGGGTGTT-TTGTAATTAT--CTATG---A-ATAATAGTCTATTTGGCCACATG
*
12894394 CC
120 TC
* * * *
12894396 AATTTCCTATCATATAATGGAAAAGGCATTTTGATAATTTAATTG-AGGATTATTTAGTAAATAA
1 AATTTCTTATCATATAAT-GAAATGGCATTTTGATAATTT-CTTGAAAGATTATTTAGTAAATAA
* *
12894460 TTATAAGATAAGGGTGTTTTCGTAATTAT-T-T-TATGATAGTCTATTTGGCCACATGTC
64 TTATAAGA-AAGGGTGTTTT-GTAATTATCTATGAATAATAGTCTATTTGGCCACATGTC
*
12894517 AATTTCTTATCATATAATAGAAATGACATTTT-AGTAATTTCTTGAAAGATTATTTAGTAAATAA
1 AATTTCTTATCATATAAT-GAAATGGCATTTTGA-TAATTTCTTGAAAGATTATTTAGTAAATAA
* * * * * *
12894581 TTATAAGAAAAGATGTATTTTTCATTTATCGTATGAAGGCTTAATAGTCTATTTGGCCACTTTTC
64 TTATAAGAAAGGGTGT-TTTGT-AATTATC-TATGAA----TAATAGTCTATTTGGCCACATGTC
* * * *
12894646 AATTTCTTATTATATAATCAAATGGGTATTTTGATAATTTCAT-AAAGGATTATTTAGTAAATAA
1 AATTTCTTATCATATAATGAAAT-GGCATTTTGATAATTTCTTGAAA-GATTATTTAGTAAATAA
* * * *
12894710 TTATAAAAGAAGTGTATTTTTGTAATTATCGTATGAGGGCATAATAGTCGATTTGGCCACATGTC
64 TTATAAGA-AAGGGT-GTTTTGTAATTATC-TATGA----ATAATAGTCTATTTGGCCACATGTC
** * **
12894775 AATTTCTTATCATGGAATGAAA-GGTTATTTT-AGTAATTTCTTGAGGGATTATTTAGTAAATAA
1 AATTTCTTATCATATAATGAAATGG-CATTTTGA-TAATTTCTTGAAAGATTATTTAGTAAATAA
* ** * * * * * *
12894838 TTATAATAGAATA-GGTATTCTCATAATTATTGTATGAGGGCATGATATTCCATTT-GACATATG
64 TTAT-A-AGAA-AGGGTGTT-TTGTAATTA-TCTATGA----ATAATAGTCTATTTGGCCACATG
12894901 TC
120 TC
* * * * * **
12894903 AATTTCTTATCATATAGTGGAAATGGTATTTTCATAAATTCATAGAAA-ATTATTTAGTAAATCT
1 AATTTCTTATCATATAAT-GAAATGGCATTTTGATAATTTC-TTGAAAGATTATTTAGTAAATAA
* ** * * * *
12894967 TTATAAGAGAAGGG-GAATTTTTGTAATTATGATGTGATGGTGTAATTGTCAATTTGACCACATA
64 TTATAAGA-AAGGGTG---TTTTGTAA-T-T-ATCT-AT-GAATAATAGTCTATTTGGCCACATG
12895031 TC
120 TC
* * * ** *
12895033 AATTTCTTGA-AATATAATGGAAA-GGCATTTTGGTAATTTCCT-AGGGGATTATTTAGCAAATA
1 AATTTCTT-ATCATATAAT-GAAATGGCATTTTGATAATTTCTTGA-AAGATTATTTAGTAAATA
* * * * * * * *
12895095 ATTATAA-AAAGGGGAGTATTTTAATAATTATTGCAGAGGCCAAAAATAGTATATTAGGCTACAT
63 ATTATAAGAAA--GG-GTGTTTT-GTAATTA-T-C-TATG--AATAATAGTCTATTTGGCCACAT
12895159 GTC
119 GTC
* * * * * * *
12895162 AATTTCTTATCATTTAATACAAAAGGTATTTTGGTAATTTCATGATAGATTATTTAGTAA
1 AATTTCTTATCATATAAT-GAAATGGCATTTTGATAATTTCTTGAAAGATTATTTAGTAA
12895222 TTATGGTATG
Statistics
Matches: 638, Mismatches: 122, Indels: 131
0.72 0.14 0.15
Matches are distributed among these distances:
120 19 0.03
121 77 0.12
123 1 0.00
124 1 0.00
125 2 0.00
126 1 0.00
127 18 0.03
128 94 0.15
129 335 0.53
130 78 0.12
131 7 0.01
132 3 0.00
133 2 0.00
ACGTcount: A:0.36, C:0.09, G:0.16, T:0.40
Consensus pattern (121 bp):
AATTTCTTATCATATAATGAAATGGCATTTTGATAATTTCTTGAAAGATTATTTAGTAAATAATT
ATAAGAAAGGGTGTTTTGTAATTATCTATGAATAATAGTCTATTTGGCCACATGTC
Found at i:12894677 original size:129 final size:129
Alignment explanation
Indices: 12894495--12895221 Score: 511
Period size: 129 Copynumber: 5.6 Consensus size: 129
12894485 TTATTTTATG
*
12894495 ATAGTCTATTTGGCCACATGTCAATTTCTTATCATATAATAGAAAT-GACATTTTAGTAATTTCT
1 ATAGTCTATTTGGCCACATGTCAATTTCTTATCATATAAT-GAAATGGATATTTTAGTAATTTCT
* *
12894559 TGAAAGATTATTTAGTAAATAATTATAAGAA-AAGATGTATTTTT-CATTTATCGTATGAAGGCT
65 TGAAAGATTATTTAGTAAATAATTATAA-AAGAAG-TGTATTTTTGCAATTATCGTATGAAGGCA
12894622 TA
128 TA
* * * * * *
12894624 ATAGTCTATTTGGCCACTTTTCAATTTCTTATTATATAATCAAATGGGTATTTT-GATAATTTCA
1 ATAGTCTATTTGGCCACATGTCAATTTCTTATCATATAATGAAATGGATATTTTAG-TAATTTCT
* *
12894688 T-AAAGGATTATTTAGTAAATAATTATAAAAGAAGTGTATTTTTGTAATTATCGTATGAGGGCAT
65 TGAAA-GATTATTTAGTAAATAATTATAAAAGAAGTGTATTTTTGCAATTATCGTATGAAGGCAT
12894752 A
129 A
* ** *
12894753 ATAGTCGATTTGGCCACATGTCAATTTCTTATCATGGAATGAAA-GGTTATTTTAGTAATTTCTT
1 ATAGTCTATTTGGCCACATGTCAATTTCTTATCATATAATGAAATGGATATTTTAGTAATTTCTT
** * * *** * *
12894817 GAGGGATTATTTAGTAAATAATTATAATAGAA-TAGGTATTCTCATAATTATTGTATGAGGGCAT
66 GAAAGATTATTTAGTAAATAATTATAAAAGAAGT--GTATTTTTGCAATTATCGTATGAAGGCAT
*
12894881 G
129 A
* * * * * *
12894882 ATATTCCATTT-GACATATGTCAATTTCTTATCATATAGTGGAAATGG-TATTTTCA-TAAATTC
1 ATAGTCTATTTGGCCACATGTCAATTTCTTATCATATAAT-GAAATGGATATTTT-AGTAATTTC
* ** * * * * * *
12894944 ATAGAAA-ATTATTTAGTAAATCTTTATAAGAGAAGGGGAATTTTTGTAATTAT-GATGTGATGG
64 -TTGAAAGATTATTTAGTAAATAATTATAAAAGAA-GTGTATTTTTGCAATTATCG-TATGAAGG
**
12895007 TGTA
126 CATA
* * * * * * *
12895011 ATTGTCAATTTGACCACATATCAATTTCTTGA-AATATAATGGAAA-GG-CATTTTGGTAATTTC
1 ATAGTCTATTTGGCCACATGTCAATTTCTT-ATCATATAAT-GAAATGGATATTTTAGTAATTTC
* ** * ** * *** * *
12895073 CT-AGGGGATTATTTAGCAAATAATTATAAAAAGGGGAGTATTTTAATAATTATTGCA-G-AGGC
64 TTGA-AAGATTATTTAGTAAATAATTAT-AAAAGAAGTGTATTTTTGCAATTATCGTATGAAGG-
*
12895135 CAAAA
126 C-ATA
* * * * * * * *
12895140 ATAGTATATTAGGCTACATGTCAATTTCTTATCATTTAATACAAAAGG-TATTTTGGTAATTTCA
1 ATAGTCTATTTGGCCACATGTCAATTTCTTATCATATAAT-GAAATGGATATTTTAGTAATTTCT
*
12895204 TGATAGATTATTTAGTAA
65 TGAAAGATTATTTAGTAA
12895222 TTATGGTATG
Statistics
Matches: 470, Mismatches: 100, Indels: 55
0.75 0.16 0.09
Matches are distributed among these distances:
127 4 0.01
128 88 0.19
129 311 0.66
130 65 0.14
131 2 0.00
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (129 bp):
ATAGTCTATTTGGCCACATGTCAATTTCTTATCATATAATGAAATGGATATTTTAGTAATTTCTT
GAAAGATTATTTAGTAAATAATTATAAAAGAAGTGTATTTTTGCAATTATCGTATGAAGGCATA
Found at i:12894912 original size:257 final size:258
Alignment explanation
Indices: 12894495--12895101 Score: 658
Period size: 258 Copynumber: 2.4 Consensus size: 258
12894485 TTATTTTATG
* *
12894495 ATAGTCTATTTGGCCACATGTCAATTTCTTATCATATAATAGAAATGACATTTTAGTAATTTCTT
1 ATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATAGAAA-GGCATTTTAGTAATTTCTT
** * * *
12894560 GAAAGATTATTTAGTAAATAATTATAAGAAAAGATGTATTTTTCATTTATCGTATGAAGGCTTAA
65 GAGGGATTATTTAGTAAATAATTATAAGAAAAGAGGTATTTCTCATTTATCGTATGAAGGCATAA
* * * * * *
12894625 TAGTCTATTTGGCCACTTTTCAATTTCTTATTATATAAT-CAAATGGGTATTTTGATAATTTCAT
130 TAGTCCATTTGGACACTTGTCAATTTCTTATCATATAATGCAAAT-GGTATTTTCATAAATTCAT
* * *
12894689 A-AAGGATTATTTAGTAAATAATTATAAAAGAA-GTGTATTTTTGTAATTATCG-TATGAGGGCA
194 AGAA-AATTATTTAGTAAATAATTATAAAAGAAGGGGAATTTTTGTAATTAT-GATATGAGGGCA
12894751 TA
257 TA
* ** *
12894753 ATAGTCGATTTGGCCACATGTCAATTTCTTATCATGGAAT-GAAAGGTTATTTTAGTAATTTCTT
1 ATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATAGAAAGG-CATTTTAGTAATTTCTT
* * * * *
12894817 GAGGGATTATTTAGTAAATAATTATAATAGAATAGGTA-TTCTCATAATTATTGTATGAGGGCAT
65 GAGGGATTATTTAGTAAATAATTATAAGAAAAGAGGTATTTCTCAT--TTATCGTATGAAGGCAT
* * * *
12894881 GATATTCCATTT-GACA-TATGTCAATTTCTTATCATATAGTGGAAATGGTATTTTCATAAATTC
128 AATAGTCCATTTGGACACT-TGTCAATTTCTTATCATATAATGCAAATGGTATTTTCATAAATTC
** * * * **
12894944 ATAGAAAATTATTTAGTAAATCTTTATAAGAGAAGGGGAATTTTTGTAATTATGATGTGATGGTG
192 ATAGAAAATTATTTAGTAAATAATTATAAAAGAAGGGGAATTTTTGTAATTATGATATGAGGGCA
12895009 TA
257 TA
* * * * * * *
12895011 ATTGTCAATTTGACCACATATCAATTTCTTGA-AATATAATGGAAAGGCATTTTGGTAATTTCCT
1 ATAGTCAATTTGGCCACATGTCAATTTCTT-ATCATATAATAGAAAGGCATTTTAGTAATTTCTT
*
12895075 -AGGGGATTATTTAGCAAATAATTATAA
65 GA-GGGATTATTTAGTAAATAATTATAA
12895102 AAAGGGGAGT
Statistics
Matches: 292, Mismatches: 46, Indels: 22
0.81 0.13 0.06
Matches are distributed among these distances:
256 8 0.03
257 118 0.40
258 159 0.54
259 7 0.02
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.41
Consensus pattern (258 bp):
ATAGTCAATTTGGCCACATGTCAATTTCTTATCATATAATAGAAAGGCATTTTAGTAATTTCTTG
AGGGATTATTTAGTAAATAATTATAAGAAAAGAGGTATTTCTCATTTATCGTATGAAGGCATAAT
AGTCCATTTGGACACTTGTCAATTTCTTATCATATAATGCAAATGGTATTTTCATAAATTCATAG
AAAATTATTTAGTAAATAATTATAAAAGAAGGGGAATTTTTGTAATTATGATATGAGGGCATA
Found at i:12895313 original size:100 final size:100
Alignment explanation
Indices: 12895139--12895321 Score: 233
Period size: 100 Copynumber: 1.8 Consensus size: 100
12895129 AGAGGCCAAA
* * *
12895139 AATAGTATATTAGGCTACATGTCAATTTCTTATCATTTAATACAAAAGGTATTTTGGTAATTTCA
1 AATAGTATATTAGGCTACATGTCAATTTCTTATCATATAATACAAAAGGTATCTTGGTAATTACA
*
12895204 TGATAGATTATTTAGTAATTATGGTATGCGTGAAT
66 TCATAGATTATTTAGTAATTATGGTATGCGTGAAT
* * * ** ** *
12895239 AATAGTTTATTAGGCTATATGTCACTTTCTTATCATATAATGGAAGGGGTATCTTGGTACTTACA
1 AATAGTATATTAGGCTACATGTCAATTTCTTATCATATAATACAAAAGGTATCTTGGTAATTACA
*
12895304 -CATGGGATTATTTAGTAA
66 TCAT-AGATTATTTAGTAA
12895322 ATAATTATAA
Statistics
Matches: 69, Mismatches: 13, Indels: 2
0.82 0.15 0.02
Matches are distributed among these distances:
99 2 0.03
100 67 0.97
ACGTcount: A:0.32, C:0.09, G:0.17, T:0.41
Consensus pattern (100 bp):
AATAGTATATTAGGCTACATGTCAATTTCTTATCATATAATACAAAAGGTATCTTGGTAATTACA
TCATAGATTATTTAGTAATTATGGTATGCGTGAAT
Found at i:12895449 original size:129 final size:129
Alignment explanation
Indices: 12895219--12897463 Score: 967
Period size: 129 Copynumber: 17.4 Consensus size: 129
12895209 GATTATTTAG
* * * * * *
12895219 TAATTATGGTATGCGTGAATAATAGT-TTATTAGGCTATATGTCACTTTCTTATCATATAATGGA
1 TAATTATGGTATGAGGGCATAATAGTCTAATT-GGCTACATGTCAATTTCTTATCATATAATGGA
* * * * * * * **
12895283 AGGGGTATCTTGGTACTTACACATGGGATTATTTAGTAAATAATTATAAGACAAAGGTGCTTTCA
65 AAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAAAGGTATTTTCA
* * *
12895348 TAATTATTGTATGAGGGAATAATAGTCTAATTGGCTACATGTTAATTTCTTATCATATAATGGAA
1 TAATTATGGTATGAGGGCATAATAGTCTAATTGGCTACATGTCAATTTCTTATCATATAATGGAA
* * ***
12895413 AGGGTATTTTTGTAATTTCATAGGGGATTATTTAGTAAATAATTATAAGA-ATATAAAAATTTTC
66 AGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGA-A-AGGTATTTTC
12895477 A
129 A
** * * * * * ** *
12895478 TAATTATGAAATGATGACATTATTGTC-AATTTGGCCACATGTTTATTTCTTATTGTATATAA--
1 TAATTATGGTATGAGGGCATAATAGTCTAA-TTGGCTACATGTCAATTTCTTA-T-CATATAATG
* * * * * * ** * * * *
12895540 G-AAGTGATATTTTTGTAATTATGATATA--GCTCA--TAAT-AATACGCT-T-GGACACATGTC
63 GAAAG-GGTATTTTGGTAATT-TCATA-AGGGATTATTTAGTAAATA-ATTATAAGAGAAAGGT-
12895597 ACTTTCTCA
123 A-TTT-TCA
* * * * * * * * * *
12895606 TCAAATAATGGGAT-A-GCCAGT--T-TTGTAATT-TCATAACGAATTTTTTAAATGT-ATATCA
1 T--AATTATGGTATGAGGGCA-TAATAGTCTAATTGGC-T-AC--A---TGTCAATTTCTTATCA
* * ** * * * *
12895664 TATAATAGAAATGGTATTTTCATAATTTCATCAA-AGATTATTTAGTAAACAATTTTAAGAGTAG
56 TATAATGGAAAGGGTATTTTGGTAATTTCAT-AAGGGATTATTTAGTAAATAATTATAAGAG-AA
*
12895728 AGGCATTTTCA
119 AGGTATTTTCA
* * * * * * * * * *
12895739 TAACTATAGTATGAGGGCATAATAGTCTATTTGGCCACAAGTAAACTTCTTATCATGTAACGAAA
1 TAATTATGGTATGAGGGCATAATAGTCTAATTGGCTACATGTCAATTTCTTATCATATAATG-GA
** * * * * * * *
12895804 AAATGTCTTTTGGTAATATAATATGGGATTATTTTGT-AATAATTGTAAGAGAATTGGTACTTTT
65 AAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAA-AGGTA-TTTT
*
12895868 -G
128 CA
** * * * * * * *
12895869 TAATTATGGTATGAACGAATTATAGTCCATTTGGCCT-CATTTCAATTTCATATCATAAAATGGA
1 TAATTATGGTATGAGGGCATAATAGTCTAATTGG-CTACATGTCAATTTCTTATCATATAATGGA
* * * * * * *
12895933 AAGTGTATTTTGGTGATTTCATAGGGGATT-TTTAGTAAA-ACTTATAAAAGGAAGGGTATTTTT
65 AAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGA-GAAAGGTATTTTC
*
12895996 G
129 A
** * * *
12895997 TAATTATACTTTTATGAGGGCATAATAGTCAAATTGGCCACATGTAAATTTCTTATCATATAATG
1 TAA-T-TA-TGGTATGAGGGCATAATAGTCTAATTGGCTACATGTCAATTTCTTATCATATAATG
* * ** ** * *
12896062 GAAATGGGCATTTGGGTAATTTTGTTGGGGATT-TTTAGTAAATAATTATAAAAGAAGGGATATT
63 GAAA-GGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAAAGG-TATT
*
12896126 ATCA
126 TTCA
* ** * * * * *
12896130 TAATTATGATATGATAGCATAATTA-TC-AATTTAGCCATATGTCAATTTCTTAT-GTATAAAGG
1 TAATTATGGTATGAGGGCATAA-TAGTCTAA-TTGGCTACATGTCAATTTCTTATCATATAATGG
*
12896192 AAAGGGCATTTTGGTAATTTCATAAAGGG-TTATTTAGTAAATAATTATAAGAGAAAGGGTATTT
64 AAAGGGTATTTTGGTAATTTCAT-AAGGGATTATTTAGTAAATAATTATAAGAGAAA-GGTATTT
*
12896256 TCG
127 TCA
* * * * * * *
12896259 TAATTATGATATGAGGGCATAATAGTAC-ATTTGGAC-ATATGTTACTTTCTCATCAAATAATGG
1 TAATTATGGTATGAGGGCATAATAGT-CTAATTGG-CTACATGTCAATTTCTTATCATATAATGG
* * * * * * * *
12896322 GATGGGTAGTTTT-GTAATTTCGTAAGGG-TTATTAAGTAAATCACTATAAAAGAATGGGTATTT
64 AAAGGGTA-TTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAA-AGGTATTT
12896385 TCA
127 TCA
* * * *
12896388 TAATTATGGTATGAGGGCATAATAGTCCT--TTCGATCACATGTTAATTTCTTATCATCTAATGG
1 TAATTATGGTATGAGGGCATAATAGT-CTAATTGGCT-ACATGTCAATTTCTTATCATATAATGG
*** * * * **
12896451 AATA-GGTATTTCCATAATGTCATAAGGGATTATTTAATAAAGAATTATAAGAGTAGTGGTATTT
64 AA-AGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAG-AAAGGTATTT
**
12896515 TTG
127 TCA
* ** * * * *
12896518 TAATTATGATAAAATGGCGTAATTGT-TAATTTAAGC-ACATGTCAATTTCTTATCATATAATGG
1 TAATTATGGTATGAGGGCATAATAGTCTAA-TT-GGCTACATGTCAATTTCTTATCATATAATGG
* ** ** ** * *
12896581 AAAAGACATCTTCAG-AATTTTTTAAGAGATTATTTGGTAAATAATTATAAGA-AAATGAGTATT
64 AAAGGGTAT-TTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAAA-G-GTATT
**
12896644 TTTG
126 TTCA
* * * * *
12896648 TAATTATGGCATTAGGGCATAATAGTCT-GTTAGGCTACATGTCAATTTCTTATCATGTAATAGA
1 TAATTATGGTATGAGGGCATAATAGTCTAATT-GGCTACATGTCAATTTCTTATCATATAATGGA
** * * * ** *
12896712 AAATGCATTTTGTTAATTTCATAGGGGATTATTTAGTAAATAATTATAA-ATGGTAGATATTTTC
65 AAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGA-GAAAGGTATTTTC
12896776 A
129 A
* * * * * * *
12896777 TAATTATGGTATGAGAGAATAATAGT-TCATTTGTTCACATATCAATTTCTTATCATATAATGAA
1 TAATTATGGTATGAGGGCATAATAGTCTAATTGGCT-ACATGTCAATTTCTTATCATATAATGGA
* * * * * *
12896841 AAGGGTATTTTGGTAATATAATATGAGATT-TTT--T-AGTAATTATAAGCA-AAGAGATATTTT
65 AAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAG-AGAA-AGGTATTTT
12896901 CA
128 CA
* * * * * ** * * * * * *
12896903 TAATTACGGTATAAAGGAATTATAACCCATTTGGCCACATATCAATTTCTTATCATGTAATGAAA
1 TAATTATGGTATGAGGGCATAATAGTCTAATTGGCTACATGTCAATTTCTTATCATATAATGGAA
** * * *
12896968 ATAGTATTTTGGTAATTTCATATA-TGATTATTTTGTAAATAATTATAATAGAAGAGGTACTTTT
66 AGGGTATTTTGGTAATTTCATA-AGGGATTATTTAGTAAATAATTATAAGAGAA-AGGTA-TTTT
*
12897032 -G
128 CA
* * * *
12897033 TAATTAT-GAATGAGGGCATAATA-TTTAATTTGG-TCACATGTAAATTTCTTATCATA-AATAG
1 TAATTATGGTATGAGGGCATAATAGTCTAA-TTGGCT-ACATGTCAATTTCTTATCATATAATGG
* * * * * * * *
12897094 AAAGGGCAATTTGATAATTTCATTAGGTATTATTTAGTAAATAGTTATAAAAGAAGGGGTATTTT
64 AAAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAA-AGGTATTTT
*
12897159 -G
128 CA
* **** * * * * ** *
12897160 TAATTATGATATGAAAAAATAGTTGT-TAATTTGGC-CCATGTCAATATCTTATTGTATAAAGGA
1 TAATTATGGTATGAGGGCATAATAGTCTAA-TTGGCTACATGTCAATTTCTTATCATATAATGGA
* * * * * * *
12897223 AAAGGCATTTTGGTAACTTCTTAGGGGGTTATTTA-TAAATAATTATAAAAGAAAAGGTATTTTC
65 AAGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAG-AAAGGTATTTTC
12897287 A
129 A
* * * * * * ** * *
12897288 AAAATATGATATGATGGCAAAATAGTCTATTTGATTACATTTCAATTTCTTATC-------GTAA
1 TAATTATGGTATGAGGGCATAATAGTCTAATTGGCTACATGTCAATTTCTTATCATATAATGGAA
* * *
12897346 AGGGTATTTTGGTAATTTCGT-TGGAGATTATTTAGTAAATAATTA-AAGGAGAATGAGTATTTT
66 AGGGTATTTTGGTAATTTCATAAGG-GATTATTTAGTAAATAATTATAA-GAGAAAG-GTATTTT
**
12897409 TG
128 CA
* * * *
12897411 TAATTATGATATGAGAGCATAATTGTC-AATTTGGCAACATGTCAATTTCTTAT
1 TAATTATGGTATGAGGGCATAATAGTCTAA-TTGGCTACATGTCAATTTCTTAT
12897464 TGGTAATTTC
Statistics
Matches: 1587, Mismatches: 411, Indels: 242
0.71 0.18 0.11
Matches are distributed among these distances:
121 2 0.00
122 34 0.02
123 59 0.04
125 12 0.01
126 87 0.05
127 77 0.05
128 186 0.12
129 468 0.29
130 431 0.27
131 127 0.08
132 54 0.03
133 28 0.02
134 10 0.01
135 8 0.01
136 4 0.00
ACGTcount: A:0.36, C:0.08, G:0.17, T:0.39
Consensus pattern (129 bp):
TAATTATGGTATGAGGGCATAATAGTCTAATTGGCTACATGTCAATTTCTTATCATATAATGGAA
AGGGTATTTTGGTAATTTCATAAGGGATTATTTAGTAAATAATTATAAGAGAAAGGTATTTTCA
Found at i:12897545 original size:109 final size:109
Alignment explanation
Indices: 12897354--12897574 Score: 424
Period size: 109 Copynumber: 2.0 Consensus size: 109
12897344 AAAGGGTATT
*
12897354 TTGGTAATTTCGTTGGAGATTATTTAGTAAATAATTAAAGGAGAATGAGTATTTTTGTAATTATG
1 TTGGTAATTTCGTTGGAGATTATTTAGTAAATAATTAAAGGAGAATGAGTATTTTCGTAATTATG
12897419 ATATGAGAGCATAATTGTCAATTTGGCAACATGTCAATTTCTTA
66 ATATGAGAGCATAATTGTCAATTTGGCAACATGTCAATTTCTTA
*
12897463 TTGGTAATTTCGTTGGGGATTATTTAGTAAATAATTAAAGGAGAATGAGTATTTTCGTAATTATG
1 TTGGTAATTTCGTTGGAGATTATTTAGTAAATAATTAAAGGAGAATGAGTATTTTCGTAATTATG
12897528 ATATGAGAGCATAATTGTCAATTTGGCAACATGTCAATTTCTTA
66 ATATGAGAGCATAATTGTCAATTTGGCAACATGTCAATTTCTTA
12897572 TTG
1 TTG
12897575 TATAAAAGAA
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 110 1.00
ACGTcount: A:0.33, C:0.07, G:0.20, T:0.40
Consensus pattern (109 bp):
TTGGTAATTTCGTTGGAGATTATTTAGTAAATAATTAAAGGAGAATGAGTATTTTCGTAATTATG
ATATGAGAGCATAATTGTCAATTTGGCAACATGTCAATTTCTTA
Found at i:12897699 original size:130 final size:127
Alignment explanation
Indices: 12897479--12898970 Score: 782
Period size: 130 Copynumber: 11.5 Consensus size: 127
12897469 ATTTCGTTGG
* *
12897479 GGATTATTTAGTAAATAATTA-AAGGAGAATGAGTATTTTCGTAATTATGATATGAGAGCATAAT
1 GGATTATTTAGTAAATAATTATAA-GAAAATG-GTATTTTCGTAATTATGATATGAGGGCATAAT
* ** * * *
12897543 TGTCA-ATTT-GGCAACATGTCAATTTCTTATTGTATAAAAGAAATGACATTTTAGTAATTTCTT
64 AGT-ATATTTGGGC-ACATGTCAATTTCTTATCATATAAAGGAAAGGGCATTTT-GTAATTTCTT
12897606 AAA
126 -AA
* * *
12897609 GTGA-TATATAGTAAATAATTATAAGAAAATGGTTATTTTCGTAATTAAGATATAAGGGCATAAT
1 G-GATTATTTAGTAAATAATTATAAGAAAATGG-TATTTTCGTAATTATGATATGAGGGCATAAT
* * * * * * *
12897673 AGTATATTTGGGCACATGTTAGTTTCTGATCAAATAATGG-GATGGCTAGTTTTGTAATTT-TGT
64 AGTATATTTGGGCACATGTCAATTTCTTATCATATAAAGGAAAGGGC-A-TTTTGTAATTTCT-T
12897736 AA
126 AA
* * * *
12897738 GGGTTATTTAGTAAATAATTATAATAAAATGGGTATTTTCGTAATTATGGTATGAGAGCATAATA
1 GGATTATTTAGTAAATAATTATAAGAAAAT-GGTATTTTCGTAATTATGATATGAGGGCATAATA
* ** * * * * * *
12897803 GTAAATTCAGTCACATATCAATTTCTTATCAT-TAATGGAAAGAGTATTTTTGTAATTTCATAA
65 GTATATTTGGGCACATGTCAATTTCTTATCATATAAAGGAAAGGGCA-TTTTGTAATTTCTTAA
* * ** * *
12897866 GGGATTATTTAGTAATTATTTATAAGAAAATAGGTATTTTCGTAATTATGATAAAATGG-AGTGA
1 -GGATTATTTAGTAAATAATTATAAGAAAAT-GGTATTTTCGTAATTATGATATGAGGGCA-TAA
* ** *
12897930 TAGTCA-ATTTGGCCATGTGTCAATTTCCTT-TCATATAATGGAAAGGGCATTTTGATAATTTCT
63 TAGT-ATATTTGGGCACATGTCAATTT-CTTATCATATAAAGGAAAGGGCATTTTG-TAATTTCT
*
12897993 TAT
125 TAA
* * *
12897996 GGCATTATTTTGTAAATAATTATAGGAGAAAA-GATATTTTCATAATTAT-AGTATGAGGGCATA
1 GG-ATTATTTAGTAAATAATTATA--AGAAAATGGTATTTTCGTAATTATGA-TATGAGGGCATA
* * * * * *
12898059 ATAGTTTATTCGGCCACATGTAAATTTCTTATCATATAATGGAAAGGGCATTTTGGTAAATTCAT
62 ATAGTATATTTGGGCACATGTCAATTTCTTATCATATAAAGGAAAGGGCATTTT-GTAATTTC-T
**
12898124 TGG
125 TAA
* * * * * ** *
12898127 GGTTTATTTAGTAAATAGTTATAGGAAAACGAATATTTTTATAATTATGATATGA-GGCATAATT
1 GGATTATTTAGTAAATAATTATAAGAAAATG-GTATTTTCGTAATTATGATATGAGGGCATAATA
* * * ** * *
12898191 GT-TAATTTGGCCACATCTCAATTTCATATTGTCTAAAGGAAAAGGCATTTTGGTAATTTCTTAA
65 GTAT-ATTTGGGCACATGTCAATTTCTTATCATATAAAGGAAAGGGCATTTT-GTAATTTCTT-A
12898255 A
127 A
** * **
12898256 GGATTATTTAGTAAATAATTATAAGAGAAA-GAGTATTTTTATAATTATGATATAAAAGCATAAT
1 GGATTATTTAGTAAATAATTATAAGA-AAATG-GTATTTTCGTAATTATGATATGAGGGCATAAT
* * * * * * * * * * * *
12898320 GGTACATGTGGACACATGTTACTTT-TTCATTAAATAATGGGATGGGTAGTTTTGTAATTT-TGT
64 AGTATATTTGGGCACATGTCAATTTCTT-ATCATATAAAGGAAAGGGCA-TTTTGTAATTTCT-T
12898383 AA
126 AA
* * * * *
12898385 GGGA-TATTTAGTAAACAATTATAAGAGAACA-GGTATTTTTGTAATTATGGTATGAGAGCTTAA
1 -GGATTATTTAGTAAATAATTATAAGA-AA-ATGGTATTTTCGTAATTATGATATGAGGGCATAA
* * * * * * * **
12898448 TAAT-TCTTTTAGCCAGATGAT-AATTTCTTATCATCTAATGGAAATAGCATTTTAGTAATTT-T
63 TAGTAT-ATTTGGGCACATG-TCAATTTCTTATCATATAAAGGAAAGGGCATTTT-GTAATTTCT
*
12898510 GTAGG
125 -TA-A
* * ** * *
12898515 GGATTATTTAGTAATTAATTATAAGATAAGAT-GTATTTTCATAATTATGATAAAATGGCCTAAT
1 GGATTATTTAGTAAATAATTATAAGA-AA-ATGGTATTTTCGTAATTATGATATGAGGGCATAAT
* * * * ** * * * * *
12898579 TGT-TAATTGGAGCATATGTCAATTCCCCATCATATAATGTAAAAGGTATTTTGGTAATTTTTTA
64 AGTATATTTGG-GCACATGTCAATTTCTTATCATATAAAGGAAAGGGCATTTT-GTAATTTCTTA
*
12898643 GG
127 -A
* * * * *
12898645 GGATTATTTGGTAAATAATTATAAGAGAA-GGAATATTTTCATAATTATGGTAAT-AAGGCATAA
1 GGATTATTTAGTAAATAATTATAAGAAAATGG--TATTTTCGTAATTATGAT-ATGAGGGCATAA
** * ** * * * *
12898708 TAGTCCATTT-GCCTATTTGTTAATTTCTTATCACATAATGGAAAAAGGC-TTTTGGATAATTTC
63 TAGTATATTTGGGC-ACATGTCAATTTCTTATCATATAAAGG-AAAGGGCATTTT-G-TAATTTC
* *
12898771 ATAG
124 TTAA
* * * * * *** ** *
12898775 GAGATTATTTAATAGATAATTATAA-AATATGGGTATTTTCGTAATAATGGTGCAAAAGAATAAT
1 G-GATTATTTAGTAAATAATTATAAGAAAAT-GGTATTTTCGTAATTATGATATGAGGGCATAAT
* ** * * *
12898839 AGTTTATTTGACCACATGTCAATTTCTTAT-ATGATAATGGAAAGAGTATTTTGGTAATTT-TAT
64 AGTATATTTGGGCACATGTCAATTTCTTATCAT-ATAAAGGAAAGGGCATTTT-GTAATTTCT-T
12898902 AAA
126 -AA
* * * * * *
12898905 AGATTATTTAGTAAATAATCATAA-AAGAAAGGTATTTCCTTAATTATTG-TATGAGGGCATCAT
1 GGATTATTTAGTAAATAATTATAAGAA-AATGGTATTTTCGTAATTA-TGATATGAGGGCATAAT
12898968 AGT
64 AGT
12898971 CCAATTAGCC
Statistics
Matches: 1065, Mismatches: 228, Indels: 139
0.74 0.16 0.10
Matches are distributed among these distances:
128 37 0.03
129 430 0.40
130 527 0.49
131 63 0.06
132 8 0.01
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.39
Consensus pattern (127 bp):
GGATTATTTAGTAAATAATTATAAGAAAATGGTATTTTCGTAATTATGATATGAGGGCATAATAG
TATATTTGGGCACATGTCAATTTCTTATCATATAAAGGAAAGGGCATTTTGTAATTTCTTAA
Found at i:12898013 original size:259 final size:259
Alignment explanation
Indices: 12897479--12898928 Score: 720
Period size: 259 Copynumber: 5.6 Consensus size: 259
12897469 ATTTCGTTGG
* * *
12897479 GGATTATTTAGTAAATAATTA-AAGGAGAATGAGTATTTTCGTAATTATGATATGAGAGCATAAT
1 GGATTATTTAGTAAATAATTATAA-GAAAATGGGTATTTTCGTAATTATGGTATGAGAGCATAAT
* * ** * ** ** *
12897543 TGTCAATTTGGCAACATGTCAATTTCTTATTGTATAAAAGAAATGA-CATTTTAGTAATTTCTTA
65 AGTAAATTCAGCCACATGTCAATTTCTTATCATATAATGGAAA-GAGCATTTTAGTAATTTCAT-
* * *
12897607 AAGTGA-TATATAGTAAATAATTATAAGAAAATGGTTATTTTCGTAATTAAGATATAAGGGCATA
128 AAGGGATTATTTAGTAAATAATTATAAGAAAATGGTTATTTTCGTAATTAAGATAAAAGGGCATA
* * *
12897671 ATAGTATATTTGGGCACATGTTAGTTTCTGATCAAATAATGGGATGGCTAGTTTTGTAATTTTGT
193 ATAGTATATTTGGGCACATGTTAATTTCTGATCAAATAATGGAAGGGCTAGTTTTGTAATTTTGT
12897736 AA
258 AA
* *
12897738 GGGTTATTTAGTAAATAATTATAATAAAATGGGTATTTTCGTAATTATGGTATGAGAGCATAATA
1 GGATTATTTAGTAAATAATTATAAGAAAATGGGTATTTTCGTAATTATGGTATGAGAGCATAATA
* * * *
12897803 GTAAATTCAGTCACATATCAATTTCTTATCAT-TAATGGAAAGAGTATTTTTGTAATTTCATAAG
66 GTAAATTCAGCCACATGTCAATTTCTTATCATATAATGGAAAGAGCATTTTAGTAATTTCATAAG
* * * * *
12897867 GGATTATTTAGTAATTATTTATAAGAAAATAGG-TATTTTCGTAATTATGATAAAATGG-AGTGA
131 GGATTATTTAGTAAATAATTATAAGAAAAT-GGTTATTTTCGTAATTAAGATAAAAGGGCA-TAA
* *
12897930 TAGTCA-ATTT-GGC-CATGTGTCAATTTCCT-TTCATATAATGGAAAGGGC-A-TTTTGATAAT
194 TAGT-ATATTTGGGCACATGT-T-AATTT-CTGATCAAATAATGG-AAGGGCTAGTTTTG-TAAT
*
12897989 TTCT-TAT
253 TT-TGTAA
* * * * *
12897996 GGCATTATTTTGTAAATAATTATAGGAGAAAA--GATATTTTCATAATTATAGTATGAGGGCATA
1 GG-ATTATTTAGTAAATAATTATA--AGAAAATGGGTATTTTCGTAATTATGGTATGAGAGCATA
** * * * * *
12898059 ATAGTTTATTCGGCCACATGTAAATTTCTTATCATATAATGGAAAGGGCATTTTGGTAAATTCAT
63 ATAGTAAATTCAGCCACATGTCAATTTCTTATCATATAATGGAAAGAGCATTTTAGTAATTTCAT
** * * * * ** ** * **
12898124 TGGGGTTTATTTAGTAAATAGTTATAGGAAAACGAATATTTTTATAATTATGATATGA-GGCATA
128 AAGGGATTATTTAGTAAATAATTATAAGAAAATGGTTATTTTCGTAATTAAGATAAAAGGGCATA
* * * * **** * *
12898188 ATTGT-TAATTTGGCCACATCTCAATTTCAT-ATTGTCTAAAGGAAAAGGC-A-TTTTGGTAATT
193 ATAGTAT-ATTTGGGCACATGTTAATTTC-TGATCAAATAATGG-AAGGGCTAGTTTT-GTAATT
12898249 TCT-TAAA
254 T-TGT-AA
* ** * * *
12898256 GGATTATTTAGTAAATAATTATAAGAGAAA-GAGTATTTTTATAATTATGATATAAAAGCATAAT
1 GGATTATTTAGTAAATAATTATAAGA-AAATGGGTATTTTCGTAATTATGGTATGAGAGCATAAT
* * * * * * * * * * * * **
12898320 GGTACATGT-GGACACATGTTACTTT-TTCATTAAATAATGGGATGGGTAGTTTT-GTAATTTTG
65 AGTAAAT-TCAGCCACATGTCAATTTCTT-ATCATATAATGGAAAGAGCA-TTTTAGTAATTTCA
* * * * ** *
12898382 TAAGGGA-TATTTAGTAAACAATTATAAGAGAACA-GG-TATTTTTGTAATTATGGTATGAGAGC
127 TAAGGGATTATTTAGTAAATAATTATAAGA-AA-ATGGTTATTTTCGTAATTAAGATAAAAGGGC
* * * * * * * * ** **
12898444 TTAATAAT-TCTTTTAGCCAGATGATAATTTCTTATCATCTAATGGAAATAGC-A-TTTTAGTAA
190 ATAATAGTAT-ATTTGGGCACATGTTAATTTCTGATCAAATAATGG-AAGGGCTAGTTTT-GTAA
*
12898506 TTTTGTAGG
252 TTTTGTA-A
* * * ** *
12898515 GGATTATTTAGTAATTAATTATAAGATAAGAT--GTATTTTCATAATTATGATAAAATG-GCCTA
1 GGATTATTTAGTAAATAATTATAAGA-AA-ATGGGTATTTTCGTAATTATGGTATGA-GAGCATA
* * * * * ** * * * *
12898577 ATTGTTAATTGGAG-CATATGTCAATTCCCCATCATATAATGTAAA-AGGTATTTTGGTAATTTT
63 ATAGTAAATT-CAGCCACATGTCAATTTCTTATCATATAATGGAAAGA-GCATTTTAGTAATTTC
* * * * * * * *
12898640 TTAGGGGATTATTTGGTAAATAATTATAAGAGAA-GGAATATTTTCATAATTATGGTAATAA-GG
126 ATAAGGGATTATTTAGTAAATAATTATAAGAAAATGG-TTATTTTCGTAATTAAGATAA-AAGGG
** * ** * * * *
12898703 CATAATAGTCCATTT-GCCTATTTGTTAATTTCTTATCACATAATGGAAAAAGGCT--TTTGGAT
189 CATAATAGTATATTTGGGC-ACATGTTAATTTCTGATCAAATAATGG--AAGGGCTAGTTTTG-T
** *
12898765 AATTTCATAG
250 AATTTTGTAA
* * * * *** * *
12898775 GAGATTATTTAATAGATAATTATAA-AATATGGGTATTTTCGTAATAATGGTGCAAAAGAATAAT
1 G-GATTATTTAGTAAATAATTATAAGAAAATGGGTATTTTCGTAATTATGGTATGAGAGCATAAT
** * * * *
12898839 AGTTTATT-TGACCACATGTCAATTTCTTAT-ATGATAATGGAAAGAGTATTTTGGTAATTTTAT
65 AGTAAATTCAG-CCACATGTCAATTTCTTATCAT-ATAATGGAAAGAGCATTTTAGTAATTTCAT
** *
12898902 AAAAGATTATTTAGTAAATAATCATAA
128 AAGGGATTATTTAGTAAATAATTATAA
12898929 AAGAAAGGTA
Statistics
Matches: 934, Mismatches: 196, Indels: 121
0.75 0.16 0.10
Matches are distributed among these distances:
256 5 0.01
257 20 0.02
258 160 0.17
259 451 0.48
260 251 0.27
261 47 0.05
ACGTcount: A:0.36, C:0.07, G:0.17, T:0.39
Consensus pattern (259 bp):
GGATTATTTAGTAAATAATTATAAGAAAATGGGTATTTTCGTAATTATGGTATGAGAGCATAATA
GTAAATTCAGCCACATGTCAATTTCTTATCATATAATGGAAAGAGCATTTTAGTAATTTCATAAG
GGATTATTTAGTAAATAATTATAAGAAAATGGTTATTTTCGTAATTAAGATAAAAGGGCATAATA
GTATATTTGGGCACATGTTAATTTCTGATCAAATAATGGAAGGGCTAGTTTTGTAATTTTGTAA
Found at i:12899730 original size:129 final size:129
Alignment explanation
Indices: 12899500--12899929 Score: 419
Period size: 129 Copynumber: 3.3 Consensus size: 129
12899490 TGGCCATATG
* ** *
12899500 TCAACTTT-TTATCATCTAATGGAAAGGTATTTGGGTAATTTCTTAGGGGATCATTTAGTAAATA
1 TCAA-TTTCTTATCATATAATGGAAAGGTATTTAAGTAATTTCTTAGGGGATTATTTAGTAAATA
* * * * *
12899564 ATTATAAGAGAA-GGGATATTATCATAACTATGATATAAGGGCATAATAGTCCATTTGACCTCAT
65 ATTATAAAAGAATGGG-TGTTTTCATAATTATGATATAAGGGCATAATAGTCCATTTGACCACAT
12899628 A
129 A
* * * *
12899629 TCAATTTCATATCATATAATGGAAAGAGCATTTAAGTAATTTCTT-GAGCGATTATTTA-TTAAT
1 TCAATTTCTTATCATATAATGGAAAG-GTATTTAAGTAATTTCTTAG-GGGATTATTTAGTAAAT
* * * *
12899692 AATTATAAAAGAATGGGTGTTTTCCTAATTATGGTATAAGGGCATAATACTTCATTTGACCACAT
64 AATTATAAAAGAATGGGTGTTTTCATAATTATGATATAAGGGCATAATAGTCCATTTGACCACAT
12899757 A
129 A
* * * ** *
12899758 TCAATTTTTTTTCATATAATGGAAATTGTATTTTCGTAATTT-TATAGGGGATTATTTAGTCAAT
1 TCAATTTCTTATCATATAATGGAAA-GGTATTTAAGTAATTTCT-TAGGGGATTATTTAGTAAAT
* * * ** * *
12899822 AATTAT-AAA-AATGTTGTGTTTTCGTAATTATGATATGAGGGTGTAATTGTCAATTTGACCACA
64 AATTATAAAAGAATG-GGTGTTTTCATAATTATGATATAAGGGCATAATAGTCCATTTGACCACA
*
12899885 TG
128 TA
*
12899887 TCAATTTCTTATCAT-TAAATGGAAAAGGTAGTTT-TGTAATTTC
1 TCAATTTCTTATCATAT-AATGG-AAAGGTA-TTTAAGTAATTTC
12899930 ATAAGGGGTT
Statistics
Matches: 247, Mismatches: 41, Indels: 25
0.79 0.13 0.08
Matches are distributed among these distances:
128 9 0.04
129 194 0.79
130 44 0.18
ACGTcount: A:0.34, C:0.10, G:0.16, T:0.40
Consensus pattern (129 bp):
TCAATTTCTTATCATATAATGGAAAGGTATTTAAGTAATTTCTTAGGGGATTATTTAGTAAATAA
TTATAAAAGAATGGGTGTTTTCATAATTATGATATAAGGGCATAATAGTCCATTTGACCACATA
Found at i:12900556 original size:258 final size:258
Alignment explanation
Indices: 12900005--12900973 Score: 764
Period size: 258 Copynumber: 3.7 Consensus size: 258
12899995 GTCAACTTAA
* * * *
12900005 TATCATATATTGGAAATTGTATTTTGA-AATTTTCATTGGGGATTATTTAGTAAATAATTATAAG
1 TATCATATAATGGAAA-GGTATTTTGATAATTTT-ATAGCGGATTATTTAGTAAATAATTATAAG
* ** * * * * * * * *
12900069 A-AAATGGGTATTTTCATAATTATGATATGAGGGCATAATAGTTAATTTGGCCACATGTAAATAT
64 AGAAA-GGATATTTTTGTAATTATGATATAAGAGCAAAATAGTCAATTTTGACACATGTCAATTT
* * * * * *
12900133 CTTAGCATAA-AATGGAAAAGGGCA-TTTTGATAATTTTATTAGAGATT-ATTTAGTAAATAATT
128 C-TATCA-AATAATGG-AAA-GGCAGTTTTGGTAATTTCATAAGGGATTAATTGA-TAAATAATT
** ** * * * * * *
12900195 ATAGGAGTAGGGGTA-TTTTCATAATTATGATATGACA-GCATAATTGTCAATTTGGCCACTTAT
188 ATAAAAAAAGAGGTACTTTT-ATAATTATGATATGA-AGGCATAATAGTCCATTTGACCACATGT
*
12900258 CAGTTTCT
251 CAATTTCT
* * *
12900266 TATTATATAATGGAAAAGGTATTTTGATAATTTCT-TAGCGGCTTATTTAGTAAATATTTATAAG
1 TATCATATAATGG-AAAGGTATTTTGATAATTT-TATAGCGGATTATTTAGTAAATAATTATAAG
* * * *
12900330 AGAAAGGCTATTTTTGTTATTATGATATAAGAGCAAAATAGT--ATATTTGAACACATGTTACTT
64 AGAAAGGATATTTTTGTAATTATGATATAAGAGCAAAATAGTCAAT-TTTG-ACACATGTCAATT
** * * *
12900393 TCTCATCAAATAATGGGATGGGTAGTTTT-GTAATTTCA-AAGGG-TT-ATTTATTAATAATTTA
127 TCT-ATCAAATAAT-GGAAAGGCAGTTTTGGTAATTTCATAAGGGATTAATTGATAAATAA-TTA
* *
12900454 TAAAAAAAG-GGATATTTTTGTAATTATGATATGAAGGCATAATAGTCCATTTGACCACATGTCA
189 TAAAAAAAGAGG-TACTTTTATAATTATGATATGAAGGCATAATAGTCCATTTGACCACATGTCA
12900518 ATTTCT
253 ATTTCT
* * *
12900524 TATCATTTAATGGAAAGGATATTTTCATAATTTTATAGAGGATTATTTAGTAAATAATTAT-AGT
1 TATCATATAATGGAAAGG-TATTTTGATAATTTTATAGCGGATTATTTAGTAAATAATTATAAG-
* * ** ** *
12900588 AG-AAGTGGTA-TTTTGTAATTATGATAAAAGAGCGCAATTTTCAATTTTGCCACATGTCAATTT
64 AGAAAG-GATATTTTTGTAATTATGATATAAGAGCAAAATAGTCAATTTTGACACATGTCAATTT
* * * * *
12900651 CTATCATATAATGGAAAGGCATTTTTGGTAATTTCATAGGGGATTAATTGGTAAATAATTATAAG
128 CTATCAAATAATGGAAAGGCAGTTTTGGTAATTTCATAAGGGATTAATTGATAAATAATTATAAA
* * *
12900716 AAAAGAGGTACTTTTATAATTATGATATGAGGGCATAATAGTACA-TTGAGCTACATGTCAATTT
193 AAAAGAGGTACTTTTATAATTATGATATGAAGGCATAATAGTCCATTTGA-CCACATGTCAATTT
12900780 CT
257 CT
* * * * *
12900782 TATCATAAAATGGAAAGGGCATTTTGATAATTTTATAACAGATTATTTAGTAAATAATTATAAAA
1 TATCATATAATGGAAA-GGTATTTTGATAATTTTATAGCGGATTATTTAGTAAATAATTATAAGA
* * *
12900847 GATA-GATATTTTTGTAATTATGCTATAAAAG-AATAATAGTTC-ATTTT-ATCACATGTCAATT
65 GAAAGGATATTTTTGTAATTATGATATAAGAGCAA-AATAG-TCAATTTTGA-CACATGTCAATT
* * * * * * * * * *
12900908 ACTGATCACATATTGGAAGGGGTA-TTTTAGTAATTTTATAAAGAATT-ATTTAGTAAATAATTA
127 TCT-ATCAAATAATGGAA-AGGCAGTTTTGGTAATTTCATAAGGGATTAATTGA-TAAATAATTA
12900971 TAA
189 TAA
12900974 CAGAAAAGTA
Statistics
Matches: 572, Mismatches: 100, Indels: 74
0.77 0.13 0.10
Matches are distributed among these distances:
255 10 0.02
256 18 0.03
257 69 0.12
258 273 0.48
259 71 0.12
260 19 0.03
261 98 0.17
262 13 0.02
263 1 0.00
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.39
Consensus pattern (258 bp):
TATCATATAATGGAAAGGTATTTTGATAATTTTATAGCGGATTATTTAGTAAATAATTATAAGAG
AAAGGATATTTTTGTAATTATGATATAAGAGCAAAATAGTCAATTTTGACACATGTCAATTTCTA
TCAAATAATGGAAAGGCAGTTTTGGTAATTTCATAAGGGATTAATTGATAAATAATTATAAAAAA
AGAGGTACTTTTATAATTATGATATGAAGGCATAATAGTCCATTTGACCACATGTCAATTTCT
Found at i:12900643 original size:129 final size:129
Alignment explanation
Indices: 12900005--12901014 Score: 763
Period size: 130 Copynumber: 7.8 Consensus size: 129
12899995 GTCAACTTAA
* ** * *
12900005 TATCATATATTGGAAATTGTATTTTGA-AATTTTCATTGGGGATTATTTAGTAAATAATTATA-A
1 TATCATATAATGGAAAGGGTATTTTGATAATTTT-ATAGAGGATTATTTAGTAAATAATTATAGA
* ** * * * * * *
12900068 GAAAATGGGTATTTTCATAATTATGATATGAGGGCATAATAGTTAATTTGGCCACATGTAAATAT
65 G-AAGT-GGTATTTTTGTAATTATGATATAAGAGCATAATAGTCAATTTTGCCACATGTCAATTT
12900133 CT
128 CT
* * *
12900135 TAGCATAAAATGGAAAAGGGCATTTTGATAATTTTATTAGA-GATTATTTAGTAAATAATTATAG
1 TATCATATAATGG-AAAGGGTATTTTGATAATTTTA-TAGAGGATTATTTAGTAAATAATTATA-
* * ** * * * * * * *
12900199 GAGTAGGGGTATTTTCATAATTATGATATGACAGCATAATTGTCAATTTGGCCACTTATCAGTTT
63 GAGAAGTGGTATTTTTGTAATTATGATATAAGAGCATAATAGTCAATTTTGCCACATGTCAATTT
12900264 CT
128 CT
* * * * *
12900266 TATTATATAATGGAAAAGGTATTTTGATAATTTCT-TAGCGGCTTATTTAGTAAATATTTATAAG
1 TATCATATAATGGAAAGGGTATTTTGATAATTT-TATAGAGGATTATTTAGTAAATAATTAT-AG
* * * * * *
12900330 AGAAAG-GCTATTTTTGTTATTATGATATAAGAGCAAAATAGT--ATATTTGAACACATGTTACT
64 AG-AAGTGGTATTTTTGTAATTATGATATAAGAGCATAATAGTCAAT-TTTG-CCACATGTCAAT
12900392 TTCT
126 TTCT
* * * * * * *
12900396 CATCAAATAATGGGATGGGTAGTTTTG-TAATTTCA-A-AGGGTTATTTA-TTAATAATTTATAA
1 TATCATATAATGGAAAGGGTA-TTTTGATAATTTTATAGAGGATTATTTAGTAAATAA-TTAT-A
* * *
12900457 AAAAAG-GGATATTTTTGTAATTATGATATGAAG-GCATAATAGTCCA-TTTGACCACATGTCAA
63 GAGAAGTGG-TATTTTTGTAATTATGATAT-AAGAGCATAATAGTCAATTTTG-CCACATGTCAA
12900519 TTTCT
125 TTTCT
* * *
12900524 TATCATTTAATGGAAAGGATATTTTCATAATTTTATAGAGGATTATTTAGTAAATAATTATAGTA
1 TATCATATAATGGAAAGGGTATTTTGATAATTTTATAGAGGATTATTTAGTAAATAATTATAG-A
* ** **
12900589 GAAGTGGTA-TTTTGTAATTATGATAAAAGAGCGCAATTTTCAATTTTGCCACATGTCAATTTC-
65 GAAGTGGTATTTTTGTAATTATGATATAAGAGCATAATAGTCAATTTTGCCACATGTCAATTTCT
* * * * * *
12900652 TATCATATAATGGAAA-GGCATTTTTGGTAATTTCATAGGGGATTAATTGGTAAATAATTATAAG
1 TATCATATAATGGAAAGGGTA-TTTTGATAATTTTATAGAGGATTATTTAGTAAATAATTAT-AG
* * * * * * ** *
12900716 AAAAGAGGTACTTTTATAATTATGATATGAGGGCATAATAGT-ACATTGAGCTACATGTCAATTT
64 AGAAGTGGTATTTTTGTAATTATGATATAAGAGCATAATAGTCA-ATTTTGCCACATGTCAATTT
12900780 CT
128 CT
* * *
12900782 TATCATAAAATGGAAAGGGCATTTTGATAATTTTATA-ACAGATTATTTAGTAAATAATTATA-A
1 TATCATATAATGGAAAGGGTATTTTGATAATTTTATAGA-GGATTATTTAGTAAATAATTATAGA
* * * * **
12900845 -AAGATAGATATTTTTGTAATTATGCTATAAAAGAATAATAGTTC-ATTTTATCACATGTCAATT
65 GAAG-T-GGTATTTTTGTAATTATGATATAAGAGCATAATAG-TCAATTTTGCCACATGTCAATT
*
12900908 ACT
127 TCT
* * * * * * *
12900911 GATCACATATTGGAAGGGGTATTTT-AGTAATTTTATAAAGAATTATTTAGTAAATAATTATAAC
1 TATCATATAATGGAAAGGGTATTTTGA-TAATTTTATAGAGGATTATTTAGTAAATAATTAT-AG
** * *
12900975 AGAA-AAGTATTTTCTGTAATTATGGTATAAGGGCATAATA
64 AGAAGTGGTATTTT-TGTAATTATGATATAAGAGCATAATA
12901015 ATCCTTTTGG
Statistics
Matches: 698, Mismatches: 139, Indels: 86
0.76 0.15 0.09
Matches are distributed among these distances:
127 18 0.03
128 149 0.21
129 193 0.28
130 208 0.30
131 117 0.17
132 11 0.02
133 2 0.00
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.39
Consensus pattern (129 bp):
TATCATATAATGGAAAGGGTATTTTGATAATTTTATAGAGGATTATTTAGTAAATAATTATAGAG
AAGTGGTATTTTTGTAATTATGATATAAGAGCATAATAGTCAATTTTGCCACATGTCAATTTCT
Found at i:12900907 original size:387 final size:385
Alignment explanation
Indices: 12900045--12900972 Score: 992
Period size: 387 Copynumber: 2.4 Consensus size: 385
12900035 TTTCATTGGG
* * ** *
12900045 GATTATTTAGTAAATAATTATAAGAAAATGGGTATTTTCATAATTATGATATGAGGGCATAATAG
1 GATTATTTAGTAAATAATTAT-A-AAAATAGATATTTTTGTAATTATGATATGAAGGCATAATAG
* * * * * * *
12900110 TTAATTTGGCCACATGTAAATATCTTAGCATAAAATGGAAAAGGGCATTTTGATAATTTTATTAG
64 TTCATTTGACCACATGTCAATTTCTTATCATATAATGG-AAAGGGTATTTT-ATAATTTTA-TAG
* ** *
12900175 A-GATTATTTAGTAAATAATTATAGGAGTAGGGGTATTTTCATAATTATGATATGACAGCATAAT
126 AGGATTATTTAGTAAATAATTATAGGAGAAGGGGTATTTTCATAATTATGATAAAACAGCACAAT
* * * * *
12900239 TGTCAATTTGGCCACTTATCAGTTTCTTATTATATAATGGAAAAGGTATTTTGATAATTTCTTAG
191 TGTCAATTTGGCCACATATCAATTTCTTATCATATAATGGAAAAGGCATTTTGATAATTTCATAG
* * * * * *
12900304 CGGCTTATTTAGTAAATATTTATAAGAGAAAGGCTATTTTTGTTATTATGATATAAGAGCAAAAT
256 CGGATTAATTAGTAAATAATTATAAGAGAAAGGCTACTTTTATAATTATGATATAAGAGCAAAAT
* * * * * * *
12900369 AGTATATTTGAACACATGTTACTTTCTCATCAAATAATGGGATGGGTAGTTTTGTAATTTCAAAG
321 AGTACATTTGAACACATGTCAATTTCTCATCAAATAATGGAAAGGGCAGTTTTGTAATTTCAAAA
* * *
12900434 GGTTATTTA-TTAATAATTTATAAAAAAAGGGATATTTTTGTAATTATGATATGAAGGCATAATA
1 GATTATTTAGTAAATAA-TTATAAAAATA--GATATTTTTGTAATTATGATATGAAGGCATAATA
* * *
12900498 GTCCATTTGACCACATGTCAATTTCTTATCATTTAATGGAAAGGATATTTTCATAATTTTATAGA
63 GTTCATTTGACCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTT-ATAATTTTATAGA
* * * * *
12900563 GGATTATTTAGTAAATAATTATAGTAGAAGTGGTATTTT-GTAATTATGATAAAAGAGCGCAATT
127 GGATTATTTAGTAAATAATTATAGGAGAAGGGGTATTTTCATAATTATGATAAAACAGCACAATT
* * * *
12900627 TTCAATTTTGCCACATGTCAATTTC-TATCATATAATGG-AAAGGCATTTTTGGTAATTTCATAG
192 GTCAATTTGGCCACATATCAATTTCTTATCATATAATGGAAAAGGCA-TTTTGATAATTTCATAG
* * * * * *
12900690 GGGATTAATTGGTAAATAATTATAAGA-AAAGAGGTACTTTTATAATTATGATATGAGGGCATAA
256 CGGATTAATTAGTAAATAATTATAAGAGAAAG-GCTACTTTTATAATTATGATATAAGAGCAAAA
* * *
12900754 TAGTACA-TTGAGCTACATGTCAATTTCTTATCATAA-AATGGAAAGGGCA-TTTTGATAATTTT
320 TAGTACATTTGAAC-ACATGTCAATTTCTCATCA-AATAATGGAAAGGGCAGTTTTG-TAATTTC
12900816 ATAACA
382 A-AA-A
* * * *
12900822 GATTATTTAGTAAATAATTATAAAAGATAGATATTTTTGTAATTATGCTATAAAAGAATAATAGT
1 GATTATTTAGTAAATAATTATAAAA-ATAGATATTTTTGTAATTATGATATGAAGGCATAATAGT
* * * * * * * * *
12900887 TCATTTTATCACATGTCAATTACTGATCACATATTGGAAGGGGTATTTTAGTAATTTTATAAAGA
65 TCATTTGACCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTA-TAATTTTATAGAGG
12900952 ATTATTTAGTAAATAATTATA
129 ATTATTTAGTAAATAATTATA
12900973 ACAGAAAAGT
Statistics
Matches: 447, Mismatches: 78, Indels: 30
0.81 0.14 0.05
Matches are distributed among these distances:
385 20 0.04
386 114 0.26
387 155 0.35
388 77 0.17
389 81 0.18
ACGTcount: A:0.37, C:0.07, G:0.16, T:0.39
Consensus pattern (385 bp):
GATTATTTAGTAAATAATTATAAAAATAGATATTTTTGTAATTATGATATGAAGGCATAATAGTT
CATTTGACCACATGTCAATTTCTTATCATATAATGGAAAGGGTATTTTATAATTTTATAGAGGAT
TATTTAGTAAATAATTATAGGAGAAGGGGTATTTTCATAATTATGATAAAACAGCACAATTGTCA
ATTTGGCCACATATCAATTTCTTATCATATAATGGAAAAGGCATTTTGATAATTTCATAGCGGAT
TAATTAGTAAATAATTATAAGAGAAAGGCTACTTTTATAATTATGATATAAGAGCAAAATAGTAC
ATTTGAACACATGTCAATTTCTCATCAAATAATGGAAAGGGCAGTTTTGTAATTTCAAAA
Found at i:12902146 original size:129 final size:130
Alignment explanation
Indices: 12901951--12902541 Score: 493
Period size: 129 Copynumber: 4.6 Consensus size: 130
12901941 GCTAATTACT
* * * * * * * * *
12901951 TAAGGGATTGTATAATAAATAATTATAAGAAAAGGGGTATTTTTGTAATTGTGATATAAG-GTCA
1 TAAGGGATTATTTAGTAAATAATTATAAGAGAATGAGTATTTTTGTAATTATGGTATGAGAG-CA
* * * *
12902015 TAATAGTCTAATTGACCTCATGTCAATTTTTTATCATAAAATGGAAAGGGCATTTAAGTAATTT-
65 TAATAGTCCATTTGACCTCATGTCAATTTCTTATCATAAAATGGAAAGAGCATTTAAGTAATTTC
*
12902079 T
130 A
* * * *
12902080 TGAA-AGATTATTTAGTAAATAATTATAAGAGAATGAGCATTTTCGTAATTGTGGTATGAGAGCA
1 T-AAGGGATTATTTAGTAAATAATTATAAGAGAATGAGTATTTTTGTAATTATGGTATGAGAGCA
* * * * * * **
12902144 TAATATTCCATTTAACCTCATGTCAATTTCCTGTCATACAATAGAAA-AGCATTTTGGTAATTTC
65 TAATAGTCCATTTGACCTCATGTCAATTTCTTATCATAAAATGGAAAGAGCATTTAAGTAATTTC
*
12902208 C
130 A
* * * * * * ***
12902209 TGAGTGATTATTTAGTAAATAATTCTAAAAGAATGGGTATTTTTGTAATTATGGCATGAGAGTGC
1 TAAGGGATTATTTAGTAAATAATTATAAGAGAATGAGTATTTTTGTAATTATGGTATGAGAGCAT
* * * ** * **
12902274 AGTA-TCCATTTG-GCTACATGTCAATTTCTTATAATATGATGGAAAAAGCATTTTGGTAATTTC
66 AATAGTCCATTTGACCT-CATGTCAATTTCTTATCATAAAATGGAAAGAGCATTTAAGTAATTTC
12902337 A
130 A
* * **
12902338 TAAGGGATTATTTAGTAACTAATTATAAG-G-ACGAGTATTTTTGTAATTATGGTATGAGAAAAT
1 TAAGGGATTATTTAGTAAATAATTATAAGAGAATGAGTATTTTTGTAATTATGGTATGAGAGCAT
* ** * * ** * * *
12902401 AATAGTCTATTTGGTCACATATTGATTT-TTATCATAGAATGGAATGAACATTTTAA-TAATTTC
66 AATAGTCCATTTGACCTCATGTCAATTTCTTATCATAAAATGGAAAGAGCA-TTTAAGTAATTTC
12902464 A
130 A
* * *** *
12902465 TAAGGGATTCTTTAGTAAATAATTATAAGAGAAAG-GTATTTCCATAATTATGGTATGAGGGCAT
1 TAAGGGATTATTTAGTAAATAATTATAAGAGAATGAGTATTTTTGTAATTATGGTATGAGAGCAT
12902529 AATAGTCCATTTG
66 AATAGTCCATTTG
12902542 GCTTAGAGAT
Statistics
Matches: 368, Mismatches: 83, Indels: 23
0.78 0.18 0.05
Matches are distributed among these distances:
127 82 0.22
128 99 0.27
129 184 0.50
130 3 0.01
ACGTcount: A:0.36, C:0.08, G:0.18, T:0.38
Consensus pattern (130 bp):
TAAGGGATTATTTAGTAAATAATTATAAGAGAATGAGTATTTTTGTAATTATGGTATGAGAGCAT
AATAGTCCATTTGACCTCATGTCAATTTCTTATCATAAAATGGAAAGAGCATTTAAGTAATTTCA
Found at i:12903313 original size:134 final size:129
Alignment explanation
Indices: 12903044--12903404 Score: 304
Period size: 134 Copynumber: 2.8 Consensus size: 129
12903034 CCACATGTAG
* *
12903044 ATTTCATATCATATAATGGAAAGAGCATTTTGATAACTTCTTAAGGAATTGCTTTGTAAATAATT
1 ATTTCTTATCATATAATGGAAAGAGCATTTTGATAACTTCTTAAGGAATTGATTTGTAAATAATT
* *
12903109 ATAAAAAAAGGGTTTTTTTATAGTTATGATATAAAGACATAATAGTCAATTCAACCATAAGTCA
66 ATAAAAAAAGGGTTTTTTCATAGTTATGATATAAAGACATAATAGTCAATTCAACCATAAATCA
* * * *
12903173 AATTCTTATCACATAATGGAAATGA-CATTTT-AGTAATTTCTTGAGGGATTATTGATTTGCTAA
1 ATTTCTTATCATATAATGGAAA-GAGCATTTTGA-TAACTTCTT-AAGGA--ATTGATTTG-TAA
* * * * * * * * **
12903236 ATAATTATAAGAGAATGGGTTTTTTCGTAGTTATGGTATGAGGGCATAATATTGC-ATTTGACCA
60 ATAATTATAA-AAAAAGGGTTTTTTCATAGTTATGATATAAAGACATAATAGT-CAATTCAACCA
12903300 -AATATCA
123 TAA-ATCA
* * * * * *
12903307 ATTTCTTATCATATAATGGAAA-AGTTATTTTTG-TAGCTTCATAGGGGATT-ATTTAGCAAATA
1 ATTTCTTATCATATAATGGAAAGAG-CA-TTTTGATAACTTCTTAAGGAATTGATTT-GTAAATA
* ** *
12903369 ATTATAAGAAAAGGGGTAATTTCATAATTATGATAT
63 ATTATAA-AAAAAGGGTTTTTTCATAGTTATGATAT
12903405 GAAGGAGTAA
Statistics
Matches: 185, Mismatches: 33, Indels: 27
0.76 0.13 0.11
Matches are distributed among these distances:
128 1 0.01
129 33 0.18
130 44 0.24
131 4 0.02
132 9 0.05
133 19 0.10
134 70 0.38
135 5 0.03
ACGTcount: A:0.37, C:0.08, G:0.16, T:0.38
Consensus pattern (129 bp):
ATTTCTTATCATATAATGGAAAGAGCATTTTGATAACTTCTTAAGGAATTGATTTGTAAATAATT
ATAAAAAAAGGGTTTTTTCATAGTTATGATATAAAGACATAATAGTCAATTCAACCATAAATCA
Found at i:12904988 original size:58 final size:59
Alignment explanation
Indices: 12904898--12905022 Score: 189
Period size: 58 Copynumber: 2.1 Consensus size: 59
12904888 TTTGGATGAG
* * *
12904898 GAAAAAAAACTTAGTTATTTCTTTCTCTACCAA-TCCATCACTTGGCTTTATAATTAGA
1 GAAAAAAAACTCAGTTATTTCCTTCTCTACCAACCCCATCACTTGGCTTTATAATTAGA
* *
12904956 GAAAAAAAACTCAGTTATTTCCTTCTCTACCAACCCCATCATTTGGCTTTATAATTAGT
1 GAAAAAAAACTCAGTTATTTCCTTCTCTACCAACCCCATCACTTGGCTTTATAATTAGA
*
12905015 GAATAAAA
1 GAAAAAAA
12905023 CCAAAATGCT
Statistics
Matches: 60, Mismatches: 6, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
58 31 0.52
59 29 0.48
ACGTcount: A:0.36, C:0.20, G:0.09, T:0.35
Consensus pattern (59 bp):
GAAAAAAAACTCAGTTATTTCCTTCTCTACCAACCCCATCACTTGGCTTTATAATTAGA
Found at i:12914603 original size:39 final size:39
Alignment explanation
Indices: 12914527--12914605 Score: 95
Period size: 39 Copynumber: 2.0 Consensus size: 39
12914517 CTTTACATGT
* * * **
12914527 TCTTGCACCTCTATGGCCGTTCTCCATGTGAGGGATGGA
1 TCTTGCACCTCCATGGCCATTCTCCATGTCAAAGATGGA
* *
12914566 TCTTTCACCTCCATGGCTATTCTCCATGTCAAAGATGGA
1 TCTTGCACCTCCATGGCCATTCTCCATGTCAAAGATGGA
12914605 T
1 T
12914606 GTAATTGGAC
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.19, C:0.27, G:0.22, T:0.33
Consensus pattern (39 bp):
TCTTGCACCTCCATGGCCATTCTCCATGTCAAAGATGGA
Found at i:12915522 original size:23 final size:20
Alignment explanation
Indices: 12915473--12915511 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
12915463 ACAAACAAAC
*
12915473 AAAAAAAAGAAAGAAAAGAA
1 AAAAAAAAGAAGGAAAAGAA
12915493 AAAAAAAAGAAGGAAAAGA
1 AAAAAAAAGAAGGAAAAGA
12915512 TGAATAAAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (20 bp):
AAAAAAAAGAAGGAAAAGAA
Found at i:12915528 original size:23 final size:19
Alignment explanation
Indices: 12915473--12915530 Score: 55
Period size: 23 Copynumber: 2.8 Consensus size: 19
12915463 ACAAACAAAC
*
12915473 AAAAAAAAGAAA-GAAAAG
1 AAAAAAAAAAAAGGAAAAG
12915491 AAAAAAAAAAGAAGGAAAAG
1 AAAAAAAAAA-AAGGAAAAG
12915511 ATGAATAAAAAATAAAGGAA
1 A--AA-AAAAAA-AAAGGAA
12915531 GACTCATAAT
Statistics
Matches: 33, Mismatches: 1, Indels: 7
0.80 0.02 0.17
Matches are distributed among these distances:
18 9 0.27
19 2 0.06
20 7 0.21
22 2 0.06
23 12 0.36
24 1 0.03
ACGTcount: A:0.78, C:0.00, G:0.17, T:0.05
Consensus pattern (19 bp):
AAAAAAAAAAAAGGAAAAG
Found at i:12916533 original size:50 final size:51
Alignment explanation
Indices: 12916471--12916623 Score: 170
Period size: 50 Copynumber: 3.1 Consensus size: 51
12916461 AAAAAGATAT
* *
12916471 TTTTTAAAGTTTCAAAGCCTTTATTTAAAGAG-AGCAATTTTCAAACAAGA
1 TTTTTAAAGTTTCAAAGCCTCTATTTAAAGAGAAACAATTTTCAAACAAGA
* * * *
12916521 TGTTTT-AAGTTTCAAAACCTCTATTT-AGGGGAAACCATTTTCAAACAAGA
1 T-TTTTAAAGTTTCAAAGCCTCTATTTAAAGAGAAACAATTTTCAAACAAGA
* * * * *
12916571 TTTTTAAAGTTTCAAAGCCTCTATTT-AGGGGGAACCATTTTTAAACAAGA
1 TTTTTAAAGTTTCAAAGCCTCTATTTAAAGAGAAACAATTTTCAAACAAGA
12916621 TTT
1 TTT
12916624 AAAAAAAGAA
Statistics
Matches: 91, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
49 7 0.08
50 80 0.88
51 4 0.04
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.37
Consensus pattern (51 bp):
TTTTTAAAGTTTCAAAGCCTCTATTTAAAGAGAAACAATTTTCAAACAAGA
Found at i:12921893 original size:151 final size:151
Alignment explanation
Indices: 12921718--12921992 Score: 415
Period size: 151 Copynumber: 1.8 Consensus size: 151
12921708 AGCATGCACA
* *
12921718 ACCTATGACTTATTTTCAGCTTTCATTCCTTATGTTTTCCCACATCCAAAATTTATTGTTCATAC
1 ACCTATGACCTATTTTCAGCTTTCATTCCTTATGTTTTCCCACAACCAAAATTTATTGTTCATAC
* * * * *
12921783 AGTGGTTGAGTAAGCAAAGTCATACAAAGAAAGTCAAGCCAAACAAAAATAAAAAGGGAATAACT
66 ACTGGTTGAGCAAGCAAAGTCATACAAAGAAAGCCAAACAAAACAAAAATAAAAAGGGAATAACT
12921848 ACTTCATGTGAGGCATGCGTT
131 ACTTCATGTGAGGCATGCGTT
* * * *
12921869 ACCTATGGCCTATTTTTAGCTTTCATTCTTTATGTTTTCCTACAACCAAAATTTATTGTTCATAC
1 ACCTATGACCTATTTTCAGCTTTCATTCCTTATGTTTTCCCACAACCAAAATTTATTGTTCATAC
* * * *
12921934 ACTGGTTGAGCAAGCAAAGTGATACGAAGAAAGCCAAACAAAACAAGAATAAAGAGGGA
66 ACTGGTTGAGCAAGCAAAGTCATACAAAGAAAGCCAAACAAAACAAAAATAAAAAGGGA
12921993 CCAACTAAGT
Statistics
Matches: 109, Mismatches: 15, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
151 109 1.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.30
Consensus pattern (151 bp):
ACCTATGACCTATTTTCAGCTTTCATTCCTTATGTTTTCCCACAACCAAAATTTATTGTTCATAC
ACTGGTTGAGCAAGCAAAGTCATACAAAGAAAGCCAAACAAAACAAAAATAAAAAGGGAATAACT
ACTTCATGTGAGGCATGCGTT
Found at i:12922031 original size:151 final size:151
Alignment explanation
Indices: 12921728--12922043 Score: 389
Period size: 151 Copynumber: 2.1 Consensus size: 151
12921718 ACCTATGACT
* * *
12921728 TATTTTCAGCTTTCATTCCTTATGTTTTCCCACATCCAAAATTTATTGTTCATACAGTGGTTGAG
1 TATTTTTAGCTTTCATTCCTTATGTTTTCCCACAACCAAAATTTATTGTTCATACACTGGTTGAG
* * * * * ** **
12921793 TAAGCAAAGTCATACAAAGAAAGTCAAGCCAAACAAAAATAAAAAGGGAATAACTACTTCATGTG
66 CAAGCAAAGTCATACAAAGAAAGCCAAACAAAACAAAAATAAAAAGGGAACAACTAAGTCACATG
* * *
12921858 AGGCATGCGTTACCTATGGCC
131 AAGCATGCGTTACATATAGCC
* *
12921879 TATTTTTAGCTTTCATTCTTTATGTTTTCCTACAACCAAAATTTATTGTTCATACACTGGTTGAG
1 TATTTTTAGCTTTCATTCCTTATGTTTTCCCACAACCAAAATTTATTGTTCATACACTGGTTGAG
* * * * *
12921944 CAAGCAAAGTGATACGAAGAAAGCCAAACAAAACAAGAATAAAGAGGGACCAACTAAGTCACATG
66 CAAGCAAAGTCATACAAAGAAAGCCAAACAAAACAAAAATAAAAAGGGAACAACTAAGTCACATG
** * *
12922009 AAGTTTGCTTTATATATAGCC
131 AAGCATGCGTTACATATAGCC
*
12922030 TATTTTTAACTTTC
1 TATTTTTAGCTTTC
12922044 TATTTTCTAT
Statistics
Matches: 138, Mismatches: 27, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
151 138 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (151 bp):
TATTTTTAGCTTTCATTCCTTATGTTTTCCCACAACCAAAATTTATTGTTCATACACTGGTTGAG
CAAGCAAAGTCATACAAAGAAAGCCAAACAAAACAAAAATAAAAAGGGAACAACTAAGTCACATG
AAGCATGCGTTACATATAGCC
Found at i:12923284 original size:144 final size:146
Alignment explanation
Indices: 12923068--12923414 Score: 404
Period size: 145 Copynumber: 2.4 Consensus size: 146
12923058 TTGAGATTTT
* * * * * **
12923068 AATGCACCAAAAATTATAAAATACTATAGAATTAAGATATGGAATGTTTCA-TGAAATTCGGAGC
1 AATGCACCAAAAATAATGAAATATTATAAAATTAAGATTTGGAATGTTTCACAAAAATTCGGAGC
*
12923132 TCAAAAAAGTTAAATTATGAAAATAC-CCTCATAA-GGTA-TTTTGGTAAGTTCATCCTTTCT-A
66 TCAAAAAAGCTAAATTATGAAAATACTCCT-ATAATGGTATTTTTGGTAA-TTCATCCTTTCTCA
12923193 AGGTA-TTGCTATGATTTCA
129 AGGTACTT--TATGATTTCA
* * * * *
12923212 AATGCTCTAAAAATAATGAAATATTATGAAATTAAGATTTGGAAAGTTTCACAAAAATT-TGAGC
1 AATGCACCAAAAATAATGAAATATTATAAAATTAAGATTTGGAATGTTTCACAAAAATTCGGAGC
* * ** *
12923276 TCGAAAAAGCTAAATTATGAAAATACTCCTATAATGTTATTTTTGGTAATTTTTCCTTTTTCAAG
66 TCAAAAAAGCTAAATTATGAAAATACTCCTATAATGGTATTTTTGGTAATTCATCCTTTCTCAAG
*
12923341 GTACTTTATGATTTTA
131 GTACTTTATGATTTCA
* *
12923357 AATGCACCAAAAATCATGAAATATTATAAAATTAA-ACTTTGGAATGCTTCACAAAAAT
1 AATGCACCAAAAATAATGAAATATTATAAAATTAAGA-TTTGGAATGTTTCACAAAAAT
12923415 CCAAGTTTAG
Statistics
Matches: 171, Mismatches: 25, Indels: 13
0.82 0.12 0.06
Matches are distributed among these distances:
144 75 0.44
145 79 0.46
146 15 0.09
147 2 0.01
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.35
Consensus pattern (146 bp):
AATGCACCAAAAATAATGAAATATTATAAAATTAAGATTTGGAATGTTTCACAAAAATTCGGAGC
TCAAAAAAGCTAAATTATGAAAATACTCCTATAATGGTATTTTTGGTAATTCATCCTTTCTCAAG
GTACTTTATGATTTCA
Found at i:12923446 original size:145 final size:143
Alignment explanation
Indices: 12923068--12923419 Score: 361
Period size: 144 Copynumber: 2.4 Consensus size: 143
12923058 TTGAGATTTT
* * * * * * * ** * **
12923068 AATGCACCAAAAATTATAAAATACTATAGAATTAAGATATGGAATGTTTCATGAAATTCGGAGCT
1 AATGCACCAAAAATAATGAAATATTATAAAATTAAGATTTGGAAAGCTTCACAAAAATCCAAGCT
* *
12923133 CAAAAAAGTTAAATTATGAAAATACCCTCATAAGGTATTTTGGTAAGTTCATCCTTTCTAAGGTA
66 CGAAAAAGCTAAATTATGAAAATACCCTCATAAGGTATTTTGGTAAGTTCATCCTTTCTAAGGTA
12923198 TTGCTATGATTTCA
131 TT-CTATGATTTCA
* * * * ***
12923212 AATGCTCTAAAAATAATGAAATATTATGAAATTAAGATTTGGAAAGTTTCACAAAAATTTGAGCT
1 AATGCACCAAAAATAATGAAATATTATAAAATTAAGATTTGGAAAGCTTCACAAAAATCCAAGCT
* ** *
12923277 CGAAAAAGCTAAATTATGAAAATACTCCT-ATAATGTTATTTTTGGTAA-TTTTTCCTTTTTCAA
66 CGAAAAAGCTAAATTATGAAAATAC-CCTCATAA-GGTA-TTTTGGTAAGTTCATCCTTTCT-AA
*
12923340 GGTACTT-TATGATTTTA
127 GGTA-TTCTATGATTTCA
* *
12923357 AATGCACCAAAAATCATGAAATATTATAAAATTAA-ACTTTGGAATGCTTCACAAAAATCCAAG
1 AATGCACCAAAAATAATGAAATATTATAAAATTAAGA-TTTGGAAAGCTTCACAAAAATCCAAG
12923420 TTTAGGAAGG
Statistics
Matches: 172, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
144 79 0.46
145 76 0.44
146 15 0.09
147 2 0.01
ACGTcount: A:0.41, C:0.12, G:0.13, T:0.34
Consensus pattern (143 bp):
AATGCACCAAAAATAATGAAATATTATAAAATTAAGATTTGGAAAGCTTCACAAAAATCCAAGCT
CGAAAAAGCTAAATTATGAAAATACCCTCATAAGGTATTTTGGTAAGTTCATCCTTTCTAAGGTA
TTCTATGATTTCA
Found at i:12924026 original size:34 final size:34
Alignment explanation
Indices: 12923976--12925210 Score: 609
Period size: 34 Copynumber: 36.6 Consensus size: 34
12923966 GATAACCGGG
*
12923976 ATTAAACTATGAGTCAAAAATAAAAATGACTGGA
1 ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
* * * * **
12924010 ATTGAACCATGGGTCAAAGAATAAAAGTAAC-CAA
1 ATTAAACCATGAGTCAAA-AATAAAAATGACTGGA
*
12924044 GATTAAACCATG-GTTCAAAAATAAAAATGACCAGG-
1 -ATTAAACCATGAG-TCAAAAATAAAAATGA-CTGGA
* ** * *
12924079 ATTAAACCAT-AGGTCAGAGAATAATGACGA-TCGA
1 ATTAAACCATGA-GTCA-AAAATAAAAATGACTGGA
* * * *
12924113 GATTAAATCATGAATCAGAAATGAAAATGACTAGG-
1 -ATTAAACCATGAGTCAAAAATAAAAATGACT-GGA
* * ** *
12924148 ATTGAACCATGAGTCAGAGAATAAAAACAACTGAA
1 ATTAAACCATGAGTCA-AAAATAAAAATGACTGGA
* * * *
12924183 ATAAAACCATGGGTCAAAAAATAAAAACGA-TCGA
1 ATTAAACCATGAGTC-AAAAATAAAAATGACTGGA
* *
12924217 GATT-AACCTATGAGTCAAAAATAAAAAT-AATCGGG
1 -ATTAAACC-ATGAGTCAAAAATAAAAATGACT-GGA
* * * * *
12924252 ATTAAACCATGAGTTAAAAATAAAACTTATTGAA
1 ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
* * *
12924286 ATTAAACCATGAGTTAGAAATAAAAATGA-TCGA
1 ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
* * * *
12924319 GATTAAATCATGAGTCGAAAATAAAAATAACCCGG-
1 -ATTAAACCATGAGTCAAAAATAAAAATGA-CTGGA
* **
12924354 GTTAAACCATGAGTCAAAAAT--AACCGA---G-
1 ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
*
12924382 ATTAAACCAT-AGATCAAAAATAAAAATGA-TCGAA
1 ATTAAACCATGAG-TCAAAAATAAAAATGACT-GGA
*
12924416 ATTAAACCATGGGTCAGAAAATAAAAATGACCTGG-
1 ATTAAACCATGAGTCA-AAAATAAAAATGA-CTGGA
* *
12924451 ATTAAACCATAAGTCAAAAAT-AAAATGACTGGG
1 ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
12924484 ATTAAACCAT-AGGTCAAAAATAAAAATGACTAGG-
1 ATTAAACCATGA-GTCAAAAATAAAAATGACT-GGA
* **
12924518 ATTAAAGCATGAGTCAAAAAT--AACCGA---G-
1 ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
* *
12924546 ATTAAACCAT-AGATCAAAAATAAAAATGACCGAA
1 ATTAAACCATGAG-TCAAAAATAAAAATGACTGGA
* *
12924580 ATTAAACCATGGGTCAGAAAATAAAAAAGACCTGG-
1 ATTAAACCATGAGTCA-AAAATAAAAATGA-CTGGA
*
12924615 ATTAAACCATAAGTCAAAAAT-AAAATGACTAGG-
1 ATTAAACCATGAGTCAAAAATAAAAATGACT-GGA
12924648 ATTAAACCAT-AGGTCAAAAATAAAAATGACTAGG-
1 ATTAAACCATGA-GTCAAAAATAAAAATGACT-GGA
* *
12924682 ATTAAAGCATGAGTCAGAAAATAAAAATGA-TCGGG
1 ATTAAACCATGAGTCA-AAAATAAAAATGACT-GGA
* *
12924717 ATTAAACCATGAGACAAAAAT--AAAT-ACT-AA
1 ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
* * * ** * *
12924747 GATTGAACCATGGGTCAGAGAATAACGACGA-TCGA
1 -ATTAAACCATGAGTCA-AAAATAAAAATGACTGGA
**
12924782 GATTAAACCATGAGTCAAAAATAAAAATGA-TCAA
1 -ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
* ** * * *
12924816 GATTGAACCATGAGTCAAAGAATAATGACGACCGAA
1 -ATTAAACCATGAGTCAAA-AATAAAAATGACTGGA
** *
12924852 ATTAAACCATGAGTTGAAAATAAAAATGACTGGG
1 ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
* ** **
12924886 ATTAAACTATG-GTCAAAAATAAAAGCGAC-CAA
1 ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
* * * ** * *
12924918 GATTAAATCATGGGTCAGAGAATAATGACGA-TAGA
1 -ATTAAACCATGAGTCA-AAAATAAAAATGACTGGA
*** *
12924953 GATTAAACCATGAGTTGGAAATAAAAATGACCGG-
1 -ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
* * * ** *
12924987 GTTAAACCATGGGTCAAAAATAAAAACGGGTGGG
1 ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
* *
12925021 ATTAAACCATGGGTCAAAGAATAATGACAAT--CAGG-
1 ATTAAACCATGAGTCAAA-AATAA--A-AATGACTGGA
* *
12925056 ATTAAACTATGAGTCAAAAATAAAAATAACCTGG-
1 ATTAAACCATGAGTCAAAAATAAAAATGA-CTGGA
* * *
12925090 ATTAAACCATGAGTC-GAAAT-AAAACGACCAGG-
1 ATTAAACCATGAGTCAAAAATAAAAATGA-CTGGA
* * * ** * *
12925122 ATTAAACCATGGGTTAGAAATAAAAACAACCGGG
1 ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
* ** *
12925156 ATTGAACCAT-AGGTCAAAGAATAATGATGATTGAGA
1 ATTAAACCATGA-GTCAAA-AATAAAAATGACTG-GA
*
12925192 A-TAAACCATAAGTCAAAAA
1 ATTAAACCATGAGTCAAAAA
12925211 ATAGATGTGA
Statistics
Matches: 922, Mismatches: 193, Indels: 172
0.72 0.15 0.13
Matches are distributed among these distances:
27 4 0.00
28 36 0.04
30 8 0.01
31 17 0.02
32 47 0.05
33 116 0.13
34 387 0.42
35 289 0.31
36 14 0.02
37 2 0.00
38 2 0.00
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (34 bp):
ATTAAACCATGAGTCAAAAATAAAAATGACTGGA
Found at i:12924041 original size:69 final size:67
Alignment explanation
Indices: 12923967--12925147 Score: 713
Period size: 69 Copynumber: 17.5 Consensus size: 67
12923957 GAGAATAATG
* * * *
12923967 ATAACCGGGATTAAACTATGAGTCAAAAATAAAAATGACTGGAATTGAACCATGGGTCAAAGAAT
1 ATAACCGAGATTAAACCATGAGTCAAAAATAAAAATGACTGG-ATTAAACCATGAGTCAAA-AAT
12924032 AAAA
64 AAAA
* * * *
12924036 GTAACCAAGATTAAACCATG-GTTCAAAAATAAAAATGACCAGGATTAAACCAT-AGGTCAGAGA
1 ATAACCGAGATTAAACCATGAG-TCAAAAATAAAAATGA-CTGGATTAAACCATGA-GTCA-AAA
**
12924099 ATAATG
62 ATAAAA
** * * * * * * *
12924105 ACGATCGAGATTAAATCATGAATCAGAAATGAAAATGACTAGGATTGAACCATGAGTCAGAGAAT
1 ATAACCGAGATTAAACCATGAGTCAAAAATAAAAATGACT-GGATTAAACCATGAGTCA-AAAAT
12924170 AAAA
64 AAAA
* * * * * *
12924174 ACAACTGAAATAAAACCATGGGTCAAAAAATAAAAACGA-TCGAGATT-AACCTATGAGTCAAAA
1 ATAACCGAGATTAAACCATGAGTC-AAAAATAAAAATGACT-G-GATTAAACC-ATGAGTCAAAA
12924237 ATAAAA
62 ATAAAA
* * * * * * * * *
12924243 ATAATCGGGATTAAACCATGAGTTAAAAATAAAACTTATTGAAATTAAACCATGAGTTAGAAATA
1 ATAACCGAGATTAAACCATGAGTCAAAAATAAAAATGACTG-GATTAAACCATGAGTCAAAAATA
12924308 AAA
65 AAA
* * * * * * *
12924311 ATGATCGAGATTAAATCATGAGTCGAAAATAAAAATAACCCGGGTTAAACCATGAGTC------A
1 ATAACCGAGATTAAACCATGAGTCAAAAATAAAAATGA-CTGGATTAAACCATGAGTCAAAAATA
12924370 AAA
65 AAA
* *
12924373 ATAACCGAGATTAAACCAT-AGATCAAAAATAAAAATGA-TCGAAATTAAACCATGGGTCAGAAA
1 ATAACCGAGATTAAACCATGAG-TCAAAAATAAAAATGACT-G-GATTAAACCATGAGTCA-AAA
12924436 ATAAAA
62 ATAAAA
* *
12924442 ATGACCTG-GATTAAACCATAAGTCAAAAAT-AAAATGACTGGGATTAAACCAT-AGGTCAAAAA
1 ATAACC-GAGATTAAACCATGAGTCAAAAATAAAAATGACT-GGATTAAACCATGA-GTCAAAAA
12924504 TAAAA
63 TAAAA
* * * **
12924509 ATGA-CTAGGATTAAAGCATGAGTCAAAAAT--AACCGA---GATTAAACCAT-AGATCAAAAAT
1 ATAACCGA-GATTAAACCATGAGTCAAAAATAAAAATGACTGGATTAAACCATGAG-TCAAAAAT
12924567 AAAA
64 AAAA
* * * * *
12924571 ATGACCGAAATTAAACCATGGGTCAGAAAATAAAAAAGACCTGGATTAAACCATAAGTCAAAAAT
1 ATAACCGAGATTAAACCATGAGTCA-AAAATAAAAATGA-CTGGATTAAACCATGAGTCAAAAAT
12924636 -AAA
64 AAAA
* * *
12924639 ATGA-CTAGGATTAAACCAT-AGGTCAAAAATAAAAATGACTAGGATTAAAGCATGAGTCAGAAA
1 ATAACCGA-GATTAAACCATGA-GTCAAAAATAAAAATGACT-GGATTAAACCATGAGTCA-AAA
12924702 ATAAAA
62 ATAAAA
* * * * * * * *
12924708 ATGATCGGGATTAAACCATGAGACAAAAAT--AAAT-ACTAAGATTGAACCATGGGTCAGAGAAT
1 ATAACCGAGATTAAACCATGAGTCAAAAATAAAAATGACT-GGATTAAACCATGAGTCA-AAAAT
**
12924770 AACG
64 AAAA
** * ** *
12924774 ACGATCGAGATTAAACCATGAGTCAAAAATAAAAATGATCAAGATTGAACCATGAGTCAAAGAAT
1 ATAACCGAGATTAAACCATGAGTCAAAAATAAAAATGA-CTGGATTAAACCATGAGTCAAA-AAT
**
12924839 AATG
64 AAAA
** * ** *
12924843 ACGACCGAAATTAAACCATGAGTTGAAAATAAAAATGACTGGGATTAAACTATG-GTCAAAAATA
1 ATAACCGAGATTAAACCATGAGTCAAAAATAAAAATGACT-GGATTAAACCATGAGTCAAAAATA
12924907 AAA
65 AAA
*** * * * * ** * ***
12924910 GCGACCAAGATTAAATCATGGGTCAGAGAATAATGACGA-TAGAGATTAAACCATGAGTTGGAAA
1 ATAACCGAGATTAAACCATGAGTCA-AAAATAAAAATGACT-G-GATTAAACCATGAGTCAAAAA
12924974 TAAAA
63 TAAAA
* * * * ** *
12924979 ATGACCG-GGTTAAACCATGGGTCAAAAATAAAAACGGGTGGGATTAAACCATGGGTCAAAGAAT
1 ATAACCGAGATTAAACCATGAGTCAAAAATAAAAATGACT-GGATTAAACCATGAGTCAAA-AAT
**
12925043 AATG
64 AAAA
* * * * *
12925047 ACAATC-AGGATTAAACTATGAGTCAAAAATAAAAATAACCTGGATTAAACCATGAGTC-GAAAT
1 ATAACCGA-GATTAAACCATGAGTCAAAAATAAAAATGA-CTGGATTAAACCATGAGTCAAAAAT
12925110 -AAA
64 AAAA
** * * *
12925113 ACGACC-AGGATTAAACCATGGGTTAGAAATAAAAA
1 ATAACCGA-GATTAAACCATGAGTCAAAAATAAAAA
12925148 CAACCGGGAT
Statistics
Matches: 881, Mismatches: 171, Indels: 123
0.75 0.15 0.10
Matches are distributed among these distances:
61 4 0.00
62 89 0.10
63 7 0.01
65 4 0.00
66 89 0.10
67 119 0.14
68 182 0.21
69 350 0.40
70 37 0.04
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (67 bp):
ATAACCGAGATTAAACCATGAGTCAAAAATAAAAATGACTGGATTAAACCATGAGTCAAAAATAA
AA
Found at i:12924386 original size:28 final size:28
Alignment explanation
Indices: 12924341--12924404 Score: 87
Period size: 28 Copynumber: 2.3 Consensus size: 28
12924331 AGTCGAAAAT
*
12924341 AAAAATAACCCGGGTTAAACCAT-GAGTC
1 AAAAATAACCCGGATTAAACCATAGA-TC
12924369 AAAAATAA-CCGAGATTAAACCATAGATC
1 AAAAATAACCCG-GATTAAACCATAGATC
12924397 AAAAATAA
1 AAAAATAA
12924405 AAATGATCGA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
27 3 0.09
28 28 0.85
29 2 0.06
ACGTcount: A:0.53, C:0.17, G:0.12, T:0.17
Consensus pattern (28 bp):
AAAAATAACCCGGATTAAACCATAGATC
Found at i:12924422 original size:164 final size:164
Alignment explanation
Indices: 12924214--12924705 Score: 629
Period size: 164 Copynumber: 3.0 Consensus size: 164
12924204 TAAAAACGAT
* ** * *
12924214 CGAGATT-AACC-TATGAGTCAAAAATAAAAATAATCGGGATTAAACCATGAGTTA-AAAATAAA
1 CGAGATTAAACCATA-GA-TCAAAAATAAAAATGATCGAAATTAAACCATGGGTCAGAAAATAAA
* * * * * * * *
12924276 ACTTA-TTGAAATTAAACCATGAGTTAGAAATAAAAATGA-TCGAGATTAAATCAT-GAGTCGAA
64 AATGACCTG-AATTAAACCATAAGTCAAAAAT-AAAATGACT-GAGATTAAACCATAG-GTCAAA
* *
12924338 AATAAAAATAACCCGGGTTAAACCATGAGTCAAAAATAAC
125 AATAAAAATAACCAGGATTAAACCATGAGTCAAAAATAAC
12924378 CGAGATTAAACCATAGATCAAAAATAAAAATGATCGAAATTAAACCATGGGTCAGAAAATAAAAA
1 CGAGATTAAACCATAGATCAAAAATAAAAATGATCGAAATTAAACCATGGGTCAGAAAATAAAAA
* *
12924443 TGACCTGGATTAAACCATAAGTCAAAAATAAAATGACTGGGATTAAACCATAGGTCAAAAATAAA
66 TGACCTGAATTAAACCATAAGTCAAAAATAAAATGACTGAGATTAAACCATAGGTCAAAAATAAA
* * *
12924508 AATGACTAGGATTAAAGCATGAGTCAAAAATAAC
131 AATAACCAGGATTAAACCATGAGTCAAAAATAAC
*
12924542 CGAGATTAAACCATAGATCAAAAATAAAAATGACCGAAATTAAACCATGGGTCAGAAAATAAAAA
1 CGAGATTAAACCATAGATCAAAAATAAAAATGATCGAAATTAAACCATGGGTCAGAAAATAAAAA
* *
12924607 AGACCTGGATTAAACCATAAGTCAAAAATAAAATGACT-AGGATTAAACCATAGGTCAAAAATAA
66 TGACCTGAATTAAACCATAAGTCAAAAATAAAATGACTGA-GATTAAACCATAGGTCAAAAATAA
* * *
12924671 AAATGACTAGGATTAAAGCATGAGTCAGAAAATAA
130 AAATAACCAGGATTAAACCATGAGTCA-AAAATAA
12924706 AAATGATCGG
Statistics
Matches: 297, Mismatches: 23, Indels: 15
0.89 0.07 0.04
Matches are distributed among these distances:
164 249 0.84
165 44 0.15
166 4 0.01
ACGTcount: A:0.52, C:0.13, G:0.15, T:0.21
Consensus pattern (164 bp):
CGAGATTAAACCATAGATCAAAAATAAAAATGATCGAAATTAAACCATGGGTCAGAAAATAAAAA
TGACCTGAATTAAACCATAAGTCAAAAATAAAATGACTGAGATTAAACCATAGGTCAAAAATAAA
AATAACCAGGATTAAACCATGAGTCAAAAATAAC
Found at i:12924977 original size:237 final size:237
Alignment explanation
Indices: 12924186--12924966 Score: 573
Period size: 237 Copynumber: 3.3 Consensus size: 237
12924176 AACTGAAATA
* * * * ** *
12924186 AAACCATGGGTCAAAAAATAAAAACGATCGAGATT-AACCTATGAGTCA-AAAATAAAAATAATC
1 AAACCATAGGTC-AAAAATAAAAACGACCAAGATTAAAGC-ATGAGTCAGAAAATAAAAACGATA
* ** * * * * **
12924249 GGGATTAAACCATGAGTTAAAAATAAA-ACTTATTGAAATTAAACCATGAGTTAGA-AATAAAAA
64 GAGATTAAACCATGAGACAAAAATAAATAC-TA---AGATTGAACCATGGGTCAGAGAATAACGA
* * * * **
12924312 TGATCGAGATTAAATCAT-GAGTCGAAAATAAAAATAACCCG-GGTTAAACCATGAGTCA-AAAA
125 CGATCGAGATTAAACCATAGA-TCAAAAATAAAAATGA-CCGAAATTAAACCATGAGTCAGAAAA
* *
12924374 T-----A-ACC-GAGATTAAACCAT-AGATCAAAAATAAAAATGA-TCGAAATT
188 TAAAAAAGACCTGA-ATTAAACCATAAG-TCAAAAAT-AAAATGACTAG-GATT
* * ** * * *
12924419 AAACCATGGGTCAGAAAATAAAAATGACCTGGATTAAACCATAAGTCA-AAAAT-AAAATGACT-
1 AAACCATAGGTCA-AAAATAAAAACGACCAAGATTAAAGCATGAGTCAGAAAATAAAAACGA-TA
* * * * * * *
12924481 GGGATTAAACCAT-AGGTCAAAAATAAAAATGACTAGGATTAAAGCATGAGTCA-AAAAT-A--A
64 GAGATTAAACCATGA-GACAAAAAT--AAAT-ACTAAGATTGAACCATGGGTCAGAGAATAACGA
*
12924541 C---CGAGATTAAACCATAGATCAAAAATAAAAATGACCGAAATTAAACCATGGGTCAGAAAATA
125 CGATCGAGATTAAACCATAGATCAAAAATAAAAATGACCGAAATTAAACCATGAGTCAGAAAATA
*
12924603 AAAAAGACCTGGATTAAACCATAAGTCAAAAATAAAATGACTAGGATT
190 AAAAAGACCTGAATTAAACCATAAGTCAAAAATAAAATGACTAGGATT
* * * * * *
12924651 AAACCATAGGTCAAAAATAAAAATGACTAGGATTAAAGCATGAGTCAGAAAATAAAAATGATCGG
1 AAACCATAGGTCAAAAATAAAAACGACCAAGATTAAAGCATGAGTCAGAAAATAAAAACGATAGA
12924716 GATTAAACCATGAGACAAAAATAAATACTAAGATTGAACCATGGGTCAGAGAATAACGACGATCG
66 GATTAAACCATGAGACAAAAATAAATACTAAGATTGAACCATGGGTCAGAGAATAACGACGATCG
* * **
12924781 AGATTAAACCAT-GAGTCAAAAATAAAAATGATC-AAGATTGAACCATGAGTCA-AAGAATAATG
131 AGATTAAACCATAGA-TCAAAAATAAAAATGACCGAA-ATTAAACCATGAGTCAGAA-AATAAAA
* * ** *
12924843 ACGACC-GAAATTAAACCATGAGTTGAAAATAAAAATGACTGGGATT
193 AAGACCTG-AATTAAACCATAAGTCAAAAAT-AAAATGACTAGGATT
* * * * * **
12924889 AAACTAT-GGTCAAAAATAAAAGCGACCAAGATTAAATCATGGGTCAGAGAATAATGACGATAGA
1 AAACCATAGGTCAAAAATAAAAACGACCAAGATTAAAGCATGAGTCAGAAAATAAAAACGATAGA
12924953 GATTAAACCATGAG
66 GATTAAACCATGAG
12924967 TTGGAAATAA
Statistics
Matches: 455, Mismatches: 56, Indels: 70
0.78 0.10 0.12
Matches are distributed among these distances:
225 3 0.01
226 41 0.09
227 7 0.02
229 1 0.00
230 18 0.04
231 41 0.09
232 75 0.16
233 93 0.20
234 13 0.03
235 2 0.00
236 9 0.02
237 132 0.29
238 20 0.04
ACGTcount: A:0.50, C:0.13, G:0.17, T:0.20
Consensus pattern (237 bp):
AAACCATAGGTCAAAAATAAAAACGACCAAGATTAAAGCATGAGTCAGAAAATAAAAACGATAGA
GATTAAACCATGAGACAAAAATAAATACTAAGATTGAACCATGGGTCAGAGAATAACGACGATCG
AGATTAAACCATAGATCAAAAATAAAAATGACCGAAATTAAACCATGAGTCAGAAAATAAAAAAG
ACCTGAATTAAACCATAAGTCAAAAATAAAATGACTAGGATT
Found at i:12925515 original size:18 final size:18
Alignment explanation
Indices: 12925494--12925537 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
12925484 TAAATGATAC
* *
12925494 GAATGCAAATGTCGATGG
1 GAATGCAAATATCAATGG
*
12925512 GAATGCAAATATCAATGT
1 GAATGCAAATATCAATGG
12925530 GAATGCAA
1 GAATGCAA
12925538 GAATGTAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.41, C:0.11, G:0.25, T:0.23
Consensus pattern (18 bp):
GAATGCAAATATCAATGG
Found at i:12925726 original size:41 final size:41
Alignment explanation
Indices: 12925650--12925753 Score: 113
Period size: 41 Copynumber: 2.5 Consensus size: 41
12925640 AATGCCATGG
* * * **
12925650 TGCAAATGCAAATTTCTCTCTTATGGCATAAATGCAAGTGA
1 TGCAAATACAAATGTCTCTTTTATGGCATAAATGCAAGCAA
12925691 TGCAAATACAAATGTCTCTTTTAT-G-ATACAGATGCAAGCAA
1 TGCAAATACAAATGTCTCTTTTATGGCATA-A-ATGCAAGCAA
* *
12925732 TGTAAATACAAATGTCTTTTTT
1 TGCAAATACAAATGTCTCTTTT
12925754 TGTGATGTAA
Statistics
Matches: 54, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
39 3 0.06
40 2 0.04
41 49 0.91
ACGTcount: A:0.36, C:0.15, G:0.14, T:0.35
Consensus pattern (41 bp):
TGCAAATACAAATGTCTCTTTTATGGCATAAATGCAAGCAA
Found at i:12925999 original size:65 final size:64
Alignment explanation
Indices: 12925841--12926037 Score: 234
Period size: 65 Copynumber: 3.0 Consensus size: 64
12925831 AGGGGTAGCA
* ** * *
12925841 AATATGGGCTTAAATCTTTCTTTGAAGGCCAACTAATCTAAGCTTA-ATTTTCATTAGAGGCCAA
1 AATATGGGCTTAAAT-TTTCTTTGAAGGCCAACTAAACTCGGTTTACA--TTCATTAGAGGCCAG
12925905 CT
63 CT
* * * * *
12925907 AATCTGGGCTTAAATTTTCTTTGAAGGCCAGCTAAACTGGGTTTACATTCATTGGGGGCCAGCT
1 AATATGGGCTTAAATTTTCTTTGAAGGCCAACTAAACTCGGTTTACATTCATTAGAGGCCAGCT
* * *
12925971 AATATGGGCTTCATATTTTTTTTTAAGGCCAACTAAACTCGGTTTACATTCATTAGAGGCCAGCT
1 AATATGGGCTT-AAATTTTCTTTGAAGGCCAACTAAACTCGGTTTACATTCATTAGAGGCCAGCT
12926036 AA
1 AA
12926038 CCTAAGCCTA
Statistics
Matches: 112, Mismatches: 17, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
64 24 0.21
65 73 0.65
66 15 0.13
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.35
Consensus pattern (64 bp):
AATATGGGCTTAAATTTTCTTTGAAGGCCAACTAAACTCGGTTTACATTCATTAGAGGCCAGCT
Found at i:12926310 original size:21 final size:19
Alignment explanation
Indices: 12926286--12926331 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 19
12926276 TTGTCAAATA
12926286 TTTTTTCATCTCTTTCCTTT
1 TTTTTTCAT-TCTTTCCTTT
* *
12926306 TTTTTTCTATTTTTTTCTTT
1 TTTTTTC-ATTCTTTCCTTT
12926326 TTTTTT
1 TTTTTT
12926332 TCAACAATAG
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
20 21 0.91
21 2 0.09
ACGTcount: A:0.04, C:0.15, G:0.00, T:0.80
Consensus pattern (19 bp):
TTTTTTCATTCTTTCCTTT
Found at i:12926311 original size:20 final size:20
Alignment explanation
Indices: 12926286--12926334 Score: 62
Period size: 21 Copynumber: 2.4 Consensus size: 20
12926276 TTGTCAAATA
12926286 TTTTTTCATCTCTTTCCTTT
1 TTTTTTCATCTCTTTCCTTT
* * *
12926306 TTTTTTCTATTTTTTTCTTTT
1 TTTTTTC-ATCTCTTTCCTTT
12926327 TTTTTTCA
1 TTTTTTCA
12926335 ACAATAGATT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.06, C:0.16, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTTTCATCTCTTTCCTTT
Found at i:12926331 original size:10 final size:10
Alignment explanation
Indices: 12926302--12926331 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
12926292 CATCTCTTTC
12926302 CTTTTTTTTT
1 CTTTTTTTTT
*
12926312 CTATTTTTTT
1 CTTTTTTTTT
12926322 CTTTTTTTTT
1 CTTTTTTTTT
12926332 TCAACAATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (10 bp):
CTTTTTTTTT
Found at i:12926594 original size:26 final size:26
Alignment explanation
Indices: 12926546--12926599 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
12926536 ACAAATACTT
** *
12926546 TTTCTTAGGATGCAAATGCAAATTTC
1 TTTCTTAGGATGCAAATAAAAATGTC
12926572 TTTCTTATGG-TGCAAATAAAAATGTC
1 TTTCTTA-GGATGCAAATAAAAATGTC
12926598 TT
1 TT
12926600 ATACAAGTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.31, C:0.13, G:0.15, T:0.41
Consensus pattern (26 bp):
TTTCTTAGGATGCAAATAAAAATGTC
Found at i:12926668 original size:41 final size:41
Alignment explanation
Indices: 12926612--12926760 Score: 176
Period size: 41 Copynumber: 3.6 Consensus size: 41
12926602 ACAAGTGTAA
*
12926612 ATGCAAGTGATGCAAATGCAAATGTCTCTT-TTGTGATGCAG
1 ATGCAAGCGATGCAAATGCAAATGTCT-TTCTTGTGATGCAG
12926653 ATAG-AAGCGATGCAAATGCAAAATGTCTTTCTTGTGATGCAG
1 AT-GCAAGCGATGCAAATGC-AAATGTCTTTCTTGTGATGCAG
* * * ** * *
12926695 ATGCAAGCGATGTAAATGCAAATATTTTTCTCATGATACAA
1 ATGCAAGCGATGCAAATGCAAATGTCTTTCTTGTGATGCAG
*
12926736 ATGCAAGCGATGCAAATGCCAATGT
1 ATGCAAGCGATGCAAATGCAAATGT
12926761 TTTTTTCATG
Statistics
Matches: 93, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
41 57 0.61
42 36 0.39
ACGTcount: A:0.34, C:0.15, G:0.21, T:0.29
Consensus pattern (41 bp):
ATGCAAGCGATGCAAATGCAAATGTCTTTCTTGTGATGCAG
Found at i:12926764 original size:41 final size:41
Alignment explanation
Indices: 12926610--12926775 Score: 167
Period size: 41 Copynumber: 4.0 Consensus size: 41
12926600 ATACAAGTGT
* *
12926610 AAATGCAAGTGATGCAAATGCAAATGTCTCTTT-T-GTGATGC
1 AAATGCAAGCGATGCAAATGCAAATGT-T-TTTCTCATGATGC
* * **
12926651 AGATAG-AAGCGATGCAAATGCAAAATGTCTTTCTTGTGATGC
1 AAAT-GCAAGCGATGCAAATGC-AAATGTTTTTCTCATGATGC
* * * *
12926693 AGATGCAAGCGATGTAAATGCAAATATTTTTCTCATGATAC
1 AAATGCAAGCGATGCAAATGCAAATGTTTTTCTCATGATGC
* *
12926734 AAATGCAAGCGATGCAAATGCCAATGTTTTTTTCATGATGC
1 AAATGCAAGCGATGCAAATGCAAATGTTTTTCTCATGATGC
12926775 A
1 A
12926776 CACATAAGTG
Statistics
Matches: 105, Mismatches: 15, Indels: 10
0.81 0.12 0.08
Matches are distributed among these distances:
40 3 0.03
41 70 0.67
42 32 0.30
ACGTcount: A:0.34, C:0.15, G:0.20, T:0.31
Consensus pattern (41 bp):
AAATGCAAGCGATGCAAATGCAAATGTTTTTCTCATGATGC
Found at i:12927879 original size:15 final size:15
Alignment explanation
Indices: 12927855--12927888 Score: 52
Period size: 15 Copynumber: 2.3 Consensus size: 15
12927845 TTCTTTCCTC
*
12927855 TTTT-TTTGTTTTTT
1 TTTTGTTTGTTTTCT
12927869 TTTTGTTTGTTTTCT
1 TTTTGTTTGTTTTCT
12927884 TTTTG
1 TTTTG
12927889 ACTAACACAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.00, C:0.03, G:0.12, T:0.85
Consensus pattern (15 bp):
TTTTGTTTGTTTTCT
Found at i:12928246 original size:10 final size:10
Alignment explanation
Indices: 12928233--12928314 Score: 51
Period size: 11 Copynumber: 7.6 Consensus size: 10
12928223 TCATTTCATT
12928233 TTTTTTCTTC
1 TTTTTTCTTC
12928243 TTTTATTCTTCC
1 TTTT-TTCTT-C
12928255 TTTCCTTTCCTTTC
1 TTT--TTT-C-TTC
* *
12928269 ATTTTTCTTT
1 TTTTTTCTTC
*
12928279 TTCTTTTTTTC
1 TT-TTTTCTTC
12928290 TCTTTTTC-TC
1 T-TTTTTCTTC
12928300 TTTTTT-TTC
1 TTTTTTCTTC
12928309 TTTTTT
1 TTTTTT
12928315 TCTTTCACGG
Statistics
Matches: 57, Mismatches: 6, Indels: 19
0.70 0.07 0.23
Matches are distributed among these distances:
9 13 0.23
10 10 0.18
11 17 0.30
12 8 0.14
13 2 0.04
14 5 0.09
15 2 0.04
ACGTcount: A:0.02, C:0.21, G:0.00, T:0.77
Consensus pattern (10 bp):
TTTTTTCTTC
Found at i:12928281 original size:6 final size:6
Alignment explanation
Indices: 12928265--12928313 Score: 50
Period size: 6 Copynumber: 8.5 Consensus size: 6
12928255 TTTCCTTTCC
* *
12928265 TTTCATT TTTCTT TTTC-T TTT-TT TCTCTT TTTCTC TTT-TT TTTCTT
1 TTTC-TT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
12928311 TTT
1 TTT
12928314 TTCTTTCACG
Statistics
Matches: 35, Mismatches: 4, Indels: 7
0.76 0.09 0.15
Matches are distributed among these distances:
5 11 0.31
6 20 0.57
7 4 0.11
ACGTcount: A:0.02, C:0.16, G:0.00, T:0.82
Consensus pattern (6 bp):
TTTCTT
Found at i:12928289 original size:8 final size:8
Alignment explanation
Indices: 12928276--12928319 Score: 61
Period size: 8 Copynumber: 5.1 Consensus size: 8
12928266 TTCATTTTTC
12928276 TTTTTCTT
1 TTTTTCTT
12928284 TTTTTCTCT
1 TTTTTCT-T
12928293 TTTTCTCTTT
1 TTTT-TC-TT
12928303 TTTTTCTT
1 TTTTTCTT
12928311 TTTTTCTT
1 TTTTTCTT
12928319 T
1 T
12928320 CACGGAGTGG
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
8 18 0.55
9 7 0.21
10 7 0.21
11 1 0.03
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTCTT
Found at i:12928293 original size:16 final size:16
Alignment explanation
Indices: 12928270--12928319 Score: 66
Period size: 16 Copynumber: 3.1 Consensus size: 16
12928260 TTTCCTTTCA
12928270 TTTTTCTTTTTCT-TT
1 TTTTTCTTTTTCTCTT
12928285 TTTTCTCTTTTTCTCTTT
1 TTTT-TCTTTTTCTC-TT
*
12928303 TTTTTCTTTTTTTCTT
1 TTTTTCTTTTTCTCTT
12928319 T
1 T
12928320 CACGGAGTGG
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
15 4 0.13
16 12 0.39
17 9 0.29
18 6 0.19
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (16 bp):
TTTTTCTTTTTCTCTT
Found at i:12928318 original size:17 final size:18
Alignment explanation
Indices: 12928276--12928319 Score: 72
Period size: 17 Copynumber: 2.5 Consensus size: 18
12928266 TTCATTTTTC
12928276 TTTTTCTTTTTTTCTCTT
1 TTTTTCTTTTTTTCTCTT
*
12928294 TTTCTCTTTTTTT-TCTT
1 TTTTTCTTTTTTTCTCTT
12928311 TTTTTCTTT
1 TTTTTCTTT
12928320 CACGGAGTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
17 12 0.50
18 12 0.50
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTTCTTTTTTTCTCTT
Found at i:12933448 original size:151 final size:151
Alignment explanation
Indices: 12933239--12933618 Score: 413
Period size: 151 Copynumber: 2.5 Consensus size: 151
12933229 GCATGTACAA
* * *
12933239 CCAAGCAAAACAAACATGAAGATGGG-ACGACCTAGTTCACATGAAGCATGCACTACCTATGACC
1 CCAAGCAAAACAAAAATAAAGA-GGGAAC-AACTAGTTCACATGAAGCATGCACTACCTATGACC
* ** *
12933303 TATTTTCAGCTTTCATTCCTTATGT-CTTCCTACATCCAAAATTTATTGTTCATGTAGTGGTTAA
64 TATTTTCAGCTTTCATTCCTTATGTCCTT-CTACAACCAAAATTTATTGTTCATACACTGGTTAA
* *
12933367 GTAAGCAAAGTCATACAAAGAAAG
128 GCAAACAAAGTCATACAAAGAAAG
* * * * * * *
12933391 TCAAGCCAAACAAAAATAAAGAGGGAACAACTAGTTCACGTGAGGCATGGATTACCTATGGCCTA
1 CCAAGCAAAACAAAAATAAAGAGGGAACAACTAGTTCACATGAAGCATGCACTACCTATGACCTA
* * * * * *
12933456 TTTTCAGCTTTCATTCTTTTTGTCCTTTTACAACCAGAATTTATTGTTTATACACTGGTTGAGCA
66 TTTTCAGCTTTCATTCCTTATGTCCTTCTACAACCAAAATTTATTGTTCATACACTGGTTAAGCA
*
12933521 AACAAAGTGATACAAAGAAAG
131 AACAAAGTCATACAAAGAAAG
* * * * * * * ** *
12933542 CCATGCAAAATAAGAATAAAGAGGGAACAACTAATTCATATGAAGCTTGCTCTATATATGGCCTA
1 CCAAGCAAAACAAAAATAAAGAGGGAACAACTAGTTCACATGAAGCATGCACTACCTATGACCTA
*
12933607 TTTTCAACTTTC
66 TTTTCAGCTTTC
12933619 TATTTTCTAT
Statistics
Matches: 187, Mismatches: 39, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
151 164 0.88
152 23 0.12
ACGTcount: A:0.36, C:0.19, G:0.16, T:0.29
Consensus pattern (151 bp):
CCAAGCAAAACAAAAATAAAGAGGGAACAACTAGTTCACATGAAGCATGCACTACCTATGACCTA
TTTTCAGCTTTCATTCCTTATGTCCTTCTACAACCAAAATTTATTGTTCATACACTGGTTAAGCA
AACAAAGTCATACAAAGAAAG
Found at i:12934310 original size:19 final size:21
Alignment explanation
Indices: 12934277--12934326 Score: 59
Period size: 19 Copynumber: 2.4 Consensus size: 21
12934267 ACCTTTTGAA
12934277 TTTTTTTTTCAGCTCT-TC-C
1 TTTTTTTTTCAGCTCTCTCTC
**
12934296 TTTTTTTTTGTGCTCTCTCTTC
1 TTTTTTTTTCAGCTCTCTC-TC
12934318 TTTTTTTTT
1 TTTTTTTTT
12934327 TTTAGAGGCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
19 14 0.54
20 2 0.08
22 10 0.38
ACGTcount: A:0.02, C:0.20, G:0.06, T:0.72
Consensus pattern (21 bp):
TTTTTTTTTCAGCTCTCTCTC
Found at i:12934951 original size:145 final size:144
Alignment explanation
Indices: 12934813--12935079 Score: 381
Period size: 145 Copynumber: 1.8 Consensus size: 144
12934803 GTACTGTTAT
* * * * *
12934813 GATTTCAGATGGACCAAAAATCATGAAATATTATGAAATTATGATCTAAAAAGTTTCATGAAAAT
1 GATTTCAAATGCACCAAAAATCATGAAATATTATAAAATTAAGATCTAAAAAGTTTCATAAAAAT
**
12934878 CCAAGCTCGGGAAAGCCAACTTATGAAAATACCCTTATAAGGGTATTTTCATAATTTTTTCCTTC
66 CCAAGCTC-GGAAAGCCAACTTACAAAAATACCCTTATAAGGGTATTTTCATAATTTTTTCCTTC
12934943 CCAGGGTACCATTAC
130 CCAGGGTACCATTAC
* * * *
12934958 GATTTTAAATGCACCAAAAATCATGAAATATTATAAAATTAAGATTTGAAATGTTTCATAAAAAT
1 GATTTCAAATGCACCAAAAATCATGAAATATTATAAAATTAAGATCTAAAAAGTTTCATAAAAAT
* * * **
12935023 CCAAGCTCGGAAGGTCAATTTACAAAAATACCCTTATAAGGGTATTTTGGTAATTTT
66 CCAAGCTCGGAAAGCCAACTTACAAAAATACCCTTATAAGGGTATTTTCATAATTTT
12935080 GACTTTTTTG
Statistics
Matches: 106, Mismatches: 16, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
144 42 0.40
145 64 0.60
ACGTcount: A:0.39, C:0.15, G:0.14, T:0.32
Consensus pattern (144 bp):
GATTTCAAATGCACCAAAAATCATGAAATATTATAAAATTAAGATCTAAAAAGTTTCATAAAAAT
CCAAGCTCGGAAAGCCAACTTACAAAAATACCCTTATAAGGGTATTTTCATAATTTTTTCCTTCC
CAGGGTACCATTAC
Found at i:12935315 original size:13 final size:13
Alignment explanation
Indices: 12935297--12935321 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
12935287 TTATAGATTG
12935297 TAAATGGTCTTAC
1 TAAATGGTCTTAC
12935310 TAAATGGTCTTA
1 TAAATGGTCTTA
12935322 GCACATGTTC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.12, G:0.16, T:0.40
Consensus pattern (13 bp):
TAAATGGTCTTAC
Found at i:12936917 original size:3 final size:3
Alignment explanation
Indices: 12936909--12936941 Score: 57
Period size: 3 Copynumber: 11.0 Consensus size: 3
12936899 ATTTTTCTTA
*
12936909 AAT AAT AAT AAT AGT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
12936942 TTTTTGTGAC
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:12938354 original size:337 final size:337
Alignment explanation
Indices: 12937739--12938382 Score: 1252
Period size: 337 Copynumber: 1.9 Consensus size: 337
12937729 CTTCTTGGTC
12937739 TCCACGTTTAGCTTCAAAAGTAGAAGTAAAGTTACCTAACCATGCACGTAACCTCTTTTGAGGTT
1 TCCACGTTTAGCTTCAAAAGTAGAAGTAAAGTTACCTAACCATGCACGTAACCTCTTTTGAGGTT
*
12937804 GCGCATTAGTATTAATTATCACAATGATGAGTGCTTGTTTAATATCTGAATAAAAAATTACTATT
66 GCGCATCAGTATTAATTATCACAATGATGAGTGCTTGTTTAATATCTGAATAAAAAATTACTATT
12937869 ATTTTTATGAAAAGAAACTTTTTAAAAATCAATAATCATCAAGGTTCTTAAACTCGACTGTGATC
131 ATTTTTATGAAAAGAAACTTTTTAAAAATCAATAATCATCAAGGTTCTTAAACTCGACTGTGATC
*
12937934 AACCTCACACTTAACCTTGGTTAACTCATGTGCTAATATATTGGCTTTTCTCCTTGCAAAAGCGA
196 AACCTCACACTTAACCTTGGTTAACTCATGTGCTAATATATTGGCTTTTCTCCTTGCAAAAGCAA
12937999 AATGTAATCTGCTACAAGAAGAAGGAAGATTCAAAATATCAATGATCTACACAATTGCTTCTTGG
261 AATGTAATCTGCTACAAGAAGAAGGAAGATTCAAAATATCAATGATCTACACAATTGCTTCTTGG
12938064 TCTCTGTGCTAT
326 TCTCTGTGCTAT
*
12938076 TCCACGTTTGGCTTCAAAAGTAGAAGTAAAGTTACCTAACCATGCACGTAACCTCTTTTGAGGTT
1 TCCACGTTTAGCTTCAAAAGTAGAAGTAAAGTTACCTAACCATGCACGTAACCTCTTTTGAGGTT
*
12938141 GCGCATCAGTATTAATTATCACAGTGATGAGTGCTTGTTTAATATCTGAATAAAAAATTACTATT
66 GCGCATCAGTATTAATTATCACAATGATGAGTGCTTGTTTAATATCTGAATAAAAAATTACTATT
12938206 ATTTTTATGAAAAGAAACTTTTTAAAAATCAATAATCATCAAGGTTCTTAAACTCGACTGTGATC
131 ATTTTTATGAAAAGAAACTTTTTAAAAATCAATAATCATCAAGGTTCTTAAACTCGACTGTGATC
12938271 AACCTCACACTTAACCTTGGTTAACTCATGTGCTAATATATTGGCTTTTCTCCTTGCAAAAGCAA
196 AACCTCACACTTAACCTTGGTTAACTCATGTGCTAATATATTGGCTTTTCTCCTTGCAAAAGCAA
12938336 AATGTAATCTGCTACAAGAAGAAGGAAGATTCAAAATATCAATGATC
261 AATGTAATCTGCTACAAGAAGAAGGAAGATTCAAAATATCAATGATC
12938383 ATACCTCCCT
Statistics
Matches: 303, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
337 303 1.00
ACGTcount: A:0.35, C:0.17, G:0.15, T:0.33
Consensus pattern (337 bp):
TCCACGTTTAGCTTCAAAAGTAGAAGTAAAGTTACCTAACCATGCACGTAACCTCTTTTGAGGTT
GCGCATCAGTATTAATTATCACAATGATGAGTGCTTGTTTAATATCTGAATAAAAAATTACTATT
ATTTTTATGAAAAGAAACTTTTTAAAAATCAATAATCATCAAGGTTCTTAAACTCGACTGTGATC
AACCTCACACTTAACCTTGGTTAACTCATGTGCTAATATATTGGCTTTTCTCCTTGCAAAAGCAA
AATGTAATCTGCTACAAGAAGAAGGAAGATTCAAAATATCAATGATCTACACAATTGCTTCTTGG
TCTCTGTGCTAT
Found at i:12939691 original size:13 final size:14
Alignment explanation
Indices: 12939667--12939695 Score: 51
Period size: 13 Copynumber: 2.1 Consensus size: 14
12939657 AAAAAATAAA
12939667 AATTTATAAAATAT
1 AATTTATAAAATAT
12939681 AATTT-TAAAATAT
1 AATTTATAAAATAT
12939694 AA
1 AA
12939696 AAAAGTAAGA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 10 0.67
14 5 0.33
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
AATTTATAAAATAT
Found at i:12939824 original size:2 final size:2
Alignment explanation
Indices: 12939817--12939855 Score: 60
Period size: 2 Copynumber: 19.5 Consensus size: 2
12939807 TTCTATAACC
* *
12939817 TA TA TA TA TA TA TA TA TA TA TA TA GA TA TA GA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
12939856 CCATATCCAT
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
2 33 1.00
ACGTcount: A:0.49, C:0.00, G:0.05, T:0.46
Consensus pattern (2 bp):
TA
Found at i:12940899 original size:2 final size:2
Alignment explanation
Indices: 12940892--12940927 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
12940882 AATTCTTAGA
12940892 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
12940928 GCTTATACTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:12941607 original size:2 final size:2
Alignment explanation
Indices: 12941594--12941624 Score: 53
Period size: 2 Copynumber: 15.0 Consensus size: 2
12941584 TTATTATTAG
12941594 TA TA TCA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA T-A TA TA TA TA TA TA TA TA TA TA TA TA
12941625 CACACACACA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
2 26 0.93
3 2 0.07
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:12944295 original size:8 final size:9
Alignment explanation
Indices: 12944274--12944316 Score: 50
Period size: 9 Copynumber: 4.6 Consensus size: 9
12944264 TGTCAACTTG
*
12944274 TTTTTGAAA
1 TTTTTAAAA
12944283 TTTTTAAAA
1 TTTTTAAAA
12944292 TTTTTAAAA
1 TTTTTAAAA
*
12944301 TTCTTTTAGAA
1 -T-TTTTAAAA
12944312 TTTTT
1 TTTTT
12944317 TTTAATTTAA
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
9 21 0.70
10 2 0.07
11 7 0.23
ACGTcount: A:0.33, C:0.02, G:0.05, T:0.60
Consensus pattern (9 bp):
TTTTTAAAA
Done.