Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 66 of 195
Found at i:12954558 original size:25 final size:25
Alignment explanation
Indices: 12954479--12954558 Score: 106
Period size: 25 Copynumber: 3.2 Consensus size: 25
12954469 CAGCAATGTG
* *
12954479 CTCAAACACACCCTTTAGCAAACCA
1 CTCAAAAACACCATTTAGCAAACCA
* * *
12954504 CTAAAAAACATCATTCAGCAAACCA
1 CTCAAAAACACCATTTAGCAAACCA
*
12954529 TTCAAAAACACCATTTAGCAAACCA
1 CTCAAAAACACCATTTAGCAAACCA
12954554 CTCAA
1 CTCAA
12954559 CATATGATTT
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.46, C:0.33, G:0.04, T:0.17
Consensus pattern (25 bp):
CTCAAAAACACCATTTAGCAAACCA
Found at i:12955216 original size:62 final size:62
Alignment explanation
Indices: 12955081--12955217 Score: 179
Period size: 62 Copynumber: 2.2 Consensus size: 62
12955071 TTTTCAATAG
*
12955081 AAAACCGCCTTCAATAATTATGTACAAAAATTAAAAGAAATTAGTGAAGGCATTTGTTTTTAA
1 AAAACC-CCTTCAATAATTATGTACAAAAATTAAAAGAAATTAGTGAAGGCATTTGTTTCTAA
** * * *
12955144 AAAATGCCTTCAATAATTATGTACATAAATTAGAAGGAATTAGTGAAGGCA-TT-TTTCTAGA
1 AAAACCCCTTCAATAATTATGTACAAAAATTAAAAGAAATTAGTGAAGGCATTTGTTTCTA-A
12955205 ATAAACCCCTTCA
1 A-AAACCCCTTCA
12955218 CTAACCATCT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
60 5 0.08
61 4 0.06
62 51 0.80
63 4 0.06
ACGTcount: A:0.42, C:0.13, G:0.13, T:0.31
Consensus pattern (62 bp):
AAAACCCCTTCAATAATTATGTACAAAAATTAAAAGAAATTAGTGAAGGCATTTGTTTCTAA
Found at i:12955358 original size:186 final size:186
Alignment explanation
Indices: 12955111--12956090 Score: 1304
Period size: 186 Copynumber: 5.2 Consensus size: 186
12955101 TGTACAAAAA
* * *
12955111 TTAAAAG-AAATTAGTGAAGGCATTTGTTTTTAAAAAATGCCTTCAATAATTATGTACATAAATT
1 TTAAAAGAAAATTAGTGAAGGCATTTGTTCTAAAAAAATACCTTCAATAATTATGTACATAAATT
** *
12955175 AGAAGGAATTAGTGAAGGCATTTTTCTAGAATAAACCCCTTCACTAACCATCTTAAATTTTGAGT
66 AGAAGGAATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAGT
* * *
12955240 TGTGAAAAATTGAAGACGTTTTTCACTGGAAGATGCCTTTAATATTCCCAAAAATT
131 TGTGAAAAATTGAAGGCATTTTTCACTGGAAGATGCCTTTAATAATCCCAAAAATT
* * *
12955296 TTAAGAGAAAATTAGTGAAGGCGTTTGTTCTTAAAAAATACCTTCAATAATTATGTACATAAATT
1 TTAAAAGAAAATTAGTGAAGGCATTTGTTCTAAAAAAATACCTTCAATAATTATGTACATAAATT
* *
12955361 AGAAAGAATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAATCATCTTAAAATTTGAGT
66 AGAAGGAATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAGT
* *
12955426 TGTGAAAAATTGAAGGCATTTTTCACTAGAAGATTCCTTTAATAATCCCAAAAATT
131 TGTGAAAAATTGAAGGCATTTTTCACTGGAAGATGCCTTTAATAATCCCAAAAATT
* * *
12955482 TTAAAAGGAAAA-TAGTGAAAGCGTTTGTTCTAAAAAAATGCCTTCAATAATTATGTACATAAAT
1 TTAAAA-GAAAATTAGTGAAGGCATTTGTTCTAAAAAAATACCTTCAATAATTATGTACATAAAT
* * * * *
12955546 TAGAAGGAATTAGTGAAGGCGTTTATATAGATTGGCAAATGCCTTCATTAACCATCTTAAAATTT
65 TAGAAGGAATTAGTGAAGGCATTTTTCTAGAAT---AAATGCCTTCACTAACCATCTTAAAATTT
* * * * *
12955611 GAGTTGT-AGAAAATTGAAGGCATTTTTCACTAGAAGATGCTTTTGATAATCCTAAAAAAT
127 GAGTTGTGA-AAAATTGAAGGCATTTTTCACTGGAAGATGCCTTTAATAATCCCAAAAATT
* * * * *
12955671 TTAACAAG-AAATTATTAAAGGCATTTATTCTCAAAAAAACACCTTCAATAATTATGTACATCAA
1 TTAA-AAGAAAATTAGTGAAGGCATTTGTTCT-AAAAAAATACCTTCAATAATTATGTACATAAA
* *
12955735 TTAGAAGGAATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAAGCGTCTTAAAATTTGA
64 TTAGAAGGAATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGA
* *
12955800 GTTGTGAAAAATTGAAGGCATTTTTCACTGAAAGATGTCTTTAATAATCCCAAAAATT
129 GTTGTGAAAAATTGAAGGCATTTTTCACTGGAAGATGCCTTTAATAATCCCAAAAATT
* * * * * **
12955858 TTAAGAGAAAATTATTAAAGGCATTTGTTCTAAAAAAATGCCTTTAATAATTATGTATGTAAATT
1 TTAAAAGAAAATTAGTGAAGGCATTTGTTCTAAAAAAATACCTTCAATAATTATGTACATAAATT
* * * *
12955923 AAAAGAAATTAGTGAAGGCATTTTTGTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGT
66 AGAAGGAATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAGT
* * * * * * *
12955988 TGTGAAATATTGAAAGTG-TTTTTTTATTGGAAAACGCCTTTAATAATCTCAAAAATT
131 TGTGAAAAATTG-AAG-GCATTTTTCACTGGAAGATGCCTTTAATAATCCCAAAAATT
* * * *
12956045 TTAAAAGAAAATTATTGAATGCGTTTGTTCTCAAAAAATACCTTCA
1 TTAAAAGAAAATTAGTGAAGGCATTTGTTCTAAAAAAATACCTTCA
12956091 CTAACTGTCC
Statistics
Matches: 700, Mismatches: 82, Indels: 24
0.87 0.10 0.03
Matches are distributed among these distances:
185 6 0.01
186 347 0.50
187 181 0.26
188 6 0.01
189 99 0.14
190 61 0.09
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (186 bp):
TTAAAAGAAAATTAGTGAAGGCATTTGTTCTAAAAAAATACCTTCAATAATTATGTACATAAATT
AGAAGGAATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAACCATCTTAAAATTTGAGT
TGTGAAAAATTGAAGGCATTTTTCACTGGAAGATGCCTTTAATAATCCCAAAAATT
Found at i:12955756 original size:376 final size:370
Alignment explanation
Indices: 12955111--12956090 Score: 1293
Period size: 376 Copynumber: 2.6 Consensus size: 370
12955101 TGTACAAAAA
* * * *
12955111 TTAAAAGAAATTAGTGAAGGCATTTGTTTTTAAAAAATGCCTTCAATAATTATGTACATAAATTA
1 TTAAAAGAAAATAGTGAAAGCATTTGTTCTAAAAAAATGCCTTCAATAATTATGTACATAAATTA
* * *
12955176 GAAGGAATTAGTGAAGGCATTTTTCTAGAATAAACCCCTTCACTAACCATCTTAAATTTTGAGTT
66 GAAGGAATTAGTGAAGGCATTTTTATAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGTT
* * * * *
12955241 GTGAAAAATTGAAGACGTTTTTCACTGGAAGATGCCTTTAATATTCCCAAAAATTTTAAGAGAAA
131 GTG-AAAATTGAAGACATTTTTCACTAGAAGATGCCTTTAATAATCCCAAAAAATTTAAAAGAAA
* * * * *
12955306 ATTAGTGAAGGCGTTTGTTCTTAAAAAATACCTTCAATAATTATGTACATAAATTAGAAAGAATT
195 ATTAGTAAAGGCATTTATTCTAAAAAAACACCTTCAATAATTATGTACATAAATTAGAAAGAATT
*
12955371 AGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAATCATCTTAAAATTTGAGTTGTGAAAAAT
260 AGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAAGCATCTTAAAATTTGAGTTGTGAAAAAT
12955436 TGAAGGCATTTTTCACT-AGAAGAT-TCCTTTAATAATCCCAAAAATT
325 TGAAGGCATTTTTCACTGA-AAGATGT-CTTTAATAATCCCAAAAATT
*
12955482 TTAAAAGGAAAATAGTGAAAGCGTTTGTTCTAAAAAAATGCCTTCAATAATTATGTACATAAATT
1 TTAAAA-GAAAATAGTGAAAGCATTTGTTCTAAAAAAATGCCTTCAATAATTATGTACATAAATT
* * * * *
12955547 AGAAGGAATTAGTGAAGGCGTTTATATAGATTGGCAAATGCCTTCATTAACCATCTTAAAATTTG
65 AGAAGGAATTAGTGAAGGCATTTTTATAGAAT---AAACGCCTTCACTAACCATCTTAAAATTTG
* * * *
12955612 AGTTGTAGAAAATTGAAGGCATTTTTCACTAGAAGATGCTTTTGATAATCCTAAAAAATTTAACA
127 AGTTGT-GAAAATTGAAGACATTTTTCACTAGAAGATGCCTTTAATAATCCCAAAAAATTTAA-A
* *
12955677 AG-AAATTATTAAAGGCATTTATTCTCAAAAAAACACCTTCAATAATTATGTACATCAATTAGAA
190 AGAAAATTAGTAAAGGCATTTATTCT-AAAAAAACACCTTCAATAATTATGTACATAAATTAGAA
* *
12955741 GGAATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAAGCGTCTTAAAATTTGAGTTGTG
254 AGAATTAGTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAAGCATCTTAAAATTTGAGTTGTG
12955806 AAAAATTGAAGGCATTTTTCACTGAAAGATGTCTTTAATAATCCCAAAAATT
319 AAAAATTGAAGGCATTTTTCACTGAAAGATGTCTTTAATAATCCCAAAAATT
* * * **
12955858 TTAAGAGAAAATTA-TTAAAGGCATTTGTTCTAAAAAAATGCCTTTAATAATTATGTATGTAAAT
1 TTAAAAGAAAA-TAGTGAAA-GCATTTGTTCTAAAAAAATGCCTTCAATAATTATGTACATAAAT
* * *
12955922 TAAAAGAAATTAGTGAAGGCATTTTTGTAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAG
64 TAGAAGGAATTAGTGAAGGCATTTTTATAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAG
*** * * * * * * *
12955987 TTGTGAAATATTGAAAGTGTTTTTTTATTGGAAAACGCCTTTAATAATCTCAAAAATTTTAAAAG
129 TTGTGAAA-ATTG-AAGACATTTTTCACTAGAAGATGCCTTTAATAATCCCAAAAAATTTAAAAG
* * * * * * *
12956052 AAAATTATTGAATGCGTTTGTTCTCAAAAAATACCTTCA
192 AAAATTAGTAAAGGCATTTATTCTAAAAAAACACCTTCA
12956091 CTAACTGTCC
Statistics
Matches: 530, Mismatches: 65, Indels: 26
0.85 0.10 0.04
Matches are distributed among these distances:
371 6 0.01
372 85 0.16
373 54 0.10
374 54 0.10
375 107 0.20
376 222 0.42
377 2 0.00
ACGTcount: A:0.40, C:0.12, G:0.14, T:0.34
Consensus pattern (370 bp):
TTAAAAGAAAATAGTGAAAGCATTTGTTCTAAAAAAATGCCTTCAATAATTATGTACATAAATTA
GAAGGAATTAGTGAAGGCATTTTTATAGAATAAACGCCTTCACTAACCATCTTAAAATTTGAGTT
GTGAAAATTGAAGACATTTTTCACTAGAAGATGCCTTTAATAATCCCAAAAAATTTAAAAGAAAA
TTAGTAAAGGCATTTATTCTAAAAAAACACCTTCAATAATTATGTACATAAATTAGAAAGAATTA
GTGAAGGCATTTTTCTAGAATAAATGCCTTCACTAAGCATCTTAAAATTTGAGTTGTGAAAAATT
GAAGGCATTTTTCACTGAAAGATGTCTTTAATAATCCCAAAAATT
Found at i:12956058 original size:125 final size:121
Alignment explanation
Indices: 12955921--12956340 Score: 290
Period size: 125 Copynumber: 3.4 Consensus size: 121
12955911 TGTATGTAAA
12955921 TTAAAAG-AAATTAGTGAAGGCATTTTTGTAGAATAAACGCCTTCACTAACCATCTTAAAATTTG
1 TTAAAAGAAAATTAGTGAAGGCATTTTTGTAGAA-AAACGCCTTCACTAACC-TCTTAAAATTTG
* * *
12955985 AGTTGTGAAATATTGAAAGTGTTTTTTTATTGGAAAACGCCTTTAATAATCTCAAAAATT
64 AGTAGTGAAATATTGAAAGTG-TTTTTTA-TAGAAAACACCTTTAATAATCTCAAAAATT
* * * * ** * * *
12956045 TTAAAAGAAAATTATTGAATGCGTTTGTTCTCA-AAAAATACCTTCACTAACTGTCCTAAAGTTT
1 TTAAAAGAAAATTAGTGAAGGCATTT-TTGT-AGAAAAACGCCTTCACTAAC-CTCTTAAAATTT
* * * * * * * * ****
12956109 GAGTGGTGGAACATTGAATGTGTTTTTCACTAGAAGACACCTTCAATAAATTTTTTCAA--
63 GAGTAGTGAAATATTGAAAGTGTTTTTTA-TAGAAAACACCTTTAAT-AATCTCAAAAATT
* * * * * * * * * *
12956168 TAAAAAAAAAATTAGTCAAGGTATTTTTTTGGAATAAACGCCTTCAATGACCCCTTAAAATTTTA
1 TTAAAAGAAAATTAGTGAAGGCATTTTTGTAGAA-AAACGCCTTCACTAACCTCTTAAAATTTGA
* * * * *
12956233 GAAGTGTAATATTAAAAGTGTTTTGTATAGAAAACACCTTTAATAATCCCAAACAATTT
65 GTAGTGAAATATTGAAAGTGTTTTTTATAGAAAACACCTTTAATAATCTCAAA-AA-TT
* * * **
12956292 TTAAAAAGGAAATTATTAAAGGCATTTTTAGTAGAAAATTGCCTTCACT
1 TT-AAAAGAAAATTAGTGAAGGCATTTTT-GTAGAAAAACGCCTTCACT
12956341 GATATTCACA
Statistics
Matches: 214, Mismatches: 69, Indels: 25
0.69 0.22 0.08
Matches are distributed among these distances:
120 3 0.01
121 17 0.08
122 33 0.15
123 31 0.14
124 27 0.13
125 93 0.43
126 9 0.04
127 1 0.00
ACGTcount: A:0.39, C:0.13, G:0.14, T:0.35
Consensus pattern (121 bp):
TTAAAAGAAAATTAGTGAAGGCATTTTTGTAGAAAAACGCCTTCACTAACCTCTTAAAATTTGAG
TAGTGAAATATTGAAAGTGTTTTTTATAGAAAACACCTTTAATAATCTCAAAAATT
Found at i:12964841 original size:2 final size:2
Alignment explanation
Indices: 12964828--12964863 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
12964818 ACAATCAGAC
*
12964828 TA TA TA TC TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
12964864 AACCCGTCAG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:12965850 original size:11 final size:11
Alignment explanation
Indices: 12965834--12965864 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
12965824 AATCCCATAA
12965834 GAGATTTGTTT
1 GAGATTTGTTT
12965845 GAGATTTGTTT
1 GAGATTTGTTT
12965856 GAGATTTGT
1 GAGATTTGT
12965865 CAGATATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:12965977 original size:52 final size:51
Alignment explanation
Indices: 12965889--12966045 Score: 188
Period size: 52 Copynumber: 3.0 Consensus size: 51
12965879 TGGACAAGAA
* * *
12965889 GACTTGCAAAAGAAGAATTTCAAGAGAAAAGAGATTCTTAATAGGTAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGAG-AAAGGGATTCTTAATAGGTAAGTTT
* *
12965941 GACTTGCAAGAGAAGAATTTTAAAACGAAAGGGATTCTTAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGA-GAAAGGGATTCTTAATAGGTAAGTTT
* * * * * *
12965993 GACTTACAGGAGAAAAATTCTAAGAGGAGAGGGATTCTTAATGGGTAAGTTT
1 GACTTGCAAGAGAAGAATTTTAAGA-GAAAGGGATTCTTAATAGGTAAGTTT
12966045 G
1 G
12966046 TATGGTTATA
Statistics
Matches: 90, Mismatches: 14, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
52 89 0.99
53 1 0.01
ACGTcount: A:0.40, C:0.08, G:0.25, T:0.27
Consensus pattern (51 bp):
GACTTGCAAGAGAAGAATTTTAAGAGAAAGGGATTCTTAATAGGTAAGTTT
Found at i:12966921 original size:11 final size:11
Alignment explanation
Indices: 12966905--12966935 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
12966895 AATCCCATAA
12966905 GAGATTTGTTT
1 GAGATTTGTTT
12966916 GAGATTTGTTT
1 GAGATTTGTTT
12966927 GAGATTTGT
1 GAGATTTGT
12966936 CAGATATTGC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.19, C:0.00, G:0.29, T:0.52
Consensus pattern (11 bp):
GAGATTTGTTT
Found at i:12967046 original size:52 final size:52
Alignment explanation
Indices: 12966960--12967115 Score: 176
Period size: 52 Copynumber: 3.0 Consensus size: 52
12966950 TGGACAAGAA
* *
12966960 GACTTGCGAA-AGAAGAATT-T-CAAGAGAAAGGAGATTCTTAATAGGTAAGTTT
1 GACTTGC-AAGAGAAGAATTCTAAAAG-GAAA-GAGATTCTTAATAGGCAAGTTT
*
12967012 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGAGATTCTCAATAGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGAGATTCTTAATAGGCAAGTTT
* * * * * *
12967064 GACTTACAGGAGAA-AAATCTAAGAGGAAAGGGATTCTTAATGGGCAAGTTT
1 GACTTGCAAGAGAAGAATTCTAAAAGGAAAGAGATTCTTAATAGGCAAGTTT
12967115 G
1 G
12967116 TATGGTTATA
Statistics
Matches: 91, Mismatches: 10, Indels: 7
0.84 0.09 0.06
Matches are distributed among these distances:
51 35 0.38
52 48 0.53
53 5 0.05
54 3 0.03
ACGTcount: A:0.40, C:0.10, G:0.26, T:0.24
Consensus pattern (52 bp):
GACTTGCAAGAGAAGAATTCTAAAAGGAAAGAGATTCTTAATAGGCAAGTTT
Found at i:12967110 original size:51 final size:52
Alignment explanation
Indices: 12966981--12967115 Score: 175
Period size: 51 Copynumber: 2.6 Consensus size: 52
12966971 GAAGAATTTC
* * *
12966981 AAGA-GAAAGGAGATTCTTAATAGGTAAGTTTGACTTGCAAGAGAAGAATTCT
1 AAGAGGAAAGG-GATTCTTAATAGGCAAGTTTGACTTACAAGAGAAGAAATCT
* * * *
12967033 AAAAGGAAAGAGATTCTCAATAGGCAAGTTTGACTTACAGGAGAA-AAATCT
1 AAGAGGAAAGGGATTCTTAATAGGCAAGTTTGACTTACAAGAGAAGAAATCT
*
12967084 AAGAGGAAAGGGATTCTTAATGGGCAAGTTTG
1 AAGAGGAAAGGGATTCTTAATAGGCAAGTTTG
12967116 TATGGTTATA
Statistics
Matches: 71, Mismatches: 11, Indels: 3
0.84 0.13 0.04
Matches are distributed among these distances:
51 33 0.46
52 33 0.46
53 5 0.07
ACGTcount: A:0.41, C:0.09, G:0.26, T:0.24
Consensus pattern (52 bp):
AAGAGGAAAGGGATTCTTAATAGGCAAGTTTGACTTACAAGAGAAGAAATCT
Found at i:12974906 original size:19 final size:18
Alignment explanation
Indices: 12974874--12974909 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
12974864 CCTCCTCAGG
12974874 TTTTATTTTATTTTTTAT
1 TTTTATTTTATTTTTTAT
*
12974892 TTTTAATTTTTTTTTTTA
1 TTTT-ATTTTATTTTTTA
12974910 CGATAGTATA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 4 0.25
19 12 0.75
ACGTcount: A:0.17, C:0.00, G:0.00, T:0.83
Consensus pattern (18 bp):
TTTTATTTTATTTTTTAT
Found at i:12976859 original size:2 final size:2
Alignment explanation
Indices: 12976854--12976884 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
12976844 ATAACCTTCA
*
12976854 AT AT AT AT AT AC AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
12976885 ACTGAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:12979016 original size:36 final size:35
Alignment explanation
Indices: 12978950--12979028 Score: 88
Period size: 36 Copynumber: 2.3 Consensus size: 35
12978940 AAATAAACAC
* *
12978950 TTAATTAT-ATACAAATAAATATTAAAATAATTGA
1 TTAATTATAATAAAAATAAAAATTAAAATAATTGA
* * **
12978984 TTAATTATAATAAAAAATAAAAATTTAGATAATTTT
1 TTAATTATAAT-AAAAATAAAAATTAAAATAATTGA
12979020 TTAATTATA
1 TTAATTATA
12979029 GTTCAAAACT
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
34 8 0.22
35 2 0.05
36 27 0.73
ACGTcount: A:0.54, C:0.01, G:0.03, T:0.42
Consensus pattern (35 bp):
TTAATTATAATAAAAATAAAAATTAAAATAATTGA
Found at i:12983307 original size:48 final size:46
Alignment explanation
Indices: 12983218--12983309 Score: 121
Period size: 48 Copynumber: 2.0 Consensus size: 46
12983208 AAAAATTAAT
* * **
12983218 TTATTTTTTAATTATTATTTTTATTAAATTTTATTCGAAGAAATTG
1 TTATTTTTTAATTATTATTTTTATTAAAATTTACTAAAAGAAATTG
*
12983264 TTATGTTTTTAATTATTATTTTTTATTAAAATTTGCTAAAAGAAAT
1 TTAT-TTTTTAATTATTA-TTTTTATTAAAATTTACTAAAAGAAAT
12983310 GAATTATTGG
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
46 4 0.10
47 13 0.33
48 22 0.56
ACGTcount: A:0.35, C:0.02, G:0.07, T:0.57
Consensus pattern (46 bp):
TTATTTTTTAATTATTATTTTTATTAAAATTTACTAAAAGAAATTG
Found at i:12985553 original size:19 final size:21
Alignment explanation
Indices: 12985516--12985554 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
12985506 ACATTAGAAG
12985516 GATTCTTGATATGTTCTTGGT
1 GATTCTTGATATGTTCTTGGT
12985537 GATTCTTGAT-T-TTCTTGG
1 GATTCTTGATATGTTCTTGG
12985555 AAATCTTGAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 7 0.39
20 1 0.06
21 10 0.56
ACGTcount: A:0.13, C:0.10, G:0.23, T:0.54
Consensus pattern (21 bp):
GATTCTTGATATGTTCTTGGT
Found at i:12986382 original size:24 final size:24
Alignment explanation
Indices: 12986350--12986396 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
12986340 TATTCTTGAA
*
12986350 TTTGGTTTTAAGCTTTCTTTAATC
1 TTTGATTTTAAGCTTTCTTTAATC
** *
12986374 TTTGATTTTTTGCTTTGTTTAAT
1 TTTGATTTTAAGCTTTCTTTAAT
12986397 ATTAGTTTGT
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.15, C:0.09, G:0.13, T:0.64
Consensus pattern (24 bp):
TTTGATTTTAAGCTTTCTTTAATC
Found at i:12986465 original size:21 final size:22
Alignment explanation
Indices: 12986441--12986482 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
12986431 TCAATTAAAT
12986441 TTTG-TTTTACATTA-TTTTCAA
1 TTTGATTTT-CATTAGTTTTCAA
12986462 TTTGATTTTCATTAGTTTTCA
1 TTTGATTTTCATTAGTTTTCA
12986483 TTCAATTGGT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
21 9 0.47
22 10 0.53
ACGTcount: A:0.21, C:0.10, G:0.07, T:0.62
Consensus pattern (22 bp):
TTTGATTTTCATTAGTTTTCAA
Found at i:12987977 original size:22 final size:22
Alignment explanation
Indices: 12987952--12987997 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
12987942 ATATAGTTAT
12987952 AAGAAAAAGAGTATCGTCTCAC
1 AAGAAAAAGAGTATCGTCTCAC
* * *
12987974 AAGAATAAGAGTATTGTTTCAC
1 AAGAAAAAGAGTATCGTCTCAC
12987996 AA
1 AA
12987998 AGATTATGTA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.46, C:0.13, G:0.17, T:0.24
Consensus pattern (22 bp):
AAGAAAAAGAGTATCGTCTCAC
Found at i:12992473 original size:27 final size:25
Alignment explanation
Indices: 12992413--12992475 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
12992403 TTATGTTTTT
**
12992413 ATGTTTTATTTGCACACATTGAGTT
1 ATGTTTTATTTGCACACATTGAGCA
*
12992438 TTGTTTTATTTGCACACATTGAGGACA
1 ATGTTTTATTTGCACACATTGA-G-CA
*
12992465 ATGTGTTATTT
1 ATGTTTTATTT
12992476 AAGTTGGGAG
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 21 0.68
26 1 0.03
27 9 0.29
ACGTcount: A:0.24, C:0.11, G:0.17, T:0.48
Consensus pattern (25 bp):
ATGTTTTATTTGCACACATTGAGCA
Found at i:12994029 original size:19 final size:21
Alignment explanation
Indices: 12993992--12994031 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
12993982 GCATTAGAAG
12993992 GATTCTTGATATGTTCTTGGT
1 GATTCTTGATATGTTCTTGGT
12994013 GATTCTTGA-AT-TTCTTGGT
1 GATTCTTGATATGTTCTTGGT
12994032 TTTCTTGGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 8 0.42
20 2 0.11
21 9 0.47
ACGTcount: A:0.15, C:0.10, G:0.23, T:0.53
Consensus pattern (21 bp):
GATTCTTGATATGTTCTTGGT
Found at i:12994909 original size:4 final size:4
Alignment explanation
Indices: 12994900--12995022 Score: 71
Period size: 4 Copynumber: 30.8 Consensus size: 4
12994890 TTTTATGTAT
*
12994900 TTTA TTTA TTTA -TTA TTACTA TGTA TTTA TTTA TTTA TTTA -TTA TTAATA
1 TTTA TTTA TTTA TTTA TT--TA TTTA TTTA TTTA TTTA TTTA TTTA TT--TA
* * * * *
12994950 TTTA TATA TAT- TTTA TTTA TATA GTTA TATA TTTA -TTA TTATA TTATAA
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TT-TA TT-T-A
*
12994999 TTTA TGTA -TTA -TTA -TTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTT
12995023 TTGGTATATT
Statistics
Matches: 96, Mismatches: 12, Indels: 22
0.74 0.09 0.17
Matches are distributed among these distances:
3 19 0.20
4 60 0.62
5 7 0.07
6 10 0.10
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.65
Consensus pattern (4 bp):
TTTA
Found at i:12994911 original size:17 final size:16
Alignment explanation
Indices: 12994891--12995022 Score: 80
Period size: 17 Copynumber: 8.2 Consensus size: 16
12994881 TCTTGTGTAT
12994891 TTTATGTATTTTATTTA
1 TTTAT-TATTTTATTTA
*
12994908 TTTATTA--TTA-CTA
1 TTTATTATTTTATTTA
*
12994921 TGTATT-TATTTATTTA
1 TTTATTAT-TTTATTTA
*
12994937 TTTATTATTAATATTTA
1 TTTATTATT-TTATTTA
*
12994954 TATA-TATTTTATTTA
1 TTTATTATTTTATTTA
* *
12994969 TATAGTTA-TATATTTA
1 TTTA-TTATTTTATTTA
12994985 -TTATTATATTATAATTTA
1 TTTATTAT-TT-T-ATTTA
*
12995003 TGTATTATTATTATTTA
1 TTTATTATT-TTATTTA
12995020 TTT
1 TTT
12995023 TTGGTATATT
Statistics
Matches: 89, Mismatches: 12, Indels: 28
0.69 0.09 0.22
Matches are distributed among these distances:
13 7 0.08
14 6 0.07
15 15 0.17
16 22 0.25
17 25 0.28
18 7 0.08
19 7 0.08
ACGTcount: A:0.31, C:0.01, G:0.03, T:0.65
Consensus pattern (16 bp):
TTTATTATTTTATTTA
Found at i:12994916 original size:25 final size:25
Alignment explanation
Indices: 12994893--12995022 Score: 94
Period size: 25 Copynumber: 5.4 Consensus size: 25
12994883 TTGTGTATTT
12994893 TATGTATTTTATTTATTTATTATTAC
1 TATGTA-TTTATTTATTTATTATTAC
*
12994919 TATGTATTTATTTATTTATTTATTAT
1 TATGTATTTATTTATTTA-TTATTAC
* *
12994945 TA-ATATTTATATATATT-TTATT--
1 TATGTATTTATTTAT-TTATTATTAC
* * *
12994967 TATATAGTTATATATTTATTATTA-
1 TATGTATTTATTTATTTATTATTAC
* * *
12994991 TAT-TA-TAATTTATGTATTATTAT
1 TATGTATTTATTTATTTATTATTAC
*
12995014 TATTTATTT
1 TATGTATTT
12995023 TTGGTATATT
Statistics
Matches: 88, Mismatches: 8, Indels: 17
0.78 0.07 0.15
Matches are distributed among these distances:
22 18 0.20
23 21 0.24
24 10 0.11
25 23 0.26
26 16 0.18
ACGTcount: A:0.32, C:0.01, G:0.03, T:0.65
Consensus pattern (25 bp):
TATGTATTTATTTATTTATTATTAC
Found at i:12994937 original size:29 final size:29
Alignment explanation
Indices: 12994900--12995022 Score: 99
Period size: 29 Copynumber: 4.1 Consensus size: 29
12994890 TTTTATGTAT
* *
12994900 TTTATTTATTTATTATTACTATGTATTTA
1 TTTATTTATTTATTATTAATATGTATATA
*
12994929 TTTATTTATTTATTATTAATATTTATATA
1 TTTATTTATTTATTATTAATATGTATATA
* *
12994958 TAT-TTTATTTATATAGTTATATATTTAT-TA
1 TTTATTTATTTAT-TA-TTA-ATATGTATATA
* *
12994988 TTATATTATAATTTATGTATTATTAT-TATTTA
1 TT-TATT-T-ATTTAT-TATTAATATGTATATA
12995020 TTT
1 TTT
12995023 TTGGTATATT
Statistics
Matches: 79, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
28 9 0.11
29 30 0.38
30 6 0.08
31 13 0.16
32 9 0.11
33 4 0.05
34 8 0.10
ACGTcount: A:0.32, C:0.01, G:0.02, T:0.65
Consensus pattern (29 bp):
TTTATTTATTTATTATTAATATGTATATA
Found at i:12994977 original size:23 final size:22
Alignment explanation
Indices: 12994930--12994993 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 22
12994920 ATGTATTTAT
* *
12994930 TTATTTATTTATTATTA-ATAT
1 TTATATATTTATTATTATATAG
12994951 TTATATATATT-TTATTTATATAG
1 TTATATAT-TTATTA-TTATATAG
12994974 TTATATATTTATTATTATAT
1 TTATATATTTATTATTATAT
12994994 TATAATTTAT
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
21 10 0.27
22 13 0.35
23 14 0.38
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (22 bp):
TTATATATTTATTATTATATAG
Found at i:12995091 original size:16 final size:17
Alignment explanation
Indices: 12995065--12995099 Score: 63
Period size: 16 Copynumber: 2.1 Consensus size: 17
12995055 TTAATAATTT
12995065 TTTTCTCGTTTATCTGA
1 TTTTCTCGTTTATCTGA
12995082 TTTT-TCGTTTATCTGA
1 TTTTCTCGTTTATCTGA
12995098 TT
1 TT
12995100 ATTATTATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.11, C:0.14, G:0.11, T:0.63
Consensus pattern (17 bp):
TTTTCTCGTTTATCTGA
Found at i:12995936 original size:8 final size:9
Alignment explanation
Indices: 12995925--12996034 Score: 52
Period size: 9 Copynumber: 12.0 Consensus size: 9
12995915 TTTTTTTGGA
12995925 ATTT-TTTT
1 ATTTATTTT
12995933 ATTTATTTT
1 ATTTATTTT
**
12995942 -TTTATTAG
1 ATTTATTTT
*
12995950 A-TTAGATTT
1 ATTTA-TTTT
12995959 ATTTAATATTT
1 ATTT-AT-TTT
12995970 -TTTATCTTT
1 ATTTAT-TTT
12995979 ATCTTATTTTT
1 AT-TTA-TTTT
*
12995990 ATTT-TTGT
1 ATTTATTTT
12995998 -TTTACTTTT
1 ATTTA-TTTT
*
12996007 CTTTATTTT
1 ATTTATTTT
*
12996016 TTTTATCTTT
1 ATTTAT-TTT
12996026 ATTTATTTT
1 ATTTATTTT
12996035 CACTTTTATT
Statistics
Matches: 78, Mismatches: 11, Indels: 25
0.68 0.10 0.22
Matches are distributed among these distances:
7 3 0.04
8 16 0.21
9 26 0.33
10 20 0.26
11 12 0.15
12 1 0.01
ACGTcount: A:0.19, C:0.05, G:0.03, T:0.74
Consensus pattern (9 bp):
ATTTATTTT
Found at i:12995990 original size:27 final size:27
Alignment explanation
Indices: 12995960--12996016 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
12995950 ATTAGATTTA
12995960 TTTAATATT-TTTTATCTTTATC-TTATT
1 TTTAATATTGTTTTA-CTTT-TCTTTATT
* *
12995987 TTTATTTTTGTTTTACTTTTCTTTATT
1 TTTAATATTGTTTTACTTTTCTTTATT
12996014 TTT
1 TTT
12996017 TTTATCTTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
26 2 0.08
27 19 0.73
28 5 0.19
ACGTcount: A:0.16, C:0.07, G:0.02, T:0.75
Consensus pattern (27 bp):
TTTAATATTGTTTTACTTTTCTTTATT
Found at i:12996024 original size:15 final size:15
Alignment explanation
Indices: 12995967--12996034 Score: 66
Period size: 15 Copynumber: 4.3 Consensus size: 15
12995957 TTATTTAATA
12995967 TTTTTTATCTTTATCT
1 TTTTTTATCTTTAT-T
* *
12995983 TATTTTTATTTTTGTT
1 T-TTTTTATCTTTATT
*
12995999 TTACTTT-TCTTTATT
1 TT-TTTTATCTTTATT
12996014 TTTTTTATCTTTATT
1 TTTTTTATCTTTATT
12996029 TATTTT
1 T-TTTT
12996035 CACTTTTATT
Statistics
Matches: 42, Mismatches: 6, Indels: 8
0.75 0.11 0.14
Matches are distributed among these distances:
14 3 0.07
15 18 0.43
16 10 0.24
17 11 0.26
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.78
Consensus pattern (15 bp):
TTTTTTATCTTTATT
Found at i:12996054 original size:22 final size:22
Alignment explanation
Indices: 12996016--12996057 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
12996006 TCTTTATTTT
12996016 TTTTATCTTTATTTATTTTCAC
1 TTTTATCTTTATTTATTTTCAC
*
12996038 TTTTAT-TTTGTTCTATTTTC
1 TTTTATCTTTATT-TATTTTC
12996058 TTTAAATAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.14, C:0.12, G:0.02, T:0.71
Consensus pattern (22 bp):
TTTTATCTTTATTTATTTTCAC
Found at i:12996140 original size:57 final size:57
Alignment explanation
Indices: 12996070--12996450 Score: 424
Period size: 57 Copynumber: 6.8 Consensus size: 57
12996060 TAAATAAAAA
12996070 TCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
1 TCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
* *
12996127 TTAAAAAATATTTTTGGGGAAAAGTTG-AAGTATCAATTTTCCTTGAAAATAAAAATTT
1 TCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAA-ATAAATTT
* * * ** **
12996185 TCGAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCCTTGGAAATCAAGGTT
1 TCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTT
* *
12996243 TCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTT
1 TC---AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
* *
12996303 TCAAAAAATATTTTTGGGAAAAAGTTGAAAGTATCAATTTTCCTT-AAAATAAA-AT
1 TCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
*** ** * *
12996358 TCAAAAAAGGGTTTTAAGGAAAAGTT-AAAGTATCAA-TTT-CTT-GAAATCAAAGTT
1 TCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAATTT
* *
12996412 CCAAAAAA-A-ATTT-GGG-AAAGTTGAAAGTATCAATTTTCC
1 TCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
12996451 CTACACAAGA
Statistics
Matches: 278, Mismatches: 34, Indels: 28
0.82 0.10 0.08
Matches are distributed among these distances:
50 6 0.02
51 12 0.04
52 13 0.05
53 7 0.03
54 18 0.06
55 21 0.08
56 24 0.09
57 72 0.26
58 38 0.14
59 17 0.06
60 6 0.02
61 44 0.16
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (57 bp):
TCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT
Found at i:13000671 original size:22 final size:23
Alignment explanation
Indices: 13000646--13000704 Score: 77
Period size: 22 Copynumber: 2.7 Consensus size: 23
13000636 GAATGTTTTG
*
13000646 ATGAGAATTTTTGAGAACTC-AA
1 ATGAGAATCTTTGAGAACTCAAA
**
13000668 ATGAGAATCTTTGA-ATTTCAAA
1 ATGAGAATCTTTGAGAACTCAAA
13000690 ATGAGAATCTTTGAG
1 ATGAGAATCTTTGAG
13000705 GAGTGAAACC
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
21 3 0.09
22 29 0.91
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.34
Consensus pattern (23 bp):
ATGAGAATCTTTGAGAACTCAAA
Found at i:13000964 original size:43 final size:42
Alignment explanation
Indices: 13000888--13000969 Score: 103
Period size: 43 Copynumber: 1.9 Consensus size: 42
13000878 GCCTTTGAAC
* * *
13000888 TCAAATGAAAAGCTTTGAATTTTTAGATGTGAATTTCCAAAAT
1 TCAAATAAAAAGCTTTGAACTTTTAGATATGAA-TTCCAAAAT
*
13000931 TCAAATAAAAAGCTTT-AGACTTTTGGATATGAATTCCAA
1 TCAAATAAAAAGCTTTGA-ACTTTTAGATATGAATTCCAA
13000970 GTTTGCCAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
42 7 0.21
43 27 0.79
ACGTcount: A:0.40, C:0.11, G:0.13, T:0.35
Consensus pattern (42 bp):
TCAAATAAAAAGCTTTGAACTTTTAGATATGAATTCCAAAAT
Found at i:13001290 original size:43 final size:42
Alignment explanation
Indices: 13001233--13001452 Score: 302
Period size: 43 Copynumber: 5.2 Consensus size: 42
13001223 GACATGATTG
* *
13001233 TTAG-GGAGCAATTTACTTTTCTAAAAGTCGTGGTGCCTCTAT
1 TTAGAGGAGCAATTTACTTTTC-CAAAGTCGTGGTGCCTCTGT
* *
13001275 TTAGAGGAGAAATTTAC-TTTCCAAAGTCGTGGTGCCTTTGT
1 TTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGT
13001316 TTAGAGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGT
1 TTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGT
* *
13001357 TTAGAGGAGTAATTTACTTTCCCGAAAGTCGTGGTGCCTCTGT
1 TTAGAGGAGCAATTTACTTTTCC-AAAGTCGTGGTGCCTCTGT
* * * *
13001400 TTAGAGGAGCAATTTATTTTGTTCAAAGTCGTTGAGCCTCTGT
1 TTAGAGGAGCAATTTACTTT-TCCAAAGTCGTGGTGCCTCTGT
13001443 TTAGAGGAGC
1 TTAGAGGAGC
13001453 TTTGGTAAAA
Statistics
Matches: 160, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
41 72 0.45
42 12 0.08
43 75 0.47
44 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (42 bp):
TTAGAGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGT
Found at i:13001306 original size:41 final size:41
Alignment explanation
Indices: 13001233--13001452 Score: 298
Period size: 41 Copynumber: 5.2 Consensus size: 41
13001223 GACATGATTG
* *
13001233 TTAG-GGAGCAATTTACTTTTCTAAAAGTCGTGGTGCCTCTAT
1 TTAGAGGAGCAATTTAC-TTTC-CAAAGTCGTGGTGCCTCTGT
* *
13001275 TTAGAGGAGAAATTTACTTTCCAAAGTCGTGGTGCCTTTGT
1 TTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGT
13001316 TTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGT
1 TTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGT
*
13001357 TTAGAGGAGTAATTTACTTTCCCGAAAGTCGTGGTGCCTCTGT
1 TTAGAGGAGCAATTTACTTT-CC-AAAGTCGTGGTGCCTCTGT
* * * *
13001400 TTAGAGGAGCAATTTATTTTGTTCAAAGTCGTTGAGCCTCTGT
1 TTAGAGGAGCAATTTA-CTT-TCCAAAGTCGTGGTGCCTCTGT
13001443 TTAGAGGAGC
1 TTAGAGGAGC
13001453 TTTGGTAAAA
Statistics
Matches: 161, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
41 75 0.47
42 10 0.06
43 72 0.45
44 3 0.02
45 1 0.01
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (41 bp):
TTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGT
Found at i:13001401 original size:84 final size:82
Alignment explanation
Indices: 13001233--13001451 Score: 305
Period size: 84 Copynumber: 2.6 Consensus size: 82
13001223 GACATGATTG
* *
13001233 TTAG-GGAGCAATTTACTTTTCTAAAAGTCGTGGTGCCTCTATTTAGAGGAGAAATTTACTTTCC
1 TTAGAGGAGCAATTTAC-TTTC-CAAAGTCGTGGTGCCTCTGTTTAGAGGAGAAATTTACTTTCC
*
13001297 AAAGTCGTGGTGCCTTTGT
64 AAAGTCGTGGTGCCTCTGT
*
13001316 TTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGTAATTTACTTTCCCG
1 TTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGAAATTTACTTT-CC-
13001381 AAAGTCGTGGTGCCTCTGT
64 AAAGTCGTGGTGCCTCTGT
* * * *
13001400 TTAGAGGAGCAATTTATTTTGTTCAAAGTCGTTGAGCCTCTGTTTAGAGGAG
1 TTAGAGGAGCAATTTA-CTT-TCCAAAGTCGTGGTGCCTCTGTTTAGAGGAG
13001452 CTTTGGTAAA
Statistics
Matches: 123, Mismatches: 8, Indels: 7
0.89 0.06 0.05
Matches are distributed among these distances:
82 37 0.30
83 10 0.08
84 46 0.37
85 2 0.02
86 28 0.23
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (82 bp):
TTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGAAATTTACTTTCCAA
AGTCGTGGTGCCTCTGT
Found at i:13001781 original size:21 final size:21
Alignment explanation
Indices: 13001746--13001818 Score: 73
Period size: 21 Copynumber: 3.5 Consensus size: 21
13001736 AAATTAATTA
*
13001746 ATTTATTATTAATATTTATAT
1 ATTTATTATTTATATTTATAT
13001767 ATATT-TTATTTATATAGTTATAT
1 AT-TTATTATTTATAT--TTATAT
13001790 ATTTATTA-TTATA-TTATA-
1 ATTTATTATTTATATTTATAT
13001808 ATTTATGTATT
1 ATTTAT-TATT
13001819 ATTATTTTTT
Statistics
Matches: 45, Mismatches: 1, Indels: 13
0.76 0.02 0.22
Matches are distributed among these distances:
18 6 0.13
19 7 0.16
20 1 0.02
21 11 0.24
22 9 0.20
23 11 0.24
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.62
Consensus pattern (21 bp):
ATTTATTATTTATATTTATAT
Found at i:13001787 original size:23 final size:22
Alignment explanation
Indices: 13001746--13001803 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 22
13001736 AAATTAATTA
*
13001746 ATTTATTATTA-ATATTTATAT
1 ATTTATTATTATATAGTTATAT
13001767 ATATT-TTATTTATATAGTTATAT
1 AT-TTATTA-TTATATAGTTATAT
13001790 ATTTATTATTATAT
1 ATTTATTATTATAT
13001804 TATAATTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 7
0.80 0.03 0.17
Matches are distributed among these distances:
21 5 0.16
22 13 0.41
23 14 0.44
ACGTcount: A:0.36, C:0.00, G:0.02, T:0.62
Consensus pattern (22 bp):
ATTTATTATTATATAGTTATAT
Found at i:13001788 original size:19 final size:19
Alignment explanation
Indices: 13001761--13001820 Score: 63
Period size: 19 Copynumber: 3.2 Consensus size: 19
13001751 TTATTAATAT
13001761 TTATA-TATATTTTATTTA
1 TTATATTATATTTTATTTA
13001779 -TATAGTTATATATTTA-TTA
1 TTATA-TTATAT-TTTATTTA
* *
13001798 TTATATTATAATTTATGTA
1 TTATATTATATTTTATTTA
13001817 TTAT
1 TTAT
13001821 TATTTTTTTT
Statistics
Matches: 35, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
17 4 0.11
18 4 0.11
19 19 0.54
20 8 0.23
ACGTcount: A:0.35, C:0.00, G:0.03, T:0.62
Consensus pattern (19 bp):
TTATATTATATTTTATTTA
Found at i:13002783 original size:13 final size:12
Alignment explanation
Indices: 13002763--13002798 Score: 54
Period size: 13 Copynumber: 2.9 Consensus size: 12
13002753 TTTTTTTGGA
13002763 ATTTTTTTATTT
1 ATTTTTTTATTT
13002775 ATTTGTTTTATTT
1 ATTT-TTTTATTT
*
13002788 ATTTATTTATT
1 ATTTTTTTATT
13002799 AGATTAGATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
12 10 0.45
13 12 0.55
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (12 bp):
ATTTTTTTATTT
Found at i:13002788 original size:17 final size:16
Alignment explanation
Indices: 13002764--13002795 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
13002754 TTTTTTGGAA
13002764 TTTTTTTATTTATTTG
1 TTTTTTTATTTATTTG
13002780 TTTTATTTATTTATTT
1 TTTT-TTTATTTATTT
13002796 ATTAGATTAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (16 bp):
TTTTTTTATTTATTTG
Found at i:13002881 original size:18 final size:18
Alignment explanation
Indices: 13002834--13002883 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
13002824 TATCTTTATC
* *
13002834 TTATTTTTATTT-TTGTT
1 TTATCTTTATTTATTCTT
*
13002851 TTA-CTTTTCTTTATTCTT
1 TTATC-TTTATTTATTCTT
13002869 TTATCTTTATTTATT
1 TTATCTTTATTTATT
13002884 TTCACTTTTA
Statistics
Matches: 26, Mismatches: 4, Indels: 5
0.74 0.11 0.14
Matches are distributed among these distances:
17 9 0.35
18 16 0.62
19 1 0.04
ACGTcount: A:0.14, C:0.08, G:0.02, T:0.76
Consensus pattern (18 bp):
TTATCTTTATTTATTCTT
Found at i:13002894 original size:22 final size:22
Alignment explanation
Indices: 13002866--13002908 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
13002856 TTTCTTTATT
13002866 CTTTTATCTTTATT-TATTTTCA
1 CTTTTAT-TTTATTCTATTTTCA
*
13002888 CTTTTATTTTGTTCTATTTTC
1 CTTTTATTTTATTCTATTTTC
13002909 TTTAAATAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 5 0.26
22 14 0.74
ACGTcount: A:0.14, C:0.14, G:0.02, T:0.70
Consensus pattern (22 bp):
CTTTTATTTTATTCTATTTTCA
Found at i:13002990 original size:59 final size:57
Alignment explanation
Indices: 13002924--13003320 Score: 460
Period size: 59 Copynumber: 6.7 Consensus size: 57
13002914 ATAAAAATAA
13002924 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTC
1 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTTC
* * * *
13002982 GAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATGAAAGTTTC
1 -AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTC
* *
13003040 GAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AGAAAT-AAATTTCC
1 ----AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATAAAATTTTC
*
13003100 AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAA-TTTC
1 -AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTC
* * * *
13003157 AAAAAAAGGGTTTTGGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTC
1 AAAAATA--TTTTTGG-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTTC
* * *
13003218 AGAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCC
1 A-AAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAATTTTC
*
13003277 AAAAAAAAAACATTTTTGGGG-AAAGTTGAAAGTATCAATTTTCC
1 -----AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
13003321 CTACACAAGA
Statistics
Matches: 297, Mismatches: 24, Indels: 31
0.84 0.07 0.09
Matches are distributed among these distances:
56 6 0.02
57 49 0.16
58 17 0.06
59 120 0.40
60 14 0.05
61 49 0.16
62 28 0.09
63 13 0.04
64 1 0.00
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (57 bp):
AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAATTTTC
Found at i:13003132 original size:118 final size:117
Alignment explanation
Indices: 13002922--13003320 Score: 552
Period size: 118 Copynumber: 3.4 Consensus size: 117
13002912 AAATAAAAAT
* *
13002922 AAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAATTTTCGAAAA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATC-AAATTTTCAAAAA
* *
13002987 ATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATGAAAGTTTCGA
65 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAGTTTC-A
*
13003042 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT-AGAAAT-AAATTTCCAAAAA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAATCAAATTTTCAAAAA
* *
13003105 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAAATTTCA
65 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTCA
*** * * *
13003158 AAAAAAGGGTTTTGGAGAAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTTCAGAAA
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAA-TTTTCAAAAA
*
13003223 ATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAAGTTTCCAAA
65 ATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT-AAAGTTT-C--A
* *
13003280 AAAAAAACATTTTTG-GGGAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
13003321 CTACACAAGA
Statistics
Matches: 248, Mismatches: 23, Indels: 15
0.87 0.08 0.05
Matches are distributed among these distances:
116 44 0.18
117 11 0.04
118 102 0.41
119 7 0.03
120 48 0.19
121 24 0.10
122 12 0.05
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.33
Consensus pattern (117 bp):
AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATCAAATTTTCAAAAAA
TATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAATAAAGTTTCA
Found at i:13003213 original size:32 final size:32
Alignment explanation
Indices: 13003177--13003273 Score: 89
Period size: 32 Copynumber: 3.2 Consensus size: 32
13003167 TTTTGGAGAA
13003177 AAAGTTGAAAGTATCAATTTTCCTTGAAAATC
1 AAAGTTGAAAGTATCAATTTTCCTTGAAAATC
*** * **
13003209 AAAGTTTTCAG-A-AAATATTT--TTGAGGA--
1 AAAGTTGAAAGTATCAAT-TTTCCTTGAAAATC
13003236 AAAGTTGAAAGTATCAATTTTCCTTGAAAATC
1 AAAGTTGAAAGTATCAATTTTCCTTGAAAATC
13003268 AAAGTT
1 AAAGTT
13003274 TCCAAAAAAA
Statistics
Matches: 46, Mismatches: 12, Indels: 14
0.64 0.17 0.19
Matches are distributed among these distances:
27 8 0.17
28 4 0.09
29 8 0.17
30 8 0.17
31 4 0.09
32 14 0.30
ACGTcount: A:0.41, C:0.09, G:0.14, T:0.35
Consensus pattern (32 bp):
AAAGTTGAAAGTATCAATTTTCCTTGAAAATC
Found at i:13006188 original size:22 final size:22
Alignment explanation
Indices: 13006152--13006194 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
13006142 TAAATCTTCT
* *
13006152 TTAATTTTAGGGATACAAATAC
1 TTAATTCTAGAGATACAAATAC
13006174 TTAATTCTAGAGATACAAATA
1 TTAATTCTAGAGATACAAATA
13006195 TAAATATACA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.44, C:0.09, G:0.12, T:0.35
Consensus pattern (22 bp):
TTAATTCTAGAGATACAAATAC
Found at i:13010065 original size:22 final size:22
Alignment explanation
Indices: 13010037--13010080 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
13010027 CTAAATCTTC
*
13010037 CTTAATTCTAGGGATACAAATA
1 CTTAATTCTAGAGATACAAATA
13010059 CTTAATTCTAGAGATACAAATA
1 CTTAATTCTAGAGATACAAATA
13010081 TAAATATACA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.43, C:0.14, G:0.11, T:0.32
Consensus pattern (22 bp):
CTTAATTCTAGAGATACAAATA
Found at i:13016084 original size:16 final size:15
Alignment explanation
Indices: 13016063--13016104 Score: 52
Period size: 14 Copynumber: 2.9 Consensus size: 15
13016053 TATATTAATA
13016063 AAAAAAATTAAAAAT
1 AAAAAAATTAAAAAT
*
13016078 AACAAAATT-AAAAT
1 AAAAAAATTAAAAAT
*
13016092 AAAAGAA-TAAAAA
1 AAAAAAATTAAAAA
13016105 ACATGTAATT
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 1 0.04
14 14 0.61
15 8 0.35
ACGTcount: A:0.79, C:0.02, G:0.02, T:0.17
Consensus pattern (15 bp):
AAAAAAATTAAAAAT
Found at i:13017095 original size:43 final size:44
Alignment explanation
Indices: 13016976--13017114 Score: 122
Period size: 43 Copynumber: 3.1 Consensus size: 44
13016966 ATTATTAGAG
* * *
13016976 AAAAATTGAAAAAGCTCTTCCTCAACAAAGGCTTTGAAACTTTA
1 AAAAATTGAAAAAGCTCTTCCTCAATAGAGGCGTTGAAACTTTA
* *
13017020 AAAAATCACAAGCAAAAAGCT-TATCCTTAATAGAGGCGTTGATAA-TTT-
1 AAAAAT----TG-AAAAAGCTCT-TCCTCAATAGAGGCGTTGA-AACTTTA
** *
13017068 AAAAATTGAAAAAGCTCTTCCTCAATAGAGGTTTTGAAACTCTA
1 AAAAATTGAAAAAGCTCTTCCTCAATAGAGGCGTTGAAACTTTA
13017112 AAA
1 AAA
13017115 TTTTAAAACA
Statistics
Matches: 75, Mismatches: 10, Indels: 20
0.71 0.10 0.19
Matches are distributed among these distances:
42 2 0.03
43 26 0.35
44 11 0.15
48 8 0.11
49 26 0.35
50 2 0.03
ACGTcount: A:0.44, C:0.16, G:0.13, T:0.27
Consensus pattern (44 bp):
AAAAATTGAAAAAGCTCTTCCTCAATAGAGGCGTTGAAACTTTA
Found at i:13020685 original size:20 final size:21
Alignment explanation
Indices: 13020660--13020698 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
13020650 TTTGATTTTT
*
13020660 TTGATTTT-TCTGATTGATTC
1 TTGATTTTCTCTAATTGATTC
13020680 TTGATTTTCTCTAATTGAT
1 TTGATTTTCTCTAATTGAT
13020699 CCTAATGGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.18, C:0.10, G:0.13, T:0.59
Consensus pattern (21 bp):
TTGATTTTCTCTAATTGATTC
Found at i:13021355 original size:18 final size:19
Alignment explanation
Indices: 13021332--13021455 Score: 75
Period size: 19 Copynumber: 6.7 Consensus size: 19
13021322 AAACATTTAG
13021332 AAGA-TTCAAGATTCTCAA
1 AAGATTTCAAGATTCTCAA
* *
13021350 AAGATTTAAAGGTT-TCCAA
1 AAGATTTCAAGATTCT-CAA
*
13021369 AAAATTTCAAGATTCGT-AA
1 AAGATTTCAAGATTC-TCAA
*
13021388 AAGATTTCAAGATT-T-ACG
1 AAGATTTCAAGATTCTCA-A
* * *
13021406 AAGGTTTTAAGATTCAC-A
1 AAGATTTCAAGATTCTCAA
*
13021424 AAGATTACAAG-TT-TCACA
1 AAGATTTCAAGATTCTCA-A
*
13021442 AAGATTCCAAGATT
1 AAGATTTCAAGATT
13021456 TGCAAAGAAT
Statistics
Matches: 80, Mismatches: 16, Indels: 19
0.70 0.14 0.17
Matches are distributed among these distances:
16 1 0.01
17 4 0.05
18 36 0.45
19 38 0.47
21 1 0.01
ACGTcount: A:0.43, C:0.13, G:0.14, T:0.31
Consensus pattern (19 bp):
AAGATTTCAAGATTCTCAA
Found at i:13021463 original size:18 final size:18
Alignment explanation
Indices: 13021418--13021452 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
13021408 GGTTTTAAGA
13021418 TTCACAAAGATTACAAGT
1 TTCACAAAGATTACAAGT
*
13021436 TTCACAAAGATTCCAAG
1 TTCACAAAGATTACAAG
13021453 ATTTGCAAAG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.43, C:0.20, G:0.11, T:0.26
Consensus pattern (18 bp):
TTCACAAAGATTACAAGT
Found at i:13021527 original size:35 final size:35
Alignment explanation
Indices: 13021487--13021554 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
13021477 ATAATTGTAA
13021487 AGATTCACAAAGATCAAAGATCCACAAAGATTCTT
1 AGATTCACAAAGATCAAAGATCCACAAAGATTCTT
** * *
13021522 AGATTCGTAAAGATCCAAGATTCACAAAGATTC
1 AGATTCACAAAGATCAAAGATCCACAAAGATTC
13021555 CAAATATTCA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
35 29 1.00
ACGTcount: A:0.44, C:0.19, G:0.13, T:0.24
Consensus pattern (35 bp):
AGATTCACAAAGATCAAAGATCCACAAAGATTCTT
Found at i:13021653 original size:17 final size:17
Alignment explanation
Indices: 13021631--13021669 Score: 51
Period size: 17 Copynumber: 2.3 Consensus size: 17
13021621 AAGAATTTTT
*
13021631 AGATTCAAAAGGATTAA
1 AGATTCAAAAGAATTAA
* *
13021648 AGATTCACAAGAATTTA
1 AGATTCAAAAGAATTAA
13021665 AGATT
1 AGATT
13021670 TGTAAGAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.49, C:0.08, G:0.15, T:0.28
Consensus pattern (17 bp):
AGATTCAAAAGAATTAA
Found at i:13021713 original size:16 final size:16
Alignment explanation
Indices: 13021668--13021716 Score: 53
Period size: 16 Copynumber: 3.1 Consensus size: 16
13021658 GAATTTAAGA
* *
13021668 TTTGTAAGAATTCAAA
1 TTTGCAAGAATTCAAT
* **
13021684 TTCGCAAGTTTTCAAT
1 TTTGCAAGAATTCAAT
13021700 TTTGCAAGAATTCAAT
1 TTTGCAAGAATTCAAT
13021716 T
1 T
13021717 CTCAAAATTT
Statistics
Matches: 25, Mismatches: 8, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.35, C:0.12, G:0.12, T:0.41
Consensus pattern (16 bp):
TTTGCAAGAATTCAAT
Found at i:13022318 original size:24 final size:24
Alignment explanation
Indices: 13022283--13022437 Score: 180
Period size: 24 Copynumber: 6.7 Consensus size: 24
13022273 ACTCAAAGAC
*
13022283 AAAGATTTTCATTTAAAACTTCTT
1 AAAGATTCTCATTTAAAACTTCTT
* *
13022307 AAAGATTGTCATTTAAAACTTTTT
1 AAAGATTCTCATTTAAAACTTCTT
13022331 AAAGATTCTCATTTAAAAC-TCTTT
1 AAAGATTCTCATTTAAAACTTC-TT
* *
13022355 AAATATTCTCATTTAAAACTCCTT
1 AAAGATTCTCATTTAAAACTTCTT
*
13022379 AAAGATTCTCATTTAAAA---CTA
1 AAAGATTCTCATTTAAAACTTCTT
*
13022400 AAAGATTCTTATTTAAAA---CTT
1 AAAGATTCTCATTTAAAACTTCTT
*
13022421 AATGATTCTCATTTAAA
1 AAAGATTCTCATTTAAA
13022438 CTCAATGATT
Statistics
Matches: 117, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
21 36 0.31
23 1 0.01
24 79 0.68
25 1 0.01
ACGTcount: A:0.40, C:0.14, G:0.05, T:0.42
Consensus pattern (24 bp):
AAAGATTCTCATTTAAAACTTCTT
Found at i:13022347 original size:14 final size:13
Alignment explanation
Indices: 13022328--13022396 Score: 60
Period size: 14 Copynumber: 5.5 Consensus size: 13
13022318 TTTAAAACTT
13022328 TTTAAAGATTCTCA
1 TTTAAA-ATTCTCA
13022342 TTTAAAA--CTC-
1 TTTAAAATTCTCA
13022352 TTTAAATATTCTCA
1 TTTAAA-ATTCTCA
13022366 TTTAAAA--CTC-
1 TTTAAAATTCTCA
*
13022376 CTTAAAGATTCTCA
1 TTTAAA-ATTCTCA
13022390 TTTAAAA
1 TTTAAAA
13022397 CTAAAAGATT
Statistics
Matches: 45, Mismatches: 2, Indels: 17
0.70 0.03 0.27
Matches are distributed among these distances:
10 11 0.24
11 8 0.18
13 9 0.20
14 17 0.38
ACGTcount: A:0.39, C:0.16, G:0.03, T:0.42
Consensus pattern (13 bp):
TTTAAAATTCTCA
Found at i:13023567 original size:6 final size:7
Alignment explanation
Indices: 13023557--13023642 Score: 64
Period size: 9 Copynumber: 10.7 Consensus size: 7
13023547 TTTCTCTCAT
13023557 TTTTTCA
1 TTTTTCA
13023564 TTTTTCA
1 TTTTTCA
*
13023571 TTTGTTTACT
1 -TT-TTT-CA
13023581 TTTTTCA
1 TTTTTCA
13023588 TTTTTTCA
1 -TTTTTCA
13023596 CTTTTTTCA
1 --TTTTTCA
13023605 CTTTTTTCA
1 --TTTTTCA
13023614 CTTTTTTCA
1 --TTTTTCA
13023623 CTTTTTCA
1 -TTTTTCA
13023631 TTTTTCA
1 TTTTTCA
13023638 TTTTT
1 TTTTT
13023643 TTTGTTTCTT
Statistics
Matches: 71, Mismatches: 3, Indels: 10
0.85 0.04 0.12
Matches are distributed among these distances:
7 20 0.28
8 19 0.27
9 31 0.44
10 1 0.01
ACGTcount: A:0.12, C:0.16, G:0.01, T:0.71
Consensus pattern (7 bp):
TTTTTCA
Found at i:13023586 original size:17 final size:17
Alignment explanation
Indices: 13023540--13023643 Score: 121
Period size: 17 Copynumber: 6.2 Consensus size: 17
13023530 TTAATTTGAG
13023540 TTTTCA-TTTTCTCTCATT
1 TTTTCACTTTT-T-TCATT
13023558 TTTTCA--TTTTTCATT
1 TTTTCACTTTTTTCATT
13023573 TGTTT-ACTTTTTTCATT
1 T-TTTCACTTTTTTCATT
13023590 TTTTCACTTTTTTCACTT
1 TTTTCACTTTTTTCA-TT
*
13023608 TTTTCACTTTTTTCACT
1 TTTTCACTTTTTTCATT
13023625 TTTTCA--TTTTTCATT
1 TTTTCACTTTTTTCATT
13023640 TTTT
1 TTTT
13023644 TTGTTTCTTT
Statistics
Matches: 79, Mismatches: 2, Indels: 13
0.84 0.02 0.14
Matches are distributed among these distances:
15 19 0.24
16 7 0.09
17 30 0.38
18 23 0.29
ACGTcount: A:0.12, C:0.17, G:0.01, T:0.70
Consensus pattern (17 bp):
TTTTCACTTTTTTCATT
Found at i:13023600 original size:9 final size:8
Alignment explanation
Indices: 13023540--13023660 Score: 117
Period size: 8 Copynumber: 14.9 Consensus size: 8
13023530 TTAATTTGAG
13023540 TTTTCATT
1 TTTTCATT
13023548 TTCTCTCATT
1 TT-T-TCATT
13023558 TTTTCA-T
1 TTTTCATT
13023565 TTTTCATT
1 TTTTCATT
13023573 TGTTT-ACTT
1 T-TTTCA-TT
13023582 TTTTCATT
1 TTTTCATT
13023590 TTTTCACTT
1 TTTTCA-TT
13023599 TTTTCACTT
1 TTTTCA-TT
13023608 TTTTCACTT
1 TTTTCA-TT
*
13023617 TTTTCACT
1 TTTTCATT
13023625 TTTTCA-T
1 TTTTCATT
13023632 TTTTCATT
1 TTTTCATT
13023640 TTTT--TT
1 TTTTCATT
* *
13023646 GTTTCTTT
1 TTTTCATT
13023654 TTTTCAT
1 TTTTCAT
13023661 CCATTATTGA
Statistics
Matches: 99, Mismatches: 4, Indels: 20
0.80 0.03 0.16
Matches are distributed among these distances:
6 5 0.05
7 14 0.14
8 38 0.38
9 35 0.35
10 7 0.07
ACGTcount: A:0.11, C:0.17, G:0.02, T:0.71
Consensus pattern (8 bp):
TTTTCATT
Found at i:13024490 original size:13 final size:15
Alignment explanation
Indices: 13024462--13024495 Score: 54
Period size: 13 Copynumber: 2.4 Consensus size: 15
13024452 TTCGAGAATG
13024462 GGAATAAAAAGACAT
1 GGAATAAAAAGACAT
13024477 GGAA-AAAAAG-CAT
1 GGAATAAAAAGACAT
13024490 GGAATA
1 GGAATA
13024496 GTGGTTGGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
13 7 0.39
14 7 0.39
15 4 0.22
ACGTcount: A:0.59, C:0.06, G:0.24, T:0.12
Consensus pattern (15 bp):
GGAATAAAAAGACAT
Found at i:13026567 original size:29 final size:29
Alignment explanation
Indices: 13026519--13026582 Score: 94
Period size: 29 Copynumber: 2.2 Consensus size: 29
13026509 TACATGGATG
*
13026519 AATAC-ATATGTTTGTAATGCTAGATTAA
1 AATACAATATGTTAGTAATGCTAGATTAA
* *
13026547 ATTACAATATGTTAGTGATGCTAGATTAA
1 AATACAATATGTTAGTAATGCTAGATTAA
13026576 AATACAA
1 AATACAA
13026583 CACATAGCAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 4 0.13
29 27 0.87
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (29 bp):
AATACAATATGTTAGTAATGCTAGATTAA
Found at i:13026893 original size:140 final size:140
Alignment explanation
Indices: 13026641--13026919 Score: 452
Period size: 140 Copynumber: 2.0 Consensus size: 140
13026631 TAAAAAGTTC
* *
13026641 ACTCATATGTCCAAACTAAGGTTACATCGTAATGATGGGTAGACATGGCTTTAACCTAAGGTTGG
1 ACTCATATGTCCAAACTAAGGTTACATCGTAATGATGGGTAGACATGGCTCTAACCTAAGGTTAG
* * *
13026706 CTTCTTATGTTCTACTACATGTGGTTTGGGTTAATTCTAAAGGTTCCCAAATTATTCCTCACATC
66 CTTCTTATATTCTACTACATGTGGTTTAGGTTAACTCTAAAGGTTCCCAAATTATTCCTCACATC
13026771 ATTGTCCATT
131 ATTGTCCATT
* * *
13026781 ACTCATATGTCCTAACTATGGTTACACTC-TAATGATGGGTAGACATGGCTCTAAGCTAAGGTTA
1 ACTCATATGTCCAAACTAAGGTTACA-TCGTAATGATGGGTAGACATGGCTCTAACCTAAGGTTA
* *
13026845 GCTTCTTCTATTCTACTACATGTGGTTTAGGTTAACTCTAAAGGTTCCCAAATTGTTCCTCACAT
65 GCTTCTTATATTCTACTACATGTGGTTTAGGTTAACTCTAAAGGTTCCCAAATTATTCCTCACAT
13026910 CATTGTCCAT
130 CATTGTCCAT
13026920 CACAAACTAG
Statistics
Matches: 128, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
140 126 0.98
141 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.17, T:0.36
Consensus pattern (140 bp):
ACTCATATGTCCAAACTAAGGTTACATCGTAATGATGGGTAGACATGGCTCTAACCTAAGGTTAG
CTTCTTATATTCTACTACATGTGGTTTAGGTTAACTCTAAAGGTTCCCAAATTATTCCTCACATC
ATTGTCCATT
Found at i:13028211 original size:24 final size:26
Alignment explanation
Indices: 13028161--13028212 Score: 63
Period size: 24 Copynumber: 2.1 Consensus size: 26
13028151 ATATTGTTAA
* *
13028161 TTTTTTTACTTTTTGTTTACTCTTTC
1 TTTTTTTACTTTTTGTTGACTCATTC
*
13028187 TTTTTTTA-TTTTT-TTGATTCATTC
1 TTTTTTTACTTTTTGTTGACTCATTC
13028211 TT
1 TT
13028213 GATTTTCTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 10 0.43
25 5 0.22
26 8 0.35
ACGTcount: A:0.10, C:0.12, G:0.04, T:0.75
Consensus pattern (26 bp):
TTTTTTTACTTTTTGTTGACTCATTC
Found at i:13042686 original size:7 final size:7
Alignment explanation
Indices: 13042668--13042738 Score: 67
Period size: 7 Copynumber: 9.9 Consensus size: 7
13042658 GGAGAAAAGG
13042668 AAAGAAA
1 AAAGAAA
*
13042675 AAA-AAG
1 AAAGAAA
13042681 AAA-AAA
1 AAAGAAA
13042687 AAAGAAGA
1 AAAGAA-A
13042695 AAAGTCAAA
1 AAAG--AAA
13042704 AAA-AAA
1 AAAGAAA
13042710 GAAAGAAAA
1 -AAAG-AAA
13042719 AAAGAAA
1 AAAGAAA
13042726 AAAGAAA
1 AAAGAAA
13042733 AAAGAA
1 AAAGAA
13042739 GTGCCGACGA
Statistics
Matches: 55, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
6 13 0.24
7 24 0.44
8 9 0.16
9 7 0.13
10 2 0.04
ACGTcount: A:0.83, C:0.01, G:0.14, T:0.01
Consensus pattern (7 bp):
AAAGAAA
Found at i:13042735 original size:30 final size:30
Alignment explanation
Indices: 13042672--13042735 Score: 87
Period size: 30 Copynumber: 2.1 Consensus size: 30
13042662 AAAAGGAAAG
*
13042672 AAAAAAAAGAAAAAAAAAGAAGAAAAGTCA
1 AAAAAAAAGAAAAAAAAAGAAGAAAAGTAA
13042702 AAAAAAAAGAAAGAAAAAAAGAA-AAAAG-AA
1 AAAAAAAAG-AA-AAAAAAAGAAGAAAAGTAA
13042732 AAAA
1 AAAA
13042736 GAAGTGCCGA
Statistics
Matches: 31, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
30 14 0.45
31 7 0.23
32 10 0.32
ACGTcount: A:0.84, C:0.02, G:0.12, T:0.02
Consensus pattern (30 bp):
AAAAAAAAGAAAAAAAAAGAAGAAAAGTAA
Found at i:13048057 original size:158 final size:157
Alignment explanation
Indices: 13047769--13048181 Score: 487
Period size: 158 Copynumber: 2.6 Consensus size: 157
13047759 TGGTTGGTCA
* * * *
13047769 AGACTAGAAATGCACTACGTATGCCTAAGTCAACCTACTAAACAAGCGTGCAGGCACTAAGCCAG
1 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTA-TAAACAAGCGTGCAGGCACTAAGGCAG
* * *
13047834 CCAGAGAGGCAGAATACGTAAGCT-AGGGATCAACCCGATCCCCTTTCATGTGCGGTAGATCCTG
65 CCAGAGAGGTAGAATGCGTAAGCTGA-GGATCGACCCGATCCCCTTTCATGTGCGGTAGATCCTG
13047898 CTATAGGTCCCTCGATCCGACTGGGGCTT
129 CTATAGGTCCCTCGATCCGACTGGGGCTT
* * * *
13047927 AGACTAGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACAAGCGAGCGGGCACTAAGGCAG
1 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTAT-AAACAAGCGTGCAGGCACTAAGGCAG
* * *
13047992 CCAGAGAGGTAGAATGCGGAAGCTGAGGATCGACCC-AGTCCCC-TTC-TGTGAGCTGTGGATCC
65 CCAGAGAGGTAGAATGCGTAAGCTGAGGATCGACCCGA-TCCCCTTTCATGT--GCGGTAGATCC
* * *
13048054 TGCTGTAGGTCTCTCGATCTGACTGGGGCTT
127 TGCTATAGGTCCCTCGATCCGACTGGGGCTT
* * * *
13048085 AGACTAGGAATGAACTCTGTATGCCTCAGTCAACCTACAAA-ATGAGCGTGTAGGCACTAA-GCA
1 AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTATAAACA--AGCGTGCAGGCACTAAGGCA
* * *
13048148 TGCTAGAGAGGTATAATGCGTAAGCTGAGCATCG
64 -GCCAGAGAGGTAGAATGCGTAAGCTGAGGATCG
13048182 GTCGGGTCCC
Statistics
Matches: 218, Mismatches: 29, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
156 4 0.02
157 11 0.05
158 202 0.93
159 1 0.00
ACGTcount: A:0.29, C:0.24, G:0.26, T:0.21
Consensus pattern (157 bp):
AGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTATAAACAAGCGTGCAGGCACTAAGGCAGC
CAGAGAGGTAGAATGCGTAAGCTGAGGATCGACCCGATCCCCTTTCATGTGCGGTAGATCCTGCT
ATAGGTCCCTCGATCCGACTGGGGCTT
Found at i:13049397 original size:149 final size:149
Alignment explanation
Indices: 13049121--13049423 Score: 394
Period size: 149 Copynumber: 2.0 Consensus size: 149
13049111 TCACCATGGC
* * * *
13049121 CGGGTAGTAGGTGGGTTCGAGGATATCTTTATATTTCTACATTGCCAATGCCATTTTTGTGGCCC
1 CGGGTAGTAGGTGGGTTCGAGGACATCTTCATATTTCTACAGTGCCAATGCCATTTTTATGGCCC
* * * *
13049186 ATGAATTCATATGAGCACTCCCCAATGCCCGCACACCACGCGTGGGTGTCTTGTGCCCAGGCCGA
66 ATGAATTCATATGAGCACTCCCCAATGCCCGCACACCACGCGCGAGTGTCTTGAGCCCAGGCCAA
* **
13049251 GCACCAATGGGTGCCACGAT
131 GCACC-ATGCGCACCACGAT
* * *
13049271 CGGGTGGTAGGTGGGTT-TAGGCACATCTTCATATTTCTACCGTGCCAATGCCA-TTTTATGGCC
1 CGGGTAGTAGGTGGGTTCGAGG-ACATCTTCATATTTCTACAGTGCCAATGCCATTTTTATGGCC
** * * * *
13049334 TGTGAATTCATATGAGCACTTCCCAGTGCCCGCACACCATGCGCGAGTGTCTTGAGCCTAGGCCA
65 CATGAATTCATATGAGCACTCCCCAATGCCCGCACACCACGCGCGAGTGTCTTGAGCCCAGGCCA
13049399 AGCACCATGCGCACCACGAT
130 AGCACCATGCGCACCACGAT
13049419 CGGGT
1 CGGGT
13049424 CATATGAGCA
Statistics
Matches: 132, Mismatches: 20, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
148 16 0.12
149 73 0.55
150 43 0.33
ACGTcount: A:0.20, C:0.27, G:0.26, T:0.26
Consensus pattern (149 bp):
CGGGTAGTAGGTGGGTTCGAGGACATCTTCATATTTCTACAGTGCCAATGCCATTTTTATGGCCC
ATGAATTCATATGAGCACTCCCCAATGCCCGCACACCACGCGCGAGTGTCTTGAGCCCAGGCCAA
GCACCATGCGCACCACGAT
Found at i:13049480 original size:82 final size:82
Alignment explanation
Indices: 13049341--13049505 Score: 201
Period size: 82 Copynumber: 2.0 Consensus size: 82
13049331 GCCTGTGAAT
** * **
13049341 TCATATGAGCACTTCCCAGTGCCCGCACACCATGCGCGAGTGTCTTGAGCCTAGGCCAAGCACCA
1 TCATATGAGCACTTCCCAGCACCCGCACACCATGCGCGAGTGTCTTGAGCCCAGGCCAAAAACCA
*
13049406 TGCGCACCACGATCGGG
66 TGCGCACCACAATCGGG
*
13049423 TCATATGAGCAC-TCCCTAGCACCCGCACACCACT-CGC-AGGTGTCTTGAGCCCGGGCCAAAAA
1 TCATATGAGCACTTCCC-AGCACCCGCACACCA-TGCGCGA-GTGTCTTGAGCCCAGGCCAAAAA
* *
13049485 CCTTGCGCGCCACAATCGGG
63 CCATGCGCACCACAATCGGG
13049505 T
1 T
13049506 GGTAGGTGGG
Statistics
Matches: 71, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
81 5 0.07
82 65 0.92
83 1 0.01
ACGTcount: A:0.22, C:0.36, G:0.24, T:0.17
Consensus pattern (82 bp):
TCATATGAGCACTTCCCAGCACCCGCACACCATGCGCGAGTGTCTTGAGCCCAGGCCAAAAACCA
TGCGCACCACAATCGGG
Found at i:13050525 original size:45 final size:45
Alignment explanation
Indices: 13050475--13050761 Score: 182
Period size: 45 Copynumber: 6.4 Consensus size: 45
13050465 AGTGCACGTG
* * * *
13050475 GTTGCCTCGAACACCATCGGTACATGTTGGGCCTTGGTACGGGCA
1 GTTGCCTCGAACACCATCGGTACAAGTTGGCCCTTGGTGCAGGCA
* * * * * *
13050520 GTTGCCTCGAGCACCATTGATATAAGTCGGCCCTTGGTGCAGGTA
1 GTTGCCTCGAACACCATCGGTACAAGTTGGCCCTTGGTGCAGGCA
* * * * * *
13050565 CTTACCTCGACCACCATCGGTAGAAGATGGCCCTTGGTGCAGACA
1 GTTGCCTCGAACACCATCGGTACAAGTTGGCCCTTGGTGCAGGCA
* ** * ** * * * *
13050610 ATTGTATCAAACACCATTAGCATAAGCTGGGCCTTGGTGCAGGC-
1 GTTGCCTCGAACACCATCGGTACAAGTTGGCCCTTGGTGCAGGCA
* * * * *
13050654 GTTTACCTCGAACACCATCGGCACATGTTGGCCCTCGGTGCGGGCA
1 G-TTGCCTCGAACACCATCGGTACAAGTTGGCCCTTGGTGCAGGCA
* * **** *
13050700 -TATGCCTCGACCACCATCGATACAAGCCAACCCTTGGTGCAGACA
1 GT-TGCCTCGAACACCATCGGTACAAGTTGGCCCTTGGTGCAGGCA
* *
13050745 CTTGCCTCGATCACCAT
1 GTTGCCTCGAACACCAT
13050762 TAGCACGTGC
Statistics
Matches: 179, Mismatches: 59, Indels: 8
0.73 0.24 0.03
Matches are distributed among these distances:
44 1 0.01
45 177 0.99
46 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.25, T:0.23
Consensus pattern (45 bp):
GTTGCCTCGAACACCATCGGTACAAGTTGGCCCTTGGTGCAGGCA
Found at i:13050600 original size:90 final size:88
Alignment explanation
Indices: 13050479--13050761 Score: 253
Period size: 90 Copynumber: 3.1 Consensus size: 88
13050469 CACGTGGTTG
* * *
13050479 CCTCGAACACCATCGGTACATGTTGGGCCTTGGTACGGGCAGTTGCCTCGAGCACCATTGATATA
1 CCTCGAACACCATCGGTACATGTTGGCCCTTGGTGCGGGCA-TTGCCTCGAACACCATTGATATA
*
13050544 AGTCGGCCCTTGGTGCAGGTACTTA
65 AG-CGGCCCTTGGTGCAGGCACTTA
* * * * * * ** * *
13050569 CCTCGACCACCATCGGTAGAAGATGGCCCTTGGTGCAGACAATTGTATCAAACACCATT-AGCAT
1 CCTCGAACACCATCGGTACATGTTGGCCCTTGGTGCGGGC-ATTGCCTCGAACACCATTGA-TAT
* **
13050633 AAGCTGGGCCTTGGTGCAGGCGTTTA
64 AAGC-GGCCCTTGGTGCAGGCACTTA
* * * * *
13050659 CCTCGAACACCATCGGCACATGTTGGCCCTCGGTGCGGGCATATGCCTCGACCACCATCGATACA
1 CCTCGAACACCATCGGTACATGTTGGCCCTTGGTGCGGGCAT-TGCCTCGAACACCATTGATATA
** * *
13050724 AGCCAACCCTTGGTGCAGACACTTG
65 AG-CGGCCCTTGGTGCAGGCACTTA
*
13050749 CCTCGATCACCAT
1 CCTCGAACACCAT
13050762 TAGCACGTGC
Statistics
Matches: 147, Mismatches: 40, Indels: 12
0.74 0.20 0.06
Matches are distributed among these distances:
89 4 0.03
90 140 0.95
91 3 0.02
ACGTcount: A:0.23, C:0.30, G:0.25, T:0.23
Consensus pattern (88 bp):
CCTCGAACACCATCGGTACATGTTGGCCCTTGGTGCGGGCATTGCCTCGAACACCATTGATATAA
GCGGCCCTTGGTGCAGGCACTTA
Found at i:13050870 original size:45 final size:45
Alignment explanation
Indices: 13050815--13050924 Score: 148
Period size: 45 Copynumber: 2.4 Consensus size: 45
13050805 TGGTGTGGGT
* * *
13050815 GGTTACCTCGAACACCATCGGTAGAAGATGGCCTTTGGTACGGGC
1 GGTTGCCTCGAACACCATCGGTAGAAGATGGCCCTTGGTACAGGC
* *
13050860 GGTTGCCTCGATCACCATCGGTAGAAGATGGCCCTTGGTGCAGGC
1 GGTTGCCTCGAACACCATCGGTAGAAGATGGCCCTTGGTACAGGC
* * *
13050905 GATTGCCTTGACCACCATCG
1 GGTTGCCTCGAACACCATCG
13050925 ACACAAGCAG
Statistics
Matches: 57, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 57 1.00
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (45 bp):
GGTTGCCTCGAACACCATCGGTAGAAGATGGCCCTTGGTACAGGC
Found at i:13050956 original size:206 final size:207
Alignment explanation
Indices: 13050659--13051039 Score: 507
Period size: 206 Copynumber: 1.8 Consensus size: 207
13050649 CAGGCGTTTA
* * * *
13050659 CCTCGAACACCATCGGCACATGTTGGCCCTCGGTGCGGGCATATGCCTCGACCACCATCGATACA
1 CCTCGAACACCATCGGCACAAGATGGCCCTCGGTGCAGGCATATGCCTCGACCACCATCGACACA
* *
13050724 AGCCAACCCTTGGTGCAGACACTTGCCTCGATCACCATTAGCACGTGCCATGCCTCAATTAGCAT
66 AGCCAACCCTTGGTGCAGACACTTGCCTCGATCACCATCAGCACGTGCCATGCCTCAATCAGCAT
* *
13050789 -TGAAAAAAATGGCCCCTGGTGTGGGTGGTTACCTCGAACACCATCGGTAGAAGATGGCCTTTGG
131 CGGAAAAAAATGGCCCCTGGTGTAGGTGGTTACCTCGAACACCATCGGTAGAAGATGGCCTTTGG
13050853 TACGGGCGGTTG
196 TACGGGCGGTTG
* * * * *
13050865 CCTCGATCACCATCGGTAGAAGATGGCCCTTGGTGCAGGCGAT-TGCCTTGACCACCATCGACAC
1 CCTCGAACACCATCGGCACAAGATGGCCCTCGGTGCAGGC-ATATGCCTCGACCACCATCGACAC
* ** * * * * *
13050929 AAG-CAGGCCCTTGGTGTGGGCACTTGCCTTGATCATCGTCAGCACGTGCCATGCCTCGATCAGC
65 AAGCCA-ACCCTTGGTGCAGACACTTGCCTCGATCACCATCAGCACGTGCCATGCCTCAATCAGC
* * *
13050993 ATCGGTAGAAGATGGCCCCTGGTGTAGGTGGTTACCTCGAACACCAT
129 ATCGGAAAAAAATGGCCCCTGGTGTAGGTGGTTACCTCGAACACCAT
13051040 TAACACGTGC
Statistics
Matches: 148, Mismatches: 24, Indels: 5
0.84 0.14 0.03
Matches are distributed among these distances:
205 2 0.01
206 105 0.71
207 41 0.28
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.22
Consensus pattern (207 bp):
CCTCGAACACCATCGGCACAAGATGGCCCTCGGTGCAGGCATATGCCTCGACCACCATCGACACA
AGCCAACCCTTGGTGCAGACACTTGCCTCGATCACCATCAGCACGTGCCATGCCTCAATCAGCAT
CGGAAAAAAATGGCCCCTGGTGTAGGTGGTTACCTCGAACACCATCGGTAGAAGATGGCCTTTGG
TACGGGCGGTTG
Found at i:13051074 original size:117 final size:117
Alignment explanation
Indices: 13050863--13051074 Score: 262
Period size: 117 Copynumber: 1.8 Consensus size: 117
13050853 TACGGGCGGT
* * * * *
13050863 TGCCTCGATCACCATCGGTAGAAGATGGCCCTTGGTGCAGGCGATTGCCTTGACCACCATCGACA
1 TGCCTCGATCACCATCGGTAGAAGATGGCCCCTGGTGCAGGCGATTACCTCGAACACCATCAACA
* *
13050928 CAAGCAGGCCCTTGGTGTGGGCACTTGCCTTGATCATCGTCAGCACGTGCCA
66 CAAGCAGGCCCTTAGTGTGGGCACATGCCTTGATCATCGTCAGCACGTGCCA
* * * * *
13050980 TGCCTCGATCAGCATCGGTAGAAGATGGCCCCTGGTGTAGGTGGTTACCTCGAACACCATTAACA
1 TGCCTCGATCACCATCGGTAGAAGATGGCCCCTGGTGCAGGCGATTACCTCGAACACCATCAACA
** * * * *
13051045 CGTGCTGGGCCTTAGTGTGGGTAGATGCCT
66 CAAGCAGGCCCTTAGTGTGGGCACATGCCT
13051075 CGACCACCAT
Statistics
Matches: 77, Mismatches: 18, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
117 77 1.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.24
Consensus pattern (117 bp):
TGCCTCGATCACCATCGGTAGAAGATGGCCCCTGGTGCAGGCGATTACCTCGAACACCATCAACA
CAAGCAGGCCCTTAGTGTGGGCACATGCCTTGATCATCGTCAGCACGTGCCA
Found at i:13055825 original size:45 final size:45
Alignment explanation
Indices: 13055742--13055827 Score: 113
Period size: 45 Copynumber: 1.9 Consensus size: 45
13055732 CGTGACACAT
* *
13055742 GCACATGCCTTGACCACCATCGAGAGATGTTGGTCCTTGGTCTCG
1 GCACATGCCTTGACCACCATCGAGAGATGCTGGACCTTGGTCTCG
*
13055787 GCACATG-CTTCGACCACCATCG-GCGTATGCTGGACCTTGGT
1 GCACATGCCTT-GACCACCATCGAGAG-ATGCTGGACCTTGGT
13055828 GTGGGCAGTT
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
44 5 0.14
45 31 0.86
ACGTcount: A:0.17, C:0.30, G:0.27, T:0.26
Consensus pattern (45 bp):
GCACATGCCTTGACCACCATCGAGAGATGCTGGACCTTGGTCTCG
Found at i:13056199 original size:150 final size:148
Alignment explanation
Indices: 13055927--13056291 Score: 396
Period size: 149 Copynumber: 2.4 Consensus size: 148
13055917 CAATCGGGTA
* * * * * *
13055927 GTAGGTGGGTTCTAGG-ATATCTTCTTGTTTCTA-CAGTGCCAAAGCCATTTTTGTGGTCC-ATG
1 GTAGGTGGGTT-TAGGCACATCTTCATATTTCTACCA-TGCCAATGCCATTTTTATGG-CCTGTG
* * *
13055989 AATTCATATGAGCGCTCCCCAACACCCGCACACCACGCGTAGGTGTCCTTAGCCCTGACCGAGCA
63 AATTCATATGAGCACTCCCCAACACCCGCACACCACGCG-AGGTGTCCTAAGCCCGGACCGAGCA
* *
13056054 CCAATGCGCACCACGATCAAGTG
127 CC-ATGCACACCACAATCAAGTG
*
13056077 GTAGGTGGGTTTAGGCACATCTTCATATTTTTACCATGCCAATGCCATTTTTATGGCCTGTGAAT
1 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCCTGTGAAT
* ** * *
13056142 TCATATGAGCACTCTCCAATTCCCGTACACCATGACG-GGTGTCCTAAGCCCCGGACCGAGCACC
66 TCATATGAGCACTCCCCAACACCCGCACACCACG-CGAGGTGTCCTAAG-CCCGGACCGAGCACC
* **
13056206 ATGCACGCCACAATCGTGTG
129 ATGCACACCACAATCAAGTG
* * ** * * *
13056226 GTAGGTGGGTTTATGCACATCTTCATATTTCTGCTGTACCAATGCCATTTTTATGGCTTGTAAAT
1 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCCTGTGAAT
13056291 T
66 T
13056292 AATACAATGG
Statistics
Matches: 182, Mismatches: 28, Indels: 11
0.82 0.13 0.05
Matches are distributed among these distances:
149 89 0.49
150 89 0.49
151 4 0.02
ACGTcount: A:0.22, C:0.27, G:0.22, T:0.29
Consensus pattern (148 bp):
GTAGGTGGGTTTAGGCACATCTTCATATTTCTACCATGCCAATGCCATTTTTATGGCCTGTGAAT
TCATATGAGCACTCCCCAACACCCGCACACCACGCGAGGTGTCCTAAGCCCGGACCGAGCACCAT
GCACACCACAATCAAGTG
Found at i:13056938 original size:45 final size:45
Alignment explanation
Indices: 13056899--13056994 Score: 131
Period size: 45 Copynumber: 2.1 Consensus size: 45
13056889 GACCATCGTT
* * *
13056899 GGCACAAG-TTACCCTTTGGTACAGGCACTTGCCTTGACCACCATC
1 GGCACAAGCTGACCC-TTGGAACAGGCACTTGCCTCGACCACCATC
*
13056944 GGCACAAGCTGGCCCTTGGAACAGGCACTTGCCTCGACCACCATC
1 GGCACAAGCTGACCCTTGGAACAGGCACTTGCCTCGACCACCATC
*
13056989 GACACA
1 GGCACA
13056995 TGCATGCCTC
Statistics
Matches: 45, Mismatches: 5, Indels: 2
0.87 0.10 0.04
Matches are distributed among these distances:
45 41 0.91
46 4 0.09
ACGTcount: A:0.24, C:0.35, G:0.22, T:0.19
Consensus pattern (45 bp):
GGCACAAGCTGACCCTTGGAACAGGCACTTGCCTCGACCACCATC
Found at i:13057266 original size:162 final size:160
Alignment explanation
Indices: 13056922--13057266 Score: 392
Period size: 162 Copynumber: 2.1 Consensus size: 160
13056912 CTTTGGTACA
* * *
13056922 GGCACTTGCCTTGACCACCATCGGCACAAGCTGGCCCTTGGAACAGGCACTTGCCTCGACCACCA
1 GGCACTTGCCTCGACCACCATCAGCACAAGCTGGCCATTGGAACAGGCACTTGCCTCGACCACCA
* * * * *
13056987 TCGACACATGCATGCCTCGATGAGCTTCCACAGAAGATGGCCCTTTGTGCAGGTGGTTGCCTCGA
66 TCGACACATGCATGCCTCAATCAACTTCCACAGAAGATGGCCCTTGGTGCA-GTGGTTGCCTCAA
* ** *
13057052 GCACCATCGGTACGTGTTGGGCCTTGGTGCG
130 ACACCATCGACACATGTTGGGCCTTGGTGCG
* * * * *
13057083 GGCACATGCCTCGACCACCATCATCACAAGCTGGCCATTGGAACGGGCACTTGCTTGGACCACCA
1 GGCACTTGCCTCGACCACCATCAGCACAAGCTGGCCATTGGAACAGGCACTTGCCTCGACCACCA
* *
13057148 TC-AGCACATGCCATGCCTCAATCAACATT-GATAGAAGATGGTCCC-TGGTGC-GTGCAGTTGC
66 TCGA-CACATG-CATGCCTCAATCAAC-TTCCACAGAAGATGG-CCCTTGGTGCAGTG--GTTGC
*
13057209 CTCAAACACTATCGACACATGTTGGGCCTTGGTGCG
125 CTCAAACACCATCGACACATGTTGGGCCTTGGTGCG
** *
13057245 GGCGGTTGCCTCGAGCACCATC
1 GGCACTTGCCTCGACCACCATC
13057267 GACATAAGCC
Statistics
Matches: 154, Mismatches: 24, Indels: 11
0.81 0.13 0.06
Matches are distributed among these distances:
160 4 0.03
161 65 0.42
162 80 0.52
163 5 0.03
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.21
Consensus pattern (160 bp):
GGCACTTGCCTCGACCACCATCAGCACAAGCTGGCCATTGGAACAGGCACTTGCCTCGACCACCA
TCGACACATGCATGCCTCAATCAACTTCCACAGAAGATGGCCCTTGGTGCAGTGGTTGCCTCAAA
CACCATCGACACATGTTGGGCCTTGGTGCG
Found at i:13057354 original size:45 final size:45
Alignment explanation
Indices: 13057303--13057417 Score: 124
Period size: 45 Copynumber: 2.6 Consensus size: 45
13057293 ACTTGCTGTG
* * *
13057303 ATCACCATTGGTAGAAGATGGCCCTTGGTGCAGGTGGTTACGTTGA
1 ATCACCATTGGTAGAAGATGGCCCTTGGTGCAAGCGGTTACCTT-A
* * * * * *
13057349 A-CACCATCGGCACATGCTGGGCCTTGGTGCAAGCGGTTACCTTA
1 ATCACCATTGGTAGAAGATGGCCCTTGGTGCAAGCGGTTACCTTA
*
13057393 ATCACCATTGGTAGAAGATAGCCCT
1 ATCACCATTGGTAGAAGATGGCCCT
13057418 CGGTAACAGT
Statistics
Matches: 52, Mismatches: 16, Indels: 3
0.73 0.23 0.04
Matches are distributed among these distances:
44 2 0.04
45 49 0.94
46 1 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (45 bp):
ATCACCATTGGTAGAAGATGGCCCTTGGTGCAAGCGGTTACCTTA
Found at i:13057401 original size:90 final size:90
Alignment explanation
Indices: 13057303--13057466 Score: 222
Period size: 90 Copynumber: 1.8 Consensus size: 90
13057293 ACTTGCTGTG
* * * * ** *
13057303 ATCACCATTGGTAGAAGATGGCCCTTGGT-GCAGGTGGTTACGTTGAACACCATCGGCACATGCT
1 ATCACCATTGGTAGAAGATAGCCCTCGGTAACA-GTGGTTACCTCCAACACCATCAGCACATGCT
13057367 GGGCCTTGGTGCAAGCGGTTACCTTA
65 GGGCCTTGGTGCAAGCGGTTACCTTA
* * *
13057393 ATCACCATTGGTAGAAGATAGCCCTCGGTAACAGTGGTTGCCTCCAAGACCATTAGCACATGCTG
1 ATCACCATTGGTAGAAGATAGCCCTCGGTAACAGTGGTTACCTCCAACACCATCAGCACATGCTG
13057458 GGCCTTGGT
66 GGCCTTGGT
13057467 ACGGGCACAT
Statistics
Matches: 63, Mismatches: 10, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
90 61 0.97
91 2 0.03
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (90 bp):
ATCACCATTGGTAGAAGATAGCCCTCGGTAACAGTGGTTACCTCCAACACCATCAGCACATGCTG
GGCCTTGGTGCAAGCGGTTACCTTA
Found at i:13070652 original size:6 final size:6
Alignment explanation
Indices: 13070636--13070669 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
13070626 TTTCATTCAT
*
13070636 CCCTCCC CCCTCC CCCTCC CCCTCC CCTTCC CCC
1 CCCT-CC CCCTCC CCCTCC CCCTCC CCCTCC CCC
13070670 GTCGACCTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
6 21 0.84
7 4 0.16
ACGTcount: A:0.00, C:0.82, G:0.00, T:0.18
Consensus pattern (6 bp):
CCCTCC
Found at i:13073032 original size:45 final size:45
Alignment explanation
Indices: 13072982--13073081 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 45
13072972 AGATGGCCCC
** *
13072982 TGGTACGGGCGGTTGCATTGAACACCATCAACACATGCTGGGCTT
1 TGGTACGGGCGGTTGCATCAAACACCATCAACACATGCTGGGCCT
** * **
13073027 TGGTACGGATGGTTGCCTCAAACACCATCAGTACATGCTGGGCCT
1 TGGTACGGGCGGTTGCATCAAACACCATCAACACATGCTGGGCCT
13073072 TGGTACGGGC
1 TGGTACGGGC
13073082 ACATGCCTCA
Statistics
Matches: 45, Mismatches: 10, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.21, C:0.25, G:0.30, T:0.24
Consensus pattern (45 bp):
TGGTACGGGCGGTTGCATCAAACACCATCAACACATGCTGGGCCT
Found at i:13073083 original size:135 final size:134
Alignment explanation
Indices: 13072835--13073099 Score: 296
Period size: 135 Copynumber: 2.0 Consensus size: 134
13072825 TAGCATCGAC
* * * * ** **
13072835 AGAAGATGGTCCCTGGTACGTGCGGTTACCTCGAACACTATGGCACATGCTAGGCCTTGGTGTGG
1 AGAAGATGGCCCCTGGTACGGGCGGTTACATCGAACACCATAACACATGCTAGGCCTTGGTACGG
* * * * * * * *
13072900 GTGGTTGCTTCGAGCACCATCGGCACAAGCTGACCCTTGGTATAGGCACTTGCCTCGACCACCAT
66 ATGGTTGCCTCAAACACCATCAGCACAAGCTGACCCTTGGTACAGGCACATGCCTCAACCACCAT
13072965 TGGT
131 TGGT
* * * *
13072969 AGAAGATGGCCCCTGGTACGGGCGGTTGCATTGAACACCATCAACACATGCTGGGCTTTGGTACG
1 AGAAGATGGCCCCTGGTACGGGCGGTTACATCGAACACCAT-AACACATGCTAGGCCTTGGTACG
* * ** *
13073034 GATGGTTGCCTCAAACACCATCAGTACATGCTGGGCCTTGGTACGGGCACATGCCTCAACCACCA
65 GATGGTTGCCTCAAACACCATCAGCACAAGCTGACCCTTGGTACAGGCACATGCCTCAACCACCA
13073099 T
130 T
13073100 CAGCACAAGC
Statistics
Matches: 105, Mismatches: 25, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
134 35 0.33
135 70 0.67
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (134 bp):
AGAAGATGGCCCCTGGTACGGGCGGTTACATCGAACACCATAACACATGCTAGGCCTTGGTACGG
ATGGTTGCCTCAAACACCATCAGCACAAGCTGACCCTTGGTACAGGCACATGCCTCAACCACCAT
TGGT
Found at i:13073089 original size:45 final size:45
Alignment explanation
Indices: 13073002--13073106 Score: 129
Period size: 45 Copynumber: 2.3 Consensus size: 45
13072992 GGTTGCATTG
* * ****
13073002 AACACCATCAACACATGCTGGGCTTTGGTACGGATGGTTGCCTCA
1 AACACCATCAGCACATGCTGGGCCTTGGTACGGACACATGCCTCA
* *
13073047 AACACCATCAGTACATGCTGGGCCTTGGTACGGGCACATGCCTCA
1 AACACCATCAGCACATGCTGGGCCTTGGTACGGACACATGCCTCA
*
13073092 ACCACCATCAGCACA
1 AACACCATCAGCACA
13073107 AGCCGACCCT
Statistics
Matches: 50, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.27, C:0.31, G:0.22, T:0.20
Consensus pattern (45 bp):
AACACCATCAGCACATGCTGGGCCTTGGTACGGACACATGCCTCA
Found at i:13084575 original size:148 final size:149
Alignment explanation
Indices: 13084239--13084593 Score: 412
Period size: 148 Copynumber: 2.4 Consensus size: 149
13084229 TGACCCAACA
* * * * ** * *
13084239 GTAGGTGGGTTCAGGGATATCTTCATGTTTCTGTTGTGCCAAAGCCATTTTTGTGGTCCATGAAC
1 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGG-CCATGAAC
* * * *
13084304 TCATATGAGCGCTCCCCAATGCCCGCGCACCATGCACGGGTGTCCTGAGCTCGGATGGAGCACCA
65 TCATATGAGCACTCCCCAATGCCCGCACACCATGCACGGGTGTCCTGAGCCCGGATGAAGCACCA
*
13084369 ATGAGTGCCACGACCTGGTG
130 ATGAGCGCCACGACCTGGTG
* * *
13084389 GTAGGTGGGTTTACGCACATCTTCATATTTCTATCATGCCAATGCCATTTTTATGGCCTATGAAT
1 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGCC-ATGAAC
* * ** *
13084454 TCATATGAGCACT-CCCAGTGCCCGTACACCATGCGTGGGTGTCCTGAGCCCGAGCT-AAGCACC
65 TCATATGAGCACTCCCCAATGCCCGCACACCATGCACGGGTGTCCTGAGCCCG-GATGAAGCACC
* * *
13084517 -ATGTGCGCTACGATC-GAGTG
129 AATGAGCGCCACGACCTG-GTG
* *
13084537 GTAGGTGGGTTTAGGCACATCTTTATATTTCTGCCATGCCAATGCCATTTTTATGGC
1 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGC
13084594 TTGTAAATTC
Statistics
Matches: 174, Mismatches: 28, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
147 1 0.01
148 67 0.39
149 41 0.24
150 65 0.37
ACGTcount: A:0.20, C:0.25, G:0.26, T:0.29
Consensus pattern (149 bp):
GTAGGTGGGTTTAGGCACATCTTCATATTTCTGTCATGCCAATGCCATTTTTATGGCCATGAACT
CATATGAGCACTCCCCAATGCCCGCACACCATGCACGGGTGTCCTGAGCCCGGATGAAGCACCAA
TGAGCGCCACGACCTGGTG
Found at i:13085548 original size:162 final size:161
Alignment explanation
Indices: 13085208--13085584 Score: 405
Period size: 162 Copynumber: 2.3 Consensus size: 161
13085198 ACTTACCTTG
* *
13085208 ACCACCATCGGCACAAGCTGGCCCTCGGAACAGGCACTTGCCTCGACCACCATCAACACATGCAT
1 ACCACCATCGGCACAAGCTGGCCCTTGGTACAGGCACTTGCCTCGACCACCATCAACACATGCAT
* * * * * * * * * *
13085273 GCCATGATGAGCATTGGTAAAAGATGGCCCTTGGTGTGGGCGGTTGCCTCGAGCACTATCGGCAC
66 GCCATGATCAACATCGGTAAAAGATGGCCCATGGTGCGGGCGATTGCCTCAAACACCATCGACAC
* *
13085338 ATGTTGGGCCTTGGTGAGGGCACATGCCTCG
131 ATGCTGGGCCTTGGTGAGGGCACATGCCTCA
* * * * * * ** **
13085369 ACCACTATTGTCACAAGCTAGCCATTGGTACAGGCACTTGCCTAGACCACCATTGACATGTGCCA
1 ACCACCATCGGCACAAGCTGGCCCTTGGTACAGGCACTTGCCTCGACCACCATCAACACATG-CA
* * * *
13085434 TGCC-TTATTCAACATCGGTAGAAGATGGTCCATGGTGCGTGCGATTGCCTCAAACACCATCGAC
65 TGCCATGA-TCAACATCGGTAAAAGATGGCCCATGGTGCGGGCGATTGCCTCAAACACCATCGAC
* *** *
13085498 ACATGCTGGGCCTTGGTGCGGGCGGTTTCCTCA
129 ACATGCTGGGCCTTGGTGAGGGCACATGCCTCA
* * *
13085531 AGCACCATCGGCACAAGCTGGCCCTTGGTGCGGGCACTTGCCTCGACCACCATC
1 ACCACCATCGGCACAAGCTGGCCCTTGGTACAGGCACTTGCCTCGACCACCATC
13085585 GATAGAAGAT
Statistics
Matches: 171, Mismatches: 43, Indels: 3
0.79 0.20 0.01
Matches are distributed among these distances:
161 52 0.30
162 119 0.70
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.21
Consensus pattern (161 bp):
ACCACCATCGGCACAAGCTGGCCCTTGGTACAGGCACTTGCCTCGACCACCATCAACACATGCAT
GCCATGATCAACATCGGTAAAAGATGGCCCATGGTGCGGGCGATTGCCTCAAACACCATCGACAC
ATGCTGGGCCTTGGTGAGGGCACATGCCTCA
Found at i:13085602 original size:90 final size:90
Alignment explanation
Indices: 13085508--13085674 Score: 248
Period size: 90 Copynumber: 1.9 Consensus size: 90
13085498 ACATGCTGGG
* *
13085508 CCTTGGTGCGGGCGGTTTCCTC-AAGCACCATCGGCACAAGCT-GGCCCTTGGTGCGGGCACTTG
1 CCTTGGTGCGGGCGGTTGCATCGAA-CACCATCGGCACAAGCTAGG-CCTTGGTGCGGGCACTTG
13085571 CCTCGACCACCATCGATAGAAGATGGC
64 CCTCGACCACCATCGATAGAAGATGGC
* *
13085598 CCTTGGTGTGGGCGGTTGCATCGAACACCATCGGCACATGCTAGGCCTTGGTGCGGGCACTTGCC
1 CCTTGGTGCGGGCGGTTGCATCGAACACCATCGGCACAAGCTAGGCCTTGGTGCGGGCACTTGCC
* *
13085663 TTGATCACCATC
66 TCGACCACCATC
13085675 AGCACGTGCT
Statistics
Matches: 69, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
90 65 0.94
91 4 0.06
ACGTcount: A:0.17, C:0.31, G:0.30, T:0.22
Consensus pattern (90 bp):
CCTTGGTGCGGGCGGTTGCATCGAACACCATCGGCACAAGCTAGGCCTTGGTGCGGGCACTTGCC
TCGACCACCATCGATAGAAGATGGC
Found at i:13085672 original size:45 final size:45
Alignment explanation
Indices: 13085478--13085684 Score: 193
Period size: 45 Copynumber: 4.6 Consensus size: 45
13085468 GTGCGTGCGA
* * * **
13085478 TTGCCTCAAACACCATCGACACATGCTGGGCCTTGGTGCGGGCGG
1 TTGCCTCGAACACCATCGGCACATGCTGGCCCTTGGTGCGGGCAC
* *
13085523 TTTCCTC-AAGCACCATCGGCACAAGCTGGCCCTTGGTGCGGGCAC
1 TTGCCTCGAA-CACCATCGGCACATGCTGGCCCTTGGTGCGGGCAC
* ** * * * * **
13085568 TTGCCTCGACCACCATCGATAGAAGATGGCCCTTGGTGTGGGCGG
1 TTGCCTCGAACACCATCGGCACATGCTGGCCCTTGGTGCGGGCAC
*
13085613 TTGCATCGAACACCATCGGCACATGCTAGG-CCTTGGTGCGGGCAC
1 TTGCCTCGAACACCATCGGCACATGCT-GGCCCTTGGTGCGGGCAC
* * * *
13085658 TTGCCTTGATCACCATCAGCACGTGCT
1 TTGCCTCGAACACCATCGGCACATGCT
13085685 TCGATAACCG
Statistics
Matches: 129, Mismatches: 30, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
44 2 0.02
45 124 0.96
46 3 0.02
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.22
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGGCACATGCTGGCCCTTGGTGCGGGCAC
Found at i:13091929 original size:149 final size:149
Alignment explanation
Indices: 13091639--13091942 Score: 378
Period size: 149 Copynumber: 2.0 Consensus size: 149
13091629 TACCAATTGA
* * * * * *
13091639 ATGGTCCATGAATTCATATGAGCTCTCCCCAACGCCCGCGCACCATGAACAGGTGTCCTGAGCCC
1 ATGG-CCATGAATTCATATGAGCACTCCCCAACACCCACACACCAAGAACAGGTGTCCTAAGCCC
* * * * * * *
13091704 GGGCTGAGCACCAATGAGTGCCACGACTGGGTGGTAGGTGGGTTTAGACACATCTTTATATTTTT
65 GAGCCGAGCACCAATGAGCGCCACGACTGGGTGGTAGGTGGGTTTAGACACATCCTCAAATTTCT
*
13091769 ATCATGCCAATGCCATTTTT
130 ACCATGCCAATGCCATTTTT
* ** *
13091789 ATGGCCAGTGAATTCATATGAGCACTCCGCAACACCCACACACCAAGCGCTGGTGTCCTAAGCCC
1 ATGGCCA-TGAATTCATATGAGCACTCCCCAACACCCACACACCAAGAACAGGTGTCCTAAGCCC
* *
13091854 GAGCCGAGCACC-ATGTGCGCCACGA-TCGGGTGGTAGGTGGGTTTAGGCACATCCTCAAATTTC
65 GAGCCGAGCACCAATGAGCGCCACGACT-GGGTGGTAGGTGGGTTTAGACACATCCTCAAATTTC
*
13091917 TGCCATGCCAATGCCATTTTT
129 TACCATGCCAATGCCATTTTT
13091938 ATGGC
1 ATGGC
13091943 TTGTAAATTC
Statistics
Matches: 131, Mismatches: 21, Indels: 5
0.83 0.13 0.03
Matches are distributed among these distances:
148 1 0.01
149 69 0.53
150 61 0.47
ACGTcount: A:0.23, C:0.28, G:0.24, T:0.25
Consensus pattern (149 bp):
ATGGCCATGAATTCATATGAGCACTCCCCAACACCCACACACCAAGAACAGGTGTCCTAAGCCCG
AGCCGAGCACCAATGAGCGCCACGACTGGGTGGTAGGTGGGTTTAGACACATCCTCAAATTTCTA
CCATGCCAATGCCATTTTT
Found at i:13093011 original size:90 final size:90
Alignment explanation
Indices: 13092895--13093124 Score: 246
Period size: 90 Copynumber: 2.6 Consensus size: 90
13092885 CCTTGATGCG
* * * * * * *
13092895 GGCGGTTGCCTCGAGCACCATTGGCACAAGCTGGCCCTTGGTATGGGTACTTACCTT-GACCACC
1 GGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCTTGGTACGGGCACTT-CCTTCGACCACC
13092959 ATCGATAGAAGATGGCCCCTGGTGAA
65 ATCGATAGAAGATGGCCCCTGGTGAA
** * * ** * *
13092985 GGCGGTTATGTCGAACACCATCGGCACATGCTGGGCCTTAGTGCGGGCGGTTGCTTCGATCACCA
1 GGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCTTGGTACGGGCACTTCCTTCGACCACCA
* * *
13093050 TCGGTAGAAGATGGCCCTTGGTGAG
66 TCGATAGAAGATGGCCCCTGGTGAA
* * **
13093075 GGCGGTTGCCTCGAATACCATCAACACATGCTGGGCCTTGGTACGGGCAC
1 GGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCTTGGTACGGGCAC
13093125 ATGCCTCAAC
Statistics
Matches: 111, Mismatches: 28, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
89 3 0.03
90 108 0.97
ACGTcount: A:0.20, C:0.27, G:0.31, T:0.22
Consensus pattern (90 bp):
GGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCTTGGTACGGGCACTTCCTTCGACCACCA
TCGATAGAAGATGGCCCCTGGTGAA
Found at i:13093034 original size:45 final size:44
Alignment explanation
Indices: 13092985--13093122 Score: 114
Period size: 45 Copynumber: 3.1 Consensus size: 44
13092975 CCCTGGTGAA
*
13092985 GGCGGTTATGTCGAACACCATCGGCACATGCTGGGCCTTAGTGCG
1 GGCGGTTAT-TCGAACACCATCGGCACATGCTGGGCCTTGGTGCG
* * * * * * * *
13093030 GGCGGTTGCTTCGATCACCATCGGTAGAAGATGGCCCTTGGTGAG
1 GGCGGTT-ATTCGAACACCATCGGCACATGCTGGGCCTTGGTGCG
** * ** *
13093075 GGCGGTTGCCTCGAATACCATCAACACATGCTGGGCCTTGGTACG
1 GGCGGTT-ATTCGAACACCATCGGCACATGCTGGGCCTTGGTGCG
13093120 GGC
1 GGC
13093123 ACATGCCTCA
Statistics
Matches: 71, Mismatches: 21, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
45 70 0.99
46 1 0.01
ACGTcount: A:0.18, C:0.26, G:0.33, T:0.22
Consensus pattern (44 bp):
GGCGGTTATTCGAACACCATCGGCACATGCTGGGCCTTGGTGCG
Found at i:13093065 original size:135 final size:135
Alignment explanation
Indices: 13092823--13093071 Score: 349
Period size: 135 Copynumber: 1.8 Consensus size: 135
13092813 CCTCGATCAG
* * * *
13092823 CATCGATAGAAGATGGTCCCTGGTGTGTGCGGTTACCTCGAACACCATCGATACGTGCTGGGCCT
1 CATCGATAGAAGATGGCCCCTGGTGAGTGCGGTTACCTCGAACACCATCGACACATGCTGGGCCT
* *
13092888 TGATGCGGGCGGTTGCCTCGAGCACCATTGGCACAAGCTGGCCCTTGGTATGGGTACTTACCTTG
66 TGATGCGGGCGGTTGCCTCGAGCACCATCGGCACAAGATGGCCCTTGGTATGGGTACTTACCTTG
13092953 ACCAC
131 ACCAC
** *
13092958 CATCGATAGAAGATGGCCCCTGGTGAAG-GCGGTTATGTCGAACACCATCGGCACATGCTGGGCC
1 CATCGATAGAAGATGGCCCCTGGTG-AGTGCGGTTACCTCGAACACCATCGACACATGCTGGGCC
* * * *
13093022 TT-AGTGCGGGCGGTTGCTTCGATCACCATCGGTAGAAGATGGCCCTTGGT
65 TTGA-TGCGGGCGGTTGCCTCGAGCACCATCGGCACAAGATGGCCCTTGGT
13093072 GAGGGCGGTT
Statistics
Matches: 99, Mismatches: 13, Indels: 4
0.85 0.11 0.03
Matches are distributed among these distances:
134 1 0.01
135 97 0.98
136 1 0.01
ACGTcount: A:0.19, C:0.26, G:0.31, T:0.24
Consensus pattern (135 bp):
CATCGATAGAAGATGGCCCCTGGTGAGTGCGGTTACCTCGAACACCATCGACACATGCTGGGCCT
TGATGCGGGCGGTTGCCTCGAGCACCATCGGCACAAGATGGCCCTTGGTATGGGTACTTACCTTG
ACCAC
Found at i:13093140 original size:90 final size:90
Alignment explanation
Indices: 13092955--13093145 Score: 222
Period size: 90 Copynumber: 2.1 Consensus size: 90
13092945 TTACCTTGAC
* ** **
13092955 CACCATCGATAGAAGATGGCCCCTGGTGAAGGCGGTTATGTCGAACACCATCGGCACATGCTGGG
1 CACCATCGGTAGAAGATGGCCCCTGGTGAAGGCGGTTACCTCGAACACCATCAACACATGCTGGG
* *** * *
13093020 CCTTAGTGCGGGCGGTTGCTTCGAT
66 CCTTAGTACGGGCACATGCCTCAAT
* * * *
13093045 CACCATCGGTAGAAGATGGCCCTTGGTGAGGGCGGTTGCCTCGAATACCATCAACACATGCTGGG
1 CACCATCGGTAGAAGATGGCCCCTGGTGAAGGCGGTTACCTCGAACACCATCAACACATGCTGGG
*
13093110 CCTTGGTACGGGCACATGCCTCAA-
66 CCTTAGTACGGGCACATGCCTCAAT
13093134 CTACCATCGGTA
1 C-ACCATCGGTA
13093146 CAAGCCGACC
Statistics
Matches: 84, Mismatches: 16, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
89 1 0.01
90 83 0.99
ACGTcount: A:0.21, C:0.27, G:0.30, T:0.21
Consensus pattern (90 bp):
CACCATCGGTAGAAGATGGCCCCTGGTGAAGGCGGTTACCTCGAACACCATCAACACATGCTGGG
CCTTAGTACGGGCACATGCCTCAAT
Found at i:13107782 original size:13 final size:13
Alignment explanation
Indices: 13107764--13107789 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
13107754 TCAACGGCAC
13107764 ATGATGGCACATG
1 ATGATGGCACATG
13107777 ATGATGGCACATG
1 ATGATGGCACATG
13107790 CATCGACCAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.15, G:0.31, T:0.23
Consensus pattern (13 bp):
ATGATGGCACATG
Found at i:13108236 original size:90 final size:90
Alignment explanation
Indices: 13108140--13108351 Score: 264
Period size: 90 Copynumber: 2.4 Consensus size: 90
13108130 ACAAGTCGAC
* * * * *
13108140 CCTTGGTGTGGGCACTTACTTCGACCACCATTGGCAGAAGATGGCCCTTGGTGCGACC-GATTAC
1 CCTTGGTGTGGGCACTTGCCTCGATCACCATCGGCAGAAGATGGCCCTTGATGCGACCAG-TTAC
* *
13108204 GTCGAACACCATCGGCACATGTTGGG
65 CTCGAACACCATCGGCACATGCTGGG
* ** * * *
13108230 CTTTGGTGTGGGCGGTTGCCTCGATCAGCATCGGTAGAAGATGGCCCTTGATGCGAGCAGTTACC
1 CCTTGGTGTGGGCACTTGCCTCGATCACCATCGGCAGAAGATGGCCCTTGATGCGACCAGTTACC
*
13108295 TTGAACACCATCGGCACATGCTGGG
66 TCGAACACCATCGGCACATGCTGGG
* *
13108320 CCTTAGTGCGGGCACTTGCCTCGATCACCATC
1 CCTTGGTGTGGGCACTTGCCTCGATCACCATC
13108352 AGCACATGCC
Statistics
Matches: 101, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
90 100 0.99
91 1 0.01
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (90 bp):
CCTTGGTGTGGGCACTTGCCTCGATCACCATCGGCAGAAGATGGCCCTTGATGCGACCAGTTACC
TCGAACACCATCGGCACATGCTGGG
Found at i:13108350 original size:45 final size:44
Alignment explanation
Indices: 13108205--13108360 Score: 132
Period size: 45 Copynumber: 3.5 Consensus size: 44
13108195 ACCGATTACG
* * * *
13108205 TCGAACACCATCGGCACATGTTGGGCTTTGGTGTGGGCGGTTGCC
1 TCGAACACCATCGGCACATGCTGGGCCTT-GTGCGGGCAGTTGCC
* * * * * * * * *
13108250 TCGATCAGCATCGGTAGAAGATGGCCCTTGATGCGAGCAGTTACC
1 TCGAACACCATCGGCACATGCTGGGCCTTG-TGCGGGCAGTTGCC
* *
13108295 TTGAACACCATCGGCACATGCTGGGCCTTAGTGCGGGCACTTGCC
1 TCGAACACCATCGGCACATGCTGGGCCTT-GTGCGGGCAGTTGCC
* *
13108340 TCGATCACCATCAGCACATGC
1 TCGAACACCATCGGCACATGC
13108361 CATGCCTCGA
Statistics
Matches: 83, Mismatches: 26, Indels: 4
0.73 0.23 0.04
Matches are distributed among these distances:
44 1 0.01
45 81 0.98
46 1 0.01
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (44 bp):
TCGAACACCATCGGCACATGCTGGGCCTTGTGCGGGCAGTTGCC
Found at i:13116428 original size:45 final size:45
Alignment explanation
Indices: 13116377--13116480 Score: 113
Period size: 45 Copynumber: 2.3 Consensus size: 45
13116367 TTGCCTCATG
* * *
13116377 CACCATCGGCACGTGTTGGGCC-TTGGTATGGGCACATGCCAT-GAC
1 CACCATCGGCACGTGCT-AGCCATTGGTATGGGCACATACC-TGGAC
** **
13116422 CACCATCATCACAAGCTAGCCATTGGTATGGGCACATACCTGGAC
1 CACCATCGGCACGTGCTAGCCATTGGTATGGGCACATACCTGGAC
13116467 CACCATCGGCACGT
1 CACCATCGGCACGT
13116481 TCCATGCCTC
Statistics
Matches: 46, Mismatches: 11, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
44 4 0.09
45 42 0.91
ACGTcount: A:0.23, C:0.32, G:0.25, T:0.20
Consensus pattern (45 bp):
CACCATCGGCACGTGCTAGCCATTGGTATGGGCACATACCTGGAC
Found at i:13121902 original size:71 final size:71
Alignment explanation
Indices: 13121767--13121905 Score: 170
Period size: 71 Copynumber: 2.0 Consensus size: 71
13121757 TAGCCCTTGG
* * * **
13121767 AACAGGCACTTGCCTCGACCAGCATCGACACATGCATGCCTCGATAACCATCAATAGAGGATGGC
1 AACAGGCACTTACCTCGACCACCATCGACACATGCATGCCTAGATAACCATCAATAGAAAATGGC
13121832 CCTCGA
66 CCTCGA
* * * * * **
13121838 AACAGGCACTTATCTCGACCACCATTGACATATGCATGCCTAGATGAGCATCGGTAGAAAATGGC
1 AACAGGCACTTACCTCGACCACCATCGACACATGCATGCCTAGATAACCATCAATAGAAAATGGC
13121903 CCT
66 CCT
13121906 TGGTGCGGGC
Statistics
Matches: 56, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
71 56 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.19
Consensus pattern (71 bp):
AACAGGCACTTACCTCGACCACCATCGACACATGCATGCCTAGATAACCATCAATAGAAAATGGC
CCTCGA
Found at i:13136797 original size:45 final size:45
Alignment explanation
Indices: 13136706--13136828 Score: 120
Period size: 45 Copynumber: 2.7 Consensus size: 45
13136696 AGATGGTTCC
* * * * * * **
13136706 TGGTGCATGTGGTTGCCTCGAACAACATCGGCACATGCTGGGCCT
1 TGGTGCAGGTGGTTGCCTCGACCACCATCGACACAAGCCGACCCT
13136751 TGGTGCAGGTGGTTGCCTCGACCACCATCGACACAAGCCGACCCT
1 TGGTGCAGGTGGTTGCCTCGACCACCATCGACACAAGCCGACCCT
** *** *
13136796 TGGTGTGGGCACTTACCTCGACCACCATCGACA
1 TGGTGCAGGTGGTTGCCTCGACCACCATCGACA
13136829 GAAGATGGCC
Statistics
Matches: 64, Mismatches: 14, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.21
Consensus pattern (45 bp):
TGGTGCAGGTGGTTGCCTCGACCACCATCGACACAAGCCGACCCT
Found at i:13137072 original size:27 final size:27
Alignment explanation
Indices: 13137034--13137098 Score: 121
Period size: 27 Copynumber: 2.4 Consensus size: 27
13137024 TACGGGCACT
13137034 TGCCTCGATCACTGTCGACACGTGCCA
1 TGCCTCGATCACTGTCGACACGTGCCA
*
13137061 TGCCTCGATCACTGTCGGCACGTGCCA
1 TGCCTCGATCACTGTCGACACGTGCCA
13137088 TGCCTCGATCA
1 TGCCTCGATCA
13137099 GCATTGACAG
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.17, C:0.37, G:0.23, T:0.23
Consensus pattern (27 bp):
TGCCTCGATCACTGTCGACACGTGCCA
Found at i:13146878 original size:45 final size:44
Alignment explanation
Indices: 13146829--13147057 Score: 165
Period size: 45 Copynumber: 5.1 Consensus size: 44
13146819 AAATGGTCCC
* *
13146829 TGGTGCATGCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCT
1 TGGTGCA-GCAGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
* * * * * *
13146874 TGGTG-AGGGTAGTTGCCTCGAGCACCATTGGCACAAGCTAGCCCT
1 TGGTGCA--GCAGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
* * * * * * * * ** *
13146919 TGGTGCAGGCACTTCCCT-TAACCTCCATCGGTAGAAGATGACCCC
1 TGGTGCA-GCAGTTGCCTCGAA-CACCATCGGCACATGCTGGGCCT
* * *
13146964 TGGTGCAGGCAGTTGCATTGAACACCATCAGCACATGCTGGGCCT
1 TGGTGCA-GCAGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
* *
13147009 TGGTGCGAGCAGTTACCTCGAACACCATCGGCACATGTTGGGCCT
1 TGGTGC-AGCAGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
13147054 TGGT
1 TGGT
13147058 ATAGGCATAT
Statistics
Matches: 139, Mismatches: 40, Indels: 10
0.74 0.21 0.05
Matches are distributed among these distances:
44 2 0.01
45 133 0.96
46 4 0.03
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (44 bp):
TGGTGCAGCAGTTGCCTCGAACACCATCGGCACATGCTGGGCCT
Found at i:13146911 original size:162 final size:161
Alignment explanation
Indices: 13146558--13146932 Score: 412
Period size: 162 Copynumber: 2.3 Consensus size: 161
13146548 CTTTGGTACG
* * *
13146558 GGCACTTGCCTCGACCACCATTGGCACAAGCTGGCCCTTGGAACAAGCACTTGCCTTGACCACCA
1 GGCACTTGCCTCGACCACCATTGGCACAAGCTAGCCCTTGGTACAAGCACTTGCCTAGACCACCA
* * * *
13146623 TCGACACATGTATGCCTCGATGAGTATCGACAGAAGATGGCCCTTGGTACAGGCGCTTGCCTCGA
66 TCGACACATGCATGCCTCGATCAGCATCGACAGAAAATGGCCCTTGGTACAGGCGCTTGCCTCGA
** * *
13146688 GTACCATCGACACGTGTTGGGCCTTGGTGCA
131 ACACCATCGACACATGCTGGGCCTTGGTGCA
* *** * ***
13146719 GGCACATGCCTCGACCACCATCATCACAAGCTAGCCATTGGTATGGGCACTTGCCTAGACCACCA
1 GGCACTTGCCTCGACCACCATTGGCACAAGCTAGCCCTTGGTACAAGCACTTGCCTAGACCACCA
** * * * * *
13146784 TCGACATGTGCCATGCCTCGATCAGCATTGATAGAAAATGGTCCC-TGGTGCATGCGGTTGCCTC
66 TCGACACATG-CATGCCTCGATCAGCATCGACAGAAAATGG-CCCTTGGTACAGGCGCTTGCCTC
**
13146848 GAACACCATCGGTACATGCTGGGCCTTGGTG-A
129 GAACACCATCGACACATGCTGGGCCTTGGTGCA
* * * * *
13146880 GGGTAGTTGCCTCGAGCACCATTGGCACAAGCTAGCCCTTGGTGCAGGCACTT
1 -GGCACTTGCCTCGACCACCATTGGCACAAGCTAGCCCTTGGTACAAGCACTT
13146933 CCCTTAACCT
Statistics
Matches: 172, Mismatches: 39, Indels: 5
0.80 0.18 0.02
Matches are distributed among these distances:
161 63 0.37
162 106 0.62
163 3 0.02
ACGTcount: A:0.22, C:0.30, G:0.26, T:0.22
Consensus pattern (161 bp):
GGCACTTGCCTCGACCACCATTGGCACAAGCTAGCCCTTGGTACAAGCACTTGCCTAGACCACCA
TCGACACATGCATGCCTCGATCAGCATCGACAGAAAATGGCCCTTGGTACAGGCGCTTGCCTCGA
ACACCATCGACACATGCTGGGCCTTGGTGCA
Found at i:13147071 original size:45 final size:45
Alignment explanation
Indices: 13146844--13147136 Score: 155
Period size: 45 Copynumber: 6.5 Consensus size: 45
13146834 CATGCGGTTG
* * * *
13146844 CCTCGAACACCATCGGTACATGCTGGGCCTTGGTGAGGGTAGTTG
1 CCTCGAACACCATCGGCACATGCTGGGCCTTGGTGAGAGCAGTTA
* * * * * * *
13146889 CCTCGAGCACCATTGGCACAAGCTAGCCCTTGGTGCAG-GCACTTC
1 CCTCGAACACCATCGGCACATGCTGGGCCTTGGTG-AGAGCAGTTA
* * * * * * ** * *
13146934 CCT-TAACCTCCATCGGTAGAAGATGACCCCTGGTGCAG-GCAGTTG
1 CCTCGAA-CACCATCGGCACATGCTGGGCCTTGGTG-AGAGCAGTTA
* * * *
13146979 CATTGAACACCATCAGCACATGCTGGGCCTTGGTGCGAGCAGTTA
1 CCTCGAACACCATCGGCACATGCTGGGCCTTGGTGAGAGCAGTTA
* *
13147024 CCTCGAACACCATCGGCACATGTTGGGCCTTGGT-ATAGGCA-TATA
1 CCTCGAACACCATCGGCACATGCTGGGCCTTGGTGAGA-GCAGT-TA
* * * * * * * * *
13147069 CCTCGACCACCATCGACACAAGCAGGCCCTTGGTGTGGGCACTTG
1 CCTCGAACACCATCGGCACATGCTGGGCCTTGGTGAGAGCAGTTA
* * *
13147114 CCTCGATCACCGTCGACACATGC
1 CCTCGAACACCATCGGCACATGC
13147137 CATGGATCGG
Statistics
Matches: 187, Mismatches: 53, Indels: 16
0.73 0.21 0.06
Matches are distributed among these distances:
44 4 0.02
45 178 0.95
46 5 0.03
ACGTcount: A:0.22, C:0.31, G:0.26, T:0.22
Consensus pattern (45 bp):
CCTCGAACACCATCGGCACATGCTGGGCCTTGGTGAGAGCAGTTA
Found at i:13147082 original size:135 final size:135
Alignment explanation
Indices: 13146826--13147083 Score: 302
Period size: 135 Copynumber: 1.9 Consensus size: 135
13146816 AGAAAATGGT
* * * * * * * *
13146826 CCCTGGTGCATGCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCTTGGTGAGGGTAGTTGCC
1 CCCTGGTGCAGGCAGTTGCATCGAACACCATCAGCACATGCTGGGCCTTGGTGAGAGCAGTTACC
* * * * * *
13146891 TCGAGCACCATTGGCACAAGCTAGCCCTTGGTGCAGGCACTTCCCTTAACCTCCATCGGTAGAAG
66 TCGAACACCATCGGCACAAGCTAGCCCTTGGTACAGGCACTTACCTCAACCACCATCGGTAGAAG
13146956 ATGAC
131 ATGAC
* *
13146961 CCCTGGTGCAGGCAGTTGCATTGAACACCATCAGCACATGCTGGGCCTTGGTGCGAGCAGTTACC
1 CCCTGGTGCAGGCAGTTGCATCGAACACCATCAGCACATGCTGGGCCTTGGTGAGAGCAGTTACC
* * * * * *
13147026 TCGAACACCATCGGCACATGTTGGGCCTTGGTATAGGCA-TATACCTCGACCACCATCG
66 TCGAACACCATCGGCACAAGCTAGCCCTTGGTACAGGCACT-TACCTCAACCACCATCG
13147084 ACACAAGCAG
Statistics
Matches: 100, Mismatches: 22, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
134 1 0.01
135 99 0.99
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.22
Consensus pattern (135 bp):
CCCTGGTGCAGGCAGTTGCATCGAACACCATCAGCACATGCTGGGCCTTGGTGAGAGCAGTTACC
TCGAACACCATCGGCACAAGCTAGCCCTTGGTACAGGCACTTACCTCAACCACCATCGGTAGAAG
ATGAC
Found at i:13152218 original size:149 final size:148
Alignment explanation
Indices: 13151844--13152224 Score: 457
Period size: 150 Copynumber: 2.6 Consensus size: 148
13151834 CCCGGGCTAT
* * ** * * *
13151844 GCACCATGCACACCACGATTGGGCAGTAGGTGGGTTTAAGG-ATATCTTTATGTTTCTG-CAGTG
1 GCACCATGCATACCACGATCGGGTGGTAGGTGGGTTT-AGGCACATCTTCATATTTCTGCCA-TG
* * * *
13151907 CCAAAGCCATTTTTGTGGTCCGTGAATTTATATGAGCGCTCCCCAATGCCCGTCCACCACACACG
64 CCAATGCCATTTTTATGG-CCGTGAATTCATATGAGCACTCCCCAATGCCCGTCCACCACACACG
*
13151972 AGTGTCTTGAGCTCGAGCCGA
128 AGTGTCCTGAGCTCGAGCCGA
*
13151993 GCACCAATG-ATCACCACGATCGGGTGGTAGGTGGGTTCAGGCACATCTTCATATTTCTGCCATG
1 GCACC-ATGCAT-ACCACGATCGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATG
* * * **
13152057 CCAATGCCATTTTTATGGCCTGTGAATTCATATGAGCACTCCCTAGTGCCCG-CACACCACGCGT
64 CCAATGCCATTTTTATGGCC-GTGAATTCATATGAGCACTCCCCAATGCCCGTC-CACCACACAC
* *
13152121 GAGTGTCCTGAGC-CTGGGTCGA
127 GAGTGTCCTGAGCTC-GAGCCGA
* *
13152143 GCACCATGCATGCCACGATCGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCCATGCC
1 GCACCATGCATACCACGATCGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
13152208 AATGCCATTTTTATGGC
66 AATGCCATTTTTATGGC
13152225 TTGTTCATAC
Statistics
Matches: 201, Mismatches: 23, Indels: 16
0.84 0.10 0.07
Matches are distributed among these distances:
149 84 0.42
150 115 0.57
151 2 0.01
ACGTcount: A:0.21, C:0.26, G:0.25, T:0.28
Consensus pattern (148 bp):
GCACCATGCATACCACGATCGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATGCC
AATGCCATTTTTATGGCCGTGAATTCATATGAGCACTCCCCAATGCCCGTCCACCACACACGAGT
GTCCTGAGCTCGAGCCGA
Found at i:13152320 original size:28 final size:27
Alignment explanation
Indices: 13152281--13152342 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
13152271 AAGATTACTC
*
13152281 ATTTTCTAT-TTTTCATGATTTTTT-AA
1 ATTTTTTATGTTTTCA-GATTTTTTAAA
*
13152307 ATTTTTTATGTTTTGAGATTTTTTAAAA
1 ATTTTTTATGTTTTCAGATTTTTT-AAA
13152335 ATTTTTTA
1 ATTTTTTA
13152343 GAAGGAGTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
26 16 0.52
27 5 0.16
28 10 0.32
ACGTcount: A:0.26, C:0.03, G:0.06, T:0.65
Consensus pattern (27 bp):
ATTTTTTATGTTTTCAGATTTTTTAAA
Found at i:13168649 original size:150 final size:149
Alignment explanation
Indices: 13168355--13168756 Score: 461
Period size: 150 Copynumber: 2.7 Consensus size: 149
13168345 TCGCACCTTG
* * * * ** *
13168355 GCCCGGGCCGTGCACCTTGTGCACCACGATCGGGCAGTAGGTGGGTTTAAGG-ATATCTTCATGT
1 GCCCGAGCCGAGCACCATGTGCGCCACGATCGGGTGGTAGGTGGG-TTAAGGCATATCTTCATAT
** * * * * **
13168419 TTCT-ATAGTGCCAAAGCCATTTTTGTGGTCC-ATGAATTCATATGAGCGCTCCCCAATGCCCAC
65 TTCTGCCA-TGCCAATGCCATTTTTATGG-CCTGTGAATTCATATGAGCACTCCCCAACACCCAC
* *
13168482 GCACCACGCGCGGGTGTCCTGA
128 ACACCACGCGCGAGTGTCCTGA
* *
13168504 GCCCGAGCCGAGCACCAATGAT-CGCCACGATCGGGTGGTAGGTGGGTTCAGGCATATATTCATA
1 GCCCGAGCCGAGCACC-ATG-TGCGCCACGATCGGGTGGTAGGTGGGTTAAGGCATATCTTCATA
** *
13168568 TTTCTGCCATGCCAATGCCATTTTTATGGCCTGTGAATTCATATGAGCACTTTCCAACACCCGCA
64 TTTCTGCCATGCCAATGCCATTTTTATGGCCTGTGAATTCATATGAGCACTCCCCAACACCCACA
13168633 CACCACGCGCGAGTGTCCTGA
129 CACCACGCGCGAGTGTCCTGA
* * * *
13168654 GCCCGAGCCGAGCACCATGTGTGCCACGATCGGGTGATAGGTGGGTTTAGGCACATCTTCATATT
1 GCCCGAGCCGAGCACCATGTGCGCCACGATCGGGTGGTAGGTGGGTTAAGGCATATCTTCATATT
* * * *
13168719 TTTGCCTTGCCAATGCCATTTTTATGGCTTGTAAATTC
66 TCTGCCATGCCAATGCCATTTTTATGGCCTGTGAATTC
13168757 TTACAATGGT
Statistics
Matches: 216, Mismatches: 31, Indels: 12
0.83 0.12 0.05
Matches are distributed among these distances:
148 1 0.00
149 97 0.45
150 116 0.54
151 2 0.01
ACGTcount: A:0.21, C:0.27, G:0.25, T:0.27
Consensus pattern (149 bp):
GCCCGAGCCGAGCACCATGTGCGCCACGATCGGGTGGTAGGTGGGTTAAGGCATATCTTCATATT
TCTGCCATGCCAATGCCATTTTTATGGCCTGTGAATTCATATGAGCACTCCCCAACACCCACACA
CCACGCGCGAGTGTCCTGA
Found at i:13169203 original size:11 final size:11
Alignment explanation
Indices: 13169187--13169219 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
13169177 CGGTCAGGTT
13169187 CTCCGACGATG
1 CTCCGACGATG
13169198 CTCCGACGATG
1 CTCCGACGATG
*
13169209 CTTCGACGATG
1 CTCCGACGATG
13169220 TTGCCCCGGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 21 1.00
ACGTcount: A:0.18, C:0.33, G:0.27, T:0.21
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:13174086 original size:33 final size:27
Alignment explanation
Indices: 13174011--13174073 Score: 126
Period size: 27 Copynumber: 2.3 Consensus size: 27
13174001 CAGTCTCCAT
13174011 CCTTGGACTCTCGGTCACGATCCCTTC
1 CCTTGGACTCTCGGTCACGATCCCTTC
13174038 CCTTGGACTCTCGGTCACGATCCCTTC
1 CCTTGGACTCTCGGTCACGATCCCTTC
13174065 CCTTGGACT
1 CCTTGGACT
13174074 ATTTCTTTCG
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 36 1.00
ACGTcount: A:0.11, C:0.40, G:0.19, T:0.30
Consensus pattern (27 bp):
CCTTGGACTCTCGGTCACGATCCCTTC
Found at i:13175765 original size:22 final size:22
Alignment explanation
Indices: 13175733--13175785 Score: 88
Period size: 22 Copynumber: 2.4 Consensus size: 22
13175723 GTGTGACACG
*
13175733 GGCACATGCCTCGACCACCATC
1 GGCACAAGCCTCGACCACCATC
13175755 GGCACAAGCCTCGACCACCATC
1 GGCACAAGCCTCGACCACCATC
*
13175777 AGCACAAGC
1 GGCACAAGC
13175786 TGGCCCTTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.28, C:0.43, G:0.19, T:0.09
Consensus pattern (22 bp):
GGCACAAGCCTCGACCACCATC
Found at i:13183291 original size:6 final size:6
Alignment explanation
Indices: 13183280--13183307 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
13183270 TCCCTATCGT
13183280 CCTTAC CCTTAC CCTTAC CCTTAC CCTT
1 CCTTAC CCTTAC CCTTAC CCTTAC CCTT
13183308 GGGCTTGAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.50, G:0.00, T:0.36
Consensus pattern (6 bp):
CCTTAC
Found at i:13198337 original size:150 final size:149
Alignment explanation
Indices: 13198065--13198422 Score: 425
Period size: 150 Copynumber: 2.4 Consensus size: 149
13198055 AGATTAGGTA
* * * * * *
13198065 GTAGGTGGGCTCAGGGATATCTTCATGTTT-TTGCAGTGCCAAAGCCATTTTTGTGG-TCCATGA
1 GTAGGTGGGCTCAGGCACATCTTCATATTTCTTCCA-TGCCAATGCCATTTTTGTGGCT-TATGA
* * * * * ** *
13198128 ATTCATATGAGCGCTCCCCAATGTCCGCGCACCACGTGCGGGTGTCCTGAGCCCGGGTCGAGCAT
64 ATTCATATGAGCACTCCCCAATGCCCACACACCACGCGCCAGTGTCCTGAGCCCAGGTCGAGCA-
*
13198193 CAATG-ATTGCCACGATCGGGTG
128 CAATGCA-TGCCACGATCGGATG
* *
13198215 GTAGGTGGGCTCAGGCACATCTTTATATTTCTTCCATGCCAATGCCATTTTTGTGGCTTTTGAAT
1 GTAGGTGGGCTCAGGCACATCTTCATATTTCTTCCATGCCAATGCCATTTTTGTGGCTTATGAAT
* * *
13198280 TCATATGAGCACTCCTCAGTGCCCACACACCACGCGCCAGTGTCCTGAGCCCAGGTCGAGCACCA
66 TCATATGAGCACTCCCCAATGCCCACACACCACGCGCCAGTGTCCTGAGCCCAGGTCGAGCACAA
13198345 TGCATGCCACGATCGGATG
131 TGCATGCCACGATCGGATG
* * * * * *
13198364 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATACCAATGCCACTTTTATGGCTT
1 GTAGGTGGGCTCAGGCACATCTTCATATTTCTTCCATGCCAATGCCATTTTTGTGGCTT
13198423 GTACATTTAT
Statistics
Matches: 178, Mismatches: 27, Indels: 7
0.84 0.13 0.03
Matches are distributed among these distances:
149 70 0.39
150 103 0.58
151 5 0.03
ACGTcount: A:0.20, C:0.27, G:0.25, T:0.28
Consensus pattern (149 bp):
GTAGGTGGGCTCAGGCACATCTTCATATTTCTTCCATGCCAATGCCATTTTTGTGGCTTATGAAT
TCATATGAGCACTCCCCAATGCCCACACACCACGCGCCAGTGTCCTGAGCCCAGGTCGAGCACAA
TGCATGCCACGATCGGATG
Found at i:13198421 original size:149 final size:150
Alignment explanation
Indices: 13198125--13198422 Score: 402
Period size: 149 Copynumber: 2.0 Consensus size: 150
13198115 TTGTGGTCCA
* * * * * ** *
13198125 TGAATTCATATGAGCGCTCCCCAATGTCCGCGCACCACGTGCGGGTGTCCTGAGCCCGGGTCGAG
1 TGAATTCATATGAGCACTCCCCAATGCCCACACACCACGCGCCAGTGTCCTGAGCCCAGGTCGAG
* * * *
13198190 CATCAATGATTGCCACGATCGGGTGGTAGGTGGGCTCAGGCACATCTTTATATTTCTTCCATGCC
66 CATCAATGATTGCCACGATCGGATGGTAGGTGGGCTCAGGCACATCTTCATATTTCTGCCATACC
* *
13198255 AATGCCATTTTTGTGGCTTT
131 AATGCCACTTTTATGGCTTT
* *
13198275 TGAATTCATATGAGCACTCCTCAGTGCCCACACACCACGCGCCAGTGTCCTGAGCCCAGGTCGAG
1 TGAATTCATATGAGCACTCCCCAATGCCCACACACCACGCGCCAGTGTCCTGAGCCCAGGTCGAG
* * *
13198340 CA-CCATGCA-TGCCACGATCGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCCATAC
66 CATCAATG-ATTGCCACGATCGGATGGTAGGTGGGCTCAGGCACATCTTCATATTTCTGCCATAC
13198403 CAATGCCACTTTTATGGCTT
130 CAATGCCACTTTTATGGCTT
13198423 GTACATTTAT
Statistics
Matches: 128, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
149 70 0.55
150 58 0.45
ACGTcount: A:0.20, C:0.28, G:0.24, T:0.27
Consensus pattern (150 bp):
TGAATTCATATGAGCACTCCCCAATGCCCACACACCACGCGCCAGTGTCCTGAGCCCAGGTCGAG
CATCAATGATTGCCACGATCGGATGGTAGGTGGGCTCAGGCACATCTTCATATTTCTGCCATACC
AATGCCACTTTTATGGCTTT
Found at i:13198521 original size:26 final size:28
Alignment explanation
Indices: 13198492--13198543 Score: 81
Period size: 26 Copynumber: 1.9 Consensus size: 28
13198482 TTTTCTATTT
*
13198492 TTCATGATTTTTG-AAAT-TTTTTACGG
1 TTCAAGATTTTTGAAAATATTTTTACGG
13198518 TTCAAGATTTTTGAAAATATTTTTAC
1 TTCAAGATTTTTGAAAATATTTTTAC
13198544 AAGGATTTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 12 0.52
27 4 0.17
28 7 0.30
ACGTcount: A:0.29, C:0.08, G:0.12, T:0.52
Consensus pattern (28 bp):
TTCAAGATTTTTGAAAATATTTTTACGG
Found at i:13199352 original size:162 final size:161
Alignment explanation
Indices: 13199022--13199438 Score: 419
Period size: 162 Copynumber: 2.6 Consensus size: 161
13199012 CATCGACCAT
* * * * * * *
13199022 CATCGGCACAGGCT-GCCCTTTAGTACGAGCACTTGCCTTGACCGCCATCAGCACAAGCTGGCCT
1 CATCGGCACATGCTGGGCC-TTGGTACGGGCACTTGCCTCGACCACCATCAGCACAAGCTGGCCA
* * * * *
13199086 TTGGAATAGGCACTTACCTCGACCACCATCAACACATGCATGCCTTAATGAGCATTAGCAGAAGA
65 TTGGTACAGGCACTTACCTCGACCACCATCAACACATGCATGCCTCAATCAGCATTAGCAAAAGA
** *
13199151 TGGCCCTTGGTGCAGGCGGTTGCCTTGAGCAC
130 TGGCCCTTGGTGCAGGCGGTTGCCTCAAACAC
* * * * *
13199183 CATCGGCACGTGTTGGGCCTTGGTGCGGGCACATGCCTCGACCACCATCATCACAAGCTGGCCAT
1 CATCGGCACATGCTGGGCCTTGGTACGGGCACTTGCCTCGACCACCATCAGCACAAGCTGGCCAT
* * * *** * *
13199248 TGGTACAGGCACTTGCATGGACCACCATTGGCACGTGCCATGCCTCGATCAGCATCTA-CAAAAG
66 TGGTACAGGCACTTACCTCGACCACCATCAACACATG-CATGCCTCAATCAGCAT-TAGCAAAAG
*
13199312 ATGGTCCC-TGGTG-TGTGCGGTTGCCTCAAACAC
129 ATGG-CCCTTGGTGCAG-GCGGTTGCCTCAAACAC
* ** * * * *
13199345 TATCGGCACATGCTGGGCCTTGGTACGGGCGGTTGCCTCGAGCACCATCGGCACAAGCTGACCCT
1 CATCGGCACATGCTGGGCCTTGGTACGGGCACTTGCCTCGACCACCATCAGCACAAGCTGGCCAT
* *
13199410 TGGTTCGGGCACTTACCTCGACCACCATC
66 TGGTACAGGCACTTACCTCGACCACCATC
13199439 TGTAGAAGAT
Statistics
Matches: 204, Mismatches: 47, Indels: 9
0.78 0.18 0.03
Matches are distributed among these distances:
161 78 0.38
162 121 0.59
163 5 0.02
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.22
Consensus pattern (161 bp):
CATCGGCACATGCTGGGCCTTGGTACGGGCACTTGCCTCGACCACCATCAGCACAAGCTGGCCAT
TGGTACAGGCACTTACCTCGACCACCATCAACACATGCATGCCTCAATCAGCATTAGCAAAAGAT
GGCCCTTGGTGCAGGCGGTTGCCTCAAACAC
Found at i:13199378 original size:45 final size:45
Alignment explanation
Indices: 13199328--13199419 Score: 121
Period size: 45 Copynumber: 2.0 Consensus size: 45
13199318 CCTGGTGTGT
* * **
13199328 GCGGTTGCCTCAAACACTATCGGCACATGCTGGGCCTTGGTACGG
1 GCGGTTGCCTCAAACACCATCGGCACAAGCTGACCCTTGGTACGG
* * *
13199373 GCGGTTGCCTCGAGCACCATCGGCACAAGCTGACCCTTGGTTCGG
1 GCGGTTGCCTCAAACACCATCGGCACAAGCTGACCCTTGGTACGG
13199418 GC
1 GC
13199420 ACTTACCTCG
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.16, C:0.32, G:0.32, T:0.21
Consensus pattern (45 bp):
GCGGTTGCCTCAAACACCATCGGCACAAGCTGACCCTTGGTACGG
Found at i:13199429 original size:45 final size:45
Alignment explanation
Indices: 13199346--13199438 Score: 114
Period size: 45 Copynumber: 2.1 Consensus size: 45
13199336 CTCAAACACT
* ** ** * *
13199346 ATCGGCACATGCTGGGCCTTGGTACGGGCGGTTGCCTCGAGCACC
1 ATCGGCACAAGCTGACCCTTGGTACGGGCACTTACCTCGACCACC
*
13199391 ATCGGCACAAGCTGACCCTTGGTTCGGGCACTTACCTCGACCACC
1 ATCGGCACAAGCTGACCCTTGGTACGGGCACTTACCTCGACCACC
13199436 ATC
1 ATC
13199439 TGTAGAAGAT
Statistics
Matches: 40, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.17, C:0.34, G:0.28, T:0.20
Consensus pattern (45 bp):
ATCGGCACAAGCTGACCCTTGGTACGGGCACTTACCTCGACCACC
Found at i:13199564 original size:19 final size:19
Alignment explanation
Indices: 13199540--13199578 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
13199530 GCACATACTG
13199540 GGTGTCATGAGCCAACCTT
1 GGTGTCATGAGCCAACCTT
13199559 GGTGTCATGAGCCAACCTT
1 GGTGTCATGAGCCAACCTT
13199578 G
1 G
13199579 TATAGGGCCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.21, C:0.26, G:0.28, T:0.26
Consensus pattern (19 bp):
GGTGTCATGAGCCAACCTT
Done.