Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 68 of 195
Found at i:13740433 original size:45 final size:45
Alignment explanation
Indices: 13740333--13740643 Score: 146
Period size: 45 Copynumber: 6.9 Consensus size: 45
13740323 ATGCTGCCTT
* * * * * * * *
13740333 TTGGTACGGGCACTTGCCTCAATCGCCATGGGCACAAGCTGGGCCC
1 TTGGTGCGGGCAGTTGCCTCGATCACCATCGACACATGCT-GACCC
* * *
13740379 -TGGTACGGGCGGTTGCCTCGATCACCATCGACACATGCTAACCC
1 TTGGTGCGGGCAGTTGCCTCGATCACCATCGACACATGCTGACCC
* * * * * *
13740423 TTGGTGCGGGCAGTTACCTCGAGCACGATCGGCACAAGTTGACCC
1 TTGGTGCGGGCAGTTGCCTCGATCACCATCGACACATGCTGACCC
* * ** * * * * *
13740468 TCGATGCGGGCTCTTACCTCGATCACCACCAGTA-A-AAGATGGCCCC
1 TTGGTGCGGGCAGTTGCCTCGATCACCATC-G-ACACATGCT-GACCC
* * * **
13740514 TT-GTGCGGGCAGTTGCATCGAACACCATCGACACATGTTGGGCC
1 TTGGTGCGGGCAGTTGCCTCGATCACCATCGACACATGCTGACCC
* * * * * *
13740558 TTAGTGCGGACGGTTGCCTCGATCACTATCGACACATACTGGGCCC
1 TTGGTGCGGGCAGTTGCCTCGATCACCATCGACACATGCT-GACCC
** ** * * *
13740604 -TGGTATGGGTGGTTGCCTTGAACACCATCAACACATGCTG
1 TTGGTGCGGGCAGTTGCCTCGATCACCATCGACACATGCTG
13740644 GGCCTTAGTG
Statistics
Matches: 199, Mismatches: 58, Indels: 18
0.72 0.21 0.07
Matches are distributed among these distances:
43 1 0.01
44 11 0.06
45 176 0.88
46 11 0.06
ACGTcount: A:0.21, C:0.30, G:0.27, T:0.22
Consensus pattern (45 bp):
TTGGTGCGGGCAGTTGCCTCGATCACCATCGACACATGCTGACCC
Found at i:13746428 original size:26 final size:26
Alignment explanation
Indices: 13746377--13746429 Score: 63
Period size: 26 Copynumber: 2.0 Consensus size: 26
13746367 CTGGTCTGAT
* **
13746377 CTTAGACTCGGAATGGACTCTGTATG
1 CTTAGACTCGGAATGAACTCCCTATG
13746403 CTTAGACT-GGAAATGAACTCCCTATG
1 CTTAGACTCGG-AATGAACTCCCTATG
13746429 C
1 C
13746430 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
25 2 0.09
26 21 0.91
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCCTATG
Found at i:13747653 original size:45 final size:45
Alignment explanation
Indices: 13747532--13748010 Score: 200
Period size: 45 Copynumber: 10.7 Consensus size: 45
13747522 CATCGACCAT
* * * *
13747532 CATCGGTACAGGCT-ACCCTTTGGTACGGGCACTTGCCTCGATCAC
1 CATCGGCACAAGCTGACCC-TTGGTGCGGGCAGTTGCCTCGATCAC
* * * * *
13747577 CATGGGCACAAGCTGGGCCC-TGGTGCAGGCAGTTTCCTTGATCAC
1 CATCGGCACAAGCT-GACCCTTGGTGCGGGCAGTTGCCTCGATCAC
* * * *
13747622 CATTGGCACATGCTGACCCTTGGCGCGGGCAGTTGCCTCGAGCAC
1 CATCGGCACAAGCTGACCCTTGGTGCGGGCAGTTGCCTCGATCAC
* * * ** *
13747667 CATCAGCACAAGTTGACCCTCGGTGCGGGCTTTTGCCTCGACCAC
1 CATCGGCACAAGCTGACCCTTGGTGCGGGCAGTTGCCTCGATCAC
* * * * * * * * * *
13747712 CACCAGCAGAAGATGGCCCCTGGTGCGAGC-GATTACGTCGAACAC
1 CATCGGCACAAGCTGACCCTTGGTGCGGGCAG-TTGCCTCGATCAC
* * * ** * *
13747757 TATTGGCACATGCTGGGCCTTGGTGCAGG-AGGTTGCCTCAATCAC
1 CATCGGCACAAGCTGACCCTTGGTGCGGGCA-GTTGCCTCGATCAC
* * ** * * * * *
13747802 CATCAGCACATGCT-AGGTCTTGGTGCTGGCGGTTGCCTCAAACCC
1 CATCGGCACAAGCTGA-CCCTTGGTGCGGGCAGTTGCCTCGATCAC
*** ** * * *
13747847 CATCGGCAGGTGCTGGGCTTTGGTGCGGG-TGTTGCCTCGACCAC
1 CATCGGCACAAGCTGACCCTTGGTGCGGGCAGTTGCCTCGATCAC
* * * * * * * *
13747891 CATTGGTAGAAGATGGCCCTTGGTGTGGG-TGATTGCCTCGAGCAC
1 CATCGGCACAAGCTGACCCTTGGTGCGGGCAG-TTGCCTCGATCAC
* * * * ** *
13747936 CATCGGTACAAGCTGACCCTCGATACGGGCTCTTTG-CTCGACCAC
1 CATCGGCACAAGCTGACCCTTGGTGCGGGC-AGTTGCCTCGATCAC
* * *
13747981 CATCGGCACATGCTGGCCCTTGGTGTGGGC
1 CATCGGCACAAGCTGACCCTTGGTGCGGGC
13748011 GATCGCATCG
Statistics
Matches: 323, Mismatches: 99, Indels: 24
0.72 0.22 0.05
Matches are distributed among these distances:
44 38 0.12
45 278 0.86
46 4 0.01
47 3 0.01
ACGTcount: A:0.17, C:0.30, G:0.30, T:0.23
Consensus pattern (45 bp):
CATCGGCACAAGCTGACCCTTGGTGCGGGCAGTTGCCTCGATCAC
Found at i:13752538 original size:26 final size:26
Alignment explanation
Indices: 13752509--13752561 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13752499 CTGGTCCGAC
*
13752509 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCCTATG
*
13752535 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCCTATG
13752561 C
1 C
13752562 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATG
Found at i:13753190 original size:26 final size:26
Alignment explanation
Indices: 13753141--13753194 Score: 65
Period size: 27 Copynumber: 2.1 Consensus size: 26
13753131 TTTTTCACGA
* **
13753141 TTTTTAAATTTTTTATGGTTTGAGATT
1 TTTTTAAATTTTTTATAGAATGAG-TT
13753168 TTTTTAAATTTTTT-TAGAATGAGTT
1 TTTTTAAATTTTTTATAGAATGAGTT
13753193 TT
1 TT
13753195 GGCCCCAAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 4 0.17
26 6 0.25
27 14 0.58
ACGTcount: A:0.24, C:0.00, G:0.13, T:0.63
Consensus pattern (26 bp):
TTTTTAAATTTTTTATAGAATGAGTT
Found at i:13753749 original size:45 final size:45
Alignment explanation
Indices: 13753700--13753830 Score: 120
Period size: 45 Copynumber: 2.9 Consensus size: 45
13753690 ACAGACACTC
* * * * * *
13753700 ACCTCAATCGCCATCGACATAAGCTGGGCCC-TGGTGTGGGTAGTT
1 ACCTCAATCACCATCAACACAAGCT-GACCCTTGGTGCGGGCAGTT
*
13753745 ACCTCAATCACCATCAACACATGCTGACCCTTGGTGCGGGCAGTT
1 ACCTCAATCACCATCAACACAAGCTGACCCTTGGTGCGGGCAGTT
* * *** * *
13753790 ACCTCGAGCACCATCGGTACAAGTTGACCCTCGGTGCGGGC
1 ACCTCAATCACCATCAACACAAGCTGACCCTTGGTGCGGGC
13753831 TCTTGCCTCG
Statistics
Matches: 70, Mismatches: 15, Indels: 2
0.80 0.17 0.02
Matches are distributed among these distances:
44 4 0.06
45 66 0.94
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.21
Consensus pattern (45 bp):
ACCTCAATCACCATCAACACAAGCTGACCCTTGGTGCGGGCAGTT
Found at i:13753915 original size:45 final size:45
Alignment explanation
Indices: 13753860--13754040 Score: 143
Period size: 45 Copynumber: 4.0 Consensus size: 45
13753850 AGCAGAAGAT
* *
13753860 GGCCTCTGGTGCGGTCAGTTATGTCAAACACCATCGAAACATGCTG
1 GGCCT-TGGTGCGGTCAGTTATCTCGAACACCATCGAAACATGCTG
* * * **
13753906 GGCCTTGGTGCGGGT-AGTTTTCTCGATCACTATCGGTACATGCTG
1 GGCCTTGGTGC-GGTCAGTTATCTCGAACACCATCGAAACATGCTG
* * * * * *
13753951 GGCCTTGGTGAGGGCGGTTACCTCGAACACCATCGACACGTGCTG
1 GGCCTTGGTGCGGTCAGTTATCTCGAACACCATCGAAACATGCTG
* * * * * *
13753996 GGCTTTGGTACAGG-C-GTTACCTCGACCACTATCGACACATGCTG
1 GGCCTTGGTGC-GGTCAGTTATCTCGAACACCATCGAAACATGCTG
13754040 G
1 G
13754041 CTTTTGGTGT
Statistics
Matches: 109, Mismatches: 23, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
44 29 0.27
45 70 0.64
46 10 0.09
ACGTcount: A:0.19, C:0.27, G:0.29, T:0.25
Consensus pattern (45 bp):
GGCCTTGGTGCGGTCAGTTATCTCGAACACCATCGAAACATGCTG
Found at i:13762080 original size:90 final size:90
Alignment explanation
Indices: 13761941--13762148 Score: 206
Period size: 90 Copynumber: 2.3 Consensus size: 90
13761931 TCAACCCTCA
* * *
13761941 GTACGGGCTCTTGCC-TCGACCACTACCGGTAAAAGATGGCTCCTAGTGTGGGTGGTTG-AGTCG
1 GTACGGGCTCTT-CCTTCGACCACCATCGGTAAAAGATGGCTCCTAGTGTGGGTGGTCGCA-TCG
13762004 AACACCATCGACACAAGCTGGCCCTAG
64 AACACCATCGACACAAGCTGGCCCTAG
* * * * *
13762031 GTACGGGCTCTTCCTTCGACCACCATCGGTATATGCTGGC-CCTTGGTGTGGGTGGTCGCATTGA
1 GTACGGGCTCTTCCTTCGACCACCATCGGTAAAAGATGGCTCC-TAGTGTGGGTGGTCGCATCGA
** ** *
13762095 ACACCATCGGTACGCGCTGGCCCTTG
65 ACACCATCGACACAAGCTGGCCCTAG
* * * * *
13762121 GTGCGGTCACATGCTTCGACCACCATCG
1 GTACGGGCTCTTCCTTCGACCACCATCG
13762149 ACACCTGCTC
Statistics
Matches: 97, Mismatches: 18, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
89 4 0.04
90 92 0.95
91 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.24
Consensus pattern (90 bp):
GTACGGGCTCTTCCTTCGACCACCATCGGTAAAAGATGGCTCCTAGTGTGGGTGGTCGCATCGAA
CACCATCGACACAAGCTGGCCCTAG
Found at i:13774686 original size:45 final size:43
Alignment explanation
Indices: 13774620--13774763 Score: 128
Period size: 45 Copynumber: 3.2 Consensus size: 43
13774610 AGTTACATCA
13774620 AACACCATCGGCACATGCTGGGCCTTGGAACGGGTGGTTGCCTCG
1 AACACCATC-GCACATGCTGGGCCTTGGAACGGG-GGTTGCCTCG
* * ** * *
13774665 ATCACCATCAGCACATGCTGGGCCCTGGTGCGGGCGGTTACCTCA
1 AACACCATC-GCACATGCTGGGCCTTGGAACGGG-GGTTGCCTCG
* * * *
13774710 AACACCATCGATACGTGCTGGGCCTTAGTAA-GGGCGTTGCCTCG
1 AACACCATCG-CACATGCTGGGCCTT-GGAACGGGGGTTGCCTCG
*
13774754 ACCACCATCG
1 AACACCATCG
13774764 GCAGAAGATG
Statistics
Matches: 78, Mismatches: 19, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
44 17 0.22
45 60 0.77
46 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.20
Consensus pattern (43 bp):
AACACCATCGCACATGCTGGGCCTTGGAACGGGGGTTGCCTCG
Found at i:13774729 original size:90 final size:88
Alignment explanation
Indices: 13774593--13774914 Score: 272
Period size: 90 Copynumber: 3.6 Consensus size: 88
13774583 CGATAGAAGA
* * * *
13774593 TGGCCCCTGGTGTGGGCAGTTACATCAAACACCATCGGCACATGCTGGGCCTTGGAACGGGTGGT
1 TGGCCCTTGGTGCGGGCAGTTACATCAAACACCATCGACACATGCTGGCCCTTGGAACGGGT-GT
*
13774658 TGCCTCGATCACCATCAGCACATG
65 TGCCTCGACCACCATCAGCACATG
* * * * * * *
13774682 CTGGGCCC-TGGTGCGGGCGGTTACCTCAAACACCATCGATACGTGCTGGGCCTTAGTAA-GGGC
1 -T-GGCCCTTGGTGCGGGCAGTTACATCAAACACCATCGACACATGCTGGCCCTT-GGAACGGGT
* * *
13774745 GTTGCCTCGACCACCATCGGCAGAAG
63 GTTGCCTCGACCACCATCAGCACATG
* * * * * * * * * *
13774771 ATGGCCCTTGGTGTGAGCAGTTACCTCGAGCACCATCGGCACAAGCTGGCCCTCGGTACGGGCTC
1 -TGGCCCTTGGTGCGGGCAGTTACATCAAACACCATCGACACATGCTGGCCCTTGGAACGGG-TG
* *
13774836 TTACCTCAACCACCATCAGCACATG
64 TTGCCTCGACCACCATCAGCACATG
** * *
13774861 TTGGCCCTTGGTGCGGG-AGGTCGCATCGAACACCATCGACACGTGCTGGCCCTT
1 -TGGCCCTTGGTGCGGGCA-GTTACATCAAACACCATCGACACATGCTGGCCCTT
13774915 TGTGTGGTCA
Statistics
Matches: 182, Mismatches: 44, Indels: 12
0.76 0.18 0.05
Matches are distributed among these distances:
88 7 0.04
89 62 0.34
90 105 0.58
91 8 0.04
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.20
Consensus pattern (88 bp):
TGGCCCTTGGTGCGGGCAGTTACATCAAACACCATCGACACATGCTGGCCCTTGGAACGGGTGTT
GCCTCGACCACCATCAGCACATG
Found at i:13774840 original size:45 final size:45
Alignment explanation
Indices: 13774749--13774947 Score: 141
Period size: 45 Copynumber: 4.4 Consensus size: 45
13774739 AAGGGCGTTG
* * * *
13774749 CCTCGACCACCATCGGCAGAAGATGGCCCTTGGTGTGAGCAGTTA
1 CCTCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCACTTA
* * * * *
13774794 CCTCGAGCACCATCGGCACAAGCTGGCCCTCGGTACGGGCTCTTA
1 CCTCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCACTTA
* * * * **
13774839 CCTCAACCACCATCAGCACATGTTGGCCCTTGGTGCGGG-AGGT-
1 CCTCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCACTTA
* * ** * * * * * *
13774882 CGCATCGAACACCATCGACACGTGCTGGCCCTTTGTGTGGTCACATG
1 C-C-TCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCACTTA
13774929 CCTCGACCACCATCGGCAC
1 CCTCGACCACCATCGGCAC
13774948 CTGCTCACCC
Statistics
Matches: 118, Mismatches: 32, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
43 1 0.01
44 2 0.02
45 111 0.94
46 3 0.03
47 1 0.01
ACGTcount: A:0.20, C:0.35, G:0.26, T:0.20
Consensus pattern (45 bp):
CCTCGACCACCATCGGCACAAGATGGCCCTTGGTGCGGGCACTTA
Found at i:13774875 original size:179 final size:180
Alignment explanation
Indices: 13774561--13774946 Score: 445
Period size: 179 Copynumber: 2.1 Consensus size: 180
13774551 CCTTCGGTGC
* * * ** *
13774561 GGGCTCTTGCCTCAACCACCACCGATAGAAGATGGCCCCTGGTGTGGGCAGTTACATCAAACACC
1 GGGCACTTGCCTCGACCACCATCGGCAGAAGATGGCCCCTGGTGTGAGCAGTTACATCAAACACC
* * * * * * *
13774626 ATCGGCACATGCTGGGCCTTGGAACGGGTGGTTGCCTCGATCACCATCAGCACATGCTGGGCCCT
66 ATCGGCACAAGCTGGCCCTCGGAACGGGTGCTTACCTCAACCACCATCAGCACATGCTGGGCCCT
* * * * *
13774691 GGTGCGGGCGGTTACCTCAAACACCATCGATACGTGCTGGGCCTTAGTAA
131 GGTGCGGGAGGTCACATCAAACACCATCGACACGTGCTGGCCCTTAGTAA
* * * * *
13774741 GGGC-GTTGCCTCGACCACCATCGGCAGAAGATGGCCCTTGGTGTGAGCAGTTACCTCGAGCACC
1 GGGCACTTGCCTCGACCACCATCGGCAGAAGATGGCCCCTGGTGTGAGCAGTTACATCAAACACC
* *
13774805 ATCGGCACAAGCTGGCCCTCGGTACGGGCT-CTTACCTCAACCACCATCAGCACATG-TTGGCCC
66 ATCGGCACAAGCTGGCCCTCGGAACGGG-TGCTTACCTCAACCACCATCAGCACATGCTGGGCCC
* * * **
13774868 TTGGTGCGGGAGGTCGCATCGAACACCATCGACACGTGCTGGCCCTTTGTGT
130 -TGGTGCGGGAGGTCACATCAAACACCATCGACACGTGCTGGCCCTTAGTAA
* *
13774920 GGTCACATGCCTCGACCACCATCGGCA
1 GGGCACTTGCCTCGACCACCATCGGCA
13774947 CCTGCTCACC
Statistics
Matches: 171, Mismatches: 32, Indels: 6
0.82 0.15 0.03
Matches are distributed among these distances:
178 6 0.04
179 140 0.82
180 25 0.15
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (180 bp):
GGGCACTTGCCTCGACCACCATCGGCAGAAGATGGCCCCTGGTGTGAGCAGTTACATCAAACACC
ATCGGCACAAGCTGGCCCTCGGAACGGGTGCTTACCTCAACCACCATCAGCACATGCTGGGCCCT
GGTGCGGGAGGTCACATCAAACACCATCGACACGTGCTGGCCCTTAGTAA
Found at i:13774938 original size:90 final size:87
Alignment explanation
Indices: 13774657--13774947 Score: 233
Period size: 90 Copynumber: 3.3 Consensus size: 87
13774647 GAACGGGTGG
* * * *
13774657 TTGCCTCGATCACCATCAGCACATGCTGGGCCC-TGGTGCGGGCGGTTACCTCAAACACCATCGA
1 TTGCCTCGACCACCATCAGCACATG-TTGGCCCTTGGTGCGGGAGG-T-CCTCGAACACCATCGA
* * *
13774721 TACGTGCTGGGCCTTAGTAAGGGCG
63 CACGTGCTGGCCCTTAGTAAGGGCC
* * * * * * * * *
13774746 TTGCCTCGACCACCATCGGCAGAAGATGGCCCTTGGTGTGAGCAGTTACCTCGAGCACCATCGGC
1 TTGCCTCGACCACCATCAGCACATGTTGGCCCTTGGTGCG-GGAGGT-CCTCGAACACCATCGAC
** ** *
13774811 ACAAGCTGGCCCTCGGTACGGGCTC
64 ACGTGCTGGCCCTTAGTAAGGGC-C
* *
13774836 TTACCTCAACCACCATCAGCACATGTTGGCCCTTGGTGCGGGAGGTCGCATCGAACACCATCGAC
1 TTGCCTCGACCACCATCAGCACATGTTGGCCCTTGGTGCGGGAGGTC-C-TCGAACACCATCGAC
* ** *
13774901 ACGTGCTGGCCCTTTGTGTGGTCAC
64 ACGTGCTGGCCCTTAGTAAGGGC-C
* *
13774926 ATGCCTCGACCACCATCGGCAC
1 TTGCCTCGACCACCATCAGCAC
13774948 CTGCTCACCC
Statistics
Matches: 153, Mismatches: 44, Indels: 9
0.74 0.21 0.04
Matches are distributed among these distances:
88 6 0.04
89 64 0.42
90 83 0.54
ACGTcount: A:0.19, C:0.33, G:0.27, T:0.21
Consensus pattern (87 bp):
TTGCCTCGACCACCATCAGCACATGTTGGCCCTTGGTGCGGGAGGTCCTCGAACACCATCGACAC
GTGCTGGCCCTTAGTAAGGGCC
Found at i:13782079 original size:78 final size:78
Alignment explanation
Indices: 13781947--13782108 Score: 261
Period size: 78 Copynumber: 2.1 Consensus size: 78
13781937 CTTTGATTCA
* *
13781947 TCCCTCCCCTTTCCCTCGTTGACCTTCCTTCTTTTCATGCTACCCCCTCCGGGGTTAGGCATGAC
1 TCCCTCCCATTTCCCTCGTTGACCTTCCTTCTTTTCATGCTACCCCCTACGGGGTTAGGCATGAC
13782012 CCGAGGCCCTTCG
66 CCGAGGCCCTTCG
* * * *
13782025 TCCCTCCCATTTCCCTCGTTGACCTTCTTTCTTTTCATGCTACCCCTTATGGGGTTGGGCATGAC
1 TCCCTCCCATTTCCCTCGTTGACCTTCCTTCTTTTCATGCTACCCCCTACGGGGTTAGGCATGAC
*
13782090 CTGAGGCCCTTCG
66 CCGAGGCCCTTCG
13782103 TCCCTC
1 TCCCTC
13782109 GGTCTCAATC
Statistics
Matches: 77, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
78 77 1.00
ACGTcount: A:0.09, C:0.40, G:0.18, T:0.33
Consensus pattern (78 bp):
TCCCTCCCATTTCCCTCGTTGACCTTCCTTCTTTTCATGCTACCCCCTACGGGGTTAGGCATGAC
CCGAGGCCCTTCG
Found at i:13782642 original size:26 final size:26
Alignment explanation
Indices: 13782591--13782643 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13782581 CTGGTCTGAT
**
13782591 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
13782617 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
13782643 C
1 C
13782644 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:13783825 original size:45 final size:45
Alignment explanation
Indices: 13783776--13784063 Score: 213
Period size: 45 Copynumber: 6.4 Consensus size: 45
13783766 GTACGGGCAC
* *
13783776 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTAGTGCGGGTGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
* * * * * *
13783821 TTGCCTCGATCACCATCAGCACATGCT-GACCCTTGGTGCAGGCGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCC-TGGTGCGGGTGG
* ** * *
13783866 TTGCCTCGAGCACCATCGATACAAGCT-GACCCTCGGTGCGGGCT-C
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCT-GGTGCGGG-TGG
* * * * * * * * **
13783911 TTGCCTCGACCACTACCGGTAGAAGATGGCCCCTGGTGCAGGCAG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
* * * * * *
13783956 TTGCATTGAACACCATCGACACATGCTGGGCCATGGTGCGGGAGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
* * * * *
13784001 TTGCCTTGATCACCATCGGCACATGCTGGGGCCTGGTGCGAGTGG
1 TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
*
13784046 TTGCCTCGAACATCATCG
1 TTGCCTCGAACACCATCG
13784064 ATATGTGCTG
Statistics
Matches: 188, Mismatches: 50, Indels: 10
0.76 0.20 0.04
Matches are distributed among these distances:
44 5 0.03
45 178 0.95
46 5 0.03
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGG
Found at i:13783872 original size:90 final size:90
Alignment explanation
Indices: 13783771--13784064 Score: 263
Period size: 90 Copynumber: 3.3 Consensus size: 90
13783761 CTTTGGTACG
* * * *
13783771 GGCACTTGCCTCGACCACCATCGGCACAAGCTGGGCCCTAGTGCGGGTGGTTGCCTCGATCACCA
1 GGCAGTTGCCTCGAACACCATCGACACAAGCTGGGCCCTGGTGCGGGTGGTTGCCTCGATCACCA
* *
13783836 TCAGCACATGCTGACCCTTGGTGCA
66 TCGGCACATGCTGACCCCTGGTGCA
* * * * * *
13783861 GGCGGTTGCCTCGAGCACCATCGATACAAGCT-GACCCTCGGTGCGGGCT-CTTGCCTCGACCAC
1 GGCAGTTGCCTCGAACACCATCGACACAAGCTGGGCCCT-GGTGCGGG-TGGTTGCCTCGATCAC
* * * * * * *
13783924 TACCGGTAGAAGATGGCCCCTGGTGCA
64 CATCGGCACATGCTGACCCCTGGTGCA
* * * * * *
13783951 GGCAGTTGCATTGAACACCATCGACACATGCTGGGCCATGGTGCGGGAGGTTGCCTTGATCACCA
1 GGCAGTTGCCTCGAACACCATCGACACAAGCTGGGCCCTGGTGCGGGTGGTTGCCTCGATCACCA
***
13784016 TCGGCACATGCTGGGGCCTGGTGCGA
66 TCGGCACATGCTGACCCCTGGTGC-A
*
13784042 GTG--GTTGCCTCGAACATCATCGA
1 G-GCAGTTGCCTCGAACACCATCGA
13784065 TATGTGCTGG
Statistics
Matches: 157, Mismatches: 41, Indels: 12
0.75 0.20 0.06
Matches are distributed among these distances:
89 5 0.03
90 144 0.92
91 7 0.04
92 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.20
Consensus pattern (90 bp):
GGCAGTTGCCTCGAACACCATCGACACAAGCTGGGCCCTGGTGCGGGTGGTTGCCTCGATCACCA
TCGGCACATGCTGACCCCTGGTGCA
Found at i:13783970 original size:135 final size:135
Alignment explanation
Indices: 13783741--13784018 Score: 299
Period size: 135 Copynumber: 2.1 Consensus size: 135
13783731 ATGCATTGAC
* * * * * *
13783741 CACCATCGGTACAGGCTACCCTTTGGTACGGGCACTTGCCTCGACCACCATCGGCACAAGCTGGG
1 CACCATCGATACAAGCTACCCTTCGGTACGGGCACTTGCCTCGACCACCACCGGCACAAGATGGC
* ** * * * *
13783806 CCCTAGTGCGGGTGGTTGCCTCGATCACCATC-AGCACATGCTGACCCTTGGTGCAGGCGGTTGC
66 CCCTAGTGCAGGCAGTTGCATCGAACACCATCGA-CACATGCTGACCCATGGTGCAGGAGGTTGC
13783870 CTCGAG
130 CTCGAG
* * * * *
13783876 CACCATCGATACAAGCTGACCC-TCGGTGCGGGCTCTTGCCTCGACCACTACCGGTAGAAGATGG
1 CACCATCGATACAAGCT-ACCCTTCGGTACGGGCACTTGCCTCGACCACCACCGGCACAAGATGG
* * ** *
13783940 CCCCTGGTGCAGGCAGTTGCATTGAACACCATCGACACATGCTGGGCCATGGTGCGGGAGGTTGC
65 CCCCTAGTGCAGGCAGTTGCATCGAACACCATCGACACATGCTGACCCATGGTGCAGGAGGTTGC
* *
13784005 CTTGAT
130 CTCGAG
13784011 CACCATCG
1 CACCATCG
13784019 GCACATGCTG
Statistics
Matches: 116, Mismatches: 25, Indels: 4
0.80 0.17 0.03
Matches are distributed among these distances:
135 111 0.96
136 5 0.04
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.21
Consensus pattern (135 bp):
CACCATCGATACAAGCTACCCTTCGGTACGGGCACTTGCCTCGACCACCACCGGCACAAGATGGC
CCCTAGTGCAGGCAGTTGCATCGAACACCATCGACACATGCTGACCCATGGTGCAGGAGGTTGCC
TCGAG
Found at i:13790822 original size:31 final size:31
Alignment explanation
Indices: 13790784--13790845 Score: 115
Period size: 31 Copynumber: 2.0 Consensus size: 31
13790774 TGAACCCCCG
13790784 GCCCGAATCACGCCAAGGAACCAAAACGAAA
1 GCCCGAATCACGCCAAGGAACCAAAACGAAA
*
13790815 GCCCGAATCATGCCAAGGAACCAAAACGAAA
1 GCCCGAATCACGCCAAGGAACCAAAACGAAA
13790846 ATGGATCGTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.45, C:0.31, G:0.19, T:0.05
Consensus pattern (31 bp):
GCCCGAATCACGCCAAGGAACCAAAACGAAA
Found at i:13794658 original size:45 final size:45
Alignment explanation
Indices: 13794539--13794663 Score: 117
Period size: 45 Copynumber: 2.8 Consensus size: 45
13794529 GATTGAGTCA
* * * * *
13794539 AACACCATCAACACATGGTAGG-CCTCGGTACGGGCGGTTGCCTCG
1 AACACCATCGACACATGCTGGGCCCT-GGTGCAGGCGGTTGCCTCG
* * *
13794584 ATCACCATCGACACATGCTGGGCCCTGGTGTAGGCGGTTGTCTCG
1 AACACCATCGACACATGCTGGGCCCTGGTGCAGGCGGTTGCCTCG
** * * *
13794629 AACACCATCGGTACATGTTGGGTCTTGGTGCAGGC
1 AACACCATCGACACATGCTGGGCCCTGGTGCAGGC
13794664 ACTGCCTCGA
Statistics
Matches: 64, Mismatches: 15, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
45 61 0.95
46 3 0.05
ACGTcount: A:0.19, C:0.28, G:0.30, T:0.22
Consensus pattern (45 bp):
AACACCATCGACACATGCTGGGCCCTGGTGCAGGCGGTTGCCTCG
Found at i:13805889 original size:7 final size:7
Alignment explanation
Indices: 13805877--13805904 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
13805867 CTGAACCTTA
13805877 TCTCGAC
1 TCTCGAC
13805884 TCTCGAC
1 TCTCGAC
13805891 TCTCGAC
1 TCTCGAC
13805898 TCTCGAC
1 TCTCGAC
13805905 ACTCACATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.14, C:0.43, G:0.14, T:0.29
Consensus pattern (7 bp):
TCTCGAC
Found at i:13810354 original size:158 final size:158
Alignment explanation
Indices: 13809995--13810338 Score: 485
Period size: 158 Copynumber: 2.2 Consensus size: 158
13809985 GCGGAATGCA
* * * * *
13809995 CAAGCCAAGGATCGACCCAGTCCCCTTCTGTGTGCTATGGATCCCACTGCAGGTCCCTCGGTTTG
1 CAAGCCGAGGATCGACCCGGTCCCCCTCTGTGTGCTATGGATCCCACTGCAGGTCCCTCGGTCTA
* * * **
13810060 ACTGGGACTTAGACTGGAAATGAACTCCGTATGCCTAAGTCAACACATGAAATGAGCATGCGGAC
66 ACTGGGACTTAGACAGGAAATGAACTCCGAATGCCTAAGTCAACACACGAAATGAGCATGCAAAC
13810125 GTTGAGCCGGCCAGAGAGGCATCATGTG
131 GTTGAGCCGGCCAGAGAGGCATCATGTG
* * * * *
13810153 CAAGCTGAAGATTGACCCGGTCCCTCTCTGTGTGCTATGGATCCCGCTGC-GAGTCCCTCGGTCT
1 CAAGCCGAGGATCGACCCGGTCCCCCTCTGTGTGCTATGGATCCCACTGCAG-GTCCCTCGGTCT
* * * *
13810217 AACTAGGG-CTTAGACAGGGAATGAACTTCGAATGCCTAAGTCAACCCACGAAATGAGCGTGCAA
65 AACT-GGGACTTAGACAGGAAATGAACTCCGAATGCCTAAGTCAACACACGAAATGAGCATGCAA
13810281 ACGTTGAGCCGGCCAGAGAGGCATCATGTG
129 ACGTTGAGCCGGCCAGAGAGGCATCATGTG
13810311 CAAGCCGAGGATCGACCCGGTCCCCCTC
1 CAAGCCGAGGATCGACCCGGTCCCCCTC
13810339 AGCGTGCTGT
Statistics
Matches: 161, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
157 1 0.01
158 157 0.98
159 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.20
Consensus pattern (158 bp):
CAAGCCGAGGATCGACCCGGTCCCCCTCTGTGTGCTATGGATCCCACTGCAGGTCCCTCGGTCTA
ACTGGGACTTAGACAGGAAATGAACTCCGAATGCCTAAGTCAACACACGAAATGAGCATGCAAAC
GTTGAGCCGGCCAGAGAGGCATCATGTG
Found at i:13810429 original size:25 final size:26
Alignment explanation
Indices: 13810387--13810438 Score: 72
Period size: 25 Copynumber: 2.0 Consensus size: 26
13810377 CTGGTCTGAT
*
13810387 CTTAGACTGGGAATGAAC-TCCGTATG
1 CTTAGACTGAGAATGAACTTCC-TATG
13810413 CTTAGACT-AGAATGAACTTCCTATG
1 CTTAGACTGAGAATGAACTTCCTATG
13810438 C
1 C
13810439 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
25 13 0.54
26 11 0.46
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCCTATG
Found at i:13811749 original size:89 final size:90
Alignment explanation
Indices: 13811597--13811770 Score: 244
Period size: 89 Copynumber: 1.9 Consensus size: 90
13811587 ATTGGCACAA
* * * *
13811597 GCTGGGCCCTAGTGCGGGCGGTTGCCTCGATCACCATTGGCACATGCTAGGCCTTGGTGTGGGCC
1 GCTGGGCCCTAGTGCGGGCGGTTGCCTCGACCACCATCGGCACAAGATAGGCCTTGGTGTGGGCC
13811662 GTTGCCTCGAACACCATCGGTACAT
66 GTTGCCTCGAACACCATCGGTACAT
* * *
13811687 GCTGGGCCTTAGTGCGGG-TGTTGCCTCGACCACCATCGGCAGAAGAT-GGCCCTTGGTGTGGGC
1 GCTGGGCCCTAGTGCGGGCGGTTGCCTCGACCACCATCGGCACAAGATAGG-CCTTGGTGTGGGC
* *
13811750 GGTTGCCTCGAGCACCATCGG
65 CGTTGCCTCGAACACCATCGG
13811771 CACAAGCCGG
Statistics
Matches: 74, Mismatches: 9, Indels: 3
0.86 0.10 0.03
Matches are distributed among these distances:
88 2 0.03
89 55 0.74
90 17 0.23
ACGTcount: A:0.14, C:0.29, G:0.34, T:0.22
Consensus pattern (90 bp):
GCTGGGCCCTAGTGCGGGCGGTTGCCTCGACCACCATCGGCACAAGATAGGCCTTGGTGTGGGCC
GTTGCCTCGAACACCATCGGTACAT
Found at i:13811783 original size:45 final size:45
Alignment explanation
Indices: 13811585--13811784 Score: 199
Period size: 45 Copynumber: 4.5 Consensus size: 45
13811575 GCCTCAACCG
* *
13811585 CCATTGGCACAAGCTGGGCCC-TAGTGCGGGCGGTTGCCTCGATCA
1 CCATCGGCACAAGCT-GGCCCTTAGTGCGGGCGGTTGCCTCGAACA
* * * * *
13811630 CCATTGGCACATGCTAGG-CCTTGGTGTGGGCCGTTGCCTCGAACA
1 CCATCGGCACAAGCT-GGCCCTTAGTGCGGGCGGTTGCCTCGAACA
* * * * *
13811675 CCATCGGTACATGCTGGGCCTTAGTGCGGG-TGTTGCCTCGACCA
1 CCATCGGCACAAGCTGGCCCTTAGTGCGGGCGGTTGCCTCGAACA
* * * * *
13811719 CCATCGGCAGAAGATGGCCCTTGGTGTGGGCGGTTGCCTCGAGCA
1 CCATCGGCACAAGCTGGCCCTTAGTGCGGGCGGTTGCCTCGAACA
*
13811764 CCATCGGCACAAGCCGGCCCT
1 CCATCGGCACAAGCTGGCCCT
13811785 CGGTATGAGC
Statistics
Matches: 128, Mismatches: 24, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
44 39 0.30
45 89 0.70
ACGTcount: A:0.15, C:0.31, G:0.33, T:0.21
Consensus pattern (45 bp):
CCATCGGCACAAGCTGGCCCTTAGTGCGGGCGGTTGCCTCGAACA
Found at i:13815615 original size:26 final size:26
Alignment explanation
Indices: 13815579--13815629 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13815569 TGGTCTGATC
*
13815579 TTAGACTGGGAATGAACTCCGTATGG
1 TTAGACTGGGAATGAACTCCCTATGG
*
13815605 TTAGATTGGGAATGAACTCCCTATG
1 TTAGACTGGGAATGAACTCCCTATG
13815630 CCTAAGTCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCCTATGG
Found at i:13817115 original size:45 final size:45
Alignment explanation
Indices: 13816950--13817189 Score: 144
Period size: 45 Copynumber: 5.4 Consensus size: 45
13816940 TTGCTTTGAA
* * * *
13816950 CACCATCGGTACATGCTGGGCCTTGGTAC-GGTA-TTGCCTCGAC
1 CACCATTGGCACATGCTGGCCCTTGGTACGGGCACTTGCCTCGAC
* * * * * * ** * *
13816993 CACTATCGACAGAAGATGGCCCTTGGTGTGGGCGGC-TGTCTCGAC
1 CACCATTGGCACATGCTGGCCCTTGGTACGGGC-ACTTGCCTCGAC
** * * * * * *
13817038 CACCATCAGCACAAGCCGACCCTCGGTACGGGCTCTTACCTCGAC
1 CACCATTGGCACATGCTGGCCCTTGGTACGGGCACTTGCCTCGAC
* ** * * *
13817083 CACCATTGGCACATGCTGGCCCTTGGTGCGGGCGGTCGCATCGAA
1 CACCATTGGCACATGCTGGCCCTTGGTACGGGCACTTGCCTCGAC
** ** *
13817128 CACCATTGGCACGCGCTGGCCCTTGGTACGATCACATGCCTCGAC
1 CACCATTGGCACATGCTGGCCCTTGGTACGGGCACTTGCCTCGAC
*
13817173 CACCATTGGCACCTGCT
1 CACCATTGGCACATGCT
13817190 CACTTTCGGT
Statistics
Matches: 142, Mismatches: 51, Indels: 6
0.71 0.26 0.03
Matches are distributed among these distances:
43 20 0.14
44 3 0.02
45 119 0.84
ACGTcount: A:0.18, C:0.34, G:0.27, T:0.21
Consensus pattern (45 bp):
CACCATTGGCACATGCTGGCCCTTGGTACGGGCACTTGCCTCGAC
Found at i:13824976 original size:26 final size:26
Alignment explanation
Indices: 13824924--13824976 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
13824914 CTTGTCTGAT
**
13824924 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCCATG
*
13824950 CTTAGATTGGGAATGAACTCCCCATG
1 CTTAGACTGGGAATGAACTCCCCATG
13824976 C
1 C
13824977 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCCATG
Found at i:13825331 original size:349 final size:351
Alignment explanation
Indices: 13824921--13825655 Score: 940
Period size: 349 Copynumber: 2.1 Consensus size: 351
13824911 GATCTTGTCT
* * * *
13824921 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCCCATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCATACGCTTAGACTAGGAATGAACTCCCCATGCCTAAGTCAA
* * *
13824986 CCCAGGAAACGATCATGCGGGCACTGAGCAGGCCAGAGAGGCAGAATGCGTAAGTCGAGGATCGG
66 CCCAGGAAACGATCATGCGGGCACTGAGCAGGCCAGAGAGGCAGAATGCGAAAATCGAGGATCGA
* * * * *
13825051 CCTGGT-TCCCCTCTACGTGCTATCGATCTTGCTGCGGGTCCTGCTGTCACAACCCTC-AGTCC-
131 CCTGGTCT-CCCTCTACGTGCTACCGATCTTGATGCAGGTCCTACTGCCACAACCCTCGA-TCCG
* * * *
13825113 AGTCCGATCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAACCTATAAAATGAGCGGGTGGG
194 A-TCCGATCCTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGCGGGCGGG
* * * * * *
13825178 CACTACGCCGGCCAGAGAGGTAGGATGCGCAAGTC-GAT-ATCCCTCTCTGCGTGCTACCGATCC
258 CACTACGCCAGCCAGAGAGGCAGGACGCACAAGTCGGATCATCCCCCTCTACGTGCTACCGATCC
* *
13825241 TACTGCCTCAGACACCCTTGGTCCGGTCC
323 TACTGCCTCAGACACCCTCGGTCCAGTCC
* * ** *
13825270 GATCTTAAAGTGGGAATGAACTCCATACGCTTAGACTAGGAATGAACTCCTTATTCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCATACGCTTAGACTAGGAATGAACTCCCCATGCCTAAGTCAA
* * * * * *
13825335 CCCATGAAACGATCGTGTGGGTACTGAGCAGGCTAGAGAGGTAGAATGCGAAAATCGAGGATCGA
66 CCCAGGAAACGATCATGCGGGCACTGAGCAGGCCAGAGAGGCAGAATGCGAAAATCGAGGATCGA
* * *
13825400 CCTGGTCTCTCTCTGCGTGCTGCCGATCTTGATGCAGGTCCTACTGCCACAACCCTCGATCCGAT
131 CCTGGTCTCCCTCTACGTGCTACCGATCTTGATGCAGGTCCTACTGCCACAACCCTCGATCCGAT
* * *
13825465 CTGATCCTAGACTGGGAATGAACTCCGTATGCCTAAGTCAATCTACAAAATGAGCGGGCGGGCAC
196 CCGATCCTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGCGGGCGGGCAC
*
13825530 TACGCCAGCCAGAGAGGCAGGACGCACAAGTCGAGGATCGACCCAATCCCCCTCTACGTGCTATC
261 TACGCCAGCCAGAGAGGCAGGACGCACAAGTC--GGAT-----C-ATCCCCCTCTACGTGCTACC
*
13825595 GATCCTGCTGCCTCAGACACCCTCGGTCCAGTCC
318 GATCCTACTGCCTCAGACACCCTCGGTCCAGTCC
*
13825629 GATCTTAGACTAGGAATGAACTCCATA
1 GATCTTAGACTGGGAATGAACTCCATA
13825656 TGCCTAAGCC
Statistics
Matches: 327, Mismatches: 46, Indels: 16
0.84 0.12 0.04
Matches are distributed among these distances:
349 249 0.76
350 3 0.01
352 3 0.01
359 72 0.22
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (351 bp):
GATCTTAGACTGGGAATGAACTCCATACGCTTAGACTAGGAATGAACTCCCCATGCCTAAGTCAA
CCCAGGAAACGATCATGCGGGCACTGAGCAGGCCAGAGAGGCAGAATGCGAAAATCGAGGATCGA
CCTGGTCTCCCTCTACGTGCTACCGATCTTGATGCAGGTCCTACTGCCACAACCCTCGATCCGAT
CCGATCCTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCTACAAAATGAGCGGGCGGGCAC
TACGCCAGCCAGAGAGGCAGGACGCACAAGTCGGATCATCCCCCTCTACGTGCTACCGATCCTAC
TGCCTCAGACACCCTCGGTCCAGTCC
Found at i:13826681 original size:45 final size:45
Alignment explanation
Indices: 13826628--13826849 Score: 223
Period size: 45 Copynumber: 5.0 Consensus size: 45
13826618 ATGGCCTCTA
*
13826628 GTGTGGGCGGTTACGTCGAACACCATCGGCACATGCTGGGCCTTG
1 GTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCTTG
* ** * * * *
13826673 GTGCGGGCGGTTTTCTCGATCACCATCGACACATGCTGGGCCCTA
1 GTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCTTG
* *
13826718 GTGTGGGCGGTTACCTCAAACACCATCGGTACATGCTGGGCCTTG
1 GTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCTTG
* * * * * * * **
13826763 GTATGGGC-GTTGCCTCGACCACCATCGGTAGAAGATGACCCTTG
1 GTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCTTG
* * * *
13826807 GTGTGGGCAGTTGCCTCGAGCACCATCGGCACAAGCT-GGCCTT
1 GTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCTT
13826850 CGATACGGGC
Statistics
Matches: 143, Mismatches: 33, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
44 39 0.27
45 104 0.73
ACGTcount: A:0.17, C:0.28, G:0.32, T:0.23
Consensus pattern (45 bp):
GTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCTTG
Found at i:13826771 original size:90 final size:90
Alignment explanation
Indices: 13826598--13826789 Score: 253
Period size: 90 Copynumber: 2.1 Consensus size: 90
13826588 GGCTCTTGGT
* * * * * *
13826598 TCGACCACCACCGACAGAAGAT-GGCCTCTAGTGTGGGCGGTTACGTCGAACACCATCGGCACAT
1 TCGACCACCATCGACACATGCTGGGCCTCTAGTGTGGGCGGTTACCTCAAACACCATCGGCACAT
* **
13826662 GCTGGGCCTTGGTGCGGGCGGTTTTC
66 GCTGGGCCTTGGTACGGGC-GTTGCC
* *
13826688 TCGATCACCATCGACACATGCTGGGCC-CTAGTGTGGGCGGTTACCTCAAACACCATCGGTACAT
1 TCGACCACCATCGACACATGCTGGGCCTCTAGTGTGGGCGGTTACCTCAAACACCATCGGCACAT
*
13826752 GCTGGGCCTTGGTATGGGCGTTGCC
66 GCTGGGCCTTGGTACGGGCGTTGCC
13826777 TCGACCACCATCG
1 TCGACCACCATCG
13826790 GTAGAAGATG
Statistics
Matches: 88, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
89 16 0.18
90 68 0.77
91 4 0.05
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (90 bp):
TCGACCACCATCGACACATGCTGGGCCTCTAGTGTGGGCGGTTACCTCAAACACCATCGGCACAT
GCTGGGCCTTGGTACGGGCGTTGCC
Found at i:13835408 original size:26 final size:26
Alignment explanation
Indices: 13835369--13835420 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
13835359 TTGGTCTGAT
*
13835369 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCCTATG
*
13835395 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGAGAATGAACTCCCTATG
13835421 ACTAAGTCAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCCTATG
Found at i:13840677 original size:24 final size:24
Alignment explanation
Indices: 13840649--13840696 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
13840639 TACGGTGGCT
13840649 AACGGCAACGTTAGGGAGTCCGGA
1 AACGGCAACGTTAGGGAGTCCGGA
*
13840673 AACGGCAACGTTAGGGAGTTCGGA
1 AACGGCAACGTTAGGGAGTCCGGA
13840697 GACGTCAATG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.29, C:0.19, G:0.38, T:0.15
Consensus pattern (24 bp):
AACGGCAACGTTAGGGAGTCCGGA
Found at i:13846749 original size:45 final size:45
Alignment explanation
Indices: 13846700--13846820 Score: 145
Period size: 45 Copynumber: 2.7 Consensus size: 45
13846690 GTACGGGCAC
* *
13846700 TTGCCTCGACCACCATCGACACAAGCTGGGCCC-TAGTGTGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCT-GACCCTTAGTGTGGGTGG
* * * * *
13846745 TTGCCTTGATCACCATTGGCACATGCTGACCCTTGGTGTGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGACCCTTAGTGTGGGTGG
* *
13846790 TTGCCTCGAGCACCATCGGCACAAGCCGACC
1 TTGCCTCGACCACCATCGGCACAAGCTGACC
13846821 TTCGGTGCGG
Statistics
Matches: 63, Mismatches: 12, Indels: 2
0.82 0.16 0.03
Matches are distributed among these distances:
44 4 0.06
45 59 0.94
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGACCCTTAGTGTGGGTGG
Found at i:13846894 original size:45 final size:45
Alignment explanation
Indices: 13846835--13847047 Score: 214
Period size: 45 Copynumber: 4.8 Consensus size: 45
13846825 GTGCGGGCTC
* * *
13846835 GGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGGGCCTT
1 GGTGCAGGCAGTTGCCTCGAACACCATCGGCACATGCTGGGCCTT
*
13846880 GGTGCAGGCAGTTGCCTC-AATCACCATCAGCACATGCTGGGCCTT
1 GGTGCAGGCAGTTGCCTCGAA-CACCATCGGCACATGCTGGGCCTT
* * ** *
13846925 GGTGCGGGCGGTTGCCTCGAACACCATCGATACGTGCTGGGCCTT
1 GGTGCAGGCAGTTGCCTCGAACACCATCGGCACATGCTGGGCCTT
* * * * * * *
13846970 GGTACAGGCA-TTGCCTCGACCACCATCGGTAAAAGATGGCCCTT
1 GGTGCAGGCAGTTGCCTCGAACACCATCGGCACATGCTGGGCCTT
** * * *
13847014 GGTGTGGGCGGTTGCCTCGAGCACCATCGACACA
1 GGTGCAGGCAGTTGCCTCGAACACCATCGGCACA
13847048 AGCCGACCCT
Statistics
Matches: 137, Mismatches: 28, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
44 35 0.26
45 100 0.73
46 2 0.01
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (45 bp):
GGTGCAGGCAGTTGCCTCGAACACCATCGGCACATGCTGGGCCTT
Found at i:13847029 original size:89 final size:90
Alignment explanation
Indices: 13846835--13847047 Score: 284
Period size: 89 Copynumber: 2.4 Consensus size: 90
13846825 GTGCGGGCTC
* * *
13846835 GGTGCGGGCGGTTGCATCGAACACCATCGGCACATGCTGGGCCTTGGTGCAGGCAGTTGCCTCAA
1 GGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGGGCCTTGGTACAGGCAGTTGCCTCAA
* * * * *
13846900 TCACCATCAGCACATGCTGGGCCTT
66 CCACCATCAGCAAAAGATGGCCCTT
* * *
13846925 GGTGCGGGCGGTTGCCTCGAACACCATCGATACGTGCTGGGCCTTGGTACAGGCA-TTGCCTCGA
1 GGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGGGCCTTGGTACAGGCAGTTGCCTCAA
* *
13846989 CCACCATCGGTAAAAGATGGCCCTT
66 CCACCATCAGCAAAAGATGGCCCTT
* *
13847014 GGTGTGGGCGGTTGCCTCGAGCACCATCGACACA
1 GGTGCGGGCGGTTGCCTCGAACACCATCGACACA
13847048 AGCCGACCCT
Statistics
Matches: 106, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
89 56 0.53
90 50 0.47
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (90 bp):
GGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGGGCCTTGGTACAGGCAGTTGCCTCAA
CCACCATCAGCAAAAGATGGCCCTT
Found at i:13849186 original size:26 final size:26
Alignment explanation
Indices: 13849148--13849200 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13849138 CTAGTCCGAT
13849148 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
13849174 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCATATG
13849200 C
1 C
13849201 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:13850380 original size:45 final size:45
Alignment explanation
Indices: 13850331--13850445 Score: 115
Period size: 45 Copynumber: 2.6 Consensus size: 45
13850321 GTATGGGCAC
* *
13850331 TTGCCTCGACCACCGTCGGCACAAGCTAGGCCC-TAGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCT-GACCCTTAGTGTGGGCGG
* ** * * *
13850376 TTGCCTTGATAACCATTGGCACATGCTGACCCTTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGACCCTTAGTGTGGGCGG
* * *
13850421 TTGCCTCCAGCAACATCGGCACAAG
1 TTGCCTCGACCACCATCGGCACAAG
13850446 TCAACCCTCG
Statistics
Matches: 54, Mismatches: 15, Indels: 2
0.76 0.21 0.03
Matches are distributed among these distances:
44 4 0.07
45 50 0.93
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGACCCTTAGTGTGGGCGG
Found at i:13851035 original size:90 final size:90
Alignment explanation
Indices: 13850939--13851162 Score: 200
Period size: 90 Copynumber: 2.5 Consensus size: 90
13850929 ACAAGCCAAC
* * * * * *
13850939 CCTTGGTGTGAGCTCTTGCCTCGACCACCACCGATAGAAGATGGCCCCTAGTGCAGGCGGTTGCG
1 CCTTGGTGCGAGCGCTTGCCTCGACCACCACCGACACAAGATGGCCCCTAGTACAGGCGGTTGCC
13851004 TCGAACACCATCGGTACATGCTGGG
66 TCGAACACCATCGGTACATGCTGGG
* * * * * * * * * * * * *
13851029 CTTTGGTGCGGGCGGTTGCCTCGATCGCCATCGGCACATGTTGGGCCTTGGTACGGGCGGTTGCC
1 CCTTGGTGCGAGCGCTTGCCTCGACCACCACCGACACAAGATGGCCCCTAGTACAGGCGGTTGCC
*
13851094 TCGAACACCATCGGTACGTGCTGGG
66 TCGAACACCATCGGTACATGCTGGG
* * * * *
13851119 CCTTGGTGCG-G-GCATTACCTCAACCACCATCGGCAGAAGATGGC
1 CCTTGGTGCGAGCGC-TTGCCTCGACCACCACCGACACAAGATGGC
13851163 GCTTGGTGTG
Statistics
Matches: 103, Mismatches: 30, Indels: 3
0.76 0.22 0.02
Matches are distributed among these distances:
88 1 0.01
89 23 0.22
90 79 0.77
ACGTcount: A:0.17, C:0.29, G:0.32, T:0.22
Consensus pattern (90 bp):
CCTTGGTGCGAGCGCTTGCCTCGACCACCACCGACACAAGATGGCCCCTAGTACAGGCGGTTGCC
TCGAACACCATCGGTACATGCTGGG
Found at i:13851045 original size:45 final size:45
Alignment explanation
Indices: 13850989--13851193 Score: 218
Period size: 45 Copynumber: 4.6 Consensus size: 45
13850979 ATGGCCCCTA
* * *
13850989 GTGCAGGCGGTTGCGTCGAACACCATCGGTACATGCTGGGCTTTG
1 GTGCGGGCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCTTG
* * * *
13851034 GTGCGGGCGGTTGCCTCGATCGCCATCGGCACATGTTGGGCCTTG
1 GTGCGGGCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCTTG
* *
13851079 GTACGGGCGGTTGCCTCGAACACCATCGGTACGTGCTGGGCCTTG
1 GTGCGGGCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCTTG
* * * * * *
13851124 GTGCGGGC-ATTACCTC-AACCACCATCGGCAGAAGAT-GGCGCTTG
1 GTGCGGGCGGTTGCCTCGAA-CACCATCGGTACATGCTGGGC-CTTG
* *
13851168 GTGTGGGCGGTTGCCTCGAGCACCAT
1 GTGCGGGCGGTTGCCTCGAACACCAT
13851194 TGGCACAAGT
Statistics
Matches: 131, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
43 5 0.04
44 29 0.22
45 96 0.73
46 1 0.01
ACGTcount: A:0.15, C:0.28, G:0.35, T:0.22
Consensus pattern (45 bp):
GTGCGGGCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCTTG
Found at i:13851193 original size:89 final size:90
Alignment explanation
Indices: 13850994--13851193 Score: 251
Period size: 89 Copynumber: 2.2 Consensus size: 90
13850984 CCCTAGTGCA
* * * * * * *
13850994 GGCGGTTGCGTCGAACACCATCGGTACATGCTGGGCTTTGGTGCGGGCGGTTGCCTCGATCGCCA
1 GGCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCTTGGTGCGGGCGATTACCTCAACCACCA
* *
13851059 TCGGCACATGTTGGGCCTTGGTACG
66 TCGGCACAAGATGGGCCTTGGTACG
*
13851084 GGCGGTTGCCTCGAACACCATCGGTACGTGCTGGGCCTTGGTGCGGGC-ATTACCTCAACCACCA
1 GGCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCTTGGTGCGGGCGATTACCTCAACCACCA
* **
13851148 TCGGCAGAAGAT-GGCGCTTGGTGTG
66 TCGGCACAAGATGGGC-CTTGGTACG
*
13851173 GGCGGTTGCCTCGAGCACCAT
1 GGCGGTTGCCTCGAACACCAT
13851194 TGGCACAAGT
Statistics
Matches: 95, Mismatches: 14, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
88 3 0.03
89 47 0.49
90 45 0.47
ACGTcount: A:0.14, C:0.28, G:0.35, T:0.23
Consensus pattern (90 bp):
GGCGGTTGCCTCGAACACCATCGGTACATGCTGGGCCTTGGTGCGGGCGATTACCTCAACCACCA
TCGGCACAAGATGGGCCTTGGTACG
Found at i:13852238 original size:89 final size:91
Alignment explanation
Indices: 13852012--13852242 Score: 218
Period size: 91 Copynumber: 2.6 Consensus size: 91
13852002 CGGGTTCTTA
* * * *
13852012 CCTCGACCACCA-CTGATAGAAGATGGCCCTTGGTGCGGGCGGTTGCATCGAACACCATCGGCAC
1 CCTCGACCACCATC-GGTAGAAGATGGCCCTTGGTGAGGGCGGTTACCTCGAACACCATCGGCAC
* *
13852076 ATACAGGGTCCTCAGTGCGGGCAGTTG
65 ATACAGGGACCTCAGTGCGGGCAGTTC
* * * * * * * *
13852103 CCTCGATCACCATCGGCACATGCTGGGCCC-TGGTGAGGGCGATTACCTTGAACACCATCGGTAC
1 CCTCGACCACCATCGGTAGAAGAT-GGCCCTTGGTGAGGGCGGTTACCTCGAACACCATCGGCAC
* * * **
13852167 GTGC-TGGACCTTGGTGCGGG-AGTTC
65 ATACAGGGACCTCAGTGCGGGCAGTTC
* * *
13852192 CCTCGACCATCATCGGTAGAAGATGGCCCTTGGTGTGGGTGGTTACCTCGA
1 CCTCGACCACCATCGGTAGAAGATGGCCCTTGGTGAGGGCGGTTACCTCGA
13852243 GCAACATTGG
Statistics
Matches: 108, Mismatches: 29, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
88 5 0.05
89 39 0.36
90 12 0.11
91 46 0.43
92 6 0.06
ACGTcount: A:0.19, C:0.29, G:0.31, T:0.22
Consensus pattern (91 bp):
CCTCGACCACCATCGGTAGAAGATGGCCCTTGGTGAGGGCGGTTACCTCGAACACCATCGGCACA
TACAGGGACCTCAGTGCGGGCAGTTC
Found at i:13854024 original size:45 final size:45
Alignment explanation
Indices: 13853946--13854256 Score: 261
Period size: 45 Copynumber: 6.9 Consensus size: 45
13853936 GGGCCGAGAT
* * *
13853946 GGCCCTTGGTGCGAGCGGTTACGTCGAACACCATCAGCATACGCTG
1 GGCCC-TGGTGCGGGCGGTTACCTCGAACACCATCAGCACACGCTG
* * * * * * * * * *
13853992 GGCCCTAGTGCAGGCAGTTGCCTTGAGCACCATCAACAGAAGAT-
1 GGCCCTGGTGCGGGCGGTTACCTCGAACACCATCAGCACACGCTG
*
13854036 GGCCCTTGGTACGGGCGGTTACCTCGAACACCATCAGCACACGCTG
1 GGCCC-TGGTGCGGGCGGTTACCTCGAACACCATCAGCACACGCTG
*
13854082 GGCCCTGGTGCTGGCGGTTACCTC-AATCACCATC-GACACACGCTG
1 GGCCCTGGTGCGGGCGGTTACCTCGAA-CACCATCAG-CACACGCTG
* * * * * *
13854127 GGCCCTCGTGCGGGCGGTTACCTCGACCACCATC-GATAGAAGATG
1 GGCCCTGGTGCGGGCGGTTACCTCGAACACCATCAG-CACACGCTG
* * * * * *
13854172 GTCCTTGGTGTGGGCGGTTACATCGAACACCATCGGCACACGCTA
1 GGCCCTGGTGCGGGCGGTTACCTCGAACACCATCAGCACACGCTG
* * * * *
13854217 GGCCCTGGTGCGAGCGATTGCCTCGATCACCATCAACACA
1 GGCCCTGGTGCGGGCGGTTACCTCGAACACCATCAGCACA
13854257 TGTTGGTCGA
Statistics
Matches: 206, Mismatches: 53, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
44 8 0.04
45 186 0.90
46 12 0.06
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (45 bp):
GGCCCTGGTGCGGGCGGTTACCTCGAACACCATCAGCACACGCTG
Found at i:13854198 original size:135 final size:134
Alignment explanation
Indices: 13853946--13854256 Score: 383
Period size: 135 Copynumber: 2.3 Consensus size: 134
13853936 GGGCCGAGAT
* *
13853946 GGCCCTTGGTGCGAGCGGTTACGTCGAA-CACCATCAGCATACGCTGGGCCCTAGTGCAGGCAGT
1 GGCCC-TGGTGCGAGCGGTTACCTC-AATCACCATCA-CACACGCTGGGCCCTAGTGCAGGCAGT
* * * *
13854010 TGCCTTGAGCACCATCAACAGAAGATGGCCCTTGGTACGGGCGGTTACCTCGAACACCATCAGCA
63 TACCTCGACCACCATCAACAGAAGATGGCCCTTGGTACGGGCGGTTACATCGAACACCATCAGCA
*
13854075 CACGCTG
128 CACGCTA
* * *
13854082 GGCCCTGGTGCTG-GCGGTTACCTCAATCACCATCGACACACGCTGGGCCCTCGTGCGGGCGGTT
1 GGCCCTGGTGC-GAGCGGTTACCTCAATCACCATC-ACACACGCTGGGCCCTAGTGCAGGCAGTT
* * * ** *
13854146 ACCTCGACCACCATCGATAGAAGATGGTCCTTGGTGTGGGCGGTTACATCGAACACCATCGGCAC
64 ACCTCGACCACCATCAACAGAAGATGGCCCTTGGTACGGGCGGTTACATCGAACACCATCAGCAC
13854211 ACGCTA
129 ACGCTA
* * *
13854217 GGCCCTGGTGCGAGCGATTGCCTCGATCACCATCAACACA
1 GGCCCTGGTGCGAGCGGTTACCTCAATCACCATC-ACACA
13854257 TGTTGGTCGA
Statistics
Matches: 151, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
134 3 0.02
135 141 0.93
136 7 0.05
ACGTcount: A:0.21, C:0.32, G:0.28, T:0.19
Consensus pattern (134 bp):
GGCCCTGGTGCGAGCGGTTACCTCAATCACCATCACACACGCTGGGCCCTAGTGCAGGCAGTTAC
CTCGACCACCATCAACAGAAGATGGCCCTTGGTACGGGCGGTTACATCGAACACCATCAGCACAC
GCTA
Found at i:13854280 original size:24 final size:24
Alignment explanation
Indices: 13854239--13854286 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
13854229 AGCGATTGCC
*
13854239 TCGATCACCATCAACACATGTTGG
1 TCGATCACCATCAACACACGTTGG
**
13854263 TCGATCACCATCGGCACACGTTGG
1 TCGATCACCATCAACACACGTTGG
13854287 GCCCTGGTGC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.25, C:0.31, G:0.21, T:0.23
Consensus pattern (24 bp):
TCGATCACCATCAACACACGTTGG
Found at i:13854385 original size:45 final size:45
Alignment explanation
Indices: 13854263--13854422 Score: 128
Period size: 45 Copynumber: 3.6 Consensus size: 45
13854253 CACATGTTGG
* * ** * *
13854263 TCGATCACCATCGGCACACGTTGGGCCCTGGTGCGGGCGGTTGCC
1 TCGAGCACCATCGGCACACGCTGGGTGCTGGTGCGGGTGCTTGCC
* * * * ***
13854308 TCGAACACTATCGGTACAAGCT-GACCCTTGGTGCGGGCT-CTTGCC
1 TCGAGCACCATCGGCACACGCTGGGTGC-TGGTGCGGG-TGCTTGCC
*
13854353 TC-AGCCACCATCGGCACACGCTGGGTGCTGGTGCGGGTGGTTGCC
1 TCGAG-CACCATCGGCACACGCTGGGTGCTGGTGCGGGTGCTTGCC
* *
13854398 TCGAGCACCATTGGCACATGCTGGG
1 TCGAGCACCATCGGCACACGCTGGG
13854423 CCCGGATGCT
Statistics
Matches: 91, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
44 6 0.07
45 81 0.89
46 4 0.04
ACGTcount: A:0.14, C:0.31, G:0.33, T:0.21
Consensus pattern (45 bp):
TCGAGCACCATCGGCACACGCTGGGTGCTGGTGCGGGTGCTTGCC
Found at i:13854417 original size:159 final size:159
Alignment explanation
Indices: 13854107--13854408 Score: 372
Period size: 159 Copynumber: 1.9 Consensus size: 159
13854097 GGTTACCTCA
* *
13854107 ATCACCATCGACACACGCTGGGCCCTCGTGCGGGCGGTTACCTCGACCACCATCGATAGAAGATG
1 ATCACCATCGACACACGCTGGGCCCTCGTGCGGGCGGTTACCTCGAACACCATCGATACAAGATG
** * *
13854172 GTCCTTGGTGTGGGCGGTTACATCGAACACCATCGGCACACGCTAGGCCCTGGTGCGAGCGATTG
66 ACCCTTGGTGCGGGCGCTTACATCGAACACCATCGGCACACGCTAGGCCCTGGTGCGAGCGATTG
*
13854237 CCTCGATCACCATCAACACATGTTGGTCG
131 CCTCGAGCACCATCAACACATGTTGGTCG
* * * * * * *
13854266 ATCACCATCGGCACACGTTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACTATCGGTACAAGCTG
1 ATCACCATCGACACACGCTGGGCCCTCGTGCGGGCGGTTACCTCGAACACCATCGATACAAGATG
* * * * * ** * * *
13854331 ACCCTTGGTGCGGGCTCTTGCCTC-AGCCACCATCGGCACACGCTGGGTGCTGGTGCGGGTGGTT
66 ACCCTTGGTGCGGGCGCTTACATCGA-ACACCATCGGCACACGCTAGGCCCTGGTGCGAGCGATT
13854395 GCCTCGAGCACCAT
130 GCCTCGAGCACCAT
13854409 TGGCACATGC
Statistics
Matches: 118, Mismatches: 24, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
158 1 0.01
159 117 0.99
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.21
Consensus pattern (159 bp):
ATCACCATCGACACACGCTGGGCCCTCGTGCGGGCGGTTACCTCGAACACCATCGATACAAGATG
ACCCTTGGTGCGGGCGCTTACATCGAACACCATCGGCACACGCTAGGCCCTGGTGCGAGCGATTG
CCTCGAGCACCATCAACACATGTTGGTCG
Found at i:13854442 original size:90 final size:90
Alignment explanation
Indices: 13854268--13854519 Score: 262
Period size: 90 Copynumber: 2.8 Consensus size: 90
13854258 GTTGGTCGAT
* * * *
13854268 CACCATCGGCACACGTTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACTATCGGTACAAGCT-GA
1 CACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGTACATGCTGGG
* * *
13854332 CCCTTGGTGCGGGCTCTTGCCTC-AGC
66 CCC-TGGTGCGGACTCTTGCCACGA-A
** * * * *
13854358 CACCATCGGCACACGCTGGGTGCTGGTGCGGGTGGTTGCCTCGAGCACCATTGGCACATGCTGGG
1 CACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGTACATGCTGGG
*
13854423 CCC-GGATGCTGACAT-TTGCCACGAA
66 CCCTGG-TGCGGAC-TCTTGCCACGAA
* * * *
13854448 CACCATCGGCACACACTGGGCCCTGTTGCGGGCGGTTACCT-TAATCACCATCGGTACATGCTGG
1 CACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGTACATGCTGG
13854512 GCCCTGGT
65 GCCCTGGT
13854520 ATGAGTGGTT
Statistics
Matches: 132, Mismatches: 24, Indels: 12
0.79 0.14 0.07
Matches are distributed among these distances:
89 3 0.02
90 121 0.92
91 8 0.06
ACGTcount: A:0.16, C:0.32, G:0.31, T:0.21
Consensus pattern (90 bp):
CACCATCGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGTACATGCTGGG
CCCTGGTGCGGACTCTTGCCACGAA
Found at i:13854497 original size:45 final size:45
Alignment explanation
Indices: 13854445--13854553 Score: 121
Period size: 45 Copynumber: 2.4 Consensus size: 45
13854435 CATTTGCCAC
* * *
13854445 GAACACCATCGGCACACACTGGGCCCTGTTGCGGGCGGTTACCTT
1 GAACACCATCGGCACACACTGGGCCCTGGTACGAGCGGTTACCTT
* ** * * *
13854490 -AATCACCATCGGTACATGCTGGGCCCTGGTATGAGTGGTTTCCTT
1 GAA-CACCATCGGCACACACTGGGCCCTGGTACGAGCGGTTACCTT
13854535 GAACACCATCGGCACACAC
1 GAACACCATCGGCACACAC
13854554 AAGGCCTTGG
Statistics
Matches: 50, Mismatches: 12, Indels: 4
0.76 0.18 0.06
Matches are distributed among these distances:
44 2 0.04
45 46 0.92
46 2 0.04
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.22
Consensus pattern (45 bp):
GAACACCATCGGCACACACTGGGCCCTGGTACGAGCGGTTACCTT
Found at i:13863046 original size:345 final size:344
Alignment explanation
Indices: 13862479--13863104 Score: 782
Period size: 345 Copynumber: 1.8 Consensus size: 344
13862469 GATCAACCCA
* **
13862479 GTCCCCCTCTGCGTGCTGCTACCAATCCGGCTGCCTGTTCTATCTTAGACTGGAAATGAACTCTG
1 GTCCCCCTCTGCGTGCTGCTACCAATCCCGCTGCCTGTTCTATCTTAGACTGGAAATGAACTCCA
* * * **
13862544 TATGCTTAGACTAGGAATGAACTTCGTTTGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCT
66 TATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCAAGAAACGAGCATGCGGGCACT
* * *
13862609 CAGTCGACCGGAGAGGCATAATGCACAAGCCGAGGATCTATCTAGTCCCCCTTTACGTGCTACCG
131 CAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCTATCCAGTCCCCCTTTACGTGCTA-CG
* * *
13862674 ATCCCGCTACCGGTTCACCTGCCACAACCCTCGGTCCGA-CTGAGGCTTAGACATGGAATGAACT
195 ATCCCGCTACCGGTTCACCTACCACAACCCTCGATCC-ATCTGAGGCTTAGAAATGGAATGAACT
* *
13862738 TCGTATGCCTAAGCCAACCCACAAAATGACTGTGCGGGTGCTTAGCCGACCGGAGAGGCAAGATG
259 CCATATGCCTAAGCCAACCCACAAAATGACTGTGCGGGTGCTTAGCCGACCGGAGAGGCAAGATG
13862803 CGCAAGCTGGGGATCGGTCTG
324 CGCAAGCTGGGGATCGGTCTG
* * * *
13862824 GTCCCCCTCTGCGTGCTGCTGCCGATCCCGCTGTC-GATT-TAATCTTAGACTGGGAATGAACTC
1 GTCCCCCTCTGCGTGCTGCTACCAATCCCGCTGCCTG-TTCT-ATCTTAGACTGGAAATGAACTC
* *
13862887 CATATGCTTAGATTGGGAATGAAC-TCTGTATGCCTAAGTCAACCCAAGAAACGAGCATGCGGGC
64 CATATGCTTAGACTAGGAATGAACTTC-GTATGCCTAAGTCAACCCAAGAAACGAGCATGCGGGC
* ** * * * *
13862951 ACTGAGCCGACCGAAGAGGCATAATGCGTAAGCCGAGGAT-TGGTCCGGT-CTCCTTCTACGTGT
128 ACTCAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCT-ATCCAGTCCCCCTT-TACGTGC
* * * * * *
13863014 TGA-GAATCTCGCTGCTGG-TCGAGCTACCACAACCCTCGATCCATCTGGGGCTTAGAAATTGAA
191 T-ACG-ATCCCGCTACCGGTTC-ACCTACCACAACCCTCGATCCATCTGAGGCTTAGAAATGGAA
*
13863077 TGAACTCCATATGCCTAAGTCAACCCAC
253 TGAACTCCATATGCCTAAGCCAACCCAC
13863105 GAAACGAGCG
Statistics
Matches: 236, Mismatches: 36, Indels: 18
0.81 0.12 0.06
Matches are distributed among these distances:
344 14 0.06
345 221 0.94
346 1 0.00
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (344 bp):
GTCCCCCTCTGCGTGCTGCTACCAATCCCGCTGCCTGTTCTATCTTAGACTGGAAATGAACTCCA
TATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCAAGAAACGAGCATGCGGGCACT
CAGCCGACCGAAGAGGCATAATGCACAAGCCGAGGATCTATCCAGTCCCCCTTTACGTGCTACGA
TCCCGCTACCGGTTCACCTACCACAACCCTCGATCCATCTGAGGCTTAGAAATGGAATGAACTCC
ATATGCCTAAGCCAACCCACAAAATGACTGTGCGGGTGCTTAGCCGACCGGAGAGGCAAGATGCG
CAAGCTGGGGATCGGTCTG
Found at i:13864012 original size:45 final size:45
Alignment explanation
Indices: 13863963--13864390 Score: 236
Period size: 45 Copynumber: 9.5 Consensus size: 45
13863953 GTGCGAGCGG
* * *
13863963 TTGCCTCGACCACCATCGGTAGA-AGATGGGCCCTGGTACGGGTGA
1 TTGCCTCGACCACCATCGGCACACA-ATGGGCCCTGGTACAGGTGA
* * * * *
13864008 TTGCCTCGAGCACCATCGGCACACATTGGGCCCTGGTGCATGTGG
1 TTGCCTCGACCACCATCGGCACACAATGGGCCCTGGTACAGGTGA
* * * * *** * *
13864053 TTGCCTCGATCACCATCGTCACACACTGAGCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACACAATGGGCCCTGGTACAGGTGA
* * * * * *
13864098 TTGCCTCGATCACCATCGGCACTCACTGGGCCCTGGTGCATGTGG
1 TTGCCTCGACCACCATCGGCACACAATGGGCCCTGGTACAGGTGA
* * * * *** * *
13864143 TTGCCTCGATCACCATCGTCACACACTGAGCCCTGGTGTGGGCGG
1 TTGCCTCGACCACCATCGGCACACAATGGGCCCTGGTACAGGTGA
* * * * **
13864188 TTGCCTCGATCACCATCGGCACTCACTGGGCCCTGGTGC-GGACA
1 TTGCCTCGACCACCATCGGCACACAATGGGCCCTGGTACAGGTGA
* * ** * * * *
13864232 GTTGCCTCGAACACCATAGGCACACGCTGGGCCCTGGTGCGGGCGG
1 -TTGCCTCGACCACCATCGGCACACAATGGGCCCTGGTACAGGTGA
* ** * *
13864278 TTGCCTCGAGCACCATCGGCACACGTTGGGCCCAGGTGC-GG-GCA
1 TTGCCTCGACCACCATCGGCACACAATGGGCCCTGGTACAGGTG-A
* * * * ** *
13864322 GTTGCCTCGATCACCATCGGCATACACTGGGCCTTGGTGTAGG-CA
1 -TTGCCTCGACCACCATCGGCACACAATGGGCCCTGGTACAGGTGA
* *
13864367 GTTACCTCGAGCACCATCGGCACA
1 -TTGCCTCGACCACCATCGGCACA
13864391 TGTCGATCGA
Statistics
Matches: 317, Mismatches: 60, Indels: 12
0.81 0.15 0.03
Matches are distributed among these distances:
43 1 0.00
44 4 0.01
45 307 0.97
46 5 0.02
ACGTcount: A:0.17, C:0.32, G:0.30, T:0.21
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACACAATGGGCCCTGGTACAGGTGA
Found at i:13864041 original size:135 final size:132
Alignment explanation
Indices: 13863901--13864390 Score: 419
Period size: 135 Copynumber: 3.6 Consensus size: 132
13863891 GCACAAGCTA
* * * ***
13863901 GGCCCTAGTATGAGTGGTTGCCTTGATCACCATTGGCATGTTTTGGCCCTTGGTGCGAGCGGTTG
1 GGCCCT-GTGTGAGTGGTTGCCTCGATCACCATCGGCATAAATTGGCCC-TGGTGCG-GCGGTTG
* * * * * *
13863966 CCTCGACCACCATCGGTAGAAGATGGGCCCTGGTACGGGTGATTGCCTCGAGCACCATCGGCACA
63 CCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAGCACCATCGGCACA
13864031 CATTG
128 CATTG
* * * * *
13864036 GGCCCTG-GTGCATGTGGTTGCCTCGATCACCATCGTCACACACTGAGCCCTGGTGTGGGCGGTT
1 GGCCCTGTGTG-A-GTGGTTGCCTCGATCACCATCGGCATAAATTG-GCCCTGGTG-CGGCGGTT
* * ** * *
13864100 GCCTCGATCACCATCGGCACTCA-CTGGGCCCTGGTGCATGTGGTTGCCTCGATCACCATCGTCA
62 GCCTCGAACACCATCGGCAC-AAGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAGCACCATCGGCA
*
13864164 CACACTG
126 CACATTG
* * * * * * *
13864171 AGCCCTGGTGTGGGCGGTTGCCTCGATCACCATCGGCACTCACTGGGCCCTGGTGCGGACAGTTG
1 GGCCCT-GTGTGAGTGGTTGCCTCGATCACCATCGGCA-TAAATTGGCCCTGGTGCGG-CGGTTG
* * *
13864236 CCTCGAACACCATAGGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACA
63 CCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAGCACCATCGGCACA
*
13864301 CGTTG
128 CATTG
* * * * * * * *
13864306 GGCCCAG-GTGCGGGCAGTTGCCTCGATCACCATCGGCATACACTGGGCCTTGGTGTAGGCAGTT
1 GGCCCTGTGTGAGTG--GTTGCCTCGATCACCATCGGCATA-AATTGGCCCTGGTG-CGGCGGTT
* *
13864370 ACCTCGAGCACCATCGGCACA
62 GCCTCGAACACCATCGGCACA
13864391 TGTCGATCGA
Statistics
Matches: 286, Mismatches: 55, Indels: 28
0.78 0.15 0.08
Matches are distributed among these distances:
133 7 0.02
134 6 0.02
135 260 0.91
136 10 0.03
137 3 0.01
ACGTcount: A:0.16, C:0.31, G:0.31, T:0.22
Consensus pattern (132 bp):
GGCCCTGTGTGAGTGGTTGCCTCGATCACCATCGGCATAAATTGGCCCTGGTGCGGCGGTTGCCT
CGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAGCACCATCGGCACACAT
TG
Found at i:13864045 original size:90 final size:91
Alignment explanation
Indices: 13863945--13864390 Score: 487
Period size: 90 Copynumber: 4.9 Consensus size: 91
13863935 GGCATGTTTT
* * * * * * *
13863945 GGCCCTTGGTGCGAGCGGTTGCCTCGACCACCATCGGT-AGA-AGATGGGCCCTGGTACGGGTGA
1 GGCCC-TGGTGCGAGCGGTTGCCTCGATCACCATCGGTCACACA-CTGAGCCCTGGTGCGGGCGG
*
13864008 TTGCCTCGAGCACCATCGGCACACATTG
64 TTGCCTCGAGCACCATCGGCACACACTG
* *
13864036 GGCCCTGGTGC-ATGTGGTTGCCTCGATCACCATC-GTCACACACTGAGCCCTGGTGTGGGCGGT
1 GGCCCTGGTGCGA-GCGGTTGCCTCGATCACCATCGGTCACACACTGAGCCCTGGTGCGGGCGGT
* *
13864099 TGCCTCGATCACCATCGGCACTCACTG
65 TGCCTCGAGCACCATCGGCACACACTG
* *
13864126 GGCCCTGGTGC-ATGTGGTTGCCTCGATCACCATC-GTCACACACTGAGCCCTGGTGTGGGCGGT
1 GGCCCTGGTGCGA-GCGGTTGCCTCGATCACCATCGGTCACACACTGAGCCCTGGTGCGGGCGGT
* *
13864189 TGCCTCGATCACCATCGGCACTCACTG
65 TGCCTCGAGCACCATCGGCACACACTG
* * * * *
13864216 GGCCCTGGTGCG-GACAGTTGCCTCGAACACCATAGG-CACACGCTGGGCCCTGGTGCGGGCGGT
1 GGCCCTGGTGCGAG-CGGTTGCCTCGATCACCATCGGTCACACACTGAGCCCTGGTGCGGGCGGT
**
13864279 TGCCTCGAGCACCATCGGCACACGTTG
65 TGCCTCGAGCACCATCGGCACACACTG
* * * * * * ** *
13864306 GGCCCAGGTGCGGGCAGTTGCCTCGATCACCATCGG-CATACACTGGGCCTTGGTGTAGGCAGTT
1 GGCCCTGGTGCGAGCGGTTGCCTCGATCACCATCGGTCACACACTGAGCCCTGGTGCGGGCGGTT
*
13864370 ACCTCGAGCACCATCGGCACA
66 GCCTCGAGCACCATCGGCACA
13864391 TGTCGATCGA
Statistics
Matches: 315, Mismatches: 33, Indels: 15
0.87 0.09 0.04
Matches are distributed among these distances:
89 4 0.01
90 303 0.96
91 8 0.03
ACGTcount: A:0.16, C:0.32, G:0.31, T:0.20
Consensus pattern (91 bp):
GGCCCTGGTGCGAGCGGTTGCCTCGATCACCATCGGTCACACACTGAGCCCTGGTGCGGGCGGTT
GCCTCGAGCACCATCGGCACACACTG
Found at i:13864444 original size:69 final size:69
Alignment explanation
Indices: 13864328--13864461 Score: 187
Period size: 69 Copynumber: 1.9 Consensus size: 69
13864318 GGCAGTTGCC
* * **
13864328 TCGATCACCATCGGCATACACTGGGCCTTGGTGTAGGCAGTTACCTCGAGCACCATCGGCACATG
1 TCGATCACCATCGACACACACTGGGCCCCGGTGTAGGCAGTTACCTCGAGCACCATCGGCACATG
13864393 TCGA
66 TCGA
* * * * *
13864397 TCGATCACCATCGACACACGCTGGGCCCCGGTGTGGGCGGTTGCCTCGATCACCATCGGCACATG
1 TCGATCACCATCGACACACACTGGGCCCCGGTGTAGGCAGTTACCTCGAGCACCATCGGCACATG
13864462 CTGGGCCCTG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
69 56 1.00
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (69 bp):
TCGATCACCATCGACACACACTGGGCCCCGGTGTAGGCAGTTACCTCGAGCACCATCGGCACATG
TCGA
Found at i:13864465 original size:45 final size:45
Alignment explanation
Indices: 13864397--13864532 Score: 148
Period size: 45 Copynumber: 3.0 Consensus size: 45
13864387 CACATGTCGA
* * *
13864397 TCGATCACCATCGACACACGCTGGGCCCCGGTGTGGGCGGTTGCC
1 TCGATCACCATCGGCACATGCTGGGCCCTGGTGTGGGCGGTTGCC
** ** * *
13864442 TCGATCACCATCGGCACATGCTGGGCCCTGGTACGAACAGTTACC
1 TCGATCACCATCGGCACATGCTGGGCCCTGGTGTGGGCGGTTGCC
* * *
13864487 TCGAACACCATCGGCACATGTTGGGCTCTGGTGCT-GGCGGTTGCC
1 TCGATCACCATCGGCACATGCTGGGCCCTGGTG-TGGGCGGTTGCC
13864532 T
1 T
13864533 TAGTTGGACC
Statistics
Matches: 72, Mismatches: 18, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
45 72 1.00
ACGTcount: A:0.16, C:0.32, G:0.30, T:0.21
Consensus pattern (45 bp):
TCGATCACCATCGGCACATGCTGGGCCCTGGTGTGGGCGGTTGCC
Found at i:13864488 original size:114 final size:114
Alignment explanation
Indices: 13864283--13864507 Score: 310
Period size: 114 Copynumber: 2.0 Consensus size: 114
13864273 GGCGGTTGCC
* * *
13864283 TCGAGCACCATCGGCACACGTTGGGCCCAGGTGCGGGCAGTTGCCTCGATCACCATCGGCATACA
1 TCGAGCACCATCGACACACGCTGGGCCCAGGTGCGGGCAGTTGCCTCGATCACCATCGGCACACA
* * *
13864348 CTGGGCCTTGGTGTAGGCAGTTACCTCGAGCACCATCGGCACATGTCGA
66 CTGGGCCCTGGTGTAGACAGTTACCTCGAACACCATCGGCACATGTCGA
* * * * **
13864397 TCGATCACCATCGACACACGCTGGGCCCCGGTGTGGGCGGTTGCCTCGATCACCATCGGCACATG
1 TCGAGCACCATCGACACACGCTGGGCCCAGGTGCGGGCAGTTGCCTCGATCACCATCGGCACACA
13864462 CTGGGCCCT-G-GTACGAACAGTTACCTCGAACACCATCGGCACATGT
66 CTGGGCCCTGGTGTA-G-ACAGTTACCTCGAACACCATCGGCACATGT
13864508 TGGGCTCTGG
Statistics
Matches: 97, Mismatches: 12, Indels: 4
0.86 0.11 0.04
Matches are distributed among these distances:
112 3 0.03
113 2 0.02
114 92 0.95
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (114 bp):
TCGAGCACCATCGACACACGCTGGGCCCAGGTGCGGGCAGTTGCCTCGATCACCATCGGCACACA
CTGGGCCCTGGTGTAGACAGTTACCTCGAACACCATCGGCACATGTCGA
Found at i:13868539 original size:26 final size:26
Alignment explanation
Indices: 13868500--13868552 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13868490 CCTGTCTGAT
13868500 CTTAGACTGAGAATGAACT-TCGTATG
1 CTTAGACTGAGAATGAACTCT-GTATG
13868526 CTTAGACT-AGGAATGAACTCTGTATG
1 CTTAGACTGA-GAATGAACTCTGTATG
13868552 C
1 C
13868553 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:13868983 original size:345 final size:345
Alignment explanation
Indices: 13868432--13869099 Score: 828
Period size: 345 Copynumber: 1.9 Consensus size: 345
13868422 ATAAGGGTAA
* * * * * *
13868432 GATGCGCAAGCAGGGGATCGACCCGGTCCTCCTCTGCGTGCTGCTACCGATTTGGCTGCCTGTCT
1 GATGCACAAGCAGGGGATCGACCCGATCCCCCTCTGCGTGCTGCTACCGATCTCGCTGCATGTCT
* * * * *
13868497 GATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTAGGAATGAACTCTGTATGCCTAAGTCAA
66 GACCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGCAATCAACTCCGTATGCCTAAGTCAA
* * ** * *
13868562 CCCACGAAACGAGCGTGCAGGTGCTTAGTCGGTCAGAGAGGCATAATACGCAAGCCAGGGTTCTG
131 CCCACGAAACGAGCATGCAGGTGCTTAGCCGACCAGAGAGGCATAATACGCAAGCCAGGGATCGG
* * * *
13868627 TCTGATCCCCTTCTGCGTGCTACCGATCCCACTGTCGGTCCAACTGCCACAACCCTCGGTCTGAC
196 TCCGATCCCCTTCTGCATGCTACCGATCCCACTGTCGATCCAACTGCCACAACCCTCGATCTGAC
* *
13868692 TGGGACTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGC
261 TGGGACTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCAGGCGGGCGC
13868757 TCAACTGACCGAAGAGGCAG
326 TCAACTGACCGAAGAGGCAG
* * **
13868777 GATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCTGTCGATCTCGCTGTCGAT-T
1 GATGCACAAGCAGGGGATCGACCCGATCCCCCTCTGCGTGCTGCTACCGATCTCGCTG-C-ATGT
13868841 C-GACCTTAGACT-ATGAATGAACTCCGTATGCTTAGACT-GACAATCAACTCCGTATGCCTAAG
64 CTGACCTTAGACTGA-GAATGAACTCCGTATGCTTAGACTAG-CAATCAACTCCGTATGCCTAAG
* * * * *
13868903 TCAACCCATGAAACGAGCATGCA-G-GCATTGAGCCGACC-GAAGAGTCATAATGCGTAAGCCCG
127 TCAACCCACGAAACGAGCATGCAGGTGC-TT-AGCCGACCAG-AGAGGCATAATACGCAAGCCAG
* * ** ** * *
13868965 GGATCGGTCCGGTCCCCTTCTGCATGTTGTCGATCCTGCTGTCGATCCAGCTGCCACAACCCTTG
189 GGATCGGTCCGATCCCCTTCTGCATGCTACCGATCCCACTGTCGATCCAACTGCCACAACCCTCG
* * * *
13869030 ATCTGCCTGGGGCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCAGG
254 ATCTGACTGGGACTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCAGG
13869095 CGGGC
319 CGGGC
13869100 ATTACGTCGG
Statistics
Matches: 272, Mismatches: 44, Indels: 14
0.82 0.13 0.04
Matches are distributed among these distances:
343 2 0.01
344 6 0.02
345 260 0.96
346 3 0.01
347 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.22
Consensus pattern (345 bp):
GATGCACAAGCAGGGGATCGACCCGATCCCCCTCTGCGTGCTGCTACCGATCTCGCTGCATGTCT
GACCTTAGACTGAGAATGAACTCCGTATGCTTAGACTAGCAATCAACTCCGTATGCCTAAGTCAA
CCCACGAAACGAGCATGCAGGTGCTTAGCCGACCAGAGAGGCATAATACGCAAGCCAGGGATCGG
TCCGATCCCCTTCTGCATGCTACCGATCCCACTGTCGATCCAACTGCCACAACCCTCGATCTGAC
TGGGACTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAACGAGCAGGCGGGCGC
TCAACTGACCGAAGAGGCAG
Found at i:13869076 original size:171 final size:169
Alignment explanation
Indices: 13868525--13869103 Score: 459
Period size: 171 Copynumber: 3.4 Consensus size: 169
13868515 AACTTCGTAT
*
13868525 GCTTAGACTAGGAATGAAC-TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGTGC-TT
1 GCTTAGACT-GGAATGAACTTC-GTATGCCTAAGTCAACCCACGAAACGAGCATGCA-G-GCATT
* ** * * * * * **
13868588 AGTCGGTC-AGAGAGGCATAATACGCAAGCCAGGGTTCTGTCTGATCCCCTTCTGCGTGCTACCG
62 AGCCGACCGA-AGAGGCATAATGCGCAAGCCAGGGATCGGTCCGATCCCCTTCTGCGTGTTGTCG
** * * * *
13868652 ATCCCACTGTCGGTCCAACTGCCACAACCCTCGGTCTGACTGGG
126 ATCCTGCTGTCGATCCAACTGCCACAACCCTTGATCTGCCTGGG
* * * * * * * *
13868696 ACTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCACAAAATGAGCATGCGGGCGCTCAA
1 GCTTAGAC-TGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGC-ATTAG
* ** * * * *
13868761 CTGACCGAAGAGGCAGGATGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCTGTCG
64 CCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGTCCGATCCCCTTCTGCGTG-T--TGTCG
* * *** * **** * **
13868826 AT-CTCGCTGTCGATTCGACCTTAGACTATGAATGAACT-CC-GTAT
126 ATCCT-GCTGTCGA-TCCAACTGCCACAACCCTTGATCTGCCTG-GG
* * * *
13868870 GCTTAGACTGACAATCAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCAGGCATTGAG
1 GCTTAGACTG-GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCATT-AG
* * * * *
13868935 CCGACCGAAGAGTCATAATGCGTAAGCCCGGGATCGGTCCGGTCCCCTTCTGCATGTTGTCGATC
64 CCGACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGTCCGATCCCCTTCTGCGTGTTGTCGATC
*
13869000 CTGCTGTCGATCCAGCTGCCACAACCCTTGATCTGCCTGGG
129 CTGCTGTCGATCCAACTGCCACAACCCTTGATCTGCCTGGG
* *
13869041 GCTTAGACATGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCAGGCGGGCATTA
1 GCTTAGAC-TGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCATTA
13869104 CGTCGGCCAG
Statistics
Matches: 305, Mismatches: 86, Indels: 35
0.72 0.20 0.08
Matches are distributed among these distances:
169 2 0.01
170 15 0.05
171 157 0.51
172 9 0.03
173 6 0.02
174 105 0.34
175 11 0.04
ACGTcount: A:0.25, C:0.29, G:0.25, T:0.21
Consensus pattern (169 bp):
GCTTAGACTGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCATGCAGGCATTAGCC
GACCGAAGAGGCATAATGCGCAAGCCAGGGATCGGTCCGATCCCCTTCTGCGTGTTGTCGATCCT
GCTGTCGATCCAACTGCCACAACCCTTGATCTGCCTGGG
Found at i:13869890 original size:45 final size:45
Alignment explanation
Indices: 13869841--13869951 Score: 145
Period size: 45 Copynumber: 2.5 Consensus size: 45
13869831 GTACGGGCAC
13869841 TTGCCTCGACTGCCATCGGCACAAGCTAGGCCC-TGGTGTGGACGG
1 TTGCCTCGACTGCCATCGGCACAAGCT-GGCCCTTGGTGTGGACGG
* * * *
13869886 TTGCCTCGA-TCACCATTGGCACATGCTGGCCCTTGGTGTGGGCGG
1 TTGCCTCGACT-GCCATCGGCACAAGCTGGCCCTTGGTGTGGACGG
*
13869931 TTGCCTTGACTGCCATCGGCA
1 TTGCCTCGACTGCCATCGGCA
13869952 GAATATGGGC
Statistics
Matches: 56, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
44 6 0.11
45 49 0.88
46 1 0.02
ACGTcount: A:0.14, C:0.31, G:0.32, T:0.24
Consensus pattern (45 bp):
TTGCCTCGACTGCCATCGGCACAAGCTGGCCCTTGGTGTGGACGG
Found at i:13869922 original size:90 final size:90
Alignment explanation
Indices: 13869813--13869990 Score: 216
Period size: 90 Copynumber: 2.0 Consensus size: 90
13869803 GACCATCATC
* *
13869813 GGCACAGGCTGCCCTTTGGTACGGGCACTTGCCTCGACTGCCATCGGCACAAGCTAGGCCCTGGT
1 GGCACAGGCTGCCCTTTGGTACGGGCACTTGCCTCGACTGCCATCGGCACAAGATAGGCCCTAGT
*
13869878 G-TGGACGGTTGCCTCGATCACCATT
66 GCAGG-CGGTTGCCTCGATCACCATT
* ** ** * * * *
13869903 GGCACATGCTGGCCC-TTGGTGTGGGCGGTTGCCTTGACTGCCATCGGCAGAATATGGGCCCTAG
1 GGCACAGGCT-GCCCTTTGGTACGGGCACTTGCCTCGACTGCCATCGGCACAAGATAGGCCCTAG
13869967 TGCAGGCGGTTGCCTCGATCACCA
65 TGCAGGCGGTTGCCTCGATCACCA
13869991 ATAAGGGTGG
Statistics
Matches: 74, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
90 68 0.92
91 6 0.08
ACGTcount: A:0.15, C:0.30, G:0.32, T:0.22
Consensus pattern (90 bp):
GGCACAGGCTGCCCTTTGGTACGGGCACTTGCCTCGACTGCCATCGGCACAAGATAGGCCCTAGT
GCAGGCGGTTGCCTCGATCACCATT
Found at i:13876458 original size:45 final size:45
Alignment explanation
Indices: 13875748--13876530 Score: 496
Period size: 45 Copynumber: 17.4 Consensus size: 45
13875738 TTACATCAAA
* * * * * * *
13875748 CACCATCGACACAAGCTGGGCCCTGGTGCGGGCGATTACCTTGAA
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
* * ** ** *
13875793 CACCATTGGCACAAGCT-GGCCCATGGTGTGGGCTCTTGCCTCGAC
1 CACCATCGGCACACGCTGGGCCC-TGGTACGGGCGGTTGCCTCGAG
* * ** ** *
13875838 CACCATCGACACACGTTGAACCCTGGTGTGGGTGGTTGCCTCGAG
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
* * * * * *
13875883 CACCATCGGCACACACTGGGCCCTGATGCGGGTGGTTGCCTTGAA
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
* * * * * * * *
13875928 CACCATCAGCACACACTAGGCCCCGTTACGGGTGGTTACCTCGAT
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
* * * *
13875973 CACCATCGACACACGCTGGGCTCTGGTACGGGCGGTTACCTCAAG
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
* * * * *
13876018 CACTATTGGCACACGCTGGGCCTTGGTACGAGCGATTG-CTCCGAG
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCT-CGAG
* * * * * * ** *
13876063 CACCATCGGCATAAG-TTGACCCTTGGTGCAGGCTCTTGCCTCGAC
1 CACCATCGGCACACGCTGGGCCC-TGGTACGGGCGGTTGCCTCGAG
* * * * * ** * * *
13876108 CACCATCGACAAAAGATGGTCCCTGGTGTGGGCGGTTACGTCGAA
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
* * * * *
13876153 CACCATCGACACACGTTGGGCCCTGGTATGAGCGGTTGCCTCGAT
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
* * * *
13876198 CACCATTGGCACACGCTGGGCCCTGCTACGGGTGGTTGCCTCGAA
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
* * ** * ** * ** * *
13876243 TACCATTGATACAAGC-CAGCCCTTGGTGCGGGCTCTTGCCTCAAC
1 CACCATCGGCACACGCTGGGCCC-TGGTACGGGCGGTTGCCTCGAG
** * *
13876288 CACCATCAACACACGTTGGGCCCTGGTACGGGCGATTGCCTCGAG
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
* * * * * *
13876333 CACTATCGGCACACACTGGGCCCTAGTATGGGTGGTTGCCTCGAA
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
* * * * *
13876378 CACCATCGGCACATGCTGGGCCCTGTTGA-TGGCGGTTGCCTTGAT
1 CACCATCGGCACACGCTGGGCCCTGGT-ACGGGCGGTTGCCTCGAG
* **
13876423 CACCATCGACACACGCTGGGCCCTGGTACAAGCGGTTGCCTCGAG
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
* * * * * * *
13876468 CACCATTGGCACACGTTAGGCCTTGGTACGAGCAGTTGCTTCGAG
1 CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
*
13876513 CACCATCGGCACAAGCTG
1 CACCATCGGCACACGCTG
13876531 ACCCTTAGTG
Statistics
Matches: 569, Mismatches: 159, Indels: 20
0.76 0.21 0.03
Matches are distributed among these distances:
44 16 0.03
45 538 0.95
46 15 0.03
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.21
Consensus pattern (45 bp):
CACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCCTCGAG
Found at i:13876748 original size:45 final size:45
Alignment explanation
Indices: 13876656--13876755 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 45
13876646 GGTTACCTCG
* * * * * *
13876656 ACCACCATCTGCACATGCTGGCCCTTGGTGCGGGTAGTCGTATCA
1 ACCACCATCGGCACACGCTGGCCCTTGGTGCGGGCAATCGCACCA
*
13876701 ACCACCATCGGCACACGCTGGCCCTTGGTGCGGGCACAT-GCCCCA
1 ACCACCATCGGCACACGCTGGCCCTTGGTGCGGGCA-ATCGCACCA
13876746 ACCACCATCG
1 ACCACCATCG
13876756 ACACCTACTC
Statistics
Matches: 47, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
45 46 0.98
46 1 0.02
ACGTcount: A:0.19, C:0.38, G:0.25, T:0.18
Consensus pattern (45 bp):
ACCACCATCGGCACACGCTGGCCCTTGGTGCGGGCAATCGCACCA
Found at i:13883985 original size:45 final size:44
Alignment explanation
Indices: 13883805--13884481 Score: 283
Period size: 45 Copynumber: 15.0 Consensus size: 44
13883795 CGACATACAT
* * * *
13883805 TGGGCCCTGGTGC-AGGCGGTTGCCTCAAACACCATCGACACATGT
1 TGGGCCCTGGTGCGA-GCGGTTGCCTC-GACACCATCGGCACACGC
* * * * * *
13883850 TGGGCCCTGGTGTGGGCGATTGCCTCGAGCACCATCGGCAGAAGA
1 TGGGCCCTGGTGCGAGCGGTTGCCTCGA-CACCATCGGCACACGC
* * * *
13883895 T-GGCTCCTGGTGC-AGACGGTTGCCTCAAACACCATTGACATACGC
1 TGGGC-CCTGGTGCGAG-CGGTTGCCTC-GACACCATCGGCACACGC
* * * *
13883940 TGGGCCCTGGTACGAGCGGTTACCTCAATCACCATCGACACACGC
1 TGGGCCCTGGTGCGAGCGGTTGCCTCGA-CACCATCGGCACACGC
* * * * * * * *
13883985 TGAGCCCTCGTACG-GACAGTTACCTGGACCACCATCGCCACAAG-
1 TGGGCCCTGGTGCGAG-CGGTTGCCTCGA-CACCATCGGCACACGC
* * * ** * * * * *
13884029 TCGACCCTTGGTGCGGGCTCTTGCCTCGACCACCATCTGTAGAAGA
1 TGGGCCC-TGGTGCGAGCGGTTGCCTCGA-CACCATCGGCACACGC
** * * * * * * *
13884075 TGAACCCTGATAC-AGCCGGTTACATCGAAGACCATCGACGCACGC
1 TGGGCCCTGGTGCGAG-CGGTTGCCTCG-ACACCATCGGCACACGC
* **
13884120 CGGAACCTGGTGCGAGCGGTTGCCTCGATCACCATCGGCACACGC
1 TGGGCCCTGGTGCGAGCGGTTGCCTCGA-CACCATCGGCACACGC
** * * * *
13884165 TGGGCTTTGGTGCGGGCGGTTGTCTCGAACACCATCGGCATAAGC
1 TGGGCCCTGGTGCGAGCGGTTGCCTCG-ACACCATCGGCACACGC
* * ** * *
13884210 -CGGCCCTTGGTGCGGGCTCTTACCTCGACCACCATCGGCACACAC
1 TGGGCCC-TGGTGCGAGCGGTTGCCTCGA-CACCATCGGCACACGC
* *
13884255 TGGGCCCTGGTGC-AGGCGGATGCCTCGAGCACCATCGGCACATGC
1 TGGGCCCTGGTGCGA-GCGGTTGCCTCGA-CACCATCGGCACACGC
* * * * * *
13884300 TGGGCCCTGATGCTGA-TGGTTACCACGAACACCATCGGCACAAGT
1 TGGGCCCTGGTGC-GAGCGGTTGCCTCG-ACACCATCGGCACACGC
** * * *
13884345 TGGGCCCTATTACGGGCAGTTGCCTCGATCACCATCGGCACACGC
1 TGGGCCCTGGTGCGAGCGGTTGCCTCGA-CACCATCGGCACACGC
* * * * * ** *
13884390 TGGGCCTTGGTACGGGTGGTTGCCTTGAGCACCATTAGCACACAC
1 TGGGCCCTGGTGCGAGCGGTTGCCTCGA-CACCATCGGCACACGC
* * * * * * *
13884435 TGGGCCTTTGTACGAGCAGTTGCTTCGAGCATCATCGGCACAAGC
1 TGGGCCCTGGTGCGAGCGGTTGCCTCGA-CACCATCGGCACACGC
13884480 TG
1 TG
13884482 ACCGTTGGTG
Statistics
Matches: 471, Mismatches: 135, Indels: 52
0.72 0.21 0.08
Matches are distributed among these distances:
44 20 0.04
45 428 0.91
46 22 0.05
47 1 0.00
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.20
Consensus pattern (44 bp):
TGGGCCCTGGTGCGAGCGGTTGCCTCGACACCATCGGCACACGC
Found at i:13884323 original size:90 final size:90
Alignment explanation
Indices: 13883761--13884481 Score: 312
Period size: 90 Copynumber: 8.0 Consensus size: 90
13883751 GGGGCAAGAT
* * * * * *
13883761 GGCCCTTGGTGTGGATGGTTACGTCGAACACCATCGACATACATTGGGCCCTGGTGCAGGCGGTT
1 GGCCC-TGGTGCGGATGGTTACCTCGAACACCATCGGCACACACTGGGCCCTGGTGCGGGCGGTT
* * * *
13883826 GCCTCAAACACCATCGACACATGTTG
65 GCCTCGAACACCATCGGCACAAGCTG
* ** * * * * * * *
13883852 GGCCCTGGTGTGGGCGATTGCCTCGAGCACCATCGGCAGA-AGAT-GGCTCCTGGTGCAGACGGT
1 GGCCCTGGTGCGGATGGTTACCTCGAACACCATCGGCACACA-CTGGGC-CCTGGTGCGGGCGGT
* * * * *
13883915 TGCCTCAAACACCATTGACATACGCTG
64 TGCCTCGAACACCATCGGCACAAGCTG
* * * * * * * * *
13883942 GGCCCTGGTAC-GAGCGGTTACCTC-AATCACCATCGACACACGCTGAGCCCTCGTACGGACAGT
1 GGCCCTGGTGCGGA-TGGTTACCTCGAA-CACCATCGGCACACACTGGGCCCTGGTGCGGGCGGT
* * * * *
13884005 TACCTGGACCACCATCGCCACAAG-TC
64 TGCCTCGAACACCATCGGCACAAGCTG
* * * * * * * * * ** * * * *
13884031 GACCCTTGGTGCGGGCT-CTTGCCTCGACCACCATCTGTAGA-AGATGAACCCTGATACAGCCGG
1 GGCCC-TGGTGC-GGATGGTTACCTCGAACACCATCGGCACACA-CTGGGCCCTGGTGCGGGCGG
* * * * * * *
13884094 TTACATCGAAGACCATCGACGCACGCCG
63 TTGCCTCGAACACCATCGGCACAAGCTG
** * * * * **
13884122 GAACCTGGTGC-GAGCGGTTGCCTCGATCACCATCGGCACACGCTGGGCTTTGGTGCGGGCGGTT
1 GGCCCTGGTGCGGA-TGGTTACCTCGAACACCATCGGCACACACTGGGCCCTGGTGCGGGCGGTT
* * *
13884186 GTCTCGAACACCATCGGCATAAGC-C
65 GCCTCGAACACCATCGGCACAAGCTG
* * * * *
13884211 GGCCCTTGGTGCGGGCT-CTTACCTCGACCACCATCGGCACACACTGGGCCCTGGTGCAGGCGGA
1 GGCCC-TGGTGC-GGATGGTTACCTCGAACACCATCGGCACACACTGGGCCCTGGTGCGGGCGGT
* *
13884275 TGCCTCGAGCACCATCGGCACATGCTG
64 TGCCTCGAACACCATCGGCACAAGCTG
* * * * ** * *
13884302 GGCCCTGATGCTGATGGTTACCACGAACACCATCGGCACA-AGTTGGGCCCTATTACGGGCAGTT
1 GGCCCTGGTGCGGATGGTTACCTCGAACACCATCGGCACACA-CTGGGCCCTGGTGCGGGCGGTT
* *
13884366 GCCTCGATCACCATCGGCACACGCTG
65 GCCTCGAACACCATCGGCACAAGCTG
* * * * * * ** * * * * *
13884392 GGCCTTGGTACGGGTGGTTGCCTTGAGCACCATTAGCACACACTGGGCCTTTGTACGAGCAGTTG
1 GGCCCTGGTGCGGATGGTTACCTCGAACACCATCGGCACACACTGGGCCCTGGTGCGGGCGGTTG
* * *
13884457 CTTCGAGCATCATCGGCACAAGCTG
66 CCTCGAACACCATCGGCACAAGCTG
13884482 ACCGTTGGTG
Statistics
Matches: 463, Mismatches: 145, Indels: 45
0.71 0.22 0.07
Matches are distributed among these distances:
88 1 0.00
89 17 0.04
90 425 0.92
91 18 0.04
92 2 0.00
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.20
Consensus pattern (90 bp):
GGCCCTGGTGCGGATGGTTACCTCGAACACCATCGGCACACACTGGGCCCTGGTGCGGGCGGTTG
CCTCGAACACCATCGGCACAAGCTG
Found at i:13884329 original size:135 final size:134
Alignment explanation
Indices: 13884125--13884440 Score: 321
Period size: 135 Copynumber: 2.3 Consensus size: 134
13884115 CACGCCGGAA
* ** * * ** *
13884125 CCTGGTGCGAGCGGTTGCCTCGATCACCATCGGCACACGCTGGGCTTTGGTGCGGGCGGTTGTCT
1 CCTGGTGCG-GCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGATGCGGACGGTTACCA
* * *
13884190 CGAACACCATCGGCATAAG-CCGGCCCT-TGGTGCGGGCTCTTACCTCGACCACCATCGGCACAC
65 CGAACACCATCGGCACAAGTCCGGCCCTAT--TACGGGCACTTACCTCGACCACCATCGGCACAC
13884253 ACTGGGC
128 ACTGGGC
* * * *
13884260 CCTGGTGCAGGCGGATGCCTCGAGCACCATCGGCACATGCTGGGCCCTGATGCTGATGGTTACCA
1 CCTGGTGC-GGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGATGCGGACGGTTACCA
** * * * *
13884325 CGAACACCATCGGCACAAGTTGGGCCCTATTACGGGCAGTTGCCTCGATCACCATCGGCACACGC
65 CGAACACCATCGGCACAAGTCCGGCCCTATTACGGGCACTTACCTCGACCACCATCGGCACACAC
13884390 TGGGC
130 TGGGC
* * * * ** *
13884395 CTTGGTACGGGTGGTTGCCTTGAGCACCATTAGCACACACTGGGCC
1 CCTGGTGC-GGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCC
13884441 TTTGTACGAG
Statistics
Matches: 147, Mismatches: 31, Indels: 6
0.80 0.17 0.03
Matches are distributed among these distances:
135 139 0.95
136 7 0.05
137 1 0.01
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.20
Consensus pattern (134 bp):
CCTGGTGCGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGATGCGGACGGTTACCAC
GAACACCATCGGCACAAGTCCGGCCCTATTACGGGCACTTACCTCGACCACCATCGGCACACACT
GGGC
Found at i:13884754 original size:45 final size:45
Alignment explanation
Indices: 13884650--13884754 Score: 174
Period size: 45 Copynumber: 2.3 Consensus size: 45
13884640 CAGTTGCATA
* *
13884650 AACCACCATCGACACGCGCTGGCCTTTGGTGCGGGCACATGCCCC
1 AACCACCATCGGCACGCGCTGGCCCTTGGTGCGGGCACATGCCCC
*
13884695 AACCACCATCGGCACGTGCTGGCCCTTGGTGCGGGCACATGCCCC
1 AACCACCATCGGCACGCGCTGGCCCTTGGTGCGGGCACATGCCCC
*
13884740 AACCACCATTGGCAC
1 AACCACCATCGGCAC
13884755 CTACTCACCC
Statistics
Matches: 56, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 56 1.00
ACGTcount: A:0.19, C:0.40, G:0.26, T:0.15
Consensus pattern (45 bp):
AACCACCATCGGCACGCGCTGGCCCTTGGTGCGGGCACATGCCCC
Found at i:13892753 original size:26 final size:26
Alignment explanation
Indices: 13892717--13892769 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
13892707 TCGGTTCGAT
13892717 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13892743 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
13892769 C
1 C
13892770 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:13892819 original size:174 final size:173
Alignment explanation
Indices: 13892248--13892821 Score: 436
Period size: 174 Copynumber: 3.3 Consensus size: 173
13892238 TAAACCTCGA
* * * * * * *
13892248 ATGCGTAAGTCAACCC-TGAAATGAGCATGCGGGCGCTGAG-CGGGCAGAGGGGCAGGATGCGCA
1 ATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGCCGGTCAGAGAGGCAGGATGCACA
* * * * * *
13892311 AGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTGTCGAT-CCGACTGCCTGTCCGATCTTA
66 AGCTAGGGATCAGCTCGGTCCCCCTCTACGTGCTGCTGTCGATCCCG-CTGCCAGTTCGATCTTA
*
13892375 GACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTTGT
130 GACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTTCGT
* * * * * * * * **
13892420 TTAACCTAAGTCAAACCATGAAACAAGCCGTGCGGGTGCTCAGTCGGTCAGAGAGGCATAATGCA
1 AT-GCCTAAGTCAACCCATGAAACGAG-CATACGGGCGCTCAGCCGGTCAGAGAGGCAGGATGCA
* * * * * * *
13892485 CAAGC-AGAGATCTG-TCCGATCCCCCTTTACGTGCTAC--T-GATCCCGCTGCCAG-TCCAGCT
64 CAAGCTAGGGATCAGCT-CGGTCCCCCTCTACGTGCTGCTGTCGATCCCGCTGCCAGTTCGATCT
* * * *** * *
13892544 GCCACAACCCTCGGTCCG-ACT-GGGA--CTTAGACATGGAATGAACTTCGT
128 --TA-GA--CTGGGAATGAACTCCGTATGCTTAGAC-TGGAATGAACTTCGT
* * * * * * ** * *
13892592 ATGCCTAAGCCAACCCATAAAATGATCGTACGGGTGCTCAGCCGACCGGAGAGGCAGGATGCTCA
1 ATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGCCGGTCAGAGAGGCAGGATGCACA
* * *
13892657 AGCTTGGGATCAGCTCGGTCCCCCTCTACGTGCTGCTGTCGATCCCGCTGTCGGTTCGATCTTAG
66 AGCTAGGGATCAGCTCGGTCCCCCTCTACGTGCTGCTGTCGATCCCGCTGCCAGTTCGATCTTAG
*
13892722 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
131 ACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTTCGT
* * **
13892766 ATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGTTGAGCCGGTTGGAGAGGCA
1 ATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGCCGGTCAGAGAGGCA
13892822 TAATACGCAA
Statistics
Matches: 298, Mismatches: 81, Indels: 44
0.70 0.19 0.10
Matches are distributed among these distances:
170 39 0.13
171 48 0.16
172 35 0.12
173 20 0.07
174 87 0.29
175 43 0.14
176 26 0.09
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.21
Consensus pattern (173 bp):
ATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGCCGGTCAGAGAGGCAGGATGCACA
AGCTAGGGATCAGCTCGGTCCCCCTCTACGTGCTGCTGTCGATCCCGCTGCCAGTTCGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGAATGAACTTCGT
Found at i:13893867 original size:135 final size:135
Alignment explanation
Indices: 13893721--13894117 Score: 413
Period size: 135 Copynumber: 2.9 Consensus size: 135
13893711 GCATAAGATA
* * * **
13893721 GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATTGGCACGTGCT-GGCCCTTGGTGCGGGTGGTT
1 GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCTAGGCCC-TAGTGCGGGCAGTT
* * * * ** * * *
13893785 ACCTTGACCACCATCGGCAGAAGATAGGCCCTGGTGTGGGCGGTTGCCTCGAGCACCATTGGCAC
65 ACCTCGAACACCATAGGCACAAGATAGGCCCTGGTACGAGCGATTGCCTCGAGCACCATCGGCAC
13893850 ATGCTG
130 ATGCTG
*
13893856 GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCTAGGCCCTAGTGCGGGCAGTTG
1 GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCTAGGCCCTAGTGCGGGCAGTTA
* * *
13893921 CCTCGAACACCATAGGCACATGCTGGGCCCTGGTACGAGCGATTGCCTCGAGCACCATCGGCACA
66 CCTCGAACACCATAGGCACAAGATAGGCCCTGGTACGAGCGATTGCCTCGAGCACCATCGGCACA
13893986 TGCTG
131 TGCTG
* * * * * * * * *
13893991 GGCCCTGGTGCAGGCGGTTGCCTCGAGCACCATCGACAAACGCTGGGCCTTGGTGCGGGC-GATT
1 GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCTAGGCCCTAGTGCGGGCAG-TT
* * * * * * * * * *
13894055 GCCTCCAGCACCATCA-ACACACGCTGGGCCCTGGTACGGGCGATTGCCTCAAGTACCATCGGC
65 ACCTCGAACACCAT-AGGCACAAGATAGGCCCTGGTACGAGCGATTGCCTCGAGCACCATCGGC
13894118 GGTTGCCTCA
Statistics
Matches: 225, Mismatches: 34, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
134 1 0.00
135 218 0.97
136 6 0.03
ACGTcount: A:0.16, C:0.31, G:0.32, T:0.20
Consensus pattern (135 bp):
GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCTAGGCCCTAGTGCGGGCAGTTA
CCTCGAACACCATAGGCACAAGATAGGCCCTGGTACGAGCGATTGCCTCGAGCACCATCGGCACA
TGCTG
Found at i:13894059 original size:90 final size:90
Alignment explanation
Indices: 13893661--13894117 Score: 423
Period size: 90 Copynumber: 5.1 Consensus size: 90
13893651 AATCGACCAT
* * * * * * * * *
13893661 CATCGGCACAGGCT-GCCCTTTGGTACGGGC-ACTTGCCTCGACCGCCATCAGCATAAGATAGGC
1 CATCGGCACATGCTGGGCC-TTGGTGCGGGCGA-TTGCCTCGAGCACCATCGGCACATGCTAGGC
* * * *
13893724 CTTGGTGCAGGCGGTTGCCTTGATCAC
64 CCTGGTGCGGGCGGTTGCCTCGAGCAC
* * * * * * * * * * *
13893751 CATTGGCACGTGCTGGCCCTTGGTGCGGGTGGTTACCTTGACCACCATCGGCAGAAGATAGGCCC
1 CATCGGCACATGCTGGGCCTTGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTAGGCCC
*
13893816 TGGTGTGGGCGGTTGCCTCGAGCAC
66 TGGTGCGGGCGGTTGCCTCGAGCAC
* * * * *
13893841 CATTGGCACATGCTGGGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCTAGGCCC
1 CATCGGCACATGCTGGGCCTTGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTAGGCCC
* * *
13893906 TAGTGCGGGCAGTTGCCTCGAACAC
66 TGGTGCGGGCGGTTGCCTCGAGCAC
* * * * *
13893931 CATAGGCACATGCTGGGCCCTGGTACGAGCGATTGCCTCGAGCACCATCGGCACATGCTGGGCCC
1 CATCGGCACATGCTGGGCCTTGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTAGGCCC
*
13893996 TGGTGCAGGCGGTTGCCTCGAGCAC
66 TGGTGCGGGCGGTTGCCTCGAGCAC
* * * * ** * *
13894021 CATCGACAAACGCTGGGCCTTGGTGCGGGCGATTGCCTCCAGCACCATCAACACACGCTGGGCCC
1 CATCGGCACATGCTGGGCCTTGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTAGGCCC
* * * *
13894086 TGGTACGGGCGATTGCCTCAAGTAC
66 TGGTGCGGGCGGTTGCCTCGAGCAC
13894111 CATCGGC
1 CATCGGC
13894118 GGTTGCCTCA
Statistics
Matches: 306, Mismatches: 59, Indels: 4
0.83 0.16 0.01
Matches are distributed among these distances:
90 302 0.99
91 4 0.01
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (90 bp):
CATCGGCACATGCTGGGCCTTGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTAGGCCC
TGGTGCGGGCGGTTGCCTCGAGCAC
Found at i:13894079 original size:45 final size:45
Alignment explanation
Indices: 13893721--13894117 Score: 375
Period size: 45 Copynumber: 8.8 Consensus size: 45
13893711 GCATAAGATA
* * * * * * *
13893721 GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATTGGCACGTGCT-
1 GGCCCTGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTG
* * * * * * * * *
13893765 GGCCCTTGGTGCGGGTGGTTACCTTGACCACCATCGGCAGAAGATA
1 GGCCC-TGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTG
* * *
13893811 GGCCCTGGTGTGGGCGGTTGCCTCGAGCACCATTGGCACATGCTG
1 GGCCCTGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTG
* * * * * *
13893856 GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCTA
1 GGCCCTGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTG
* * *
13893901 GGCCCTAGTGCGGGC-AGTTGCCTCGAACACCATAGGCACATGCTG
1 GGCCCTGGTGCGGGCGA-TTGCCTCGAGCACCATCGGCACATGCTG
* *
13893946 GGCCCTGGTACGAGCGATTGCCTCGAGCACCATCGGCACATGCTG
1 GGCCCTGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTG
* * * * *
13893991 GGCCCTGGTGCAGGCGGTTGCCTCGAGCACCATCGACAAACGCTG
1 GGCCCTGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTG
* * ** *
13894036 GGCCTTGGTGCGGGCGATTGCCTCCAGCACCATCAACACACGCTG
1 GGCCCTGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTG
* * *
13894081 GGCCCTGGTACGGGCGATTGCCTCAAGTACCATCGGC
1 GGCCCTGGTGCGGGCGATTGCCTCGAGCACCATCGGC
13894118 GGTTGCCTCA
Statistics
Matches: 290, Mismatches: 59, Indels: 7
0.81 0.17 0.02
Matches are distributed among these distances:
44 4 0.01
45 280 0.97
46 6 0.02
ACGTcount: A:0.16, C:0.31, G:0.32, T:0.20
Consensus pattern (45 bp):
GGCCCTGGTGCGGGCGATTGCCTCGAGCACCATCGGCACATGCTG
Found at i:13894118 original size:22 final size:22
Alignment explanation
Indices: 13894093--13894139 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
13894083 CCCTGGTACG
*
13894093 GGCGATTGCCTCAAGTACCATC
1 GGCGATTGCCTCAAGCACCATC
*
13894115 GGCGGTTGCCTCAAGCACCATC
1 GGCGATTGCCTCAAGCACCATC
13894137 GGC
1 GGC
13894140 ACACGCTGGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (22 bp):
GGCGATTGCCTCAAGCACCATC
Found at i:13894169 original size:67 final size:67
Alignment explanation
Indices: 13894048--13894184 Score: 186
Period size: 67 Copynumber: 2.0 Consensus size: 67
13894038 CCTTGGTGCG
* *
13894048 GGCGATTGCCTCCAGCACCATCAACACACGCTGGGCCCTGGTACGGGCGATTGCCTCAAGT-ACC
1 GGCGATTGCCTCAAGCACCATCAACACACGCTGGGCCCTGGTACAGGCGATTGCCTCAA-TCACC
13894112 ATC
65 ATC
* ** * * *
13894115 GGCGGTTGCCTCAAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGTTTGCCTCGATCACCA
1 GGCGATTGCCTCAAGCACCATCAACACACGCTGGGCCCTGGTACAGGCGATTGCCTCAATCACCA
13894180 TC
66 TC
13894182 GGC
1 GGC
13894185 ACATGCTGGG
Statistics
Matches: 61, Mismatches: 8, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
66 1 0.02
67 60 0.98
ACGTcount: A:0.18, C:0.36, G:0.28, T:0.18
Consensus pattern (67 bp):
GGCGATTGCCTCAAGCACCATCAACACACGCTGGGCCCTGGTACAGGCGATTGCCTCAATCACCA
TC
Found at i:13894184 original size:45 final size:44
Alignment explanation
Indices: 13894119--13894261 Score: 142
Period size: 45 Copynumber: 3.2 Consensus size: 44
13894109 ACCATCGGCG
*
13894119 GTTGCCTCAAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGC
1 GTTGCCTCAAACACCATCGGCACACGCTGGGCCCTGGTGCAGGC
* * * * * * *
13894163 GTTTGCCTCGATCACCATCGGCACATGCTGGGCCCCGATACGGGC
1 G-TTGCCTCAAACACCATCGGCACACGCTGGGCCCTGGTGCAGGC
* * * * *
13894208 AGTTACCTTAAACACCATTGGCACACGTTGGGCCCTGGTGCTGGC
1 -GTTGCCTCAAACACCATCGGCACACGCTGGGCCCTGGTGCAGGC
13894253 GATTGCCTC
1 G-TTGCCTC
13894262 GGTCGGACCC
Statistics
Matches: 76, Mismatches: 20, Indels: 5
0.75 0.20 0.05
Matches are distributed among these distances:
44 2 0.03
45 73 0.96
46 1 0.01
ACGTcount: A:0.17, C:0.34, G:0.29, T:0.21
Consensus pattern (44 bp):
GTTGCCTCAAACACCATCGGCACACGCTGGGCCCTGGTGCAGGC
Found at i:13894205 original size:112 final size:112
Alignment explanation
Indices: 13894003--13894207 Score: 293
Period size: 112 Copynumber: 1.8 Consensus size: 112
13893993 CCCTGGTGCA
* * *
13894003 GGCGGTTGCCTCGAGCACCATCGACAAACGCTGGGCCTTGGTGCGGGCGATTGCCTCCAGCACCA
1 GGCGGTTGCCTCAAGCACCATCGACAAACGCTGGGCCCTGGTGCAGGCGATTGCCTCCAGCACCA
* *
13894068 TCAACACACGCTGGGCCCTGGTACGGGCGATTGCCTCAAGTACCATC
66 TCAACACACGCTGGGCCCCGATACGGGCGATTGCCTCAAGTACCATC
* * * * *
13894115 GGCGGTTGCCTCAAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGTTTGCCTCGATCACCA
1 GGCGGTTGCCTCAAGCACCATCGACAAACGCTGGGCCCTGGTGCAGGCGATTGCCTCCAGCACCA
** *
13894180 TCGGCACATGCTGGGCCCCGATACGGGC
66 TCAACACACGCTGGGCCCCGATACGGGC
13894208 AGTTACCTTA
Statistics
Matches: 80, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
112 80 1.00
ACGTcount: A:0.17, C:0.35, G:0.31, T:0.18
Consensus pattern (112 bp):
GGCGGTTGCCTCAAGCACCATCGACAAACGCTGGGCCCTGGTGCAGGCGATTGCCTCCAGCACCA
TCAACACACGCTGGGCCCCGATACGGGCGATTGCCTCAAGTACCATC
Found at i:13894254 original size:157 final size:157
Alignment explanation
Indices: 13893963--13894261 Score: 393
Period size: 157 Copynumber: 1.9 Consensus size: 157
13893953 GTACGAGCGA
* *
13893963 TTGCCTCGAGCACCATCGGCACATGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAGCACCATCGAC
1 TTGCCTCAAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAGCACCATCGAC
** * * * * *
13894028 AAACGCTGGGCCTTGGTGCGGGCGATTGCCTCCAGCACCATCAACACACGCTGGGCCCTGGTACG
66 AAACGCTGGGCCCCGATACGGGCGATTACCTCAAACACCATCAACACACGCTGGGCCCTGGTACG
13894093 GGCGATTGCCTCAAGTACCATCGGCGG
131 GGCGATTGCCTCAAGTACCATCGGCGG
* * *
13894120 TTGCCTCAAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGTTTGCCTCGATCACCATCGGC
1 TTGCCTCAAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAGCACCATCGAC
* * * *** * *
13894185 ACATGCTGGGCCCCGATACGGGC-AGTTACCTTAAACACCATTGGCACACGTTGGGCCCTGGTGC
66 AAACGCTGGGCCCCGATACGGGCGA-TTACCTCAAACACCATCAACACACGCTGGGCCCTGGTAC
*
13894249 TGGCGATTGCCTC
130 GGGCGATTGCCTC
13894262 GGTCGGACCC
Statistics
Matches: 120, Mismatches: 21, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
156 1 0.01
157 119 0.99
ACGTcount: A:0.17, C:0.34, G:0.30, T:0.19
Consensus pattern (157 bp):
TTGCCTCAAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAGCACCATCGAC
AAACGCTGGGCCCCGATACGGGCGATTACCTCAAACACCATCAACACACGCTGGGCCCTGGTACG
GGCGATTGCCTCAAGTACCATCGGCGG
Found at i:13898639 original size:26 final size:26
Alignment explanation
Indices: 13898601--13898651 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
13898591 GGTTCAATCA
* *
13898601 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGCAATGAACTCCGTATGCT
13898627 TAGACTGGCAATGAACTCCGTATGC
1 TAGACTGGCAATGAACTCCGTATGC
13898652 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTGGCAATGAACTCCGTATGCT
Found at i:13899656 original size:45 final size:45
Alignment explanation
Indices: 13899595--13899738 Score: 139
Period size: 45 Copynumber: 3.2 Consensus size: 45
13899585 TATAGGGCAC
* *
13899595 TTGCCTCGACCTCCATCGACACAAGCTGGGCCCTGGTGAAGGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGAAGGCGG
* ** ** *
13899640 TTGCCTCGATCACCATCGGCACGTGCT-GGCCCTTGGTGTGGGTGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCC-TGGTGAAGGCGG
* * * *
13899685 TTGCCTCGACCACTATCGGCAGAAGATGGGCCCTGGT-ACAAGCGG
1 TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGA-AGGCGG
*
13899730 TTACCTCGA
1 TTGCCTCGA
13899739 TCACTAATGA
Statistics
Matches: 77, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
44 5 0.06
45 67 0.87
46 5 0.06
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGGCACAAGCTGGGCCCTGGTGAAGGCGG
Found at i:13905562 original size:45 final size:45
Alignment explanation
Indices: 13905509--13905982 Score: 219
Period size: 45 Copynumber: 10.5 Consensus size: 45
13905499 GGTGAATACG
* *
13905509 TCGAACACCATCGACACACGCTGGGCCCTAGTGTGGGTGGTTACC
1 TCGAACACCATCGACACACGCTGGGCCCTGGTGTGGGTGGTTGCC
* * * * * * *
13905554 TCAAACACCATTGGCACAAGCT-GACCCATGGTGTAGGCT-CTTGCC
1 TCGAACACCATCGACACACGCTGGGCCC-TGGTGT-GGGTGGTTGCC
* * * ** * *
13905599 TCGACCACCATCGACACACGTTGGGCCTTGGTACGAGCGGTTGCC
1 TCGAACACCATCGACACACGCTGGGCCCTGGTGTGGGTGGTTGCC
**
13905644 TCGAACACCATCGACACACGCTGGGCCCTGGTACGGGCT-GTTGCC
1 TCGAACACCATCGACACACGCTGGGCCCTGGTGTGGG-TGGTTGCC
* * * * ** * *
13905689 TCGATCACCATCGGCATACCCTGGGCCCTGGTACGAGCT-ATTGCC
1 TCGAACACCATCGACACACGCTGGGCCCTGGTGTG-GGTGGTTGCC
* * ** * *
13905734 TCGAGCACCATCGACACACGCTGGGCCTTGGTACGAGCGGTTG-C
1 TCGAACACCATCGACACACGCTGGGCCCTGGTGTGGGTGGTTGCC
* * * * * * * *
13905778 TCCGAGCACCAT-TAGCACAAG-TTGACCCTTGGTGCGAGCT-CTTGCC
1 T-CGAACACCATCGA-CACACGCTGGGCCC-TGGTGTG-GGTGGTTGCC
* * * * * * * * * *
13905824 TGGACCACCATCAACAGAAGATGGCCCCTGGTGCGGGCGGTTGCG
1 TCGAACACCATCGACACACGCTGGGCCCTGGTGTGGGTGGTTGCC
* * * ** **
13905869 TCGAACACCATCGGCACACACTGGGCCCTAGTACGGACGGTTGCC
1 TCGAACACCATCGACACACGCTGGGCCCTGGTGTGGGTGGTTGCC
* * * * * *
13905914 TC-AATCACCATCGACACATGCTGGGCCCTAGTGCGGGCGCTTACC
1 TCGAA-CACCATCGACACACGCTGGGCCCTGGTGTGGGTGGTTGCC
* *
13905959 TCGATCACCATCGGCACACGCTGG
1 TCGAACACCATCGACACACGCTGG
13905983 TCGATCATCA
Statistics
Matches: 326, Mismatches: 86, Indels: 34
0.73 0.19 0.08
Matches are distributed among these distances:
44 15 0.05
45 295 0.90
46 16 0.05
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.19
Consensus pattern (45 bp):
TCGAACACCATCGACACACGCTGGGCCCTGGTGTGGGTGGTTGCC
Found at i:13905651 original size:90 final size:90
Alignment explanation
Indices: 13905509--13905982 Score: 287
Period size: 90 Copynumber: 5.3 Consensus size: 90
13905499 GGTGAATACG
* ** * * * * * *
13905509 TCGAACACCATCGACACACGCTGGGCCCTAGTGTGGGTGGTTACCTCAAACACCATTGGCACAAG
1 TCGAACACCATCGACACACGCTGGGCCCTGGTACGAGCGGTTGCCTCGAACACCATCGACACAAG
**
13905574 CT-GACCCATGGTGTAGGCTCTTGCC
66 CTGGACCC-TGGTACAGGCTCTTGCC
* * * *
13905599 TCGACCACCATCGACACACGTTGGGCCTTGGTACGAGCGGTTGCCTCGAACACCATCGACACACG
1 TCGAACACCATCGACACACGCTGGGCCCTGGTACGAGCGGTTGCCTCGAACACCATCGACACAAG
* * *
13905664 CTGGGCCCTGGTACGGGCTGTTGCC
66 CTGGACCCTGGTACAGGCTCTTGCC
* * * * ** * *
13905689 TCGATCACCATCGGCATACCCTGGGCCCTGGTACGAGCTATTGCCTCGAGCACCATCGACACACG
1 TCGAACACCATCGACACACGCTGGGCCCTGGTACGAGCGGTTGCCTCGAACACCATCGACACAAG
* * **
13905754 CTGGGCCTTGGTAC-GAGCGGTTG-C
66 CTGGACCCTGGTACAG-GCTCTTGCC
* * * * * * ** * * * *
13905778 TCCGAGCACCAT-TAGCACAAG-TTGACCCTTGGTGCGAGCTCTTGCCTGGACCACCATCAACAG
1 T-CGAACACCATCGA-CACACGCTGGGCCC-TGGTACGAGCGGTTGCCTCGAACACCATCGACAC
* * * * ** *
13905841 AAGATGGCCCCTGGTGCGGGCGGTTGCG
63 AAGCTGGACCCTGGTACAGGCTCTTGCC
* * *
13905869 TCGAACACCATCGGCACACACTGGGCCCTAGTACG-GACGGTTGCCTC-AATCACCATCGACACA
1 TCGAACACCATCGACACACGCTGGGCCCTGGTACGAG-CGGTTGCCTCGAA-CACCATCGACACA
* * * * * * *
13905932 TGCTGGGCCCTAGTGCGGGCGCTTACC
64 AGCTGGACCCTGGTACAGGCTCTTGCC
* *
13905959 TCGATCACCATCGGCACACGCTGG
1 TCGAACACCATCGACACACGCTGG
13905983 TCGATCATCA
Statistics
Matches: 300, Mismatches: 73, Indels: 22
0.76 0.18 0.06
Matches are distributed among these distances:
89 10 0.03
90 279 0.93
91 11 0.04
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.19
Consensus pattern (90 bp):
TCGAACACCATCGACACACGCTGGGCCCTGGTACGAGCGGTTGCCTCGAACACCATCGACACAAG
CTGGACCCTGGTACAGGCTCTTGCC
Found at i:13905698 original size:135 final size:134
Alignment explanation
Indices: 13905509--13905982 Score: 408
Period size: 135 Copynumber: 3.5 Consensus size: 134
13905499 GGTGAATACG
* * * *
13905509 TCGAACACCATCGACACACGCTGGGCCCTAGTGTGGG-TGGTTACCTCAAACACCATTGGCACAA
1 TCGAACACCATCGACACACGCTGGGCCCTAGTGCGGGCT-GTTACCTCGATCACCATCGGCACAA
* * * *
13905573 GCTGACCCATGGTGTAGGCTCTTGCCTCGACCACCATCGACACACGTTGGGCCTTGGTACGAGCG
65 GCTGGCCC-TGGTGTAGGCTATTGCCTCGAACACCATCGACACACGCTGGGCCTTGGTACGAGCG
13905638 GTTGCC
129 GTTGCC
* * * * **
13905644 TCGAACACCATCGACACACGCTGGGCCCTGGTACGGGCTGTTGCCTCGATCACCATCGGCATACC
1 TCGAACACCATCGACACACGCTGGGCCCTAGTGCGGGCTGTTACCTCGATCACCATCGGCACAAG
*
13905709 CTGGGCCCT-G-GTACGAGCTATTGCCTCGAGCACCATCGACACACGCTGGGCCTTGGTACGAGC
66 CT-GGCCCTGGTGTA-G-GCTATTGCCTCGAACACCATCGACACACGCTGGGCCTTGGTACGAGC
13905772 GGTTG-C
128 GGTTGCC
* * * * * * * * * * * ** *
13905778 TCCGAGCACCAT-TAGCACAAG-TTGACCCTTGGTGCGAGCTCTTGCCTGGACCACCATCAACAG
1 T-CGAACACCATCGA-CACACGCTGGGCCC-TAGTGCGGGCTGTTACCTCGATCACCATCGGCAC
* ** ** * * * * *
13905841 AAGATGGCCCCTGGTGCGGGCGGTTGCGTCGAACACCATCGGCACACACTGGGCCCTAGTACG-G
63 AAGCTGG-CCCTGGTGTAGGCTATTGCCTCGAACACCATCGACACACGCTGGGCCTTGGTACGAG
13905905 ACGGTTGCC
127 -CGGTTGCC
*
13905914 TC-AATCACCATCGACACATGCTGGGCCCTAGTGCGGGC-GCTTACCTCGATCACCATCGGCACA
1 TCGAA-CACCATCGACACACGCTGGGCCCTAGTGCGGGCTG-TTACCTCGATCACCATCGGCACA
*
13905977 CGCTGG
64 AGCTGG
13905983 TCGATCATCA
Statistics
Matches: 267, Mismatches: 56, Indels: 32
0.75 0.16 0.09
Matches are distributed among these distances:
133 3 0.01
134 14 0.05
135 234 0.88
136 15 0.06
137 1 0.00
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.19
Consensus pattern (134 bp):
TCGAACACCATCGACACACGCTGGGCCCTAGTGCGGGCTGTTACCTCGATCACCATCGGCACAAG
CTGGCCCTGGTGTAGGCTATTGCCTCGAACACCATCGACACACGCTGGGCCTTGGTACGAGCGGT
TGCC
Found at i:13906105 original size:45 final size:45
Alignment explanation
Indices: 13906056--13906275 Score: 158
Period size: 45 Copynumber: 4.9 Consensus size: 45
13906046 AGCCGGCCTT
* * *
13906056 TGGTGCGGGCTCTTGCCTCGACCACTATCGACACACGCTGGGCCC
1 TGGTGCGGGCTGTTGCCTCGAACACTATCGGCACACGCTGGGCCC
* * * * * *
13906101 TGGTGCGAGCGGTTGCCTTGAGCACTATCGGCACACACTGGGCTC
1 TGGTGCGGGCTGTTGCCTCGAACACTATCGGCACACGCTGGGCCC
* * *
13906146 TAGTGCGGG-TGGTTGCCTCGAACACCATCGGCACACGCCGGGCCC
1 TGGTGCGGGCT-GTTGCCTCGAACACTATCGGCACACGCTGGGCCC
** * * * * *
13906191 TATTAG-GGGCGGTTACCTTGATCACCATCGGCACACGCTGGG-CC
1 TGGT-GCGGGCTGTTGCCTCGAACACTATCGGCACACGCTGGGCCC
* * * * * * *
13906235 TCGATACGGGCGGTTGCTTCGAGCACCATCGGCACAAGCTG
1 T-GGTGCGGGCTGTTGCCTCGAACACTATCGGCACACGCTG
13906276 ACTCTTGGTG
Statistics
Matches: 139, Mismatches: 31, Indels: 10
0.77 0.17 0.06
Matches are distributed among these distances:
44 3 0.02
45 135 0.97
46 1 0.01
ACGTcount: A:0.16, C:0.32, G:0.31, T:0.20
Consensus pattern (45 bp):
TGGTGCGGGCTGTTGCCTCGAACACTATCGGCACACGCTGGGCCC
Found at i:13906250 original size:90 final size:90
Alignment explanation
Indices: 13906068--13906270 Score: 230
Period size: 90 Copynumber: 2.3 Consensus size: 90
13906058 GTGCGGGCTC
* * * * * * *
13906068 TTGCCTCGACCACTATCGACACACGCTGGGCCCTGGTGCGAGCGGTTGCCTTGAGCACTATCGGC
1 TTGCCTCGAACACCATCGGCACACGCCGGGCCCTAGTGCGAGCGGTTACCTTGAGCACCATCGGC
* * *
13906133 ACACACTGGGCTCTAGTGCGGGTGG
66 ACACACTGGGCTCGAGTACGGGCGG
* * *
13906158 TTGCCTCGAACACCATCGGCACACGCCGGGCCCTATTAG-GGGCGGTTACCTTGATCACCATCGG
1 TTGCCTCGAACACCATCGGCACACGCCGGGCCCTAGT-GCGAGCGGTTACCTTGAGCACCATCGG
*
13906222 CACACGCTGGGCCTCGA-TACGGGCGG
65 CACACACTGGG-CTCGAGTACGGGCGG
* *
13906248 TTGCTTCGAGCACCATCGGCACA
1 TTGCCTCGAACACCATCGGCACA
13906271 AGCTGACTCT
Statistics
Matches: 95, Mismatches: 16, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
90 90 0.95
91 5 0.05
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.20
Consensus pattern (90 bp):
TTGCCTCGAACACCATCGGCACACGCCGGGCCCTAGTGCGAGCGGTTACCTTGAGCACCATCGGC
ACACACTGGGCTCGAGTACGGGCGG
Found at i:13906500 original size:45 final size:44
Alignment explanation
Indices: 13906394--13906504 Score: 132
Period size: 45 Copynumber: 2.5 Consensus size: 44
13906384 TGCGAGCGGT
*
13906394 TGCCTCAACCACCATCGGCACACGCTGGCCCTTAGTGCAGGCAG
1 TGCCTCAACCACCATCGGCACACGCTGGCCCTTAGTGCAGGCAA
* * * * * *
13906438 TCGCATCGACCATCATCGGCACGCGCTGGCCCTTGGTGCGGGCACA
1 T-GCCTCAACCACCATCGGCACACGCTGGCCCTTAGTGCAGGCA-A
*
13906484 TGCCCCAACCACCATCGGCAC
1 TGCCTCAACCACCATCGGCAC
13906505 CTACTCACCC
Statistics
Matches: 54, Mismatches: 11, Indels: 3
0.79 0.16 0.04
Matches are distributed among these distances:
44 1 0.02
45 52 0.96
46 1 0.02
ACGTcount: A:0.19, C:0.41, G:0.25, T:0.15
Consensus pattern (44 bp):
TGCCTCAACCACCATCGGCACACGCTGGCCCTTAGTGCAGGCAA
Found at i:13913543 original size:40 final size:40
Alignment explanation
Indices: 13913499--13913578 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 40
13913489 ACCGCGGGGG
*
13913499 GGGATGCGCGAGCCGACCCAGGATCCCGCTGCCGGTCCCC
1 GGGATGCGCGAGCCGACCAAGGATCCCGCTGCCGGTCCCC
* **
13913539 GGGATGCGCGAGCCGGCCAAGGATCCCGCTGTTGGTCCCC
1 GGGATGCGCGAGCCGACCAAGGATCCCGCTGCCGGTCCCC
13913579 CTCGGTCGTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 36 1.00
ACGTcount: A:0.12, C:0.39, G:0.36, T:0.12
Consensus pattern (40 bp):
GGGATGCGCGAGCCGACCAAGGATCCCGCTGCCGGTCCCC
Found at i:13913958 original size:26 final size:26
Alignment explanation
Indices: 13913929--13913981 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13913919 CCGGTCCGAT
*
13913929 CTTAGACCGGGAATGAGCTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
*
13913955 CTTAGATCGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCGTATG
13913981 C
1 C
13913982 CTAAGTCATC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCGTATG
Found at i:13915022 original size:45 final size:44
Alignment explanation
Indices: 13914964--13915118 Score: 130
Period size: 45 Copynumber: 3.5 Consensus size: 44
13914954 TGGGCATTTA
* * * * *
13914964 CCTCAACCGCCATCGGCATAAGCTGGGCCCTGGTGTGGGCGGTTG
1 CCTCGACCACCATCGACACAAG-TGGGCCCTGGTGCGGGCGGTTG
* ** * * *
13915009 GCTTTATCACCATCGACACATGTTGGCCCTTGGTGCGGGCGGTTG
1 CCTCGACCACCATCGACACAAGTGGGCCC-TGGTGCGGGCGGTTG
* * *
13915054 CCTCGACCACCATCGACAGAAGATGGGCCCTGGTGCAGGCAGTTG
1 CCTCGACCACCATCGACACAAG-TGGGCCCTGGTGCGGGCGGTTG
** *
13915099 CCTTAAACACCATCGACACA
1 CCTCGACCACCATCGACACA
13915119 CGCTAGTCGA
Statistics
Matches: 85, Mismatches: 23, Indels: 4
0.76 0.21 0.04
Matches are distributed among these distances:
44 6 0.07
45 73 0.86
46 6 0.07
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (44 bp):
CCTCGACCACCATCGACACAAGTGGGCCCTGGTGCGGGCGGTTG
Found at i:13915042 original size:90 final size:90
Alignment explanation
Indices: 13914929--13915118 Score: 202
Period size: 90 Copynumber: 2.1 Consensus size: 90
13914919 CATCGACCAT
* * * * * *
13914929 CATCGACACAGGCTGCCCTTTGGTATGGGCATTTACCTCAACCGCCATCGGCATAAGCTGGGCCC
1 CATCGACACAGGCTGCCCTTTGGTACGGGCAGTTACCTCAACCACCATCGACAGAAGATGGGCCC
** * * * *
13914994 TGGTGTGGGCGGTTGGCTTTATCAC
66 TGGTGCAGGCAGTTGCCTTAAACAC
* * * * * *
13915019 CATCGACACATGTTGGCCC-TTGGTGCGGGCGGTTGCCTCGACCACCATCGACAGAAGATGGGCC
1 CATCGACACAGGCT-GCCCTTTGGTACGGGCAGTTACCTCAACCACCATCGACAGAAGATGGGCC
13915083 CTGGTGCAGGCAGTTGCCTTAAACAC
65 CTGGTGCAGGCAGTTGCCTTAAACAC
13915109 CATCGACACA
1 CATCGACACA
13915119 CGCTAGTCGA
Statistics
Matches: 81, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
90 77 0.95
91 4 0.05
ACGTcount: A:0.19, C:0.30, G:0.28, T:0.22
Consensus pattern (90 bp):
CATCGACACAGGCTGCCCTTTGGTACGGGCAGTTACCTCAACCACCATCGACAGAAGATGGGCCC
TGGTGCAGGCAGTTGCCTTAAACAC
Found at i:13915293 original size:45 final size:45
Alignment explanation
Indices: 13915244--13915370 Score: 119
Period size: 45 Copynumber: 2.8 Consensus size: 45
13915234 GTACGACCAG
**
13915244 TTGCCTCGATTTCCATCGACACACGCAGGGCCCTGGTGCAGCCGA
1 TTGCCTCGATCACCATCGACACACGCAGGGCCCTGGTGCAGCCGA
* * * ** * * *
13915289 TTGCCTCCAGCACCATCGACACGCGTTGGGCCCTGGTGCGGGCGG
1 TTGCCTCGATCACCATCGACACACGCAGGGCCCTGGTGCAGCCGA
* * * * *
13915334 TTGCCTCGATCAACATTGGCACACACTGGGCCCTGGT
1 TTGCCTCGATCACCATCGACACACGCAGGGCCCTGGT
13915371 ATGGGTGGTG
Statistics
Matches: 64, Mismatches: 18, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
45 64 1.00
ACGTcount: A:0.16, C:0.35, G:0.29, T:0.20
Consensus pattern (45 bp):
TTGCCTCGATCACCATCGACACACGCAGGGCCCTGGTGCAGCCGA
Found at i:13915411 original size:54 final size:54
Alignment explanation
Indices: 13915322--13915458 Score: 168
Period size: 54 Copynumber: 2.5 Consensus size: 54
13915312 CGTTGGGCCC
* * * * *
13915322 TGGTGCGGGCGGTTGCCTCGATCAACATTGGCACACACTGGGCCCTGGTATGGG
1 TGGTGCGGGCGGTTGCCTCGATCACCATCGACACACACTAGGCCCTGGTACGGG
* *
13915376 TGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGCTAGGCCCTGGTGCGGG
1 TGGTGCGGGCGGTTGCCTCGATCACCATCGACACACACTAGGCCCTGGTACGGG
* * *
13915430 CGGTGCAGGCGGTTGCTTCGAGT-ACCATC
1 TGGTGCGGGCGGTTGCCTCGA-TCACCATC
13915459 AGCAAATGTT
Statistics
Matches: 72, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
54 71 0.99
55 1 0.01
ACGTcount: A:0.14, C:0.28, G:0.36, T:0.21
Consensus pattern (54 bp):
TGGTGCGGGCGGTTGCCTCGATCACCATCGACACACACTAGGCCCTGGTACGGG
Found at i:13915602 original size:44 final size:45
Alignment explanation
Indices: 13915471--13915633 Score: 220
Period size: 45 Copynumber: 3.6 Consensus size: 45
13915461 CAAATGTTGG
* * * * * *
13915471 TCGATCACCATTGGTACACGTTAGGCCCTGGTACGAGCGGTTACC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCC
*
13915516 TCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGTGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCC
* * *
13915561 TCGAGCACCA-CGGCACACGCTGGGCCTTGGTGCGGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCC
*
13915605 TCGATCACCATCGGCACACACTGGGCCCT
1 TCGATCACCATCGGCACACGCTGGGCCCT
13915634 AGTGTGGGTG
Statistics
Matches: 103, Mismatches: 14, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
44 40 0.39
45 63 0.61
ACGTcount: A:0.16, C:0.34, G:0.31, T:0.20
Consensus pattern (45 bp):
TCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGCGGTTGCC
Found at i:13915691 original size:212 final size:213
Alignment explanation
Indices: 13915376--13915858 Score: 558
Period size: 212 Copynumber: 2.3 Consensus size: 213
13915366 CTGGTATGGG
* *
13915376 TGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGCTAGGCCCTGGTGCGGGCGGTGCAGGCG
1 TGGTGCGGGCGGTTGCCTCGATCACCATCGACACACACTAGGCCCTAGTGCGGGCGGTGCAGGCG
* * *** * ** *
13915441 GTTGCTTCGAGTACCATCAGCAAATGTTGGTCGATCACCATTGGTACACGTTAGGCC-CTGGTAC
66 GTTGCCTCGAGCACCATCAGCAAACACTGGTCGATCACCATCGACACACGCTAGGCCTC-GGTAC
* * *
13915505 GAGCGGTTACCTCGATCACCATCGGCACACGCTGGGC-CCTGGTACGGGTGGTTGCCTCGAGCAC
130 GAGCGGCTACCTCGATCACCATCGACACACGCTGGGCACC-GGTACGGGTGGTTGCCTCGAACAC
*
13915569 CA-CGGCACACGCTGGGCCT
194 CACCGGCACACGCTGGGCCC
* * * * **
13915588 TGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACACTGGGCCCTAGTGTGGGTGGTGTGGGCG
1 TGGTGCGGGCGGTTGCCTCGATCACCATCGACACACACTAGGCCCTAGTGCGGGCGGTGCAGGCG
* ** * * **
13915653 GTTTCCTCGAGCACCATTGGCACACACTGGTTGATCACCATCGACACACGCTAGGCCTCGGTGTG
66 GTTGCCTCGAGCACCATCAGCAAACACTGGTCGATCACCATCGACACACGCTAGGCCTCGGTACG
* *
13915718 AGCGGCTGCCTCGATCACCATCGACACACGCTGGGCACCGGTGCGGGTGGTTGCCTCGAACACCA
131 AGCGGCTACCTCGATCACCATCGACACACGCTGGGCACCGGTACGGGTGGTTGCCTCGAACACCA
*
13915783 CCGGCACATGCTGGGCCC
196 CCGGCACACGCTGGGCCC
* * * * * *** * *
13915801 TAGTACGGGTGGTTGCGTCGAACACCATCGACACATGTTGGGCCCTGGTGCGGGCGGT
1 TGGTGCGGGCGGTTGCCTCGATCACCATCGACACACACTAGGCCCTAGTGCGGGCGGT
13915859 TGCAACGATC
Statistics
Matches: 225, Mismatches: 43, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
212 161 0.72
213 64 0.28
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.20
Consensus pattern (213 bp):
TGGTGCGGGCGGTTGCCTCGATCACCATCGACACACACTAGGCCCTAGTGCGGGCGGTGCAGGCG
GTTGCCTCGAGCACCATCAGCAAACACTGGTCGATCACCATCGACACACGCTAGGCCTCGGTACG
AGCGGCTACCTCGATCACCATCGACACACGCTGGGCACCGGTACGGGTGGTTGCCTCGAACACCA
CCGGCACACGCTGGGCCC
Found at i:13915760 original size:45 final size:45
Alignment explanation
Indices: 13915685--13915897 Score: 144
Period size: 45 Copynumber: 4.7 Consensus size: 45
13915675 CACACTGGTT
* *
13915685 GATCACCATCGACACACGCTAGGCCTCGGTGTGAGCGGCTGCCTC
1 GATCACCATCGACACACGCTGGGCCTCGGTGCGAGCGGCTGCCTC
* * *
13915730 GATCACCATCGACACACGCTGGGCAC-CGGTGCGGGTGGTTGCCTC
1 GATCACCATCGACACACGCTGGGC-CTCGGTGCGAGCGGCTGCCTC
* * * * * * * * * *
13915775 GAACACCACCGGCACATGCTGGGCC-CTAGTACGGGTGGTTGCGTC
1 GATCACCATCGACACACGCTGGGCCTC-GGTGCGAGCGGCTGCCTC
* * * * * **
13915820 GAACACCATCGACACATGTTGGGCC-CTGGTGCGGGCGGTTGCAAC
1 GATCACCATCGACACACGCTGGGCCTC-GGTGCGAGCGGCTGCCTC
* * * *
13915865 GATCACCATCGTCACACTCTGAGCCTTGGTGCG
1 GATCACCATCGACACACGCTGGGCCTCGGTGCG
13915898 GGTTTCACGG
Statistics
Matches: 138, Mismatches: 27, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
44 2 0.01
45 135 0.98
46 1 0.01
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (45 bp):
GATCACCATCGACACACGCTGGGCCTCGGTGCGAGCGGCTGCCTC
Found at i:13920821 original size:21 final size:21
Alignment explanation
Indices: 13920806--13920848 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
13920796 CTCCATCCGC
13920806 TGGCGCATGGCCTCCATGCCA
1 TGGCGCATGGCCTCCATGCCA
*
13920827 TGGCGCATGGCCTCTATGCCA
1 TGGCGCATGGCCTCCATGCCA
13920848 T
1 T
13920849 CTCGCAAAGT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.14, C:0.35, G:0.28, T:0.23
Consensus pattern (21 bp):
TGGCGCATGGCCTCCATGCCA
Found at i:13920854 original size:21 final size:21
Alignment explanation
Indices: 13920808--13920854 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
13920798 CCATCCGCTG
*
13920808 GCGCATGGCCTCCATGCCATG
1 GCGCATGGCCTCCATGCCATC
*
13920829 GCGCATGGCCTCTATGCCATC
1 GCGCATGGCCTCCATGCCATC
*
13920850 TCGCA
1 GCGCA
13920855 AAGTCAGCAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.15, C:0.38, G:0.26, T:0.21
Consensus pattern (21 bp):
GCGCATGGCCTCCATGCCATC
Found at i:13921881 original size:45 final size:45
Alignment explanation
Indices: 13921818--13922875 Score: 513
Period size: 45 Copynumber: 23.6 Consensus size: 45
13921808 TGACACTGGG
* * * * *
13921818 GGTTGCCTCGATCACCATCGGCACACGTTAGGCCCTGGTACGAGT
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * * *
13921863 GGTTACCTCAAGCACCATCGGCACATGTTGGGCCCTGGTACGGGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * * *
13921908 GGTTGCCTCGATCACCATCGTCACAGGCTGGGCCCTGGTGCAGGG-
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTAC-GGGC
* * * * * * *
13921953 GGTTACCCCAATCACCATCGTCACAGGCTGGGCCCTAGTGCGGGG
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * *
13921998 GGTTGCCTCGATCACCATCGACACACGCTGGGCCCTGGTATGGGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * * * * * * * *
13922043 GGTTACCTCGACCACCATTGACAGATGATGGCCCCTGGTGCGAGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * * * *** * *
13922088 GGTGGTA-C-CAAACACCATCGACAAATATTGGG-CCTGGTGCAGGC
1 GGT--TACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * * * ** ** * ***
13922132 GATTACCTCAAACACCATCGACACGTGCTGGGCTTTGGTGCGAAA
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * * * * * * **
13922177 GGTTGCCTTGAGCACCATCGGCATAAGC-CGACCCTTGGTGTGGGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCC-TGGTACGGGC
** * * * * * * *
13922222 TTTTGCCTCGATCACCATCGACAGAAGATGGCCCCTGGTGCGGGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * * * * * *** *
13922267 GGTTACGTCGAACACCATCGGCATACGTTAGGCCTTGGTGTAGGT
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * * *
13922312 GGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTAGTGCGGGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* ** * * * *** *
13922357 GGTTACCTCGAGCACCATCGATAGAAC-AT-GGCTACTGGTGTAGGT
1 GGTTACCTCGATCACCATCGGCA-CACGCTGGGC-CCTGGTACGGGC
* * * *
13922402 GGTTGCCTTGATCACCATCGACACACGCTGGGCCTTGGTGA-GGGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGT-ACGGGC
* ** * * * * *
13922447 AGTCGCCTCGACCACCATCGCCACATG-TCGGCCCTTGGTGCGGGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCC-TGGTACGGGC
* * * * * * *
13922492 AGTTGCTTCGAACACCATTGACACACGCTGGGCCCTGGTGCGGGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * * **
13922537 AGTTGCCTCGATCACCATCGGCACACGCAT-GGCCTTGGTGTGGGC
1 GGTTACCTCGATCACCATCGGCACACGC-TGGGCCCTGGTACGGGC
* * * * * *
13922582 GGTTACCTCGAACACTATCGGCACAAGCTGAG-CCTCGGTGCAGGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCT-GGTACGGGC
** * * * *
13922627 TCTTA-CTCGACCACCATCGACACACGTTGGGCCCTGGTGCGGGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* ** * * *
13922671 GGTTGCCTCGGGCACCATCGACACACACTGGGCCCTGGT-GGGGAC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGG-C
* * * * * * *
13922716 GGTTGCCTTGAACACCATCAGCACACGCTAGGCCTTGTTACGGGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * *
13922761 GGTTGCCTCGATCACCATCGGCACACGCTGGGCCCTAGTACGGGT
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * * * * *
13922806 GGTTACCTCGAGCACCATTGACACATGCTGGGCCTTGGTACGAGC
1 GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
* * * *
13922851 GGTTGCTTCGAGCACCATCGACACA
1 GGTTACCTCGATCACCATCGGCACA
13922876 AGCCGACCCT
Statistics
Matches: 780, Mismatches: 209, Indels: 48
0.75 0.20 0.05
Matches are distributed among these distances:
42 2 0.00
43 1 0.00
44 83 0.11
45 669 0.86
46 23 0.03
47 2 0.00
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.21
Consensus pattern (45 bp):
GGTTACCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGC
Found at i:13922047 original size:90 final size:90
Alignment explanation
Indices: 13921818--13922916 Score: 637
Period size: 90 Copynumber: 12.2 Consensus size: 90
13921808 TGACACTGGG
* * * * * * * *
13921818 GGTTGCCTCGATCACCATCGGCACACGTTAGGCCCTGGTACGAGTGGTTACCTCAAGCACCATCG
1 GGTTGCCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCAATCACCATCG
* * * *
13921883 GCACATGTTGGGCCCTGGTACGGGC
66 ACACACGCTGGGCCCTGGTGCGGGC
* * * *
13921908 GGTTGCCTCGATCACCATCGTCACAGGCTGGGCCCTGGTGCAGGG-GGTTACCCCAATCACCATC
1 GGTTGCCTCGATCACCATCGACACACGCTGGGCCCTGGTGC-GGGCGGTTGCCTCAATCACCATC
* * * *
13921972 GTCACAGGCTGGGCCCTAGTGCGGGG
65 GACACACGCTGGGCCCTGGTGCGGGC
** * * * *
13921998 GGTTGCCTCGATCACCATCGACACACGCTGGGCCCTGGTATGGGCGGTTACCTCGACCACCATTG
1 GGTTGCCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCAATCACCATCG
* * * * *
13922063 ACAGATGATGGCCCCTGGTGCGAGC
66 ACACACGCTGGGCCCTGGTGCGGGC
* * * * * *** * * * *
13922088 GGTGGTAC-CAAACACCATCGACAAATATTGGG-CCTGGTGCAGGCGATTACCTCAAACACCATC
1 GGTTG-CCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCAATCACCATC
** ** ***
13922151 GACACGTGCTGGGCTTTGGTGCGAAA
65 GACACACGCTGGGCCCTGGTGCGGGC
* * * * * * * * ** *
13922177 GGTTGCCTTGAGCACCATCGGCATAAGC-CGACCCTTGGTGTGGGCTTTTGCCTCGATCACCATC
1 GGTTGCCTCGATCACCATCGACACACGCTGGGCCC-TGGTGCGGGCGGTTGCCTCAATCACCATC
* * * *
13922241 GACAGAAGATGGCCCCTGGTGCGGGC
65 GACACACGCTGGGCCCTGGTGCGGGC
* * * * * * * * ** *
13922267 GGTTACGTCGAACACCATCGGCATACGTTAGGCCTTGGTGTAGGTGGTTGCCTCGAA-CACCATC
1 GGTTGCCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTC-AATCACCATC
* *
13922331 GGCACACGCTGGGCCCTAGTGCGGGC
65 GACACACGCTGGGCCCTGGTGCGGGC
* * * * * * ** * **
13922357 GGTTACCTCGAGCACCATCGATAGAAC-AT-GGCTACTGGTGTAGGTGGTTGCCTTGATCACCAT
1 GGTTGCCTCGATCACCATCGACA-CACGCTGGGC-CCTGGTGCGGGCGGTTGCCTCAATCACCAT
* *
13922420 CGACACACGCTGGGCCTTGGTGAGGGC
64 CGACACACGCTGGGCCCTGGTGCGGGC
* * * * * * * *
13922447 AGTCGCCTCGACCACCATCGCCACATG-TCGGCCCTTGGTGCGGGCAGTTGCTTCGAA-CACCAT
1 GGTTGCCTCGATCACCATCGACACACGCTGGGCCC-TGGTGCGGGCGGTTGCCTC-AATCACCAT
*
13922510 TGACACACGCTGGGCCCTGGTGCGGGC
64 CGACACACGCTGGGCCCTGGTGCGGGC
* * * * * *
13922537 AGTTGCCTCGATCACCATCGGCACACGCAT-GGCCTTGGTGTGGGCGGTTACCTCGAA-CACTAT
1 GGTTGCCTCGATCACCATCGACACACGC-TGGGCCCTGGTGCGGGCGGTTGCCTC-AATCACCAT
* * * *
13922600 CGGCACAAGCTGAG-CCTCGGTGCAGGC
64 CGACACACGCTGGGCCCT-GGTGCGGGC
** * * * ***
13922627 TCTT-ACTCGACCACCATCGACACACGTTGGGCCCTGGTGCGGGCGGTTGCCTCGGGCACCATCG
1 GGTTGCCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCAATCACCATCG
*
13922691 ACACACACTGGGCCCTGGTG-GGGAC
66 ACACACGCTGGGCCCTGGTGCGGG-C
* * * * * * *
13922716 GGTTGCCTTGAACACCATC-AGCACACGCTAGGCCTTGTTACGGGCGGTTGCCTCGATCACCATC
1 GGTTGCCTCGATCACCATCGA-CACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCAATCACCATC
* * * *
13922780 GGCACACGCTGGGCCCTAGTACGGGT
65 GACACACGCTGGGCCCTGGTGCGGGC
* * * * * * * * * *
13922806 GGTTACCTCGAGCACCATTGACACATGCTGGGCCTTGGTACGAGCGGTTGCTTCGAGCACCATCG
1 GGTTGCCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCAATCACCATCG
* * * *
13922871 ACACAAGC-CGACCCTTGGTGCGAGC
66 ACACACGCTGGGCCC-TGGTGCGGGC
** *
13922896 TCTTGCCTCGACCACCATCGA
1 GGTTGCCTCGATCACCATCGA
13922917 TAGAAGATGG
Statistics
Matches: 775, Mismatches: 207, Indels: 54
0.75 0.20 0.05
Matches are distributed among these distances:
88 5 0.01
89 140 0.18
90 611 0.79
91 18 0.02
92 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.20
Consensus pattern (90 bp):
GGTTGCCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCAATCACCATCG
ACACACGCTGGGCCCTGGTGCGGGC
Found at i:13922059 original size:135 final size:135
Alignment explanation
Indices: 13921818--13922878 Score: 717
Period size: 135 Copynumber: 7.9 Consensus size: 135
13921808 TGACACTGGG
* * * * * * * * * *
13921818 GGTTGCCTCGATCACCATCGGCACACGTTAGGCCCTGGTACGAGTGGTTACCTCAAGCACCATCG
1 GGTTACCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCG
* * * * * * *
13921883 GCACATGTTGGGCCCTGGTACGGGCGGTTGCCTCGATCACCATCGTCACAGGCTGGGCCCTGGTG
66 ACACACGCTGGGCCTTGGTACGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTG
13921948 CAGGG-
131 C-GGGC
* * * * * *
13921953 GGTTACCCCAATCACCATCGTCACAGGCTGGGCCCTAGTGCGGGGGGTTGCCTCGATCACCATCG
1 GGTTACCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCG
* * * * * * * * * *
13922018 ACACACGCTGGGCCCTGGTATGGGCGGTTACCTCGACCACCATTGACAGATGATGGCCCCTGGTG
66 ACACACGCTGGGCCTTGGTACGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTG
*
13922083 CGAGC
131 CGGGC
* * * *** * * * * *
13922088 GGTGGTA-C-CAAACACCATCGACAAATATTGGG-CCTGGTGCAGGCGATTACCTCAAACACCAT
1 GGT--TACCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCAT
** * * *** * * * * *
13922150 CGACACGTGCTGGGCTTTGGTGCGAAAGGTTGCCTTGAGCACCATCGGCATAAGC-CGACCCTTG
64 CGACACACGCTGGGCCTTGGTACGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCC-TG
*
13922214 GTGTGGGC
128 GTGCGGGC
** * * * * * * * *
13922222 TTTTGCCTCGATCACCATCGACAGAAGATGGCCCCTGGTGCGGGCGGTTACGTCGAACACCATCG
1 GGTTACCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCG
* * * * *** * * *
13922287 GCATACGTTAGGCCTTGGTGTAGGTGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTAGTG
66 ACACACGCTGGGCCTTGGTACGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTG
13922352 CGGGC
131 CGGGC
* * * * * ** * *
13922357 GGTTACCTCGAGCACCATCGATAGAAC-AT-GGCTACTGGTGTAGGTGGTTGCCTTGATCACCAT
1 GGTTACCTCGATCACCATCGACA-CACGCTGGGC-CCTGGTGCGGGCGGTTGCCTCGATCACCAT
* * * * * *
13922420 CGACACACGCTGGGCCTTGGTGA-GGGCAGTCGCCTCGACCACCATCGCCACATG-TCGGCCCTT
64 CGACACACGCTGGGCCTTGGT-ACGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCC-T
13922483 GGTGCGGGC
127 GGTGCGGGC
* * * * * *
13922492 AGTTGCTTCGAACACCATTGACACACGCTGGGCCCTGGTGCGGGCAGTTGCCTCGATCACCATCG
1 GGTTACCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCG
* ** * * *
13922557 GCACACGCAT-GGCCTTGGTGTGGGCGGTTACCTCGAACACTATCGGCACAAGCTGAG-CCTCGG
66 ACACACGC-TGGGCCTTGGTACGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCT-GG
*
13922620 TGCAGGC
129 TGCGGGC
** * * **
13922627 TCTTA-CTCGACCACCATCGACACACGTTGGGCCCTGGTGCGGGCGGTTGCCTCGGGCACCATCG
1 GGTTACCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCG
* * * * * * * * *
13922691 ACACACACTGGGCCCTGGT-GGGGACGGTTGCCTTGAACACCATCAGCACACGCTAGGCCTTGTT
66 ACACACGCTGGGCCTTGGTACGGG-CGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGT
*
13922755 ACGGGC
130 GCGGGC
* * * * * * * *
13922761 GGTTGCCTCGATCACCATCGGCACACGCTGGGCCCTAGTACGGGTGGTTACCTCGAGCACCATTG
1 GGTTACCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCG
* * * * *
13922826 ACACATGCTGGGCCTTGGTACGAGCGGTTGCTTCGAGCACCATCGACACAAGC
66 ACACACGCTGGGCCTTGGTACGGGCGGTTGCCTCGAACACCATCGGCACAAGC
13922879 CGACCCTTGG
Statistics
Matches: 704, Mismatches: 199, Indels: 46
0.74 0.21 0.05
Matches are distributed among these distances:
132 1 0.00
133 9 0.01
134 200 0.28
135 478 0.68
136 14 0.02
137 2 0.00
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.20
Consensus pattern (135 bp):
GGTTACCTCGATCACCATCGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCG
ACACACGCTGGGCCTTGGTACGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTG
CGGGC
Found at i:13922887 original size:45 final size:45
Alignment explanation
Indices: 13922811--13922916 Score: 122
Period size: 45 Copynumber: 2.4 Consensus size: 45
13922801 CGGGTGGTTA
* * * ** *
13922811 CCTCGAGCACCATTGACACATGCTGGGCCTTGGTACGAGCGGTTG
1 CCTCGAGCACCATCGACACAAGCCGACCCTTGGTACGAGCGCTTG
* * *
13922856 CTTCGAGCACCATCGACACAAGCCGACCCTTGGTGCGAGCTCTTG
1 CCTCGAGCACCATCGACACAAGCCGACCCTTGGTACGAGCGCTTG
*
13922901 CCTCGACCACCATCGA
1 CCTCGAGCACCATCGA
13922917 TAGAAGATGG
Statistics
Matches: 50, Mismatches: 11, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
45 50 1.00
ACGTcount: A:0.20, C:0.35, G:0.25, T:0.20
Consensus pattern (45 bp):
CCTCGAGCACCATCGACACAAGCCGACCCTTGGTACGAGCGCTTG
Found at i:13928145 original size:26 final size:26
Alignment explanation
Indices: 13928116--13928168 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13928106 CCTGTCCGAT
13928116 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
13928142 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13928168 C
1 C
13928169 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13928469 original size:345 final size:345
Alignment explanation
Indices: 13928071--13928698 Score: 947
Period size: 345 Copynumber: 1.8 Consensus size: 345
13928061 GGGATCAGCC
*
13928071 CGATCCCCCTCTGCGTGCTGCTGTCGATCTGGCTGCCTGTCCGATCTTAGACTGGGAATGAACTC
1 CGATCCCCCTCTGCGTGCTGCTGTCGATCTGGCTGCCGGTCCGATCTTAGACTGGGAATGAACTC
* *
13928136 CATATGCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCG
66 CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCG
* * * * * ***
13928201 CTCAGTCGACCGAAGAGGCATAATGCGTAAGCTAGGGATCTACCCGGTCCCCTTCTGTGTGCTAC
131 CTCAGCCGACCGAAGAAGAATAATGCGTAAGCTAGGGATCGACCCGGTCCCCCTCTACATGCTAC
* *
13928266 CGATCCTACTG-TCGGTCCAGCTGCCACAACCCTCTG-TCCGACTGGGGCTTAGACATGGAATGA
196 CGATCCCACTGCT-GGTCCAGCTACCACAACCCTC-GATCCGACTGGGGCTTAGACATGGAATGA
*
13928329 ACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAGCCAATCAGAGAGCCAGA
259 ACTCCATATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAGCCAATCAGAGAGCCAGA
13928394 ATGTGCAAGCTGAGGATCGACT
324 ATGTGCAAGCTGAGGATCGACT
* *
13928416 CGATCTCCCTCTGCGTGCTGCTGTCGATCCT-GCTGCCGGTCTGATCTTAGACTGGGAATGAACT
1 CGATCCCCCTCTGCGTGCTGCTGTCGAT-CTGGCTGCCGGTCCGATCTTAGACTGGGAATGAACT
* ** *
13928480 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGT
65 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGC
* * * * * **
13928545 GCTGAGCCGACCGGAGAAGAATAATGTGTAAGCTGGGGATCGGCTTGGTCCCCCTCTACATGCTA
130 GCTCAGCCGACCGAAGAAGAATAATGCGTAAGCTAGGGATCGACCCGGTCCCCCTCTACATGCTA
*
13928610 CCGATCCCACTGCTGGTCCAGCTACCACAACCCTCGATCCGTCTGGGGCTTAGACATGGAATGAA
195 CCGATCCCACTGCTGGTCCAGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAA
*
13928675 CTCCATATGCCTAAGTCAACCCAC
260 CTCCATATGCCTAAGCCAACCCAC
13928699 GAAACGATCG
Statistics
Matches: 251, Mismatches: 29, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
344 1 0.00
345 247 0.98
346 3 0.01
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (345 bp):
CGATCCCCCTCTGCGTGCTGCTGTCGATCTGGCTGCCGGTCCGATCTTAGACTGGGAATGAACTC
CATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCG
CTCAGCCGACCGAAGAAGAATAATGCGTAAGCTAGGGATCGACCCGGTCCCCCTCTACATGCTAC
CGATCCCACTGCTGGTCCAGCTACCACAACCCTCGATCCGACTGGGGCTTAGACATGGAATGAAC
TCCATATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCAGCCAATCAGAGAGCCAGAAT
GTGCAAGCTGAGGATCGACT
Found at i:13928497 original size:26 final size:26
Alignment explanation
Indices: 13928461--13928513 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13928451 CCGGTCTGAT
13928461 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
13928487 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
13928513 C
1 C
13928514 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:13928515 original size:174 final size:172
Alignment explanation
Indices: 13927967--13928552 Score: 473
Period size: 174 Copynumber: 3.4 Consensus size: 172
13927957 TCTGGCTGGG
* * * ** *
13927967 GCTTAGA-TCGGGAATGAACCCCGTATGCCTAAATCAACCC-CTGAAATGAGCGTGCGGGCATTG
1 GCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCAC-GAAATGAGCGTGTGGGCGCTC
* * * * * **
13928030 AGCCGATC-GAAGGGGCAGGATGCGTAAGCCGGGGATC-AGCCCGATCCCCCTCTGCGTGCTGCT
64 AGCC-AACAGAAGAGCCAGAATGCGCAAGCTAGGGATCGA-CCCGAT-CCCCTCTGCGTGCTGCT
*
13928093 GTCGAT-CTGGCTGCCTGTCCGATCTTAGACTGGGAATGAACTCCATAT
126 GTCGATCCT-GCTGCCGGT-CGATCTTAGACTGGGAATGAACTCCATAT
* **
13928141 GCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCGCTCAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAG
* * * * * * * * **
13928206 TCGACCGAAGAGGCATAATGCGTAAGCTAGGGATCTACCCGGTCCCCT-T-CTGTG-TGCTACCG
66 CCAACAGAAGAGCCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCTCTGC-GTGCTGCTGTCG
* * * * *** **** **
13928268 ATCCTACTGTCGGTCCAGC-T-G-C-CACAACCCTCTGTCCGACTGGG
130 ATCCTGCTGCCGGTCGATCTTAGACTGGGAATGAAC--TCC-A-T-AT
* *
13928312 GCTTAGACAT-GGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGCGTGTGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCA
* *
13928376 GCCAATCAG-AGAGCCAGAATGTGCAAGCT-GAGGATCGACTCGATCTCCCTCTGCGTGCTGCTG
65 GCCAA-CAGAAGAGCCAGAATGCGCAAGCTAG-GGATCGACCCGATC-CCCTCTGCGTGCTGCTG
13928439 TCGATCCTGCTGCCGGTCTGATCTTAGACTGGGAATGAACTCCATAT
127 TCGATCCTGCTGCCGGTC-GATCTTAGACTGGGAATGAACTCCATAT
* * * *
13928486 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAG
13928551 CC
66 CC
13928553 GACCGGAGAA
Statistics
Matches: 320, Mismatches: 68, Indels: 48
0.73 0.16 0.11
Matches are distributed among these distances:
166 3 0.01
167 1 0.00
168 4 0.01
169 2 0.01
170 5 0.02
171 102 0.32
172 13 0.04
173 11 0.03
174 163 0.51
175 6 0.02
176 2 0.01
177 4 0.01
178 1 0.00
179 3 0.01
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (172 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGTGGGCGCTCAG
CCAACAGAAGAGCCAGAATGCGCAAGCTAGGGATCGACCCGATCCCCTCTGCGTGCTGCTGTCGA
TCCTGCTGCCGGTCGATCTTAGACTGGGAATGAACTCCATAT
Found at i:13929574 original size:45 final size:45
Alignment explanation
Indices: 13929466--13929574 Score: 110
Period size: 45 Copynumber: 2.4 Consensus size: 45
13929456 TTGCGTCAAC
* * * * *
13929466 CACCATCGGCACAAGCTGGGCCCTGGTGCGGGTGGTTGTCTTGAT
1 CACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAA
* * * * *
13929511 GACAATTGGCATATGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAA
1 CACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAA
* *
13929556 CACCATCGACACACGCTGG
1 CACCATCGGCACAAGCTGG
13929575 TCGATCACCA
Statistics
Matches: 48, Mismatches: 16, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.21
Consensus pattern (45 bp):
CACCATCGGCACAAGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAA
Found at i:13929669 original size:104 final size:103
Alignment explanation
Indices: 13929527--13929781 Score: 323
Period size: 103 Copynumber: 2.5 Consensus size: 103
13929517 TGGCATATGC
* *
13929527 TGGGCCCTGGTGCAGGCGGTTGCCTCGAACACCATCGACACACGCTGGTCGATCACCATTGGCCC
1 TGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACACGCTGGTCGATCACCATCGGCCC
* * *
13929592 TTGGTGCTGGCAGTTGCCTCGACCACCATCAGTAGAAC-A
66 -TGGTGCGGGCAGTTACCTCGACCACCATCAGCA-AACGA
* * *
13929631 TGGGCCCTGGTGCGGGTGATTGCCTCGAACACCATCGACACACGTTGGTCGATCACCATCGGCCC
1 TGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACACGCTGGTCGATCACCATCGGCCC
** * ** * *
13929696 TGGTGCGGGTGGTTACCTCGATCACCATTGGCATACGC
66 TGGTGCGGGCAGTTACCTCGACCACCATCAGCAAACGA
* * *
13929734 TGGACCCTGCTGCGGGCGGTTGCCTCAAACACCATCGACACACGCTGG
1 TGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACACGCTGG
13929782 GCCCTGGTGC
Statistics
Matches: 129, Mismatches: 21, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
102 2 0.02
103 67 0.52
104 60 0.47
ACGTcount: A:0.18, C:0.33, G:0.29, T:0.20
Consensus pattern (103 bp):
TGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACACGCTGGTCGATCACCATCGGCCC
TGGTGCGGGCAGTTACCTCGACCACCATCAGCAAACGA
Found at i:13929767 original size:45 final size:45
Alignment explanation
Indices: 13929691--13930167 Score: 355
Period size: 45 Copynumber: 10.4 Consensus size: 45
13929681 GATCACCATC
* * * *
13929691 GGCCCTGGTGCGGGTGGTTACCTCGATCACCATTGGCATACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATTGGCACACGCTG
* * * * * *
13929736 GACCCTGCTGCGGGCGGTTGCCTCAAACACCATCGACACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATTGGCACACGCTG
* *
13929781 GGCCCTGGTGCGGGCCGTTGCCTCGACCACCATTGGCACATGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATTGGCACACGCTG
* * * * *
13929826 GGCCCTGGTACGGGCCGTTGCTTCGACCACCATCGGTACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATTGGCACACGCTG
* * * * * *
13929871 GGCCCTAGTACGGGCGGTTGCCTCAATCACCATTGGCACATGCTA
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATTGGCACACGCTG
** * * * * *
13929916 GAACCTGGTGTGAACGGTGCAGACGATTGCCTCGAGCACTATCGGCATACGTTG
1 GGCCCT-G-GTG--CGG-GC-G--G-TTGCCTCGACCACCATTGGCACACGCTG
* ** * * ** * *
13929970 GGCCCTGGTACAAGCGATTGCGTCGATTACCATCGGCACAAGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATTGGCACACGCTG
* * * * ***
13930015 GGCCCTAGTGCGGGCAGTTGGCTCGAACACCATCAACACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATTGGCACACGCTG
* * *
13930060 GGCCCTGGTGTGGGCGGTTGCCTCGAGCACCATCGGCACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATTGGCACACGCTG
* * * *
13930105 GGCCCTGGTGCTGACGGTTGCCTCGATCACCATCGATGCACA--CTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATTG--GCACACGCTG
*
13930150 GGCCCTGGTACGGGCGGT
1 GGCCCTGGTGCGGGCGGT
13930168 ACGGGCAGGT
Statistics
Matches: 338, Mismatches: 83, Indels: 22
0.76 0.19 0.05
Matches are distributed among these distances:
45 293 0.87
47 7 0.02
48 1 0.00
49 5 0.01
50 3 0.01
51 1 0.00
52 2 0.01
53 2 0.01
54 24 0.07
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (45 bp):
GGCCCTGGTGCGGGCGGTTGCCTCGACCACCATTGGCACACGCTG
Found at i:13929846 original size:90 final size:90
Alignment explanation
Indices: 13929691--13930167 Score: 423
Period size: 90 Copynumber: 5.2 Consensus size: 90
13929681 GATCACCATC
* * * * * * *
13929691 GGCCCTGGTGCGGGTGGTTACCTCGATCACCATTGGCATACGCTGGACCCTGCTGCGGGCGGTTG
1 GGCCCTGGTACGGGCGGTTGCCTCGATCACCATTGGCACACGCTGGGCCCTGGTGCGGGCCGTTG
*
13929756 CCTCAAACACCATCGACACACGCTG
66 CCTCGAACACCATCGACACACGCTG
* * * * *
13929781 GGCCCTGGTGCGGGCCGTTGCCTCGACCACCATTGGCACATGCTGGGCCCTGGTACGGGCCGTTG
1 GGCCCTGGTACGGGCGGTTGCCTCGATCACCATTGGCACACGCTGGGCCCTGGTGCGGGCCGTTG
* * **
13929846 CTTCGACCACCATCGGTACACGCTG
66 CCTCGAACACCATCGACACACGCTG
* * * * **
13929871 GGCCCTAGTACGGGCGGTTGCCTCAATCACCATTGGCACATGCTAGAACCTGGTGTGAACGGTGC
1 GGCCCTGGTACGGGCGGTTGCCTCGATCACCATTGGCACACGCTGGGCCCT-G-GTG--CGG-GC
* * * * *
13929936 AGACGATTGCCTCGAGCACTATCGGCATACGTTG
61 ---CG-TTGCCTCGAACACCATCGACACACGCTG
** * * * * * * *
13929970 GGCCCTGGTACAAGCGATTGCGTCGATTACCATCGGCACAAGCTGGGCCCTAGTGCGGGCAGTTG
1 GGCCCTGGTACGGGCGGTTGCCTCGATCACCATTGGCACACGCTGGGCCCTGGTGCGGGCCGTTG
* *
13930035 GCTCGAACACCATCAACACACGCTG
66 CCTCGAACACCATCGACACACGCTG
** * * * * *
13930060 GGCCCTGGTGTGGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTGGTGCTGACGGTTG
1 GGCCCTGGTACGGGCGGTTGCCTCGATCACCATTGGCACACGCTGGGCCCTGGTGCGGGCCGTTG
* ** *
13930125 CCTCGATCACCATCGATGCACACTG
66 CCTCGAACACCATCGACACACGCTG
13930150 GGCCCTGGTACGGGCGGT
1 GGCCCTGGTACGGGCGGT
13930168 ACGGGCAGGT
Statistics
Matches: 306, Mismatches: 72, Indels: 18
0.77 0.18 0.05
Matches are distributed among these distances:
90 226 0.74
91 2 0.01
92 2 0.01
94 5 0.02
95 5 0.02
97 3 0.01
98 2 0.01
99 61 0.20
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (90 bp):
GGCCCTGGTACGGGCGGTTGCCTCGATCACCATTGGCACACGCTGGGCCCTGGTGCGGGCCGTTG
CCTCGAACACCATCGACACACGCTG
Found at i:13930341 original size:45 final size:45
Alignment explanation
Indices: 13930207--13930343 Score: 170
Period size: 45 Copynumber: 3.0 Consensus size: 45
13930197 CACACTGGTC
* * *
13930207 GATCACCATCGGCACACGTTGGG-CCTCGGTATGGGCGGTTGCCTC
1 GATCACCATCGGCACACGCTGGGCCCT-GGTATGGGCGGTTACCTT
* * * *
13930252 AAACACCATCGGCACATGCTGGGCCCTGGTGCT-GGCGGTTACCTT
1 GATCACCATCGGCACACGCTGGGCCCTGGT-ATGGGCGGTTACCTT
*
13930297 GATCACCATCGGCACACGCTGGGCCCTGGTATGGGTGGTTACCTT
1 GATCACCATCGGCACACGCTGGGCCCTGGTATGGGCGGTTACCTT
13930342 GA
1 GA
13930344 GCCCTAGTGC
Statistics
Matches: 77, Mismatches: 12, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
44 1 0.01
45 72 0.94
46 4 0.05
ACGTcount: A:0.16, C:0.30, G:0.31, T:0.23
Consensus pattern (45 bp):
GATCACCATCGGCACACGCTGGGCCCTGGTATGGGCGGTTACCTT
Found at i:13930390 original size:115 final size:115
Alignment explanation
Indices: 13930244--13930451 Score: 308
Period size: 115 Copynumber: 1.8 Consensus size: 115
13930234 GGTATGGGCG
* * * * * * *
13930244 GTTGCCTCAAACACCATCGGCACATGCTGGGCCCTGGTGCTGGCGGTTACCTTGATCACCATCGG
1 GTTGCCTCAAACACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTCACCTCGAACACCATCAG
*
13930309 CACACGCTGGGCCCTGGTATGGGTGGTTACCTTGAGCCCTAGTGCTGGAA
66 CACACGCTGGGCCATGGTATGGGTGGTTACCTTGAGCCCTAGTGCTGGAA
* * *
13930359 GTTGCCTCGAGCACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTCGCCTCGAACACCATCAG
1 GTTGCCTCAAACACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTCACCTCGAACACCATCAG
*
13930424 CACACGCTGGGCCATGGTGTGGGTGGTT
66 CACACGCTGGGCCATGGTATGGGTGGTT
13930452 GCCTCGACCA
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
115 81 1.00
ACGTcount: A:0.16, C:0.31, G:0.32, T:0.21
Consensus pattern (115 bp):
GTTGCCTCAAACACCATCGGCACACGCTGGGCCCTAGTGCGGGCGGTCACCTCGAACACCATCAG
CACACGCTGGGCCATGGTATGGGTGGTTACCTTGAGCCCTAGTGCTGGAA
Found at i:13930411 original size:45 final size:45
Alignment explanation
Indices: 13930344--13930792 Score: 249
Period size: 45 Copynumber: 10.0 Consensus size: 45
13930334 GTTACCTTGA
* ** *
13930344 GCCCTAGTGCTGGAAGTTGCCTCGAGCACCATCGGCACACGCTGG
1 GCCCTAGTGCAGGCGGTTGCCTCGAACACCATCGGCACACGCTGG
* * *
13930389 GCCCTAGTGCGGGCGGTCGCCTCGAACACCATCAGCACACGCTGG
1 GCCCTAGTGCAGGCGGTTGCCTCGAACACCATCGGCACACGCTGG
* * ** * * * * * *
13930434 GCCATGGTGTGGGTGGTTGCCTCGACCACCATTGGCAGAAGATGG
1 GCCCTAGTGCAGGCGGTTGCCTCGAACACCATCGGCACACGCTGG
* * * * *
13930479 CCCCTGGTGCAGGCGGTTGCAC-CGAACACCATCGGTACATGTTGG
1 GCCCTAGTGCAGGCGGTTGC-CTCGAACACCATCGGCACACGCTGG
* * * * *
13930524 GCCCTAGTGCAGGCGATTGCCTCGAGCACCATCGGCATAAGC-CG
1 GCCCTAGTGCAGGCGGTTGCCTCGAACACCATCGGCACACGCTGG
* * ** * * * * * * *
13930568 ACCCTTGGTGCAGGCTCTTACCTCGACCACCATCGGTAGAAGATAG
1 GCCC-TAGTGCAGGCGGTTGCCTCGAACACCATCGGCACACGCTGG
* * * *
13930614 CCCCTAGTGCGGGCAGTTGCCTCGAACACCATCGGCACACGTTGG
1 GCCCTAGTGCAGGCGGTTGCCTCGAACACCATCGGCACACGCTGG
** * * ** * * ** * * *
13930659 GCTATGGTACAGGCGGTTGGTTTGAGCACCATCAACAAAAGATGG
1 GCCCTAGTGCAGGCGGTTGCCTCGAACACCATCGGCACACGCTGG
* * * * * *
13930704 CCCCTGGTACGGGCGGTTGCCTCGAACACCATCAGCACATGCTGG
1 GCCCTAGTGCAGGCGGTTGCCTCGAACACCATCGGCACACGCTGG
* * * *
13930749 GCCCTGGTGC-GAGCAGTTGCCTC-AACCACCATCGCCACAAGCTG
1 GCCCTAGTGCAG-GCGGTTGCCTCGAA-CACCATCGGCACACGCTG
13930793 ACGCTTGGTG
Statistics
Matches: 305, Mismatches: 93, Indels: 12
0.74 0.23 0.03
Matches are distributed among these distances:
44 8 0.03
45 292 0.96
46 5 0.02
ACGTcount: A:0.20, C:0.32, G:0.30, T:0.18
Consensus pattern (45 bp):
GCCCTAGTGCAGGCGGTTGCCTCGAACACCATCGGCACACGCTGG
Found at i:13930727 original size:135 final size:135
Alignment explanation
Indices: 13930448--13930736 Score: 301
Period size: 135 Copynumber: 2.1 Consensus size: 135
13930438 TGGTGTGGGT
* * * *
13930448 GGTTGCCTCGACCACCATTGGCAGAAGATGGCCCCTGGTGCAGGCGGTTGCACCGAACACCATCG
1 GGTTGCCTCGACCACCATCGGCAGAAGATAGCCCCTAGTGCAGGCAGTTGCACCGAACACCATCG
* * * * ** * * * *
13930513 GTACATGTTGGGCCCTAGTGCAGGCGATTGCCTCGAGCACCATCGGCATAAGCCGACCCTTGGTG
66 GCACACGTTGGGCCATAGTACAGGCGATTGCCTCGAGCACCATCAACAAAAGACGACCCCTGGTA
13930578 CAGGC
131 CAGGC
** * * *
13930583 TCTTACCTCGACCACCATCGGTAGAAGATAGCCCCTAGTGCGGGCAGTTGC-CTCGAACACCATC
1 GGTTGCCTCGACCACCATCGGCAGAAGATAGCCCCTAGTGCAGGCAGTTGCAC-CGAACACCATC
* * * ** * * *
13930647 GGCACACGTTGGGCTATGGTACAGGCGGTTGGTTTGAGCACCATCAACAAAAGATGGCCCCTGGT
65 GGCACACGTTGGGCCATAGTACAGGCGATTGCCTCGAGCACCATCAACAAAAGACGACCCCTGGT
*
13930712 ACGGGC
130 ACAGGC
*
13930718 GGTTGCCTCGAACACCATC
1 GGTTGCCTCGACCACCATC
13930737 AGCACATGCT
Statistics
Matches: 121, Mismatches: 32, Indels: 2
0.78 0.21 0.01
Matches are distributed among these distances:
134 1 0.01
135 120 0.99
ACGTcount: A:0.21, C:0.30, G:0.29, T:0.19
Consensus pattern (135 bp):
GGTTGCCTCGACCACCATCGGCAGAAGATAGCCCCTAGTGCAGGCAGTTGCACCGAACACCATCG
GCACACGTTGGGCCATAGTACAGGCGATTGCCTCGAGCACCATCAACAAAAGACGACCCCTGGTA
CAGGC
Found at i:13939502 original size:26 final size:26
Alignment explanation
Indices: 13939473--13939525 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
13939463 CCTGTCTAAT
13939473 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
*
13939499 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
13939525 C
1 C
13939526 CTAATTCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:13939856 original size:26 final size:26
Alignment explanation
Indices: 13939818--13939870 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13939808 CCGGTTCGAT
*
13939818 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13939844 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13939870 C
1 C
13939871 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13939956 original size:345 final size:345
Alignment explanation
Indices: 13939416--13940064 Score: 835
Period size: 345 Copynumber: 1.9 Consensus size: 345
13939406 ATGTGTAAGT
* *
13939416 CGAGGATCGGCCCGATCCCCCTCTGCGTGCAGCTGTCGATCCGGCTGCCTGTCTAATCTTAGACT
1 CGAGGATCGGCCCGATCCCCCTCTGCGTGCAGCTGTCGATCCGGCTACCGGTCTAATCTTAGACT
* * * *
13939481 GGAAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAATTCAATCCATGAAACG
66 GGAAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* ** * * * ** ** *
13939546 AGTCTGCGGGTGCTCCGCTGGCCGGAGAGGCATAATATGTAAGCCGAGGATTTGCTTGGTCCCCC
131 AGACTGCGGGCACTCAGCTGACCGGAGAGGCATAATACGTAAGCCGAGGATCAGCCCGATCCCCC
* * ** * *
13939611 T-TTACGTGCTACCGATCCCGCTGTCGGTCCAGCTACCACAACCTTCAGTCTGGTTGGGG-TTGA
196 TCTT-CGTGCTACCGATCCCCCTGCCAATCCAGCTACCACAACCCTCAGTCTGCTTGGGGCTT-A
13939674 GACATGGAATGAACTCCCTATGCCAAAGCCAACCCATAAAACGAGCGTGCCGATGCTCAACCGAT
259 GACATGGAATGAACTCCCTATGCCAAAGCCAACCCATAAAACGAGCGTGCCGATGCTCAACCGAT
13939739 CAGAGAGGCAGGATGCGCAAGC
324 CAGAGAGGCAGGATGCGCAAGC
* * * * *
13939761 CGAGGATCGGCCCGGTCCCCCTTTGCGTGCTGCTGTTGATCTC-GCTACCGGT-TCGATCTTAGA
1 CGAGGATCGGCCCGATCCCCCTCTGCGTGCAGCTGTCGATC-CGGCTACCGGTCT-AATCTTAGA
13939824 CTAGG-AATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
64 CT-GGAAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
13939888 ACGA-ACGTGCGGGCACTGAG-TCGACCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGAT
128 ACGAGAC-TGCGGGCACTCAGCT-GACCGGAGAGGCATAATACGTAAGCCGAGGATCAGCCCGAT
* * * *
13939951 CCCCCTCTTCGTGCTATCGATCCCCCTGCCAATGCAGCTGCCACAACCCTCAGTTTGCTTGGGGC
191 CCCCCTCTTCGTGCTACCGATCCCCCTGCCAATCCAGCTACCACAACCCTCAGTCTGCTTGGGGC
* * * *
13940016 TTAGACATGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGC
256 TTAGACATGGAATGAACTCCCTATGCCAAAGCCAACCCATAAAACGAGC
13940065 AGGCGAGCAG
Statistics
Matches: 258, Mismatches: 39, Indels: 14
0.83 0.13 0.05
Matches are distributed among these distances:
344 3 0.01
345 248 0.96
346 7 0.03
ACGTcount: A:0.23, C:0.29, G:0.26, T:0.22
Consensus pattern (345 bp):
CGAGGATCGGCCCGATCCCCCTCTGCGTGCAGCTGTCGATCCGGCTACCGGTCTAATCTTAGACT
GGAAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGACTGCGGGCACTCAGCTGACCGGAGAGGCATAATACGTAAGCCGAGGATCAGCCCGATCCCCC
TCTTCGTGCTACCGATCCCCCTGCCAATCCAGCTACCACAACCCTCAGTCTGCTTGGGGCTTAGA
CATGGAATGAACTCCCTATGCCAAAGCCAACCCATAAAACGAGCGTGCCGATGCTCAACCGATCA
GAGAGGCAGGATGCGCAAGC
Found at i:13940850 original size:45 final size:45
Alignment explanation
Indices: 13940801--13940990 Score: 143
Period size: 45 Copynumber: 4.2 Consensus size: 45
13940791 AGGCTACCCT
* *
13940801 TTGGTACGGGCACTTACCTCGACCGCCATCGACACAAGCTGGGCC
1 TTGGTACGGGCAGTTACCTCGACCACCATCGACACAAGCTGGGCC
* * * * **** * *
13940846 TTGGTGA-GGGCGGTTGCCTCGATCACCGTCGACATGTTCTAGCCC
1 TTGGT-ACGGGCAGTTACCTCGACCACCATCGACACAAGCTGGGCC
*** * * *
13940891 TTGGTGTAGGCGGTTACCTCGACCACCATCGACAGAAGATGGGCC
1 TTGGTACGGGCAGTTACCTCGACCACCATCGACACAAGCTGGGCC
* * *
13940936 TTGGTGCGGG-AGGTTACCTCGATCACCATCGACACACGCTGGG-C
1 TTGGTACGGGCA-GTTACCTCGACCACCATCGACACAAGCTGGGCC
13940980 TCTGGTACGGG
1 T-TGGTACGGG
13940991 TGGTTGCCTC
Statistics
Matches: 109, Mismatches: 32, Indels: 8
0.73 0.21 0.05
Matches are distributed among these distances:
44 2 0.02
45 106 0.97
46 1 0.01
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (45 bp):
TTGGTACGGGCAGTTACCTCGACCACCATCGACACAAGCTGGGCC
Found at i:13941002 original size:90 final size:90
Alignment explanation
Indices: 13940782--13940975 Score: 210
Period size: 90 Copynumber: 2.2 Consensus size: 90
13940772 CATCGACCAT
* * * ** * *
13940782 CATCGGCACAGGCTA-CCCTTTGGTACGGGCACTTACCTCGACCGCCATCGACACAAGCTGGGCC
1 CATCGACACACGCTAGCCC-TTGGTACAGGCGGTTACCTCGACCACCATCGACACAAGATGGGCC
* *
13940846 TTGGTGAGGGCGGTTGCCTCGATCAC
65 TTGGTGAGGGAGGTTACCTCGATCAC
* **** ** *
13940872 CGTCGACATGTTCTAGCCCTTGGTGTAGGCGGTTACCTCGACCACCATCGACAGAAGATGGGCCT
1 CATCGACACACGCTAGCCCTTGGTACAGGCGGTTACCTCGACCACCATCGACACAAGATGGGCCT
*
13940937 TGGTGCGGGAGGTTACCTCGATCAC
66 TGGTGAGGGAGGTTACCTCGATCAC
13940962 CATCGACACACGCT
1 CATCGACACACGCT
13940976 GGGCTCTGGT
Statistics
Matches: 81, Mismatches: 22, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
90 78 0.96
91 3 0.04
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.21
Consensus pattern (90 bp):
CATCGACACACGCTAGCCCTTGGTACAGGCGGTTACCTCGACCACCATCGACACAAGATGGGCCT
TGGTGAGGGAGGTTACCTCGATCAC
Found at i:13941100 original size:45 final size:44
Alignment explanation
Indices: 13941036--13941265 Score: 253
Period size: 45 Copynumber: 5.1 Consensus size: 44
13941026 ATCACCATTA
** *
13941036 GCCCTGGTGTGGGTGGTTGCCTTCAACACCATCGACACACGCTGG
1 GCCCTGGTGTGGGCAGTTGCC-TCAACACCATCGGCACACGCTGG
* *
13941081 GCCCTGGTATGGGCGGTTGCCTCAATCACCATCGGCACACGCTGG
1 GCCCTGGTGTGGGCAGTTGCCTCAA-CACCATCGGCACACGCTGG
** * *
13941126 GCCCTGGTGCAGGCAGTTACCTCGAACACCATCGACACACGCTGG
1 GCCCTGGTGTGGGCAGTTGCCTC-AACACCATCGGCACACGCTGG
* * * *
13941171 GCCCTGGTATGAGAAGTTGCCTCAAGCACCATCGGCACACACTGG
1 GCCCTGGTGTGGGCAGTTGCCTCAA-CACCATCGGCACACGCTGG
* * * * *
13941216 GCGCTGGTGCGGGCAGTTGCCTCGATCACCATCGGTACACACTGG
1 GCCCTGGTGTGGGCAGTTGCCTC-AACACCATCGGCACACGCTGG
13941261 GCCCT
1 GCCCT
13941266 AGTGCGAGCG
Statistics
Matches: 156, Mismatches: 25, Indels: 8
0.83 0.13 0.04
Matches are distributed among these distances:
44 6 0.04
45 147 0.94
46 3 0.02
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (44 bp):
GCCCTGGTGTGGGCAGTTGCCTCAACACCATCGGCACACGCTGG
Found at i:13941190 original size:90 final size:90
Alignment explanation
Indices: 13941060--13941265 Score: 304
Period size: 90 Copynumber: 2.3 Consensus size: 90
13941050 GGTTGCCTTC
* ** * *
13941060 AACACCATCGACACACGCTGGGCCCTGGTATGGGCGGTTGCCTCAATCACCATCGGCACACGCTG
1 AACACCATCGACACACGCTGGGCCCTGGTATGAGAAGTTGCCTCAAGCACCATCGGCACACACTG
13941125 GGCCCTGGTGCAGGCAGTTACCTCG
66 GGCCCTGGTGCAGGCAGTTACCTCG
13941150 AACACCATCGACACACGCTGGGCCCTGGTATGAGAAGTTGCCTCAAGCACCATCGGCACACACTG
1 AACACCATCGACACACGCTGGGCCCTGGTATGAGAAGTTGCCTCAAGCACCATCGGCACACACTG
* * *
13941215 GGCGCTGGTGCGGGCAGTTGCCTCG
66 GGCCCTGGTGCAGGCAGTTACCTCG
* ** *
13941240 ATCACCATCGGTACACACTGGGCCCT
1 AACACCATCGACACACGCTGGGCCCT
13941266 AGTGCGAGCG
Statistics
Matches: 104, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
90 104 1.00
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.17
Consensus pattern (90 bp):
AACACCATCGACACACGCTGGGCCCTGGTATGAGAAGTTGCCTCAAGCACCATCGGCACACACTG
GGCCCTGGTGCAGGCAGTTACCTCG
Found at i:13941271 original size:45 final size:45
Alignment explanation
Indices: 13941036--13941294 Score: 250
Period size: 45 Copynumber: 5.8 Consensus size: 45
13941026 ATCACCATTA
* ** * *
13941036 GCCCTGGTGTGGGTGGTTGCCTTC-AACACCATCGACACACGCTGG
1 GCCCTGGTGCGGGCAGTTGCC-TCGAGCACCATCGGCACACGCTGG
** * * *
13941081 GCCCTGGTATGGGCGGTTGCCTCAATCACCATCGGCACACGCTGG
1 GCCCTGGTGCGGGCAGTTGCCTCGAGCACCATCGGCACACGCTGG
* * * *
13941126 GCCCTGGTGCAGGCAGTTACCTCGAACACCATCGACACACGCTGG
1 GCCCTGGTGCGGGCAGTTGCCTCGAGCACCATCGGCACACGCTGG
** * * * *
13941171 GCCCTGGTATGAGAAGTTGCCTCAAGCACCATCGGCACACACTGG
1 GCCCTGGTGCGGGCAGTTGCCTCGAGCACCATCGGCACACGCTGG
* * * *
13941216 GCGCTGGTGCGGGCAGTTGCCTCGATCACCATCGGTACACACTGG
1 GCCCTGGTGCGGGCAGTTGCCTCGAGCACCATCGGCACACGCTGG
* * * *
13941261 GCCCTAGTGCGAGCGGTTGCATCGAGCACCATCG
1 GCCCTGGTGCGGGCAGTTGCCTCGAGCACCATCG
13941295 ATGCACGCTG
Statistics
Matches: 177, Mismatches: 36, Indels: 2
0.82 0.17 0.01
Matches are distributed among these distances:
44 2 0.01
45 175 0.99
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (45 bp):
GCCCTGGTGCGGGCAGTTGCCTCGAGCACCATCGGCACACGCTGG
Done.