Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 69 of 195
Found at i:13941280 original size:90 final size:90
Alignment explanation
Indices: 13941060--13941294 Score: 290
Period size: 90 Copynumber: 2.6 Consensus size: 90
13941050 GGTTGCCTTC
* * * * * *
13941060 AACACCATCGACACACGCTGGGCCCTGGTATGGGCGGTTGCCTCAATCACCATCGGCACACGCTG
1 AACACCATCGACACACACTGGGCCCTAGTACGAGCGGTTGCCTCAAGCACCATCGGCACACACTG
13941125 GGCCCTGGTGCAGGCAGTTACCTCG
66 GGCCCTGGTGCAGGCAGTTACCTCG
* * * **
13941150 AACACCATCGACACACGCTGGGCCCTGGTATGAGAAGTTGCCTCAAGCACCATCGGCACACACTG
1 AACACCATCGACACACACTGGGCCCTAGTACGAGCGGTTGCCTCAAGCACCATCGGCACACACTG
* * *
13941215 GGCGCTGGTGCGGGCAGTTGCCTCG
66 GGCCCTGGTGCAGGCAGTTACCTCG
* ** * * *
13941240 ATCACCATCGGTACACACTGGGCCCTAGTGCGAGCGGTTGCATCGAGCACCATCG
1 AACACCATCGACACACACTGGGCCCTAGTACGAGCGGTTGCCTCAAGCACCATCG
13941295 ATGCACGCTG
Statistics
Matches: 126, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
90 126 1.00
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.17
Consensus pattern (90 bp):
AACACCATCGACACACACTGGGCCCTAGTACGAGCGGTTGCCTCAAGCACCATCGGCACACACTG
GGCCCTGGTGCAGGCAGTTACCTCG
Found at i:13941291 original size:135 final size:135
Alignment explanation
Indices: 13941051--13941304 Score: 332
Period size: 135 Copynumber: 1.9 Consensus size: 135
13941041 GGTGTGGGTG
* * *
13941051 GTTGCCTTCAACACCATCGACACACGCTGGGCCCTGGTATGGGCGGTTGCCTCAATCACCATCGG
1 GTTGCCTTCAACACCATCGACACACACTGGGCCCTGGTACGGGCAGTTGCCTCAATCACCATCGG
* * *
13941116 CACACGCTGGGCCCTGGTGCAGGCAGTTACCTCGAACACCATCGACACACGCTGGGCCCTGGTAT
66 CACACACTGGGCCCTAGTGCAGGCAGTTACATCGAACACCATCGACACACGCTGGGCCCTGGTAT
13941181 GAGAA
131 GAGAA
* * * *
13941186 GTTGCC-TCAAGCACCATCGGCACACACTGGGCGCTGGTGCGGGCAGTTGCCTCGATCACCATCG
1 GTTGCCTTCAA-CACCATCGACACACACTGGGCCCTGGTACGGGCAGTTGCCTCAATCACCATCG
* * * * **
13941250 GTACACACTGGGCCCTAGTGC-GAGCGGTTGCATCGAGCACCATCGATGCACGCTG
65 GCACACACTGGGCCCTAGTGCAG-GCAGTTACATCGAACACCATCGACACACGCTG
13941305 ATTGATCACC
Statistics
Matches: 101, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
134 5 0.05
135 96 0.95
ACGTcount: A:0.20, C:0.33, G:0.29, T:0.19
Consensus pattern (135 bp):
GTTGCCTTCAACACCATCGACACACACTGGGCCCTGGTACGGGCAGTTGCCTCAATCACCATCGG
CACACACTGGGCCCTAGTGCAGGCAGTTACATCGAACACCATCGACACACGCTGGGCCCTGGTAT
GAGAA
Found at i:13941378 original size:45 final size:45
Alignment explanation
Indices: 13941309--13941408 Score: 130
Period size: 45 Copynumber: 2.2 Consensus size: 45
13941299 ACGCTGATTG
* * * * *
13941309 ATCACCATCGGTACATGCTGGGCCCTGGTGCGGGC-AGTTGCCTCA
1 ATCACCATCGGCACAGGCTAGGCCCTGGAGCGGGCGA-TTACCTCA
13941354 ATCACCATCGGCACAGGCTAGGCCCTGGAGCGGGCGATTACCTCA
1 ATCACCATCGGCACAGGCTAGGCCCTGGAGCGGGCGATTACCTCA
*
13941399 ACCACCATCG
1 ATCACCATCG
13941409 CCATAAGCCG
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
45 47 0.98
46 1 0.02
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.18
Consensus pattern (45 bp):
ATCACCATCGGCACAGGCTAGGCCCTGGAGCGGGCGATTACCTCA
Found at i:13941405 original size:114 final size:114
Alignment explanation
Indices: 13941197--13941408 Score: 271
Period size: 114 Copynumber: 1.9 Consensus size: 114
13941187 TTGCCTCAAG
* * * *
13941197 CACCATCGGCACACACTGGGCGCTGGTGCGGGCAGTTGCCTCGATCACCATCGGTACACACTGGG
1 CACCATCGGCACACACTGGGCCCTGGTGCGGGCAGTTGCCTCAATCACCATCGGCACACACTAGG
* * * * *
13941262 CCCTAGTGCGAGCGGTTGCATCGAGCACCATCGATGCACGCTGATTGAT
66 CCCTAGAGCGAGCGATTACATCAACCACCATCGATGCACGCTGATTGAT
* ** **
13941311 CACCATCGGTACATGCTGGGCCCTGGTGCGGGCAGTTGCCTCAATCACCATCGGCACAGGCTAGG
1 CACCATCGGCACACACTGGGCCCTGGTGCGGGCAGTTGCCTCAATCACCATCGGCACACACTAGG
* * *
13941376 CCCTGGAGCGGGCGATTACCTCAACCACCATCG
66 CCCTAGAGCGAGCGATTACATCAACCACCATCG
13941409 CCATAAGCCG
Statistics
Matches: 81, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
114 81 1.00
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.18
Consensus pattern (114 bp):
CACCATCGGCACACACTGGGCCCTGGTGCGGGCAGTTGCCTCAATCACCATCGGCACACACTAGG
CCCTAGAGCGAGCGATTACATCAACCACCATCGATGCACGCTGATTGAT
Found at i:13941542 original size:45 final size:45
Alignment explanation
Indices: 13941491--13941599 Score: 137
Period size: 45 Copynumber: 2.4 Consensus size: 45
13941481 TTACGACGAA
* * *
13941491 CACCATCGGCATACGCTGGGCCCTGGTACGGGTGGTTGCCTCGGT
1 CACCATCGGCACACGCTGGGCCCTGGCACGGGCGGTTGCCTCGGT
* * *
13941536 CACCATCGGCACACGGTGGGCCCTGGCACGGGCGGTTGCCTTGAT
1 CACCATCGGCACACGCTGGGCCCTGGCACGGGCGGTTGCCTCGGT
* * *
13941581 CACTATCGACACATGCTGG
1 CACCATCGGCACACGCTGG
13941600 TCGATCACCA
Statistics
Matches: 54, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.15, C:0.32, G:0.33, T:0.20
Consensus pattern (45 bp):
CACCATCGGCACACGCTGGGCCCTGGCACGGGCGGTTGCCTCGGT
Found at i:13941609 original size:249 final size:249
Alignment explanation
Indices: 13941354--13941828 Score: 598
Period size: 249 Copynumber: 1.9 Consensus size: 249
13941344 AGTTGCCTCA
* * * * *
13941354 ATCACCATCGGCACA-GGCTAGGCCCTGGAGCGGGCGATTACCTCAACCACCATCGCCATAAGCC
1 ATCACCATCGGCACACGG-TAGGCCCTGGAGCAGGCGACTACCTCAAACACCATCGACACAAGCC
* * * * * *
13941418 GACCCTTGGTACGGGCTCTTACCTTGACCACCTTCGGTAGAAGAT-GGCCTCTGGT-CTGGGCGG
65 GACCCTTGGTACGGGCGCTTACCTGGACCACCATCGGCACAAGATGGGCC-CTGGTGC-AGGCGG
* * * *
13941481 TTACGACGAACACCATCGGCATACGCTGGGCCCTGGTACGGGTGGTTGCCTCG-GTCACCATCGG
128 TTACCACGAACACCATCAGCAAACGCTGGGCCCTGGTACGAGTGGTTGCCTCGAG-CACCATCGG
*
13941545 CACACGGTGGGCCCTGGCACGGGCGGTTGCCTTGATCACTATCGACACATGCTGGTCG
192 CACACGGTGGGCCCTGGCACGAGCGGTTGCCTTGATCACTATCGACACATGCTGGTCG
* * * *
13941603 ATCACCATTGGCACACGGTGGGCCCTGGTGCAGGCGGCTACCTCAAACACCATCGACACAAGCCG
1 ATCACCATCGGCACACGGTAGGCCCTGGAGCAGGCGACTACCTCAAACACCATCGACACAAGCCG
* * * * * *
13941668 ACCCTTGGTACGGGCGGTTGCCTGGAGCACCATCGGCACATGCTGGGCCCTGGTGCAGGTGGTTA
66 ACCCTTGGTACGGGCGCTTACCTGGACCACCATCGGCACAAGATGGGCCCTGGTGCAGGCGGTTA
* *
13941733 CCTCGAACACCATCAGCAAACGTTGGGCCCTGGTACGAGTGGTTGCCTCGAGCACCATCGGCACA
131 CCACGAACACCATCAGCAAACGCTGGGCCCTGGTACGAGTGGTTGCCTCGAGCACCATCGGCACA
* * * *
13941798 CGTTGGGCCTTGGTACGAGCGGTTGCTTTGA
196 CGGTGGGCCCTGGCACGAGCGGTTGCCTTGA
13941829 GCACCATTGA
Statistics
Matches: 190, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
249 182 0.96
250 8 0.04
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (249 bp):
ATCACCATCGGCACACGGTAGGCCCTGGAGCAGGCGACTACCTCAAACACCATCGACACAAGCCG
ACCCTTGGTACGGGCGCTTACCTGGACCACCATCGGCACAAGATGGGCCCTGGTGCAGGCGGTTA
CCACGAACACCATCAGCAAACGCTGGGCCCTGGTACGAGTGGTTGCCTCGAGCACCATCGGCACA
CGGTGGGCCCTGGCACGAGCGGTTGCCTTGATCACTATCGACACATGCTGGTCG
Found at i:13941744 original size:45 final size:45
Alignment explanation
Indices: 13941600--13941821 Score: 171
Period size: 45 Copynumber: 4.9 Consensus size: 45
13941590 CACATGCTGG
* * * * *
13941600 TCGATCACCATTGGCACACGGTGGGCCCTGGTGCAGGCGGCTACC
1 TCGAACACCATCGGCACACGCTGGGCCCTGGTACAGGCGGTTACC
* * * * * * *
13941645 TCAAACACCATCGACACAAGC-CGACCCTTGGTACGGGCGGTTGCC
1 TCGAACACCATCGGCACACGCTGGGCCC-TGGTACAGGCGGTTACC
* * * * *
13941690 TGGAGCACCATCGGCACATGCTGGGCCCTGGTGCAGGTGGTTACC
1 TCGAACACCATCGGCACACGCTGGGCCCTGGTACAGGCGGTTACC
* * * * *
13941735 TCGAACACCATCAGCAAACGTTGGGCCCTGGTAC-GAGTGGTTGCC
1 TCGAACACCATCGGCACACGCTGGGCCCTGGTACAG-GCGGTTACC
* * *
13941780 TCGAGCACCATCGGCACACGTTGGGCCTTGGTAC-GAGCGGTT
1 TCGAACACCATCGGCACACGCTGGGCCCTGGTACAG-GCGGTT
13941822 GCTTTGAGCA
Statistics
Matches: 138, Mismatches: 36, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
44 5 0.04
45 129 0.93
46 4 0.03
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (45 bp):
TCGAACACCATCGGCACACGCTGGGCCCTGGTACAGGCGGTTACC
Found at i:13941767 original size:90 final size:90
Alignment explanation
Indices: 13941600--13941811 Score: 241
Period size: 90 Copynumber: 2.4 Consensus size: 90
13941590 CACATGCTGG
* * *
13941600 TCGATCACCATTGGCACACGGTGGGCCCTGGTGCAGGCGGCTACCTCAAACACCATCGACACAAG
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGCTACCTCAAACACCATCGACACAAG
*
13941665 CCGACCCTTGGTACGGGCGGTTGCC
66 CCGACCCTTGGTACGAGCGGTTGCC
* * * * *
13941690 TGGAGCACCATCGGCACATGCTGGGCCCTGGTGCAGGTGGTTACCTCGAACACCATC-AGCA-AA
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGCTACCTCAAACACCATCGA-CACAA
** * *
13941753 CGTTGGGCCC-TGGTACGAGTGGTTGCC
65 -G-CCGACCCTTGGTACGAGCGGTTGCC
* *
13941780 TCGAGCACCATCGGCACACGTTGGGCCTTGGT
1 TCGAGCACCATCGGCACACGCTGGGCCCTGGT
13941812 ACGAGCGGTT
Statistics
Matches: 102, Mismatches: 17, Indels: 6
0.82 0.14 0.05
Matches are distributed among these distances:
89 3 0.03
90 95 0.93
91 4 0.04
ACGTcount: A:0.19, C:0.32, G:0.31, T:0.19
Consensus pattern (90 bp):
TCGAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGGCTACCTCAAACACCATCGACACAAG
CCGACCCTTGGTACGAGCGGTTGCC
Found at i:13941822 original size:45 final size:45
Alignment explanation
Indices: 13941673--13941835 Score: 184
Period size: 45 Copynumber: 3.6 Consensus size: 45
13941663 AGCCGACCCT
* * * *
13941673 TGGTACGGGCGGTTGCCTGGAGCACCATCGGCACATGCTGGGCCC
1 TGGTACGAGCGGTTGCCTCGAGCACCATCGGCACACGTTGGGCCC
* * * * * *
13941718 TGGTGC-AGGTGGTTACCTCGAACACCATCAGCAAACGTTGGGCCC
1 TGGTACGA-GCGGTTGCCTCGAGCACCATCGGCACACGTTGGGCCC
* *
13941763 TGGTACGAGTGGTTGCCTCGAGCACCATCGGCACACGTTGGGCCT
1 TGGTACGAGCGGTTGCCTCGAGCACCATCGGCACACGTTGGGCCC
* *
13941808 TGGTACGAGCGGTTGCTTTGAGCACCAT
1 TGGTACGAGCGGTTGCCTCGAGCACCAT
13941836 TGATATAAGC
Statistics
Matches: 97, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
45 96 0.99
46 1 0.01
ACGTcount: A:0.17, C:0.28, G:0.33, T:0.21
Consensus pattern (45 bp):
TGGTACGAGCGGTTGCCTCGAGCACCATCGGCACACGTTGGGCCC
Found at i:13944289 original size:45 final size:45
Alignment explanation
Indices: 13944240--13944460 Score: 183
Period size: 45 Copynumber: 4.9 Consensus size: 45
13944230 CAGCACACAT
* * *
13944240 TGGGCCCTGGTACGGGTGGTTGCCTCGATCACCATCGGCACAAGC
1 TGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGC
* *
13944285 TGGGCCCTGGTGTGGGCGGTTGCCTCGAACACCATCGGCACATGC
1 TGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGC
* * * * * *
13944330 TGGGCCCTAGTGCGAGCGG-TGCCTTGAGCACCATCGGCAGACGC
1 TGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGC
* * ** ** * * * *
13944374 TGGGCCCTAGTGTGGAAGGTTGCCAAGATCACCATCAGCACACGG
1 TGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGC
*** * * * *
13944419 TGGGTGTTGGTGCAGGCGATTGCCTTGAGCACCATCGGCACA
1 TGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA
13944461 CGCTAGTCGA
Statistics
Matches: 140, Mismatches: 35, Indels: 2
0.79 0.20 0.01
Matches are distributed among these distances:
44 36 0.26
45 104 0.74
ACGTcount: A:0.17, C:0.29, G:0.34, T:0.19
Consensus pattern (45 bp):
TGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGC
Found at i:13944365 original size:89 final size:90
Alignment explanation
Indices: 13944260--13944460 Score: 217
Period size: 89 Copynumber: 2.2 Consensus size: 90
13944250 TACGGGTGGT
* * * ** ** *
13944260 TGCCTCGATCACCATCGGCACAAGCTGGGCCCTGGTGTGGGCGGTTGCCTCGAACACCATCGGCA
1 TGCCTTGAGCACCATCGGCACAAGCTGGGCCCTAGTGTGGAAGGTTGCCAAGAACACCATCAGCA
*
13944325 CATGCTGGGCCCTAGTGC-GAGCG-G
66 CACGCTGGGCCCTAGTGCAG-GCGAG
* * *
13944349 TGCCTTGAGCACCATCGGCAGACGCTGGGCCCTAGTGTGGAAGGTTGCCAAGATCACCATCAGCA
1 TGCCTTGAGCACCATCGGCACAAGCTGGGCCCTAGTGTGGAAGGTTGCCAAGAACACCATCAGCA
* *** * *
13944414 CACGGTGGGTGTTGGTGCAGGCGAT
66 CACGCTGGGCCCTAGTGCAGGCGAG
13944439 TGCCTTGAGCACCATCGGCACA
1 TGCCTTGAGCACCATCGGCACA
13944461 CGCTAGTCGA
Statistics
Matches: 91, Mismatches: 19, Indels: 3
0.81 0.17 0.03
Matches are distributed among these distances:
89 69 0.76
90 22 0.24
ACGTcount: A:0.18, C:0.30, G:0.33, T:0.19
Consensus pattern (90 bp):
TGCCTTGAGCACCATCGGCACAAGCTGGGCCCTAGTGTGGAAGGTTGCCAAGAACACCATCAGCA
CACGCTGGGCCCTAGTGCAGGCGAG
Found at i:13944533 original size:45 final size:45
Alignment explanation
Indices: 13944467--13944815 Score: 294
Period size: 45 Copynumber: 7.8 Consensus size: 45
13944457 CACACGCTAG
** *
13944467 TCGATCACCATCGGCACACGTTGGGCCCCAGTGTGGGTGGTTGCC
1 TCGATCACCATCGGCACACGTTGGGCCCTGGTGTGGGCGGTTGCC
* * * * * *
13944512 TTGATCACCATCGGTACACGTTGGG-CCTCGATGCGGACGGTTACC
1 TCGATCACCATCGGCACACGTTGGGCCCT-GGTGTGGGCGGTTGCC
* * *
13944557 TCGAACACCATCGGTACACGCTGGGCCCTGGTGCT-GGCGGTTGCC
1 TCGATCACCATCGGCACACGTTGGGCCCTGGTG-TGGGCGGTTGCC
*
13944602 TCGATCACCATCGACACACGCTT-GGCCCTGGTGTGGGCGGTTGCC
1 TCGATCACCATCGGCACACG-TTGGGCCCTGGTGTGGGCGGTTGCC
* * * * *
13944647 TCCAACACCATCGAG-AAACGCTGGGCCCTGGTGCGGGCGGTTGCC
1 TCGATCACCATCG-GCACACGTTGGGCCCTGGTGTGGGCGGTTGCC
* * ** * *
13944692 TCGATCACCATCGACACACGCTCTGCCCTGGTGTGGGTGGTTGCA
1 TCGATCACCATCGGCACACGTTGGGCCCTGGTGTGGGCGGTTGCC
* * * * * * ** * *
13944737 TCGAGCGCCATTGGCACACGGTGCG-CCTAGTACGAGCGGTCGCC
1 TCGATCACCATCGGCACACGTTGGGCCCTGGTGTGGGCGGTTGCC
* * *
13944781 TCGATCACCATCGACACATGCTGGGCCCTGGTGTG
1 TCGATCACCATCGGCACACGTTGGGCCCTGGTGTG
13944816 AGCTATACGG
Statistics
Matches: 236, Mismatches: 59, Indels: 18
0.75 0.19 0.06
Matches are distributed among these distances:
44 34 0.14
45 198 0.84
46 4 0.02
ACGTcount: A:0.15, C:0.32, G:0.32, T:0.21
Consensus pattern (45 bp):
TCGATCACCATCGGCACACGTTGGGCCCTGGTGTGGGCGGTTGCC
Found at i:13944566 original size:114 final size:114
Alignment explanation
Indices: 13944358--13944578 Score: 255
Period size: 114 Copynumber: 1.9 Consensus size: 114
13944348 GTGCCTTGAG
* *
13944358 CACCATCGGCAGACGCTGGGCCCTAGTGTGGAAGGTTGCCAAGATCACCATCAGCACACGGTGGG
1 CACCATCGGCACACGCTGGGCCCCAGTGTGGAAGGTTGCCAAGATCACCATCAGCACACGGTGGG
** * * * * *
13944423 TGTTGGTGCAGGCGATTGCCTTGAGCACCATCGGCACACGCTAGTCGAT
66 CCTCGATGCAGGCGATTACCTCGAACACCATCGGCACACGCTAGTCGAT
* ** ** * * *
13944472 CACCATCGGCACACGTTGGGCCCCAGTGTGGGTGGTTGCCTTGATCACCATCGGTACACGTTGGG
1 CACCATCGGCACACGCTGGGCCCCAGTGTGGAAGGTTGCCAAGATCACCATCAGCACACGGTGGG
* *
13944537 CCTCGATGC-GGACGGTTACCTCGAACACCATCGGTACACGCT
66 CCTCGATGCAGG-CGATTACCTCGAACACCATCGGCACACGCT
13944579 GGGCCCTGGT
Statistics
Matches: 87, Mismatches: 19, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
113 2 0.02
114 85 0.98
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.20
Consensus pattern (114 bp):
CACCATCGGCACACGCTGGGCCCCAGTGTGGAAGGTTGCCAAGATCACCATCAGCACACGGTGGG
CCTCGATGCAGGCGATTACCTCGAACACCATCGGCACACGCTAGTCGAT
Found at i:13944643 original size:90 final size:90
Alignment explanation
Indices: 13944467--13944815 Score: 350
Period size: 90 Copynumber: 3.9 Consensus size: 90
13944457 CACACGCTAG
* * * * * **
13944467 TCGATCACCATCGGCACACGTTGGGCCCCAGTG-TGGGTGGTTGCCTTGATCACCATCGGTACAC
1 TCGAACACCATCGGCACACGCTGGGCCCTAGTGCT-GGCGGTTGCCTCGATCACCATCGACACAC
* * * * *
13944531 G-TTGGGCCTCGATGCGGACGGTTACC
65 GCTTGGCCCT-GGTGTGGGCGGTTGCC
* *
13944557 TCGAACACCATCGGTACACGCTGGGCCCTGGTGCTGGCGGTTGCCTCGATCACCATCGACACACG
1 TCGAACACCATCGGCACACGCTGGGCCCTAGTGCTGGCGGTTGCCTCGATCACCATCGACACACG
13944622 CTTGGCCCTGGTGTGGGCGGTTGCC
66 CTTGGCCCTGGTGTGGGCGGTTGCC
* * * *
13944647 TCCAACACCATCGAG-AAACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACAC
1 TCGAACACCATCG-GCACACGCTGGGCCCTAGTGCTGGCGGTTGCCTCGATCACCATCGACACAC
* *
13944711 GCTCT-GCCCTGGTGTGGGTGGTTGCA
65 GCT-TGGCCCTGGTGTGGGCGGTTGCC
* * * * * * * *
13944737 TCGAGCGCCATTGGCACACGGTGCG-CCTAGTAC-GAGCGGTCGCCTCGATCACCATCGACACAT
1 TCGAACACCATCGGCACACGCTGGGCCCTAGTGCTG-GCGGTTGCCTCGATCACCATCGACACAC
*
13944800 GCTGGGCCCTGGTGTG
65 GCTTGGCCCTGGTGTG
13944816 AGCTATACGG
Statistics
Matches: 221, Mismatches: 31, Indels: 15
0.83 0.12 0.06
Matches are distributed among these distances:
88 1 0.00
89 47 0.21
90 163 0.74
91 10 0.05
ACGTcount: A:0.15, C:0.32, G:0.32, T:0.21
Consensus pattern (90 bp):
TCGAACACCATCGGCACACGCTGGGCCCTAGTGCTGGCGGTTGCCTCGATCACCATCGACACACG
CTTGGCCCTGGTGTGGGCGGTTGCC
Found at i:13944948 original size:45 final size:45
Alignment explanation
Indices: 13944884--13945986 Score: 415
Period size: 45 Copynumber: 24.8 Consensus size: 45
13944874 ATTGCCTTGA
* * *
13944884 GCCCTGGTGCGGGCAGTTGCCTCGACCACCATCGACACACGTTAG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* *
13944929 GCCCTGGTGTGGGCGGTTGCCTCGATCACCATCGACACACGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
** * *
13944974 GCCCTGGTGCGGATGGTTGCCTCGAGCACCATCGACTCACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * * * *** * *
13945019 GCCCTGATGCGAGCGGTTACCTCCAATTCCATCGAAAAACGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * * * * **
13945064 GCCCTAGTGCGGGCGATTACCTCGATCACCATCGGCACACGTTCT
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * * * *
13945109 GCCTTGGTGTGGGCGGTTGCCTCGAGCACTATCGGCACACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * *
13945154 GCCCTGGTACGGGCGGTTGCCTCGATCACCATCGACACATGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * * *
13945199 GCCCTGGTGCGAGCTATGCGGACGGTTGCCTTGAGCACCATCGGCACACGCTAG
1 GCCCTGGT----GC---G-GG-CGGTTGCCTCGAGCACCATCGACACACGTTGG
* *
13945253 GCCCTGGTGTGGG-GGATTGCCTCGAG--CC-TTG------GTGTGG
1 GCCCTGGTGCGGGCGG-TTGCCTCGAGCACCATCGACACACGT-TGG
* * ** ** * * * * *
13945290 G-CAT-TTGC-CTCGACCAT-CATCGA-CACACGT-TA-AGCCCTGGTGCG
1 GCCCTGGTGCGGGCG--GTTGCCTCGAGCAC-CATCGACA-CAC-GTTG-G
* ** * **
13945334 G-GC-GGTTGC-CTCGATCACCATCGA-CA-CA-CG-----C--TGG
1 GCCCTGG-TGCGGGCGGTTGCC-TCGAGCACCATCGACACACGTTGG
* * * * * *
13945368 GCCCTGGTACGGGTGGTTTCCTCGAGCACCAACGGCACACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * * * * * *
13945413 GCCCTGATGCTGGTGGTTGCTTCGAACA-CATTGGCACACGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * * * * *
13945457 GCCCTAGTGCGAGCGTTTGCCTCGATCACCATCGGCACACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * * * * * * *
13945502 GCCCTGGTGTGGGCAGTTGCCTTGACCACCATCGGCAGAAGATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * * ** * * *
13945547 CCCCTGGTGCGGGCGGTTGCCTCGACCACCATTGGTAGAAGAT-G
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* ** * * * * *
13945591 GCCCTTGGTGCGAGCGGTTGTGTCGAACACCATCGGCACATGCTAG
1 GCCC-TGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * * *** *
13945637 GCCCTGGTGTGAGCGGTTGCCTCGAACACCATCGACATGTGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * * *
13945682 GCCTTGGTGCGGGAGGTTGCCTCGAGCACCATCGACACAAGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * ** * * * ***
13945727 TCCATGGTGCGGGCTCTTGCCTCGACCACCATCGGCAGAAAATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* * * * * * *
13945772 CCCCTGGTGCGGGCGATTGCATCGAACACCATC-AGCATATGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGA-CACACGTTGG
* * * * * *
13945817 GCCCTGGTGCGGGTGATTACCTCGAACACCATCGGCACACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
* *
13945862 GCCCTGGTGCGGGCGGTTACCTCGAGCACCAT-TAGCACAC-TCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGA-CACACGT-TGG
* * * * * * **
13945907 GCCTTGGTACGGGCGATTGCTTCGAGCACCATCGGCACAAG-CCG
1 GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
** * *
13945951 GCCCTTGGTGCGGGCTCTTGCCTCAACCACCATCGA
1 GCCC-TGGTGCGGGCGGTTGCCTCGAGCACCATCGA
13945987 TAGAAGATGG
Statistics
Matches: 799, Mismatches: 205, Indels: 108
0.72 0.18 0.10
Matches are distributed among these distances:
34 2 0.00
35 17 0.02
36 13 0.02
37 6 0.01
38 4 0.01
42 2 0.00
43 6 0.01
44 47 0.06
45 655 0.82
46 7 0.01
47 1 0.00
49 1 0.00
50 1 0.00
52 1 0.00
53 2 0.00
54 34 0.04
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.21
Consensus pattern (45 bp):
GCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACGTTGG
Found at i:13945920 original size:135 final size:135
Alignment explanation
Indices: 13945323--13945985 Score: 573
Period size: 135 Copynumber: 4.9 Consensus size: 135
13945313 CACACGTTAA
* * * * *
13945323 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTGGTACGGGTGGTTTC
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGATTGC
* * * * * * * * *
13945388 CTCGAGCACCAACGGCACACGCTGGGCCCTGATGCTGGTGGTTGCTTCGAACA-CATTGGCACAC
66 CTCGAACACCATCGGCATATGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAACACCATCGGCACAA
*
13945452 GTTGG
131 GCTGG
* * * *
13945457 GCCCTAGTGCGAGCGTTTGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTGTGGGC-AGTTG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGA-TTG
* * * * * * * * * * *
13945521 CCTTGACCACCATCGGCAGAAGATGGCCCCTGGTGCGGGCGGTTGCCTCGACCACCATTGGTAGA
65 CCTCGAACACCATCGGCATATGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAACACCATCGGCACA
*
13945586 AGAT-G
130 AGCTGG
* ** * * * * * *
13945591 GCCCTTGGTGCGAGCGGTTGTGTCGAACACCATCGGCACATGCTAGGCCCTGGTGTGAGCGGTTG
1 GCCC-TGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGATTG
* * * * * *
13945656 CCTCGAACACCATCGACATGTGCTGGGCCTTGGTGCGGGAGGTTGCCTCGAGCACCATCGACACA
65 CCTCGAACACCATCGGCATATGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAACACCATCGGCACA
13945721 AGCTGG
130 AGCTGG
* * ** * * *** *
13945727 TCCATGGTGCGGGCTCTTGCCTCGACCACCATCGGCAGAAAATGGCCCCTGGTGCGGGCGATTGC
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGATTGC
* * * * *
13945792 ATCGAACACCATCAGCATATGCTGGGCCCTGGTGCGGGTGATTACCTCGAACACCATCGGCACAC
66 CTCGAACACCATCGGCATATGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAACACCATCGGCACAA
13945857 GCTGG
131 GCTGG
* * ** * * *
13945862 GCCCTGGTGCGGGCGGTTACCTCGAGCACCATTAGCACACTCTGGGCCTTGGTACGGGCGATTGC
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGATTGC
* * * * * *
13945927 TTCGAGCACCATCGGCACAAGC-CGGCCCTTGGTGCGGGCT-CTTGCCTC-AACCACCATCG
66 CTCGAACACCATCGGCATATGCTGGGCCC-TGGTGCGGG-TGGTTGCCTCGAA-CACCATCG
13945986 ATAGAAGATG
Statistics
Matches: 420, Mismatches: 101, Indels: 15
0.78 0.19 0.03
Matches are distributed among these distances:
134 108 0.26
135 308 0.73
136 4 0.01
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (135 bp):
GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTGCGGGCGATTGC
CTCGAACACCATCGGCATATGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAACACCATCGGCACAA
GCTGG
Found at i:13948685 original size:45 final size:45
Alignment explanation
Indices: 13948569--13948787 Score: 219
Period size: 45 Copynumber: 4.9 Consensus size: 45
13948559 GAGTATGCCC
* * *
13948569 TGGTGCGGGCGGTTGCCTCGAA-CACCA-CTGGCACAAGCTGGGCCC
1 TGGTGCGGGCGGTTGCCTC-AAGCACCATC-GGCACACGCTAGGCCT
* ** ** * * *
13948614 TAGTGCGAACAATTGCCTCGAA-CACCATCGGCACACGTTGGGCCC
1 TGGTGCGGGCGGTTGCCTC-AAGCACCATCGGCACACGCTAGGCCT
* * *
13948659 TGGTGCGGGCGGTTACTTCAAGCACCATCTGCACACGCTAGGCCT
1 TGGTGCGGGCGGTTGCCTCAAGCACCATCGGCACACGCTAGGCCT
* * *
13948704 TGGTGCAGGCGGTTGCCTCTAGCACCATCAGCACACGCTAGGCCT
1 TGGTGCGGGCGGTTGCCTCAAGCACCATCGGCACACGCTAGGCCT
* *
13948749 TGGTACGGGCGGTTGCCTCGAGCACCATCGGCACACGCT
1 TGGTGCGGGCGGTTGCCTCAAGCACCATCGGCACACGCT
13948788 GGTCGATCAC
Statistics
Matches: 145, Mismatches: 27, Indels: 4
0.82 0.15 0.02
Matches are distributed among these distances:
44 2 0.01
45 142 0.98
46 1 0.01
ACGTcount: A:0.18, C:0.33, G:0.30, T:0.19
Consensus pattern (45 bp):
TGGTGCGGGCGGTTGCCTCAAGCACCATCGGCACACGCTAGGCCT
Found at i:13948798 original size:24 final size:24
Alignment explanation
Indices: 13948766--13948813 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
13948756 GGCGGTTGCC
* *
13948766 TCGAGCACCATCGGCACACGCTGG
1 TCGAGCACCAACGACACACGCTGG
* *
13948790 TCGATCACCAACGACACATGCTGG
1 TCGAGCACCAACGACACACGCTGG
13948814 GCCCCAATGT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.25, C:0.35, G:0.25, T:0.15
Consensus pattern (24 bp):
TCGAGCACCAACGACACACGCTGG
Found at i:13948858 original size:45 final size:45
Alignment explanation
Indices: 13948790--13949083 Score: 243
Period size: 45 Copynumber: 6.5 Consensus size: 45
13948780 CACACGCTGG
* * ***
13948790 TCGATCACCAACGACACATGCTGGGCCCCAATGTGGGCGGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGTGGGCGGTTGCC
* * *
13948835 TCGATCACCATCGACAAACGCTGGGCCCTGGTGCT-AGCGGTTACC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTG-TGGGCGGTTGCC
* * *
13948880 TCGAACACCATC-AGCACACGCTGGGCCCTGGTGCT-GACGGTTACC
1 TCGATCACCATCGA-CACACGCTGGGCCCTGGTG-TGGGCGGTTGCC
* * * * **
13948925 TAGATCACCATCGGCATACGCTCGGCCCTGGTAAGGGCGGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGTGGGCGGTTGCC
* * * *** *
13948970 TCCAACACCATCGACAAACGCTGGGCCCTGGTACAGACGGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGTGGGCGGTTGCC
* * * * * *
13949015 TCGATCACCATTGGCACACGCTCGGCCCTGATGCGGGCGATTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGTGGGCGGTTGCC
* * *
13949060 TCGAGCACCATCGGCACACACTGG
1 TCGATCACCATCGACACACGCTGG
13949084 TCGGTCGCCA
Statistics
Matches: 200, Mismatches: 45, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
44 1 0.00
45 198 0.99
46 1 0.00
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.18
Consensus pattern (45 bp):
TCGATCACCATCGACACACGCTGGGCCCTGGTGTGGGCGGTTGCC
Found at i:13948952 original size:90 final size:89
Alignment explanation
Indices: 13948827--13950332 Score: 346
Period size: 90 Copynumber: 16.7 Consensus size: 89
13948817 CCAATGTGGG
* * ** *
13948827 CGGTTGCCTCGATCACCATCGACAAACGCTGGGCCCTGGTGCTAGCGGTTACCTCGAACACCATC
1 CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATC
* *
13948892 AGCACACGCTGGGCCCTGGTGCTGA
66 -GCACACGCTGGGCCCTGGTACAGA
* * * ** *
13948917 CGGTTACCTAGATCACCATCGGCATACGCTCGGCCCTGGTAAGGGCGGTTGCCTCCAACACCATC
1 CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATC
*
13948982 GACAAACGCTGGGCCCTGGTACAGA
66 G-CACACGCTGGGCCCTGGTACAGA
* * * * *
13949007 CGGTTGCCTCGATCACCATTGGCACACGCTCGGCCCTGATGCGGGCGATTGCCTCGAGCACCATC
1 CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATC
* * *
13949072 GGCACACACTGGTCGGTCGCCATCG-ACACA
66 -GCACACGCT-G--GG-C-CC-TGGTACAGA
* * * * ** ** * * ** * **** * ** * ** *
13949102 CGCTAGGCCCTGCTACTGACGGTTGCCTCAATCAC-CATCGACAAACGCTAGGCCCTGGTGTTG-
1 CGGT-TG-CCT-CGA-TCAC-CAT-CGGCAAACGCTCGGC-CCTGGTGC-GGGCGGTTGCCTCGA
* * * * * *
13949165 ACA--GT--TAC-CTC-GAGCCCTTGTGC-GA
58 ACACCATCGCACACGCTGGGCCCTGGTACAGA
* * * * * * * *
13949190 GCGGTTACCTCGAGCACCATCGGCACACACTGGGCCCTGATGCGGGCAGTTACCTCGAACACCAT
1 -CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCAT
* * * * *
13949255 CGGTACATGTTGGGCCCTAGTACAGG
65 C-GCACACGCTGGGCCCTGGTACAGA
* * * * * * * * * * *
13949281 TGATTGCCTTGATCACCATCGGCACATGCTGGGCCATGGTGCAGGCAGTTGCCTCGACCACTATC
1 CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATC
* * * * * * *** *
13949346 GATAGAAGATGGCCCCTAGTGTGGG
66 G-CACACGCTGGGCCCTGGTACAGA
* * * * * *
13949371 CGGTCGCCTCGACCACCATCGGTAGAA-GAT-GGCCCCTGGTGCAGGCGGTTACAC-CGAACACC
1 CGGTTGCCTCGATCACCATCGGCA-AACGCTCGG-CCCTGGTGCGGGCGGTTGC-CTCGAACACC
* * * *
13949433 ATCGGCATATGCTGGGCCCTGGTACGGG
63 ATC-GCACACGCTGGGCCCTGGTACAGA
* * *** * * * *
13949461 CGGTTACCTCGAACACCATCGGCACGTGCTGGGCCTTGGTGCGGGAGGTTGCCTCGAGCACCATC
1 CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATC
* * * *
13949526 GACACAAGCT-GGCCCTTGGTGCGGG
66 G-CACACGCTGGGCCC-TGGTACAGA
** ** * ** ** * * *
13949551 CTCTTGGGTCGACCACCATCGATAGAA-AAT-GGCCCCTGGTGCGAGCGATTGCGTCGAACACCA
1 CGGTTGCCTCGATCACCATCGGCA-AACGCTCGG-CCCTGGTGCGGGCGGTTGCCTCGAACACCA
* * * * *
13949614 TCGGCATACACTGGGCCCTGGTGCGGG
64 TC-GCACACGCTGGGCCCTGGTACAGA
* * * * ** *
13949641 CGGTTGCCTCGAACACCATCGGCACACACTGGGCCCTGGTGATGGCGGTTGCCTCGAGCACCATG
1 CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCAT-
* * * ** * * *
13949706 GGTAGA-AAT-GGCCCTTCGTGCAGG
65 CGCACACGCTGGGCCC-TGGTACAGA
* * * * * * * *
13949730 CGGTTGCCTCGAACACCACCGGCACACGCT-GGCCATGGTACGGGCGATTACCTCGATCACCATC
1 CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATC
* *
13949794 GGCACACGCTGGGCCCTGGTACGGG
66 -GCACACGCTGGGCCCTGGTACAGA
* * * * * ** * * ** * *
13949819 TGATTACCTGGACCACCATCACCACAA-TCT-GACCCTTGGTGCGGGCTCTTGCCTCGACCATCA
1 CGGTTGCCTCGATCACCATCGGCA-AACGCTCGGCCC-TGGTGCGGGCGGTTGCCTCGAACACCA
* * * * * * * * * *
13949882 TTGATAGAAGATGGCCCCTAGTGCGGG
64 TCG-CACACGCTGGGCCCTGGTACAGA
* * * * * * * *
13949909 CGGTTGCATCGAACACCATTGGCATACGTTGGGCCCTGGTGCGGGCGGTTGCATCGATCACCATC
1 CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATC
* *** *
13949974 GGCACACGCTGAGCCCTGGTGTGGG
66 -GCACACGCTGGGCCCTGGTACAGA
* * * * * * * * *
13949999 CTGTTGCCTCAATCACCATCGACACACGCTAGGCCCTGGTGCGGGCTGTTACCTCGATCACCACC
1 CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATC
* * *
13950064 GGCACACGCTGGGGCCTGTTA-TGA
66 -GCACACGCTGGGCCCTGGTACAGA
* * * * * * ** * *
13950088 GCGGTTGCCTCAAACACCATCGACACAA-G-TCGGCTCTTGGCGCGAGCTCTTACCTCG-AGACC
1 -CGGTTGCCTCGATCACCATCGGCA-AACGCTCGGC-CCTGGTGCGGGCGGTTGCCTCGAACACC
* *
13950150 ATCGACACACGCTGGGCCCTGGTGCAGG
63 ATCG-CACACGCTGGGCCCTGGTACAGA
* * * * * * * * **
13950178 CGGTTGCCTCGAACACCATTGGCACACACTGGGCCCTGTTGTGGGCAGTTGCCTCGATGACCATC
1 CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATC
* ** *
13950243 AGCCCA-GCTGGGCCCTGGTATGGC
66 -GCACACGCTGGGCCCTGGTACAGA
* * * * * * * * *
13950267 CGGTTACCTCGAGCACCATCGGCACACGCTGGGCCTTGGTACGGGTGGTTGCTTCGAGCACCATC
1 CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATC
13950332 G
66 G
13950333 GCATAAACTA
Statistics
Matches: 1020, Mismatches: 332, Indels: 130
0.69 0.22 0.09
Matches are distributed among these distances:
82 6 0.01
83 13 0.01
84 2 0.00
85 3 0.00
86 2 0.00
87 3 0.00
88 43 0.04
89 214 0.21
90 661 0.65
91 24 0.02
93 3 0.00
94 1 0.00
95 11 0.01
96 5 0.00
97 3 0.00
98 2 0.00
99 4 0.00
100 3 0.00
101 10 0.01
102 7 0.01
ACGTcount: A:0.19, C:0.32, G:0.29, T:0.20
Consensus pattern (89 bp):
CGGTTGCCTCGATCACCATCGGCAAACGCTCGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATC
GCACACGCTGGGCCCTGGTACAGA
Found at i:13948965 original size:204 final size:204
Alignment explanation
Indices: 13948626--13948993 Score: 495
Period size: 204 Copynumber: 1.8 Consensus size: 204
13948616 GTGCGAACAA
* * * * * *
13948626 TTGCCTCGAACACCATCGGCACACGTTGGGCCCTGGTGCGGGCGGTTACTTCAAGCACCATCTGC
1 TTGCCTCGAACACCATCGACAAACGCTGGGCCCTGGTGCGAGCGGTTACCTCAAGCACCATCAGC
* * * ** * *
13948691 ACACGCTAGGCCTTGGTGCAGGCGGTTGCCTCTAGCACCATCAGCACACGCTAGGCCTTGGTACG
66 ACACGCTAGGCCCTGGTGCAGACGGTTACCTAGAGCACCATCAGCACACGCTAGGCCCTGGTAAG
* * * *
13948756 GGCGGTTGCCTCGAGCACCATCGGCACACGCTGGTCGATCACCAACGACACATGCTGGGCCCCAA
131 GGCGGTTGCCTCCAACACCATCGACAAACGCTGGTCGATCACCAACGACACATGCTGGGCCCCAA
13948821 TGTGGGCGG
196 TGTGGGCGG
* *
13948830 TTGCCTCGATCACCATCGACAAACGCTGGGCCCTGGTGCTAGCGGTTACCTCGAA-CACCATCAG
1 TTGCCTCGAACACCATCGACAAACGCTGGGCCCTGGTGCGAGCGGTTACCTC-AAGCACCATCAG
* * * * * *
13948894 CACACGCTGGGCCCTGGTGCTGACGGTTACCTAGATCACCATCGGCATACGCTCGGCCCTGGTAA
65 CACACGCTAGGCCCTGGTGCAGACGGTTACCTAGAGCACCATCAGCACACGCTAGGCCCTGGTAA
13948959 GGGCGGTTGCCTCCAACACCATCGACAAACGCTGG
130 GGGCGGTTGCCTCCAACACCATCGACAAACGCTGG
13948994 GCCCTGGTAC
Statistics
Matches: 138, Mismatches: 25, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
204 136 0.99
205 2 0.01
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (204 bp):
TTGCCTCGAACACCATCGACAAACGCTGGGCCCTGGTGCGAGCGGTTACCTCAAGCACCATCAGC
ACACGCTAGGCCCTGGTGCAGACGGTTACCTAGAGCACCATCAGCACACGCTAGGCCCTGGTAAG
GGCGGTTGCCTCCAACACCATCGACAAACGCTGGTCGATCACCAACGACACATGCTGGGCCCCAA
TGTGGGCGG
Found at i:13949013 original size:249 final size:249
Alignment explanation
Indices: 13948575--13949036 Score: 592
Period size: 249 Copynumber: 1.9 Consensus size: 249
13948565 GCCCTGGTGC
* *
13948575 GGGCGGTTGCCTCGAACACCACTGGCACAAGCTGGGCCCTAGTGCGAACAATTGCCTCGAACACC
1 GGGCGGTTGCCTCGAACACCACTGACACAAGCTGGGCCCTAGTGCGAACAATTACCTCGAACACC
* * * * * *
13948640 ATCGGCACACGTTGGGCCCTGGTGCGGGCGGTTACTTCAAGCACCATCTGCACACGCTAGGCCTT
66 ATCAGCACACGCTGGGCCCTGGTGCGGACGGTTACCTCAAGCACCATCGGCACACGCTAGGCCCT
* * * * * * *
13948705 GGTGCAGGCGGTTGCCTCTAGCACCATCAGCACACGCTAGGCCTTGGTACGGGCGGTTGCCTCGA
131 GGTGAAGGCGGTTGCCTCCAACACCATCAGCAAACGCTAGGCCCTGGTACAGACGGTTGCCTCGA
13948770 GCACCATCGGCACACGCTGGTCGATCACCAACGACACATGCTGGGCCCCAATGT
196 GCACCATCGGCACACGCTGGTCGATCACCAACGACACATGCTGGGCCCCAATGT
* * * * **
13948824 GGGCGGTTGCCTCGATCACCA-TCGACA-AACGCTGGGCCCTGGTGCTAGCGGTTACCTCGAACA
1 GGGCGGTTGCCTCGAACACCACT-GACACAA-GCTGGGCCCTAGTGCGAACAATTACCTCGAACA
* * * *
13948887 CCATCAGCACACGCTGGGCCCTGGTGCTGACGGTTACCT-AGATCACCATCGGCATACGCTCGGC
64 CCATCAGCACACGCTGGGCCCTGGTGCGGACGGTTACCTCA-AGCACCATCGGCACACGCTAGGC
*
13948951 CCTGGT-AAGGGCGGTTGCCTCCAACACCATC-GACAAACGCTGGGCCCTGGTACAGACGGTTGC
128 CCTGGTGAA-GGCGGTTGCCTCCAACACCATCAG-CAAACGCTAGGCCCTGGTACAGACGGTTGC
* *
13949014 CTCGATCACCATTGGCACACGCT
191 CTCGAGCACCATCGGCACACGCT
13949037 CGGCCCTGAT
Statistics
Matches: 180, Mismatches: 28, Indels: 10
0.83 0.13 0.05
Matches are distributed among these distances:
248 6 0.03
249 174 0.97
ACGTcount: A:0.20, C:0.34, G:0.28, T:0.18
Consensus pattern (249 bp):
GGGCGGTTGCCTCGAACACCACTGACACAAGCTGGGCCCTAGTGCGAACAATTACCTCGAACACC
ATCAGCACACGCTGGGCCCTGGTGCGGACGGTTACCTCAAGCACCATCGGCACACGCTAGGCCCT
GGTGAAGGCGGTTGCCTCCAACACCATCAGCAAACGCTAGGCCCTGGTACAGACGGTTGCCTCGA
GCACCATCGGCACACGCTGGTCGATCACCAACGACACATGCTGGGCCCCAATGT
Found at i:13949069 original size:135 final size:135
Alignment explanation
Indices: 13948824--13949075 Score: 353
Period size: 135 Copynumber: 1.9 Consensus size: 135
13948814 GCCCCAATGT
* * *
13948824 GGGCGGTTGCCTCGATCACCATCGACAAACGCTGGGCCCTGGTGCTAGCGGTTACCTCGAACACC
1 GGGCGGTTGCCTCCAACACCATCGACAAACGCTGGGCCCTGGTACTAGCGGTTACCTCGAACACC
* * * * *
13948889 ATCAGCACACGCTGGGCCCTGGTGCTGACGGTTACCTAGATCACCATCGGCATACGCTCGGCCCT
66 ATCAGCACACGCTCGGCCCTGATGCGGACGATTACCTAGAGCACCATCGGCATACGCTCGGCCCT
13948954 GGTAA
131 GGTAA
* *
13948959 GGGCGGTTGCCTCCAACACCATCGACAAACGCTGGGCCCTGGTAC-AGACGGTTGCCTCGATCAC
1 GGGCGGTTGCCTCCAACACCATCGACAAACGCTGGGCCCTGGTACTAG-CGGTTACCTCGAACAC
** * * *
13949023 CATTGGCACACGCTCGGCCCTGATGCGGGCGATTGCCTCGAGCACCATCGGCA
65 CATCAGCACACGCTCGGCCCTGATGCGGACGATTACCTAGAGCACCATCGGCA
13949076 CACACTGGTC
Statistics
Matches: 101, Mismatches: 15, Indels: 2
0.86 0.13 0.02
Matches are distributed among these distances:
134 2 0.02
135 99 0.98
ACGTcount: A:0.19, C:0.34, G:0.29, T:0.18
Consensus pattern (135 bp):
GGGCGGTTGCCTCCAACACCATCGACAAACGCTGGGCCCTGGTACTAGCGGTTACCTCGAACACC
ATCAGCACACGCTCGGCCCTGATGCGGACGATTACCTAGAGCACCATCGGCATACGCTCGGCCCT
GGTAA
Found at i:13949101 original size:294 final size:293
Alignment explanation
Indices: 13948565--13949161 Score: 709
Period size: 294 Copynumber: 2.0 Consensus size: 293
13948555 AAAGGAGTAT
* * * *
13948565 GCCCTGGTGCGGGCGGTTGCCTCGAACACCACTGGCACAAGCTGGGCCCTAGTGCGAACAATTGC
1 GCCCTGGTGCGAGCGGTTACCTCGAACACCACTAGCACAAGCTGGGCCCTAGTGCGAACAATTAC
* * * ** * *
13948630 CTCGAACACCATCGGCACACGTTGGGCCCTGGTGCGGGCGGTTACTTCAAGCACCATCTGCACAC
66 CTAGAACACCATCGGCACACGCTCGGCCCTGGTAAGGGCGGTTACTCCAAGCACCATCTGCAAAC
* * * * * *
13948695 GCTAGGCCTTGGTGCAGGCGGTTGCCTCTAGCACCATCAGCACACGCTAGGCCTTGGTACGGGCG
131 GCTAGGCCCTGGTACAGACGGTTGCCTCGAGCACCATCAGCACACGCTAGGCCCTGATACGGGCG
* * * * *
13948760 GTTGCCTCGAGCACCATCGGCACACGCTGGTCGATCACCAACGACACATGCTGGGCCC-CAATGT
196 ATTGCCTCGAGCACCATCGGCACACACTGGTCGATCACCAACGACACACGCTAGGCCCGCAA-CT
* * *
13948824 GGGCGGTTGCCTCGATCACCATCGACAAACGCTGG
260 -GACGGTTGCCTCAATCACCATCGACAAACGCTAG
* * * **
13948859 GCCCTGGTGCTAGCGGTTACCTCGAACACCA-TCAGCACACGCTGGGCCCTGGTGCTG-ACGGTT
1 GCCCTGGTGCGAGCGGTTACCTCGAACACCACT-AGCACAAGCTGGGCCCTAGTGC-GAACAATT
* * *
13948922 ACCTAGATCACCATCGGCATACGCTCGGCCCTGGTAAGGGCGGTTGCCTCCAA-CACCATC-GAC
64 ACCTAGAACACCATCGGCACACGCTCGGCCCTGGTAAGGGCGGTT-ACTCCAAGCACCATCTG-C
* * ** * *
13948985 AAACGCTGGGCCCTGGTACAGACGGTTGCCTCGATCACCATTGGCACACGCTCGGCCCTGATGCG
127 AAACGCTAGGCCCTGGTACAGACGGTTGCCTCGAGCACCATCAGCACACGCTAGGCCCTGATACG
* * *
13949050 GGCGATTGCCTCGAGCACCATCGGCACACACTGGTCGGTCGCCATCGACACACGCTAGGCCCTGC
192 GGCGATTGCCTCGAGCACCATCGGCACACACTGGTCGATCACCAACGACACACGCTAGGCCC-GC
*
13949115 TACTGACGGTTGCCTCAATCACCATCGACAAACGCTAG
256 AACTGACGGTTGCCTCAATCACCATCGACAAACGCTAG
13949153 GCCCTGGTG
1 GCCCTGGTG
13949162 TTGACAGTTA
Statistics
Matches: 254, Mismatches: 43, Indels: 12
0.82 0.14 0.04
Matches are distributed among these distances:
293 2 0.01
294 243 0.96
295 7 0.03
296 2 0.01
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.18
Consensus pattern (293 bp):
GCCCTGGTGCGAGCGGTTACCTCGAACACCACTAGCACAAGCTGGGCCCTAGTGCGAACAATTAC
CTAGAACACCATCGGCACACGCTCGGCCCTGGTAAGGGCGGTTACTCCAAGCACCATCTGCAAAC
GCTAGGCCCTGGTACAGACGGTTGCCTCGAGCACCATCAGCACACGCTAGGCCCTGATACGGGCG
ATTGCCTCGAGCACCATCGGCACACACTGGTCGATCACCAACGACACACGCTAGGCCCGCAACTG
ACGGTTGCCTCAATCACCATCGACAAACGCTAG
Found at i:13949181 original size:25 final size:25
Alignment explanation
Indices: 13949153--13949204 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
13949143 CAAACGCTAG
*
13949153 GCCCTGGTGTTGA-CAGTTACCTCGA
1 GCCCTGGTG-CGAGCAGTTACCTCGA
* *
13949178 GCCCTTGTGCGAGCGGTTACCTCGA
1 GCCCTGGTGCGAGCAGTTACCTCGA
13949203 GC
1 GC
13949205 ACCATCGGCA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 2 0.09
25 21 0.91
ACGTcount: A:0.13, C:0.31, G:0.31, T:0.25
Consensus pattern (25 bp):
GCCCTGGTGCGAGCAGTTACCTCGA
Found at i:13949244 original size:45 final size:45
Alignment explanation
Indices: 13949178--13950335 Score: 656
Period size: 45 Copynumber: 25.8 Consensus size: 45
13949168 GTTACCTCGA
* * * *
13949178 GCCCTTGTGCGAGCGGTTACCTCGAGCACCATCGGCACACACTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * * ***
13949223 GCCCTGATGCGGGCAGTTACCTCGAACACCATCGGTACATGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * * * * * **
13949268 GCCCTAGTACAGGTGATTGCCTTGATCACCATCGGCACATGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * * * ** * *
13949313 GCCATGGTGCAGGCAGTTGCCTCGACCACTATCGATAGA-AGATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACA-CTGG
* * * * * * * *
13949358 CCCCTAGTGTGGGCGGTCGCCTCGACCACCATCGGTAGA-AGATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACA-CTGG
* * * * **
13949403 CCCCTGGTGCAGGCGGTTACAC-CGAACACCATCGGCATATGCTGG
1 GCCCTGGTGCGGGCGGTTGC-CTCGAACACCATCGGCACACACTGG
* * ***
13949448 GCCCTGGTACGGGCGGTTACCTCGAACACCATCGGCACGTGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * *
13949493 GCCTTGGTGCGGGAGGTTGCCTCGAGCACCATCGACACA-AGCT-G
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACA-CTGG
** ** * ** * * *
13949537 GCCCTTGGTGCGGGCTCTTGGGTCGACCACCATCGATAGAAAATGG
1 GCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * * *
13949583 CCCCTGGTGCGAGCGATTGCGTCGAACACCATCGGCATACACTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
13949628 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
** * * * * *
13949673 GCCCTGGTGATGGCGGTTGCCTCGAGCACCATGGGTAGA-AAT-G
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * *
13949716 GCCCTTCGTGCAGGCGGTTGCCTCGAACACCACCGGCACACGCT-G
1 GCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * * * *
13949761 GCCATGGTACGGGCGATTACCTCGATCACCATCGGCACACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * * * * **
13949806 GCCCTGGTACGGGTGATTACCTGGACCACCATCACCACA-ATCT-G
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACA-CTGG
* ** * * * ** * *
13949850 ACCCTTGGTGCGGGCTCTTGCCTCGACCATCATTGATAGA-AGATGG
1 GCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACA-CTGG
* * * * * **
13949896 CCCCTAGTGCGGGCGGTTGCATCGAACACCATTGGCATACGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * *
13949941 GCCCTGGTGCGGGCGGTTGCATCGATCACCATCGGCACACGCTGA
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * * *
13949986 GCCCTGGTGTGGGCTGTTGCCTC-AATCACCATCGACACACGCTAG
1 GCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACACACTGG
* * * * *
13950031 GCCCTGGTGCGGGCTGTTACCTCGATCACCACCGGCACACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * ** * * * * *
13950076 GGCCTGTTATGAGCGGTTGCCTCAAACACCATCGACACA-AGTCG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * ** * * * *
13950120 GCTCTTGGCGCGAGCTCTTACCTCG-AGACCATCGACACACGCTGG
1 GC-CCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* *
13950165 GCCCTGGTGCAGGCGGTTGCCTCGAACACCATTGGCACACACTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * ** *
13950210 GCCCTGTTGTGGGCAGTTGCCTCGATGACCATCAGC-C-CAGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACA-CTGG
** * * * *
13950254 GCCCTGGTATGGCCGGTTACCTCGAGCACCATCGGCACACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
* * * * *
13950299 GCCTTGGTACGGGTGGTTGCTTCGAGCACCATCGGCA
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCA
13950336 TAAACTAGCA
Statistics
Matches: 856, Mismatches: 234, Indels: 46
0.75 0.21 0.04
Matches are distributed among these distances:
43 7 0.01
44 135 0.16
45 702 0.82
46 12 0.01
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGG
Found at i:13949860 original size:313 final size:315
Alignment explanation
Indices: 13949359--13950076 Score: 874
Period size: 313 Copynumber: 2.3 Consensus size: 315
13949349 AGAAGATGGC
* * *
13949359 CCCTAGTGTGGGCGGTCGCCTCGACCACCATCGGTAGAAGATGGCCCCTGGTGCAGGCGGTTACA
1 CCCTGGTGTGGGCGGTTGCCTCGACCACCATCGGTAGAAGATGGCCCCTCGTGCAGGCGGTTACA
* * * * * **
13949424 CCGAACACCATCGGCATATGCTGGGCCCTGGTACGGGCGGTTACCTCGAACACCATCGGCACGTG
66 CCGAACACCACCGGCACACGCTGGGCCATGGTACGGGCGATTACCTCGAACACCATCGGCACACG
* * * * * *
13949489 CTGGGCCTTGGTGCGGGAGGTTGCCTCGAGCACCATCGACACAAGCTGGCCCTTGGTGCGGGCTC
131 CTGGGCCCTGGTACGGGAGATTACCTCGACCACCATCGACACAAGCTGACCCTTGGTGCGGGCTC
** * *
13949554 TTGGGTCGACCACCATCGATAGAAAATGGCCCCTGGTGCGAGCGATTGCGTCGAACACCATCGGC
196 TTGCCTCGACCACCATCGATAGAAAATGGCCCCTAGTGCGAGCGATTGCATCGAACACCATCGGC
* *
13949619 ATACACTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACACTGGG
261 ATACACTGGGCCCTGGTGCGGGCGGTTGCATCGAACACCATCGGCACACACTGAG
* * * *
13949674 CCCTGGTGAT-GGCGGTTGCCTCGAGCACCATGGGTAGAA-ATGGCCCTTCGTGCAGGCGGTTGC
1 CCCTGGTG-TGGGCGGTTGCCTCGACCACCATCGGTAGAAGATGGCCCCTCGTGCAGGCGGTTAC
*
13949737 -CTCGAACACCACCGGCACACGCT-GGCCATGGTACGGGCGATTACCTCGATCACCATCGGCACA
65 AC-CGAACACCACCGGCACACGCTGGGCCATGGTACGGGCGATTACCTCGAACACCATCGGCACA
* * *
13949800 CGCTGGGCCCTGGTACGGGTGATTACCTGGACCACCATC-ACCACAATCTGACCCTTGGTGCGGG
129 CGCTGGGCCCTGGTACGGGAGATTACCTCGACCACCATCGA-CACAAGCTGACCCTTGGTGCGGG
* * * * * *
13949864 CTCTTGCCTCGACCATCATTGATAGAAGATGGCCCCTAGTGCGGGCGGTTGCATCGAACACCATT
193 CTCTTGCCTCGACCACCATCGATAGAAAATGGCCCCTAGTGCGAGCGATTGCATCGAACACCATC
** * *
13949929 GGCATACGTTGGGCCCTGGTGCGGGCGGTTGCATCGATCACCATCGGCACACGCTGAG
258 GGCATACACTGGGCCCTGGTGCGGGCGGTTGCATCGAACACCATCGGCACACACTGAG
* * * ** * * * * * *
13949987 CCCTGGTGTGGGCTGTTGCCTCAATCACCATCGACACACGCTAGG-CCCTGGTGCGGGCTGTTAC
1 CCCTGGTGTGGGCGGTTGCCTCGACCACCATCGGTAGAAGAT-GGCCCCTCGTGCAGGCGGTTAC
*
13950051 -CTCGATCACCACCGGCACACGCTGGG
65 AC-CGAACACCACCGGCACACGCTGGG
13950077 GCCTGTTATG
Statistics
Matches: 341, Mismatches: 55, Indels: 14
0.83 0.13 0.03
Matches are distributed among these distances:
312 2 0.01
313 225 0.66
314 76 0.22
315 37 0.11
316 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (315 bp):
CCCTGGTGTGGGCGGTTGCCTCGACCACCATCGGTAGAAGATGGCCCCTCGTGCAGGCGGTTACA
CCGAACACCACCGGCACACGCTGGGCCATGGTACGGGCGATTACCTCGAACACCATCGGCACACG
CTGGGCCCTGGTACGGGAGATTACCTCGACCACCATCGACACAAGCTGACCCTTGGTGCGGGCTC
TTGCCTCGACCACCATCGATAGAAAATGGCCCCTAGTGCGAGCGATTGCATCGAACACCATCGGC
ATACACTGGGCCCTGGTGCGGGCGGTTGCATCGAACACCATCGGCACACACTGAG
Found at i:13950231 original size:493 final size:493
Alignment explanation
Indices: 13949190--13950386 Score: 1192
Period size: 493 Copynumber: 2.4 Consensus size: 493
13949180 CCTTGTGCGA
* * * *
13949190 GCGGTTACCTCGAGCACCATCGGCACACACTGGGCCCTGATGCGGGCAGTTACCTCGAACACCAT
1 GCGGTTGCCTCGAGCACCATCGGCACACACTGGGCCCTGTTGTGGGCAGTTGCCTCGAACACCAT
* * * * * * * *
13949255 CGGTACATGTTGGGCCCTAGTACAGGTGATTGCCTTGATCACCATCGGCACATGCTGGGCCATGG
66 CGGCACA-GCTGGGCCCTGGTACGGGCGATTACCTCGATCACCATCGGCACACGCTGGGCCATGG
* * * * * * * * * * ** *
13949320 TGCAGG-CAGTTGCCTCGACCACTATCGATAGAAGA-TGGCCCCTAGTGTGGGCGGTCGCCTCGA
130 TACGGGTGA-TTGCCTCGACCACCATC-ACACAA-ACTGACCCTTGGTGCGGGCTCTTGCCTCGA
* *
13949383 CCACCATCGGTAGAAGATGGCCCCTGGTGCAGGCGGTTACACCGAACACCATCGGCATATGCTGG
192 CCACCATCGGTAGAAGATGGCCCCTAGTGCAGGCGGTTACACCGAACACCATCGGCATACGCTGG
* ** * *
13949448 GCCCTGGTACGGGCGGTTACCTCGAACACCATCGGCACGTGCTGGGCCTTGGTGCGGGAGGTTGC
257 GCCCTGGTACGGGCGGTTACATCGAACACCATCGGCACACGCTGAGCCCTGGTGCGGGAGGTTGC
* *** * * *
13949513 CTCGAGCACCATCGACACAAGCTGGCCCTTGGTGCGGGCTCTTGGGTCGACCACCATCGATAGAA
322 CTCAAGCACCATCGACACAAGCTGGCCCTTGGTGCGGGCTCTTACCTCGACCACCACCGACACAA
* * * * * * * *
13949578 AATGGCCCCTGGTGCGAGCGATTGCGTCGAACACCATCGGCATACACTGGGCCCTGGTGCGGGCG
387 AATGGCCCCTGGTACGAGCGATTGCCTCAAACACCATCGACACACACTCGGCCCTGGCGCGAGCG
* * *
13949643 GTTGCCTCGAACACCATCGGCACACACTGGGCCCTGGTGATG
452 CTTACCTCGAACACCATCGACACACACTGGGCCCTGGTGATG
* * * * * *
13949685 GCGGTTGCCTCGAGCACCATGGGTAGA-AAT-GGCCCT-TCGTGCAGGCGGTTGCCTCGAACACC
1 GCGGTTGCCTCGAGCACCATCGGCACACACTGGGCCCTGTTGTG--GGCAGTTGCCTCGAACACC
* * *
13949747 ACCGGCACACGCT-GGCCATGGTACGGGCGATTACCTCGATCACCATCGGCACACGCTGGGCCCT
64 ATCGGCACA-GCTGGGCCCTGGTACGGGCGATTACCTCGATCACCATCGGCACACGCTGGGCCAT
* * *
13949811 GGTACGGGTGATTACCTGGACCACCATCACCACAATCTGACCCTTGGTGCGGGCTCTTGCCTCGA
128 GGTACGGGTGATTGCCTCGACCACCATCA-CACAAACTGACCCTTGGTGCGGGCTCTTGCCTCGA
* * * * * * * *
13949876 CCATCATTGATAGAAGATGGCCCCTAGTGCGGGCGGTTGCATCGAACACCATTGGCATACGTTGG
192 CCACCATCGGTAGAAGATGGCCCCTAGTGCAGGCGGTTACACCGAACACCATCGGCATACGCTGG
* * * * **
13949941 GCCCTGGTGCGGGCGGTTGCATCGATCACCATCGGCACACGCTGAGCCCTGGTGTGGGCTGTTGC
257 GCCCTGGTACGGGCGGTTACATCGAACACCATCGGCACACGCTGAGCCCTGGTGCGGGAGGTTGC
* * * * *
13950006 CTCAATCACCATCGACACACGCTAGGCCC-TGGTGCGGGCTGTTACCTCGATCACCACCGGCACA
322 CTCAAGCACCATCGACACAAGCT-GGCCCTTGGTGCGGGCTCTTACCTCGACCACCACCGACACA
*** ** * * * * *
13950070 CGCTGGGGCCTGTTATGAGCGGTTGCCTCAAACACCATCGACACA-AGTCGGCTCTTGGCGCGAG
386 AAATGGCCCCTGGTACGAGCGATTGCCTCAAACACCATCGACACACACTCGGC-CCTGGCGCGAG
* * *
13950134 CTCTTACCTCG-AGACCATCGACACACGCTGGGCCCTGGTGCA-G
450 CGCTTACCTCGAACACCATCGACACACACTGGGCCCTGGTG-ATG
* * **
13950177 GCGGTTGCCTCGAACACCATTGGCACACACTGGGCCCTGTTGTGGGCAGTTGCCTCGATGACCAT
1 GCGGTTGCCTCGAGCACCATCGGCACACACTGGGCCCTGTTGTGGGCAGTTGCCTCGAACACCAT
* * * * * * *
13950242 CAGCCCAGCTGGGCCCTGGTATGGCCGGTTACCTCGAGCACCATCGGCACACGCTGGGCCTTGGT
66 CGGCACAGCTGGGCCCTGGTACGGGCGATTACCTCGATCACCATCGGCACACGCTGGGCCATGGT
* * * * * * *
13950307 ACGGGTGGTTGCTTCGAGCACCATCGGCATAAACT-AGCACTTGGTGCAGGCTCTTGCCTCGACC
131 ACGGGTGATTGCCTCGACCACCATC-ACACAAACTGA-CCCTTGGTGCGGGCTCTTGCCTCGACC
13950371 ACCATCGGTAGAAGAT
194 ACCATCGGTAGAAGAT
13950387 AGCCTCTACA
Statistics
Matches: 562, Mismatches: 126, Indels: 30
0.78 0.18 0.04
Matches are distributed among these distances:
492 62 0.11
493 433 0.77
494 40 0.07
495 27 0.05
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (493 bp):
GCGGTTGCCTCGAGCACCATCGGCACACACTGGGCCCTGTTGTGGGCAGTTGCCTCGAACACCAT
CGGCACAGCTGGGCCCTGGTACGGGCGATTACCTCGATCACCATCGGCACACGCTGGGCCATGGT
ACGGGTGATTGCCTCGACCACCATCACACAAACTGACCCTTGGTGCGGGCTCTTGCCTCGACCAC
CATCGGTAGAAGATGGCCCCTAGTGCAGGCGGTTACACCGAACACCATCGGCATACGCTGGGCCC
TGGTACGGGCGGTTACATCGAACACCATCGGCACACGCTGAGCCCTGGTGCGGGAGGTTGCCTCA
AGCACCATCGACACAAGCTGGCCCTTGGTGCGGGCTCTTACCTCGACCACCACCGACACAAAATG
GCCCCTGGTACGAGCGATTGCCTCAAACACCATCGACACACACTCGGCCCTGGCGCGAGCGCTTA
CCTCGAACACCATCGACACACACTGGGCCCTGGTGATG
Found at i:13958191 original size:26 final size:26
Alignment explanation
Indices: 13958152--13958204 Score: 74
Period size: 26 Copynumber: 2.0 Consensus size: 26
13958142 CCTGTCCGAT
13958152 CTTAGACTAGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
13958178 CTTAGACT-GAGAATGAACTCTGTATG
1 CTTAGACTAG-GAATGAACTCTGTATG
13958204 C
1 C
13958205 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
25 1 0.04
26 23 0.92
27 1 0.04
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:13958378 original size:171 final size:168
Alignment explanation
Indices: 13958177--13958738 Score: 495
Period size: 171 Copynumber: 3.3 Consensus size: 168
13958167 AACTTCGTAT
* * *
13958177 GCTTAGACTGAGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGCGCGGGCGCTCAG
1 GCTTAGACTG-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * *
13958242 CTTG-TCGGAGAGGCATAATACGTAAGCCGAGGATCTGTCTGGTCCCACTCTGCGTGCTACT-GA
65 C-TGACCGGAGAGGCATAATGCGTAAGTCGAGGATC-GACTGATCCCCCTCTGCGTGCT-CTCGA
*
13958305 TCCCGCTGCCGGTCTAGCTACCACAACCCTCGGTCTGGCTAGG
127 TCCCGCTGCCGGTC-AGCTACCACAACCCTCGGTCTGACTAGG
* * * * * * *
13958348 GCTTAGACATGGAATGAACTCCGTATGCCTAAGCCAAACCACAAAATGAGCGTACAGGCGCTTAG
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
13958413 CTGACCGGAGAGGTAGGATGCGTAAATCGGGGATCGACTCGATCCCCCTCTGCGTGCTGCTGTCG
65 CTGACCGGAGAGGCATAATGCGTAAGTCGAGGATCGACT-GATCCCCCTCTGCGTGCT-C--TCG
* * * * ** ** * ** **
13958478 ATCCCGTTACCGGTC--CGATC-TTAGGCTGGGAATGAACTCCATAT
126 ATCCCGCTGCCGGTCAGCTACCACAACCCTCGGTCTG-ACT--A-GG
* * *
13958522 GCTTAGACTGGAAAAGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAG
1 GCTTAGACTGG-AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
13958587 CTGACCGGAGAGGCATAATGCGTAAGTCAAGGATCGACCCGATCCCCCTCTGCGTGGTGTCGATC
65 CTGACCGGAGAGGCATAATGCGTAAGTCGAGGATCGA-CTGATCCCCCTCTGCGTGCTCTCGATC
* * * * *
13958652 GCGCTGCCTGTCCAGCTACCACAACCCTCGGTCCGCCTGGG
129 CCGCTGCCGGT-CAGCTACCACAACCCTCGGTCTGACTAGG
*
13958693 GCTTAGACATGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
1 GCTTAGAC-TGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
13958739 TGAACGGGCG
Statistics
Matches: 299, Mismatches: 75, Indels: 34
0.73 0.18 0.08
Matches are distributed among these distances:
170 12 0.04
171 150 0.50
172 6 0.02
173 5 0.02
174 119 0.40
175 7 0.02
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (168 bp):
GCTTAGACTGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
TGACCGGAGAGGCATAATGCGTAAGTCGAGGATCGACTGATCCCCCTCTGCGTGCTCTCGATCCC
GCTGCCGGTCAGCTACCACAACCCTCGGTCTGACTAGG
Found at i:13958514 original size:345 final size:345
Alignment explanation
Indices: 13958014--13958741 Score: 903
Period size: 345 Copynumber: 2.1 Consensus size: 345
13958004 CTTAGATCGA
* * * *
13958014 GAATGAA-TCTCGTATGCCTAAGTCAACCCCCAAAATGAGCGTGCGGGCGCTGAGCCGGCCGGAG
1 GAATGAACTC-CGTATGCCTAAGTCAACCCACAAAATGAGCGTACAGGCGCTGAGCCGACCGGAG
* * * * * *
13958078 GGGCAAGATGCATAAACTGGGGATCAGCCCGGTCCCTCTTTGCATGCTGCTACCGATCCGGCTGC
65 AGGCAAGATGCATAAACTGGGGATCAGCCCGATCCCCCTCTGCATGCTGCTACCGATCCCGCTAC
* * * * *
13958143 CTGTCCGATCTTAGACTAGGAATGAACTTCGTATGCTTAGACT-GAGAATGAACTCTGTATGCCT
130 CGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGA-AAAGAACTCCGTATGCCT
* *
13958207 AAGTCAACCCATGAAACGAGCGCGCGGGCGCTCAGCTTG-TCGGAGAGGCATAATACGTAAGCCG
194 AAGTCAACCCATGAAACGAGCGCGCGGGCGCTCAGC-TGACCGGAGAGGCATAATACGTAAGCCA
* * * *
13958271 AGGATCTG-TCTGGTCCCACTCTGCGTGCTACT-GATCCCGCTGCCGGTCTAGCTACCACAACCC
258 AGGATC-GACCCGATCCCACTCTGCGTGCT-CTCGATCCCGCTGCCGGTCCAGCTACCACAACCC
* *
13958334 TCGGTCTGGCTAGGGCTTAGACATG
321 TCGGTCCGCCTAGGGCTTAGACATG
* * * *
13958359 GAATGAACTCCGTATGCCTAAGCCAAACCACAAAATGAGCGTACAGGCGCTTAGCTGACCGGAGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACAGGCGCTGAGCCGACCGGAGA
* * * * * ** *
13958424 GGTAGGATGCGTAAA-TCGGGGATC-GACTCGATCCCCCTCTGCGTGCTGCTGTCGATCCCGTTA
66 GGCAAGATGCATAAACT-GGGGATCAG-CCCGATCCCCCTCTGCATGCTGCTACCGATCCCGCTA
* *
13958487 CCGGTCCGATCTTAGGCTGGGAATGAACTCCATATGCTTAGACTGGAAAAGAACTCCGTATGCCT
129 CCGGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGAAAAGAACTCCGTATGCCT
* * * *
13958552 AAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCTGACCGGAGAGGCATAATGCGTAAGTCAA
194 AAGTCAACCCATGAAACGAGCGCGCGGGCGCTCAGCTGACCGGAGAGGCATAATACGTAAGCCAA
* * * * *
13958617 GGATCGACCCGATCCCCCTCTGCGTGGTGTCGATCGCGCTGCCTGTCCAGCTACCACAACCCTCG
259 GGATCGACCCGATCCCACTCTGCGTGCTCTCGATCCCGCTGCCGGTCCAGCTACCACAACCCTCG
*
13958682 GTCCGCCTGGGGCTTAGACATG
324 GTCCGCCTAGGGCTTAGACATG
* *
13958704 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAATGA
1 GAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGA
13958742 ACGGGCGGGC
Statistics
Matches: 325, Mismatches: 51, Indels: 14
0.83 0.13 0.04
Matches are distributed among these distances:
344 6 0.02
345 315 0.97
346 4 0.01
ACGTcount: A:0.24, C:0.28, G:0.27, T:0.21
Consensus pattern (345 bp):
GAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTACAGGCGCTGAGCCGACCGGAGA
GGCAAGATGCATAAACTGGGGATCAGCCCGATCCCCCTCTGCATGCTGCTACCGATCCCGCTACC
GGTCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGAAAAGAACTCCGTATGCCTAA
GTCAACCCATGAAACGAGCGCGCGGGCGCTCAGCTGACCGGAGAGGCATAATACGTAAGCCAAGG
ATCGACCCGATCCCACTCTGCGTGCTCTCGATCCCGCTGCCGGTCCAGCTACCACAACCCTCGGT
CCGCCTAGGGCTTAGACATG
Found at i:13958540 original size:26 final size:26
Alignment explanation
Indices: 13958497--13958549 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
13958487 CCGGTCCGAT
* * *
13958497 CTTAGGCTGGGAATGAACTCCATATG
1 CTTAGACTGGAAAAGAACTCCATATG
*
13958523 CTTAGACTGGAAAAGAACTCCGTATG
1 CTTAGACTGGAAAAGAACTCCATATG
13958549 C
1 C
13958550 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGAAAAGAACTCCATATG
Found at i:13959777 original size:45 final size:44
Alignment explanation
Indices: 13959707--13959870 Score: 179
Period size: 45 Copynumber: 3.7 Consensus size: 44
13959697 CACGCTGGTG
* * * *
13959707 GATCACCATCGGCACACGTTAGGCCCTGGTGTAGGTGGTTGTCTT
1 GATCACCATCGGCACACGCTGGGCCCTGGTGTAGG-GGTTGCCTC
*
13959752 GATCATCATCGGCACACGCTGGGCCCTGGTGCT-GGCGGTTGCCTC
1 GATCACCATCGGCACACGCTGGGCCCTGGTG-TAGG-GGTTGCCTC
* ** * *
13959797 GAGCACCATCAACACACGTTGGGCCCTAGTGTAGAGGGTTGCCTC
1 GATCACCATCGGCACACGCTGGGCCCTGGTGTAG-GGGTTGCCTC
*
13959842 GATCA-CATTGGCACACGCTGGGCCCTGGT
1 GATCACCATCGGCACACGCTGGGCCCTGGT
13959871 ACAGGCTGTG
Statistics
Matches: 98, Mismatches: 18, Indels: 7
0.80 0.15 0.06
Matches are distributed among these distances:
44 20 0.20
45 76 0.78
46 2 0.02
ACGTcount: A:0.16, C:0.29, G:0.31, T:0.23
Consensus pattern (44 bp):
GATCACCATCGGCACACGCTGGGCCCTGGTGTAGGGGTTGCCTC
Found at i:13960043 original size:35 final size:35
Alignment explanation
Indices: 13959997--13960063 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
13959987 ACACCATCAG
* *
13959997 CACACGCTGGGCCCTGGTGT-GGACGGTTGCCTGAA
1 CACACACTGGGCCCTGGT-TCAGACGGTTGCCTGAA
13960032 CACACACTGGGCCCTGGTTCAGACGGTTGCCT
1 CACACACTGGGCCCTGGTTCAGACGGTTGCCT
13960064 CGATCACCAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
34 1 0.03
35 28 0.97
ACGTcount: A:0.15, C:0.31, G:0.33, T:0.21
Consensus pattern (35 bp):
CACACACTGGGCCCTGGTTCAGACGGTTGCCTGAA
Found at i:13960428 original size:45 final size:45
Alignment explanation
Indices: 13960379--13960626 Score: 171
Period size: 45 Copynumber: 5.5 Consensus size: 45
13960369 TTGCCTCCAC
* * * *
13960379 CACCATTGGCACATGTTGGGCCCTGGTGTAGAG-GGTTCCCTCGAT
1 CACCATCGGCACACGCTGGGCCCTAGTGTAG-GCGGTTCCCTCGAT
* *
13960424 CACCATCGGCACACGCTGGGCCCTAGTGTTGGCGGTTGCCTCGAT
1 CACCATCGGCACACGCTGGGCCCTAGTGTAGGCGGTTCCCTCGAT
* * * * * ** *
13960469 CACCATCGACAAACACT-GGCCTTGGTACAGGCGGTTGCCTCGAGT
1 CACCATCGGCACACGCTGGGCCCTAGTGTAGGCGGTTCCCTCGA-T
* * * * ** *
13960514 -ATCATCGACACATGCTGGGCCCTAGTGCT-GGCGATTGTCTCTAT
1 CACCATCGGCACACGCTGGGCCCTAGTG-TAGGCGGTTCCCTCGAT
* * * * * *
13960558 CACCATCGACAAACACTGGGCCCTAGTGTGGGCGGTTGCCTCGAG
1 CACCATCGGCACACGCTGGGCCCTAGTGTAGGCGGTTCCCTCGAT
* * *
13960603 CACTATCAGCACACGTTGGGCCCT
1 CACCATCGGCACACGCTGGGCCCT
13960627 GGTACGAGCT
Statistics
Matches: 158, Mismatches: 39, Indels: 12
0.76 0.19 0.06
Matches are distributed among these distances:
44 36 0.23
45 122 0.77
ACGTcount: A:0.18, C:0.31, G:0.28, T:0.23
Consensus pattern (45 bp):
CACCATCGGCACACGCTGGGCCCTAGTGTAGGCGGTTCCCTCGAT
Found at i:13960777 original size:25 final size:25
Alignment explanation
Indices: 13960743--13960790 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
13960733 ATCACCATCG
*
13960743 GCCCTGGTGCAGG-CGGTTACCTCGA
1 GCCCTAGTGC-GGACGGTTACCTCGA
*
13960768 GCCCTAGTGCGGACGGTTGCCTC
1 GCCCTAGTGCGGACGGTTACCTC
13960791 AAGCACCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 2 0.10
25 18 0.90
ACGTcount: A:0.10, C:0.33, G:0.35, T:0.21
Consensus pattern (25 bp):
GCCCTAGTGCGGACGGTTACCTCGA
Found at i:13961106 original size:44 final size:45
Alignment explanation
Indices: 13961009--13961115 Score: 119
Period size: 44 Copynumber: 2.4 Consensus size: 45
13960999 AGTGTAGGCC
* * * *
13961009 GTTGCCTCATGCACCATCGACAGAAGATGGCCCCTGGTGCGGGCG
1 GTTGCCTCGTACACCATCAACAGAAGATGGCCCCTGGTGCGAGCG
* * * *
13961054 GTTACCTCGTACACCATCAACAGAAGTTGG-CCTTGGTGCGAGTG
1 GTTGCCTCGTACACCATCAACAGAAGATGGCCCCTGGTGCGAGCG
13961098 GTTGCCTCG-ATCACCATC
1 GTTGCCTCGTA-CACCATC
13961116 GGCACACTCT
Statistics
Matches: 52, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
43 1 0.02
44 26 0.50
45 25 0.48
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (45 bp):
GTTGCCTCGTACACCATCAACAGAAGATGGCCCCTGGTGCGAGCG
Found at i:13961129 original size:134 final size:136
Alignment explanation
Indices: 13960884--13961132 Score: 299
Period size: 134 Copynumber: 1.8 Consensus size: 136
13960874 TTGCCTCGAC
** * * ** * *
13960884 CACCATCGGTAGAAGATGGCACCCTGGTGCGAGCGGTTACGTCAAACACCGTCATTATATGTTGA
1 CACCATCGACAGAAGATGGCACCCTGGTGCGAGCGGTTACCTCAAACACCATCAACAGAAGTTGA
*
13960949 ACCTTGGTGCGCACGGTTGCCTCGAACAACATCGACACATGTTGGGCCCTAGTGTAGGCCGTTGC
66 ACCTTGGTGCGCACGGTTGCCTCGAACAACATCGACACATGCTGGGCCCTAGTGTAGGCCGTTGC
13961014 CTCATG
131 CTCATG
* **
13961020 CACCATCGACAGAAGATGGC-CCCTGGTGCGGGCGGTTACCTCGTACACCATCAACAGAAGTTG-
1 CACCATCGACAGAAGATGGCACCCTGGTGCGAGCGGTTACCTCAAACACCATCAACAGAAGTTGA
* * * * *
13961083 GCCTTGGTGCG-AGTGGTTGCCTCGATCACCATCGGCACACT-CTGGGCCCT
66 ACCTTGGTGCGCA-CGGTTGCCTCGAACAACATCGACACA-TGCTGGGCCCT
13961133 GTTGCGAGCG
Statistics
Matches: 94, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
133 1 0.01
134 40 0.43
135 35 0.37
136 18 0.19
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.22
Consensus pattern (136 bp):
CACCATCGACAGAAGATGGCACCCTGGTGCGAGCGGTTACCTCAAACACCATCAACAGAAGTTGA
ACCTTGGTGCGCACGGTTGCCTCGAACAACATCGACACATGCTGGGCCCTAGTGTAGGCCGTTGC
CTCATG
Found at i:13961731 original size:45 final size:45
Alignment explanation
Indices: 13960768--13961745 Score: 561
Period size: 45 Copynumber: 21.8 Consensus size: 45
13960758 GTTACCTCGA
* * * * * *
13960768 GCCCTAGTGCGGACGGTTGCCTCAAGCACCATCAGCACATGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * * * * *
13960813 GCCCTGATGCGAGAGGTTGCCTCGAGCACCATCGGCACAAGC-CG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * *** * * * * *
13960857 ACCCTTGGTGTGGGATCTTGCCTCGACCACCATCGGTAGAAGATGG
1 GCCC-TGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * * * * * * *** * * * *
13960903 CACCCTGGTGCGAGCGGTTACGTCAAACACCGTCATTATATGTTGA
1 -GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * ** * * * * *
13960949 ACCTTGGTGCGCACGGTTGCCTCGAACAACATCGACACATGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* ** * * * * *
13960994 GCCCTAGTGTAGGCCGTTGCCTC-ATGCACCATCGACAGAAGATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAT-CACCATCGGCACACGCTGG
* * ** * * *
13961039 CCCCTGGTGCGGGCGGTTACCTCG-TACACCATCAACAGAAG-TTG
1 GCCCTGGTGCGGGCGGTTGCCTCGAT-CACCATCGGCACACGCTGG
* * * *
13961083 GCCTTGGTGCGAGTGGTTGCCTCGATCACCATCGGCACACTCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * * * * *
13961128 GCCCTGTTGCGAGCGGTTGCCTTGATCACTATCGGCACAGGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * * * *
13961173 GCCATGGTGCGGGCGGTTACCTCAAACACCATCGGCACATGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * *
13961218 GCCCTGGTGTGGGCGGTTACCTTGATCACCATCGGCACACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* **** * *
13961263 GTCCTGGTATAAGTGGTTGCCTCAATCACCATCGGCACACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * * * * **
13961308 GCCCTGCAT--GAGCGGTTGCCTCAATCACCATCGACACAAGC-CA
1 GCCCTG-GTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
** * **
13961351 GCCCTGGGTGCGGGCCATTGCCTCGATCACCATTGGCACGTGCT-G
1 GCCCT-GGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * * *** * * * *
13961396 GCCCTTGGTGCAGGTGGTTGCCTCGACCACCATCAATAGAAGATTG
1 GCCC-TGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * ** * *
13961442 GCCCTAGTGTGAACGGTTGCCTCGAACACCATCGGCACATGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * * * *
13961487 GCCCTAGTACGGGTGGTTGCCTCGATCACCATCAGCACATGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * * * *
13961532 GCTCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGC-CG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
** * * *
13961576 GCCCTTGGTGCGGGCTCTTGCCTCGACCACCATTGGCATACGCTGG
1 GCCC-TGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * *
13961622 GCCCTGTTACGGGCAGTTGCCTCGATCACCATCGGCACACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * *
13961667 GCCCTAGTGCGGGCAGTTGCCTCGATCACCATCGGCACACACTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
* * * * * *
13961712 GCCTTGGTACAGGCGGTTGCTTCAAGCACCATCG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCG
13961746 ACATAAGCCT
Statistics
Matches: 714, Mismatches: 203, Indels: 32
0.75 0.21 0.03
Matches are distributed among these distances:
43 6 0.01
44 69 0.10
45 597 0.84
46 38 0.05
47 4 0.01
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.21
Consensus pattern (45 bp):
GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGGCACACGCTGG
Found at i:13961913 original size:10 final size:10
Alignment explanation
Indices: 13961898--13961924 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
13961888 CGGGCAGTCG
13961898 CATCGACCAC
1 CATCGACCAC
13961908 CATCGACCAC
1 CATCGACCAC
13961918 CATCGAC
1 CATCGAC
13961925 ACGCGCTGGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.30, C:0.48, G:0.11, T:0.11
Consensus pattern (10 bp):
CATCGACCAC
Found at i:13969427 original size:26 final size:26
Alignment explanation
Indices: 13969398--13969450 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
13969388 CCTGTCCGAT
*
13969398 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGAAATGAACTCT-GTATG
13969424 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCTGTATG
13969450 C
1 C
13969451 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCTGTATG
Found at i:13969980 original size:302 final size:302
Alignment explanation
Indices: 13969426--13969997 Score: 700
Period size: 302 Copynumber: 1.9 Consensus size: 302
13969416 TTCGTATGCT
* * * ** * *
13969426 TAGACTGGAAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCTCAATCG
1 TAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAACCA
* * * * *
13969491 GCCGGAGAGGCATAATGCGTAAGTCGAGGATCTGTCTGGTCCCCCTTTGCATGCTACCAATCCCG
66 GCCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCTTTACATGCTACCAATCCCG
* * *
13969556 TTGCCGGTCCAACTACCACAACCCTCGGTCCGACTGGGGCTTAGACATGGAATGAAATCCCTATG
131 CTGCCGGTCCAACTACCACAACCCTCCGTCCGACTGGGGCTTAGACATGAAATGAAATCCCTATG
* * *
13969621 CCTAAGCCAACCCACAAAACGAGCATACGGGCACTCAGCCGACCAAAAAGGCAGGATG-AGTAAG
196 CCTAAGCCAACCCACAAAACGAGCAGACGAGCACTCAGCCGACCAAAAAGACAGGATGCA-TAAG
13969685 TCGTGGATCGACCCGATCCCCCTCTATGTGCTGCTACCGATTC
260 TCGTGGATCGACCCGATCCCCCTCTATGTGCTGCTACCGATTC
* * * *
13969728 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTGAGCCA
1 TAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAACCA
* * ** *
13969793 GCCGGAGAGGCATAATGCGTAAGCCGGGGATCAGCCCGGTCCCCCTTTACATGTTGTCGATCCCG
66 GCCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCTTTACATGCTACCAATCCCG
* * * * * * * *
13969858 CTGTCGGTCCAGCTGCCACAACCCTCCGT-CTACCTGGGGGTTGGACATGAAATGAACTCCTTAT
131 CTGCCGGTCCAACTACCACAACCCTCCGTCCGA-CTGGGGCTTAGACATGAAATGAAATCCCTAT
* * * * * * * * *
13969922 GCTTAAGTCAACCCACGAAACGAGCGGGCGAGCACT-ACGTCGGCCAGAGAGACAGGATGCATAA
195 GCCTAAGCCAACCCACAAAACGAGCAGACGAGCACTCA-GCCGACCAAAAAGACAGGATGCATAA
13969986 GTCGTGGATCGA
259 GTCGTGGATCGA
13969998 TCAGATAGTA
Statistics
Matches: 223, Mismatches: 44, Indels: 6
0.82 0.16 0.02
Matches are distributed among these distances:
301 3 0.01
302 219 0.98
303 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (302 bp):
TAGACTGGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAACCA
GCCGGAGAGGCATAATGCGTAAGCCGAGGATCAGCCCGGTCCCCCTTTACATGCTACCAATCCCG
CTGCCGGTCCAACTACCACAACCCTCCGTCCGACTGGGGCTTAGACATGAAATGAAATCCCTATG
CCTAAGCCAACCCACAAAACGAGCAGACGAGCACTCAGCCGACCAAAAAGACAGGATGCATAAGT
CGTGGATCGACCCGATCCCCCTCTATGTGCTGCTACCGATTC
Found at i:13970498 original size:45 final size:45
Alignment explanation
Indices: 13970413--13970771 Score: 308
Period size: 45 Copynumber: 8.0 Consensus size: 45
13970403 CTCGAGCCTA
* * * * *
13970413 GTGTGGGTGATTACCTCGAGCACCATCGGCACATGTTGGGCCCTG
1 GTGTGGGTGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTG
* * * *
13970458 GTGTGGGTGGTTGCCTCGATCACTATCGACACACGCTGGGCCCCG
1 GTGTGGGTGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTG
* * * * *
13970503 GTGCGGGCGGTTGCCTCGAACACCATCGGTAAACACTGGGCCCTG
1 GTGTGGGTGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTG
* * **
13970548 GTGTTGGTGGTTGCCTCGATCACCATCGGCACATACTGGGCCCTG
1 GTGTGGGTGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTG
* ** *
13970593 GTATGGGCAGTTGCCTCGAACACCATCGGCACAAGCT-GGCCCTTG
1 GTGTGGGTGGTTGCCTCGAACACCATCGGCACACGCTGGGCCC-TG
** * * * * * *
13970638 GTACGAGCT-CTTACCTCGACCACCATTGACACACGCTGGGCCCTG
1 GTGTG-GGTGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTG
* * * * * * *
13970683 GTGAGGGCGATTCCCTCGAACACCATCAGCAGACGTTGGGCCCTG
1 GTGTGGGTGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTG
* * * * *
13970728 TTGGGGGTGATTGCCTCGATCACCATCGGCACATGCTGGGCCCT
1 GTGTGGGTGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCT
13970772 AGTACGAGCG
Statistics
Matches: 249, Mismatches: 61, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
44 6 0.02
45 237 0.95
46 6 0.02
ACGTcount: A:0.17, C:0.31, G:0.31, T:0.22
Consensus pattern (45 bp):
GTGTGGGTGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTG
Found at i:13970744 original size:180 final size:180
Alignment explanation
Indices: 13970471--13970846 Score: 473
Period size: 180 Copynumber: 2.1 Consensus size: 180
13970461 TGGGTGGTTG
* * * * * * *
13970471 CCTCGATCACTATCGACACACGCTGGGCCCCGGTGCGGGCGGTTGCCTCGAACACCATCGGTAAA
1 CCTCGACCACCATCGACACACGCTGGGCCCCGGTGAGGGCGATTCCCTCGAACACCATCAGCAAA
** * * * *
13970536 CACTGGGCCCTGGTGTTGGTGGTTGCCTCGATCACCATCGGCACATACTGGGCCCTGGTATGGGC
66 CACTGGGCCCTGGTGGGGGTGATTGCCTCGATCACCATCGGCACATACTGGGCCCTAGTACGAGC
* * * *
13970601 AGTTGCCTCGAACACCATCGGCACAAGCTGGCCCTTGGTACGAGCTCTTA
131 AGTTGCCTCGAACACCATCGACAAAAGCCGGCACTTGGTACGAGCTCTTA
* * *
13970651 CCTCGACCACCATTGACACACGCTGGGCCCTGGTGAGGGCGATTCCCTCGAACACCATCAGCAGA
1 CCTCGACCACCATCGACACACGCTGGGCCCCGGTGAGGGCGATTCCCTCGAACACCATCAGCAAA
** * *
13970716 CGTTGGGCCCTGTTGGGGGTGATTGCCTCGATCACCATCGGCACATGCTGGGCCCTAGTACGAGC
66 CACTGGGCCCTGGTGGGGGTGATTGCCTCGATCACCATCGGCACATACTGGGCCCTAGTACGAGC
* * * * * * *
13970781 GGTTGCTTTGAGCACCATCGATAAAAGCCGGCACTTGGTGCGAGCTCTTG
131 AGTTGCCTCGAACACCATCGACAAAAGCCGGCACTTGGTACGAGCTCTTA
13970831 CCTCGACCACCATCGA
1 CCTCGACCACCATCGA
13970847 TAGAAGATGG
Statistics
Matches: 164, Mismatches: 32, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
180 164 1.00
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (180 bp):
CCTCGACCACCATCGACACACGCTGGGCCCCGGTGAGGGCGATTCCCTCGAACACCATCAGCAAA
CACTGGGCCCTGGTGGGGGTGATTGCCTCGATCACCATCGGCACATACTGGGCCCTAGTACGAGC
AGTTGCCTCGAACACCATCGACAAAAGCCGGCACTTGGTACGAGCTCTTA
Found at i:13970797 original size:90 final size:90
Alignment explanation
Indices: 13970426--13970800 Score: 351
Period size: 90 Copynumber: 4.2 Consensus size: 90
13970416 TGGGTGATTA
* * * * *
13970426 CCTCGAGCACCATCGGCACATGTTGGGCCCTGGTGTGGGTGGTTGCCTCGATCACTATCGACACA
1 CCTCGAACACCATCGGCACACGCTGGGCCCTGGTGGGGGTGGTTGCCTCGATCACCATCGACACA
* *
13970491 CGCTGGGCCCCGGTGCGGGCGGTTG
66 CGCTGGGCCCTGGTACGGGCGGTTG
* * * ** *
13970516 CCTCGAACACCATCGGTAAACACTGGGCCCTGGTGTTGGTGGTTGCCTCGATCACCATCGGCACA
1 CCTCGAACACCATCGGCACACGCTGGGCCCTGGTGGGGGTGGTTGCCTCGATCACCATCGACACA
** * *
13970581 TACTGGGCCCTGGTATGGGCAGTTG
66 CGCTGGGCCCTGGTACGGGCGGTTG
* * * * * * * *
13970606 CCTCGAACACCATCGGCACAAGCT-GGCCCTTGGTACGAGCT-CTTACCTCGACCACCATTGACA
1 CCTCGAACACCATCGGCACACGCTGGGCCC-TGGT-GGGGGTGGTTGCCTCGATCACCATCGACA
* *
13970669 CACGCTGGGCCCTGGTGA-GGGCGATTC
64 CACGCTGGGCCCTGGT-ACGGGCGGTTG
* * * * * *
13970696 CCTCGAACACCATCAGCAGACGTTGGGCCCTGTTGGGGGTGATTGCCTCGATCACCATCGGCACA
1 CCTCGAACACCATCGGCACACGCTGGGCCCTGGTGGGGGTGGTTGCCTCGATCACCATCGACACA
* * *
13970761 TGCTGGGCCCTAGTACGAGCGGTTG
66 CGCTGGGCCCTGGTACGGGCGGTTG
* * *
13970786 CTTTGAGCACCATCG
1 CCTCGAACACCATCG
13970801 ATAAAAGCCG
Statistics
Matches: 224, Mismatches: 55, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
89 9 0.04
90 207 0.92
91 8 0.04
ACGTcount: A:0.17, C:0.31, G:0.30, T:0.21
Consensus pattern (90 bp):
CCTCGAACACCATCGGCACACGCTGGGCCCTGGTGGGGGTGGTTGCCTCGATCACCATCGACACA
CGCTGGGCCCTGGTACGGGCGGTTG
Found at i:13970797 original size:135 final size:134
Alignment explanation
Indices: 13970421--13970801 Score: 361
Period size: 135 Copynumber: 2.8 Consensus size: 134
13970411 TAGTGTGGGT
* * * *
13970421 GATTACCTCGAGCACCATCGGCACATGTTGGGCCCTGGTGTGGGTGGTTGCCTCGATCACTATCG
1 GATTACCTCGAACACCATCGGCACATGTTGGGCCCTGTTGGGGGT-GTTGCCTCGATCACCATCG
* * * * * **
13970486 ACACACGCTGGGCCCCGGTGCGGGCGGTTGCCTCGAACACCATCGGTAAACACTGGGCCCTGGTG
65 GCACAAGCTGGGCCCTGGTACGAGCGGTTGCCTCGAACACCATCGACAAACACTGGGCCCTGGTG
** *
13970551 TTGGT
130 AGGGC
* * * ** ** *
13970556 GGTTGCCTCGATCACCATCGGCACATACTGGGCCCTGGTAT-GGGCAGTTGCCTCGAACACCATC
1 GATTACCTCGAACACCATCGGCACATGTTGGGCCCT-GT-TGGGGGTGTTGCCTCGATCACCATC
** * * * * *
13970620 GGCACAAGCT-GGCCCTTGGTACGAGCTCTTACCTCGACCACCATTGACACACGCTGGGCCCTGG
64 GGCACAAGCTGGGCCC-TGGTACGAGCGGTTGCCTCGAACACCATCGACAAACACTGGGCCCTGG
13970684 TGAGGGC
128 TGAGGGC
* * * *
13970691 GATTCCCTCGAACACCATCAGCAGACGTTGGGCCCTGTTGGGGGTGATTGCCTCGATCACCATCG
1 GATTACCTCGAACACCATCGGCACATGTTGGGCCCTGTTGGGGGTG-TTGCCTCGATCACCATCG
* * * * *
13970756 GCACATGCTGGGCCCTAGTACGAGCGGTTGCTTTGAGCACCATCGA
65 GCACAAGCTGGGCCCTGGTACGAGCGGTTGCCTCGAACACCATCGA
13970802 TAAAAGCCGG
Statistics
Matches: 192, Mismatches: 48, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
133 1 0.01
134 11 0.06
135 171 0.89
136 8 0.04
137 1 0.01
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.22
Consensus pattern (134 bp):
GATTACCTCGAACACCATCGGCACATGTTGGGCCCTGTTGGGGGTGTTGCCTCGATCACCATCGG
CACAAGCTGGGCCCTGGTACGAGCGGTTGCCTCGAACACCATCGACAAACACTGGGCCCTGGTGA
GGGC
Found at i:13990832 original size:26 final size:26
Alignment explanation
Indices: 13990794--13990846 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13990784 CCTGTCTGAT
*
13990794 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
13990820 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
13990846 C
1 C
13990847 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:13991168 original size:26 final size:26
Alignment explanation
Indices: 13991139--13991191 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
13991129 TCGATCTGAT
* *
13991139 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13991165 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
13991191 C
1 C
13991192 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:13992266 original size:45 final size:45
Alignment explanation
Indices: 13992063--13992271 Score: 181
Period size: 45 Copynumber: 4.6 Consensus size: 45
13992053 GGTACGGTAC
* * * ** *
13992063 TTGCCTCG-ACTACTATCAGCACAAGCTGGGCCCTGGTGCAAGCGG
1 TTGCCTCGAAC-ACCATCGGCACACGCTGGGCCCTGGTGCGGGCAG
* * *
13992108 TTGCCTCGATCACCATC-G-ACACGCGTTGGCCCAGGGTGCGGGCAG
1 TTGCCTCGAACACCATCGGCACACGC-TGGGCCC-TGGTGCGGGCAG
* * * * * * * *
13992153 TTGCCTCGACCACCATTGGCAGAAGATGGGCTCTGGTACAGGCAG
1 TTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGGCAG
* *
13992198 TTGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTACGGGCAG
1 TTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGGCAG
* *
13992243 TTGCCTCGAACGCCATCAGCACACGCTGG
1 TTGCCTCGAACACCATCGGCACACGCTGG
13992272 TCGATCACCA
Statistics
Matches: 131, Mismatches: 28, Indels: 10
0.78 0.17 0.06
Matches are distributed among these distances:
43 5 0.04
44 7 0.05
45 109 0.83
46 7 0.05
47 3 0.02
ACGTcount: A:0.19, C:0.33, G:0.30, T:0.19
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGGCAG
Found at i:13992363 original size:45 final size:45
Alignment explanation
Indices: 13992284--13992464 Score: 265
Period size: 45 Copynumber: 4.0 Consensus size: 45
13992274 GATCACCATC
* * *
13992284 GGCCCTGGTACGGGTGGTTGCCTCGATCACCATCGGCACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACGCTG
** *
13992329 GG-CCTCGGTGTAGGCGGTTGCCTCGAACACCATCGGCACACGTTG
1 GGCCCT-GGTGCGGGCGGTTGCCTCGAACACCATCGGCACACGCTG
* **
13992374 GGCCCTGGTGGGGGTAGTTGCCTCGAACACCATCGGCACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACGCTG
13992419 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACGCTG
13992464 G
1 G
13992465 TGTCATGGGC
Statistics
Matches: 120, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
44 3 0.03
45 114 0.95
46 3 0.03
ACGTcount: A:0.14, C:0.33, G:0.35, T:0.18
Consensus pattern (45 bp):
GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACACGCTG
Found at i:13992420 original size:193 final size:193
Alignment explanation
Indices: 13992106--13992465 Score: 504
Period size: 193 Copynumber: 1.9 Consensus size: 193
13992096 TGGTGCAAGC
* * * * * *
13992106 GGTTGCCTCGATCACCATCGACACGCGTTGGCCCAGGGTGCGGGCAGTTGCCTCGACCACCATTG
1 GGTTGCCTCGATCACCATCGACACACGCTGGCCCACGGTGCAGGCAGTTGCCTCGAACACCATCG
* * *
13992171 GCAGAAGATGGGCTCTGGTACAGGCAGTTGCCTCGATCACCATCGGCACACGCTGGGCCCTGGTA
66 GCACAAGATGGGCCCTGGTACAGGCAGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTA
*
13992236 CGGGCAGTTGCCTCGAACGCCATCAGCACACGCTGGTCGATCACCATCGGCCCTGGTACGGGT
131 CGGGCAGTTGCCTCGAACACCATCAGCACACGCTGGTCGATCACCATCGGCCCTGGTACGGGT
* * * * *
13992299 GGTTGCCTCGATCACCATCGGCACACGCTGGGCCTCGGTGTAGGCGGTTGCCTCGAACACCATCG
1 GGTTGCCTCGATCACCATCGACACACGCTGGCCCACGGTGCAGGCAGTTGCCTCGAACACCATCG
* * *** * *
13992364 GCACACGTTGGGCCCTGGTGGGGGTAGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTG
66 GCACAAGATGGGCCCTGGTACAGGCAGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTA
* *
13992429 CGGGCGGTTGCCTCGAACACCATCGGCACACGCTGGT
131 CGGGCAGTTGCCTCGAACACCATCAGCACACGCTGGT
13992466 GTCATGGGCT
Statistics
Matches: 143, Mismatches: 24, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
193 143 1.00
ACGTcount: A:0.16, C:0.33, G:0.32, T:0.19
Consensus pattern (193 bp):
GGTTGCCTCGATCACCATCGACACACGCTGGCCCACGGTGCAGGCAGTTGCCTCGAACACCATCG
GCACAAGATGGGCCCTGGTACAGGCAGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTA
CGGGCAGTTGCCTCGAACACCATCAGCACACGCTGGTCGATCACCATCGGCCCTGGTACGGGT
Found at i:13993152 original size:45 final size:45
Alignment explanation
Indices: 13993089--13995743 Score: 1352
Period size: 45 Copynumber: 58.9 Consensus size: 45
13993079 CGTGACACTA
* * * * *
13993089 GGCCCTGGTGTGGACGGTTGCCTCGACCACCATCGGCAGAAGATG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* ** ** * ** * *
13993134 GCCCCTGGTGCGGGCGGTTATCTTTACCACCATCGATAGAAGATG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * ** * * *
13993179 GCCCCTGGTGCGGGTGGTTGTGTCAAACACCATCGACACATGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * ** * * ** ** *
13993224 GGTCCTAGTGTAGGTGGTTACCTCGAACACCATCAACACGTGTTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * *
13993269 GGCCTTGGTGAGGGAGGTTGCCTCGAGCACCATCGGCATAAGCT-
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* ** * * * * *
13993313 GGCCCTTGGTGCGAGCTCTTGCCTCGACCACCATCAGTAAAAGAT-
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * * * * * * *
13993358 GGCCTTTAGTGCCGGCGGTTACGTTGAACACCATCGACATACGCTA
1 GGCC-CTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * * * * *
13993404 GGTCTTGGTGCGTGCGATTGCCACGAACACTATCGACACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * *
13993449 GG-CCTAGGTGCAGGCGGTTGCCTC-AAGCACCAACGACAGAAGATG
1 GGCCCT-GGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACAAGCTG
* * *
13993494 GCCCCTGGTGCGGGCGGTTGCCTCAAACACCATCGGCACACA-TTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA-AGCTG
* * * * * * *
13993539 GACCCTGGTACGAGCGATTGCCTC-AATCACCATCGACACACGTTGG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACAAGCT-G
* * * ** *
13993585 GGCCCTGGTGTGGGCGGTTGCCTTGACCACCATCACCACAAGC-C
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* *** * * * * * *
13993629 AGCCCTTGGTGCGGGCTCATGCCTTGACCACCATCGACAAAAGATC
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * * * * * *
13993675 GCCCCTAGTGCGGGCAGTTACATCAAACACCAACGGCATACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * *
13993720 AGTCCTGGTGCAGGCGGTTGTCTCGAACACCATTGGCACAAGCT-
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
** * * * *
13993764 GGCCCTTGGTGCGGGCTCTTGCCTTGACCACCATCAGCACATGCTG
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * *
13993810 GGCCCTGGGGTGGGCGATTGCCTC-AAGAACCATCGGCACATGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACAAGCTG
* * * *
13993855 GGCCCTGGTACGGGCGGTTTCCTCGAACACCATTGGCACATGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * ** * * ** ** * *
13993900 GGCCCTGGTACGAGTAGTTACGTCGAGTACCATTAGCACACGATG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
** * * *
13993945 GGCCCTGGTGCTAGCGGTTACCTCGAACACCATCGGCACACGTTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * *
13993990 GGCCCTGGTGTGAGCGGTTACCTCAAACACCATCGGCA-AA-CATTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGC--TG
* * * * *
13994035 GGCTCTGGTGCGGGTGGTTGCCTCGATCACCATTGGCACACA-TTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA-AGCTG
* * * * * *
13994080 GGCCCTAGTGCAGACGGTTGCCTC-AACCACCATCGGTAGAAGATG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACAAGCTG
* * * * * *
13994125 GCCCCTGGTGCAGGCGATTGCGC-CAAACACCATCGACACACGCTG
1 GGCCCTGGTGCGGGCGGTTGC-CTCGAACACCATCGGCACAAGCTG
* * * ** *
13994170 GGCCCTGGTGCGGGTGGTTACCTCGAACACCATCGACACGTG-TC
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * * * *
13994214 GGCCTTGCTGTGGGAGGTTGCCTCGAGCACCATTGGCATAAGCT-
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* ** * * * *
13994258 GACCCTTGGTGCGGGCTCTTGCCTCGACCACCATCGACAGAAGAT-
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* ** * * * *
13994303 GGCCTTTGGTGCAAGCAGTTGCATCGAACACCATCGGCATACGCTG
1 GGCC-CTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * *
13994349 GGCCTTGGTG-GGTGCGATTGCCTCAAACACCATCGGCACACA-CTG
1 GGCCCTGGTGCGG-GCGGTTGCCTCGAACACCATCGGCACA-AGCTG
* * * * * * * *
13994394 GGCCTTAGTGCGAGCGGTTGCCTCGAGCACCATTGACAGAAGATG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* ** * * *
13994439 GCCCCTGGTATGGGCGGTTGCCTCGAACACCATCGACAC-TGCTA
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * * * *
13994483 GGCCCTGGTACGAGTGATTACCT-TAATCACCATCAGCACACA-CTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACA-AGCTG
* * * * * *
13994528 GACCCTGGTACGGGTGGTTACCTC-AACCACCATCGCCACAAG-TC
1 GGCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACAAGCTG
* ** * * * * *
13994572 AGCCCTTGGTGCGGGCTCTTGCCTCGACCATCATAGGCAGAAGATG
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * * *
13994618 GCCCCTGGTGCGGGTGGTTGCGTCGAACACCAACAGCACACA-ATG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA-AGCTG
* * * ** *
13994663 GGCCCTGGTGCAGACGGTTGCCTCGAACACTATCAACACAAGC-C
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* ** * * * * * *
13994707 GGCCCTTGGTACGGGCTCTTACCTTGACCACTATCGACACACGCTG
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * *
13994753 GGCCCTGGGGCGGGCAGTTGCCTCGAGCACCATCGGCCCAGCACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGG--CA-CA-A-GCTG
* * * * * * *
13994803 GGCCCTGGGGTGGACGGTTACCTTGAACACCATTGGCACATGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * *
13994848 GGCCCTGGTGCGAGCGGTTACCTCCAACACCATCGGCACATGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * *
13994893 GGTCCTGGTGCGAGCGGTTGCCTC-AATCACCATAGGCACATGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACAAGCTG
* * * * *
13994938 GGCCATGGTGCGGGCGGTTGCCTCGACCACCATCGGTAGAAGATG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * * * *
13994983 GCCCCTAGTGTGGGCGGTTGTGC-CGAACCCCATCGGTACACGCTG
1 GGCCCTGGTGCGGGCGGTTG-CCTCGAACACCATCGGCACAAGCTG
* * ***
13995028 GGCCTTGGTGCGGACGGTTGCCTCGAACACCATCGGCATGTGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* *** * * *
13995073 GG-CCTGGTGTGAAAGGTTTCCTCGAGCACCATCGGCACAAGC-C
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* ** * * * * *
13995116 AGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATCAGTAGAAGATG
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * *
13995162 GCCCCTGGTGCGGGCGGTTGCAC-CGAACACCATTGGCATATGCTG
1 GGCCCTGGTGCGGGCGGTTGC-CTCGAACACCATCGGCACAAGCTG
* * * * * *
13995207 GGCCCTGGTGCGGGCGCTTACCTCGAGCACCATCGACAGAAGATG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * *
13995252 GCCCCTGGTACGGGCGGTTGCCTTGAACACCATCGACACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * *
13995297 GGCCCTGGTACGGGTGGTTGCCTC-AATCACCATCGACACAGGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACAAGCTG
* * * *** *
13995342 GGACCTGGTGCGAGCGGTTGCCTCGACCACCATTACCACAAG-TC
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * ** * * * *
13995386 GACCCTTGGTGCTGGCTTTTACCTCGACCACCATCGGCAGAAGAT-
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
** ** * * * *
13995431 GGCCCTTGGTGCAAGCGGTTGTGTCGAGCACCATTGGCACACGATG
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * *
13995477 GGCCCTGGTACGGGCGATTGCCTC-AATCACCATCGGTACAAGC-C
1 GGCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACAAGCTG
* ** * * *
13995521 AGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATCCGCACACGCTG
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * *
13995567 GGCTCTGGTGCAGGCGGTTGCCTCGACCACCATCGGCACACA-CTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA-AGCTG
* * * *
13995612 GGCCATGGTGTGGGCGGTTACCTCGAACACCATCGGCACACGCTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* ** * * * *
13995657 GGCCTTACTTCGGGCGGTTGCCTCGAGCACCATCGGCACACGTTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
* * * * * * *
13995702 GGCCTTGGTACGAGTGGTTGCTTCGAGCACCATCGGTACAAG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAG
13995744 TCGACCCTTA
Statistics
Matches: 1965, Mismatches: 573, Indels: 144
0.73 0.21 0.05
Matches are distributed among these distances:
43 3 0.00
44 146 0.07
45 1685 0.86
46 88 0.04
47 6 0.00
48 4 0.00
50 33 0.02
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (45 bp):
GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTG
Found at i:13995158 original size:179 final size:180
Alignment explanation
Indices: 13994827--13995241 Score: 501
Period size: 179 Copynumber: 2.3 Consensus size: 180
13994817 CGGTTACCTT
* * *
13994827 GAACACCATTGGCACATGCTGGGCCCTGGTGC-GAGCGGTTACCTCCAACACCATCGGCACATGC
1 GAACACCATCGGCACACGCTGGGCCCTGGTGCGGA-CGGTTACCTCGAACACCATCGGCACATGC
** * * ** * *
13994891 TGGGTCCTGGTGCGAGCGGTTGCCTCAATCACCATAGGCACATGCTGGGCCATGGTGCGGGCGGT
65 TGGGTCCTGGTGCGAAAGGTTGCCTCAAGCACCATAGGCACAAGCCAGCCCATGGTGCGGGCGCT
* * **
13994956 TGCCTCGACCACCATCGGTAGAAGATGGCCCCTAGTGTGGGCGGTTGTGCC
130 TGCCTCGACCACCATCAGTAGAAGATGGCCCCTAGTGCGGGCGGTTGCACC
* * * * **
13995007 GAACCCCATCGGTACACGCTGGGCCTTGGTGCGGACGGTTGCCTCGAACACCATCGGCATGTGCT
1 GAACACCATCGGCACACGCTGGGCCCTGGTGCGGACGGTTACCTCGAACACCATCGGCACATGCT
* * * * * *
13995072 GGG-CCTGGTGTGAAAGGTTTCCTCGAGCACCATCGGCACAAGCCAGCCCTTGGTGCGGGCTCTT
66 GGGTCCTGGTGCGAAAGGTTGCCTCAAGCACCATAGGCACAAGCCAGCCCATGGTGCGGGCGCTT
*
13995136 GCCTCGACCACCATCAGTAGAAGATGGCCCCTGGTGCGGGCGGTTGCACC
131 GCCTCGACCACCATCAGTAGAAGATGGCCCCTAGTGCGGGCGGTTGCACC
* * * * * *
13995186 GAACACCATTGGCATATGCTGGGCCCTGGTGCGGGCGCTTACCTCGAGCACCATCG
1 GAACACCATCGGCACACGCTGGGCCCTGGTGCGGACGGTTACCTCGAACACCATCG
13995242 ACAGAAGATG
Statistics
Matches: 196, Mismatches: 38, Indels: 3
0.83 0.16 0.01
Matches are distributed among these distances:
179 138 0.70
180 56 0.29
181 2 0.01
ACGTcount: A:0.17, C:0.31, G:0.32, T:0.20
Consensus pattern (180 bp):
GAACACCATCGGCACACGCTGGGCCCTGGTGCGGACGGTTACCTCGAACACCATCGGCACATGCT
GGGTCCTGGTGCGAAAGGTTGCCTCAAGCACCATAGGCACAAGCCAGCCCATGGTGCGGGCGCTT
GCCTCGACCACCATCAGTAGAAGATGGCCCCTAGTGCGGGCGGTTGCACC
Found at i:13995753 original size:90 final size:90
Alignment explanation
Indices: 13995579--13995784 Score: 207
Period size: 90 Copynumber: 2.3 Consensus size: 90
13995569 CTCTGGTGCA
** *
13995579 GGCGGTTGCCTCGACCACCATCGGCACACACTGGGCCATGGTGTGGGCGGTTACCTCGAACACCA
1 GGCGGTTGCCTCGACCACCATCGGCACACACTGGGCCATGGTACGAGCGGTTACCTCGAACACCA
* **
13995644 TCGGCACACGCTGGGCCTTACTTCG
66 TCGGCACAAGCTGACCCTTACTTCG
* ** * * * * *
13995669 GGCGGTTGCCTCGAGCACCATCGGCACACGTTGGGCCTTGGTACGAGTGGTTGCTTCGAGCACCA
1 GGCGGTTGCCTCGACCACCATCGGCACACACTGGGCCATGGTACGAGCGGTTACCTCGAACACCA
* * * *
13995734 TCGGTACAAG-TCGACCCTTAGTGCA
66 TCGGCACAAGCT-GACCCTTACTTCG
** *
13995759 GGCTCTTGCCTCGACCACCATTGGCA
1 GGCGGTTGCCTCGACCACCATCGGCA
13995785 GAAGATGGCA
Statistics
Matches: 93, Mismatches: 22, Indels: 2
0.79 0.19 0.02
Matches are distributed among these distances:
89 1 0.01
90 92 0.99
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.21
Consensus pattern (90 bp):
GGCGGTTGCCTCGACCACCATCGGCACACACTGGGCCATGGTACGAGCGGTTACCTCGAACACCA
TCGGCACAAGCTGACCCTTACTTCG
Found at i:13995881 original size:77 final size:77
Alignment explanation
Indices: 13995743--13995886 Score: 200
Period size: 77 Copynumber: 1.9 Consensus size: 77
13995733 ATCGGTACAA
* *
13995743 GTCGACCCTTAGTGCAGGCTCTTGCCTCGACCACCATTGGCAGAAGATGGCACCTAGGTCGAACA
1 GTCGACCCTTAGTGCAGGCTCTTACCTCGACCACCATCGGCAGAAGATGGCACCTAGGTCGAACA
13995808 CCTTCGACGCAC
66 CCTTCGACGCAC
* * * * * *
13995820 GTCGGCCCTTGGTGCGGGCTCTTACCTCGACCAGCATCGGTAGAAGATGGCCCCT-GCGTCGAAC
1 GTCGACCCTTAGTGCAGGCTCTTACCTCGACCACCATCGGCAGAAGATGGCACCTAG-GTCGAAC
13995884 ACC
65 ACC
13995887 ATCAGCACAC
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
76 1 0.02
77 57 0.98
ACGTcount: A:0.19, C:0.34, G:0.27, T:0.19
Consensus pattern (77 bp):
GTCGACCCTTAGTGCAGGCTCTTACCTCGACCACCATCGGCAGAAGATGGCACCTAGGTCGAACA
CCTTCGACGCAC
Found at i:13995907 original size:77 final size:76
Alignment explanation
Indices: 13995748--13995910 Score: 179
Period size: 77 Copynumber: 2.1 Consensus size: 76
13995738 TACAAGTCGA
* * * *
13995748 CCCTTAGTGCAGGCTCTTGCCTCGACCACCATTGGCAGAAGATGGCACCTAGGTCGAACACCTTC
1 CCCTTGGTGCAGGCTCTTACCTCGACCACCATCGGCAGAAGATGGCACCTAGGTCGAACACCATC
*
13995813 GACGCACGTCGG
66 GACACACG-CGG
* * * *
13995825 CCCTTGGTGCGGGCTCTTACCTCGACCAGCATCGGTAGAAGATGGCCCCT-GCGTCGAACACCAT
1 CCCTTGGTGCAGGCTCTTACCTCGACCACCATCGGCAGAAGATGGCACCTAG-GTCGAACACCAT
13995889 CAGCACACAC-CGAG
65 C-G-ACACACGCG-G
13995903 -CCTTGGTG
1 CCCTTGGTG
13995911 TTGGCACATG
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
76 1 0.01
77 65 0.89
78 2 0.03
79 5 0.07
ACGTcount: A:0.20, C:0.34, G:0.26, T:0.19
Consensus pattern (76 bp):
CCCTTGGTGCAGGCTCTTACCTCGACCACCATCGGCAGAAGATGGCACCTAGGTCGAACACCATC
GACACACGCGG
Found at i:14001240 original size:26 final size:26
Alignment explanation
Indices: 14001204--14001256 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14001194 CTTGTCCAAT
14001204 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14001230 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
14001256 C
1 C
14001257 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:14001695 original size:334 final size:332
Alignment explanation
Indices: 14000922--14001697 Score: 871
Period size: 334 Copynumber: 2.3 Consensus size: 332
14000912 GCAATACGTT
* * * * *
14000922 TGCCTAAGTCAACCCATGAAATGAGTGGGCGGGCACTCAGCCAGTCGGAGAGCCAGAATACGCAA
1 TGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAGCCAGTCGGAGAGGCATAATGCGCAA
* * * * *** *
14000987 ACCAAGGATCAGCTCGATCCCCCTCTGCGTGCTGTCGATCCCGCTGCCGGTCCCTCGGTCTGGCT
66 GCCAGGGATCAGCTCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTACCCAACCCTCGATCTGGCT
* * ** * * **
14001052 GGGGCTTAGACCGAAAATGAATCCCGTGTGCCTAAGTCAACCCTCGAAACGAGCGTGCGGGCACT
131 AGGGCTTAGACCGAAAATGAATCCCGTATGCCTAAACCAACCCACAAAACGAGCGTGCGCACACT
* * * * * * **
14001117 GAGTCGCCCGGAGGGGCAGGATGTGCAAGCCGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCTA
196 CAGCCGACAGAAGAGGCAGGATACGCAAGCCGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCTA
* * *
14001182 CCGATTCGATTGCTTGTCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAA
261 CCGATCCGATTGCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
14001247 CTTCGTA
326 CTTCGTA
* * ** * * *
14001254 TGCCTAAGTCAACCCATGAAACGAGCGTGCAGGTGCTCAGCCGGTCGGAGAGGTATAATGTGCAA
1 TGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAGCCAGTCGGAGAGGCATAATGCGCAA
* * * * * *
14001319 GTCGGGGATCCGCTCGGTCCCCCTCTGTGTGCT-ACTGATCCCGCTACCACAACCCTTGATCTGG
66 GCCAGGGATCAGCTCGGTCCCCCTCTGCGTGCTGTC-GATCCCGCTACC-CAACCCTCGATCTGG
* * * *
14001383 CTAGGGCTTAGACATG-GAATGAA-CTTCGTATGCCTAAACCAACCCACAAAATGAGCGTGCGCA
129 CTAGGGCTTAGAC-CGAAAATGAATC-CCGTATGCCTAAACCAACCCACAAAACGAGCGTGCGCA
* * * *
14001446 CGCTCAGCCGACAGAAGAGGTAGGATACGCAAGCCGGGGATTGGC-CTGGTCCCCCTCTGCGTGC
192 CACTCAGCCGACAGAAGAGGCAGGATACGCAAGCCGGGGATCGGCTC-GGTCCCCCTCTACGTGC
** * *
14001510 TGCTGTCGATGCCG-CTG-TCGGTCCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
256 TGCTACCGAT-CCGATTGCT-GGT-CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
*
14001573 GGAATGAACTTTGTA
318 GGAATGAACTTCGTA
* * * *
14001588 TGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTAAGCCAGCCAGAGAGGCATAATGCACAA
1 TGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAGCCAGTCGGAGAGGCATAATGCGCAA
*
14001653 GCCAGGGATCGGCTCGGTCCCCCTCTGCGTGCTGTCGATCCCGCT
66 GCCAGGGATCAGCTCGGTCCCCCTCTGCGTGCTGTCGATCCCGCT
14001698 GCCAGTCTAG
Statistics
Matches: 361, Mismatches: 74, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
331 1 0.00
332 93 0.26
333 119 0.33
334 147 0.41
335 1 0.00
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.21
Consensus pattern (332 bp):
TGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCACTCAGCCAGTCGGAGAGGCATAATGCGCAA
GCCAGGGATCAGCTCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTACCCAACCCTCGATCTGGCT
AGGGCTTAGACCGAAAATGAATCCCGTATGCCTAAACCAACCCACAAAACGAGCGTGCGCACACT
CAGCCGACAGAAGAGGCAGGATACGCAAGCCGGGGATCGGCTCGGTCCCCCTCTACGTGCTGCTA
CCGATCCGATTGCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTTCGTA
Found at i:14002535 original size:45 final size:44
Alignment explanation
Indices: 14002481--14002636 Score: 132
Period size: 45 Copynumber: 3.5 Consensus size: 44
14002471 GGCTACCCTT
* * *
14002481 TGGTACGGGCACTTGCCTCGACCGCCATCGGCACAAGCTAGGCCC
1 TGGTACGGGCAGTTGCCTCGATCACCATCGGCACAAGCT-GGCCC
* * * * **
14002526 TGGTGCGGGCGGTTGCCTTGATCACCATTGGCACGTGCTGGCCC
1 TGGTACGGGCAGTTGCCTCGATCACCATCGGCACAAGCTGGCCC
* * * * *
14002570 TTGGTACAGGTAGTTACCTCGATCACCATCGACACACGCTGGGCCC
1 -TGGTACGGGCAGTTGCCTCGATCACCATCGGCACAAGCT-GGCCC
* **
14002616 TGGTGCGGGTGGTTGCCTCGA
1 TGGTACGGGCAGTTGCCTCGA
14002637 GCTCTAGTGT
Statistics
Matches: 86, Mismatches: 23, Indels: 4
0.76 0.20 0.04
Matches are distributed among these distances:
44 5 0.06
45 76 0.88
46 5 0.06
ACGTcount: A:0.15, C:0.31, G:0.32, T:0.22
Consensus pattern (44 bp):
TGGTACGGGCAGTTGCCTCGATCACCATCGGCACAAGCTGGCCC
Found at i:14002709 original size:24 final size:24
Alignment explanation
Indices: 14002682--14002728 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
14002672 AGCTCTTGCC
*
14002682 TCGAGCACCATTGGCACATGCTGT
1 TCGAGCACCATCGGCACATGCTGT
* *
14002706 TCGATCACCATCGGCACGTGCTG
1 TCGAGCACCATCGGCACATGCTG
14002729 GGCCCTGGTG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.19, C:0.32, G:0.26, T:0.23
Consensus pattern (24 bp):
TCGAGCACCATCGGCACATGCTGT
Found at i:14002776 original size:45 final size:45
Alignment explanation
Indices: 14002706--14003395 Score: 260
Period size: 45 Copynumber: 15.4 Consensus size: 45
14002696 CACATGCTGT
* ** *
14002706 TCGATCACCATCGGCACGTGCTGGGCCCTGGTGCGGGCGGTTGCC
1 TCGAACACCATCGGCACACGATGGGCCCTGGTGCGGGCGGTTGCC
* * **
14002751 TCGAGCACCATCGGCACACGATGGGCCCTGGTGTGGATGGTTGCC
1 TCGAACACCATCGGCACACGATGGGCCCTGGTGCGGGCGGTTGCC
* * *
14002796 TC-AAGCACCATCGGCACA-TACTGGGCCCTGGTGTGGGTGGTTGCC
1 TCGAA-CACCATCGGCACACGA-TGGGCCCTGGTGCGGGCGGTTGCC
* * * *
14002841 TCGATCACCATCGGCACAC-ACTGGGCCTTGGTGCAGGCGGTTACC
1 TCGAACACCATCGGCACACGA-TGGGCCCTGGTGCGGGCGGTTGCC
* * ** * *
14002886 TCGAACACCATCCGAACGTGCA-GGGCCTTGGTGCGGGTGGTTGCC
1 TCGAACACCATCGGCACACG-ATGGGCCCTGGTGCGGGCGGTTGCC
* * * * **** * * ** *
14002931 TTGAGCACCATTGGCACAAG-CCAACCCTTGGTGCAGCCTCTTACC
1 TCGAACACCATCGGCACACGATGGGCCC-TGGTGCGGGCGGTTGCC
* * * * * * * * ** * **
14002976 TCGACCATCATTGGTAGAAGATGGGCTCTAGTATGGGTGGTTGTG
1 TCGAACACCATCGGCACACGATGGGCCCTGGTGCGGGCGGTTGCC
* * * * * * ** *
14003021 TTGAACACCATCGACATACGCTAGGCCATGGTGCACGCAGTTGCC
1 TCGAACACCATCGGCACACGATGGGCCCTGGTGCGGGCGGTTGCC
* * * * * *
14003066 TCGAACACCATCGACACACGTTGGGCCCTAGTACGAGCAGTTGCC
1 TCGAACACCATCGGCACACGATGGGCCCTGGTGCGGGCGGTTGCC
* * * * ** *
14003111 TCGAGCACCATTGTCAGAAAAT-GG-CCTGGTGGCGGTC-GTT-CC
1 TCGAACACCATCGGCACACGATGGGCCCTGGT-GCGGGCGGTTGCC
* * *
14003153 TCGGAC-CTATC-GCACAAC-ATTGGG-CCT-GTGCGGGCAGTTGCC
1 TCGAACACCATCGGCAC-ACGA-TGGGCCCTGGTGCGGGCGGTTGCC
* *
14003195 TCGATCACCATCGGCACAC-ACTGGGCCTTGGTGCGGGCGGTTGCC
1 TCGAACACCATCGGCACACGA-TGGGCCCTGGTGCGGGCGGTTGCC
* * * ** ** *
14003240 TCGAACACCATTGCCACAAG-TCAGCCCTTGGTGCGGGCTCTTACC
1 TCGAACACCATCGGCACACGATGGGCCC-TGGTGCGGGCGGTTGCC
* * * * * * ** * *
14003285 TCGACCACCATCGACAGAAGATGGCCCCTGGTGCAGGTTGTTACG
1 TCGAACACCATCGGCACACGATGGGCCCTGGTGCGGGCGGTTGCC
* * * * * * *
14003330 TCGAACACCATCGGCACACGCTGAGCTCTAGGTACGAGCGATTACC
1 TCGAACACCATCGGCACACGATGGGCCCT-GGTGCGGGCGGTTGCC
* *
14003376 TCGATCACCATCGACACACG
1 TCGAACACCATCGGCACACG
14003396 CTGGTCGATC
Statistics
Matches: 467, Mismatches: 155, Indels: 45
0.70 0.23 0.07
Matches are distributed among these distances:
40 8 0.02
41 10 0.02
42 17 0.04
43 19 0.04
44 19 0.04
45 359 0.77
46 34 0.07
47 1 0.00
ACGTcount: A:0.19, C:0.31, G:0.29, T:0.21
Consensus pattern (45 bp):
TCGAACACCATCGGCACACGATGGGCCCTGGTGCGGGCGGTTGCC
Found at i:14002866 original size:90 final size:90
Alignment explanation
Indices: 14002706--14002948 Score: 294
Period size: 90 Copynumber: 2.7 Consensus size: 90
14002696 CACATGCTGT
* *
14002706 TCGATCACCATCGGCACGTGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACG
1 TCGAACACCATCGGCACGTGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAGCACCATCGGCACACG
* * *
14002771 ATGGGCCCTGGTG-TGGATGGTTGCC
66 ATGGGCCCTGGTGCAGG-CGGTTACC
* * * *
14002796 TC-AAGCACCATCGGCACATACTGGGCCCTGGTGTGGGTGGTTGCCTCGATCACCATCGGCACAC
1 TCGAA-CACCATCGGCACGTGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAGCACCATCGGCACAC
*
14002860 -ACTGGGCCTTGGTGCAGGCGGTTACC
65 GA-TGGGCCCTGGTGCAGGCGGTTACC
* * * * * *
14002886 TCGAACACCATCCGAACGTGCAGGGCCTTGGTGCGGGTGGTTGCCTTGAGCACCATTGGCACA
1 TCGAACACCATCGGCACGTGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAGCACCATCGGCACA
14002949 AGCCAACCCT
Statistics
Matches: 129, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
89 2 0.02
90 123 0.95
91 4 0.03
ACGTcount: A:0.16, C:0.30, G:0.33, T:0.21
Consensus pattern (90 bp):
TCGAACACCATCGGCACGTGCTGGGCCCTGGTGCGGGTGGTTGCCTCGAGCACCATCGGCACACG
ATGGGCCCTGGTGCAGGCGGTTACC
Found at i:14002948 original size:135 final size:135
Alignment explanation
Indices: 14002706--14002948 Score: 317
Period size: 135 Copynumber: 1.8 Consensus size: 135
14002696 CACATGCTGT
*** * * * * *
14002706 TCGATCACCATCGGCACGTGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACACG
1 TCGATCACCATCGGCACACACTGGGCCCTGGTGCAGGCGGTTACCTCGAACACCATCCGAACACG
*
14002771 ATGGGCCCTGGTGTGGATGGTTGCCTCAAGCACCATCGGCACATACTGGGCCCTGGTGTGGGTGG
66 ATGGGCCCTGGTGCGGATGGTTGCCTCAAGCACCATCGGCACATACTGGGCCCTGGTGTGGGTGG
14002836 TTGCC
131 TTGCC
* **
14002841 TCGATCACCATCGGCACACACTGGGCCTTGGTGCAGGCGGTTACCTCGAACACCATCCGAACGTG
1 TCGATCACCATCGGCACACACTGGGCCCTGGTGCAGGCGGTTACCTCGAACACCATCCGAACACG
* * ** *
14002906 CA-GGGCCTTGGTGCGGGTGGTTGCCTTGAGCACCATTGGCACA
66 -ATGGGCCCTGGTGCGGATGGTTGCCTCAAGCACCATCGGCACA
14002949 AGCCAACCCT
Statistics
Matches: 90, Mismatches: 17, Indels: 2
0.83 0.16 0.02
Matches are distributed among these distances:
135 89 0.99
136 1 0.01
ACGTcount: A:0.16, C:0.30, G:0.33, T:0.21
Consensus pattern (135 bp):
TCGATCACCATCGGCACACACTGGGCCCTGGTGCAGGCGGTTACCTCGAACACCATCCGAACACG
ATGGGCCCTGGTGCGGATGGTTGCCTCAAGCACCATCGGCACATACTGGGCCCTGGTGTGGGTGG
TTGCC
Found at i:14004197 original size:44 final size:44
Alignment explanation
Indices: 14004141--14004235 Score: 104
Period size: 44 Copynumber: 2.1 Consensus size: 44
14004131 CAGGCGGTTA
* *
14004141 CCTCGAATACCATCAG-CACACGTTGGGCCCT-GTGTGGGCAGTTG
1 CCTCG-ATACCAT-AGACACACGTTGCGCCCTGGTGAGGGCAGTTG
* **
14004185 CCTCGATCACCATTGACACACGTTGCGCCCTGGTGAGGGTGGTTG
1 CCTCGAT-ACCATAGACACACGTTGCGCCCTGGTGAGGGCAGTTG
14004230 CCTCGA
1 CCTCGA
14004236 CCACGATCGC
Statistics
Matches: 43, Mismatches: 5, Indels: 5
0.81 0.09 0.09
Matches are distributed among these distances:
43 3 0.07
44 24 0.56
45 16 0.37
ACGTcount: A:0.17, C:0.31, G:0.29, T:0.23
Consensus pattern (44 bp):
CCTCGATACCATAGACACACGTTGCGCCCTGGTGAGGGCAGTTG
Found at i:14004390 original size:45 final size:45
Alignment explanation
Indices: 14003717--14004386 Score: 309
Period size: 45 Copynumber: 14.9 Consensus size: 45
14003707 ATTACCTCGA
* * * * *
14003717 GCCCTAGTGTGGGCGGTTGCCTCGAGCACCATTGGCACACGATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGATGG
* * * * * *
14003762 GCTCTGGTGCGGGCGGTTACCTCGAGCAGCATCGGCACACGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGATGG
* * ** * *
14003807 GCCTTGGTGCAGGCAATTACCTCGATCACCATCGGCACAC-ATTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGA-TGG
* * * * *
14003852 GTCCTGGTACGGGCGGTTACCTCAAACACCATCG--ACACGTATAGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACG-AT-GG
* * * ** * **
14003897 GCCTTGGTGTGGGAGGTTGCCTCGGGCACCATCGACACAAG-CCG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGATGG
* ** * * *
14003941 ACCCTTGGTGCGGGCTCTTGCCTCGACCACCATCGACAGAAGAT-G
1 GCCC-TGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGATGG
** * * * * * *
14003986 GCCCTTGGTATGGGCGGTTACGTTGAAT-ACCATC-AGCAAATGCTGG
1 GCCC-TGGTGCGGGCGGTTGCCTCG-ATCACCATCGA-CACACGATGG
* ** * * * * * * *
14004032 GCTCTGGCACGTGTGGTTGCCTCGAACACAATCGGCACATGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGATGG
* * * * * * *
14004077 GCCTTAGTGCGGGCGATTGCCTCGAGCACCATCGGCAGAAGATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGATGG
* * * * *
14004122 CCCCTGGTACAGGCGGTTACCTCGAAT-ACCATC-AGCACACGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCG-ATCACCATCGA-CACACGATGG
* * * * *
14004167 GCCCT-GTGTGGGCAGTTGCCTCGATCACCATTGACACACGTTGC
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGATGG
* * * * * * * *
14004211 GCCCTGGTGAGGGTGGTTGCCTCGACCACGATCGCCATAAG-TCG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGATGG
* ** * * * * *
14004255 ACCCTTGGTGCGGGCTCTTGCCTCGACCATCATCGGCAGAAGATGG
1 GCCC-TGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGATGG
* * * * * * *
14004301 CCCCTGGTGCGGGTGGTTACGTCGAACACCATTGACACACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGATGG
* *
14004346 GCCCTGGTGTGGGCAGTTGCCTCGATCACCATCGACACACG
1 GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACG
14004387 CTGGTCGATC
Statistics
Matches: 461, Mismatches: 144, Indels: 40
0.71 0.22 0.06
Matches are distributed among these distances:
43 6 0.01
44 42 0.09
45 398 0.86
46 11 0.02
47 4 0.01
ACGTcount: A:0.19, C:0.30, G:0.31, T:0.21
Consensus pattern (45 bp):
GCCCTGGTGCGGGCGGTTGCCTCGATCACCATCGACACACGATGG
Found at i:14004602 original size:45 final size:44
Alignment explanation
Indices: 14004521--14004641 Score: 116
Period size: 45 Copynumber: 2.7 Consensus size: 44
14004511 GTGTGGGTGG
* * * *
14004521 TTACCTTGAGCACCATCGGCACACGTTGGGCCTTGGTACGGGCAG
1 TTACCTCGAGCACCATCGGCACAAGAT-GGCCTTGGTACGGGCAC
* * * * * *
14004566 TTGCTTCGAGCACCATCGGCATAAGCTGGCCTTTGGTGCGGGCTC
1 TTACCTCGAGCACCATCGGCACAAGATGGCC-TTGGTACGGGCAC
* *
14004611 TTACCTCGACCACCATCGGCAGAAGATGGCC
1 TTACCTCGAGCACCATCGGCACAAGATGGCC
14004642 CCTGTATCGA
Statistics
Matches: 61, Mismatches: 14, Indels: 2
0.79 0.18 0.03
Matches are distributed among these distances:
44 4 0.07
45 57 0.93
ACGTcount: A:0.18, C:0.31, G:0.29, T:0.22
Consensus pattern (44 bp):
TTACCTCGAGCACCATCGGCACAAGATGGCCTTGGTACGGGCAC
Found at i:14004813 original size:45 final size:45
Alignment explanation
Indices: 14004717--14004822 Score: 117
Period size: 45 Copynumber: 2.4 Consensus size: 45
14004707 GTGGTTACCT
* * * * *
14004717 CAACCACCATCAGTACACGTTGGCCCTTGGTGCGGGCAATCACAT
1 CAACCACCATCGGCACACGCTGGCCCTTGGTGCAGGCAATCACAG
*
14004762 CGACCACCATCGGCACACGCTGGCCCTTGGTGCAGGCACATGC-C-G
1 CAACCACCATCGGCACACGCTGGCCCTTGGTGCAGGCA-AT-CACAG
*
14004807 CAACCACCATTGGCAC
1 CAACCACCATCGGCAC
14004823 CTGCTCACCC
Statistics
Matches: 51, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
45 47 0.92
46 3 0.06
47 1 0.02
ACGTcount: A:0.23, C:0.38, G:0.24, T:0.16
Consensus pattern (45 bp):
CAACCACCATCGGCACACGCTGGCCCTTGGTGCAGGCAATCACAG
Found at i:14012481 original size:26 final size:26
Alignment explanation
Indices: 14012442--14012494 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14012432 CCTGTCCAAT
* *
14012442 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14012468 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14012494 C
1 C
14012495 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14012823 original size:26 final size:26
Alignment explanation
Indices: 14012786--14012838 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14012776 TCGATCCGAT
*
14012786 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACCGGGAATGAACTCCATATG
*
14012812 CTTAGACCGGGAATGAACTCCCTATG
1 CTTAGACCGGGAATGAACTCCATATG
14012838 C
1 C
14012839 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCATATG
Found at i:14014339 original size:45 final size:45
Alignment explanation
Indices: 14014086--14015100 Score: 553
Period size: 45 Copynumber: 22.2 Consensus size: 45
14014076 TGCGGGCTGT
* * * * **
14014086 GCTGGGCCTTCGTGCGGGAGGTTGCCTCGATCACCATCGGCACGT
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* * ** * * * *
14014131 G-TCGGGGCTTCATGTGGGAGGTTACCTCGAGCACCATCGGCACAA
1 GCT-GGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* * ** * * *
14014176 G-TCGACCCTTGGTGCGGGCTCTTACCTCGACCACCATTGGCACAA
1 GCTGGGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* * * * * * * * *
14014221 GAT-GGCCTCCGATGCGGACGGTTGCATCAAACACCATTGGCATAT
1 GCTGGGCC-CTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* *
14014266 GCTGGGCCCTGGTGCGTGTGGTTGCCTCGAACACCATCGGCACAA
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* * * * * *
14014311 GCTGGGCCCTGTTGTGGGCAGTTACCTCGAGCACCATCGGCAGAA
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* * * * * *
14014356 GATGGCCCCTGGTGCGAGCGGTTGCCTCGATCACCATTGGCACAC
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* * * * * * *
14014401 TCTAGGCCCTAGTGCGGGCAGTTGCCTCGACCAGCATCGCCACAA
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
** * ** * *
14014446 GC-CAGCCCTTGGTGAGGGCTCTTGCCTCGACCACCATCGGCAGAA
1 GCTGGGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* * * ** *
14014491 GATGGACCCTAGTGCGGGCGGTTGTGTAGAACACCATCGGCACACA
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA-A
* * *
14014537 -CTTGGCCCTGGTACGGGCGGTTGCCTCGAACACCATCAGCACAA
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* ** *
14014581 GCT-GGCCCTTGGTGTGGGCTCTTGCCTC-AACCACCATCGGCACAC
1 GCTGGGCCC-TGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACAA
* * *
14014626 GCTGGACCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGACACACA
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA-A
* * * * * *
14014672 -TTGGGCCCTGGTGCAGGCGGTTACCTCAAACACCATCGACACAT
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* * * *
14014716 GCTGGGCCCTGTTACGGGCGGTTGCCTCGATCACCATCGGCACAT
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* ** *
14014761 GCTGGGCCCTGGTACGGATGGTTACCTCGAACACCATCGGCACACA
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA-A
** * * * * * *
14014807 -CTGGGCCCTGGTGCTAGCGATTGCCTTGAGCACCATCGACATAC
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* * * * * *
14014851 GCTAGGCCCTGGTTCAGGCTATGCGGGTGGTTACCTCGAGCACCGTCGGCACAC
1 GCTGGGCCC----T--GG---TGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* * * * * * *
14014905 GTTGGGCCCTAGTGCGAGTGGTTGCCTCGAGC-CC-TGGTGCAGGGCAGTT
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCG-GCA---CA--A
* * * * * * * *
14014954 GCCTCGAGTCCTGGTGCAGACAGTTGCCTC-AAGCACGATCGGTACAC
1 G-CT-GGGCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACAA
* * * *
14015001 GCTGGGCCCTGGTGTGGGTGGTTGCCTCGATCACCATCGGCACAC
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
* * * * *
14015046 GCTGGGCCCTAGTGCGGGTGGTTGCCTCCAACACCATCAGTACATA
1 GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA-A
14015092 -CTGGGCCCT
1 GCTGGGCCCT
14015101 AGTGTAGGTG
Statistics
Matches: 732, Mismatches: 199, Indels: 78
0.73 0.20 0.08
Matches are distributed among these distances:
43 2 0.00
44 20 0.03
45 625 0.85
46 18 0.02
47 3 0.00
48 1 0.00
49 4 0.01
50 3 0.00
51 20 0.03
52 3 0.00
53 2 0.00
54 31 0.04
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (45 bp):
GCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA
Found at i:14014959 original size:26 final size:25
Alignment explanation
Indices: 14014925--14014983 Score: 91
Period size: 26 Copynumber: 2.3 Consensus size: 25
14014915 AGTGCGAGTG
*
14014925 GTTGCCTCGAGCCCTGGTGCAGGGCA
1 GTTGCCTCGAGCCCTGGTGCA-GACA
*
14014951 GTTGCCTCGAGTCCTGGTGCAGACA
1 GTTGCCTCGAGCCCTGGTGCAGACA
14014976 GTTGCCTC
1 GTTGCCTC
14014984 AAGCACGATC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
25 11 0.35
26 20 0.65
ACGTcount: A:0.12, C:0.31, G:0.34, T:0.24
Consensus pattern (25 bp):
GTTGCCTCGAGCCCTGGTGCAGACA
Found at i:14015101 original size:45 final size:45
Alignment explanation
Indices: 14014976--14015118 Score: 171
Period size: 45 Copynumber: 3.2 Consensus size: 45
14014966 GGTGCAGACA
* *
14014976 GTTGCCT-CAAGCACGATCGGTACACGCTGGGCCCTGGTGTGGGTG
1 GTTGCCTCCAA-CACCATCGGTACACGCTGGGCCCTAGTGTGGGTG
* * * *
14015021 GTTGCCTCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGTG
1 GTTGCCTCCAACACCATCGGTACACGCTGGGCCCTAGTGTGGGTG
* ** *
14015066 GTTGCCTCCAACACCATCAGTACATACTGGGCCCTAGTGTAGGTG
1 GTTGCCTCCAACACCATCGGTACACGCTGGGCCCTAGTGTGGGTG
*
14015111 GTTACCTC
1 GTTGCCTC
14015119 GAGCCCTGGT
Statistics
Matches: 82, Mismatches: 15, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
45 81 0.99
46 1 0.01
ACGTcount: A:0.16, C:0.30, G:0.31, T:0.23
Consensus pattern (45 bp):
GTTGCCTCCAACACCATCGGTACACGCTGGGCCCTAGTGTGGGTG
Found at i:14015130 original size:25 final size:25
Alignment explanation
Indices: 14015096--14015143 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
14015086 TACATACTGG
*
14015096 GCCCTAGTGT-AGGTGGTTACCTCGA
1 GCCCTAGTGTGA-GCGGTTACCTCGA
*
14015121 GCCCTGGTGTGAGCGGTTACCTC
1 GCCCTAGTGTGAGCGGTTACCTC
14015144 AAGCACCATC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 19 0.95
26 1 0.05
ACGTcount: A:0.12, C:0.27, G:0.33, T:0.27
Consensus pattern (25 bp):
GCCCTAGTGTGAGCGGTTACCTCGA
Found at i:14015196 original size:45 final size:45
Alignment explanation
Indices: 14015121--14015968 Score: 385
Period size: 45 Copynumber: 18.9 Consensus size: 45
14015111 GTTACCTCGA
* * * * *
14015121 GCCCTGGTGTGAGCGGTTACCTC-AAGCACCATCGACACATGATAG
1 GCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGACACAAGATGG
* * * *
14015166 GCCTTGGTGCGGGCGGTTGCCTCGAACACCAACGGCACACA-CTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACA-AGATGG
* * * *
14015211 GCCCTGGTGTGGGCGGTTGTCTCGACCACCATCGACAAAAGATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGATGG
* * * * * * * *
14015256 CCCCTGGTACGCGCGGTTACGTCGAACACCATTGGCACACA-TTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACA-AGATGG
* * * * * ** *
14015301 GCCTTGGTACGAGCGGTTGCCTCGACCACCATC-AGTACGTGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGA-CACAAGATGG
* * * * * * *
14015346 GCCTTGGTGTGAGAGGTTGCCTCGAGCACCATCGGCACAAG-TTG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGATGG
* ** * * * ** *
14015390 GCCCTTGGTGTGGGCTCTTGCCTTGACCACTATCGGTAGAAGAT-G
1 GCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGATGG
* * ** * * *
14015435 GCCCTTGGTGTGGGCAGTTGTGTCGAACACCATC-AGCATACGCTGG
1 GCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGA-CACAAGATGG
* * * * * * *
14015481 GCCCTGGTGCGCGCAGTTGCCTGGAACACCATCGGCACACGTTTG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGATGG
* * * *
14015526 GCCTTGGTGTGGGCGGTTGCCTCGAGCACCATCGACAGAAGATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGATGG
* * * * * *
14015571 CCCCTGGTGCGGGTGGTTGCCTCGAACACCATTGGCA-AACGTTGA
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAA-GATGG
* * * * * * *
14015616 GCCCTAGTGCGGGCAGTTGCCTCGATCACCATTGGCACACGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGATGG
* * * **
14015661 GCCCTAGTGCGGGCGGTTGCCTCGACCACCATCGCCACAAG-CCG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGATGG
* ** * * *
14015705 ACCCTTGGTGCGGGCTCTTGCGTC-AACCACCAAT-GATAGAAGATGG
1 GCCC-TGGTGCGGGCGGTTGCCTCGAA-CACC-ATCGACACAAGATGG
* * * * * *
14015751 CCCCTGGTGTGGGC-GTTGCGTCGAACACCATCGGCACACGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGATGG
** * * * * *
14015795 GCCCTGGTATGGGCAGTTACCTCGAGCACCATCGGCACACA-TTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACA-AGATGG
* * * * * * * *
14015840 GCCCTGGTACTGGTGGTTACCTCGAACACCATTGACATACA-CTGA
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACA-AGATGG
** * * * * * * * *
14015885 GCCCTATTACGGGTGCTTACCTCGATCACCATCGGCACATGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGATGG
* *
14015930 GCCTTGGTGCGGGCAGTTGCCTC-AAGCACCATCGACACA
1 GCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGACACA
14015969 CGTTGGGTGT
Statistics
Matches: 609, Mismatches: 170, Indels: 48
0.74 0.21 0.06
Matches are distributed among these distances:
43 2 0.00
44 44 0.07
45 547 0.90
46 16 0.03
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (45 bp):
GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGATGG
Found at i:14015210 original size:115 final size:115
Alignment explanation
Indices: 14015006--14015220 Score: 268
Period size: 115 Copynumber: 1.9 Consensus size: 115
14014996 TACACGCTGG
* * * * * * * * *
14015006 GCCCTGGTGTGGGTGGTTGCCTCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGGTGGTTGC
1 GCCCTGGTGTGAGCGGTTACCTCAAGCACCATCGACACACGATAGGCCCTAGTGCGGGCGGTTGC
* * *
14015071 CTCCAACACCATCAGTACATACTGGGCCCTAGTGTAGGTGGTTACCTCGA
66 CTCCAACACCAACAGCACACACTGGGCCCTAGTGTAGGTGGTTACCTCGA
* * *
14015121 GCCCTGGTGTGAGCGGTTACCTCAAGCACCATCGACACATGATAGGCCTTGGTGCGGGCGGTTGC
1 GCCCTGGTGTGAGCGGTTACCTCAAGCACCATCGACACACGATAGGCCCTAGTGCGGGCGGTTGC
* * *
14015186 CTCGAACACCAACGGCACACACTGGGCCCTGGTGT
66 CTCCAACACCAACAGCACACACTGGGCCCTAGTGT
14015221 GGGCGGTTGT
Statistics
Matches: 82, Mismatches: 18, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
115 82 1.00
ACGTcount: A:0.17, C:0.30, G:0.31, T:0.21
Consensus pattern (115 bp):
GCCCTGGTGTGAGCGGTTACCTCAAGCACCATCGACACACGATAGGCCCTAGTGCGGGCGGTTGC
CTCCAACACCAACAGCACACACTGGGCCCTAGTGTAGGTGGTTACCTCGA
Found at i:14024012 original size:26 final size:26
Alignment explanation
Indices: 14023983--14024035 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14023973 TCGGTCCGAT
14023983 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
* *
14024009 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
14024035 C
1 C
14024036 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:14024940 original size:45 final size:45
Alignment explanation
Indices: 14024891--14025095 Score: 157
Period size: 45 Copynumber: 4.6 Consensus size: 45
14024881 CATCGACTAT
* *
14024891 CATCGGCACAGGCT-GCCCTTAGGTACGGGCACTTGCCTCGATCGC
1 CATCGGCACAGGCTGGCCCTT-GGTGCGGGCACTTGCCTCGATCAC
* * *
14024936 CATCGGCATAAGCTAGGCCC-TGGTGCGGGCAGTTGCCTCGATCAC
1 CATCGGCACAGGCT-GGCCCTTGGTGCGGGCACTTGCCTCGATCAC
* ** * *
14024981 CATTGGCAC-GTGCTGGCCCTTGGTGCGGGCGGTTGCCTTGACCAC
1 CATCGGCACAG-GCTGGCCCTTGGTGCGGGCACTTGCCTCGATCAC
* ** * * * * * **
14025026 TATCAACAGAAGATGGGCCTTGGTGCAGGCGGTTGCCTCGATCAC
1 CATCGGCACAGGCTGGCCCTTGGTGCGGGCACTTGCCTCGATCAC
*
14025071 CATCGGCACACGCTAGGCCC-TGGTG
1 CATCGGCACAGGCT-GGCCCTTGGTG
14025096 TGATCGGTTA
Statistics
Matches: 125, Mismatches: 29, Indels: 12
0.75 0.17 0.07
Matches are distributed among these distances:
44 5 0.04
45 111 0.89
46 5 0.04
47 4 0.03
ACGTcount: A:0.16, C:0.31, G:0.32, T:0.21
Consensus pattern (45 bp):
CATCGGCACAGGCTGGCCCTTGGTGCGGGCACTTGCCTCGATCAC
Found at i:14025104 original size:45 final size:45
Alignment explanation
Indices: 14024923--14025125 Score: 176
Period size: 45 Copynumber: 4.5 Consensus size: 45
14024913 GTACGGGCAC
* * * *
14024923 TTGCCTCGATCGCCATCGGCATAAGCTAGGCCCTGGTGCGGGCAG
1 TTGCCTCGATCACCATCGGCACAAGCTAGGCCCTGGTGCGAGCGG
* ** *
14024968 TTGCCTCGATCACCATTGGCACGTGCT-GGCCCTTGGTGCGGGCGG
1 TTGCCTCGATCACCATCGGCACAAGCTAGGCCC-TGGTGCGAGCGG
* * * ** * * * *
14025013 TTGCCTTGACCACTATCAACAGAAGATGGGCCTTGGTGC-AGGCGG
1 TTGCCTCGATCACCATCGGCACAAGCTAGGCCCTGGTGCGA-GCGG
* * *
14025058 TTGCCTCGATCACCATCGGCACACGCTAGGCCCTGGTGTGATCGG
1 TTGCCTCGATCACCATCGGCACAAGCTAGGCCCTGGTGCGAGCGG
* *
14025103 TTACCTCGAACACCATCGGCACA
1 TTGCCTCGATCACCATCGGCACA
14025126 CACTAGTCGA
Statistics
Matches: 122, Mismatches: 32, Indels: 8
0.75 0.20 0.05
Matches are distributed among these distances:
44 5 0.04
45 112 0.92
46 5 0.04
ACGTcount: A:0.17, C:0.31, G:0.30, T:0.22
Consensus pattern (45 bp):
TTGCCTCGATCACCATCGGCACAAGCTAGGCCCTGGTGCGAGCGG
Found at i:14025353 original size:54 final size:54
Alignment explanation
Indices: 14025271--14025419 Score: 181
Period size: 54 Copynumber: 2.8 Consensus size: 54
14025261 ACGGTGGGCC
* * * * *
14025271 CTGTGCGGGCAGTTGCCTCGAGCACCATCGGCACATGTTGGGCCCTGGTGTAGA
1 CTGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCAGA
* * * * *
14025325 CTGTGCGGACGGTTGCCTCGATCACCATCGGCACACGCTGTGCCCTGGTGCGGG
1 CTGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCAGA
* * *
14025379 CTGTACGGGGGGTTGCCTCGACCACCATCGGCACACACTGG
1 CTGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGG
14025420 TCGATCACCA
Statistics
Matches: 80, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 80 1.00
ACGTcount: A:0.14, C:0.32, G:0.34, T:0.20
Consensus pattern (54 bp):
CTGTGCGGGCGGTTGCCTCGACCACCATCGGCACACGCTGGGCCCTGGTGCAGA
Found at i:14031822 original size:135 final size:134
Alignment explanation
Indices: 14031634--14031984 Score: 335
Period size: 135 Copynumber: 2.6 Consensus size: 134
14031624 GATGCTGACG
* * * * *
14031634 GTTGCCTCGAACACCATCGGCACATGTTGGGCCTTGGTGTAGGAGGTTGCCTCGAGCACCATCGG
1 GTTGCCTCGAACACCATCGGCATACGCTGGGCCTTGGTG-CGGAGGTTGCCTCGAACACCATCGG
** * * * *
14031699 CACAAG-TCGGCCCTTGGTGCGGGCTCTTGTCTCAACCACCATTGGTAAAAGATGGCCCCTGGTA
65 CACAAGCTCGGCCC-TGACGCGGGCGCTTGCCTCAACCACCATCGATAAAAGATGGCCCCTGGTA
14031763 TGGGCA
129 TGGGCA
** * * * * *
14031769 GTTGTGTTGAACACCATCGGCATACGCTGGGCCTTGGTGCGCGCGGTTACCTCGAACACCATTGA
1 GTTGCCTCGAACACCATCGGCATACGCTGGGCCTTGGTGCG-GAGGTTGCCTCGAACACCATCGG
* * * * * * * *
14031834 CACACGCTGGGCTCTGACGCTGGCGGTTGCCTCGACCACCATCGATAGAAGATGGCCCTTGGTAT
65 CACAAGCTCGGCCCTGACGCGGGCGCTTGCCTCAACCACCATCGATAAAAGATGGCCCCTGGTAT
14031899 GGGCA
130 GGGCA
* * * * * * *
14031904 GTTGCCTCAAACACCATCGGCATGCACTAGGCCCTGGTGCGGGTGGTTGCCTCGATCACCATCGG
1 GTTGCCTCGAACACCATCGGCATACGCTGGGCCTTGGTGC-GGAGGTTGCCTCGAACACCATCGG
* * *
14031969 CATACGCTGGGCCCTG
65 CACAAGCTCGGCCCTG
14031985 GTGCAAGCAG
Statistics
Matches: 172, Mismatches: 41, Indels: 6
0.79 0.19 0.03
Matches are distributed among these distances:
134 1 0.01
135 165 0.96
136 6 0.03
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (134 bp):
GTTGCCTCGAACACCATCGGCATACGCTGGGCCTTGGTGCGGAGGTTGCCTCGAACACCATCGGC
ACAAGCTCGGCCCTGACGCGGGCGCTTGCCTCAACCACCATCGATAAAAGATGGCCCCTGGTATG
GGCA
Found at i:14031864 original size:180 final size:180
Alignment explanation
Indices: 14031553--14031877 Score: 422
Period size: 180 Copynumber: 1.8 Consensus size: 180
14031543 GGTTGCCTCG
* * *
14031553 ACCACCATCGGTAGAAGATGGCCCCTGGTGCGGGTAGTTACGTTGAACACCATCGGCACACGCTG
1 ACCACCATCGGTAAAAGATGGCCCCTGGTACGGGCAGTTACGTTGAACACCATCGGCACACGCTG
* * * * **
14031618 GGCCCTGATGCTGACGGTTGCCTCGAACACCATCGGCACATGTTGGGCCTTGGTGTAGGAGGTTG
66 GGCCCTGATGCTGACGGTTACCTCGAACACCATCGACACACGCTGGGCCTTGACGTAGGAGGTTG
*
14031683 CCTCGAGCACCATCGGCACAAGTCGGCCCTTGGTGCGGGCTCTTGTCTCA
131 CCTCGACCACCATCGGCACAAGTCGGCCCTTGGTGCGGGCTCTTGTCTCA
* * ** *
14031733 ACCACCATTGGTAAAAGATGGCCCCTGGTATGGGCAGTTGTGTTGAACACCATCGGCATACGCTG
1 ACCACCATCGGTAAAAGATGGCCCCTGGTACGGGCAGTTACGTTGAACACCATCGGCACACGCTG
* * * * *
14031798 GGCCTTGGTGC-GCGCGGTTACCTCGAACACCATTGACACACGCTGGG-CTCTGACGCT-GGCGG
66 GGCCCTGATGCTG-ACGGTTACCTCGAACACCATCGACACACGCTGGGCCT-TGACG-TAGGAGG
14031860 TTGCCTCGACCACCATCG
128 TTGCCTCGACCACCATCG
14031878 ATAGAAGATG
Statistics
Matches: 122, Mismatches: 20, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
179 3 0.02
180 118 0.97
181 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.30, T:0.22
Consensus pattern (180 bp):
ACCACCATCGGTAAAAGATGGCCCCTGGTACGGGCAGTTACGTTGAACACCATCGGCACACGCTG
GGCCCTGATGCTGACGGTTACCTCGAACACCATCGACACACGCTGGGCCTTGACGTAGGAGGTTG
CCTCGACCACCATCGGCACAAGTCGGCCCTTGGTGCGGGCTCTTGTCTCA
Found at i:14031893 original size:180 final size:180
Alignment explanation
Indices: 14031553--14031923 Score: 417
Period size: 180 Copynumber: 2.1 Consensus size: 180
14031543 GGTTGCCTCG
* * *
14031553 ACCACCATCGGTAGAAGATGGCCCCTGGTGCGGGTAGTTACGTTGAACACCATCGGCACACGCTG
1 ACCACCATCGGTAAAAGATGGCCCCTGGTACGGGCAGTTACGTTGAACACCATCGGCACACGCTG
* * * * **
14031618 GGCCCTGATGCTGACGGTTGCCTCGAACACCATCGGCACATGTTGGGCCTTGGTGTAGGAGGTTG
66 GGCCCTGATGCTGACGGTTACCTCGAACACCATCGACACACGCTGGGCCTTGACGTAGGAGGTTG
* *
14031683 CCTCGAGCACCATCGGCACAAGTCGGCCCTTGGTGCGGGCTCTTGTCTCA
131 CCTCGACCACCATCGACACAAGTCGGCCCTTGGTGCGGGCTCTTGTCTCA
* * ** *
14031733 ACCACCATTGGTAAAAGATGGCCCCTGGTATGGGCAGTTGTGTTGAACACCATCGGCATACGCTG
1 ACCACCATCGGTAAAAGATGGCCCCTGGTACGGGCAGTTACGTTGAACACCATCGGCACACGCTG
* * * * *
14031798 GGCCTTGGTGC-GCGCGGTTACCTCGAACACCATTGACACACGCTGGG-CTCTGACGCT-GGCGG
66 GGCCCTGATGCTG-ACGGTTACCTCGAACACCATCGACACACGCTGGGCCT-TGACG-TAGGAGG
* * ** ** *
14031860 TTGCCTCGACCACCATCGATAGAAGAT-GGCCCTTGGTATGGGCAGTTGCCTCA
128 TTGCCTCGACCACCATCGACACAAG-TCGGCCCTTGGTGCGGGCTCTTGTCTCA
*
14031913 AACACCATCGG
1 ACCACCATCGG
14031924 CATGCACTAG
Statistics
Matches: 157, Mismatches: 30, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
179 3 0.02
180 152 0.97
181 2 0.01
ACGTcount: A:0.19, C:0.29, G:0.30, T:0.22
Consensus pattern (180 bp):
ACCACCATCGGTAAAAGATGGCCCCTGGTACGGGCAGTTACGTTGAACACCATCGGCACACGCTG
GGCCCTGATGCTGACGGTTACCTCGAACACCATCGACACACGCTGGGCCTTGACGTAGGAGGTTG
CCTCGACCACCATCGACACAAGTCGGCCCTTGGTGCGGGCTCTTGTCTCA
Found at i:14031985 original size:45 final size:45
Alignment explanation
Indices: 14031542--14031988 Score: 261
Period size: 45 Copynumber: 9.9 Consensus size: 45
14031532 ATGACACGGA
* * * * * *
14031542 CGGTTGCCTCGACCACCATCGGTAGAAGATGGCCCCTGGTGCGGG
1 CGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGG
** * * * * * *
14031587 TAGTTACGTTGAACACCATCGGCACACGCTGGGCCCTGATGCTGA
1 CGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGG
* * * **
14031632 CGGTTGCCTCGAACACCATCGGCACATGTTGGGCCTTGGTGTAGG
1 CGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGG
* * * *
14031677 AGGTTGCCTCGAGCACCATCGGCACAAG-TCGGCCCTTGGTGCGGG
1 CGGTTGCCTCGAACACCATCGGCACACGCTGGGCCC-TGGTGCGGG
** * * * * * * * **
14031722 CTCTTGTCTC-AACCACCATTGGTAAAAGATGGCCCCTGGTATGGG
1 CGGTTGCCTCGAA-CACCATCGGCACACGCTGGGCCCTGGTGCGGG
* ** * * * *
14031767 CAGTTGTGTTGAACACCATCGGCATACGCTGGGCCTTGGTGCGCG
1 CGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGG
* * * * ** *
14031812 CGGTTACCTCGAACACCATTGACACACGCTGGGCTCTGACGCTGG
1 CGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGG
* ** * * * **
14031857 CGGTTGCCTCGACCACCATCGATAGAAGAT-GGCCCTTGGTATGGG
1 CGGTTGCCTCGAACACCATCGGCACACGCTGGGCCC-TGGTGCGGG
* * ** * *
14031902 CAGTTGCCTCAAACACCATCGGCATGCACTAGGCCCTGGTGCGGG
1 CGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGG
* * *
14031947 TGGTTGCCTCGATCACCATCGGCATACGCTGGGCCCTGGTGC
1 CGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGC
14031989 AAGCAGTTAC
Statistics
Matches: 291, Mismatches: 105, Indels: 12
0.71 0.26 0.03
Matches are distributed among these distances:
44 10 0.03
45 269 0.92
46 12 0.04
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.22
Consensus pattern (45 bp):
CGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGG
Found at i:14032303 original size:45 final size:45
Alignment explanation
Indices: 14032254--14032419 Score: 154
Period size: 45 Copynumber: 3.7 Consensus size: 45
14032244 TTGCCTAGAC
* * *
14032254 CACCATCAGTACACGCTGGGCCCTGGTGCGGGTGGTTACCTCGAG
1 CACCATCAGCACACGCTGGGCCCTAGTACGGGTGGTTACCTCGAG
* * * * *
14032299 CACCATTAGCACATG-TTGGCCCTAGTACGGGTGGTTGCCTCGAT
1 CACCATCAGCACACGCTGGGCCCTAGTACGGGTGGTTACCTCGAG
* * * * * * *
14032343 CACTATCGGCACACGCTGGACCCTAGCACGGGCGGTTTCCTTGAG
1 CACCATCAGCACACGCTGGGCCCTAGTACGGGTGGTTACCTCGAG
* * * *
14032388 CACCATCAACACACGATAGGCCTTAGTACGGG
1 CACCATCAGCACACGCTGGGCCCTAGTACGGG
14032420 CTGTTGGTTC
Statistics
Matches: 93, Mismatches: 27, Indels: 2
0.76 0.22 0.02
Matches are distributed among these distances:
44 35 0.38
45 58 0.62
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.21
Consensus pattern (45 bp):
CACCATCAGCACACGCTGGGCCCTAGTACGGGTGGTTACCTCGAG
Found at i:14032670 original size:45 final size:44
Alignment explanation
Indices: 14032576--14032699 Score: 115
Period size: 45 Copynumber: 2.8 Consensus size: 44
14032566 GGTTGCCTCG
* * *
14032576 ACCACCATTGGCACATGCTGGCCCTTGGTGCGGGCAGTCACATCG
1 ACCACCATTGGCACATACTGGCCCTTGGTGCGGGCAG-CACACCA
* * *
14032621 ACCACCATTGGCACGTATTGGCCCTTGGTGCGGGCA-CATGCCCCA
1 ACCACCATTGGCACATACTGGCCCTTGGTGCGGGCAGCA--CACCA
* * ** *
14032666 ACCACCATCGGCACCTACTCACCCTCGGTGCGGG
1 ACCACCATTGGCACATACTGGCCCTTGGTGCGGG
14032700 ATATGCCTGT
Statistics
Matches: 65, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
43 2 0.03
45 63 0.97
ACGTcount: A:0.18, C:0.37, G:0.27, T:0.19
Consensus pattern (44 bp):
ACCACCATTGGCACATACTGGCCCTTGGTGCGGGCAGCACACCA
Found at i:14038392 original size:26 final size:26
Alignment explanation
Indices: 14038341--14038393 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14038331 CCTGTCCGAT
* *
14038341 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGATTAGGAATGAACTCCATATG
*
14038367 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGATTAGGAATGAACTCCATATG
14038393 C
1 C
14038394 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAGATTAGGAATGAACTCCATATG
Found at i:14038563 original size:170 final size:170
Alignment explanation
Indices: 14038376--14038939 Score: 523
Period size: 174 Copynumber: 3.3 Consensus size: 170
14038366 GCTTAGATTA
* * *
14038376 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAACCGATCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
* *
14038441 AGGCATAATGCGTAAGCCGGGGATCTGCCCGGTCCCCCTCTACGTGCTATCGATCCCACTGCGAT
66 AGGCATAATGCGTAAGCCGGGGATCTGCCCGGTCCCCCTCTGCGTGCTACCGATCCCACTGCGAT
14038506 CCAGCTGCCACAACCCTCGATCCAACTGGGGCTTAGACAT
131 CCAGCTGCCACAACCCTCGATCCAACTGGGGCTTAGACAT
* * ** * * *
14038546 GGAATGAACTTCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGGCACTCGACCGACCGGAG
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
** * * * * * *
14038611 AGGCAGGATGCGTAAGCTGAGGATCGGCCCAGTCCCCTTTTGCGTGCTGCTACCGATCCCACTGG
66 AGGCATAATGCGTAAGCCGGGGATCTGCCCGGTCCCCCTCTGC--G-TGCTACCGATCCCACT-G
* * * * * * **
14038676 CGGT-CTGAT-CTTA-AA--CTAGGAAT-GAACTCCGTATGCTTAGAC-T
127 CGATCCAGCTGC-CACAACCCT-CG-ATCCAACT--G-GGGCTTAGACAT
* * * * * *
14038719 GAGAATGAACTCCGTATGCCTAAGTTAACCCACGAAACGAGCGGGTGGGCGCTGAGCCGACCGAA
1 G-GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGA
* * * * * *
14038784 GAGGCATAATGCGTAAGCCGGGGAT-TGGCTCGATTCCTCTCTGCGTGCTACCGATCCCGCTACT
65 GAGGCATAATGCGTAAGCCGGGGATCT-GCCCGGTCCCCCTCTGCGTGCTACCGATCCCACTGC-
* *** *
14038848 GATCCAGCTGCCACAACCCTCGGTCTGCCTAGGGCTTAGACAT
128 GATCCAGCTGCCACAACCCTCGATCCAACTGGGGCTTAGACAT
* * *
14038891 GGAATGAACTCTGTATGCCTAACTCAACCCACGAAACGAGCGGGCGGGC
1 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
14038940 ACTATGCCGT
Statistics
Matches: 303, Mismatches: 71, Indels: 39
0.73 0.17 0.09
Matches are distributed among these distances:
170 92 0.30
171 74 0.24
172 13 0.04
173 26 0.09
174 96 0.32
175 2 0.01
ACGTcount: A:0.24, C:0.30, G:0.27, T:0.19
Consensus pattern (170 bp):
GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCGGAG
AGGCATAATGCGTAAGCCGGGGATCTGCCCGGTCCCCCTCTGCGTGCTACCGATCCCACTGCGAT
CCAGCTGCCACAACCCTCGATCCAACTGGGGCTTAGACAT
Found at i:14039990 original size:135 final size:133
Alignment explanation
Indices: 14039629--14040004 Score: 346
Period size: 135 Copynumber: 2.8 Consensus size: 133
14039619 AACATCGACT
* * * * *
14039629 CACGCTAGGCCTTAGTGCAGGTGATTGCCTCGAACACCATCGGCACAAGCCGGCCCTTGGTACCG
1 CACGCTAGGCCCTAGTGCAGGTGGTTGCCTCGAACACCATCGGCACAAACCTGCCCTTGGT-GCG
* * * * * * * *
14039694 GCTCTTGCCTCGACCACCATCGGTG-AAAGATAGCCCCTGGAATGGGCGGTTACGTCAAACACCA
65 GCTCTTGCCTCGACCACCATC--TGCACACATGGGCCCTGGTACGAGCGGTTACCTCAAACACCA
14039758 TCGGCA
128 TCGGCA
* * * * * * ** * *
14039764 TACGTTAGGCCCTAGTGCAAGCGGTTGCCTCGAGCACCATC-G-ATAGAAGATGGCCCCTAGTGC
1 CACGCTAGGCCCTAGTGCAGGTGGTTGCCTCGAACACCATCGGCACA-AACCT-GCCCTTGGTGC
** * * * * *
14039827 GAGCGGTTGCCTCGAACA-CAGTCAGCACACACTGGGCCCTGGTACGAGCGGTTGCCTTAATCAC
64 G-GCTCTTGCCTCGACCACCA-TCTGCACACA-TGGGCCCTGGTACGAGCGGTTACCTCAAACAC
14039891 CATCGGCA
126 CATCGGCA
*
14039899 CACGCTAGGCCCTAGTGCAGGTGGTTGCCTTGAACACCATCGGCACAAACCTGCCCTTGGTGCAG
1 CACGCTAGGCCCTAGTGCAGGTGGTTGCCTCGAACACCATCGGCACAAACCTGCCCTTGGTGC-G
*
14039964 GCTCTTGCCTCGACCACCATCTGCACACATTGGGCCTTGGT
65 GCTCTTGCCTCGACCACCATCTGCACACA-TGGGCCCTGGT
14040005 GTGGGTAGTT
Statistics
Matches: 184, Mismatches: 47, Indels: 20
0.73 0.19 0.08
Matches are distributed among these distances:
133 3 0.02
134 9 0.05
135 163 0.89
136 7 0.04
137 2 0.01
ACGTcount: A:0.21, C:0.32, G:0.27, T:0.20
Consensus pattern (133 bp):
CACGCTAGGCCCTAGTGCAGGTGGTTGCCTCGAACACCATCGGCACAAACCTGCCCTTGGTGCGG
CTCTTGCCTCGACCACCATCTGCACACATGGGCCCTGGTACGAGCGGTTACCTCAAACACCATCG
GCA
Found at i:14040150 original size:45 final size:45
Alignment explanation
Indices: 14039751--14040166 Score: 179
Period size: 45 Copynumber: 9.2 Consensus size: 45
14039741 GGTTACGTCA
* * * * *
14039751 AACACCATCGGCATACGTTAGGCCCTAGTGCAAGCGGTTGCCTCG
1 AACACCATCGGAACACGCTGGGCCCTAGTGCGAGCGGTTGCCTCG
* * * * *
14039796 AGCACCATC-GATAGAAGATGGCCCCTAGTGCGAGCGGTTGCCTCG
1 AACACCATCGGA-ACACGCTGGGCCCTAGTGCGAGCGGTTGCCTCG
* * * * * *
14039841 AACA-CAGTCAGCACACACTGGGCCCTGGTACGAGCGGTTGCCT-T
1 AACACCA-TCGGAACACGCTGGGCCCTAGTGCGAGCGGTTGCCTCG
* * * *
14039885 AATCACCATCGGCACACGCTAGGCCCTAGTGC-AGGTGGTTGCCTTG
1 AA-CACCATCGGAACACGCTGGGCCCTAGTGCGA-GCGGTTGCCTCG
* * **
14039931 AACACCATCGGCACAAAC-CT--GCCCTTGGTGC-AGGCTCTTGCCTCG
1 AACACCATCGG-A-ACACGCTGGGCCC-TAGTGCGA-GCGGTTGCCTCG
* * * ** * * * * ** *
14039976 ACCACCATCTGCACACATTGGGCCTTGGTGTGGGTAGTTACCTCG
1 AACACCATCGGAACACGCTGGGCCCTAGTGCGAGCGGTTGCCTCG
* * * * * * *
14040021 AGCACCATC--AACATGTGTTGGGCCCTAGTGCGGGCGATTACCTTG
1 AACACCATCGGAACA--CGCTGGGCCCTAGTGCGAGCGGTTGCCTCG
* * * * *
14040066 AACACCATC-GACACACGTTGGGCCCTATTGTGGGTGGTTGCCTCG
1 AACACCATCGGA-ACACGCTGGGCCCTAGTGCGAGCGGTTGCCTCG
* * * *
14040111 ATCACCATCGGAACACGCTGGGCCCTGGTGCTAGCGGTTGCCTTG
1 AACACCATCGGAACACGCTGGGCCCTAGTGCGAGCGGTTGCCTCG
*
14040156 AGCACCATCGG
1 AACACCATCGG
14040167 CATGCTAGGC
Statistics
Matches: 279, Mismatches: 73, Indels: 38
0.72 0.19 0.10
Matches are distributed among these distances:
43 6 0.02
44 11 0.04
45 243 0.87
46 13 0.05
47 6 0.02
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.21
Consensus pattern (45 bp):
AACACCATCGGAACACGCTGGGCCCTAGTGCGAGCGGTTGCCTCG
Found at i:14041150 original size:26 final size:26
Alignment explanation
Indices: 14041121--14041170 Score: 84
Period size: 26 Copynumber: 1.9 Consensus size: 26
14041111 GTCCGATATG
14041121 AGACTGGGAATGAACT-TCGTATGCTT
1 AGACTGGGAATGAACTCT-GTATGCTT
14041147 AGACTGGGAATGAACTCTGTATGC
1 AGACTGGGAATGAACTCTGTATGC
14041171 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
26 22 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (26 bp):
AGACTGGGAATGAACTCTGTATGCTT
Found at i:14041501 original size:26 final size:26
Alignment explanation
Indices: 14041465--14041515 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14041455 GGTTCGATCC
*
14041465 TAGATTGGGAATGAACTCCGTATGCT
1 TAGAATGGGAATGAACTCCGTATGCT
*
14041491 TAGAATGGGAATGAACTTCGTATGC
1 TAGAATGGGAATGAACTCCGTATGC
14041516 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGAATGGGAATGAACTCCGTATGCT
Found at i:14042478 original size:45 final size:44
Alignment explanation
Indices: 14042429--14042628 Score: 154
Period size: 45 Copynumber: 4.5 Consensus size: 44
14042419 CCGGCACTTA
* * *
14042429 CCTCGATCACCATCGGCACAAATAGGGCCCTGGTGCGGGTGGTTG
1 CCTCAATCACCATCGGCACAAAT-GGGCCCTGGTGCAGGCGGTTG
* * * * *
14042474 CCTCGATCACCATTGGCAC--GTGCTAGCCCTTGGTG-TGAGCGGTTG
1 CCTCAATCACCATCGGCACAAATG--GGCCC-TGGTGCAG-GCGGTTG
* * * *
14042519 TCTCAACCACCATCGACAGAAGATGGGCCCTGGTGCAGGCGGTTG
1 CCTCAATCACCATCGGCACAA-ATGGGCCCTGGTGCAGGCGGTTG
* ** *
14042564 CCTCAATCACCATCGACACACGCTGGGCCCTGGTGCAGGCAGTTG
1 CCTCAATCACCATCGGCACA-AATGGGCCCTGGTGCAGGCGGTTG
* *
14042609 CCTCAAACACCATGGGCACA
1 CCTCAATCACCATCGGCACA
14042629 CACTGGGTGA
Statistics
Matches: 123, Mismatches: 23, Indels: 18
0.75 0.14 0.11
Matches are distributed among these distances:
42 1 0.01
43 1 0.01
44 5 0.04
45 109 0.89
46 5 0.04
48 2 0.02
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.20
Consensus pattern (44 bp):
CCTCAATCACCATCGGCACAAATGGGCCCTGGTGCAGGCGGTTG
Found at i:14042614 original size:90 final size:90
Alignment explanation
Indices: 14042436--14042621 Score: 198
Period size: 90 Copynumber: 2.1 Consensus size: 90
14042426 TTACCTCGAT
* * * * * * **
14042436 CACCATCGGCACAAATAGGGCCCTGGTGCGGGTGGTTGCCTCGATCACCATTGGCACGTGCTAGC
1 CACCATCGACACAAATAGGGCCCTGGTGCAGGCGGTTGCCTCAATCACCATCGACACACGCTAGC
* * * *
14042501 CCTTGGTGTGAGCGGTTGTCTCAAC
66 CCTTGGTGAGAGCAGTTGCCTCAAA
* *
14042526 CACCATCGACAGAAGAT-GGGCCCTGGTGCAGGCGGTTGCCTCAATCACCATCGACACACGCTGG
1 CACCATCGACACAA-ATAGGGCCCTGGTGCAGGCGGTTGCCTCAATCACCATCGACACACGCT-A
14042590 GCCC-TGGTGCAG-GCAGTTGCCTCAAA
64 GCCCTTGGTG-AGAGCAGTTGCCTCAAA
14042616 CACCAT
1 CACCAT
14042622 GGGCACACAC
Statistics
Matches: 79, Mismatches: 14, Indels: 6
0.80 0.14 0.06
Matches are distributed among these distances:
90 72 0.91
91 7 0.09
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (90 bp):
CACCATCGACACAAATAGGGCCCTGGTGCAGGCGGTTGCCTCAATCACCATCGACACACGCTAGC
CCTTGGTGAGAGCAGTTGCCTCAAA
Found at i:14042902 original size:114 final size:112
Alignment explanation
Indices: 14042664--14042964 Score: 334
Period size: 114 Copynumber: 2.6 Consensus size: 112
14042654 GTGTGGGCTT
* * * * *
14042664 TTGCCTCGATCACCATTGGCACATGTTGGGCCCTGGTGCGGGCAGTTGCCTTGAGCACATCGGCA
1 TTGCCTCGATCACCATTGGTACATGTTGGGCCCTGGTG-AGGCGGTTGCCTCGAGCACATTGGCA
* * * * * *
14042729 CACGTTGGTTGATCACCATCGGCATACGCTGGGCCTCAGTACGAGCGG
65 CACGCTGGTTGACCACCATCAGCACACGCTGGGCCTCAATACGAGCAG
* *
14042777 TTGCCTCGATCACCATCGGTACACGTTGGGCCCTGGTGTAGGCGGTTGCCTCGAGCACTATTGGC
1 TTGCCTCGATCACCATTGGTACATGTTGGGCCCTGGTG-AGGCGGTTGCCTCGAGCAC-ATTGGC
* * *
14042842 ACATGCTGGTTGACCACCATCAGCACACGTTGGG-CTCTAATGCGAGCAG
64 ACACGCTGGTTGACCACCATCAGCACACGCTGGGCCTC-AATACGAGCAG
** * * * *
14042891 TTGCCTCGATCACCATTGGTACATACTGGGCCCCGGTGCGAGCGGTTGCCTCGAACACCATTAGC
1 TTGCCTCGATCACCATTGGTACATGTTGGGCCCTGGTGAG-GCGGTTGCCTCGAGCA-CATTGGC
*
14042956 ACACACTGG
64 ACACGCTGG
14042965 GCCCCAGTAC
Statistics
Matches: 157, Mismatches: 27, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
113 55 0.35
114 101 0.64
115 1 0.01
ACGTcount: A:0.18, C:0.30, G:0.29, T:0.23
Consensus pattern (112 bp):
TTGCCTCGATCACCATTGGTACATGTTGGGCCCTGGTGAGGCGGTTGCCTCGAGCACATTGGCAC
ACGCTGGTTGACCACCATCAGCACACGCTGGGCCTCAATACGAGCAG
Found at i:14042931 original size:45 final size:45
Alignment explanation
Indices: 14042882--14043093 Score: 232
Period size: 45 Copynumber: 4.7 Consensus size: 45
14042872 TGGGCTCTAA
* * * ** *
14042882 TGCGAGCAGTTGCCTCGATCACCATTGGTACATACTGGGCCCCGG
1 TGCGAGCGGTTGCCTCGAACACCATCGACACATACTGGGCCCCAG
* *
14042927 TGCGAGCGGTTGCCTCGAACACCAT-TAGCACACACTGGGCCCCAG
1 TGCGAGCGGTTGCCTCGAACACCATCGA-CACATACTGGGCCCCAG
* * * *
14042972 TACGAGCGGTTACCTCGAACACCATCGACACATGCTGGGCCTCAG
1 TGCGAGCGGTTGCCTCGAACACCATCGACACATACTGGGCCCCAG
* * **
14043017 TGCGAGCGGTTGTCTCGAACACCATCGACACATGCTGGGCCCTGG
1 TGCGAGCGGTTGCCTCGAACACCATCGACACATACTGGGCCCCAG
*
14043062 TGCTG-GCGGTTGCCTCGATCACCATCG-CACAT
1 TGC-GAGCGGTTGCCTCGAACACCATCGACACAT
14043094 GCTCAGCCCT
Statistics
Matches: 143, Mismatches: 21, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
44 5 0.03
45 136 0.95
46 2 0.01
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.20
Consensus pattern (45 bp):
TGCGAGCGGTTGCCTCGAACACCATCGACACATACTGGGCCCCAG
Found at i:14043010 original size:90 final size:87
Alignment explanation
Indices: 14042882--14043175 Score: 268
Period size: 90 Copynumber: 3.3 Consensus size: 87
14042872 TGGGCTCTAA
* * * *
14042882 TGCGAGCAGTTGCCTCGATCACCATTGGTACATACTGGGCCCCGGTGCGAGCGGTTGCCTCGAAC
1 TGCGAGCAGTTACCTCGATCACCA-TCGCACATGCTGGGCCCCGGTGCGAGCGGTTGCCTCGAAC
**
14042947 ACCATTAGCACACACTGGGCCCCAG
65 ACCA-T-GCACACACTGGGCCCTGG
* * * * * *
14042972 TACGAGCGGTTACCTCGAACACCATCGACACATGCTGGGCCTCAGTGCGAGCGGTTGTCTCGAAC
1 TGCGAGCAGTTACCTCGATCACCATCG-CACATGCTGGGCCCCGGTGCGAGCGGTTGCCTCGAAC
14043037 ACCAT-CGACACATGCTGGGCCCTGG
65 ACCATGC-ACACA--CTGGGCCCTGG
* * ** * * * * *
14043062 TGCTG-GCGGTTGCCTCGATCACCATCGCACATGCTCAGCCCTGGTACGGGCGGTTACCTCGAGC
1 TGC-GAGCAGTTACCTCGATCACCATCGCACATGCTGGGCCCCGGTGCGAGCGGTTGCCTCGAAC
*
14043126 ACCAATGACACACGCTGGGCCCTGG
65 ACC-ATG-CACACACTGGGCCCTGG
* *
14043151 TGCGTGCAGTTACCTCGACCACCAT
1 TGCGAGCAGTTACCTCGATCACCAT
14043176 TGGCACACGC
Statistics
Matches: 166, Mismatches: 29, Indels: 19
0.78 0.14 0.09
Matches are distributed among these distances:
87 1 0.01
88 6 0.04
89 64 0.39
90 89 0.54
91 5 0.03
92 1 0.01
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (87 bp):
TGCGAGCAGTTACCTCGATCACCATCGCACATGCTGGGCCCCGGTGCGAGCGGTTGCCTCGAACA
CCATGCACACACTGGGCCCTGG
Found at i:14043136 original size:89 final size:90
Alignment explanation
Indices: 14042929--14043175 Score: 243
Period size: 89 Copynumber: 2.8 Consensus size: 90
14042919 GGCCCCGGTG
* * * ** * *
14042929 CGAGCGGTTGCCTCGAACACCAT-TAGCACACACTGGGCCCCAGTACGAGCGGTTACCTCGAACA
1 CGAGCGGTTACCTCGAACACCATCGA-CACACGCTGGGCCCTGGTGCGTGCGGTTACCTCGAACA
* * *
14042993 CCATCGACACATGCTGGGCCTCAGTG
65 CCATCGACACATGCTAGCCCTCAGTA
** * * *
14043019 CGAGCGGTTGTCTCGAACACCATCGACACATGCTGGGCCCTGGTGC-TGGCGGTTGCCTCGATCA
1 CGAGCGGTTACCTCGAACACCATCGACACACGCTGGGCCCTGGTGCGT-GCGGTTACCTCGAACA
*
14043083 CCATCG-CACATGCTCAGCCCT-GGTA
65 CCATCGACACATGCT-AGCCCTCAGTA
* * * *
14043108 CGGGCGGTTACCTCGAGCACCAAT-GACACACGCTGGGCCCTGGTGCGTGCAGTTACCTCGACCA
1 CGAGCGGTTACCTCGAACACC-ATCGACACACGCTGGGCCCTGGTGCGTGCGGTTACCTCGAACA
14043172 CCAT
65 CCAT
14043176 TGGCACACGC
Statistics
Matches: 130, Mismatches: 22, Indels: 11
0.80 0.13 0.07
Matches are distributed among these distances:
89 65 0.50
90 64 0.49
91 1 0.01
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (90 bp):
CGAGCGGTTACCTCGAACACCATCGACACACGCTGGGCCCTGGTGCGTGCGGTTACCTCGAACAC
CATCGACACATGCTAGCCCTCAGTA
Found at i:14043163 original size:45 final size:45
Alignment explanation
Indices: 14042916--14043188 Score: 250
Period size: 45 Copynumber: 6.1 Consensus size: 45
14042906 TTGGTACATA
* * * *
14042916 CTGGGCCCCGGTGCGAGCGGTTGCCTCGAACACCAT-TAGCACACA
1 CTGGGCCCTGGTGCGAGCGGTTACCTCGAACACCATCGA-CACACG
** * *
14042961 CTGGGCCCCAGTACGAGCGGTTACCTCGAACACCATCGACACATG
1 CTGGGCCCTGGTGCGAGCGGTTACCTCGAACACCATCGACACACG
* ** *
14043006 CTGGG-CCTCAGTGCGAGCGGTTGTCTCGAACACCATCGACACATG
1 CTGGGCCCT-GGTGCGAGCGGTTACCTCGAACACCATCGACACACG
* * *
14043051 CTGGGCCCTGGTGCTG-GCGGTTGCCTCGATCACCATCG-CACATG
1 CTGGGCCCTGGTGC-GAGCGGTTACCTCGAACACCATCGACACACG
** * * *
14043095 CTCAGCCCTGGTACGGGCGGTTACCTCGAGCACCAAT-GACACACG
1 CTGGGCCCTGGTGCGAGCGGTTACCTCGAACACC-ATCGACACACG
* * * * *
14043140 CTGGGCCCTGGTGCGTGCAGTTACCTCGACCACCATTGGCACACG
1 CTGGGCCCTGGTGCGAGCGGTTACCTCGAACACCATCGACACACG
14043185 CTGG
1 CTGG
14043189 TCGATCACCA
Statistics
Matches: 194, Mismatches: 26, Indels: 16
0.82 0.11 0.07
Matches are distributed among these distances:
43 1 0.01
44 38 0.20
45 150 0.77
46 5 0.03
ACGTcount: A:0.19, C:0.34, G:0.29, T:0.18
Consensus pattern (45 bp):
CTGGGCCCTGGTGCGAGCGGTTACCTCGAACACCATCGACACACG
Found at i:14043168 original size:134 final size:135
Alignment explanation
Indices: 14042856--14043175 Score: 328
Period size: 135 Copynumber: 2.4 Consensus size: 135
14042846 GCTGGTTGAC
* * * * **
14042856 CACCATC-AGCACACGTTGGG-CTCTAATGCGAGCAGTTGCCTCGATCACCATTGGTACATACTG
1 CACCATCGA-CACACGCTGGGCCTC-AGTGCGAGCAGTTGCCTCGAACACCATCGACACATACTG
**
14042919 GGCCCCGGTGCGAGCGGTTGCCTCGAACACCATTAGCACACACTGGGCCCCAGTACGAGCGGTTA
64 GGCCCCGGTGCGAGCGGTTGCCTCGAACACCATTAGCACACACTCAGCCCCAGTACGAGCGGTTA
14042984 CCTCGAA
129 CCTCGAA
* * * *
14042991 CACCATCGACACATGCTGGGCCTCAGTGCGAGCGGTTGTCTCGAACACCATCGACACATGCTGGG
1 CACCATCGACACACGCTGGGCCTCAGTGCGAGCAGTTGCCTCGAACACCATCGACACATACTGGG
* * * ** ** *
14043056 CCCTGGTGCTG-GCGGTTGCCTCGATCACCA-TCGCACATGCTCAGCCCTGGTACGGGCGGTTAC
66 CCCCGGTGC-GAGCGGTTGCCTCGAACACCATTAGCACACACTCAGCCCCAGTACGAGCGGTTAC
*
14043119 CTCGAG
130 CTCGAA
* * * *
14043125 CACCAAT-GACACACGCTGGGCC-CTGGTGCGTGCAGTTACCTCGACCACCAT
1 CACC-ATCGACACACGCTGGGCCTC-AGTGCGAGCAGTTGCCTCGAACACCAT
14043176 TGGCACACGC
Statistics
Matches: 152, Mismatches: 28, Indels: 11
0.80 0.15 0.06
Matches are distributed among these distances:
133 1 0.01
134 69 0.45
135 77 0.51
136 5 0.03
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (135 bp):
CACCATCGACACACGCTGGGCCTCAGTGCGAGCAGTTGCCTCGAACACCATCGACACATACTGGG
CCCCGGTGCGAGCGGTTGCCTCGAACACCATTAGCACACACTCAGCCCCAGTACGAGCGGTTACC
TCGAA
Found at i:14043188 original size:134 final size:135
Alignment explanation
Indices: 14042856--14043188 Score: 345
Period size: 134 Copynumber: 2.5 Consensus size: 135
14042846 GCTGGTTGAC
* * * * *
14042856 CACCATC-AGCACACGTTGGG-CTCTAATGCGAGCAGTTGCCTCGATCACCATTGGTACATACTG
1 CACCATCGA-CACACGCTGGGCCTC-AGTGCGAGCAGTTGCCTCGAACACCATTGGCACATGCTG
**
14042919 GGCCCCGGTGCGAGCGGTTGCCTCGAACACCATTAGCACACACTGGGCCCCAGTACGAGCGGTTA
64 GGCCCCGGTGCGAGCGGTTGCCTCGAACACCATTAGCACACACTCAGCCCCAGTACGAGCGGTTA
14042984 CCTCGAA
129 CCTCGAA
* * * * *
14042991 CACCATCGACACATGCTGGGCCTCAGTGCGAGCGGTTGTCTCGAACACCATCGACACATGCTGGG
1 CACCATCGACACACGCTGGGCCTCAGTGCGAGCAGTTGCCTCGAACACCATTGGCACATGCTGGG
* * * ** ** *
14043056 CCCTGGTGCTG-GCGGTTGCCTCGATCACCA-TCGCACATGCTCAGCCCTGGTACGGGCGGTTAC
66 CCCCGGTGC-GAGCGGTTGCCTCGAACACCATTAGCACACACTCAGCCCCAGTACGAGCGGTTAC
*
14043119 CTCGAG
130 CTCGAA
* * * * *
14043125 CACCAAT-GACACACGCTGGGCC-CTGGTGCGTGCAGTTACCTCGACCACCATTGGCACACGCTG
1 CACC-ATCGACACACGCTGGGCCTC-AGTGCGAGCAGTTGCCTCGAACACCATTGGCACATGCTG
14043188 G
64 G
14043189 TCGATCACCA
Statistics
Matches: 162, Mismatches: 31, Indels: 11
0.79 0.15 0.05
Matches are distributed among these distances:
133 1 0.01
134 79 0.49
135 77 0.48
136 5 0.03
ACGTcount: A:0.20, C:0.34, G:0.27, T:0.19
Consensus pattern (135 bp):
CACCATCGACACACGCTGGGCCTCAGTGCGAGCAGTTGCCTCGAACACCATTGGCACATGCTGGG
CCCCGGTGCGAGCGGTTGCCTCGAACACCATTAGCACACACTCAGCCCCAGTACGAGCGGTTACC
TCGAA
Found at i:14043337 original size:44 final size:45
Alignment explanation
Indices: 14043220--14043341 Score: 115
Period size: 44 Copynumber: 2.7 Consensus size: 45
14043210 TGGGCCAATG
* * * * *
14043220 GGCCCTGGTGCGAGCTA-TAGCCTCGATCACCATCGACACACGTTA
1 GGCCCTGGTGCGGGC-AGTTGCCTCAAACACCATAGACACACGTTA
* ** * *
14043265 GGCCCTGGTACGGGTGGTTACGCT-AAACACCATAG-CACGCGTTA
1 GGCCCTGGTGCGGGCAGTTGC-CTCAAACACCATAGACACACGTTA
14043309 GGCCCTGGTGCGGGCAGTTGCCTCAAACACCAT
1 GGCCCTGGTGCGGGCAGTTGCCTCAAACACCAT
14043342 TGGCACAAGC
Statistics
Matches: 60, Mismatches: 14, Indels: 7
0.74 0.17 0.09
Matches are distributed among these distances:
43 2 0.03
44 34 0.57
45 22 0.37
46 2 0.03
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.20
Consensus pattern (45 bp):
GGCCCTGGTGCGGGCAGTTGCCTCAAACACCATAGACACACGTTA
Found at i:14043700 original size:135 final size:133
Alignment explanation
Indices: 14043322--14043716 Score: 371
Period size: 135 Copynumber: 2.9 Consensus size: 133
14043312 CCTGGTGCGG
* ** *
14043322 GCAGTTGCCTCAAACACCATTGGCACAAGCCGACCCTTGGTGCGGGCTCTAGCCTCGACCACCAT
1 GCAGTTACCTCAAACACCATCAGCACAAGCCG-CCCTTGGTGCGGGCTCTTGCCTCGACCACCAT
* * * ** * * *
14043387 CGACAAAAGATGGCCCTTGGTATGGGTGGTTGCGTTGAACACCATCGGCATATGCTAGGCCCTGG
65 CGGC-AAAGATGGCCCTTGGTACGGGTGGTTGCATCAAACACCATCGACACATGCTGGGCCCTGG
*
14043452 TGCAC
129 TACAC
* * * ** * * ** *
14043457 GCGGTTACCTCAAGCACCATCAGCAGAAGATGGCCCCTGGTACGGGCGGTTGCCTCGAACACCAT
1 GCAGTTACCTCAAACACCATCAGCACAAG-CCGCCCTTGGTGCGGGCTCTTGCCTCGACCACCAT
* * * ** * * * * *
14043522 CGGCAAACGCTCGGCCC-TAGTGCGAATGATTACCTCAATCACCATCGACACATGCTGGGCCTTG
65 CGGCAAA-GAT-GGCCCTTGGTACGGGTGGTTGCATCAAACACCATCGACACATGCTGGGCCCTG
14043586 GTACGA-
128 GTAC-AC
* *
14043592 GCAGTTACCTCAACCACCATCACCACAAGCCAGCCCTTGGTGCGGGCTCTTGCCTCGACCACCAT
1 GCAGTTACCTCAAACACCATCAGCACAAGCC-GCCCTTGGTGCGGGCTCTTGCCTCGACCACCAT
* *
14043657 TGGCAGAAGATGGCCCTTGGTACGGGCGGTTGCATCAAACACCATCGACACATGCTGGGC
65 CGGCA-AAGATGGCCCTTGGTACGGGTGGTTGCATCAAACACCATCGACACATGCTGGGC
14043717 TCTAGTGCAG
Statistics
Matches: 199, Mismatches: 54, Indels: 14
0.75 0.20 0.05
Matches are distributed among these distances:
134 8 0.04
135 182 0.91
136 9 0.05
ACGTcount: A:0.23, C:0.32, G:0.26, T:0.19
Consensus pattern (133 bp):
GCAGTTACCTCAAACACCATCAGCACAAGCCGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATC
GGCAAAGATGGCCCTTGGTACGGGTGGTTGCATCAAACACCATCGACACATGCTGGGCCCTGGTA
CAC
Found at i:14043760 original size:45 final size:45
Alignment explanation
Indices: 14043499--14044296 Score: 439
Period size: 45 Copynumber: 17.8 Consensus size: 45
14043489 GCCCCTGGTA
* * * *
14043499 CGGGCGGTTGCCTCGAACACCATCGGCAAACGCTCGGCCCTAGTG
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTG
*** * * * * * * *
14043544 CGAATGATTACCTCAATCACCATCGACACATGCTGGGCCTTGGTA
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTG
* * * * * * ** *
14043589 CGAGCAGTTACCTCAACCACCATC-ACCACAAGC-CAGCCCTTGGTG
1 CGGGCGGTTGCCTCGATCACCATCGA-CACACGCTGGGCCC-TAGTG
** * * * * * * * *
14043634 CGGGCTCTTGCCTCGACCACCATTGGCAGAAGAT-GGCCCTTGGTA
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCC-TAGTG
* * * * *
14043679 CGGGCGGTTGCATCAAACACCATCGACACATGCTGGGCTCTAGTG
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTG
* * *
14043724 CAGGTGATTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTG
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTG
* * * * * * *
14043769 TGGGCGGTTACCTCGAACACCATCGGCACAAGCT-AGCCCTTGGTG
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCC-TAGTG
** * * * *
14043814 CGGGCTCTTGCCTCGACCACCATTGACACACGCTGAGCCCTGGTG
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTG
* * * *
14043859 CAGGCAGTTGCCTCGAGT-ACCATCGGCACATGCTGGGCCCTAGTG
1 CGGGCGGTTGCCTCGA-TCACCATCGACACACGCTGGGCCCTAGTG
* * * * **
14043904 CGGGTGGTTACCTCGAACAACATCGGTACACGCTGGGCCCT-GTTG
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTAG-TG
* * * *
14043949 TGAGTGGTTGCCTCGATCACCATCGACACACGATGGGCCCTAGTG
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTG
* * * * * *** *
14043994 AGGGCGGTTGCCTCAAACACCATCGGCACAAGC-CAACCCTTATTG
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCC-TAGTG
* ** * * * *
14044039 CAGGCTCTTGCCTCGACCACCATCAACACACG-TGGGCCCTGGTA
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTG
* *
14044083 CGGGCGGTTGCCTCGA-AACCATCG-CACATGCTGGGCCCTAGTG
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTG
* * * * *
14044126 TGGGCGGTTGCCTCGATCACTATCGGCACACACTGGGCCCTGGTG
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTG
* * * ** *
14044171 CGGGCGGTTGCCTCGACCACCATCGCCACAAGCT-AACCCTTGGTG
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCC-TAGTG
** * ** * * * * * *
14044216 CGGGCCCTTGCCTCGACCACCATCGGTAAAAGATGGCCCCTGGTA
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTG
* * * *
14044261 CGGGTGGTTACGTCGAGCACCATCGACACACGCTGG
1 CGGGCGGTTGCCTCGATCACCATCGACACACGCTGG
14044297 TCGATCACCA
Statistics
Matches: 567, Mismatches: 168, Indels: 36
0.74 0.22 0.05
Matches are distributed among these distances:
42 5 0.01
43 31 0.05
44 36 0.06
45 482 0.85
46 13 0.02
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.20
Consensus pattern (45 bp):
CGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTG
Found at i:14043783 original size:135 final size:136
Alignment explanation
Indices: 14043644--14044240 Score: 518
Period size: 135 Copynumber: 4.4 Consensus size: 136
14043634 CGGGCTCTTG
* * * * *
14043644 CCTCGACCACCATTGGCAGAAGAT-GGCCCTTGGTACGGGCGGTTGCATCAAACACCATCGACAC
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTTGGTACGGGCGGTTGCCTCGAACACCATCGACAC
* * * * *
14043708 ATGCTGGGCTCTAGTGCAGGTGATTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTGTGGG
66 ACGCTGGGCCCTAGTGCAGGCGATTGCCTCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGG
14043773 CGGTTA
131 CGGTTA
* * * ** * *
14043779 CCTCGAACACCATCGGCACAAGCT-AGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATTGACAC
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTTGGTACGGGCGGTTGCCTCGAACACCATCGACAC
* * *
14043843 ACGCTGAGCCCTGGTGCAGGC-AGTTGCCTCGAGT-ACCATCGGCACATGCTGGGCCCTAGTGCG
66 ACGCTGGGCCCTAGTGCAGGCGA-TTGCCTCGA-TCACCATCGGCACACGCTGGGCCCTAGTGCG
*
14043906 GGTGGTTA
129 GGCGGTTA
* * * * * * * *
14043914 CCTCGAACAACATCGGTACACGCTGGGCCCTGTTGT--GAGTGGTTGCCTCGATCACCATCGACA
1 CCTCGACCACCATCGGCACAAGCTGGGCCCT-TGGTACGGGCGGTTGCCTCGAACACCATCGACA
* * * * * *** *
14043977 CACGATGGGCCCTAGTG-AGGGCGGTTGCCTCAAACACCATCGGCACAAGC-CAACCCTTATTGC
65 CACGCTGGGCCCTAGTGCA-GGCGATTGCCTCGATCACCATCGGCACACGCTGGGCCC-TAGTGC
* ** *
14044040 AGGCTCTTG
128 GGGCGGTTA
** *
14044049 CCTCGACCACCATCAACACACG-TGGGCCC-TGGTACGGGCGGTTGCCTCGAA-ACCATCG-CAC
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTTGGTACGGGCGGTTGCCTCGAACACCATCGACAC
* ** * * * *
14044110 ATGCTGGGCCCTAGTGTGGGCGGTTGCCTCGATCACTATCGGCACACACTGGGCCCTGGTGCGGG
66 ACGCTGGGCCCTAGTGCAGGCGATTGCCTCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGG
*
14044175 CGGTTG
131 CGGTTA
* ** * ** *
14044181 CCTCGACCACCATCGCCACAAGCT-AACCCTTGGTGCGGGCCCTTGCCTCGACCACCATCG
1 CCTCGACCACCATCGGCACAAGCTGGGCCCTTGGTACGGGCGGTTGCCTCGAACACCATCG
14044241 GTAAAAGATG
Statistics
Matches: 365, Mismatches: 82, Indels: 31
0.76 0.17 0.06
Matches are distributed among these distances:
132 78 0.21
133 29 0.08
134 32 0.09
135 217 0.59
136 6 0.02
137 3 0.01
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (136 bp):
CCTCGACCACCATCGGCACAAGCTGGGCCCTTGGTACGGGCGGTTGCCTCGAACACCATCGACAC
ACGCTGGGCCCTAGTGCAGGCGATTGCCTCGATCACCATCGGCACACGCTGGGCCCTAGTGCGGG
CGGTTA
Found at i:14043815 original size:180 final size:180
Alignment explanation
Indices: 14043423--14044296 Score: 616
Period size: 180 Copynumber: 4.9 Consensus size: 180
14043413 TGGTTGCGTT
* * ** * * * * ** *
14043423 GAACACCATCGGCATATGCT-AGGCCCTGGTGCACGCGGTTACCTCAAGCACCATCAGCAGAAGA
1 GAACACCATCGGCACAAGCTGA-GCCCTGGTGCGGGCGCTTGCCTCGACCACCATTGGCACAAGA
* * * * * **
14043487 TGGCCCCTGGTACGGGCGGTTGCCTCGAACACCATCGGCAAACGCTCGGCCCTAGTGCGAATGAT
65 TGGCCCTTGGTACAGGCGGTTGCCTCGAACACCATCGACACACGCTGGGCCCTAGTGCGGGTGAT
* * * * ** *
14043552 TACCTCAATCACCATCGACACATGCTGGGCCTTGGTACGAGCAGTTACCTC
130 TACCTCGATCACCATCGACACACGCTGGGCCCTAGTGTGAGCGGTTACCTC
** * * *
14043603 -AACCACCATCACCACAAGC-CAGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATTGGCAGAAG
1 GAA-CACCATCGGCACAAGCTGAGCCC-TGGTGCGGGCGCTTGCCTCGACCACCATTGGCACAAG
* * * * * *
14043666 ATGGCCCTTGGTACGGGCGGTTGCATCAAACACCATCGACACATGCTGGGCTCTAGTGCAGGTGA
64 ATGGCCCTTGGTACAGGCGGTTGCCTCGAACACCATCGACACACGCTGGGCCCTAGTGCGGGTGA
* *
14043731 TTGCCTCGATCACCATCGACACACGCTGGGCCCTAGTGTGGGCGGTTACCTC
129 TTACCTCGATCACCATCGACACACGCTGGGCCCTAGTGTGAGCGGTTACCTC
* * * *
14043783 GAACACCATCGGCACAAGCT-AGCCCTTGGTGCGGGCTCTTGCCTCGACCACCATTGACACACGC
1 GAACACCATCGGCACAAGCTGAGCCC-TGGTGCGGGCGCTTGCCTCGACCACCATTGGCACAAGA
* * ** * * *
14043847 TGAGCCC-TGGTGCAGGCAGTTGCCTCGAGTACCATCGGCACATGCTGGGCCCTAGTGCGGGTGG
65 TG-GCCCTTGGTACAGGCGGTTGCCTCGAACACCATCGACACACGCTGGGCCCTAGTGCGGGTGA
* * ** * *
14043911 TTACCTCGAACAACATCGGTACACGCTGGGCCCT-GTTGTGAGTGGTTGCCTC
129 TTACCTCGATCACCATCGACACACGCTGGGCCCTAG-TGTGAGCGGTTACCTC
* * * * * * * * * * * **
14043963 GATCACCATCGACACACGATGGGCCCTAGTGAGGGCGGTTGCCTCAAACACCATCGGCACAAGCC
1 GAACACCATCGGCACAAGCTGAGCCCTGGTGCGGGCGCTTGCCTCGACCACCATTGGCACAAGAT
** ** * ** * * * * * *
14044028 AACCCTTATTGCAGGCTCTTGCCTCGACCACCATCAACACACG-TGGGCCCTGGTACGGGCGGTT
66 GGCCCTTGGTACAGGCGGTTGCCTCGAACACCATCGACACACGCTGGGCCCTAGTGCGGGTGATT
* * * * *
14044092 GCCTCGA-AACCATCG-CACATGCTGGGCCCTAGTGTGGGCGGTTGCCTC
131 ACCTCGATCACCATCGACACACGCTGGGCCCTAGTGTGAGCGGTTACCTC
* * * * * * *
14044140 GATCACTATCGGCACACA-CTGGGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGCCACAAGC
1 GAACACCATCGGCACA-AGCTGAGCCCTGGTGCGGGCGCTTGCCTCGACCACCATTGGCACAAGA
** * * ** * ** * * * * * * *
14044204 TAACCCTTGGTGCGGGCCCTTGCCTCGACCACCATCGGTAAAAGATGGCCCCTGGTACGGGTGGT
65 TGGCCCTTGGTACAGGCGGTTGCCTCGAACACCATCGACACACGCTGGGCCCTAGTGCGGGTGAT
* *
14044269 TACGTCGAGCACCATCGACACACGCTGG
130 TACCTCGATCACCATCGACACACGCTGG
14044297 TCGATCACCA
Statistics
Matches: 561, Mismatches: 119, Indels: 28
0.79 0.17 0.04
Matches are distributed among these distances:
177 115 0.20
178 31 0.06
179 41 0.07
180 364 0.65
181 10 0.02
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.19
Consensus pattern (180 bp):
GAACACCATCGGCACAAGCTGAGCCCTGGTGCGGGCGCTTGCCTCGACCACCATTGGCACAAGAT
GGCCCTTGGTACAGGCGGTTGCCTCGAACACCATCGACACACGCTGGGCCCTAGTGCGGGTGATT
ACCTCGATCACCATCGACACACGCTGGGCCCTAGTGTGAGCGGTTACCTC
Found at i:14043825 original size:90 final size:90
Alignment explanation
Indices: 14043309--14044296 Score: 554
Period size: 90 Copynumber: 11.0 Consensus size: 90
14043299 GCACGCGTTA
* * * * * * *
14043309 GGCCCTGGTGCGGGCAGTTGCCTCAAACACCATTGGCACAAGC-CGACCCTTGGTGCGGGCTCTA
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCC-TGGTGCGGGCTGTT
* *
14043373 GCCTCGACCACCATCGACAAAAGAT-
65 GCCTCGACCACCATCGACACAAGCTG
** * * * * * * ** *
14043398 GGCCCTTGGTATGGGTGGTTGCGTTGAACACCATCGGCATATGCTAGGCCCTGGTGCACGCGGTT
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCTGTT
* * * * *
14043463 ACCTCAAGCACCATC-AGCAGAAGATG
65 GCCTCGACCACCATCGA-CACAAGCTG
* * * * **
14043489 GCCCCTGGTACGGGCGGTTGCCTCGAACACCATCGGCA-AACGCTCGGCCCTAGTGC-GAATGAT
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAA-GCTGGGCCCTGGTGCGGGCTG-T
* * * *
14043552 TACCTCAATCACCATCGACACATGCTG
64 TGCCTCGACCACCATCGACACAAGCTG
* * * * * ** ** *
14043579 GGCCTTGGTACGAGCAGTTACCTC-AACCACCATCACCACAAGC-CAGCCCTTGGTGCGGGCTCT
1 GGCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGGCACAAGCTGGGCCC-TGGTGCGGGCTGT
* * * *
14043642 TGCCTCGACCACCATTGGCAGAAGAT-
64 TGCCTCGACCACCATCGACACAAGCTG
* * * * * * * *
14043668 GGCCCTTGGTACGGGCGGTTGCATCAAACACCATCGACACATGCTGGGCTCTAGTGCAGG-TGAT
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCTG-T
* *
14043732 TGCCTCGATCACCATCGACACACGCTG
64 TGCCTCGACCACCATCGACACAAGCTG
* * * * *
14043759 GGCCCTAGTGTGGGCGGTTACCTCGAACACCATCGGCACAAGCT-AGCCCTTGGTGCGGGCTCTT
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCC-TGGTGCGGGCTGTT
* *
14043823 GCCTCGACCACCATTGACACACGCTG
65 GCCTCGACCACCATCGACACAAGCTG
* * * ** * *
14043849 AGCCCTGGTGCAGGCAGTTGCCTCGAGTACCATCGGCACATGCTGGGCCCTAGTGCGGG-TGGTT
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCT-GTT
* * * ** *
14043913 ACCTCGAACAACATCGGTACACGCTG
65 GCCTCGACCACCATCGACACAAGCTG
* * * * * * * * * * *
14043939 GGCCCTGTTGTGAGTGGTTGCCTCGATCACCATCGACACACGATGGGCCCTAGTGAGGGCGGTTG
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCTGTTG
* * * *
14044004 CCTCAAACACCATCGGCACAAGC-C
66 CCTCGACCACCATCGACACAAGCTG
** ** * ** * ** * * *
14044028 AACCCTTATTGCAGGCTCTTGCCTCGACCACCATCAACACACG-TGGGCCCTGGTACGGGCGGTT
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCTGTT
* *
14044092 GCCTCGA-AACCATCG-CACATGCTG
65 GCCTCGACCACCATCGACACAAGCTG
* * * * *
14044116 GGCCCTAGTGTGGGCGGTTGCCTCGATCACTATCGGCACACA-CTGGGCCCTGGTGCGGGCGGTT
1 GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACA-AGCTGGGCCCTGGTGCGGGCTGTT
*
14044180 GCCTCGACCACCATCGCCACAAGCT-
65 GCCTCGACCACCATCGACACAAGCTG
** ** * * * * * *
14044205 AACCCTTGGTGCGGGCCCTTGCCTCGACCACCATCGGTAAAAGATGGCCCCTGGTACGGG-TGGT
1 GGCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCT-GT
* * * *
14044269 TACGTCGAGCACCATCGACACACGCTG
64 TGCCTCGACCACCATCGACACAAGCTG
14044296 G
1 G
14044297 TCGATCACCA
Statistics
Matches: 685, Mismatches: 183, Indels: 60
0.74 0.20 0.06
Matches are distributed among these distances:
87 32 0.05
88 37 0.05
89 62 0.09
90 526 0.77
91 28 0.04
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.20
Consensus pattern (90 bp):
GGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCTGGGCCCTGGTGCGGGCTGTTG
CCTCGACCACCATCGACACAAGCTG
Found at i:14044374 original size:45 final size:45
Alignment explanation
Indices: 14044296--14044429 Score: 139
Period size: 45 Copynumber: 3.0 Consensus size: 45
14044286 ACACACGCTG
* ** * *
14044296 GTCGATCACCATCGGTACATGCTAGGCCCTGGTGTGGGCGGTTGAC
1 GTCGAACACCATCGACACAAGCTA-GCCCTGGTGCGGGCGGTTGAC
**
14044342 -TCGAACACCATCGACACAAGCTAGCCCTTGGTGCGGGCTCTT-AC
1 GTCGAACACCATCGACACAAGCTAGCCC-TGGTGCGGGCGGTTGAC
*
14044386 GTCGACCACCATCGACACACA-CTGAGCCCTGGTGCGGGCGGTTG
1 GTCGAACACCATCGACACA-AGCT-AGCCCTGGTGCGGGCGGTTG
14044430 CCTCAAGCAC
Statistics
Matches: 73, Mismatches: 10, Indels: 10
0.78 0.11 0.11
Matches are distributed among these distances:
44 6 0.08
45 61 0.84
46 6 0.08
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.20
Consensus pattern (45 bp):
GTCGAACACCATCGACACAAGCTAGCCCTGGTGCGGGCGGTTGAC
Found at i:14044439 original size:159 final size:159
Alignment explanation
Indices: 14044138--14044455 Score: 390
Period size: 159 Copynumber: 2.0 Consensus size: 159
14044128 GGCGGTTGCC
* * * * *
14044138 TCGATCACTATCGGCACACACTGGGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGCCACAAG
1 TCGATCACCATCGGCACACACTAGGCCCTGGTGCGGGCGGTTGACTCGAACACCATCGACACAAG
* * *
14044203 CTAACCCTTGGTGCGGGCCCTTGCCTCGACCACCATCGGTAAAAGATGGCCCCTGGTACGGGTGG
66 CTAACCCTTGGTGCGGGCCCTTACCTCGACCACCATCGGTAAAACATGGCCCCTGGTACGGGCGG
* *
14044268 TTACGTCGAGCACCATCGACACACGCTGG
131 TTACCTCAAGCACCATCGACACACGCTGG
* ** *
14044297 TCGATCACCATCGGTACATGCTAGGCCCTGGTGTGGGCGGTTGACTCGAACACCATCGACACAAG
1 TCGATCACCATCGGCACACACTAGGCCCTGGTGCGGGCGGTTGACTCGAACACCATCGACACAAG
* * * * *
14044362 CTAGCCCTTGGTGCGGGCTCTTACGTCGACCACCATC-G-ACACACACTGAG-CCCTGGTGCGGG
66 CTAACCCTTGGTGCGGGCCCTTACCTCGACCACCATCGGTA-AAACA-TG-GCCCCTGGTACGGG
* * *
14044424 CGGTTGCCTCAAGCACTATCGTCACACGCTGG
128 CGGTTACCTCAAGCACCATCGACACACGCTGG
14044456 GCCCTGTTAC
Statistics
Matches: 134, Mismatches: 22, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
157 1 0.01
158 4 0.03
159 128 0.96
160 1 0.01
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (159 bp):
TCGATCACCATCGGCACACACTAGGCCCTGGTGCGGGCGGTTGACTCGAACACCATCGACACAAG
CTAACCCTTGGTGCGGGCCCTTACCTCGACCACCATCGGTAAAACATGGCCCCTGGTACGGGCGG
TTACCTCAAGCACCATCGACACACGCTGG
Found at i:14044450 original size:45 final size:44
Alignment explanation
Indices: 14044321--14044461 Score: 124
Period size: 45 Copynumber: 3.1 Consensus size: 44
14044311 TACATGCTAG
* *
14044321 GCCCTGGTGTGGGCGGTTGACTCGAACACCATCGACACA-AGCT-A
1 GCCCTGGTGCGGGCGGTTGCCTC-AACACCATCGACACACA-CTGA
** * * *
14044365 GCCCTTGGTGCGGGCTCTTACGTCGACCACCATCGACACACACTGA
1 GCCC-TGGTGCGGGCGGTTGCCTC-AACACCATCGACACACACTGA
* * * *
14044411 GCCCTGGTGCGGGCGGTTGCCTCAAGCACTATCGTCACACGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCAA-CACCATCGACACACACTGA
14044456 GCCCTG
1 GCCCTG
14044462 TTACGGGCAG
Statistics
Matches: 77, Mismatches: 16, Indels: 7
0.77 0.16 0.07
Matches are distributed among these distances:
44 5 0.06
45 66 0.86
46 6 0.08
ACGTcount: A:0.18, C:0.34, G:0.29, T:0.19
Consensus pattern (44 bp):
GCCCTGGTGCGGGCGGTTGCCTCAACACCATCGACACACACTGA
Found at i:14044469 original size:45 final size:44
Alignment explanation
Indices: 14044396--14044508 Score: 118
Period size: 45 Copynumber: 2.5 Consensus size: 44
14044386 GTCGACCACC
* * * * *
14044396 ATCGACACACACTGAGCCCTGGTGCGGGCGGTTGCCTCAAGCACT
1 ATCG-CACACGCTGGGCCCTGGTACGGGCAGTTACCTCAAGCACT
* * *
14044441 ATCGTCACACGCTGGGCCCTGTTACGGGCAGTTACCTCGATCACT
1 ATCG-CACACGCTGGGCCCTGGTACGGGCAGTTACCTCAAGCACT
*
14044486 ATCAGCACATGCTGGGCCCTGGT
1 ATC-GCACACGCTGGGCCCTGGT
14044509 GCGGTTGGTT
Statistics
Matches: 56, Mismatches: 11, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
45 55 0.98
46 1 0.02
ACGTcount: A:0.19, C:0.33, G:0.27, T:0.21
Consensus pattern (44 bp):
ATCGCACACGCTGGGCCCTGGTACGGGCAGTTACCTCAAGCACT
Found at i:14044469 original size:90 final size:90
Alignment explanation
Indices: 14044321--14044522 Score: 194
Period size: 90 Copynumber: 2.2 Consensus size: 90
14044311 TACATGCTAG
* * * *
14044321 GCCCTGGTGTGGGCGGTTGACTCGAACACCATCGACACAAGCTAGCCCTTGGTGCGGGCTCTTAC
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTAGCCCTTGGTACGGGCACTTAC
*
14044386 GTCGACCACCATC-GACACACACTGA
66 CTCGACCACCATCAG-CACACACTGA
* * * * * *
14044411 GCCCTGGTGCGGGCGGTTGCCTC-AAGCACTATCGTCACACGCTGGGCCC-TGTTACGGGCAGTT
1 GCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGACACAAGCT-AGCCCTTGGTACGGGCACTT
* * ** *
14044474 ACCTCGATCACTATCAGCACATGCTGG
64 ACCTCGACCACCATCAGCACACACTGA
**
14044501 GCCCTGGTGCGGTTGGTTGCCT
1 GCCCTGGTGCGGGCGGTTGCCT
14044523 TGGGCGCCAT
Statistics
Matches: 91, Mismatches: 18, Indels: 6
0.79 0.16 0.05
Matches are distributed among these distances:
89 2 0.02
90 84 0.92
91 5 0.05
ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22
Consensus pattern (90 bp):
GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTAGCCCTTGGTACGGGCACTTAC
CTCGACCACCATCAGCACACACTGA
Found at i:14044622 original size:45 final size:45
Alignment explanation
Indices: 14044571--14045359 Score: 375
Period size: 45 Copynumber: 17.6 Consensus size: 45
14044561 GTTGCTTTGA
** ** * * *
14044571 GCCCTGGTATGGGCGGTTGCCTTTAGCACCATC-AGCACACGATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGA-CACATGCTGG
*
14044616 GCCCTGGTGCGGGTGGTTGCCTCGAACACCATCGACACATGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGG
* * * *
14044661 GCCCTGGTGCGAGCGGTTACCTCGATCACCATCAACACATGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGG
* * *
14044706 GCCCTGGTGCGGGCGGTTGCCTTGACCACCATCGACACATGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGG
* * * *
14044751 GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGACATAAGATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGG
* * * * * * * * * *
14044796 CCCCTGGTGCAGACGATTGCCTC-AACCACTATTGGCAGAAGAT-G
1 GCCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGACACATGCTGG
* * * * *
14044840 GCCCTTGGTGCAGTCGGTTACGTCGAACACCATCGACACACGCTGG
1 GCCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGG
** * * ** *
14044886 GCCCTGGTGTAGGCGGTTGCCTCGTACACCATC-AGTATGTGTTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGA-CACATGCTGG
* * * * * * *
14044931 GCCTTGGTACGGGAGGTTACCTCGAGCACCATCGGCACAAGCT-G
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGG
* * ** * ** * * *
14044975 ACCCTTGGTGCAGGCTCTTGCCT--AACCATCATCGGTAGAAGAT-G
1 GCCC-TGGTGCGGGCGGTTGCCTCGAA-CACCATCGACACATGCTGG
* * * * * * *
14045019 GCCTCTGGTACAGGCAGTTGCATCGAACACCATCGGCATACGCTGG
1 GCC-CTGGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGG
* * * * *
14045065 GCCCTGATGCGCGCGATTGTCTCAAACACCATCGGTACACA--CTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATC-G-ACACATGCTGG
* * * ** * * *
14045110 GTCCTGGTGCGAGCGGTTGCCTCGAGCACCATCGGTAGAAGATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGG
* * * * *
14045155 CCCCTGGTGTGGGCGATAGCCTCGATCACCATC-AGCAC-TCGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGA-CACAT-GCTGG
* * ** * *
14045200 GCCCTGGTGCGGGTGATTAACTCGACCACCATC-AC-CATAAGGC-AG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAT---GCTGG
* * ** * * * * *
14045245 CCCCTGGTGTGGGCTCTTGCCTCGACCACCATCGGCAGAAGATGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGG
* * * * * *
14045290 CCCCTGGTGCGGGCGATTACGTCGAGCACCATCGGCACATGCTGG
1 GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGG
* ** *
14045335 GCCCTAGTATGGGTGGTTGCCTCGA
1 GCCCTGGTGCGGGCGGTTGCCTCGA
14045360 TCACGATCAG
Statistics
Matches: 557, Mismatches: 162, Indels: 50
0.72 0.21 0.07
Matches are distributed among these distances:
43 4 0.01
44 43 0.08
45 488 0.88
46 18 0.03
47 4 0.01
ACGTcount: A:0.19, C:0.30, G:0.30, T:0.21
Consensus pattern (45 bp):
GCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACATGCTGG
Found at i:14044702 original size:160 final size:160
Alignment explanation
Indices: 14044408--14044730 Score: 373
Period size: 160 Copynumber: 2.0 Consensus size: 160
14044398 CGACACACAC
* * * *
14044408 TGAGCCCTGGTGCGGGCGGTTGCCTCAAGCACTATCGTCACACGCTGGGCCCTGTTACGGGCAGT
1 TGAGCCCTGGTACGGGCGGTTGCCTCAAGCACCATCGTCACACGATGGGCCCTGGTACGGGCAGT
* * * * * * * **
14044473 TACCTCGATCACTATCAGCACATGCTGGGCCCTGGTGCGGTTGGTTGCCTTGGGCGCCATCGGCA
66 TACCTCGAACACCATCAGCACATGCTGGGCCCTGGTGCGGTCGGTTACCTCGAGCACCATCAACA
* * *
14044538 CATGCTGGGCCTTGGTATGGGCGGTTGCTT
131 CATGCTGGGCCCTGGTACGGGCGGTTGCCT
* ** * **
14044568 TGAGCCCTGGTATGGGCGGTTGCCTTTAGCACCATCAG-CACACGATGGGCCCTGGTGCGGGTGG
1 TGAGCCCTGGTACGGGCGGTTGCCTCAAGCACCATC-GTCACACGATGGGCCCTGGTACGGGCAG
* *
14044632 TTGCCTCGAACACCATC-GACACATGCTGGGCCCTGGTGCGAG-CGGTTACCTCGATCACCATCA
65 TTACCTCGAACACCATCAG-CACATGCTGGGCCCTGGTGCG-GTCGGTTACCTCGAGCACCATCA
*
14044695 ACACATGCTGGGCCCTGGTGCGGGCGGTTGCCT
128 ACACATGCTGGGCCCTGGTACGGGCGGTTGCCT
14044728 TGA
1 TGA
14044731 CCACCATCGA
Statistics
Matches: 135, Mismatches: 25, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
159 1 0.01
160 132 0.98
161 2 0.01
ACGTcount: A:0.14, C:0.29, G:0.33, T:0.23
Consensus pattern (160 bp):
TGAGCCCTGGTACGGGCGGTTGCCTCAAGCACCATCGTCACACGATGGGCCCTGGTACGGGCAGT
TACCTCGAACACCATCAGCACATGCTGGGCCCTGGTGCGGTCGGTTACCTCGAGCACCATCAACA
CATGCTGGGCCCTGGTACGGGCGGTTGCCT
Found at i:14044771 original size:135 final size:134
Alignment explanation
Indices: 14044571--14045339 Score: 481
Period size: 135 Copynumber: 5.7 Consensus size: 134
14044561 GTTGCTTTGA
** ** * * *
14044571 GCCCTGGTATGGGCGGTTGCCTTTAGCACCATC-AGCACACGATGGGCCCTGGTGCGGGTGGTTG
1 GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGA-CACAAGATGGGCCCTGGTGCGGGCGGTTG
* * * *
14044635 CCTCGAACACCATCGACACATGCTGGGCCCTGGTGCGAGCGGTTACCTCGATCACCATCAACACA
65 CCTCGAACACCATCGACACATGCTGGGCCCTGGTGCGGGCGATTACCTCGACCACCATCAGCACA
*
14044700 TGCTGG
130 AGCT-G
* * *
14044706 GCCCTGGTGCGGGCGGTTGCCTTGACCACCATCGACACATGTTGGGCCCTGGTGCGGGCGGTTGC
1 GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATGGGCCCTGGTGCGGGCGGTTGC
* * * * * * * * * * ** *
14044771 CTCGACCACCATCGACATAAGATGGCCCCTGGTGCAGACGATTGCCTCAACCACTATTGGCAGAA
66 CTCGAACACCATCGACACATGCTGGGCCCTGGTGCGGGCGATTACCTCGACCACCATCAGCACAA
*
14044836 GATG
131 GCTG
* * * * * * * **
14044840 GCCCTTGGTGCAGTCGGTTACGTCGAACACCATCGACACACGCTGGGCCCTGGTGTAGGCGGTTG
1 GCCC-TGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATGGGCCCTGGTGCGGGCGGTTG
* * ** * * * * * * *
14044905 CCTCGTACACCATC-AGTATGTGTTGGGCCTTGGTACGGGAGGTTACCTCGAGCACCATCGGCAC
65 CCTCGAACACCATCGA-CACATGCTGGGCCCTGGTGCGGGCGATTACCTCGACCACCATCAGCAC
14044969 AAGCTG
129 AAGCTG
* * ** * * ** * * * *
14044975 ACCCTTGGTGCAGGCTCTTGCCT-AACCATCATCGGTAGAAGAT-GGCCTCTGGTACAGGCAGTT
1 GCCC-TGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATGGGCC-CTGGTGCGGGCGGTT
* * * * * * ** * * * *
14045038 GCATCGAACACCATCGGCATACGCTGGGCCCTGATGCGCGCGATTGTCTCAAACACCATCGGTAC
64 GCCTCGAACACCATCGACACATGCTGGGCCCTGGTGCGGGCGATTACCTCGACCACCATCAGCAC
14045103 ACA-CTGG
129 A-AGCT-G
* * * ** * * * * *
14045110 GTCCTGGTGCGAGCGGTTGCCTCGAGCACCATCGGTAGAAGATGGCCCCTGGTGTGGGCGATAGC
1 GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATGGGCCCTGGTGCGGGCGGTTGC
* * * * *
14045175 CTCGATCACCATC-AGCAC-TCGCTGGGCCCTGGTGCGGGTGATTAACTCGACCACCATCACCAT
66 CTCGAACACCATCGA-CACAT-GCTGGGCCCTGGTGCGGGCGATTACCTCGACCACCATCAGCAC
*
14045238 AAGGCAG
129 AA-GCTG
* * ** * * * * *
14045245 CCCCTGGTGTGGGCTCTTGCCTCGACCACCATCGGCAGAAGATGGCCCCTGGTGCGGGCGATTAC
1 GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATGGGCCCTGGTGCGGGCGGTTGC
* * *
14045310 GTCGAGCACCATCGGCACATGCTGGGCCCT
66 CTCGAACACCATCGACACATGCTGGGCCCT
14045340 AGTATGGGTG
Statistics
Matches: 481, Mismatches: 138, Indels: 30
0.74 0.21 0.05
Matches are distributed among these distances:
133 4 0.01
134 94 0.20
135 377 0.78
136 6 0.01
ACGTcount: A:0.19, C:0.31, G:0.30, T:0.21
Consensus pattern (134 bp):
GCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGACACAAGATGGGCCCTGGTGCGGGCGGTTGC
CTCGAACACCATCGACACATGCTGGGCCCTGGTGCGGGCGATTACCTCGACCACCATCAGCACAA
GCTG
Found at i:14045135 original size:179 final size:179
Alignment explanation
Indices: 14044676--14045163 Score: 421
Period size: 179 Copynumber: 2.7 Consensus size: 179
14044666 GGTGCGAGCG
* * * * * ** * ** *
14044676 GTTACCTCGATCACCATCAACACATGCTGGGCCCTGGTGCGGGCGGTTGCCTTGACCACCATC-G
1 GTTACATCGAACACCATCGACACACGCTGGGCCCTGATGTAGGCGATTGCCTCAAACACCATCAG
* * * * *
14044740 -ACACATGTTGGGCCCTGGTGCGGGCGGTTGCCTCGACCACCATCGACATAAGATGGCCCCTGGT
66 TACACA--CTGGG-CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACAAGATGACCCCTGGT
* * * *
14044804 GCAGACGATTGCCTCAACCACTATTGGCAGAAGATGGCCCTTGGTGCAGTCG
128 GCAGACGATTGCCTCAACCACTATCGGCAGAAGATGGCCCTTGGTACAGGCA
* * * **
14044856 GTTACGTCGAACACCATCGACACACGCTGGGCCCTGGTGTAGGCGGTTGCCTCGTACACCATCAG
1 GTTACATCGAACACCATCGACACACGCTGGGCCCTGATGTAGGCGATTGCCTCAAACACCATCAG
***** * * * * *
14044921 TATGTGTTGGGCCTTGGTACGGGAGGTTACCTCGAGCACCATCGGCACAAGCTGACCCTTGGTGC
66 TACACACTGGGCC-TGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACAAGATGACCCCTGGTGC
* ** *
14044986 AGGCTCTTGCCT-AACCA-TCATCGGTAGAAGATGG-CCTCTGGTACAGGCA
130 AGACGATTGCCTCAACCACT-ATCGGCAGAAGATGGCCCT-TGGTACAGGCA
* * * * * *
14045035 GTTGCATCGAACACCATCGGCATACGCTGGGCCCTGATG-CGCGCGATTGTCTCAAACACCATCG
1 GTTACATCGAACACCATCGACACACGCTGGGCCCTGATGTAG-GCGATTGCCTCAAACACCATCA
* * * *
14045099 GTACACACTGGGTCCTGGTGCGAGCGGTTGCCTCGAGCACCATCGGTAGAAGATGGCCCCTGGTG
65 GTACACACTGGG-CCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACAAGATGACCCCTGGTG
14045164 TGGGCGATAG
Statistics
Matches: 246, Mismatches: 55, Indels: 15
0.78 0.17 0.05
Matches are distributed among these distances:
178 5 0.02
179 127 0.52
180 112 0.46
181 1 0.00
182 1 0.00
ACGTcount: A:0.19, C:0.30, G:0.29, T:0.21
Consensus pattern (179 bp):
GTTACATCGAACACCATCGACACACGCTGGGCCCTGATGTAGGCGATTGCCTCAAACACCATCAG
TACACACTGGGCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACAAGATGACCCCTGGTGCA
GACGATTGCCTCAACCACTATCGGCAGAAGATGGCCCTTGGTACAGGCA
Found at i:14046717 original size:16 final size:16
Alignment explanation
Indices: 14046696--14046731 Score: 72
Period size: 16 Copynumber: 2.2 Consensus size: 16
14046686 CTACTGGCAG
14046696 CAAACCTGTAAAATCT
1 CAAACCTGTAAAATCT
14046712 CAAACCTGTAAAATCT
1 CAAACCTGTAAAATCT
14046728 CAAA
1 CAAA
14046732 TGCTTAATCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.47, C:0.25, G:0.06, T:0.22
Consensus pattern (16 bp):
CAAACCTGTAAAATCT
Found at i:14046986 original size:45 final size:45
Alignment explanation
Indices: 14046916--14047178 Score: 224
Period size: 45 Copynumber: 5.8 Consensus size: 45
14046906 CACACATTGG
* * *
14046916 TCGATCACCATCGGCATACGTTGGGCCCCGGTACGGGTGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCCGGTACGGGCGGTTGCC
* *
14046961 TTGATCACCATCGGCACATGCTGGGCCCCGGTGA-GGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCCGGT-ACGGGCGGTTGCC
* ** * *
14047006 TCGAACACCATCGGCACACGCTGGGCCTTGGTGCTGGCGGTTGCC
1 TCGATCACCATCGGCACACGCTGGGCCCCGGTACGGGCGGTTGCC
* * * * * * *
14047051 TCGATCACCATCAGCACACGTTAGGCCCTGGTGCGGTCGGTTACC
1 TCGATCACCATCGGCACACGCTGGGCCCCGGTACGGGCGGTTGCC
* * * ** * * *
14047096 TCAAACACCATCAGCACACGCT-GGCCCTTAGTGCGGGCAGCTGCC
1 TCGATCACCATCGGCACACGCTGGGCCC-CGGTACGGGCGGTTGCC
* * * **
14047141 TTGAGCACCATCAGCACACGCTGGGCCCTAGTACGGGC
1 TCGATCACCATCGGCACACGCTGGGCCCCGGTACGGGC
14047179 TGTACGGGCG
Statistics
Matches: 182, Mismatches: 32, Indels: 8
0.82 0.14 0.04
Matches are distributed among these distances:
44 5 0.03
45 171 0.94
46 6 0.03
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.19
Consensus pattern (45 bp):
TCGATCACCATCGGCACACGCTGGGCCCCGGTACGGGCGGTTGCC
Found at i:14047078 original size:90 final size:90
Alignment explanation
Indices: 14046916--14047213 Score: 281
Period size: 90 Copynumber: 3.2 Consensus size: 90
14046906 CACACATTGG
* * * ** * * * *
14046916 TCGATCACCATCGGCATACGTTGGGCCCCGGTACGGGTGGTTGCCTTGATCACCATCGGCACATG
1 TCGAACACCATCGGCACACGCTGGGCCTTGGTGCGGGCGGTTGCCTTGATCACCATCAGCACACG
* *
14046981 CTGGGCCCCGGTGAGGGCGGTTGCC
66 CTAGGCCCCGGTGAGGGCGGTTACC
* *
14047006 TCGAACACCATCGGCACACGCTGGGCCTTGGTGCTGGCGGTTGCCTCGATCACCATCAGCACACG
1 TCGAACACCATCGGCACACGCTGGGCCTTGGTGCGGGCGGTTGCCTTGATCACCATCAGCACACG
* * * *
14047071 TTAGGCCCTGGTGCGGTCGGTTACC
66 CTAGGCCCCGGTGAGGGCGGTTACC
* * * * * * *
14047096 TCAAACACCATCAGCACACGCTGGCCCTTAGTGCGGGCAGCTGCCTTGAGCACCATCAGCACACG
1 TCGAACACCATCGGCACACGCTGGGCCTTGGTGCGGGCGGTTGCCTTGATCACCATCAGCACACG
*
14047161 CTGGGCCCTAGTACGGGCTGTACGGGCGGTTACC
66 CTAGGCCC-----C-GG-TG-A-GGGCGGTTACC
*
14047195 TCGAGCACCATCGGCACAC
1 TCGAACACCATCGGCACAC
14047214 ACTAGTCAAT
Statistics
Matches: 165, Mismatches: 34, Indels: 9
0.79 0.16 0.04
Matches are distributed among these distances:
90 135 0.82
96 2 0.01
97 2 0.01
99 26 0.16
ACGTcount: A:0.17, C:0.34, G:0.30, T:0.19
Consensus pattern (90 bp):
TCGAACACCATCGGCACACGCTGGGCCTTGGTGCGGGCGGTTGCCTTGATCACCATCAGCACACG
CTAGGCCCCGGTGAGGGCGGTTACC
Found at i:14047303 original size:45 final size:44
Alignment explanation
Indices: 14047245--14047410 Score: 147
Period size: 45 Copynumber: 3.7 Consensus size: 44
14047235 AACATTGGGC
* * *
14047245 CCTGGTGCGGGCAGTTACCTCGAGCACCATTGGCACACAATTGGA
1 CCTGGTGCGGGCAGTTACCTCGAACACCATCGGCACAC-ACTGGA
* *
14047290 CCTGGTGCGGGCAGTTACCT-GAAACACCATCGGCTCACACTGGG
1 CCTGGTGCGGGCAGTTACCTCG-AACACCATCGGCACACACTGGA
* * * * ** *
14047334 CCTTGGTGCGGGTAGTTGCCTCGATCACCATCGACACATGCTGGGC
1 CC-TGGTGCGGGCAGTTACCTCGAACACCATCGGCACACACT-GGA
* *
14047380 CCTGGTGCGGG-AGGTTGCCTCGACCACCATC
1 CCTGGTGCGGGCA-GTTACCTCGAACACCATC
14047411 AGCAGAAGAT
Statistics
Matches: 102, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
44 8 0.08
45 89 0.87
46 5 0.05
ACGTcount: A:0.18, C:0.31, G:0.30, T:0.20
Consensus pattern (44 bp):
CCTGGTGCGGGCAGTTACCTCGAACACCATCGGCACACACTGGA
Found at i:14047410 original size:303 final size:303
Alignment explanation
Indices: 14046843--14047414 Score: 734
Period size: 303 Copynumber: 1.9 Consensus size: 303
14046833 TTGCCTCTAT
* * **
14046843 CACCATCGGCACACGTTGGGCCCTAGTGTGGGCGGTACGGGCGGTTACCTCGAGCACCATCGGCA
1 CACCATCAGCACACGCTGGGCCCTAGTACGGGCGGTACGGGCGGTTACCTCGAGCACCATCGGCA
* * * * * * ** * * *
14046908 CACATTGGTCGATCACCATCGGCATACGTTGGGCCCCGGTACGGGTGGTTGCCTTGATCACCATC
66 CACACTAGTCAATCACCATCGACAAACATTGGGCCCCGGTACGGGCAGTTACCTCGAGCACCATC
*** * * * *
14046973 GGCACATGCTGGGCCCCGGTGAGGGCGGTTGCCTCGAACACCATCGGCACACGCTGGGCCTTGGT
131 GGCACACAATGGGACCCGGTGAGGGCAGTTACCTCGAACACCATCGGCACACACTGGGCCTTGGT
* * * **
14047038 GCTGGCGGTTGCCTCGATCACCATCAGCACACGTTAGGCCCTGGTGCGGTCGGTTACCTCAAACA
196 GCGGGCAGTTGCCTCGATCACCATCAGCACACGCTAGGCCCTGGTGCGGGAGGTTACCTCAAACA
14047103 CCATCAGCACACGCTGGCCCTTAGTGCGGGCAGCTGCCTTGAG
261 CCATCAGCACACGCTGGCCCTTAGTGCGGGCAGCTGCCTTGAG
*
14047146 CACCATCAGCACACGCTGGGCCCTAGTACGGGCTGTACGGGCGGTTACCTCGAGCACCATCGGCA
1 CACCATCAGCACACGCTGGGCCCTAGTACGGGCGGTACGGGCGGTTACCTCGAGCACCATCGGCA
* * * *
14047211 CACACTAGTCAATCATCATCGACAAACATTGGGCCCTGGTGCGGGCAGTTACCTCGAGCACCATT
66 CACACTAGTCAATCACCATCGACAAACATTGGGCCCCGGTACGGGCAGTTACCTCGAGCACCATC
* * * *
14047276 GGCACACAATTGGACCTGGTGCGGGCAGTTACCT-GAAACACCATCGGCTCACACTGGGCCTTGG
131 GGCACACAATGGGACCCGGTGAGGGCAGTTACCTCG-AACACCATCGGCACACACTGGGCCTTGG
* * * * * *
14047340 TGCGGGTAGTTGCCTCGATCACCATC-GACACATGCTGGGCCCTGGTGCGGGAGGTTGCCTCGAC
195 TGCGGGCAGTTGCCTCGATCACCATCAG-CACACGCTAGGCCCTGGTGCGGGAGGTTACCTCAAA
14047404 CACCATCAGCA
259 CACCATCAGCA
14047415 GAAGATGGCC
Statistics
Matches: 225, Mismatches: 42, Indels: 4
0.83 0.15 0.01
Matches are distributed among these distances:
302 2 0.01
303 223 0.99
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (303 bp):
CACCATCAGCACACGCTGGGCCCTAGTACGGGCGGTACGGGCGGTTACCTCGAGCACCATCGGCA
CACACTAGTCAATCACCATCGACAAACATTGGGCCCCGGTACGGGCAGTTACCTCGAGCACCATC
GGCACACAATGGGACCCGGTGAGGGCAGTTACCTCGAACACCATCGGCACACACTGGGCCTTGGT
GCGGGCAGTTGCCTCGATCACCATCAGCACACGCTAGGCCCTGGTGCGGGAGGTTACCTCAAACA
CCATCAGCACACGCTGGCCCTTAGTGCGGGCAGCTGCCTTGAG
Done.