Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 70 of 195
Found at i:14047428 original size:45 final size:45
Alignment explanation
Indices: 14047337--14048409 Score: 167
Period size: 45 Copynumber: 24.1 Consensus size: 45
14047327 CACTGGGCCT
* * * *
14047337 TGGTGCGGGTA-GTTGCCTCGATCACCATCGACACATGCTGGGCCC
1 TGGTGCGGG-AGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
*
14047382 TGGTGCGGGAGGTTGCCTCGACCACCATC-AGCAGAAGATGGCCCC
1 TGGTGCGGGAGGTTGCCTCGACCACCATCGA-CACAAGATGGCCCC
* * * * * * * * *
14047427 TGGTGTGGGCGGTTGCGC-CAAACACCATTGGCACATGTTGGGCCC
1 TGGTGCGGGAGGTTGC-CTCGACCACCATCGACACAAGATGGCCCC
* * * ** * * *
14047472 TGGTGC-GAACGGTTGCCTCAAACACCATCGACACCTGCTGGGCCT
1 TGGTGCGGGA-GGTTGCCTCGACCACCATCGACACAAGATGGCCCC
* * * * * *** *
14047517 TAGTGCGAGAGGTTACCTTGAGCACCATCGACACAACCCGGCCCT
1 TGGTGCGGGAGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
*** * * * * * *
14047562 TGGTGCGGGCTCTTACCCCGACCACTAAT-GCCAAAAGATGGCACC
1 TGGTGCGGGAGGTTGCCTCGACCAC-CATCGACACAAGATGGCCCC
* * * * * * * * *
14047607 TGGTGC-GAACGGTTACGTCGAACACCATCGGCATACGCTGGGCCC
1 TGGTGCGGGA-GGTTGCCTCGACCACCATCGACACAAGATGGCCCC
* * * * *
14047652 TGGTACGTGTGGTTGCCTCGA--A-CAT-G-----A-TTGG-CAC
1 TGGTGCGGGAGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
** * * * * * *
14047686 AAGTGC-GAACGGTTACCTCGAGCACCATCGGCACACA-TTGGGCCC
1 TGGTGCGGGA-GGTTGCCTCGACCACCATCGACACA-AGATGGCCCC
* * * * * **
14047731 TGGTGCGGGCGGTTGCCTCGAGCACCATTGGCACACA-ACGGGACC
1 TGGTGCGGGAGGTTGCCTCGACCACCATCGACACA-AGATGGCCCC
* * * * * *
14047776 TGGTGCGGGTA-GTTGCCTCAAACACCATCGGCATACA-CTGGGCCC
1 TGGTGCGGG-AGGTTGCCTCGACCACCATCGACACA-AGATGGCCCC
* * * * * *
14047821 TGGTGCGGGCA-GTTGCCTCGATCACCATTGGCACACGTTGGGCCC
1 TGGTGCGGG-AGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
* * * ** *
14047866 TGGTGTGGGCGGTTGCCTCGACCACCACCGGTAGAAGATGGCCCC
1 TGGTGCGGGAGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
* * * * * * * * * *
14047911 TGGTACGGGCGGTTGTGC-CAAACACCATTGGCACATGCTGGGCCC
1 TGGTGCGGGAGGTTG-CCTCGACCACCATCGACACAAGATGGCCCC
* * * * * * * *
14047956 TAGTGC-GAACGGTTACCTCGAACACCATCGGCACTTA-CT-GCACCT
1 TGGTGCGGGA-GGTTGCCTCGACCACCATCGACAC-AAGATGGC-CCC
* * * * * * ** * *
14048001 TAGTGCGAGAGGTTACCTTGAGCACCATCGGCACAAGCCGACCCT
1 TGGTGCGGGAGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
*** * * * * * *
14048046 TGGTGCGGGCTCTTACCCCGACCACCATTGGCAAAAGATGGCACC
1 TGGTGCGGGAGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
* * * * * * *
14048091 TGGTGC-GAACGGTTACGTCGAACACCATCGACATACGCTGGGCCCC
1 TGGTGCGGGA-GGTTGCCTCGACCACCATCGACACAAGAT-GGCCCC
* * * * * * * * * *
14048137 -GGTACGCGTGGTTGCCTCGAACACGATTGGCACACGTTGGGCCC
1 TGGTGCGGGAGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
* ** * *
14048181 TGGTGTGGTCGGTTGCCTCGAGCACCATCGACAGAAGATGGCCCC
1 TGGTGCGGGAGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
* * * * * *
14048226 TGGTACGAGCA-GTTGCCTCGAACACCATCGACACACGCTGGGCCC
1 TGGTGCG-GGAGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
* * * * * * *
14048271 TTGTGCGGGCA-GTTGGCTCGATCACAATCGACACACA-CTGGGCCT
1 TGGTGCGGG-AGGTTGCCTCGACCACCATCGACACA-AGATGGCCCC
* * * * * ** *
14048316 TGGTGCAGGCGGTTACCTCGACCACCATCGCCATAAGCCGGCCCT
1 TGGTGCGGGAGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
* *** * * *
14048361 TGGAGCGGGCTCTTGCCTCGACCACCATCGATAGAAGACGGCCCC
1 TGGTGCGGGAGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
14048406 TGGT
1 TGGT
14048410 ATAGGCGGTT
Statistics
Matches: 745, Mismatches: 239, Indels: 88
0.69 0.22 0.08
Matches are distributed among these distances:
34 15 0.02
35 3 0.00
36 1 0.00
37 3 0.00
38 1 0.00
41 1 0.00
42 3 0.00
43 1 0.00
44 24 0.03
45 679 0.91
46 14 0.02
ACGTcount: A:0.20, C:0.31, G:0.30, T:0.19
Consensus pattern (45 bp):
TGGTGCGGGAGGTTGCCTCGACCACCATCGACACAAGATGGCCCC
Found at i:14047431 original size:90 final size:90
Alignment explanation
Indices: 14047337--14047500 Score: 197
Period size: 90 Copynumber: 1.8 Consensus size: 90
14047327 CACTGGGCCT
* * * *
14047337 TGGTGCGGGTAGTTGC-CTCGATCACCATCGACACATGCTGGGCCCTGGTGCGGGA-GGTTGCCT
1 TGGTGCGGGCAGTTGCGC-CAAACACCATCGACACATGCTGGGCCCTGGTGC-GAACGGTTGCCT
* *
14047400 CGACCACCATCAGCAGAAGATGGCCCC
64 CAAACACCATCAGCAGAAGATGGCCCC
* * * * *
14047427 TGGTGTGGGCGGTTGCGCCAAACACCATTGGCACATGTTGGGCCCTGGTGCGAACGGTTGCCTCA
1 TGGTGCGGGCAGTTGCGCCAAACACCATCGACACATGCTGGGCCCTGGTGCGAACGGTTGCCTCA
14047492 AACACCATC
66 AACACCATC
14047501 GACACCTGCT
Statistics
Matches: 61, Mismatches: 11, Indels: 4
0.80 0.14 0.05
Matches are distributed among these distances:
89 2 0.03
90 58 0.95
91 1 0.02
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.20
Consensus pattern (90 bp):
TGGTGCGGGCAGTTGCGCCAAACACCATCGACACATGCTGGGCCCTGGTGCGAACGGTTGCCTCA
AACACCATCAGCAGAAGATGGCCCC
Found at i:14047471 original size:303 final size:303
Alignment explanation
Indices: 14046834--14047472 Score: 717
Period size: 303 Copynumber: 2.1 Consensus size: 303
14046824 TATGGGCGAT
* * **
14046834 TGCCTCTATCACCATCGGCACACGTTGGGCCCTAGTGTGGGCGGTACGGGCGGTTACCTCGAGCA
1 TGCCTCAAACACCATCGGCACACGTTGGGCCCTAGTACGGGCGGTACGGGCGGTTACCTCGAGCA
* * * * * * ** * *
14046899 CCATCGGCACACATTGGTCGATCACCATCGGCATACGTTGGGCCCCGGTACGGGTGGTTGCCTTG
66 CCATCGGCACACACTAGTCAATCACCATCGACAAACATTGGGCCCCGGTACGGGCAGTTACCTCG
* *** * * * *
14046964 ATCACCATCGGCACATGCTGGGCCCCGGTGAGGGCGGTTGCCTCGAACACCATCGGCACACGCTG
131 AGCACCATCGGCACACAATGGGACCCGGTGAGGGCAGTTACCTCGAACACCATCGGCACACACTG
* * * **
14047029 GGCCTTGGTGCTGGCGGTTGCCTCGATCACCATCAGCACACGTTAGGCCCTGGTGCGGTCGGTTA
196 GGCCTTGGTGCGGGCAGTTGCCTCGATCACCATCAGCACACGCTAGGCCCTGGTGCGGGAGGTTA
* * *
14047094 CCTCAAACACCATCAGCACACGCTGGCCCTTAGTGCGGGCAGC
261 CCTCAAACACCATCAGCACAAGATGGCCCCTAGTGCGGGCAGC
** * * * *
14047137 TGCCTTGAGCACCATCAGCACACGCTGGGCCCTAGTACGGGCTGTACGGGCGGTTACCTCGAGCA
1 TGCCTCAAACACCATCGGCACACGTTGGGCCCTAGTACGGGCGGTACGGGCGGTTACCTCGAGCA
* * *
14047202 CCATCGGCACACACTAGTCAATCATCATCGACAAACATTGGGCCCTGGTGCGGGCAGTTACCTCG
66 CCATCGGCACACACTAGTCAATCACCATCGACAAACATTGGGCCCCGGTACGGGCAGTTACCTCG
* * * * *
14047267 AGCACCATTGGCACACAATTGGACCTGGTGCGGGCAGTTACCT-GAAACACCATCGGCTCACACT
131 AGCACCATCGGCACACAATGGGACCCGGTGAGGGCAGTTACCTCG-AACACCATCGGCACACACT
* * *
14047331 GGGCCTTGGTGCGGGTAGTTGCCTCGATCACCATC-GACACATGCTGGGCCCTGGTGCGGGAGGT
195 GGGCCTTGGTGCGGGCAGTTGCCTCGATCACCATCAG-CACACGCTAGGCCCTGGTGCGGGAGGT
* * * * * * * *
14047395 TGCCTCGACCACCATCAGCAGAAGATGGCCCCTGGTGTGGGCGGT
259 TACCTCAAACACCATCAGCACAAGATGGCCCCTAGTGCGGGCAGC
* *
14047440 TGCGC-CAAACACCATTGGCACATGTTGGGCCCT
1 TGC-CTCAAACACCATCGGCACACGTTGGGCCCT
14047473 GGTGCGAACG
Statistics
Matches: 273, Mismatches: 60, Indels: 6
0.81 0.18 0.02
Matches are distributed among these distances:
302 2 0.01
303 270 0.99
304 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (303 bp):
TGCCTCAAACACCATCGGCACACGTTGGGCCCTAGTACGGGCGGTACGGGCGGTTACCTCGAGCA
CCATCGGCACACACTAGTCAATCACCATCGACAAACATTGGGCCCCGGTACGGGCAGTTACCTCG
AGCACCATCGGCACACAATGGGACCCGGTGAGGGCAGTTACCTCGAACACCATCGGCACACACTG
GGCCTTGGTGCGGGCAGTTGCCTCGATCACCATCAGCACACGCTAGGCCCTGGTGCGGGAGGTTA
CCTCAAACACCATCAGCACAAGATGGCCCCTAGTGCGGGCAGC
Found at i:14047745 original size:79 final size:79
Alignment explanation
Indices: 14047609--14047855 Score: 215
Period size: 79 Copynumber: 3.0 Consensus size: 79
14047599 ATGGCACCTG
* * * * *
14047609 GTGCGAACGGTTACGTCGAACACCATCGGCATACGCTGGGCCCTGGTACGTGTGGTTGCCTCGAA
1 GTGCGAACGGTTACCTCGAACACCATCGGCACACACTGGGCCCTGGTACGGGCGGTTGCCTCGAA
**
14047674 CATGATTGGCACAA
66 CACCATTGGCACAA
* * * *
14047688 GTGCGAACGGTTACCTCGAGCACCATCGGCACACATTGGGCCCTGGTGCGGGCGGTTGCCTCGAG
1 GTGCGAACGGTTACCTCGAACACCATCGGCACACACTGGGCCCTGGTACGGGCGGTTGCCTCGAA
14047753 CACCATTGGCACACAA
66 CACCATTGG--CACAA
* ** * * * * *
14047769 CGGGACCTGGTGCGGGTAGTTGCCTCAAACACCATCGGCATACACTGGGCCCTGGTGCGGGCAGT
1 -GTG--C--GAAC--G--GTTACCTCGAACACCATCGGCACACACTGGGCCCTGGTACGGGCGGT
*
14047834 TGCCTCGATCACCATTGGCACA
57 TGCCTCGAACACCATTGGCACA
14047856 CGTTGGGCCC
Statistics
Matches: 136, Mismatches: 21, Indels: 13
0.80 0.12 0.08
Matches are distributed among these distances:
79 63 0.46
81 5 0.04
82 2 0.01
84 1 0.01
86 2 0.01
88 5 0.04
90 58 0.43
ACGTcount: A:0.20, C:0.30, G:0.31, T:0.19
Consensus pattern (79 bp):
GTGCGAACGGTTACCTCGAACACCATCGGCACACACTGGGCCCTGGTACGGGCGGTTGCCTCGAA
CACCATTGGCACAA
Found at i:14047828 original size:484 final size:484
Alignment explanation
Indices: 14047227--14048170 Score: 1494
Period size: 484 Copynumber: 2.0 Consensus size: 484
14047217 AGTCAATCAT
**
14047227 CATCGACAAACATTGGGCCCTGGTGCGGGCAGTTACCTCGAGCACCATTGGCACACAATTGGACC
1 CATCGACAAACATTGGGCCCTGGTGCGGGCAGTTACCTCGAGCACCATTGGCACACAACGGGACC
* * *
14047292 TGGTGCGGGCAGTTACCTGAAACACCATCGGCTCACACTGGGCCTTGGTGCGGGTAGTTGCCTCG
66 TGGTGCGGGCAGTTACCTCAAACACCATCGGCTCACACTGGGCCCTGGTGCGGGCAGTTGCCTCG
* *
14047357 ATCACCATCGACACATGCTGGGCCCTGGTGCGGGAGGTTGCCTCGACCACCATCAGCAGAAGATG
131 ATCACCATCGACACACGCTGGGCCCTGGTGCGGGAGGTTGCCTCGACCACCACCAGCAGAAGATG
** * * *
14047422 GCCCCTGGTGTGGGCGGTTGCGCCAAACACCATTGGCACATGTTGGGCCCTGGTGCGAACGGTTG
196 GCCCCTGGTACGGGCGGTTGCGCCAAACACCATTGGCACATGCTGGGCCCTAGTGCGAACGGTTA
* **
14047487 CCTCAAACACCATCGACACCTGCTGGGCCTTAGTGCGAGAGGTTACCTTGAGCACCATCGACACA
261 CCTCAAACACCATCGACACCTACTGCACCTTAGTGCGAGAGGTTACCTTGAGCACCATCGACACA
* *
14047552 ACCCGGCCCTTGGTGCGGGCTCTTACCCCGACCACTAATGCCAAAAGATGGCACCTGGTGCGAAC
326 ACCCGACCCTTGGTGCGGGCTCTTACCCCGACCACCAATGCCAAAAGATGGCACCTGGTGCGAAC
* * * *
14047617 GGTTACGTCGAACACCATCGGCATACGCTGGGCCCTGGTACGTGTGGTTGCCTCGAACATGATTG
391 GGTTACGTCGAACACCATCGACATACGCTGGGCCCCGGTACGCGTGGTTGCCTCGAACACGATTG
14047682 GCACAAGTGCGAACGGTTACCTCGAGCAC
456 GCACAAGTGCGAACGGTTACCTCGAGCAC
* * * *
14047711 CATCGGCACACATTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATTGGCACACAACGGGACC
1 CATCGACAAACATTGGGCCCTGGTGCGGGCAGTTACCTCGAGCACCATTGGCACACAACGGGACC
* *
14047776 TGGTGCGGGTAGTTGCCTCAAACACCATCGGCAT-ACACTGGGCCCTGGTGCGGGCAGTTGCCTC
66 TGGTGCGGGCAGTTACCTCAAACACCATCGGC-TCACACTGGGCCCTGGTGCGGGCAGTTGCCTC
* * * * * * *
14047840 GATCACCATTGGCACACGTTGGGCCCTGGTGTGGGCGGTTGCCTCGACCACCACCGGTAGAAGAT
130 GATCACCATCGACACACGCTGGGCCCTGGTGCGGGAGGTTGCCTCGACCACCACCAGCAGAAGAT
*
14047905 GGCCCCTGGTACGGGCGGTTGTGCCAAACACCATTGGCACATGCTGGGCCCTAGTGCGAACGGTT
195 GGCCCCTGGTACGGGCGGTTGCGCCAAACACCATTGGCACATGCTGGGCCCTAGTGCGAACGGTT
* * * *
14047970 ACCTCGAACACCATCGGCACTTACTGCACCTTAGTGCGAGAGGTTACCTTGAGCACCATCGGCAC
260 ACCTCAAACACCATCGACACCTACTGCACCTTAGTGCGAGAGGTTACCTTGAGCACCATCGACAC
* * *
14048035 AAGCCGACCCTTGGTGCGGGCTCTTACCCCGACCACCATTGGCAAAAGATGGCACCTGGTGCGAA
325 AACCCGACCCTTGGTGCGGGCTCTTACCCCGACCACCAATGCCAAAAGATGGCACCTGGTGCGAA
14048100 CGGTTACGTCGAACACCATCGACATACGCTGGGCCCCGGTACGCGTGGTTGCCTCGAACACGATT
390 CGGTTACGTCGAACACCATCGACATACGCTGGGCCCCGGTACGCGTGGTTGCCTCGAACACGATT
14048165 GGCACA
455 GGCACA
14048171 CGTTGGGCCC
Statistics
Matches: 417, Mismatches: 42, Indels: 2
0.90 0.09 0.00
Matches are distributed among these distances:
484 416 1.00
485 1 0.00
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.19
Consensus pattern (484 bp):
CATCGACAAACATTGGGCCCTGGTGCGGGCAGTTACCTCGAGCACCATTGGCACACAACGGGACC
TGGTGCGGGCAGTTACCTCAAACACCATCGGCTCACACTGGGCCCTGGTGCGGGCAGTTGCCTCG
ATCACCATCGACACACGCTGGGCCCTGGTGCGGGAGGTTGCCTCGACCACCACCAGCAGAAGATG
GCCCCTGGTACGGGCGGTTGCGCCAAACACCATTGGCACATGCTGGGCCCTAGTGCGAACGGTTA
CCTCAAACACCATCGACACCTACTGCACCTTAGTGCGAGAGGTTACCTTGAGCACCATCGACACA
ACCCGACCCTTGGTGCGGGCTCTTACCCCGACCACCAATGCCAAAAGATGGCACCTGGTGCGAAC
GGTTACGTCGAACACCATCGACATACGCTGGGCCCCGGTACGCGTGGTTGCCTCGAACACGATTG
GCACAAGTGCGAACGGTTACCTCGAGCAC
Found at i:14047892 original size:90 final size:90
Alignment explanation
Indices: 14047695--14048345 Score: 264
Period size: 90 Copynumber: 7.2 Consensus size: 90
14047685 CAAGTGCGAA
* * * *
14047695 CGGTTACCTCGAGCACCATCGGCACACATTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATT
1 CGGTTGCCTCGAACACCATCGGCACACACTGGGCCCTGGTGCGGGCAGTTGCCTCGAGCACCATT
14047760 GGCACACAACGGGACCTGGTGCGGG
66 GGCACACAACGGGACCTGGTGCGGG
** * * *
14047785 TAGTTGCCTCAAACACCATCGGCATACACTGGGCCCTGGTGCGGGCAGTTGCCTCGATCACCATT
1 CGGTTGCCTCGAACACCATCGGCACACACTGGGCCCTGGTGCGGGCAGTTGCCTCGAGCACCATT
*** * *
14047850 GGCACACGTTGGGCCCTGGTGTGGG
66 GGCACACAACGGGACCTGGTGCGGG
* * * * * * * * * * *
14047875 CGGTTGCCTCGACCACCACCGGTAGA-AGATGGCCCCTGGTACGGGCGGTTGTGC-CAAACACCA
1 CGGTTGCCTCGAACACCATCGGCACACA-CTGGGCCCTGGTGCGGGCAGTTG-CCTCGAGCACCA
** * * **
14047938 TTGGCACA-TGCTGGGCCCTAGTGCGAA
64 TTGGCACACAAC-GGGACCTGGTGCGGG
* ** ** * * * * *
14047965 CGGTTACCTCGAACACCATCGGCACTTACTGCACCTTAGTGCGAG-AGGTTACCTTGAGCACCAT
1 CGGTTGCCTCGAACACCATCGGCACACACTGGGCCCTGGTGCGGGCA-GTTGCCTCGAGCACCAT
* * *
14048029 CGGCACA-AGC-CGACCCTTGGTGCGGG
65 TGGCACACAACGGGA-CC-TGGTGCGGG
** * * * * * * ** * * * *
14048055 CTCTTACCCCGACCACCATTGGCA-AAAGAT-GGCACCTGGTGCGAACGGTTACGTCGAACACCA
1 CGGTTGCCTCGAACACCATCGGCACACA-CTGGGC-CCTGGTGCGGGCAGTTGCCTCGAGCACCA
* * * * * * * *
14048118 TCGACATAC-GCTGGGCCCCGGTACGCG
64 TTGGCACACAAC-GGGACCTGGTGCGGG
* * * ** * * * *
14048145 TGGTTGCCTCGAACACGATTGGCACACGTTGGGCCCTGGTGTGGTCGGTTGCCTCGAGCACCATC
1 CGGTTGCCTCGAACACCATCGGCACACACTGGGCCCTGGTGCGGGCAGTTGCCTCGAGCACCATT
* * * ** * *
14048210 GACAGA-AGATGGCCCCTGGTACGAG
66 GGCACACA-ACGGGACCTGGTGCGGG
* * * * * * * *
14048235 CAGTTGCCTCGAACACCATCGACACACGCTGGGCCCTTGTGCGGGCAGTTGGCTCGATCACAATC
1 CGGTTGCCTCGAACACCATCGGCACACACTGGGCCCTGGTGCGGGCAGTTGCCTCGAGCACCATT
* *
14048300 GACACAC-ACTGGG-CCTTGGTGCAGG
66 GGCACACAAC-GGGACC-TGGTGCGGG
* *
14048325 CGGTTACCTCGACCACCATCG
1 CGGTTGCCTCGAACACCATCG
14048346 CCATAAGCCG
Statistics
Matches: 411, Mismatches: 129, Indels: 42
0.71 0.22 0.07
Matches are distributed among these distances:
88 1 0.00
89 9 0.02
90 392 0.95
91 8 0.02
92 1 0.00
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (90 bp):
CGGTTGCCTCGAACACCATCGGCACACACTGGGCCCTGGTGCGGGCAGTTGCCTCGAGCACCATT
GGCACACAACGGGACCTGGTGCGGG
Found at i:14047933 original size:135 final size:135
Alignment explanation
Indices: 14047687--14047989 Score: 331
Period size: 135 Copynumber: 2.2 Consensus size: 135
14047677 GATTGGCACA
* *
14047687 AGTGCGAACGGTTACCTCGAGCACCATCGGCACACATTGGGCCCTGGTGCGGGCGGTTGCCTCGA
1 AGTGCGAACAGTTACCTCGAACACCATCGGCACACATTGGGCCCTGGTGCGGGCGGTTGCCTCGA
* ** * * * *
14047752 GCACCATTGGCACACAACGGGACCTGGTGCGGGTAGTTGCCTCAAACACCATCGGCATACACTGG
66 CCACCACCGGCACACAACGGCACCTGGTACGGGCAGTTGCCTCAAACACCATCGGCACACACTGG
14047817 GCCCT
131 GCCCT
* ** * * * * *
14047822 GGTGCGGGCAGTTGCCTCGATCACCATTGGCACACGTTGGGCCCTGGTGTGGGCGGTTGCCTCGA
1 AGTGCGAACAGTTACCTCGAACACCATCGGCACACATTGGGCCCTGGTGCGGGCGGTTGCCTCGA
* * * * * * * **
14047887 CCACCACCGGTAGA-AGATGGCCCCTGGTACGGGCGGTTGTGC-CAAACACCATTGGCACATGCT
66 CCACCACCGGCACACA-ACGGCACCTGGTACGGGCAGTTG-CCTCAAACACCATCGGCACACACT
14047950 GGGCCCT
129 GGGCCCT
*
14047957 AGTGCGAACGGTTACCTCGAACACCATCGGCAC
1 AGTGCGAACAGTTACCTCGAACACCATCGGCAC
14047990 TTACTGCACC
Statistics
Matches: 134, Mismatches: 32, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
134 1 0.01
135 132 0.99
136 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.18
Consensus pattern (135 bp):
AGTGCGAACAGTTACCTCGAACACCATCGGCACACATTGGGCCCTGGTGCGGGCGGTTGCCTCGA
CCACCACCGGCACACAACGGCACCTGGTACGGGCAGTTGCCTCAAACACCATCGGCACACACTGG
GCCCT
Found at i:14048291 original size:135 final size:135
Alignment explanation
Indices: 14048058--14048345 Score: 308
Period size: 135 Copynumber: 2.1 Consensus size: 135
14048048 GTGCGGGCTC
* * * * * * *
14048058 TTACCCCGACCACCATTGGCAAAAGATGGCACCTGGTGCGAACGGTTACGTCGAACACCATCGAC
1 TTACCTCGACCACCATCGACAGAAGATGGCACCTGGTACGAACAGTTACCTCGAACACCATCGAC
* ** * * * ** *
14048123 ATACGCTGGGCCCCGGTACGCGTGGTTGCCTCGAACACGATTGGCACACGTTGGGCCCTGGTG-T
66 ACACGCTGGGCCCCGGTACGCGCAGTTGCCTCGAACACAATCGACACACACTGGGCCCTGGTGCA
14048187 GGTCGG
131 GG-CGG
* * * * *
14048193 TTGCCTCGAGCACCATCGACAGAAGATGGCCCCTGGTACGAGCAGTTGCCTCGAACACCATCGAC
1 TTACCTCGACCACCATCGACAGAAGATGGCACCTGGTACGAACAGTTACCTCGAACACCATCGAC
** * * * * *
14048258 ACACGCTGGGCCCTTGTGCGGGCAGTTGGCTCGATCACAATCGACACACACTGGGCCTTGGTGCA
66 ACACGCTGGGCCCCGGTACGCGCAGTTGCCTCGAACACAATCGACACACACTGGGCCCTGGTGCA
14048323 GGCGG
131 GGCGG
14048328 TTACCTCGACCACCATCG
1 TTACCTCGACCACCATCG
14048346 CCATAAGCCG
Statistics
Matches: 122, Mismatches: 30, Indels: 2
0.79 0.19 0.01
Matches are distributed among these distances:
135 120 0.98
136 2 0.02
ACGTcount: A:0.20, C:0.32, G:0.29, T:0.19
Consensus pattern (135 bp):
TTACCTCGACCACCATCGACAGAAGATGGCACCTGGTACGAACAGTTACCTCGAACACCATCGAC
ACACGCTGGGCCCCGGTACGCGCAGTTGCCTCGAACACAATCGACACACACTGGGCCCTGGTGCA
GGCGG
Found at i:14048359 original size:135 final size:135
Alignment explanation
Indices: 14048108--14048391 Score: 293
Period size: 135 Copynumber: 2.1 Consensus size: 135
14048098 AACGGTTACG
* ** * * * *
14048108 TCGAACACCATCGACATACGCTGGGCCCCGGTACGCGTGGTTGCCTCGAACACGATTGGCACACG
1 TCGAACACCATCGACACACGCTGGGCCCCGGTACGCGCAGTTGCCTCGAACACAATCGACACACA
* * * * *
14048173 TTGGGCCCTGGTGTGGTCGGTTGCCTCGAGCACCATCGACAGAAGATGGCCCCTGGTA-CGAGCA
66 CTGGGCCCTGGTGAGGTCGGTTACCTCGACCACCATCGACAGAAGACGGCCCCTGG-AGCGAGCA
*
14048237 GTTGCC
130 CTTGCC
** * * * *
14048243 TCGAACACCATCGACACACGCTGGGCCCTTGTGCGGGCAGTTGGCTCGATCACAATCGACACACA
1 TCGAACACCATCGACACACGCTGGGCCCCGGTACGCGCAGTTGCCTCGAACACAATCGACACACA
* * * * * * *
14048308 CTGGGCCTTGGTGCAGG-CGGTTACCTCGACCACCATCGCCATAAGCCGGCCCTTGGAGCGGGCT
66 CTGGGCCCTGGTG-AGGTCGGTTACCTCGACCACCATCGACAGAAGACGGCCCCTGGAGCGAGCA
14048372 CTTGCC
130 CTTGCC
*
14048378 TCGACCACCATCGA
1 TCGAACACCATCGA
14048392 TAGAAGACGG
Statistics
Matches: 120, Mismatches: 27, Indels: 4
0.79 0.18 0.03
Matches are distributed among these distances:
134 1 0.01
135 117 0.98
136 2 0.02
ACGTcount: A:0.19, C:0.33, G:0.29, T:0.19
Consensus pattern (135 bp):
TCGAACACCATCGACACACGCTGGGCCCCGGTACGCGCAGTTGCCTCGAACACAATCGACACACA
CTGGGCCCTGGTGAGGTCGGTTACCTCGACCACCATCGACAGAAGACGGCCCCTGGAGCGAGCAC
TTGCC
Found at i:14048477 original size:45 final size:45
Alignment explanation
Indices: 14048193--14048485 Score: 178
Period size: 45 Copynumber: 6.5 Consensus size: 45
14048183 GTGTGGTCGG
* * ** * * **
14048193 TTGCCTCGAGCACCATCGACAGAAGATGGCCCCTGGTACGAGCAG
1 TTGCCTCGACCACCATCGACACAAGCCGGCCCTTGGTACGGGCTC
* * * * **
14048238 TTGCCTCGAACACCATCGACACACGCTGGGCCCTT-GTGCGGGCAG
1 TTGCCTCGACCACCATCGACACAAGC-CGGCCCTTGGTACGGGCTC
* * * * * * * **
14048283 TTGGCTCGATCACAATCGACACACA-CTGGGCCTTGGTGCAGGCGG
1 TTGCCTCGACCACCATCGACACA-AGCCGGCCCTTGGTACGGGCTC
* * *
14048328 TTACCTCGACCACCATCGCCATAAGCCGGCCCTTGG-AGCGGGCTC
1 TTGCCTCGACCACCATCGACACAAGCCGGCCCTTGGTA-CGGGCTC
* * * * ** **
14048373 TTGCCTCGACCACCATCGATAGAAGACGGCCCCTGGTATAGGCGG
1 TTGCCTCGACCACCATCGACACAAGCCGGCCCTTGGTACGGGCTC
*** * * *
14048418 TTAAGTCGAACACCATCGGCACATGCCGGCCCTTGGTACGGGCTC
1 TTGCCTCGACCACCATCGACACAAGCCGGCCCTTGGTACGGGCTC
14048463 TTGCCTCGACCACCATCGACACA
1 TTGCCTCGACCACCATCGACACA
14048486 CGTTGGGCCC
Statistics
Matches: 185, Mismatches: 57, Indels: 12
0.73 0.22 0.05
Matches are distributed among these distances:
44 7 0.04
45 171 0.92
46 7 0.04
ACGTcount: A:0.21, C:0.34, G:0.27, T:0.18
Consensus pattern (45 bp):
TTGCCTCGACCACCATCGACACAAGCCGGCCCTTGGTACGGGCTC
Found at i:14048507 original size:90 final size:90
Alignment explanation
Indices: 14048193--14048510 Score: 266
Period size: 90 Copynumber: 3.5 Consensus size: 90
14048183 GTGTGGTCGG
* * * * * * **
14048193 TTGCCTCGAGCACCATCGACAGAAGATGGCCCCTGGTA-CGAGCAGTTGCCTCGAACACCATCGA
1 TTGCCTCGACCACCATCGACACACGATGGGCCCTGGTATAG-GCGGTTAACTCGAACACCATCGA
* * * **
14048257 CACACGCTGGGCCCTT-GTGCGGGCAG
65 CACAAGC-CGGCCCTTGGTACGGGCTC
* * * * ** * * *
14048283 TTGGCTCGATCACAATCGACACAC-ACTGGGCCTTGGTGCAGGCGGTTACCTCGACCACCATCGC
1 TTGCCTCGACCACCATCGACACACGA-TGGGCCCTGGTATAGGCGGTTAACTCGAACACCATCGA
*
14048347 CATAAGCCGGCCCTTGG-AGCGGGCTC
65 CACAAGCCGGCCCTTGGTA-CGGGCTC
* * * * * * *
14048373 TTGCCTCGACCACCATCGATAGAAGACGGCCCCTGGTATAGGCGGTTAAGTCGAACACCATCGGC
1 TTGCCTCGACCACCATCGACACACGATGGGCCCTGGTATAGGCGGTTAACTCGAACACCATCGAC
*
14048438 ACATGCCGGCCCTTGGTACGGGCTC
66 ACAAGCCGGCCCTTGGTACGGGCTC
* * *
14048463 TTGCCTCGACCACCATCGACACACGTTGGGCCCTAGTATGGGCGGTTA
1 TTGCCTCGACCACCATCGACACACGATGGGCCCTGGTATAGGCGGTTA
14048511 CCTCAAGCAC
Statistics
Matches: 178, Mismatches: 44, Indels: 12
0.76 0.19 0.05
Matches are distributed among these distances:
89 8 0.04
90 167 0.94
91 3 0.02
ACGTcount: A:0.20, C:0.33, G:0.28, T:0.19
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGACACACGATGGGCCCTGGTATAGGCGGTTAACTCGAACACCATCGAC
ACAAGCCGGCCCTTGGTACGGGCTC
Found at i:14048529 original size:90 final size:90
Alignment explanation
Indices: 14048193--14048546 Score: 241
Period size: 90 Copynumber: 3.9 Consensus size: 90
14048183 GTGTGGTCGG
* * * * * * ** *
14048193 TTGCCTCGAGCACCATCGACAGAAGATGGCCCCTGGTA-CGAGCAGTTGCCTCGAACACCATCGA
1 TTGCCTCGACCACCATCGACACAAGACGGCCCCTAGTATAG-GCGGTTAACTCGAACACCATCGG
* * * **
14048257 CACACGCTGGGCCCTT-GTGCGGGCAG
65 CACATGC-CGGCCCTTGGTACGGGCTC
* * * * * * * ** * * *
14048283 TTGGCTCGATCACAATCGACAC-ACACTGGGCCTTGGTGCAGGCGGTTACCTCGACCACCATCGC
1 TTGCCTCGACCACCATCGACACAAGAC-GGCCCCTAGTATAGGCGGTTAACTCGAACACCATCGG
* *
14048347 CATAAGCCGGCCCTTGG-AGCGGGCTC
65 CACATGCCGGCCCTTGGTA-CGGGCTC
* * * *
14048373 TTGCCTCGACCACCATCGATAGAAGACGGCCCCTGGTATAGGCGGTTAAGTCGAACACCATCGGC
1 TTGCCTCGACCACCATCGACACAAGACGGCCCCTAGTATAGGCGGTTAACTCGAACACCATCGGC
14048438 ACATGCCGGCCCTTGGTACGGGCTC
66 ACATGCCGGCCCTTGGTACGGGCTC
* ** * * * * *
14048463 TTGCCTCGACCACCATCGACACACGTTGGGCCCTAGTATGGGCGGTTACCTC-AAGCACTATTGG
1 TTGCCTCGACCACCATCGACACAAGACGGCCCCTAGTATAGGCGGTTAACTCGAA-CACCATCGG
** *
14048527 CACATGTTGGGCCTTGGTAC
65 CACATGCCGGCCCTTGGTAC
14048547 AGGCGGTTAC
Statistics
Matches: 206, Mismatches: 51, Indels: 14
0.76 0.19 0.05
Matches are distributed among these distances:
89 11 0.05
90 190 0.92
91 5 0.02
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (90 bp):
TTGCCTCGACCACCATCGACACAAGACGGCCCCTAGTATAGGCGGTTAACTCGAACACCATCGGC
ACATGCCGGCCCTTGGTACGGGCTC
Found at i:14048572 original size:135 final size:135
Alignment explanation
Indices: 14048406--14048753 Score: 351
Period size: 135 Copynumber: 2.6 Consensus size: 135
14048396 AGACGGCCCC
* *
14048406 TGGTATAGGCGGTTA-AGTCGAACACCATCGGCACATGCCGGCCCTTGGTACGGGCTCTTGCCTC
1 TGGTACAGGCGGTTACA-TCGAACACCATCGGCACATGCCGGCCCTTGGTACAGGCTCTTGCCTC
* * * * **
14048470 GACCACCATCGACACACGTTGGGCCCTAGTATGGGCGGTTACCTCAAGCACTATTGGCACATGTT
65 GACCACCATCGACACACGCTGGGCCCTAGTACGGGCGGTTACCTCAAGCACCATCGGCACATGCC
* *
14048535 GGGCCT
130 AGGCAT
* * * * * **
14048541 TGGTACAGGCGGTTACATCGAACACGATCGGCATATGCTAGG-CTTTGTTACAGGCAGTTGCCTC
1 TGGTACAGGCGGTTACATCGAACACCATCGGCACATGC-CGGCCCTTGGTACAGGCTCTTGCCTC
* * * * * *
14048605 GATCACCATC-AGTACACGCTGGGCTCTAGTACGGGTGGTTACCTCGAGCACCATCGGCATATGC
65 GACCACCATCGA-CACACGCTGGGCCCTAGTACGGGCGGTTACCTCAAGCACCATCGGCACATGC
14048669 CAGGCAT
129 CAGGCAT
* * * * * * ** **
14048676 TGGTACGGGCGGTTGCTTCGAGCACCATTGGCACAAGCCCACCCTTGGTGTAGGCTCTTGCCTCG
1 TGGTACAGGCGGTTACATCGAACACCATCGGCACATGCCGGCCCTTGGTACAGGCTCTTGCCTCG
14048741 ACCACCATCGACA
66 ACCACCATCGACA
14048754 GAAGATGGCC
Statistics
Matches: 166, Mismatches: 42, Indels: 10
0.76 0.19 0.05
Matches are distributed among these distances:
134 1 0.01
135 161 0.97
136 4 0.02
ACGTcount: A:0.20, C:0.29, G:0.28, T:0.23
Consensus pattern (135 bp):
TGGTACAGGCGGTTACATCGAACACCATCGGCACATGCCGGCCCTTGGTACAGGCTCTTGCCTCG
ACCACCATCGACACACGCTGGGCCCTAGTACGGGCGGTTACCTCAAGCACCATCGGCACATGCCA
GGCAT
Found at i:14060871 original size:45 final size:45
Alignment explanation
Indices: 14060815--14060918 Score: 118
Period size: 45 Copynumber: 2.3 Consensus size: 45
14060805 CGGGCTCTTG
* * * *
14060815 CCTCGACCACCATCGGTAGAAGATGGCCCCTAGTGCGGGCGGTTA
1 CCTCGAACACCATCGGTACAAGATGGCCCCTAGTGCGAGCGATTA
* * * * * *
14060860 CGTCGAACACCATCGGTACACGCTGGGCCCTGGTGCGAGCGATTG
1 CCTCGAACACCATCGGTACAAGATGGCCCCTAGTGCGAGCGATTA
14060905 CCTCGAACACCATC
1 CCTCGAACACCATC
14060919 AGCAGAAGCC
Statistics
Matches: 48, Mismatches: 11, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
45 48 1.00
ACGTcount: A:0.20, C:0.34, G:0.29, T:0.17
Consensus pattern (45 bp):
CCTCGAACACCATCGGTACAAGATGGCCCCTAGTGCGAGCGATTA
Found at i:14060996 original size:45 final size:45
Alignment explanation
Indices: 14060947--14061162 Score: 220
Period size: 45 Copynumber: 4.8 Consensus size: 45
14060937 GTGCGGGCTC
* * * * *
14060947 TTGCCTCGACCACTATTGGCACACACTGGGCCCTGGTGTGAGTGG
1 TTGCCTCGAACACCATCGACACACGCTGGGCCCTGGTGTGAGTGG
* * * *
14060992 TTGCCTTGAGCACCATCGACACACGCTGGGCCCTGGTGTGGGCGG
1 TTGCCTCGAACACCATCGACACACGCTGGGCCCTGGTGTGAGTGG
* * * * * *
14061037 TTACCTCGAACACCATCGGCACATGCTGGGCCCTGTTCTGGGTGG
1 TTGCCTCGAACACCATCGACACACGCTGGGCCCTGGTGTGAGTGG
* * * *
14061082 TTGCCTCGATCACCATCGATACACGCTGGGCCCTGATGCGAGTGG
1 TTGCCTCGAACACCATCGACACACGCTGGGCCCTGGTGTGAGTGG
* *
14061127 TTGCCTC-AAGCACCATCG-CACATGCTGGGCCTTGGT
1 TTGCCTCGAA-CACCATCGACACACGCTGGGCCCTGGT
14061163 ACGGACGGTT
Statistics
Matches: 140, Mismatches: 30, Indels: 3
0.81 0.17 0.02
Matches are distributed among these distances:
44 15 0.11
45 125 0.89
ACGTcount: A:0.16, C:0.31, G:0.30, T:0.23
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGACACACGCTGGGCCCTGGTGTGAGTGG
Found at i:14061029 original size:90 final size:90
Alignment explanation
Indices: 14060842--14061121 Score: 260
Period size: 90 Copynumber: 3.1 Consensus size: 90
14060832 AGAAGATGGC
* * * * * * *
14060842 CCCTAGTGCGGGCGGTTACGTCGAACACCATCGGTACACGCTGGGCCCTGGTGC-GAGCGATTGC
1 CCCTGGTGCGGGCGCTTACCTCGAACACCATCGGCACACACTGGGCCCTGGT-CTGAGTGGTTGC
* * * **
14060906 CTCGAACACCATC-AGCAGAAGC-CAG
65 CTCGAGCACCATCGA-CACACGCTGGG
* * * * * *
14060931 CCCTTGGTGCGGGCTCTTGCCTCGACCACTATTGGCACACACTGGGCCCTGGTGTGAGTGGTTGC
1 CCC-TGGTGCGGGCGCTTACCTCGAACACCATCGGCACACACTGGGCCCTGGTCTGAGTGGTTGC
*
14060996 CTTGAGCACCATCGACACACGCTGGG
65 CTCGAGCACCATCGACACACGCTGGG
* * ** * *
14061022 CCCTGGTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGGCCCTGTTCTGGGTGGTTGCC
1 CCCTGGTGCGGGCGCTTACCTCGAACACCATCGGCACACACTGGGCCCTGGTCTGAGTGGTTGCC
* *
14061087 TCGATCACCATCGATACACGCTGGG
66 TCGAGCACCATCGACACACGCTGGG
*
14061112 CCCTGATGCG
1 CCCTGGTGCG
14061122 AGTGGTTGCC
Statistics
Matches: 151, Mismatches: 36, Indels: 7
0.78 0.19 0.04
Matches are distributed among these distances:
89 3 0.02
90 143 0.95
91 5 0.03
ACGTcount: A:0.16, C:0.32, G:0.31, T:0.21
Consensus pattern (90 bp):
CCCTGGTGCGGGCGCTTACCTCGAACACCATCGGCACACACTGGGCCCTGGTCTGAGTGGTTGCC
TCGAGCACCATCGACACACGCTGGG
Found at i:14061045 original size:135 final size:134
Alignment explanation
Indices: 14060867--14061236 Score: 386
Period size: 135 Copynumber: 2.7 Consensus size: 134
14060857 TTACGTCGAA
* * * * *
14060867 CACCATCGGTACACGCTGGGCCCTGGTGCGAGCGATTGCCTCGAACACCATCAGCAGAAGCCAGC
1 CACCATC-GCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCCAGC
* * * *
14060932 CCTTGGTGCGGGCTCTTGCCTCGACCACTATTGGCACACACTGGGCCCTGGTGTGAGTGGTTGCC
65 CCTTGGTGCGGGCTCTTGCCTCGACCACCATTGACACACACTGGGCCCTGATGCGAGTGGTTGCC
**
14060997 TTGAG
130 TCAAG
* * * **
14061002 CACCATCGACACACGCTGGGCCCTGGTGTGGGCGGTTACCTCGAACACCATCGGCACATGCTGGG
1 CACCATCG-CACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGC-CAG
* * * * * *
14061067 CCC-T-GTTCTGGG-TGGTTGCCTCGATCACCATCGATACACGCTGGGCCCTGATGCGAGTGGTT
64 CCCTTGGTGC-GGGCT-CTTGCCTCGACCACCATTGACACACACTGGGCCCTGATGCGAGTGGTT
14061129 GCCTCAAG
127 GCCTCAAG
* * * * * **
14061137 CACCATCGCACATGCTGGGCCTTGGTACGGACGGTTGCTTCGAGTACCATCGGCACAAGCCAGCC
1 CACCATCGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCCAGCC
* * *
14061202 CTTGGTGTGAGCTTTTGCCTCGACCACCATTGACA
66 CTTGGTGCGGGCTCTTGCCTCGACCACCATTGACA
14061237 GAAGATGGCC
Statistics
Matches: 187, Mismatches: 41, Indels: 15
0.77 0.17 0.06
Matches are distributed among these distances:
133 4 0.02
134 68 0.36
135 111 0.59
136 4 0.02
ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22
Consensus pattern (134 bp):
CACCATCGCACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGGCACAAGCCAGCC
CTTGGTGCGGGCTCTTGCCTCGACCACCATTGACACACACTGGGCCCTGATGCGAGTGGTTGCCT
CAAG
Found at i:14061141 original size:90 final size:89
Alignment explanation
Indices: 14060972--14061193 Score: 250
Period size: 90 Copynumber: 2.5 Consensus size: 89
14060962 TTGGCACACA
* * * * *
14060972 CTGGGCCCTGGTGTGAGTGGTTGCCTTGAGCACCATCGACACACGCTGGGCCCTGGTGTGGGCGG
1 CTGGGCCCTGGTCTGAGTGGTTGCCTCGAGCACCATCGACACACGCTGGGCCCTGATGCGAGCGG
14061037 TTACCTCGAACACCATCGGCACATG
66 TTACCTCGAACACCATC-GCACATG
* * * * *
14061062 CTGGGCCCTGTTCTGGGTGGTTGCCTCGATCACCATCGATACACGCTGGGCCCTGATGCGAGTGG
1 CTGGGCCCTGGTCTGAGTGGTTGCCTCGAGCACCATCGACACACGCTGGGCCCTGATGCGAGCGG
*
14061127 TTGCCTC-AAGCACCATCGCACATG
66 TTACCTCGAA-CACCATCGCACATG
* * * * * *
14061151 CTGGGCCTTGGTACGGA-CGGTTGCTTCGAGTACCATCGGCACA
1 CTGGGCCCTGGT-CTGAGTGGTTGCCTCGAGCACCATCGACACA
14061194 AGCCAGCCCT
Statistics
Matches: 109, Mismatches: 21, Indels: 5
0.81 0.16 0.04
Matches are distributed among these distances:
89 39 0.36
90 70 0.64
ACGTcount: A:0.16, C:0.30, G:0.32, T:0.23
Consensus pattern (89 bp):
CTGGGCCCTGGTCTGAGTGGTTGCCTCGAGCACCATCGACACACGCTGGGCCCTGATGCGAGCGG
TTACCTCGAACACCATCGCACATG
Found at i:14063433 original size:26 final size:26
Alignment explanation
Indices: 14063382--14063434 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14063372 CCTATCCGAT
*
14063382 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14063408 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14063434 C
1 C
14063435 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14063841 original size:170 final size:170
Alignment explanation
Indices: 14063417--14063846 Score: 479
Period size: 170 Copynumber: 2.5 Consensus size: 170
14063407 GCTTAGACTG
* * * * * * *
14063417 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGAGCGTTCAGCTGATCGAAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGCCGATCGAA-
* * * * * * *
14063482 AGGCATA-ATACGCAAGCCAGGGATCTGCTTGGTCCCTCTCTGCGTGCTATCGATCCCGTTGCCG
65 AGGTA-AGATGCGCAAGCCGGGGATCAGCTTAGTCCCGCTCTGCGTGCTATCGATCCCGCTGCCG
* * *
14063546 GTCCAGCTGCCACAACCCTCGGTCCGGCTGGGGCTTAGACAT
129 GTCCAGCTGCCACAACCCTCGGTCCGACTAGGGCATAGACAT
** * * * * * * * *
14063588 GGAATGAACTCTATTTTCCTAAGCCAACCCACAAAATGAGCGTGCAGGCGCTCAGTCGACTGGAG
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGCCGA-TCGAA
* * *
14063653 AGGTAAGATGCACAAGCCGGGGATCAG-TCTAGTCCCGCTCTGTGTGCTATC-ATCCCGCTGCTG
65 AGGTAAGATGCGCAAGCCGGGGATCAGCT-TAGTCCCGCTCTGCGTGCTATCGATCCCGCTGCCG
* *
14063716 GTCTAGCTGCCACAACCCTCGGTCTGACTAGGGCATAGACAT
129 GTCCAGCTGCCACAACCCTCGGTCCGACTAGGGCATAGACAT
*
14063758 GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAACCGATCAGAA
1 GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGCCGATC-GAA
* *
14063823 AGGTAGGATGCGCAAGCCGAGGAT
65 AGGTAAGATGCGCAAGCCGGGGAT
14063847 TAGCCCGATC
Statistics
Matches: 209, Mismatches: 46, Indels: 9
0.79 0.17 0.03
Matches are distributed among these distances:
169 1 0.00
170 122 0.58
171 83 0.40
172 3 0.01
ACGTcount: A:0.25, C:0.28, G:0.27, T:0.20
Consensus pattern (170 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCCATAAAACGAGCGTGCGGGCGCTCAGCCGATCGAAA
GGTAAGATGCGCAAGCCGGGGATCAGCTTAGTCCCGCTCTGCGTGCTATCGATCCCGCTGCCGGT
CCAGCTGCCACAACCCTCGGTCCGACTAGGGCATAGACAT
Found at i:14063924 original size:26 final size:26
Alignment explanation
Indices: 14063895--14063946 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14063885 GTCGGTCCAA
14063895 TCTTAGACTGGGAATGAACTCCATAT
1 TCTTAGACTGGGAATGAACTCCATAT
14063921 TCTTAGACTGGGAATGAACTCCATAT
1 TCTTAGACTGGGAATGAACTCCATAT
14063947 GCCTAAGTCA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCATAT
Found at i:14064920 original size:45 final size:45
Alignment explanation
Indices: 14064867--14065018 Score: 180
Period size: 45 Copynumber: 3.4 Consensus size: 45
14064857 GTATGGGCAC
* * * * * *
14064867 TTGCCTCGACCGCCATCGGCATAAGCTGGGCCCTGGTAG-GGGTGG
1 TTGCCTCGACCACCATTGGCAGAAGATGGGCCATGGT-GCGGGCGG
* *
14064912 TTGTCTCGATCACCATTGGCAGAAGATGGGCCATGGTGCGGGCGG
1 TTGCCTCGACCACCATTGGCAGAAGATGGGCCATGGTGCGGGCGG
* *
14064957 TTGCCTTGACCACCATTGGCAGAAGATGGGCCATGGTGCGGGCAG
1 TTGCCTCGACCACCATTGGCAGAAGATGGGCCATGGTGCGGGCGG
* *
14065002 TTGCCTCCATCACCATT
1 TTGCCTCGACCACCATT
14065019 AGCACACACT
Statistics
Matches: 91, Mismatches: 15, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
44 1 0.01
45 90 0.99
ACGTcount: A:0.17, C:0.27, G:0.34, T:0.22
Consensus pattern (45 bp):
TTGCCTCGACCACCATTGGCAGAAGATGGGCCATGGTGCGGGCGG
Found at i:14065307 original size:90 final size:90
Alignment explanation
Indices: 14065149--14065376 Score: 234
Period size: 90 Copynumber: 2.5 Consensus size: 90
14065139 GATGAGACGG
* *
14065149 TGCGAGCGGTTGCCTC-AAGCACCATCGACACATGCTGGGCTCC-GGTG-TGGGCGATTGCCTTG
1 TGCG-GCGGTTGCCTCGAA-CACCATCGACACACGCTGGGC-CCTGGTGCTGGGCGATTGCCTCG
* *
14065211 ATCACCATCAGCACACGCTT-GGCCCCGT
63 ATCACCATCAGCACAC-ATTGGGCCCCGA
14065239 TGCAGGCGGTTGCCTCGAACACCATCGACACACGCTGGGCCCTGGTGCT-GGC-AGTTGCCTCGA
1 TGC-GGCGGTTGCCTCGAACACCATCGACACACGCTGGGCCCTGGTGCTGGGCGA-TTGCCTCGA
* * *
14065302 TCACCATCGGCATACATTGGGCCCTGA
64 TCACCATCAGCACACATTGGGCCCCGA
* * * ** *
14065329 TGCGGACGGTTGCCTCGAGCACCCTCGACAAACATTGGGCCTTGGTGC
1 TGCGG-CGGTTGCCTCGAACACCATCGACACACGCTGGGCCCTGGTGC
14065377 AGGCTGTACG
Statistics
Matches: 118, Mismatches: 13, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
89 7 0.06
90 107 0.91
91 4 0.03
ACGTcount: A:0.17, C:0.33, G:0.29, T:0.21
Consensus pattern (90 bp):
TGCGGCGGTTGCCTCGAACACCATCGACACACGCTGGGCCCTGGTGCTGGGCGATTGCCTCGATC
ACCATCAGCACACATTGGGCCCCGA
Found at i:14065323 original size:45 final size:44
Alignment explanation
Indices: 14065147--14065376 Score: 169
Period size: 45 Copynumber: 5.1 Consensus size: 44
14065137 TTGATGAGAC
* * ***
14065147 GGTGCGAGCGGTTGCCTCAAGCACCATCGACACATGCTGGGCTCC-
1 GGTGCG-GCGGTTGCCTCGATCACCATCGACACACATTGGGC-CCT
* * * * *
14065192 GGTGTGGGCGATTGCCTTGATCACCATC-AGCACACGCTT-GGCCCC
1 GGTG-CGGCGGTTGCCTCGATCACCATCGA-CACAC-ATTGGGCCCT
* * **
14065237 GTTGCAGGCGGTTGCCTCGAACACCATCGACACACGCTGGGCCCT
1 GGTGC-GGCGGTTGCCTCGATCACCATCGACACACATTGGGCCCT
* * *
14065282 GGTGCTGGCAGTTGCCTCGATCACCATCGGCATACATTGGGCCCT
1 GGTGC-GGCGGTTGCCTCGATCACCATCGACACACATTGGGCCCT
* * * * *
14065327 GATGCGGACGGTTGCCTCGAGCACCCTCGACAAACATTGGGCCTT
1 GGTGCGG-CGGTTGCCTCGATCACCATCGACACACATTGGGCCCT
14065372 GGTGC
1 GGTGC
14065377 AGGCTGTACG
Statistics
Matches: 145, Mismatches: 32, Indels: 16
0.75 0.17 0.08
Matches are distributed among these distances:
44 6 0.04
45 136 0.94
46 3 0.02
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.20
Consensus pattern (44 bp):
GGTGCGGCGGTTGCCTCGATCACCATCGACACACATTGGGCCCT
Found at i:14065422 original size:54 final size:54
Alignment explanation
Indices: 14065333--14065474 Score: 167
Period size: 54 Copynumber: 2.6 Consensus size: 54
14065323 CCCTGATGCG
* * ** * *
14065333 GACGGTTGCCTCGAGCACCCTCGACAAACATTGGGCCTTGGTGCAGGCTGTACG
1 GACGGTTGCCTCGAGCACCATCGACACACGCTGGGCCTTGGTACAGGCTGTACA
* * * * * **
14065387 GGCGGTTGCCTTGATCACCATCGACACATGCTGGGCCTTGGTACGGGCTGTGTA
1 GACGGTTGCCTCGAGCACCATCGACACACGCTGGGCCTTGGTACAGGCTGTACA
14065441 GACGGTTGCCTCGAGCACCATCGACACACGCTGG
1 GACGGTTGCCTCGAGCACCATCGACACACGCTGG
14065475 TCGATCACCA
Statistics
Matches: 71, Mismatches: 17, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.18, C:0.30, G:0.32, T:0.21
Consensus pattern (54 bp):
GACGGTTGCCTCGAGCACCATCGACACACGCTGGGCCTTGGTACAGGCTGTACA
Found at i:14065483 original size:24 final size:24
Alignment explanation
Indices: 14065451--14065498 Score: 87
Period size: 24 Copynumber: 2.0 Consensus size: 24
14065441 GACGGTTGCC
14065451 TCGAGCACCATCGACACACGCTGG
1 TCGAGCACCATCGACACACGCTGG
*
14065475 TCGATCACCATCGACACACGCTGG
1 TCGAGCACCATCGACACACGCTGG
14065499 GCCCCGGTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.25, C:0.38, G:0.23, T:0.15
Consensus pattern (24 bp):
TCGAGCACCATCGACACACGCTGG
Found at i:14065545 original size:45 final size:44
Alignment explanation
Indices: 14065475--14066273 Score: 501
Period size: 45 Copynumber: 17.8 Consensus size: 44
14065465 CACACGCTGG
* *
14065475 TCGATCACCATCGACACACGCTGGGCCCCGGTACAGGCGGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGC-GGCGGTTGCC
* * *
14065520 TCGATTACCATCGACAAACGTTGGGCCCTGGTGCGGACGGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGCGG-CGGTTGCC
* * *
14065565 TCGATCACCATCGACACATGCTGGGCCTTGGTGCGGGTGGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGC-GGCGGTTGCC
* * * *
14065610 TCGAACACCATCGGCACACGCTGGGCCCTGGTGTGGGCAGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTG-CGGCGGTTGCC
* * * *
14065655 TCGAGCACTATCGGCACACGATGGGCCCTGGTGCGAGCGGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGCG-GCGGTTGCC
* * * *
14065700 TCGAACACCATCGGCACATGCTGGGCCCTGGTGCGAACGGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGCG-GCGGTTGCC
* * *
14065745 TCGATCACCATCGGCACATGCTGGGCCCTAGTGCGGGCGGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGC-GGCGGTTGCC
* * * * * *
14065790 TCGACCACCATCGATAGAAGATGGCCCCTGGTGCGGACGGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGCGG-CGGTTGCC
* * * * * * * *
14065835 TCGACCACCATCGACAGAAGATGGCCCCTAGTGCGGGTGGTTGTGC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGC-GGCGGTTG-CC
* * * * * *
14065881 -CGAACACCATTGGCACATGCTGGGCCCTGGTACGGGCAGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGC-GGCGGTTGCC
* * * * *
14065925 TCAAACACCATCGACACATGCTGGGCCTTGGTGCGGGAGGTTGCC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGC-GGCGGTTGCC
* * * ** *
14065970 TCGAGCACCATCGACCCAAGCT-GGCCCTTGGTGCGGGCTCTTACC
1 TCGATCACCATCGACACACGCTGGGCCC-TGGTGC-GGCGGTTGCC
* * * * * * *
14066015 TCAACCACCATC-AGCAGAAGATGGCCCCTGGTGTGGGCGGTTGCGC
1 TCGATCACCATCGA-CACACGCTGGGCCCTGGTG-CGGCGGTTGC-C
* * * * * *
14066061 -CGAACACCATTGGCACACGCTAGGCCCTGGTGTGGGCGGTTACC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTG-CGGCGGTTGCC
* * * * * * *
14066105 TCGAACACCATCGGCACATGTTGGGCCTTGGTGCGAGAGGTTACC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGCG-GCGGTTGCC
* * * * * * **
14066150 TCGAGCACCATAGGCACAAGC-CGGCCCTTGGTGTGGGCTCTTGCC
1 TCGATCACCATCGACACACGCTGGGCCC-TGGTG-CGGCGGTTGCC
* * * * * * * * * *
14066195 TCGACCACCATCGGCAAAAGATAGCCCCTGGTGTAGGTGGTTGCA
1 TCGATCACCATCGACACACGCTGGGCCCTGGTG-CGGCGGTTGCC
* * * *
14066240 TCAAACACCATCGACATACGCTGGGCCCTAGTGC
1 TCGATCACCATCGACACACGCTGGGCCCTGGTGC
14066274 ACGTGTCACA
Statistics
Matches: 604, Mismatches: 130, Indels: 41
0.78 0.17 0.05
Matches are distributed among these distances:
44 17 0.03
45 571 0.95
46 16 0.03
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.19
Consensus pattern (44 bp):
TCGATCACCATCGACACACGCTGGGCCCTGGTGCGGCGGTTGCC
Found at i:14065801 original size:180 final size:181
Alignment explanation
Indices: 14065511--14066273 Score: 793
Period size: 180 Copynumber: 4.2 Consensus size: 181
14065501 CCCGGTACAG
** * * * *
14065511 GCGGTTGCCTCGATTACCATCGACAAACGTTGGGCCCTGGTGCGGACGGTTGCCTCGATCACCAT
1 GCGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGACGGTTGCCTCGAACACCAT
* * * *
14065576 CGACACATGCTGGGCCTTGGTGCGGGTGGTTGCCTCGAACACCATCGGCACACGCTGGGCCC-TG
66 CGACACATGCTGGGCCTTGGTGCGGGAGGTTGCCTCGAGCACCATCGACACAAGCTGGGCCCTTG
* ** * * * *
14065640 GTGTGGGCAGTTGCCTCGAGCACTATCGGCACACGATGGGCCCTGGTGCGA
131 GTGCGGGCTCTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGA
* * *
14065691 GCGGTTGCCTCGAACACCATCGGCACATGCTGGGCCCTGGTGCGAACGGTTGCCTCGATCACCAT
1 GCGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGACGGTTGCCTCGAACACCAT
* * * * * * * * *
14065756 CGGCACATGCTGGGCCCTAGTGCGGGCGGTTGCCTCGACCACCATCGATAGAAGAT-GGCCCCTG
66 CGACACATGCTGGGCCTTGGTGCGGGAGGTTGCCTCGAGCACCATCGACACAAGCTGGGCCCTTG
* ** * * * *
14065820 GTGCGGACGGTTGCCTCGACCACCATCGACAGAAGATGGCCCCTAGTGCGG
131 GTGCGGGCTCTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGA
* * * * * * * *
14065871 GTGGTTGTGC-CGAACACCATTGGCACATGCTGGGCCCTGGTACGGGCAGTTGCCTCAAACACCA
1 GCGGTTG-CCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGACGGTTGCCTCGAACACCA
*
14065935 TCGACACATGCTGGGCCTTGGTGCGGGAGGTTGCCTCGAGCACCATCGACCCAAGCT-GGCCCTT
65 TCGACACATGCTGGGCCTTGGTGCGGGAGGTTGCCTCGAGCACCATCGACACAAGCTGGGCCCTT
* * * * * *
14065999 GGTGCGGGCTCTTACCTCAACCACCATCAGCAGAAGATGGCCCCTGGTGTGG
130 GGTGCGGGCTCTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGA
* * * * *
14066051 GCGGTTGCGC-CGAACACCATTGGCACACGCTAGGCCCTGGTGTGGGCGGTTACCTCGAACACCA
1 GCGGTTGC-CTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGACGGTTGCCTCGAACACCA
* * * * * * *
14066115 TCGGCACATGTTGGGCCTTGGTGCGAGAGGTTACCTCGAGCACCATAGGCACAAGC-CGGCCCTT
65 TCGACACATGCTGGGCCTTGGTGCGGGAGGTTGCCTCGAGCACCATCGACACAAGCTGGGCCCTT
* * * *
14066179 GGTGTGGGCTCTTGCCTCGACCACCATCGGCAAAAGATAGCCCCTGGTG-TA
130 GGTGCGGGCTCTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGA
* * * * * *
14066230 GGTGGTTGCATCAAACACCATCGACATACGCTGGGCCCTAGTGC
1 -GCGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGC
14066274 ACGTGTCACA
Statistics
Matches: 488, Mismatches: 89, Indels: 12
0.83 0.15 0.02
Matches are distributed among these distances:
179 5 0.01
180 482 0.99
181 1 0.00
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (181 bp):
GCGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTGCGGACGGTTGCCTCGAACACCAT
CGACACATGCTGGGCCTTGGTGCGGGAGGTTGCCTCGAGCACCATCGACACAAGCTGGGCCCTTG
GTGCGGGCTCTTGCCTCGACCACCATCGGCACAAGATGGCCCCTGGTGCGA
Found at i:14066224 original size:135 final size:135
Alignment explanation
Indices: 14065514--14066266 Score: 629
Period size: 135 Copynumber: 5.6 Consensus size: 135
14065504 GGTACAGGCG
** * * * *
14065514 GTTGCCTCGATTACCATCGACA-AACGTTGGGCCCTGGTGCGGACGGTTGCCTCGATCACCATCG
1 GTTGCCTCGAACACCATCGGCACAA-GATGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCG
* * * *
14065578 ACACATGCTGGGCCTTGGTGCGGGTGGTTGCCTCGAACACCATCGGCACACGCTGGGCCCTGGTG
65 ACACATGCTGGGCCTTGGTGCGGGAGGTTACCTCGAACACCATAGGCACAAGCTGGGCCCTGGTG
14065643 TGGGCA
130 TGGGCA
* * * * *
14065649 GTTGCCTCGAGCACTATCGGCACACGATGGGCCCTGGTGCGAGCGGTTGCCTCGAACACCATCGG
1 GTTGCCTCGAACACCATCGGCACAAGATGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGA
* * * * * * *
14065714 CACATGCTGGGCCCTGGTGC-GAACGGTTGCCTCGATCACCATCGGCACATGCTGGGCCCTAGTG
66 CACATGCTGGGCCTTGGTGCGGGA-GGTTACCTCGAACACCATAGGCACAAGCTGGGCCCTGGTG
* *
14065778 CGGGCG
130 TGGGCA
* ** * * * *
14065784 GTTGCCTCGACCACCATCGATAGAAGATGGCCCCTGGTGCGGACGGTTGCCTCGACCACCATCGA
1 GTTGCCTCGAACACCATCGGCACAAGATGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGA
* * * * * * * ** * * *
14065849 CAGAAGATGGCCCCTAGTGCGGGTGGTTGTGC-CGAACACCATTGGCACATGCTGGGCCCTGGTA
66 CACATGCTGGGCCTTGGTGCGGGAGGTT-ACCTCGAACACCATAGGCACAAGCTGGGCCCTGGTG
*
14065913 CGGGCA
130 TGGGCA
* * * * * * *
14065919 GTTGCCTCAAACACCATCGACACATGCTGGGCCTTGGTGCGGGAGGTTGCCTCGAGCACCATCGA
1 GTTGCCTCGAACACCATCGGCACAAGATGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGA
* * * *** * * *
14065984 CCCAAGCTGGCCCTTGGTGCGGGCTCTTACCTC-AACCACCATCA-GCAGAAGATGGCCCCTGGT
66 CACATGCTGGGCCTTGGTGCGGGAGGTTACCTCGAA-CACCAT-AGGCACAAGCTGGGCCCTGGT
*
14066047 GTGGGCG
129 GTGGGCA
* * * * * *
14066054 GTTGCGC-CGAACACCATTGGCACACGCTAGGCCCTGGTGTGGGCGGTTACCTCGAACACCATCG
1 GTTGC-CTCGAACACCATCGGCACAAGATGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCG
* * * * *
14066118 GCACATGTTGGGCCTTGGTGCGAGAGGTTACCTCGAGCACCATAGGCACAAGC-CGGCCCTTGGT
65 ACACATGCTGGGCCTTGGTGCGGGAGGTTACCTCGAACACCATAGGCACAAGCTGGGCCC-TGGT
*
14066182 GTGGGCT
129 GTGGGCA
* * * * * ** * * *
14066189 CTTGCCTCGACCACCATCGGCAAAAGATAGCCCCTGGTGTAGGTGGTTGCATCAAACACCATCGA
1 GTTGCCTCGAACACCATCGGCACAAGATGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGA
* *
14066254 CATACGCTGGGCC
66 CACATGCTGGGCC
14066267 CTAGTGCACG
Statistics
Matches: 493, Mismatches: 113, Indels: 24
0.78 0.18 0.04
Matches are distributed among these distances:
134 10 0.02
135 478 0.97
136 5 0.01
ACGTcount: A:0.18, C:0.31, G:0.31, T:0.20
Consensus pattern (135 bp):
GTTGCCTCGAACACCATCGGCACAAGATGGGCCCTGGTGCGGGCGGTTGCCTCGAACACCATCGA
CACATGCTGGGCCTTGGTGCGGGAGGTTACCTCGAACACCATAGGCACAAGCTGGGCCCTGGTGT
GGGCA
Found at i:14071974 original size:45 final size:45
Alignment explanation
Indices: 14071910--14072245 Score: 289
Period size: 45 Copynumber: 7.5 Consensus size: 45
14071900 CGTGACACCC
* * *
14071910 GCGGTTGCTTCGAACACCATTGACACACGCTGGGCCCTGGTGCGG
1 GCGGTTGCCTCGAACACCATCGACACACGATGGGCCCTGGTGCGG
* * * * * **
14071955 GCGGTTGCCTCGAGCACCATCGACAGAAGATGGCCCCTGGTACAA
1 GCGGTTGCCTCGAACACCATCGACACACGATGGGCCCTGGTGCGG
* * * * *
14072000 GTGGTTGCCTCAAACACCATCGACACACGCTAGGCCCTGGTACGG
1 GCGGTTGCCTCGAACACCATCGACACACGATGGGCCCTGGTGCGG
* * * *
14072045 GTGGTTGGCTCGATCACCATCGACACACGTTGGGCCCTGGTGCGG
1 GCGGTTGCCTCGAACACCATCGACACACGATGGGCCCTGGTGCGG
* * * * *
14072090 GCAGTTGCCTCGACCACCATCGCCACAAG-TCGGCCCTTGGTGCGG
1 GCGGTTGCCTCGAACACCATCGACACACGATGGGCCC-TGGTGCGG
** * * * * * *
14072135 GCTCTTGCCTGGACCACTATCGGCAGAAGAT-GGCCCTGGTGCGG
1 GCGGTTGCCTCGAACACCATCGACACACGATGGGCCCTGGTGCGG
* * ** * *
14072179 GCGGTTGCGTCAAACACCATCGGTACACGTTGGGCCCTAGTGCGG
1 GCGGTTGCCTCGAACACCATCGACACACGATGGGCCCTGGTGCGG
* *
14072224 GTGGTTGCCTCGATCACCATCG
1 GCGGTTGCCTCGAACACCATCG
14072246 GTACACGCTA
Statistics
Matches: 233, Mismatches: 55, Indels: 6
0.79 0.19 0.02
Matches are distributed among these distances:
44 34 0.15
45 198 0.85
46 1 0.00
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.20
Consensus pattern (45 bp):
GCGGTTGCCTCGAACACCATCGACACACGATGGGCCCTGGTGCGG
Found at i:14072065 original size:90 final size:89
Alignment explanation
Indices: 14071910--14072245 Score: 343
Period size: 90 Copynumber: 3.8 Consensus size: 89
14071900 CGTGACACCC
* * * * *
14071910 GCGGTTGCTTCGAACACCATTGACACACGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCAT
1 GCGGTTGCCTCAAACACCATCGACACACGCTGGGCCCTGGTGCGGGTGGTTGCCTCGATCACCAT
* **
14071975 CGACAGAAGATGGCCCCTGGTACAA
66 CGACAGAAGATGG-CCCTGGTGCGG
* * * *
14072000 GTGGTTGCCTCAAACACCATCGACACACGCTAGGCCCTGGTACGGGTGGTTGGCTCGATCACCAT
1 GCGGTTGCCTCAAACACCATCGACACACGCTGGGCCCTGGTGCGGGTGGTTGCCTCGATCACCAT
* * *
14072065 CGACACACGTTGGGCCCTGGTGCGG
66 CGACAGAAGAT-GGCCCTGGTGCGG
* * * * * * * * * *
14072090 GCAGTTGCCTCGACCACCATCGCCACAAG-TCGGCCCTTGGTGCGGGCT-CTTGCCTGGACCACT
1 GCGGTTGCCTCAAACACCATCGACACACGCTGGGCCC-TGGTGCGGG-TGGTTGCCTCGATCACC
*
14072153 ATCGGCAGAAGATGGCCCTGGTGCGG
64 ATCGACAGAAGATGGCCCTGGTGCGG
* ** * *
14072179 GCGGTTGCGTCAAACACCATCGGTACACGTTGGGCCCTAGTGCGGGTGGTTGCCTCGATCACCAT
1 GCGGTTGCCTCAAACACCATCGACACACGCTGGGCCCTGGTGCGGGTGGTTGCCTCGATCACCAT
14072244 CG
66 CG
14072246 GTACACGCTA
Statistics
Matches: 196, Mismatches: 45, Indels: 11
0.78 0.18 0.04
Matches are distributed among these distances:
88 1 0.01
89 64 0.33
90 128 0.65
91 3 0.02
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.20
Consensus pattern (89 bp):
GCGGTTGCCTCAAACACCATCGACACACGCTGGGCCCTGGTGCGGGTGGTTGCCTCGATCACCAT
CGACAGAAGATGGCCCTGGTGCGG
Found at i:14072312 original size:45 final size:45
Alignment explanation
Indices: 14072262--14072445 Score: 174
Period size: 45 Copynumber: 4.1 Consensus size: 45
14072252 GCTAGTCGAT
* *
14072262 CACCATCGACACATGCTGGGCCTTGGTACAAGCGGTTGCCTCAAA
1 CACCATCGACACATGCTGGGCCTTGGTACGAGCGGTTGCCTCAAG
* * * * * ** *
14072307 CACCATC-AGCACAAGCCGGCCCTTGGTGCGGGCTCTTACCTCAAG
1 CACCATCGA-CACATGCTGGGCCTTGGTACGAGCGGTTGCCTCAAG
* * * * *
14072352 CACCATCGGCACACGCTGGGCCCT-GTGCGAGCGGTTGCCTCGAG
1 CACCATCGACACATGCTGGGCCTTGGTACGAGCGGTTGCCTCAAG
* * * *
14072396 CACCATCGGCACATGTTGGGCCTTGGTACGAGCGGTTGCTTCGAG
1 CACCATCGACACATGCTGGGCCTTGGTACGAGCGGTTGCCTCAAG
14072441 CACCA
1 CACCA
14072446 ATGACATAAG
Statistics
Matches: 111, Mismatches: 25, Indels: 6
0.78 0.18 0.04
Matches are distributed among these distances:
44 37 0.33
45 74 0.67
ACGTcount: A:0.19, C:0.34, G:0.28, T:0.19
Consensus pattern (45 bp):
CACCATCGACACATGCTGGGCCTTGGTACGAGCGGTTGCCTCAAG
Found at i:14075646 original size:197 final size:196
Alignment explanation
Indices: 14075305--14075699 Score: 625
Period size: 197 Copynumber: 2.0 Consensus size: 196
14075295 GTGTCAGCCA
* * * *
14075305 TCCAATTTGCCAAGGCGGTAAGCAGACAAGAAGACACCTTCTTGGTAGCCCTAAATATGATGAGC
1 TCCAATTTACCAAGGCGGTAAACAAACAAGAAGACACCTTCTTGGCAGCCCTAAATATGATGAGC
* *
14075370 CAAGGGAGAAGGAGACTGAGTCACTCTTGAAGGTGCTAAAGGTGCTGAAGACCTTTAGTGATGTG
66 CAAGGGAGAAAGAGACTGAGTCACCCTTGAAGGTGCTAAAGGTGCTGAAGACCTTTAGTGATGTG
** * *
14075435 ATGCCCGTAAAGCTGCCTAGCAAGCTACCACCTAAGA-GAGAGGTGGACCATAAGATCGAGCTGG
131 ATGCCCACAAAGCTGCCTAACAAGCTACCACCTAAGAGGA-AGGTGGACCACAAGATCGAGCTGG
14075499 TG
195 TG
* *
14075501 TCCAATTTACCAAGGTGGTAAACAAACAAGAAGACACCTTCTTGGCAGCCCTGAAATATGTTGAG
1 TCCAATTTACCAAGGCGGTAAACAAACAAGAAGACACCTTCTTGGCAGCCCT-AAATATGATGAG
14075566 CCAAGGGAGAAAGAGA-TCGAGTCACCCTT-AGAGGTGCTAAAGGTGCTGAAGACCTTTAGTGAT
65 CCAAGGGAGAAAGAGACT-GAGTCACCCTTGA-AGGTGCTAAAGGTGCTGAAGACCTTTAGTGAT
14075629 GTGATGCCCACAAAGCTGCCTAACAAGCTACCACCTAAGAGGAAGGTGGACCACAAGATCGAGCT
128 GTGATGCCCACAAAGCTGCCTAACAAGCTACCACCTAAGAGGAAGGTGGACCACAAGATCGAGCT
14075694 GGTG
193 GGTG
14075698 TC
1 TC
14075700 TGAGGCCAAG
Statistics
Matches: 183, Mismatches: 12, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
196 49 0.27
197 132 0.72
198 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.27, T:0.20
Consensus pattern (196 bp):
TCCAATTTACCAAGGCGGTAAACAAACAAGAAGACACCTTCTTGGCAGCCCTAAATATGATGAGC
CAAGGGAGAAAGAGACTGAGTCACCCTTGAAGGTGCTAAAGGTGCTGAAGACCTTTAGTGATGTG
ATGCCCACAAAGCTGCCTAACAAGCTACCACCTAAGAGGAAGGTGGACCACAAGATCGAGCTGGT
G
Found at i:14082984 original size:45 final size:45
Alignment explanation
Indices: 14082931--14083725 Score: 249
Period size: 45 Copynumber: 17.7 Consensus size: 45
14082921 CCCTAGTGCA
* * *
14082931 GGCGGTTGCCTCGAGCACCATCGTCACAACCTGGGCCCTGGTGAG
1 GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGCCCTGGTGAG
* ** * * * *
14082976 GGCGGTTGCCTCGATCACCATCGGTAGACGTTGGGCCCTGGTGTG
1 GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGCCCTGGTGAG
* * * * *
14083021 GGCGGTTACCTCGACCACCATCGACATAAGATGGCCCCTGGT-ACG
1 GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGCCCTGGTGA-G
* * *
14083066 GGCGGTTACACT-GAACACCATCGACACATGCTGGGCCCTAGTGCA-
1 GGCGGTTGC-CTCGAACACCATCGACACAAGCTGGGCCCTGGTG-AG
* * * ** * * *
14083111 GGCGATTGCCTCAAACACCATCGGCACGTGTTGGGCCTTGGTGCG
1 GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGCCCTGGTGAG
* * * * * * *
14083156 AGAGGTTGCCTCGAGCACCATTGGCACAAGC-CGGCCTTTGGT-ACG
1 GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGCC-CTGGTGA-G
** * * * * * * *
14083201 GGCTCTTGCCTTGACCACCATCGATAGAAGAT-GGCACTTGGTGCG
1 GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGC-CCTGGTGAG
* * * ** * * * *
14083246 GGTGGTTGCCTCGACCACTATCGGTAGAAGATGGCCCCTGGTGCG
1 GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGCCCTGGTGAG
* * * * *
14083291 GGCGGTTACGTCGAACACCATCGGCACACGCTGGGCCCTGGTGCG
1 GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGCCCTGGTGAG
* * * * * * *
14083336 AGCGATTGCCTCAAACACCATTGGCACGTA-CTGGGCCTTGGTGCA-
1 GGCGGTTGCCTCGAACACCATCGACAC-AAGCTGGGCCCTGGTG-AG
** * * * * * * * *
14083381 GAAGGTTACCTTGAGCACTATCGCCATAAG-TCGACCCTTGGTGTA-
1 GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGCCC-TGGTG-AG
* ** ** * * * *
14083426 GCCTCTTGCCTC-AACCACCATCGGTAGAAGATGGCCCCTGGTG-C
1 GGCGGTTGCCTCGAA-CACCATCGACACAAGCTGGGCCCTGGTGAG
* * * * * * * *
14083470 GGTGGTTACCTCAAACACCATCGACATACGTTGGGCCTTGGTGCG
1 GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGCCCTGGTGAG
** * * * * * **
14083515 TACGGTTGCCTCAAACACCATTGGCACATGTTGGGCCCTGGTGCC
1 GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGCCCTGGTGAG
* * * * * *
14083560 GGCAGTTACCTCGAGCACCATCGATAGAAGAT-GGCCTCTGGT-ACG
1 GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGCC-CTGGTGA-G
* * * * * * *
14083605 GACAGTTACCTCAAACACCATCGGCACACA-TTGTGCCCTGGT-ACG
1 GGCGGTTGCCTCGAACACCATCGACACA-AGCTGGGCCCTGGTGA-G
* * *
14083650 GGCGGTTGCCTC-AATCACCATCGACACACGCTAGGCCTTGGT-ACG
1 GGCGGTTGCCTCGAA-CACCATCGACACAAGCTGGGCCCTGGTGA-G
* * *
14083695 AGCGGTTGCCTCGACCACCATCGCCACAAGC
1 GGCGGTTGCCTCGAACACCATCGACACAAGC
14083726 CGGCCCTTGG
Statistics
Matches: 551, Mismatches: 171, Indels: 56
0.71 0.22 0.07
Matches are distributed among these distances:
44 46 0.08
45 489 0.89
46 15 0.03
47 1 0.00
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (45 bp):
GGCGGTTGCCTCGAACACCATCGACACAAGCTGGGCCCTGGTGAG
Found at i:14083326 original size:225 final size:225
Alignment explanation
Indices: 14082981--14083495 Score: 599
Period size: 225 Copynumber: 2.3 Consensus size: 225
14082971 GTGAGGGCGG
* * * * * * *
14082981 TTGCCTCGATCACCATCGGTAGACGTTGGGC-CCTGGTGTGGGCGGTTACCTCGACCACCATCGA
1 TTGCCTCAACCACCATCGATAGAAGAT-GGCACCTGGTGCGGGTGGTTACCTCGACCACCATCGA
* *
14083045 CATAAGATGGCCCCTGGTACGGGCGGTTACACTGAACACCATCGACACATGCTGGGCCCTAGTGC
65 CAGAAGATGGCCCCTGGTACGGGCGGTTACACTGAACACCATCGACACACGCTGGGCCCTAGTGC
** *
14083110 -AGGCGATTGCCTCAAACACCATCGGCACGTGTTGGGCCTTGGTGC-GAGAGGTTGCCTCGAGCA
130 GA-GCGATTGCCTCAAACACCATCGGCACGTACTGGGCCTTGGTGCAGA-AGGTTACCTCGAGCA
* * * * * *
14083173 CCATTGGCACAAGCCGGCCTTTGGTACGGGCTC
193 CCATCGCCACAAGCCGACCCTTGGTACAGCCTC
** * * * **
14083206 TTGCCTTGACCACCATCGATAGAAGATGGCACTTGGTGCGGGTGGTTGCCTCGACCACTATCGGT
1 TTGCCTCAACCACCATCGATAGAAGATGGCACCTGGTGCGGGTGGTTACCTCGACCACCATCGAC
* * * *
14083271 AGAAGATGGCCCCTGGTGCGGGCGGTTAC-GTCGAACACCATCGGCACACGCTGGGCCCTGGTGC
66 AGAAGATGGCCCCTGGTACGGGCGGTTACACT-GAACACCATCGACACACGCTGGGCCCTAGTGC
* * *
14083335 GAGCGATTGCCTCAAACACCATTGGCACGTACTGGGCCTTGGTGCAGAAGGTTACCTTGAGCACT
130 GAGCGATTGCCTCAAACACCATCGGCACGTACTGGGCCTTGGTGCAGAAGGTTACCTCGAGCACC
* * **
14083400 ATCGCCATAAGTCGACCCTTGGTGTAGCCTC
195 ATCGCCACAAGCCGACCCTTGGTACAGCCTC
* * * *
14083431 TTGCCTCAACCACCATCGGTAGAAGATGGCCCCTGGTGC-GGTGGTTACCTCAAACACCATCGAC
1 TTGCCTCAACCACCATCGATAGAAGATGGCACCTGGTGCGGGTGGTTACCTCGACCACCATCGAC
14083495 A
66 A
14083496 TACGTTGGGC
Statistics
Matches: 241, Mismatches: 45, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
224 24 0.10
225 214 0.89
226 3 0.01
ACGTcount: A:0.20, C:0.30, G:0.29, T:0.21
Consensus pattern (225 bp):
TTGCCTCAACCACCATCGATAGAAGATGGCACCTGGTGCGGGTGGTTACCTCGACCACCATCGAC
AGAAGATGGCCCCTGGTACGGGCGGTTACACTGAACACCATCGACACACGCTGGGCCCTAGTGCG
AGCGATTGCCTCAAACACCATCGGCACGTACTGGGCCTTGGTGCAGAAGGTTACCTCGAGCACCA
TCGCCACAAGCCGACCCTTGGTACAGCCTC
Found at i:14083570 original size:179 final size:180
Alignment explanation
Indices: 14083251--14083582 Score: 463
Period size: 179 Copynumber: 1.9 Consensus size: 180
14083241 GTGCGGGTGG
* * * * *
14083251 TTGCCTCGACCACTATCGGTAGAAGATGGCCCCTGGTGCGGGCGGTTACGTCGAACACCATCGGC
1 TTGCCTCAACCACCATCGGTAGAAGATGGCCCCTGGTGCGGGCGGTTACCTCAAACACCATCGAC
* *
14083316 ACACGCTGGGCCCTGGTGCGAGCGATTGCCTCAAACACCATTGGCACGTACTGGGCCTTGGTGCA
66 ACACGCTGGGCCCTGGTGCGAGCGATTGCCTCAAACACCATTGGCACATACTGGGCCCTGGTGCA
* *
14083381 GAAGGTTACCTTGAGCACTATCGCCATAAGTCGACCCTTGGTGTAGCCTC
131 GAAGGTTACCTCGAGCACCATCGCCATAAGTCGACCCTTGGTGTAGCCTC
*
14083431 TTGCCTCAACCACCATCGGTAGAAGATGGCCCCTGGTGC-GGTGGTTACCTCAAACACCATCGAC
1 TTGCCTCAACCACCATCGGTAGAAGATGGCCCCTGGTGCGGGCGGTTACCTCAAACACCATCGAC
* * * * **
14083495 ATACGTTGGGCCTTGGTGCGTA-CGGTTGCCTCAAACACCATTGGCACATGTTGGGCCCTGGTGC
66 ACACGCTGGGCCCTGGTGCG-AGCGATTGCCTCAAACACCATTGGCACATACTGGGCCCTGGTG-
* *
14083559 CGGCA-GTTACCTCGAGCACCATCG
129 CAGAAGGTTACCTCGAGCACCATCG
14083583 ATAGAAGATG
Statistics
Matches: 132, Mismatches: 18, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
179 91 0.69
180 41 0.31
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (180 bp):
TTGCCTCAACCACCATCGGTAGAAGATGGCCCCTGGTGCGGGCGGTTACCTCAAACACCATCGAC
ACACGCTGGGCCCTGGTGCGAGCGATTGCCTCAAACACCATTGGCACATACTGGGCCCTGGTGCA
GAAGGTTACCTCGAGCACCATCGCCATAAGTCGACCCTTGGTGTAGCCTC
Found at i:14083707 original size:135 final size:134
Alignment explanation
Indices: 14083431--14083717 Score: 324
Period size: 135 Copynumber: 2.1 Consensus size: 134
14083421 GTGTAGCCTC
* * * **
14083431 TTGCCTCAACCACCATCGGTAGAAGATGGCCCCTGGTGCGGTGGTTACCTCAAACACCATCGACA
1 TTGCCTCGACCACCATCGATAGAAGATGGCCCCTGGTACGGCAGTTACCTCAAACACCATCGACA
* * * * * * * * * * *
14083496 TACGTTGGGCCTTGGTGCGTACGGTTGCCTCAAACACCATTGGCACATGTTGGGCCCTGGTGCCG
66 CACATTGGGCCCTGGTACGGACGGTTGCCTCAAACACCATCGACACACGCTAGGCCCTGGTGACG
14083561 GCAG
131 GCAG
* * * *
14083565 TTACCTCGAGCACCATCGATAGAAGATGGCCTCTGGTACGGACAGTTACCTCAAACACCATCGGC
1 TTGCCTCGACCACCATCGATAGAAGATGGCCCCTGGTACGG-CAGTTACCTCAAACACCATCGAC
* * * *
14083630 ACACATTGTGCCCTGGTACGGGCGGTTGCCTCAATCACCATCGACACACGCTAGGCCTTGGT-AC
65 ACACATTGGGCCCTGGTACGGACGGTTGCCTCAAACACCATCGACACACGCTAGGCCCTGGTGAC
*
14083694 GAGCGG
130 G-GCAG
14083700 TTGCCTCGACCACCATCG
1 TTGCCTCGACCACCATCG
14083718 CCACAAGCCG
Statistics
Matches: 124, Mismatches: 27, Indels: 3
0.81 0.18 0.02
Matches are distributed among these distances:
134 37 0.30
135 87 0.70
ACGTcount: A:0.21, C:0.31, G:0.26, T:0.21
Consensus pattern (134 bp):
TTGCCTCGACCACCATCGATAGAAGATGGCCCCTGGTACGGCAGTTACCTCAAACACCATCGACA
CACATTGGGCCCTGGTACGGACGGTTGCCTCAAACACCATCGACACACGCTAGGCCCTGGTGACG
GCAG
Found at i:14083734 original size:45 final size:46
Alignment explanation
Indices: 14083639--14083736 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 46
14083629 CACACATTGT
* * *
14083639 GCCC-TGGTACGGGCGGTTGCCTCAATCACCATCGACACACGCTAG
1 GCCCTTGGTACGAGCGGTTGCCTCAACCACCATCGACACAAGCTAG
* * *
14083684 G-CCTTGGTACGAGCGGTTGCCTCGACCACCATCGCCACAAGC-CG
1 GCCCTTGGTACGAGCGGTTGCCTCAACCACCATCGACACAAGCTAG
14083728 GCCCTTGGT
1 GCCCTTGGT
14083737 GTGAGCTCTT
Statistics
Matches: 45, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
44 4 0.09
45 41 0.91
ACGTcount: A:0.17, C:0.37, G:0.28, T:0.18
Consensus pattern (46 bp):
GCCCTTGGTACGAGCGGTTGCCTCAACCACCATCGACACAAGCTAG
Found at i:14083898 original size:45 final size:45
Alignment explanation
Indices: 14083819--14084126 Score: 230
Period size: 45 Copynumber: 6.8 Consensus size: 45
14083809 CACACGCTGG
* * * * * *
14083819 TCGATCACCATAGGCACACGTTGGGCCTTAGTGCGGGCGGTTGCC
1 TCGAACACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGGTTGCC
* * **
14083864 TCAAACACCATCGGCACAAGCTGGCCCTTGGTGCGAGCTCTTGCC
1 TCGAACACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGGTTGCC
* * * * *
14083909 TCGACCACCATTGGCACACGCTGGGCCC-TGGTGCTGGCGGTTACC
1 TCGAACACCATCGGCACAAGCT-GGCCCTTGGTGCGGGCGGTTGCC
* * *
14083954 TTGAGCACCATCGGCACACA-CTGGGCCC-TGGTGCGGGCGGTTACC
1 TCGAACACCATCGGCACA-AGCT-GGCCCTTGGTGCGGGCGGTTGCC
* * * * * *
14083999 TCGAACACCATCGGCACATGCTGGGCCC-AGTTACGGGTGGTTACC
1 TCGAACACCATCGGCACAAGCT-GGCCCTTGGTGCGGGCGGTTGCC
* * * * * *
14084044 TCGATCACCATCGGCACACGCTGGCCCTTGGTACGGGCAGTCGCA
1 TCGAACACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGGTTGCC
* * **
14084089 TCG-ACTACCATTGGTATGAGCTGGCCCTTGGTGCGGGC
1 TCGAAC-ACCATCGGCACAAGCTGGCCCTTGGTGCGGGC
14084127 ACATGCCCCA
Statistics
Matches: 211, Mismatches: 47, Indels: 10
0.79 0.18 0.04
Matches are distributed among these distances:
44 6 0.03
45 200 0.95
46 5 0.02
ACGTcount: A:0.17, C:0.32, G:0.31, T:0.20
Consensus pattern (45 bp):
TCGAACACCATCGGCACAAGCTGGCCCTTGGTGCGGGCGGTTGCC
Found at i:14083963 original size:159 final size:159
Alignment explanation
Indices: 14083663--14083977 Score: 360
Period size: 159 Copynumber: 2.0 Consensus size: 159
14083653 GGTTGCCTCA
* * * *
14083663 ATCACCATCGACACACGCTAGGCCTTGGTACGAGCGGTTGCCTCGACCACCATCGCCACAAGCCG
1 ATCACCATAGACACACGCTAGGCCTTAGTACGAGCGGTTGCCTCAAACACCATCGCCACAAGCCG
* * * * * *
14083728 GCCCTTGGTGTGAGCTCTTTCCTTGACCATCATCGGCAGAAGATGGCCCCTAGTGCAGGTGGTTA
66 GCCCTTGGTGCGAGCTCTTGCCTCGACCACCATCGGCACAAGATGGCCCCTAGTGCAGGCGGTTA
* *
14083793 AGTCAAACACCATCAGCACACGCTGGTCG
131 ACTCAAACACCATCAGCACACACTGGTCG
* * * * * * *
14083822 ATCACCATAGGCACACGTTGGGCCTTAGTGCGGGCGGTTGCCTCAAACACCATCGGCACAAGCTG
1 ATCACCATAGACACACGCTAGGCCTTAGTACGAGCGGTTGCCTCAAACACCATCGCCACAAGCCG
* * * * * *
14083887 GCCCTTGGTGCGAGCTCTTGCCTCGACCACCATTGGCACACGCTGGGCCCTGGTGCTGGCGGTTA
66 GCCCTTGGTGCGAGCTCTTGCCTCGACCACCATCGGCACAAGATGGCCCCTAGTGCAGGCGGTTA
* ** * *
14083952 CCTTGAGCACCATCGGCACACACTGG
131 ACTCAAACACCATCAGCACACACTGG
14083978 GCCCTGGTGC
Statistics
Matches: 126, Mismatches: 30, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
159 126 1.00
ACGTcount: A:0.20, C:0.33, G:0.27, T:0.20
Consensus pattern (159 bp):
ATCACCATAGACACACGCTAGGCCTTAGTACGAGCGGTTGCCTCAAACACCATCGCCACAAGCCG
GCCCTTGGTGCGAGCTCTTGCCTCGACCACCATCGGCACAAGATGGCCCCTAGTGCAGGCGGTTA
ACTCAAACACCATCAGCACACACTGGTCG
Found at i:14084008 original size:204 final size:204
Alignment explanation
Indices: 14083620--14084022 Score: 454
Period size: 204 Copynumber: 2.0 Consensus size: 204
14083610 TTACCTCAAA
* * * * *
14083620 CACCATCGGCACACATTGTGCCCTGGTACGGGCGGTTGCCTCAATCACCATCGACACACGCTAGG
1 CACCATAGGCACACATTGGGCCCTAGTACGGGCGGTTGCCTCAAACACCATCGACACAAGCTAGG
* * *
14083685 CCTTGGTACGAGCGGTTGCCTCGACCACCATCGCCACAAGCCGGCCCTTGGTGTGAGCTCTTTCC
66 CCTTGGTACGAGCGCTTGCCTCGACCACCATCGCCACAAGCCGGCCCTTGGTGTGAGCGCTTACC
* * * *
14083750 TTGACCATCATCGGCAGAAGATGGCCCCTAGTGCAGGTGGTTAAGTCAAACACCATCAGCACACG
131 TTGACCACCATCGGCACAAGATGGCCCCTAGTGCAGGCGGTTAACTCAAACACCATCAGCACACG
14083815 CTGGTCGAT
196 CTGGTCGAT
* * * *
14083824 CACCATAGGCACACGTTGGGCCTTAGTGCGGGCGGTTGCCTCAAACACCATCGGCACAAGCT-GG
1 CACCATAGGCACACATTGGGCCCTAGTACGGGCGGTTGCCTCAAACACCATCGACACAAGCTAGG
* * * * * * *
14083888 CCCTTGGTGCGAGCTCTTGCCTCGACCACCATTGGCACACGCTGGGCCC-TGGTGCTG-GCGGTT
66 -CCTTGGTACGAGCGCTTGCCTCGACCACCATCGCCACAAGC-CGGCCCTTGGTG-TGAGCGCTT
* * * * * * * *
14083951 ACCTTGAGCACCATCGGCACACA-CTGGGCCCTGGTGCGGGCGGTTACCTCGAACACCATCGGCA
128 ACCTTGACCACCATCGGCACA-AGATGGCCCCTAGTGCAGGCGGTTAACTCAAACACCATCAGCA
*
14084015 CATGCTGG
192 CACGCTGG
14084023 GCCCAGTTAC
Statistics
Matches: 163, Mismatches: 32, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
203 2 0.01
204 153 0.94
205 8 0.05
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (204 bp):
CACCATAGGCACACATTGGGCCCTAGTACGGGCGGTTGCCTCAAACACCATCGACACAAGCTAGG
CCTTGGTACGAGCGCTTGCCTCGACCACCATCGCCACAAGCCGGCCCTTGGTGTGAGCGCTTACC
TTGACCACCATCGGCACAAGATGGCCCCTAGTGCAGGCGGTTAACTCAAACACCATCAGCACACG
CTGGTCGAT
Found at i:14084066 original size:135 final size:134
Alignment explanation
Indices: 14083824--14084071 Score: 311
Period size: 135 Copynumber: 1.8 Consensus size: 134
14083814 GCTGGTCGAT
** * *
14083824 CACCATAGGCACACGTTGGGCCTTAGTGCGGGCGGTTGCCTCAAACACCATCGGCACAAGCTGGC
1 CACCATAGGCACACACTGGGCCCTAGTGCGGGCGGTTACCTCAAACACCATCGGCACAAGCTGGC
* * * *
14083889 CCTTGGTGCGAGCTCTTGCCTCGACCACCATTGGCACACGCTGGGCCCTGGTGCTGGCGGTTACC
66 CCTAGGTACGAGCTCTTACCTCGACCACCATCGGCACACGCT-GGCCCTGGTGCTGGCGGTTACC
14083954 TTGAG
130 TTGAG
* * * *
14083959 CACCATCGGCACACACTGGGCCCTGGTGCGGGCGGTTACCTCGAACACCATCGGCACATGCTGGG
1 CACCATAGGCACACACTGGGCCCTAGTGCGGGCGGTTACCTCAAACACCATCGGCACAAGCT-GG
* * * *
14084024 CCC-AGTTACG-GGTGGTTACCTCGATCACCATCGGCACACGCTGGCCCT
65 CCCTAGGTACGAGCT-CTTACCTCGACCACCATCGGCACACGCTGGCCCT
14084072 TGGTACGGGC
Statistics
Matches: 95, Mismatches: 16, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
134 8 0.08
135 82 0.86
136 5 0.05
ACGTcount: A:0.17, C:0.34, G:0.29, T:0.19
Consensus pattern (134 bp):
CACCATAGGCACACACTGGGCCCTAGTGCGGGCGGTTACCTCAAACACCATCGGCACAAGCTGGC
CCTAGGTACGAGCTCTTACCTCGACCACCATCGGCACACGCTGGCCCTGGTGCTGGCGGTTACCT
TGAG
Found at i:14084081 original size:90 final size:90
Alignment explanation
Indices: 14083819--14084081 Score: 269
Period size: 90 Copynumber: 2.9 Consensus size: 90
14083809 CACACGCTGG
* * * * * * * * *
14083819 TCGATCACCATAGGCACACGTTGGGCCTTA-GTGCGGGCGGTTGCCTCAAACACCATCGGCACAA
1 TCGAACACCATCGGCACACGCTGGGCC-CAGGTACGGGCGGTTACCTCGAGCACCATCGGCACAC
* * *
14083883 GCTGGCCCTTGGTGCGAGCTCTTGCC
65 GCTGGCCCTTGGTGCGGGCGCTTACC
* * * * * * *
14083909 TCGACCACCATTGGCACACGCTGGGCCCTGGTGCTGGCGGTTACCTTGAGCACCATCGGCACACA
1 TCGAACACCATCGGCACACGCTGGGCCCAGGTACGGGCGGTTACCTCGAGCACCATCGGCACACG
*
14083974 CTGGGCCC-TGGTGCGGGCGGTTACC
66 CT-GGCCCTTGGTGCGGGCGCTTACC
* * * *
14083999 TCGAACACCATCGGCACATGCTGGGCCCAGTTACGGGTGGTTACCTCGATCACCATCGGCACACG
1 TCGAACACCATCGGCACACGCTGGGCCCAGGTACGGGCGGTTACCTCGAGCACCATCGGCACACG
*
14084064 CTGGCCCTTGGTACGGGC
66 CTGGCCCTTGGTGCGGGC
14084082 AGTCGCATCG
Statistics
Matches: 142, Mismatches: 28, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
89 5 0.04
90 132 0.93
91 5 0.04
ACGTcount: A:0.17, C:0.33, G:0.30, T:0.20
Consensus pattern (90 bp):
TCGAACACCATCGGCACACGCTGGGCCCAGGTACGGGCGGTTACCTCGAGCACCATCGGCACACG
CTGGCCCTTGGTGCGGGCGCTTACC
Found at i:14090082 original size:26 final size:26
Alignment explanation
Indices: 14090032--14090084 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14090022 CCTGTCCGAT
**
14090032 CTTAGACTGAGAATGAACTTTGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
14090058 CTTAGACT-AGGAATGAACTCCGTATG
1 CTTAGACTGA-GAATGAACTCCGTATG
14090084 C
1 C
14090085 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:14090173 original size:174 final size:174
Alignment explanation
Indices: 14089979--14090451 Score: 403
Period size: 171 Copynumber: 2.7 Consensus size: 174
14089969 ATAAGTTAGG
* * *
14089979 GATTGGCCCGATCCCCCTCTACGTGCTACTGCCGATCCGGCTGCCTGTCCGATCTTAGACTGAGA
1 GATTGGCCCGGTCCCCCTCTACGTGCTACTGCCGATCCCGCTGCCAGTCCGATCTTAGACTGAGA
*
14090044 ATGAACTTTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCA
66 ATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCA
* * *
14090109 TATGGGCGCTCAACCGA-TCGAAAAGGCATAATGCGTAAGCCAAA
131 TACGGGCCCTCAACCGACT-GAAAAGGCAGAATGCGTAAGCCAAA
* * ** * * *
14090153 GATTTGCCTGGTCCCCCTCTACGTGCTA---CCGATCCTACTGCCAGTCC-A-GTT-G-C-CACA
1 GATTGGCCCGGTCCCCCTCTACGTGCTACTGCCGATCCCGCTGCCAGTCCGATCTTAGACTGAGA
** * * * *
14090210 A--CCCTTGGTCCGACTGGGGCTTAGAC-ATGAAGTGAACTCCGTATGCCTAAGCCAACCCATAA
66 ATGAACTTCGT---A-T---GCTTAGACTAGGAA-TGAACTCCGTATGCCTAAGTCAACCCATGA
** * * * * * ***
14090272 AACGAGTGTGCGGGCCCTCAACCGACTGGAAAGGTAGGATGCGTAAGTCGGG
123 AACGAGCATACGGGCCCTCAACCGACTGAAAAGGCAGAATGCGTAAGCCAAA
* * * * * * * * *
14090324 GATTGGCCCGGTCCTCTTCTGCGTGCTGCTGTCGATCCCGCTGTCGGTCTGATCTTAGACTGGGA
1 GATTGGCCCGGTCCCCCTCTACGTGCTACTGCCGATCCCGCTGCCAGTCCGATCTTAGACTGAGA
* * *
14090389 ATGAACTCCGTATGCTTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
66 ATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAG
14090452 TGTGCGGGTG
Statistics
Matches: 226, Mismatches: 53, Indels: 40
0.71 0.17 0.13
Matches are distributed among these distances:
164 5 0.02
166 3 0.01
167 2 0.01
168 2 0.01
169 2 0.01
170 5 0.02
171 111 0.49
172 1 0.00
174 79 0.35
175 4 0.02
176 2 0.01
177 2 0.01
178 2 0.01
179 2 0.01
181 4 0.02
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (174 bp):
GATTGGCCCGGTCCCCCTCTACGTGCTACTGCCGATCCCGCTGCCAGTCCGATCTTAGACTGAGA
ATGAACTTCGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCA
TACGGGCCCTCAACCGACTGAAAAGGCAGAATGCGTAAGCCAAA
Found at i:14090413 original size:26 final size:26
Alignment explanation
Indices: 14090377--14090429 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14090367 TCGGTCTGAT
*
14090377 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14090403 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
14090429 C
1 C
14090430 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:14091366 original size:45 final size:45
Alignment explanation
Indices: 14091292--14091430 Score: 145
Period size: 45 Copynumber: 3.1 Consensus size: 45
14091282 CATAGACTAT
* * ** * ** *
14091292 CATCGGCACAGGCTGTCTTTTGGTACGAGCAATTGCCTCGACCGC
1 CATCGGCACAAGCTGGCCCTTGGTGCGAGCGGTTGCCTCGACCAC
*
14091337 CATCGGCACAAGCTGGGCCC-TGGTGCGAGCGGTTGCCTCGATCAC
1 CATCGGCACAAGCT-GGCCCTTGGTGCGAGCGGTTGCCTCGACCAC
* ** *
14091382 CATTGGCACGTGCTGGCCCTTGGTGCGAGCGGTTACCTCGACCAC
1 CATCGGCACAAGCTGGCCCTTGGTGCGAGCGGTTGCCTCGACCAC
14091427 CATC
1 CATC
14091431 AGTAGAAGAT
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
44 5 0.06
45 70 0.91
46 2 0.03
ACGTcount: A:0.16, C:0.33, G:0.29, T:0.22
Consensus pattern (45 bp):
CATCGGCACAAGCTGGCCCTTGGTGCGAGCGGTTGCCTCGACCAC
Found at i:14091405 original size:90 final size:90
Alignment explanation
Indices: 14091292--14091487 Score: 205
Period size: 90 Copynumber: 2.2 Consensus size: 90
14091282 CATAGACTAT
* * ** * * * *
14091292 CATCGGCACAGGCTGTCTTTTGGTACGAGCAATTGCCTCGACCGCCATCGGCACAAGCTGGGCCC
1 CATCGGCACATGCTGGCCCTTGGTACGAGCAATTACCTCGACCACCATCAGCACAAGATGGGCCC
* *
14091357 TGGTGCGA-GCGGTTGCCTCGATCAC
66 TAGTG-GAGGCGGTTGCCTCAATCAC
* * * ** * *
14091382 CATTGGCACGTGCTGGCCCTTGGTGCGAGCGGTTACCTCGACCACCATCAGTAGAAGATGGGCCC
1 CATCGGCACATGCTGGCCCTTGGTACGAGCAATTACCTCGACCACCATCAGCACAAGATGGGCCC
* *
14091447 TAGTGTAGGCGGTTGCGTCAATCAC
66 TAGTGGAGGCGGTTGCCTCAATCAC
14091472 CATCGGCACATGCTGG
1 CATCGGCACATGCTGG
14091488 GTCCTAGTAC
Statistics
Matches: 84, Mismatches: 21, Indels: 2
0.79 0.20 0.02
Matches are distributed among these distances:
89 1 0.01
90 83 0.99
ACGTcount: A:0.18, C:0.30, G:0.31, T:0.21
Consensus pattern (90 bp):
CATCGGCACATGCTGGCCCTTGGTACGAGCAATTACCTCGACCACCATCAGCACAAGATGGGCCC
TAGTGGAGGCGGTTGCCTCAATCAC
Found at i:14097450 original size:45 final size:45
Alignment explanation
Indices: 14097374--14097577 Score: 153
Period size: 45 Copynumber: 4.5 Consensus size: 45
14097364 GGCACATGCA
* * ** * *
14097374 TCGACCATCATCGGCACAGGCT-ACCCTTTGGTACGGGCACTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCC-TTGGTGCGGGCAGTTGCC
* *
14097419 TCGACCGCCATCGGCACAAGCTGGGCCTTGGTGCAGGC-GATTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCTTGGTGCGGGCAG-TTGCC
* * * * * * * * *
14097464 TCGACCACTATCGGTAGAAGATGGGCCCTAGTGTGAGCGGTTGCC
1 TCGACCACCATCGGCACAAGCTGGGCCTTGGTGCGGGCAGTTGCC
* * **
14097509 TCGACCACCATCAGCACACA-TTGGGCCTTGGTGCGGGTGGTTGCC
1 TCGACCACCATCGGCACA-AGCTGGGCCTTGGTGCGGGCAGTTGCC
* *
14097554 TCGAACACCATCGGCACACGCTGG
1 TCGACCACCATCGGCACAAGCTGG
14097578 TCGATCACCA
Statistics
Matches: 122, Mismatches: 32, Indels: 10
0.74 0.20 0.06
Matches are distributed among these distances:
45 118 0.97
46 4 0.03
ACGTcount: A:0.18, C:0.32, G:0.30, T:0.20
Consensus pattern (45 bp):
TCGACCACCATCGGCACAAGCTGGGCCTTGGTGCGGGCAGTTGCC
Found at i:14109998 original size:25 final size:25
Alignment explanation
Indices: 14109955--14110003 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
14109945 ACACGTTGGG
*
14109955 CCCTGGTGTGGCCGGTTGCCTTGAC
1 CCCTGGTGTGGCCGATTGCCTTGAC
**
14109980 CCCTGGTGTGGGTGATTGCCTTGA
1 CCCTGGTGTGGCCGATTGCCTTGA
14110004 GCACCATCGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.06, C:0.27, G:0.37, T:0.31
Consensus pattern (25 bp):
CCCTGGTGTGGCCGATTGCCTTGAC
Found at i:14110044 original size:45 final size:45
Alignment explanation
Indices: 14109980--14110077 Score: 115
Period size: 45 Copynumber: 2.2 Consensus size: 45
14109970 TTGCCTTGAC
* * *
14109980 CCCTGGTGTGGGTGATTGCCTTGAGCACCATCGGCACACGTTGGG
1 CCCTGGTGTAGGCGATTGCCTCGAGCACCATCGGCACACGTTGGG
* * * * *
14110025 CCCTGGTGTAGGCGGTTGCCTCGATCACCATTGGCATATGTTGGG
1 CCCTGGTGTAGGCGATTGCCTCGAGCACCATCGGCACACGTTGGG
*
14110070 CCTTGGTG
1 CCCTGGTG
14110078 GGAGCGGTTA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.12, C:0.26, G:0.35, T:0.28
Consensus pattern (45 bp):
CCCTGGTGTAGGCGATTGCCTCGAGCACCATCGGCACACGTTGGG
Found at i:14110085 original size:45 final size:45
Alignment explanation
Indices: 14109995--14110138 Score: 110
Period size: 45 Copynumber: 3.2 Consensus size: 45
14109985 GTGTGGGTGA
* * *
14109995 TTGCCTTGAGCACCATCGGCACACGTTGGGCCCTGGTGTAGGCGG
1 TTGCCTCGAACACCATCGGCACACGTTGGGCCCTGGTGGAGGCGG
* * * * *
14110040 TTGCCTCGATCACCATTGGCATATGTTGGGCCTTGGTGG-GAGCGG
1 TTGCCTCGAACACCATCGGCACACGTTGGGCCCTGGTGGAG-GCGG
** * * * * * * *
14110085 TTATCTCGAACACCATCGACCCACATTGGGTCCTAGTGCAGGTGG
1 TTGCCTCGAACACCATCGGCACACGTTGGGCCCTGGTGGAGGCGG
*
14110130 TTACCTCGA
1 TTGCCTCGA
14110139 GCCCTGGTGC
Statistics
Matches: 75, Mismatches: 22, Indels: 4
0.74 0.22 0.04
Matches are distributed among these distances:
44 1 0.01
45 73 0.97
46 1 0.01
ACGTcount: A:0.17, C:0.27, G:0.31, T:0.26
Consensus pattern (45 bp):
TTGCCTCGAACACCATCGGCACACGTTGGGCCCTGGTGGAGGCGG
Found at i:14110214 original size:45 final size:45
Alignment explanation
Indices: 14110165--14110295 Score: 133
Period size: 45 Copynumber: 2.9 Consensus size: 45
14110155 TTACCTCAAG
* *
14110165 CACCAACGACACACGATGGGCCCTGGTGCGGGCGGTTGCCTTGAA
1 CACCATCGACACACGATGGGCCCTAGTGCGGGCGGTTGCCTTGAA
* * *
14110210 CACCATC-AC-CGTACGCTGGGCCCTAGTGCGGGTGGTTGCCTCG-A
1 CACCATCGACAC--ACGATGGGCCCTAGTGCGGGCGGTTGCCTTGAA
* * * *
14110254 CTACCATCGACAGAAGATGGCCCCTAGTACGGGCGGTTGCCT
1 C-ACCATCGACACACGATGGGCCCTAGTGCGGGCGGTTGCCT
14110296 CAACCATCAT
Statistics
Matches: 70, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
43 1 0.01
44 4 0.06
45 63 0.90
46 2 0.03
ACGTcount: A:0.18, C:0.32, G:0.31, T:0.18
Consensus pattern (45 bp):
CACCATCGACACACGATGGGCCCTAGTGCGGGCGGTTGCCTTGAA
Found at i:14110316 original size:45 final size:45
Alignment explanation
Indices: 14110238--14110560 Score: 201
Period size: 45 Copynumber: 7.2 Consensus size: 45
14110228 GGCCCTAGTG
* * * ** *
14110238 CGGGTGGTTGCCTCGACTACCATCGACAGAAGATGGCCCCTAGTA
1 CGGGCGGTTGCCTCAACCACCATCGGTAGAAGATGGCCCCTGGTA
* * *
14110283 CGGGCGGTTGCCTCAACCATCATCGGTAAAAGAT-GACCCTCGGTA
1 CGGGCGGTTGCCTCAACCACCATCGGTAGAAGATGGCCCCT-GGTA
* * * * * *
14110328 CGGGCAGTTACGCC-GAA-CACCATCGGTACACGTTGGGCCCTGGTA
1 CGGGCGGTT--GCCTCAACCACCATCGGTAGAAGATGGCCCCTGGTA
* * * * *
14110373 CGGGCAGTTACCTCGAA-CACCATCGGTATG-TGCTGG-CCTTGGTA
1 CGGGCGGTTGCCTC-AACCACCATCGGTA-GAAGATGGCCCCTGGTA
* * * * * * * *
14110417 CGGGAGGTTACCTCAAGCACCATCGTTACAAG-TCGACCCTTGGTG
1 CGGGCGGTTGCCTCAACCACCATCGGTAGAAGAT-GGCCCCTGGTA
** * *
14110462 CGGGCTCTTGCCTCGACCACCATCGGTAGAAGATGGCCCTTGGTA
1 CGGGCGGTTGCCTCAACCACCATCGGTAGAAGATGGCCCCTGGTA
* * * * *
14110507 CGGGCGGTTACCTCGACCACCATCAGTAGATGATGGCCCCTAGTA
1 CGGGCGGTTGCCTCAACCACCATCGGTAGAAGATGGCCCCTGGTA
*
14110552 CGGGTGGTT
1 CGGGCGGTT
14110561 ACATCGAACA
Statistics
Matches: 219, Mismatches: 47, Indels: 24
0.76 0.16 0.08
Matches are distributed among these distances:
43 5 0.02
44 36 0.16
45 167 0.76
46 8 0.04
47 3 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.21
Consensus pattern (45 bp):
CGGGCGGTTGCCTCAACCACCATCGGTAGAAGATGGCCCCTGGTA
Found at i:14110798 original size:45 final size:45
Alignment explanation
Indices: 14110724--14111061 Score: 216
Period size: 45 Copynumber: 7.5 Consensus size: 45
14110714 AAAAGATGGC
* * * ** *
14110724 CCCTGGTGCAGGCACTTACGTCAAACACCATCATC-CTATGCTGGG
1 CCCTGGTGCAGGCAGTTACCTCGAACACCATCGGCAC-ATGCTGAG
* * * * * *
14110769 CCCTGGTGCAGGCAGTTACCTTGAGCACCAT-GGTAGAAGATG-G
1 CCCTGGTGCAGGCAGTTACCTCGAACACCATCGGCACATGCTGAG
* * * *
14110812 CCCCTGGTGCGGGCGGTTGCCACGAACACCATCGGCACATGCTGAG
1 -CCCTGGTGCAGGCAGTTACCTCGAACACCATCGGCACATGCTGAG
*
14110858 CCCTGGTGCAGGCAGTTACCTCGAGCACCATCGGCACATGCTGAG
1 CCCTGGTGCAGGCAGTTACCTCGAACACCATCGGCACATGCTGAG
* * * * * ** * *
14110903 CCCTGGTGCGGGCGGTTGCCTTGATCACCATCGTTACACGCTGGG
1 CCCTGGTGCAGGCAGTTACCTCGAACACCATCGGCACATGCTGAG
*** ** ** * * * *
14110948 CCCTGGTATGGGTGGTTGTCTCGATCACCATCGACACATACTGGG
1 CCCTGGTGCAGGCAGTTACCTCGAACACCATCGGCACATGCTGAG
* * * * *
14110993 CCCTGGTGC-GAGCGGTTACCTTGAACACCATCGGCCCACGCTGGG
1 CCCTGGTGCAG-GCAGTTACCTCGAACACCATCGGCACATGCTGAG
* * *
14111038 CCCTTGTGCAGGCGGTTGCCTCGA
1 CCCTGGTGCAGGCAGTTACCTCGA
14111062 GCCCTGGTGT
Statistics
Matches: 229, Mismatches: 58, Indels: 12
0.77 0.19 0.04
Matches are distributed among these distances:
43 1 0.00
44 30 0.13
45 196 0.86
46 2 0.01
ACGTcount: A:0.17, C:0.31, G:0.30, T:0.21
Consensus pattern (45 bp):
CCCTGGTGCAGGCAGTTACCTCGAACACCATCGGCACATGCTGAG
Found at i:14110840 original size:89 final size:90
Alignment explanation
Indices: 14110747--14110922 Score: 241
Period size: 89 Copynumber: 2.0 Consensus size: 90
14110737 ACTTACGTCA
* * * * *
14110747 AACACCATCATC-CTATGCTGGGCCCTGGTGCAGGCAGTTACCTTGAGCACCAT-GGTAGAAGAT
1 AACACCATCAGCAC-ATGCTGAGCCCTGGTGCAGGCAGTTACCTCGAGCACCATCGGCACAAGAT
14110810 G-GCCCCTGGTGCGGGCGGTTGCCACG
65 GAG-CCCTGGTGCGGGCGGTTGCCACG
* * *
14110836 AACACCATCGGCACATGCTGAGCCCTGGTGCAGGCAGTTACCTCGAGCACCATCGGCACATGCTG
1 AACACCATCAGCACATGCTGAGCCCTGGTGCAGGCAGTTACCTCGAGCACCATCGGCACAAGATG
14110901 AGCCCTGGTGCGGGCGGTTGCC
66 AGCCCTGGTGCGGGCGGTTGCC
14110923 TTGATCACCA
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
89 47 0.62
90 28 0.37
91 1 0.01
ACGTcount: A:0.19, C:0.31, G:0.31, T:0.19
Consensus pattern (90 bp):
AACACCATCAGCACATGCTGAGCCCTGGTGCAGGCAGTTACCTCGAGCACCATCGGCACAAGATG
AGCCCTGGTGCGGGCGGTTGCCACG
Found at i:14110951 original size:90 final size:89
Alignment explanation
Indices: 14110763--14111063 Score: 316
Period size: 90 Copynumber: 3.4 Consensus size: 89
14110753 ATCATCCTAT
* * * * *
14110763 GCTGGGCCCTGGTGCAGGCAGTTACCTTGAGCACCAT-GGTAGAAGATGGCCCCTGGTGCGGGCG
1 GCTGGGCCCTGGTGCAGGCAGTTACCTCGAGCACCATCGGCACATGCTGG-CCCTGGTGCGGGCG
** *
14110827 GTTGCCACGAACACCATCGGCACAT
65 GTTGCCTTGAACACCATCGGCACAC
*
14110852 GCTGAGCCCTGGTGCAGGCAGTTACCTCGAGCACCATCGGCACATGCTGAGCCCTGGTGCGGGCG
1 GCTGGGCCCTGGTGCAGGCAGTTACCTCGAGCACCATCGGCACATGCTG-GCCCTGGTGCGGGCG
* **
14110917 GTTGCCTTGATCACCATCGTTACAC
65 GTTGCCTTGAACACCATCGGCACAC
*** ** ** * * * *
14110942 GCTGGGCCCTGGTATGGGTGGTTGTCTCGATCACCATCGACACATACTGGGCCCTGGTGCGAGCG
1 GCTGGGCCCTGGTGCAGGCAGTTACCTCGAGCACCATCGGCACATGCT-GGCCCTGGTGCGGGCG
* *
14111007 GTTACCTTGAACACCATCGGCCCAC
65 GTTGCCTTGAACACCATCGGCACAC
* * *
14111032 GCTGGGCCCTTGTGCAGGCGGTTGCCTCGAGC
1 GCTGGGCCCTGGTGCAGGCAGTTACCTCGAGC
14111064 CCTGGTGTGG
Statistics
Matches: 173, Mismatches: 36, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
89 35 0.20
90 136 0.79
91 2 0.01
ACGTcount: A:0.16, C:0.31, G:0.32, T:0.21
Consensus pattern (89 bp):
GCTGGGCCCTGGTGCAGGCAGTTACCTCGAGCACCATCGGCACATGCTGGCCCTGGTGCGGGCGG
TTGCCTTGAACACCATCGGCACAC
Found at i:14111011 original size:135 final size:134
Alignment explanation
Indices: 14110724--14111063 Score: 360
Period size: 135 Copynumber: 2.5 Consensus size: 134
14110714 AAAAGATGGC
* * * ** * *
14110724 CCCTGGTGCAGGCACTTACGTCAAACACCATCATC-CTATGCTGGGCCCTGGTGCAGGCAGTTAC
1 CCCTGGTGCAGGCAGTTACCTCGAACACCATCGGCAC-ATGCTGGGCCCTGGTGCAGGCGGTTGC
* * * *
14110788 CTTGAGCACCATGGTAGAAGATGGCCCCTGGTGCGGGCGGTTGCCACGAACACCATCGGCACATG
65 CTTGAGCACCATGGTACAAGATGGCCCCTGGTACGGGCGGTTGCCACGAACACCATCGACACATA
14110853 CTGAG
130 CTGAG
* * *
14110858 CCCTGGTGCAGGCAGTTACCTCGAGCACCATCGGCACATGCTGAGCCCTGGTGCGGGCGGTTGCC
1 CCCTGGTGCAGGCAGTTACCTCGAACACCATCGGCACATGCTGGGCCCTGGTGCAGGCGGTTGCC
* * * * * * * * * *
14110923 TTGATCACCATCGTTACACGCTGGGCCCTGGTATGGGTGGTTGTCTCGATCACCATCGACACATA
66 TTGAGCACCAT-GGTACAAGATGGCCCCTGGTACGGGCGGTTGCCACGAACACCATCGACACATA
*
14110988 CTGGG
130 CTGAG
* * * * *
14110993 CCCTGGTGC-GAGCGGTTACCTTGAACACCATCGGCCCACGCTGGGCCCTTGTGCAGGCGGTTGC
1 CCCTGGTGCAG-GCAGTTACCTCGAACACCATCGGCACATGCTGGGCCCTGGTGCAGGCGGTTGC
*
14111057 CTCGAGC
65 CTTGAGC
14111064 CCTGGTGTGG
Statistics
Matches: 168, Mismatches: 35, Indels: 5
0.81 0.17 0.02
Matches are distributed among these distances:
134 64 0.38
135 104 0.62
ACGTcount: A:0.17, C:0.31, G:0.30, T:0.21
Consensus pattern (134 bp):
CCCTGGTGCAGGCAGTTACCTCGAACACCATCGGCACATGCTGGGCCCTGGTGCAGGCGGTTGCC
TTGAGCACCATGGTACAAGATGGCCCCTGGTACGGGCGGTTGCCACGAACACCATCGACACATAC
TGAG
Found at i:14111066 original size:25 final size:25
Alignment explanation
Indices: 14111037--14111088 Score: 68
Period size: 25 Copynumber: 2.1 Consensus size: 25
14111027 CCCACGCTGG
*
14111037 GCCCTTGTGCAGGCGGTTGCCTCGA
1 GCCCTGGTGCAGGCGGTTGCCTCGA
** *
14111062 GCCCTGGTGTGGGCGGTTGCCTTGA
1 GCCCTGGTGCAGGCGGTTGCCTCGA
14111087 GC
1 GC
14111089 ACCATCGGCA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.06, C:0.29, G:0.40, T:0.25
Consensus pattern (25 bp):
GCCCTGGTGCAGGCGGTTGCCTCGA
Found at i:14111113 original size:45 final size:44
Alignment explanation
Indices: 14111062--14111177 Score: 142
Period size: 45 Copynumber: 2.6 Consensus size: 44
14111052 GTTGCCTCGA
14111062 GCCCTGGTGTGGGCGGTTGCCTTGAGCACCATCGGCACACAATGG
1 GCCCTGGTGTGGGCGGTTGCCTTGAGCACCATCGGCACACAAT-G
* * * * * *
14111107 GCCCTGGTATGGGCTGTTGCCTCGAACACCATCGGCCCACACTG
1 GCCCTGGTGTGGGCGGTTGCCTTGAGCACCATCGGCACACAATG
* * *
14111151 GCCCTTGTGCGGGCGATTGCCTTGAGC
1 GCCCTGGTGTGGGCGGTTGCCTTGAGC
14111178 CCCGGTGCGA
Statistics
Matches: 58, Mismatches: 13, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
44 21 0.36
45 37 0.64
ACGTcount: A:0.14, C:0.32, G:0.33, T:0.22
Consensus pattern (44 bp):
GCCCTGGTGTGGGCGGTTGCCTTGAGCACCATCGGCACACAATG
Found at i:14111126 original size:70 final size:70
Alignment explanation
Indices: 14110992--14111131 Score: 172
Period size: 70 Copynumber: 2.0 Consensus size: 70
14110982 CACATACTGG
* ** * *
14110992 GCCCTGGTGCGAGCGGTTACCTTGAACACCATCGGCCCACGCTGGGCCCTTGTGCAGGCGGTTGC
1 GCCCTGGTGCGAGCGGTTACCTTGAACACCATCGGCACACAATGGGCCCTGGTACAGGCGGTTGC
14111057 CTCGA
66 CTCGA
* * * * ** *
14111062 GCCCTGGTGTGGGCGGTTGCCTTGAGCACCATCGGCACACAATGGGCCCTGGTATGGGCTGTTGC
1 GCCCTGGTGCGAGCGGTTACCTTGAACACCATCGGCACACAATGGGCCCTGGTACAGGCGGTTGC
14111127 CTCGA
66 CTCGA
14111132 ACACCATCGG
Statistics
Matches: 58, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
70 58 1.00
ACGTcount: A:0.13, C:0.31, G:0.34, T:0.21
Consensus pattern (70 bp):
GCCCTGGTGCGAGCGGTTACCTTGAACACCATCGGCACACAATGGGCCCTGGTACAGGCGGTTGC
CTCGA
Found at i:14111195 original size:25 final size:25
Alignment explanation
Indices: 14111167--14111225 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
14111157 GTGCGGGCGA
* *
14111167 TTGCCTTGAGCCCCGGTGCGAGTGG
1 TTGCCTCGAGCCCCGGTGCAAGTGG
* *
14111192 TTGCCTCGATCCCTGGTGCAAGTGG
1 TTGCCTCGAGCCCCGGTGCAAGTGG
14111217 TTGCCTCGA
1 TTGCCTCGA
14111226 CCACCATCGA
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.10, C:0.29, G:0.34, T:0.27
Consensus pattern (25 bp):
TTGCCTCGAGCCCCGGTGCAAGTGG
Found at i:14111401 original size:45 final size:45
Alignment explanation
Indices: 14111295--14111867 Score: 233
Period size: 45 Copynumber: 12.7 Consensus size: 45
14111285 AGATGGCCTT
* * * * * *
14111295 TGGTACGAGCAATTACGTCAAACACCATTGGCACATGCTGGGCCC
1 TGGTACGGGCAGTTACCTCGAACACCATCGACACATGCTGGGCCC
** * *
14111340 TGGTGGGGGC-GATTACCTCGGACACCATCGACACATGCTAGGCCC
1 TGGTACGGGCAG-TTACCTCGAACACCATCGACACATGCTGGGCCC
** * * * * * *
14111385 TGGTACGGGTGGTTACCTCGACCACTATCGACAGAAGATGGCCCC
1 TGGTACGGGCAGTTACCTCGAACACCATCGACACATGCTGGGCCC
* * * * * *
14111430 TGGTGCGGGCAGTTGCGTCGAACACCATCGACACACGTTGGGACC
1 TGGTACGGGCAGTTACCTCGAACACCATCGACACATGCTGGGCCC
* * * * *
14111475 TGGTACGGGTAGTTGCCTCGAACACCATCGGCATAAGCT-GGCCC
1 TGGTACGGGCAGTTACCTCGAACACCATCGACACATGCTGGGCCC
* * * ** * * * ** * * *
14111519 GTAGTGCAGGCTCTTGCCTTGACCACCATCGGTAGAAGAT-GGCCTC
1 -TGGTACGGGCAGTTACCTCGAACACCATCGACACATGCTGGGCC-C
* * * * * ** * *
14111565 TGGTGCGGGCGGTTACGTCAAACACCA-CCATCTTACGTTGGGCCC
1 TGGTACGGGCAGTTACCTCGAACACCATCGA-CACATGCTGGGCCC
* *** * * *
14111610 TGGTGCACACGGTTACCCCGAACACCATCGACACACGCTGGGCCC
1 TGGTACGGGCAGTTACCTCGAACACCATCGACACATGCTGGGCCC
* * * * * * * *
14111655 TAGTGCAGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGGCCC
1 TGGTACGGGCAGTTACCTCGAACACCATCGACACATGCTGGGCCC
* * * * ** * *
14111700 TAGTGCGAGCGGTTTTCTCGAACACCATCGACACAAGC-CGGCCC
1 TGGTACGGGCAGTTACCTCGAACACCATCGACACATGCTGGGCCC
* * * * * *
14111744 TTGGTGCGGG-ATCTTGCCTCGATCACCATCGGCACACGCTGGGCCC
1 -TGGTACGGGCA-GTTACCTCGAACACCATCGACACATGCTGGGCCC
* * * *
14111790 TGGTATGGGC-GATTACCTCGAGCACCATTGACACATGCTGGGCCT
1 TGGTACGGGCAG-TTACCTCGAACACCATCGACACATGCTGGGCCC
* * * * *
14111835 TGGTATGGGCGGTTGCTTCGAGCACCATCGACA
1 TGGTACGGGCAGTTACCTCGAACACCATCGACA
14111868 TAAGCTGACC
Statistics
Matches: 400, Mismatches: 115, Indels: 26
0.74 0.21 0.05
Matches are distributed among these distances:
44 10 0.03
45 376 0.94
46 14 0.04
ACGTcount: A:0.20, C:0.31, G:0.29, T:0.20
Consensus pattern (45 bp):
TGGTACGGGCAGTTACCTCGAACACCATCGACACATGCTGGGCCC
Found at i:14111494 original size:135 final size:134
Alignment explanation
Indices: 14111216--14111591 Score: 301
Period size: 135 Copynumber: 2.8 Consensus size: 134
14111206 GGTGCAAGTG
** *
14111216 GTTGCCTC-GACCACCATCGACAAAAGATGGCCCCTGGTGTGGGTGGTTGCCTCGACCACCATCA
1 GTTGCCTCGGA-CACCATCGACAAAAGATGGCCCCTGGTACGGGTGGTTACCTCGACCACCATCA
** * * * * *
14111280 GCAGAAGATGGCCTTTGGTACGAGCAATTACGTCAAACACCATTGGCACATGCTGGGCCCTGGTG
65 GCAGAAGATGGCCCCTGGTACGAGCAATTACGTCAAACACCATCGACACACGCTGGGACCTGGTC
*
14111345 GGGGC
130 GGGGA
* * * * *
14111350 GATTACCTCGGACACCATCGACACATGCTAGG-CCCTGGTACGGGTGGTTACCTCGACCACTATC
1 G-TTGCCTCGGACACCATCGACAAAAGAT-GGCCCCTGGTACGGGTGGTTACCTCGACCACCATC
* * * * * *
14111414 -GACAGAAGATGGCCCCTGGTGCGGGCAGTTGCGTCGAACACCATCGACACACGTTGGGACCTGG
64 AG-CAGAAGATGGCCCCTGGTACGAGCAATTACGTCAAACACCATCGACACACGCTGGGACCTGG
*
14111478 TACGGGTA
128 T-CGGGGA
* * * * * * * * * * * *
14111486 GTTGCCTCGAACACCATCGGCATAAGCTGGCCCGTAGTGCAGGCT-CTTGCCTTGACCACCATCG
1 GTTGCCTCGGACACCATCGACAAAAGATGGCCCCTGGTAC-GGGTGGTTACCTCGACCACCATCA
* * * * **
14111550 GTAGAAGATGGCCTCTGGTGCGGGCGGTTACGTCAAACACCA
65 GCAGAAGATGGCCCCTGGTACGAGCAATTACGTCAAACACCA
14111592 CCATCTTACG
Statistics
Matches: 193, Mismatches: 41, Indels: 15
0.78 0.16 0.06
Matches are distributed among these distances:
134 4 0.02
135 177 0.92
136 12 0.06
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (134 bp):
GTTGCCTCGGACACCATCGACAAAAGATGGCCCCTGGTACGGGTGGTTACCTCGACCACCATCAG
CAGAAGATGGCCCCTGGTACGAGCAATTACGTCAAACACCATCGACACACGCTGGGACCTGGTCG
GGGA
Found at i:14111771 original size:135 final size:135
Alignment explanation
Indices: 14111632--14111912 Score: 339
Period size: 135 Copynumber: 2.1 Consensus size: 135
14111622 TTACCCCGAA
* * * *
14111632 CACCATCGACACACGCTGGGCCCTAGTGCAGGCGGTTGCCTCGAGCACCATCGGCACACGCTGGG
1 CACCATCGACACACGCTGGGCCCTAGTACAGGCGATTACCTCGAGCACCATCGACACACGCTGGG
* * *
14111697 CCCTAGTGCGAGCGGTT-TTCTCGAACACCATCGACACAAGCCGGCCCTTGGTGCGGGATCTTGC
66 CCCTAGTACGAGCGGTTGCT-TCGAACACCATCGACACAAGCCGACCCTTGGTGCGGGATCTTGC
*
14111761 CTCGAT
130 CTCGAC
* * ** * *
14111767 CACCATCGGCACACGCTGGGCCCTGGTATGGGCGATTACCTCGAGCACCATTGACACATGCTGGG
1 CACCATCGACACACGCTGGGCCCTAGTACAGGCGATTACCTCGAGCACCATCGACACACGCTGGG
* * * * * * * *
14111832 CCTTGGTATGGGCGGTTGCTTCGAGCACCATCGACATAAGCTGACCCTTGGTGCGGGCTCTTGCC
66 CCCTAGTACGAGCGGTTGCTTCGAACACCATCGACACAAGCCGACCCTTGGTGCGGGATCTTGCC
14111897 TCGAC
131 TCGAC
*
14111902 CACAATCGACA
1 CACCATCGACA
14111913 GAAGATGGCC
Statistics
Matches: 121, Mismatches: 24, Indels: 2
0.82 0.16 0.01
Matches are distributed among these distances:
135 120 0.99
136 1 0.01
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (135 bp):
CACCATCGACACACGCTGGGCCCTAGTACAGGCGATTACCTCGAGCACCATCGACACACGCTGGG
CCCTAGTACGAGCGGTTGCTTCGAACACCATCGACACAAGCCGACCCTTGGTGCGGGATCTTGCC
TCGAC
Found at i:14119525 original size:26 final size:26
Alignment explanation
Indices: 14119474--14119526 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14119464 GCTGTCCGAT
*
14119474 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14119500 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14119526 C
1 C
14119527 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14119848 original size:171 final size:170
Alignment explanation
Indices: 14119403--14119861 Score: 416
Period size: 171 Copynumber: 2.7 Consensus size: 170
14119393 GATCGGAGGC
* * * *
14119403 GCAGGATGCGCAAGTCGGGGATCGGCTCGGTCCCCCTCTGCGTGCTACTACCGATCCAGCTG-CT
1 GCAGGATGCGCAAGTCGGGGATCGGCTCGATCCCCCTCTGCGTGCTGCTACCGATCCCGCTGTCG
*
14119467 GTCCGATCTTAGACTGGGAATGAACTTCAT-ATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
66 GT-CGATCTTAGACTGGGAATGAA--TC-TGAT-CTTAGACTGGGAATGAACTCCGTATGCCCAA
* * * ** *
14119531 GTCAACCCACGAAATGAGCGTGCGGGCACTCAGCTGGTCGGAGAG
126 GCCAACCCACAAAATGAGCGTGCGAGCACTCAGCTGACCAGAGAG
** * * * * *
14119576 GCATAATGTGCAAGTCGGGGA-CTTGCCCGTTCCCCCTCTGC--G-TGCTACCGATCCCACTGTC
1 GCAGGATGCGCAAGTCGGGGATC-GGCTCGATCCCCCTCTGCGTGCTGCTACCGATCCCGCTGTC
* * * * * *** **
14119637 GGTCCAGCTACCACAACCCTTGGTCCG-A-CTAGGGCTTAGACAT-GGAATGAACTCCGTATGCC
65 GGTCGATCT--TA-GA--CTGGGAATGAATCT-GATCTTAGAC-TGGGAATGAACTCCGTATGCC
* **
14119699 CAAGCCAACCCACAAAATGAGCGTGTGAGTGCTCAG-TCGACCAGAGAG
123 CAAGCCAACCCACAAAATGAGCGTGCGAGCACTCAGCT-GACCAGAGAG
* *
14119747 GCAGGATGCGCAAGCCAGGGATCGGCTCGATCCCCCTCTGCGTGCTGCTACCGATCCCGCTGTCG
1 GCAGGATGCGCAAGTCGGGGATCGGCTCGATCCCCCTCTGCGTGCTGCTACCGATCCCGCTGTCG
14119812 GTCTGATCTTAGACTGGGAATGAATCTGATCTTAGACTGGGAATGAACTC
66 GTC-GATCTTAGACTGGGAATGAATCTGATCTTAGACTGGGAATGAACTC
14119862 TATATGCTTA
Statistics
Matches: 218, Mismatches: 49, Indels: 40
0.71 0.16 0.13
Matches are distributed among these distances:
170 26 0.12
171 118 0.54
172 7 0.03
173 36 0.17
174 23 0.11
175 8 0.04
ACGTcount: A:0.22, C:0.29, G:0.28, T:0.21
Consensus pattern (170 bp):
GCAGGATGCGCAAGTCGGGGATCGGCTCGATCCCCCTCTGCGTGCTGCTACCGATCCCGCTGTCG
GTCGATCTTAGACTGGGAATGAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCCAAGCCAA
CCCACAAAATGAGCGTGCGAGCACTCAGCTGACCAGAGAG
Found at i:14119878 original size:26 final size:24
Alignment explanation
Indices: 14119813--14119887 Score: 116
Period size: 23 Copynumber: 3.1 Consensus size: 24
14119803 CCGCTGTCGG
14119813 TCTGATCTTAGACTGGGAATGAA-
1 TCTGATCTTAGACTGGGAATGAAC
14119836 TCTGATCTTAGACTGGGAATGAAC
1 TCTGATCTTAGACTGGGAATGAAC
*
14119860 TCTATATGCTTAGACTGGGAATGAAC
1 TCT-GAT-CTTAGACTGGGAATGAAC
14119886 TC
1 TC
14119888 CGTATGCCTA
Statistics
Matches: 48, Mismatches: 1, Indels: 3
0.92 0.02 0.06
Matches are distributed among these distances:
23 23 0.48
24 3 0.06
25 2 0.04
26 20 0.42
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (24 bp):
TCTGATCTTAGACTGGGAATGAAC
Found at i:14119893 original size:26 final size:26
Alignment explanation
Indices: 14119819--14119894 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
14119809 TCGGTCTGAT
14119819 CTTAGACTGGGAATGAA-TCTG-AT-
1 CTTAGACTGGGAATGAACTCTGTATG
*
14119842 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14119868 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14119894 C
1 C
14119895 CTAAGTCAAC
Statistics
Matches: 47, Mismatches: 3, Indels: 3
0.89 0.06 0.06
Matches are distributed among these distances:
23 17 0.36
24 3 0.06
25 2 0.04
26 25 0.53
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14120151 original size:368 final size:365
Alignment explanation
Indices: 14119471--14120167 Score: 1022
Period size: 368 Copynumber: 1.9 Consensus size: 365
14119461 GCTGCTGTCC
14119471 GATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * ** * **
14119536 CCCACGAAATGAGCGTGCGGGCACTCAGCTGGTCGGAGAGGCATAATGTGCAAGTCGGGGACTTG
66 CCCACAAAATGACCGTGCGGGCACTCAGCCGATCGGAGAGGCATAATGCACAAGCCGGGGACTAA
* ** * *
14119601 CCCGTTCCCCCTCTGCGTGCTACCGATCCCACTGTCGGTCCAGCTACCACAACCCTTGGTCCGAC
131 CCCGGTCCCCCTCTGCGTGCTACCGATCCCACTACCAGTCCAGCTACCACAACCCTCGGTCCGAC
* * *
14119666 TAGGGCTTAGACATGGAATGAACTCCGTATGCCCAAGCCAACCCACAAAATGAGCGTGTGAGTGC
196 TAGGGCTTAGACATGGAATGAACTCCGTATGCCCAACCCAACCCACAAAATGAGCGTGAGAGCGC
* *
14119731 TCAGTCGACCAGAGAGGCAGGATGCGCAAGCCAGGGATCGGCTCGATCCCCCTCTGCGTGCTGCT
261 TCAGCCGACCAGAGAGGCAGGATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCT--GTG-TGCT
14119796 ACCGATCCCGCTGTCGGTCTGATCTTAGACTGGGAATGAATCT
323 ACCGATCCCGCTGTCGGTCTGATCTTAGACTGGGAATGAATCT
14119839 GATCTTAGACTGGGAATGAAC-TCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
1 GATCTTAGACTGGGAATGAACTTC-ATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* *
14119903 ACCCACAAAATGACCTTGCGGGCACTGAGCCGATCGGAGAGGCATAATGCACAAGCCGGGGA-TC
65 ACCCACAAAATGACCGTGCGGGCACTCAGCCGATCGGAGAGGCATAATGCACAAGCCGGGGACT-
** *
14119967 AACCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTACCAGTCCAGCTACCACAACCCTCGGTCCG
129 AACCCGGTCCCCCTCTGCGTGCTACCGATCCCACTACCAGTCCAGCTACCACAACCCTCGGTCCG
** * * * *
14120032 GTTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAACCCAACCTACAAAATGAGCGTGCAG-G
194 ACTAGGGCTTAGACATGGAATGAACTCCGTATGCCCAACCCAACCCACAAAATGAGCGTG-AGAG
* * *
14120096 CGCTCAGCCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCT
258 CGCTCAGCCGACCAGAGAGGCAGGATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGTGTGCT
14120161 ACCGATC
323 ACCGATC
14120168 TCACTGTAGG
Statistics
Matches: 293, Mismatches: 33, Indels: 9
0.87 0.10 0.03
Matches are distributed among these distances:
365 11 0.04
366 3 0.01
367 3 0.01
368 275 0.94
369 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.20
Consensus pattern (365 bp):
GATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACAAAATGACCGTGCGGGCACTCAGCCGATCGGAGAGGCATAATGCACAAGCCGGGGACTAA
CCCGGTCCCCCTCTGCGTGCTACCGATCCCACTACCAGTCCAGCTACCACAACCCTCGGTCCGAC
TAGGGCTTAGACATGGAATGAACTCCGTATGCCCAACCCAACCCACAAAATGAGCGTGAGAGCGC
TCAGCCGACCAGAGAGGCAGGATGCGCAAGCCAGGGATCGGCCCGATCCCCCTCTGTGTGCTACC
GATCCCGCTGTCGGTCTGATCTTAGACTGGGAATGAATCT
Found at i:14120152 original size:171 final size:171
Alignment explanation
Indices: 14119867--14121859 Score: 1045
Period size: 171 Copynumber: 11.6 Consensus size: 171
14119857 AACTCTATAT
* * * * * * *
14119867 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGACCTTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* ** * ** *
14119931 GCCGATCGGAGAGGCATAATGCACAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGAT
65 GCCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGAT
* *
14119996 CCCGCTACCAGTCCAGCTACCACAACCCTCGGTCCGGTTGGG
130 CCCACTGCCAGTCCAGCTACCACAACCCTCGGTCCGGTTGGG
* * * *
14120038 GCTTAGACATGGAATGAACTCTGTATGCCTAACCCAACCTACAAAATGAGCGTGCAGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* *
14120103 CCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTACCGATC
66 CCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATC
* * * ** *
14120168 TCACTG-TAGGTCCAGCTGCCACAACCCTCAATCCGGCTGGG
131 CCACTGCCA-GTCCAGCTACCACAACCCTCGGTCCGGTTGGG
* * * *
14120209 GCATAGACATGGAATGAACTTTGTATGTCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14120274 CCGATCGGAGAGGTAGGATACGCAAGCCGAGGATCGGCCTGGTCCCCCTCTGCGTGCTGCTGTTG
66 CCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGC---CG
* * * * * * * **** **
14120339 ATCCCACTGCTGATTCGATCT--TA-GA--CTGGGAATGAACTTCGTAT
128 ATCCCACTGC-CAGTCCAGCTACCACAACCCTCGG--TCCGGTT-G-GG
* * ** * * * *
14120383 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGTGTTCA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* ** * * * * *
14120447 GCC-AGTCGGAGAGGCATAATGCACAAGTCGGGGATCTGCCCGGTCCCCTTCTGCGTGCTACCGA
65 GCCGA-CCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGA
* * * * ** *
14120511 TCCCACTGCCGGTCCTGCTGCCACAACCCTAGGTTTGATTGGG
129 TCCCACTGCCAGTCCAGCTACCACAACCCTCGGTCCGGTTGGG
* * * *
14120554 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACAAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
14120619 CTGACCGGAGTGGTAGGATGTGCAAGCCAGGGATCGACCCAGTCCCCCTCTGCGTGCTACTGCTG
66 CCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTG---CTGCCG
* * * * * * **** **
14120684 ATCCCGCTGTCGGTCCA-AT-CTTA-AA--CTAGGAATGAACTCTGTAT
128 ATCCCACTGCCAGTCCAGCTAC-CACAACCCTCGG--TCCGGT-TG-GG
* * * * * * *
14120728 GCTTAGAC-TGGGAATGAACTTTGTATGCCTAAGTCAACCCATAAAATGAACGTGTGGGCGCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* ** * * *
14120792 GCCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGTACCCCTCTGCGTACTGCCGAT
65 GCCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGAT
* * * *
14120857 CCCACTGTCGGTCCAGCTACCACAACCCTCGGTCCGATTAGG
130 CCCACTGCCAGTCCAGCTACCACAACCCTCGGTCCGGTTGGG
* *
14120899 GCTTAGACATGGAATGAACTCTGTATACCTAACCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
*** * * * * * *
14120964 CCGATTAGAGAGGCAGGATGTGCAAGTCGGTGATCGGCCCGGTCCTCCTCTGTGTGCTACCGATC
66 CCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATC
* * *** *
14121029 TC-GTTATAGGTCCAGC-AGCCACAACCCTCGGTCCGGCTGGG
131 CCACTGCCA-GTCCAGCTA-CCACAACCCTCGGTCCGGTTGGG
* * * *
14121070 GCTTAGACATGGAACGAACT-TCGTATGCCTAAGCCAACCCACAAAACAAGCGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
** * * ** * *
14121134 ATCGACCGAAGAGGTAGGATGTACAAGCCGGGGATCGGCACGATCCCCCTCTGCGTGCTGCTGTC
65 GCCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGC---C
* * * * * * * **** **
14121199 GATCCCACTGTCGGTTC-GAT-CTTA-GA--CTGGGAATGAACTTCGTAT
127 GATCCCACTGCCAGTCCAGCTAC-CACAACCCTCGG--TCCGGTT-G-GG
* * * ** ** *
14121244 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAGCCCATGAAACGAGCGTATGGGTGCTCA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
* ** ** * * * * * * * *
14121308 GTCGGTC-GAGAGGCATAATGCACAAGCCGGGGTTCTGTCCGATCCCCCTCTACGTACTACCGAT
65 GCCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * * *
14121372 CCCGCTGTC-GATCCTGCTACCATAACCTTAGGTCTGGTTGGG
130 CCCACTGCCAG-TCCAGCTACCACAACCCTCGGTCCGGTTGGG
** ** * *
14121414 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCA-AAGAAAAAATGTGTGGGTGCTCA
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAA-AACGAGCGTGCGGGCGCTCA
* * * * * ** * * * *
14121478 GCTGACCAGAGTGGTAGGATGAGCAAGCTAGGAATCGGCTCAGTCCCCCTCTACGTGCTGCTGTC
65 GCCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGC---C
* ** * * * ****
14121543 GATCCCGCTGTTAGTCTGATCTTA-GACTGGGAATGAAC--TCC-GTAT---
127 GATCCCACTGCCAGTC-CAGC-TACCAC----AACCCTCGGTCCGGT-TGGG
* * * * * * *
14121588 GCTTAGAC-TGGGAATGAACTCTATATGCCTAAGTCAACCTACAAAACGAGTGTACGGGCTCTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
** ** * ** * * * * *
14121652 GCCGACCAAAGAGGCATAATACATAAGTCGGGGATCGACCCGATCCCTCTCTGCGTGCTGTCGAT
65 GCCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGAT
** * * * * ***
14121717 CCCGTTGCCGGTCCAGCTGCCACAACCCTTGGTTCACCTGGG
130 CCCACTGCCAGTCCAGCTACCACAACCCTCGGTCCGGTTGGG
* * * * * *
14121759 GCTTAGACATGGAATGAACTCTGTATGCCTAAGTCAATCCACGAAATGAGCAG-GTGGGCACT-A
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGC-GTGCGGGCGCTCA
* ** *
14121822 TGCCGGCCAAAGAGGCAGGATGCGCAAGCCGTGGATCG
65 -GCCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCG
14121860 ATCGGATAGT
Statistics
Matches: 1368, Mismatches: 372, Indels: 164
0.72 0.20 0.09
Matches are distributed among these distances:
166 2 0.00
168 3 0.00
169 3 0.00
170 92 0.07
171 748 0.55
172 28 0.02
173 64 0.05
174 399 0.29
175 19 0.01
176 5 0.00
177 3 0.00
179 2 0.00
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.21
Consensus pattern (171 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCCGATC
CCACTGCCAGTCCAGCTACCACAACCCTCGGTCCGGTTGGG
Found at i:14120387 original size:26 final size:26
Alignment explanation
Indices: 14120358--14120410 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14120348 CTGATTCGAT
*
14120358 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14120384 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14120410 C
1 C
14120411 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14120507 original size:345 final size:344
Alignment explanation
Indices: 14120038--14121023 Score: 1187
Period size: 345 Copynumber: 2.9 Consensus size: 344
14120028 TCCGGTTGGG
* ** * * * * **
14120038 GCTTAGACAT-GGAATGAACTCTGTATGCCTAACCCAACCTACAAAATGAGCGTGCAGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATCAACGTGTGGGCGCTCA
** *
14120102 GCC-GACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTACCGA
65 GCCAG-CCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCTCTGCGTGCTACCGA
* * * ** * *
14120166 TCTCACTGTAGGTCCAGCTGCCACAACCCTCAATCCGGCTGGGGCATAGACATGGAATGAACTTT
128 TCCCACTGTCGGTCCAGCTGCCACAACCCTCAGTCCGATTGGGGCTTAGACATGGAATGAACTCT
* **
14120231 GTATGTCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGTAGGATACG
193 GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGTAGGATGTG
* * * * *
14120296 CAAGCCGAGGATCGGCCTGGTCCCCCTCTGCGTGCTGCTGTTGATCCCACTG-CTGATTCGATCT
258 CAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACTGCTGATCCCACTGTC-GATCCAATCT
* *
14120360 TAGACTGGGAATGAACT-TCGTAT
322 TAAACTAGGAATGAACTCT-GTAT
* * *
14120383 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA-CAAGCGTGTGGGTGTTCA
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATCAA-CGTGTGGGCGCTCA
* * * *
14120447 GCCAGTCGGAGAGGCATAATGCACAAGTCGGGGATCTGCCCGGTCCCCTTCTGCGTGCTACCGAT
65 GCCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCC-TCTGCGTGCTACCGAT
* * **
14120512 CCCACTGCCGGTCCTGCTGCCACAACCCT-AGGTTTGATTGGGGCTTAGACATGGAATGAACTCT
129 CCCACTGTCGGTCCAGCTGCCACAACCCTCA-GTCCGATTGGGGCTTAGACATGGAATGAACTCT
* * * * * *
14120576 GTATGCCTAAGCCAACCCATAAAACAAGCGTGTGGGTGCTCAGCTGACCGGAGTGGTAGGATGTG
193 GTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGTAGGATGTG
* * * *
14120641 CAAGCC-AGGGATCGACCCAGTCCCCCTCTGCGTGCTACTGCTGATCCCGCTGTCGGTCCAATCT
258 CAAGCCGA-GGATCGGCCCGGTCCCCCTCTGCGTGCTACTGCTGATCCCACTGTCGATCCAATCT
14120705 TAAACTAGGAATGAACTCTGTAT
322 TAAACTAGGAATGAACTCTGTAT
** * *
14120728 GCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCATAAAATGAACGTGTGGGCGCTGAG
1 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATCAACGTGTGGGCGCTCAG
* * * *
14120793 CCGGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCAGTACCCCTCTGCGTACTGCCGATC
66 CCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGT-CCCCTCTGCGTGCTACCGATC
* * *
14120858 CCACTGTCGGTCCAGCTACCACAACCCTCGGTCCGATTAGGGCTTAGACATGGAATGAACTCTGT
130 CCACTGTCGGTCCAGCTGCCACAACCCTCAGTCCGATTGGGGCTTAGACATGGAATGAACTCTGT
* * * ** *
14120923 ATACCTAACCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGATTAGAGAGGCAGGATGTGCA
195 ATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGTAGGATGTGCA
* * *
14120988 AGTCG-GTGATCGGCCCGGTCCTCCTCTGTGTGCTAC
260 AGCCGAG-GATCGGCCCGGTCCCCCTCTGCGTGCTAC
14121024 CGATCTCGTT
Statistics
Matches: 539, Mismatches: 89, Indels: 26
0.82 0.14 0.04
Matches are distributed among these distances:
344 9 0.02
345 521 0.97
346 9 0.02
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (344 bp):
GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAATCAACGTGTGGGCGCTCAG
CCAGCCGGAGAGGCATAATGCGCAAGCCGGGGATCGGCCCGGTCCCCTCTGCGTGCTACCGATCC
CACTGTCGGTCCAGCTGCCACAACCCTCAGTCCGATTGGGGCTTAGACATGGAATGAACTCTGTA
TGCCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAGGTAGGATGTGCAA
GCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCTACTGCTGATCCCACTGTCGATCCAATCTTAAA
CTAGGAATGAACTCTGTAT
Found at i:14120741 original size:26 final size:26
Alignment explanation
Indices: 14120703--14120755 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14120693 TCGGTCCAAT
14120703 CTTAAACTAGGAATGAACTCTGTATG
1 CTTAAACTAGGAATGAACTCTGTATG
* * *
14120729 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAAACTAGGAATGAACTCTGTATG
14120755 C
1 C
14120756 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.15, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCTGTATG
Found at i:14120860 original size:516 final size:511
Alignment explanation
Indices: 14119839--14121381 Score: 1515
Period size: 516 Copynumber: 3.0 Consensus size: 511
14119829 GAATGAATCT
*
14119839 GATCTTAGACTGGGAATGAAC-TCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
1 GATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * *
14119903 ACCCACAAAATGACCTTGCGGGCACTGAGCCGATCGGAGAGGCATAATGCACAAGCCGGGGATCA
65 ACCCACAAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCATAATGCACAAGTCGGGGATCA
* ** * *
14119968 ACCCGGTCCCCCTCTGCGTGCTGTCGATCCCGCTACCAGTCCAGCTACCACAACCCTCGGTCCGG
130 GCCCGGT-CCCCTCTGCGTGCTACCGATCCCGCTACCGGTCCAGCTGCCACAACCCTCGGTCCGG
* * ** ** *
14120033 TTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAACCCAACCTACAAAATGAGCGTGCAGGCG
194 TTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCGTGTGGGTG
* * * *
14120098 CTCAGCCGACCGGAGAGGCAGGATGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTAC
259 CTCAGCTGACCGGAGAGGTAGGATGTGCAAGCCGGGGATCGGCCC-GTCCCCCTCTGCGTGCTAC
* * * * **** * * ** *
14120163 --C-GATCTCACTGTAGGTCCAGCTGCCACAACCCTCAAT--CCGGCTG-GGGCATAGACAT-GG
323 TGCTGATCCCACTGTCGGTCCATCT--TA-AACTAGGAATGAAC-TCTGTATGCTTAGAC-TGGG
* * * * *
14120221 AATGAACTTTGTATGTCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAGCCGATCGGAGAG
383 AATGAACTTTGTATGCCTAAGTCAACCCATAAAACGAGCGTGTGGGTGCTCAGCCGGTCGGAGAG
* ** * * * * *
14120286 GTAGGATACGCAAGCCGAGGATCGGCCTGGTCCCCCTCTGCGTGCTGCTGTTGATCCCACTG-CT
448 GCATAATGCGCAAGCCGGGGATCGGCC-CGTCCCCCTCTGCGTACTGC---CGATCCCACTGTC-
*
14120350 GATTC
508 G-GTC
14120355 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * * * * *
14120420 CCCATGAAACAAGCGTGTGGGTGTTCAGCC-AGTCGGAGAGGCATAATGCACAAGTCGGGGATCT
66 CCCACAAAACGAGCGTGCGGGCGCTCAGCCGA-TCGGAGAGGCATAATGCACAAGTCGGGGATCA
* * * * ** *
14120484 GCCCGGTCCCCTTCTGCGTGCTACCGATCCCACTGCCGGTCCTGCTGCCACAACCCTAGGTTTGA
130 GCCCGGTCCCC-TCTGCGTGCTACCGATCCCGCTACCGGTCCAGCTGCCACAACCCTCGGTCCGG
*
14120549 TTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACAAGCGTGTGGGTG
194 TTGGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCGTGTGGGTG
* * *
14120614 CTCAGCTGACCGGAGTGGTAGGATGTGCAAGCCAGGGATCGACCCAGTCCCCCTCTGCGTGCTAC
259 CTCAGCTGACCGGAGAGGTAGGATGTGCAAGCCGGGGATCGGCCC-GTCCCCCTCTGCGTGCTAC
*
14120679 TGCTGATCCCGCTGTCGGTCCAATCTTAAACTAGGAATGAACTCTGTATGCTTAGACTGGGAATG
323 TGCTGATCCCACTGTCGGTCC-ATCTTAAACTAGGAATGAACTCTGTATGCTTAGACTGGGAATG
* * * * *
14120744 AACTTTGTATGCCTAAGTCAACCCATAAAATGAACGTGTGGGCGCTGAGCCGGCCGGAGAGGCAT
387 AACTTTGTATGCCTAAGTCAACCCATAAAACGAGCGTGTGGGTGCTCAGCCGGTCGGAGAGGCAT
*
14120809 AATGCGCAAGCCGGGGATCGGCCCAGTACCCCTCTGCGTACTGCCGATCCCACTGTCGGTC
452 AATGCGCAAGCCGGGGATCGGCCC-GTCCCCCTCTGCGTACTGCCGATCCCACTGTCGGTC
* * * * * *** * * * *
14120870 CAGCTACCACAACCCTCGGTCCG-A-TTAG--GGCTTAGACAT-GGAATGAACTCTGTATACCTA
1 GATCT--TA-GA--CTGGGAATGAACTTCGTATGCTTAGAC-TGGGAATGAACTCCGTATGCCTA
** ** ** ** *
14120930 ACCCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGATTAGAGAGGCAGGATGTGCAAGTCGGT
60 AGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCATAATGCACAAGTCGGG
* * * * ** *
14120995 GATCGGCCCGGTCCTCCTCTGTGTGCTACCGATCTCGTTATAGGTCCAGCAGCCACAACCCTCGG
125 GATCAGCCCGGTCC-CCTCTGCGTGCTACCGATCCCGCTACCGGTCCAGCTGCCACAACCCTCGG
* *
14121060 TCCGGCTGGGGCTTAGACATGGAACGAACT-TCGTATGCCTAAGCCAACCCACAAAACAAGCGTG
189 TCCGGTTGGGGCTTAGACATGGAATGAACTCT-GTATGCCTAAGCCAACCCACAAAACAAGCGTG
* * * *
14121124 TGGGTGCTCA-ATCGACCGAAGAGGTAGGATGTACAAGCCGGGGATCGGCACGATCCCCCTCTGC
253 TGGGTGCTCAGCT-GACCGGAGAGGTAGGATGTGCAAGCCGGGGATCGGCCCG-TCCCCCTCTGC
* * * *
14121188 GTGCTGCTG-TCGATCCCACTGTCGGTTCGATCTTAGACTGGGAATGAACT-TCGTATGCTTAGA
316 GTGCTACTGCT-GATCCCACTGTCGG-TCCATCTTAAACTAGGAATGAACTCT-GTATGCTTAGA
** * * * *
14121251 CTGGGAATGAACTCCGTATGCCTAAGTCAGCCCATGAAACGAGCGTATGGGTGCTCAGTCGGTC-
378 CTGGGAATGAACTTTGTATGCCTAAGTCAACCCATAAAACGAGCGTGTGGGTGCTCAGCCGGTCG
* * * * * * *
14121315 GAGAGGCATAATGCACAAGCCGGGGTTCTGTCCGATCCCCCTCTACGTACTACCGATCCCGCTGT
443 GAGAGGCATAATGCGCAAGCCGGGGATCGGCCCG-TCCCCCTCTGCGTACTGCCGATCCCACTGT
14121380 CG
507 CG
14121382 ATCCTGCTAC
Statistics
Matches: 848, Mismatches: 151, Indels: 57
0.80 0.14 0.05
Matches are distributed among these distances:
514 1 0.00
515 72 0.08
516 622 0.73
517 16 0.02
518 10 0.01
519 119 0.14
520 8 0.01
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (511 bp):
GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCACAAAACGAGCGTGCGGGCGCTCAGCCGATCGGAGAGGCATAATGCACAAGTCGGGGATCAG
CCCGGTCCCCTCTGCGTGCTACCGATCCCGCTACCGGTCCAGCTGCCACAACCCTCGGTCCGGTT
GGGGCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACAAGCGTGTGGGTGCT
CAGCTGACCGGAGAGGTAGGATGTGCAAGCCGGGGATCGGCCCGTCCCCCTCTGCGTGCTACTGC
TGATCCCACTGTCGGTCCATCTTAAACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACT
TTGTATGCCTAAGTCAACCCATAAAACGAGCGTGTGGGTGCTCAGCCGGTCGGAGAGGCATAATG
CGCAAGCCGGGGATCGGCCCGTCCCCCTCTGCGTACTGCCGATCCCACTGTCGGTC
Found at i:14121204 original size:345 final size:339
Alignment explanation
Indices: 14119867--14121213 Score: 1106
Period size: 345 Copynumber: 3.9 Consensus size: 339
14119857 AACTCTATAT
* * * * * * *
14119867 GCTTAGAC-TGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGACCTTGCGGGCACTGA
1 GCTTAGACAT-GGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCA
** * * **
14119931 GCCGATCGGAGAGGCATAATGCACAAGCCGGGGATCAACCCGGTCCCCCTCTGCGTGCTGTCGAT
65 GCCGATCGGAGAGGCAGGATGCGCAAGCC-GGGATCGACCCGGTCCCCCTCTGCGTGCTACCGAT
* * * * *
14119996 CCCGCTACCA-GTCCAGCTAC-CACAACCCTCGGTCCGGTTG-GGGCTTAGACAT-GGAATGAAC
129 CCCGCTA-TAGGTCCAGAT-CTCA-AA--CTCGGTACGGCTGTAGGCTTAGAC-TGGGAATGAAC
* * ** ** * *
14120057 -TCTGTATGCCTAACCCAACCTACAAAATGAGCGTGCAGGCGCTCAGCCGACCGGAGAGGCAGGA
188 TTC-GTATGCCTAAGCCAACCCACAAAACAAGCGTGTGGGCGCTCAACCGACCGGAGAGGCAGAA
* * * * * *
14120121 TGCGCAAGCCGGGGATCGGCCCGGTCCCCCTCTGTGTGCTACCGATCTCACTGTAGGTCCAGCTG
252 TGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTGTCGGTCCAGCTG
** **
14120186 CCACAACCCTCAATCCGGCTGGG
317 CCACAACCCTCGGTCCGATTGGG
* * * *
14120209 GCATAGACATGGAATGAACTTTGTATGTCTAAGCCAACCCACAAAACGAGCGTGCGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14120274 CCGATCGGAGAGGTAGGATACGCAAGCCGAGGATCGGCCTGGTCCCCCTCTGCGTGCTGCTGTTG
66 CCGATCGGAGAGGCAGGATGCGCAAGCCG-GGATCGACCCGGTCCCCCTCTGCGTGCTAC---CG
* * * * * * * * * * *
14120339 ATCCCACTGCT-GATTC-GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAAC
127 ATCCCGCT-ATAGGTCCAGATCTCAAACTCGGTACG-GC-T-GTAGGCTTAGACTGGGAATGAAC
* * ** * * * * *
14120402 TCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGTGGGTGTTCAGCC-AGTCGGAGAGGCATAA
188 TTCGTATGCCTAAGCCAACCCACAAAACAAGCGTGTGGGCGCTCAACCGA-CCGGAGAGGCAGAA
* * * * * * *
14120466 TGCACAAGTCGGGGATCTGCCCGGTCCCCTTCTGCGTGCTACCGATCCCACTGCCGGTCCTGCTG
252 TGCACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTGTCGGTCCAGCTG
* **
14120531 CCACAACCCTAGGTTTGATTGGG
317 CCACAACCCTCGGTCCGATTGGG
* * * *
14120554 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCATAAAACAAGCGTGTGGGTGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
* * * * * *
14120619 CTGACCGGAGTGGTAGGATGTGCAAGCCAGGGATCGACCCAGTCCCCCTCTGCGTGCTACTGCTG
66 CCGATCGGAGAGGCAGGATGCGCAAGCC-GGGATCGACCCGGTCCCCCTCTGCGTGCTAC--C-G
* * * * * *
14120684 ATCCCGCTGTCGGTCCA-ATCTTAAACTAGGAATGAAC-TCTGTATGCTTAGACTGGGAATGAAC
127 ATCCCGCTATAGGTCCAGATCTCAAACTCGG--T--ACGGCTGTAGGCTTAGACTGGGAATGAAC
* * * * * * * *
14120747 TTTGTATGCCTAAGTCAACCCATAAAATGAA-CGTGTGGGCGCTGAGCCGGCCGGAGAGGCATAA
188 TTCGTATGCCTAAGCCAACCCACAAAA-CAAGCGTGTGGGCGCTCAACCGACCGGAGAGGCAGAA
* * *
14120811 TGCGCAAGCCGGGGATCGGCCC-AGTACCCCTCTGCGTACTGCCGATCCCACTGTCGGTCCAGCT
252 TGCACAAGCCGGGGATCGGCCCGA-TCCCCCTCTGCGTGCTGCCGATCCCACTGTCGGTCCAGCT
* *
14120875 ACCACAACCCTCGGTCCGATTAGG
316 GCCACAACCCTCGGTCCGATTGGG
* *
14120899 GCTTAGACATGGAATGAACTCTGTATACCTAACCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
1 GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
** * * * * *
14120964 CCGATTAGAGAGGCAGGATGTGCAAGTCGGTGATCGGCCCGGTCCTCCTCTGTGTGCTACCGATC
66 CCGATCGGAGAGGCAGGATGCGCAAGCCGG-GATCGACCCGGTCCCCCTCTGCGTGCTACCGATC
* * * * * *
14121029 TCGTTATAGGTCCAGCAGC-CACAACCCTCGGTCCGGCTG-GGGCTTAGACAT-GGAACGAACTT
130 CCGCTATAGGTCCAG-ATCTCA-AA--CTCGGTACGGCTGTAGGCTTAGAC-TGGGAATGAACTT
* * * * * *
14121091 CGTATGCCTAAGCCAACCCACAAAACAAGCGTGTGGGTGCTCAATCGACCGAAGAGGTAGGATGT
190 CGTATGCCTAAGCCAACCCACAAAACAAGCGTGTGGGCGCTCAACCGACCGGAGAGGCAGAATGC
*
14121156 ACAAGCCGGGGATCGGCACGATCCCCCTCTGCGTGCTGCTGTCGATCCCACTGTCGGT
255 ACAAGCCGGGGATCGGCCCGATCCCCCTCTGCGTGCTGC---CGATCCCACTGTCGGT
14121214 TCGATCTTAG
Statistics
Matches: 800, Mismatches: 166, Indels: 75
0.77 0.16 0.07
Matches are distributed among these distances:
341 8 0.01
342 215 0.27
343 11 0.01
344 14 0.02
345 541 0.68
346 9 0.01
347 1 0.00
349 1 0.00
ACGTcount: A:0.23, C:0.29, G:0.28, T:0.20
Consensus pattern (339 bp):
GCTTAGACATGGAATGAACTCTGTATGCCTAAGCCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGATCGGAGAGGCAGGATGCGCAAGCCGGGATCGACCCGGTCCCCCTCTGCGTGCTACCGATCC
CGCTATAGGTCCAGATCTCAAACTCGGTACGGCTGTAGGCTTAGACTGGGAATGAACTTCGTATG
CCTAAGCCAACCCACAAAACAAGCGTGTGGGCGCTCAACCGACCGGAGAGGCAGAATGCACAAGC
CGGGGATCGGCCCGATCCCCCTCTGCGTGCTGCCGATCCCACTGTCGGTCCAGCTGCCACAACCC
TCGGTCCGATTGGG
Found at i:14121248 original size:26 final size:26
Alignment explanation
Indices: 14121219--14121271 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14121209 TCGGTTCGAT
*
14121219 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14121245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14121271 C
1 C
14121272 CTAAGTCAGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14121614 original size:26 final size:26
Alignment explanation
Indices: 14121563--14121615 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14121553 TTAGTCTGAT
*
14121563 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14121589 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
14121615 C
1 C
14121616 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14121637 original size:344 final size:345
Alignment explanation
Indices: 14120899--14121800 Score: 851
Period size: 344 Copynumber: 2.6 Consensus size: 345
14120889 TCCGATTAGG
** * ** * *
14120899 GCTTAGACAT-GGAATGAACTCTGTATACCTAACCCAACCCACAAAACGAGCGTGCGGGCGCTCA
1 GCTTAGAC-TGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCTCTCA
** * ** *** * * * * * ** *
14120963 GCCGATTAGAGAGGCAGGATGTGCAAGTCGGTGATCGGCCCGGTCCTCCTCTGTGTGCTACCGAT
65 GCCGACCAAAGAGGCATAATACACAAGCCGGGGATCGACCCGATCCCCCTCTACGTACTACCGAT
* * *** * * * ** *
14121028 CTCGTTATAGGTCCAGC-AGCCACAACCCTCGGTCCGGCTGGGGCTTAGACATGGAACGAACT-T
130 CCCGCTGCCGATCCAGCTA-CCACAACCCTTGGTTCACCTGGGGCTTAGACATGGAATGAACTCT
* *
14121091 CGTATGCCTAAGCCAACCCACAAAACAAGCGTGTGGGTGCTCAATCGACCGAAGAGGTAGGATGT
194 -GTATGCCTAAGCCAACCCACAAAAAAAACGTGTGGGTGCTCAATCGACCGAAGAGGTAGGATGT
* * * *
14121156 ACAAGCCGGGGATCGGCACGATCCCCCTCTGCGTGCTGCTGTCGATCCCACTGTCGGTTCGATCT
258 ACAAGCCAGGAATCGGCACGATCCCCCTCTACGTGCTGCTGTCGATCCCACTGTCAGTTCGATCT
*
14121221 TAGACTGGGAATGAACTTCGTAT
323 TAGACTGGGAATGAACTCCGTAT
* * ** *
14121244 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAGCCCATGAAACGAGCGTATGGG-TGCTCA
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCT-CTCA
* ** * * * *
14121308 GTCGGTC-GAGAGGCATAATGCACAAGCCGGGGTTCTG-TCCGATCCCCCTCTACGTACTACCGA
65 GCCGACCAAAGAGGCATAATACACAAGCCGGGGATC-GACCCGATCCCCCTCTACGTACTACCGA
* * * ***
14121371 TCCCGCTGTCGATCCTGCTACCATAA-CCTTAGG-TCTGGTTGGGGCTTAGACATGGAATGAACT
129 TCCCGCTGCCGATCCAGCTACCACAACCCTT-GGTTC-ACCTGGGGCTTAGACATGGAATGAACT
* * *
14121434 CTGTATGCCTAAGCCAACCCA-AAGAAAAAATGTGTGGGTGCTC-AGCTGACC-AGAGTGGTAGG
192 CTGTATGCCTAAGCCAACCCACAA-AAAAAACGTGTGGGTGCTCAATC-GACCGA-AGAGGTAGG
* * * *
14121496 ATG-AGCAAGCTAGGAATCGGCTC-AGTCCCCCTCTACGTGCTGCTGTCGATCCCGCTGTTAG-T
254 ATGTA-CAAGCCAGGAATCGGCACGA-TCCCCCTCTACGTGCTGCTGTCGATCCCACTGTCAGTT
14121558 CTGATCTTAGACTGGGAATGAACTCCGTAT
317 C-GATCTTAGACTGGGAATGAACTCCGTAT
* * * *
14121588 GCTTAGACTGGGAATGAACTCTATATGCCTAAGTCAACCTACAAAACGAGTGTACGGGCTCTGAG
1 GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCTCTCAG
* * * * * **
14121653 CCGACCAAAGAGGCATAATACATAAGTCGGGGATCGACCCGATCCCTCTCTGCGTGCTGTCGATC
66 CCGACCAAAGAGGCATAATACACAAGCCGGGGATCGACCCGATCCCCCTCTACGTACTACCGATC
* * *
14121718 CCGTTGCCGGTCCAGCTGCCACAACCCTTGGTTCACCTGGGGCTTAGACATGGAATGAACTCTGT
131 CCGCTGCCGATCCAGCTACCACAACCCTTGGTTCACCTGGGGCTTAGACATGGAATGAACTCTGT
* *
14121783 ATGCCTAAGTCAATCCAC
196 ATGCCTAAGCCAACCCAC
14121801 GAAATGAGCA
Statistics
Matches: 453, Mismatches: 85, Indels: 37
0.79 0.15 0.06
Matches are distributed among these distances:
343 13 0.03
344 267 0.59
345 167 0.37
346 6 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (345 bp):
GCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCTCTCAG
CCGACCAAAGAGGCATAATACACAAGCCGGGGATCGACCCGATCCCCCTCTACGTACTACCGATC
CCGCTGCCGATCCAGCTACCACAACCCTTGGTTCACCTGGGGCTTAGACATGGAATGAACTCTGT
ATGCCTAAGCCAACCCACAAAAAAAACGTGTGGGTGCTCAATCGACCGAAGAGGTAGGATGTACA
AGCCAGGAATCGGCACGATCCCCCTCTACGTGCTGCTGTCGATCCCACTGTCAGTTCGATCTTAG
ACTGGGAATGAACTCCGTAT
Found at i:14122509 original size:13 final size:13
Alignment explanation
Indices: 14122491--14122515 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14122481 CAATGACACA
14122491 TGATGGCACATGG
1 TGATGGCACATGG
14122504 TGATGGCACATG
1 TGATGGCACATG
14122516 CATCGACCAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.24, C:0.16, G:0.36, T:0.24
Consensus pattern (13 bp):
TGATGGCACATGG
Found at i:14122594 original size:45 final size:45
Alignment explanation
Indices: 14122545--14122639 Score: 104
Period size: 45 Copynumber: 2.1 Consensus size: 45
14122535 AGGCTGCCCT
*
14122545 TTGGTAC-AGGCACTTACCTCGACCGCCAT-AGGCACAAGCTGGGCC
1 TTGGTACGA-GCACTTACCTCGACCACCATCA-GCACAAGCTGGGCC
** * * *
14122590 TTGGTACGAGCGGTTGCCTCGATCACCATCAGCACACGCTGGGCC
1 TTGGTACGAGCACTTACCTCGACCACCATCAGCACAAGCTGGGCC
14122635 TTGGT
1 TTGGT
14122640 GCGGGCGGTT
Statistics
Matches: 42, Mismatches: 6, Indels: 4
0.81 0.12 0.08
Matches are distributed among these distances:
45 40 0.95
46 2 0.05
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.21
Consensus pattern (45 bp):
TTGGTACGAGCACTTACCTCGACCACCATCAGCACAAGCTGGGCC
Found at i:14122648 original size:45 final size:45
Alignment explanation
Indices: 14122576--14122676 Score: 121
Period size: 45 Copynumber: 2.2 Consensus size: 45
14122566 ACCGCCATAG
* * * *
14122576 GCACAAGCTGGGCCTTGGTACGAGCGGTTGCCTCGATCACCATCA
1 GCACACGCTGGGCCTTGGTACGAGCGGTTGCCCCAAACACCATCA
* * * **
14122621 GCACACGCTGGGCCTTGGTGCGGGCGGTTTCCCCAAACACCATTG
1 GCACACGCTGGGCCTTGGTACGAGCGGTTGCCCCAAACACCATCA
14122666 GCACACGCTGG
1 GCACACGCTGG
14122677 TCGATCACTA
Statistics
Matches: 47, Mismatches: 9, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.18, C:0.33, G:0.31, T:0.19
Consensus pattern (45 bp):
GCACACGCTGGGCCTTGGTACGAGCGGTTGCCCCAAACACCATCA
Found at i:14122919 original size:24 final size:24
Alignment explanation
Indices: 14122887--14122982 Score: 165
Period size: 24 Copynumber: 4.0 Consensus size: 24
14122877 GGCGGTTGCC
* *
14122887 TCGAGCACCATCGGCACACACTGG
1 TCGATCACCATCGGCACACGCTGG
14122911 TCGATCACCATCGGCACACGCTGG
1 TCGATCACCATCGGCACACGCTGG
14122935 TCGATCACCATCGGCACACGCTGG
1 TCGATCACCATCGGCACACGCTGG
*
14122959 TCGATCACCATCGGCACATGCTGG
1 TCGATCACCATCGGCACACGCTGG
14122983 GCCTTGGTGA
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 69 1.00
ACGTcount: A:0.22, C:0.36, G:0.25, T:0.17
Consensus pattern (24 bp):
TCGATCACCATCGGCACACGCTGG
Found at i:14123024 original size:45 final size:45
Alignment explanation
Indices: 14122959--14123142 Score: 214
Period size: 45 Copynumber: 4.1 Consensus size: 45
14122949 CACACGCTGG
* *
14122959 TCGATCACCATCGGCACATGCTGGGCCTTGGTGAAGGTGGTTGCC
1 TCGATCACCATCGGCACATGCTGGGCCCTGGTGACGGTGGTTGCC
* *
14123004 TCGAGCACCATCGGTACATGCTGGGCCCTGGT-ACGG-GCAGTTGCC
1 TCGATCACCATCGGCACATGCTGGGCCCTGGTGACGGTG--GTTGCC
* * * *
14123049 TCGATCACCATCGGCACACGTTGGGCCCTAGTG-CGAGCGGTTGCC
1 TCGATCACCATCGGCACATGCTGGGCCCTGGTGACG-GTGGTTGCC
* *
14123094 TCGATCACCATCGGCACATGTTGGGCCTTGGTG-CGGGTGGTTGCC
1 TCGATCACCATCGGCACATGCTGGGCCCTGGTGAC-GGTGGTTGCC
14123139 TCGA
1 TCGA
14123143 GCCCTGGTGT
Statistics
Matches: 120, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 113 0.94
46 2 0.02
47 1 0.01
ACGTcount: A:0.15, C:0.29, G:0.33, T:0.23
Consensus pattern (45 bp):
TCGATCACCATCGGCACATGCTGGGCCCTGGTGACGGTGGTTGCC
Found at i:14123156 original size:25 final size:25
Alignment explanation
Indices: 14123122--14123169 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
14123112 TGTTGGGCCT
*
14123122 TGGTGCGGGTGGTTGCCTCGAGCCC
1 TGGTGCGGGTGATTGCCTCGAGCCC
*
14123147 TGGTGTGGGTGATTGCCTCGAGC
1 TGGTGCGGGTGATTGCCTCGAGC
14123170 ACCATCGGTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.06, C:0.23, G:0.44, T:0.27
Consensus pattern (25 bp):
TGGTGCGGGTGATTGCCTCGAGCCC
Found at i:14123177 original size:115 final size:115
Alignment explanation
Indices: 14123044--14123257 Score: 261
Period size: 115 Copynumber: 1.9 Consensus size: 115
14123034 GTACGGGCAG
* * * * * *
14123044 TTGCCTCGATCACCATCGGCACACGTTGGGCC-CTAGTGCGAGCGGTTGCCTCGATCACCATCGG
1 TTGCCTCGAGCACCATCGGCACAAGAT-GGCCTCTAGTGCGAGCGATTGACTCGAACACCATCGG
* * *
14123108 CACATGTTGGGC-CTTGGTGCGGGTGGTTGCCTCGAGCCCTGGTGTGGGTGA
65 CACACGTTGGGCTC-TAGTGCGGGCGGTTGCCTCGAGCCCTGGTGTGGGTGA
* * * * * *
14123159 TTGCCTCGAGCACCATCGGTAGAAGATGGCCTCTGGTGTGGGTGATTGACTCGAACACCATCGGC
1 TTGCCTCGAGCACCATCGGCACAAGATGGCCTCTAGTGCGAGCGATTGACTCGAACACCATCGGC
14123224 ACACGTTGGGCTCTAGTGCGGGCGGTTGCCTCGA
66 ACACGTTGGGCTCTAGTGCGGGCGGTTGCCTCGA
14123258 TCACCATCGG
Statistics
Matches: 82, Mismatches: 15, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
114 4 0.05
115 77 0.94
116 1 0.01
ACGTcount: A:0.14, C:0.28, G:0.34, T:0.24
Consensus pattern (115 bp):
TTGCCTCGAGCACCATCGGCACAAGATGGCCTCTAGTGCGAGCGATTGACTCGAACACCATCGGC
ACACGTTGGGCTCTAGTGCGGGCGGTTGCCTCGAGCCCTGGTGTGGGTGA
Found at i:14123257 original size:45 final size:45
Alignment explanation
Indices: 14123208--14123451 Score: 202
Period size: 45 Copynumber: 5.4 Consensus size: 45
14123198 GGGTGATTGA
* * * *
14123208 CTCGAACACCATCGGCACACGTTGGGCTCTAGTGCGGGCGGTTGC
1 CTCGAACACCATCGGCACAAGTTGGGCCCTGGTGCGGGCGGTTAC
* * * * * *
14123253 CTCGATCACCATCGGCACATGTTGAGCCCTAGTACGGGCAGTTAC
1 CTCGAACACCATCGGCACAAGTTGGGCCCTGGTGCGGGCGGTTAC
* * * * * **
14123298 CTTGACCACCATCGCCATAAG-TCGGCCCTTGGTGCGGGCCTTTAC
1 CTCGAACACCATCGGCACAAGTTGGGCCC-TGGTGCGGGCGGTTAC
* ** * * *
14123343 CTCGACCACCATCAACAGAAGATGGCCCCTGGTGCGGGCGGTTAC
1 CTCGAACACCATCGGCACAAGTTGGGCCCTGGTGCGGGCGGTTAC
* * * * *
14123388 GTCGAACACCATCGGCACACGCTGGGCCTTGGTGCGGGCGATTAC
1 CTCGAACACCATCGGCACAAGTTGGGCCCTGGTGCGGGCGGTTAC
* *
14123433 CTCGATCATCATCGGCACA
1 CTCGAACACCATCGGCACA
14123452 TGCTGGTCAA
Statistics
Matches: 158, Mismatches: 39, Indels: 4
0.79 0.19 0.02
Matches are distributed among these distances:
44 5 0.03
45 148 0.94
46 5 0.03
ACGTcount: A:0.19, C:0.33, G:0.28, T:0.20
Consensus pattern (45 bp):
CTCGAACACCATCGGCACAAGTTGGGCCCTGGTGCGGGCGGTTAC
Found at i:14123457 original size:45 final size:45
Alignment explanation
Indices: 14123147--14123457 Score: 173
Period size: 45 Copynumber: 6.9 Consensus size: 45
14123137 CCTCGAGCCC
* * * * * * *
14123147 TGGTGTGGGTGATTGCCTCGAGCACCATCGGTAGAAGAT-GGCCT
1 TGGTGCGGGCGATTACCTCGAACACCATCGGCACAAGCTGGGCCT
* * * *
14123191 CTGGTGTGGGTGATTGA-CTCGAACACCATCGGCACACGTTGGG-CT
1 -TGGTGCGGGCGATT-ACCTCGAACACCATCGGCACAAGCTGGGCCT
* * * * * * * *
14123236 CTAGTGCGGGCGGTTGCCTCGATCACCATCGGCACATGTTGAGCCC
1 -TGGTGCGGGCGATTACCTCGAACACCATCGGCACAAGCTGGGCCT
* * * * * * *
14123282 TAGTACGGGC-AGTTACCTTGACCACCATCGCCATAAG-TCGGCCCT
1 TGGTGCGGGCGA-TTACCTCGAACACCATCGGCACAAGCT-GGGCCT
** * ** * * * *
14123327 TGGTGCGGGCCTTTACCTCGACCACCATCAACAGAAGATGGCCCC
1 TGGTGCGGGCGATTACCTCGAACACCATCGGCACAAGCTGGGCCT
* * *
14123372 TGGTGCGGGCGGTTACGTCGAACACCATCGGCACACGCTGGGCCT
1 TGGTGCGGGCGATTACCTCGAACACCATCGGCACAAGCTGGGCCT
* * *
14123417 TGGTGCGGGCGATTACCTCGATCATCATCGGCACATGCTGG
1 TGGTGCGGGCGATTACCTCGAACACCATCGGCACAAGCTGG
14123458 TCAATCACCA
Statistics
Matches: 208, Mismatches: 50, Indels: 16
0.76 0.18 0.06
Matches are distributed among these distances:
44 1 0.00
45 203 0.98
46 4 0.02
ACGTcount: A:0.18, C:0.29, G:0.31, T:0.22
Consensus pattern (45 bp):
TGGTGCGGGCGATTACCTCGAACACCATCGGCACAAGCTGGGCCT
Found at i:14123505 original size:69 final size:69
Alignment explanation
Indices: 14123394--14123523 Score: 190
Period size: 69 Copynumber: 1.9 Consensus size: 69
14123384 TTACGTCGAA
* * * *
14123394 CACCATCGGCACACGCTGGGCCTTGGTGCGGGCGATTACCTCGATCATCATCGGCACATGCTGGT
1 CACCATCGACACACGCTGGGCCTTGGTGCAGACGATTACCTCGATCACCATCGGCACATGCTGGT
14123459 CAAT
66 CAAT
* *
14123463 CACCATCGACACACGCTGGG-CTCTGGTGCAGACGGTTGCCTCGATCACCATCGGCACATGC
1 CACCATCGACACACGCTGGGCCT-TGGTGCAGACGATTACCTCGATCACCATCGGCACATGC
14123524 GGGGCCTGGA
Statistics
Matches: 54, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
68 2 0.04
69 52 0.96
ACGTcount: A:0.19, C:0.34, G:0.27, T:0.20
Consensus pattern (69 bp):
CACCATCGACACACGCTGGGCCTTGGTGCAGACGATTACCTCGATCACCATCGGCACATGCTGGT
CAAT
Found at i:14123618 original size:89 final size:90
Alignment explanation
Indices: 14123485--14123649 Score: 208
Period size: 89 Copynumber: 1.8 Consensus size: 90
14123475 ACGCTGGGCT
* * * *
14123485 CTGGTGCAGACGGTTGCCTCGATCACCATCGGCACATGCGGGG-CCTGGAACGGGCAGTT-GCCT
1 CTGGTGCAGACAGTTGCCTCGAACACCATCAGCACACGCGGGGCCCTGGAACGGGC-GTTGGCCT
*
14123548 CGACCACCATCGATAGAAGATGGCCC
65 CGAACACCATCGATAGAAGATGGCCC
* ** * **
14123574 CTGGTGCAGGCAGTTGTGTCGAACACCATCAGCACACGCTGGGCCCTGGTGCGGGCGTTGGCCTC
1 CTGGTGCAGACAGTTGCCTCGAACACCATCAGCACACGCGGGGCCCTGGAACGGGCGTTGGCCTC
14123639 GAACACCATCG
66 GAACACCATCG
14123650 GCACGTGCTG
Statistics
Matches: 63, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
89 38 0.60
90 25 0.40
ACGTcount: A:0.19, C:0.32, G:0.32, T:0.18
Consensus pattern (90 bp):
CTGGTGCAGACAGTTGCCTCGAACACCATCAGCACACGCGGGGCCCTGGAACGGGCGTTGGCCTC
GAACACCATCGATAGAAGATGGCCC
Found at i:14123621 original size:45 final size:44
Alignment explanation
Indices: 14123463--14123719 Score: 139
Period size: 45 Copynumber: 5.8 Consensus size: 44
14123453 GCTGGTCAAT
* * * *
14123463 CACCATC-GACACACGCTGGGCTCTGGTGCAGACGGTTGCCTCGAT
1 CACCATCAG-CACACGCTGGGCCCTGGTGCAGGC-GTTGGCTCGAA
* * * ** * * *
14123508 CACCATCGGCACATGC-GGGGCCTGGAACGGGCAGTTGCCTCGAC
1 CACCATCAGCACACGCTGGGCCCTGGTGCAGGC-GTTGGCTCGAA
* * * * *
14123552 CACCATC-GATAGAAGATGGCCCCTGGTGCAGGCAGTTGTG-TCGAA
1 CACCATCAG-CACACGCTGGGCCCTGGTGCAGGC-GTTG-GCTCGAA
*
14123597 CACCATCAGCACACGCTGGGCCCTGGTGCGGGCGTTGGCCTCGAA
1 CACCATCAGCACACGCTGGGCCCTGGTGCAGGCGTTGG-CTCGAA
* ** * * *
14123642 CACCATCGGCACGTGCTGGGCCTTGGTGCGAGAG-GTTGCCTCGAG
1 CACCATCAGCACACGCTGGGCCCTGGTGC-AG-GCGTTGGCTCGAA
* * *
14123687 CACCATCGGCACAAGC-CGGCCCATGGTGCAGGC
1 CACCATCAGCACACGCTGGGCCC-TGGTGCAGGC
14123720 TCTTACCTTA
Statistics
Matches: 164, Mismatches: 37, Indels: 23
0.73 0.17 0.10
Matches are distributed among these distances:
43 3 0.02
44 40 0.24
45 113 0.69
46 7 0.04
47 1 0.01
ACGTcount: A:0.18, C:0.32, G:0.33, T:0.17
Consensus pattern (44 bp):
CACCATCAGCACACGCTGGGCCCTGGTGCAGGCGTTGGCTCGAA
Found at i:14123653 original size:248 final size:249
Alignment explanation
Indices: 14123214--14123699 Score: 591
Period size: 248 Copynumber: 2.0 Consensus size: 249
14123204 TTGACTCGAA
* * * * *
14123214 CACCATCGGCACACGTTGGGCTCTAGTGCGGGCGGTTGCCTCGATCACCATCGGCACATGTTGAG
1 CACCATCGACACACGCTGGGCTCTAGTGCAGACGGTTGCCTCGATCACCATCGGCACATGTCGAG
* * * * * * **
14123279 CCCTAGTACGGGCAGTTACCTTGACCACCATCGCCATAAGTCGGCCCTTGGTGCGGGCCTTTACC
66 CCCTAGAACGGGCAGTTACCTCGACCACCATCGACAGAAGTCGGCCCCTGGTGCAGGCAGTTACC
* * *
14123344 TCGACCACCATCAACAGAAGATGGCCCCTGGTGCGGGCGGTTACGTCGAACACCATCGGCACACG
131 TCGAACACCATCAACACAAGATGGCCCCTGGTGCGGGCGGTTACCTCGAACACCATCGGCACACG
* * * *
14123409 CTGGGCCTTGGTGCGGGCGATTACCTCGATCATCATCGGCACATGCTGGTCAAT
196 CTGGGCCTTGGTGCGAGAGATTACCTCGAGCACCATCGGCACATGCTGGTCAAT
* *
14123463 CACCATCGACACACGCTGGGCTCTGGTGCAGACGGTTGCCTCGATCACCATCGGCACATG-CGGG
1 CACCATCGACACACGCTGGGCTCTAGTGCAGACGGTTGCCTCGATCACCATCGGCACATGTCGAG
* * * * **
14123527 GCCTGGAACGGGCAGTTGCCTCGACCACCATCGATAGAAGAT-GGCCCCTGGTGCAGGCAGTTGT
66 CCCTAGAACGGGCAGTTACCTCGACCACCATCGACAGAAG-TCGGCCCCTGGTGCAGGCAGTTAC
* * * * * * *
14123591 GTCGAACACCATCAGCACACGCTGGGCCCTGGTGCGGGC-GTTGGCCTCGAACACCATCGGCACG
130 CTCGAACACCATCAACACAAGATGGCCCCTGGTGCGGGCGGTT-ACCTCGAACACCATCGGCACA
* * *
14123655 TGCTGGGCCTTGGTGCGAGAGGTTGCCTCGAGCACCATCGGCACA
194 CGCTGGGCCTTGGTGCGAGAGATTACCTCGAGCACCATCGGCACA
14123700 AGCCGGCCCA
Statistics
Matches: 197, Mismatches: 38, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
247 3 0.02
248 138 0.70
249 56 0.28
ACGTcount: A:0.19, C:0.32, G:0.30, T:0.19
Consensus pattern (249 bp):
CACCATCGACACACGCTGGGCTCTAGTGCAGACGGTTGCCTCGATCACCATCGGCACATGTCGAG
CCCTAGAACGGGCAGTTACCTCGACCACCATCGACAGAAGTCGGCCCCTGGTGCAGGCAGTTACC
TCGAACACCATCAACACAAGATGGCCCCTGGTGCGGGCGGTTACCTCGAACACCATCGGCACACG
CTGGGCCTTGGTGCGAGAGATTACCTCGAGCACCATCGGCACATGCTGGTCAAT
Found at i:14130502 original size:165 final size:165
Alignment explanation
Indices: 14130277--14130578 Score: 469
Period size: 165 Copynumber: 1.8 Consensus size: 165
14130267 CCCTTTTGCA
* * *
14130277 TGCTACCGATCTCGCTGTCGGTCCAGCTGCCATAACCCTCAGTCCGACTGGGGCTTAGACATGGA
1 TGCTACCGATCCCGCTGTCGGTCCAGCTACCATAACCCTCAGTCCGACTAGGGCTTAGACATGGA
* * * * *
14130342 ATGAACTCCGTATGCCTAAGCCAACCCATAAAATGAGCGTGCGGACGCTCAGCCGATCGGAGAGG
66 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTCAGCCGACCAGAGAGG
14130407 CAGGATGTCGAGGATCGGCCCGATCTCTCTCTGCG
131 CAGGATGTCGAGGATCGGCCCGATCTCTCTCTGCG
* * * *
14130442 TGCTATCGATCCCGTTGTCGGTCCAGCTACCATAACCCTCGGTCTGACTAGGGCTTAGACATGGA
1 TGCTACCGATCCCGCTGTCGGTCCAGCTACCATAACCCTCAGTCCGACTAGGGCTTAGACATGGA
* * *
14130507 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGGCGCTCGGTCGACCAGAGAGG
66 ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTCAGCCGACCAGAGAGG
14130572 CAGGATG
131 CAGGATG
14130579 CGCAAGTCAG
Statistics
Matches: 122, Mismatches: 15, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
165 122 1.00
ACGTcount: A:0.23, C:0.30, G:0.27, T:0.20
Consensus pattern (165 bp):
TGCTACCGATCCCGCTGTCGGTCCAGCTACCATAACCCTCAGTCCGACTAGGGCTTAGACATGGA
ATGAACTCCGTATGCCTAAGCCAACCCACAAAACGAGCGTACGGACGCTCAGCCGACCAGAGAGG
CAGGATGTCGAGGATCGGCCCGATCTCTCTCTGCG
Found at i:14131560 original size:26 final size:26
Alignment explanation
Indices: 14131524--14131576 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14131514 CCGGTCTGAT
*
14131524 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGCATG
*
14131550 CTTAGATTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATGAACTTCGCATG
14131576 C
1 C
14131577 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGCATG
Found at i:14132442 original size:26 final size:26
Alignment explanation
Indices: 14132406--14132458 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14132396 TCGGTCCGAT
* * *
14132406 CTTAGATTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14132432 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14132458 C
1 C
14132459 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14133127 original size:900 final size:887
Alignment explanation
Indices: 14130864--14136103 Score: 7094
Period size: 895 Copynumber: 5.9 Consensus size: 887
14130854 CAAAATGAGA
** * * * * * *
14130864 GGGCGGGCACTACGCCGGCCAGAGAGGCAAGATGTGCAAGCCATTGATCGATCGGGTAGTAGGTT
1 GGGCGGGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTG
*
14130929 GGTTTAGGCACATCTTTATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
65 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
14130994 ATGGCCCCTTAAGCCTTCATGTGAAATTTCATGGCAAGACGACTCGTTTTCCATTTTTCATGATT
130 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * *
14131059 TTTGAAACTTTTTACGGTCCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACCT
195 TTTGAAACTTTTTACGGTTCGGG--------AAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* * * *
14131124 GGTAGAAGTGATCCTTCTATTTTTTTTGGCATGCACAAAAAAAGTCAGCTAAAAACTCGAAAGTG
252 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG-AAGTG
14131189 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
316 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
14131254 CAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
381 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * *
14131319 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATTATGTGTGCACACCCCCCCGGTCC
446 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CC
* *
14131384 CCCCAATCGTCGGAACCCTAATGCCGCCGATCAGGTTCTCCGGCGATGCTCCCACGATAGTG-CC
509 CCCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCT-CGGCGATGCT-CCACGATGGTGCCC
* * * * * *
14131448 CGAAGCGAAAAAAAATGTGACACCAGCACATGC-CTGAGCCCAGCACGTGCTGTCGCAACCCTCG
572 CG-GGTG-AAAAAAATGCGGCACCAGCACATGCTC-GAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * *
14131512 GTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTTCGCATGC
634 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * **
14131577 CTAAGTCAACCCACAAAATGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCATAAGCC
699 CTAAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* *** * * * * * *
14131642 AAGGATCTACCACATCCCCCTCTACGTGCTGCTGATCTTGCTACCATAACCCTCAGTCCGGTCTG
764 AGGGATC-ACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCTA
*
14131707 ATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA--------GC
828 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * * * * *
14131759 GGGCTGGCACTACATCGACCAAAAAGGCGGGATGCGAAAGCCATGGATCGATGGGGTGGTAGGTG
1 GGGCGGGCACTAC-GCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTG
* * * *
14131824 GGTTTAGGCACATGTTCATATTTCTGCTC-TGCCAATGCCACTTTTATAGCTTTTAAATTCATAC
65 GGTTTAGGCACATCTTCATATTTCTGC-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
14131888 AATGGTCCCTTAAACCTTCATGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTCCACGAT
129 AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
** *
14131953 TTTCAAAACTTTTTACGGTTC--GAGATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
194 TTTTGAAACTTTTTACGGTTCGGGAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * *
14132016 GTGATCCTTGTATTTTT-TTTGCATGCACAAAAAAAATTGAGCTAAAAACTCGAAGTGTATAAGA
259 GTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
14132080 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
323 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
14132145 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCA
388 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * **
14132210 ATATAAGGGCCAAGTACCAGCACGCATCGTACATCATGTGCGCACACCCCCCAACCCCTCCAATC
453 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCAATC
* * * * *
14132275 GTCGGAACCCCAATGTCGTCGGTCAGGTTCTACGACGATGCTCCGACGATGGTGCCTCGGGTGAA
517 GTCGGAACCCCAATGCCGCCGATCAGGTTCT-CGGCGATGCTCC-ACGATGGTGCCCCGGGTGAA
* * * * *
14132340 AAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGTAACCCTCGCTTCGGTCCGA
580 AAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* * * *
14132405 TCTTAGATTGGGAATTAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACC
645 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
14132470 CACGAAACGAGCATGTGGGCGCTCAGCCAGCCAGAGGGGCGGGATGTGCAAGCCAGGGATCGACC
710 CACAAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATC-ACC
* * * * *
14132535 GAGTCCCCTTCTACGTGCTGCCAATCCTGCTACCACAACCCTCAGT-TCGGTCTGATCTTAGACT
774 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCT-GGTCTAATCTTAGACT
* * *
14132599 AGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGT
838 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* *
14132649 GGGCGGCCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTG
1 GGGCGGGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTG
** *
14132714 GGTTTAGGCACATCTTCATATTTCTATCATGCCAATGCCATTTTTATGCCTTGTAAATTCATACA
65 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
14132779 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGGCTCATTTTCTATTTTTCACGATT
130 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* *
14132844 TTTTAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAAGG-GTTTTTGGCCCCAAACT
195 TTTGAAACTTTTTACGGTTCGGG--------AAATTTTTTCAGAAGGAG-TTTTGGCCCCAAACT
* * * * * *
14132908 TGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAACATTCACCCAAAAAATCGAAGTG
251 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
14132973 TACAAGATTTTGCGAACATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATGGCTACTGGCAG
316 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
14133038 CAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAG
381 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
14133103 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-CCCCCCGGCTCC
446 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CC
* * * *
14133167 CCCAATCATCGAAACCCCAATGCCGTCGATCAGGTTCTCTGGCAATGCTCCAACGATGGTGCCCC
510 CCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTC-GGCGATGCTCC-ACGATGGTGCCCC
*
14133232 GGGCGAAAAATAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
573 GGGTGAAAAA-AATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * * * *
14133297 CAGTCTGACCTTAGATTGAGAATGAACTCCGTATGCTTAGACTGGGAACGAACTCCGTATGCCTA
637 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * **
14133362 AGTCAACCCACAAAACGAACGTATGGGCGCTCAACCGGCCAAAGGGATGGGATGCGCAAGCCAGG
702 AGTCAACCCACAAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGG
* * ** * * *
14133427 GATCAGCGGGGTCCCCCTCTACGTGCTGCCGATCCTACTACCGTAACCCTCGATCTGGCCCAATC
767 GATCA-CCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCTAATC
* *
14133492 TTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCAGGTGGGCGGGC
831 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGC
* * *
14133553 AGGCGGGCACTACGCTGGTCAGAGAGGAGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTG
1 GGGCGGGCACTACGC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTG
* * *
14133618 GGTTTAGGTATATCTTCATATTTTTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
65 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
14133683 ATGGTCCCTTTAGCCTTCATTTGAAGTTCCATGGCAAGACGACTCATTTTCTATTTTTCATGATT
130 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * *
14133748 TTCGAAACTTTTTACGGTTC--GAGATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTTGTAGACG
195 TTTGAAACTTTTTACGGTTCGGGAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
14133811 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
260 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
14133876 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
325 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
14133941 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
390 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * *
14134006 ATAAGGGCCAAATACCAGCACCCATCACACATCATGTGCGCACACCCCCTCTGGCCCCCCAATCA
455 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-C-GGCCCCCCAATCG
* * * **
14134071 TCGGAACCCCAATGCTGCCAATCAGGTTCTCCGGCGATGTTCCAACGATGGTGCCCCAGGCGAAA
518 TCGGAACCCCAATGCCGCCGATCAGGTTCT-CGGCGATGCTCC-ACGATGGTGCCCC-GG-GTGA
* *
14134136 AAAAAATGCGGCACCAACACATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCG
579 AAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
*
14134201 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAACGAACTCCGTATGCCTAAGTCAAC
644 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * ** * *
14134266 CCACAAAATGAGAGTGTTGGTGCTCAGCCGGCCAGAGGGATGGGATGCGCATGCCGGGGATCAGC
709 CCACAAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCA-C
* * * * *
14134331 CGGGTCCCCCTCTACGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGCCTAATCTTAGACT
773 CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCTAATCTTAGACT
* * *
14134396 GGGAATGAACTCTGTATGCCTAAGCCAATCGATGAAACGAGC-GGCGGGC
838 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
*
14134445 GGCAGGCGGGCACTACGCTGGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATGGGGTGGTAG
1 -G--GGCGGGCACTACGC-GGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAG
14134510 GTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
62 GTGGGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
14134575 ACAATGGTCCCTTAAGCCTTCATTTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
127 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
**
14134640 ATTTTTGAAACTTTTTACGGTTCGGG--ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCATAG
192 ATTTTTGAAACTTTTTACGGTTCGGGAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
14134703 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
257 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
14134768 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGTAAACC
322 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
14134833 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
387 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14134898 AATATAAGGGCCAAGTACCAGCGCCCATCGCACATCATGTGCGCACACCCCCCGGCCCCGCCAAT
452 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCAAT
* ** * *
14134963 CGCCAAAACCCCAATACCGCCGGTCAGGTTCTC--CGA-----CA--ATGGTGCCCCGGGTGAAA
516 CGTCGGAACCCCAATGCCGCCGATCAGGTTCTCGGCGATGCTCCACGATGGTGCCCCGGGTGAAA
* * * ** *
14135019 AATAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGACACAACCCTCAATCCGGTCTGA
581 AA-AATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
* ** *
14135084 TCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTATATGCTTAAGTCAACC
645 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * **
14135149 CACGAAACGAGCGTGCT-GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGT
710 CACAAAACGAGCGTG-TGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATC-AC
* * * * * *
14135213 CGGGTCCCCCTTTGCCTGCTGCCAATCCTGCTACCACAACCCTCGGTCTGGTCCAATCTTAGGCT
773 CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCTAATCTTAGACT
* * *
14135278 GGGAATGAACTCCGTATGCCTAATCCAACTGACGAAACGAGTGGGCGGGC
838 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
* * * *
14135328 GAGCGGGCACTACGCCGGCCAGAGAGGCGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTG
1 GGGCGGGCACTACG-CGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTG
** * *
14135393 GGTTTAGGCACATCTTCATATTTCTG-TGTGCCAATTCCATTTTTATGGCTTGTAAATTTATACA
65 GGTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
14135457 ATGGTCCCTTAAGCCTTGATGTGAAGTTTCATGGCAAGACGACTCGTTTGCTATTTTTCATGGTT
130 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
*
14135522 TTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
195 TTTGAAACTTTTTACGGTTC-GG-------GAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* * *
14135587 GGTAAATGTGATCCTTGTATTTTTGTTGGCATGCCCAAAAAAATTCAGCT-AAAACTCGAAGTGT
252 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
14135651 ACAAAATTTTGTGACCATTTGAAAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
317 ACAAGATTTTGTGACCATTTG--AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
14135716 GCAAACCTGTATAATCTGAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGAGGGATA
380 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
14135781 GGGGGCCAATATAAAGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
445 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCC
* * * * * *
14135846 CCCTCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGTGATGCTCCAGCGATGGTG-C
509 CCC-CAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCT-CGGCGATGCTCCA-CGATGGTGCC
** * * * * * * *
14135910 CATGGTGAAAAAAAATGTGGCACCAGCACATGCCCGATCCTAGCATGTGCTGCCGTAACCCTAGA
571 CCGGGTG-AAAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* *
14135975 TCCGATCCGATCTTAGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCCGTATGCC
635 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * ** * * * *
14136040 GAAGTCAACCCACGAAACGAGCGTGCAGGTGCTCAGCCGGCCAGCGTGGTGGGATGCGCAAGCC
700 TAAGTCAACCCACAAAACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
14136104 GGGTGTCACG
Statistics
Matches: 3881, Mismatches: 379, Indels: 164
0.88 0.09 0.04
Matches are distributed among these distances:
879 115 0.03
880 85 0.02
881 7 0.00
882 523 0.13
883 77 0.02
884 192 0.05
885 75 0.02
886 1 0.00
888 34 0.01
889 78 0.02
890 344 0.09
891 46 0.01
892 9 0.00
893 8 0.00
894 295 0.08
895 672 0.17
896 61 0.02
897 279 0.07
898 7 0.00
899 74 0.02
900 508 0.13
901 177 0.05
902 12 0.00
903 1 0.00
904 201 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (887 bp):
GGGCGGGCACTACGCGGCCAGAGAGGCGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
TTGAAACTTTTTACGGTTCGGGAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCAATCGTCG
GAACCCCAATGCCGCCGATCAGGTTCTCGGCGATGCTCCACGATGGTGCCCCGGGTGAAAAAAAT
GCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAA
ACGAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCACCGGGTCCC
CCTCTACGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC
Found at i:14133349 original size:26 final size:26
Alignment explanation
Indices: 14133306--14133358 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14133296 CCAGTCTGAC
* *
14133306 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAACGAACTCCGTATG
*
14133332 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGAGAACGAACTCCGTATG
14133358 C
1 C
14133359 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAACGAACTCCGTATG
Found at i:14134232 original size:26 final size:26
Alignment explanation
Indices: 14134203--14134255 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14134193 CCGGTCCGAT
*
14134203 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
14134229 CTTAGACTGGGAACGAACTCCGTATG
1 CTTAGACTGGGAACGAACTCCGTATG
14134255 C
1 C
14134256 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAACGAACTCCGTATG
Found at i:14135121 original size:26 final size:26
Alignment explanation
Indices: 14135085--14135140 Score: 103
Period size: 26 Copynumber: 2.2 Consensus size: 26
14135075 CCGGTCTGAT
14135085 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14135111 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
14135137 CTTA
1 CTTA
14135141 AGTCAACCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14136022 original size:26 final size:26
Alignment explanation
Indices: 14135986--14136038 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14135976 CCGATCCGAT
*
14135986 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14136012 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14136038 C
1 C
14136039 CGAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14141652 original size:26 final size:26
Alignment explanation
Indices: 14141616--14141668 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14141606 CCAATCCGAT
*
14141616 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14141642 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14141668 C
1 C
14141669 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14142552 original size:26 final size:26
Alignment explanation
Indices: 14142514--14142566 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14142504 CTGGTCTGAT
*
14142514 CTTAGATTAGGAATCAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
* * *
14142540 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
14142566 C
1 C
14142567 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:14142705 original size:898 final size:887
Alignment explanation
Indices: 14140908--14142718 Score: 2624
Period size: 898 Copynumber: 2.0 Consensus size: 887
14140898 CTCGGTCCGA
* * * *
14140908 TCTGATCTTAGATTGGTAATGAACTCTGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCG
1 TCTGATCTTAGACTGGGAATGAACTCTGTAAGCCTAAGCCAACCGACAAAACAAGCGGGCGGGCG
*
14140973 GGCAGGCACTACGTCAGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGTTAGGTGG
66 GGCAGGCACTACGTCAGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGG
*
14141038 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
131 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
14141103 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTTTCACGATTTT
196 GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCACGATTTT
**** * * *
14141168 CAAAACTTTTTACGGTTTGGGATTTTTTAAACTTTTTTCAGAAGGATTTTTGGCCCCAAACTTGG
261 CAAAACTTTTTACGAAACGGGATTTGTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
* * *
14141233 TAGATGTGATCCTTGTATTTTTATTGGCACACATAAAAAAATTCAGCTAAAAATTTGAAGTGTAC
326 TAGACGTGATCCTTATATTTTTATTGGCACACATAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
* * ** *
14141298 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
391 AAGATTTTGTGAACAATTGAAAAAACAGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAA
* * * * *
14141363 ACCTATAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
456 ACCCATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGAGATAGGGG
*
14141428 GCCAAGTACCAGCACCCATCACACATCATGAGCGCACACCCCCCGACCCTCCCGATCGCCGGAAC
521 GCCAAGTACCAGCACCCATCACACATCATGAGCGCACACCCCCCGACCCTCCCGATCGCCGAAAC
* * *
14141493 CCCAATGCCGCCGGTCAGGTTCTCCAGTGATGCTCTGGCGATGGTGCCCCGACGAAGAAAAATGT
586 CCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC
* **
14141558 AGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAATCCGATCTTAGAC
651 AGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAATCCGATCTTAGAC
* * * *
14141623 TGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAAC
716 TAGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
14141688 GAGCATGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCACAAGCCGGGGATCGATCGGGTCCCC
781 GAACATGCGGGCGCTCAGACGACCAGAGGGGCAGGATGCACAAGCCGAGGATCGATCGGGTCCCC
* * * * **
14141753 CTCTGCGTGTTGTCGATCCTACTACTGTAACCCTCAATCTGG
846 CTCTGCGTGCTATCGATCCTACTACCGCAACCCTCAATCCAG
* **
14141795 TCTGATCTTAGACTGGGAATGAACTCTGTAAGCCTAAGCCAACCGACGAAACAAGCGGATTGGG-
1 TCTGATCTTAGACTGGGAATGAACTCTGTAAGCCTAAGCCAACCGACAAAACAAGCGG-GCGGGC
* * *
14141859 GGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGTAAG-CTGTGGATCGATAGGGTGGTAGGT
65 GGGCAGGCACTACGTCAGCCAGAGAGGCGGGATGCGCAAGTC-GTGGATCGATAGGGTGGTAGGT
**
14141923 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
129 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
14141988 ATGGTCCTTTAAGGCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATT
194 ATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCACGATT
*
14142053 TTCAAAACTTTTTGCGAAACGGGATTTGTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
259 TTCAAAACTTTTTACGAAACGGGATTTGTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTT
* **
14142118 GGTAGACGTGATCCTTATATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTTGAAGTGT
324 GGTAGACGTGATCCTTATATTTTTATTGGCACACATAAAAAAATTCAGCTAAAAACTTGAAGTGT
*
14142182 ACAAGATTTTGTGAACAATTGAAAAAACAGTCCCCATTCCAGGCACTTTAATGGCTACTGGCAGC
389 ACAAGATTTTGTGAACAATTGAAAAAACAGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGC
* *
14142247 AAACCCGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGATAGATAGG
454 AAACCCATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGAGATA--
* * *
14142312 GGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-C
517 GGG---------G-GCCAAGTACCAGCACCCATCACACATCATGAGCGCACACCCCCCGACCCTC
* * * *
14142376 TCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCT-CTGACGATGCTCCGGTGATGGTGCCC
572 -CCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCAG-CGATGCTCCGGCGATGGTGCCC
* *
14142440 CGACGAAGAAAAATGCGGCACCAGCACAAGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTC
635 CGACGAAGAAAAATGCAGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTC
*** * * *
14142505 TGGTCTGATCTTAGATTAGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTA
700 CAATCCGATCTTAGACTAGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
14142570 AGTCAACCCACGAAACGAACGTGCGGGCGCTCAGACGGCCAGAGGGGCGGGATGCGCAAGCCGAG
765 AGTCAACCCACGAAACGAACATGCGGGCGCTCAGACGACCAGAGGGGCAGGATGCACAAGCCGAG
* * * * * * *
14142635 GATCGGTCGGGTCCTCTTCTGTGTGCTATCGATCTTGCTACCGCAACCCTCGATCCAG
830 GATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTACTACCGCAACCCTCAATCCAG
14142693 TCTGATCTTAGACTGGGAATGAACTC
1 TCTGATCTTAGACTGGGAATGAACTC
14142719 CATATGCTTA
Statistics
Matches: 817, Mismatches: 91, Indels: 21
0.88 0.10 0.02
Matches are distributed among these distances:
886 144 0.18
887 321 0.39
888 6 0.01
897 4 0.00
898 342 0.42
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
TCTGATCTTAGACTGGGAATGAACTCTGTAAGCCTAAGCCAACCGACAAAACAAGCGGGCGGGCG
GGCAGGCACTACGTCAGCCAGAGAGGCGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCACGATTTT
CAAAACTTTTTACGAAACGGGATTTGTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTATATTTTTATTGGCACACATAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
AAGATTTTGTGAACAATTGAAAAAACAGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAA
ACCCATAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGAGATAGGGG
GCCAAGTACCAGCACCCATCACACATCATGAGCGCACACCCCCCGACCCTCCCGATCGCCGAAAC
CCCAATGCCGCCGGTCAGGTTCTCCAGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC
AGCACCAGCACAAGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCAATCCGATCTTAGAC
TAGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAACATGCGGGCGCTCAGACGACCAGAGGGGCAGGATGCACAAGCCGAGGATCGATCGGGTCCCC
CTCTGCGTGCTATCGATCCTACTACCGCAACCCTCAATCCAG
Found at i:14142879 original size:185 final size:185
Alignment explanation
Indices: 14142493--14142910 Score: 534
Period size: 185 Copynumber: 2.3 Consensus size: 185
14142483 TGTGCTGCCA
** * *
14142493 CAACCCTCGGTCTGGTCTGATCTTAGATTAGGAATCAACTCCGTATGCTTAGACTGGGAATGAAC
1 CAACCCTCGGTCCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
*
14142558 TTCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGACGGCCAGAGGGGCGGGAT
66 TTCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGACGACCAGAGGGGCGGGAT
* * * * ** * *
14142623 GCGCAAGCCGAGGATCGGTCGGGTCCTCTTCTGTGTGCTATCGATCTTGCTACCG
131 GCACAAGCCGAGGATCGATCGGGTCCCCCTCTGACTGCTACCAATCTTGCTACCG
* * *
14142678 CAACCCTCGATCCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAC
1 CAACCCTCGGTCCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * *
14142743 -TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGTGCTCA-ACCGACCAGAGGGGCGGG
66 TTC-GTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGA-CGACCAGAGGGGCGGG
* * * * *
14142806 ATGCACAAGTCGGGGATCGATCGGGTCCCCCTCTGACTGCTGCCAATCTTGTTGCCG
129 ATGCACAAGCCGAGGATCGATCGGGTCCCCCTCTGACTGCTACCAATCTTGCTACCG
* * ** * *
14142863 TAGCCCTCGGTCCAGTCCAATATTTGATTGGGAATGAACTCCGTATGC
1 CAACCCTCGGTCCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGC
14142911 CTAAGCCAAC
Statistics
Matches: 198, Mismatches: 33, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
184 3 0.02
185 195 0.98
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (185 bp):
CAACCCTCGGTCCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TTCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGACGACCAGAGGGGCGGGAT
GCACAAGCCGAGGATCGATCGGGTCCCCCTCTGACTGCTACCAATCTTGCTACCG
Found at i:14148703 original size:867 final size:869
Alignment explanation
Indices: 14146003--14149409 Score: 4230
Period size: 867 Copynumber: 3.9 Consensus size: 869
14145993 TATGCTTGGC
* * * * * *
14146003 CGGGTCCCCCTTTACATGCT-TCGATCCTGCTACCGTAACCCTCGGTCCAATCCGATCTTAGACT
1 CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACT
* * * *
14146067 GGGAATGAACTCCGTATGCGTAAGACAACCGACGAAACGAGCGGGCGGACGGGCGGGC-AGGCAC
66 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCCGGCGA-GCAC
* *
14146131 TACGCCGGCCAGAGAGACAGGACGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTTGGCA
130 TACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
** *
14146196 CATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTA
195 CATCTTCATATTTCTGAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * **
14146261 AGCCTTCACGTGAAGTTTCATGGTAAGACGACTCATTTTCTATTTTTCACAATTTTT--AA----
260 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
* *
14146320 --A---------ATTTTTTTGA-AAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTAT
325 TTACGGTTCGGGATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
14146373 TTTT-TTCGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
390 TTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * * * *
14146437 TGAAAAAAGTGTCCCCATTTTAGACACTATATTGGCTACTGGTAGCAAACCTGTAAAATCTCAAA
454 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAA
14146502 TGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAA
519 TGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAA
* * *
14146567 GTACCAGCACCCATCGCACGTCATGTGCGCACACCCCCCCGGCCCCCCCAATCGTCAGAACCCCA
583 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG--CCCCCAATCGCCGGAACCCCA
* ** * * * **
14146632 ATGCCGTCGGTCAGGTTCTCCGGTGATGCTTCGGTGATGGTGCCCCGATGAAGAAAAATACGGGG
646 ATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCA
* * *** *
14146697 CCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTC-GG-TCCGGTCC-AATCTTAGACT
711 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGGATCAACTCCGTATCTTAGACT
* * * *
14146759 GGGAATGAACTCCGTAAGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGA
776 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* *
14146824 GGGGCGGGATGCGCAAGTCGGGGATC-GA
841 GGGGCGGGATGAGCAAGCCGGGGATCGGA
* * * * * * ** *
14146852 TCGGGTCCCCCTCTGCGTGTTGTCGATCCTGC-GATCGCCACCCTTC-ATTCGGTATGACCTTAG
1 -CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG-CCGCAACCC-TCGGTCCAGTCCGATCTTAG
* * *
14146915 ACTGGGAATGAACTACGTATGCTTAAGCCAACTGACGAAACGA----GCGGGCGGG-C-G-GA-C
63 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCCGGCGAGC
* * * *
14146972 ACTATGCCGGCTAAAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
128 ACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
**
14147037 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
193 CACATCTTCATATTTCTGAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * *
14147102 TAAGCCTTCACGTGAAGTTTCATGGCAACATGACTCGTTTTGTATTTTTAACGATTTTTGAAACT
258 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
* ** * *
14147167 TTTTGCGGTTCAAGATTTTTTAAAATTCTTTCAAAAGGAGTTTTGGCCCCAAACTTGGTAGATGT
323 TTTTACGGTTCGGGA----TT----TT-TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
14147232 GATCCTTGGATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAATACTCAAAGTGTACAAGATTT
379 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * * *
14147297 TGTGGCCAGTTGAAAAAAGTGTCCCCATTTCAGACACGTTAATGGCTATTGGCAACAAACCTATA
444 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATA
* * * *
14147362 AAATCTTAAATGCTCTTTAAGGG-GCGTGAGTTCTCCAGGTTTGATGAGAGATAGGAGGCCAATA
509 AAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG-GGCCAATA
* *
14147426 TAAGTGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCCCAATCGCCG
573 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCAATCGCCG
* **
14147491 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAA
638 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGACGAAGAAAA
* * *
14147556 ATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTTGGTCCGGTCTGATCTT
703 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC----T-CGG---GATC--
** *
14147621 AGACTGAGAATGAACTACGTGTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
758 A-ACTCCG--T--A-T-C-T-TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * *
14147686 GAGCGTGTGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGAGGATCGGT
814 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCGGA
* * * *
14147742 CGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCACAACCCTCGGT-CTGGCCTGATCTTAGAC
1 CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCC-GATCTTAGAC
* * ** *
14147806 TGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGTAGGCCGACGAGCAC
65 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCCGGCGAGCAC
* ** * *
14147871 TATGCCGGGTAGAGAGACAGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTCAGGCA
130 TACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* *
14147936 CATCTTCATGTTTCTGAATGCCAATGCCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTA
195 CATCTTCATATTTCTGAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
14148001 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTCTA-TTTTCATGA-TTTTGAAACTTT
260 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
**
14148063 TTACGGTTCGGGA-TTTTTTCAGAAGGAGTTTTGGCCCCAAACTTCATAGACGTGATCCTTGTAT
325 TTACGGTTCGGGATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* *
14148127 TTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAGGTGTACAAGATTTTGCGACCATT
390 TTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* * * *
14148192 TGAAAAAAGTGTCCCTATTTCAGAGACTTTGATGGCTACTGGCAGTAAACCTATAAAATCTCAAA
454 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAA
*
14148257 TGCTCTTTAAAGGG-GTGTGAGTTCTCAAGGTTTGATGAGGGATAAGGGCCAATATAAGGGCCAA
519 TGCTCTTT-AAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAA
* * ** * * * *
14148321 GTACCAGCAACCATTGCACATTGTGTGTGCACA-CCCCCCGGCCCCCGATCGTCGGAAACCCAAT
583 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCAATCGCCGGAACCCCAAT
* * * ** * * * *
14148385 GCCGCCAGTTAGGTTGTCCGGTGATGTTTCGACGATGGTGCCCCGACGAAGAAAAATGCGACAGC
648 GCCGCCGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
* * *
14148450 AGCACATGCCCGAGCCCAGTATGTGCTGCCACAACCCTCGGGAATGAACTCCGTATGCTTAGACT
713 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGG-ATCAACTCCGTAT-CTTAGACT
14148515 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
776 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * *
14148580 GGGGCGTGATGTGCATGCCGGGGATCGGA
841 GGGGCGGGATGAGCAAGCCGGGGATCGGA
* * ** *
14148609 CGGGTCCCCTTCTGTGTGCTACCGATCTTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACT
1 CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACT
* * * *
14148674 GGGAATGACCTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCAGGCGGGCACT
66 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCCGGCGAGCACT
* * * *
14148739 ACGCCGGCCAGAGAGACGGGATGCGTATGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
131 ACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
*
14148804 ATCTTTATATTTCT-ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
196 ATCTTCATATTTCTGA-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
14148868 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGTGATTTTTGAAAGTTT
260 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
** *
14148933 TTGTGGTTCGAGATTTTTTAAATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
325 TTACGGTTCG-G--------GATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
* * * *
14148998 TCCTTATATTTTTTTTGGCATGCA-AAAAAAAGTTCAGCTGAAAACTTGAAGTGTACAAGATTTT
381 TCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * *
14149062 GTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTACTGGTAGCAAACCTGTAA
445 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAA
* * * *
14149127 AATCTCAAATGCTCTTTAAGGGTGTATGAGTTCTTAAGGTTTGATGAGGGATAGGGGCCAGTATA
510 AATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATA
* * *
14149192 CGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCGCCCCCGATCGCCGG
575 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCAATCGCCGG
* * *
14149257 AACCCCAATGCCGCTGGTCAGGTTCTCCGACAATGC-TCTGGTGATGGTGCCCCGACGAAGAAAA
639 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTC-GGCGATGGTGCCCCGACGAAGAAAA
* * ***
14149321 ATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCTGCAACCCTC-GG-TCCGGTCCG-AT
703 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGGATCAACTCCGTAT
* *
14149383 CTTAGACTAGGAATGAACTTCGTATGC
768 CTTAGACTGGGAATGAACTCCGTATGC
14149410 TTAGACTGGG
Statistics
Matches: 2194, Mismatches: 273, Indels: 154
0.84 0.10 0.06
Matches are distributed among these distances:
843 175 0.08
845 4 0.00
847 8 0.00
850 16 0.01
851 65 0.03
852 2 0.00
860 1 0.00
864 2 0.00
866 1 0.00
867 459 0.21
868 15 0.01
869 98 0.04
870 185 0.08
871 4 0.00
872 2 0.00
873 1 0.00
874 4 0.00
875 1 0.00
876 27 0.01
877 6 0.00
878 17 0.01
879 180 0.08
880 74 0.03
881 107 0.05
884 172 0.08
885 154 0.07
886 34 0.02
887 1 0.00
888 5 0.00
889 171 0.08
890 2 0.00
893 7 0.00
894 23 0.01
895 7 0.00
896 7 0.00
897 157 0.07
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (869 bp):
CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCCGGCGAGCACT
ACGCCGGCCAGAGAGACAGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTT
TACGGTTCGGGATTTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATG
CTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCAATCGCCGGAACCCCAATGCC
GCCGGTCAGGTTCTCCGACGATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGGATCAACTCCGTATCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
GGGATGAGCAAGCCGGGGATCGGA
Found at i:14149421 original size:26 final size:26
Alignment explanation
Indices: 14149383--14149435 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14149373 CCGGTCCGAT
*
14149383 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14149409 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14149435 C
1 C
14149436 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14150099 original size:26 final size:26
Alignment explanation
Indices: 14150059--14150108 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
14150049 ATCCGATCTG
14150059 AGACTGGAAATGAACTCCATATGCTT
1 AGACTGGAAATGAACTCCATATGCTT
*
14150085 AGACTGGGAAA-GAACTCCGTATGC
1 AGACT-GGAAATGAACTCCATATGC
14150109 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 17 0.77
27 5 0.23
ACGTcount: A:0.34, C:0.20, G:0.24, T:0.22
Consensus pattern (26 bp):
AGACTGGAAATGAACTCCATATGCTT
Found at i:14150878 original size:11 final size:11
Alignment explanation
Indices: 14150858--14150901 Score: 70
Period size: 11 Copynumber: 4.0 Consensus size: 11
14150848 CGGTTAGGTT
*
14150858 CTCCGGCGATG
1 CTCCGACGATG
14150869 CTCCGACGATG
1 CTCCGACGATG
14150880 CTCCGACGATG
1 CTCCGACGATG
*
14150891 CTCCTACGATG
1 CTCCGACGATG
14150902 GTGCCCCGGC
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
11 31 1.00
ACGTcount: A:0.16, C:0.36, G:0.27, T:0.20
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:14151024 original size:26 final size:26
Alignment explanation
Indices: 14150982--14151034 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14150972 CTGGTCTGAT
*
14150982 CTTAGACTAGGATTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14151008 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14151034 C
1 C
14151035 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14151788 original size:929 final size:902
Alignment explanation
Indices: 14149735--14155142 Score: 5848
Period size: 896 Copynumber: 6.1 Consensus size: 902
14149725 TGATCCTTGT
*
14149735 ATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
14149800 TGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14149865 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG--CCCCC--
131 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* *** * * * * *
14149926 TCG--G-AACCCTAATGTTGTCGGTCAGGTTCTCCGGTGATGTTCTGACGA--TGGTGCCC--CG
196 TCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGTGGTGCCCGATG
* * * ** * *
14149984 G-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGTGACCCTTGGTCC
261 GTCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC-TCGTCT
* * * *
14150048 GATCCGATCTGAGACTGGAAATGAACTCCATATGCTTAGACTGGGAAAGAACTCCGTATGCCTAA
325 GATCTGATCTTAGACTGG--ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* *
14150113 GTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGGG
388 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * ** *
14150178 ATCGGTCGGGTCCCCCTCTACGTGTTGCCGATCCTGCTACCGCAACCCTCGGTCTAGTCAGATCT
453 ATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACTACAACCCTCGGTCTAGTCTGATCT
* * *
14150243 TAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCA
518 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC--GCGGGCGGGCG
** *
14150308 GGCACTACGCCGGCCAGAGAGATAGGATGCGCAATCCGTGGATCGATAGGGTGGTAGGTGGGTTT
581 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
14150373 AGGCACATCTTCATGTTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTC
646 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
14150438 CCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTTATGATTTTTGAA
711 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
** *
14150503 ACTTTTTATGGTTCGTGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAACCTTGGTAGA
776 ACTTTTTACAGTTCG-GATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
14150568 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTGAGAACTCGAAGTGTACAAG
839 CATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
14150632 ATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14150697 TGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
14150762 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACAACCCCCCGGCCCCCCCGA
131 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* * * * * * *
14150827 TCACCGGAATCCCATTGCCACCGGTTAGGTTCTCCGGCGATGCTCCGACGATGCTCCGACGATGC
196 TCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATG-T--G--G-TG-
* * * * * *
14150892 TCCTACGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAACACATACCCGACCCCAACATCTACT
254 -CC--CGATGGT----C-G--AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** *
14150957 GTCATAACCCTCAGTCTGGTCTGATCTTAGACTAGGATTGAACTCCGTATGCTTAGACTGGGAAT
309 GTCGCAACCCTC-GTCTGATCTGATCTTAGACT-GGA-TGAACTCCGTATGCTTAGACTGGGAAT
* * *
14151022 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTCAGCCGGCCAGAGGGGCG
371 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCG
* * * * * * * * *
14151087 TGATGCGCATGTCGAGGATTGGAT-GGGTCCCCTTCTATGTGCTACCGATCTTGCTACTGCAACC
436 GGATGCGCAAGCCGGGGA-TCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACTACAACC
* * * *
14151151 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAACCGACAAAACGAG
500 CTCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * **
14151216 CGAGCAGGCGGGCGGGCGGGCGGGCATTACACCAGCCAGAGAGACGGGATAAGCAAGCCGTGGAT
565 CG-G-A--C--GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
*
14151281 CGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
624 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
14151346 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCGA-GGTAAGACGACTCGTT
689 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGACGACTCGTT
* * * * * * *
14151410 TTTTACTTTTCACGATTTTTGAAACTTTCTATAGTTCGGCATTTTTTAAAATAGTTTTGAAAAGA
753 TTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGG-ATTTTTTAAAAT-TTTTTGGAAGGA
* * *
14151475 GTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATACACAAAAAAATTCAG
816 GTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
*
14151539 CTAAGAACTCGAAGTGTACAAG
881 CTAAAAACTCGAAGTGTACAAG
*
14151561 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
14151626 TGTAAAATCTCAAATCCACTTTAAGGGGGTGTGAGTTCTCAAGCTTTGATGAGGGATAGGGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14151691 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCCGGCCCCCCCGA
131 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
*
14151756 TAGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGA--TGGTGCCCCGA-
196 TCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGTGGTG-CCCGAT
*
14151818 ---CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATATGCTGTCGCAACCCTCGATC
260 GGTCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCG-TC
* * *
14151880 CGATCCGATCTTAGACTGGGATTGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
324 TGATCTGATCTTAGACT-GGA-TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * *
14151945 AGCCAACCCAGGAAACGAGCGTGTGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGG
387 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * * ** * * * **
14152010 GATCGACCGGGTCCCTCTCTAGGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTTTGGTCCAATC
452 GATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACTACAACCCTCGGTCTAGTCTGATC
* * * *
14152075 TTAGACTGGCAATGAACTCCGTATGCCTATGCCATCCGACGAAACGAGCGGA------AGGGCGG
517 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGCGGGCGGGCGG
* ** * * *
14152134 GCACTACGTCGGCCAGAGAGGTGAGATGCGCAAGCTGTAGATCGATAGGGTGGTAGGTGGGTTTA
582 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
14152199 GGCACATCTTCATATTTCTGCGTGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
647 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
** * *
14152264 CTTAAGCCTTCACGTTTAGTTTCATGGCACGACGACTCGTTTTCTATTTTTCACTATTTTTGAAA
712 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * *
14152329 CTTTTTACAGATCGGGATTTTTTAATATTTTTTTGGAAGCAGTTTTGGCCCCAAACTTGGTAGAC
777 CTTTTTACAGTTC-GGATTTTTTAA-AATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
14152394 ATGATTCTTGTATTTTTGTTGGCCTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
840 ATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
14152457 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
** * *
14152522 TGTAAAATCTCAAATGCTCTTTAAAAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGAGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
14152587 AATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACACCCCCCCCGGCCCCCCCG
131 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCCGGCCCCCCCG
* * * * * *
14152652 ATCGTCGAAACCCCAA-AGCTGCCAGTCAGGTTCTCCGACGATGCTTCG--G-TGATGGTACCC-
195 ATCGCCGAAACCCCAATA-CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATG-TGGTGCCCG
* * * *
14152712 -TGG-CGAAGAAAAATGTGCCACCAGCACATGCCCAAGCCTAGCATGTGCCGTCGCAACCCTCG-
258 ATGGTCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGT
* *
14152774 --G-TCTGATC-----C--GAT---CT---TA----T--ACTGGGAATGAACTTCGTATGACTAA
323 CTGATCTGATCTTAGACTGGATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
** * *
14152817 GTCAACCCACGAAACGAGCGTGCGGAAGCTCAGCCGACCAGAGGGGTGGGATGCTCAAGCCGGGG
388 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * *
14152882 ATCGATCGGGTCCCCCTCTACATGCTACCGATCCTGCTGCTACAACCCTCGGTCTGGTCTGGTCT
453 ATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACTACAACCCTCGGTCTAGTCTGATCT
* * * * * *
14152947 TTGACTGGGAAAG-ACTCCGTATGCCTAGGCCAATCGACGAAATGAGCAAGCG-GGCGGGCGGGC
518 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GACGCGGGCGGGC
* * * *
14153010 GAGCACTACACCGGCCAGAAAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
580 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** *
14153075 TAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGAT
645 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
** * **
14153140 CCCTTAAGCCTTCACGTGAAGTTTCATGGTGAGACAACTCGTTTTCTATTTTTCACGATTTTCAA
710 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
14153205 AACTTTTTGCAATTTGGGATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAG
775 AACTTTTTAC-AGTTCGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAG
** * *
14153269 ATGTCATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTTAGCTAAAAACTC-----G---AAG
838 ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
14153325 ----TGT-A-C---------AA--------A--T--G---CTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * ** * * *
14153360 TGTAAAATCTCAAATGGTCTTTAAAGGGGTGTGAG-TTCTCGAG-GTTTAATGA-G-GGATA-GG
66 TGTAAAATCTCAAATGCTCTTT-AAGGGG-GTGTGAGT-TCTCGAGGTT--TGATGAGG-GATAG
* * * * * ** * * * * *
14153420 GGGCCAATATA-AGGGCCAAGTACCAGCACGCACCGCA-CA-TCAT-GTGCGCACAC-CCCCC-C
125 GGGGCCA-ATATAAGGGCCA--AGTACCA-GCACC-CATCACACATCATGTGCGCACACCCCCCC
** ** * * *
14153479 AACCCCCCTAATCGAC-AGAACCCCAA-AGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGA-
185 GGCCCCCCCGATCGCCGA-AACCCCAATA-CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
* ** * * *
14153541 -TGG-GCAC--TGGT-GAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCG
248 GTGGTGCCCGATGGTCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
* *
14153601 TAACCCTCGGT-TCGATCTGACCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAA
313 CAACCCTC-GTCT-GATCTGATCTTAGACT-GG-ATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * * **
14153664 ATCCGTATGCCTAAGTCAACCCACGAAACGAGGGTGTGGGTGCTTAGCCGACCAGAGGTACGGGA
374 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGA
* * * * * *
14153729 AGCGCAAGTCGGGGATTG-GCTGGGTCCCCCCTCTACGTGCTGCCGATCCTGCT-GTCACAACCC
439 TGCGCAAGCCGGGGATCGATC-GGGT-CCCCCTCTACGTGCTACCGATCCTGCTACT-ACAACCC
**
14153792 TCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCAACCGAC-AAA--A-
501 TCGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACCGACGAAACGAG
*
14153853 C-GA-GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAG
565 CGGACGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
* *
14153916 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGACAATGCCATTTTTATGGCTTGTA
630 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
*
14153981 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATT
695 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * *
14154046 TTTCACGATTTTTTAAACTTTTTACGGTT-GAAGATTTTTTAAAATTTTTTCAGAAGGATTTTTG
760 TTTCACGATTTTTGAAACTTTTTACAGTTCG--GATTTTTTAAAATTTTTT-GGAAGGAGTTTTG
* ** * * **
14154110 GCCCCGAAGATGATAGTCATGATCCTTGTATTTTTGTTGGTGTGCTA-AAAAAAATTCAGCTAAA
822 GCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAA
14154174 AACTCGAAGTGTACAAG
886 AACTCGAAGTGTACAAG
* *
14154191 ATTTTGTGACCATTTGAAAAACGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * **
14154256 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCAAGGTTTGACGAGGGATAGGGGAAC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
14154321 AATATAAGGGCCAAGAACCAGCACCCATCACACATCATGTGCACACACCCCCCCGGCCCCCCCGA
131 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* ** * *
14154386 TCGCCAAAACCCCAATGTCGTCGGTTAGGTTCTCCGGCGATGCTCCG--G-TGATGGTGCTCCGA
196 TCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATG-TGGTGC-CCGA
* *
14154448 ----CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAA----C--C
259 TGGTCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGTC
*
14154503 T--TC-GA---T---CTGG-T---CT--G-AT-CTTAGACTGGGAA-AACACTCCGTATGCCTAA
324 TGATCTGATCTTAGACTGGATGAACTCCGTATGCTTAGACTGGGAATGA-ACTCCGTATGCCTAA
* * * * *
14154550 GTCAACCCACGAAACAAGCGTACAGGCGCTCAGCC-AGCCAGAGGGGCAGGATGTGCAAGCCGGG
388 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * *
14154614 GATCGATCGAGTCCCCCTCTGCGTGCTACCTATCCTGTTACTACAACCCTTGGTCCAGTCTGATC
452 GATCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACTACAACCCTCGGTCTAGTCTGATC
* * * ** * * * * **
14154679 TTAGAGTGGGAATGAACTCTGTATACCTAAGAAAAATCGATGAAATGAGCGGGTAGGCGCACGGG
517 TTAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACCGACGAAACGAGC-GG-ACGCGGGCGGG
* * ** * *
14154744 TGGGCACTACGTCAACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTACGTGGGT
579 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* **
14154809 TTAGGCACATCTTCATATTTCTACATGCCAATGAAATTTTTATGGCTTGTAAATTCATACAATGG
644 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
14154874 TCCCTTAAGCCTTCACGTGAAGTTTCATGTCAAGACGTCTCGTTTTCTATTTTTCATGATTTTTG
709 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * **
14154939 AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCGAAGATGGTA
774 AAACTTTTTACAGTTC-GGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTA
* ** * * *
14155004 GTCATGATCCTTGTATTTTTGTTGGTGTGCAAAAAAAAAATTCAGCTAAAAACTGGAAATGTACA
837 GACATGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
14155069 AG
901 AG
*
14155071 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14155136 TATAAAA
66 TGTAAAA
14155143 CCTGCCAAGT
Statistics
Matches: 3831, Mismatches: 486, Indels: 405
0.81 0.10 0.09
Matches are distributed among these distances:
836 54 0.01
837 50 0.01
838 50 0.01
839 21 0.01
840 20 0.01
841 17 0.00
842 6 0.00
843 3 0.00
845 1 0.00
846 1 0.00
849 1 0.00
850 2 0.00
853 4 0.00
854 1 0.00
855 2 0.00
856 211 0.06
857 55 0.01
858 21 0.01
860 3 0.00
861 82 0.02
862 60 0.02
863 20 0.01
864 11 0.00
866 3 0.00
868 3 0.00
870 33 0.01
871 228 0.06
872 82 0.02
873 4 0.00
874 1 0.00
875 3 0.00
876 27 0.01
877 57 0.01
878 197 0.05
879 278 0.07
880 106 0.03
881 3 0.00
883 1 0.00
884 3 0.00
887 3 0.00
888 2 0.00
889 1 0.00
891 4 0.00
892 13 0.00
893 13 0.00
894 21 0.01
895 237 0.06
896 343 0.09
897 342 0.09
898 1 0.00
899 5 0.00
901 2 0.00
903 1 0.00
904 33 0.01
905 1 0.00
906 5 0.00
907 258 0.07
909 2 0.00
910 1 0.00
911 1 0.00
912 2 0.00
914 2 0.00
916 1 0.00
918 5 0.00
920 2 0.00
921 2 0.00
922 1 0.00
923 1 0.00
924 2 0.00
925 2 0.00
926 255 0.07
927 6 0.00
928 1 0.00
929 307 0.08
930 227 0.06
931 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
TCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGTGGTGCCCGATG
GTCGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGTCTG
ATCTGATCTTAGACTGGATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATC
GATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACTACAACCCTCGGTCTAGTCTGATCTTAG
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGCGGGCGGGCGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTACAGTTCGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
Found at i:14151925 original size:26 final size:26
Alignment explanation
Indices: 14151889--14151941 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14151879 CCGATCCGAT
* *
14151889 CTTAGACTGGGATTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14151915 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14151941 C
1 C
14151942 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14152635 original size:896 final size:894
Alignment explanation
Indices: 14149735--14155142 Score: 5880
Period size: 897 Copynumber: 6.1 Consensus size: 894
14149725 TGATCCTTGT
*
14149735 ATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
14149800 TGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCGAGGTTTCATGAGGGATAGGGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14149865 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG--CCCCC--
131 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* *** * * * * *
14149926 TCG--G-AACCCTAATGTTGTCGGTCAGGTTCTCCGGTGATGTTCTGACGATGGTGCCCCGGCGA
196 TCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGA
* * * ** *
14149988 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGTGACCCTTGGTCCGATCC
261 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC-T-CTCCGATCC
* * * *
14150053 GATCTGAGACTGGAAATGAACTCCATATGCTTAGACTGGGAAAGAACTCCGTATGCCTAAGTCAA
324 GATCTTAGACTGG-GATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
14150118 CCCACGAAATGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
388 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * *
14150183 TCGGGTCCCCCTCTACGTGTTGCCGATCCTGCTACCGCAACCCTCGGTCTAGT-CAGATCTTAGA
453 TCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCTAGTCCA-ATCTTAGA
* *
14150247 TTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGACGGGCGGGCGGGCAGGCA
517 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGA---GCGGGC--G--GGCA
* *
14150312 CTACGCCGGCCAGAGAGA-TAGGATGCGCAATCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
575 CTACGCCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
14150376 CACATCTTCATGTTTCTGCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCT
639 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
14150441 TAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTTATGATTTTTGAAACT
704 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
** * * * *
14150506 TTTTATGGTTCGTGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAACCTTGGTAGACGT
769 TTTTACAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
* * *
14150571 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTGAGAACTCGAAGTGTACAAG
834 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
14150632 ATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14150697 TGTAAATTCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
14150762 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACAACCCCCCGGCCCCCCCGA
131 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* * * * * * *
14150827 TCACCGGAATCCCATTGCCACCGGTTAGGTTCTCCGGCGATGCTCCGACGATGCTCCGACGATGC
196 TCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGA---T--G--G-TGC
* * * * * *
14150892 TCCTACGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAACACATACCCGACCCCAACATCTACT
253 -CC--CGA--------C-G--AAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
** * * * *
14150957 GTCATAACCCTCAGTCTGGTCTGATCTTAGACTAGGATTGAACTCCGTATGCTTAGACTGGGAAT
304 GTCGCAACCCTC--TCCGATCCGATCTTAGACTGGGA-TGAACTCCGTATGCTTAGACTGGGAAT
* * *
14151022 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTCAGCCGGCCAGAGGGGCG
366 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCG
* * * * * * * * **
14151087 TGATGCGCATGTCGAGGATTGGAT-GGGTCCCCTTCTATGTGCTACCGATCTTGCTACTGCAACC
431 GGATGCGCAAGCCGGGGA-TCGATCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACC
* ** * * *
14151151 CTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAACCGACAAAACGAG
495 CTCGGTCTAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * * * **
14151216 CGAGCAGGCGGGCGGGCGGGCGGGCATTACACCAGCCAGAGAGACGGGATAAGCAAGCCGTGGAT
560 CG-G-A---------GCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGAT
*
14151281 CGATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
614 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
14151346 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCGA-GGTAAGACGACTCGTT
679 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC-ATGGCAAGACGACTCGTT
* * * * * * * *
14151410 TTTTACTTTTCACGATTTTTGAAACTTTCTATAGTTCGGCATTTTTTAAAATAGTTTT-GAAAAG
743 TTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAAT-TTTTTCGGAAGG
* * *
14151474 AGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATACACAAAAAAATTCA
807 AGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
*
14151538 GCTAAGAACTCGAAGTGTACAAG
872 GCTAAAAACTCGAAGTGTACAAG
*
14151561 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
14151626 TGTAAAATCTCAAATCCACTTTAAGGGGGTGTGAGTTCTCAAGCTTTGATGAGGGATAGGGGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14151691 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCCGGCCCCCCCGA
131 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
*
14151756 TAGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGA
196 TCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGA
*
14151821 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATATGCTGTCGCAACCCTCGATCCGATCC
261 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTC--TCCGATCC
* *
14151886 GATCTTAGACTGGGATTGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
324 GATCTTAGACTGGGA-TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
14151951 CCCAGGAAACGAGCGTGTGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGA
388 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * * * * * *
14152016 CCGGGTCCCTCTCTAGGTGCTGCCAATCCTGCTGCCGCAACCCTCAGTTTGGTCCAATCTTAGAC
453 TCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCTAGTCCAATCTTAGAC
* * * * *
14152081 TGGCAATGAACTCCGTATGCCTATGCCATCCGACGAAACGAGCGGA-AGGGCGGGCACTACGTCG
518 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAGCGGGCGGGCACTACGCCG
** * *
14152145 GCCAGAGAGGTGAGATGCGCAAGCTGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
583 GCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
14152210 ATATTTCTGCGTGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
648 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
** * * *
14152275 ACGTTTAGTTTCATGGCACGACGACTCGTTTTCTATTTTTCACTATTTTTGAAACTTTTTACAGA
713 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGT
* * * *
14152340 TCGGGATTTTTTAATATTTTTTTGGAAGCAGTTTTGGCCCCAAACTTGGTAGACATGATTCTTGT
778 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
*
14152405 ATTTTTGTTGGCCTGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
843 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
14152457 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
** * *
14152522 TGTAAAATCTCAAATGCTCTTTAAAAGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGAGGCC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
14152587 AATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCACACCCCCCCCGGCCCCCCCG
131 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCCGGCCCCCCCG
* * * * * ** * * *
14152652 ATCGTCGAAACCCCAA-AGCTGCCAGTCAGGTTCTCCGACGATGCTTCGGTGATGGTACCCTGGC
195 ATCGCCGAAACCCCAATA-CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
* * * *
14152716 GAAGAAAAATGTGCCACCAGCACATGCCCAAGCCTAGCATGTGCCGTCGCAA-CC-CT-CG----
259 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCTCCGATCC
* * *
14152774 G----T---C-----TG-A-TCCG-AT-CTTATACTGGGAATGAACTTCGTATGACTAAGTCAAC
324 GATCTTAGACTGGGATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** * *
14152823 CCACGAAACGAGCGTGCGGAAGCTCAGCCGACCAGAGGGGTGGGATGCTCAAGCCGGGGATCGAT
389 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* * * * *** *
14152888 CGGGTCCCCCTCTACATGCTACCGATCCTGCTGCTACAACCCTCGGTCTGGTCTGGTCTTTGACT
454 CGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCTAGTCCAATCTTAGACT
* * * * *
14152953 GGGAAAG-ACTCCGTATGCCTAGGCCAATCGACGAAATGAGCAAGCGGGCGGGCGGGCGAGCACT
519 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GAGCGGGC--G-G-GCACT
* *
14153017 ACACCGGCCAGAAAGAC-AGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
577 ACGCCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
** *
14153081 CATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGATCCCTTA
641 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
** * **
14153146 AGCCTTCACGTGAAGTTTCATGGTGAGACAACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
706 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* * * * ** *
14153211 TTGCAATTTGGGATTTTTT-AAATTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGATGTCA
771 TTACAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
*
14153275 TCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTTAGCTAAAAACTC-----G---AAG
836 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
14153325 ----TGT-A-C---------AA--------A--T--G---CTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * ** * * *
14153360 TGTAAAATCTCAAATGGTCTTTAAAGGGGTGTGAG-TTCTCGAG-GTTTAATGA-G-GGATA-GG
66 TGTAAAATCTCAAATGCTCTTT-AAGGGG-GTGTGAGT-TCTCGAGGTT--TGATGAGG-GATAG
* * * * * ** * * * * *
14153420 GGGCCAATATA-AGGGCCAAGTACCAGCACGCACCGCA-CA-TCAT-GTGCGCACAC-CCCCC-C
125 GGGGCCA-ATATAAGGGCCA--AGTACCA-GCACC-CATCACACATCATGTGCGCACACCCCCCC
** ** * * *
14153479 AACCCCCCTAATCGAC-AGAACCCCAA-AGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGAT
185 GGCCCCCCCGATCGCCGA-AACCCCAATA-CCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
* * ** ** * * * *
14153542 GG-GCACTGGTGAAGAAAAATACGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACC
248 GGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACC
* * * *
14153606 CTCGGTTCGATCTGACCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAAATCCGT
313 CTC--TCCGATCCGATCTTAGACTGGG-ATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * ** *
14153670 ATGCCTAAGTCAACCCACGAAACGAGGGTGTGGGTGCTTAGCCGACCAGAGGTACGGGAAGCGCA
375 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCA
* * * * **
14153735 AGTCGGGGATTG-GCTGGGTCCCCCCTCTACGTGCTGCCGATCCTGCTGTCACAACCCTCGGTCT
440 AGCCGGGGATCGATC-GGGT-CCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCT
*
14153799 AGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCCAACCGACAAAACGAGCGG-GCG
503 AGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CCAACCGACGAAACGAGCGGAGCG
14153863 GGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
567 GGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
14153928 GTTTAGGCACATCTTCATATTTCTGTATGACAATGCCATTTTTATGGCTTGTAAATTCATACAAT
632 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
14153993 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTT
697 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * * * **
14154058 TTAAACTTTTTACGGTT-GAAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCGAAGATG
762 TGAAACTTTTTACAGTTCG-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * **
14154122 ATAGTCATGATCCTTGTATTTTTGTTGGTGTGCTA-AAAAAAATTCAGCTAAAAACTCGAAGTGT
826 GTAGACATGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGT
14154186 ACAAG
890 ACAAG
* *
14154191 ATTTTGTGACCATTTGAAAAACGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * **
14154256 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCAAGGTTTGACGAGGGATAGGGGAAC
66 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
14154321 AATATAAGGGCCAAGAACCAGCACCCATCACACATCATGTGCACACACCCCCCCGGCCCCCCCGA
131 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
* ** * * ** *
14154386 TCGCCAAAACCCCAATGTCGTCGGTTAGGTTCTCCGGCGATGCTCCGGTGATGGTGCTCCGACGA
196 TCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGA
* *
14154451 AGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAA--C-CT----T-CGA
261 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCTCCGATCCGA
*
14154508 ---T---CT-GG-T---CT--G-AT-CTTAGACTGGGAA-AACACTCCGTATGCCTAAGTCAACC
326 TCTTAGACTGGGATGAACTCCGTATGCTTAGACTGGGAATGA-ACTCCGTATGCCTAAGTCAACC
* * * * *
14154557 CACGAAACAAGCGTACAGGCGCTCAGCC-AGCCAGAGGGGCAGGATGTGCAAGCCGGGGATCGAT
390 CACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* * * * * * * ** *
14154621 CGAGTCCCCCTCTGCGTGCTACCTATCCTGTTACTACAACCCTTGGTCCAGTCTGATCTTAGAGT
454 CGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCTAGTCCAATCTTAGACT
* * ** * * * *
14154686 GGGAATGAACTCTGTATACCTAAGAAAAATCGATGAAATGAGCGGGTAGGCGCACGGGTGGGCAC
519 GGGAATGAACTCCGTATGCCTAAG-CCAACCGACGAAACGAGC-GG-A---G--CGGGCGGGCAC
* ** * * *
14154751 TACGTCAACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTACGTGGGTTTAGGCA
576 TACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
* **
14154816 CATCTTCATATTTCTACATGCCAATGAAATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
641 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
14154881 AGCCTTCACGTGAAGTTTCATGTCAAGACGTCTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
706 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
* ** * * ** *
14154946 TTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCGAAGATGGTAGTCATGA
771 TTACAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGA
** * * *
14155011 TCCTTGTATTTTTGTTGGTGTGCAAAAAAAAAATTCAGCTAAAAACTGGAAATGTACAAG
836 TCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
14155071 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACC
1 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14155136 TATAAAA
66 TGTAAAA
14155143 CCTGCCAAGT
Statistics
Matches: 3830, Mismatches: 508, Indels: 363
0.81 0.11 0.08
Matches are distributed among these distances:
836 49 0.01
837 53 0.01
838 51 0.01
839 20 0.01
840 20 0.01
841 13 0.00
842 6 0.00
843 3 0.00
845 2 0.00
849 1 0.00
852 1 0.00
853 2 0.00
855 1 0.00
856 199 0.05
857 57 0.01
858 24 0.01
859 1 0.00
860 11 0.00
861 83 0.02
862 66 0.02
863 17 0.00
864 18 0.00
866 3 0.00
868 3 0.00
870 33 0.01
871 239 0.06
872 82 0.02
873 6 0.00
874 5 0.00
875 4 0.00
876 21 0.01
877 64 0.02
878 194 0.05
879 274 0.07
880 104 0.03
881 4 0.00
884 2 0.00
887 2 0.00
888 2 0.00
889 1 0.00
891 3 0.00
892 10 0.00
893 12 0.00
894 25 0.01
895 238 0.06
896 340 0.09
897 344 0.09
899 5 0.00
901 2 0.00
903 1 0.00
904 33 0.01
905 1 0.00
906 4 0.00
907 258 0.07
909 2 0.00
910 1 0.00
911 1 0.00
912 3 0.00
913 2 0.00
915 2 0.00
918 3 0.00
920 2 0.00
921 3 0.00
922 1 0.00
923 1 0.00
924 2 0.00
925 2 0.00
926 253 0.07
927 4 0.00
928 1 0.00
929 305 0.08
930 210 0.05
931 5 0.00
932 1 0.00
934 9 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
TCGCCGAAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGA
AGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCTCCGATCCGA
TCTTAGACTGGGATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
GGTCCCCCTCTACGTGCTACCGATCCTGCTACCACAACCCTCGGTCTAGTCCAATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGAGCGGGCGGGCACTACGCCGGCC
AGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTCG
GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATT
TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
Found at i:14153668 original size:25 final size:26
Alignment explanation
Indices: 14153622--14153673 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14153612 TCGATCTGAC
*
14153622 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
14153648 CTTAGACT-GGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
14153673 C
1 C
14153674 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:14155375 original size:26 final size:26
Alignment explanation
Indices: 14155337--14155389 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14155327 CCAATCTAAT
* *
14155337 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14155363 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14155389 C
1 C
14155390 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14157169 original size:26 final size:26
Alignment explanation
Indices: 14157133--14157182 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14157123 CCAGTCTGAT
14157133 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGGGAATGAACTCCGTACG
14157159 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14157183 TGCCTAAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTACG
Found at i:14158062 original size:26 final size:26
Alignment explanation
Indices: 14158033--14158085 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14158023 CCAGTCCGAT
14158033 CTTACACTGAGAATGAACTCCATATG
1 CTTACACTGAGAATGAACTCCATATG
* * *
14158059 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGAGAATGAACTCCATATG
14158085 C
1 C
14158086 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTACACTGAGAATGAACTCCATATG
Found at i:14159820 original size:26 final size:26
Alignment explanation
Indices: 14159791--14159843 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14159781 CTGGTCCGAT
14159791 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14159817 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14159843 C
1 C
14159844 CTACGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14161555 original size:26 final size:26
Alignment explanation
Indices: 14161526--14161578 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14161516 CTGGTCCAAT
*
14161526 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14161552 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14161578 C
1 C
14161579 CTAAATCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14162451 original size:26 final size:26
Alignment explanation
Indices: 14162422--14162474 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14162412 CCCATCCGAT
*
14162422 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14162448 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14162474 C
1 C
14162475 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14164304 original size:899 final size:893
Alignment explanation
Indices: 14160669--14165033 Score: 5970
Period size: 896 Copynumber: 4.9 Consensus size: 893
14160659 CCAATCCGAT
* *
14160669 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCCTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14160734 CAGCCAGAGGGGCAGGATGCGCAAGCCGGGGATC-GATCGGGTCCCCCTCTGCGTGCTGTCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAG-TGGGGATCAG-TCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * *
14160798 CTGCTGCTGGAACCCTCGATTCGGTCTGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCA
129 CTGCTACCGCAACCCTCG-TTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * * * *
14160863 ACTAAC-AAAATGAGCGGGCGGGCGGGCACTAC-CCCAGCCAGAGAGGCGGGATGCGCAAGTCGA
193 ACCGACGAAAGTGGGCGGGCGGGCGGGCACTACGCCGA-CCAGAGAGGCGGGATGCGCAAGCCGT
* * * *
14160926 GCATCGATAGGGTGGTAGGTGGGTTTGGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTCT
257 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
14160991 ATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCGTGTGAGGTTTCATGGCAAGACGAATC
322 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTC
* **
14161056 GTTTTCTATTTTTCACGA-TTTTAGAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAA
387 GTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
* * * ** ** * *
14161120 GAAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGTATTTTTGTTGTTATTAAAAAAAAAATC
452 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAATTC
*
14161185 ACCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
517 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
14161250 TCTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCT-A
582 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
14161314 ATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACAGCATGT
647 A-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGT
* *
14161379 GTG-AGCACCCCCATGGCCCCCCCGATTGTCGGAACCCCAATACCGTCGGTCAGG-T-T----C-
711 GCGCA-CACCCCC-TGGCCCCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * *
14161436 -T-C-C-GGCGATGGTGCCCCGTCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
774 ATGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATG
* * * * * *
14161497 TGCTACCGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAAGTCCGTATG
839 TGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14161552 CTTAGGCTGGGAATGAACTCCGTATGCCTAAATCAACCCACAAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14161617 CGGCCAGAGGGGCGGAATGCGTAAGTCGGAGATCAGTCGAGTCCCACTCTACGTGCTACTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGT-GGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14161682 TGCTGCCGCAACCCTCGGTCTGGTCTAATCTCAGACTGGGAATTAACTCCGTATGCCTAAGCCAA
130 TGCTACCGCAACCCTCGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14161747 CCGATGAAATGATCGGGCGGGCGGGCGGGC-CTTACGTC-AGCCAGATAGGCGAGATGTGCAAGC
194 CCGACGAAA-G-T-GGGCGGGCGGGCGGGCAC-TACGCCGA-CCAGAGAGGCGGGATGCGCAAGC
* * *
14161810 CGTGGATCGATAGGTTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGCGTGCCAATGCCATT
254 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
14161875 TTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGGCTTCGTGTGAAGTTTCATGGCAAGACGA
319 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGA
* * *
14161940 CTCGTTTTCTATTTTTCACAATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCT
384 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
* * * *
14162005 GAATGAGTTTTGGCCCCAAACTTAGTAGACGTGGTCCTTGTATTTTTATT-GCGTTGCACAAAAA
449 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGC-ATGCACAAAAA
* * *
14162069 ATTCAGCTAAAAACTCGAAGTTTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAG
513 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
14162134 ACACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
578 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
14162199 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCA
643 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCA
* *** * * *
14162264 TGTGCGCACACCCCCTGG-CCCCCCGATCGTCGGAACCCCAAAATCGCCGGTCAGGTTCTCTGGT
708 TGTGCGCACACCCCCTGGCCCCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
** * *
14162328 GATGCTCTGGCGATGGTGCCCCGATGAAG-AAAATGTGGCACCAGCACATGCCTGAGCCCAGCAT
773 GATGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCAT
* * *
14162392 GTGCTG-TCGTAACCCTCAGTCCCATCCGATCTTAGACTGGGAATGAACTCCGTATG
838 GTGCTGCT-GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14162448 CTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCATGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * *
14162513 CAACCAGATGGACGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGT-GGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14162578 TGCAACCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAA
130 TGCTACCGCAACCCTC-GTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
14162643 CCGACGAAACGAGTGGGCGGGCGAGCGGCCAATATGCCGGCCAGAGAGGCGGGAAGCGAAAGCCG
194 CCGACG-AA--AGTGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCG
* *
14162708 TGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT-AAGTGCCAATGCCATTT
256 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA-TGCCAATGCCATTT
* **
14162772 TTATGGCTTGTAAATTCATACAATTGTGTCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGAC
320 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGAC
* * *
14162837 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTTAAATTTTTTCGA
385 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* * * * *
14162902 AAGGCA-TTTTGGCCCCAAACTTGGTGGACATTATCCATGTATTTTTTTTGGCATGCACAAAAAA
450 AAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAA
* *
14162966 TTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTTCAGA
514 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
14163031 CACTTTAATGGCTACTGGTAGCAAACCTGTAACATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
579 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
14163096 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCTAAGCACCAGCACCCATCGCACATCAT
644 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCAT
* * * * * *
14163161 GTGCGCACACCCCCCGGCCCCCCCCGATCGTCGGAACCCCAACGCCATCAGTCA-GTTCTCCAGC
709 GTGCGCACACCCCCTGG-CCCCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
* * * * * *
14163225 GATGCTCCGACGATGGTGACTCAGTGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCAT
773 GATGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCAT
* ** *
14163290 GTGCTGCAGCAACCCTCGGTCCGATCTTATCTTAGACTGGGAATGAACTCTGTATG
838 GTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14163346 CTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
14163411 CGGCCAGAGGGGCGGGATGCGCAAGATGGGGATCTGTCGCGTCCCCCTCTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAG-TGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * *
14163476 TGCTACCGCAACCCTCAGTTCGGTCTGATCTTAGACTGTGAATGAATTCCGTATGCCAAAGCCAA
130 TGCTACCGCAACCCTC-GTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14163541 CCGACGAAACGTGCGGGCGGGCGGGCGGGCACTACACCGACTAGAGAGGCGGGACGCGCAAGCCG
194 CCGACGAAA-GT--GGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCG
14163606 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
256 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* *
14163671 TATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTCGTGTGAACTTTCATGGCAAGACGACT
321 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACT
* * * * *
14163736 CGTTTTCTATTTTTCACGATTTTCAAAACTGTTTGCTGTTCGGGATTGTTTAAAATTTTTTCGGA
386 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
** * * *
14163801 AGGAGTTTTATCCCCAAACCTGGTAGACGTGATCCTTTTATTTTTATTGGCATGCATAAAAACAT
451 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAA-AT
* **
14163866 TCAACTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
515 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
14163931 ACTCTAATGGCTACTGGCAGCAAACCTGTAAAAACTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
580 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
14163996 CGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATG
645 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATG
* *
14164061 TGCGCACACCCCCTGGCCCCCCCGATTG-CAAGAACCCCAATGCCGTTGGTCAGGTTCTCCGGCG
710 TGCGCACACCCCCTGGCCCCCCCGATTGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * * *
14164125 ATGCTCAGGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAACTCATGTCCAAGCCCAGCATG
774 ATGCTCTGGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATG
* * * ** * *
14164190 TGCTGCTGCGACCCTCGGTCCGGTCTGATCTTAGACAAGGAATGAGCTCCATATG
839 TGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14164245 CTTAGACTGGGAATGAAGTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCTGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14164310 CGGCCAAAGGGGCGGGATGCGCAAGCTAGGGATCAGTCGGGTCCCCCTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAG-TGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
14164375 TGCTACTGCAACCCTTGGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAAGCCAT
130 TGCTACCGCAACCCTCGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
14164440 CCGACGAAA-TAAGCAGGCGGGCGGGCACTACGTCGGCCAGAGAGGCGGGATGCGCAAGCTGTGG
194 CCGACGAAAGTGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGG
* *
14164504 ATCGATAGGGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTCTACATGCCAATGCCATTTTTAT
259 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
14164569 GGCTTGTAAATTCATA-AATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGT
324 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGT
* * * ** *
14164633 TCTCTATTTTTCATGATTTTTTAAACTTTTTGTGGTTAGGGATTTTTTAAAATTTTTTCGGAAGG
389 TTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
** *
14164698 AGTTTTGGCCCCAAACTTACTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
454 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCAC-AAAAAATTCA
* * * *
14164763 GCTAAAAACTCAAAGTGTACAAGATTTT-TGACCGTTTCAAAAAAGTGTCACCATTTTAGACACT
518 GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * *
14164827 TTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTACTCGA
583 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
14164892 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGTACCCATCGCACATCATGTGC
648 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGC
* * * *
14164957 GCATATCCCCC-CGCCCCCCCGATCT-TCAGAACCCCAATGCCG-CTGGTCAGGTTCTCCGGTGA
713 GCACA-CCCCCTGGCCCCCCCGAT-TGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGCGA
14165019 TGCTCTGGCGATGGT
775 TGCTCTGGCGATGGT
14165034 CACCATTTCA
Statistics
Matches: 3078, Mismatches: 351, Indels: 96
0.87 0.10 0.03
Matches are distributed among these distances:
882 2 0.00
883 168 0.05
884 4 0.00
886 35 0.01
887 182 0.06
888 287 0.09
889 3 0.00
893 216 0.07
894 186 0.06
895 131 0.04
896 719 0.23
897 62 0.02
898 590 0.19
899 493 0.16
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGTGGGGATCAGTCGGGTCCCCCTCTGCGTGCTGCCGATCCT
GCTACCGCAACCCTCGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAAGTGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGGCGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAATTCAGCT
AAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCTGGCCCCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCT
GGCGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCT
GCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
Done.