Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 71 of 195
Found at i:14165246 original size:223 final size:223
Alignment explanation
Indices: 14164809--14165235 Score: 680
Period size: 223 Copynumber: 1.9 Consensus size: 223
14164799 TCAAAAAAGT
*
14164809 GTCACCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTCAA
1 GTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTCAA
* *
14164874 GGGGGTGTGAGTACTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGTAC
66 GGGGGTGTGAGTACTCGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGCACCAGCAC
* *
14164939 CCATCGCACATCATGTGCGCATATCCCCCCGCCCCCCCGATCTTCAGAACCCCAATGCCGCTGGT
131 CCATCGCACATCATGTGCGCACATCCCCCCGCCCCCCCGATCGTCAGAACCCCAATGCCGCTGGT
14165004 CAGGTTCTCCGGTGATGCTCTGGCGATG
196 CAGGTTCTCCGGTGATGCTCTGGCGATG
* *
14165032 GTCACCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTAT-A
1 GTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCT-TCA
*
14165096 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGCACCAGCA
65 AGGGGGTGTGAGTACTCGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGCACCAGCA
* * * * * *
14165161 CCTATCGTACATCATGTGTGCACA-CCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCTG-TC
130 CCCATCGCACATCATGTGCGCACATCCCC-CCGCCCCCCCGATCGTCAGAACCCCAATGCCGCT-
14165224 GGTCAGGTTCTC
193 GGTCAGGTTCTC
14165236 TGTCGATGCT
Statistics
Matches: 187, Mismatches: 14, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
222 5 0.03
223 181 0.97
224 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.23
Consensus pattern (223 bp):
GTCACCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCAAATGCTCTTCAA
GGGGGTGTGAGTACTCGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGCACCAGCAC
CCATCGCACATCATGTGCGCACATCCCCCCGCCCCCCCGATCGTCAGAACCCCAATGCCGCTGGT
CAGGTTCTCCGGTGATGCTCTGGCGATG
Found at i:14166271 original size:26 final size:26
Alignment explanation
Indices: 14166231--14166283 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14166221 CTGGCCTGAT
14166231 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14166257 CTTAGACTGGTAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14166283 C
1 C
14166284 CTACGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14167154 original size:895 final size:895
Alignment explanation
Indices: 14165036--14172681 Score: 5430
Period size: 896 Copynumber: 8.4 Consensus size: 895
14165026 GCGATGGTCA
* *
14165036 CCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTATAAGGGG
1 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* *
14165101 GTGTGAGTTCTCGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCTAT
66 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
* * * *
14165166 CGTACATCATGTGTGCACACCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCTGTCGGTCAGG
131 CGCACATCATGTGTGAAC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * ** **
14165231 TTCTCTGTCGATGCTCCAACGATGATGCCCCGACGAAGAAAAATATGGCACCAGCTTATGCCCGA
195 TTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * * * * * *
14165296 GGCCAGTATGTGCTCCCATAATCCTCAGTCCGGTCCGGTCTTAGGCTAGGAATGAACTCCATATG
260 GCCCAGCATGTGCTGCCACAACCCTCGGT-CGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * * *
14165361 CTTAGACTGGGAATGTACT-TCGTATGCCTAAGTCAACACATGAAACGAGCGTGCGGACACTCAG
324 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* ** * *
14165425 CCGGCCAGAGGGGCTGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCTCTGTGTGTTGCCGATC
388 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAATC
* * * *
14165489 CTACTGTCACAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
453 CTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* * * *
14165554 ACCGACGAAACGAGGGGCGGGCGGGCGGCCACTACGCCAGTCAGAGAGGCGGGATGCGCAAGCCG
518 ACCGACGAAACGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATACGCAAGCCG
*
14165619 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGGCAATGCCATTTT
583 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* *
14165684 GATGGCTTGTAAATTCATACAATGGTCCCTTAAAG-CTTCATGTAAAGTTTCATGGCAAGACGAC
648 TATGGCTTGTAAATTCATACAATGGTCCCTT-AAGCCTTCGTGTAAAGTTTCATGGCAAGACGAC
* * *
14165748 TCGTTTTCTATTTTTCATGATTGTTGAAAGTTTTTACGGTAT-GGGATTTTTTAAAATTTTTTCG
712 T-GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGAT-TCGGGATTTTTTAAAATTTTTTCG
* *
14165812 GATGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAC
775 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAC
* *
14165875 AATTCAGCTAAAAACTGGAAGTGTACAAGATTTTGTGACCATTTGAAAAATGTGTCC
840 -ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
14165932 CTATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGG
1 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * * *
14165996 GTTTGAGTTCTCGAGGTTTGATGAGAGATAAGGGGCCAATATAAGGGCCAAGTACCCGCACCCAT
66 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
* *
14166061 CGCACATCATGTGTGAACCCCTCCCCGGCCCCCTCGATCGTCGAAACCCCAATGCCGTCGGTCAG
131 CGCACATCATGTGTGAA-CCC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* * ** * * *
14166126 GTTCTCCGGCGATGCTCCGGTGATGGTGCCCTGACGAAGAAAAATGCGGCACTAGCACATGCCTG
194 GTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * *
14166191 AGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGG-CCTGATCTTAGACTGGGAATGAACTCCGTA
259 AGCCCAGCATGTGCTGCCACAACCCTCGGTC-GGTCC-GATCTTAGACTGGGAATGAACTCCATA
* *
14166255 TGCTTAGACTGGTAATGAACTCTGTATGCCTACGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
322 TGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * *
14166320 GCCGGCCAGAGGGGCGGGATGTGCAAGCCAGGGATCGGTCGGGTCCCCCTCTACGT-CTGCCAAT
387 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAAT
** * *
14166384 CCTGCTGTCTTAACCATCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCC
452 CCTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* * * * * *
14166449 AACTGATGAAATGAGAGGGCGGCCGAGCGGGCACTACGCTGGCCAGAGAGGCGGGATACGCAAGC
517 AACCGACGAAACGAG-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATACGCAAGC
* * *
14166514 CGTGGATCGATA-GGTGGTAGGTGGGGTTAGTCACATCTTCATATTTCTACATGCCAATACCATT
581 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* * *
14166578 TTTATGGCCTGTAAATTCATACAATGGTCCATTAAGCCTTCGTGTAAAGTTTCATGGCAAGACGG
646 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTAAAGTTTCATGGCAAGACGA
14166643 CT-TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCGG
711 CTGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCGG
* *
14166707 TAA-GAG-TTTGAGCCCCAAACTTGGTAGACGTGATCCTTGTCTTTTTTTTGGCATGC-TCAAAA
776 -AAGGAGTTTTG-GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT-AAAA
* *
14166769 ACATTGAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
838 ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * *
14166827 CCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGTTGTTTAAGGGG
1 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
14166892 GTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCGAGCACCAGCACACAT
66 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
* * ** * *
14166957 CGTACATCATGTGTGAACACCCCCTGGCCCCCCCGATTATCGGAGCCCCAATGCCGTCGATCAGG
131 CGCACATCATGTGTGAAC-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * *
14167022 TTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCATCAGCACATGCCCAA
195 TTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * *
14167087 GCCCAACATTTGCTGCCACAACCCTCGGTTCGGTCTGATCTGAGACTGGGAATGAACTCCATATG
260 GCCCAGCATGTGCTGCCACAACCCTCGG-TCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * * ** *
14167152 CTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCGCGAAATGAGCGTGCAGGCATTCAA
324 CTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* *
14167216 CCGGCCAGAGGGGTGGGATACGCAAGCCGGGGATCGATCGGGTCCCCC-CT---T--T----A-C
388 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAATC
* * * * * * * * * * *
14167270 GTGCAGTCACAACCCTTGGTCTGGTCCGATCTTAGACTAGGAATTAATTTCGTGTGCCGAAGCCA
453 CTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* * * * *
14167335 ACCGACGAAACGAGCGGGTGGGCGGGCGGGCACTACGCCGGCCTGAGAGGTGGGACATGCAAGCC
518 ACCGACGAAACGAG-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATACGCAAGCC
* * *
14167400 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCATAGTTCTGCATGCCAATGCCATTT
582 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* * *
14167465 TTTTGGCTTGTAAATTCTTACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGAC
647 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTAAAGTTTCATGGCAAGACGAC
** * *
14167530 TTGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCCG-TTCGAGATTTTTTAAAATTCTTTT-
712 -TGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGATTCGGGATTTTTTAAAATT-TTTTC
* *
14167593 GGAAGGAGTTTTGTCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCATAAAAA
774 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAA
* * *
14167658 CATTCAGCTAAAAGCTCGAAGTGTACAAGATTTTGTGACCACTTGAAAAAAGTGCCC
839 CATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
14167715 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGG
1 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGG
14167780 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCA
65 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCA
* * *
14167845 TCGCACATCATGTGTGAA-CCCCCCAG-CCCCCCGATAGCCGGAACCCCAATGCCGTCGGTCAGG
130 TCGCACATCATGTGTGAACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* *
14167908 TTCTC-CAGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGTACCAGCACATGCCCG
195 TTCTCTGA-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * *
14167972 AGCCCAGCATGTGCTACCGCAA-CC-C--TCGGTCCGGTC-----C---G-AT---CT---TA-G
259 AGCCCAGCATGTGCTGCCACAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
14168017 ---AG--TGGGAATGAACTCTGTATCCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTCAGT
324 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14168077 CGGCTAGAGGGGTGGGATACACAAGCTC-GGGATCGACCGGG-CCCCCTCTACGTGCTGCCAATC
389 CGGCCAGAGGGGCGGGATGCGCAAGC-CGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAATC
* * * * * *
14168140 CTGCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACAGGGAATGAACTCCCTACGCCTAAGTCA
453 CTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCA
* *
14168205 ACCGACGAAACGAGTGGGCGGGCGGGCTGGCACTACGCCGGCCAGAGAGGCGGGATGCGCAAGCC
518 ACCGACGAAACGAG-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATACGCAAGCC
* ***
14168270 GTGGATCTATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTT
582 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
*
14168335 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGAC
647 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTAAAGTTTCATGGCAAGACGAC
* * *
14168400 TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGTGATTTTTTAAAATTATTTCAG
712 T-GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCGG
* * *
14168465 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCCTGTATTTTTGTTGGCTTGCATAAAAAAA
776 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAACA
* * * *
14168530 TTCAGCTAAAAAATCGAAGTTTACAAGATTTTGTGACCATTTGAGAAAAGTGTCT
841 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
14168585 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
1 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
14168650 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGAGCCAAGCACCAGCACCCAT
66 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
* * * * * *
14168715 CGCATATCAAGTGCGCAGACCCCCCCGACCCCCCAGATCGTCGGAACCCCAATG-C-TCCAGTCA
131 CGCACATCATGTGTG-A-ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGT-CGGTCA
** * *
14168778 GG---T-T--C--T-CT--GACGATGGTGCCCCGGTGAACAAAAATGCTGCACCAGCACATGCCC
193 GGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * *
14168832 GAGCCCAACACGTGCTGCC-CTAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAATTCCAT
258 GAGCCCAGCATGTGCTGCCAC-AACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCAT
* * * *
14168896 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAACGTGCGGGAGCTC
321 ATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * ** * * * *
14168961 AGTCGGCTAGAGGGGCGGGATGCATAAGCCGGGGATCG-GCTGGGTCCCCCTCTGCGTGCTACCG
386 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCCCCCTCTACGTGCTGCCA
* * ** * * * * * * *
14169025 ATCCTGCTG-CTGCAACTCTCAATCTGGTCTGATCATATACTGGGAATGAACTTCGTATGCTTAA
450 ATCCTGCTGTC-ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAA
* * * * * * *
14169089 GCCAATCGACGAAACGAGTGGGTGGGTGGACGGGTACTAAGCCGGCCAGAGAGGCGGGATGCGCA
514 GCCAACCGACGAAACGAG-GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATACGCA
** *** * ** * **** ** **
14169154 AGCCAG-GGATC-AGCCGGCCAGAAGG-GCGGGAT-GCGCA-AGC--CAGGGATCGGC-TG-GGA
578 AGCC-GTGGATCGA-TAGGGTGGTAGGTG-GGTTTAG-GCACATCTTCATATTTCTACATGCCAA
** * * *** * ** * ** ** *
14169210 CCCCCTCTGCGT-GCTACCGTAACCCTCGAT-C--TGGTCCGATCTTAA-ACTGGGAATGAAGTC
639 TGCCATTTTTATGGCT--TGTAA-ATTC-ATACAATGGTCC---CTTAAGCCTTCGTGTAAAGT-
* * *** * **** ***** ** ****
14169270 GAT-ATGCCTAAGCCAACGAC-G-AAACGAGCGGGT-A-GACGGGCGGGCACTACGCCGACCAGA
696 -TTCATGGC-AAG---ACGACTGTTTTCTA-TTTTTCATGA-TTTTTGAAACT--TTTTA-C---
** **** * * *** * * **
14169330 GAGGCGGGA-TCCGCAAGCAGTGGATC-GATAGGGTGGTAGGTGGGTTTAGG-CAC-ATCTTCAT
748 GATTCGGGATTTTTTAA-AATTTTTTCGGA-A----GG-A-GT---TTT-GGCCCCAAACTTGGT
** * * * * * ** * ** *
14169391 ATTTCTATG-TGCCAATGCCATTTTT-ATGGCTTG--TAAATTCATACAATGGTCTCTTAAGC-C
801 A-GAC-GTGAT-CC-TTG-TATTTTTGTTGGCATGCATAAAAACATTC-A--G-CT-AAAAACTC
*** * ** * * *** *** * * *
14169451 TTCGTGT-GAAG-TTTCATGGCAAGACG-ACTCATTTTCT
856 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*** * * ** * ** *** * * * *
14169488 ATTTTTCATA-ATTTTTGAAACTTTCTGC-GGTTC-GGGATTTTTTAAAATCTTTTCGGAAGGAG
1 CCATTTCAGACA-CTTT--AA-TGGCTACTGG--CAGCAAACCTGTAAAATC---TC-AAATG-C
*** * ** *** * ****
14169550 T-TTT--GGCCCCAAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCA
55 TCTTTAAGG------GGGTG-T-GA-GT--T-CTCG-A---GGTTT-G-ATG-A-GGGATAGGGG
* * ** *** * * * * * **
14169612 GCTAAAAACTCGAAGTGTACAAG-ATTTTGTGA-CCATTTGAAAAAAGTGTTCCCATTTCAGACA
100 GC-CAATA-T--AAG-GGCCAAGCA-CCAG-CACCCA-TCG--CACA----T--CATGTGTGA-A
****** *** * * * *** * * ** **
14169675 CTTTAATGGCTACTCGTAGCAAACCTATAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCT-
148 CCCCCCCGGC--C-C-CCCCGATCGT-CGGAA-CCCCAATGC-C-----GTCGGTCAG-GTTCTC
** * * ** * * * * * *
14169739 TGA-G--GCT-TAATGAGGGATAG-CGGGGCCAA-TATAA-G-GGC-CAAGCACCA-GCACCCAT
200 TGACGATGCTCCGACGATGG-T-GCCCCGACGAAGAAAAATGCGGCACCAGCA-CATGC-CCGA-
* * * * * *** ** *** * *
14169794 CGCACATCATGTGC-G-CACACCCCCCGGCCCACCCGATCGTCGGAAC-CCCAATG-CCACCAGT
260 -GCCCAGCATGTGCTGCCACAACCCTCGGTCGGTCCGATC-TTAG-ACTGGGAATGAACTCCA-T
* ** * * *** * * * * ** ** *
14169855 CAGGTTCTCCGGCGATGGTGCCCCAGTGAAGAAAAATG-AGGCACCAGGACATGCC-CGAGCCCA
321 -A--TGCTTAGAC--TGG-G----A---ATGAACTCTGTATGC-CTAAGTCAACCCACGAAACGA
** * * * * * *
14169918 GCATGTGCTACCGCAACCCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
372 GC--GTG----CG---GGC--GCTC-AG-CCG-GC-CAGA--GGG---G----CGGGATG-C---
* ** * * * * * * * *
14169983 GTCAACCCATGAAACTAGCGTG-CGGGCGCTCAGTCGGCCAGAGGAGCGAGATGCGCAAGCCGAG
409 G-CAAGCCGGGGATCGATCGGGTC---C-C-C---C--TC----TA-C--G-T--GC-TGCC-A-
* * * * * * * * **
14170047 GAT-CTGTCGGGTCCCCATCTACGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCT-GGTCTGA
450 -ATCCTG-C-TGT---CA-CAAC---C-CTCGGTCC-GGT-CCG--A-TCTTAGACTGGGAATGA
* ** * ** * * *** * ****
14170110 TCTTAGATTAGGAATGAA-CTTCGTATACCGAAGCCAACTGACGAAACGAGCGGGCGGG-TGGGC
499 AC-TCCA-TATGCCT-AAGC--C--A-ACCGACG-AAAC-GA-GGGGCGGGCGGGCGGGCACTAC
* * ** ** ** *
14170173 GGACGTCCA-CTA--CGTCAGCCAG-AGAGACG-GGATGCGCA-AGCCGTGGATCGATAGGGTGG
553 -GCCGGCCAGAGAGGCGGGATAC-GCA-AGCCGTGGAT-CG-ATA-----GG---------GTGG
*
14170232 TAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
599 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* ** *
14170297 ATACCATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
664 ATACAATGGTCCCTTAAGCCTTCGTGTAAAGTTTCATGGCAAGACGACT-GTTTTCTATTTTTCA
14170362 TGATTTTTGAAACTTTTTACGGTTTGGGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAA
728 TGATTTTTGAAACTTTTTAC--------------G--A----TT-C-G---G-GATTTTTTAAAA
* * * *
14170427 TTTTTTCGGAAGGACTTTTGGCCCCAAGCTTGGTAGTCGTGATCCTAGTATTTTTGTTGGCATGC
767 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
* * *
14170492 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTGAAGAAAA-TGTCC
832 ATAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA-AAAAGTGTCC
* *
14170556 CCATTTGAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
1 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
14170621 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAAT
66 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
* * * * *
14170686 CGCACATCATGTGTGCACACCCCCCCCGGCCCCCCTGATCGTCGAAACCTCAATACCGTTGGTCA
131 CGCACATCATGTGTG-A-A-CCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCA
** ** * * *
14170751 GGTTCTCTGGTGATGCTCCGATTATGGTGCCCCGATGAAGAAAAATACGGCACCAGCATATGCCC
193 GGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
** * *
14170816 GAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTA
258 GAGCCCAGCATGTGCTGCCACAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCATA
** * * *
14170881 TGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCGCTCA
322 TGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
** ** * ** * * * * *
14170946 GCCATCTTGAGGGGCAGGATGTACAAGCCGAGGATCGACCGGCTCCCCCTCTGCGTGCTGCCGAT
387 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAAT
* * * **
14171011 CCTACTG-CTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGC
452 CCTGCTGTC-ACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGC
* * *
14171075 CAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTC-GCCTAGAGAGACGGGATGCGCAA
516 CAACCGACGAAACGAG-GGGCGGGCGGGCGGGCACTACGCCGGCC-AGAGAGGCGGGATACGCAA
* *
14171139 GCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
579 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
** * * *
14171204 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCCTGGCAAGAC
644 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTAAAGTTTCATGGCAAGAC
* * *
14171269 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTT
709 GACT-GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTT
* ** * *
14171334 CGAAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTTGGCATGCACAAAA
773 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
14171399 ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
838 ACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* * * * *
14171457 CCATTTCAGACACTTTAACGGCTACTGGCAGCAAGCCTGTAACATATCAAATGCTGTTTAAGGGG
1 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * * * *
14171522 GTGTGAGTTCTTGACGTTTGATGAGGGATAGAGGTCCAATATAAGTGCCAAGTACCAGCACCCAT
66 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
* *
14171587 CGCACATCATGTGCGCACACCCCCCC-G-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAG
131 CGCACATCATGTGTG-A-ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* * * *
14171650 GTTCTCTAACGATACTCC-AGTGATGGTGCCCCGACGAAGAGAAATGCGGCACCAGCACATGCCC
194 GTTCTCTGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * ** *
14171714 AAGCCCAGCATGTGCTGCCACAACCCTCGGTTCGATCTAATCTTAGACTGGGAATGAACTCCGTA
258 GAGCCCAGCATGTGCTGCCACAACCCTCGG-TCGGTCCGATCTTAGACTGGGAATGAACTCCATA
* * * * * *
14171779 TGCTTAGACTAGGAATAAACTCCGTATGCCTAAGTCAGCCTACGAAACGAGCGTGCGGGAGCTCA
322 TGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * ** ** * * *
14171844 ACCGACCAGAGGGGCGGTATGCACAAGTAGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGAT
387 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAAT
** * * * * * *
14171909 TTTGCTGTCGCAACCCTCAGTCTGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCC
452 CCTGCTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCC
* * * * *
14171974 AACCGACAAAACGAGCGGGCAGGTGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGT
517 AACCGACGAAACGAG-GGGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATACGC
* * * *
14172039 AAGCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTTTGCATTCCAATGC
577 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* * ** * *
14172104 CTTTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTCCATGGCAAG
642 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTAAAGTTTCATGGCAAG
*
14172169 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTAC-AGTTCGGGATTTTTTAAAATTT
707 ACGACT-GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGA-TTCGGGATTTTTTAAAATTT
* * * *
14172233 TTTCGAAAGAATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
770 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATA
*
14172298 AAAA-ACTTCAGCTAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
835 AAAACA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
14172359 CCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-----TAAGGGG
1 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * *
14172419 GTGTGAGTTCTCGAGGTTTTATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCAT
66 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
* * * *
14172484 CGCACATCATGTGCGTACACCCACCCAGCCCCCCCGATCGTCGGAACCACAATGCCGTCGGTCAG
131 CGCACATCATGTGTG-A-ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAG
* * * ** *
14172549 GTTCTCCGACGTTGCTCCGGCGATGGTGCCCCGGTGGAAGAAAAATACGGCACCAGCACATGCCC
194 GTTCTCTGACGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * *
14172614 AAGCCCAACATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTA
258 GAGCCCAGCATGTGCTGCCACAACCCTCGGTC-GGTCCGATCTTAGACTGGGAATGAACTCCATA
14172679 TGC
322 TGC
14172682 CTAAGCCAAC
Statistics
Matches: 5257, Mismatches: 1057, Indels: 868
0.73 0.15 0.12
Matches are distributed among these distances:
859 5 0.00
860 86 0.02
861 61 0.01
862 4 0.00
863 4 0.00
864 1 0.00
865 4 0.00
866 10 0.00
869 92 0.02
870 448 0.09
871 3 0.00
872 16 0.00
873 23 0.00
874 1 0.00
875 2 0.00
876 1 0.00
878 1 0.00
881 11 0.00
882 4 0.00
883 12 0.00
884 7 0.00
885 137 0.03
886 229 0.04
887 111 0.02
888 354 0.07
889 97 0.02
890 7 0.00
891 1 0.00
892 5 0.00
893 16 0.00
894 64 0.01
895 480 0.09
896 560 0.11
897 156 0.03
898 322 0.06
899 67 0.01
900 101 0.02
901 267 0.05
902 399 0.08
903 23 0.00
904 17 0.00
905 15 0.00
906 21 0.00
907 5 0.00
908 2 0.00
909 2 0.00
910 6 0.00
911 1 0.00
913 1 0.00
914 2 0.00
915 1 0.00
916 2 0.00
917 2 0.00
919 1 0.00
920 3 0.00
921 1 0.00
924 3 0.00
925 1 0.00
926 3 0.00
927 148 0.03
928 4 0.00
929 3 0.00
930 1 0.00
932 4 0.00
933 8 0.00
934 3 0.00
936 4 0.00
938 3 0.00
939 16 0.00
940 7 0.00
941 18 0.00
942 14 0.00
943 1 0.00
944 2 0.00
945 5 0.00
946 7 0.00
947 13 0.00
948 7 0.00
949 1 0.00
950 2 0.00
951 2 0.00
952 6 0.00
953 1 0.00
954 3 0.00
955 1 0.00
956 4 0.00
958 19 0.00
959 23 0.00
960 9 0.00
961 21 0.00
962 13 0.00
963 1 0.00
964 6 0.00
965 3 0.00
967 1 0.00
968 1 0.00
969 1 0.00
970 1 0.00
971 8 0.00
972 12 0.00
973 3 0.00
975 1 0.00
977 3 0.00
980 1 0.00
981 1 0.00
982 4 0.00
983 1 0.00
984 13 0.00
985 2 0.00
986 4 0.00
988 3 0.00
989 5 0.00
991 1 0.00
993 1 0.00
995 5 0.00
996 4 0.00
998 3 0.00
999 3 0.00
1000 11 0.00
1001 3 0.00
1002 4 0.00
1003 1 0.00
1004 2 0.00
1007 2 0.00
1009 1 0.00
1011 3 0.00
1012 11 0.00
1013 8 0.00
1014 1 0.00
1015 1 0.00
1016 1 0.00
1017 1 0.00
1018 5 0.00
1019 10 0.00
1020 6 0.00
1021 1 0.00
1022 16 0.00
1023 22 0.00
1024 11 0.00
1025 60 0.01
1026 38 0.01
1027 9 0.00
1028 10 0.00
1029 10 0.00
1030 4 0.00
1031 10 0.00
1032 14 0.00
1033 4 0.00
1034 4 0.00
1035 4 0.00
1036 14 0.00
1037 16 0.00
1038 26 0.00
1039 12 0.00
1040 2 0.00
1041 2 0.00
1042 28 0.01
1043 28 0.01
1044 10 0.00
1045 40 0.01
1046 4 0.00
1047 6 0.00
1048 4 0.00
1050 2 0.00
1051 4 0.00
1052 2 0.00
1054 4 0.00
1055 16 0.00
1056 4 0.00
1057 28 0.01
1058 30 0.01
1059 26 0.00
1060 32 0.01
1061 24 0.00
1062 28 0.01
1063 10 0.00
1064 8 0.00
1065 42 0.01
1066 28 0.01
1067 30 0.01
1068 40 0.01
1069 32 0.01
1070 12 0.00
1072 2 0.00
1073 4 0.00
1074 6 0.00
1077 2 0.00
1078 14 0.00
1079 10 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCAT
CGCACATCATGTGTGAACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGT
TCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
CCCAGCATGTGCTGCCACAACCCTCGGTCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCT
TAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCAATCCTG
CTGTCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACC
GACGAAACGAGGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGGCGGGATACGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGTAAAGTTTCATGGCAAGACGACTGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAACATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
Found at i:14168909 original size:26 final size:26
Alignment explanation
Indices: 14168873--14168925 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14168863 CTGATCCGAT
*
14168873 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14168899 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14168925 C
1 C
14168926 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14169170 original size:37 final size:37
Alignment explanation
Indices: 14169128--14169201 Score: 132
Period size: 37 Copynumber: 2.0 Consensus size: 37
14169118 ACGGGTACTA
14169128 AGCCGGCCAG-AGAGGCGGGATGCGCAAGCCAGGGATC
1 AGCCGGCCAGAAG-GGCGGGATGCGCAAGCCAGGGATC
14169165 AGCCGGCCAGAAGGGCGGGATGCGCAAGCCAGGGATC
1 AGCCGGCCAGAAGGGCGGGATGCGCAAGCCAGGGATC
14169202 GGCTGGGACC
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
37 34 0.94
38 2 0.06
ACGTcount: A:0.24, C:0.27, G:0.43, T:0.05
Consensus pattern (37 bp):
AGCCGGCCAGAAGGGCGGGATGCGCAAGCCAGGGATC
Found at i:14170432 original size:27 final size:26
Alignment explanation
Indices: 14170363--14170431 Score: 111
Period size: 26 Copynumber: 2.7 Consensus size: 26
14170353 TATTTTTCAT
*
14170363 GATTTTTGAAACTTTTTACGGTTTGG
1 GATTTTTGAAACTTTTTACGGTTTGA
14170389 GATTTTTGAAACTTTTTACGGTTTGA
1 GATTTTTGAAACTTTTTACGGTTTGA
* *
14170415 GATTTTTTAAAATTTTT
1 GATTTTTGAAACTTTTT
14170432 TCGGAAGGAC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.23, C:0.06, G:0.17, T:0.54
Consensus pattern (26 bp):
GATTTTTGAAACTTTTTACGGTTTGA
Found at i:14170908 original size:26 final size:26
Alignment explanation
Indices: 14170857--14170909 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14170847 CTGGTCCGAT
* *
14170857 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14170883 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14170909 C
1 C
14170910 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14171422 original size:901 final size:892
Alignment explanation
Indices: 14169230--14172681 Score: 4399
Period size: 902 Copynumber: 3.8 Consensus size: 892
14169220 GTGCTACCGT
* *
14169230 AACCCTC-GATCTGGTCCGATCTTA-AACTGGGAATGAAGTC-GATATGCCTAAGCCAA-CGACG
1 AACCCTCAG-TCTGGTCTGATCTTAGAA-TGGGAATGAACTCTG-TATGCCTAAGCCAACCGACG
** * * * * *
14169291 AAACGAGCGGGTAGACGGGCGGGCACTACGCCGACC-AGAGAGGCGGGATCCGCAAGCAGTGGAT
63 AAACGAGCGGGCGGGCGGGCGGGCACTACGTCG-CCTAGAGAGACGGGATGCGCAAGCCGTGGAT
14169355 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATG--TGCCAATGCCATTTTTAT
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-T-TGCATGCCAATGCCATTTTTAT
* ** *
14169418 GGCTTGTAAATTCATACAATGGTCTCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCAT
190 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCCTGGCAAGACGACTCAT
* * ** * *
14169483 TTTCTATTTTTCATAATTTTTGAAACTTTCTGCGGTTCGGGATTTTTTAAAATCTTTTCGGAAGG
254 TTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGG
* * *
14169548 AGTTTTGGCCCCAAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAG
319 ACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAG
* *
14169613 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTT
384 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTT
* * * * *
14169678 TAATGGCTACTCGTAGCAAACCTATAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAG
449 TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTAAGGGGGTGTGAGTTCTCGAG
* * *
14169743 GCTTAATGAGGGATAGCGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGC
513 GTTTGATGAGGGATAG-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * ** *
14169808 GCACACCCCCCGGCCCACCCGATCGTCGGAACCCCAATGCCACCAGTCAGGTTCTC---CG--G-
577 GCACACCCCCCCGCCC-CCCGATCGTCGGAACCACAATGCCGTCGGTCAGGTTCTCTGACGATGC
* *
14169867 --C---GATGGTGCCCC-AGTGAAGAAAAATGA-GGCACCAGGACATGCCCGAGCCCAGCATGTG
641 TCCGATGATGGTGCCCCGA-TGAAGAAAAAT-ACGGCACCAGCACATGCCCAAGCCCAGCATGTG
* *
14169925 CTACCGCAA-CC-C--T-T-G---G----T---CT--G---G---TCCG-AT-CTTAGACTGGGA
704 CTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* * ** *
14169964 ATGAACTCCGTATGCCTAAGTCAACCCATGAAACT-AGCGTGCGGGCGCTCAGTCGGCCAGAGGA
769 ATGAACTCCGTATGCCTAAGTCAACCCA-CAAAATGAGCGTGCGGGCGCTCAG-CCACCAGAGGG
* * * * * *
14170028 GCGAGATGCGCAAGCCGAGGATCTGTCGGGTCCCCATCTACGTGCTGTCGATCCTGCTACCGC
832 GCG-GATGCACAAGCCGAGGATC-GCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGC
* * * * *
14170091 AACCCTCAGTCTGGTCTGATCTTAGATTAGGAATGAACT-TCGTATACCGAAGCCAACTGACGAA
1 AACCCTCAGTCTGGTCTGATCTTAGAATGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAA
*
14170155 ACGAGCGGGCGGGTGGGCGGACGTCCACTACGTCAGCC-AGAGAGACGGGATGCGCAAGCCGTGG
65 ACGAGCGGGCGGGCGGGCGG--G--CACTACGTC-GCCTAGAGAGACGGGATGCGCAAGCCGTGG
*
14170219 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTAT
125 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTAT
* * *
14170284 GGCTTGTAAATTCATACCATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
190 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCCTGGCAAGACGACTCAT
14170349 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTGAAACTTTTTACGGTTTG
254 TTTCTATTTTTCATGATTTTTGAAACTTTTTA-----T--G------G-------TT-C-G---G
* * * *
14170414 AGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCCAAGCTTGGTAGTCGTGATCCTAGTATT
294 -GATTTTTTAAAATTTTTTCGAAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
14170479 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGTTTTTGTGACCATTTG
358 TTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* *
14170544 AAGAAAA-TGTCCCCATTTGAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAAT
422 AA-AAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
14170608 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
486 GCT-TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * *
14170673 TACCAGCACCAATCGCACATCATGTGTGCACACCCCCCCCGGCCCCCCTGATCGTCGAAACCTCA
550 TACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCC-GCCCCCC-GATCGTCGGAACCACA
* * ** *
14170738 ATACCGTTGGTCAGGTTCTCTGGTGATGCTCCGATTATGGTGCCCCGATGAAGAAAAATACGGCA
612 ATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGATGATGGTGCCCCGATGAAGAAAAATACGGCA
* * ** *
14170803 CCAGCATATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
677 CCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGG
* *
14170868 AATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGC
742 AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGC
* ** * *
14170933 GTGCAGGCGCTCAGCCATCTTGAGGGGCAGGATGTACAAGCCGAGGATCGACCGGCTCCCCCTCT
807 GTGCGGGCGCTCAGCCA-CCAGAGGGGC-GGATGCACAAGCCGAGGATCG-CCGGGTCCCCCTCT
* *
14170998 GCGTGCTGCCGATCCTACTGCTGC
869 GCGTGCTGTCGATCCTGCTGCTGC
* * *
14171022 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCAGTCTGGTCTGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
*
14171087 CGAGCGGGCGGGCGGGCGGGCACTACGTCGCCTAGAGAGACGGGATGCGCAAGCCGTGGATCAAT
66 CGAGCGGGCGGGCGGGCGGGCACTACGTCGCCTAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
14171152 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
131 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTG
14171217 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGCTTCCTGGCAAGACGACTCATTTTCTA
196 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTCCTGGCAAGACGACTCATTTTCTA
*
14171282 TTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTT
260 TTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGACTTTT
** *
14171347 CACCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTTGGCATGCACAAAAACATTCAGCTAAA
325 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAA
* *
14171412 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACG
389 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATG
* * * * *
14171477 GCTACTGGCAGCAAGCCTGTAACATATCAAATGCTGTTTAAGGGGGTGTGAGTTCTTGACGTTTG
454 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-TTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
14171542 ATGAGGGATAGAGGTCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
518 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * *
14171607 CCCCCCGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTAACGATACTCC-AGT
583 CCCCCCGCCCCCCGATCGTCGGAACCACAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGA-T
* * *
14171671 GATGGTGCCCCGACGAAGAGAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACA
647 GATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACA
* * * *
14171736 ACCCTCGGT-TCGATCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATAAACT
712 ACCCTCGGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * * *
14171800 CCGTATGCCTAAGTCAGCCTACGAAACGAGCGTGCGGGAGCTCAACCGACCAGAGGGGCGGTATG
776 CCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCC-ACCAGAGGGGCGG-ATG
** * **
14171865 CACAAGTAGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATTTTGCTG-TCGC
839 CACAAGCCGAGGATC-GCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCT-GC
* *
14171920 AACCCTCAGTCTGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAA
1 AACCCTCAGTCTGGTCTGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
* * *
14171985 CGAGCGGGCAGGTGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGTAAGCCGTGGAT
66 CGAGCGGGC----GGGCGGGCGGGCACTACGTCGCCTAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
14172050 CGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTTTGCATTCCAATGCCTTTTTTATGG
127 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGG
*
14172115 CTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTCCATGGCAAGACGACTCATTT
192 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCC-TGGCAAGACGACTCATTT
** * *
14172180 TCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTTCGAAAGAAT
256 TCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAC
14172245 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGC
321 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGC
*
14172310 TAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTT
385 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTT
14172375 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG----TAAGGGGGTGTGAGTTCTCGAGGT
450 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTAAGGGGGTGTGAGTTCTCGAGGT
* * *
14172436 TTTATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTA
515 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * *
14172501 CACCCACCCAGCCCCCCCGATCGTCGGAACCACAATGCCGTCGGTCAGGTTCTCCGACGTTGCTC
580 CACCC-CCCCG-CCCCCCGATCGTCGGAACCACAATGCCGTCGGTCAGGTTCTCTGACGATGCTC
** * *
14172566 CGGCGATGGTGCCCCGGTGGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAACATGTGCTG
643 CGATGATGGTGCCCCGAT-GAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTG
14172631 CCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
707 CCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
14172682 CTAAGCCAAC
Statistics
Matches: 2272, Mismatches: 212, Indels: 175
0.85 0.08 0.07
Matches are distributed among these distances:
861 43 0.02
862 25 0.01
864 2 0.00
865 1 0.00
866 182 0.08
867 1 0.00
873 1 0.00
879 1 0.00
886 2 0.00
887 1 0.00
888 1 0.00
891 1 0.00
892 122 0.05
893 150 0.07
894 37 0.02
897 92 0.04
898 318 0.14
899 70 0.03
900 106 0.05
901 261 0.11
902 387 0.17
904 1 0.00
905 58 0.03
906 4 0.00
907 3 0.00
909 1 0.00
910 1 0.00
911 1 0.00
914 2 0.00
918 1 0.00
920 1 0.00
921 2 0.00
922 1 0.00
923 1 0.00
926 4 0.00
927 190 0.08
929 4 0.00
930 8 0.00
931 183 0.08
932 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
AACCCTCAGTCTGGTCTGATCTTAGAATGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGCGGGCGGGCACTACGTCGCCTAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCTGGCAAGACGACTCATTTTCTAT
TTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGACTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAA
CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
CCCGCCCCCCGATCGTCGGAACCACAATGCCGTCGGTCAGGTTCTCTGACGATGCTCCGATGATG
GTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCC
TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCACCAGAGGGGCGGATGCACAAGC
CGAGGATCGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCTGC
Found at i:14171793 original size:26 final size:26
Alignment explanation
Indices: 14171755--14171807 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14171745 TCGATCTAAT
* *
14171755 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
14171781 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCGTATG
14171807 C
1 C
14171808 CTAAGTCAGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCGTATG
Found at i:14173637 original size:715 final size:713
Alignment explanation
Indices: 14171911--14177821 Score: 4119
Period size: 714 Copynumber: 8.1 Consensus size: 713
14171901 CTGTCGATTT
* * *
14171911 TGCTGTCGCAACCCTCAGTCTGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14171976 CCGACAAAACGAGCGGGCAGGTGGGCGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGTAA
66 CCGACGAAACGAGC-GGC----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * *
14172041 GCCGTGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTTTGCATTCCAATGCCT
126 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGCCA
* *
14172106 TTTTTATGGCTTGTAAATTCATACAATGGTCCGTTAAGCCTTCACGTGAAGTTCCATGGCAAGAC
191 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * **
14172171 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCGGGATTTTTTAAAATTTTTT
256 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTT
* *
14172236 CGAAAGAATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
321 CGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
14172301 AACTTCAGCTAAAACCTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
386 AA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
14172366 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG-----TAAGGGGGTGTGAG
450 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14172426 TTCTCGAGGTTTTATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
515 TTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
14172491 CATGTGCGTACACCCACCC-AGCCCCCCCGATCGTCGGAACCACAATGCCG-TCGGTCAGGTTCT
580 CATGTGCGCACACCCCCCCGAG-CCCCTCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCT
** * * * ** *
14172554 CCGACGTTGCTCCGGCGATGGTGCCCCGGTGGAAGAAAAATACGGCACCAGCACATGCCCAAGCC
643 CCGGTGATGCTCCGACGATGGTGCCCCGAT-GAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
*
14172619 CAACATG
707 CAGCATG
*
14172626 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14172691 CCGACGAAATGAGCGGGCGGACGGGCGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGTAAG
66 CCGACGAAACGAGC-GGCGG--GCG-GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
14172756 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAAGCCAC
127 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGCCAT
*
14172821 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTCCATGGCAAGACG
192 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
14172886 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC
257 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTC
** *
14172951 GAAAGGAGTTTTCACCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTTGGCATGCACAAAAA
322 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
14173016 CATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAA
387 -ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAA
*
14173081 GACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
451 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14173146 TCTCGAGGTTTGATAAGGGATAGGTGGCCAATATAAGGGCCGAGTACCAGCACCCATCACACATC
516 TCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
*
14173211 ATGTGCGCACACCCCCCCGAGCCCCTCGATCGTCGGAACCTCAATGCCGCTGGTCAGGTTCTCCG
581 ATGTGCGCACACCCCCCCGAGCCCCTCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCG
* *
14173276 GTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGC
646 GTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGC
*
14173341 ATT
711 ATG
* * *
14173344 TGCTGCTGCAACCCTTGGTCTGGTCTGATCTTAGAGTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14173409 CCGACGAAACGAGCTGGCGGGCGAGCGGGCACTACGCCGGCCAGAGGGACGGGATGCGCAAGCCA
66 CCGACGAAACGAGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
* *
14173474 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAAGCCACTTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGCCATTTT
*
14173539 TATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
195 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
14173604 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCAGGATTTTTCAAAATTTTTTCGGA
260 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAA
* ** * * *
14173669 AGGATTTTTTTCCCCAAACTTGGTAGACATGGTCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
325 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAT
*
14173734 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGAC
* * * *
14173799 ACTTTAACGGGTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * *
14173864 CGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACTAGCACCCATCGTACATCACG
519 CGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
** *
14173929 TGCGCACA-CCCCCCG-GCCCTCTCGATCACCGGAACCCCAATGCCG-TCGGTCAGGTTCTCCGA
584 TGCGCACACCCCCCCGAGCCC-CTCGATCGTCGGAACCCCAATGCCGCT-GGTCAGGTTCTCCGG
* **
14173991 TGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCA
647 TGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCA
14174056 TG
712 TG
** * * * *
14174058 TGCCACCGCAACCCTCAGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
14174123 CCCACGAAACGA---GCGTGCGGGC--GCTC-A-GCCGGCCAGAGGGGCTGGATGCGCAAGCTGA
66 CCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC-CA
** ****** ** * * * ** *** *
14174181 -GGATCGACCGGGTCCCCCTCTACGTGCT-GCCGATCCTGCTGTCGGAACCCT-CA-GTCC-AAT
130 TGGATCGATAGGGT-GGTAGGTGGGT-TTAGGC-A-CAT-CT-TCATATTTCTGCATG-CCAAAG
* * ** ** * ** **
14174241 CCGA-TCTTA-GAC-TGGGAATGAACTCCATAT-G--CC-TAAGCCAACA-GATGAAAAG-AGC-
188 CC-ATTTTTATGGCTTGTAAATTCA-TACA-ATGGTCCCTTAAGCCTTCACG-TG--AAGTTTCA
* * * * ** * ***** ** ** * * **
14174296 GGGC-GGGC-ACTACGCTGGCCA-GAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAG
247 TGGCAAGACGACT-CGTTTTCTATTTTTCACGATTTTTG-AAACT-T---T--TTA---TGGTTC
* * * * * * * *** *
14174358 GTGGGTTTAGGCACATCTTCACATTTCTGCGTGCGAATGCCATTTTTATGGCTTGTAAA-TTCGT
301 G-GGATTT-------T-TTAAAATTT-T---TTCGAAAG-GA-GTTT-TGGC-CCCAAACTTGGT
* * * * ** * ** ***
14174422 ACA-ATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCAT
349 AGACGTGAT-CCTT---G--T-A--T---TTTTGTTGGCATG-C-AC-------AAAAAATTCA-
* * ** * * * * ** ** *
14174486 GATTTTTAAAACTTTTTACG-GTTCGAGATTTT-TCAAAATTTTTTCG-AAAGGGTTTTTGGCCC
392 G---CTAAAAAC--TCGAAGTGTACAAGATTTTGTGACCA---TTT-GAAAAAAG----TGTCCC
* * * * * ** ** *
14174548 CAAACTTGGT-AGACGTGATCCTTGTATTTTTGTTGTCATGCACAAAAAAATTAGCTAAAAACTC
444 C--A-TT--TAAGAC---A--CTT-TA--ATGGCT-AC-TG-GCAGCAAACCT-G-TAAAATCTC
* * ** **** * * * * *
14174612 GAA-G-TGTACAAGATTTTGTGA---CT--A--TTTGA--A--AAAAGAGT-CCCCATTTAA--G
491 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG-GTGGCCAATATAAGGG
* ** *** ** * * *** * ** * * ** **
14174661 ACACTTTAATGGCTACTGA-CAGCA-AACCTGT----A-AAATCTCAAACGCTCTTTAAGGGGT-
555 CCA-AGTACCAGC-ACCCATC-GCACATCATGTGCGCACACCCCCCCGA-GCCCCTCGA-TCGTC
* *** * * * * * ** ** * **
14174718 GGTGAGTTC-TTGCGGTTTGATGAGG-GATAGGGGGCCAATATAAGGGCC-ACGTACT-G-GCAC
615 GG-AACCCCAATGCCG-CTGGTCAGGTTCTCCGGTG-----AT--GCTCCGACG-A-TGGTGC-C
* * ** * **
14174778 CC-ATCACA-CATCATGTGCGCA-CA-C-C-CGCCCCG-GCCCCCCGAT-
668 CCGATGA-AGAAAAATGTG-GCACCAGCACATG-CCCGAGCCCAGC-ATG
** * * * * ** * * ***
14174820 CACCGAACCCCAATGCCAC-CGGTCAGGTTCTCCGGTAAT-GCTCTAGCGAA-GAA--AAATATG
1 TGCTG--CCGCAA--CC-CTCGGTCTGG-TCT--GATCTTAG-ACT-GGGAATGAACTCCGTAT-
* * * * * * ** *** * *
14174880 GCAC-CAGCACATACCCGAGCCCAGCATGTGCTGCTGTAACCCTCGGTCCAGTCTGATCTTAGAT
55 GC-CTAAGC-CA-A-CCGA--CGA-AACGAGCGGC-G-GGCGGGCGG-GCA--CT-A-C---G-C
* ** ** * * ** * * * *
14174944 TGGGAATGA-ACTCCGTATGC-CTAAGCCAACCGA-CGAGACGAGCGGAAGGGCAAGCGGGCGGG
102 CGGCCA-GAGAGACGGGATGCGC-AAGCC-ATGGATC--GA-TAG-GG--TGG-TA---GGTGGG
* * *** * **** * *
14175006 CATTACGC-C-TGGCCAGAGAGATGGGATGCGC-AAGCCTTGGATCGATAGGGTGGTAGGTGGAC
154 -TTTAGGCACATCTTCATATTTCT-GCATGC-CAAAGCC----AT---T----T-TTA--TGG-C
* * * * * * * *
14175068 TTAGGCACA-TC-TTCATAT-TTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
201 TT--GTAAATTCATACA-ATGGTC--CCTT--AA-GCC---TTCA---CGTG-AAGTT--T-C-A
* * * * ***** *
14175130 TGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTTCATGATTT
247 TGG---C--AAGAC--GAC-T--CGTTT--T--CTATTTTTCACG-------------AT--TTT
**** * * * * *
14175195 TCGAAACTTTTTGCAATTCGGGATTTTTTAAATTTTTTTAGAAA-TATTTTTTGCCCCAAACTTG
283 T-GAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTG
* * * *
14175259 GTAGACGTGATCTTTTTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTA
347 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
14175324 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCA
411 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCA
* *
14175389 AACTTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGT
476 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGT
* *
14175453 GGCCAATATAAGGGCCGAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGAGCCCC
541 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAGCCCC
*
14175518 TCGATCGTCGGAACCTCAATGCCGCTGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG
606 TCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG
*
14175583 GTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
671 ATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * * * * * *
14175626 TGCTGCCACAACCCTCAGTCTAGTCCGATCTTAGACTAGGAAGGAAATCCATATGCATAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * ** *
14175691 CCGACAAAACGA---ACGGGCGGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCTT
66 CCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCAT
* * * *** *
14175753 GGATCGATAGGGTGGTAGGTGGGTTTAGGTACACCTTCATATGTCTATGTGCCAATGCCATTTTT
131 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGCCATTTTT
* * *
14175818 ATGGCTTTTAAATTCATACAATGATCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTC
196 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * * *
14175883 GTTTTCTATTTTT-TCTAATTTTGAAAACTTTTTACGGTTCCAGGATTTTTTTAAAAATTTTTTT
261 GTTTTCTATTTTTCACGATTTTTG-AAACTTTTTATGGTT-CGGGA-TTTTTT-AAAA--TTTTT
* * * * *
14175947 TCGAAAAGGCGGTTTGGCCCC-AAC-TGGTAATATGTGATTCTTGTATTTTTTGTTGGCATGCAC
320 TCG-AAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTTGTA-TTTTTGTTGGCATGCAC
* *
14176010 AAAAAACTTCAGCTAAAAACTCAAAGTGT-TAA-ATTTTGTGACCAATTTGAAAAAAGGTGTCCC
382 AAAAAA-TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC-ATTTGAAAAAA-GTGTCCC
** *
14176073 CATTTAAGACACTTT-ATGGCTACTGGC-GCAAACCTGTAAAATC-CAAACACTTTTTAA-GGGG
444 CATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * * * * *
14176134 TG-GGGTTCTTGAGGTTTGATGAGGAATAGG-GGGCTATATACGGGCCAAG-ACTAGCACCCATC
509 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * * * *
14176196 GCAC-TCATGTGTGCACA--CCCCCTATCCCCCCCGATCATCGGAACCCCAATGCCG-TCGATCA
574 GCACATCATGTGCGCACACCCCCCCGA-GCCCCTCGATCGTCGGAACCCCAATGCCGCT-GGTCA
* * * **
14176257 GGTTCTCCGGTGATGCTTCTG-CGATGGTTCCCCGACGAAGAAAAATACGGCACCAGCACATGCC
637 GGTTCTCCGGTGATGC-TCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCC
*
14176321 CGAGCCCAGAATG
701 CGAGCCCAGCATG
* *
14176334 TGCTGCCGCAACCGTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * ** *
14176399 CCGACGAAACGAGCGGGCAGGCGGGCGGGCAATA-GCCGGCTAGAGAGACGGGATAAGCAAGCCG
66 CCGACGAAACGAGC-GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCA
* *
14176463 TGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
130 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGCCATTTT
* * *
14176528 TAGGGCTTGTGAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACGACT
195 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * **
14176593 CATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAA
260 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAA
*
14176658 AGGAGTTTTGGCCCC-AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
325 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAT
* *
14176722 TCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGAC
* * * *
14176787 ACTTTAATGGCTATTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGACTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
14176852 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
519 CGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *
14176917 TGCGCACACCCCCCTC-AACCCACCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
584 TGCGCACACCCCCC-CGAGCCC-CTCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGG
* * * * ** *
14176981 CGATGCTCCGACTATAGTGCCCCGGTGAA-AAAAACTGTGGCACCAGCACATGCTAGAGCCCAGT
647 TGATGCTCCGACGATGGTGCCCCGATGAAGAAAAA-TGTGGCACCAGCACATGCCCGAGCCCAGC
*
14177045 ATT
711 ATG
* * * *
14177048 TGCTGCCGAAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAAGCCAA
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
14177113 CCGACGAAACGAGCGGGCGGACGGGTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGA----GCGG-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
14177178 GCCGTGCATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCGTGCCAATGCCA
126 GCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGCCA
* * * *
14177243 TTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTTAAGTTTCTTGGCAAGAT
191 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** **
14177308 GACTCGTTTTCTATTTATT-ATGATTTTTGAAACTTTTTGTCATTCTAGATTTTTTAAAATTTTT
256 GACTCGTTTTCTATTT-TTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTT
* * * *
14177372 TCGGAAGGAGTTTTGGCCCCCAACTTGGTAGACGTGGTCCTTGTATTTTTGTTGGCATGCATAAA
320 TCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14177437 AAA-TCAGTTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTC
385 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTA
*
14177501 GGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
450 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14177566 TTCTCGAGGTTTGATGAGGGATAAGG-GGACAATATAAGGGCCGAGTACCAGCACCCATCGCACA
515 TTCTCGAGGTTTGATGAGGGAT-AGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
14177630 TCATGTGCGCACACCACCCCCGACCCCCTCGGTCGTCGGAACCCCAATGCTGCCGATCAGGTTCT
579 TCATGTGCGCACACC-CCCCCGAGCCCCTCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCT
* **
14177695 CCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGAAGCACCAGCACATGCCCGAGCCC
643 CCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCC
14177760 AGCATG
708 AGCATG
* * * * * * * *
14177766 TGCTACCGTAAACCTTGGTCCGATCTGATCTTACACTGGAAATGAACTCCGTATGC
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
14177822 TTAGACTGGG
Statistics
Matches: 4047, Mismatches: 777, Indels: 741
0.73 0.14 0.13
Matches are distributed among these distances:
703 9 0.00
704 69 0.02
705 74 0.02
706 79 0.02
707 34 0.01
708 182 0.04
709 73 0.02
710 56 0.01
711 214 0.05
712 60 0.01
713 28 0.01
714 764 0.19
715 599 0.15
716 74 0.02
717 2 0.00
718 456 0.11
719 392 0.10
720 43 0.01
721 1 0.00
722 6 0.00
723 1 0.00
724 2 0.00
725 2 0.00
726 5 0.00
727 2 0.00
728 9 0.00
729 16 0.00
730 3 0.00
731 1 0.00
732 3 0.00
734 5 0.00
735 1 0.00
736 1 0.00
737 1 0.00
739 4 0.00
740 10 0.00
741 2 0.00
742 2 0.00
743 3 0.00
744 3 0.00
747 3 0.00
748 5 0.00
749 1 0.00
750 3 0.00
751 2 0.00
752 9 0.00
753 15 0.00
754 7 0.00
755 15 0.00
756 4 0.00
757 1 0.00
758 5 0.00
759 18 0.00
760 10 0.00
761 5 0.00
762 20 0.00
763 26 0.01
764 10 0.00
765 14 0.00
766 22 0.01
767 13 0.00
768 8 0.00
769 19 0.00
770 18 0.00
771 11 0.00
772 1 0.00
773 5 0.00
774 20 0.00
775 2 0.00
776 12 0.00
777 4 0.00
778 3 0.00
779 6 0.00
780 16 0.00
781 1 0.00
782 1 0.00
784 1 0.00
785 1 0.00
786 3 0.00
788 2 0.00
789 4 0.00
790 1 0.00
791 11 0.00
792 17 0.00
793 15 0.00
794 11 0.00
795 5 0.00
796 9 0.00
797 7 0.00
798 8 0.00
799 19 0.00
800 14 0.00
801 10 0.00
802 24 0.01
803 17 0.00
804 24 0.01
805 21 0.01
806 13 0.00
807 1 0.00
808 11 0.00
809 22 0.01
810 4 0.00
811 2 0.00
812 1 0.00
813 7 0.00
814 4 0.00
815 17 0.00
816 10 0.00
818 2 0.00
819 2 0.00
820 6 0.00
822 2 0.00
823 3 0.00
826 3 0.00
827 1 0.00
828 11 0.00
829 2 0.00
831 1 0.00
832 1 0.00
833 1 0.00
834 3 0.00
837 1 0.00
838 3 0.00
839 12 0.00
840 9 0.00
841 1 0.00
843 6 0.00
844 1 0.00
845 3 0.00
846 1 0.00
847 6 0.00
848 1 0.00
849 2 0.00
850 4 0.00
855 5 0.00
856 2 0.00
859 1 0.00
861 1 0.00
863 1 0.00
864 1 0.00
865 5 0.00
866 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (713 bp):
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCAT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAAGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTCGAAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGAGCCCCTCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGTGAT
GCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATG
Found at i:14177672 original size:718 final size:717
Alignment explanation
Indices: 14174294--14177821 Score: 4628
Period size: 718 Copynumber: 5.0 Consensus size: 717
14174284 GATGAAAAGA
* * *
14174294 GCGGGCGGGCACTACGCTGGCCAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
14174359 TGGGTTTAGGCACATCTTCACATTTCTGCGTGCGAATGCCATTTTTATGGCTTGTAAATTCGTAC
66 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
14174424 AATGGTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT-ATGAT
* * * *
14174489 TTTTAAAACTTTTTACGGTTCGAGATTTTTCAAAATTTTTTCGAAAGG-GTTTTTGGCCCCAAAC
195 TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG-TTTTGGCCCCCAAC
*
14174553 TTGGTAGACGTGATCCTTGTATTTTTGTTGTCATGCACAAAAAAATT-AGCTAAAAACTCGAAGT
259 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
14174617 GTACAAGATTTTGTGACTATTTGAAAAAAGAGTCCCCATTTAAGACACTTTAATGGCTACTGACA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
14174682 GCAAACCTGTAAAATCTCAAACGCTCTTTAA-GGGGTGGTGAGTTCTTGCGGTTTGATGAGGGAT
389 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT-GTGAGTTCTCGAGGTTTGATGAGGGAT
* * ** * *
14174746 AGGGGGCCAATATAAGGGCCACGTACTGGCACCCATCACACATCATGTGCGCACACCCGCCCCGG
453 AAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGA
* * *
14174811 CCCCCCGATCA-CCGAACCCCAATGCCACCGGTCAGGTTCTCCGGTAATGCT----C-----T--
517 CCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
* * * * *
14174864 --AG-CGAAGAAAAATATGGCACCAGCACATACCCGAGCCCAGCATGTGCTGCTGTAACCCTCGG
582 CCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTCGG
** * * **
14174926 TCCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAGACGAGCGGAA
647 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* **
14174991 GGGCAA
712 GGACGG
* * *
14174997 GCGGGCGGGCATTACGCCTGGCCAGAGAGATGGGATGCGCAAGCCTTGGATCGATAGGGTGGTAG
1 GCGGGCGGGCACTACGCC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
** * *
14175062 GTGGACTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGGCTTGTAAATTCATA
65 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14175127 CAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTTCATGA
130 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT-ATTTTTATGA
* ** * * * * * * *
14175192 TTTTCGAAACTTTTTGCAATTCGGGATTTTTTAAATTTTTTTAGAAA-TATTTTTTGCCCCAAAC
194 TTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCCAAC
* * * *
14175256 TTGGTAGACGTGATCTTTTTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
259 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
14175321 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
14175386 GCAAACTTGT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGAT-
389 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
14175449 AGGTGGCCAATATAAGGGCCGAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGAG
454 AGG-GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGA-
* * * *
14175514 CCCCTCGATCGTCGGAACCTCAATGCCGCTGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
517 CCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
** *
14175579 CCCGGTGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-ACAACCCTCA
582 CCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGA-AACCCTCG
* * * * * * *
14175643 GTCTAGTCCGATCTTAGACTAGGAAGGAAATCCATATGCATAAGCCAACCGAC-AAA--A-----
646 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
*
14175700 CGAACGG
711 CGGACGG
** *
14175707 GCGGGCGGGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCTTGGATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * ** *
14175772 TGGGTTTAGGTACACCTTCATATGTCTATGTGCCAATGCCATTTTTATGGCTTTTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * * *
14175837 AATGATCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTCGTTTTCTATTTTT-TCTAA
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTAT-GAT
* * * *
14175901 TTTTGAAAACTTTTTACGGTTCCAGGATTTTTTTAAAAATTTTTTTTCGAAAAGGCGGTTTGG-C
195 TTTTG-AAACTTTTTGCGGTTCGA-GA-TTTTTT-AAAA--TTTTTTCG-AAAGGAGTTTTGGCC
* * * *
14175965 CCCAAC-TGGTAATATGTGATTCTTGTATTTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAA
253 CCCAACTTGGT-AGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
14176029 CTCAAAGTGT-TAA-ATTTTGTGACCAATTTGAAAAAAGGTGTCCCCATTTAAGACACTTT-ATG
316 CTCGAAGTGTACAAGATTTTGTGACC-ATTTGAAAAAA-GTGTCCCCATTTCAGACACTTTAATG
** * * *
14176091 GCTACTGGC-GCAAACCTGTAAAATC-CAAACACTTTTTAA-GGGGTG-GGGTTCTTGAGGTTTG
379 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * * * *
14176152 ATGAGGAAT-AGGGGGCTATATACGGGCCAAG-ACTAGCACCCATCGCAC-TCATGTGTGCACAC
444 ATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
**** * * *
14176214 CCCCTATCCCCCCCGATCATCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGCTTCTG-
509 CCCCCCGACCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGC-TCCGA
* ** * *
14176278 CGATGGTTCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGAATGTGCTGCCGC
573 CGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGA
* *
14176343 AACCGTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
638 AACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
14176408 CGAGCGGGC--A--G
703 CGAGCGGGCGGACGG
* * ** *
14176419 GCGGGCGGGCAATA-GCCGGCTAGAGAGACGGGATAAGCAAGCCGTGGATCAATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
14176483 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAGGGCTTGTGAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
14176548 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACGACTCATTTTCTATTTTTCATGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT-ATGAT
*
14176613 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGG-CCCCAACT
195 TTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCCAACT
* *
14176677 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
260 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* *
14176742 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGTAG
325 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
14176807 CAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGACTTCTCGAGGTTTGATGAGGGATAG
390 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAA
*
14176872 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCAACC
455 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGACC
** * *
14176937 CACCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACTATAGTGCC
519 C-CCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
** ** * *
14177002 CCGGTGAA-AAAAACTGTGGCACCAGCACATGCTAGAGCCCAGTATTTGCTGCCGAAACCCTCGG
583 CCGACGAAGAAAAA-TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTCGG
* * *
14177066 TCTGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAAGCCAACCGACGAAACGAGCGGGC
647 TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
14177131 GGACGG
712 GGACGG
* *
14177137 GTGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGCATCGATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
14177202 TGGGTTTAGGCATATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGCCTTGTAAATTCATAC
66 TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
14177267 AATGGTCCCTTAAGCCTTCACGTTAAGTTTCTTGGCAAGATGACTCGTTTTCTATTTATTATGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT-TTATGAT
* * *
14177332 TTTTGAAACTTTTTGTC-ATTCTAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCCAAC
195 TTTTGAAACTTTTTG-CGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCCAAC
* * *
14177396 TTGGTAGACGTGGTCCTTGTATTTTTGTTGGCATGCA-TAAAAAA-TCAGTTAAAAACTCGAAGT
259 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
14177459 GTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACTGGCA
324 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
14177524 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
389 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
14177589 AGGGGACAATATAAGGGCCGAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCGAC
454 AGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGAC
* * * *
14177654 CCCCTCGGTCGTCGGAACCCCAATGCTGCCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
518 CCCC-CGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGC
** * *
14177719 CCCGACGAAGAAAAATGAAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAAA-CCTTG
582 CCCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG-AAACCCTCG
* * * *
14177783 GTCCGATCTGATCTTACACTGGAAATGAACTCCGTATGC
646 GTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
14177822 TTAGACTGGG
Statistics
Matches: 2446, Mismatches: 303, Indels: 137
0.85 0.10 0.05
Matches are distributed among these distances:
702 7 0.00
703 174 0.07
704 381 0.16
705 59 0.02
706 39 0.02
707 12 0.00
708 173 0.07
709 214 0.09
710 54 0.02
711 208 0.09
712 64 0.03
713 19 0.01
714 203 0.08
715 50 0.02
716 71 0.03
717 5 0.00
718 438 0.18
719 230 0.09
720 45 0.02
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (717 bp):
GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
TGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTATGATT
TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCCAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCC
CCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG
ACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGAAACCCTCGGTCTG
GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGAC
GG
Found at i:14177824 original size:26 final size:26
Alignment explanation
Indices: 14177795--14177847 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14177785 CCGATCTGAT
14177795 CTTACACTGGAAATGAACTCCGTATG
1 CTTACACTGGAAATGAACTCCGTATG
* * *
14177821 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGAAATGAACTCCGTATG
14177847 C
1 C
14177848 CTAAGTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGAAATGAACTCCGTATG
Found at i:14178743 original size:25 final size:26
Alignment explanation
Indices: 14178700--14178777 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 26
14178690 CCGGTTCGAT
*
14178700 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATCAACTCCGTATG
14178726 CTTAGAC-GGGAATCAACTCCGTATG
1 CTTAGACAGGGAATCAACTCCGTATG
* *
14178751 CTTAGACTGGGAATCAACTCTGTATG
1 CTTAGACAGGGAATCAACTCCGTATG
14178777 C
1 C
14178778 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
25 24 0.49
26 25 0.51
ACGTcount: A:0.28, C:0.22, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATCAACTCCGTATG
Found at i:14180363 original size:26 final size:26
Alignment explanation
Indices: 14180327--14180379 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14180317 CTGATCTGAT
14180327 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14180353 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14180379 C
1 C
14180380 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14181361 original size:895 final size:893
Alignment explanation
Indices: 14179587--14181497 Score: 2843
Period size: 895 Copynumber: 2.1 Consensus size: 893
14179577 GCCCAGCATG
*** ** *
14179587 TGCTGCTG-CAACCCTCGGTCCAATCAGATCTTAGACTAAGAATGAACTTCGTATGCCTAAGCCA
1 TGCTG-TGCCAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14179651 ACCGACGAAACAAGCGGGC-GGACGGGCACTACGTCGGCCAGAGAGACGGGATGAGCAAGCCGTG
65 ACCGACGAAACGAGCGGGCGGGA--GGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTG
14179715 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
128 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
* *
14179780 TGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCG
193 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACAACTCG
*
14179845 TTTTCTATTTATAACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAACTTTTTTAAGAAG
258 TTTTCTATTTATAACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTAAGAAG
*
14179910 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATC
323 GAGTTTT-GCCCCAAACTTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAAAAAATC
* *
14179975 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAGTTGAAAAAAGTGACCCCATTTTAGACAC
387 AGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCAGTTGAAAAAAGTGACCCCATTTCAGACAC
*
14180040 TTTACTGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
452 TTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
*
14180105 AGGTTTGATGAGGGATAGGGAGCCAATATAAGATCCAAGTACCAGCACCCATCGCACATCATGTG
517 AGGTTTGATGAGGGATAGGGAGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
14180170 CGCACACCCGCCTTGGCCCCCCGATCGCTGGAACCCCAATGCCACCGATCAGGTTCTCCAGAGAT
582 CGCACACCCCCCTAGCCCCCCCGATCGCTGGAACCCCAATGCCACCGATCAGGTTCTCCAGAGAT
* * *
14180235 GCTCCAGCGATGGTGCCCCGACGAAGAAAAATATGCCACCAGCACATGCCCGAGCCCAGCATGTG
647 GCTCCAGCGATGGTACCCCGACAAAGAAAAATACGCCACCAGCACATGCCCGAGCCCAGCATGTG
* ** *
14180300 CTACCGAAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
712 CTACCGAAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGA
** *
14180365 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGTCGACCAGAGGGG
777 ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGA
*
14180430 CAGGATGCGCAAGCCGGGGATCAGTCGAGTCCCCTCTGCATGCTACCGATCC
842 CAGGATGCGCAAGCCGGGGATCAGTCGAGTCCCCTCTACATGCTACCGATCC
*
14180482 TGCTGTGCCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTGTGCCAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14180547 CCGGCGAAACGAGCGGGCGGGAAGGCACTACGCCGGCCAGAGAGACAAGATGCGTAAGCCGTGGA
66 CCGACGAAACGAGCGGGCGGG-AGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
* * * *
14180612 TTGATAGGTTGG-ATGGTGGGTTTAGGCACATCTTCTTATTTCTGCATGCCAATGCCATTTTTAT
130 TCGATAGGGTGGTA-GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
*
14180676 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGT
194 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACAACTCGT
* * * * *** **
14180741 TTTCTATTTTTCACGATTTTCAAAATTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGG
259 TTTCTATTTATAACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTAAGAAGG
* * * * *
14180806 AGTTTAT-CCCCAAACTTGGTGGATGTGATCCTTGTATATTTGTTGGCGTGCACAAAAAAATTTA
324 AGTTT-TGCCCCAAACTTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAAAAAATCA
* * *
14180870 GCTAAAAACTCGAAGTGTATAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
388 GCTAAAAACTCGAAGTGTACAAGATTTTGTAACCAGTTGAAAAAAGTGACCCCATTTCAGACACT
*
14180935 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
453 TTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* *
14181000 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
518 GGTTTGATGAGGGATAGGGAGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * *
14181065 GCACACCCCCCTCAGCCCCCCCGATCGCTGGAACGCTAATGTCACCGATCAGGTTCTCCAGAGAT
583 GCACACCCCCCT-AGCCCCCCCGATCGCTGGAACCCCAATGCCACCGATCAGGTTCTCCAGAGAT
* * *
14181130 GCTCC-GCCGATGGTACCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGTATGT
647 GCTCCAG-CGATGGTACCCCGACAAAGAAAAATACGCCACCAGCACATGCCCGAGCCCAGCATGT
* * *
14181194 GCTACCGCAACCCTTGATCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
711 GCTACCGAAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGG
* * * * *
14181259 AATGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCTTGCGGGCGCTCAACCGGCCAGAGGG
776 AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGG
* * ** * * *
14181324 ACGGGAT-CGCAAGCTGGGGATTGGTCGGGTCCCCCTCTACGTGCTGCCGATCC
841 ACAGGATGCGCAAGCCGGGGATCAGTCGAGT-CCCCTCTACATGCTACCGATCC
** * * * *
14181377 TGCT-ACCACAAACCTCGGTCTGGTCCGATCTTAGACTGGGAATAAACTCCATATGCCTAAGCCA
1 TGCTGTGC-CAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
14181441 ACCGACGAAACGAGC-GG-GTG-GCCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCC
65 ACCGACGAAACGAGCGGGCGGGAGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCC
14181498 ATGTGTCTTG
Statistics
Matches: 913, Mismatches: 94, Indels: 22
0.89 0.09 0.02
Matches are distributed among these distances:
891 33 0.04
893 2 0.00
894 273 0.30
895 601 0.66
896 3 0.00
897 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
TGCTGTGCCAACCCTCGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGAGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACAACTCGTTT
TCTATTTATAACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTAAGAAGGAG
TTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATATTTGTTGGCATGCACAAAAAAAATCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTAACCAGTTGAAAAAAGTGACCCCATTTCAGACACTTTA
ATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGAGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCTAGCCCCCCCGATCGCTGGAACCCCAATGCCACCGATCAGGTTCTCCAGAGATGCTC
CAGCGATGGTACCCCGACAAAGAAAAATACGCCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
CGAAACCCTCGATCTGATCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAACCGACCAGAGGGACAGG
ATGCGCAAGCCGGGGATCAGTCGAGTCCCCTCTACATGCTACCGATCC
Found at i:14191639 original size:26 final size:26
Alignment explanation
Indices: 14191610--14191659 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14191600 CCGGTCCGAT
*
14191610 CTTAGACTGTGAAGGAACTCCGTACG
1 CTTAGACTGGGAAGGAACTCCGTACG
*
14191636 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAAGGAACTCCGTA
14191660 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCGTACG
Found at i:14192534 original size:26 final size:26
Alignment explanation
Indices: 14192505--14192557 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14192495 CTGATCCGAT
* *
14192505 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14192531 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14192557 C
1 C
14192558 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14193030 original size:887 final size:890
Alignment explanation
Indices: 14190870--14197856 Score: 8528
Period size: 887 Copynumber: 7.8 Consensus size: 890
14190860 TGTGCTACTG
* * * * **
14190870 CAACCCTAGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAA
1 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-TGA
** *
14190935 ACGAGCGGGCGGGCAGCCGGGCGGGCACTACGCCAACTAGAGAGACGGGATGCGCAAGCCGTGGA
65 A--A-----C--G-AG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * * * *
14191000 TCAATAGGGTGGTAGGTGGGTTTAGGCACATCATCATATTTTTGCATGCCAATGCCTTTTTTAGG
119 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
14191065 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
184 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
* * ** * * *
14191130 TTTTATTTTTCACAATTTTTGAAACTTTTT-TTGTTCGAGATTTTTTCAAATTTTTTCGAAAGGA
249 TTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
* * * *
14191194 GTTTTGGCCCCAAACATGGTAGATGTGATCCTTGTATTTTTGTTGGCACGCACAAAAAAAAATT-
314 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAC--AAAAAAATTC
* * *
14191258 AGCTAAAAACTCAAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
377 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * * **
14191323 TTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTTTTTAAGGGGGTGTGAGTTCTTG
442 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
* *
14191388 AGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTG
507 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
** * * * * **
14191453 TTCACACCCCCCCGGCCCCCCCGATCA-TCGGAACCCCAGTGCCGCCGGTCAGGTTCTTCGACGA
572 CGCACA-CCCCCCGGGCCCCCCGATCACTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGA
** * **
14191517 TGCTAAGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTGGCATGT
636 TGCTCCGGCGATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC-CACATGT
** * * * * *
14191582 GCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGTGAAGGAACTCCGTACGCTTAGACTGGG
699 GCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
*
14191647 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGATCGCGT--GGGCGTTCAGCCGGCCAGAG
764 AATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA--GCGTCCGGGCGCTCAGCCGGCCAGAG
** * * * *
14191710 GGGCGAGATGTGCAAGCCAGGGATCGGCCGGGTCCCCCTTTGCGTGCTACCGATCCTGCTGCCA
827 GGGCGAGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
** * *
14191774 CAACCCTCAATTTGGTCCGCTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-C--CG--
* * * * *
14191839 ATGAGAGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCAA
61 ATGA-A--ACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
14191904 TTA-GGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCT
123 -TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* * * *
14191968 TGTAAATTCATACAATGGTCCCTTAAGCCTCCACGGGAAGTTTCATGGCAAGACGACTTGTTTTC
187 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
* * * *
14192033 TATTTTTAACGA-TTTTGAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGGAGGAGT
252 TATTTTTCACGATTTTTG-AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * * *
14192097 TTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTCTGTTGGCATGCATAAAACAATTCAGCT
316 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
*
14192162 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTA
381 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * *
14192227 GTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
446 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGT
* * * *
14192292 TTGATGAGGGATAGGGGGCCAACATAAGGGCTAAGTACCAGAACCCATCGCACATCATGTGCTCA
511 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
*
14192357 CACGCCCCCGGGCCCCCCGATCACT-GGAACCCCAATGCCGTCGGTCAGGTTCTCTGGTGATGCT
576 CAC-CCCCCGGGCCCCCCGATCACTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCT
* * * * *
14192421 CCGGCGATGGTGCCCGATGAAGAAAAATGTGGCACCAACACATGCTCG-G-GC-CATGTGCTGCC
640 CCGGCGATGGTGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCACATGTGCTGCC
* * *
14192483 ACAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAAGTCCGTATGCTTAGACTGGGAATAAA
705 ACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
14192548 CTCCGTATGCCTAAGTTAACCGATGAAACGAGCGTCCGGGCGCTCAGCCGACCTGAGGGGCGAGA
770 CTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTCCGGGCGCTCAGCCGGCCAGAGGGGCGAGA
* * *
14192613 TGCACAAGCCAGGGATCGGTCGGGTCTCCCTCTGCGTGCTACCGATCCTGCTGCCA
835 TGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* *
14192669 CAACCCTCGGTTTTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
1 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * * *
14192734 ACGAGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGAAGCGCGAGCCGTGGATAGATAGGGTGG
66 ACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
** * **
14192799 TAGGTGGGTTTATTCACATCTTCATATTTCTGTGTAACAATGCCATTTTTATGGCTTGTAAATTC
131 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
*
14192864 ATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
196 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
* *
14192929 CGATTTTTGAAACTTTTTGCTGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAATTTTGGCCCCA
261 CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
14192994 AACTTGGTAGACATGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
326 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
14193059 ATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTAAAGGCTACTG
391 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
14193124 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
456 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
* **
14193189 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCA
521 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * *
14193254 GCCCCCTCGATCA-TCGGAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGGTGTTGG
586 GCCCCC-CGATCACTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGG
* * * * * * *
14193318 TACGCCGGCGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTCCTGTCGCAACCCT
650 TGC-CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA-CATGTGCTGCCACAACCCT
14193383 CGGTCTG----G----T---C------TG-A-T-C--A----TAGACTGGGAATGAACTCCGTAT
713 CGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* ** * * * *
14193422 GCCTAAGTCAACCCACGAAATAAGCGTGCGGGCACT-ACGCCGGCCAAAGGGGCGGGATGCACAA
778 GCCTAAGTCAACCCATGAAACGAGCGTCCGGGCGCTCA-GCCGGCCAGAGGGGCGAGATGCACAA
* * * * * * * *
14193486 GTCGGGGATTGGTCGGGTCCCCTTTTGTGTGCTGCGGATCTTGCTACCA
842 GCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
** * *
14193535 CAACCCTCGGTCTGGTCTAATCTTAGACTGGGAATGAACTCTGTATGCCTCAGCCAACCGATGAA
1 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * * *
14193600 ACAAGCGGGCGGGCGGACACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGC
66 ACGAGCGGGC--G-GG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
14193665 GTGGTAGGTGGCTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAA
127 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* *
14193730 ATTCATACAATGGTCTCTTAAGCCTTCACGAGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
192 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
* * * ** * *
14193795 TTCATGATTTTCGAACCTTTTTATGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGC
257 TTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * * *
14193860 CCCAAACTTGGGAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTTTAGCTAAAAAC
322 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * * *
14193925 TCTACGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCC
387 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
14193990 GCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGCTCCCGAGGTTTGATG
452 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* * * *
14194054 AGTGATAGGTGGCCAATATATGGGCCAAGTACCAGCACCCATCGCACATCCTGTGCGCACACCCC
517 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * * * ** **
14194119 CTC-GGCCCCCCGATC-GTCAGAACCCCAATGCCGCCGATCTGGTTCTCCGACGATGCTCCGATG
582 C-CGGGCCCCCCGATCACTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCG
* * * *
14194182 ATGGTGCCCCGACCAAGAAAAATGTGGAACCAGCACAAGCCCGAGCCCAACATGTGCTGCCACAA
646 ATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-ACATGTGCTGCCACAA
* *
14194247 CCCTCGGTC-CAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
709 CCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTC
* * * * *
14194311 TGTATGCCTAAGTGAACCCACGAAACGAGCGTCCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGC
773 CGTATGCCTAAGTCAACCCATGAAACGAGCGTCCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGC
* * * * ** * * *
14194376 GA-AAGTCAGGGATCGGCCGGGTCCCCCTCTACGTGCTATCGATCTTGCTACCG
838 -ACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* * ** * * * * *
14194429 TAACCCTCCGTCCAGTCTGATCCTAGACTGGGAATGAACTTCGTATCCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG-A
* * *
14194494 ATGAGCGGGCGGGCTGGTGGACGGGCACTACACCGACCAGAGAGACGGGATGCGCAAGCCGTGGA
65 A--A-----CGAGC--G-GG-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
14194559 TCGATACGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATG
119 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
* * * *
14194624 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAGGTTTCATGGCAAGACGACTTGAT
184 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG-T
* * **
14194689 TTT-TATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAA-TTTTTCAAAAGG
248 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG
* * *
14194752 AGTTTTGGCCCCAAACTTGGGAGACGTGATCCTTATATTTTTTTTGGCATGCACAAAAAAATTCG
313 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* * * *
14194817 GCTAAAAACTCAAAGTGCACACGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
378 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
14194882 TTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAA
443 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* * * *
14194947 GGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCGATCACACATCATGTGC
508 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
** * * * * ** * *
14195012 GCACACCCCCC-AACCCCTCGATC-GTCGAAACCACAATGCTATCGATCAGGTTCTCCGGGGATG
573 GCACACCCCCCGGGCCCCCCGATCACTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATG
*
14195075 CTCCGGCGATGGTG-CC--C----------G-GGCACCAGCACATGCCCGAGCCTAGCATGTGCT
638 CTCCGGCGATGGTGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA-CATGTGCT
* * * *
14195126 ACCGCAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGTAAT
702 GCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * ** *
14195191 GAACTCCATATGCCTAAGTCAACGCATGAAACGAGCGTGCAGGCGCTCAATCGGCCAGAGGGG-T
767 GAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTCCGGGCGCTCAGCCGGCCAGAGGGGCG
* * *
14195255 AGGTTGCACAAGCCGGGGATCGGTCGGGTTCCCCTCTGCGTGCTGCCGATCCTGCTGCCC
832 A-GATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* * * *
14195315 CAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAA
1 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
*
14195380 ACGAGCGGGCGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
66 ACGA--------GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * * *
14195445 TAGGGAGGTAGTTAGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTCATGGCTT
123 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* *
14195510 GTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGATGACTCGTTTTCT
188 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCT
* ** * *
14195575 CTTTTTCACGATTTTTGAAACTTTTTGCGGCTT-GGGATTTTTTAAAATTTTTTCAAAACGATTT
253 ATTTTTCACGATTTTTGAAACTTTTTGCGG-TTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
** * * **
14195639 TTGGTACCAAACTTGGTATACGTGATCCTTGCATTTTGATTGGCATGCACAAAAAAATTCAGCTA
317 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* **
14195704 AAAACTCCAAGTGCCCAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAA
382 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
14195768 TGTCTACTGGCAGCAAACCTGTAAAATCACAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
447 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* *
14195833 TGATCAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTGCGCAC
512 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * *
14195898 ACCCCCCGGCCCCCCCAATCGCT-GGAACCCCAATACCGCCGATCAGGTTCTCC---GA------
577 ACCCCCCGGGCCCCCCGATCACTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCC
* * * *
14195953 --CGATGGTGCCTCGACGAAGAAACATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTG-T
642 GGCGATGGTGCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA-CATGTGCTGCC
* * * * **
14196015 AGCAACCCTCGGTC-CAGTCTGATCTTAGACTGGGAACGAACGCCGTATGCTTAGACTTAGAATG
705 A-CAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * *
14196079 AACTCCGTATGTCTAAGTCAACCCATGAAATGAGCGTGCAGGGCGCTCAGCCGGCCAGAGGGGTG
768 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT-CCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * * * *
14196144 -GAATGCGCAAGCCGGGGAT-GGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGTTGTCG
832 AG-ATGCACAAGCCGGGGATCGG-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* * * * *
14196203 CAACTCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAA
1 CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
* * * *
14196268 ATGAGCGGGCGGGCGGACGGGCGGGCGCTACGTCGGTCAGAGAGACGGGATGCGCAAGCTGTGGA
66 ACGAGCGGGCGGGC--A----------CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
** * *
14196333 TCGATAGGGTGGTAGGTGGGTTTAATCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATG
119 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATG
*
14196398 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGATGACTCGTT
184 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTT
* * * * *
14196463 TTCTATTTTTCACGATTTTTGAAAAC-CTTCGCAGTTCAGGATTTTTTTAAAATTGTTTCGGAAG
249 TTCTATTTTTCACGATTTTTG-AAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAG
** *
14196527 GAGTTTTGGCCAAAAACTTGGTAAACGTGATCCTTGTATTTTTTTTGGCATGCA-AAAAACAATT
312 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA-AATT
*
14196591 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACA
376 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
14196656 CTTTAATGGGTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTC
441 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* **
14196721 AAGGTTTGATGAGGCATAGGGGGCCAATATAAGGGCCAAGTACTGGCACCCATCGCACATCATGT
506 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
14196786 GCGCACAGCCCCCCCGGCCCCCCCGATCAC-CGGAACCCCAATGCCGTTGGTCAGGTTCTCCGGT
571 GCGCACA--CCCCCCGGGCCCCCCGATCACTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGT
* * * * *
14196850 GATGCTCCGACGATGGTGCCTCTACGAAGAAAAATGCGACACCAGCACATGCCCGATCCTCGCAT
634 GATGCTCCGGCGATGGTGCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC-CACAT
** * * * *
14196915 GTGCTGCCGTAACCCTCAGTCTGATCTGATCTTAGATTGGGAATGAACTCTGTATGCTTAGACTG
697 GTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* ** *
14196980 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGTCGGCC-GAG
762 GGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTCCGGGCGCTCAGCCGGCCAGAG
* * * * * **
14197044 GGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTTCGTGCTGTCGATCCTACTGCTG
827 GGGCGAGATGCACAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
* * * *
14197108 CAACCCT-TGTTTCGGTCCGATCTTAGACTGCGAATGAACTTCGTATGCCTAAGCCAACCGATGA
1 CAACCCTCGGTCT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGA
* *
14197172 AATGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTG
65 AACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* *
14197237 GCAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
130 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* *
14197302 CATACAATGG-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTCC
195 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTC
** * *
14197366 ACGATTTTTGAAACTTTTTGCGGTTCCAGATTTTTTAAAATTTTTTTGGAAGGTGTTTTGGCCCC
260 ACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* *
14197431 AAACCTGGTAGACGTGATACTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
325 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
14197496 AAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCGTTTGAGACACTTTAATGGCTACT
390 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
14197561 GGCAGCAAACC-GATAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAG
455 GGCAGCAAACCTG-TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAG
* * *
14197624 GCATA-GGGGCCAATATAAGGGCCAAGTGCCAGCA-CCATCGCACATCATGTGTGCACA-CCCCC
519 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * ** *
14197686 -TGCCCCTTCGATCGC-CGGAACCCCAAGGCAATCGATCAGGTTCTCCGGTGATGCTCCGGCGAT
584 GGGCCCC-CCGATCACTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGAT
* * * * *
14197749 GGTGCCCCAGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCGGCATGTGCTGCCGCAACC
648 GGTGCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-ACATGTGCTGCCACAACC
* * * *
14197814 CTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGC
711 CTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
14197857 CTAAGTCAAC
Statistics
Matches: 5283, Mismatches: 644, Indels: 331
0.84 0.10 0.05
Matches are distributed among these distances:
865 1 0.00
866 179 0.03
868 104 0.02
869 94 0.02
870 374 0.07
872 10 0.00
873 2 0.00
874 2 0.00
875 2 0.00
876 2 0.00
878 2 0.00
879 1 0.00
880 12 0.00
881 5 0.00
882 343 0.06
883 148 0.03
884 10 0.00
885 152 0.03
886 253 0.05
887 637 0.12
888 185 0.04
889 28 0.01
890 40 0.01
891 183 0.03
892 285 0.05
893 238 0.05
894 305 0.06
895 228 0.04
896 45 0.01
897 2 0.00
898 1 0.00
899 49 0.01
900 431 0.08
901 301 0.06
902 278 0.05
903 7 0.00
904 55 0.01
905 125 0.02
906 19 0.00
907 139 0.03
908 3 0.00
909 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
CAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAA
ACGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
GCCCCCCGATCACTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGT
GCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCACATGTGCTGCCACAACCCTCGG
TCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
TAAGTCAACCCATGAAACGAGCGTCCGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCG
GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCA
Found at i:14194301 original size:26 final size:26
Alignment explanation
Indices: 14194265--14194317 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14194255 CCAGTCCGAT
14194265 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
14194291 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14194317 C
1 C
14194318 CTAAGTGAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14195191 original size:26 final size:26
Alignment explanation
Indices: 14195151--14195203 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14195141 CTGATCCAAT
*
14195151 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14195177 CTTAGACTGGTAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14195203 C
1 C
14195204 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14196081 original size:26 final size:26
Alignment explanation
Indices: 14196038--14196089 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
14196028 CCAGTCTGAT
*
14196038 CTTAGACTGGGAACGAACGCCGTATG
1 CTTAGACTGAGAACGAACGCCGTATG
* * *
14196064 CTTAGACTTAGAATGAACTCCGTATG
1 CTTAGACTGAGAACGAACGCCGTATG
14196090 TCTAAGTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAACGAACGCCGTATG
Found at i:14196974 original size:26 final size:26
Alignment explanation
Indices: 14196945--14196997 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14196935 CTGATCTGAT
* *
14196945 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14196971 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14196997 C
1 C
14196998 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14198020 original size:26 final size:26
Alignment explanation
Indices: 14197989--14198038 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14197979 CTGGTATGGT
14197989 CTTAGACTAGGAATGAACTCCGTATA
1 CTTAGACTAGGAATGAACTCCGTATA
* *
14198015 CTTAGACTGGGAATGAAGTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
14198039 CGCCTACGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:14198146 original size:185 final size:185
Alignment explanation
Indices: 14197830--14198163 Score: 465
Period size: 185 Copynumber: 1.8 Consensus size: 185
14197820 CTGGTCTGAT
* * ** **
14197830 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCGTGAAACTAGAGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACTAGAGTGCGGGCGCTCAAC
* * * *
14197895 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGTCGATCC
66 CAGCCAGAGGGGCGAGATACGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGACGATCC
*
14197960 TGCTACCGCGACCCTCAGTCTGGTATGGTCTTAGACTAGGAATGAACTCCGTATA
131 TGCTACCGCAACCCTCAGTCTGGTATGGTCTTAGACTAGGAATGAACTCCGTATA
* * * *
14198015 CTTAGACTGGGAATGAAGTCCGTACGCCTACGTCAACCCACGAAA-TGAGTGTGTGGGCGCTCAA
1 CTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACT-AGAGTGCGGGCGCTCAA
* * *
14198079 CCAGCCAGAGGGGCGAGATACGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCTTGCT-ACAGAT
65 CCAGCCAGAGGGGCGAGATACGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGAC-GAT
*
14198143 CCTGCTATCGCAACCCTCAGT
129 CCTGCTACCGCAACCCTCAGT
14198164 TCGGTCCAAT
Statistics
Matches: 128, Mismatches: 19, Indels: 4
0.85 0.13 0.03
Matches are distributed among these distances:
184 2 0.02
185 126 0.98
ACGTcount: A:0.22, C:0.29, G:0.29, T:0.20
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACGAAACTAGAGTGCGGGCGCTCAAC
CAGCCAGAGGGGCGAGATACGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCGTGCTGACGATCC
TGCTACCGCAACCCTCAGTCTGGTATGGTCTTAGACTAGGAATGAACTCCGTATA
Found at i:14200688 original size:26 final size:26
Alignment explanation
Indices: 14200652--14200703 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14200642 CTGGTCCGAT
*
14200652 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14200678 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14200704 TCTAAGTCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.17, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14202268 original size:26 final size:26
Alignment explanation
Indices: 14202232--14202282 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14202222 CAGTCCGATC
14202232 TTAGACTGGGAATGAACTCCATATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
14202258 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCATATG
14202283 CCTAAGGTAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.16, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:14202975 original size:731 final size:731
Alignment explanation
Indices: 14201573--14203080 Score: 2452
Period size: 731 Copynumber: 2.1 Consensus size: 731
14201563 GGGCGGGCAG
** *
14201573 GCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGTAAGCCATGGATCAATAGGGTGGTAGG
1 GCGGGCGGGCACTACGCCAGCCAGAGAGACGGGAAACGCAAGCCATGGATCAATAGGGTGGTAGG
* *
14201638 TGGGTTTAGGCACATCTTCATATTTGTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
66 TGGGTTTAGGCACACCTTCATATTTGTACGTGCCAATGCCATTCTTATGGCTTGTAAATTCATAC
* *
14201703 AATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCTTTTTCTATTTTTCACGAT
131 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * *
14201768 TTTTGAAACTTTTTACGGTTTGTGATTTTTTAAAATTCTTTCAGAAGGAGTTTTGGCCCCAAACT
196 TTTCGAAACTTTTTACCGTTTGAGATTTTTTAAAATTCTTTCAGAAGCAGTTTTAGCCCCAAACT
* * *
14201833 TGTTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAGAAAATTAGCTAAAAACTCGAAGTG
261 TGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAAATTAGCTAAAAACTCGAAGTG
14201898 TACAAGATTTTGAGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
326 TACAAGATTTTGAGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
14201963 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATAAGGGATAT
391 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATAAGGGATAT
*
14202028 GGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGGCCCA
456 GGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCA
* * *
14202093 CTCGATCATTGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCC
521 CTCGATCATCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCC
* * *
14202158 GACTAAGAAAAATGTGGCAGCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCAGTTC
586 GACTAACAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCAGTTC
*
14202223 AGTCCGATCTTAGACTGGGAATGAACTCCATATGATTAGACTGGGAATGAACTCCGTATGCCTAA
651 AGTCCGATCTTAGACTGGGAATGAACTCCATATGATTAGACTGGGAATGAACTCCATATGCCTAA
14202288 GGT-AACCGACGAAACGA
716 -GTAAACC-ACGAAACGA
* * *
14202305 GCGGGCGGGCACTACGTC-GACCAGAGAGACGGGAAACGCAAGCCGTGGATCGATAGGGTGGTAG
1 GCGGGCGGGCACTACGCCAG-CCAGAGAGACGGGAAACGCAAGCCATGGATCAATAGGGTGGTAG
* **
14202369 GTGGGTTTAGGCACACCTTCATATTTTTGTGTGCCAATGCCATTCTTATGGCTTGTAAATTCATA
65 GTGGGTTTAGGCACACCTTCATATTTGTACGTGCCAATGCCATTCTTATGGCTTGTAAATTCATA
* *
14202434 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
130 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCACGA
* *
14202499 TTTTCGAAACTTTTTGCCGTTT-AGATTTTTTAAAATTTTTTCAGAATGCA-TTTTAGCCCCAAA
195 TTTTCGAAACTTTTTACCGTTTGAGATTTTTTAAAATTCTTTCAGAA-GCAGTTTTAGCCCCAAA
*
14202562 CTTGGTAGACGTGATCCATGTATTTTTTTTGGCATGCA-AAAAAAAATTCAGCTAAAAACTCGAA
259 CTTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAAATT-AGCTAAAAACTCGAA
*
14202626 GTGTACAAGATTTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTAG
323 GTGTACAAGATTTTGAGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTAG
* *
14202691 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGG
388 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATAAGGGA
*
14202756 TATGGGGCCAACATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
453 TATGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* *
14202821 CCACTCGATCGTCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGC
518 CCACTCGATCATCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGC
* *
14202886 CCCGACTAACAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGTTGTTGCAACCCTCAG
583 CCCGACTAACAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCAG
*
14202951 TTCAGTCCGATCTTAGACTGGGAATGAACTCCATATGATTAGATTGGGAATGAACTCCATATGCC
648 TTCAGTCCGATCTTAGACTGGGAATGAACTCCATATGATTAGACTGGGAATGAACTCCATATGCC
14203016 TAAGTCAAACCACGAAACGA
713 TAAGT-AAACCACGAAACGA
* * * * * * **
14203036 ACGTGCGGGCGCT-CAGCCGGCCAAAGGGACGGGATGCGCAAGCCA
1 GCGGGCGGGCACTAC-GCCAGCCAGAGAGACGGGAAACGCAAGCCA
14203081 GCGATCGGCA
Statistics
Matches: 717, Mismatches: 52, Indels: 15
0.91 0.07 0.02
Matches are distributed among these distances:
730 12 0.02
731 502 0.70
732 203 0.28
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (731 bp):
GCGGGCGGGCACTACGCCAGCCAGAGAGACGGGAAACGCAAGCCATGGATCAATAGGGTGGTAGG
TGGGTTTAGGCACACCTTCATATTTGTACGTGCCAATGCCATTCTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCACGAT
TTTCGAAACTTTTTACCGTTTGAGATTTTTTAAAATTCTTTCAGAAGCAGTTTTAGCCCCAAACT
TGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAAAATTAGCTAAAAACTCGAAGTG
TACAAGATTTTGAGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTAGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATAAGGGATAT
GGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCA
CTCGATCATCGAAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGATGATGGTGCCCC
GACTAACAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCAGTTC
AGTCCGATCTTAGACTGGGAATGAACTCCATATGATTAGACTGGGAATGAACTCCATATGCCTAA
GTAAACCACGAAACGA
Found at i:14202999 original size:26 final size:26
Alignment explanation
Indices: 14202963--14203013 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14202953 CAGTCCGATC
14202963 TTAGACTGGGAATGAACTCCATATGA
1 TTAGACTGGGAATGAACTCCATATGA
*
14202989 TTAGATTGGGAATGAACTCCATATG
1 TTAGACTGGGAATGAACTCCATATG
14203014 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.33, C:0.14, G:0.24, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGA
Found at i:14204733 original size:26 final size:26
Alignment explanation
Indices: 14204697--14204749 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14204687 CCGAGCCGAT
*
14204697 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
14204723 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
14204749 C
1 C
14204750 CTAGGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:14205636 original size:26 final size:26
Alignment explanation
Indices: 14205598--14205650 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14205588 CTGATCCAAT
*
14205598 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14205624 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14205650 C
1 C
14205651 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14208709 original size:902 final size:894
Alignment explanation
Indices: 14206500--14211661 Score: 6313
Period size: 871 Copynumber: 5.8 Consensus size: 894
14206490 TTCCGGTCTG
* * * * *
14206500 ATCTTAGATTGGGAATGAACTCCGTATGACTAAGCCAACCCACGAA-A-TGA--G-C-GTGCGGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAGAGCGACGGACGGGGCGGG
* * * * *
14206559 CGCT-CAGCC-AGCCAGAAAGACGGGATGCGCAAGTCGTGAATCGATAGGGTGGCAGGTGGGTTT
66 CACTAC-GCCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
14206622 AGGCACATCTTCATATTTCTGTGTGCCAGTGCCATTTTTATGGCTTGCAAATTCATACAATGGTC
129 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
14206687 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACTACTCATTTTTCTATTTTTCATGATTTTCGA
194 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCATGATTTTTGA
* * * *
14206752 AACTTTTTACGGTTC-AAAATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTTG
258 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
14206816 ACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTTGAAGTGTACAAG
323 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
14206881 ATTTTGTCACTATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACT
388 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * * * *
14206945 TGTAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTCATTAAGGATATGGGGCA
453 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* ** * * *
14207010 AATATAAGGGCCAAGTACCAGCACCCACCATAGATCATATGTGCACACCCCTCCGGCCCACCCGA
518 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCC-CCCGA
* ** * * * ** *
14207075 TTGTCGGAACCCCAATGTTGTCGGTCAGGTTCTCCGACGATGCTCCAATGATGGTGCGTCGATGA
581 TCGTCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* ** * *
14207140 AGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTATCGCAACCCTTGATCCGGTCC
646 AGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAG-TTCGGTCC
* * * *
14207205 GATCTTAGACTA-GAATGAATTCTGTATGCTT-GATTGGGAATGAACTCCGTATGCCTAAGTCAA
710 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
* * * * *
14207268 CCCATGAAACGAACGTGCCGGCGCTCAACCGGCCAGAGGGGCGAGATGCGCAAACCGGGGATCGG
775 CCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG-GGTGCGCAAGCCGGGGATCGG
* * * * ** **
14207333 -CTGGGTCCCCCTCTGTGTGCTGCCG-TCCTACTACCGTAACCCTCAATCTGGTCTG
839 TC-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCCA
* *
14207388 ATCTTAGACTGGGAATGAACTCCGTATTCCTAAGGCAACCGACGAA-A-CGA--G-C-GGGCGGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAGAGCGACGGACGGGGCGGG
* * *
14207447 CACTACGTCGACTAGAGAGACGGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * * *
14207512 GCACACCTTCTTATTTTTGTGTGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
14207577 TTAAGCCTTCAGGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
* * *
14207642 TTTTTGCGGTT-TAGATTTTTTAAAATTTTTTCGAAAGGCA-TTTTGGCCCCAAACTTGGTAGAT
261 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGG-AGTTTTGGCCCCAAACTTGGTAGAC
* * *
14207705 GTGATCCATGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAGAACTCAAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
14207770 TTTGTGACCATTTGAAAAAAGAGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
14207835 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGATGTTTGATGAGGGATATGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* * *
14207900 CATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTCCGCACACCCCCCGGCCCACCCGATCG
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC-CCCGATCG
* * * ** * * * *
14207965 TCGGAACCCCAATGTCGCCGGTCAAGTTCTCCGGCGATGCTCTAATGATGATGCCCCAACTAAGA
584 TCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
* * *
14208030 AAAATGCGCCACCAGCACATGCCCGAGCCTAGCATGTGCTGCTGCAACCCTCAGTTCGGTCCGAT
649 AAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-AGTTCGGTCCGAT
* * * *
14208095 CTTAGATTAGGAATGAACTCCATATGATTAGACTGGGAATGAACTCCATATGCCTAAGTCAAACC
713 CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
* * * * * *
14208160 ACGAAATGAGCATGCGGGCGCTCAGCCGGCCAGAGGGACGGGTGCGCAAGTCGGGGATCGGTTGG
778 ACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGTGCGCAAGCCGGGGATCGGTCGG
* * * * * *
14208225 GTCCCCCTTTGCATGTTGTCGATCCTACTACCGCATCCCTTGGTCTGGTCCA
843 GTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCCA
* * * *
14208277 ATCTTAGGCTAGGAATGAACTCCGTATGCGTAAGCCAACCGACGACACGAGCGGGCGGACGGGTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-A-GAGC-GACGGAC--G-G
*
14208342 GGCGGGCACTACGCCGACCAGAGAGACGGGATGCG-AAGTCGTGGATCGATAGGGTGGTAGGTGG
60 GGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * ** * *
14208406 GTTTGGGCACATATTCATATTTCTACGTGCCAATACCATTTTTTATGGCTTGTAAATTCATGCAA
125 GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAA
*
14208471 TGGTACCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
189 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * *
14208536 TTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAA-TAT
254 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACT-T
** *
14208600 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAACCAAATTCAGCTAAGAACTCGAAGTGT
318 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * *
14208665 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATAGCTACTAGTAGC
383 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
14208730 AAACCTGTAAAAACTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
448 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
14208795 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCACCTGGCAC
513 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CC-GGC-C
* * * ** *
14208860 CCCCAATCGTCAGAACCCCAATGCCGTCGCTCAAGTTCTCCGGTGATGCTCCGACGATTGTGCCC
575 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * *
14208925 CGACGAAGAAAAATACGGCACCAACACATGCTCGAGCCCAGAATGTGCTGCCGCAACCC----TC
640 CGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAGTTC
14208986 -G---G-TC-----C-----A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCATATGCCTAA
705 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAA
* * * * * * *
14209030 ATTAACCCACGAAACGAGCGTGCGGGCTCTCAACCAGCCAGAGGGGCGAGATGCACAAGCCGAGG
770 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG-GGTGCGCAAGCCGGGG
* * * ** * * * *
14209095 ATCGATCGGGTCCCCCTCTTCATGCTACCGATCCTGCTACCACAACCCTTGGTCCGGTCCG
834 ATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCCA
* ***
14209156 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AA-A---ATAAAC--GGCGGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAGAGCGACGGACGGGGCGGG
* * **
14209214 CACTACACCGACCAGAGAGACGGGATGCGTAAGCTATGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** * *
14209279 GCACATCTTCATATTTCTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCC
131 GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * *
14209344 TTAAGCCTTCACGTAAAGTTTCTTGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
** * * *
14209409 TTTTTGTGGTTC-AGGATTTTTTAAAATTTTTTCGAAAAGATTTTTGGCCCCAAACTTGGGAGAC
261 TTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
14209473 GTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAGAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
14209538 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * *
14209603 TAAAATCTCAAATGCTCTTTAACGGGCTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
** * * *
14209668 TATAAGGGCCAAGTACCAGCACCCATCTTACATCATGTGCGCACGCCTCCCTGGCACCCTCGATC
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGC-CCCCCGATC
* * * * *
14209733 G-CTGGAACCCCAATACCGTTGGTCAGGTTCTTCGACGATGCTCCGATGATGGTGCCCCGACGAA
583 GTC-GGAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
*
14209797 GAAATATGC-AGCACCAGCACATGCCCGAG-CCA--A--T-CT----------TA---------G
647 GAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAGTTCGGTCCG
* *
14209836 A-C-T-G----GGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTTAAC
711 ATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
* * * * * * * *
14209894 CCATGAAATGAGCTTGCGGGCTCTCAACCGGCCAGAAGGGCGGGATGCGCAAGCTGAGGATCAGT
776 CCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGG-TGCGCAAGCCGGGGATCGGT
* *
14209959 CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGATCTGGTCCA
840 CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCCA
* **
14210014 ACCTTAGGA-TGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAAAGAGCGGACGGACGGGC
1 ATCTTA-GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--AAGAGC-GACGGACGGG-
* * * * * * * * *
14210078 GGGTCGGCACTACGTCGGCCAGAAAGATGAGATGTGCAAGCCATGGATGGATAGGGTGGTAGGTG
61 GCG--GGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * *
14210143 GGTTTAGGGACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAG
124 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* *
14210208 TTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTCTTTTTCATGATTT
189 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * *
14210273 TGGAAACTTTTTACGGTTCGAAATTTCTTAAAATTCTTTT-GGAAGGAGTTTTGGCCCCAAACTT
254 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT-TTTTCGAAAGGAGTTTTGGCCCCAAACTT
*
14210337 GGTAGAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
318 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * * * *
14210402 ACATGATTTTGTGACTATTTGAAAAAAGTGTCCCCATTACAGACACTTTAATGGATACTGGCGGC
383 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * *
14210467 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCAAGGATTGATGAGGGATAGG
448 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
14210532 GGGCTAATATAAGGGCCAAGAACCAGCACCCATCACACATCATATGCGCACACCCTCCCCGGCCC
513 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCCGGCCC
* * * * * * *
14210597 CCCGGTGGTCGAAACCCCAATGCCGCCTGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCC
576 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * *
14210662 GATGAAGAAAAATGCAACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTAGATCT
641 GACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAGTTC-
* * * * *
14210727 GATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAA
705 GGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAA
* * * * * *
14210792 GTGAACCCACAAAACGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAGGG
770 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGG-TGCGCAAGCCGGGG
* * * * * *
14210857 ATCAGCCGAGTCCCCCTCTACGTGCTATCGATCCTGCTACCGCAACCCTCAGTCTGGTCCA
834 ATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCCA
* * *
14210918 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACAGACGTAACGAGCAGACGGAC-GGAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-GAGC-GACGGACGGGGC
* *
14210982 GGGCACTACGTCTG-CCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
63 GGGCACTACG-CCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
14211046 TTAGGGACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
127 TTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
14211111 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
192 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * ** *
14211176 AAACTTTTTACGGTTCGGGGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCTGCAAACCTGGTA
257 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
14211241 GACATGATCCATGTAATTTTGTTGGCATGCAAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
322 GACGTGATCCTTGTATTTTTTTTGGCATGC--ACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
14211306 AAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAA
385 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
14211371 ACCTGTAAAATCTCAAATGCTGTTTAAGGGGTTGTGAGTTATCGAGATTTGATGAGGGATAGGGG
450 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
** *
14211436 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTTGACCCCCCG
515 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCG
* * *
14211501 ATCGCCGGAACCCCAATGCCGTCGGT-AAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGAC
580 ATCGTCGGAACCCCAATGCCGTCGGTCAA-GTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * * * * *
14211565 GAAGAAAATTACGGCACCAGCACATGCTCGAGTCCAGCATGTGCTGCCGCAACCCTCAGTCCAGT
644 GAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT-AGTTCGGT
*
14211630 CTGATCTTAGACTAGGAATGAACTCCGTATGC
708 CCGATCTTAGACTAGGAATGAACTCCGTATGC
14211662 CTAAGCCAAC
Statistics
Matches: 3702, Mismatches: 461, Indels: 210
0.85 0.11 0.05
Matches are distributed among these distances:
848 2 0.00
852 1 0.00
853 1 0.00
856 3 0.00
857 3 0.00
858 171 0.05
859 4 0.00
860 1 0.00
861 2 0.00
862 2 0.00
864 4 0.00
865 86 0.02
866 408 0.11
867 62 0.02
868 1 0.00
869 2 0.00
871 528 0.14
872 19 0.01
874 1 0.00
875 1 0.00
876 1 0.00
877 3 0.00
878 70 0.02
879 102 0.03
880 3 0.00
883 1 0.00
884 1 0.00
887 294 0.08
888 389 0.11
889 130 0.04
890 1 0.00
892 1 0.00
893 1 0.00
894 3 0.00
895 1 0.00
896 1 0.00
897 3 0.00
898 2 0.00
899 8 0.00
900 457 0.12
901 144 0.04
902 469 0.13
903 8 0.00
904 305 0.08
905 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAGAGCGACGGACGGGGCGGG
CACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC
GGAACCCCAATGCCGTCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
AATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTAGTTCGGTCCGATCTT
AGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGTGCGCAAGCCGGGGATCGGTCGGGTC
CCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGGTCCA
Found at i:14209882 original size:26 final size:26
Alignment explanation
Indices: 14209831--14209883 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14209821 CCGAGCCAAT
**
14209831 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14209857 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14209883 C
1 C
14209884 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14210771 original size:26 final size:26
Alignment explanation
Indices: 14210735--14210787 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14210725 CTGATCCGAT
14210735 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14210761 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14210787 C
1 C
14210788 CTAAGTGAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14211571 original size:900 final size:902
Alignment explanation
Indices: 14209829--14211661 Score: 2682
Period size: 900 Copynumber: 2.0 Consensus size: 902
14209819 GCCCGAGCCA
* *
14209829 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTTAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTGAAC
** * * * * *
14209894 CCATGAAATGAGCTTGCGGGCTCTCAACCGGCCAGAAGGGCGGGATGCGCAAGCTGAGGATCAGT
66 CCACAAAACGAGCGTGCGGGCTCTCAACCGGCCAGAAGGGCGGGATGCACAAGCAGAGGATCAGC
* * * *
14209959 CGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGATCTGGTCCAACCTTAGGAT
131 CGAGTCCCCCTCTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCTGGTCCAACCTTAGGAT
* * *
14210024 GGGAATGAACTCTATATGCCTAAGCCAACCGACGAAAAGAGCGGACGGACGGGCGGGTCGGCACT
196 GGGAATGAACTCTATATGCCTAAGCCAACAGACGAAAAGAGCAGACGGACGGAC-GG-CGGCACT
* * *
14210089 ACGTCGGCCAGAAAGATGAGATGTGCAAGCCATGGATGGATAGGGTGGTAGGTGGGTTTAGGGAC
259 ACGTCGGCCAGAAAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGGAC
* * *
14210154 ATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTTGTCCCTTAA
324 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
14210219 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTCTTTTTCATGATTTTGGAAACTTTT
389 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGGAAACTTTT
* **
14210284 TACGGTTCGAAATTTCTTAAAATTCTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGAGGTGAT
454 TACGGTTCGAAATTTCTTAAAATTCTTTTGGAAGGAGTTTTGGCCCCAAACCTGGTAGACATGAT
* * * * * *
14210349 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACATGATTTTGT
519 CCATGTAATTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTCGT
* *
14210414 GACTATTTGAAAAAAGTGTCCCCATTACAGACACTTTAATGGATACTGGCGGCAAACCTGTAAAA
584 GACCATTTGAAAAAAGTGTCCCCATTACAGACACTTTAATGGATACTGGCAGCAAACCTGTAAAA
* *
14210479 TCTCAAATGCTCTTTAAGGGGGAGTGAGTTCTCAAGGATTGATGAGGGATAGGGGGCTAATATAA
649 TCTCAAATGCTCTTTAAGGGGGAGTGAGTTATCAAGGATTGATGAGGGATAGGGGGCCAATATAA
* * * *
14210544 GGGCCAAGAACCAGCACCCATCACACATCATATGCGCACACCCTCCCCGGCCCCCCGGTGGTCGA
714 GGGCCAAGAACCAGCACCCATCACACATCATATGCGCACACCCTCCCCGACCCCCCGATCGCCGA
* * *
14210609 AACCCCAATGCCGCCTGTCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAA
779 AACCCCAATGCCGCCGGTAAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * *
14210674 TGCAACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCT-AGAT-CTGATCCG
844 TACAACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAG-TCCAG-TCCG
* * *
14210733 ATCTTAGACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTGAAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTGAAC
* *
14210798 CCACAAAACGAGCGTGCGGGCGT-TCAGCCGGCCAGAGGGGCGGGATGCACAAGCCAG-GGATCA
66 CCACAAAACGAGCGTGCGGGC-TCTCAACCGGCCAGAAGGGCGGGATGCACAAG-CAGAGGATCA
*
14210861 GCCGAGTCCCCCTCTACGTGCTATCGATCCTGCTACCGCAACCCTC-AGTCTGGTCCAATCTTA-
129 GCCGAGTCCCCCTCTACGTGCTATCGATCCTGCTACCGCAACCCTCGA-TCTGGTCCAACCTTAG
* * *
14210924 GACTGGGAATGAACTCTGTATGCCTAAGCCAACAGACGTAACGAGCAGACGGACGGAC-G-GGCA
193 GA-TGGGAATGAACTCTATATGCCTAAGCCAACAGACGAAAAGAGCAGACGGACGGACGGCGGCA
* * *
14210987 CTACGTCTGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGG
257 CTACGTCGGCCAGAAAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGG
14211052 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
322 ACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
*
14211117 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTT
387 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGGAAACTT
*** * **
14211182 TTTACGGTTCGGGGTTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCTGCAAACCTGGTAGACAT
452 TTTACGGTTCGAAATTTCTTAAAATTCTTTT-GGAAGGAGTTTTGGCCCCAAACCTGGTAGACAT
14211246 GATCCATGTAATTTTGTTGGCATGCAAAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
516 GATCCATGTAATTTTGTTGGCATGC--AAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
14211311 TTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACCTG
579 TTCGTGACCATTTGAAAAAAGTGTCCCCATTACAGACACTTTAATGGATACTGGCAGCAAACCTG
* ** *
14211376 TAAAATCTCAAATGCTGTTTAAGGGGTTGTGAGTTATCGA-GATTTGATGAGGGATAGGGGGCCA
644 TAAAATCTCAAATGCTCTTTAAGGGGGAGTGAGTTATCAAGGA-TTGATGAGGGATAGGGGGCCA
* * * **
14211440 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCTTGACCCCCCGAT
708 ATATAAGGGCCAAGAACCAGCACCCATCACACATCATATGCGCACACCCTCCCCGACCCCCCGAT
* * *
14211503 CGCCGGAACCCCAATGCCGTCGGTAAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGACGAA
773 CGCCGAAACCCCAATGCCGCCGGTAAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAA
* ** * * * *
14211568 GAAAATTACGGCACCAGCACATGCTCGAGTCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCTG
838 GAAAAATACAACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCAGTCCG
*
14211633 ATCTTAGACTAGGAATGAACTCCGTATGC
1 ATCTTAGACTGGGAATGAACTCCGTATGC
14211662 CTAAGCCAAC
Statistics
Matches: 830, Mismatches: 89, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
899 4 0.00
900 404 0.49
901 8 0.01
902 194 0.23
903 3 0.00
904 214 0.26
905 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (902 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTGAAC
CCACAAAACGAGCGTGCGGGCTCTCAACCGGCCAGAAGGGCGGGATGCACAAGCAGAGGATCAGC
CGAGTCCCCCTCTACGTGCTATCGATCCTGCTACCGCAACCCTCGATCTGGTCCAACCTTAGGAT
GGGAATGAACTCTATATGCCTAAGCCAACAGACGAAAAGAGCAGACGGACGGACGGCGGCACTAC
GTCGGCCAGAAAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGGACAT
CTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGGAAACTTTTTA
CGGTTCGAAATTTCTTAAAATTCTTTTGGAAGGAGTTTTGGCCCCAAACCTGGTAGACATGATCC
ATGTAATTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTCGTGA
CCATTTGAAAAAAGTGTCCCCATTACAGACACTTTAATGGATACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGAGTGAGTTATCAAGGATTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGAACCAGCACCCATCACACATCATATGCGCACACCCTCCCCGACCCCCCGATCGCCGAAA
CCCCAATGCCGCCGGTAAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATA
CAACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCAGTCCG
Found at i:14212366 original size:26 final size:26
Alignment explanation
Indices: 14212328--14212380 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14212318 CTGGTCTGAT
* *
14212328 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14212354 CTTAGGCTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14212380 C
1 C
14212381 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14213241 original size:26 final size:26
Alignment explanation
Indices: 14213212--14213264 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14213202 TCTATCCGAT
14213212 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14213238 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14213264 C
1 C
14213265 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14213452 original size:8 final size:8
Alignment explanation
Indices: 14213439--14213473 Score: 61
Period size: 8 Copynumber: 4.4 Consensus size: 8
14213429 CCAATGAGCA
14213439 GGCGGACG
1 GGCGGACG
14213447 GGCGGACG
1 GGCGGACG
14213455 GGCGGACG
1 GGCGGACG
*
14213463 GGCGGGCG
1 GGCGGACG
14213471 GGC
1 GGC
14213474 ACTACGCCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
8 26 1.00
ACGTcount: A:0.09, C:0.26, G:0.66, T:0.00
Consensus pattern (8 bp):
GGCGGACG
Found at i:14216615 original size:26 final size:26
Alignment explanation
Indices: 14216575--14216627 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14216565 TTGGTCGGAT
*
14216575 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTACGTATG
14216601 CTTAGACT-GGAAATGAACTACGTATG
1 CTTAGACTAGG-AATGAACTACGTATG
14216627 C
1 C
14216628 AGAGTCAACC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTACGTATG
Found at i:14216892 original size:877 final size:855
Alignment explanation
Indices: 14214963--14219287 Score: 4633
Period size: 877 Copynumber: 4.9 Consensus size: 855
14214953 GTGCTGTCGC
* * **
14214963 AACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA
1 AACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GACGAAA
* * * *
14215028 CGAGCGGGCGGGCGGGCAGGCTGGCACTACG-TCGGCCAGAGAGACGGGATGCGCAAGCTGTCGA
65 CGA-------GGC-GG-AGGCGGGCACTACGCT-GGCCAGAGAGACAGGATGCGCAAGCCGTGGA
* * *
14215092 TCGATAGAGTGCTGGGTGGGTTTAGGCACATCTTCATATCTCTGCATGCCAATGCCATTTTTATG
120 TCGATAGGGTGGTAGGTGGGTTTAGGC-CA----C--ATCT-T-CATGCCAATGCCATTTTTATG
* * * *
14215157 GCTTGTAAATTCATACAATGGTCCCTTACGCCTTCATGTGAAGTTCCATGGCAAGACCACTCGTT
176 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * * *
14215222 TTCTATTTTTCATGACTTTCGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA
241 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGA
* ** * *
14215287 GTTTTGGCCCCAACCTTTTTAGAC-ATGATCCTTGTATTTTTGTTGGCTTGTACAAAAAAAATCA
306 GTTTTGGCCCCAAACTTGGTAGACGA-GATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCA
* * *
14215351 GGTAAAAACTCAAAGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
370 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
14215416 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGA
435 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
* * * *
14215480 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCGTCACACATTATGTGC
500 GGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * * *
14215545 GCACACCCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATG
564 GCACA-CCCCCC-GACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATG
* * * *
14215610 CTCCGACGGTGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCAAGCATGTGC
627 CTCTGACGATGGTG-CCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* * * *
14215675 TGTCGCAACCCTCGATCGGGTCCGATCGTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
691 TGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * * * * * *
14215740 ACGAAACGAGCGTGTGGGCGCTCAGCAGGCCAGAGGGGTGGGATGGGCAAGCCGGGGGTTGGCTG
756 ACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGAGATGAGCAAGCCGAGGATCGACCG
* * * * *
14215805 GGTCCTTCTCTGCATGCTACCAATCCTGCTGCCGT
821 GGTCCTCCTCTACATGCTACCGATCCTGCTACCAT
* * * * *
14215840 AACCCTCGATCTAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAA
* * * *
14215905 CGAGTGGGTGGGCGGGCGGCCGGGCACTACG-TCGGCCAGAGAGACAGGATGTGCAAGCCATGGG
65 CGA-------GGC-GGAGG-CGGGCACTACGCT-GGCCAGAGAGACAGGATGCGCAAGCCGTGGA
14215969 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTATG
120 TCGATAGGGTGGTAGGTGGGTTTAGGC-CA----C--A--TCTTCATGCCAATGCCATTTTTATG
* * * *
14216034 GCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTTAAGCTT-ACTGGCAAGATGACTCGT
176 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA-TGGCAAGACGACTCGT
* **
14216098 TTTATATTTTTCATGATTTTTGAAACTTTTTACGGTTCACCATTTTTTAAAATTTTTTCGAAAGG
240 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGG
* * *
14216163 AGTTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCTTGCACAAAAACATTCA
305 AGTTTTGGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCA
*
14216228 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACT
370 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
*
14216293 TTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGA
435 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
14216357 GGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
500 GGTTTGATGAGGGATAG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* *
14216422 GCACACCCCCCGACCCCCCGATCGCCGGAACCCAAATGCC-CCGATCAGGTTCTCCGATGATGCT
564 GCACACCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCT
* * * *
14216486 TTGGCGATGGTGCCTCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
629 CTGACGATGGTGCC-CGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * * *
14216551 CCACAACCCTCGGTTTGGTCGGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGAAATG
693 CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACT-C-----C---G--T----ATG
*
14216616 AACTACGTATGCAGAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGAG
743 --C--C---T--A-AGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGAG
* * * ** * * * * *
14216681 ATGCGCAAGCCGAGGATTGGCCGGGTCCTCCTCTATGTGCTGCCTATCCTGCTGCTAC
798 ATGAGCAAGCCGAGGATCGACCGGGTCCTCCTCTACATGCTACCGATCCTGCTACCAT
* * ** **
14216739 AACCCTTGGCCCAATCTGATCTTAGACCAGGAATGAACTCCGTATGCCTAAGCCAATCGATTAAA
1 AACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACGAAA
* *
14216804 CGA-GC-G-GGCGGGCACTACACTGACCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGT
65 CGAGGCGGAGGCGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGT
*
14216866 GGTCGGTGGGTTT-GGCCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
130 GGTAGGTGGGTTTAGGCCACA---TC-----T-T-CATGCCAATGCCATTTTTATGGCTTGTAAA
* * *
14216930 TTCATACAATGGTCCCTTAAGCCTTCACGTGTAGTTTCATGGTAAAACGACTCGTTTTCTATTTT
185 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
14216995 TCAAGATTTTTGAAACTTTTTTCGGTTCAAGATTTTTTTAAAATTTTTTCGGAAGGATTTTTGGA
250 TCATGATTTTTGAAACTTTTTACGGTTCAGGA-TTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
** * *
14217060 CCCAAACTTGGTAGACGTCATCCTTGTATTTTTTTTGGCATGCACAAAAAAAAACAGCTAAAAAC
314 CCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAAC
*
14217125 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTCAGACACTTTAATGGCT
379 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
14217190 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTCAAGGTTTGAGG
444 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
14217255 AGGGATAGGGGGCCAGTATAAGGGCCAACTACCAGCACCTATCACACATCATGTGCGCACACCCC
509 AGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
** * * *
14217320 CTCCGACCCCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
572 C-CCGA-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGACG
* * * * ** *
14217385 ATGGTGCCTCGGTGAAGAAAAATACGGCACTAGCACATGCCTGAGCCCAGCATGTACTATCGTAA
635 ATGGTGCC-CGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* * *
14217450 CCCTCGGTCTGGTTCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
699 CCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACG
* * * * * * * *
14217515 AGCGTGCGGGTGCCCAGTCGACCAAAGGGGTGGGATGAGCAAGCC-AGGGATCGATCGGGTCCCC
764 AGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGAGATGAGCAAGCCGA-GGATCGACCGGGTCCTC
* * * *
14217579 CTTTGCGTGCTACCGATCCTGCTACCGT
828 CTCTACATGCTACCGATCCTGCTACCAT
* ** *
14217607 AACCCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAA
1 AACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-GACGAAA
* * *
14217672 CGA-GCGGGTAGGTGGGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
65 CGAGGC-GG-AGGCGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGG
*
14217736 GTGGTAGGTGGGTTTAAG-CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGT-
128 GTGGTAGGTGGGTTTAGGCCACATCTTC--A--------TGCCAATGCCATTTTTATGGCTTGTA
*
14217799 AATTCATACAATGGT-CCTTAAGGCCTTCACGTGAAGTTTCATGCCAAGACGACTCG-TTTCTAT
183 AATTCATACAATGGTCCCTTAA-GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** * * *
14217862 TTTTCATGATTTTTGAAACTTTTTACGGTTTGGGATTTTTT-AAATTTTTT-GTAATGATTTTTG
247 TTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTG
* * * *
14217925 ACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTAGCATGCAC-AAAAAAATCAGCTAAAA
312 GCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAA
* * * *
14217989 ACTCAAAGTGTAAAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTAATTG
377 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
14218054 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
442 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * * * * * **
14218119 TGAGGGATAGGGGCCTAATATAATGGCTAAGCACTAGCACCCATCGTACATCATATGCATACACC
507 TGAGGGATAGGGGCC-AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * *
14218184 CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG-TCGATGCTCCT-TC
571 CCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAT-GATGCT-CTGAC
* * * * *
14218247 TATGGTAACCCGATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTACTGCTGCA
634 GATGGT-GCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
14218312 ACCGTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTT
698 ACCCTCGGTCTGGTCCGATCTTAGACT-GG---G------A-ATG---A-AC------T---C--
* * * *
14218377 CGTATGCCTAAGTGAACCCACAAAACGGGCGTGCGGGCGCTCAGCCGGCCGGAGGGGCGAGATGT
737 CGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGAGATG-
* * * * * *
14218442 A-TAAGCTGGGGATCGATCGGGTCC-CTCTCTACATGCTGCCGATCCTACTACCAT
801 AGCAAGCCGAGGATCGACCGGGTCCTC-CTCTACATGCTACCGATCCTGCTACCAT
* * * * *
14218496 AACCCTTGGTTCGATCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAA
1 AACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGACG-AA
* * * * * *
14218561 TGAGCGGATAGGAGGGTGGGCGGGCACTACGCCGGCCAGAGAGGCAGGATGCGCAAGCTGTGGGT
64 --A-C-G--AGG-CGG-AGGCGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTGGAT
**
14218626 CGATAGGGTGGTAGGTGGGTTTAGG-CACATCTTCATATTTCTGCGTGCCAATGCCATTTTTACA
121 CGATAGGGTGGTAGGTGGGTTTAGGCCACATCTTC--A--------TGCCAATGCCATTTTTATG
14218690 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
176 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
*
14218755 TTCTATTTTTCATGATTTTTGAAACATTTTACGGTTCAGGATTTTTTAAAATTTTTTC-AGAAGG
241 TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGA-AAGG
* ** * * * * *
14218819 AGTTTCGATCCCAAAATTGGTTGAC-ATGATCGTTGTATTTTTGTTGGCATGCACAAAAACATTC
305 AGTTTTGGCCCCAAACTTGGTAGACGA-GATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATC
*
14218883 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACAC
369 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
14218948 TGTAATGGTTACTGGCAAG-AAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGTGAGTTCTC
434 TTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
14219012 CAGGTTTGATGAGGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
498 GAGGTTTGATGAGGGATAGGG-GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * ** **
14219077 GCACACAACACCCC-AGCCCCCTATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCTAACAAT
562 GCGCAC-ACCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGAT
** * *
14219141 GCTCTGGTGATGGTGTCCCGGTGAAGAAAAATACGGCACCAGCACATG-CCGAGCACAGCATGTG
626 GCTCTGACGATGGTG-CCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * *
14219205 CTGCTGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTGCGTTTGCCTAAGCCAACC
690 CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* ** *
14219270 GAGGAAACGAGCGGGCGG
755 CACAAAACGAGCGTGCGG
14219288 ACGGGCGGGC
Statistics
Matches: 2968, Mismatches: 355, Indels: 252
0.83 0.10 0.07
Matches are distributed among these distances:
862 1 0.00
863 124 0.04
864 10 0.00
865 10 0.00
866 182 0.06
867 57 0.02
868 153 0.05
869 9 0.00
870 44 0.01
871 46 0.02
872 92 0.03
873 4 0.00
874 117 0.04
875 55 0.02
876 11 0.00
877 522 0.18
878 8 0.00
879 4 0.00
880 5 0.00
881 1 0.00
882 1 0.00
883 1 0.00
884 2 0.00
885 4 0.00
886 6 0.00
887 175 0.06
888 193 0.07
889 233 0.08
890 12 0.00
891 8 0.00
892 25 0.01
893 113 0.04
894 1 0.00
896 2 0.00
897 111 0.04
898 49 0.02
899 198 0.07
900 11 0.00
901 95 0.03
902 262 0.09
903 11 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (855 bp):
AACCCTCGGTCCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACGACGAAAC
GAGGCGGAGGCGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTG
GTAGGTGGGTTTAGGCCACATCTTCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
GAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
AGACGAGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACA
AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGAT
CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCTGACGATGGTGCCCGATGAAG
AAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGA
TCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAG
CCGACCAGAGGGGCGAGATGAGCAAGCCGAGGATCGACCGGGTCCTCCTCTACATGCTACCGATC
CTGCTACCAT
Found at i:14217026 original size:26 final size:27
Alignment explanation
Indices: 14216994--14217046 Score: 81
Period size: 27 Copynumber: 2.0 Consensus size: 27
14216984 TTTTCTATTT
*
14216994 TTCAAGA-TTTTTGAAACTTTTTTCGG
1 TTCAAGATTTTTTGAAAATTTTTTCGG
*
14217020 TTCAAGATTTTTTTAAAATTTTTTCGG
1 TTCAAGATTTTTTGAAAATTTTTTCGG
14217047 AAGGATTTTT
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
26 7 0.29
27 17 0.71
ACGTcount: A:0.25, C:0.09, G:0.13, T:0.53
Consensus pattern (27 bp):
TTCAAGATTTTTTGAAAATTTTTTCGG
Found at i:14220848 original size:26 final size:26
Alignment explanation
Indices: 14220812--14220864 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14220802 CTGGTCCAAT
14220812 CTTAGACTGGGAATGAAC-TCCGTATG
1 CTTAGACTGGGAATGAACGT-CGTATG
*
14220838 CTTAGATTGGGAATGAACGTCGTATG
1 CTTAGACTGGGAATGAACGTCGTATG
14220864 C
1 C
14220865 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGTCGTATG
Found at i:14221394 original size:893 final size:886
Alignment explanation
Indices: 14219210--14222272 Score: 3897
Period size: 893 Copynumber: 3.5 Consensus size: 886
14219200 ATGTGCTGCT
** * * * * *
14219210 GCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTGCGTTTGCCTAAGCCAACCGAGGA
1 GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
14219275 AACGAGCGGGCGGACGGGCGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
66 AACGAGCGGGCGGGCGGGAGGGCACTATACCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCG
* * **
14219340 ATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTATGTGCCAATGCCATTTTTATGGCT
131 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
* *
14219405 TGCAAATTCATACAATGGT-CCGTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
196 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * *
14219469 TATTTTTCATGATTTTTGAAACATTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTT
261 TATTTTTCAAGATTTTTCAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* ** * * *
14219534 TCGATCCCAAAATTGGTTGACATGATCGTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTA
326 TTGGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
14219599 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
391 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
14219664 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTTGAAATT
456 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTTGAAATT
*
14219729 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACAC
521 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCAC
* * * *
14219794 A-CCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCACCGGTTAGGTTCTTTGGCAATGCTCC
586 ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG---CC-GTCA-G-TC--AGG---TTCTCC
* * * *
14219858 GACGATGGTGCCCCGATGAAGAAAAATGCGACACCAGCATATGCCCAAGCCCAGCA--T-CTA-C
640 GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTATC
* ** ** * *
14219919 --A-GC-C-G-C--AACC--CTT-GA-TCCG-AT---CT--AAT-TTTAGACTGGGAATGAACTT
705 GTACCCTCGGTCTGGTCCATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTT
* * *
14219965 CGTATGCCTAAGTCAACCCACGAAACAAGCGTGCAGGTGCTTAACCGGCCAGAGGGGCGGGATGC
770 CGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * *
14220030 ACAAGCCGGGGATCGATCGGGTCCCCATCTGTGTGCTGTCGATCTTGCTACC
835 ACAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACC
* * ** * * * *
14220082 GCAACCCTCGGTTTGGTCCAATCTTAGACT-GGATTGAACTTCGCATGCCTAAGCCAACCGACCA
1 GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *** *
14220146 AATGAGCGGGCGGGCTGGCGGGCGGGCACTACGTCGGCCAAAGAGATGGGATGCGCAAGCCGTGG
66 AACGAGCGGGC--G--GGCGGGAGGGCACTATACCGGCCAAAGAGACGGGATGCGCAAGCCGTGG
** *
14220211 ATTAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTTCCAATGCCATTTTTAT
127 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
*
14220276 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCAT
192 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
14220341 TTTCTATTTTTTAAGATTTTTAAAACTTTTTTGCGGTCCAGGATTTTTTTAAATTTTTTCGGAAG
257 TTTCTATTTTTCAAGATTTTTCAAAC-TTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAG
* * * * *
14220406 GATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTCGGCATTCAAAAAAAAATTC
321 GAGTTTTGGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
14220471 AGCTAAATATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
386 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
14220536 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTTG
451 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTTG
14220601 AAATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTG
516 AAATTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTG
* *
14220666 CGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGTCAGTCAGGTTCTCCGGTGAT
581 CGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGGCGAT
* * * *
14220731 GGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTATCGTGACC
646 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTATCGT-ACC
* *
14220796 CTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACGTCGT
710 CTCGGTCTGGTCC-ATCTTAGACTGGGAATGAACT-CGTATGCTTAGACTGGGAATGAACTTCGT
* *
14220861 ATGCCTAAGTCAACCCACGAAACGAA-CGTGCGGGTGCTCAGCCGGCCAGAGGGGTGGGATGCCC
773 ATGCCTAAGTCAACCCACGAAAC-AAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCAC
* * *
14220925 AAGTCGGGGATCGA-CTGGGTCCCCCTCTGCGTGCTGTCAATCCTACTACT
837 AAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACC
* *
14220975 GCAACCCTCAGTCTGGTGTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGA
1 GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
14221040 AATGAGCGGGTGGGCGGGCGGGAGGGCACTTTACCGGCCAAAGAAACGGGATGCGCAAGCCGTGG
66 AACGAGC----GGGCGGGCGGGAGGGCACTATACCGGCCAAAGAGACGGGATGCGCAAGCCGTGG
*
14221105 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
127 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAT
* * * *
14221170 GGCTTGTATATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAACACGCCTCGT
192 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * *
14221235 TTTCTATATTTCAAGATTTTTCAAACTTTTTACGGTTCGGGATTTTTTAAACTTTTTTCGGAAGG
257 TTTCTATTTTTCAAGATTTTTCAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGG
** *
14221300 AGTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
322 AGTTTTGGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
* * *
14221365 GCTAAGAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTGAGACACT
387 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* * * * * *
14221430 TTAATGGCTACTGGCAGCAAACATGTAAAATTTCAAATGCTCTTTAAGGGGGCGAGAGTTC-TCA
452 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTTGA
* * * * *
14221494 AGGTTTGATGAGGGATAGGGGGCCAATTTTTAGGGCCATGTACCAGCACCCATCGCACATCATGT
517 A-ATTTGATGAGGGATAGGGGGCCAA-TATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
* * * * *
14221559 GTGCACACCCCCCCGG---CCCCGATCGTTGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGA
580 GCGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGGCGA
* * *
14221621 TGGTGCCCCGACGAAGAAAACTGCAGCACCAGCACATGCCCAAGCCCAGCCATGTGCTGTCGCTA
645 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAG-CATGTGCTATCG-T-
*
14221686 AACCCTCGGTCTGGTCTGATCTTAGACTTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAAC
707 -ACCCTCGGTCTGGTC-CATCTTAGAC-TGGGAATGAAC-TCGTATGCTTAGACTGGGAATGAAC
* * * * *
14221751 TTCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCAGCCGGTCGGAGGGGCGGGTT
768 TTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGAT
** * * * * * *
14221816 GTGCATGCCGGGGATCGATCGGGTTCCCCC-CTGCATGCTGCCCATCCTGTTGCC
833 GCACAAGCCGGGGATCGATCGGG-TCCCCCTCTGCGTGCTGTCAATCCTGCTACC
* * * * * * * *
14221870 ACAAACCTGCA-CCCGGCCTGATCCTAGATTGGGAATGAACTCCGTATGCCTAAGCCGACCGACG
1 GCAACCCT-CAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * ** * * *
14221934 AAACGAACGGGCAGGC---A-GGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCTTGGATC
65 AAACGAGCGGGCGGGCGGGAGGGCACTATACCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATC
* *
14221995 GATAGGGTGGTAAGTGGGTTTAGGGCGCATCTTCCATATTTCTGCGTGCCAATGCCATTTTTATG
130 GATAGGGTGGTAGGTGGGTTTA-GGCACATCTT-CATATTTCTGCGTGCCAATGCCATTTTTATG
* *
14222060 GCTTGTAAATTCATACGATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTT
193 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
14222125 TTCTATTTTTCATGA-TTATCGAAACTTTTTGTC-ATTCTA-GATTTTTTAAAATTTTTTCGGAA
258 TTCTATTTTTCAAGATTTTTC-AAACTTTTT-ACGGTTC-AGGATTTTTTAAAATTTTTTCGGAA
* * * *
14222187 AGAGTTTTGGCCCCCAAATTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAA-T
320 GGAGTTTTGGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
*
14222251 CAGCTAAAAACTCAAAGTGTAC
385 CAGCTAAAAACTCGAAGTGTAC
14222273 CAACACCCAT
Statistics
Matches: 1916, Mismatches: 218, Indels: 98
0.86 0.10 0.04
Matches are distributed among these distances:
867 52 0.03
869 1 0.00
870 5 0.00
871 39 0.02
872 28 0.01
873 2 0.00
874 4 0.00
875 126 0.07
876 63 0.03
877 286 0.15
878 33 0.02
880 2 0.00
883 3 0.00
884 2 0.00
885 2 0.00
886 2 0.00
887 58 0.03
888 35 0.02
889 196 0.10
890 1 0.00
891 90 0.05
892 17 0.01
893 375 0.20
894 299 0.16
895 180 0.09
896 11 0.01
898 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (886 bp):
GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGGCGGGCGGGAGGGCACTATACCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCAAGATTTTTCAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTT
TTGGCCCCAAAATTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGGGGGTGTGAGTTCTTGAAATT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCAC
ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGGCGATGGTGC
CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTATCGTACCCTCGGT
CTGGTCCATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
GTCAACCCACGAAACAAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCCGGGG
ATCGATCGGGTCCCCCTCTGCGTGCTGTCAATCCTGCTACC
Found at i:14221747 original size:26 final size:27
Alignment explanation
Indices: 14221706--14221759 Score: 101
Period size: 26 Copynumber: 2.0 Consensus size: 27
14221696 CTGGTCTGAT
14221706 CTTAGACTTGGGAATGAACTTCGTATG
1 CTTAGACTTGGGAATGAACTTCGTATG
14221733 CTTAGAC-TGGGAATGAACTTCGTATG
1 CTTAGACTTGGGAATGAACTTCGTATG
14221759 C
1 C
14221760 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 20 0.74
27 7 0.26
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (27 bp):
CTTAGACTTGGGAATGAACTTCGTATG
Found at i:14223694 original size:717 final size:711
Alignment explanation
Indices: 14222269--14224663 Score: 2811
Period size: 717 Copynumber: 3.3 Consensus size: 711
14222259 AACTCAAAGT
* * * * *
14222269 GTACCAACACCCATCGCACATCATGTGTGCACA-CCCCCGGCCCACCCCGATCGCCGGAACCCCA
1 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGTCC-CCCCGATCGCCGAAAACCCA
* * * * * *
14222333 ATACCGCCGGTCAGGTTCTCCGGTGATGCTTCAACGATGGTGCCCCGGTGAAGAAAAATGGGGCA
65 ATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCA
* ** * * *
14222398 CCAGCACATGCCCGAGCCCAACATGTGCTGTCGCAAGCCTTGGTCCAGTCCGATCTTAGACTGCG
130 CCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGG
* * * * * * *
14222463 AATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGAAGGGTGGGCAGGCGGGCACTATG
195 AATGAACTCCATATGCCTAAGCCAACCGATGAAA-AAG-TGAA---TGGGCGGGCGGGCACTACG
* * * * *
14222528 CCGGCCAGAGAGACAGGATACGCAAGCCTTGGATCGATA-GGATGTTAGGTGGGTTTAGGCACAT
255 CCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGA-GGTAGGTGGGTTTATGCACAT
*
14222592 ATTCATATTTCT-ACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
319 CTTCATATTTCTGA-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
*
14222656 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTTCATGATTTTTGAAACTTTTT
383 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * * * ** *
14222721 GCAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTCTAGCACCAAACTTAGTTGACGTGATC
448 GTAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGAAGACATGATC
* * ** *
14222786 CTTGTATTTTTGTTGGCACGCATAAAAAAATTCAGCTAAAAGCTCGAAAAGTACAAGACTTTGTG
513 CTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
*
14222851 ACCATTTGAAAAGAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCAAACCTGTAAAAT
578 ACCATTTGAAAA-AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* *
14222916 CTAAAATGCTCTTTAAGGGGGTGTGAGTTTTCGAGGTTT-ACTGAGGGATAGGGGACCAATAT-A
642 CTAAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGA-TGAGGGATAGGGG-CCAATATAA
14222979 AGGGCAA
705 AGGGCAA
* **
14222986 GGTACCAGCACCCACCGCACATCATGTGCGCACACCCGCCACCGGTCCCCCCGATAACCGAAAAC
1 -GTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CC-CCGGTCCCCCCGATCGCCGAAAAC
* * * *
14223051 CCAATGCCGCCAGTCAGGTTCTTCGGCGATGCTCCGGCGATGGTGCCCCGATGATGAAAAATGTG
62 CCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTG
* * * * *
14223116 GCACCAGCACATGCTCGAGCCCAGTATGTGCTACAGCAACCCTCGGTCCGGTCTGATCTTAGACT
127 GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACT
* *
14223181 GGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACAAGTGAATGGGCGGGCAGGCACAACGC
192 GGGAATGAACTCCATATGCCTAAGCCAACCGATGAAA-AAGTGAATGGGCGGGCGGGCACTACGC
* *
14223246 CAGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGAGGTAGGTGGGTTTATGCACATCT
256 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGAGGTAGGTGGGTTTATGCACATCT
* *
14223311 TCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTGAAGCCT
321 TCATATTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
14223376 TCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAAGTTTTTGTG
386 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTA
** *
14223441 GTTCGGGATTTTTTAAAATTTTTTGTGAAGTAGTTTTAGCCCCAAACTTGGAAGACATGATCCTT
451 GTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGAAGACATGATCCTT
* *
14223506 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACC
516 GTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* *
14223571 AATTGAAAAACGTGTCCCCATTTCAGACACTTTAAT-GCTAACTGGTAGCAAACCTGTAAAATCT
581 ATTTGAAAAA-GTGTCCCCATTTCAGACACTTTAATGGCT-ACTGGCAGCAAACCTGTAAAATCT
* *
14223635 GAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGCCAATATAAAGG
644 AAAATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG-GGGCCAATATAAAGG
14223700 GCAA
708 GCAA
* * * *
14223704 GTACCAGCACCGGATCGCACATCATGTGCGCACACCCCTCGG-CCCCCCGATCGTCGGAAACCCC
1 GTACCAGCACC-CATCGCACATCATGTGCGCACACCCCCCGGTCCCCCCGATCG-CCGAAAACCC
*
14223768 AATGACCGCCAGTCCAGGTTCTCCCCGGCGATGCTCCGACGATGGTGCCCCGGT-AAGAAAACTG
64 AATG-CCGCCAGT-CAGGTTCT--CCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATG
* ** * ** *
14223832 CGGCACC-GCACATGCTGGAGCCCAGCATGT-CTGCCGCAACCCTCGGTCTGGTCCGATCTAAGA
125 TGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGA
* * **
14223895 CTGGGAATCAAACTCTATAATGGCCTAAGCCAACCGAATGAAAACAGTGGGCGGACCGGGCGGGC
190 CTGGGAAT-GAACTCCAT-AT-GCCTAAGCCAACCG-ATGAAAA-AGT-----GAATGGGCGGGC
* *
14223960 GGGCACTACGTCGGCCCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
245 GGGCACTACGCCGG--CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGAGGTAGGTGGG
*
14224025 TTTTAT-CACATCTTCATA-TTCTGCAGTGCCAATGCCATTTTTATGGCTTTTAAAATTCATTAC
308 -TTTATGCACATCTTCATATTTCTG-AGTGCCAATGCCATTTTTATGGCTTGT-AAATTCA-TAC
14224088 AATGGTTCCTTGCTTTAAGCCTTCACGTGAAGTTTCATGGCCAAGACGACTCGTTTTCTATTTTT
369 AATGG-TCC---C-TTAAGCCTTCACGTGAAGTTTCATGG-CAAGACGACTCGTTTTCTATTTTT
* * * *
14224153 CATGATTATCGAAAACTTTTTGTCA-TTCCTGGA-TTTTTAAAATTTTTTCAGAAGGAGTTTTGG
428 CATGATTTTTG-AAACTTTTTGT-AGTT-CGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAG
* * * *
14224216 CCCCCAACCTGGTAAGACGTTGATCCTTG--TTTTTCTTGGCAATGCATAAAAGAAA-TCAAGCT
490 CCCCAAACTTGG-AAGAC-ATGATCCTTGTATTTTTGTTGGC-ATGCATAAAA-AAATTC-AGCT
* *
14224278 AAAAACTCGAAGTGTACAAGATTAT-TGACCATTTGAAAAAGTGTTTCCGCATTTCCAGACACTT
550 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAGTG--TCCCCATTT-CAGACACTT
* *
14224342 TAATGGCTACTGGCAGC-AACCTGTAAAAATCTCAAATGCTCTTTAAGGGCGGTGTGAAGTTCTC
612 TAATGGCTACTGGCAGCAAACCTGT-AAAATCTAAAATGCTCTTTAA-GGAGGTGTG-AGTTCTC
*
14224406 GAGGTTTGATGAGGGATAGGGGGACAATATAAAGGGCCAA
674 GAGGTTTGATGAGGGATA-GGGGCCAATATAAAGGG-CAA
*** ** *
14224446 GTACCGAAGCACCCATCGCACATCAATCCACGCACACCACCCTCGACCCTGACGCCCGATCGTCG
1 GTACC--AGCACCCATCGCACATC-ATGTGCGCACACC-CCC-CGGTCC---C-CCCGATCGCCG
* * * ** * *
14224511 -GAACCCAATGCTGCCAGTCAGGTTCTTCGATGATGCTCTGCCGATGGTG-CCCGTCGTGAAG--
57 AAAACCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG--GTGAAGAA
* * * *
14224572 AAATGTGGGCACCAGCAGATGCCCGAGCCCAGCATGTGCTACCGCAGCCCTTGGTCCAGTCTGAT
120 AAATGT-GGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGAT
*
14224637 CTTAGACTGGGAATGAACTCCGTATGC
184 CTTAGACTGGGAATGAACTCCATATGC
14224664 TTAGACTGGA
Statistics
Matches: 1439, Mismatches: 166, Indels: 117
0.84 0.10 0.07
Matches are distributed among these distances:
714 9 0.01
715 15 0.01
716 50 0.03
717 458 0.32
718 81 0.06
719 42 0.03
720 13 0.01
721 160 0.11
722 6 0.00
725 20 0.01
726 5 0.00
727 84 0.06
728 12 0.01
729 8 0.01
730 3 0.00
733 1 0.00
734 25 0.02
735 32 0.02
736 61 0.04
737 34 0.02
738 54 0.04
739 41 0.03
740 11 0.01
741 39 0.03
742 9 0.01
743 10 0.01
744 20 0.01
745 26 0.02
746 12 0.01
747 39 0.03
748 41 0.03
749 8 0.01
750 2 0.00
751 8 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (711 bp):
GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGTCCCCCCGATCGCCGAAAACCCAA
TGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGTGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGA
ATGAACTCCATATGCCTAAGCCAACCGATGAAAAAGTGAATGGGCGGGCGGGCACTACGCCGGCC
AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGAGGTAGGTGGGTTTATGCACATCTTCATA
TTTCTGAGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTAGTTCG
GGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGAAGACATGATCCTTGTATT
TTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGC
TCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAAGGGCAA
Found at i:14224677 original size:26 final size:26
Alignment explanation
Indices: 14224637--14224689 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14224627 CCAGTCTGAT
*
14224637 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
14224663 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14224689 C
1 C
14224690 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14225574 original size:26 final size:26
Alignment explanation
Indices: 14225535--14225587 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14225525 CCGGTCCGAT
* *
14225535 CTTAGATTAAGAATGAACTCTGTATG
1 CTTAGACTAAGAATGAACTCTATATG
*
14225561 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAAGAATGAACTCTATATG
14225587 C
1 C
14225588 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.34, C:0.15, G:0.19, T:0.32
Consensus pattern (26 bp):
CTTAGACTAAGAATGAACTCTATATG
Found at i:14226280 original size:898 final size:901
Alignment explanation
Indices: 14223862--14227340 Score: 4198
Period size: 898 Copynumber: 3.8 Consensus size: 901
14223852 CCCAGCATGT
** * * * * *
14223862 CTGCCGCAACCCTCGGTCTGGTCCGATCTAAGACTGGGAATCAAACT-CTATAATGGCCTAAGCC
1 CTGCCGCAACCCTCAATCCGGTCCAATCTTAGACTGGGAAT-GAACTAC-GT-AT-GCCTAAGCC
* * * * * * *
14223926 AACCGAATGAAAAC-AGTGGGCGGACCGGGCGGGCGGGCACTACGTCGGCCCCAGAGAGACGGGA
62 AACCG-ACG-AAACGAGCGGGCGG-GCGAGCAGGCAGGCACTACGCCGG--CCAGAGAGACGGGA
* *
14223990 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTTA-TCACATCTTCATA-TTCTGCAGTG
122 TGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG-TTTAGGCACATCTTCATATTTCTGCA-TG
*
14224053 CCAATGCCATTTTTATGGCTTTTAAAATTCATTACAATGGTTCCTTGCTTTAAGCCTTCACGTGA
185 CCAATGCCATTTTTATGGCTTGT-AAATTCA-TACAATGG-T-C-T-CTTTAAGCCTTCACGTGA
* * * *
14224118 AGTTTCATGGCCAAGACGACTCGTTTTCTATTTTTCATGATTATCGAAAACTTTTTGTC-ATTCC
244 AGTTTCATGG-CAAGACGACTCGTTTTCTATTTTTCATGATTTTTG-AAACTTTTT-ACGGTT-C
* * *
14224182 TGGA-TTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCCAACCTGGTAAGACGTTGATCCTTG-
305 AGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAAGACG-TGATCCTTGT
* * *
14224245 -TTTTTCTTGGCAATGCATAAAAGAAATCAAGCTAAAAACTCGAAGTGTACAAGATTAT-TGACC
369 ATTTTTGTTGGC-ATGCA-AAAAAAAATC-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
14224308 ATTTG-AAAAAGTGTTTCCGCATTTCCAGACACTTTAATGGCTACTGGCAGC-AACCTGTAAAAA
431 ATTTGAAAAAAGTG--TCCCCATTT-CAGACACTTTAATGGCTACTGGCAGCAAACCTGT-AAAA
*
14224371 TCTCAAATGCTCTTTAAGGGCGGTGTGAAGTTCTCGAGGTTTGATGAGGGATAGGGGGACAATAT
492 TCTCAAATGCTCTTTAAGGG-GGTGTG-AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*** *
14224436 AAAGGGCCAAGTACCGAAGCACCCATCGCACATCAATCCACGCACACCACCCTCGACCCTGACGC
555 -AAGGGCCAAGTACC--AGCACCCATCGCACATC-ATGTGCGCACACC-CCCCCGA-CC---C-C
* * * * * * *
14224501 CCGATCGTCGGAA-CCCAATGCTGCCAGTCAGGTTCTTCGATGATGCTCTGCCGATGGTG-CCCG
610 CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * ** * * *
14224564 TCG-TGAAGAAATGTGGGCACCAGCAGATGCCCGAGCCCAGCATGTGCTACCGCAGCCCTTGGTC
675 GCGAAGAA-AAATG-CAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTTGGTC
* * * * *
14224628 CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCTGTATGCGTA
738 CGGTCCGATCTTAGA-TAGGAATGAACTCTGTATGCTTAGACTGG-AATGAACTCTGTATGCCTA
* * *
14224693 AGTCAACCCACGAAACGAGTGTGCGGGCACTAAGCCAGCCAAAGGGGCAAGATGCGTAAGCCGGG
801 AGTCAACCCACGAAACGAGTGTGCGGGC-TTCAGCCAGCCAAAGGGGCAGGATGCGTAAGCCGGG
** *
14224758 GATCGA-CTGGGT-CCCCTACTACGTGCTGTTGATCCAG
865 GATCGATC-GGGTCCCCCT-CTACGTGCTGCCGATCCTG
* *
14224795 CTGCCGCAACCCTCAATCCGATCCAATCTTAGACTGGGAATGACCTACGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACC
* * * *
14224860 GACGAAACGAGCGGGCGGACGAGCATGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGTAAGC
66 GACGAAACGAGCGGGCGGGCGAGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
14224925 CGTGG-TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATTCAATT
131 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
14224989 TTTATGGCTTGTAAATTCATACAATGGTCAC-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
196 TTTATGGCTTGTAAATTCATACAATGGTCTCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
14225053 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTC
261 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
* *
14225118 AGAAGGAGTTTTGGCCCTAAACATGGTAA-ACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAA
326 AGAAGGAGTTTTGGCCCCAAACTTGGTAAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAA
* * *
14225182 AAATCAGCTAAAAACT-AAAGTGTGCAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCA
391 AAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * *
14225246 GACACTTTAATGGCTACTAGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
456 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
14225311 TCTCGAGGTTTCATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACAAGTACCCATCGCACATC
521 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
14225376 ATGTGCGCACA-CCCCCC-ACCCCCTGATCGCCTGAACCCTAATGCCGTCGGTCGGGTTCTCCGA
586 ATGTGCGCACACCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
* * * *
14225439 CGATGCTCTGGCGATGGTTCCCCGACAAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCA
651 CGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCA
* *
14225504 TGTCCTACCGTAACCCTTGGTCCGGTCCGATCTTAGATTAAGAATGAACTCTGTATGCTTAGACT
716 TGTGCTACCGTAACCCTTGGTCCGGTCCGATCTTAGA-TAGGAATGAACTCTGTATGCTTAGACT
* * *
14225569 AGGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGTTCAGCCGGCC-GA
780 -GGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGC-TTCAGCCAGCCAAA
* *
14225633 GGGGCAGGATGCGCAAGCCGGAGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTG
843 GGGGCAGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTG
* * * * *
14225692 CTGCCGTAACCTTCAATCTGGTCCAATCTTAGACTTGGAATGAACTACGTATGCCTAAGCCAACT
1 CTGCCGCAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACC
* * * * *
14225757 GCCGAAACGAGCGGGCGGGCGGGTAGGCAGGCACTACGTCGGCCAGAGAAACGGGATGCGCAAGC
66 GACGAAACGAGCGGGCGGGCGAGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
*
14225822 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
131 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
14225887 TTTATGGCTTGTAAATTCATACAATGGTC-CTTTAAGCCTTCACGTGAAGTTTCATGACAAGATG
196 TTTATGGCTTGTAAATTCATACAATGGTCTCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
14225951 ACTCGTTTTCT-TTTCTTCAAGATTTTTGAAACTTTTTACGGTTCAGGA-TTTTTAAAATTTTTT
261 ACTCGTTTTCTATTT-TTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* * * * * * *
14226014 CGGAATGAGCTTTGGCCCCAAACTTGG-AAGATGTGATTCTTATATTTTTGTTGGCATGCACAAA
325 CAGAAGGAGTTTTGGCCCCAAACTTGGTAAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAA
*
14226078 AAAATCAGCTAAAAACTCGAAGTGTACAAGATGTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
390 AAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
14226143 AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAG
455 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14226208 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATA-AAGGGGCCAAGTACCAGCACCCATTGCACA
520 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGGCCAAGTACCAGCACCCATCGCACA
* * * **
14226272 TTATGTGCGCACACCCCCCCGGCCCCCCCGATTGTAGGAACCCCAATGCCGCCGGTCAGGTTCTC
584 TCATGTGCGCACACCCCCCC-GACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * * * *
14226337 CGACGGTGCTCCGACGATGGTGCCCCGGTGAAGAAAAATG-AGAAACCAGCACATGCCCGAGCCT
648 CGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCC
* *
14226401 AGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGATAGGGAATGAACTCCATATGCTTA
712 AGCATGTGCTACCGTAACCCTTGGTCCGGTCCGATCTTAGATA-GGAATGAA---C---T-C-T-
* * *
14226466 GACTGGGAATGAACTCCATATGCTTGGACTGGGAATGAACTCCGTATGCCTAATTCAACCCACGG
767 G--T----ATG--CT---TA------GACT-GGAATGAACTCTGTATGCCTAAGTCAACCCACGA
* ** * * * * *
14226531 AACGAGCGTGTAGGCTCTCAACCAGCCAAAGGGGCGGGATGCGTAAACCGGGGATCAATTGGGTC
814 AACGAGTGTGCGGGCT-TCAGCCAGCCAAAGGGGCAGGATGCGTAAGCCGGGGATCGATCGGGTC
* * * *
14226596 CACCTCTGCGTGCTACCAATCCTG
878 CCCCTCTACGTGCTGCCGATCCTG
* * * * *
14226620 CTGCGGCAACCCTCGATCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
1 CTGCCGCAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACC
* * * * * * *
14226685 GACGAAATGAGCGGACGGGCAAGCGGGC-GGTCATTACGCCGGCTAGAGAGACGGGATACGCAAG
66 GACGAAACGAGCGGGCGGGCGAGCAGGCAGG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * * *
14226749 CCATGTATCGATAGGGAGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGGATGCCAATACCAT
130 CCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* ** *
14226814 TTTTATGGCTTGTAAATTCATCCAATGGTC-CCCTAAGCCTTCGCGTGAAGTTTCATGGCAAGAC
195 TTTTATGGCTTGTAAATTCATACAATGGTCTCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14226878 GACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTG
260 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* * *
14226943 C-GAAGGGATTTTTGGCCCCAAACTTGGT-AGACGTGATCCTCGTATTTTTGTTGGCTTGCATAA
325 CAGAA-GGAGTTTTGGCCCCAAACTTGGTAAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AA
*
14227006 AAAAAATCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
388 AAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14227071 TCAGACACATTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTG
453 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * ** *
14227136 AGTTCTTGAGGTTCGATGAGGGATTCGGGGCCAATATAAGGGCCAAGTACCAGCTCCCATCGCAC
518 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * * *
14227201 ATCATGTGAGTACAACCCCCCCGGCCCCCTGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCT
583 ATCATGTGCGCAC-ACCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* *
14227266 CCAACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
647 CCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCC
14227331 AGCATGTGCT
712 AGCATGTGCT
14227341 GCCACAACCA
Statistics
Matches: 2221, Mismatches: 260, Indels: 133
0.85 0.10 0.05
Matches are distributed among these distances:
896 2 0.00
897 265 0.12
898 505 0.23
899 18 0.01
900 7 0.00
901 133 0.06
902 1 0.00
903 4 0.00
904 2 0.00
905 8 0.00
906 16 0.01
907 1 0.00
908 14 0.01
909 35 0.02
910 7 0.00
911 48 0.02
912 29 0.01
913 21 0.01
914 25 0.01
915 12 0.01
916 66 0.03
917 33 0.01
918 28 0.01
919 1 0.00
921 3 0.00
922 1 0.00
923 8 0.00
924 11 0.00
925 54 0.02
926 34 0.02
927 56 0.03
928 338 0.15
929 74 0.03
930 308 0.14
931 13 0.01
932 4 0.00
933 36 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (901 bp):
CTGCCGCAACCCTCAATCCGGTCCAATCTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGGCGAGCAGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCTCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
AGAAGGAGTTTTGGCCCCAAACTTGGTAAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAA
AAATCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCACACCCCCCCGACCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGA
CGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCA
TGTGCTACCGTAACCCTTGGTCCGGTCCGATCTTAGATAGGAATGAACTCTGTATGCTTAGACTG
GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCTTCAGCCAGCCAAAGGG
GCAGGATGCGTAAGCCGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTG
Found at i:14226473 original size:26 final size:26
Alignment explanation
Indices: 14226436--14226514 Score: 124
Period size: 26 Copynumber: 3.0 Consensus size: 26
14226426 CCGGTCCGAT
14226436 CTTAGA-TAGGGAATGAACTCCATATG
1 CTTAGACT-GGGAATGAACTCCATATG
14226462 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14226488 CTTGGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14226514 C
1 C
14226515 CTAATTCAAC
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
26 49 0.98
27 1 0.02
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14229679 original size:26 final size:26
Alignment explanation
Indices: 14229628--14229680 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14229618 CTGGTCTGAT
* * *
14229628 CTTAGACTGGGAATGAACTCTATATG
1 CTTAAACTGGGAATAAACTCCATATG
*
14229654 CTTAAACTGGGAATAAACTCCGTATG
1 CTTAAACTGGGAATAAACTCCATATG
14229680 C
1 C
14229681 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAAACTGGGAATAAACTCCATATG
Found at i:14231038 original size:904 final size:892
Alignment explanation
Indices: 14228325--14231435 Score: 3995
Period size: 904 Copynumber: 3.5 Consensus size: 892
14228315 TGCCATTTTT
* ** * * * * *
14228325 ATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTCGGCATG
1 ATTTTTTCGGAATTAGTTTTGTCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTTTTGGCATG
* ** *
14228390 CACAAAAAAATGCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
66 TACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-C
* * * *
14228455 CCATTTCAGACACTTTAATGCCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGAGG
130 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGG
* * * *
14228520 GTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCAT
195 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCAT
* * * *
14228585 CGCACATCATGTGCACACA-CCCCCCGGCTCCCCGATCGTCGGTACCCCAATGCCGTCGATCAGG
260 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATG-CGTCGGTCAGG
* * * * *
14228649 TTCTCCGGA-GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTG
324 -TCTCC-GACGATTCTCTGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGTC-G
* *
14228713 AGCCCAGCATGTGCTGCCGCAA--C-C---C---TC-G------GACT--G-AT---C-C--GAT
386 AGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCAATAT
* * * *
14228753 -CTTAGACAGGGAATGAACTCCGTATGCCTAAGTCAACCCAGGAAACGAGCGTGTGGGCCCTCAG
451 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * *
14228817 TCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC-GACTGAGTCCCCCTCTACGTGCTGCCGAT
516 CCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGAC-GGGTCCCCCTCTGCGTGCTGCCGAT
* * * * **
14228881 CCTGCTACCGTAACCCTCGGTGCGGTCTGATCTTAGATTGGGAATGAACTCCATATGCGTAAGGG
580 CCTACTACCGTAACCCTCGGT-CGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCC
* * * *
14228946 GATCGACGAAACGAGCGG-GCGGGCAGGCGGGTACTACACCGACCAGAGAGACGGGATGCGCAAG
644 AACCGACGAAACGA-CGGCG-GGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAA-
**
14229010 CTATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
706 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * * **
14229075 TTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCACATGAAGTTTGATGGCAAGACA
771 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATG
* * ** ** * *
14229140 ACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACAATTCAGGATTTTTTTAA
836 ACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTCAAGATTTTTTAAA
* * ** **
14229197 ATTTTTTCGAAAGGTT--TTTTGGCCCCAAACTTGGTATACGTGATTGTTGTATTTTTTTTGGCA
1 ATTTTTTCGGAA--TTAGTTTTGTCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTTTTGGCA
* * * * * *
14229260 TGCACAAAAATATTTAGCTAGAAACTCAAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTAT
64 TGTACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT-G
* * * * *
14229325 TCCCATTTCAGACACTTTAATGGCTACCGACAGTAAACCTGTAAAATCTCAATTCCTCTTTAAGG
128 TCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGG
* * *
14229390 GGGTGTCAGTTCTCAAGGTTTTATGAGGGATAGGGGGCCAAT-TAAGGGCCAAGTACCAGCACCC
193 GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCC
* * * * *
14229454 ACCGCACATCATGTGCGTACACCCCCCAGCCGCCCCCCCGATCGTCGAAATCCCAATGCTGTCGG
258 ATCGCACATCATGTGCGCACA-CCCCC--CCGGCCCCCCGATCGTCGGAACCCCAATGC-GTCGG
* ** * * *
14229519 TCAGGTTCTCCGGCGATGGTCCGGCGATGGTGCCCC-AGTGATGAAAAATACGGCACC-GACACA
319 TCAGG-TCTCCGACGATTCTCTGACGATGGTGCCCCGA-TGAAGAAAAATACGGCACCAG-CACA
14229582 TGTCGAAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
381 TGTCG-AGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACT
* * * * * * *
14229647 CTATATGCTTAAACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTACAGGC
445 CAATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * *
14229712 GCTCAACCGGCCAGAGGGG-AGGGATGCGTAAGCCGGGGATC-GACCGGGTCCCCCTCTGCATGC
510 GCTCAGCCGGCCAGAGGGGCA-GGATGCGCAAGTCGGGGATCGGA-CGGGTCCCCCTCTGCGTGC
* * * * *
14229775 TGCTGATCCTATTGCCGTAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
573 TGCCGATCCTACTACCGTAACCCTCGGT-CGGTCTGATCTTAGAATGGGAATGAACTCCGTATGC
* * * * *
14229840 CTAAGCTAACCAACGAAAC-A-AGC-GGGCGGGCGGGCACTTCACCGGCCAGAGAGACGGGATGC
637 CTAAGCCAACCGACGAAACGACGGCGGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGC
* *
14229902 GCAAGCCGCGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
702 GCAA-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAT
*
14229967 GCCATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
766 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
14230032 AGATGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTCAAGATTTTTTAAA
831 AGATGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTCAAGATTTTTTAAA
*
14230094 ATTTTTTCGGAATTAGTTTTGTCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTGTTGGCATG
1 ATTTTTTCGGAATTAGTTTTGTCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTTTTGGCATG
14230159 TACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
66 TACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
14230224 GCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTGAAATCTCAAATACTCTTTAAGGGG
131 -CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGG
* *
14230289 GTCTGAGTTCTCAAGGTTTGATGAGGGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCAT
195 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCAT
* *
14230354 CGCACATCATGTGCGCACACCCCCTTCGGCCCCCCAATCGTCGGAACCCCAATGTCGTCGGTCAG
260 CGCACATCATGTGCGCACACCCCC-CCGGCCCCCCGATCGTCGGAACCCCAATG-CGTCGGTCAG
* * *
14230419 GCTCTCCGACGATTCTCTGACGATGGTGCCCCGATGAAGAAAAATATGACACCAGCACATGCCCG
323 G-TCTCCGACGATTCTCTGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATG-TCG
**
14230484 AGCCCAGCATGTGCTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACT-AAGTA
386 AGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCAA-TA
** *
14230548 TGCTTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCA
450 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * *
14230613 GCCGCCCAGAGGGGCAGGATGCGCAAGTCAGGGATCGGTCGGGTCCCCATCTGCGTGCTACCGAT
515 GCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCCGAT
* *
14230678 CCTACTATCGTAACCCTCGGTCTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCC
580 CCTACTACCGTAACCCTCGGTC-GGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCC
* * * *
14230743 AACCGACGAAACGATCGTGCGTATGGGCGGGCGAGCACTACGCCGACCAGAAAGATGGGATGCGC
644 AACCGACGAAACGA-CG-GCG---GGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGC
* * * *
14230808 ACATCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGC
704 A-ACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
14230873 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
768 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
14230938 ATGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTCAAGATTTTTTAAA
833 ATGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTCAAGATTTTTTAAA
14230998 ATTTTTTCGGAATTAGTTTTGTCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTTTTGGCATG
1 ATTTTTTCGGAATTAGTTTTGTCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTTTTGGCATG
14231063 TACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
66 TACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-C
* * * *
14231128 CCATTTTAGACACTTTAATGGCTACTGGCAGCAAAGCTATAAAATCTCAAATTCTCTTTAAGGGG
130 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGG
* * *
14231193 GTGTGAGTTCTCGAGGTTTGATGAGGGCTAGGGGACCAATATAAGGGCCAAGTACCAGCATCCAT
195 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
14231258 CGCATATCATGTGCGCACACCCCCCCGGCCCCCCGATCG-CTGGAACCCCAA--CG-CTG-CCGG
260 CGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC-GGAACCCCAATGCGTCGGTCAGG
* * ** *
14231318 --T-C-A-GGTTCTCT-AGCAATGGTGCCCCGACAAAGAAAATTACGGCACCAGCACATGGTCGA
324 TCTCCGACGATTCTCTGA-CGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACAT-GTCGA
* *
14231377 GCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTGACCTTAGACTGGGAATGAACTC
387 GCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTC
14231436 CGTATGCCTA
Statistics
Matches: 1956, Mismatches: 216, Indels: 113
0.86 0.09 0.05
Matches are distributed among these distances:
871 39 0.02
872 201 0.10
873 5 0.00
874 5 0.00
875 103 0.05
877 1 0.00
878 1 0.00
881 1 0.00
884 2 0.00
885 1 0.00
891 5 0.00
892 98 0.05
893 3 0.00
894 3 0.00
895 5 0.00
896 317 0.16
897 427 0.22
898 46 0.02
899 2 0.00
900 7 0.00
901 171 0.09
902 2 0.00
903 23 0.01
904 485 0.25
905 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (892 bp):
ATTTTTTCGGAATTAGTTTTGTCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTTTTGGCATG
TACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATACTCTTTAAGGGGG
TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCGTCGGTCAGGTC
TCCGACGATTCTCTGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGTCGAGCCC
AGCATGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCAATATGCTTA
GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAGGGGCAGGATGCGCAAGTCGGGGATCGGACGGGTCCCCCTCTGCGTGCTGCCGATCCTACT
ACCGTAACCCTCGGTCGGTCTGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
GAAACGACGGCGGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGCGCAACCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
TATTTTTCACGATTTTAAAAACTTTTTACGGTTCAAGATTTTTTAAA
Found at i:14232410 original size:703 final size:691
Alignment explanation
Indices: 14230686--14232510 Score: 2302
Period size: 703 Copynumber: 2.6 Consensus size: 691
14230676 ATCCTACTAT
*
14230686 CGTAACCCTCGGTCTGGTCCGATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 CGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
14230751 AAACGATCGTGCGTATGGGCGGGCGAGCACTACGCCGACCAGAAAGATGGGATGCGCACA-TCGT
66 AAACGA----GC----GGGCGGGTGGGCACTACGCCGACCAGAGAGATGGGATGCGCA-AGCCGT
*
14230815 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTT
122 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* *
14230880 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
187 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTC
* * **
14230945 GTTTTCTATTTTTCACGATTTTAAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAA
252 ATTTTCTATTTTTCACGATTTTCAAAA-TTTTTACGGTTCGGGATTTTTTAAAA-----T-GGAA
* * * *
14231010 TTAGTTTTGTCCCCAAACTTGGTAGGCGTGATCCTTGTATTTTTTTTGGCATGTACAAAAAAATT
310 CTA-TTTTGTACCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGTACAAAAAAATT
* * *
14231075 TAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
374 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
14231140 CTTTAATGGCTACTGGCAGCAAAGCTATAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCTC
439 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * * *
14231205 GAGGTTTGATGAGGGCTAGGGGACCAATATAAGGGCCAAGTACCAGCATCCATCGCATATCATGT
504 GAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGT
* ** * *
14231270 GCGCACACCCCCCCGGCCCCCCGATCGCTGGAACCCCAACGCTGCCGGTCAGGTTCTCTAGCAAT
569 GCACACACCCCCCCGGCCCCCCGATCGCTAAAACCCCAACGCTGCCGGACAGGTTCTCGAGCAAT
* ** *
14231335 GGTGCCCCGACAAAGAAAATTACGGCACCAGCACATGGTCGAGCCCAGCATGTGCTGC
634 GGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAACCCAGCATGTGCTGC
* * *
14231393 CGCAACCCTCGGTCTGGTCTGACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
1 CGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * *
14231458 AAATGAGCGGGCGGGCGGGTGGGCACAACGCC-AGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
66 -AA--A-CGAGCGGGCGGGTGGGCACTACGCCGA-CCAGAGAGATGGGATGCGCAAGCCGTGGAT
* * * *
14231522 CGGTAGAGTGGTAGGTGGGTTTAGGCACATCTTCATCTTTCTGCATGCCAATGCCATTTTTCTGG
126 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
* *
14231587 CTTGTAAATTCATACAATGATCCCTTAAGCCTTCACATGAAGTTTTATGGCAAGACGACTCATTT
191 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTT
* * *
14231652 TCTATTTTTCATGATTTTCCAAATGTTTTCCGGTTCGGGATTTTTTAAAATTTTTTCGGAGGGAC
256 TCTATTTTTCACGATTTTCAAAAT-TTTTACGGTTCGGGATTTTTTAAAA-----T-GGA---AC
* **
14231717 T-TTTTG-ACCCAAACTTGGTAGATGTGATTGTTGTATTTTTCTTGGCAATCGTA-AAAAAAA-T
311 TATTTTGTACCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGC-AT-GTACAAAAAAATT
* *
14231778 CAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGATAATTTGAAAAAAGTGTCCCCATTTCAGACA
374 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
14231843 CTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
439 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
14231908 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACCAACACCCATCGCACATCATGT
504 GAGGTTTGATGAGGGATAGGGGACCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGT
* * * *
14231973 GCACACATCCCCCTGTCCCCCCGATCG-TCAAAACCCCAATG-TCGCCGGACAGGTTCTCCGACG
569 GCACACACCCCCCCGGCCCCCCGATCGCT-AAAACCCCAACGCT-GCCGGACAGGTTCT----CG
* * * *
14232036 ATGTTTCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCTCCAGCACATGCCCGAACCCAGCATG
628 A-G---C-A--ATGGTGCCCCGACAAAGAAAAATACGGCACCAGCACATGCCCGAACCCAGCATG
14232101 TGCTGC
686 TGCTGC
* * * * *
14232107 CGTAACCCTAGGTCTGATCCGATCTTAGACTGGAAATGAACTCCGTATGCCTAAACCAACCAACG
1 CGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
*
14232172 AAACGAGCGGGCAGGTGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATA
66 AAACGAGCGGGCGGGTGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATA
* *
14232237 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCTTTTTTTTATGGCTT
131 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC--ATTTTTATGGCTT
14232302 GTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCT
194 GTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCT
14232367 ATTTTTCACGATTTTTCGAAAATTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG-ACTGAGT
259 ATTTTTCACGA-TTTTC-AAAATTTTTACGGTTCGGGATTTTTTAAAA-----T-GGAACT-A-T
** * * * * *
14232431 TTTGGCCCCAAACATGGTAGATGTGATCCTTGTATTTTTTTTGGCACGCACAAAAACAATT-AGC
314 TTTGTACCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGTACAAAAA-AATTCAGC
*
14232495 TAAAAACTCAAAGTGT
378 TAAAAACTCGAAGTGT
14232511 CCCCATTTCA
Statistics
Matches: 984, Mismatches: 97, Indels: 68
0.86 0.08 0.06
Matches are distributed among these distances:
702 5 0.01
703 474 0.48
704 14 0.01
705 3 0.00
706 2 0.00
707 65 0.07
708 3 0.00
709 3 0.00
710 103 0.10
711 7 0.01
712 96 0.10
713 95 0.10
714 114 0.12
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.28
Consensus pattern (691 bp):
CGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGGCGGGTGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGCCGTGGATCGATA
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTAT
TTTTCACGATTTTCAAAATTTTTACGGTTCGGGATTTTTTAAAATGGAACTATTTTGTACCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGACCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCACACACCCCCCCGGC
CCCCCGATCGCTAAAACCCCAACGCTGCCGGACAGGTTCTCGAGCAATGGTGCCCCGACAAAGAA
AAATACGGCACCAGCACATGCCCGAACCCAGCATGTGCTGC
Found at i:14233424 original size:26 final size:26
Alignment explanation
Indices: 14233381--14233439 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
14233371 CTCTGTCTAG
14233381 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
14233405 TCTGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
14233431 TCCGTATGC
1 TCCGTATGC
14233440 CTAAGTCAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 25 0.81
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:14235371 original size:724 final size:716
Alignment explanation
Indices: 14233567--14235768 Score: 3018
Period size: 729 Copynumber: 3.0 Consensus size: 716
14233557 CGATCTGGTA
** * *
14233567 TGATCTTAGACTAAGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGCGGGC-AA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGA
* * ** * *
14233631 GCGAGCGGG--CTACGCC-AGCCAGAGAGACGGGATGCATAAGCCATGGATCGATGGGGTGGTAG
66 GCGGGCGGGCACTACGCCGA-CCAGAGAGATGGGATGCGCAAG-CGTGGATCGATAGGGTGGTAG
*
14233693 GCGGGTTTAGGCACATCTTCATATTTCTG-TGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
129 GTGGGTTTAGGCACATCTTCATATTTCTGATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
14233757 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
194 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * * * **
14233822 ATTTTCAAAACTTTTTGGGGTTTGAGATTTTTTAAAATTTTTTC-AGAAGGATTTTTTCCGCCAA
259 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGATTTTGGCC-CCAA
* * * * *
14233886 ACTTGGCAAACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCGAA
322 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TCAGCTAAAAACTCGAA
* *
14233951 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACGCTTTAGT-AGCTACTG
386 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGA-CTACTG
* * * *
14234015 GCTA-CAAACTTGTAAAATCCCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATGTGG
450 GC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-AGGTTTGATGAGG
* * * *
14234079 GATAAGGGGCCAATATAAGGGCCAAGCACCAGCACCCA-CTGCACATCTTGAT-CACACACCCCT
513 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATG-TGCGCACACCCCT
* * * * *
14234142 CCCGGCCCCCCCGATTGCCGGAACCCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCACC-AGC
576 CCCGACCCCCCCGA-TGCC-GAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGA-C
* *
14234206 GATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGCA
638 GATGGTGCCC-GGTGAAGAAAAAAGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCACA
* *
14234271 ACCCTCAGTCCGGTC
702 ACCCTCGGTCCAGTC
* * *
14234286 TGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACTAAACGAGCGGGCGAGCGGA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGC--G-GG-
* * *
14234351 CGTGCAGGCGGGCGGGCACCACGTCGGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAGGG
62 CG-G-A-GCGGGCGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGC-GTGGATCGATAGGG
*
14234416 TGGTAGGTGAGTTTAGGCACATCTTCATATTTCT-ATGTGCCAATGCCATTTTTATGGCTTGTAA
123 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGATGTGCCAATGCCATTTTTATGGCTTGTAA
* * * *
14234480 ATTCATACAATGGTCCCCTAAGCCTTCACGCGAAGTTTCATGGCAAGGCGAATCGTTTTCTATTT
188 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* *
14234545 TTCATGATTTTTGAAACTTTTTGCCGTTCGGGATTTTTTAAAATTTTTGT-GAAAGGATTTTTGG
253 TTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT-TCGAAAGGA-TTTTGG
* *
14234609 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATCCCGCTAAAAA
316 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT-CAGCTAAAAA
*
14234674 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGAC
380 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGAC
*
14234739 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCACAGTTTGAT
445 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-GGTTTGAT
* *
14234804 GAGAGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATCGCACAACATGTGCGCACA-CC
509 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * ** *
14234867 C-CCCGACCCCCCCGACTGCCGAAACCGCAATGCCGTCGATCAGGTTCTCCAACGATGCTCCGAT
574 CTCCCGACCCCCCCGA-TGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGAC
* * *
14234931 GATGGTGCCTCGGTGAAGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCACA
638 GATGGTGCC-CGGTGAAGAAAAAAGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCACA
14234996 ACCCTCGGTCCAGTC
702 ACCCTCGGTCCAGTC
* * *
14235011 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAACCGGCGAAACGAGTGGGCGGGCGGA
1 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGA
*
14235076 -CGGGCGGGCACTACGCCGACCAGAGAGATGGGATACGCAAGTCGTGGATCGATAGGGTGGTAGG
66 GCGGGCGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAG-CGTGGATCGATAGGGTGGTAGG
** *
14235140 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAAATGCCAAATTTGTGGCTTGTAAA
130 TGGGTTTAGGCACATCTTCATATTTCTG-ATG----TGCC-AATGCCATTTTTATGGCTTGTAAA
*
14235205 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTT
189 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
14235270 TCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCC
254 TCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGA-TTTTGGCC
*
14235335 CCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAACTC
318 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAACTC
* * * * *
14235400 GGAGTGTAGAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAC
383 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTAC
* *
14235465 TGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
448 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCAGGTTTGATGAG
14235530 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTG
512 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCT-
* * *
14235595 CCCGACCCTCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCAATGCTCCGACGA
576 CCCGACCCCCCCGAT-GCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGA
*** * * * *
14235660 TGGTGCCCCAACGAAGAAAAATA-CGCCACCAGCACATGCCCAAGCACAACATGTGCTACCACAA
640 TGGTG-CCCGGTGAAGAAAAA-AGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCACAA
*
14235724 ACCTCGGTCCAGTC
703 CCCTCGGTCCAGTC
**
14235738 TGATGGTAGACTGGGAATGAACTCCGTATGC
1 TGATCTTAGACTGGGAATGAACTCCGTATGC
14235769 TTAGACTGGG
Statistics
Matches: 1313, Mismatches: 129, Indels: 74
0.87 0.09 0.05
Matches are distributed among these distances:
717 84 0.06
718 1 0.00
719 56 0.04
720 1 0.00
721 3 0.00
722 4 0.00
723 165 0.13
724 221 0.17
725 159 0.12
726 21 0.02
727 157 0.12
728 29 0.02
729 403 0.31
730 9 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (716 bp):
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGGA
GCGGGCGGGCACTACGCCGACCAGAGAGATGGGATGCGCAAGCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGATTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGACTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAGGTTTGATGAGGGATAGGGG
GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCCGACCCCC
CCGATGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCGGT
GAAGAAAAAAGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCACAACCCTCGGTCCAGT
C
Found at i:14235780 original size:26 final size:26
Alignment explanation
Indices: 14235744--14235794 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14235734 AGTCTGATGG
14235744 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
14235770 TAGACTGGGAATGCACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14235795 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:14236668 original size:26 final size:26
Alignment explanation
Indices: 14236639--14236707 Score: 120
Period size: 26 Copynumber: 2.7 Consensus size: 26
14236629 CCAGTCTGAT
14236639 CTTATACTGGGAATGAACTCCATATG
1 CTTATACTGGGAATGAACTCCATATG
14236665 CTTATACTGGGAATGAACTCCATATG
1 CTTATACTGGGAATGAACTCCATATG
* *
14236691 CTTAGATTGGGAATGAA
1 CTTATACTGGGAATGAA
14236708 GTGTATATGG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30
Consensus pattern (26 bp):
CTTATACTGGGAATGAACTCCATATG
Found at i:14237088 original size:923 final size:923
Alignment explanation
Indices: 14234995--14237588 Score: 3269
Period size: 923 Copynumber: 2.8 Consensus size: 923
14234985 GTGTTGCCAC
* * ** * * * ***
14234995 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAACCGGCGAAA
1 AACCCTCAGTCCGGTCTAATCTTACACTGGGAATGAACTCCATATGCCTAAGCCAACTAACGAAA
** * * ** * *
14235060 CGAGTGGGCGGGCGGAC-GGGCGGGCACTACGCCGACCAGAGAGATGGGATACGCAAGTCGTGGA
66 CGA----GCGGGCGGACAAAGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGA
* * * *
14235124 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAAATGCCAA
127 TCGATAGCGTGGTACGTGAGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCC--AT-----
* * *
14235189 ATTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
185 TTTTATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
14235254 ACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTC
250 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTAAAATTTTTTC
* * *
14235319 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCATGCACAAAAA
314 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAA
* * * * * *
14235384 AA-TCAGCTAAAAACTCGGAGTGTAGAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTA
379 AAGTCAGCTAAAAAATCGAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
14235448 GACACTTTAATGGCTACTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
444 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
** * * * *
14235513 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
509 TCTCAAGGTTTGATGAAGGATAGGGGGCCAATACAAGGGCCAAGTACCA-AACCCATAGCACATC
* * * * * *
14235578 ATGTGCGCACACCCCTGCCCGACCCTCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTC
573 ATGTGCACACA-CCC-GCCCGACCC-CCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTC
* * * * * * * *
14235643 CGGCAATGCTCCGACGATGGTGCCCCAACGAAGAAAAATACGCCACCAGCACATGCCCAAGCACA
635 TGACGATGCTCCGACGATGGTGCCCCAACAAAGAAAAATGCGGCACCAGCACAAGCCCGAGCACA
* * * *
14235708 ACATGTGCTACCACAAACCTCGGTCC-A---G-TC-T-GA-T--G---G-------TA-G-----
700 GCATGTGCTGCCACAACCCTCGATCCGATCCGATCATAGACTAGGAATGAACTCCATATGCTTAT
* * * *
14235747 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGCACTCCGTATGCCTAAGTCAACCCATGAA
765 ACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
* *
14235812 ATGAGCCTGTGGCGTTCAGCCGACCAAAGGGGCGGGATGAGCAAGCCGGGGATCGATCGGGTCCC
830 ACGAGCCTGGGGCGTTCAGCCGACCAAAGGGGCGGGATGAGCAAGCCGGGGATCGATCGGGTCCC
*
14235877 CCTCTGCGTGCTGTCGATCCTGATATCGT
895 CCTCTGCGTGCTGTCGATCCTGATACCGT
* * *
14235906 AACCCTCAGTCCGGTCTAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACTAACGAAA
1 AACCCTCAGTCCGGTCTAATCTTACACTGGGAATGAACTCCATATGCCTAAGCCAACTAACGAAA
* * *
14235971 TGAGTGGGCGGGCAAAGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGA
66 CGAGCGGGCGGACAAAGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGA
* **
14236036 TAGCGTTGTACGTGAGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTATGGCTT
131 TAGCGTGGTACGTGAGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* *
14236101 GTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCT
196 GTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * * *
14236166 ATTTTTCATGATTTTTTAAGCTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTT
261 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGA-TTTTTAAAATTTTTTCGGAAGGAGTTT
* * * *
14236231 TGGTCCCAAAGTTGGTAGACGTGATCCTTTTATTTTTCTTGGCATGCACAAAAAAAGTCTGCTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAAGTCAGCTAA
* *
14236296 AAAATTGAAGTGTACAAGATTTCGTGACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAAT
390 AAAATCGAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
14236361 GGGTAC-GGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* *
14236425 GATGAAGGATAGGGGGCCAGTACAAGGGCCAAGTACCAGCACCCATAGCACATCATGTGCACACA
520 GATGAAGGATAGGGGGCCAATACAAGGGCCAAGTACCA-AACCCATAGCACATCATGTGCACACA
** * *
14236490 CCC-CCCGACCCCCTGATCGCCGGAACCCCAATGCTGCCGATCAGGTTCTCTGACGATGCTCCGG
584 CCCGCCCGACCCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTGACGATGCTCCGA
* * *
14236554 CGATGGTGCCCCAACAAAGAAAAATGTGGCACCAGTACAAGCTCGAGC-CTAGCATGTGCTGCCA
649 CGATGGTGCCCCAACAAAGAAAAATGCGGCACCAGCACAAGCCCGAGCAC-AGCATGTGCTGCCA
* * * * * *
14236618 TAACCCTCGGTCC-AGTCTGATCTTATACTGGGAATGAACTCCATATGCTTATACTGGGAATGAA
713 CAACCCTCGATCCGA-TCCGATCATAGACTAGGAATGAACTCCATATGCTTATACTGGGAATGAA
* * ** * *
14236682 CTCCATATGCTTAGATTGGGAATGAAGTGTATATGGCTAAGTCAACCCACGAAACGAGCGTGCGG
777 CTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCCTG-GG
* * * * * *
14236747 GCGTTCAGCCGACCAAAGGGGCGGGATGCGCAAGCTGGGGATTG-GCTGGGTCCCCTTCTGTGTG
841 GCGTTCAGCCGACCAAAGGGGCGGGATGAGCAAGCCGGGGATCGATC-GGGTCCCCCTCTGCGTG
* * *
14236811 CTGTGGATCCTGCTGCCGT
905 CTGTCGATCCTGATACCGT
* * *
14236830 AACCCTCGGTCCGGTCTGATCTTACACTGGGAATGAACTCCATATGCCTAAGCCAAAC-AATGAA
1 AACCCTCAGTCCGGTCTAATCTTACACTGGGAATGAACTCCATATGCCTAAGCC-AACTAACGAA
** *
14236894 ACGAGCGGGCGGAC-GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
65 ACGAGCGGGCGGACAAAGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCG
* * * * **
14236958 ATAGGGTGGTAGGTGGGTTTATGCTTATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCT
130 ATAGCGTGGTACGTGAGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCT
* * *
14237023 TGTAAATTCATAGAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTC
195 TGTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * *
14237088 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTCAAATTTTTTTGGATGGAGTTT
260 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTAAAATTTTTTCGGAAGGAGTTT
* *
14237153 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
325 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAAGTCAGCTAA
* *
14237218 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
390 AAAATCGAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
14237283 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
455 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* * * *
14237348 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAAACCCATCGCACATCATGTGCGCACAC
520 GATGAAGGATAGGGGGCCAATACAAGGGCCAAGTACCAAACCCATAGCACATCATGTGCACACAC
** * * * * *
14237413 CCGCTGGCCCCCCCAATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCCGAT
585 CCGCCCGACCCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTGACGATGCTCCGAC
*** * *
14237478 GATGGTGCCCTGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCACAGCATGTGCTGCCACA
650 GATGGTGCCCCAACAAAGAAAAATGCGGCACCAGCACAAGCCCGAGCACAGCATGTGCTGCCACA
14237543 ACCCTCGATCCGATCCGATCATAGACTAGGAATGAACTCCATATGC
715 ACCCTCGATCCGATCCGATCATAGACTAGGAATGAACTCCATATGC
14237589 CTAAGTCAAC
Statistics
Matches: 1467, Mismatches: 180, Indels: 60
0.86 0.11 0.04
Matches are distributed among these distances:
896 1 0.00
897 107 0.07
898 8 0.01
900 3 0.00
901 299 0.20
902 73 0.05
903 1 0.00
904 1 0.00
905 1 0.00
906 2 0.00
907 9 0.01
908 88 0.06
910 1 0.00
911 58 0.04
917 2 0.00
918 1 0.00
922 174 0.12
923 496 0.34
924 139 0.09
925 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (923 bp):
AACCCTCAGTCCGGTCTAATCTTACACTGGGAATGAACTCCATATGCCTAAGCCAACTAACGAAA
CGAGCGGGCGGACAAAGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGA
TAGCGTGGTACGTGAGTTTAGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTT
GTAAATTCATACAATCGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTAAAATTTTTTCGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAAGTCAGCTAAA
AAATCGAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
ATGAAGGATAGGGGGCCAATACAAGGGCCAAGTACCAAACCCATAGCACATCATGTGCACACACC
CGCCCGACCCCCCAATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCTGACGATGCTCCGACG
ATGGTGCCCCAACAAAGAAAAATGCGGCACCAGCACAAGCCCGAGCACAGCATGTGCTGCCACAA
CCCTCGATCCGATCCGATCATAGACTAGGAATGAACTCCATATGCTTATACTGGGAATGAACTCC
ATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCCTGGGGCGTT
CAGCCGACCAAAGGGGCGGGATGAGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCG
ATCCTGATACCGT
Found at i:14239248 original size:26 final size:26
Alignment explanation
Indices: 14239219--14239271 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14239209 CCGGTCCGAT
14239219 CTTAGACTCGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
*
14239245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTCGGAATGAACTCCGTATG
14239271 C
1 C
14239272 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTCGGAATGAACTCCGTATG
Found at i:14240131 original size:26 final size:26
Alignment explanation
Indices: 14240102--14240154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14240092 CTGATCTGAT
14240102 CTTAGACTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
* *
14240128 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
14240154 C
1 C
14240155 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:14241034 original size:26 final size:26
Alignment explanation
Indices: 14241005--14241057 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14240995 CAGGTCTGAT
*
14241005 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14241031 CTTAGATTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14241057 C
1 C
14241058 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14241933 original size:26 final size:26
Alignment explanation
Indices: 14241897--14241949 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14241887 CTGGTCCAAC
14241897 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14241923 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14241949 C
1 C
14241950 CTAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14242830 original size:26 final size:26
Alignment explanation
Indices: 14242801--14242853 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14242791 CCGGTCCGAT
14242801 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14242827 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14242853 C
1 C
14242854 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14242830 original size:904 final size:897
Alignment explanation
Indices: 14238449--14245077 Score: 7699
Period size: 891 Copynumber: 7.5 Consensus size: 897
14238439 AGCGTGCATC
* ** * * *
14238449 CCGGGGATCGGTC-GAGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGCAACCCTC-GATTCGG
1 CCGGGGATCGGTCAG-GTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCAG-TCCGG
* ** *
14238512 TCTGATCTTAGATTGGGAATGAACTTTGTATGCCTAAGCCAACCGAC-AACACGAGTGGGTGGGC
64 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA-ACGA--GGG-CGGC
* * *
14238576 GGGCGGGCACTACGCCAGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTG
125 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * * *
14238641 GGTATAGGCACAGCTTCTTATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
190 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
14238706 TGGTCCCTTAAGCCTTCATGTCAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTT
255 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCATGATTT
* * * * *
14238771 TTGAAACTTTTTACGGTTGGGGATTTTTTAAAATTTTTTTGAAAGGA-TTTTTGACCC---C---
320 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
14238829 --A-A----A--CTTGTATTTTTGTTGGCATGCACAAAAAACTTCAGCTAAAAACTCGAATTGTA
385 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
14238885 CAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATGGCCACTGGGAGCA
450 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
14238950 AAACTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGG
515 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
** *
14239015 GGCCAATATAACAGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCAACCCCGG-CC
580 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC--CCCCGGCCC
* * * *
14239079 CCCCGATCGTC-AGAACCCTAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
643 CCCCGATCGTCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* ** ** * * * * * * *
14239143 CTGGGTGAAGAAAAATATGGTGCCAGCACATGCTCGAGCCAAACATGCGCTGCCGCAACCCCCGG
708 C-CGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGG
*
14239208 TCCGGTCCGATCTTAGACTCGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
772 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * **
14239273 TAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAACCGGCTAGAGGGGCAGAATGTACAAG
837 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC-GGATGCGCAAG
* * * * *
14239335 CCGGGGATCGGCCGGGT-CCCC-CT-C-TG----C-ATGCTGCTG---CAACCCTCGGTCCGATC
1 CCGGGGATCGGTCAGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTC
* ** *
14239388 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAACG-GGCGGGTGG
66 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGCGGCGGGCGG
* *
14239452 GCACTACGCCGGCGAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTA
131 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* **
14239517 GGTACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
196 GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
14239582 CTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
261 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCATGATTTTTGAAA
* ** * * *
14239647 CCTTTCGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAG-TTTGGCCCCAAACTTGGCAGAC
326 CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
14239711 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAAAT
391 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
14239776 TTTGTGACCATTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTC
456 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * * * * **
14239841 TAAAATCTCAAATGCTCCTTAAGGGGGGAGTGACTTTTCAAGGTTTGATGTGGGATAATGGGCCA
521 TAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * ** *
14239906 ATATAAGGCCCAAGTACCAGCACCCATCGCTCATGATGAGCGTTCA-CCCCCTGGCCCCCCCGAT
585 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
* * ** * * * *
14239970 CG-CCAGAACCCCAATGCCGTCGGTCAGGTTCTTTGACGATACTCCGGTGATGGTGCCCCGACAA
650 CGTCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGA
* * * * * *
14240034 AGAAAAATGTGGCACCAGCACATGTCCGAGCCCAGCATGTGCTATCGTAACCCTCGGTCTGATCT
715 AGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCC
* * * *
14240099 GATCTTAGACTGAGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTCAA
780 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
14240164 CCCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGCTGGATGTGCAAG
845 CCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC-GGATGCGCAAG
* * * * *
14240218 CCGGGGATCGGTCGGGTCCCCCTATACGTGCTGCCGATCCTGCT-CCACAACCCTCATTCTGGTC
1 CCGGGGATCGGTCAGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTC
* *
14240282 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATTAATAGGCGGGCGGG
66 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-----AA-ACGAGGGC-GG
* * * * * *
14240347 CGGGCGGGCACTATGCCGGCCAGAGAGATGGGATACGCAAGCCATGGATAGATAGGGTGGCAGGT
124 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* ** *
14240412 GGGTTTTGGCACATCTTCATATTTCTATGTGCCAATGCCACTTTTATGGCTTGTAAATTCATACA
189 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
14240477 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCGATTTCTATTTTTCATGATT
254 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCATGATT
** * ***
14240542 TTCAAAACTCTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGCTTTTTTGGCCCCAAACTT
319 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* ** *
14240607 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAATTCAATTACAAACTCGAAGTGT
384 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
14240672 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTTCAGACACTTTAATGGCTACTGGCAGC
449 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
14240737 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTCGATGAGGGATAGG
514 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * *
14240802 GGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCGCAGACACCCCCGACCCC
579 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * *
14240867 CCCGATCGTCGA-AACCCCAATGCCGCCAGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCCC
644 CCCGATCGTCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
** * * * * *
14240931 CGACGAAGAAAAATGCGGCACCAACACATGCCCGAGCCTAGGACGTGCTACCGTAACCCTGGGTC
709 CGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTC
* * * * *
14240996 AGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATTAACTCCGTATGCCTA
774 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * *
14241061 AGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGACCAAAGGGGTCGGATGCGCAAG
839 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGG-CGGATGCGCAAG
* * * * * * ** * **
14241121 ACGGGGATCGGCCAGGTGCCCCTTTGCGTGCTACCGATCCTGCTGCCACACCCCTTGGCCCAATC
1 CCGGGGATCGGTCAGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTC
* * **
14241186 TAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-----GCTAGCGG
66 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGCGGCGGGCGG
* * *
14241246 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTCGGTGGGTTTA
131 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
14241311 GGCACATCTTCATATTTCCACGA-GCGAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTC
196 GGCACATCTTCATATTTCTAC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
14241374 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA-TTTTCTATTTTTCACGATTTTTGA
260 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-AGTTTTCTATTTTTCATGATTTTTGA
* * * *
14241438 AATTTTTTATGGTTTGGGATTTTTTAAAATCTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
324 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
14241503 ACGTGAT-CTCTGTATTTTTGTTGGCTTGCACAAAAAACTTCAGCTAAAAACTCGAAGTGTACAA
389 ACGTGATCCT-TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
14241567 GATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTACT-GCAGCAAAC
453 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
14241631 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
518 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
**
14241696 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCTTACACCCCACCCGGCCCCCCC
583 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCGGCCCCCCC
* * * ** * *
14241761 GATCGCCG-GAACCCCAATGCCGCTGGTCAGGTTTTTTGGGCGAAGCTCTGGCGATGGTGCCCCG
647 GATCGTCGAGAACCCCAATGCCGCCGGTCAGG-TTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
** * * * * * * ** ** *
14241825 GTGAAGAAAAATACGACACCAGCACAAGCCCAAGCCTAGCATGTGCTGCCACAACCCTCCTTCTG
711 ACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCG
* *
14241890 GTCCAACCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
776 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
14241955 TGAACCCATGAAACGAGCGTGCGGGTGCTGAACCGGCCAGAGGGGCGGGATGCGCAAG
841 TCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC-GGATGCGCAAG
* * * * *
14242013 TCGGAGATCGGTCAGGTCCCCCTCCACGTGCTACCGATCCTACTGCCACAACCCTCAGTCTGGTC
1 CCGGGGATCGGTCAGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTC
* *
14242078 TGATCTTAGATTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAACGAG
66 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GG-G--CG-G
* * * *
14242143 AGGGCGGGCACTGCACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGT
124 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
14242208 GCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
189 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
14242273 ATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAGACGAGTAGTTTTCTATTTTTCACGATT
254 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCATGATT
**
14242338 TTTGAAACTTTTTACTCTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAATC
319 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAA-C
* * * *
14242403 TT-TTAGACGTGATCCTTGTATTTTTTTTGGAATGCACAAAAAAATTCAGCTAAAAAATCGAAGT
382 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
14242467 GTACAAGATTTTGTGACCATGTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCA
447 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
14242532 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGATGTTTGATGAGGGATA
512 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * *
14242597 GGGGGCCAA-ATAAGGGCCAAGTACCAGCACCCATCACATATCATGTGCGCATACCCCCCCAGCC
577 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * * *
14242661 CGCACGATCG-CGAGAACCGCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
642 CCCCCGATCGTCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
* * *
14242725 CCTGACGAAGAAAAATATGGCACCAACACATGCCCGAGCCCAGCATGTGCTACCGTGACCCTCGG
707 CCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGG
*
14242790 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCC
772 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * *
14242855 TAAGTCAACCCACGAAACGAGCGTGC--G-G---AA----TC-GA---TCGGGT-C-C---
837 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGATGCGCAAG
* * ** * * * * * * * *
14242897 CC----CTC--T-ACGTGCTGCCGCAAC--CCT--CGATCCAGTCTG-----A-TCTTAGACAGG
1 CCGGGGATCGGTCAGGT-CCCCCTCTACGTGCTACCGATCCTG-CTGCCACAACCCTCAGTC-CG
** * * * ** * * ** * *
14242945 GAATGAACTCCATA-TGCCTAA-GCCAA--CCG-ATG--AAATG---AGCG--GGTACTATGGCG
63 GTCTGATCT-TAGACTG-GGAATG--AACTCCGTATGCCTAA-GCCAACCGACGAAACGAGGGC-
* ** ** **
14242998 GGCGGGC--ACTACGCCGACC--AAAGAGACGA-GACA--CGCAAGCCGTGGATCGATAGGGTGG
122 GGCGGGCGGGC-ACTACG-CCGGCCAGAGA-GACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* ** *
14243056 TAGGTGGGTTTTGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGTTTGTAAATTC
184 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * *
14243121 ATACAAAGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGGCTCGTTTTCTATTTTTCA
249 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCA
* * * * ** * *
14243186 TGATTTTCGAAACTTTTTACAGTTCAGGATTTTTAAAAATTTTTTTTGAAGGATTTTTGGCCCTA
314 TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
14243251 AACTTGGTAGACGTGAT-CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAGCTTGA
379 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
14243315 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTA
444 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
14243380 GCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAAGG
509 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
14243445 ATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCTATCGCACATCATGTGTGCACACCCCCCCG
574 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
* ** * * *
14243510 GCCCCTCCGATCACCG-GAACCCCAATGCCGTCGGTCAGGTTCTCTGGCGATGCTCCGACGATGG
639 GCCCCCCCGATCGTCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGG
** *** * * *
14243574 TGCCCCGGGGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGCCGCAACCCT
704 TGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCT
* * * *
14243639 CTGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCTGTAT
769 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * * * * * * * * *
14243704 GCCTAAGTCAACCCTCGAAACGAGTGTACGGGCGTTCAGCCAGCCAGACGAGCGGGAAGCGTAAG
834 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC-GGATGCGCAAG
* * * * * * * *** * * * *
14243769 CCGAGGATAGGTC-GATTCCCCCGCTGCATTCCGTCGATCTTGCTACCATAACCCTCGGTCCGGT
1 CCGGGGATCGGTCAG-GTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGT
* * *
14243833 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAACGA-----GTGGGCT
65 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGCGGCGGGCG
***
14243893 GGCACTACGCCAATCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
130 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
14243958 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
195 AGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
14244023 CCTTAAGCCTTCAAGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
260 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCATGATTTTTGAA
* * * ** *
14244088 ACTTTTTACGATTCAGGATTTTTTAAAATTCTTTCAAAAGGAGTTTTTGCCCCAAACTTGGTAGA
325 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
14244153 CGTGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAATGTACAGGA
390 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
14244218 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTACTGGCAGCAAACCT
455 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
14244283 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CA
520 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
14244347 ATATAAGGGCCAAGTACCAGCACCCATCCCACATAATGTGCGCACACCCCCCCGACCCCCTCGAT
585 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
* * * * * * * **
14244412 CG-CTG-GAACCCCAATGTCGTCGGTCAGGTTCTCTGGCGATGCCCCGACCATGGTGCACCGGTG
650 CGTC-GAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG
** * * * * * * * *
14244475 AAGAAAAATGCGGCACCAGCACATTCTCAAGCCAAACATGTGCTGCCGCAACCC-CTGGTCTGGT
714 AAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTC-GGTCCGGT
* * *
14244539 CCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTTAGTC
778 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
14244604 AACCCACAAAATGAGCGTGCAGGCACTCAGCCGACCAGAGGGGCGGGATGCGCAAG
843 AACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGC-GGATGCGCAAG
* * ** * * ** *
14244660 CCGGGGATCGGCCAGGTCCCCCTCTACATGCTGGCGGTCCTACTGCCACAACCCTCAGTCTAGTT
1 CCGGGGATCGGTCAGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTC
* * * * * *
14244725 TGACCTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACTGAAGAAACAAGTGGGCGGGCGGG
66 TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--GAGGGC-GGC--G
* * * * *
14244790 AGTGCGGGAACTACACCGGCCAGAGAGATGGGATGCGCAAGCCGTTGATCGATATGGTGGTAGGT
126 -G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
** *
14244855 GGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATCGCTTGTAAATTCATACA
189 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
14244920 ATGATCCCTTAAGCCTTCACGTGGAGTTTCACGGCAAGACGACCT-GTTTTCTATTTTTCACGA-
254 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA-CTAGTTTTCTATTTTTCATGAT
* * *
14244983 TTTTCAAACTTTTTACGGTTTGGGATTTTTTAAAATTTCTTCGGAAGGAGTTTTGGCCCCAAACT
318 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
14245048 T-GAAGACGTAATCCTTGTATTTTTGTTGGC
383 TGGTAGACGTGATCCTTGTATTTTTGTTGGC
14245078 CCCAAACAAC
Statistics
Matches: 4899, Mismatches: 681, Indels: 311
0.83 0.12 0.05
Matches are distributed among these distances:
851 178 0.04
852 252 0.05
853 197 0.04
854 1 0.00
855 9 0.00
856 5 0.00
857 8 0.00
858 2 0.00
859 1 0.00
860 1 0.00
862 1 0.00
863 6 0.00
865 3 0.00
866 1 0.00
867 4 0.00
868 2 0.00
869 8 0.00
870 242 0.05
871 4 0.00
872 5 0.00
873 1 0.00
874 64 0.01
875 6 0.00
876 3 0.00
877 10 0.00
878 16 0.00
879 2 0.00
880 3 0.00
881 2 0.00
882 8 0.00
883 183 0.04
884 64 0.01
885 144 0.03
886 100 0.02
887 18 0.00
888 8 0.00
889 13 0.00
890 124 0.03
891 869 0.18
892 551 0.11
893 7 0.00
894 60 0.01
898 4 0.00
899 5 0.00
900 2 0.00
901 28 0.01
902 350 0.07
903 603 0.12
904 312 0.06
905 172 0.04
906 156 0.03
907 81 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CCGGGGATCGGTCAGGTCCCCCTCTACGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTC
TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGGGCGGCGGGCGG
GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
GGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTAGTTTTCTATTTTTCATGATTTTTGAAA
CTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATC
GTCGAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAA
GAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGATGCGCAAG
Found at i:14243682 original size:26 final size:26
Alignment explanation
Indices: 14243653--14243705 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14243643 CCGGTCTGAT
14243653 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14243679 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14243705 C
1 C
14243706 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14244580 original size:26 final size:27
Alignment explanation
Indices: 14244544--14244601 Score: 100
Period size: 26 Copynumber: 2.2 Consensus size: 27
14244534 CTGGTCCAAT
14244544 CTTAGACTGGGAATGAACTCCGTATG-
1 CTTAGACTGGGAATGAACTCCGTATGC
*
14244570 CTTAGACTGGGAATGAACTCTGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
14244597 CTTAG
1 CTTAG
14244602 TCAACCCACA
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 25 0.83
27 5 0.17
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (27 bp):
CTTAGACTGGGAATGAACTCCGTATGC
Found at i:14247930 original size:45 final size:45
Alignment explanation
Indices: 14247878--14248021 Score: 141
Period size: 45 Copynumber: 3.2 Consensus size: 45
14247868 GTACGGGCAC
14247878 TTGCCTCGACTGCCATCGGCACAAGCTGGGCCCTAGTGTGGGCGG
1 TTGCCTCGACTGCCATCGGCACAAGCTGGGCCCTAGTGTGGGCGG
* * * * *
14247923 TTACCTCGA-TCACCATTGGCACATGCT-GGCCCTTG-GTGCAGGCGG
1 TTGCCTCGACT-GCCATCGGCACAAGCTGGGCCCTAGTGTG--GGCGG
* * ** **
14247968 TTGCCTTGACTGCCATCGGCAGAATATGGGCCCTAGTGCAGGCGG
1 TTGCCTCGACTGCCATCGGCACAAGCTGGGCCCTAGTGTGGGCGG
14248013 TTGCCTCGA
1 TTGCCTCGA
14248022 TCACCAATAA
Statistics
Matches: 76, Mismatches: 17, Indels: 12
0.72 0.16 0.11
Matches are distributed among these distances:
43 3 0.04
44 8 0.11
45 56 0.74
46 8 0.11
47 1 0.01
ACGTcount: A:0.15, C:0.30, G:0.32, T:0.23
Consensus pattern (45 bp):
TTGCCTCGACTGCCATCGGCACAAGCTGGGCCCTAGTGTGGGCGG
Found at i:14253819 original size:45 final size:45
Alignment explanation
Indices: 14253757--14254564 Score: 475
Period size: 45 Copynumber: 18.0 Consensus size: 45
14253747 AGAATATGGC
* * * * *
14253757 CCCTGGTGTGGGCGATTACATCAAACACCATCGACACAAGCTGGG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTGGG
* * * * *
14253802 CCCTGGTGCGGGCGATTACCTTGAACACCATTGGCACAAGCT-GG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTGGG
* ** * * * **
14253846 CCCATGGTGTGGGCTCTTGCCTCGACCACCATCGACACACGTTGAA
1 CCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTGGG
* * * *
14253892 CCCTGGTGTGGGCGGTTGCCTCGAGCACCATCGGCACACA-CTAGG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACA-AGCTGGG
* * * *
14253937 CCCTGATGCGGGTGGTTGCCTTGAACACCATC-AGCACACA-CTAGG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGA-CACA-AGCTGGG
* * * * * * *
14253982 CCCCGTTACGGGTGGTTACCTCGATCACCATCGACACACGCTGGG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTGGG
* * * * * *
14254027 CTCTGGTACGGGCGGTTACCTC-AAGCACTATCGGCACACGCTGGG
1 CCCTGGTGCGGGCGGTTGCCTCGAA-CACCATCGACACAAGCTGGG
* * ** * * * * * *
14254072 CCTTGGTACGAACGATTG-CTCCGAGCACCATCGGCATAAG-TTGA
1 CCCTGGTGCGGGCGGTTGCCT-CGAACACCATCGACACAAGCTGGG
* ** * * * *
14254116 CCCTTGGTGCAGGCTCTTGCCTCGACCACCATCGACAAAAGATGGT
1 CCC-TGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTGGG
* * * *
14254162 CCCTGGTGTGGGCGGTTACGTCGAACACCATCGACACACGCTGGG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTGGG
* * * * * *
14254207 CCCTGGTACGAGCGGTTGCCTCGATCACCATTGGCACACGCTGGG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTGGG
* * * * * **
14254252 CCCTGCTACGGGTGGTTGCCTCGAATACCATCGATACAAGC-CAG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTGGG
** * *
14254296 CCCTTGGTGCGGGCTCTTGCCTC-AACCACCATCGACACACGTTGGG
1 CCC-TGGTGCGGGCGGTTGCCTCGAA-CACCATCGACACAAGCTGGG
* * * * *
14254342 CCCTGGTACGGGCGATTGCCTCGAGCACTATCGGCACACA-CTGGG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACA-AGCTGGG
* ** * * * *
14254387 CCCTAGTATGGGTGGTTGCCTCGAACACCATCGGCACACGCTGAG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTGGG
* * * *
14254432 CCCTGTTGGGGGCGGTTGCCTCGATCACCATCGACACACGCTGGG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTGGG
* ** * * * * * *
14254477 CCCTGGTACAAGCGGTTGCCTCGAGCACCATTGGCACACGTTAGG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTGGG
* * * * * * *
14254522 CCTTGGTACGAGCAGTTGCTTCGAGCACCATCGGCACAAGCTG
1 CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTG
14254565 ACCCTTAGTG
Statistics
Matches: 590, Mismatches: 155, Indels: 36
0.76 0.20 0.05
Matches are distributed among these distances:
44 18 0.03
45 555 0.94
46 17 0.03
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.20
Consensus pattern (45 bp):
CCCTGGTGCGGGCGGTTGCCTCGAACACCATCGACACAAGCTGGG
Found at i:14253965 original size:135 final size:135
Alignment explanation
Indices: 14253757--14254569 Score: 629
Period size: 135 Copynumber: 6.0 Consensus size: 135
14253747 AGAATATGGC
* * * * * *
14253757 CCCTGGTGTGGGCGATTACATCAAACACCATCGACACAAGCTGGGCCCTGGTGCGGGCGATTACC
1 CCCTGGTGTGGGCGGTTACCTCAAACACCATCGACACACGCTGGGCCCTGGTACGAGCGATTGCC
* * * ** * *
14253822 TTGAACACCATTGGCACAAGCT-GGCCCATGGTGTGGGCT-CTTGCCTCGACCACCATCGACACA
66 TCGAGCACCATCGGCACAAGCTGGGCCC-TGGTACGGG-TGGTTGCCTCGAACACCATCGACACA
* *
14253885 CGTTGAA
129 CGCTGAG
* * * * * * * * * * *
14253892 CCCTGGTGTGGGCGGTTGCCTCGAGCACCATCGGCACACACTAGGCCCTGATGCGGGTGGTTGCC
1 CCCTGGTGTGGGCGGTTACCTCAAACACCATCGACACACGCTGGGCCCTGGTACGAGCGATTGCC
* * * * * * * *
14253957 TTGAACACCATCAGCACACA-CTAGGCCCCGTTACGGGTGGTTACCTCGATCACCATCGACACAC
66 TCGAGCACCATCGGCACA-AGCTGGGCCCTGGTACGGGTGGTTGCCTCGAACACCATCGACACAC
*
14254021 GCTGGG
130 GCTGAG
* ** * * * * *
14254027 CTCTGGTACGGGCGGTTACCTCAAGCACTATCGGCACACGCTGGGCCTTGGTACGAACGATTG-C
1 CCCTGGTGTGGGCGGTTACCTCAAACACCATCGACACACGCTGGGCCCTGGTACGAGCGATTGCC
* * * * * * * *
14254091 TCCGAGCACCATCGGCATAAG-TTGACCCTTGGTGCAGGCT-CTTGCCTCGACCACCATCGACAA
66 T-CGAGCACCATCGGCACAAGCTGGGCCC-TGGTAC-GGGTGGTTGCCTCGAACACCATCGACAC
* *
14254154 AAGATG-G
128 ACGCTGAG
* * *
14254161 TCCCTGGTGTGGGCGGTTACGTCGAACACCATCGACACACGCTGGGCCCTGGTACGAGCGGTTGC
1 -CCCTGGTGTGGGCGGTTACCTCAAACACCATCGACACACGCTGGGCCCTGGTACGAGCGATTGC
* * * * * * *
14254226 CTCGATCACCATTGGCACACGCTGGGCCCTGCTACGGGTGGTTGCCTCGAATACCATCGATACAA
65 CTCGAGCACCATCGGCACAAGCTGGGCCCTGGTACGGGTGGTTGCCTCGAACACCATCGACACAC
*
14254291 GC-CAG
130 GCTGAG
* ** * * * *
14254296 CCCTTGGTGCGGGCTCTTGCCTCAACCACCATCGACACACGTTGGGCCCTGGTACGGGCGATTGC
1 CCC-TGGTGTGGGCGGTTACCTCAAACACCATCGACACACGCTGGGCCCTGGTACGAGCGATTGC
* * * *
14254361 CTCGAGCACTATCGGCACACA-CTGGGCCCTAGTATGGGTGGTTGCCTCGAACACCATCGGCACA
65 CTCGAGCACCATCGGCACA-AGCTGGGCCCTGGTACGGGTGGTTGCCTCGAACACCATCGACACA
14254425 CGCTGAG
129 CGCTGAG
* * * * * * *
14254432 CCCTGTTGGGGGCGGTTGCCTCGATCACCATCGACACACGCTGGGCCCTGGTACAAGCGGTTGCC
1 CCCTGGTGTGGGCGGTTACCTCAAACACCATCGACACACGCTGGGCCCTGGTACGAGCGATTGCC
* * * * * * ** * * * *
14254497 TCGAGCACCATTGGCACACGTTAGGCCTTGGTACGAGCAGTTGCTTCGAGCACCATCGGCACAAG
66 TCGAGCACCATCGGCACAAGCTGGGCCCTGGTACGGGTGGTTGCCTCGAACACCATCGACACACG
14254562 CTGA-
131 CTGAG
14254566 CCCT
1 CCCT
14254570 TAGTGCGGGC
Statistics
Matches: 533, Mismatches: 129, Indels: 33
0.77 0.19 0.05
Matches are distributed among these distances:
134 20 0.04
135 492 0.92
136 21 0.04
ACGTcount: A:0.19, C:0.32, G:0.28, T:0.20
Consensus pattern (135 bp):
CCCTGGTGTGGGCGGTTACCTCAAACACCATCGACACACGCTGGGCCCTGGTACGAGCGATTGCC
TCGAGCACCATCGGCACAAGCTGGGCCCTGGTACGGGTGGTTGCCTCGAACACCATCGACACACG
CTGAG
Found at i:14254498 original size:180 final size:181
Alignment explanation
Indices: 14253777--14254559 Score: 575
Period size: 180 Copynumber: 4.3 Consensus size: 181
14253767 GGCGATTACA
* * * * * *
14253777 TCAAACACCATCGACACAAGCTGGGCCCTGGTGCGGGCGATTACCTTGAACACCATTGGCACA-A
1 TCAACCACCATCGACACACGTTGGGCCCTGGTACGGGCGATTACCTCGAACACCATCGGCACACA
** ** * * * * **
14253841 GCT-GGCCCATGGTGTGGGCTCTTGCCTCGACCACCATCGACACACGTTGAACCCTGGTGTGGGC
66 -CTGGGCCC-TGGTACGGGCGGTTGCCTCGAACACCATCGGCACACGCTGAGCCCTGGTACGGGC
* * * * *
14253905 GGTTGCCTCGAGCACCATCGGCACACA-CTAGGCCC-TGATGCGGGTGGTTGCC
129 GGTTGCCTCGAGCACCATCGACACA-AGCTAGGCCCTTGGTGCAGGCGCTTGCC
* * * * * * * *
14253957 TTGAA-CACCATCAGCACACAC--TAGGCCCCGTTACGGGTGGTTACCTCGATCACCATCGACAC
1 -TCAACCACCATC-G-ACACACGTTGGGCCCTGGTACGGGCGATTACCTCGAACACCATCGGCAC
* * * * * * *
14254019 ACGCTGGGCTCTGGTACGGGCGGTTACCTC-AAGCACTATCGGCACACGCTGGGCCTTGGTACGA
63 ACACTGGGCCCTGGTACGGGCGGTTGCCTCGAA-CACCATCGGCACACGCTGAGCCCTGGTACGG
* * * * * * *
14254083 ACGATTG-CTCCGAGCACCATCGGCATAAG-TTGACCCTTGGTGCAGGCTCTTGCC
127 GCGGTTGCCT-CGAGCACCATCGACACAAGCTAGGCCCTTGGTGCAGGCGCTTGCC
* * * * * ** * * * *
14254137 TCGACCACCATCGACAAAAGATGGTCCCTGGTGTGGGCGGTTACGTCGAACACCATCGACACACG
1 TCAACCACCATCGACACACGTTGGGCCCTGGTACGGGCGATTACCTCGAACACCATCGGCACACA
* * * * * *
14254202 CTGGGCCCTGGTACGAGCGGTTGCCTCGATCACCATTGGCACACGCTGGGCCCTGCTACGGGTGG
66 CTGGGCCCTGGTACGGGCGGTTGCCTCGAACACCATCGGCACACGCTGAGCCCTGGTACGGGCGG
** * * * *
14254267 TTGCCTCGAATACCATCGATACAAGCCA-GCCCTTGGTGCGGGCTCTTGCC
131 TTGCCTCGAGCACCATCGACACAAGCTAGGCCCTTGGTGCAGGCGCTTGCC
* * *
14254317 TCAACCACCATCGACACACGTTGGGCCCTGGTACGGGCGATTGCCTCGAGCACTATCGGCACACA
1 TCAACCACCATCGACACACGTTGGGCCCTGGTACGGGCGATTACCTCGAACACCATCGGCACACA
* * * * **
14254382 CTGGGCCCTAGTATGGGTGGTTGCCTCGAACACCATCGGCACACGCTGAGCCCTGTTGGGGGCGG
66 CTGGGCCCTGGTACGGGCGGTTGCCTCGAACACCATCGGCACACGCTGAGCCCTGGTACGGGCGG
* * * * * *
14254447 TTGCCTCGATCACCATCGACACACGCTGGGCCC-TGGTACAAGCGGTTGCC
131 TTGCCTCGAGCACCATCGACACAAGCTAGGCCCTTGGTGCAGGCGCTTGCC
* * * * * * * * * *
14254497 TCGAGCACCATTGGCACACGTTAGGCCTTGGTACGAGC-AGTTGCTTCGAGCACCATCGGCACA
1 TCAACCACCATCGACACACGTTGGGCCCTGGTACGGGCGA-TTACCTCGAACACCATCGGCACA
14254560 AGCTGACCCT
Statistics
Matches: 468, Mismatches: 118, Indels: 33
0.76 0.19 0.05
Matches are distributed among these distances:
178 4 0.01
179 13 0.03
180 431 0.92
181 15 0.03
182 5 0.01
ACGTcount: A:0.20, C:0.32, G:0.28, T:0.20
Consensus pattern (181 bp):
TCAACCACCATCGACACACGTTGGGCCCTGGTACGGGCGATTACCTCGAACACCATCGGCACACA
CTGGGCCCTGGTACGGGCGGTTGCCTCGAACACCATCGGCACACGCTGAGCCCTGGTACGGGCGG
TTGCCTCGAGCACCATCGACACAAGCTAGGCCCTTGGTGCAGGCGCTTGCC
Found at i:14254782 original size:45 final size:45
Alignment explanation
Indices: 14254690--14254793 Score: 122
Period size: 45 Copynumber: 2.3 Consensus size: 45
14254680 GGTTACCTCG
* * * * *
14254690 ACCACCATCTG-CACATGCTGGCCCTTGGTGCGGGTAGTCGTATCA
1 ACCACCATC-GACACACGCTGGCCCTTGGTGCGGGCAATCGCACCA
*
14254735 ACCACCATCGACACACGCTGGCCCTTGGTGCGGGCACAT-GCCCCA
1 ACCACCATCGACACACGCTGGCCCTTGGTGCGGGCA-ATCGCACCA
14254780 ACCACCATCGACAC
1 ACCACCATCGACAC
14254794 CTACTCACCC
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
44 1 0.02
45 49 0.96
46 1 0.02
ACGTcount: A:0.21, C:0.38, G:0.23, T:0.17
Consensus pattern (45 bp):
ACCACCATCGACACACGCTGGCCCTTGGTGCGGGCAATCGCACCA
Found at i:14264875 original size:345 final size:345
Alignment explanation
Indices: 14264448--14265094 Score: 849
Period size: 345 Copynumber: 1.9 Consensus size: 345
14264438 GGGCCAGAGG
* *
14264448 GGCAGGATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTGTCGATCCGACTGCC
1 GGCAGGATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTACGTGCTGCTGTCGATCCGACTGCC
* ** *
14264513 TGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTTGTTTACCTAA
66 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATACCTAA
* * * *
14264578 GTCAAACCATGAAACAAGCGTGCGGGTGCTCAG-TCGGTCGGAGAGGCATAATGCACAAGCCAGA
131 GTCAAACCATGAAACAAGCATACGGGCGCTCAGCT-GGTCGGAGAGGCATAATACACAAG-CAGA
* * * * *
14264642 -GATCTGTCCGATCCCCCTCTACGTGCT-ACTG-ATCCCGCTGCC-AGTCCAGCTGCCACAACCC
194 GGATCGGTCCGATCCCCCTCTACATGCTGA--GAATCCCGCTACCGA-TCCAGCTACCACAAACC
*
14264703 TCGGTCCGA-CTGGGACTTAGACATGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAATGAT
256 TCGGTCC-ACCTGGGACTTAGACACGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAATGAT
14264767 TGTACGGGTGCTCAGCCGACCGGAGA
320 TGTACGGGTGCTCAGCCGACCGGAGA
* * * * *
14264793 GGCAGGATGCTCAGGCTTGGGATCAGCTCGGTCCCCCTCTACGTGCTGCTGTCGATCCCG-CTGT
1 GGCAGGATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTACGTGCTGCTGTCGAT-CCGACTGC
* * *
14264857 CGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
65 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATACCTA
* * * * * *
14264922 AGTCAACCCATGAAACGAGCATACGGGCGTTGAGCTGGTCGGAGAGGCATAATACGCAAGCTGAG
130 AGTCAAACCATGAAACAAGCATACGGGCGCTCAGCTGGTCGGAGAGGCATAATACACAAGCAGAG
* * * * *
14264987 GATCGGTCCGATCCCCTTCTATATGTTGAGAATCCCGCTACCGATCGAGCTACCACAAACCTTGG
195 GATCGGTCCGATCCCCCTCTACATGCTGAGAATCCCGCTACCGATCCAGCTACCACAAACCTCGG
* *
14265052 TTCACCTGGGGCTTAGACACGGAATGAACTTCGTATGCCTAAG
260 TCCACCTGGGACTTAGACACGGAATGAACTTCGTATGCCTAAG
14265095 TTAACCCACG
Statistics
Matches: 258, Mismatches: 37, Indels: 14
0.83 0.12 0.05
Matches are distributed among these distances:
344 5 0.02
345 247 0.96
346 6 0.02
ACGTcount: A:0.23, C:0.28, G:0.27, T:0.22
Consensus pattern (345 bp):
GGCAGGATGCGCAAGCTGGGGATCAGCCCGGTCCCCCTCTACGTGCTGCTGTCGATCCGACTGCC
GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATACCTAA
GTCAAACCATGAAACAAGCATACGGGCGCTCAGCTGGTCGGAGAGGCATAATACACAAGCAGAGG
ATCGGTCCGATCCCCCTCTACATGCTGAGAATCCCGCTACCGATCCAGCTACCACAAACCTCGGT
CCACCTGGGACTTAGACACGGAATGAACTTCGTATGCCTAAGCCAACCCATAAAATGATTGTACG
GGTGCTCAGCCGACCGGAGA
Found at i:14264902 original size:26 final size:26
Alignment explanation
Indices: 14264866--14264918 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14264856 TCGGTTCGAT
14264866 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14264892 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14264918 C
1 C
14264919 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14264967 original size:174 final size:173
Alignment explanation
Indices: 14264382--14264970 Score: 453
Period size: 174 Copynumber: 3.4 Consensus size: 173
14264372 GCTTAAATCA
* * * * * * * * *
14264382 GGAATAAACCTCGAATGCCTAAGTCAACCCCTGAAATGAGCATGCGGGCGCTGAGCGGGCCAGAG
1 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGCTGGCCGGAG
* * * * * *
14264447 GGGCAGGATGCGCAAGCTGGGGATCGGCCCGGTCCCCCTCTGCGTGCTGCTGTCGAT-CCGACTG
66 AGGCAGGATGCACAAGCTAGGGATCAGCTCGGTCCCCCTCTACGTGCTGCTGTCGATCCCG-CTG
* *
14264511 CCTGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
130 CCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * * * * *
14264555 AGGAATGAACTTTGTTTACCTAAGTCAAACCATGAAACAAGCGTGCGGGTGCTCAG-TCGGTCGG
1 -GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGCT-GGCCGG
** * * * * *
14264619 AGAGGCATAATGCACAAGCCAGAGATCTG-TCCGATCCCCCTCTACGTGCTAC--T-GATCCCGC
64 AGAGGCAGGATGCACAAGCTAGGGATCAGCT-CGGTCCCCCTCTACGTGCTGCTGTCGATCCCGC
* * * * * *** * *
14264680 TGCCAG-TCCAGCTGCCACAACCCTCGGTCCG-ACT-GGGA--CTTAGACAT
128 TGCCAGTTCGATCT--TA-GA--CTGGGAATGAACTCCGTATGCTTAGAC-T
* * * *** * * *
14264727 GGAATGAACTTCGTATGCCTAAGCCAACCCATAAAATGATTGTACGGGTGCTCAGCCGACCGGAG
1 GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGCTGGCCGGAG
* * * *
14264792 AGGCAGGATGCTCAGGCTTGGGATCAGCTCGGTCCCCCTCTACGTGCTGCTGTCGATCCCGCTGT
66 AGGCAGGATGCACAAGCTAGGGATCAGCTCGGTCCCCCTCTACGTGCTGCTGTCGATCCCGCTGC
*
14264857 CGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
131 CAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
14264900 GGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGTTGAGCTGGTCGGA
1 -GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGCTGGCCGGA
14264965 GAGGCA
65 GAGGCA
14264971 TAATACGCAA
Statistics
Matches: 306, Mismatches: 89, Indels: 40
0.70 0.20 0.09
Matches are distributed among these distances:
170 9 0.03
171 107 0.35
172 10 0.03
173 6 0.02
174 164 0.54
175 10 0.03
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.21
Consensus pattern (173 bp):
GGAATGAACTTCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGCTGGCCGGAG
AGGCAGGATGCACAAGCTAGGGATCAGCTCGGTCCCCCTCTACGTGCTGCTGTCGATCCCGCTGC
CAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
Found at i:14265936 original size:45 final size:45
Alignment explanation
Indices: 14265868--14266266 Score: 422
Period size: 45 Copynumber: 8.9 Consensus size: 45
14265858 CAGCATAAGA
* ** * * * * *
14265868 TAGGCCTTGGTGTAGGCGGTTACCTTGATCACCATTGGCACGTGC
1 TAGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGC
* * * * * *
14265913 T-GGCCCTTGGTGCGGGTGGTTACCTCGACCACCATCGGCAGAAGA
1 TAGGCCC-TGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGC
* *
14265958 TAGGCCCTGGTGTGGGCGGTTGCCTCGAGCACCATTGGCACATGC
1 TAGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGC
* * * * *
14266003 TGGGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGC
1 TAGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGC
** * *
14266048 TAGGCCCTGGTGCGGGTAGTTGCCTCGAACACCATAGGCACATGC
1 TAGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGC
* * *
14266093 TGGGCCCTGGTACGGGCGGTTGCCTCGAGCACCATCGACACATGC
1 TAGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGC
* * *
14266138 TGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCAAACGC
1 TAGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGC
* * * * *
14266183 TGGGCCTTGGTGCGGGCGGTTGCCTCCAGCACCATCGGCACACGT
1 TAGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGC
* * * *
14266228 TGGGCCCTGGTACGGGCGGTTGCCTCAAGTACCATCGGC
1 TAGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGC
14266267 GGTTGCCTCA
Statistics
Matches: 299, Mismatches: 53, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
44 4 0.01
45 290 0.97
46 5 0.02
ACGTcount: A:0.15, C:0.30, G:0.34, T:0.21
Consensus pattern (45 bp):
TAGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGC
Found at i:14266020 original size:135 final size:135
Alignment explanation
Indices: 14265870--14266264 Score: 504
Period size: 135 Copynumber: 2.9 Consensus size: 135
14265860 GCATAAGATA
* * * * *
14265870 GGCCTTGGTGTAGGCGGTTACCTTGATCACCATTGGCACGTGCTGGCCCTTGGTGCGGGTGGTTA
1 GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCTGGCCCTTGGTGCGGGTGGTTG
* * * ** * *
14265935 CCTCGACCACCATCGGCAGAAGATAGGCCCTGGTGTGGGCGGTTGCCTCGAGCACCATTGGCACA
66 CCTCGAACACCATCGGCACAAGATGGGCCCTGGTACGGGCGGTTGCCTCGAGCACCATCGACACA
14266000 TGCTG
131 TGCTG
*
14266005 GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCTAGGCCC-TGGTGCGGGTAGTT
1 GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCT-GGCCCTTGGTGCGGGTGGTT
* * *
14266069 GCCTCGAACACCATAGGCACATGCTGGGCCCTGGTACGGGCGGTTGCCTCGAGCACCATCGACAC
65 GCCTCGAACACCATCGGCACAAGATGGGCCCTGGTACGGGCGGTTGCCTCGAGCACCATCGACAC
14266134 ATGCTG
130 ATGCTG
* * * * * * * *
14266140 GGCCCTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCAAACGCTGGGCCTTGGTGCGGGCGGTTG
1 GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCTGGCCCTTGGTGCGGGTGGTTG
* * * * * *
14266205 CCTCCAGCACCATCGGCACACGTTGGGCCCTGGTACGGGCGGTTGCCTCAAGTACCATCG
66 CCTCGAACACCATCGGCACAAGATGGGCCCTGGTACGGGCGGTTGCCTCGAGCACCATCG
14266265 GCGGTTGCCT
Statistics
Matches: 226, Mismatches: 32, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
134 4 0.02
135 217 0.96
136 5 0.02
ACGTcount: A:0.15, C:0.30, G:0.34, T:0.21
Consensus pattern (135 bp):
GGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCTGGCCCTTGGTGCGGGTGGTTG
CCTCGAACACCATCGGCACAAGATGGGCCCTGGTACGGGCGGTTGCCTCGAGCACCATCGACACA
TGCTG
Found at i:14266200 original size:90 final size:90
Alignment explanation
Indices: 14265810--14266266 Score: 466
Period size: 90 Copynumber: 5.1 Consensus size: 90
14265800 AATCGACCAT
* * * ** * * * * * *
14265810 CATCGGCACAGGCT-GCCCTTTGGTACGGGCACTTGCCTCGACCGCCATCAGCATAAGATAGGCC
1 CATCGGCACATGCTGGGCC-TTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGCTAGGCC
* ** * * *
14265874 TTGGTGTAGGCGGTTACCTTGATCAC
65 CTGGTGCGGGCGGTTGCCTCGAGCAC
* * * * * * * * *
14265900 CATTGGCACGTGCTGGCCCTTGGTGCGGGTGGTTACCTCGACCACCATCGGCAGAAGATAGGCCC
1 CATCGGCACATGCTGGGCCTTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGCTAGGCCC
*
14265965 TGGTGTGGGCGGTTGCCTCGAGCAC
66 TGGTGCGGGCGGTTGCCTCGAGCAC
* * * *
14265990 CATTGGCACATGCTGGGCCTTGGTGCAGGCGGTTGCCTTGATCACCATCGGCACATGCTAGGCCC
1 CATCGGCACATGCTGGGCCTTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGCTAGGCCC
** *
14266055 TGGTGCGGGTAGTTGCCTCGAACAC
66 TGGTGCGGGCGGTTGCCTCGAGCAC
* * * * *
14266080 CATAGGCACATGCTGGGCCCTGGTACGGGCGGTTGCCTCGAGCACCATCGACACATGCTGGGCCC
1 CATCGGCACATGCTGGGCCTTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGCTAGGCCC
14266145 TGGTGCGGGCGGTTGCCTCGAGCAC
66 TGGTGCGGGCGGTTGCCTCGAGCAC
* * * * * *
14266170 CATCGGCAAACGCTGGGCCTTGGTGCGGGCGGTTGCCTCCAGCACCATCGGCACACGTTGGGCCC
1 CATCGGCACATGCTGGGCCTTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGCTAGGCCC
* * *
14266235 TGGTACGGGCGGTTGCCTCAAGTAC
66 TGGTGCGGGCGGTTGCCTCGAGCAC
14266260 CATCGGC
1 CATCGGC
14266267 GGTTGCCTCA
Statistics
Matches: 313, Mismatches: 53, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
90 309 0.99
91 4 0.01
ACGTcount: A:0.16, C:0.31, G:0.33, T:0.21
Consensus pattern (90 bp):
CATCGGCACATGCTGGGCCTTGGTGCGGGCGGTTGCCTCGAGCACCATCGGCACATGCTAGGCCC
TGGTGCGGGCGGTTGCCTCGAGCAC
Found at i:14266267 original size:22 final size:22
Alignment explanation
Indices: 14266242--14266288 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
14266232 CCCTGGTACG
*
14266242 GGCGGTTGCCTCAAGTACCATC
1 GGCGGTTGCCTCAAGCACCATC
14266264 GGCGGTTGCCTCAAGCACCATC
1 GGCGGTTGCCTCAAGCACCATC
14266286 GGC
1 GGC
14266289 ACACGCTGGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.17, C:0.34, G:0.30, T:0.19
Consensus pattern (22 bp):
GGCGGTTGCCTCAAGCACCATC
Found at i:14266333 original size:45 final size:44
Alignment explanation
Indices: 14266268--14266409 Score: 140
Period size: 45 Copynumber: 3.2 Consensus size: 44
14266258 ACCATCGGCG
* *
14266268 GTTGCCTCAAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGC
1 GTTGCCTTAAACACCATCGGCACACGCTGGGCCCTGGTGCAGGC
* * * * * * *
14266312 GTTTGCCTTGATCACCATCGGCACATGCTGGGCCCCGATACGGGC
1 G-TTGCCTTAAACACCATCGGCACACGCTGGGCCCTGGTGCAGGC
* * * *
14266357 AGTTACCTTAAACACCATTGGCACACGTTGGGCCCTGGTGCTGGC
1 -GTTGCCTTAAACACCATCGGCACACGCTGGGCCCTGGTGCAGGC
14266402 GATTGCCT
1 G-TTGCCT
14266410 CGGTCGGACC
Statistics
Matches: 76, Mismatches: 19, Indels: 5
0.76 0.19 0.05
Matches are distributed among these distances:
44 2 0.03
45 73 0.96
46 1 0.01
ACGTcount: A:0.17, C:0.32, G:0.29, T:0.22
Consensus pattern (44 bp):
GTTGCCTTAAACACCATCGGCACACGCTGGGCCCTGGTGCAGGC
Found at i:14266354 original size:112 final size:112
Alignment explanation
Indices: 14266152--14266356 Score: 302
Period size: 112 Copynumber: 1.8 Consensus size: 112
14266142 CCCTGGTGCG
* * *
14266152 GGCGGTTGCCTCGAGCACCATCGGCAAACGCTGGGCCTTGGTGCGGGCGGTTGCCTCCAGCACCA
1 GGCGGTTGCCTCAAGCACCATCGGCAAACGCTGGGCCCTGGTGCAGGCGGTTGCCTCCAGCACCA
* * *
14266217 TCGGCACACGTTGGGCCCTGGTACGGGCGGTTGCCTCAAGTACCATC
66 TCGGCACACGCTGGGCCCCGATACGGGCGGTTGCCTCAAGTACCATC
* * ** *
14266264 GGCGGTTGCCTCAAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGTTTGCCTTGATCACCA
1 GGCGGTTGCCTCAAGCACCATCGGCAAACGCTGGGCCCTGGTGCAGGCGGTTGCCTCCAGCACCA
*
14266329 TCGGCACATGCTGGGCCCCGATACGGGC
66 TCGGCACACGCTGGGCCCCGATACGGGC
14266357 AGTTACCTTA
Statistics
Matches: 81, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
112 81 1.00
ACGTcount: A:0.15, C:0.34, G:0.33, T:0.19
Consensus pattern (112 bp):
GGCGGTTGCCTCAAGCACCATCGGCAAACGCTGGGCCCTGGTGCAGGCGGTTGCCTCCAGCACCA
TCGGCACACGCTGGGCCCCGATACGGGCGGTTGCCTCAAGTACCATC
Found at i:14266393 original size:157 final size:157
Alignment explanation
Indices: 14266107--14266410 Score: 410
Period size: 157 Copynumber: 1.9 Consensus size: 157
14266097 CCCTGGTACG
* * *
14266107 GGCGGTTGCCTCGAGCACCATCGACACATGCTGGGCCCTGGTGCGGGCGGTTGCCTCGAGCACCA
1 GGCGGTTGCCTCAAGCACCATCGACACACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAGCACCA
** * * * * * *
14266172 TCGGCAAACGCTGGGCCTTGGTGCGGGCGGTTGCCTCCAGCACCATCGGCACACGTTGGGCCCTG
66 TCGGCAAACGCTGGGCCCCGATACGGGCAGTTACCTCAAACACCATCGGCACACGTTGGGCCCTG
*
14266237 GTACGGGCGGTTGCCTCAAGTACCATC
131 GTACGGGCGATTGCCTCAAGTACCATC
* * * *
14266264 GGCGGTTGCCTCAAGCACCATCGGCACACGCTGGGCCCTGGTGCAGGCGTTTGCCTTGATCACCA
1 GGCGGTTGCCTCAAGCACCATCGACACACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAGCACCA
* * * *
14266329 TCGGCACATGCTGGGCCCCGATACGGGCAGTTACCTTAAACACCATTGGCACACGTTGGGCCCTG
66 TCGGCAAACGCTGGGCCCCGATACGGGCAGTTACCTCAAACACCATCGGCACACGTTGGGCCCTG
* *
14266394 GTGCTGGCGATTGCCTC
131 GTACGGGCGATTGCCTC
14266411 GGTCGGACCC
Statistics
Matches: 125, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
157 125 1.00
ACGTcount: A:0.15, C:0.33, G:0.32, T:0.20
Consensus pattern (157 bp):
GGCGGTTGCCTCAAGCACCATCGACACACGCTGGGCCCTGGTGCAGGCGGTTGCCTCGAGCACCA
TCGGCAAACGCTGGGCCCCGATACGGGCAGTTACCTCAAACACCATCGGCACACGTTGGGCCCTG
GTACGGGCGATTGCCTCAAGTACCATC
Found at i:14271271 original size:6 final size:6
Alignment explanation
Indices: 14271251--14271322 Score: 53
Period size: 6 Copynumber: 12.3 Consensus size: 6
14271241 TAAGTATATG
* * * *
14271251 TTTA-T TTTA-T TTTATT TTTATT TTTATT ATTATT ATTT-TA TATATG
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT -TTTATT TTTATT
*
14271297 TATATT TTT-TCT TTTATT TTTATT TT
1 TTTATT TTTAT-T TTTATT TTTATT TT
14271323 AGCTATTTAC
Statistics
Matches: 55, Mismatches: 7, Indels: 9
0.77 0.10 0.13
Matches are distributed among these distances:
5 12 0.22
6 40 0.73
7 3 0.05
ACGTcount: A:0.21, C:0.01, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:14271286 original size:15 final size:16
Alignment explanation
Indices: 14271252--14271293 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
14271242 AAGTATATGT
* *
14271252 TTATTTTATTTTATTT
1 TTATTTTATATTATTA
14271268 TTATTTT-TATTATTA
1 TTATTTTATATTATTA
14271283 TTATTTTATAT
1 TTATTTTATAT
14271294 ATGTATATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
15 13 0.57
16 10 0.43
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (16 bp):
TTATTTTATATTATTA
Found at i:14271337 original size:53 final size:46
Alignment explanation
Indices: 14271255--14271372 Score: 116
Period size: 48 Copynumber: 2.5 Consensus size: 46
14271245 TATATGTTTA
*
14271255 TTTTATTTTATTTTTATTTTTATTATTATTATTTTATATATGTATATT
1 TTTTATTTTATTTTTATTTTTATTATTATT-TATTA-ATATGTATATT
*
14271303 TTTTCTTTTATTTTTATTTTAGCTATTTACTTATTTATTAATATGTATATAT
1 TTTTATTTTATTTTTATTTT---TA-TTA-TTATTTATTAATATGTATAT-T
*
14271355 CTTTA--TTATTTTT-TTTTT
1 TTTTATTTTATTTTTATTTTT
14271373 GTAATATATT
Statistics
Matches: 60, Mismatches: 4, Indels: 14
0.77 0.05 0.18
Matches are distributed among these distances:
46 1 0.02
48 19 0.32
49 4 0.07
50 8 0.13
51 12 0.20
52 11 0.18
53 5 0.08
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (46 bp):
TTTTATTTTATTTTTATTTTTATTATTATTTATTAATATGTATATT
Found at i:14272345 original size:26 final size:26
Alignment explanation
Indices: 14272307--14272357 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
14272297 GCCGCTCCCC
* *
14272307 GTTT-TTTTTTTTTTTTTCTTTTATTT
1 GTTTATTTGTTTTTTTTT-ATTTATTT
14272333 GTTTATTTGTTTTTTTTTATTTATT
1 GTTTATTTGTTTTTTTTTATTTATT
14272358 AGATTAGGTT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.08, C:0.02, G:0.06, T:0.84
Consensus pattern (26 bp):
GTTTATTTGTTTTTTTTTATTTATTT
Found at i:14272403 original size:6 final size:6
Alignment explanation
Indices: 14272392--14272448 Score: 50
Period size: 6 Copynumber: 9.7 Consensus size: 6
14272382 TTTATCTTAA
*
14272392 TTTTAT TTTTAT TTTT-G TTTTACT TTTT-T TAATTT-T TTTTA- TTTTAT
1 TTTTAT TTTTAT TTTTAT TTTTA-T TTTTAT T--TTTAT TTTTAT TTTTAT
14272439 TTTTAT TTTT
1 TTTTAT TTTT
14272449 TTATTCTATT
Statistics
Matches: 43, Mismatches: 2, Indels: 12
0.75 0.04 0.21
Matches are distributed among these distances:
5 14 0.33
6 20 0.47
7 9 0.21
ACGTcount: A:0.14, C:0.02, G:0.02, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:14272405 original size:11 final size:10
Alignment explanation
Indices: 14272391--14272450 Score: 68
Period size: 11 Copynumber: 5.8 Consensus size: 10
14272381 TTTTATCTTA
14272391 ATTTTATTTTT
1 ATTTT-TTTTT
14272402 ATTTTTGTTTT
1 ATTTTT-TTTT
*
14272413 A-CTTTTTTT
1 ATTTTTTTTT
*
14272422 AATTTTTTTT
1 ATTTTTTTTT
14272432 ATTTTATTTTT
1 ATTTT-TTTTT
14272443 ATTTTTTT
1 ATTTTTTT
14272451 ATTCTATTTT
Statistics
Matches: 43, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
9 5 0.12
10 18 0.42
11 20 0.47
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.82
Consensus pattern (10 bp):
ATTTTTTTTT
Found at i:14272440 original size:14 final size:13
Alignment explanation
Indices: 14272392--14272453 Score: 54
Period size: 14 Copynumber: 4.5 Consensus size: 13
14272382 TTTATCTTAA
14272392 TTTTATTTTTATTT
1 TTTTATTTTT-TTT
**
14272406 TTGTT-TTACTTTT
1 TT-TTATTTTTTTT
*
14272419 TTTAATTTTTTTT
1 TTTTATTTTTTTT
14272432 ATTTTATTTTTATTT
1 -TTTTATTTTT-TTT
14272447 TTTTATT
1 TTTTATT
14272454 CTATTTTCTT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
12 1 0.03
13 11 0.29
14 21 0.55
15 5 0.13
ACGTcount: A:0.15, C:0.02, G:0.02, T:0.82
Consensus pattern (13 bp):
TTTTATTTTTTTT
Found at i:14272451 original size:19 final size:19
Alignment explanation
Indices: 14272391--14272460 Score: 72
Period size: 19 Copynumber: 3.5 Consensus size: 19
14272381 TTTTATCTTA
14272391 ATTTTATTTTTATTTTTGTT
1 ATTTTATTTTTATTTTT-TT
14272411 -TTACTT-TTTTTAATTTTTTTT
1 ATT--TTATTTTT-A-TTTTTTT
14272432 ATTTTATTTTTATTTTTTT
1 ATTTTATTTTTATTTTTTT
*
14272451 ATTCTATTTT
1 ATTTTATTTT
14272461 CTTTAAATAA
Statistics
Matches: 43, Mismatches: 1, Indels: 13
0.75 0.02 0.23
Matches are distributed among these distances:
19 18 0.42
20 8 0.19
21 10 0.23
22 7 0.16
ACGTcount: A:0.16, C:0.03, G:0.01, T:0.80
Consensus pattern (19 bp):
ATTTTATTTTTATTTTTTT
Found at i:14272460 original size:11 final size:10
Alignment explanation
Indices: 14272393--14272460 Score: 54
Period size: 11 Copynumber: 6.8 Consensus size: 10
14272383 TTATCTTAAT
14272393 TTTATTTTTA
1 TTTATTTTTA
*
14272403 TTTTTGTTTTA
1 TTTAT-TTTTA
*
14272414 CTTT-TTTTAA
1 -TTTATTTTTA
14272424 TTT-TTTTTA
1 TTTATTTTTA
14272433 TTTTATTTTTA
1 -TTTATTTTTA
14272444 -TT-TTTTTA
1 TTTATTTTTA
14272452 TTCTATTTT
1 TT-TATTTT
14272461 CTTTAAATAA
Statistics
Matches: 48, Mismatches: 3, Indels: 13
0.75 0.05 0.20
Matches are distributed among these distances:
8 6 0.12
9 11 0.23
10 12 0.25
11 16 0.33
12 3 0.06
ACGTcount: A:0.15, C:0.03, G:0.01, T:0.81
Consensus pattern (10 bp):
TTTATTTTTA
Found at i:14272548 original size:57 final size:57
Alignment explanation
Indices: 14272487--14272873 Score: 525
Period size: 57 Copynumber: 6.7 Consensus size: 57
14272477 AAATTTCCAA
14272487 AAAAAATATTTTGGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCT
1 AAAAAATATTTTGGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCT
* * *
14272544 AAAAAATATTTTTGGA-GAAAAGTTGAAACTATCAATTTTCCTTAAAAATAAGTTTCA
1 AAAAAATA-TTTTGGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCT
* ** **
14272601 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTGA
1 AAAAAATATTTTGGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT-AAA-TTTCT
*
14272660 AAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATCAAAATTT-T
1 AAAAAATATTTTGGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT--AAATTTCT
* *
14272718 CAAAAAATAATTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCC
1 -AAAAAAT-ATTTTGGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCT
14272776 AAAAAATATTTGTGG-GGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTT-T
1 AAAAAATATTT-TGGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCT
* *
14272832 CAAAAAATATTTTTGG-GAAAAAGTTGAAAGTACCAATTTTCC
1 -AAAAAATA-TTTTGGAGGAAAAGTTGAAAGTATCAATTTTCC
14272874 CCACACAAGA
Statistics
Matches: 300, Mismatches: 19, Indels: 22
0.88 0.06 0.06
Matches are distributed among these distances:
56 10 0.03
57 174 0.58
58 12 0.04
59 95 0.32
60 9 0.03
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (57 bp):
AAAAAATATTTTGGAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAATAAATTTCT
Found at i:14277827 original size:26 final size:26
Alignment explanation
Indices: 14277789--14277841 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14277779 CCAGTGCGAT
*
14277789 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14277815 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14277841 C
1 C
14277842 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14278717 original size:26 final size:26
Alignment explanation
Indices: 14278688--14278740 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14278678 CCGGTCTGAT
* *
14278688 CTTAGATTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
*
14278714 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
14278740 C
1 C
14278741 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:14279168 original size:903 final size:897
Alignment explanation
Indices: 14276917--14279558 Score: 3591
Period size: 902 Copynumber: 2.9 Consensus size: 897
14276907 CTGATCCAAT
*
14276917 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * ** *
14276982 CGGCCAGAGGGGCGGGACGCGCAAGCCGGGGATCAATCGGGT-CCCCTTCTGCAT-TCTGTCGAT
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTT-TGCATGT-TGCCGAT
* * *
14277045 CCTACTGCCACAACCCTCAGTCC-GATCCAATCTTAGA-TAGGGAATTAACTCCGTATGCCTAAG
129 CCTACTGCCACAACCCTCAGACCTG-TCTAATCTTAGACT-GGGAATGAACTCCGTATGCCTAAG
* * * ** * *
14277108 CCAACTGATGAAACGAAC--A-GGCGGGCGGGCACTACCCCGTCCAGAGAGACGGGATGCACAAG
192 CCAACCGACGAAACGAGCGGAGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
*
14277170 CCGTGGATCGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGG-TGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
14277235 TTTTATGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
321 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *** *
14277300 ACTTGTTTTTTTTTTTTCACAATTTTTGTAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
386 ACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCCGGATTTTTTAAAATTTTTTC
* * * * *
14277365 GGAAGGAGTTTTTAACCCAAACTTAGTAGACACGATCGTTGTA-TTTTTCTTGGCTTGCACAAAA
451 GAAAGGAGTTTTGAACCCAAACTT-GTAGACATGATCCTTGTATTTTTTC-TGGCATGCACAAAA
* *
14277429 AAATTTAGCAAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGACCCCATTTC
514 AAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
14277494 AGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGCTGTGAG
579 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
14277559 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
644 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* * * *
14277624 CATGTGCGCACACCCCCCCCCGAACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
709 CATGTGCGCACA-CCACCCCCGGACCCCCCGATCGTCAGAACCCCAATGTCGTCGGTCAGGTTCT
* * ** * **
14277689 CCAGCGATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGTCACCAGCACATGCCCAAGCCC
773 CCAGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGAG-CACCAGCACATGCCTGAGCCC
* *** * *
14277754 AACATGTGCTGTTGTAAGCCTTGATCCAGTGCGATCTTAGACTAGGAATGAACTCCGTATG
837 AGCATGTGCTGTCACAACCCTCGATCCAGTGCGATCTTAGACTAGGAATGAACTCCGTATG
* *
14277815 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTACAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14277880 CGGCCAGAGGGGCAGGATGAGCAAGCCGGGGATC-GACCGGGTCCCCCTCTGCATGCTACCGATC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAG-CCGGGTCCCCCTTTGCATGTTGCCGATC
**
14277944 CTACTGCCACAACCCTC-GGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
130 CTACTGCCACAACCCTCAGACCT-GTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
14278008 AACCGACGAATCGAGCGTGCGGGCGGGCGGGCACTACGTCGGCTAGAGAGACAGGATGCGCAAGC
194 AACCGACGAAACGAGCG-GAGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
14278073 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
* *
14278138 TTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGA
322 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * *
14278203 CTCGTTTTCTATTTTTCACGATTTCCCAAACTTTTTACGGTT-CGAGATTTTTTAAAATTTTTTC
387 CTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCCG-GATTTTTTAAAATTTTTTC
* **
14278267 GAAAGGAGTTTTGAACCCAAACTTGTTAGACGTGATCCTTGTACTTTTTTCTACCATGCACAAAA
451 GAAAGGAGTTTTGAACCCAAACTTG-TAGACATGATCCTTGTA-TTTTTTCTGGCATGCACAAAA
* *
14278332 AAATTTAGCTAAAAACTCGAAGTGTACAAGAATTTT-TGATCATTTTG-AAAAAGTGTCCCCA-T
514 AAATTTAGCTAAAAACTCAAAGTGTACAAG-ATTTTGTGACCA-TTTGAAAAAAGTGTCCCCATT
* * *
14278394 TCAGACACTTTAATGGGTACTGGCAGCAAGCCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTG
577 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * * *
14278459 AGTTCTCGAGGTTTGATTAGGGATA-GGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
642 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * * *
14278523 ATCATGTGCGCACA-CACCCCCGGGCACCCCGATCGTCAGAACCCCAATGTCATCGATCAGGTTC
707 ATCATGTGCGCACACCACCCCCGGACCCCCCGATCGTCAGAACCCCAATGTCGTCGGTCAGGTTC
* * *
14278587 TCCGGTAATGCTCCGGTGATGGTGCCCCGGTGAAGAAAAATGTAGCACCAGCACATGCCTGAGCC
772 TCCAGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATG-AGCACCAGCACATGCCTGAGCC
* *
14278652 CAGCATGTGCTGTCACAACCCTCGATCCGGT-CTGATCTTAGA-TTGAGAATGAACTCCGTATG
836 CAGCATGTGCTGTCACAACCCTCGATCCAGTGC-GATCTTAGACTAG-GAATGAACTCCGTATG
* * *
14278714 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGT
1 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *** *
14278779 CGGCCAGAGGTGTAGGATGCGCAATTTGGGGATCAGCCAGGTCCCCCTTTGCATGTTGCCGATCC
66 CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTTTGCATGTTGCCGATCC
* ** * *
14278844 TACTACCGTAACCCTCAGACCTGTGTGATCTTAGACTGGGAATGAAC-CCTGTATGCCTAAGCCA
131 TACTGCCACAACCCTCAGACCTGTCTAATCTTAGACTGGGAATGAACTCC-GTATGCCTAAGCCA
* * *
14278908 ACCGACGAAACGAGTGGGCGGGAGGGTGGGCGGGCACTACGTCGGCCAGAAAGACGGGATGCGTA
195 ACCGACGAAACGA----GC-GGAGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
** * * *
14278973 AGCCGCAGATCGATAGGGTGGTAGGTGCGTTTAGGTACATCTTCATATTTCTACGTGCTAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTG-GTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* *
14279038 ATTTTTATGGTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
319 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
14279103 CGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCAGTTCCGGATTTTTTAAAATTTTT
384 CGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCCGGATTTTTTAAAATTTTT
** ** * * *
14279168 TCGAAAGGTTTTTTGGCCCCATACTTGGTAGACATGATCCTTTTATTTTTGT-TGGCATGCATAA
449 TCGAAAGGAGTTTTGAACCCAAACTT-GTAGACATGATCCTTGTATTTTT-TCTGGCATGCACAA
* * *
14279232 AAAAATTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATT
512 AAAAATTTAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
14279297 TCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTG
577 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
14279362 AGTTCTCAAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACGAGCACCCATCACAC
642 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACAC
* * * ** * * * *
14279427 ATCAAGTTCGCACATCGGCCTC-GACCCCCCAATCGCCAGAACCCCAATGTCGCCGGTCAGGTTC
707 ATCATGTGCGCACACCACCCCCGGACCCCCCGATCGTCAGAACCCCAATGTCGTCGGTCAGGTTC
* *
14279491 TCCAGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATG-CTCGAGC
772 TCCAGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATG-AGCACCAGCACATGCCT-GAGC
14279555 CCAG
835 CCAG
14279559 TATTTGCTAC
Statistics
Matches: 1533, Mismatches: 173, Indels: 70
0.86 0.10 0.04
Matches are distributed among these distances:
897 2 0.00
898 179 0.12
899 326 0.21
900 5 0.00
901 63 0.04
902 397 0.26
903 396 0.26
904 161 0.11
905 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCCTTTGCATGTTGCCGATCC
TACTGCCACAACCCTCAGACCTGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGAGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACAATTTTCAAAACTTTTTACGGTTCCGGATTTTTTAAAATTTTTTCGAAAG
GAGTTTTGAACCCAAACTTGTAGACATGATCCTTGTATTTTTTCTGGCATGCACAAAAAAATTTA
GCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
GCACACCACCCCCGGACCCCCCGATCGTCAGAACCCCAATGTCGTCGGTCAGGTTCTCCAGTGAT
GCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGAGCACCAGCACATGCCTGAGCCCAGCATGTGC
TGTCACAACCCTCGATCCAGTGCGATCTTAGACTAGGAATGAACTCCGTATG
Found at i:14279900 original size:26 final size:26
Alignment explanation
Indices: 14279871--14279923 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14279861 CCGGTCCGAT
14279871 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
* *
14279897 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
14279923 C
1 C
14279924 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:14281619 original size:26 final size:27
Alignment explanation
Indices: 14281590--14281640 Score: 86
Period size: 26 Copynumber: 1.9 Consensus size: 27
14281580 GATCTTTGAT
*
14281590 TGGGAATGAACTCCGTATG-CTAAGAC
1 TGGGAATGAACTCCATATGCCTAAGAC
14281616 TGGGAATGAACTCCATATGCCTAAG
1 TGGGAATGAACTCCATATGCCTAAG
14281641 TCAACCCACA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
26 18 0.78
27 5 0.22
ACGTcount: A:0.31, C:0.20, G:0.25, T:0.24
Consensus pattern (27 bp):
TGGGAATGAACTCCATATGCCTAAGAC
Found at i:14282514 original size:26 final size:26
Alignment explanation
Indices: 14282485--14282537 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14282475 CCGGTCTGAT
14282485 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14282511 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14282537 C
1 C
14282538 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14283023 original size:896 final size:895
Alignment explanation
Indices: 14280729--14285300 Score: 6118
Period size: 889 Copynumber: 5.2 Consensus size: 895
14280719 CCGATCCAAT
* * *
14280729 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCCCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
*
14280794 CGACCAGAGGGGCGGGA----C--G-C-GGGATCGACCGGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGCCGATCC
*
14280851 TGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14280916 CCAATGAAACGAGCGGGCGGGCGAGTGGGCACGACGCCAGCCAGAGAAACGGGATGCGAAAGTCG
196 CCGATGAAACGAGCGGGC-GG-GA--GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* **
14280981 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
257 TGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTT
* * *
14281046 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATAGTAAGACGACT
322 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * ** * *
14281111 CGTTTTCTATTTTTCACAATTTTTAAAACTTTTTGCGGTTCAGGATTTTTAAAAATTTTTTTGGA
387 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTAGGA
* * * * * *
14281176 ATGATTTTTTGCCCCAAGCTTGGTAGACGTTATCCTTGTATTTTTTTTGGCATGTACAAAAAAAT
452 AGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAT
*
14281241 TCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
517 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
14281306 ACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTGAGAGGGTGTGAGTTCT
582 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
14281371 CGAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCAAG
647 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * *
14281435 TGCGCACACCCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGTCGCC--T--G---T-C--AGG
712 TGCGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGTTCTCCGGAGA
* * * *
14281490 TTCTCCGGCGATGGTGCCCC-AGCGAAGAAAAATACGGCACCAGCACATACCCGAGCCCAACATG
777 TGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * *
14281554 TGCTGCC-ACAACCCTTGGTCCGATCGGATCTTTGATTGGGAATGAACTCCGTATG
841 TGCTGCCGA-AACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14281609 CTAAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACAAAATGAGCGTTGCGGGCGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-TGCGGGCGCTCAG
* * * ** ** * *
14281674 CCGGCCAGAGGGGCGGGATGAGCAAGCAGGAGATCGGTCGGGTCTACCTCTGCTTGCTGTCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGCCGATC
* * ** * * * * * * *
14281739 CTGCTGTCGCAACCCTCATTCCGATCGGATCTTAGATTGGAAATGAACTCCGTAAGCCTAAGCCC
130 CTGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14281804 ACCGATGAAACGAACGGGCGGGCGGACGGGCACTACGTCAGCCAGAAAGACGGGATGCGCAAGCC
195 ACCGATGAAACGAGCGGGC--G-GGA-GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
14281869 GTGGATCGATAGGTTGGTAGGAGGGTTTGGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
256 GTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTT
* *
14281934 TTATAGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAC
321 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
14281999 TCGTTTTCTATTTTCCACGATTTTTAAAACGTTTTACGGTTTGGGATTTTTTAAAATTTTTTCAG
386 TCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTT-AG
* * * * *
14282064 AAAGG-TTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
450 GAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA
* *
14282128 ATTCAGCTAAAAACTCAAAGTGTAGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
515 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
14282193 ACACTTTAATGGCTACTGGCAGCAAACCTTTAAAATCTCAAATGCTCTTT-ATGGGGTATGAGTT
580 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
14282257 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
645 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
** * * * *
14282322 TGTGCGCACATCCCCCTTTGGCCCCCCCGATCGCCGAAACCCTAATGTCGCCAGTCAGTTTCTCC
710 TGTGCGCACA-CCCCC-CCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAG-TTCTCC
** * * *
14282387 GGAGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACGTGCTCGGGCCCAG
772 GGAGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
*
14282452 CATGT-CTTGCCGAAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
837 CATGTGC-TGCCGAAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
14282511 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGTCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14282576 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGAGTCCCCTTCTACGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGCCGATCC
14282641 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14282706 TCGATGAAACGAGCGGGCGGGAGGGCACTGCGCCGGCCTGAGAGACGGGATGCGCAAGCCGTGAA
196 CCGATGAAACGAGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
14282771 TCGATAGGTTGGTAGGTGAGTTTAGGCACATATTCATA-TTCTATGTGCCAATGCCAATTTTATG
261 TCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
* *
14282835 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * * *
14282900 TTCTATTTTTCATGATTTTCAAAATTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGA
391 TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTAGGAAGGA
* * *
14282965 GTTCTACCCCCAAACTTGGTAGATAG-GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
456 GTTTTAGCCCCAAACTTGGTAGA-CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCA
* *
14283029 GCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACT
520 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
14283094 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
585 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
14283159 GGTTTGATGAGGGATAGGGGGCCAATATAAGGG-CAGAGTACCTGCACCCATCGCACATCATGTG
650 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCACCCATCGCACATCATGTG
* * *
14283223 CGCACACCCCCCCGGCCCCCTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAT
714 CGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA-GTTCTCCGGAGAT
* * *
14283288 GCTCCAGCGACGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
778 GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* *
14283353 CT-CTCGCAACCC----T-CGGTCTG------GTCT-GG--T---CT---TA--
843 CTGC-CGAAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14283384 ---A-ACTGAGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGACCGTGCAGCCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * * **
14283445 CAGCCAGAGGGGTGGGATGCGCAAGTCGATGATCGATCGGGTCCCCCTCTGTATGCTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGCCGATCC
* * * ** * ** *
14283510 TACTGCCGCAATCCTCAGACCT-ATCCAATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
131 TGCTGCCACAACCCTC-GGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
14283574 ACCGATGAAACGAGCGGACGGGCGGGCA-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
195 ACCGATGAAACGA---G-CGGGCGGG-AGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * ***
14283638 CGTGGATCGATAGGGTGATAGGTGCGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
255 CGTGGATCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATT
*
14283703 TTTATGGCTTGTAAATTCATACAATGGTCCCTCAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
320 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * ** ** *
14283768 CTCATTTTTTATTTTTCACGATTTTTGATCCTTTTGGCGGTTTGGGATTTTTTAAAATTTCTTCA
385 CTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTT-TTTA
* * *
14283833 GGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAA
449 GGAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* * *
14283898 AATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTTA
514 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
14283963 GACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
579 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
14284028 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATC
644 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
14284093 ATGTGCGCACACCCCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTAAAGTTCTCC
709 ATGTGCGCACACCCCCC-CGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGT-CAGTTCTCC
* * * *
14284158 GGAGATGCTCCGGTGATGGTGCCCCAACGACGAAAAATGCGGCACCAGCACATGCTCGAGCCCAG
772 GGAGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
14284223 CTTGTGCGGTCGAAACCCTTGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATG
837 CATGTGCTGCCGAAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14284282 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGGAACGAGCATGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14284347 CGGCCAAAGGGGCAGGATGCGCAAGCCGGGGATCGGCTGAGTCCCCCTCTGCCTACTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGCCGATCC
* * *
14284412 TGCTGCCCCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14284477 CCGACGAAACAAGCGGGAGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGA
196 CCGATGAAACGAGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
14284542 TCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
261 TCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
14284607 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
326 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
* * *
14284672 TTCTATTTTTCACGATTATCAAAACTTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCA-AAAG
391 TTCTATTTTTCACGATTTTTAAAAC-TTTTTACGGTTTGGGATTTTTTAAAATTTTTT-AGGAAG
* *
14284736 GAGTTTTAGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGGCATGCGCAAAAAAATTC
454 GAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC
14284801 AGCTAAAAACTCGAAGTGTAC------------CCATTTGAAAAAAGTGTCCCCATTTCAGACAC
519 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
14284854 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCG
584 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* *
14284919 AGGTTTGATGAGGGATAGTGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
649 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
14284984 TGCACA-CCCCCGGGCCCCCCTGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCC-GACGA
714 CGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCA-GTTCTCCGGA-GA
* * * * * *
14285047 TGCTCTGACGATGATGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCAGCATGT
777 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * * *
14285112 GCTGCCGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
842 GCTGCCGAAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14285166 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGAGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * * * * * * *
14285231 CGGTCAGAGGGGTAGGATGCGCAAGCCGGGGATCGATCAGGTCCTCCTTTGCGTGTTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGCCGATCC
14285296 TGCTG
131 TGCTG
14285301 TCGTAACCCT
Statistics
Matches: 3236, Mismatches: 375, Indels: 158
0.86 0.10 0.04
Matches are distributed among these distances:
869 169 0.05
870 4 0.00
872 1 0.00
873 81 0.03
874 132 0.04
875 262 0.08
876 113 0.03
877 1 0.00
878 2 0.00
880 48 0.01
881 37 0.01
883 5 0.00
884 260 0.08
885 6 0.00
886 161 0.05
887 4 0.00
888 34 0.01
889 519 0.16
890 21 0.01
891 31 0.01
893 3 0.00
894 1 0.00
895 113 0.03
896 309 0.10
897 156 0.05
898 277 0.09
899 31 0.01
900 1 0.00
901 140 0.04
902 312 0.10
903 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (895 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCATGCTGCCGATCC
TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGATGAAACGAGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTAGGAAGGA
GTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGTTCTCCGGAGATGCT
CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
CCGAAACCCTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14284285 original size:26 final size:26
Alignment explanation
Indices: 14284256--14284308 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14284246 CCGGTCTGAT
14284256 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14284282 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14284308 C
1 C
14284309 CTAAGTCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14285169 original size:26 final size:26
Alignment explanation
Indices: 14285140--14285192 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14285130 CCGATCCGAT
14285140 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14285166 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14285192 C
1 C
14285193 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14285893 original size:26 final size:26
Alignment explanation
Indices: 14285864--14285916 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14285854 CTGATCCGAT
14285864 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14285890 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14285916 C
1 C
14285917 CTAAGTTAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14285896 original size:724 final size:714
Alignment explanation
Indices: 14284600--14285942 Score: 2116
Period size: 724 Copynumber: 1.9 Consensus size: 714
14284590 CCAATGCCAT
*
14284600 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACG
* * * *
14284665 ACTCGTTTTCTATTTTTCACGATTATCAAAACTTTTTTACGGTTTGGGATTTTTTAAAATTTTTT
66 ACTCGTTTTCTATTTTTCACGATTATCAAAACCTTTTTACGGTTCGGGATTTTTAAAAATTTCTT
* *
14284730 CAAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTGGCATGCGCAAAA
131 CAAAAGGAGTTTTAGCCCCAAACTAGGTAGACGTAATCCTTGTATTTTTTTTGGCATGCACAAAA
*
14284795 AAATTCAGCTAAAAACTCGAAGTGTACCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
196 AAATTCAGCTAAAAACTCAAAGTGTACCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * *
14284860 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTT
261 GGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* * *
14284925 GATGAGGGATAGTGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACA
326 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
** * * * *
14284990 CCCCCGGGCCCCCCTGATCGCCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGA
391 CCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGA
* **
14285055 CGATGATGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGC
456 CGATGATGCCCCGACGAAGAAAAATAAGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGC
*
14285120 AACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
521 AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
14285185 CCGTATGCCTAAGTCAACCCA-TGAAACGAGCGTGAGGGTGCTCAACCGGTCAGAGGGGTAGGAT
586 CCGTATGCCTAAGTCAACCCATTG-AACGAGCGTGAGGGTGCTCAACCGGTCAGAGGGGTAGGAT
14285249 GCGCAAGCCGGGGATCGATCAGGTCCTCCTTTGCGTGTTGTCGATCCTGCTGTCGTAACCCTTAG
650 GCGCAAGCCGGGGATCGATCAGGTCCTCCTTTGCGTGTTGTCGATCCTGCTGTCGTAACCCTTAG
* *
14285314 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATAGTAAGACG
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACG
* *** * *
14285379 ACTCGTTTTTTATTTTTCACGATT-TTTGATCCTTTTTGCGGTTCGGGATTTTTAAAAATTTCTT
66 ACTCGTTTTCTATTTTTCACGATTATCAAAACCTTTTTACGGTTCGGGATTTTTAAAAATTTCTT
** * * *
14285443 CGGAAGGAGTTTTGGCCCTAAACTAGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA
131 CAAAAGGAGTTTTAGCCCCAAACTAGGTAGACGTAATCCTTGTATTTTTTTTGGCATGCACAAAA
*
14285508 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTC
196 AAATTCAGCTAAAAACTCAAAGTGTAC------------CCATTTGAAAAAAGTGTCCCCATTTC
* *
14285573 AGACACTTTAATGGCTACTGGTAACAAACCTGTCAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
249 AGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
14285638 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATACGGGCCAAGTACCAGCACCCATCGCACAT
314 TTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
14285703 GATGTGCGC-CACCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGATCAGGTTCTCCG
379 CATGTGCGCACACCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGATCAGGTTCTCCG
* * *
14285767 ACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAAGGCACCAGCACATGCTCAAGCCCAGC
444 ACGATGCTCCGACGATGATGCCCCGACGAAGAAAAATAAGGCACCAACACATGCCCAAGCCCAGC
* *
14285832 ATGTGCTGCCGTAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
509 ATGTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
*
14285897 TGGGAATGAACTCCGTATGCCTAAGTTAACCCATTGAACGAGCGTG
574 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATTGAACGAGCGTG
14285943 CGAGCTCTCA
Statistics
Matches: 568, Mismatches: 48, Indels: 16
0.90 0.08 0.03
Matches are distributed among these distances:
713 115 0.20
714 85 0.15
724 212 0.37
725 156 0.27
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (714 bp):
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACG
ACTCGTTTTCTATTTTTCACGATTATCAAAACCTTTTTACGGTTCGGGATTTTTAAAAATTTCTT
CAAAAGGAGTTTTAGCCCCAAACTAGGTAGACGTAATCCTTGTATTTTTTTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCAAAGTGTACCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
GGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCCGA
CGATGATGCCCCGACGAAGAAAAATAAGGCACCAACACATGCCCAAGCCCAGCATGTGCTGCCGC
AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
CCGTATGCCTAAGTCAACCCATTGAACGAGCGTGAGGGTGCTCAACCGGTCAGAGGGGTAGGATG
CGCAAGCCGGGGATCGATCAGGTCCTCCTTTGCGTGTTGTCGATCCTGCTGTCGTAACCCTTAG
Found at i:14286793 original size:26 final size:26
Alignment explanation
Indices: 14286764--14286816 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14286754 CCGGTCTGAT
14286764 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14286790 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14286816 C
1 C
14286817 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14286865 original size:900 final size:899
Alignment explanation
Indices: 14285314--14286986 Score: 2604
Period size: 900 Copynumber: 1.9 Consensus size: 899
14285304 TAACCCTTAG
** *
14285314 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATAGTAAGACG
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGCAAGACG
* * ** * *
14285379 ACTCGTTTTTTATTTTTCACGATTTTTGATCCTTTTTGCGGTTCGGGATTTTTAAAAATTTCTTC
66 ACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTAAAAATTTCTTC
* * *
14285444 GGAAGGAGTTTTGGCCCTAAACTAGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
131 GGAAGGAGTTTTGGCCCCAAACTAGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
14285509 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCA
196 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCA
* *
14285574 GACACTTTAATGGCTACTGGTAACAAACCTGTCAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
261 GACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14285639 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATACGGGCCAAGTACCAGCACCCATCGCACATG
326 TCTCAAGGTGTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* *
14285704 ATGTGCGCCACCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGATCAGGTTCTCCGAC
391 ATGTGCGCCACCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCACCGATCAGGTTCTCCAAC
*
14285769 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAAGGCACCAGCACATGCTCAAGCCCAGCAT
456 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAAGGCACCAGCACATGCCCAAGCCCAGCAT
*
14285834 GTGCTGCCGTAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
521 GTGCTGCCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * **
14285899 GGAATGAACTCCGTATGCCTAAGTTAACCCATTGAACGAGCGTGCGAGCTCTCAGTCGGCCAGAG
586 GGAATGAACTCCGTATGCCTAAGTCAACCCATCGAACGAGCGTGCGAGCGCTCAACCGGCCAGAG
* * * * *
14285964 GGGCTGGATGCGCCAGTC-AGGGATTGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCA
651 GGGCGGGATGCGCAAG-CGAGGGATCGACCAGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCA
* *
14286028 CAACCCTCAGTCCGGCCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAATGGA
715 CAACCCTCAGTCCGGCCCGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCAATGGA
14286093 ACGAGCGGGCGGGCGGGAGGGGACTACGTCGGCCAGCGAGGTGGGATGTGCAAGCTGTGGATCTA
780 ACGAGCGGGCGGGCGGGAGGGGACTACGTCGGCCAGCGAGGTGGGATGTGCAAGCTGTGGATCTA
14286158 TAGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
845 TAGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
14286213 TTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACG
1 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGCAAGACG
* * *
14286278 GCTTC-TTTTCTATTTTTCACAAATTTTT-AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
66 AC-TCGTTTTCTATTTTTCAC-AATTTTTGAAACTTTTTACGGTTCGAGATTTTTAAAAATTTCT
*
14286341 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAA
129 TCGGAAGGAGTTTTGGCCCCAAACTAGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14286406 ACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTGAAAAAAGTGTCCCCATTC
194 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
*
14286470 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
259 CAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
14286534 GTTCTCAAGGTGTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
324 GTTCTCAAGGTGTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
14286599 TCATGTGCGCGCCCCCCCCCCGGTCCCCCCGATCGCTGGAACCTCAATGCCACCGGTCAGGTTCT
389 TCATGT--GCG-CCACCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCACCGATCAGGTTCT
* * ** *
14286664 CCAACGATTCTCCGACGATGGTGCCTCGACGAAGAAAAATGTGGCACC-GACACATGCCCGAGCC
451 CCAACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAAGGCACCAG-CACATGCCCAAGCC
* * *
14286728 TAGCATGTGCTGCCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTT
515 CAGCATGTGCTGCCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
14286793 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA-CGAAATGAGCGTGCGATCGCTCAACCG
580 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATCG-AACGAGCGTGCGAGCGCTCAACCG
* * *
14286857 GCCAGAGGGGCGGGATGCGCAAGCGGGGGATCGATCAGGTCCCCCTCTGCGTGCTACCGATCCTG
644 GCCAGAGGGGCGGGATGCGCAAGCGAGGGATCGACCAGGTCCCCCTCTGCGTGCTACCGATCCTA
* ** *
14286922 CTGCCACAACCCTCGGTTTGGTCCGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACC
709 CTGCCACAACCCTCAGTCCGGCCCGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACC
14286987 GACGAAACAA
Statistics
Matches: 697, Mismatches: 69, Indels: 15
0.89 0.09 0.02
Matches are distributed among these distances:
897 77 0.11
898 71 0.10
899 212 0.30
900 337 0.48
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATAGCAAGACG
ACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGAGATTTTTAAAAATTTCTTC
GGAAGGAGTTTTGGCCCCAAACTAGGTAGACGTCATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCA
GACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
TCTCAAGGTGTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGCCACCCCCCAGCCCCCCCGATCGCCGAAACCCCAATGCCACCGATCAGGTTCTCCAAC
GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAAGGCACCAGCACATGCCCAAGCCCAGCAT
GTGCTGCCGTAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
GGAATGAACTCCGTATGCCTAAGTCAACCCATCGAACGAGCGTGCGAGCGCTCAACCGGCCAGAG
GGGCGGGATGCGCAAGCGAGGGATCGACCAGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCAC
AACCCTCAGTCCGGCCCGATCTTAGACTAGGAATAAACTCCGTATGCCTAAGCCAACCAATGGAA
CGAGCGGGCGGGCGGGAGGGGACTACGTCGGCCAGCGAGGTGGGATGTGCAAGCTGTGGATCTAT
AGGGTGTTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
Found at i:14293371 original size:26 final size:26
Alignment explanation
Indices: 14293336--14293386 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14293326 TAGTCTGATC
14293336 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTGGGAATGAACTCCGTATGA
*
14293362 TTAGATTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
14293387 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGA
Found at i:14294251 original size:26 final size:26
Alignment explanation
Indices: 14294215--14294266 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14294205 CGGTCCGATG
14294215 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
14294241 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
14294267 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:14296895 original size:26 final size:26
Alignment explanation
Indices: 14296866--14296918 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14296856 CTGGTCCGAT
14296866 CTTAGACTGAGAATGAAC-TCTGTATG
1 CTTAGACTGAGAATGAACTTC-GTATG
* *
14296892 CTTAGACTGGGGATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTTCGTATG
14296918 C
1 C
14296919 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTTCGTATG
Found at i:14298687 original size:26 final size:26
Alignment explanation
Indices: 14298658--14298710 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14298648 CTGGTCTGAT
*
14298658 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
14298684 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
14298710 C
1 C
14298711 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:14300616 original size:141 final size:141
Alignment explanation
Indices: 14300367--14300632 Score: 356
Period size: 141 Copynumber: 1.9 Consensus size: 141
14300357 GCCGTCGGTG
* * * * ** * *
14300367 AGGTTCTCCGGCGATGCTTCGACGATGGTGCCCCGGTGAAGAAAAATTTGGCACCAGTACATGCC
1 AGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATACGGCAACAGCACATGCC
* *
14300432 CGAGCCCAGCATGTGCTGCCGTAACCCTTGGTCCAATTCGATCTTACACTGGGAATGAACCCCAA
66 CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATTCGATCTTACACTGGGAATGAACCCCAA
14300497 TGCCGCCAGTC
131 TGCCGCCAGTC
* *
14300508 AGGTTCTCCAGCTATGCTCCGACGATGGTGCCCTAGCGAAGAAAAATACGGCAACAGCACATGCC
1 AGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATACGGCAACAGCACATGCC
* * * *
14300573 CGAGCCCAGCATGTGCTGTCC-CAACCGTCGGT-CTAGTCTGATCTTAGACTGGGAATGAAC
66 CGAGCCCAGCATGTGCTG-CCGCAACCCTCGGTCCAATTC-GATCTTACACTGGGAATGAAC
14300633 TCCGTATGCC
Statistics
Matches: 107, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
140 4 0.04
141 101 0.94
142 2 0.02
ACGTcount: A:0.24, C:0.30, G:0.26, T:0.21
Consensus pattern (141 bp):
AGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCAGCGAAGAAAAATACGGCAACAGCACATGCC
CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATTCGATCTTACACTGGGAATGAACCCCAA
TGCCGCCAGTC
Found at i:14303557 original size:26 final size:26
Alignment explanation
Indices: 14303521--14303573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14303511 CTGGTTTGAT
14303521 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14303547 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14303573 C
1 C
14303574 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14304061 original size:521 final size:513
Alignment explanation
Indices: 14303087--14304117 Score: 1474
Period size: 521 Copynumber: 2.0 Consensus size: 513
14303077 TGTGGTTCGG
* * ** *
14303087 GATTTTTTAAAATTTTTTTGAAAGGATTTTTGGTGCCAAACTTGGTAGACGTGATCCTTGTATTT
1 GATTTTTAAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
* * *
14303152 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAGTGTACAAGATTTTGTGATCATTTGAAAAAAGT
66 TTGTTGGCATGCACAAAAAAAGTCAGCTAAAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGT
**
14303217 GTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
131 GTCCCCATTTAAGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
14303282 GGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCAC
196 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATACAAGGGCCAAGTACCAGCAC
* * * *
14303347 CCATCGCACATCATGTGCGTACAGCCCCCCCGGCCCCCCGATCACCGGAAACCCAATGCCGCTGA
261 CCATCACACATCATGTGCGCACA-CCCCCCCGGCCCCCCAATCACCGGAAACCCAATGCCGCCGA
* *** * *
14303412 TTAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGCAAAATGCAGCACCAGCACATG
325 TCAGGTTCTCCAAAGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCAGCACCAGCACATG
* * * * ** *
14303477 CCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTTTGATCTTAGACTGGGAATGAACTCC
390 ACCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGATCCGATCTTAAACTGGGAATGAACTCC
* * * *
14303542 GTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACTCACGAAACGAGCGTGA
455 GTATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGA
*
14303601 GATTTTTAAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
1 GATTTTTAAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
*
14303666 TTGTTGGCATGCACAAAAAAAGTCAGCTAAAAACTTGAAGTGCACAAGATTTTGTGGCCATTTGA
66 TTGTTGGCATGCACAAAAAAAGTCAGCT---AA----AAGTGCACAAGATTTTGTGACCATTTGA
* * * *
14303731 AAAAAGTG-CCGTCATTTCAGACATTTTAATAACTACTGGCAGCAATCCTGTAAAATCTCAAATG
124 AAAAAGTGTCC-CCATTTAAGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATG
* *
14303795 CTCTTTAAGGGGGTGTGCGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGT
188 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATACAAGGGCCAAGT
* *
14303860 ACCAGCACCCATCACACATCATGTGTGCACA-CCCCCCGGCCCCCCCAATCGCC-GAAACCCCAA
253 ACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGG-CCCCCCAATCACCGGAAA-CCCAA
* *
14303923 TGCCGCCGGTCAGGTTCTCCAAAGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGCAC
316 TGCCGCCGATCAGGTTCTCCAAAGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCAGCAC
* ** *
14303988 CAGCACATGATCGAGCCCAGCATGTGCTGTCGCAACCCTCGATCCGATCCGATCTTTAAATTGGG
381 CAGCACATGACCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGATCCGATC-TTAAACTGGG
* *
14304053 AATGAACTCTGTATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCATGAAACGAGC
445 AATGAACTCCGTATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGC
14304118 TTGCGGGCAC
Statistics
Matches: 455, Mismatches: 51, Indels: 15
0.87 0.10 0.03
Matches are distributed among these distances:
514 86 0.19
517 2 0.00
519 12 0.03
520 119 0.26
521 236 0.52
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (513 bp):
GATTTTTAAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTT
TTGTTGGCATGCACAAAAAAAGTCAGCTAAAAGTGCACAAGATTTTGTGACCATTTGAAAAAAGT
GTCCCCATTTAAGACACTTTAATAACTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATACAAGGGCCAAGTACCAGCAC
CCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCAATCACCGGAAACCCAATGCCGCCGAT
CAGGTTCTCCAAAGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATGCAGCACCAGCACATGA
CCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGATCCGATCTTAAACTGGGAATGAACTCCG
TATGCCTAGACTGGGAATGAACTCCGTATGCCTAAGTAAACCCACGAAACGAGCGTGA
Found at i:14304600 original size:26 final size:26
Alignment explanation
Indices: 14304562--14304614 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14304552 CCGGTCTGAT
*
14304562 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTAGGAATGAACTCT-GTATG
14304588 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
14304614 C
1 C
14304615 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:14305461 original size:26 final size:26
Alignment explanation
Indices: 14305425--14305477 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14305415 CAGGTCCAAT
*
14305425 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14305451 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14305477 C
1 C
14305478 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14306364 original size:26 final size:26
Alignment explanation
Indices: 14306327--14306379 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14306317 CCAGTCCAAT
* *
14306327 CTTAGACTGGGAATGAACTCCTTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14306353 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14306379 C
1 C
14306380 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14307288 original size:26 final size:26
Alignment explanation
Indices: 14307252--14307302 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14307242 AGTCCGATCA
*
14307252 TAGACTGGGAATGAACTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
14307278 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14307303 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:14308163 original size:26 final size:26
Alignment explanation
Indices: 14308134--14308186 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14308124 CTGGTCCGAT
* *
14308134 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14308160 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
14308186 C
1 C
14308187 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14308488 original size:903 final size:899
Alignment explanation
Indices: 14305134--14315268 Score: 9765
Period size: 903 Copynumber: 11.4 Consensus size: 899
14305124 GTTTCATGGT
* * * *
14305134 AGACATTTTAATGGCTACTGGTAGCAAACCTATAAAATCTCAAATACTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
14305199 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** * *
14305264 CATGTGCGTACA-CCCCCCGACCGCTTGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCG
131 CATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * * * *
14305328 ATGATGCTCTAGTGATGGTGCCCAGGCAAAGAAAAATGCGACACCAGCACTTGCCCGAGCCCAGC
196 ATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
* * * * * *
14305393 ATGTGCTACCGTAACCCTCGATCAGGTCCAATCTTAGACTGGGAATGAACTCTGTATGCTTAGAC
261 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* ** * *
14305458 TGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGAACGTTCAGCCGACCAG
326 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * * *** * * **
14305523 AGGGGTGGGATGCACAAGTCGGGGATCGAAAGGGTCCCCCTCAGCGTGTTACCGATCCTGCTGTC
391 AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTC
* * *
14305588 GCAACCCTCGGTTCGGTCTGATCTTAGACT-GGAATAAACTTCGTATGCCTGAA-CCAACCGACG
456 GCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCT-AAGCCAACCGACG
* * * * * *
14305651 AAACGAGTGGG-AGGGTGGGCGGGTGGGCTCTACGTCGGCTAGAGAGACGGGATGCGCAAGCCGT
520 AAACGAGCGGGCA-----GGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGT
*
14305715 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG-TGTGCCAATGCCATTTT
580 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCT-TGCCAATGCCATTTT
* * * *
14305779 TATGGCTTGTAAATTTATACAACGGTCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGATGACT
644 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
14305844 AGTTTTTTATTTTTCATGATTTTTGAAACTTTTTAGGGTT-GGGTATTTTTTAAAATTTTTTTGG
709 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGG-ATTTTTTAAAATTTTTTCGG
*
14305908 TAGGAGTTTTGGCCCCGAAA-TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
773 AAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
14305972 ATGCAGCTAAAAACTTGAAGTGTACAAGGTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
837 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14306035 AGACACTTTAATGGCTATTGGCAGCAAACCTATAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14306100 TTCTCGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACCAGCACTCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * ** * * * *
14306165 TATGTGCGTACA-CTCCCCGACCCCCCCGATCACCGGAACCCTAATGTCGCTGATCAGGTTCTCC
131 CATGTGCGCACACCCCCCCG-GCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
** * * * **
14306229 GGCGATGCTCCGACAATGGTGCCCCGACGAAGAAAAATGC-AGCACCAACACATGCTTGAGCCCA
195 GATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCA
* ** * * *
14306293 GCATGTGCTGCCGTAACCCTCAATCCAGTCCAATCTTAGACTGGGAATGAACTCCTTATGCTTAG
259 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * *
14306358 ACAGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATACGGGCGCTCAGCCGGCC
324 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
* * ** * * * * *
14306423 AGTGGGGCAGGATATGCAAGCCGGGGATCGGTCGGGCCCCCCTCTGTGTGCTGCCGGTCCTGCTA
389 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
* * ** * *
14306488 TCGCAACCATCAG-TCTGATCTAATTTGATCTTAGACTCAGAATGCACTTCGTATGCCTAAGCCA
454 TCGCAACCCTCAGTTC-GGTC-----TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
14306552 ACTGACGAAATGAGCGGGAGGGCGGGCGGGCGGGCACAACACCGACAAGAGAGACGGGATGCGCA
513 ACCGACGAAACGAGC----GGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCA
* * *
14306617 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCCTACATGCCAATGCC
574 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCC
* * *
14306682 ATTTTTATGGCCTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATTGCAAGA
639 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * **
14306747 CGACTCGTTTTCTATTTTTTAGGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
704 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
*
14306812 TCGGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AA
769 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * * **
14306876 AAAGTTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTATCCATTT
834 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14306941 T
899 C
* * *
14306942 AGACACTTTAGTGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14307007 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTACTAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
14307072 CATGTGCGCACAACCCCCCCTGACCCCACCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCT
131 CATGTGCGCAC-ACCCCCCC-GGCCCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * *
14307137 CGGACGATGCTCCGACGATCGTGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGC
193 C---CGA---T-----GA---TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGC
* * * * *
14307202 ACATGCCCGAG-CCAGCATGTGCTGTCGTAATCCTCGGTCCAGTCCGATCATAGACTGGGAATGA
244 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
*
14307266 ACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG-AA--A-----C-
309 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * *
14307322 -G-GCT---------AGAGGGGTGGGATGCACAAGCCGGGGATCGGCCAGGTCCCCCTCTACGTG
374 GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTG
* * * * * *
14307376 CTGCCGATCCTACTGCCGTAACCCTCAGTCCGGT-TCGATCTTAGACTGGGAATGAACTCCATAT
439 CTGTCGATCCTGCTGTCGCAACCCTCAGTTCGGTCT-GATCTTAGACTGGGAATGAACTCCGTAT
* * ** * * * * *
14307440 GCCTAAGCCAACCGACGAAATGAGTGGGTGGGTGGGCGGGCGGGTACTACGTCGGCCAGGGAGGC
503 GCCTAAGCCAACCGACGAAACGA----GCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGAC
* * ***
14307505 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGTCACATCTTCATATTTCTAAG
564 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCT
* *
14307570 TGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCACGAGAAGTTT
629 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
14307635 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTATGGTTCGGGATTTTT
694 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * *
14307700 TAAAATTTTTTCGGAAAGAGTTTTGGCCCTAAACTTGGAAGACGTGATCCTTGTATTTTTGTTGG
759 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* * * *
14307765 CATGCATAAAACAATTCAGCTAAAAACTCGAAGAGTACAAGATTTTGTGACCATTTGGAAAAAGT
824 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
14307830 GTCCCCATTTC
889 GTCCCCATTTC
* * *
14307841 AAACACATTAAAGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
14307906 TTCTCGAGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
14307971 CATGTGCGCACGGCCCCCCCGGCCCCCCGATCGTCGGAA-CCCAATAGTCGCCGGTCAGGTTCTC
131 CATGTGCGCAC-ACCCCCCCGGCCCCCCGATCGTCGGAACCCCAAT-GCCGCCGGTCAGGTTCTC
* * * * * *
14308035 C-AGTGATGCTCCGACGATGGCGCCCCGACGAAGAAAAATGCGACACCAACACAAGCTCGAGCCT
194 CGA-TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCC
*
14308099 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
258 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
14308164 GACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGC-CAGCCGGC
323 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* *
14308228 CAGAGGGGCGGGATGCGCAAGCCGGGGATTGGTCGGGTCCCCCTCTCCGTGCTGTCGATCCTGCT
388 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
* * * ** * * * *
14308293 ATGGCAACGCTTGGTTCGATCCGATGTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGA
453 GTCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* *
14308358 CGAAACGAGCGGGTGGGCAGGCGGGCGGGCACTGCACCGACCAGAGAGACGGGATGCGCAAGCCG
518 CGAAACGAGC----GGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
* * *
14308423 TGGATTGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTGTGCTTGCCAATGCCATTTT
579 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTT
* * **
14308488 TATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTGATTACAAGACGACT
644 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
14308553 CGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATGTTTTAAAATTTTTTCGAA
709 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* * * * *
14308618 ATGAGTTTTGGCCCCAAACTTGGTAGACGTGATCAC-TGTACTTTAGTTGCCATGCATAAAAAAA
774 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC-CTTGTATTTTTGTTGGCATGCACAAAAAAA
**
14308682 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTTATTTC
838 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14308744 AAACACTTTACTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * * *
14308809 TTATCAAGGATTGATGAGGGATAGAGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCAGAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * *
14308874 CATGTGCGTACACCCCCCCGGCCACCCCGATCACCGAAACCCCAATGCCACCGGTCAGGTTCTCC
131 CATGTGCGCACACCCCCCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* ** *
14308939 GATGGTGCTCCGGCGATGGTGCCCTAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
195 GATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
* * *
14309004 CATGTGCTGCTGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
260 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG-CTTAG
* * * * * * * *** * *
14309069 CCAACCGTCGAAATGAGCGTGCG--GGCACTACGCCGCCAAAGAGACGGGATTTTTTAA-AATTT
324 ---A-C-TGGGAATGAAC-TCCGTATGC-CTA---AGTC-AACCCAC--GA------AACGA--G
** * *** * * * *
14309131 TTTCGACTGGGAATGAACTCCA-TATGCTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACC
368 CGT-G-C-GGG--CG--CT-CAGCCGGC-CAGA--GGG---G--C--GGGATG-C---G-CAAGC
** * * * ** * * ** * ** * * * *** *
14309195 CACGAAACGAG-CGTGTGGGCACTCAGCCG-GCTAGAGGGGT-GGGATG-CCCAAGCCGGGGATC
410 CGGGGATCG-GTCGGGT-CCCCCTCTG-CGTGCT-G-TCGATCCTGCTGTCGCAACCCTCAGTTC
* ***** * * ** *** *
14309256 GATC-GAGTCCCCCTCTGCGTGCTATCG-A-TCC-TGCTGCC--A--CAACCCTCGGTCCGATCC
470 GGTCTGA-TCTTAGACTG-G-G-AAT-GAACTCCGT-ATGCCTAAGCCAACCGACGAAACGA-GC
** * *** * *** * * *
14309313 GATCTTAGACTGGGAATGAACT-CTGTATACCTA-AGCCA-AC-CGA--CACAA--C---GAGCG
528 GGGC--AGGC-GGGCGGGCACTAC-GCCGACC-AGAG--AGACGGGATGCGCAAGCCGTGGATC-
* * * * * ** * *** * **
14309367 GA-CGGGCGG-ACGGGTGGGATATATG-TCGGC--CAGAGAGACGGGATGCACAA-GCCGTGGAT
585 GATAGGGTGGTA--GGTGGG-TTTAGGCACATCTTCATA-TTTCTGCTTGC-CAATGCC----AT
* * * * * *
14309426 CGATAGGGTGGTAGGTGGGTT-TAGGCACATCTTCATATATTTTGCGTGCC--AATGCCATTTTT
641 ---T----T-TTA--TGGCTTGTA---A-A--TTCATACA--ATG-GTCCCTTAA-GCC---TTC
* * * * * * * ****
14309488 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCACGGCAAGGCGACTC
683 A---CGTG-AAGTT--T-C-ATGG---C--AAGAC--GAC-T--CGTTT----TCTA--TTTTTC
* * * * * * * * * *
14309553 GTTTTCTATTTTTTACGA-TTTTCAAAAC-CTATTGCGG-TTCGGCTTTTTTCAAAATTTTTTTG
724 --ATG--ATTTTTGA-AACTTTT---TACGGT-TCG-GGATT---TTTTA----AAATTTTTTCG
* * * *
14309615 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAC
772 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
14309680 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTC
837 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14309743 AGACACTTTAATGGCTACTGGCAGCAATCCTATAAAATCTCAAAAT-CTTTTTAAGGGGGTGTGA
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGA
* * * *
14309807 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTTCCAGCACCCATCACATA
65 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
14309872 TCATGTGTGCACACCCACCCCGGCCCCCTCAATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCT
130 TCATGTGCGCACACCC-CCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * * * *
14309937 CC-AGCGGTGCTCTGGCGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAGCC
193 CCGA-TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
* *
14310001 CAGCATGTGCTACCACAA-CC-C--T-C-G---G----T---C------TG-A-TCCG-AT-CTT
257 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * * *
14310040 AGACTGGGAATGAACTCCGTATGCCTATGTGAACCCACGAAATGAGCGTGCGGGCACTCAACAGG
322 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * *
14310105 CCAGAGGGGTGAGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTTTGTGTGCTGTCGATCCTGC
387 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGC
* * * *
14310170 TGCCGCAACCCTCAATGCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAACCG
452 TGTCGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* *
14310235 ACG-AA--A---TG-A-GCGGGCGGGCACTACGCCGACCAGAGAGACGGGAAGCGCAAGCCGTGG
517 ACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* *
14310292 ATCGATAGGGTCGTAGGTGGGTTTAGGCACATCTTCATATTTCTG-TGTGCCAATGCCATTCTTA
582 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCT-TGCCAATGCCATTTTTA
*
14310356 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
646 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * * *
14310421 TTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTC-AGATTTTTTAAAATTTTTTCAGAAG
711 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
* *
14310485 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTC
776 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
*
14310550 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTC
841 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14310609 AGACACTTTAATGGCTACTGGCAGCAATCCTGTAAAATCTCAAAAGCTTTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14310674 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAC
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * *
14310739 CATGTGCGCACACCCCCCCGACCCCCTCAATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCC
131 CATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * * * *
14310804 GATGATTCTCCGGTGATTGTGCCTCGACGAAGAAAAATAC-AGCACCAGAACATGCCTGAGCTCA
195 GATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCA
*
14310868 GCATGTGCTGCCGTAA-CC-C--T-C-G---G-TC-----C--GG-ATG------G-AT-CTTAG
259 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * *
14310907 ACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGTCGGCC
324 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCC
** * * * * * *
14310972 AGAAAGGCGGGATGCGCAAGCCGGGGATTGGTCGAGTCCCCATCTACGTGATGCCGATCCTG-T-
389 AGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG
* * * * *
14311035 TACTACAACCCTCAG-TCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCTAATC
454 T-C-GCAACCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
14311099 GAC-AAA--A-C--G-A-GCGGGCGGGCACTACGCC-AGCCAGAGAGACGGGATGCGCAAGCCGT
516 GACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCAAGCCGT
* * * * *
14311155 GTACCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAAAGCCATTTTT
580 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTT
*
14311220 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTC
645 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
** * *
14311285 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGTGGTTAGGGATTTTTTAAAATTTTTTCGAAA
710 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAA
** ** * * *
14311350 GGA-TTTT----TTAATA-TTTTTGAAACGTGATCCTTGTATTTTTGTTGGCATTCACAAAACAA
775 GGAGTTTTGGCCCCAA-ACTTGGT-AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
14311409 TTCAGCTAAAAACTTGAGGAGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTC
838 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
14311471 AAACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGTTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
14311536 TTCTCAAGGTTTGATGAGGGATAGTGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *** *
14311601 CATGTGCGCACACCCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCCATTGGTCAGGTACTCC
131 CATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * **
14311666 G-CGATGCTCCGGCGATGGTGCCCCAACGAAAAAAAATATGACACCAGCACATGCCCGAGCCCAG
195 GATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
*
14311730 CATGTGCTGCCGCAA-CC-C---AC-G---G-TC-----C---G---G---TCCG-AT-CTTAGA
260 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * **
14311769 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGTGCTCAATCGGCCA
325 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * * * * **
14311834 GAGGGGCGGGATGGGCAAGTCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCTTGCTAC
390 GAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGT
* ** * *
14311899 CGTAACCCTTGGTTCGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCAACTGACG
455 CGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
14311964 AAACAAGTGGGCGGGCAGGCGGGCACTATGCC-ACCCAGAGAGACGGGATGCGCAAGCCGTGGAT
520 AAACGAGCGGGCAGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCAAGCCGTGGAT
* * *
14312028 CGGTAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA---TT-T--
584 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGG
* * ** *
14312087 -TTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGATGTTGAATGGCAAGATGACTCGTTT
649 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
**
14312151 TCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
714 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * *
14312216 TTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATTCACAAAAAAATTCAG
779 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAG
* *
14312281 CTAAAAACACGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
843 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
14312338 AGACACTTTAATGTCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
14312403 TTCTCGAGGTTTGATGAGGGATAAGGGTCCAATATAAGGGCCAAGTACCAACACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * **
14312468 CATGTGAGCACA-CCCCCCGGCTCCACGATCATCGAAACCGTAATGCCGCCGGTCAGGTTCTCC-
131 CATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * ** *
14312531 ---A-------GCGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTAAGGCCAGC
196 ATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
* *
14312586 ATGTGCCGCCGTAACCCT---T---G---G----T---C------TG-A-TCCG-AT-CTTAGAC
261 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* ** *
14312625 TCGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTTAGCCGGCCAG
326 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
** * * * * * * ** *
14312690 AGGGGCAAGATGTGCAAGTCGGGGATCGGTCGGGTCCTCCTCTGTGAGGTACCAATCCTGCTGTC
391 AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTC
* * * * * * * * * *
14312755 GTAACCCTCAATCCGATCTAATCTTAGACTGGGAATGAACTCCGTTTGCCTGAGTCGACCGATGA
456 GCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * *
14312820 AACGA------A--CGGGCGGGCACTACGTCGACCAGAGAGACAGGAAGCGCAAGCCGTGGATCG
521 AACGAGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* ** *
14312877 ATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-TTTTGTGCCAATGCCATTCTTATGGC
586 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCT-TGCCAATGCCATTTTTATGGC
* *
14312941 TTGTAAATTCATACAATGGTCCCTTACGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTT
650 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* *
14313006 CTATTTTTCATGATTTTTGAAACTTTTTGCGGTTC-AGATTTTTTAAAATTTTTTCGGAAGGAGT
715 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* * * *
14313070 TTTGGCCCCAAACTTCGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCC
780 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
14313135 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAACAGTGTCCCCATTTT
845 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
14313190 AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
14313255 TTCTCAAGGTTTGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
14313320 CGTGTGCGCACA-CCCCCCGGCCCACCCGATCGTTGGAACCCCAA---AGCC-GTC-GG---T-C
131 CATGTGCGCACACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
14313375 ----A-G-T-----GATGGTGCCCC-AGCGAAGAAAAATGCGAGC-CCAGCACATGCCCGAGCCC
195 GATGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCC
* ** * * *
14313427 AGCGTGTGCTATCGCAACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTA
258 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * *
14313492 GATTGGGAATGTACTCCGTATCCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGC
323 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * ** * * * * * *
14313557 GAAAGGGGCAAGATGTGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCATGCTATCGATCCTACT
388 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCT
* * * * *
14313622 GCCGCAACCCTCA-ATCTGGTCTGCTCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAATCG
453 GTCGCAACCCTCAGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* *
14313686 ACG----GAAC--G-A-GCGGGCGGGCACTACGCCGACCAGAGAGACGGGAAGCGCAAGCCGTGG
517 ACGAAACGAGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* * * * *
14313743 TTCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCT-ATGTGCCAACGCCATTCTTA
582 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCT-TGCCAATGCCATTTTTA
* *
14313807 TGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCG
646 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
** * * *
14313872 TTTTCTATTTTTCATGATTTTCAAAACATTTTACGGTTC-AGATTTTTTAAAATTTTTTCAGAAG
711 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAG
** * * *
14313936 GAGTTTTCTCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAACAAAATTC
776 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* * * *
14314001 AGCCAAAAACTCAAAGTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTC
841 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14314060 AGACACTTTAATGGCTACCGGTAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
** * * *
14314125 TTCTTAAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGCC-A--A-C--TA-CCATCACACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
14314183 CATGTGCGCAGACCCCCCTGGCCCCCCGATCGCCAGAACCCCAATGCCACCGGCCAGGTTCTCCG
131 CATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * * *
14314248 ACGATGCTCCGGCAATGTTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCGCAGC
196 ATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
* * * * *
14314313 ATGTGCTGCCGCAACCCTCGATCCGATCCGATGTTAGACTAGGACTGAACTCCGTATGCTTAGAC
261 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * *
14314378 TAGGAATGAACTTCGTATGCCTCAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGTCCAG
326 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* * ** * * **
14314443 AGGGGCAGGATGCACAAATCGGGGATAGG-CTGGGTCCCTCTCTATGTGCTGTCGATCCTGCTGT
391 AGGGGCGGGATGCGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGT
* ** * * *
14314507 TGCAACCCTTTGTTCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
455 CGCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * * **
14314572 AAACGAGCAGGCGGGCGGGCAGGCACTACGCCGGCCAG-GGGATAGGATGCGCAAGCCGTGGATC
520 AAACGAGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * *
14314636 GATAGGGTGGTAGGCGGGTTTAGGCACATCTTTATATTTCTGCGTGCCAATGCCATTTTTATGGC
585 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGC
* * *
14314701 TTGTAAATTCATACAATGGTCCCTTAAGCTTTCGCATGAAGTTTCATGGCAAGACGACTCGTTTT
650 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * ** * *
14314766 CTATGTTTCATGATTTTCGAAACTTTTTACGGTCCGGGATTTTGGAATATTTTTTCGTAAGGAGT
715 CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
* *
14314831 TTTGGCCCCAAACTT-GTAGACGTGCTCCTTGTAGTTTTGTTGGCATGCAC-AAAAAATTCAGCT
780 TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
* *
14314894 AAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAATAAGTGTCCCCATTTC
845 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
14314949 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
1 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * ** *
14315014 TTCTCAAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCTGAGTACCGGCACCCATCGCACAT
66 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * * *
14315079 CATGTGCGCATACCCCCCCAACCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTTC
131 CATGTGCGCACACCCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
14315144 GACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAG
195 GATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
* * * * *
14315209 CATGTGCTGCCACAACTCTCAGTCCGGTCCGATCTTAGACTGGTAATGAACCCCGTATGC
260 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
14315269 CTAAGCCAAC
Statistics
Matches: 7664, Mismatches: 1174, Indels: 796
0.80 0.12 0.08
Matches are distributed among these distances:
843 1 0.00
844 57 0.01
845 2 0.00
846 1 0.00
847 93 0.01
848 3 0.00
849 3 0.00
850 5 0.00
851 1 0.00
852 224 0.03
853 74 0.01
854 92 0.01
855 237 0.03
856 2 0.00
857 1 0.00
858 1 0.00
860 2 0.00
861 246 0.03
862 387 0.05
863 46 0.01
864 16 0.00
865 522 0.07
866 326 0.04
867 218 0.03
868 5 0.00
869 104 0.01
870 602 0.08
871 2 0.00
872 2 0.00
873 2 0.00
874 2 0.00
875 1 0.00
876 2 0.00
877 11 0.00
878 1 0.00
879 1 0.00
881 2 0.00
882 2 0.00
883 302 0.04
884 98 0.01
885 2 0.00
886 2 0.00
887 8 0.00
889 163 0.02
890 205 0.03
891 59 0.01
892 5 0.00
893 2 0.00
894 3 0.00
895 3 0.00
896 33 0.00
897 177 0.02
898 323 0.04
899 199 0.03
901 146 0.02
902 274 0.04
903 774 0.10
904 13 0.00
905 3 0.00
907 209 0.03
908 304 0.04
909 23 0.00
910 42 0.01
912 9 0.00
913 8 0.00
915 8 0.00
916 2 0.00
917 2 0.00
920 3 0.00
921 7 0.00
922 19 0.00
923 98 0.01
924 52 0.01
925 5 0.00
926 1 0.00
927 5 0.00
928 14 0.00
929 19 0.00
930 16 0.00
931 13 0.00
932 23 0.00
933 17 0.00
934 8 0.00
936 5 0.00
937 15 0.00
938 16 0.00
939 4 0.00
940 5 0.00
941 5 0.00
942 5 0.00
943 4 0.00
944 25 0.00
945 21 0.00
946 26 0.00
947 12 0.00
948 16 0.00
949 5 0.00
950 3 0.00
951 5 0.00
952 3 0.00
953 2 0.00
954 2 0.00
955 1 0.00
956 9 0.00
957 3 0.00
958 4 0.00
959 4 0.00
961 3 0.00
962 2 0.00
964 7 0.00
965 5 0.00
967 4 0.00
968 11 0.00
969 5 0.00
970 1 0.00
972 1 0.00
973 4 0.00
974 4 0.00
975 2 0.00
976 6 0.00
977 2 0.00
978 2 0.00
979 4 0.00
983 1 0.00
984 1 0.00
985 2 0.00
987 2 0.00
989 11 0.00
990 1 0.00
991 2 0.00
992 5 0.00
993 2 0.00
994 1 0.00
995 4 0.00
996 1 0.00
998 2 0.00
999 255 0.03
1000 111 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
CATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
ATGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
AGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGTC
GCAACCCTCAGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
AACGAGCGGGCAGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCG
ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCT
TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
Found at i:14311150 original size:865 final size:864
Alignment explanation
Indices: 14309157--14315300 Score: 7353
Period size: 870 Copynumber: 7.1 Consensus size: 864
14309147 ACTCCATATG
* * * *
14309157 CTTAGATTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
14309222 CGGCTAGAGGGGTGGGATGCCCAAGCCGGGGATCGATCGAGTCCCCCTCTGCGTGCTATCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * * * * * *
14309287 TGCTGCCACAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAA
131 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14309352 CCGAC-ACAACGAGCGGACGGGCGGACGGGTGGGATATATGTCGGCCAGAGAGACGGGATGCACA
196 CCGACGA-AACGAGCGGGCGGGC--AC----------TACG-CCGCCAGAGAGACGGGATGCGCA
*
14309416 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATATTTTGCGTGCCAATGC
247 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT-TTCTGCGTGCCAATGC
* * *
14309481 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCACGGCAAG
311 CATTCTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * * * *
14309546 GCGACTCGTTTTCTATTTTTTACGATTTTCAAAACCTATTGCGGTTCGGCTTTTTTCAAAATTTT
376 ACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGATTTTTT-AAAATTTT
* * *
14309611 TTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAA
440 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAA
* *
14309676 AAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATT
505 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
14309741 TCAGACACTTTAATGGCTACTGGCAGCAATCCTATAAAATCTCAAAAT-CTTTTTAAGGGGGTGT
570 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGT
* * * *
14309805 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCAAAGTTCCAGCACCCATCACA
634 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
14309870 TATCATGTGTGCACACCCACCCCGGCCCCCTCAATCGTCGGAACCCCAATGTCGTCGGTCAGGTT
699 CATCATGTGCGCACACCC-CCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * *
14309935 CTCC-AGCGGTGCTCTGGCGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATGCCCGAG
762 CTCCGA-CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * *
14309999 CCCAGCATGTGCTACCACAACCCTCGGT-CTGATCCGAT
826 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGATCCGAT
* * * * *
14310037 CTTAGACTGGGAATGAACTCCGTATGCCTATGTGAACCCACGAAATGAGCGTGCGGGCACTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
14310102 AGGCCAGAGGGGTGAGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTTTGTGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* *
14310167 TGCTGCCGCAACCCTCAATGC-GGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAGT-CTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
14310231 ACCGACGAAATGAGCGGGCGGGCACTACGCCGACCAGAGAGACGGGAAGCGCAAGCCGTGGATCG
195 ACCGACGAAACGAGCGGGCGGGCACTACGCCG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* *
14310296 ATAGGGTCGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTCTTATGGCT
259 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTCTTATGGCT
*
14310361 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTC
324 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
*
14310426 TATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGATTTTTTAAAATTTTTTCAGAAGGAGTTT
389 TATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGATTTTTTAAAATTTTTTCGGAAGGAGTTT
*
14310491 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGGATGCACAAAAAAATTCAGCTAA
454 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
*
14310556 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGACACTTTAAT
519 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * *
14310621 GGCTACTGGCAGCAATCCTGTAAAATCTCAAAAGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTT
584 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
* *
14310686 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACACCATGTGCGCACA
649 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * * * * *
14310751 CCCCCCCGACCCCCTCAATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATTCTCCG
714 CCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCG
* * * * * * * *
14310816 GTGATTGTGCCTCGACGAAGAAAAATACAGCACCAGAACATGCCTGAGCTCAGCATGTGCTGCCG
778 GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
14310881 TAACCCTCGGTCCGGAT-GGAT
843 CAACCCTCGGTCCGGATCCGAT
* * *
14310902 CTTAGACTGGGAATGAACTCCGTACGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * * *
14310967 CGGCCAGAAAGGCGGGATGCGCAAGCCGGGGATTGGTCGAGTCCCCATCTACGTGATGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * ** * * *
14311032 TGTTACTACAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCTAA
131 TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14311097 TCGACAAAACGAGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGTACCGA
196 CCGACGAAACGAGCGGGCGGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* * * *
14311162 TAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGCATGCCAAAGCCATTTTTATGGCTT
260 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTCTTATGGCTT
*
14311227 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGTCTCGTTTTCT
325 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * *
14311292 ATTTTTCATGATTTTTGAAACTTTTTGTGGTT-AGGGATTTTTTAAAATTTTTTCGAAAGGA-TT
390 ATTTTTCATGATTTTCAAAACTTTTTGCGGTTCA--GATTTTTTAAAATTTTTTCGGAAGGAGTT
** ** * * * *
14311355 TT----TTAATA-TTTTTGAAACGTGATCCTTGTATTTTTGTTGGCATTCACAAAACAATTCAGC
453 TTGGCCCCAA-ACTTGGT-AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
* * * * *
14311415 TAAAAACTTGAGGAGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAAACACTTT
516 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* * *
14311480 AATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGTTGTGAGTTCTCAAGG
581 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
* *
14311545 TTTGATGAGGGATAGTGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGC
646 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* *** *
14311610 ACACCCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCCATTGGTCAGGTACTCCG-CGATGCT
711 ACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCT
* * ** *
14311674 CCGGCGATGGTGCCCCAACGAAAAAAAATATGACACCAGCACATGCCCGAGCCCAGCATGTGCTG
775 CCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
*
14311739 CCGCAACCCACGGTCCGG-TCCGAT
840 CCGCAACCCTCGGTCCGGATCCGAT
* * * **
14311763 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGTGGGTGCTCAAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
14311828 CGGCCAGAGGGGCGGGATGGGCAAGTCGGGGATCGATCGGGTCCCCCTCTACGTGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
* * ** *
14311893 TGCTACCGTAACCCTTGGT-TCGGTCTGATCTTAGACTGGGAATGAAGTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14311957 ACTGACGAAACAAGTGGGCGGGCAGGCGGGCACTATGCCACCCAGAGAGACGGGATGCGCAAGCC
195 ACCGACGAAAC----GAGC--G--GGCGGGCACTACGCC-GCCAGAGAGACGGGATGCGCAAGCC
* * *
14312022 GTGGATCGGTAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA---
251 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTC
* * ** *
14312084 TT-T---TTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGATGTTGAATGGCAAGATGAC
316 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* *
14312145 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
381 TCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTC-AGATTTTTTAAAATTTTTTCGG
* *
14312210 AAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATTCACAAAAAA
445 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAA
* *
14312275 ATTCAGCTAAAAACACGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
509 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
14312340 ACACTTTAATGTCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
574 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * *
14312405 CTCGAGGTTTGATGAGGGATAAGGGTCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCA
639 CTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * **
14312470 TGTGAGCACA-CCCCCCGGCTCCACGATCATCGAAACCGTAATGCCGCCGGTCAGGTTCT-C--C
704 TGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGAC
* * ** *
14312531 -A-------GCGATGGTGTCCCGACGAAGAAAAATGTGGCACCAGCACATGCCTAAGGCCAGCAT
769 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * *
14312588 GTGCCGCCGTAACCCTTGGT-CTGATCCGAT
834 GTGCTGCCGCAACCCTCGGTCCGGATCCGAT
* ** *
14312618 CTTAGACTCGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTATGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * ** *
14312683 CGGCCAGAGGGGCAAGATGTGCAAGTCGGGGATCGGTCGGGTCCTCCTCT--GTGAGGTACCAAT
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGT--CGAT
* * * * * * * * *
14312746 CCTGCTGTCGTAACCCTCAATCCGATCTAATCTTAGACTGGGAATGAACTCCGTTTGCCTGAGTC
129 CCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
14312811 GACCGATGAAACGAACGGGCGGGCACTACGTCGACCAGAGAGACAGGAAGCGCAAGCCGTGGATC
194 AACCGACGAAACGAGCGGGCGGGCACTACGCCG-CCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * **
14312876 GATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTTTGTGCCAATGCCATTCTTATGGC
258 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTCTTATGGC
* *
14312941 TTGTAAATTCATACAATGGTCCCTTACGCCTTCACGCGAAGTTTCATGGCAAGACGACTCGTTTT
323 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
**
14313006 CTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGATTTTTTAAAATTTTTTCGGAAGGAGTT
388 CTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
14313071 TTGGCCCCAAACTTCGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCCA
453 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
* *
14313136 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAACAGTGTCCCCATTTTAGACACTTTAA
518 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
*
14313201 TGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
583 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTT
* *
14313266 TGATGAGGGATATGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCGTGTGCGCAC
648 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* *
14313331 A-CCCCCCGGCCCACCCGATCGTTGGAACCCCAA---AGCC-GTC-GG---T----C-A-G-T--
713 ACCCCCCCGGCCC-CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC
* *
14313378 ---GATGGTGCCCC-AGCGAAGAAAAATGCGAGC-CCAGCACATGCCCGAGCCCAGCGTGTGCTA
777 GGCGATGGTGCCCCGA-CGAAGAAAAATGCG-GCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* *
14313438 TCGCAACCCTCGGTCC-GATCTGAT
840 CCGCAACCCTCGGTCCGGATCCGAT
14313462 CTTAGACTGGGAATGAACTTCGTATGCTTAGATTGGGAATGTACTCCGTATCCCTAAGTCAACCC
1 CTTAGACTGGGAATGAAC-TC-----C-------------GTA-T--G----CCTAAGTCAACCC
* * * ** * * * *
14313527 ACGAAACGAGCGTGCGGGCGCTCAGCAGGCGAAAGGGGCAAGATGTGCAAGCCGAGGATCGATCG
40 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCG
* * * * * *
14313592 GGTCCCCCTCTGCATGCTATCGATCCTACTGCCGCAACCCTCAATCTGGTCTGCTCTTAGACTGG
105 GGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGG
* * *
14313657 GAATGAACTCCGTATGCCTATGCCAATCGACGGAACGAGCGGGCGGGCACTACGCCGACCAGAGA
170 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCACTACGCCG-CCAGAGA
* * *
14313722 GACGGGAAGCGCAAGCCGTGGTTCGATAGGGTGGTAGGTGGGTTTAGGCACACCTTCATATTTCT
234 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
** * * *
14313787 ATGTGCCAACGCCATTCTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACATGAAG
299 GCGTGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* *
14313852 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACATTTTACGGTTCAGATTT
364 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGATTT
* ** *
14313917 TTTAAAATTTTTTCAGAAGGAGTTTTCTCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTT
429 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT
* * * *
14313982 GGCATGCACAACAAAATTCAGCCAAAAACTCAAAGTGGACAAGATTTTGTGACCATTTGAAAAAA
494 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
* * * *
14314047 GTGTCCCTATTTCAGACACTTTAATGGCTACCGGTAACAAACCTGTAAAATCTCAAATGCTCTTT
559 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* * *
14314112 AAGGGGGTGTGAGTTCTTAAGGTTTTATGAGGGATAGGGGGCCAATATAAGGGCC-A--A-C--T
624 AAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * *
14314171 A-CCATCACACATCATGTGCGCAGACCCCCCTGGCCCCCCGATCGCCAGAACCCCAATGCCACCG
689 ACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCG
* * *
14314235 GCCAGGTTCTCCGACGATGCTCCGGCAATGTTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
754 GTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT
*
14314300 GCCCGAGCGCAGCATGTGCTGCCGCAACCCTCGATCCGATCCGATGTTAGACTAGGACTGAACTC
819 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG----G-T-C---------C---G---G-A-TC
14314365 CGTAT
861 CG-AT
* * * *
14314370 GCTTAGACTAGGAATGAACTTCGTATGCCTCAGTCAACCCACGAAACGAACGTGCGGGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * *
14314435 CCGTCCAGAGGGGCAGGATGCACAAATCGGGGATAGG-CTGGGTCCCTCTCTATGTGCTGTCGAT
65 CCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGTCGAT
** ** * *
14314499 CCTGCTGTTGCAACCCTTTGT-TCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
129 CCTGCTGCCGCAACCCTCAGTCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * **
14314563 CAACCGATGAAACGAGCAGGCGGGCGGGCAGGCACTACGCCGGCCAG-GGGATAGGATGCGCAAG
193 CAACCGACGAAAC--G-A-GCGGGC--G--GGCACTACGCC-GCCAGAGAGACGGGATGCGCAAG
* *
14314627 CCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTTATATTTCTGCGTGCCAATGCCAT
249 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
* * * *
14314692 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCGCATGAAGTTTCATGGCAAGACG
314 TCTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * * * ** *
14314757 ACTCGTTTTCTATGTTTCATGATTTTCGAAACTTTTTACGGTCCGGGATTTTGGAATATTTTTTC
379 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTC-AGATTTTTTAAAATTTTTTC
* * * *
14314822 GTAAGGAGTTTTGGCCCCAAACTT-GTAGACGTGCTCCTTGTAGTTTTGTTGGCATGCAC-AAAA
443 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAA
* *
14314885 AATTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGACCATTTGAAATAAGTGTCCCCATTTCA
508 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
14314950 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
573 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* ** *
14315015 TCTCAAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGCTGAGTACCGGCACCCATCGCACATC
638 TCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* ** * * *
14315080 ATGTGCGCATACCCCCCCAACCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTTCG
703 ATGTGCGCACACCCCCCC-GGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * * *
14315145 ACGATGCTCTGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGC
767 ACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
14315210 ATGTGCTGCCACAACTCTCAGTCCGG-TCCGAT
832 ATGTGCTGCCGCAACCCTCGGTCCGGATCCGAT
* * * * *
14315242 CTTAGACTGGTAATGAACCCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
14315301 GGCGGGCACT
Statistics
Matches: 4547, Mismatches: 570, Indels: 303
0.84 0.11 0.06
Matches are distributed among these distances:
843 1 0.00
844 84 0.02
845 6 0.00
847 92 0.02
848 2 0.00
849 4 0.00
850 6 0.00
851 3 0.00
852 224 0.05
853 78 0.02
854 92 0.02
855 236 0.05
860 2 0.00
861 256 0.06
862 377 0.08
863 50 0.01
864 15 0.00
865 528 0.12
866 328 0.07
867 343 0.08
868 70 0.02
869 96 0.02
870 582 0.13
871 51 0.01
872 5 0.00
873 4 0.00
875 1 0.00
876 2 0.00
877 1 0.00
878 3 0.00
879 1 0.00
880 186 0.04
881 2 0.00
882 5 0.00
883 204 0.04
884 1 0.00
885 1 0.00
886 1 0.00
887 8 0.00
888 1 0.00
889 164 0.04
890 207 0.05
891 52 0.01
892 3 0.00
893 2 0.00
895 1 0.00
896 27 0.01
897 112 0.02
898 1 0.00
903 1 0.00
905 1 0.00
906 1 0.00
907 3 0.00
908 3 0.00
909 17 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTGTCGATCC
TGCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCACTACGCCGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTCTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCATGATTTTCAAAACTTTTTGCGGTTCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCG
ATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
CCCTCGGTCCGGATCCGAT
Found at i:14313498 original size:26 final size:26
Alignment explanation
Indices: 14313462--14313512 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14313452 CCGATCTGAT
*
14313462 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14313488 CTTAGATTGGGAATGTACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14313513 CCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.25, C:0.16, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14314375 original size:26 final size:26
Alignment explanation
Indices: 14314339--14314397 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
14314329 CTCGATCCGA
*
14314339 TCCG-ATG-TTAGACTAGGACTGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
14314363 TCCGTATGCTTAGACTAGGAATGAAC
1 TCCGTATGCTTAGACTAGGAATGAAC
*
14314389 TTCGTATGC
1 TCCGTATGC
14314398 CTCAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTAGGAATGAAC
Found at i:14315962 original size:714 final size:713
Alignment explanation
Indices: 14314523--14316692 Score: 3315
Period size: 710 Copynumber: 3.0 Consensus size: 713
14314513 CCTTTGTTCA
* *
14314523 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-AGGCGGG
1 GTCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCGACGAAACGAGCGA-GCGGG
* * ** *
14314587 CGGGCAGGCACTACGCCGGCCAG-GGGATAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGC
65 CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * *
14314651 GGGTTTAGGCACATCTTTATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
130 GGGTTTAGGCACGTCTTCATATTTTTGCGTGCCAATGCTATTTTTATGGCTTGTAAATTCATAAA
* * * * * *
14314716 ATGGTCCCTTAAGCTTTCGCATGAAGTTTCATGGCAAGACGACTC-GTTTTCTATGTTTCATGAT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGGTTTT-TATTTTTCACGAT
* * ** * * *
14314780 TTTCGAAACTTTTTACGGTCCGGGATTTTGGAATATTTTTTCGTAA-GGAGTTTTGGCCCCAAAC
259 TTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTGTCGTAACGG-TTTTTGGCCCCAAAC
* * * * *
14314844 TT-GTAGACGTGCTCCTTGTAGTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGT
323 TTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAGAAATCAGCTAAAAACTAGAAGT
* * * *
14314907 GTGCAAGATTTTGTGACCATTTGAAATAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
388 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTATTGGCA
* *
14314972 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATTAGGGATA
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
14315037 GGGGGCCAATATAAGGGCTGAGTACCGGCACCCATCGCACATCATGTGCGCATACCCCCCCAACC
518 GGGGGCCAATATAAGGGC-GAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCAACC
* *
14315102 CCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTTCGACGATGC-TCTGACGATGGTGC
581 CCCCCGATCGTCGGAACCCTAATGCCGTCGGTTAGGTTCTCCGACGATGCTTC-GACGATGGTGC
* * * *
14315166 CCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACTCTCAG
645 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAG
14315231 TCCG
710 TCCG
*
14315235 GTCCGATCTTAGACTGGTAATGAACCCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGC
1 GTCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGC
*
14315300 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * * *
14315365 GGTTTAGGCATGTGTTCATATTTTTGCATGCCAATGCTATTTTTATGGCATGTAAATTCATAGAA
131 GGTTTAGGCACGTCTTCATATTTTTGCGTGCCAATGCTATTTTTATGGCTTGTAAATTCATAAAA
14315430 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGGTTTTTATTTTTCACGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGGTTTTTATTTTTCACGATTT
* *
14315495 TTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTGTCGTAACGGTTTTTGGCCCCAAACTTG
261 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTGTCGTAACGGTTTTTGGCCCCAAACTTG
14315560 GTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAGAAATCAGCTAAAAACTAGAAGTGTA
326 GTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAGAAATCAGCTAAAAACTAGAAGTGTA
*
14315625 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACAATTTAATGGCTATTGGCAGCA
391 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTATTGGCAGCA
14315690 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
456 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
** * * *
14315755 GGCCAATATAAGGGTCGAGTATTAGCACCTATCACACATCATTTACGCACACCCCCCAACCCCCC
521 GGCCAATATAAGGG-CGAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAACCCCCC
* *
14315820 CGATCGCCGGAACCCTAATGCTGTCGGTTAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGA
585 CGATCGTCGGAACCCTAATGCCGTCGGTTAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGA
* *
14315885 CGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAAAACCCTCAGTCCG
650 CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCCG
*
14315949 GTCCGATCTTAGACTGGTAATGAACCCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGGGC
1 GTCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGC
* *
14316010 GGGCGAGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
**
14316075 GGTTTAGGCACGTCTTCATATTTTTATGTGCCAATGCTATTTTTATGGCTTGTAAATTCATAAAA
131 GGTTTAGGCACGTCTTCATATTTTTGCGTGCCAATGCTATTTTTATGGCTTGTAAATTCATAAAA
*
14316140 TAGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGGTTTTTATTTTTCACGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGGTTTTTATTTTTCACGATTT
14316205 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTGTCGTAACGGTTTTTGGCCCCAAACTTG
261 TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTGTCGTAACGGTTTTTGGCCCCAAACTTG
14316270 GTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAGAAATCAGCTAAAAACTAGAAGTGTA
326 GTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAGAAATCAGCTAAAAACTAGAAGTGTA
*
14316335 CAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACAATTTAATGGCTATTGGCAGCA
391 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTATTGGCAGCA
*
14316400 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GG
456 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * ***
14316464 GGCCTAATATAAGGGCCAAGCACCAGCACCCATCACACATCATGTGCGGACACCCCCCGGTCCCC
521 GGCC-AATATAAGGG-CGAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAACCCCC
* * * *
14316529 CCGATCGTCGGAACCCTAATGCCGTCAGTTAGGTTCTCCGTCGATGCTCCGGCGATGGTGCCCC-
584 CCGATCGTCGGAACCCTAATGCCGTCGGTTAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCG
* * * * *** *
14316593 AGTGAAGAGAAATACAGCACCAGCACATGCCCGAGCCCAAG-ATGTACTGTTGCAACCCTCGGTC
649 A-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC-AGCATGTGCTGCCACAACCCTCAGTC
14316657 CG
712 CG
* *
14316659 GTCCGATCTTAGACTGGGAATGAACTCTGTATGC
1 GTCCGATCTTAGACTGGGAATGAACCCCGTATGC
14316693 TTAGATTGGG
Statistics
Matches: 1337, Mismatches: 110, Indels: 24
0.91 0.07 0.02
Matches are distributed among these distances:
709 7 0.01
710 633 0.47
711 3 0.00
712 81 0.06
713 201 0.15
714 222 0.17
715 189 0.14
716 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.27
Consensus pattern (713 bp):
GTCCGATCTTAGACTGGGAATGAACCCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGC
GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACGTCTTCATATTTTTGCGTGCCAATGCTATTTTTATGGCTTGTAAATTCATAAAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGGTTTTTATTTTTCACGATTT
TTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTGTCGTAACGGTTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAGAAATCAGCTAAAAACTAGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAATTTAATGGCTATTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCGAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCAACCCCCCC
GATCGTCGGAACCCTAATGCCGTCGGTTAGGTTCTCCGACGATGCTTCGACGATGGTGCCCCGAC
GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCAGTCCG
Found at i:14316702 original size:26 final size:26
Alignment explanation
Indices: 14316666--14316718 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14316656 CCGGTCCGAT
*
14316666 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14316692 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14316718 C
1 C
14316719 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Done.