Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 73 of 195
Found at i:14470285 original size:12 final size:12
Alignment explanation
Indices: 14470268--14470293 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
14470258 CCGATGAACC
14470268 GAGCGGGCGGGT
1 GAGCGGGCGGGT
14470280 GAGCGGGCGGGT
1 GAGCGGGCGGGT
14470292 GA
1 GA
14470294 ACGGACGGGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.12, C:0.15, G:0.65, T:0.08
Consensus pattern (12 bp):
GAGCGGGCGGGT
Found at i:14471850 original size:26 final size:26
Alignment explanation
Indices: 14471807--14471858 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14471797 TCCGGTCCGA
*
14471807 TCTTAGACTGAGATTGAACTCCATAT
1 TCTTAGACTGAGAATGAACTCCATAT
*
14471833 TCTTAGACTGGGAATGAACTCCATAT
1 TCTTAGACTGAGAATGAACTCCATAT
14471859 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.17, T:0.33
Consensus pattern (26 bp):
TCTTAGACTGAGAATGAACTCCATAT
Found at i:14472763 original size:26 final size:26
Alignment explanation
Indices: 14472711--14472766 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
14472701 CTGGTCCGAT
* **
14472711 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAGGAACTCCAAATG
*
14472737 CTTAGACTGGGAAGGAACTCTAAATG
1 CTTAGACTGGGAAGGAACTCCAAATG
14472763 CTTA
1 CTTA
14472767 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAAGGAACTCCAAATG
Found at i:14473640 original size:26 final size:26
Alignment explanation
Indices: 14473602--14473657 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
14473592 CCGGTCCGAT
* *
14473602 CTTACACTTGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
*
14473628 CTTAGACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
14473654 CTTA
1 CTTA
14473658 AGTCAATCCA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:14475422 original size:26 final size:26
Alignment explanation
Indices: 14475393--14475445 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14475383 CTGGTCCGAT
*
14475393 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
*
14475419 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
14475445 C
1 C
14475446 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:14477364 original size:404 final size:404
Alignment explanation
Indices: 14476608--14477417 Score: 1264
Period size: 404 Copynumber: 2.0 Consensus size: 404
14476598 CGTGCCAATG
* *
14476608 CCATTTTTATGCCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
1 CCATTTTTATGCCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACATGAAGTTTCATGGCAA
* *
14476673 GACGACTCGTTTCCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTT
66 GACGACTCGTTTCCTATTTTTCAAGATTTTTAAAACTTTTTACAGTTCAGGATTTTTTAAAATTT
* * * *
14476738 CGTCGAAAGGTGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACA
131 CGTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACA
* * *
14476803 AAAACATTCAGCTAAAAACTCGAACCGAACAAGATTTTGTGACCATTTCAAAAAAGTGTTCCCAT
196 AAAACATTCAGCTAAAAACTCAAACCGAACAAGATTTTGTGACAATTTCAAAAAAGTGTCCCCAT
* *
14476868 TTCAGACACTTTAATTGCTACTAGCAGTAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTGTG
261 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTGTG
* *
14476933 AGTTCTCGAGGTTTGATGAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTAC
326 AGTTCTCGAGGTTTGATAAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
14476998 ATCATATACGCACA
391 ATCATATACGCACA
*
14477012 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACATGAAGTTTCATGGCAA
1 CCATTTTTATGCCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACATGAAGTTTCATGGCAA
* * * *
14477077 GACGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTT
66 GACGACTCGTTTCCTATTTTTCAAGATTTTTAAAACTTTTTACAGTTCAGGATTTTTTAAAATTT
** *
14477142 TTTCG-AAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCATA
131 CGTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACA
** ** ** *
14477206 AAAA-ATTCAGCTAAAAACTCAAAGTGTCCAAGATTTTGTGACAATTTGGACAAAGTGTCCCCAT
196 AAAACATTCAGCTAAAAACTCAAACCGAACAAGATTTTGTGACAATTTCAAAAAAGTGTCCCCAT
* *
14477270 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAAGGGGGTG
261 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTC-TTTAA-GGGGTG
* *
14477335 TGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGC
324 TGAGTTCTCGAGGTTTGATAAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* *
14477400 ACATCATGTGCGCACA
389 ACATCATATACGCACA
14477416 CC
1 CC
14477418 CCCCGATCCC
Statistics
Matches: 368, Mismatches: 36, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
402 98 0.27
403 63 0.17
404 207 0.56
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (404 bp):
CCATTTTTATGCCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACATGAAGTTTCATGGCAA
GACGACTCGTTTCCTATTTTTCAAGATTTTTAAAACTTTTTACAGTTCAGGATTTTTTAAAATTT
CGTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGCACA
AAAACATTCAGCTAAAAACTCAAACCGAACAAGATTTTGTGACAATTTCAAAAAAGTGTCCCCAT
TTCAGACACTTTAATGGCTACTAGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTGTG
AGTTCTCGAGGTTTGATAAGCGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATATACGCACA
Found at i:14478468 original size:26 final size:26
Alignment explanation
Indices: 14478431--14478483 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14478421 CTGGTCCAAT
14478431 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14478457 CTTAGA-TAGGGAATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14478483 C
1 C
14478484 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14479302 original size:900 final size:900
Alignment explanation
Indices: 14477557--14479438 Score: 2684
Period size: 900 Copynumber: 2.1 Consensus size: 900
14477547 TCGATCCGAT
* ** *
14477557 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCTGGCTCTTAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCAAGCGCTTAAG
* *
14477622 CGGCCAGAGGGGCGGGATGCGCGAGCAGGGGATCGACCGGGTTCCCCTTTGCGTGCTGCCAATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGACCGGGTTCCCCTTTACGTGCTGCCAATCC
* * * * *
14477687 TATTGTCGCAACCCTCGGTCCGGTCTGATCTTATACTGGGAATGATCTTCGTATCCCTAAGCCAA
131 TACTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATCCCTAAGCCAA
* * * * *
14477752 CCGACGAAATGAGCGAGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
196 CCGACGAAACGAGCGAGCGGCCGGGCGGGCACTACGCCAGCCAGAGAGACGGAATGCGCAAGCCA
* *
14477817 TGGATCGATTGGGCGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
261 TGGATCGATAGGGCGATAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
* *
14477882 TATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACT
326 TATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAAACAACT
* * * *
14477947 CGTTTTTATTTTTCACGATTTTCAAAACTTTTTACGGTTTGGGATTTTTTCAAATTTTTTCGGAA
391 CGTTTTTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGATTTGTTAAAATTTTTTCGGAA
* ***
14478012 GGGGTTTTGGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATT
456 GGAGTTTTACACCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATT
* * ** *
14478077 CAGCAAGAGACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
521 CAGCAAGAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACA
* * * * *
14478142 CTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTTAAATTCTCTTTAAGGGGGTGTGAGTTCTC
586 CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTC
* *
14478207 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCACCCATCGTACATCATGT
651 AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCAACCATCGCACATCATGT
* * * * * *
14478272 GCGCATACCCCTACCGACCCCCTCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACG
716 GCGCACACCCCTACCGACCCCCCCGATCGCCCGAACCCCAATGCCGTCGGTCAAGTTCTCCAACG
*
14478337 ATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCAACACCAGCACATGCCCGAGCCCAGCATG
781 ATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCAACACCAACACATGCCCGAGCCCAGCATG
** * * *
14478402 TGCTGTCGTAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATG
846 TGCTACCGTAACCCTCGATCCGGTCCAATCTTAGACTGGAAATGAACTCCGTATG
* ** * *
14478457 CTTAGA-TAGGGAATGAACTCCGTATGCCTAAGTCAAAGCATGAAATTAGTGTGCAAGCGC-TCA
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCAAGCGCTTAA
* * * * * *
14478520 GTCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGACCGGG-TCCCCTTCTATGTGTTGTCGA
65 G-CGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGACCGGGTTCCCCTT-TACGTGCTGCCAA
* * * * * * * *
14478584 TCCTGCTATTGCATCCCTTGGTCGGGTTTGATCTTAGACTAGGAATGAACTTCGTATGCTTAAGC
128 TCCTACTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATCCCTAAGC
*
14478649 CAACCGACGAAACGAGCGGGCGGCCGGGCGGGCACTACGCCAGCCAGAGAGACGGAATGCGCAAG
193 CAACCGACGAAACGAGCGAGCGGCCGGGCGGGCACTACGCCAGCCAGAGAGACGGAATGCGCAAG
** * *
14478714 TTATGGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
258 CCATGGATCGATAGGGCGATAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* *
14478779 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACA
323 TTTTATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAAACA
* * *
14478844 ACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTGCAGTTCGGGATTTGTTAAAATTTTTTC
388 ACTCGTTTT-TATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGATTTGTTAAAATTTTTTC
* * *
14478909 GGAAGGAG-TTTACACCGCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCATAAAA
452 GGAAGGAGTTTTACACC-CAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAA
* * *
14478973 ACATTCAGCTAA-AAACTCGAACTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTTCCCATTC
516 AAATTCAGC-AAGAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTC
14479037 CAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
580 CAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
14479102 CTTTTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCAACCATCGCACA
645 CTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCAACCATCGCACA
* *
14479167 TCATGTGCGCACACCCC-CCCGGCCCCCCCGATCGCCCGAACCCCAATGCCGTCGGTCAAGTTCT
710 TCATGTGCGCACACCCCTACCGACCCCCCCGATCGCCCGAACCCCAATGCCGTCGGTCAAGTTCT
*** ** * *
14479231 CCAACGATGCTCTGGCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAACACATGCTCGAGCCC
775 CCAACGATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCAACACCAACACATGCCCGAGCCC
*
14479296 AGCATGTGCTACCGTAACCCTCGATCCGGTCCAATCTTAGACTGGAAATGAACTCTGTATG
840 AGCATGTGCTACCGTAACCCTCGATCCGGTCCAATCTTAGACTGGAAATGAACTCCGTATG
* * ** *
14479357 CTT-GACTGGGAATGAACTCCGTATGCCTAAGTC-AACTCACGAAACGAGCATGCGGGCGC-TCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAAC-CATGAAACGAGCGTGCAAGCGCTTAA
*
14479419 GCCGGCCAGAGGGGTGGGAT
65 G-CGGCCAGAGGGGCGGGAT
14479439 CTTAGACTAG
Statistics
Matches: 865, Mismatches: 109, Indels: 17
0.87 0.11 0.02
Matches are distributed among these distances:
898 2 0.00
899 75 0.09
900 497 0.57
901 289 0.33
902 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCATGAAACGAGCGTGCAAGCGCTTAAG
CGGCCAGAGGGGCGGGATGCGCAAGCAGGGGATCGACCGGGTTCCCCTTTACGTGCTGCCAATCC
TACTATCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTTCGTATCCCTAAGCCAA
CCGACGAAACGAGCGAGCGGCCGGGCGGGCACTACGCCAGCCAGAGAGACGGAATGCGCAAGCCA
TGGATCGATAGGGCGATAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTT
TATGGCTTGTAAATCCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAAACAACT
CGTTTTTATTTTTCACGATTTTCAAAACTTTTTACAGTTCGGGATTTGTTAAAATTTTTTCGGAA
GGAGTTTTACACCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATT
CAGCAAGAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAAACA
CTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTC
AAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCAACCATCGCACATCATGT
GCGCACACCCCTACCGACCCCCCCGATCGCCCGAACCCCAATGCCGTCGGTCAAGTTCTCCAACG
ATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGCAACACCAACACATGCCCGAGCCCAGCATG
TGCTACCGTAACCCTCGATCCGGTCCAATCTTAGACTGGAAATGAACTCCGTATG
Found at i:14479370 original size:25 final size:25
Alignment explanation
Indices: 14479335--14479382 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
14479325 TCCAATCTTA
*
14479335 GACTGGAAATGAACTCTGTATGCTT
1 GACTGGAAATGAACTCCGTATGCTT
*
14479360 GACTGGGAATGAACTCCGTATGC
1 GACTGGAAATGAACTCCGTATGC
14479383 CTAAGTCAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
GACTGGAAATGAACTCCGTATGCTT
Found at i:14480310 original size:827 final size:827
Alignment explanation
Indices: 14478660--14481837 Score: 3266
Period size: 827 Copynumber: 3.8 Consensus size: 827
14478650 AACCGACGAA
* * * * *
14478660 ACGAGCGGGCGGCCGGGCGGGCACTACGCCAGCCAGAGAGACGGAATGCGCAAGTTATGGATCGA
1 ACGAGCGGACGG-TGGGCGGGCACTACGCCGGCCAGAGAGACAGAATGCGCAAGCTATGGATCGA
* ***
14478725 TAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTT
65 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTT
* *
14478790 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAAACAACTCGTTTTCT
130 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
* * * *
14478855 ATTTTTCATGATTTTCGAAACTTTTTGCAGTTCGGGATTTGTTAAAATTTTTTCGGAAGGAGTTT
195 ATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
*** * * * *
14478920 ACACCGCAAACTTGGTAGACGTGATCCTTGT-TTTTTTGTTGGCATGCATAAAAACATTCAGCTA
260 TGGCCACAAACTTGGTAGACATGATCCTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGCTA
* * * * *
14478984 AAAACTCGAACTGTACAAGATTTTGTGACCATTTGGAAAAAGTGTTCCCATTCCAAACACTTTAA
324 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
14479049 TGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTTTCGAGGTT
389 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* *
14479114 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCCGCAACCATCGCACATCATGTGCGCAC
454 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * ** * *
14479179 ACCCCCCCGGCCCCCCCGATCGCCCGAACCCCAATGCCGTCGGTCAAGTTCTCCAACGATGCTCT
519 ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGACCATCAAGTTCTCCAGCGATGCTCC
** * * *
14479244 GGCGATGGTGCCCCGGTGAAGAAAAATGCGACACCAACACATGCTCGAGCCCAGCATGTGCTACC
584 GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC
*
14479309 GTAACCCTCGATCCGGTCCAATCTTAGACTGGAAATGAACTCT-GTATGCTTGACTGGGAATGAA
649 GTAA-CC-C--T-CGGTCCGATC-----C-GG-AAT--ACTCTAGTA-GC-T-A---GGAATGAA
* * * * *
14479373 CTCCGTATGCCTAAGTCAACTCACGAAACGAGCATGCGGGCGCTCAGCCGGCCAGAGGGGTGGGA
694 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGG-AGGA
* * * * * *
14479438 ------TCT-TA---G--ACTA-G-GAATG-AA-CTTC-GT--A-T--G-CCTAAGCGAACTGAC
758 TCCCCCTCTGTATCTGTCATTATGTG-CTGCAACCCTCGGTCCAGTCCGATCTAAGTGAACCGAC
14479480 AAAATG
822 AAAATG
* * * * *
14479486 AGCGGGCGGACGGGTGGGCGGGCACTACACCGGCTAGAGAGACAGAATGCGCAAGCTGTGAATCG
1 A-CGAGCGGAC-GGTGGGCGGGCACTACGCCGGCCAGAGAGACAGAATGCGCAAGCTATGGATCG
* *
14479551 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGCATGCCAACGCCATTTTTATGGCT
64 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCT
14479616 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
129 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
* * * * *
14479681 AATTTTTTATGATTTTTTAAACTTTTCACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTT
194 TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * * * *
14479746 TTGG-CACCAAACTTAGTAGACGTGATCCTTGTACTTTTTTTGGCTTGCACAAAAAAATTAAGCT
259 TTGGCCA-CAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCT
* *
14479810 AAACACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTGAGACACTTTA
323 AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* *
14479875 ATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGT
388 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
*
14479940 ATGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
453 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
* * *
14480005 CACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGCCCATCATGTTCTCCGGCGATGCTC
518 CACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGACCATCAAGTTCTCCAGCGATGCTC
* * * ** *
14480070 CGGCAATGGTGCCCCGACGAAAAAAAATACGGCACCAGTGCATGCTTGAGCCCAGCATGTGCTGC
583 CGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGC
*
14480135 CATAACCCTCGGTCCGATCC-G-AT-CT-TAG-AG-TAGGAATGAACTCCGTATGCCTAAGTCAA
648 CGTAACCCTCGGTCCGATCCGGAATACTCTAGTAGCTAGGAATGAACTCCGTATGCCTAAGTCAA
* *
14480194 CCCATGAAATGAGCGTGCGGGCGCTCAGCCGACCAAAGGGGCAGGATCCCCCTCTGTATGCTGTC
713 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGG-AGGATCCCCCTCTGTAT-CTGTC
14480259 AATTATGTTGCTGCAACCCTCGGTCCAGTCCGATCTAAGTGAACCGAC-AAA--
776 -ATTATG-TGCTGCAACCCTCGGTCCAGTCCGATCTAAGTGAACCGACAAAATG
* * * ** ** * * * **
14480310 ACGTGCGGTC---GGGCAGGCGTTACGCCTTCCAGATAGACGGGATGCGCAAGCCGTGGATCGAT
1 ACGAGCGGACGGTGGGCGGGCACTACGCCGGCCAGAGAGACAGAATGCGCAAGCTATGGATCGAT
* *
14480372 AGGGTGGTAGGTGGATATAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
66 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
* * * * *
14480437 CAAATTCATACAATGGTCCCTAAAGCCTTCACGTGAAGTTTCATGGCAAGCCGACCCGTTTTTTA
131 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * * *
14480502 TTTTTCACGATTTTTAAAACTTTTTACGGTAT-GAGATTTTTTAAAATTTTTTCGGAAGGAATTT
196 TTTTTCATGATTTTTGAAACTTTTTACGGT-TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * * *
14480566 TGGCCTCAAACTTGGTAGACATGGTCCTTGTTTTTTTTTTTGGCATTCATAAAAAAATTCAGCTA
260 TGGCCACAAACTTGGTAGACATGATCCTTG-TATTTTTTTTGGCATGCACAAAAAAATTCAGCTA
14480631 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
324 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* *
14480696 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTT
389 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * * * *
14480761 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGAACCCGTCGTACCT-ATGTGCGCAT
454 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
14480825 A-CCCCCCGGCCCCCCC-ATCGTCGAAACCCCAA---T-ACCA-C-CG--GT-CAG-G-TTCTCC
519 ACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGACCATCAAGTTCTCCAGCGATGCTCC
* * * *
14480877 GGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTC
584 GGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC
* *
14480942 GCAACCCTCGGTCCAGTCCGATCTTAACCAGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
649 GTAACCCTC-G----GTCCGA---T--CC-GGAAT--ACT-C-TA-G--TAG-CTAGGAATGAAC
* * *
14481007 TCTGTATGCCTAAGTCAACCCACGAAACGAACGTTCGGGCGCTCAGCC-AGCCAAAGGGGAGGGA
695 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAAAGGGGA-GGA
* * * * * *
14481071 TGCGCAAGCCAGGGATCGATCGGGTCCCCCTCTGCGTGCTGTTGATCCTACTACCATAACCCTCG
758 T-C-C---CC------C--TC-TGT----ATCT--GT-C-ATT-AT-GTGCT-GC--AACCCTCG
*
14481136 GTCCGGTCCGATCTCAGACTGGGAATGAACTTCGTATGCCTAAGCCAACTG
796 GTCCAGTCCGATCT-A-A----G--TGAAC--CG-A---C-AA---AA-TG
** * * * * *
14481187 ACGAGATGA-GCGTGCAGGCGGGCACAACGTCGGCTAGAGAGACAGGATGCGCAAGCTATGTATC
1 ACGAGCGGACG-GTG--GGCGGGCACTACGCCGGCCAGAGAGACAGAATGCGCAAGCTATGGATC
* * *
14481251 GATAGGGTGGTTGGTGGGTTTAGGCACATCTTCATATATTTTGCGTGCCAATGCCATTTTTATGG
63 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT-TTCTGCATGCCAATGCCATTTTTATGG
* * * *
14481316 CTTGTAAATTCATACACTGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGATGGCTCGTTT
127 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
14481381 TTTATTTTTCATGATTTTTGAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGAG
192 TCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * *
14481446 TTTTAGCCATAAACTTGGTAGACATGATCCTCGTATTTTTTTTGGCATGCACAAAAAAAATCAGC
257 TTTTGGCCACAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
*
14481511 TAAATACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
322 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
14481576 AATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
387 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* *
14481641 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATGGCACATCATGTACGC
452 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * *
14481706 ACA---------CCCCCCCGATCG-CTGGAACCCTAATGCCGTCGATCAGGTTCTCCAGCGAAGC
517 ACACCCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGCTGACCATCAAGTTCTCCAGCGATGC
* * * * * *
14481761 TCCGAG-GATGTTGCCACGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCTGTATGTGC
581 TCCG-GCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGC
* *
14481825 TACCGCAACCCTC
645 TGCCGTAACCCTC
14481838 AGTCTGGTCC
Statistics
Matches: 1970, Mismatches: 250, Indels: 203
0.81 0.10 0.08
Matches are distributed among these distances:
802 65 0.03
805 1 0.00
806 68 0.03
807 2 0.00
808 6 0.00
809 5 0.00
810 3 0.00
811 7 0.00
812 1 0.00
813 6 0.00
814 2 0.00
815 1 0.00
816 5 0.00
817 17 0.01
818 18 0.01
819 254 0.13
820 205 0.10
821 2 0.00
822 11 0.01
823 9 0.00
824 2 0.00
825 3 0.00
826 9 0.00
827 579 0.29
828 7 0.00
829 2 0.00
830 2 0.00
831 66 0.03
832 1 0.00
833 1 0.00
836 2 0.00
842 1 0.00
844 2 0.00
845 2 0.00
848 2 0.00
849 1 0.00
850 2 0.00
851 3 0.00
852 5 0.00
853 1 0.00
855 21 0.01
856 1 0.00
857 1 0.00
861 1 0.00
863 5 0.00
865 2 0.00
866 1 0.00
869 1 0.00
871 1 0.00
874 2 0.00
875 8 0.00
876 12 0.01
877 5 0.00
880 3 0.00
881 1 0.00
882 275 0.14
883 176 0.09
884 1 0.00
885 3 0.00
886 1 0.00
887 67 0.03
888 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (827 bp):
ACGAGCGGACGGTGGGCGGGCACTACGCCGGCCAGAGAGACAGAATGCGCAAGCTATGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
GGCCACAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCTGACCATCAAGTTCTCCAGCGATGCTCCGG
CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGT
AACCCTCGGTCCGATCCGGAATACTCTAGTAGCTAGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGACCAAAGGGGAGGATCCCCCTCTGTATCTGTCATTAT
GTGCTGCAACCCTCGGTCCAGTCCGATCTAAGTGAACCGACAAAATG
Found at i:14481880 original size:26 final size:26
Alignment explanation
Indices: 14481851--14481903 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14481841 CTGGTCCGAT
14481851 CTTAGACTAGAAATGAACT-CTGTATG
1 CTTAGACTAGAAATGAACTAC-GTATG
* *
14481877 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTAGAAATGAACTACGTATG
14481903 C
1 C
14481904 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.17, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGAAATGAACTACGTATG
Found at i:14483347 original size:338 final size:340
Alignment explanation
Indices: 14482683--14483362 Score: 934
Period size: 338 Copynumber: 2.0 Consensus size: 340
14482673 CTGGGAATGA
* * ** * * * *
14482683 ACTCCGTATGCCTAAGCCAACTGACGAAATGAGCGGGCGGGTGGGCGGGAGGGCACTACGTCAGC
1 ACTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGTGGACAGGAGAGCACTACGCCAGC
* * * *
14482748 GAGAGAGACAGGATGCGCAAGGCGTGGATCGATAGGGTTGTAGGTGGGTTTAGGCACATCTTCAT
66 CAGAGAGACAGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * * *
14482813 ATTTCTGCATGCCAACCGCCATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCTTTCA
131 ATCTCTACATGCCAACCGCCATTATTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
** * * * ** * *
14482878 CGTGTTGTTTAATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
196 CGTGAAGTTTAATGCCAAGACGACTCATTTTCTATTTTTCATAATTTTCAAAACTTTTTACAGTT
* * * * * *
14482943 TGAGATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTAGACATGTTCGTTGTA
261 AGAGATTTTTCAAAATATTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
14483008 TTTTTGTTGGCATGC
326 TTTTTGTTGGCATGC
*
14483023 ACTCCATATGCCTAAGCCAACCGAC-AAACAAGCGGGCGGGTGGACAGGCGAGCACTACGCCAGC
1 ACTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGTGGACAGGAGAGCACTACGCCAGC
* *
14483087 CAGAGAGACGGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCAT
66 CAGAGAGACAGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* **
14483152 ATCTCTACGTGCC-ATTGCCATTATTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
131 ATCTCTACATGCCAACCGCCATTATTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
14483216 TGTGAAGTTTCAA-GCCAAGACGACTCGTTTTCTATTTTTCATAATTTTCAAAACTTTTTACAGT
196 CGTGAAGTTT-AATGCCAAGACGACTCATTTTCTATTTTTCATAATTTTCAAAACTTTTTACAGT
* * * *
14483280 TAGGGATTTTTTAAAATATTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
260 TAGAGATTTTTCAAAATATTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGT
14483345 ATTTTTGTTGGCATGC
325 ATTTTTGTTGGCATGC
14483361 AC
1 AC
14483363 AAAAAAATTT
Statistics
Matches: 295, Mismatches: 44, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
338 169 0.57
339 103 0.35
340 23 0.08
ACGTcount: A:0.24, C:0.19, G:0.25, T:0.32
Consensus pattern (340 bp):
ACTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGTGGACAGGAGAGCACTACGCCAGC
CAGAGAGACAGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATCTCTACATGCCAACCGCCATTATTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
CGTGAAGTTTAATGCCAAGACGACTCATTTTCTATTTTTCATAATTTTCAAAACTTTTTACAGTT
AGAGATTTTTCAAAATATTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTA
TTTTTGTTGGCATGC
Found at i:14483757 original size:26 final size:26
Alignment explanation
Indices: 14483717--14483769 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14483707 CTGGTCTGAT
* *
14483717 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14483743 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
14483769 C
1 C
14483770 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:14484662 original size:26 final size:26
Alignment explanation
Indices: 14484611--14484663 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14484601 CCCGTTTGAT
* * *
14484611 CTTAGACTGGTAATCAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCATATG
*
14484637 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATCAACTCCATATG
14484663 C
1 C
14484664 CTAGGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCATATG
Found at i:14485519 original size:26 final size:26
Alignment explanation
Indices: 14485468--14485520 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14485458 CCCGTTTGAT
* *
14485468 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14485494 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14485520 C
1 C
14485521 CTAGGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14485600 original size:857 final size:854
Alignment explanation
Indices: 14483076--14487348 Score: 5061
Period size: 857 Copynumber: 4.9 Consensus size: 854
14483066 ACAGGCGAGC
* *
14483076 ACTACGCCAGCCAGAGAGACGGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
1 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * ** * *
14483141 GACATCTTCATATCTCTACGTGCCATTGCCATTATTATGGCTTGTAAATTCATACAATGGTCCCT
66 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * ** **
14483206 TAAGCCTTCATGTGAAGTTTCAA-GCCAAGACGACTCGTTTTCTATTTTTCATAATTTTCAAAAC
131 TAAGCCTTCACGTGAAGTTT-AATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
* * * *
14483270 TTTTTACAGTTAGGGATTTTTTAAAATATTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACG
195 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
14483335 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAAATCGAAGCGTACAAGATT
260 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
14483400 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
325 TTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
14483465 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-CTCAAGCTTTGATGAGGGATAGAGGGCCAA
389 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCCT-GAGGTTTGATGAGGGATAGGGGGCCAA
* * * * * * * *
14483529 TATAAGGGCCAAGTACCAGCACCCTTCACACATCCTATGCGCAGACCCCCTCCCCGGCCTCTCCG
453 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACACCC-CCCCGACC-CCCCC
* * * ** * *
14483594 ATTGTCGGAACCCCTATGCCACTAGTCAGGTTCT-C--C---G----G-CGATGGTGCCTCGGCG
514 ATCGTCAGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTG
* ** * * ** * * * *
14483648 AACAAAAATGTGGCACCAGCACATGCCCGGGCCTTGCATGTGCTGCCGCAACCTTCGG-CCTGGT
579 AAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCCGTT
* *
14483712 CTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGCAATGAACTCCGTATGCCTAAGTC
644 C-GATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
* * * *
14483777 AACCCACGAAA-GAAGCGTGCGGGCGCTCAGCCGGCCAGAGGAGTGGGATGCGCAAGTCGGGGAT
708 AACCCACGAAACG-AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGAAAGTCAGGGAT
* * * * * * * * * *
14483841 CGGCTGGGTCCCCCTCTGTGTGTTGTCGATCCTGCTACCGCAACCCTTGGTCTGGTCTGATCTTA
772 CGACAGGGTCCCCCTC---------T--A-CTTGCTATCG-AACTC-T-GTAT-GCCTAAGC-CA
* * *** ** * *
14483906 GACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGC
820 -AC--CG-ACGAA------ATG----AG-----TG--G-GTGGA-CGGGCGGATGAGA
* * *
14483964 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGCGTGGTAGTTGGGTTTAGG
1 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * * *
14484029 GACATCTTCATATTTCTGTGTGCCATTGCCATTGTTATGGCTTGTAAATTCAAACAATGGTCCTT
66 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *** *
14484094 TAAGCCTTCCCGTGAAGTTTCAA-GCCAAGACGACTTGCTTTCTATTTTTCACG-TTTTTTAAAC
131 TAAGCCTTCACGTGAAGTTT-AATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
* *
14484157 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTGGTAGACG
195 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
14484221 TGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAGAAACTCGAAGTGTACAAGATT
260 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
14484286 TTGTGACCATTTGAAAAAAGTGTCCACATTCCAGACACTTTAATGGCTACTGGCAGCAAACCCGT
325 TTGTGACCATTTGAAAAAAGTGTCC-CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
14484351 AAAATATCAAATGCTCTTTAAAGGGGAGTGAGTTCCTGAGGTTTGATGCGGGATAGGGGGCCAAT
389 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCCTGAGGTTTGATGAGGGATAGGGGGCCAAT
*
14484416 ATAAGGGCCAAGTACCAGCACCCATCGCAGATCATGTGCGCACACCCCCCCGACTCCCCCCATCG
454 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC-CCCCCCATCG
* *
14484481 TCAGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGGTGAAGA
518 TCAGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGA
* * *
14484546 AAAATATGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGGCACAACCCTCGGTCCCGTTTGAT
583 AAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCCGTTCGAT
* * *
14484611 CTTAGACTGGTAATCAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAGGTCAACCC
648 CTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
*
14484676 ATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGAAAGTCAGGGATCGACAG
713 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGAAAGTCAGGGATCGACAG
14484741 GGTCCCCCTCTACTTGCTATCGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGTGGGTGGAC
778 GGTCCCCCTCTACTTGCTATCGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGTGGGTGGAC
14484806 GGGCGGATGAGA
843 GGGCGGATGAGA
* * *
14484818 ACTACGCTGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGCTAGGGTGGTAGGTGGGTTTAGG
1 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
14484883 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTTATACAATGGTCCCT
66 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
*
14484948 TAAGCCTTCACGTTAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACT
131 TAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACT
* * **
14485013 TTTTACGGTCCGAGATTTTTTAAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
196 TTTTACGGTTCGGGATTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
14485078 TGATCCTTGTATTTTTTTTGGCATGCATAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATT
260 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
14485143 TTGTGACCATTTGAGAAAAGTGTCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACCGGT
325 TTGTGACCATTTGAAAAAAGTGTCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
14485208 AAAATCTCAAATGCTCTTTAAAGGGTTGTGAGTT-CTCGAGGTTTCATGAGGGATAGGGGGCCAA
389 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCCT-GAGGTTTGATGAGGGATAGGGGGCCAA
*
14485272 TATAAGGGCCAAGTACCAGCACCCATCGCAGATCATGTGCGCACACCCCCCCGACTCCCCCCATC
453 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGAC-CCCCCCATC
* *
14485337 GTCAGAACCCCAATGCCACCGGTCAGGTTCTCTGGCGATGCTCCGACGATGGTGCCCCGGTGAAG
517 GTCAGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAG
* * *
14485402 AAAAATATGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGGCACAACCCTCGGTCCCGTTTGA
582 AAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCCGTTCGA
*
14485467 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAGGTCAACC
647 TCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACC
*
14485532 CATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGAAAGTCAGGGATCGACA
712 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGAAAGTCAGGGATCGACA
14485597 GGGTCCCCCTCTACTTGCTATCGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGTGGGTGGA
777 GGGTCCCCCTCTACTTGCTATCGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGTGGGTGGA
14485662 CGGGCGGATGAGA
842 CGGGCGGATGAGA
* * *
14485675 ACTACGCTGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGCTAGGGTGGTAGGTGGGTTTAGG
1 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
14485740 CACATCTTCATATTTCTGTGTGCCAATGTCATTTTTATGGCTTGTAAATTCATACATTGGTTCCC
66 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-TCCC
* * ** ** *
14485805 -TAAGCCTCCACGTGAAGTTTCATGGCAAGGTGACTCATTTTCTATTTTTCATAACTTTTGAAAC
130 TTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAAC
* * * * * * *
14485869 TTTTTGCGGTTTGGGATTTTTCAAAATTTTTTCAGAAGGAGTTTTGGTCCCACACTTCGTAGATG
195 TTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
14485934 TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGCGTACAAGATT
260 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* *
14485999 TTGTGACCATTT-AAAAAAGTGTTTCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGT
325 TTGTGACCATTTGAAAAAAGTG-TCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * *
14486063 AAAATCTCAAATGCTCTTT-AAGGGGTGTGAGCTCCTGAGGATTGATGAAGGATAGGTGGCCAAT
389 AAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCCTGAGGTTTGATGAGGGATAGGGGGCCAAT
**
14486127 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGACCCCCTGGATCG
454 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCC-CCATCG
* * * **
14486191 TCGGAACCCCAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGACCCGACGAAGA
518 TCAGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGA
* * * *
14486256 AAAATGCGGCACCAGCACATGCCTGAGCCCGGCATGTGCTGCCACAACCCTCGGTCCAGTTCAAT
583 AAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCCGTTCGAT
* * *
14486321 CTTAGATTGGGAATGAACTTCGCATGCTTAGACTGGGAATAAACTCCATATGCCTAAGTCAACCC
648 CTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
* * * * * *
14486386 ACGAAATGAGCGTGCAGGCGGTCGGCCGGCC-GAGGGGCGGGATGCGAAAGTTAGGGATCGACCG
713 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGAAAGTCAGGGATCGACAG
14486450 GGTCACCCTCTACGTGCTACCAATCTTGCTACCGTAACCTTCAGACCGGTCTGATCCTAGACTGG
778 GGT--CCC-C--C-T-CT----A-C-T--T---G----C-T---A----TC-G-----A-AC---
* * * *
14486515 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGACGGGCGGATGCGC
803 ---T---CT--GTATGCCTAAGCCAACCGACGAAATGAGTGGGTGGACGGGCGGATGAGA
* * **
14486575 ACTACGCCGACCAGAGAGACGGGATACGCAAGCCGTGGATCGATTTGGTGGTAGGTGGGTTTAGG
1 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *** * *
14486640 CACATCTTTATATTTCTGCACGCCAATGCCATTTTTCTGGCTTGTAAATTGATACAATGGTCCCT
66 CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * *
14486705 TAAGCCTTCACATGAAATTTCATGGCAAGACGACTCATTTTCTACTTTTCATGATTTTTGAAACT
131 TAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACT
* *
14486770 TTTTATGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGT
196 TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * *
14486835 GATCCTTGTATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTC-AAGGTGCAGAAGATT
261 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA-GTGTACAAGATT
* * *
14486899 TTTTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAACAAACCTGT
325 TTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
14486964 AAAATCTCAAATGCTCTTT-AAGAAGGTGTGAGTT-CTCGAGGTTTGATGAGGGATAGGGGGCCA
389 AAAATCTCAAATGCTCTTTAAAG-GGGTGTGAGTTCCT-GAGGTTTGATGAGGGATAGGGGGCCA
* * * * * *
14487027 ATATAAGGACCAAGTACCAGCACCCATCACACATCATGAGCGCACACCCCCCAG-CCCCTCGATC
452 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCATC
* * **
14487091 G-CTGGAACCCCAAAGCTGCCGGTCAGGTTCTCCGACGATGCT-C--C-A----G---C---GAA
517 GTC-AGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAA
* ** * * *
14487141 GAAAAATGCGGCACCAGCACATGCCCAAACCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCG
581 GAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCCGTTCG
* * * * * * *
14487206 ATCGTAGACTGGGAAAGAAATCCGTATGCTTAGGCCGGGAATGAACTCCGTATGCCTAAGTCAAC
646 ATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAC
* * * * * * *
14487271 CCACGAAAGGAGCGTGTGGGCGCTCAGCCGGCCATAGGGGCAGGATGCGCAAGTCGGGGATCAGT
711 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGAAAGTCAGGGATC-GA
14487336 C-GGGTCCCCCTCT
775 CAGGGTCCCCCTCT
14487349 GCGTGCTACC
Statistics
Matches: 3015, Mismatches: 286, Indels: 175
0.87 0.08 0.05
Matches are distributed among these distances:
852 38 0.01
853 218 0.07
854 253 0.08
855 96 0.03
856 141 0.05
857 790 0.26
858 7 0.00
859 2 0.00
863 3 0.00
864 1 0.00
865 1 0.00
867 4 0.00
870 1 0.00
873 4 0.00
874 2 0.00
875 1 0.00
876 2 0.00
877 1 0.00
878 6 0.00
879 3 0.00
880 1 0.00
881 6 0.00
882 11 0.00
883 41 0.01
884 6 0.00
885 4 0.00
886 232 0.08
887 195 0.06
888 194 0.06
889 5 0.00
890 1 0.00
893 2 0.00
894 192 0.06
895 6 0.00
897 1 0.00
898 3 0.00
899 6 0.00
900 340 0.11
901 110 0.04
902 79 0.03
903 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (854 bp):
ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACT
TTTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCCTGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCCATCGTCA
GAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAA
ATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCCGTTCGATCTT
AGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGAAAGTCAGGGATCGACAGGGT
CCCCCTCTACTTGCTATCGAACTCTGTATGCCTAAGCCAACCGACGAAATGAGTGGGTGGACGGG
CGGATGAGA
Found at i:14486373 original size:26 final size:26
Alignment explanation
Indices: 14486321--14486373 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
14486311 CCAGTTCAAT
* * * *
14486321 CTTAGATTGGGAATGAACTTCGCATG
1 CTTAGACTGGGAATAAACTCCACATG
*
14486347 CTTAGACTGGGAATAAACTCCATATG
1 CTTAGACTGGGAATAAACTCCACATG
14486373 C
1 C
14486374 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCACATG
Found at i:14487633 original size:885 final size:889
Alignment explanation
Indices: 14485619--14487977 Score: 3240
Period size: 885 Copynumber: 2.6 Consensus size: 889
14485609 ACTTGCTATC
* * *
14485619 GAACTCTGTATGCCTAAGCCAACCGACGAAATGAGTGGGTGGACGGGCGGATGAGAACTACGCTG
1 GAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGCGGACGGGCGGA-GAGCACTACGC-G
* * *
14485684 GCCAGAGAGACGGGATGCGTAAGCCGTGGATCGCTAGGGTGGTAGGTGGGTTTAGGCACATCTTC
64 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * *
14485749 ATATTTCTGTGTGCCAATGTCATTTTTATGGCTTGTAAATTCATACATTGGTTCCC-TAAGCCTC
129 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-TCCCTTAAGCCTT
** * * *
14485813 CACGTGAAGTTTCATGGCAAGGTGACTCATTTTCTATTTTTCATAACTTTTGAAACTTTTTGCGG
193 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * * * *
14485878 TTTGGGATTTTTCAAAATTTTTTCAGAAGGAGTTTTGGTCCCACACTTCGTAGATGTGATCCTTG
258 TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTG
*
14485943 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGCGTACAAGATTTTGTGACCA
323 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAGTGTACAAGATTTTGTGACCA
** *
14486008 TTT-AAAAAAGTGTTTCCATTTCAGACACTTTAATGGCTACTGGCAGGAAACCTGTAAAATCTCA
387 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
14486072 AATGCTCTTTAAGGGGTGTGAGCTC-CTGAGGATTGATGAAGGATAGGTGGCCAATATAAGGGCC
452 AATGCTCTTTAAGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
*
14486136 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCTGGATCGTCGGAACCCC
516 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCTCGATCGTCGGAACCCC
* *
14486201 AATGCCATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGACCCGACGAAGAAAAATGCGGC
581 AAAGCCACCGGTCAGGTTCTCCGACGATGCTCC-AC------GA--CGACGAAGAAAAATGCGGC
** * * * * *
14486266 ACCAGCACATGCCTGAGCCCGGCATGTGCTGCCACAACCCTCGGTCCAGTTCAATCTTAGATTGG
637 ACCAGCACATGCCCAAACCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCAATCGTAGACTGG
* * * * *
14486331 GAATGAACTTCGCATGCTTAGACTGGGAATAAACTCCATATGCCTAAGTCAACCCACGAAATGAG
702 GAAAGAAATCCGCATGCTTAGACCGGGAATAAACTCCATATGCCTAAGTCAACCCACGAAAGGAG
* * * *
14486396 CGTGCAGGCGGTCGGCCGGCCGAGGGGCGGGATGCGAAAGTTAGGGATCGACCGGGTCACCCTCT
767 CGTGCAGGCGCTCAGCCGGCCGAGGGGCAGGATGCGAAAGTCAGGGATCGACCGGGTCACCCTCT
* **
14486461 ACGTGCTACCAATCTTGCTACCGTAACCTTCAGACCGGTCTGATCCTAGACTGGGAAT
832 ACGTGCTACCAATCCTGCTACCGTAACCTTCAGACCGGTCCAATCCTAGACTGGGAAT
* *
14486519 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGACGGGCGGATGCGCACTACGCCG
1 GAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGCGGACGGGCGGA-GAGCACTACG-CG
* * ** *
14486584 ACCAGAGAGACGGGATACGCAAGCCGTGGATCGATTTGGTGGTAGGTGGGTTTAGGCACATCTTT
64 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTC
** * *
14486649 ATATTTCTGCACGCCAATGCCATTTTTCTGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTC
129 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
14486714 ACATGAAATTTCATGGCAAGACGACTCATTTTCTACTTTTCATGATTTTTGAAACTTTTTATGGT
194 ACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
14486779 TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGT
259 TCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGT
* * * * *
14486844 ATTTTTGTTGGCATGGACAAAAAAATTCAGCTAAAAACTCAAGGTGCAGAAGATTTTTTGACCAT
324 ATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA-GTGTACAAGATTTTGTGACCAT
* *
14486909 TTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAA
388 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
14486974 ATGCTCTTTAAGAAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCA
453 ATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
14487039 AGTACCAGCACCCATCACACATCATGAGCGCACACCCCCC-AGCCCCTCGATCG-CTGGAACCCC
517 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCTCGATCGTC-GGAACCCC
**
14487102 AAAGCTGCCGGTCAGGTTCTCCGACGATGCT-C-C-A-G-CGAAGAAAAATGCGGCACCAGCACA
581 AAAGCCACCGGTCAGGTTCTCCGACGATGCTCCACGACGACGAAGAAAAATGCGGCACCAGCACA
* *
14487162 TGCCCAAACCCAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCGTAGACTGGGAAAGAAAT
646 TGCCCAAACCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCAATCGTAGACTGGGAAAGAAAT
* * * * **
14487227 CCGTATGCTTAGGCCGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAGGAGCGTGTGGGC
711 CCGCATGCTTAGACCGGGAATAAACTCCATATGCCTAAGTCAACCCACGAAAGGAGCGTGCAGGC
* * * * * *
14487292 GCTCAGCCGGCCATAGGGGCAGGATGCGCAAGTCGGGGATC-AGTCGGGTCCCCCTCTGCGTGCT
776 GCTCAGCCGGCC-GAGGGGCAGGATGCGAAAGTCAGGGATCGA-CCGGGTCACCCTCTACGTGCT
* * * * * * *
14487356 ACCGATCCTGCTGCTGTGAACC-TCGGTCCGGTCCAATCTTAGATTGGGAAT
839 ACCAATCCTGCTACCGT-AACCTTCAGACCGGTCCAATCCTAGACTGGGAAT
14487407 GAACTCCGTATGCCTAAGCCAACCGACGAAATGAGATGGGCAGG-CGGGC-G-G-GCACTACGTC
1 GAACTCCGTATGCCTAAGCCAACCGACGAAATGAG-TGGGC-GGACGGGCGGAGAGCACTACG-C
* * *
14487468 GGCCAGAGAGACGGGATGTGCAAGTCGTGGATCGATAAAGTGGTAGGTGGGTTTAGGCACATCTT
63 GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTT
* *
14487533 CATATTTCTACGTGCCAATGCCATTTTTATGACTTGTAAATTCATACAATGGTCCCTTAAGCCTT
128 CATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * *
14487598 CACGTGAAGTTTCATGGCAAGACGACTCTTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGG
193 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * ** * *
14487663 TCCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTTCCCCAAGCTTGGTAGACGTGATCCTTG
258 TTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTG
* *
14487728 TATTTTTTTTTGCACGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
323 TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-AAGTGTACAAGATTTTGTGACCA
14487793 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
387 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
14487858 TATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCC
452 AATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* *
14487923 AAGTACCCGCACCCATCGCACATCATGTGCGCACACACCCGTCGACCCCC-CGATC
516 AAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCC-CCGACCCCCTCGATC
14487978 ACCGAAACCC
Statistics
Matches: 1294, Mismatches: 148, Indels: 47
0.87 0.10 0.03
Matches are distributed among these distances:
885 450 0.35
886 7 0.01
887 152 0.12
888 118 0.09
889 14 0.01
890 2 0.00
891 1 0.00
898 1 0.00
899 6 0.00
900 344 0.27
901 116 0.09
902 82 0.06
903 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.26
Consensus pattern (889 bp):
GAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGCGGACGGGCGGAGAGCACTACGCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
GGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTAT
TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAGTGTACAAGATTTTGTGACCATTTG
AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
CTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCTCGATCGTCGGAACCCCAAAGC
CACCGGTCAGGTTCTCCGACGATGCTCCACGACGACGAAGAAAAATGCGGCACCAGCACATGCCC
AAACCCAGCATGTGCTGCCACAACCCTCGGTCCAGTCCAATCGTAGACTGGGAAAGAAATCCGCA
TGCTTAGACCGGGAATAAACTCCATATGCCTAAGTCAACCCACGAAAGGAGCGTGCAGGCGCTCA
GCCGGCCGAGGGGCAGGATGCGAAAGTCAGGGATCGACCGGGTCACCCTCTACGTGCTACCAATC
CTGCTACCGTAACCTTCAGACCGGTCCAATCCTAGACTGGGAAT
Found at i:14488804 original size:26 final size:26
Alignment explanation
Indices: 14488762--14488814 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14488752 CCGGTCTGAT
* *
14488762 CTTAGACTGGGATTGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14488788 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14488814 C
1 C
14488815 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14490887 original size:26 final size:26
Alignment explanation
Indices: 14490851--14490903 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14490841 CCAGTTCAAT
*
14490851 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14490877 CTTAGACTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14490903 C
1 C
14490904 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14492607 original size:26 final size:26
Alignment explanation
Indices: 14492578--14492629 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14492568 TCCAGTCCGA
14492578 TCTTAAACTAGGAATGAACTCCGTAT
1 TCTTAAACTAGGAATGAACTCCGTAT
* *
14492604 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAAACTAGGAATGAACTCCGTAT
14492630 GCCCAAGTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (26 bp):
TCTTAAACTAGGAATGAACTCCGTAT
Found at i:14493544 original size:26 final size:26
Alignment explanation
Indices: 14493482--14493546 Score: 112
Period size: 26 Copynumber: 2.5 Consensus size: 26
14493472 AGAATTGAAT
*
14493482 GAACTCTGTAGGCTTAGACTGGGAAA
1 GAACTCTGTATGCTTAGACTGGGAAA
*
14493508 GAACTCCGTATGCTTAGACTGGGAAA
1 GAACTCTGTATGCTTAGACTGGGAAA
14493534 GAACTCTGTATGC
1 GAACTCTGTATGC
14493547 CTAAGTCAAC
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (26 bp):
GAACTCTGTATGCTTAGACTGGGAAA
Found at i:14495831 original size:26 final size:26
Alignment explanation
Indices: 14495802--14495854 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14495792 CTGGTCTGAT
** *
14495802 CTTAAACTGGGAATGAACTCTGTATG
1 CTTAAACAAGGAATGAACTCCGTATG
*
14495828 CTTAGACAAGGAATGAACTCCGTATG
1 CTTAAACAAGGAATGAACTCCGTATG
14495854 C
1 C
14495855 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAAACAAGGAATGAACTCCGTATG
Found at i:14496668 original size:895 final size:894
Alignment explanation
Indices: 14494156--14497606 Score: 4540
Period size: 895 Copynumber: 3.9 Consensus size: 894
14494146 GCTCTTTAAG
* * * * * * * *
14494156 CGGGGATCAGTTGAGTCCCCCTCT-ACGTGCTGCCAATCTTGCTGCCGCAACCCTCGGTTCGGTC
1 CGGGGATCGGCTGGGTCCCCCTCTGA-GTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTC
* * * * * *
14494220 TGATCTTAGACTGGGAATGAATTCCGTATGCCTAAGCCAACCGA-TGATATGAACGAGCGGGCGG
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGGA-ACGAGCGGGCGGGCGG
* * * * *
14494284 GCACTACGTCGGCCAGAGAGAAGGGATGCGCAAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTA
129 GCACCACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTA
* ** * *
14494349 GGTACATCTTCATATTTCTATGTGCCAATGAAATTTTTATGGCTTGTAAATTGATACAATGGTCC
194 GGCACATCTTCATATTTCTACATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
14494414 CTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
259 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAA
* * *
14494479 CTTTTTACGGTTTGGGATTTTTT-AAATTTTTTCGGAAGGAGTTTTCGCCCCAAACTTGGTAGAC
324 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
14494543 GTGATCCTTGTATTTTTGTTGGCATGCACAAAACAACTCAGCTAAAAAGTCGAAGTGTACAAGAT
389 GTGATCCTTGTATTTTTGTTGGCATGCACAAAACAACTCAGCTAAAAACTCGAAGTGTACAAGAT
* * *
14494608 TTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGGCACTTTAATGGCTACGGGCAGCAAACCTG
454 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
14494673 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAA
519 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAA
* * *
14494738 TATAAGGGCCAAGCACCAGCACCCATCTCACATCATGTGCGCACACCCCCCGGGCCCCTCGATCG
584 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC-CGATCG
* * * * *
14494803 TCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCAGCGATGGTGCCCCGATGAAGA
648 CCGAAACCCCAATGCCGCCAGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * *
14494868 AAAATGCGGCACCAGCACATGCTCGAGCCCAACATGTGCTGCCGTAA-CC-C--T-T-G---G--
713 AAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGAT
14494922 --T---CT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
778 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * *
14494972 ATGAAACAAGTGTCCGAGCGCTCAGCCGGCCAAAGGGGTGGGATGTGCAAGT
843 ATGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * * ** *
14495024 CAGGTATCGACCGAGTCCCACTCTGTGTGCTGTCGATCCTACTGTTGCAACCCTCGGTCTGGTCC
1 CGGGGATCGGCTGGGTCCCCCTCTGAGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCC
* * * * *
14495089 GATCTTAGACTGAGAATGAACTTCGTATGCCTAAGCCAACCGACGTAACGAGCCGGCGGGTGGGC
66 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGAGCGGGCGGGCGGGC
* * * * * * * *
14495154 ACTATGCCGGCCAGACAGACGAGATGCGTAAGCTGTGGATCGATA-TGGTGATAGGTGGGTTTAG
131 ACCACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGT-GTGGTAGGTGGGTTTAG
* *
14495218 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
195 GCACATCTTCATATTTCTACATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* **
14495283 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCATGATTTTTGAAAC
260 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
* * *
14495348 TTTTTGCTGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAGG
325 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * * * *
14495413 TGATCCTTGTATTTTTTTTGGCGTGCACAAAA-ATATTCAGCTAAAAACTTGAACTGTACAAGAT
390 TGATCCTTGTATTTTTGTTGGCATGCACAAAACA-ACTCAGCTAAAAACTCGAAGTGTACAAGAT
**
14495477 TTTGTGACCATTTGAAAAAAGTGTGTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
454 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
14495542 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCCAA
519 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAA
* * * * *
14495607 TATCAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGTACA-GCCCCCGGCCCCCCCGAAC
584 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG--CCCCCGATC
* ** * ** *
14495671 GTCCG-AACCCCAATGCCGCCAGTCAGGTTCTCCGGCAATGCTTCGATGATGGTGCCCCGACCAA
647 G-CCGAAACCCCAATGCCGCCAGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGACGAA
* * * ** ** *
14495735 GAAAAATGCGATACCAGTACCTGCGTGAGCGTAGCATGTGCTGCCGCAACCCTCGGTCTGGTCTG
711 GAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
* * **
14495800 ATCTTAAACTGGGAATGAACTCTGTATGCTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAAC
776 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
14495865 CCATGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGC
841 CCATGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * *
14495919 CGGGGATCGGCTGGGTCCCCCTCTGAATGCT-ACTGATCCTGCTGCCACAACCCTCAGTCCAGTC
1 CGGGGATCGGCTGGGTCCCCCTCTGAGTGCTGTC-GATCCTACTGCCGCAACCCTCGGTCCGGTC
* * *
14495983 TGATCTCAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGGAACGAGCGGGCGGGCGGG
65 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGAGCGGGCGGGCGGG
*
14496048 CACCACGTCGGCCTGAGAGACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAG
130 CACCACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAG
* ** *
14496113 GCACATGTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
195 GCACATCTTCATATTTCTACATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCC
*
14496178 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
260 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAAC
*
14496243 TTTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
325 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
*
14496308 TGATCCTTGTATTTTTGTTGGCATGCACAAAACAACTCAGCTAAAAAGTCGAAGTGTACAAGATT
390 TGATCCTTGTATTTTTGTTGGCATGCACAAAACAACTCAGCTAAAAACTCGAAGTGTACAAGATT
14496373 TTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGTC-GCAAACCTG
455 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-CAGCAAACCTG
* * * *
14496436 AAAAATCTCGAATGCTCCTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAA
519 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAA
* * *
14496501 TATAAGGGCCAAGTACTAGCACCCATCGTACATCATGTGCGCATAGCCCCCCTCGGCCCCCGATC
584 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-CGGCCCCCGATC
* * * **
14496566 GCCGAAACCCTAATGCCGTCAGTCAGGTTCTCTAGTGATGCTCCGGCGATGGTGCCCCGGGGAAG
647 GCCGAAACCCCAATGCCGCCAGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGACGAAG
* * * * * *
14496631 AAAAATGTGGCACTAGCACATGCCCCAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGATCCGA
712 AAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGA
14496696 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
777 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * *
14496761 CATGAAACGAGCGTACGTGTGCTCAACCGACCAGAGGGGCGGGATGCGTAAGC
842 CATGAAACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * *
14496814 CGAGGATCTG-TCGGGTCCCCCTCT-ACGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGT
1 CGGGGATCGGCT-GGGTCCCCCTCTGA-GTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGT
* * * ** ** *
14496877 CCAATCTTAGACTAGGAATGAACTCCGTATGCCTAACCCAATGGACAAAATGAGCGGGCGGGCGG
64 CCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGAGCGGGCGGGCGG
* * *
14496942 GCACCACATCGGCCAGTGAGACGGGACGCGCAAGCCGTGGATCGATAG-GATGGTAGGTGGGTTT
129 GCACCACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGTG-TGGTAGGTGGGTTT
* *
14497006 AGGCACATCTTCATATTTCTGCATGCCAATGACATTTCTATGGCTTGTAAATTCATACAATGGTC
193 AGGCACATCTTCATATTTCTACATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
14497071 CCTTAACCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTTCATGATTTTTAAA
258 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAA
* * * * *
14497136 ACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTTGAAAGCAGTTTTGGCCCCAAA-TTGGTAGA
323 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
14497200 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAATTGTACAAGA
388 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAACTCAGCTAAAAACTCGAAGTGTACAAGA
* *
14497265 TTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCT
453 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
14497330 GTAAAATCTCATATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
518 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCA
* *
14497395 ATATAACGGCCAAGTACCATCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
583 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG--CCCCCGAT
* * * *
14497459 CGCCGGAACCCCAATGCCG-C---C-GG---T-GAG-G-TTCTCCGGCGATGGTGCCCCGGCGAA
646 CGCCGAAACCCCAATGCCGCCAGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGACGAA
** ** * *
14497513 GAAAAATGCGACAGTATTACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCTGGTCCA
711 GAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCG
*
14497578 ATCTTAGGCTGGGAATGAACTCCGTATGC
776 ATCTTAGACTGGGAATGAACTCCGTATGC
14497607 CCAAGCCAAC
Statistics
Matches: 2248, Mismatches: 285, Indels: 85
0.86 0.11 0.03
Matches are distributed among these distances:
868 298 0.13
869 355 0.16
870 8 0.00
871 1 0.00
873 1 0.00
874 1 0.00
875 1 0.00
878 1 0.00
882 1 0.00
883 107 0.05
884 1 0.00
885 4 0.00
886 1 0.00
887 1 0.00
889 2 0.00
890 2 0.00
892 3 0.00
893 9 0.00
894 263 0.12
895 1178 0.52
896 7 0.00
897 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
CGGGGATCGGCTGGGTCCCCCTCTGAGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCCGGTCC
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGAGCGGGCGGGCGGGC
ACCACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGTGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTACATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACT
TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
GATCCTTGTATTTTTGTTGGCATGCACAAAACAACTCAGCTAAAAACTCGAAGTGTACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCGATCGCCG
AAACCCCAATGCCGCCAGTCAGGTTCTCCAGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAA
ATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
AAACGAGCGTACGAGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
Found at i:14496726 original size:26 final size:26
Alignment explanation
Indices: 14496697--14496749 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14496687 CTGATCCGAT
14496697 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14496723 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14496749 C
1 C
14496750 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14499980 original size:26 final size:26
Alignment explanation
Indices: 14499951--14500000 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14499941 GTCTGGTCTG
14499951 TATGCTTAGACTGGGAATGAACTCTA
1 TATGCTTAGACTGGGAATGAACTCTA
14499977 TATGCTTAGACTGGGAATGAACTC
1 TATGCTTAGACTGGGAATGAACTC
14500001 CGTATGCCTA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.30
Consensus pattern (26 bp):
TATGCTTAGACTGGGAATGAACTCTA
Found at i:14500006 original size:26 final size:26
Alignment explanation
Indices: 14499950--14500007 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
14499940 GGTCTGGTCT
*
14499950 GTATGCTTAGACTGGGAATGAACTCT
1 GTATGCTTAGACTGGGAATGAACTCC
*
14499976 ATATGCTTAGACTGGGAATGAACTCC
1 GTATGCTTAGACTGGGAATGAACTCC
14500002 GTATGC
1 GTATGC
14500008 CTATGTCAAC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.29
Consensus pattern (26 bp):
GTATGCTTAGACTGGGAATGAACTCC
Found at i:14500917 original size:26 final size:26
Alignment explanation
Indices: 14500865--14500917 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
14500855 CCGATCCGAT
* * *
14500865 CTTAGACTGGGAATGAACACTGAATG
1 CTTAAACTGGAAATGAACACCGAATG
* *
14500891 CTTAAACTGGAAATGAACTCCGTATG
1 CTTAAACTGGAAATGAACACCGAATG
14500917 C
1 C
14500918 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGAAATGAACACCGAATG
Found at i:14501080 original size:26 final size:26
Alignment explanation
Indices: 14501051--14501103 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14501041 CCGGTCCAAC
14501051 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14501077 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14501103 C
1 C
14501104 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14501184 original size:186 final size:185
Alignment explanation
Indices: 14500845--14501256 Score: 448
Period size: 186 Copynumber: 2.2 Consensus size: 185
14500835 GTGCTGCCGC
* * * * * *
14500845 AACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACACTGAATGCTTAAACTGGAAATGAACT
1 AACCCTCGGTCCGGTCCAACCTTAGACTGGGAATGAACTCTCAATGCTTAAACTGGAAATGAACT
* * * * * *
14500910 CCGTATGCCTAAGTCAACTCATGAAACGAATGTGCCGGCACTCAGTCGACGAGAGGGACGGGATG
66 CCGTATGCCTAAGTCAACCCACGAAACGAACGTGCCGGCACTCAGCCGACGAGAGGGACAGGATA
* * * * ** *
14500975 CGTAAGGCGGGGATCGGTCGGGTCCCCCCTCTGTGTGCTATCGATCTTACTACCGT
131 CGAAAGCCAGGGATCGATCGGGT-CCCCCTCTACGTGCTATCGATCTTACTACCGG
* * *
14501031 AACCCTTGGTCCGGTCCAACCTTAGACTGGGAATGAACTC-CATATGCTTAGACTGGGAATGAAC
1 AACCCTCGGTCCGGTCCAACCTTAGACTGGGAATGAACTCTCA-ATGCTTAAACTGGAAATGAAC
* * * * * * * * *
14501095 TCCGTATGCCTATGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCTAGAGGGGCAGGTT
65 TCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCCGGCACTCAGCCGACGAGAGGGACAGGAT
* * * * *
14501160 ACGAAAGCCAGGGATCGATCGGGTCTCGCTCTACGTGCTGTCGATCTTGCTGCCGG
130 ACGAAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGCTATCGATCTTACTACCGG
* * *
14501216 AACCCTCGGTTCGGTCCGATCTTAGACTGGGAATGAACTCT
1 AACCCTCGGTCCGGTCCAACCTTAGACTGGGAATGAACTCT
14501257 GTATGCCTAA
Statistics
Matches: 184, Mismatches: 40, Indels: 4
0.81 0.18 0.02
Matches are distributed among these distances:
185 61 0.33
186 123 0.67
ACGTcount: A:0.23, C:0.26, G:0.28, T:0.22
Consensus pattern (185 bp):
AACCCTCGGTCCGGTCCAACCTTAGACTGGGAATGAACTCTCAATGCTTAAACTGGAAATGAACT
CCGTATGCCTAAGTCAACCCACGAAACGAACGTGCCGGCACTCAGCCGACGAGAGGGACAGGATA
CGAAAGCCAGGGATCGATCGGGTCCCCCTCTACGTGCTATCGATCTTACTACCGG
Found at i:14503577 original size:26 final size:26
Alignment explanation
Indices: 14503538--14503590 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14503528 CTGATTTGAT
*
14503538 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
14503564 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
14503590 C
1 C
14503591 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:14503752 original size:26 final size:26
Alignment explanation
Indices: 14503723--14503775 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14503713 CTGGTCCGAT
14503723 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14503749 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14503775 C
1 C
14503776 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14503868 original size:185 final size:185
Alignment explanation
Indices: 14503535--14503934 Score: 539
Period size: 185 Copynumber: 2.2 Consensus size: 185
14503525 GATCTGATTT
14503535 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * *
14503600 CCCATGAAACAAGCGTACGGGCGCTCAGCCGGCTAGAGGGGTGGAATGCGCAAGTCGAGGATCGA
66 CCCACGAAACAAGCATACAGGCGCTCAGCCGGCCAGAGAGGCGGAATGCGCAAGCCGAGGATCGA
** * *** ** * * *
14503665 CGGGGTCCCTCACTGCGTGCTGTCGATCCTGCTGTCGTAATCCTTGGTCTGGTCC
131 CCAGGTCCCCCACTGCGTGCCACCGATCCTGCTACCGTAACCCTCGGTCCGGTCC
* * *
14503720 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTTAA
1 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAA
** * * * *
14503785 CCCACGAAATTAGCATGCAGGCGCTCAGCCGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGG
66 CCCACGAAACAAGCATACAGGCGCTCAGCCGGCCAGAGAGGCGGAATGCGCAAGCCGAGGATCGA
* *
14503850 CCAGGTCCCCCTCTGCGTGCCACCGATCCTGCTACCGTAACCCTCGGTCCGGTCT
131 CCAGGTCCCCCACTGCGTGCCACCGATCCTGCTACCGTAACCCTCGGTCCGGTCC
14503905 GATCTTAGACTGGGAATGAACTCCGTATGC
1 GATCTTAGACTGGGAATGAACTCCGTATGC
14503935 CTAAGCCAAC
Statistics
Matches: 186, Mismatches: 29, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
185 186 1.00
ACGTcount: A:0.22, C:0.27, G:0.29, T:0.22
Consensus pattern (185 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAA
CCCACGAAACAAGCATACAGGCGCTCAGCCGGCCAGAGAGGCGGAATGCGCAAGCCGAGGATCGA
CCAGGTCCCCCACTGCGTGCCACCGATCCTGCTACCGTAACCCTCGGTCCGGTCC
Found at i:14505496 original size:26 final size:26
Alignment explanation
Indices: 14505467--14505519 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14505457 CCGGTCCGAT
14505467 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14505493 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14505519 C
1 C
14505520 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14506117 original size:881 final size:867
Alignment explanation
Indices: 14503709--14506283 Score: 3410
Period size: 864 Copynumber: 2.9 Consensus size: 867
14503699 TCGTAATCCT
*
14503709 TGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCTGTA
1 TGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC-GTA
* ** * * * *
14503773 TGCCTAAGTTAACCCACGAAATTAGCATGCAGGCGCTCAGCCGGCCAGAGAGGCGGGATGCGCAA
65 TGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAA
* ** * *
14503838 GCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCCACCGATCCTGCTACCGTAACCCTCGGTCCGGT
130 GCC-GGGATCGACCAGGTCCCCCTCTGCGTGCTTCCGATCCTGCTACCGCAACCCTCAGTCCGGT
* * * *
14503903 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGAGCGGGCGG
194 CTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCG-GCGTGCGG
* * * *
14503968 TCAGGC-GAGCACTACGTCGACCA-AGGAGATGGGATGCGCCAGCCGTGGATCGATAGGGTGGTA
258 -CGGGCAG-GCA-TACGTCGGCCAGA-GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
14504031 GGTGGGTTCAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
319 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
14504096 ACAATGGTCCCTTAAGCCGTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
384 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACG
* * * *
14504161 ATTTTGGAAACTTTTTACGGTTCGAGATTTTTTAAAATATTTTCGGAACGAGTTTT-ACCCCTAA
449 ATTTTAGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGAGTTTTGGCCCC-AA
* *
14504225 ACTTTGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCCAGCTAAAAACTCGAA
512 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* *
14504290 GTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCAATTTTAGACACTTTAATGGCTACTGG
577 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGG
14504355 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCTAGTTCTCAAGGTTTGATGAGGGA
642 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCTAGTTCTCAAGGTTTGATGAGGGA
14504420 TAGGGGCCAAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
707 TAGGGGCCAAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * *
14504485 CCCCTCGATC-ACCAGAACCCCAATGTCGTCGGTCAGGTTCTCCGGTGATGCT-CTGATGATGGC
772 CCCC-CGATCGTCGA-AACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCTGATGATGGC
14504548 GCCCCGACGAAGAAAAATACGACACCAGGACATGCC
835 GCCCCGACGAAGAAAAATACGACACCA-GACA--CC
* * **** * **** **
14504584 TGAG-CACAGCATGTGCTA-CTGTA-ACCCTCAGTTCGGTCCG-AT-CTTAGACTGGGAAACAAC
1 TG-GTC-C-G---GTCCGATCT-TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
14504644 TCCATATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGAT
59 TTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGAT
* * *
14504709 GCGCAAGTCGAGGATCGACCGGGTCCCCCTCTGCGTGCTAT-CGATCCTACTACCGCAACCCTCA
124 GCGCAAGCCG-GGATCGACCAGGTCCCCCTCTGCGTGCT-TCCGATCCTGCTACCGCAACCCTCA
* * * *
14504773 ATCTGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG--A-AA-C-GA
187 GTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGC
* *
14504833 GTG-GGCGGGCA-G--TACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
252 GTGCGGCGGGCAGGCATACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
14504894 TAGGTGGGTTTAGGCAAATCTTCATATTTCTATGTGCTAATGCCATTTTTATGGCTTGTAAATTC
317 TAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
14504959 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACCCGTTTTCTATTTTTCA
382 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCA
* * *
14505024 CGA-TTTAGAAAATTTTCACGGTTCGAGATTTTTTTAAATTTTTTCGGAAAGAGTTTTGGCCCCA
447 CGATTTTAGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAAAGAGTTTTGGCCCCA
* * * *
14505088 AACTTGGTAAACGTGATCCTTTTATTTTTGTTGGCGTGCACAAAAAAATTTAGCTAAAAACTCGA
511 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
14505153 AGTGTACAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTG
576 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG
14505218 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCTAGTTCTCAAGGTTTGATGAGGG
641 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCTAGTTCTCAAGGTTTGATGAGGG
14505283 ATAGGGGCCAAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
706 ATAGGGGCCAAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
** *
14505348 CCCCCCGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGCCATGCTCC
771 CCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCT----CC-TGAT--
* * ** *
14505413 GGCGATGGTGCCCCGAGGAAGAAAAATGTGCCA-CA-AC-CC
829 ---GATGGCGCCCCGACGAAGAAAAATACGACACCAGACACC
14505452 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTA
1 T-GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTA
* * * * * * * *
14505517 TGCCTAAGTCAACCCACGAAACAATCGTGTGGGTGCACAACTGACCAGAGGGGCAGGATGCGTAA
65 TGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAA
**
14505582 GCCAGGGATCGACCAGGTTCCCCCTCTGCGT-CTTGCCGATCCTGCTGTCGCAACCCTCAGTCCG
130 GCC-GGGATCGACCAGG-TCCCCCTCTGCGTGCTT-CCGATCCTGCTACCGCAACCCTCAGTCCG
* *
14505646 GTCTGATCTTAGATTGGGAATGAACTCCGTATCCCTAAGCCAATCGACGAAACAAGCTGGCGTGC
192 GTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGC-GGCGTGC
* * *
14505711 GGCGGGACAGGCATTATGTTGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTA
256 GGCGGG-CAGGCA-TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
*
14505776 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAAT-CCATTTTTATGGCTTGTAAATTCA
319 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCC-AATGCCATTTTTATGGCTTGTAAATTCA
* *
14505840 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACAACTCGTTTTCTATTTTTCAT
383 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCAC
*
14505905 GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAA
448 GATTTTAGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAA-GAGTTTTGGCCCCAA
* * * *
14505970 ACTTGGCAGA-GATGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCAA
512 ACTTGGTAGACG-TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
14506034 AGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTG
576 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTG
**
14506099 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTTGAGGTTTGATGAGG
641 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGCT-AGTTCTCAAGGTTTGATGAGG
* * * * * *
14506163 GATACGGTGCC-AATATAAGGGCCAACTACCAGCACCCATCGTACATCTTGTGCGCGCACCCCCC
705 GATA-GGGGCCAAATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC
* * * * *
14506227 CGGCCCCCCCGATCGTCGGAACCACAATGCCGTCGGTCAAGCTCTCCGGCGATGCTC
768 CGG-CCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTC
14506284 AGGCGATGGT
Statistics
Matches: 1485, Mismatches: 160, Indels: 106
0.85 0.09 0.06
Matches are distributed among these distances:
863 39 0.03
864 312 0.21
865 181 0.12
866 4 0.00
867 91 0.06
868 90 0.06
869 9 0.01
870 3 0.00
871 7 0.00
872 1 0.00
873 3 0.00
874 30 0.02
875 10 0.01
876 4 0.00
877 174 0.12
878 3 0.00
879 11 0.01
880 178 0.12
881 277 0.19
882 13 0.01
883 45 0.03
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (867 bp):
TGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTAT
GCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAG
CCGGGATCGACCAGGTCCCCCTCTGCGTGCTTCCGATCCTGCTACCGCAACCCTCAGTCCGGTCT
GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGCGTGCGGCGG
GCAGGCATACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTAG
AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGCTAGTTCTCAAGGTTTGATGAGGGATAGGGGCCA
AATATAAAGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATC
GTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCTGATGATGGCGCCCCGACGAA
GAAAAATACGACACCAGACACC
Found at i:14507101 original size:715 final size:715
Alignment explanation
Indices: 14505632--14507105 Score: 2113
Period size: 715 Copynumber: 2.1 Consensus size: 715
14505622 CCTGCTGTCG
* * * ** * *
14505632 CAACCCTCAGTCCGGTCTGATCTTAGATTGGGAATGAACTCCGTATCCCTAAGCCAATCGACGAA
1 CAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAA
* * * **** * *
14505697 AC-AAGCTG-GCGTGCGGCGGGACAGGCATTATGTTGGCCAGAGAGACGGGATGCGCAAGCTGTG
66 ACGAAG--GAAC--G-GGCGGG-TAGGCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCGTG
*
14505760 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAAATCCATTTTTA
125 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAATCCATTTTTA
*
14505825 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACAACTCG
190 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCG
* ** *
14505890 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
255 TTTTCTATTTTTCACGATTTTCAAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
* * * *
14505955 GAGTTTTGGCCCCAAACTTGGCAGAGATGATCCTTGTATTTTTTTTGGCTTGCACAAAAAAATTC
320 GAGTGTTGGCCCCAAACTTGGCAGAGATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATC
*
14506020 AGCTAAAAACTCAAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
385 AGCCAAAAACTCAAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
14506085 TTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTG
450 TTTAAGGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
14506150 AGGTTTGATGAGGGATACGGTGCCAATATAAGGGCCAACTACCAGCACCCATCGTACATCTTGTG
515 AGGTTTGATGAGGGATACGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTG
* * * * *
14506215 CGCGCACCCCCCCGGCCCCCCCGATCGTCGGAACCACAATGCCGTCGGTCAAGCTCTCCGGCGAT
580 CGCACACCCCCCCGACCCCCCCAATCGCCGGAACCACAATGCCGTCGGTCAAGCTCTCCGACGAT
* **
14506280 GCTCAGGCGATGGTGCCCCGGCAAAGAAAAATGTGGCACCAGCACATACCTAAGCCCAGCATGTG
645 GCTCAGGCGATGGTGCCCCGACAAAGAAAAATGCAGCACCAGCACATACCTAAGCCCAGCATGTG
*
14506345 CTGCCA
710 CTACCA
* ** * *
14506351 TAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAA
*
14506416 ACGAAGGAACGGGCGGGTAGGCACTACACCGGCCAGAGAGACGAGATGTGCAAGCCGTGGATCGA
66 ACGAAGGAACGGGCGGGTAGGCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGA
* **
14506481 TAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGTATGCC-AATGCCATTTTTATGGCT
131 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAAT-CCATTTTTATGGCT
14506545 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTC
195 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTC
* * *
14506610 TATTTTTCACGATTTTCAAAACCTTTTACGGTTCGGGATTTTTTAAAATTTTTTTTG-GAGGAGT
260 TATTTTTCACGATTTTCAAAACCTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCGAAAGGAGT
* *
14506674 GTT-GCACCCAAACTTGGTAGACG-TGATCCTT-TAATTTTTGTTGGCATGCATAAAAAAAATCA
324 GTTGGC-CCCAAACTTGGCAGA-GATGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAAAATCA
* *
14506736 GCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
386 GCCAAAAACTCAAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
14506801 TTAAGGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
451 TTAAGGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
*
14506866 GGTTTGATGAGGGATA-GAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
516 GGTTTGATGAGGGATACG-GGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTG
* * *
14506930 CGCACACCCTCCCGACCCCCCCAATCGCCGGAACC-CTAATGCCGTCGGTCAGGTTCTCCGACGA
580 CGCACACCCCCCCGACCCCCCCAATCGCCGGAACCAC-AATGCCGTCGGTCAAGCTCTCCGACGA
* * ** * *
14506994 TGCTCCGGCGATGGTTCCCCGATGAAGAAAAATGCAGCACCAGCACATGTCC-GAGCCCAGCATG
644 TGCTCAGGCGATGGTGCCCCGACAAAGAAAAATGCAGCACCAGCACAT-ACCTAAGCCCAGCATG
*
14507058 TGCTACCG
708 TGCTACCA
* *
14507066 CCACCCTCAATCCGGTCCGATCTTGGACTGGGAATGAACT
1 CAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACT
14507106 CCGTATGCTT
Statistics
Matches: 673, Mismatches: 72, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
714 8 0.01
715 584 0.87
716 16 0.02
717 1 0.00
718 1 0.00
719 60 0.09
720 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (715 bp):
CAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAACCGACGAA
ACGAAGGAACGGGCGGGTAGGCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGA
TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAATCCATTTTTATGGCTT
GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCT
ATTTTTCACGATTTTCAAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTGT
TGGCCCCAAACTTGGCAGAGATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCCAA
AAACTCAAAGTGTACAAGATTTCGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAG
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
GATGAGGGATACGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGCACATCATGTGCGCACA
CCCCCCCGACCCCCCCAATCGCCGGAACCACAATGCCGTCGGTCAAGCTCTCCGACGATGCTCAG
GCGATGGTGCCCCGACAAAGAAAAATGCAGCACCAGCACATACCTAAGCCCAGCATGTGCTACCA
Found at i:14508235 original size:26 final size:26
Alignment explanation
Indices: 14508206--14508258 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14508196 CCAGTCCAAT
*
14508206 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14508232 CTTAGACTGGGAATTAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14508258 C
1 C
14508259 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14509135 original size:26 final size:26
Alignment explanation
Indices: 14509106--14509158 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14509096 CCAGTTCGAT
*
14509106 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14509132 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14509158 C
1 C
14509159 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14511848 original size:875 final size:869
Alignment explanation
Indices: 14509990--14513256 Score: 4302
Period size: 875 Copynumber: 3.8 Consensus size: 869
14509980 AACCTTCGGT
* *
14509990 CAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
1 CAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * *
14510055 ATTTCTGCATGCCAATAAAATTTTTATGGCTTGTAAATTCATGCAATGGTCCCTTAAGCCTTCAT
66 ATTTCTGCATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
*
14510120 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAAATTTTTACGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC
* * *
14510185 GGGATTTGTTAAAATTTTTTCGGAAGGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGAAT
196 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * *
14510250 TTTTGTTGGCATGCACAAACAAATTCAGCCAAAAACTGGAAGTGTACAAGATTTTGTGACCAATT
261 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTT
*
14510315 GAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
326 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
*
14510380 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAG
391 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * * * *
14510445 CACCAGCACCCATCGCATATCATGTGCGCACACCCCCCGGCCACACCGATCGTCGGAACACCGAT
456 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACC-CCCCGATCGTCGGAACCCCAAT
** * * * * * * **
14510510 GCCATCGGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCTCGACGAAGAAAAATTCGGCAGT
520 GCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACC
* * * *
14510575 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCTGTCTGATCTTAGATTGGGAA
585 AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGT-CAGTCCGATCTTAGACTGGGAA
** * * * *
14510640 TGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGC
649 TGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAA-CGGCCAGAAGGGC
* * *** *
14510705 GGGATGTGCAAGCCGGGGTTCAACCGGGTCCCCCTCTGCATGCTATCATCCTACTG-CTGCAACA
713 GGGATGCGCAAGTCGGGG-TCGGTCGGGTCCCCCTCTGCATGCTA-CATCC-ACTGTC-GCAACC
* *
14510769 CTCAGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGAACGAAACGA
774 CTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG-ACGAAAC-A
* *
14510833 GAGGGATGGCGCGTGGGCGGGCACTACGTCGGC
837 GAGGGATGGCGGGTGGGCGGGCACTACGCCGGC
*
14510866 CAGAGAGACGAGATGCGCAATCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
1 CAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* ** * * * *
14510931 ATTTTTGTGTGCCAATGCCATTTTTCTGGCTCGTAAATTCATACAATGGTCCTTTAAGCCTTCAC
66 ATTTCTGCATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * **
14510996 GTGAAGTTTCATGGCAAGACGACTCATTTTTTGTTTTTCATGATTTTCGAAACTTTTTGGGGTTC
131 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC
* *
14511061 GGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAGCTTGGTAGACGTGATCCTTGTAT
196 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * *
14511126 TTTTGTTGGCATGGACAAAAAAATTCAGGTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTT
261 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTT
* *
14511191 GAAAAAAGTGTCCCCATTTTAGACATTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
326 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * * *
14511256 GCTCTTTAAGTGGGTGTGAGTTCTCGATGTTTGATGAGGGATAGGGGGCTAATATAAGGGTCAAG
391 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
*
14511321 TACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATG
456 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATG
* * * * ** *
14511386 TCGCTGGTCTGGTTCTCCGGTGATGCTTTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
521 CCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCA
** * *
14511451 GCACATGCCCGAGCGTAGCATGTGCTGCCGTAACCCTTGGTCCAGTCCGATCTTAGATTGGGAAT
586 GCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGT-CAGTCCGATCTTAGACTGGGAAT
*
14511516 GAACTCTGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAACAGGCCAGAAGGGCG
650 GAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAAC-GGCCAGAAGGGCG
*
14511581 GGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCACTGTCGCAACCCT
714 GGATGCGCAAGTCGGGG-TCGGTCGGGTCCCCCTCTGCATGCTA-C-ATCCACTGTCGCAACCCT
** ** * * *
14511646 TGGTCCAATTTGATCTTAGACTGGGAATGAACTCCATATGCCTGAGCCAACCGACGAAACAAGAG
776 CAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-AGAG
*
14511711 GGAGGGCGGGTGGGCGGGCACTACGCCGGC
840 GGATGGCGGGTGGGCGGGCACTACGCCGGC
*
14511741 CAGAGAGACGAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
1 CAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * * *
14511806 ATTTCTACGTGCCAATGACATTTTTGTGGCTTGTAAATTCATACAATGGCCCCTTAAGCCTTCTC
66 ATTTCTGCATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
14511871 ATGAAGTTTCATGGCAAGACAACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTACTGTTC
131 GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC
* * * * *
14511936 GGGGTTTTGTAAAAATTTTTCGGAAGGAGTTTTCGCCCCAAAATTGGTAGACGTGATCCTTGTAT
196 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * *
14512001 TTTTGTTGGCATGCAGAAAAATATTCAGCTAGAAACAAGAAGTGTACAAGATTTTGTGACCATTT
261 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTT
14512066 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
326 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * * ** **
14512131 GCTCTTCAAGGGGGTGTGAGTTCTCGAGGATTGATGAGGGATAGTGCACCAATATAAATGCCAAG
391 GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
**
14512196 TACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCCGACCCCTTGATCGTCGGAACCCCAA
456 TACCAGCACCCATCGCACATCATGTGCGCAC-A-CCCCCCGACCCCCCGATCGTCGGAACCCCAA
* * * *
14512261 TGCCGCCGTTCAGGTTCTCCGGCGACGCTCCGGCGATGGTGCCCCGGCAAAGAAAAATGTGGCAC
519 TGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCAC
* * *
14512326 CAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGATCCGATCTTAAACTGGGA
584 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCAG-TCCGATCTTAGACTGGGA
* * ***** * ** * **** **
14512391 ATGAACTCCGTATG-CTTAGACTGGGAATGAACTCCGTATGCCTAAG-TCAAC--CCATGAAACG
648 ATGAACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAACGGCCA-GAAGGG
* * * * *
14512452 AGTGTACGGGC--GCTC--AGTCGGTCGGGTCCCCCTCTGCATGCT--AT---C-GT---AACCC
712 CG-GGATGCGCAAG-TCGGGGTCGGTCGGGTCCCCCTCTGCATGCTACATCCACTGTCGCAACCC
*
14512504 TCATTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC-GA-
775 TCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAG
* * *
14512567 -GCTGGTGGGTGGGCGAGCACTACGCCGGC
840 GGATGGCGGGTGGGCGGGCACTACGCCGGC
* * * * *
14512596 CAGAGAGACGGGATGCACAAACCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCATATCTTCAT
1 CAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* ** * *
14512661 ATTTATGCATGCTGATGCCATTTTTATTTG-TTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
66 ATTTCTGCATGCCAATGACATTTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
14512725 CGTGAAGTTTCATGGCAAGACGACTTATTTTCTATTTTTCATGATTTTCAAAACTTTTTGCGGTT
130 CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTT
* ** *
14512790 CGAGATTTTTTAAAA--TTTTCGGAAGGAGTTTTGGCCCCAAACCAGGTAGAGGTGATCCTTGTA
195 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* *
14512853 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
260 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATT
* *
14512918 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGTAAACCTGTAAAATCTCAAA
325 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* * *
14512983 TGCTCTTTAAGGGGGTGTGAGTTGTCAAGGTTTGATGAGGGATAAGGGGCAAATATAAGGGCCAA
390 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * *
14513048 GTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCGGCCCCCCTATCGCCGGAGCCCCAAT
455 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAAT
** * ** ** *
14513113 GCCGCCGGTCAACTTCTCTC-GCGATGCTCTGGCGATGGTGCCTAGGTAAAGAAAAATGTGGCAC
520 GCCGCCGGTCAGGTTCTC-CGGCGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCAC
* * * * *
14513177 CAGCACCTGGCCGAGCCCAGCATGTGCTGTCGTAACCCTCGATCAGGTCTGATCTTAGACTGGGA
584 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCA-GTCCGATCTTAGACTGGGA
14513242 ATGAACTTCC-TATGC
648 ATGAAC-TCCGTATGC
14513257 TTAGACTGGG
Statistics
Matches: 2105, Mismatches: 271, Indels: 54
0.87 0.11 0.02
Matches are distributed among these distances:
851 147 0.07
852 6 0.00
853 250 0.12
855 206 0.10
856 2 0.00
857 2 0.00
859 58 0.03
862 2 0.00
863 1 0.00
866 2 0.00
870 24 0.01
871 1 0.00
872 4 0.00
873 7 0.00
874 6 0.00
875 756 0.36
876 480 0.23
877 151 0.07
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (869 bp):
CAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
ATTTCTGCATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
GTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTC
GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
GCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATG
CCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCA
GCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCAGTCCGATCTTAGACTGGGAATG
AACTCCGTATGCCTAAGTCAACCCATGAAATGAGTGTGCGGGCGCTCAACGGCCAGAAGGGCGGG
ATGCGCAAGTCGGGGTCGGTCGGGTCCCCCTCTGCATGCTACATCCACTGTCGCAACCCTCAGTC
TGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACAGAGGGATGG
CGGGTGGGCGGGCACTACGCCGGC
Found at i:14512408 original size:26 final size:26
Alignment explanation
Indices: 14512379--14512431 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14512369 CTGATCCGAT
14512379 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
*
14512405 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAAACTGGGAATGAACTCCGTATG
14512431 C
1 C
14512432 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAAACTGGGAATGAACTCCGTATG
Found at i:14513266 original size:26 final size:26
Alignment explanation
Indices: 14513230--14513282 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14513220 CAGGTCTGAT
14513230 CTTAGACTGGGAATGAACTTCC-TATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
14513256 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14513282 C
1 C
14513283 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 3 0.12
26 23 0.88
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14513804 original size:781 final size:782
Alignment explanation
Indices: 14512691--14514238 Score: 2300
Period size: 781 Copynumber: 2.0 Consensus size: 782
14512681 TTTTTATTTG
*
14512691 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTATTTT
1 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
* * * *
14512756 CTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTCGGAAGGAGTTT
66 CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGACTTTTTAAAATTTTCAGAAGGAGTTT
** * *
14512821 TGGCCCCAAACCAGGTAGAGGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAA
131 TGGCAACAAACCAGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
14512886 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
196 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAAT
* * *
14512951 TGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCAAGGTTT
261 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
*
14513016 GATGAGGGATAAGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACA
326 GATGAGGGATAAGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCACGTGCGCACA
* * * * ***
14513081 -CCCCCCG-GCCCCCCTATCGCCGGAGCCCCAATGCCGCCGGTCAACTTCTCTCG-CGATGCTCT
391 CCCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAACTTCTCT-GACGATG-AAA
**** * ** * * **
14513143 GGCGATGGTGCCTAGGTAAAGAAAAATGTGGCACCAGCACCTGGCCGAGCCCAGCATGTGCTGTC
454 AAAAATGGTGCCCAGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACC
* * ** *
14513208 GTAACCCTCGATCAGGTCTGATCTTAGACTGGGAATGAACTTCCTATGCTTAGACTGGGAATGAA
519 GTAACCCTCAATCAGATCCAATCTTAGACTGGGAATGAACTTCCTATGCTTAGACTAGGAATGAA
*
14513273 CTCCGTATGCCTAAGTCAACCCACG-AAACAAGCGTACGGAC-GCTCAGCCGGCCAGAA-GGCGG
584 CTCCGTATGCCTAAGTCAACCCACGAAAACAAGCGTACGGACAG-TCAACCGGCCAGAAGGGCGG
* * * * * *
14513335 GATGCGCAAGCAGGGGATCGAAAGGGTCTCCCTCAGCGTGTTGCCGATCTTGCTGCCGCAATCCT
648 GATGCACAAGCAGGGGATCGAAAGGGTCCCCCTCAGCGTCTTGCCGATCCTGCTGCCACAACCCT
* *
14513400 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAATCGACTTGTAAATTT
713 CGGTCCGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCCTATGCCAACCGACTTGTAAATTT
14513465 ATGGC
778 ATGGC
*
14513470 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
1 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
*
14513535 CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGACTTTTTAAAATTTTTTCAGAAGGATT
66 CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGACTTTTTAAAA--TTTTCAGAAGGAGT
** **
14513600 TTTGGCAACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTTTGAC
129 TTTGGCAACAAACCAGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG-C
*
14513664 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTTAGACACTTT
193 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTT
*
14513729 AATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
258 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGG
* * *
14513794 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTGCGC
323 TTTGATGAGGGATAAGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCACGTGCGC
* * * **
14513859 ACACCCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGTCTGTCAGGTTCTCTGACGATGAA
388 ACACCCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAACTTCTCTGACGATGAA
* * *
14513924 AAAAAATGGTGCCCCGACGAAGAAAAATGTGGTACCAGCACATGCCCGAGCCCAGCATGTGCTAC
453 AAAAAATGGTGCCCAGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTAC
* *
14513989 CGTAACCCTCAATCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTAGGAATGA
518 CGTAACCCTCAATCAGATCCAATCTTAGACTGGGAATGAACTTCCTATGCTTAGACTAGGAATGA
* * *
14514054 ACTCCGTATGCCTAAGTCAACCCACGAAAACGAGCGTGCGGGCAGTCAACCGGCCAGAAGGGCGG
583 ACTCCGTATGCCTAAGTCAACCCACGAAAACAAGCGTACGGACAGTCAACCGGCCAGAAGGGCGG
* *** * *
14514119 GATGCACAAGCGGGGGATCGGTTGGGTCCCCCTCTGTGTCTTGCCGATCCTGCTGCCACAACCCT
648 GATGCACAAGCAGGGGATCGAAAGGGTCCCCCTCAGCGTCTTGCCGATCCTGCTGCCACAACCCT
*
14514184 CGGTCCGGTCCGATCTTAGATTGGGAATAAACTCCGTATGCCTATGCCAACCGAC
713 CGGTCCGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCCTATGCCAACCGAC
14514239 GAAATGAGCG
Statistics
Matches: 683, Mismatches: 77, Indels: 13
0.88 0.10 0.02
Matches are distributed among these distances:
779 109 0.16
780 9 0.01
781 246 0.36
782 142 0.21
783 66 0.10
784 111 0.16
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (782 bp):
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
CTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGACTTTTTAAAATTTTCAGAAGGAGTTT
TGGCAACAAACCAGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAAT
GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTT
GATGAGGGATAAGGGGCAAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCACGTGCGCACA
CCCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCGCCGGTCAACTTCTCTGACGATGAAAAA
AAATGGTGCCCAGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGT
AACCCTCAATCAGATCCAATCTTAGACTGGGAATGAACTTCCTATGCTTAGACTAGGAATGAACT
CCGTATGCCTAAGTCAACCCACGAAAACAAGCGTACGGACAGTCAACCGGCCAGAAGGGCGGGAT
GCACAAGCAGGGGATCGAAAGGGTCCCCCTCAGCGTCTTGCCGATCCTGCTGCCACAACCCTCGG
TCCGGTCCGATCTTAGACTGGGAATAAACTCCGTATGCCTATGCCAACCGACTTGTAAATTTATG
GC
Found at i:14514050 original size:26 final size:26
Alignment explanation
Indices: 14514012--14514064 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14514002 CCGATCCAAT
* *
14514012 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14514038 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14514064 C
1 C
14514065 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14516019 original size:26 final size:26
Alignment explanation
Indices: 14515984--14516035 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14515974 ACTCGAAGTG
14515984 TACAAAATTTTGTGACCATTTGAAAA
1 TACAAAATTTTGTGACCATTTGAAAA
*
14516010 TACAAGATTTTGTGACCATTTGAAAA
1 TACAAAATTTTGTGACCATTTGAAAA
14516036 AAGTGTCCCC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.40, C:0.12, G:0.13, T:0.35
Consensus pattern (26 bp):
TACAAAATTTTGTGACCATTTGAAAA
Found at i:14517387 original size:719 final size:719
Alignment explanation
Indices: 14516010--14517714 Score: 3108
Period size: 719 Copynumber: 2.4 Consensus size: 719
14516000 CATTTGAAAA
* * *
14516010 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATGGGC-ACTGGCA
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAAT-GGCTACTAGCA
* * * * * *
14516074 GCAAACCTGTAAAATCTCAATGATCTTTGAGGGGATGTGAGCTCTCGAGGTTTGATGAGGGATAG
65 GCAAACCTGTTAAATCTCAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
14516139 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCATAACCCCCCCGGCA
130 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCATAACCCCCCCGGCA
14516204 CCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGGTGAAGAA
195 CCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGGTGAAGAA
14516269 AAATACTGCAGCAGCAACCCTCAGTCCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTA
260 AAATACTGCAGCAGCAACCCTCAGTCCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTA
14516334 AGTCAACCCACGAAATGACCGTGCGTGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGTCGGG
325 AGTCAACCCACGAAATGACCGTGCGTGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGTCGGG
14516399 GATCGGCAGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGTAACCCTTAAACCGATCTGATC
390 GATCGGCAGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGTAACCCTTAAACCGATCTGATC
14516464 TTAGACTGGGAATGAACTCCGTATGCCTAAGCTAGCAGATGAAATGAGCGGGCGGGCGGGTGGGC
455 TTAGACTGGGAATGAACTCCGTATGCCTAAGCTAGCAGATGAAATGAGCGGGCGGGCGGGTGGGC
14516529 ACTGCGTCGGCCATAGAGATGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
520 ACTGCGTCGGCCATAGAGATGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
14516594 TAAATTTTTGAAACTTTTTACTGTTCAAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCTC
585 TAAATTTTTGAAACTTTTTACTGTTCAAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCTC
14516659 AAACTGGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
650 AAACTGGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
14516724 AAGTG
715 AAGTG
14516729 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTAGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTAGCAG
14516794 CAAACCTGTTAAATCTCAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
66 CAAACCTGTTAAATCTCAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
14516859 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCATAACCCCCCCGGCAC
131 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCATAACCCCCCCGGCAC
14516924 CCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGGTGAAGAAA
196 CCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGGTGAAGAAA
14516989 AATACTGCAGCAGCAACCCTCAGTCCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAA
261 AATACTGCAGCAGCAACCCTCAGTCCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAA
14517054 GTCAACCCACGAAATGACCGTGCGTGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGTCGGGG
326 GTCAACCCACGAAATGACCGTGCGTGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGTCGGGG
14517119 ATCGGCAGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGTAACCCTTAAACCGATCTGATCT
391 ATCGGCAGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGTAACCCTTAAACCGATCTGATCT
14517184 TAGACTGGGAATGAACTCCGTATGCCTAAGCTAGCAGATGAAATGAGCGGGCGGGCGGGTGGGCA
456 TAGACTGGGAATGAACTCCGTATGCCTAAGCTAGCAGATGAAATGAGCGGGCGGGCGGGTGGGCA
14517249 CTGCGTCGGCCATAGAGATGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGT
521 CTGCGTCGGCCATAGAGATGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGT
14517314 AAATTTTTGAAACTTTTTACTGTTCAAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCTCA
586 AAATTTTTGAAACTTTTTACTGTTCAAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCTCA
14517379 AACTGGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
651 AACTGGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
14517444 AGTG
716 AGTG
14517448 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTAGCAG
1 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTAGCAG
14517513 CAAACCTGTTAAATCTCAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
66 CAAACCTGTTAAATCTCAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * * ** **
14517578 GGGCCAATATAAGGGCCAAGTACCAACACCCATCACACATCATATGCGACA-CCCCCCGGCCCCC
131 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCG-CATAACCCC--CCCGG
** * * * * * **
14517642 CGACCCCCCGATCGCCAGAACCCCAATGCTGTCAGTTAGGTTCTCCGATGATGGTGCCCCGACGA
193 C-A-CCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGGTGA
14517707 AGAAAAAT
256 AGAAAAAT
14517715 GCAGCACCAG
Statistics
Matches: 954, Mismatches: 26, Indels: 8
0.97 0.03 0.01
Matches are distributed among these distances:
718 3 0.00
719 884 0.93
720 2 0.00
721 4 0.00
722 1 0.00
723 60 0.06
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (719 bp):
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTAGCAG
CAAACCTGTTAAATCTCAAAGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATGATGTGCGCATAACCCCCCCGGCAC
CCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGGTGAAGAAA
AATACTGCAGCAGCAACCCTCAGTCCGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTAA
GTCAACCCACGAAATGACCGTGCGTGCGCTCAGCCGACCAGAGGGGCGGGATGCACAAGTCGGGG
ATCGGCAGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGTAACCCTTAAACCGATCTGATCT
TAGACTGGGAATGAACTCCGTATGCCTAAGCTAGCAGATGAAATGAGCGGGCGGGCGGGTGGGCA
CTGCGTCGGCCATAGAGATGGGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGT
AAATTTTTGAAACTTTTTACTGTTCAAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCTCA
AACTGGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
AGTG
Found at i:14517813 original size:26 final size:26
Alignment explanation
Indices: 14517775--14517825 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14517765 CAGGTTCAAT
* * *
14517775 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
14517801 CTTAAACTAGGAATGAACTCCGTAT
1 CTTAAACTAGGAATGAACTCCGTAT
14517826 ACCTAAGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:14518713 original size:26 final size:26
Alignment explanation
Indices: 14518673--14518725 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14518663 CCGATCCGAT
14518673 CTTAGACTGCGAATGAACTCCATATG
1 CTTAGACTGCGAATGAACTCCATATG
*
14518699 CTTAGACTG-GAAATGAACTCCGTATG
1 CTTAGACTGCG-AATGAACTCCATATG
14518725 C
1 C
14518726 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCATATG
Found at i:14519442 original size:902 final size:896
Alignment explanation
Indices: 14517316--14519602 Score: 3197
Period size: 902 Copynumber: 2.5 Consensus size: 896
14517306 GTTTAGGTAA
* ** * *
14517316 ATTTTTGAAACTTTTTACTGTTCAAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCTCAAA
1 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAA
* * * *
14517381 CTGGGTAGACGTGATCCTTGTTTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
66 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAG
* * *
14517446 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTAGC
131 TGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
14517511 AGCAAACCTGTTAAATCTCAAA-GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
196 AGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
14517575 AGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCACACATCATATGCGACACCCCCCGGCCC
261 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-CA---CAC--CCC
* * * *
14517640 CCCGACCCCCCGATCGCCAGAACCCCAATGCTGTCAGTTAGGTTCT-C--CGA---T-----GAT
320 CCCGGCCCCCCGATCGCCGGAACCCCAATGCCG-CAGTCAGGTTCTCCGACGATGCTCCGACGAT
** *
14517694 GGTGCCCCGACGAAGAAAAATGC-AGCACCAGCACATGCTGGAGCCCAGCATGTGCTGCCGCAAC
384 GGTG-CCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAAC
* * * **
14517758 CCTCGGTCAGGTTCAATCTTAGACTGGGAATGAACTCTGTATGCTTAAACTAGGAATGAACTCCG
447 CCTCGGTCCGGTCCGATCTTAGACT-GGAATGAACTCCATATGCTTAAACTAGGAATGAACTCCG
* * *
14517823 TATACCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCAC
511 TATACCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATACAC
* * * * * *
14517888 AAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCGTAACCCTCGATCCG
576 AAGCCGAGGATCGACCGGGTCCACCTCTACGTACTGCCGATCCTGCTACCGTAACCCTCGATCCA
* * *
14517953 GTCTGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCTAACCGACGAAACGAGCGGGCGGGC
641 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGC
* * * *
14518018 GGGCAGGGACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTG
706 GGGCAGGGACTACGCCAGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * *
14518083 GGTTTAGGCATATCTTCATATTTATGTTAGCCAATGCCATTTATATGGCTTGTAAATTCATACAA
771 GGTTTAGGCACATCTTCATATTTATGATAGCCAATGCCATTTATAAGACTTGTAAATTCATACAA
** * *
14518148 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTTGTTTTTTATTTTTCATG
836 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTCACG
** ** * *
14518209 ATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAATTAGTTTTGGCCCCAGA
1 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAA
* * *
14518274 CTTGGTAGACGTGATCGTTGTATTTTTGTTGGTATGCACAAAAAAAATCAGCTAAAAACTGGAAG
66 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAG
* * * *
14518339 TGTACAACTTTTTGTGACCATTCGAAAATAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGC
131 TGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
14518404 AGCAAACCTGTAAAATCTCAAATGCTATTTAAGGGGGTGTGACTTCTTGAGGTTTGATGAGGGAT
196 AGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
14518469 AGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGCGGGCACA-CCCCCCGGC
261 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-
* *
14518533 CCCCCCGATCGCCGGAACCCTAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
325 CCCCCCGATCGCCGGAACCCCAATGCCG-CAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* ** * *
14518598 CCGACGAAGAAAAATGCGAAACCAGCATTTGCCCGAGCCCAGCATGTGCTACTGCAACCCTTGGT
389 CCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGT
* * *
14518663 CCGATCCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACT-GGAAATGAACTCCGTATGCC
454 CCGGTCCGATCTTAGACTG-GAATGAACTCCATATGCTTAAACTAGG-AATGAACTCCGTATACC
* * *
14518727 TAAGTCAACCCACGAAACGAGCGTG-GAGGCTCTCAGCCGGCCAGAGGGGCGAGATACGCAAGTC
517 TAAGTCAACCCACGAAACGAGCGTGCG-GGCGCTCAGCCGGCCAGAGGGGCGAGATACACAAGCC
* ** *
14518791 GAGGATCGATCGGGTCCACCTCTACGTACTGCCGATCCTGCTGTCGTAACCCTCGGTCCAGTCTG
581 GAGGATCGACCGGGTCCACCTCTACGTACTGCCGATCCTGCTACCGTAACCCTCGATCCAGTCTG
*
14518856 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCG
646 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGC-
*
14518921 GGCGGTCACTACGCCAGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
710 AG-GG--ACTACGCCAGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
14518986 GTTTAGGCACATCTTCATATTTCTGCAT-GCCAATGCCATTTTTAAGACTTGTAAATTCATACAA
772 GTTTAGGCACATCTTCATATTTATG-ATAGCCAATGCCATTTATAAGACTTGTAAATTCATACAA
* *
14519050 TGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
836 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTCACG
*
14519111 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTCTTTCGGAAGGATTTTTGGCCCCAAA
1 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAA
* * * *
14519176 CTTTGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATCAGCT-AAAACTCGAGG
66 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAG
* *
14519240 TGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGGT
131 TGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * * *
14519305 ATCAAACTTGTTAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTCGATGAGGGAT
196 AGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
14519370 AGGGGGCCAATATAAGGGCCAAGCACCAGCACGCATCGCACATCATGTGCGCACACCCCCCCTGG
261 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GG
* *
14519435 TCCCCCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGC
325 CCCCCCGATCGCCGGAACCCCAATGCCG-CAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* * * *
14519500 CTCAACAAAGAAAAATGTGACATCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
389 C-CGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGG
*
14519565 TCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGC
453 TCCGGTCCGATCTTAGACT-GGAATGAACTCCATATGC
14519603 GTAAGCCAAC
Statistics
Matches: 1223, Mismatches: 145, Indels: 42
0.87 0.10 0.03
Matches are distributed among these distances:
887 7 0.01
888 35 0.03
889 1 0.00
890 1 0.00
891 3 0.00
893 193 0.16
894 85 0.07
897 4 0.00
898 278 0.23
899 9 0.01
900 2 0.00
901 175 0.14
902 338 0.28
903 91 0.07
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAG
TGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
CCCCCGATCGCCGGAACCCCAATGCCGCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
GACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCC
GGTCCGATCTTAGACTGGAATGAACTCCATATGCTTAAACTAGGAATGAACTCCGTATACCTAAG
TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGAGATACACAAGCCGAGGA
TCGACCGGGTCCACCTCTACGTACTGCCGATCCTGCTACCGTAACCCTCGATCCAGTCTGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGGGCAGGGAC
TACGCCAGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTATGATAGCCAATGCCATTTATAAGACTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTCACG
Found at i:14520417 original size:717 final size:717
Alignment explanation
Indices: 14518838--14521055 Score: 3501
Period size: 717 Copynumber: 3.1 Consensus size: 717
14518828 CTGCTGTCGT
*
14518838 AACCCTCGGTCCAGTCTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGCCAACCGACGAA
1 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAA
* * * * *
14518902 ACGAACGGGCGGGCGGGCGGGCGGTCACTACGCCAGCCAGAGAGACGGGATACGCAAGCCGTGGA
65 ACGAACGGTCGGGCGGGCGGGCGG-GACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
*
14518967 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAAG
129 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * **
14519032 ACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTCATT
194 GCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTTGTT
* * * * *
14519097 TTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTCTTTCGGAAGGA
259 TTCTATTTTTCATGATTTTTGAAACTTTTTGCTGTTCGGGATTTCTTAAAATTTTTTCGGAAGGA
* * * *
14519162 TTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATCAG
324 GTTTTGGCCCCAAACTTAGTGGTCATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATCAG
14519227 CT-AAAACTCGAGGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
389 CTAAAAACTCGAGGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * *
14519291 TAATGGCTGCTGGTATCAAACTTGTTAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
454 TAATGGCTGCTGGCAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* * *
14519356 GTTCGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACGCATCGCACATCATGTGCG
519 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGTACATCATGTGCG
*
14519421 CACACCCCCCCTGGTCCCCCGATCGCCGGAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGC
584 CACACCCCCCC-GGTCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* * *
14519486 TCCGGCGATGGTGCCTCAACAAAGAAAAATGTGACATCAGCACATGCCCGAGCCCAGCATGTGCT
648 TCCGGTGATGGTGCCTCGACGAAGAAAAATGTGACATCAGCACATGCCCGAGCCCAGCATGTGCT
14519551 GCTGC
713 GCTGC
* * * ** *
14519556 AACCCTCGGTCCGGTCTGATCTTAGACTAGGAATGAACTCCATATGCGTAAGCCAACCGACGAAA
1 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
*
14519621 CGAACGGTCGGGCGGGCGGGCGGGGACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGAT
66 CGAACGGTCGGGCGGGCGGGC-GGGACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
14519686 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCATGCTAATGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG
*
14519751 TTTGCAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTTGTTT
195 CTTGCAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTTGTTT
14519816 TCTATTTTTCATGATTTTTGAAACTTTTTGCTGTTCGGGATTTCTTAAAATTTTTTCGGAAGGAG
260 TCTATTTTTCATGATTTTTGAAACTTTTTGCTGTTCGGGATTTCTTAAAATTTTTTCGGAAGGAG
* *
14519881 TTTTGGCCCCAAACTTGGTGGTCGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATCAGC
325 TTTTGGCCCCAAACTTAGTGGTCATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATCAGC
*
14519946 TAAAAAGTCGAGGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
390 TAAAAACTCGAGGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
*
14520011 AATGGCTGCTAGCAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
455 AATGGCTGCTGGCAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
14520076 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGTACATCATGTGCGC
520 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGTACATCATGTGCGC
*
14520141 ACA-CCCCCGGGTCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
585 ACACCCCCCCGGTCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
**
14520205 CGGTGATGGTGCCTCGGTGAAGAAAAATGTGACATCAGCACATGCCCGAGCCCAGCATGTGCTGC
650 CGGTGATGGTGCCTCGACGAAGAAAAATGTGACATCAGCACATGCCCGAGCCCAGCATGTGCTGC
14520270 TGC
715 TGC
*
14520273 AACCCTCGGTCC-GATCCGATCTTAGACTGGGAATGAACTCTGTATGCGTAAGCCAACCGACGAA
1 AACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
* *
14520337 ACGGATGGTCGGGCGGGCGGGCAGGGACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
65 ACGAACGGTCGGGCGGGCGGGC-GGGACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * *
14520402 TTGATAGCGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTGCATGCCAATGCCATTTTTATG
129 TCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
14520467 GCTTGCAAATTCATACAATGGTCTCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTTGTT
194 GCTTGCAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTTGTT
* * * **
14520532 TTCTATTTTTAATGATTTTTTAAACTTTTTGCTGTTCGAGATTTCTTAAAATTTTTTCAAAAGGA
259 TTCTATTTTTCATGATTTTTGAAACTTTTTGCTGTTCGGGATTTCTTAAAATTTTTTCGGAAGGA
* * * *
14520597 GTTTTGGCCCCAAACTTAGTGGTCATGATCCTTTTATTTTTGTTGGCATGCACAAAAGAATTCAG
324 GTTTTGGCCCCAAACTTAGTGGTCATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATCAG
* * *
14520662 CTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
389 CTAAAAACTCGAGGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
* * * * *
14520727 TAATGGCTACTGGCTGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTGTCGAG
454 TAATGGCTGCTGGCAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
* *
14520792 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGTACATCATGTGCG
519 GTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGTACATCATGTGCG
* * * * ** * *
14520857 CACACCCCCCCGGCCCCCCGATCGTCGAAACGCCAATGCCACCGGTCAGGTTCTTCGACGACGCT
584 CACACCCCCCCGGTCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCT
* * * * * *
14520922 CCGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCGGAGCCCAGGATGTGCTG
649 CCGGTGATGGTGCCTCGACGAAGAAAAATGTGACATCAGCACATGCCCGAGCCCAGCATGTGCTG
*
14520987 -TCGT
714 CT-GC
* * * *
14520991 AACCCTCAGTGCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
1 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
14521056 TAAGCGTGCA
Statistics
Matches: 1387, Mismatches: 106, Indels: 14
0.92 0.07 0.01
Matches are distributed among these distances:
716 1 0.00
717 666 0.48
718 530 0.38
719 190 0.14
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (717 bp):
AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA
CGAACGGTCGGGCGGGCGGGCGGGACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
TTGCAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGACGACTTGTTTT
CTATTTTTCATGATTTTTGAAACTTTTTGCTGTTCGGGATTTCTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTAGTGGTCATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAATCAGCT
AAAAACTCGAGGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTGCTGGCAGCAAACCTGTTAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACGCATCGTACATCATGTGCGCA
CACCCCCCCGGTCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
GGTGATGGTGCCTCGACGAAGAAAAATGTGACATCAGCACATGCCCGAGCCCAGCATGTGCTGCT
GC
Found at i:14521914 original size:26 final size:26
Alignment explanation
Indices: 14521885--14521934 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14521875 CTGGTCCGAT
*
14521885 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATAAACTCCGTATG
*
14521911 CTTAGACTGGGAATAAACTCCGTA
1 CTTACACTGGGAATAAACTCCGTA
14521935 CGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATAAACTCCGTATG
Found at i:14523457 original size:26 final size:26
Alignment explanation
Indices: 14523428--14523480 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14523418 TCGGTCCGAT
14523428 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
14523454 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
14523480 C
1 C
14523481 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:14524362 original size:26 final size:26
Alignment explanation
Indices: 14524326--14524379 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
14524316 GATCCGATCT
14524326 TAGACTGGGAATGAACTACGTATGCC
1 TAGACTGGGAATGAACTACGTATGCC
*
14524352 TAGACTGGGAATGAACTCCGTATGCC
1 TAGACTGGGAATGAACTACGTATGCC
14524378 TA
1 TA
14524380 AGTCAACCCC
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTACGTATGCC
Found at i:14525258 original size:26 final size:26
Alignment explanation
Indices: 14525219--14525271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14525209 CTGGTTCGAT
14525219 CTTAGACTACGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
**
14525245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTACGAATGAACTCCGTATG
14525271 C
1 C
14525272 CTAAGTCCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCCGTATG
Found at i:14526160 original size:26 final size:26
Alignment explanation
Indices: 14526121--14526173 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14526111 CCGATCTGAT
*
14526121 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGAGAATGAACTCT-GTATG
*
14526147 CTTAGATTGAGAATGAACTCTGTATG
1 CTTAGACTGAGAATGAACTCTGTATG
14526173 C
1 C
14526174 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCTGTATG
Found at i:14526721 original size:904 final size:903
Alignment explanation
Indices: 14522614--14528532 Score: 7305
Period size: 893 Copynumber: 6.6 Consensus size: 903
14522604 CCAGCAAGTA
* * * * * *
14522614 CCAGAGGGGCGGGATACGCAAGCCGGGGATAGGTCGGG-CTCCCCTCTACATGCTGTCGATCCTG
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC-CCCCTCTGCGTGCTGCCGATCCTG
* * * *
14522678 CTACC-GTAACCCTCGATCCGGTCCAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAAC
65 CTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * ** *
14522742 CGATGAAACGAGCGGGCAGGCGGGTGGGCGGGCGGGCACTACGTCGGCTAGAAAGATAGGATGCA
130 CGACGAAACGA---GG--GGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCG
* *
14522807 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTCAAGCACATCTTCATATTTCTGCGTGCCAATG
190 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
* * *
14522872 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAACCTTCACGTGAAGTTTCATCGCAA
255 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * ** *
14522937 GACAACTCATTTTCAATTTTTTATGCTTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
320 GACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTT
* * * *
14523002 TTTCAGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGAATGTAAA
385 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
14523067 AAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTTACCATTTAAAAAAAGTGTCCCCAT
450 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-
* * *
14523132 TTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAACCTCAAATGCACTTTAAGGGGGTG
514 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* **
14523197 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTATGAGCACCCATCGC
579 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
14523262 ACATCATGTGAGCACACCCCCCAGCCCCCCTGATCGTCGGAACCACAATGCCGCTGGTCAGGTTC
644 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
** ** * * *
14523327 TCCGGTGATATTCGGACGATGGAGCCCC-AGTGAAGAAAAATG-CGACACCAGCACATGCCCGAG
709 TCCGGCAATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCCG-CACCAGCACATGCCCGAG
* * * * * *
14523390 CCCAGCTTGTGCTGTCGCAACCCTCGATTCGGTCCGATCTTAGACTAGGAATGAACTTCGTATGC
772 CCCAGCATGTGCTGCCGCAACCCTTGCTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
* * * *
14523455 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAACC
837 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCC
14523520 GG
902 GG
* * * ** * * * ** *
14523522 CCAGAGGGGCTGGATGCGCAAGCCACGGG-TTGCCCCGGTCCCCCTCTACATGCTGTTGATCCTA
1 CCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
* * * ** * * * * * *
14523586 CTG-CTGCAACCCTCAGTCCAGTCTGACCTTAGACTGGGAATGAACTCCATATCCCTAAGTCGAT
65 CTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
** * * *
14523650 CGACGAAACGA-------GCAAGCGGGCGGGCACTACACCGGCCAGAGAAACGGGATGTGCAAGC
130 CGACGAAACGAGGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
14523708 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTTTGCGTGCCAATGCCATT
195 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
*
14523773 TTTATGGCTTGTAAATTCATACAATGGTCCCTTTAGCCTTCACGTGAAGTTTCATGGCAAGACGA
260 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
14523838 CTCGTTTTTTATTTTTCA-GAATTTTTGAAACTTTTTACGGTTCGAGATATTTTAAAATTATTT-
325 CTCGTTTTCTATTTTTCATG-ATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * * *
14523901 AGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTTGCCATGCATAAAA
389 A-GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
14523966 AAATTCAGCTAGAAACTCGAAGCGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTC
453 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
14524031 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
518 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
14524096 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
583 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
14524161 CATGTGCGCACACCCCCCCGACCCCCCCGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
648 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * *
14524226 GACAATGCTTCGATGATGGTGCCCCGACGAAGAAAAATGCTGCACCAGCACATGCCTGAGCCCAG
712 GGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAG
* * * * * * *
14524291 CATGTTCTGCCACAA-CCTTCGGTCTGATCCGATCTTAGACTGGGAATGAACTACGTATGCCTAG
777 CATGTGCTGCCGCAACCCTT-GCTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
* * * *
14524355 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCCCGGAACGAGCATACGGGCGCTCAGCCGA
841 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGG
* * * ** * * * *
14524418 CCAGAAGGGAGGGATGCACAAGCCGAAGATTGGTCGGGTCCCCCTCTGCGTGCTACCGATCTTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * **
14524483 TGCC-GTAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
66 TGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* ** * * * *
14524547 GACGAAACGAACGGGCGGATGGGTGGGTGGGCACTACGCCGGCCAGAGAGAAGGGATGCGCAAGT
131 GACGAAACG-AGGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
14524612 CGTGGATCGATATGGTGGTAGGTGGGTTTAGGTACATCTTGATATTTCTGCTTGCCAATGCCAGT
195 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * * *
14524677 TTTATGACTTGTAAATTCATACAATGGCCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGA
260 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
14524742 CTCGTTTTCTATTTTTCGCT-ATTTTTAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC
325 CTCGTTTTCTATTTTTC-ATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
14524806 AGAAGGAGTTTTGGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
389 AGAAGGAGTTTTGG-CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
*
14524871 AAATTCAGCT--AAA----AA----ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTC
453 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
14524926 AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
518 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
14524991 TGCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCGCACAT
583 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * * *
14525056 CATGTGCGCACACCCCCCCGGCCCACCCAATCGCCAGATCCCCAACGCCGCTGGTCAGGTTCTCC
648 CATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * *
14525121 GACAATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAG
712 GGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAG
* * * * * ** *
14525186 CATGTGTTGCCGAAACCCTTGGTCTGGTTCGATCTTAGACTACGAATGAACTCCGTATGCTTAGA
777 CATGTGCTGCCGCAACCCTTGCTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
* * *
14525251 CTGGGAATGAACTCCGTATGCCTAAGTCCGACCCCACGAAATGAGTGTACGGGCGCTCAGCCGG
842 CTGGGAATGAACTCCGTATGCCTAAGT-C-AACCCACGAAACGAGCGTACGGGCGCTCAGCCGG
* * * * * **
14525315 CCAGAAGGGCGGGATGCACAAGCCGGGGATC-AGTCGGGTCCCCTTCTGCATGCTGCCAATTTTG
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-TCGGGTCCCCCTCTGCGTGCTGCCGATCCTG
*
14525379 CTGCCA-CAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
65 CTGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * * *
14525443 CGACGAAACGA---GCGGACGGGCGGGTGGGCACTACGTCGACTAGAGAGACGGGATGGGCAAGC
130 CGACGAAACGAGGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* * * * *
14525505 CATCGATCGATAGAGTGGTAGGCGGGTTTGGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
195 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATT
* * *
14525570 TTTATGGCTTATAAATTCAAACAATGGTCCCTGAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
260 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
14525635 CTCGTTTTCTATTTTTTAAGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTATAATTTTTTCG
325 CTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
* * *
14525700 GAAGGCGTTTTGGCCCCAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAA
390 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * * *
14525765 ATTAAGCTAAGAACTTGAGGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCATTTCAG
455 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
14525830 ACACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
520 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
*
14525895 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCA
585 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * **
14525960 TGTTCACACACACCCCCAGCCCCCCTGATCGCCGGAACCCCAACGCCATCGGTCAGGTTCTCCGG
650 TGTGCGCACAC-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * *
14526025 CAATGATCCGACGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCAGATGCCCGAGGCCAGCA
714 CAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGCA
* * ** * * *
14526090 TGTGCTGCTGTAACAGTTGCTCCGATCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGATT
779 TGTGCTGCCGCAACCCTTGCTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT
* * * *
14526155 GAGAATGAACTCTGTATGCCTAAGTCAACCCGCGAAACGAGCGTGCGGGCGCTCAGCCGG
844 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGG
* * * * * *
14526215 CCAGAGGGGCGGGATGTGCAAGCCGGGGATCGACCGTGTCCCCCTCTGTGTGCTACCGATGCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
14526280 TG-CAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAA-GCAACTCCGTATGCCTAAGCCAAC
66 TGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATG-AACTCCGTATGCCTAAGCCAAC
* * * * * *
14526343 CGACGAAACTAGTGGGTGGGCGGGCGGGCGGGCACTACACCGACTAGAGAGACGGGATGCACAAG
130 CGACGAAACGAG-GGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * ****
14526408 CCATGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTTATATTTCCATTTGCCAATGCCAT
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
** * * *
14526473 TTTTATCACTTTTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGGCG
259 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
14526538 ACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTC
324 ACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
* * *
14526603 AGAAGGAGTTTTGGCCTCAAACTTGGTAGACTTGATCCTTGTATTTTTGTTGGCATGCAAAAAAA
389 AGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
** *
14526668 AATTCAATTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTA
454 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
14526733 GGCACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
519 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14526798 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATT
584 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
14526863 ATGTACGTACACCTCCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGCCGATCAGG---T---
649 ATGTGCGCACACC-CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
** * * **
14526922 ----T-CTCCGACGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAACACATGCTTGAGCCCAGC
713 GCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGC
* * * * *
14526982 ATGTGCTGCCGCAACCCTCAG-TCCGGTCCGCTCTTAGACTGGGAATGAACTCCATATGCTTACA
778 ATGTGCTGCCGCAACCCT-TGCTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGA
* * * *
14527046 CTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGACCGTGCGGGCGCTCAGCCGG
842 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGG
* * * * *
14527108 CCAGAGGCGCAGGATGCGCAAGTCGGGGATCGATCGGGTTCCCCTCTACGTGCTGCCGATCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * *
14527173 TGTC-GCAACCCTCGGCCCGTTCCAATCTTAGACTGGGATTGAACTCCGTATGCCTAAGCCAATC
66 TGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * *
14527237 GACGAAACGAGCGGGCGGGCAAGGCAGGCGGGCACTACGCCGGCCAGAGAGACGGGAAGCGCAAG
131 GACGAAACGAG-GGGCGGGC-GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
14527302 CCGTGGATCGATAGGGTGGTAGATGGGTTTAGGCACATCTTCATA-TTCTGCATTG-CAATGCCA
194 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC-GTGCCAATGCCA
* * *
14527365 TTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAT
258 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
14527430 GACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATCTTTTAAAATTTTTT
323 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
** * * *
14527495 TGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTAATCCTTGTATTTTTGTTGGCATGCCCAAAA
388 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
14527560 AAATTCCGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCTCATTTC
453 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
14527625 GGACACATTAATGGCTACTGGCAGCGAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
518 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
14527690 TTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACAT
583 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *
14527755 CATGTGCGCACACCTCCCCCGGCCCCCCCAATCGTCGAAACCTCAATGCCGCCGGTCAGGTTCTC
648 CATGTGCGCACA-C-CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* ** * * * * * *
14527820 TGGTGATGCTCTGGCGATGGTGCCCCGATGAAGAAAAATG-TGACACCAGTACATGCCTGAGCCC
711 CGGCAATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCCG-CACCAGCACATGCCCGAGCCC
* *
14527884 AGCATGTGCTGCTGTAA-CC---CT-C-G---G-TC-----C--GG--T---C-T-G-AT-CTTA
775 AGCATGTGCTGCCGCAACCCTTGCTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTA
* ** * * *
14527923 GACTGGGAATAAACTCCGTATGCCTAAGTCAACCCATAAAAGGAGCGAACGGGCGTTCAGCCGG
840 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGG
* * * * * * *
14527987 CTAGAGGGGCAGGATGTGCAAGCCAGGGATCAATCGGGTCCCCCTCTGCGTGCTGTCGGTCCTGC
1 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
* * * * **
14528052 TGCCA-CAACCCTCAGTCCGATCCAATCTTAGAGTGGGAATGAACTCCATATGCCTAAGCCAATT
66 TGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
*
14528116 GATGAAACGAGCGAGCGAACGGGCGAGCGGGCGAACGGGCGGGCAGGCACTACGCCGGCCAGAGA
131 GACGAAACGAG-G-G-G--C--G-G-GC-GG-G--CGGGC--G--GGCACTACGCCGGCCAGAGA
* * * * * *
14528181 GATGGGAAGCGTAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCT
179 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
14528246 GTGTGCCAATGCCATTTTTATGGCTTGTAAATTCCTACAATGGTTCCTTAAGCCTTCACGTGAAG
244 GCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * *
14528311 TTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATC
309 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATT
** * * *
14528376 TTTTAAAATTTTTTTGGAAGGACTCTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTTTTGT
374 TTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
*
14528441 TGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
439 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
14528506 AGTGTCCCAATTTCAGACATTTTAATG
504 AGTGTCCCCATTTCAGACACTTTAATG
14528533 AGTTCTCGAG
Statistics
Matches: 4359, Mismatches: 566, Indels: 185
0.85 0.11 0.04
Matches are distributed among these distances:
879 180 0.04
880 3 0.00
881 1 0.00
883 2 0.00
885 1 0.00
886 2 0.00
887 3 0.00
888 3 0.00
890 5 0.00
892 58 0.01
893 883 0.20
894 203 0.05
895 766 0.18
896 632 0.14
897 152 0.03
898 1 0.00
899 6 0.00
900 148 0.03
901 5 0.00
902 347 0.08
903 4 0.00
904 722 0.17
905 120 0.03
907 1 0.00
908 107 0.02
909 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGC
TGCCAGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GACGAAACGAGGGGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCA
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCCGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTTGCTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGG
Found at i:14527050 original size:26 final size:26
Alignment explanation
Indices: 14527014--14527066 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14527004 CCGGTCCGCT
*
14527014 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
*
14527040 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
14527066 C
1 C
14527067 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:14528144 original size:16 final size:16
Alignment explanation
Indices: 14528123--14528156 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
14528113 ATTGATGAAA
14528123 CGAGCGAGCGAACGGG
1 CGAGCGAGCGAACGGG
*
14528139 CGAGCGGGCGAACGGG
1 CGAGCGAGCGAACGGG
14528155 CG
1 CG
14528157 GGCAGGCACT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.21, C:0.26, G:0.53, T:0.00
Consensus pattern (16 bp):
CGAGCGAGCGAACGGG
Found at i:14528777 original size:26 final size:26
Alignment explanation
Indices: 14528741--14528799 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
14528731 CTCGATCCAG
14528741 TCTG-ATG-TTAGACTGGAAATGAAC
1 TCTGTATGCTTAGACTGGAAATGAAC
*
14528765 TCTGTATGCTTAGACTGGGAATGAAC
1 TCTGTATGCTTAGACTGGAAATGAAC
*
14528791 TCCGTATGC
1 TCTGTATGC
14528800 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (26 bp):
TCTGTATGCTTAGACTGGAAATGAAC
Found at i:14529632 original size:26 final size:26
Alignment explanation
Indices: 14529581--14529633 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14529571 CTGGTTTGAT
* *
14529581 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14529607 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14529633 C
1 C
14529634 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14530467 original size:26 final size:26
Alignment explanation
Indices: 14530416--14530468 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14530406 CCGATTTGAT
* *
14530416 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14530442 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14530468 C
1 C
14530469 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14531253 original size:26 final size:26
Alignment explanation
Indices: 14531217--14531269 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14531207 CCGATCCGAT
14531217 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14531243 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14531269 C
1 C
14531270 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14531798 original size:804 final size:801
Alignment explanation
Indices: 14530280--14531857 Score: 2303
Period size: 804 Copynumber: 2.0 Consensus size: 801
14530270 CCGGCCCCCC
* * *
14530280 CGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATACTTCGGCGATGGTGCCCTGG
1 CGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGACGATACTCCGGCGATGGTGCCCAGG
* *
14530345 TGAAGAAAAATATGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGATCCGA
66 TGAAGAAAAATACGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGATCCGA
** * * *
14530410 TTTGATCTTAGATTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
131 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGT
* * *
14530475 CAACCCAAGAAATGAACATGCGGGCGCTCAGTCGGCCAGAGGGACGGAATGCCCAAGCCGAGGAT
196 CAACCCAAGAAATGAACATACGGGCACTCAGCCGGCCAGAGGGACGGAATGCCCAAGCCGAGGAT
* *
14530540 CGACCTGGTCCCCCTATACGTGCTGACGATCCTGTTGCCGCAATCATCGATCCGGTCCAATCTTA
261 CGACCTGGTCCCCCTATACGTGCTGACAATCCTCTTGCCGCAATCATCGATCCGGTCCAATCTTA
*
14530605 GACTGGGAATGAACTCCATATGCCTAAGCCAACCCACGAAACGAGCGGACGGGCACTACGTCGGC
326 GACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGGACGGGCACTACGTCGGC
* * *
14530670 CAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCAT
391 CAGAGAGACGAGATGCGCAAACCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAC
**
14530735 ATTTCTGTGTCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
456 ATTTCTGCATCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
14530800 GTGAAGTTTCATGACAAGACGGCTCATTTTTTATTTTTCACGATTTTCAAAACTTTTTGCCGTTC
521 ATGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCCATTC
*
14530865 GGGATGTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATAT
586 GGGATGTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATAT
*
14530930 TTTTGCTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTT
651 TTTTGCTGGCATGCACAAAAAAATTCAGCTAGAAACTCAAAGTGTACAAGATTTTGTGACCATTT
*
14530995 GAAAAAAGTATCCCCATTTC-AGACACTTTAATGGCTACTAACAGCAAACCTGTAAAATCATGTG
716 GAAAAAAGTATCCCCATTTCGA-ACACTTTAATGGCTACTAACAGCAAACCTATAAAATCATGTG
14531059 TGCACAACCCCCCCGAAACCCT
780 TGCACAACCCCCCCGAAACCCT
* *
14531081 CGATCGTC-AGAACCCCAATGCCACCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGGCCCA
1 CGATCGTCGA-AACCCCAATGCCACCGGTCAGGTTCTCCGACGATACTCCGGCGATGGT-GCCCA
* * * * *
14531145 GG-GAAGAAAAATGCGACACCAGCACATGCTCGAA-CCCAGTATGTGCT-CCTACAACCCTTGGT
64 GGTGAAGAAAAATACGACACCAGCACATGC-CCAAGCCCAGCATGTGCTGCC-ACAACCCTCGAT
14531207 CCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCT
127 CCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCT
* * * * **
14531272 AAGTCAACCCACA-AAATGAGCGTACGGGCACTCAGCCGGCCAGAGGG-GGGGATGCGTAAGCCG
192 AAGTCAACCCA-AGAAATGAACATACGGGCACTCAGCCGGCCAGAGGGACGGAATGCCCAAGCCG
* * * * ** *
14531335 AGGATCGA-CTGGGTCCCCCTCTACGTGCTGTCAATCCTCTTGCTGCAA-CCTTTATTCTGGTCC
256 AGGATCGACCT-GGTCCCCCTATACGTGCTGACAATCCTCTTGCCGCAATCATCGA-TCCGGTCC
* * * *
14531398 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGC
319 AATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGA----GCGGACGGGC
* *
14531463 ACTACGTCGGCCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
380 ACTACGTCGGCCAGAGAGACGAGATGCGCAAACCATGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *
14531528 CACATCTTCACATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
445 CACATCTTCACATTTCTGCATCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * * **
14531593 TAAGCCTTCACATGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
510 TAAGCCTTCACATGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACT
* * * *
14531658 TTTTTCTATTCGTGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
575 TTTTGCCATTCGGGATGTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
14531723 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTA-AGAACTCAAAGTGTACAAGATT
640 GATCCTTATATTTTTGCTGGCATGCACAAAAAAATTCAGCTAGA-AACTCAAAGTGTACAAGATT
* * * ** *
14531787 TTGTTACCATTTGAAAAAAGTGTCCTCATTTCGAACACTTTAATGGCTACTGGCAGTAAACCTAT
704 TTGTGACCATTTGAAAAAAGTATCCCCATTTCGAACACTTTAATGGCTACTAACAGCAAACCTAT
14531852 AAAATC
769 AAAATC
14531858 TAAAATACTC
Statistics
Matches: 690, Mismatches: 74, Indels: 23
0.88 0.09 0.03
Matches are distributed among these distances:
799 5 0.01
800 109 0.16
801 198 0.29
802 10 0.01
803 1 0.00
804 366 0.53
805 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (801 bp):
CGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGACGATACTCCGGCGATGGTGCCCAGG
TGAAGAAAAATACGACACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACCCTCGATCCGA
TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAAGT
CAACCCAAGAAATGAACATACGGGCACTCAGCCGGCCAGAGGGACGGAATGCCCAAGCCGAGGAT
CGACCTGGTCCCCCTATACGTGCTGACAATCCTCTTGCCGCAATCATCGATCCGGTCCAATCTTA
GACTGGGAATGAACTCCATATGCCTAAGCCAACCCACAAAACGAGCGGACGGGCACTACGTCGGC
CAGAGAGACGAGATGCGCAAACCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAC
ATTTCTGCATCCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
ATGAAGTTTCATGACAAGACGACTCATTTTCTATTTTTCACGATTTTCAAAACTTTTTGCCATTC
GGGATGTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATAT
TTTTGCTGGCATGCACAAAAAAATTCAGCTAGAAACTCAAAGTGTACAAGATTTTGTGACCATTT
GAAAAAAGTATCCCCATTTCGAACACTTTAATGGCTACTAACAGCAAACCTATAAAATCATGTGT
GCACAACCCCCCCGAAACCCT
Found at i:14532149 original size:26 final size:26
Alignment explanation
Indices: 14532113--14532165 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14532103 CCGGTCTGAT
14532113 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
*
14532139 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCGTATG
14532165 C
1 C
14532166 CTAAATCAAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCGTATG
Found at i:14533206 original size:904 final size:899
Alignment explanation
Indices: 14531081--14535803 Score: 6132
Period size: 904 Copynumber: 5.3 Consensus size: 899
14531071 CCGAAACCCT
* * * * * *
14531081 CGATCGTCAGAACCCCAATGCCACCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGGCCC-A
1 CGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGATGATGCTCCGACGATGGTGCCCCGA
* * * * * *
14531145 GGGAAGAAAAATGCGACACCAGCACATGCTCGAACCCAGTATGTGCT-CCTACAACCCTTGGTCC
66 -CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC-ACAACCCTCGGTCC
* * * *
14531209 GATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCCTAA
129 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
14531274 GTCAACCCACAAAATGAGCGTACGGGCACTCAGCCGGCCAGAGGGG-GGGATGCGTAAGCCGAGG
194 GTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
* * * * * * *** *
14531338 ATC-GACTGGGTCCCCCTCTACGTGCTGTCAATCCT-CTTGCTGCAACCTTTATTCTGGTCCGAT
259 ATCGGTC-GGGTCCCCCTCTACGTGCTGTCGATCCTGC-TACCGTAACCCTCGGTCTGGTCCAAT
14531401 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC-AAA-A-CGA--GCGGGCGGGCGG
322 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATAGCGAGGGCGGGCGGGCGG
* *
14531461 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTTA
387 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
14531526 GGCACATCTTCACATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
452 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * *
14531591 CTTAAGCCTTCACATGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
517 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
* ** *
14531656 CTTTTTTCTATTC-GTGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
582 CTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
14531720 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAGAACTCAAAGTGTACAAGA
646 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
14531785 TTTTGTTACCATTTGAAAAAAGTGTCCTCATTTC-GAACACTTTAATGGCTACTGGCAGTAAACC
711 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAACC
* * *
14531849 TATAAAATCTAAAATACTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
775 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
14531914 AATATAAGGGCAAAGTACCAGTACCAATCGCACATCATGTGCGCACACACCCCCCGGCCCCCC
840 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCGG-CCCCC
* * * * * *
14531977 CGATTGCTGGAACCTCAATGCCGCCGATCAAGTTCTCCGGTGATGCTCCGACGATTGTGCCCCGA
1 CGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGATGATGCTCCGACGATGGTGCCCCGA
* * * *
14532042 TGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCAAGTGCTGCCGCAACCCTCGGTCCGG
66 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGG
* *
14532107 TCTGATCTTAGACTGGGAATGAACCCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAAT
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * **
14532172 CAAGCCACGAAACGAGCGTACGGGCGCTCAGCAGGCCAGAGGGGTGGGATGCGCAAGCCGGGGAT
196 CAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * * * **
14532237 CAGCCGGGTCCCCCTCTACGTGCTGTCAATCTTGCTACCGTAACCCTTGGTAC-GGTCTGATCTT
261 CGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGT-CTGGTCCAATCTT
*
14532301 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCAGATGGGCGGGTGGGCGG
325 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAT-AGC-GA-GGGCGGGCGGGCGG
* *
14532366 GCACTACACCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
387 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * * ** * *
14532431 GGGACATTTTCATATATCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCT
452 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
14532496 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTCTTTTTCACGATTTTCGAAA
517 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAA
** * *** *
14532561 CTTTTTACGGTTCAAAATTTCTTAAAATTTTTTTATAAGGAGTCTTGGCCCCAAACTTGGTAGAC
582 CTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
14532626 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
647 GTGATCCTTGTATTTTTTTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
14532691 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCAAACCT
711 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
14532756 ATAAAATCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
776 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
14532821 ATATAAGGGCCAAATACCATCACCCATCGCACATCATGTGCGCACACCCCCCGGCACTCT
841 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCC
* * * * * * *
14532881 CGATCCCCGGAAGCCCAATGTCGCCGGTCAAGTTCTTCGATGATGCTCCAATGATGGTGCCCCGG
1 CGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGATGATGCTCCGACGATGGTGCCCCGA
* *
14532946 CGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGG
66 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGG
14533011 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTGA-GCCTAAG
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT-ATGCCTAAG
* * * *
14533075 TCAAGCCATGAAACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
195 TCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
** *
14533140 TCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGCTACCGTAACCCTCGGTCTGATCCAATCTT
260 TCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCTGGTCCAATCTT
* * * * *
14533205 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGATGAAACTAGCGTGCGGACGGACGGGCAG
325 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-TAGCGAG-GG-CGGGCGGGCGG
* * *
14533270 GCACTACGCCGACCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTAGTAGGTGGGTTTA
387 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
*
14533335 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCC
452 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* *
14533400 CTTAAGCCTTCACGTGAAGTTT-ACTAGCAAGACGACTTGTTTTCTATTTTTCACGAATTTT-GA
517 CTTAAGCCTTCACGTGAAGTTTCA-TGGCAAGACGACTCGTTTTCTATTTTTCACG-ATTTTCGA
* *
14533463 AACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGACCCTAAACTTGGTAG
580 AACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
14533528 ATGTAATCCTTTTATTTTTTTTTGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
645 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * * *
14533593 ATTTTGTGACCACTTGAAAAAAGTGTCCCAATTTCGGACACATTAATGCCTACTGGCAGCAAACC
710 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * * * *
14533658 TGTAAAATCTCAAATGCTCTTTAAGGGTGAGTGAGTTCTTGCGGTTTAATGAGGGATAGGGGGCC
775 TATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
14533723 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAGACCCCCCCAGCCCCCC
840 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCC
* * * * *
14533785 CGATCGTCGAAACCCCAATGTCGTCGGTCAGGTTCTCC---G--G-T-----GATGGTGCCCCGA
1 CGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGATGATGCTCCGACGATGGTGCCCCGA
* * * *
14533839 CGAAGAAAAATGCAGCGCCAGCACATGCCCTAGCCCAGCATGTGCTGTCACAA-CC-C--T-C-G
66 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGG
* *
14533898 ---G---TT----T-----T----TCC-AAT-CTTAGATTGGGAATGAACTCCGTATGCCTAAGT
131 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
14533942 CAACCCACGAAACGAGCGTTCGGGCGTTCAGCCGACCAAAGGGGCAGGATGGGCAAGCCGGGGGT
196 CAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * * *
14534007 CGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGGTCTGGT-CAGATCTT
261 CGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCTGGTCCA-ATCTT
* **
14534071 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-A-C-A-AGCGGGCGGGTAGGCA
325 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATAGCGAGGGCGGGCGGGCGGGCA
* * * **
14534131 CTACACCGGACAGAGAGACGGGGTGCGCAAGTTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
390 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* **
14534196 ACATCTTCATATTTCTGGATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGTTT
455 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * **
14534261 AAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCGTTTTATATTTTTCACGATTTTCAAAACCA
520 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTT
** * * * *
14534326 TTCGCAGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTCGCCCCAAACTTGGTAGACGTG
585 TTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
14534391 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAAGATTTT
650 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
14534456 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTGGCAGCAAACCTATAA
715 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAA
* * *
14534521 AATCTCAAATGCTCTTTAAGTGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATCT
780 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
14534586 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCC
845 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * * * * *
14534641 CGATTGTCGAAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATAGTGCCCCGA
1 CGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGATGATGCTCCGACGATGGTGCCCCGA
* * * * *
14534706 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATATGCTACCGCAACCCTCGGTCCAG
66 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGG
* * * *
14534771 T-TCGATTTTAGACTAGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATGCCAAAG
131 TCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
** * * * * * * * *
14534835 TCAACCCATAAAACGAGCATGC-GGCGATCAGCCGGCCAAAGGGGCGGGATGCGTAAGTCAGGGA
195 TCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* ** ** * *
14534899 TCAGTCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCATAACCCTCGGTCTAGTCCAATCTT
260 TCGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCTGGTCCAATCTT
14534964 AGACTGGGAATGAACTCCGTATGCCTAAGCCAA-CGAACGAAAT---GA--GCGGGCGGGCGGGC
325 AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG-ACGAAATAGCGAGGGCGGGCGGGCGGGC
* *
14535023 ACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGTTTTAGG
389 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
*
14535088 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTATATTCATACAATGGTCCCT
454 CACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * * *
14535153 TAAGCCTTCACGTGAGGTTTCATGGTAAGACGACTTGTTTTCTATTTTTCATGATTTTCGAAACT
519 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACT
* * * * *
14535218 TTTTGCGGTTC-GGATTTTTTAAAA-TTTTTCGGGAGGTGTTTTGGCCCCAAAGTTGGTAGGCGT
584 TTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* * **
14535281 GATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTATTTAAGATTT
649 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
14535346 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTATTGGCAGCAAACCTGTA
714 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATA
* **
14535411 AAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGCCATAGGGGGCCAATA
779 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
14535476 TAAGGGCCAAGTACCAGCACCCATCGCACACCTTGTGCGCACACCCCCCAGCCCCC
844 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * * ** * ** **
14535532 CTGATCACCGAAACCCTAATACCGTTGGTCAAGCTCTGGGGCGATGCTCCGACGATGGTGCCCCT
1 C-GATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGATGATGCTCCGACGATGGTGCCCC-
* * * * *
14535597 G-CGAAGAGAAATACGGCACCAGCACATGCCCGATCCCAGCATGTGCTACCGCAACCCTCGGTCC
64 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCC
* * * *
14535661 GATCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTATGCCTAA
129 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * *
14535726 GTCAACCCATGAAACGAGCGTACGGGCGCTAAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAGGG
194 GTCAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
*
14535791 ATCGGTTGGGTCC
259 ATCGGTCGGGTCC
14535804 GTATGCCTAA
Statistics
Matches: 3363, Mismatches: 386, Indels: 159
0.86 0.10 0.04
Matches are distributed among these distances:
856 42 0.01
857 11 0.00
858 455 0.14
859 3 0.00
861 1 0.00
862 2 0.00
863 1 0.00
865 5 0.00
866 176 0.05
867 59 0.02
868 5 0.00
869 1 0.00
871 1 0.00
872 2 0.00
873 1 0.00
876 1 0.00
877 1 0.00
879 2 0.00
881 2 0.00
883 1 0.00
884 1 0.00
887 1 0.00
888 2 0.00
889 1 0.00
891 267 0.08
892 203 0.06
893 428 0.13
894 52 0.02
896 202 0.06
897 107 0.03
898 8 0.00
899 1 0.00
900 1 0.00
901 2 0.00
902 3 0.00
903 199 0.06
904 641 0.19
905 280 0.08
906 191 0.06
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
CGATCGCCGGAACCCCAATGCCGCCGGTCAAGTTCTCCGATGATGCTCCGACGATGGTGCCCCGA
CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGG
TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
CAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
CGGTCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCTGGTCCAATCTTA
GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATAGCGAGGGCGGGCGGGCGGGCAC
TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTT
TTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
Found at i:14534814 original size:26 final size:26
Alignment explanation
Indices: 14534778--14534829 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
14534768 CAGTTCGATT
14534778 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
14534804 TTAGACTAGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
14534830 CAAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:14535698 original size:26 final size:26
Alignment explanation
Indices: 14535669--14535721 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14535659 CCGATCCGAT
* *
14535669 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14535695 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14535721 C
1 C
14535722 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14536551 original size:26 final size:26
Alignment explanation
Indices: 14536501--14536551 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14536491 CGGTCCGATC
* *
14536501 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGCGAATGAACTCCATATGT
*
14536527 TTAGACTGCGAATGAACTTCATATG
1 TTAGACTGCGAATGAACTCCATATG
14536552 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCCATATGT
Found at i:14537453 original size:26 final size:26
Alignment explanation
Indices: 14537402--14537454 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14537392 CCGATCTGAT
*
14537402 CTTACACTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
* *
14537428 CTTACACTGGGAATGAAGTTCATATG
1 CTTACACTGGGAATGAACTCCATATG
14537454 C
1 C
14537455 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:14539236 original size:26 final size:26
Alignment explanation
Indices: 14539200--14539249 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14539190 TGGTCCAATT
14539200 TTAGACTGGGAATGAACTCCGTATTC
1 TTAGACTGGGAATGAACTCCGTATTC
14539226 TTAGACTGGGAATGAACTCCGTAT
1 TTAGACTGGGAATGAACTCCGTAT
14539250 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATTC
Found at i:14539446 original size:905 final size:902
Alignment explanation
Indices: 14535801--14540211 Score: 6309
Period size: 902 Copynumber: 4.9 Consensus size: 902
14535791 ATCGGTTGGG
* *
14535801 TCCGTATGCCTAAGCCAACCAATGAAACGAGCGGGCGGGCGG-GGGCGGGCACTACGTCGGCCAG
1 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGTCGGCCAG
* * * *
14535865 AGAGACGGGATGCGCAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATT
66 AGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* *
14535930 TTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCGCTTAAGCCTTCACGTG
131 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * **
14535995 AAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGTGGTTC-GA
196 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG-
* * * *
14536059 GATTTTTTAAAATTTTTTCGAAAGGTGTTTTGGCCCCATACTTGGTAGATGTGATCCTTGTATTT
260 GA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
14536124 TTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTTGATGTGTACAAGATTTTGTGACCATTTGA
324 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGA
14536189 AAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
389 AAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* * * * *
14536254 TCTTTAAGGGGGTGAGAGTTCTCGACGTTTGATGATGGATAGGTGGCCAATATAAGGGCCAACTA
454 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * ** *
14536319 CCAGCACCCATCGCACATCGTGTGTGCACACCCGCCCGACCCCCCCGATCGTTGGAACTCCAATG
519 CCAGCACCCATCGCACATCATGTGCGCACACCCGCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * *
14536384 CCGCCGGTCAGGTTCTCCGACGATACTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
584 CCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* * * *
14536449 GCACATGCCCAAGCCTAGCATCTGCTGCCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAAT
649 GCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
*
14536514 GAACTCCGTATGT-TTAGACTGCGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGA-ACG
714 GAACTCCGTAT-TCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGA-G
* * * ** * * *
14536577 TGCGGGCGCTCAACCGGCCAAAGGGGCGAGATGCATAAGCCGGGGATCGATCGGGTCCCACTCTG
777 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTG
* * * * *
14536642 TGTGCTGCTGATCCTGCTG-TCGCAACCCTCAGTCTGATCCAATCTTAGGCTGGGAATGAGC
842 CGTGCTGCTGATCCTGCTGCT-GCAACCCTCGGTTTGATCCAATCTTAGACTGGGAATGAAC
*
14536703 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGCCGGCCAG
1 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGTCGGCCAG
*
14536768 AGAGATGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
66 AGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
14536833 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
131 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * **
14536898 AAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGG
196 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGG
* *
14536963 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCACAAACTTGGTAGACATGATCCTTGTATTTT
261 A-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTT
* *
14537028 TTTTTGGCATGCACAGAAAAATTCAGCTAAAAACTTGAAGTATACAAGATTTTGTGACCATTTGA
324 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGA
* *
14537093 AAAAAGTGTCCCCATTTCAA-ACACTTTAAAGGCTACTGGCAGCAAACCTATAAAATCTCAAATG
389 AAAAAGTGTCCCCATTT-AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
14537157 CTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
453 CTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
14537221 ACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCACCCTCGATCGCCGGAACCCCAAT
518 ACCAGCACCCATCGCACATCATGTGCGCACACCCGCCCGGCCCCCCCGATCGCCGGAACCCCAAT
* * ** * *
14537285 GCCGCCGGTCAGGTTCTCCGATGTTGCTCTTGCGATGGTGCCCTGGCGAAGAAAAATGTGGCACC
583 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* * *
14537350 AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGATCTGATCTTACACTGGGAA
648 AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * *
14537415 TGAACTCCGTATGCTTACACTGGGAATGAAGTTCATATGCCTAAGTCAACCCACGAAACGAGTGT
713 TGAACTCCGTATTCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGAGT
* * * * * *
14537480 GCGGGCGCTCAGTCGACCAGAGGGGCGGGATGCGTAAGCCAAGGATCGGTCGAGTCCCCCTCTGT
778 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGC
* * * * ** **
14537545 GTGCTG-TCAATCCTACTGCCGCAACCCTC-GATCCAGTCTGATCTTAGACTGGGAATGAAC
843 GTGCTGCT-GATCCTGCTGCTGCAACCCTCGGTTTGA-TCCAATCTTAGACTGGGAATGAAC
* * * ** * *
14537605 T-CGTATGCCTAAGCCAACCGATGAAACGAGTGGGCAGGCGGGCATGCGGGCGCTACGCCGGCCA
1 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGCGGGCGGGCACTACGTCGGCCA
** * *
14537669 GAGAGATATGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGATATAGGCACATCTTCATAT
65 GAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * * * *
14537734 TTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGGCCCTTAAGACTTCACGT
130 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* **
14537799 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACAGTTTGG
195 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG
*
14537864 GATTTTTGAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
260 GATTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* * *
14537929 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAGCTCGAAGTGTAAAAGATTTTGTGACCATTTGA
324 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGA
* *
14537994 AAAAAGTGTCCCCATTTTAGACACTTTAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
389 AAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
14538059 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATATGGGCCAAGTA
454 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* *
14538124 CCAGCACCCATCGCACATCATGGGCGCACACCCTGCCC-GACCCCCCGATCGCCGGAACCCCAAT
519 CCAGCACCCATCGCACATCATGTGCGCACACCC-GCCCGGCCCCCCCGATCGCCGGAACCCCAAT
* * * * * *
14538188 GCCGCCGATCAAG--CT-C--C----CT--GGCGATGGTGCCCCGACGAAAAAAAATACGGCACT
583 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* * ** * * * *
14538242 AGCACATTCCCGAGCCCAGCATGTGCTGCCGTAATCCTCGGTTTGATCTGATTTTACACTGGGAA
648 AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* * * *
14538307 TGAACTCCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA-TATGCG
713 TGAACTCCGTATTCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGA-GAG
* * * * *
14538371 TGCGGTCGTTTAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGGCCGGGTCCCCCTCTG
777 TGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTG
* * * * **
14538436 CATGCTGCTGATCTTGCTACTGCAACCCTTGGTTTGATCTGATCTTAGACTGGGAATGAAC
842 CGTGCTGCTGATCCTGCTGCTGCAACCCTCGGTTTGATCCAATCTTAGACTGGGAATGAAC
* * *
14538497 TCCATATGCCTAAGCCAACCGACGAAACGAGCGGCCGGGCGGCCGAGCGGGCACTACGTCGGCCA
1 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG-CGGGCGGGCACTACGTCGGCCA
* * *
14538562 GAGAGAGGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATAT
65 GAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
14538627 TTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
130 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
14538692 GAAGTTTCATGGCAAAACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCAG
195 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG
* * *
14538757 GATTTTTAAAATTTTTTTGGAAGGATTTTTGGCCTCAAACTTGGTAGACGTGATCCTTGTATTTT
260 GATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * *
14538822 TTTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAACTGTACAAGATTTTGTGATCATTTGAA
325 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAA
* * * *
14538887 AAAAATGTCCCCATTTAAAACACTTTAATGGGTACTAGCAGCAAACCTGTAAAATCTCAAATGCT
390 AAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
14538952 CTTTAAGGGGGTGTGAGTTCCCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
455 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* * *
14539017 CAGTACCCATCGCACATCATGGGCGCACACCCCGCCCGGCCCCCCCGATCGTCGGAAACCCCAAT
520 CAGCACCCATCGCACATCATGTGCGCACA-CCCGCCCGGCCCCCCCGATCGCCGG-AACCCCAAT
* * *
14539082 GCCGTCGGTCATGCTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
583 GCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* * * * *
14539147 AGCACATGCCCGAGCCCAGTATGTGCTGCCGTAATCCTCGGTCTGGTCCAATTTTAGACTGGGAA
648 AGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAA
* *
14539212 TGAACTCCGTATTCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGAGT
713 TGAACTCCGTATTCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGAGT
* * * * *
14539277 GTGGTCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGAGGATCTGTCGGGTCCCCCTCTAC
778 GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGC
* * *
14539342 GTGCTACTGATCCTGCTGCTACAACCCTCGGTTTGATCCAATCTTAGATTGGGAATGAAC
843 GTGCTGCTGATCCTGCTGCTGCAACCCTCGGTTTGATCCAATCTTAGACTGGGAATGAAC
* *
14539402 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGTCGGGCGGCCGGGCGGGCACTACGTCGGCTA
1 TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGG-CGGGCGGGCACTACGTCGGCCA
* * * *
14539467 GAGAGATGGGACGCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATAT
65 GAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* *
14539532 TTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGGCTTCACGT
130 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
14539597 GAAGTTTCATGGCAAAACGACTTGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAA
195 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAG
* *
14539662 GATTTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCTCAAACTTGGTAGACATGATCCTTGTATTT
260 GATTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* *
14539726 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAACTGTACAAGATTTTGTGACCATTTGA
324 TTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGA
* *
14539791 AAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
389 AAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
*
14539856 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTA
454 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * * *
14539921 CCAGCAGCCTTCGCACATCATGTGCGCACACCC-CCCGACCCTCCCGATCACTGGAACCCCAATG
519 CCAGCACCCATCGCACATCATGTGCGCACACCCGCCCGGCCCCCCCGATCGCCGGAACCCCAATG
* * * ** * *
14539985 CCGCCGGTCAGGATCTCCGGCAATGCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCAGCACCA
584 CCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCA
* * *
14540050 GCACATGCACGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCAGTCCGATCTTAGACTGGGAAT
649 GCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAAT
* * * * * * * *
14540115 GAACTCCATATGCTTAGATTGGGAATGAACTTCATATGCTTAAGTTAACCCATGAAACGAGCGTA
714 GAACTCCGTATTCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGAGTG
* *
14540180 CAGGCTCTCAGCCGGCCAGAGGGGCGGGATGC
779 CGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
14540212 ATAAGCCGGG
Statistics
Matches: 3157, Mismatches: 316, Indels: 72
0.89 0.09 0.02
Matches are distributed among these distances:
891 1 0.00
892 512 0.16
893 257 0.08
894 21 0.01
896 2 0.00
897 1 0.00
899 1 0.00
900 2 0.00
901 175 0.06
902 883 0.28
903 390 0.12
904 137 0.04
905 764 0.24
906 11 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGCGGGCGGGCACTACGTCGGCCAG
AGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGG
ATTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
TTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAA
AAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
AGCACCCATCGCACATCATGTGCGCACACCCGCCCGGCCCCCCCGATCGCCGGAACCCCAATGCC
GCCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGC
ACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGA
ACTCCGTATTCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAACCCACGAAACGAGAGTGCG
GGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTG
CTGCTGATCCTGCTGCTGCAACCCTCGGTTTGATCCAATCTTAGACTGGGAATGAAC
Found at i:14540130 original size:26 final size:26
Alignment explanation
Indices: 14540101--14540156 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
14540091 CCAGTCCGAT
14540101 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14540127 CTTAGATTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14540153 CTTA
1 CTTA
14540157 AGTTAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14542868 original size:26 final size:26
Alignment explanation
Indices: 14542839--14542891 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14542829 CCGATCTGAT
*
14542839 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
14542865 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
14542891 C
1 C
14542892 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:14542979 original size:185 final size:185
Alignment explanation
Indices: 14542654--14543050 Score: 519
Period size: 185 Copynumber: 2.1 Consensus size: 185
14542644 CCTCCGTATG
* * * * * *
14542654 CTTAGACCGAGAATGAACTTCGTATGGTTGGACTGGGAATGAACTCCGTATGCCTAAGTCAACCA
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCA
* *
14542719 ACAAAACGAGCGTACAGGCGCTCAGCAGGCCAGAGGGGTGAGATGCACAAGCTAGGGATCGGTCG
66 ACAAAACGAGCGTACAGGCGCTCAGCAGGCCAGAGGGGCGAGATGCACAAGCTAGGGATCGATCG
* * * * * *
14542784 GGTTCCCTTCTGTGTGCTGTCGATCCTGCTACCGCAACCCTCGGTC-CGATCTGAT
131 GGTCCCCTTCTGCGTGCTATCGATCCTGCCACCACAACCCTCGGTCTAGATC-GAT
*
14542839 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCA
* * * * * * *
14542904 ACGAAACGAGTGTGCGGGCGCTCAGTC-GGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGATC
66 ACAAAACGAGCGTACAGGCGCTCAG-CAGGCCAGAGGGGCGAGATGCACAAGCTAGGGATCGATC
* * * *
14542968 GGGTCCCCTTCTGCGTGCTATCGATCCTGCCGCTACAACCCTTGGTCTAGTTCGAT
130 GGGTCCCCTTCTGCGTGCTATCGATCCTGCCACCACAACCCTCGGTCTAGATCGAT
*
14543024 CTTAGACTAGGAATGAACTCCGTATGC
1 CTTAGACTGGGAATGAACTCCGTATGC
14543051 ATAAGCCAAC
Statistics
Matches: 183, Mismatches: 27, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
185 179 0.98
186 4 0.02
ACGTcount: A:0.23, C:0.26, G:0.29, T:0.22
Consensus pattern (185 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGCATGCCTAAGTCAACCA
ACAAAACGAGCGTACAGGCGCTCAGCAGGCCAGAGGGGCGAGATGCACAAGCTAGGGATCGATCG
GGTCCCCTTCTGCGTGCTATCGATCCTGCCACCACAACCCTCGGTCTAGATCGAT
Found at i:14544664 original size:26 final size:26
Alignment explanation
Indices: 14544626--14544678 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14544616 CTGGTCTGAT
*
14544626 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTAGGAATGAACTCCCTATG
*
14544652 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCCTATG
14544678 C
1 C
14544679 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCCTATG
Found at i:14546149 original size:26 final size:26
Alignment explanation
Indices: 14546120--14546172 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14546110 CCGGACCGAT
*
14546120 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
14546146 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
14546172 C
1 C
14546173 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:14546953 original size:26 final size:26
Alignment explanation
Indices: 14546917--14546967 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14546907 GATCCGATCA
* *
14546917 TAGACTGGGAATGATCTCTGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
14546943 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14546968 GGGTTAAGTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:14547198 original size:26 final size:26
Alignment explanation
Indices: 14547158--14547210 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14547148 CCGGTCTGAT
*
14547158 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
* *
14547184 CTTAGATTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
14547210 C
1 C
14547211 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:14548855 original size:11 final size:11
Alignment explanation
Indices: 14548839--14548871 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
14548829 CGGTCAGGTT
14548839 CTCCGACGATG
1 CTCCGACGATG
14548850 CTCCGACGATG
1 CTCCGACGATG
14548861 CTCCGACGATG
1 CTCCGACGATG
14548872 GTGCCTCGAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.36, G:0.27, T:0.18
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:14549001 original size:26 final size:26
Alignment explanation
Indices: 14548950--14549002 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14548940 TTGGTCTGAT
* * *
14548950 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTAGCAATGAACTCCATATG
*
14548976 CTTAGACTAGCAATGAACTCCGTATG
1 CTTAGACTAGCAATGAACTCCATATG
14549002 C
1 C
14549003 CTGAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGCAATGAACTCCATATG
Found at i:14549864 original size:26 final size:27
Alignment explanation
Indices: 14549814--14549867 Score: 101
Period size: 26 Copynumber: 2.0 Consensus size: 27
14549804 CCGGTCCGAT
14549814 CTTAGACTGGGAAGTGAACTCCGTATG
1 CTTAGACTGGGAAGTGAACTCCGTATG
14549841 CTTAGACTGGGAA-TGAACTCCGTATG
1 CTTAGACTGGGAAGTGAACTCCGTATG
14549867 C
1 C
14549868 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
26 14 0.52
27 13 0.48
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (27 bp):
CTTAGACTGGGAAGTGAACTCCGTATG
Found at i:14550616 original size:11 final size:11
Alignment explanation
Indices: 14550596--14550627 Score: 55
Period size: 11 Copynumber: 2.9 Consensus size: 11
14550586 CGGTCAGGTT
*
14550596 CTCCGGCGATG
1 CTCCGACGATG
14550607 CTCCGACGATG
1 CTCCGACGATG
14550618 CTCCGACGAT
1 CTCCGACGAT
14550628 AGTGCCCCGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.16, C:0.38, G:0.28, T:0.19
Consensus pattern (11 bp):
CTCCGACGATG
Found at i:14550738 original size:26 final size:26
Alignment explanation
Indices: 14550709--14550761 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14550699 CCAGTCCGAT
14550709 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
*
14550735 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
14550761 C
1 C
14550762 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:14552504 original size:869 final size:870
Alignment explanation
Indices: 14547184--14552508 Score: 6050
Period size: 885 Copynumber: 6.0 Consensus size: 870
14547174 ACTCCATATG
* * * *
14547184 CTTAGATTGGCAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14547249 CGGCCAGAGGGCCGGGATGCGCAAGCAGGGGATC-GACTGGGTCCCCTTCTACGTGTTGCCGATC
66 CGGCCAGAGGG-CGGGATGAGCAAGCCGGGGATCGGTC-GGGTCCCCCTCTGCGTGCTACCGATC
* * ** * *
14547313 CTGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGGACTTCGTATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
14547378 ACCGATGAAACGAGCAGGCGGGCAGGCGGACAGGCTCTACGTCGGCCAGAGAGACGGGATGCGCA
194 ACCGACGAAAC--G-A-GCGGG-A-ACGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * ** *
14547443 AGTCGTGGATCGATATGGTGGTAGGTGATTTTAGGCACATCATCATATTTCTGCATGCCAATGCC
253 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTGCATGCCAATGCC
* *
14547508 AT-TTCTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAACTTTCATGGCAAG
317 ATCTT-TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
14547572 ACGACTCGTTTTCTATTTTTCATGATTTTTTATACCTTTTACGGTTCGGGATTTTTTAAAATTTT
381 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * ** *
14547637 TTCGGAAGGATTTTTAGCAACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTAG-CATGCACA
446 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTCATGCACA
* *
14547701 AAAAAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCCCAT
511 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
*
14547766 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGT
576 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * *
14547831 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAATGGCCAAGTGCCAGCACTCATCGCA
641 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
14547896 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCAGAACCCCAATACCGTCGGTCAGGTTCT
706 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCT
* * * ** ** * **
14547961 CCGGTGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAACATGGTACCAGCACAAGAACGAGCCC
771 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCC
* * * * * *
14548026 AGAATGTGCTACCGCAACCCTCGGTCCGATCCGAT
836 AGCATGTGCTACCGCAACCGTCAGTCTGGTCTGAT
* * * *
14548061 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGTGTGCGGGCGCTCATC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14548126 CGGCCAGAGGGGCGGGTTGAGTACGCTGGGGATCGGTTGGGTCCCCCTCTGCATGCTACCGATCT
66 CGGCCAGA-GGGCGGGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
* ** * * * * *
14548191 TTCTGTTGCAACCCGCTGTCTGGTCCAATCTTAGACTGGGAATAAACTCCATATGCCTAAGCTAA
130 TGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14548256 CCGACGAAACGAGCGGGAAGGCGGGCGGGCGAGCACTACGCCAGCCAG-GAAGATGGGATGCGCA
195 CCGACGAAACGAGCGGGAA--CGGAC--G-G-GCACTACGTCGGCCAGAG-AGACGGGATGCGCA
* * *
14548320 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATGTTTCTACGTGCCAATGCC
253 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT-ATTCTGCATGCCAATGCC
*
14548385 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
317 ATCTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** * * ** * *
14548450 CGACTATTTTTCTATTTTCCACGATTTTAAAAAATTTTTACTGTTCGGGATTTTTTGAAAATTTT
382 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTT
* * *
14548515 TTCGGAAGGAGTTTTAGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTGGTTGG-CATGCACA
446 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTCATGCACA
* * *
14548579 AAAAACTTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCAT
511 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14548644 TTCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCACATGCTCTTTAAGGGGGTGT
576 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * *
14548709 GATTTCTTGAGGTTTTATGAGGGATAGGGGGCCAATATAGGGGGCAAGTACCAGCACCCATCGCA
641 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
14548774 CATCATCTGCGCACGCCCCCCTCGGCCCGCCTGATCGCCAGAACCCCAATGCTGCCGGTCAGGTT
706 CATCATGTGCGCAC-ACCCCC-CGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTT
* **
14548839 CTCCGACGATGCTCCGACGATGCTCCGACGATGGTGCCTCGACGAAG-AAAAT-ACAGCACCAGC
769 CT-C--C---G----G-CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGA-CACCAGC
* * * ** *
14548902 ACATGCCC-AGCCTAGCATGTGCTGCCGGAAACC-TTGGTTTGGTCTGAT
822 ACATGCCCGAGCCCAGCATGTGCTACC-GCAACCGTCAGTCTGGTCTGAT
14548950 CTTAGACTGGGAATGAACTTCATATGCTTAGACTAGCAATGAACTCCGTATGCCTGAGTCAACCC
1 CTTAGACTGGGAATGAAC-TC-----C---G--T----ATG----CC-TA------AGTCAACCC
* * *
14549015 ACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGAGGTGGGATGCGCAAGCCGGGGATCGGTCG
40 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG-GGCGGGATGAGCAAGCCGGGGATCGGTCG
* * * *
14549080 GGTCCCCCTCTGCATGCTGCCGATCCTGCTACTGCAACCCTC-GATCTGGTCCAATCTTAGAC-G
104 GGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCCAATCTTAGACTG
* * * *
14549143 GCGAATGAACTCCGTATGCCTATGCCAACTGACGAAACGAGCGGGTA-GG-CGGGCACTATGTCG
168 G-GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGAACGGACGGGCACTACGTCG
*
14549206 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGGGTTTAGGCACATCTTC
232 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
14549271 ATA-T-T---T--C--TG----C---A-----TG------C---CAATGGTCCCTTAAGCCTTCA
297 ATATTCTGCATGCCAATGCCATCTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * *
14549306 CGTGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTGCAGTT
362 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
*
14549371 TGGGA-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
427 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * * *
14549435 TTTTTGTTGGT-ATGCATAAAACAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCAT
492 TTTTTGTTGGTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
14549499 TTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
557 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
14549564 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
622 ATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * * *
14549629 AGTTCCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCACCGGATCCCC
687 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCAGAACCCC
* * * * ** *
14549694 AATGTCGCTGGTCAGGTTCTCCGGCGATGCTTCGACGATAGTGCCCCGATAAAGAAAAATGTGGC
751 AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGAC
* * * * *
14549759 ACCAGCATATGCCCGAGCCCAGCATGTGCTATCGCAACCCTCAGTCCGGTCCGAT
816 ACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCGTCAGTCTGGTCTGAT
* * ***** * ** ****
14549814 CTTAGACTGGGAAGTGAACTCCGTATG-CTTAGACTGGGAATG-AAC-TCCGTATGCCTAAG-TC
1 CTTAGACTGGGAA-TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG--TGCGGGCGCTC
* * ** * * * * *
14549875 AACCCAAGAAATGAGCGTGCGGGCGCTCCGCCGGCTAG-AGGGGATCGGTCGGGTCCCCCAT-TA
63 -AGCC-GGCCA-GAG-G-GC-GG-GAT--G--AGCAAGCCGGGGATCGGTCGGGTCCCCC-TCTG
* * * * * * *
14549938 CGTGCTACTGACCCTACTGCCGCAACCCTCGGTTTGGTCCAATCTTAGATTAGGAATGAACTCCG
116 CGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCG
* * * * * *
14550003 TATGCCTAAGGCAACTGACGAGATGAGCAAGCGGGCGGAC-GAGCGGGCACGACGTCGACCAGAG
181 TATGCCTAAGCCAACCGACGA-A--A-CGAGC-GG-GAACGGA-CGGGCACTACGTCGGCCAGAG
* * * *
14550067 AGATGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTC
239 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTC
* * **
14550132 TACGTGCCAATGCCA-CTTTTATGTTTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
303 TGCATGCCAATGCCATC-TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* * *
14550196 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAATAC-TTTTACAGTTTGGG
367 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA-ACTTTTTACGGTTCGGG
14550260 A-TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
431 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* * * *
14550324 TGTT-CTCATGCATAAAAAAATTCAGCTAAAAACTTGAGGTGTACAAGATTTTGTGACCATTTGA
496 TGTTGGTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
* *
14550388 AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGC
561 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
14550453 TCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTT
626 TCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
14550518 CTAGCACCTATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGGATCCCCAATGC
691 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGC
* *
14550583 CACCGGTCAGGTTCTCCGGCGATGCTCCGACGATGCTCCGACGATAGTGCCCCGATGAAGAAAAA
756 CGCCGGTCAGGTTCTCCGGCGATGCTCCGACGA---T-----G---GTGCCCCGACGAAGAAAAA
* * * *
14550648 TGTGGCACTAGCATATGCCCGAGCCCAGCATGTGCTGTCGCAACTCTCGGTCCAGTCCGATCTTA
810 TGTGACACCAGCACATGCCCGAGCCCAGCATGTGC--T----A--C-C-G--CA-ACCG-TC--A
*
14550713 GACTGCGAATGAACTCCGTAT
859 GTCTG-G--T---CT--G-AT
* *
14550734 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACACACGAAACGAGCGTGCGAGCGCTCAG
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * *
14550799 TCGACCAGAGGGGCAGGATGCGCAAGCCGAGAATCGGTCAGGT-CCCCTCTGCGTGCTATCGATC
65 CCGGCCAGA-GGGCGGGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATC
* *** * *
14550863 CTGCTGCCGCAACCCTCAATCCAATCCAATCTTTGACTGGGAATGAACTCCATATGCCTAAGCCA
129 CTGCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* ** * * * * *
14550928 ACTGACGAAACGAGCGGGCGGGCTGG-CGGGCACTAAGTCAGACATAGAGACCGGATGCGCAAGC
194 ACCGACGAAACGAGC-GG-GAAC-GGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* * *
14550992 CGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTTTGCGTGCCAATGCCA-C
256 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTCTGCATGCCAATGCCATC
** * *
14551056 TTTTATGTTTTGTAAATTCATACAATTGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAGG
320 -TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
14551121 ACTCGTTTTCTATTCTTCACT-ATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAGAATTTTTT
384 ACTCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTT
* *
14551185 CAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGT-ATGCATAAA
448 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTCATGCACAAA
* *
14551249 ACAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
513 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14551314 AAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
578 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
14551379 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
643 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
14551444 TCATGTGCGTGCAC-CCCCCCGGTCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTTAGGTTCT
708 TCATGTGC--GCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
14551508 CAGGCAATGCTCCAACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCC
771 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCC
* * *
14551573 AGCATGTGCTACCGCAACCCTC-GATCTGGTTTAAT
836 AGCATGTGCTACCGCAACCGTCAG-TCTGGTCTGAT
*
14551608 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
14551673 CGGCCAGAGGGCGAGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGTGTGCTACCGATCCT
66 CGGCCAGAGGGCGGGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCT
* * * * * *
14551738 ACTGCTGCAACCCTCAGTCCGATCTAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAAC
131 GCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
14551803 CGACGAAACGAGC-GG-ACGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
196 CGACGAAACGAGCGGGAACGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* * * *
14551866 ATTGATTGGGTGGTAGGTGGGTTTTGGCACATCTTTATATTCATGCATGCCAATGCCATCTTTAT
261 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTC-TGCATGCCAATGCCATCTTTAT
*
14551931 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACACGT
325 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-
* * *
14551996 TTTTCTATTTTTCATGATTTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTTGGAA
389 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTT-AAAATTTTTTCGGAA
* *
14552061 GGAGTTTTGGCCCCAAACTTGGTAGACGTGGTCCTTGTATTTTTGTT-GTCATGCACAAAAAAAA
453 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTCATGCACAAAAAAAT
* * * *
14552125 ACAGGTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
14552190 ACTTTAATGGCTACTGGCAGCAAACCTGTAACATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
583 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
14552255 AGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGCCCAAGTACCAGCACCCATTGCACATCATG
648 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
** * *
14552320 TGCGCACACCCCCCGG-CCCCCCGATCATCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGA
713 TGCGCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
* ** * * *
14552384 TGCTCCCACGATGGTGCCTTGGCGAAGAAAAATGCGACAGCAGCACATGCCCGAGCCCAGCATGT
778 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGT
14552449 GCTACCGCAACCGTCAGTCTGGTCTGAT
843 GCTACCGCAACCGTCAGTCTGGTCTGAT
* *
14552477 CATAGACTGGGAATAAACTCCGTATGCCTAAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAG
14552509 CCAATTGATG
Statistics
Matches: 3806, Mismatches: 458, Indels: 376
0.82 0.10 0.08
Matches are distributed among these distances:
836 2 0.00
837 5 0.00
838 11 0.00
839 2 0.00
840 4 0.00
841 1 0.00
842 2 0.00
843 2 0.00
844 1 0.00
845 2 0.00
846 91 0.02
847 8 0.00
849 1 0.00
850 7 0.00
851 2 0.00
852 3 0.00
854 75 0.02
856 2 0.00
857 1 0.00
859 1 0.00
860 1 0.00
862 26 0.01
863 25 0.01
864 42 0.01
865 5 0.00
867 2 0.00
868 4 0.00
869 309 0.08
870 57 0.01
871 259 0.07
872 29 0.01
873 203 0.05
874 267 0.07
875 6 0.00
876 83 0.02
877 353 0.09
878 265 0.07
879 6 0.00
880 40 0.01
881 1 0.00
882 3 0.00
883 4 0.00
884 64 0.02
885 361 0.09
886 5 0.00
887 3 0.00
889 43 0.01
890 25 0.01
891 27 0.01
893 1 0.00
895 53 0.01
897 4 0.00
898 1 0.00
899 51 0.01
900 1 0.00
901 2 0.00
902 1 0.00
904 5 0.00
905 2 0.00
907 76 0.02
908 209 0.05
909 271 0.07
910 62 0.02
911 11 0.00
912 83 0.02
913 12 0.00
914 6 0.00
915 154 0.04
916 2 0.00
917 2 0.00
918 2 0.00
919 4 0.00
920 17 0.00
921 26 0.01
922 5 0.00
923 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (870 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGCGGGATGAGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCT
GCTGCCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGAACGGACGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTCTGCATGCCAATGCCATCTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCGGCCCCCCCGATCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGC
TCCGACGATGGTGCCCCGACGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCT
ACCGCAACCGTCAGTCTGGTCTGAT
Found at i:14553615 original size:711 final size:712
Alignment explanation
Indices: 14551764--14553948 Score: 3179
Period size: 711 Copynumber: 3.1 Consensus size: 712
14551754 GTCCGATCTA
* * *
14551764 ATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGGAC----G
1 ATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGGGCGGGCGGGTG
* * *
14551825 GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGAT-TGGGTGGTAGGTGGGTT
66 GGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAT-GGTGGTAGGTGGGTT
* * * *
14551889 TTGGCACATCTTTATATTCATGCATGCCAATGCCATCTTTATGGCTTGTAAATTCATACAATGGT
130 TAGGCACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
14551954 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACACGTTTTTCTATTTTTCATGATTTTTC
195 CCCTTAAGCCTTCACGTGAAG-TTCATGGCAAGACGACTCG-TTTTCTATTTTTCAAGATTTTTA
* **
14552019 AAACTTTTTACGGTTCGAGATTTTTTAAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGT
258 AAACTTTTTACGGTTCAAGATTTTTT-AAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
14552084 AGACGTGGTCCTTGTATTTTTGTTGTCATGCACAAAAAAAAACAGGTAAAAACTTGAAGTGTACA
322 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTTGAAGTGTACA
*
14552149 AGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
387 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14552214 CCTGTAACATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGG
452 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
14552279 CCAATATAAGGCCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
517 CCAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* * * * * ** ** *
14552344 TCATCGGAACCCCAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCCACGATGGTGCCTTGGCGA
582 TCGTCGGAACCCCAATATCGTCGGTCAGGTTCTTCGGCGATGCTTCGGCGATGGTGCCCCGACGA
* * * * * *
14552409 AGAAAAATGCGACAGCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCGTCAGTCTGGTCT
647 AGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCC
14552474 G
712 G
* ** *
14552475 ATCATAGACTGGGAATAAACTCCGTATGCCTAAGCCAATTGATGAAACGA----GCGGGCGGGTG
1 ATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGGGCGGGCGGGTG
* * * * * * *
14552536 GGCACTCCACCAACCAAAAAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATATGGTGGTAGGTGGGTTT
* *
14552601 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTCTGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * *
14552666 CCTTAAGGCTTCACGTGAAGTTTATGGCAAGACGACTCATTTTCTATTTTTTAAGATTTTCAAAA
196 CCTTAAGCCTTCACGTGAAGTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTAAAA
* * * *
14552731 GTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTAGTAGAA
261 CTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
14552796 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAATTTGAAGTGTAGAAGAT
326 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTTGAAGTGTACAAGAT
14552861 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
391 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
14552926 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCCAA
456 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
14552991 TATAAGGTCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTGATCGT
521 TATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGT
*
14553056 CGGAACCCCAAT-TCGTCGGTCAGGTTCTTCGGCGACGCTTCGGCGATGGT-CCCCGACGAAGAA
586 CGGAACCCCAATATCGTCGGTCAGGTTCTTCGGCGATGCTTCGGCGATGGTGCCCCGACGAAGAA
* * * ***
14553119 AAATACGGCACCAGCACATGCTCGAGCCCAGTATGTGCTACCGCAACCCTTGGTCCAATCCG
651 AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCG
* * * * *
14553181 ATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAAGCAACAAAACGAGCGGGCGGGCGGGTG
1 ATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGGGCGGGCGGGTG
* *
14553246 GGCACTACGCCAGCCAGAGAGACGGGATGCGCGAGCCATGGATAGATATGGTGGTAGGTGGGTTT
66 GGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATATGGTGGTAGGTGGGTTT
* * * *
14553311 AGGCACATCTTCATATTTGTGCGTGCCAATTCCATTTTTATGGCTTTTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
14553376 CTTTAAGCCTTCACGTGAAGTGTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGT-TCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTAAA
* * **
14553441 ACTTTTTGCGGTTCAAGATTTTTTAAACTTTTTTCAGAAGGAGTTTTCTCCCCAAACTTGGTAGA
260 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
14553506 CGTGATCCTTGTATTTTTGTTGGCCTGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGA
325 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTTGAAGTGTACAAGA
*
14553571 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCT
390 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * *
14553636 GTAAAATCTCAAATTCTCTTTAAGGGGGTGCGACTTCTC-AGGGTTTGATGAGGGATAGGGGGCC
455 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCC
*
14553700 AATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGAGCACACCCCCCCCGGCCCCCCCG
519 AATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGG-CCCCCCG
* * * * *
14553765 ATCGCCGGAACCCCAATGTTGTCAGTCAGGTTCTTCGACGATGCTTCGGCGATGGTGCCCCGACG
581 ATCGTCGGAACCCCAATATCGTCGGTCAGGTTCTTCGGCGATGCTTCGGCGATGGTGCCCCGACG
* * *
14553830 AAGAAAAATGCAGCACCAGCACATGTTCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTC
646 AAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTC
14553895 CG
711 CG
* * * *
14553897 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAAACCACGAAACGAGC
1 ATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAAACGACGAAACGAGC
14553949 ATGCATCTCG
Statistics
Matches: 1312, Mismatches: 146, Indels: 27
0.88 0.10 0.02
Matches are distributed among these distances:
706 102 0.08
707 35 0.03
708 294 0.22
709 42 0.03
710 163 0.12
711 500 0.38
713 8 0.01
714 22 0.02
715 34 0.03
716 112 0.09
ACGTcount: A:0.27, C:0.23, G:0.24, T:0.27
Consensus pattern (712 bp):
ATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGGGCGGGCGGGTG
GGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATATGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTAAAA
CTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTTGAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGT
CGGAACCCCAATATCGTCGGTCAGGTTCTTCGGCGATGCTTCGGCGATGGTGCCCCGACGAAGAA
AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCTGGTCCG
Found at i:14555152 original size:20 final size:20
Alignment explanation
Indices: 14555127--14555166 Score: 80
Period size: 20 Copynumber: 2.0 Consensus size: 20
14555117 CAATGGTCCC
14555127 TTAAGCCTTCACATGAAGTT
1 TTAAGCCTTCACATGAAGTT
14555147 TTAAGCCTTCACATGAAGTT
1 TTAAGCCTTCACATGAAGTT
14555167 CTATTTTTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.30, C:0.20, G:0.15, T:0.35
Consensus pattern (20 bp):
TTAAGCCTTCACATGAAGTT
Found at i:14555676 original size:26 final size:26
Alignment explanation
Indices: 14555647--14555696 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14555637 GTTTGATCTC
*
14555647 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTAGGAATGAACTCCGTATGCTT
*
14555673 AGACTAGGAATGAACTCTGTATGC
1 AGACTAGGAATGAACTCCGTATGC
14555697 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (26 bp):
AGACTAGGAATGAACTCCGTATGCTT
Found at i:14555700 original size:896 final size:902
Alignment explanation
Indices: 14553956--14555721 Score: 2507
Period size: 896 Copynumber: 2.0 Consensus size: 902
14553946 AGCATGCATC
* *
14553956 TCGGGGATCGGCCGGGTCCCCCTTTACGTGCTGTCGATCCTGCTACCGCAACCCTCGGTCTGATC
1 TCGGGGATCGGCCGGGTCCCCCTTTACGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGATC
* *
14554021 TGATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAATCGAGAAAACGAGCAGGCGGGCAGA
66 TGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGAGAAAACGAGCAGGCGCGCAGA
*
14554086 CGGGCTGGCAAGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGT
131 CAGGCTGG--AGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGT
**
14554151 AGGTGGGTTTAGGCACATCTTCTTATTTCTGGGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
194 AGGTGGGTTTAGGCACATCTTCTTATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * **
14554216 TACAATGGTCCCCTTAAGCCTTCACGTGAAGTTTCATGGGAAGCCGACTCGTTTTCTATTTTTCA
259 TACAATGGTCCCCTTAAGCCTTCACATGAAGTTT-AT--GAAGCCCACTCGAGTTCTATTTTTCA
* * *
14554281 CGATTTTCAAAATTTTTTACGGTATGAGATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGCTCCA
321 CGATTTTCAAAACTTTTTACGGTATGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * *
14554346 AATTTGGTAGACGTGATCTTTGTATTTTTTTTGGCACGCACAAAAGAATTCAGCTAAAAACTCGA
386 AACTTGGTAGACATGATCCTTGTATTTTTGTTGGCACGCACAAAAGAATTCAGCTAAAAACTCGA
* * *
14554411 AGTGTACGAGATTTTGTGACCATTTGAAAAAAGTGTCCCTACTTTAGACACTTTAATGGCTACTG
451 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTG
* *
14554476 GCAGCAAACCTCTAAAATCTTAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGCGG
516 GCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
14554541 GATAGTGGGCCAATATAAGGCCCAAGTACCAGCACCCATTGCAAATCATGAGCGCACACCCCCCG
581 GATAGTGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCAAATCATGAGCGCACACCCCCCG
* ** * * * *
14554606 GCCCCCCCGTCGCCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATACTCTAGCGATGGTG
646 ACCCCCCAATCGCCAGAACCCCAATACCGCCGATCAGGTTCTCCGGCGATACTCGAGCGATGGAG
14554671 CCCCCGCAAAGAAAAATGTGGCACCAGCAAACGCCCGAGCCCAACATGTGCTGCCACAACCCTCG
711 CCCCCGCAAAGAAAAATGTGGCACCAGCAAACGCCCGAGCCCAACATGTGCTGCCACAACCCTCG
* * * * *
14554736 GTTCGATCCGATCTTAGACTGAGAATGAACTCTATATGCTTAGACCGGGAATGAACTCCGTCTGC
776 GTCCGATCCGATCTCAGACTGAGAATGAACTCCATATGCTTAGACCAGGAATGAACTCCGTATGC
*
14554801 CTAAGTCAACCCATGAAATGAGCGTGCAGGTACTTCGTCGGCCAGAGGGGCTGAAGCGCAAG
841 CTAAGTCAACCCATGAAACGAGCGTGCAGGTACTTCGTCGGCCAGAGGGGCTGAAGCGCAAG
* *
14554863 TCGGGGATCGGCCGGGTCCCCCTTTACGTGCTG-CTGATCCTGCTACCGCAACCCTCATTCCGGT
1 TCGGGGATCGGCCGGGTCCCCCTTTACGTGCTGTC-GATCCTGCTACCGCAACCCTCAGTCCGAT
*
14554927 CTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCGAA-CTGATG-AAACGAGC-GG-GCG-
65 CTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATC-GA-GAAAACGAGCAGGCGCGC
*
14554987 AG-CAGGC-GG-GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
128 AGACAGGCTGGAGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGG
*
14555049 TAGGTGGGTTTAGGCACATCTT-TATATTTCTACGTGCTAATGCCATTTTTATGGCTTGTAAATT
193 TAGGTGGGTTTAGGCACATCTTCT-TATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATT
14555113 CATACAATGGT-CCCTTAAGCCTTCACATGAAGTTT-T-AAGCCTTCACAT-GAAGTTCTATTTT
257 CATACAATGGTCCCCTTAAGCCTTCACATGAAGTTTATGAAGCC--CAC-TCG-AGTTCTATTTT
* * *
14555174 TCATGATTTTCAAAACTTTTTGCGGT-TCGAGATTTTTTAAAAATTTTTTTGGAAGGAGTTTTGG
318 TCACGATTTTCAAAACTTTTTACGGTAT-GAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGG
*
14555238 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAA-ACATTCAGCTAAAA
381 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCACGCACAAAAGA-ATTCAGCTAAAA
* *
14555302 ACTTGAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTCAGACACTTTAATG
445 ACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATG
* * * * *
14555366 GCTATTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GTGGGTGTGAGTTCTCGTGGTTT
509 GCTACTGGCAGCAAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTT
* * *
14555430 GATGAGGGATAG-GGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCAC
574 GATGAGGGATAGTGG-GCCAATATAAGGCCCAAGTACCAGCACCCATCGCAAATCATGAGCGCAC
* * * *
14555494 ACCCCCCGACCCCCCAATCGCC-GAAAGCCCAATACCGTCGATCAGGTTCTCCGGTGATGCTCCG
638 ACCCCCCGACCCCCCAATCGCCAG-AACCCCAATACCGCCGATCAGGTTCTCCGGCGATACT-CG
* * * * *
14555558 A-CGATGGAG-CCCCGACGAAGAGAAATGTGGCACCAGCACATG-CCGAAGCCCAGCATGTGCTG
701 AGCGATGGAGCCCCCG-CAAAGAAAAATGTGGCACCAGCAAACGCCCG-AGCCCAACATGTGCTG
* * ** * * *
14555620 CCGCAACCCTCGGTCCGGTTTGATCTCAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATG
764 CCACAACCCTCGGTCCGATCCGATCTCAGACTGAGAATGAACTCCATATGCTTAGACCAGGAATG
* *
14555685 AACTCTGTATGCCTAAGTCAACCCATGGAACGAGCGT
829 AACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGT
14555722 ACGGGCGCTC
Statistics
Matches: 768, Mismatches: 74, Indels: 45
0.87 0.08 0.05
Matches are distributed among these distances:
893 5 0.01
895 15 0.02
896 304 0.40
897 137 0.18
898 63 0.08
899 122 0.16
902 2 0.00
903 4 0.01
904 2 0.00
905 2 0.00
906 4 0.01
907 107 0.14
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
TCGGGGATCGGCCGGGTCCCCCTTTACGTGCTGTCGATCCTGCTACCGCAACCCTCAGTCCGATC
TGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGAGAAAACGAGCAGGCGCGCAGA
CAGGCTGGAGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAG
GTGGGTTTAGGCACATCTTCTTATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCCTTAAGCCTTCACATGAAGTTTATGAAGCCCACTCGAGTTCTATTTTTCACGATT
TTCAAAACTTTTTACGGTATGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACATGATCCTTGTATTTTTGTTGGCACGCACAAAAGAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCACTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTCTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
TGGGCCAATATAAGGCCCAAGTACCAGCACCCATCGCAAATCATGAGCGCACACCCCCCGACCCC
CCAATCGCCAGAACCCCAATACCGCCGATCAGGTTCTCCGGCGATACTCGAGCGATGGAGCCCCC
GCAAAGAAAAATGTGGCACCAGCAAACGCCCGAGCCCAACATGTGCTGCCACAACCCTCGGTCCG
ATCCGATCTCAGACTGAGAATGAACTCCATATGCTTAGACCAGGAATGAACTCCGTATGCCTAAG
TCAACCCATGAAACGAGCGTGCAGGTACTTCGTCGGCCAGAGGGGCTGAAGCGCAAG
Found at i:14556405 original size:26 final size:26
Alignment explanation
Indices: 14556369--14556421 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14556359 CTTGTTCGAT
*
14556369 CTTAGACTGGGAATGGACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14556395 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14556421 C
1 C
14556422 CAAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14557303 original size:26 final size:26
Alignment explanation
Indices: 14557274--14557324 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14557264 CCGGTCCCAT
14557274 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTGGGAATGAACTCCGTATA
14557300 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14557325 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATA
Found at i:14557491 original size:905 final size:896
Alignment explanation
Indices: 14555748--14557844 Score: 2977
Period size: 905 Copynumber: 2.3 Consensus size: 896
14555738 ACGGGATATG
* *
14555748 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTACGTGCCAATG
1 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
14555813 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
66 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
** * * * *
14555878 GACGACTCGTTTTCTATTTTTCA-CGATTTTCAAAATGTTTTTCCGTTCGGGATTTTTTAAAATT
131 GACGACTCGTTTTCTATTTTTCATAAATTTTCAAACT-TTTTACGGTTCGAGATTTTTTAAAATT
14555942 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
195 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
14556007 AAAAAATTCAGCTAAGAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
260 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14556072 TTCGGACACTTTAATGGCTACTGGCATCAAACCCTTAAAATCTCAAATGCTCTTTAAGGGGTTGT
325 TTCGGACACTTTAATGGCTACTGGCAGCAAACCCTTAAAATCTCAAATGCTCTTTAAGGGGCTGT
** * *
14556137 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCTAGTATAAGGGCCAAGTACCAGCACCCATCGCA
390 GAGTTCTCAAGGTTTGATGAAAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * ** *
14556202 CATCATATGCTTGCAGCCCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGTCGCCGGTCAGGTT
455 CATCATATGCGTACACCCCCCCCGACCCCCCTGATCGTCCAAACCCCAATGCCGCCGGTCAGGTT
* **
14556267 CTCCAGCGATGCTCCGACGATGGTGCCATAGCGAAGAAAAATGTGGCACCAGCACATGCCCGAGC
520 CTCCAGCGATGCTCCGACGATGGTGCCACAGCGAAGAAAAATACGGCACCAGCACATGCCCGAGC
* * ** * * * *
14556332 CCAGCATGTGCTGCCGCAACCCTTGGTCTTGTTCGATCTTAGACTGGGAATGGACTCCATATGCT
585 CCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCCATCTTAGACTGGGAATGAACTCCATATACT
*** * **
14556397 TAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCATGGAACGAACGTGAGGGCGCTCAGTCG
650 TAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAACATGAGGGCGCTCAACCG
* * * *
14556462 GCCAGAGGGGCGGGATGCGTAAGCCGAGGATCGATCGGGTCCCTCTCTGCATGCTGTCGATGCTG
715 GCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCTCTCTACATGCTGTCGATCCTA
*
14556527 CTATCGCAACCCTCAATCCGGTTTGATCTCAGACTGGGAATGAACTCCGTATACCTAAGCCAATC
780 CTATCGCAACCCTCAATCCGGTTCGATCTCAGACTGGGAATGAACTCCGTATACCTAAGCCAATC
*
14556592 GACGAAACGAGCGGGCGGGTGGGCGGGCGGGCACAACGCCGACCAGAGAGACGAGATGCA
845 GACGAAACGA----GCAGGT----GGGCGGGCACAACGCCGACCAGAGAGACGAGATGCA
*
14556652 CAAGCCGTGGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
1 CAAGCCGT-GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAAT
* * * * *
14556717 GCTATTTTTATGGCTTTTAAATTCATGCAATGGTCACTTAAGCCTTCGCGTGAAGTTTCATGGCA
65 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
14556782 AGACGACTCGTTTTCTATTTTTCATAAATTTTGAAACTTTTTACGGTTTGAGATTTTTAAAAATT
130 AGACGACTCGTTTTCTATTTTTCATAAATTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATT
* * * *
14556847 TTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTAGATGTGATCCTTTTATTTTTGTTGGCATGCAC
195 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
14556912 AAAAAATTCAGCTAAAAACTCGAAGTGTGCAAGATTTTGTGATCATTTG-AAAAAGTGTCCCCAT
260 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
** *
14556976 TTTTGACACTTTAATGGCTACTGGCAGCGAA-CCTATAAAATCTCAAATGCTCTTTAAGGGGCTG
325 TTCGGACACTTTAATGGCTACTGGCAGCAAACCCT-TAAAATCTCAAATGCTCTTTAAGGGGCTG
** * *
14557040 TGAGTTCTTGAGGTTTGATGAAAGATAGGGGTCCAATATAAGGGCCAAGTACCAGCACCCATTGC
389 TGAGTTCTCAAGGTTTGATGAAAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * *
14557105 ACATCATGTGCGTACACCCCCCCTCGACCGCCCC-GATCGTCCAAACCCCAATGCCGTCGGTTAG
454 ACATCATATGCGTACACCCCCCC-CGACC-CCCCTGATCGTCCAAACCCCAATGCCGCCGGTCAG
* * * * * *
14557169 GTTCTTCGGTGATGCTCCGACGATGGCTTCC-CGGTGAAGAAAAATACGGCACCAGCACATGCCC
517 GTTCTCCAGCGATGCTCCGACGATGG-TGCCACAGCGAAGAAAAATACGGCACCAGCACATGCCC
*
14557233 GAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCCATCTTAGACTGGGAATGAACTCCGTA
581 GAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCCCATCTTAGACTGGGAATGAACTCCATA
* * *
14557298 TACTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCAT-ACGGGCGCTC
646 TACTTAGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAACATGA-GGGCGCTC
* *
14557362 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGTCGGGTCCC-CTTTTACATGCTGTCG
710 AACCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCTC-TCTACATGCTGTCG
* * * * * * * *
14557426 ATCCTACTGTCGTAACCCTCGGA-CCGGTTCGATGTTAGAGTGGGAATGAACTTCGTATGCCTAA
774 ATCCTACTATCGCAACCCTC-AATCCGGTTCGATCTCAGACTGGGAATGAACTCCGTATACCTAA
* * * * *
14557490 GCCAATCGACGAAACGAGCAGGTGGGCGGGCACTACGTCGACTAGAGAGACGGGATGCT
838 GCCAATCGACGAAACGAGCAGGTGGGCGGGCACAACGCCGACCAGAGAGACGAGATGCA
* *
14557549 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGACATCTTCATATTTCAGCGTGCCAATG
1 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
*
14557614 CCATTTTTATGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
66 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * * * * * *
14557679 GACTACTCCTTTTTTATTTTTTTATGAGTTTTTAAACTTTTTGCGGTTCAAGATTTTTTAACATT
131 GACGACTCGTTTTCTA-TTTTTCATAAATTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATT
14557744 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT
195 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-
* *
14557809 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
259 CAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
14557845 ACTTTAATGG
Statistics
Matches: 1059, Mismatches: 123, Indels: 28
0.88 0.10 0.02
Matches are distributed among these distances:
896 126 0.12
897 138 0.13
898 33 0.03
901 5 0.00
903 3 0.00
904 156 0.15
905 581 0.55
906 17 0.02
ACGTcount: A:0.25, C:0.23, G:0.24, T:0.28
Consensus pattern (896 bp):
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
GACGACTCGTTTTCTATTTTTCATAAATTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCGGACACTTTAATGGCTACTGGCAGCAAACCCTTAAAATCTCAAATGCTCTTTAAGGGGCTGTG
AGTTCTCAAGGTTTGATGAAAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATATGCGTACACCCCCCCCGACCCCCCTGATCGTCCAAACCCCAATGCCGCCGGTCAGGTTC
TCCAGCGATGCTCCGACGATGGTGCCACAGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
CAGCATGTGCTACCGCAACCCTCGGTCCGGTCCCATCTTAGACTGGGAATGAACTCCATATACTT
AGACTGGGAATGAACTCCGTATGCCAAAGTCAACCCACAAAACGAACATGAGGGCGCTCAACCGG
CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCTCTCTACATGCTGTCGATCCTAC
TATCGCAACCCTCAATCCGGTTCGATCTCAGACTGGGAATGAACTCCGTATACCTAAGCCAATCG
ACGAAACGAGCAGGTGGGCGGGCACAACGCCGACCAGAGAGACGAGATGCA
Found at i:14560403 original size:718 final size:717
Alignment explanation
Indices: 14559021--14560425 Score: 2201
Period size: 718 Copynumber: 2.0 Consensus size: 717
14559011 TTGACGAAAT
* *
14559021 GGGCGGGCGGGCACTACGTCAGCAAGAGAGACGGGATGCTCAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGAGCGGGCACTACGTCAGCAAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
14559086 GGTGGGTTTAGGGACATCTTCATATTTCTGTGTGCCAACGCCATTTTTATGCTTGTAAATTCAAA
66 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAACGCCATTTTTATGCTTGTAAATTCAAA
* *
14559151 CAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTATGA
131 CAATGGACCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
** * *
14559216 GTTTTTAAACTTTTTGGGGTTCGGGATTTTTTAACATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
196 GTTTTTAAACTTTTTACGGTTCGAGATTTTTTAACATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
** *
14559281 GTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
261 GTGGTAGACGTGATCCTTACATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGT
*
14559346 GTACAAGATTTTGTGACCATTTGAAAAAAAGTCCCCATTTCAGATACTTTAATGGCTACTGGAAG
326 GTACAAGATTTTGTGACCATTTGAAAAAAAGTCCCCATTTCAGACACTTTAATGGCTACTGGAAG
* * *
14559411 CAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
391 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTCAAGGTTTGATGAGGGATAG
* * *
14559476 GGGGCCAATATAAGGGCTAAGTACTAGCACCCACCGCACATAATGTGCGCACACCCCCTCCCGCC
456 GGGGCCAATATAAGGGCCAAGTACTAGCACCCACCACACATAATGTGCGCACACCCCCT-CCGAC
* * ** *
14559541 CCCCCGATCGCCAGAACCCTAATGTCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCC
520 CCCCCGATCGCCAGAACCCTAATGCCGCCAATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCC
* * * *
14559606 CCGGTGAAGAAAAATGCGACACCTGCACATGCCCGAGCCCAGCATGTCTTGCCGCAACCATCGGT
585 CCGGTGAAGAAAAATGCGACAACAGCACACGCCCGAGCCCAGCATGTCTTGCCACAACCATCGGT
** * *
14559671 CCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAACCGACGAAACGAGTGGGCG
650 CCGATCCAATCTTAGACTAGGAATGAACTCCATATGCCTCAGCCAACCGACGAAACGAGTGGGCG
14559736 GGC
715 GGC
* ** *
14559739 GGGCGAGCGGGCACTATGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
1 GGGCGAGCGGGCACTACGTCAGCAAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
14559804 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATTGCTTGTAAATTCAT
66 GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAACGCCATTTTTA-TGCTTGTAAATTCAA
* *
14559869 ACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCGTG
130 ACAATGGACCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
14559934 A-TTTTTGAAACTTTTTACGGTTCGAGATTTTTTGAA-ATTTTTTCGGAAGGAGTTTT-GCACCC
195 AGTTTTT-AAACTTTTTACGGTTCGAGATTTTTT-AACATTTTTTCGGAAGGAGTTTTGGC-CCC
*
14559996 AAACTTGGTAGACGTGATCCTTACATTTTTGTTGGCATGCACAAAAAAAAATCAGCTAAAAACTC
257 AAACGTGGTAGACGTGATCCTTACATTTTTGTTGGCATGCAC-AAAAAAAATCAGCTAAAAACTC
* *
14560061 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
321 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAA-AGTCCCCATTTCAGACACTTTAATGGCTAC
*
14560126 TGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTCAAGGTTTG-TGAG
385 TGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTCAAGGTTTGATGAG
* * * *
14560190 GGATAGGGGGCCAATATAAGGGCCAAGTCCTAGCACCCATCACACATCATGTTCGCACACCCCCT
450 GGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCACCACACATAATGTGCGCACACCCCCT
* *
14560255 -GGACCCCCCGATCGCCGGAACCCTAATGCCGCCAATCAGGTTCTCCGACGATGCTCCGGCGATG
515 CCGACCCCCCGATCGCCAGAACCCTAATGCCGCCAATCAGGTTCTCCGACGATGCTCCGGCGATG
*
14560319 GTGCCCTGGTGAAGAAAAATGCGACAACAGCACACGCCCGAGCCCAGCATGTGC-TGCCACAACC
580 GTGCCCCGGTGAAGAAAAATGCGACAACAGCACACGCCCGAGCCCAGCATGT-CTTGCCACAACC
* * *
14560383 CTCGGTCTGGTCCAATCTTAGACTAGGAATGAACTCCATATGC
644 ATCGGTCCGATCCAATCTTAGACTAGGAATGAACTCCATATGC
14560426 TTAGACTGGG
Statistics
Matches: 625, Mismatches: 55, Indels: 14
0.90 0.08 0.02
Matches are distributed among these distances:
718 261 0.42
719 161 0.26
720 119 0.19
721 84 0.13
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (717 bp):
GGGCGAGCGGGCACTACGTCAGCAAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAACGCCATTTTTATGCTTGTAAATTCAAA
CAATGGACCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
GTTTTTAAACTTTTTACGGTTCGAGATTTTTTAACATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
GTGGTAGACGTGATCCTTACATTTTTGTTGGCATGCACAAAAAAAATCAGCTAAAAACTCAAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAAGTCCCCATTTCAGACACTTTAATGGCTACTGGAAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTCAAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACTAGCACCCACCACACATAATGTGCGCACACCCCCTCCGACC
CCCCGATCGCCAGAACCCTAATGCCGCCAATCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCC
CGGTGAAGAAAAATGCGACAACAGCACACGCCCGAGCCCAGCATGTCTTGCCACAACCATCGGTC
CGATCCAATCTTAGACTAGGAATGAACTCCATATGCCTCAGCCAACCGACGAAACGAGTGGGCGG
GC
Found at i:14560428 original size:26 final size:26
Alignment explanation
Indices: 14560399--14560451 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14560389 CTGGTCCAAT
14560399 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14560425 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14560451 C
1 C
14560452 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14562038 original size:719 final size:720
Alignment explanation
Indices: 14560555--14562074 Score: 2268
Period size: 719 Copynumber: 2.1 Consensus size: 720
14560545 CTGCCAATCC
* * *
14560555 TGCTACCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATCCCTAAGCCAA
1 TGCTACCGCAACCCTTGGTCTGGTCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14560620 CCGACGAAATGAGCGGGCAGGCAGGCGGGTGGGCGAGCACAACACCGGCCAGAGAGACAGGATGC
66 CCGACGAAACGAGCAGGCAGGCA-GCGGGCGAGCGAGCACAACACCGGCCAGAGAGACAGGATGC
* **
14560685 ACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATTCCAAT
130 ACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAGGCCAAT
* * *
14560750 GCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCC
195 GCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCA
* * *
14560815 AGATGAATCATTTTCTATTTTTCACGATTTTTGAAATTTTTACGGTTCGAGATTTTTTAAAATTT
260 AGACGAATCATTTTCTACTTTTCACGATTTTCGAAATTTTTACGGTTCGAGATTTTTTAAAATTT
*
14560880 TTTCGGAAGAGTTTTGGCCCCAAATTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAA
325 TTTCGGAAGAGTTTTGGCCCCAAATTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14560945 AACATTCAGCTAAAAACTCAATGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTT
390 AAAATTCAGCTAAAAACTCAATCTGTACAAGATTTTGTGACCATCTGAAAAAAATGTCCCCATTT
* *
14561010 CAGATACTTTAATGGCTACTGAAAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGA
455 CAGACACTTTAATGGCTACTGAAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
14561075 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCACCGCACA
520 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACA
* *
14561140 TCATGTGCGGACACCCCTTCCCGGCCCCCCCGATCACCAGAACCCTAATGCCGCCGGTCAGGTTC
585 TCATGTGCGCACACCCC-TCCCAGCCCCCCCGATCACCAGAACCCTAATGCCGCCGGTCAGGTTC
**
14561205 TCCAACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCTGCACATGCCCGAACC
649 TCCAACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGAACC
*
14561270 CAGCATG
714 CAACATG
* * * *
14561277 TGCTACCGCAACCATCGGTCTGATC-CGATCTTAGACTGGGAATGAACTCCGTATGCCTCAGCCA
1 TGCTACCGCAACCCTTGGTCTGGTCTC-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *** *
14561341 ACCGGCGAAACGATGCAGGC-GG-A-CGGGCGAGCGGGCACTATGTCGGCCAGAGAGACGGGATG
65 ACCGACGAAACGA-GCAGGCAGGCAGCGGGCGAGCGAGCACAACACCGGCCAGAGAGACAGGATG
* * **
14561403 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGGGCCAA
129 CACAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAGGCCAA
* *
14561468 TGCCATTTTTATGGCTTGTAAATTCATACACTGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGC
194 TGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGC
* * * *
14561533 AAGACGACTCGTTTTCTACTTTTCATGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTGAAAT
259 AAGACGAATCATTTTCTACTTTTCACGATTTTCGAAA-TTTTTACGGTTCGAGATTTTTTAAAAT
* *
14561598 TTTTTCGGAAGAAGTTTT-GCACCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGC
323 TTTTTCGGAAG-AGTTTTGGC-CCCAAA-TTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
*
14561662 ACAAAAAAAATT-AGCTAAAAACTCGAA-CTGTACAAGATTTTGTGACCATCTGAAAAAAGTGTC
385 AC-AAAAAAATTCAGCTAAAAACTC-AATCTGTACAAGATTTTGTGACCATCTGAAAAAAATGTC
**
14561725 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
448 CCCATTTCAGACACTTTAATGGCTACTGAAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
14561790 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCA
513 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * *
14561855 TCGCACATCATGTGCGCACACCCC-CCCAG-CCCCCCGATCGCCGGAAGCCC-AATGCCGCCGGT
578 CCGCACATCATGTGCGCACACCCCTCCCAGCCCCCCCGATCACCAGAA-CCCTAATGCCGCCGGT
* * *
14561917 CAGGTTCTCCGATGATGCTCCGACGATGTTGCCCCGGTGAAGAAAAATACGGCACCAACACATGC
642 CAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAACACATGC
* *
14561982 CCGAGCCCAACGTG
707 CCGAACCCAACATG
* *
14561996 TGCTACCGCAACCCTTGGTCCGGTCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
1 TGCTACCGCAACCCTTGGTCTGGTCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* *
14562061 CCCACGAAATGAGC
66 CCGACGAAACGAGC
14562075 TTGTGGGCAC
Statistics
Matches: 716, Mismatches: 72, Indels: 24
0.88 0.09 0.03
Matches are distributed among these distances:
718 2 0.00
719 344 0.48
720 47 0.07
721 13 0.02
722 295 0.41
723 15 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (720 bp):
TGCTACCGCAACCCTTGGTCTGGTCTCATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCAGGCAGGCAGCGGGCGAGCGAGCACAACACCGGCCAGAGAGACAGGATGCA
CAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAGGCCAATG
CCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACGTGAAGTTTCATGGCAA
GACGAATCATTTTCTACTTTTCACGATTTTCGAAATTTTTACGGTTCGAGATTTTTTAAAATTTT
TTCGGAAGAGTTTTGGCCCCAAATTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
AAATTCAGCTAAAAACTCAATCTGTACAAGATTTTGTGACCATCTGAAAAAAATGTCCCCATTTC
AGACACTTTAATGGCTACTGAAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACAT
CATGTGCGCACACCCCTCCCAGCCCCCCCGATCACCAGAACCCTAATGCCGCCGGTCAGGTTCTC
CAACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAACACATGCCCGAACCCA
ACATG
Found at i:14564532 original size:719 final size:720
Alignment explanation
Indices: 14562163--14564906 Score: 4121
Period size: 716 Copynumber: 3.8 Consensus size: 720
14562153 CCTGCTGCTG
* * * * * *
14562163 CAACCCTCAGTCTGGTCCAATATTACACTGGGAATGAACTCCGTTTGCCTAAGCCAATCGACGAA
1 CAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* * ** * *
14562228 ACGAGCGGGCGGGTGGGCGGGCGGGCACTACATCGGCCAGAGAGACCGGATGCGCAAGCTGTGGA
66 ACGAGCGGGCGGGTTGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* * * **
14562293 TCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTTATATTTCCACATGCCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
*
14562358 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCCATGGCAAGACAACTCGT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT-CATGGCAAGACGACTCGT
* *
14562423 TTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAGA-TTTTTTCGAAA
260 TTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTCAA-ATTTTTTTTG-AA
* *
14562486 GGAGTTTTGGCCCCAAACTTGGTAGACGTGGTCCTTGTATTTTTTTTGGCATGCACAAAA-AAAT
323 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAA-
* * * * *
14562550 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGT-ACCTATTTAAAAAAAGTATCCCCATTTTCAG
387 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC-ATCTGAATAAAGTGTCCCCA-TTTCAA
* * *
14562614 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGAGTGTGAGTT
450 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
** * *
14562679 CTTGAGGTTTAATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
515 CTCAAGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * * *
14562744 TGTGCGCACACCCCCCCTCGGCCCCCACGATCGCCGAAACCCCAATACCGTCGTTTAAGTTCTCC
580 TGTGCGCACACCCCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * * * * *
14562809 GACGATGCT-TCGACGATGGTGCCCCGGTGAAGAAAAATGTGACACCAGCATAAGCCTGAGCCGA
644 GGCGATGCTCT-GACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
*
14562873 GCATGTGCTGCCA
708 GCATGTGCTACCA
* * *
14562886 TAACCCTCGGTC-CAGCCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 CAACCCTCGGTCTGA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
14562950 AACAAGCGGGCGGGCTGGCGGGAGGGCACTACGCTGGCCAGAGAGACGGGTTGCACAA-CCGTGG
65 AACGAGCGGGCGGGTTGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
14563014 ATCGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTTTGCATGCTAATGCCATTTTTTA
130 ATCGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTA
** * * * * *
14563079 CAGTTTGTAAATTCATAAAATGGTCCCTTAAGCGTTCATGTGAAGTTTCATGGTAAGACGACTCG
194 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
14563144 TTTTCTATTTTTCACAATTTTTGAAACTTTTTGCAGTTTGGGA-TTTTTCAAATTTTTTTTGAAG
259 TTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTCAAATTTTTTTTGAAG
*
14563208 GAGTTTTGGCTCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAATC
324 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAATC
* *
14563273 AGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATCTGAATAAAGTGTCCCCATTTCAGACAC
389 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATCTGAATAAAGTGTCCCCATTTCAAACAC
* *
14563338 TTTAATGGCTGCTGGCAGCAAAGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
454 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA
14563403 AGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
519 AGGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* *
14563468 CG--CACGCCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
584 CGCACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
* *
14563530 TGCTCCGACGATGGTGCCTCGGA-GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
649 TGCTCTGACGATGGTGCC-CCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
14563594 TGCTACCA
713 TGCTACCA
* * *
14563602 CAACCCTCGGT-TCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
1 CAACCCTCGGTCT-GATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * ** * * *
14563666 AATGAGCGGGCGGTTTGTTGGGAGGGCACTGCGCCGGCCAGAGAGACTGGATGCGCAAGTCGTGG
65 AACGAGCGGGCGGGTTGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGG
* *
14563731 ATTGATAGGGTGGTAGGTGGGTCTAGGAACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
130 ATCGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
14563796 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
195 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
14563861 TTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTCAAATTTTTTTTGAAGG
260 TTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTCAAATTTTTTTTGAAGG
*
14563926 ATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAATCA
325 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAATCA
*
14563991 GCT-AAAACTTGAAGTGTACAAGATTTTGTGACCATCTGAATAAAGTGTCCCCATTTCAAACACT
390 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATCTGAATAAAGTGTCCCCATTTCAAACACT
*
14564055 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTCAA
455 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
* * *
14564120 GGTTTGATGGGGGATAGGGGGCCAATATAAGGGCTAAGTACTAGCACCCATTGCACATCATGTGC
520 GGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
* * * *
14564185 GCACGCCCCCCCCGGCCCCCCCGATCGTTGGAACTCCGATGCCGTCGGTCAGGTTCTCCGGCGAT
585 GCACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
*
14564250 GCTCTGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTG
650 GCTCTGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*
14564315 CTACCG
715 CTACCA
*
14564321 CAACCCTCGGTCTGATCCAATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
1 CAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
* *
14564386 ATGAGCGGGCGGGTTGGCGGGAGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCGTGGA
66 ACGAGCGGGCGGGTTGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
* *
14564451 TCGATAGGGTGGTAGGTGGGTCTAGGCACATCTTTATATTTTTGCATGCCAATGCCATTTTTATG
131 TCGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
* * **
14564516 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGCAAGATTACTCGTT
196 GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
*
14564581 TTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTCAAATTTTTTTTGAAGGA
261 TTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTCAAATTTTTTTTGAAGGA
* * *
14564646 TTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTATTGGCATGCACAAAACAAATCAG
326 GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAATCAG
14564711 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATCTGAATAAAGTGTCCCCATTTCAAACACTT
391 CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATCTGAATAAAGTGTCCCCATTTCAAACACTT
* * * *
14564776 TATGTGGCTACAGGCAGCAAACCTGTAAATTCT-TAA-GCTCTTTAA-GGGGTGTGAGTT-TCAA
456 TA-ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAA
*
14564837 -GTTTGAT-GGGGATA-GGGGCCAATATAAGGGCCAAGTACCAGTA-CCATCGC-CATCATGTGC
520 GGTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
14564897 GGCACACCCC
585 -GCACACCCC
14564907 GCGGCCCCCT
Statistics
Matches: 1844, Mismatches: 157, Indels: 50
0.90 0.08 0.02
Matches are distributed among these distances:
712 10 0.01
713 14 0.01
714 26 0.01
715 7 0.00
716 497 0.27
717 156 0.08
718 33 0.02
719 486 0.26
720 199 0.11
721 140 0.08
722 126 0.07
723 150 0.08
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.28
Consensus pattern (720 bp):
CAACCCTCGGTCTGATCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGTTGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGA
TCGATAGGGTGGTAGGTGGGTCTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATG
GCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTCAAATTTTTTTTGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAAATCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATCTGAATAAAGTGTCCCCATTTCAAACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAG
GTTTGATGGGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
CTCTGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TACCA
Found at i:14565946 original size:25 final size:26
Alignment explanation
Indices: 14565896--14565947 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14565886 CTGGTCCGAT
*
14565896 CTTAGACTAGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
14565922 CTTAGACTAGGAATG-ACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14565947 C
1 C
14565948 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 9 0.38
26 15 0.62
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14567607 original size:26 final size:26
Alignment explanation
Indices: 14567569--14567621 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14567559 CTGGTCCGAT
14567569 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
14567595 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
14567621 C
1 C
14567622 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:14568503 original size:26 final size:26
Alignment explanation
Indices: 14568474--14568524 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14568464 GGTCTGATCA
14568474 TAGACTAAGAATGAACTCCGTATGCT
1 TAGACTAAGAATGAACTCCGTATGCT
** *
14568500 TAGACTGGGAATGAACTTCGTATGC
1 TAGACTAAGAATGAACTCCGTATGC
14568525 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (26 bp):
TAGACTAAGAATGAACTCCGTATGCT
Found at i:14568776 original size:185 final size:185
Alignment explanation
Indices: 14568443--14568871 Score: 585
Period size: 185 Copynumber: 2.3 Consensus size: 185
14568433 GCCCAGCATG
* * *
14568443 TGCTGTTGCAACCCTCGGTCCGGTCTGATCATAGACTAAGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAGACTGG
* **
14568508 GAATGAACTTCGTATGCCTAAGTCAACCCTCGAAACGAGCGTGTGGGCGCTCAGCAGGCCAGAGG
66 GAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTACGGGCGCTCAGCAGGCCAGAGG
**
14568573 GGCAGGATGCGTAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTACTGCCGAT-C
131 GGCAGGATGCACAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTACTGCCGATAC
* * * * *
14568627 TTGCTGTCGCAATCCTCGATCCGGTCCGATCTTAGACTAAAAATGAACTCCATATGCCTAGACTG
1 -TGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAGACTG
* *
14568692 GGAATGAACTCCGTATGCCTAAGTCAACCCAT-GAAATGAGCGTACGGGCGTTCAGTCA-GCCAG
65 GGAATGAACTCCGTATGCCTAAGTCAACCC-TCGAAACGAGCGTACGGGCGCTCAG-CAGGCCAG
* * * *
14568755 AGGGGCCGGATGCACAAGCCGGGGATTGGCCAGGTCCCCCTCTGCGTGCTGTCGATAC
128 AGGGGCAGGATGCACAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTACTGCCGATAC
* * * * **
14568813 TACTGTCGTAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTA
1 TGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTAAGAATGAACTCCGTATGCCTA
14568872 AGCCAACCGA
Statistics
Matches: 211, Mismatches: 30, Indels: 6
0.85 0.12 0.02
Matches are distributed among these distances:
185 207 0.98
186 4 0.02
ACGTcount: A:0.22, C:0.27, G:0.28, T:0.23
Consensus pattern (185 bp):
TGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGACTAAGAATGAACTCCGTATGCCTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCTCGAAACGAGCGTACGGGCGCTCAGCAGGCCAGAGG
GGCAGGATGCACAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTACTGCCGATAC
Found at i:14571498 original size:713 final size:712
Alignment explanation
Indices: 14570074--14572241 Score: 2963
Period size: 713 Copynumber: 3.0 Consensus size: 712
14570064 TGCTCTGGTT
* * *
14570074 TGATCTTAGACTGGGAATAAACCCCGTTTGCCTAAGCCAACCGACGAAATGAGCAGGCGGACGGG
1 TGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCA----GACGGG
* * * * *
14570139 CGGGGGGGCACTACGTCGGCCAAAGAGATCGGATGTGCAAGCTGTGGATCGATAGGGTCGTAGGT
62 CGGGCGGGCACTACGCCGGCCAGAGAGA-CGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
14570204 GGGTTTAGGAACATATTCATATTTCTGCGTGCCAATGCCATTTTTATGGCATGTAAATTCATACA
126 GGGTTTAGGAACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
14570269 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATTGCAAAACGAC-CTGTTTTCTATTTTACATAAT
191 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-GTTTTCTATTTTTCATGAT
* *
14570333 TTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAAGATTTTTTGGCCCCAAAC
255 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA-TTTTTGGCCCCAAAC
* * * *
14570398 CTGGTAGACGTGATCCTTGCATTTTTTTTGGCAAGCACAAAGAAATTCAGCTAAAAACTCGGAGT
319 ATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA-AAATTCAGCTAAAAACTCGAAGT
14570463 GTACAAGATTTTATGACCATTT-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
383 GTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
14570527 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTATGAGTTCTCGAGGATTGATGAGGGATA
448 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
14570592 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-GACC
513 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCC
* * * **
14570656 CCCCGATCGTCGGAACCCTAATGCCGCCGGTCAAGTTTTTCCGGTGATGCTCCGGTGATGGTGCC
578 CCCCGATCGTCGGAACCCCAATGCCGCCGGT-AAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
** * * * *
14570721 CCGATGAAGAAAAATGTAGCCCCAGCATATGCCCGAGCCCAGCATGTGCTACCGTAGCCCTTGGT
642 CCGATGAAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTGGT
*
14570786 TCGGTC
707 CCGGTC
* **
14570792 TGATCTTAGACT-GGAATAAACTCCGTATGCCTTAGCCAGTCGACGAAACGAGCAGACGGGCGGG
1 TGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGG
* *
14570856 CGGGCACTACGCCGGCCAGAGAGACGGAATGTGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGA
66 CGGGCACTACGCCGGCCAGAGAGACGG-ATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
14570921 TTAGGCACATCTTCATATTTCTATGGGCCAATGCCATTTTTAGGGCTTGTAAATTCATACAATGG
130 TTAGGAACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
14570986 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTCACGATTTTCA
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* * * * * *
14571051 AAATTTTTTATGGTTTGGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTA
260 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACATGGTA
** *
14571116 GACGTGATCCTTGTATTTTAATTGGCATGCACAAAACAATTCAGGTAAAAACTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAA-AATTCAGCTAAAAACTCGAAGTGTACAA
14571181 GATATTT-TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
389 GAT-TTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
14571245 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
14571310 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGAGCGCACACCCCCCGGCCCCCCCG
518 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * *
14571375 ATCGTCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGCTCTGACGATGGTGGCCCGATG
583 ATCGTCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGATG
* * *
14571440 AAGTAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTC
648 AAGAAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTGGTCCGGTC
** * * * *
14571505 CAATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAACCTACGAAACGAGCGGGAGGCGGGC
1 TGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC---AGACGGGC
* * * * *
14571570 -GGTGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTG
63 GGGCGGGCACTACGCCGGCCAGAGAGAC-GGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** *
14571634 GGTTTAGGAACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTCATAAACTCATACAA
127 GGTTTAGGAACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
14571699 TGGTCCCTTACGCCTTTACGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCATGATTT
192 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
* * * * *
14571764 TTGAAACTTTTTGCGGCTCGAGATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCTCTAAACATG
257 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACATG
** * * *
14571829 GTAGGTGTGATCCTTGTATTTTTTTTGGGATGCATAAAAAAATTTAGCTAAAAACTCGAAGTGTA
322 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCA-CAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
14571894 CAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACTTTAAAGGCTACTGGCAGCA
386 CAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
14571959 AACTTGTAAAATCTCAAATGCTCTTTAAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGCGATAGG
451 AACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * * * *
14572024 GGGCCAATATATGGGCCAAGTGCTAGCACCGATCGCACATCATGTGCGCACATCCCCCCCGGCCC
515 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--CCCCCCGGCCC
* * *
14572089 CCCCGATCGTCGTAACCCCAATGCCGCC----A-G---TCAGGT--T-CTCCGGCGAT-GTGCCC
578 CCCCGATCGTCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGGTGATGCTCCGACGATGGTGCCC
*** * * **
14572142 CGA-GAAGAAAAATGTGGCACCAGCAGATGCCCGAGCGTC-GCATGTGCTACCGCAACCCTCAGT
643 CGATGAAGAAAAATACAGCACCAGCACATGCCCGAGC-CCAGCATGTGCTACCGCAACCCTTGGT
14572205 CCGGTC
707 CCGGTC
* *
14572211 TGATCTTAGACTGGGAATGAACTTCGTATGC
1 TGATCTTAGACTGGGAATAAACTCCGTATGC
14572242 TTAGACTGGG
Statistics
Matches: 1290, Mismatches: 143, Indels: 46
0.87 0.10 0.03
Matches are distributed among these distances:
706 83 0.06
707 9 0.01
708 8 0.01
709 1 0.00
711 6 0.00
712 92 0.07
713 476 0.37
714 70 0.05
715 4 0.00
716 360 0.28
717 132 0.10
718 12 0.01
719 37 0.03
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (712 bp):
TGATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGACGGGCGGG
CGGGCACTACGCCGGCCAGAGAGACGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGAACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACATGGTAG
ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
GTCGGAACCCCAATGCCGCCGGTAAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGATGAAG
AAAAATACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTGGTCCGGTC
Found at i:14573149 original size:26 final size:26
Alignment explanation
Indices: 14573120--14573170 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14573110 AGTCCGATCA
14573120 TAGACTGGGAATGAACTCCATATGCT
1 TAGACTGGGAATGAACTCCATATGCT
*
14573146 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCATATGC
14573171 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCT
Found at i:14573445 original size:903 final size:896
Alignment explanation
Indices: 14571480--14574076 Score: 3468
Period size: 903 Copynumber: 2.9 Consensus size: 896
14571470 GCCCAGCATG
* * * * *
14571480 TGCTGCCGCAACCCTTGGTCCGGTCCAATCTTATACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAAACCTCGGTCTGGTCCAATCTTATACAGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14571545 CCTACGAAACGAGCGGG-AGGCGGGC-GGTGGGCACTATGCTGGCCAGAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCACGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
14571608 GCCGTCGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTACGTGCCAATGCCA
131 GCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCGTGCCAATGCCA
** * * * *
14571673 TTTTTATGGCTCATAAACTCATACAATGGTCCCTTACGCCTTTACGTGAAGTTTCATGGCAAGGC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14571738 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGCTC-GAGATTTTTTAAAATTTTT
261 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTT
* * * ** *
14571802 TCGAAAGGATTTTTGGCTCTAAACATGGTAGGTGTGATCCTTGTATTTTTTTTGGGATGCATAAA
325 TCG-AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTT-GGTTGCA-AAA
* * *
14571867 AAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGCGTCCCCATTT
387 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14571932 CAGACACTTTAAAGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAAGGGGGTGTG
452 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTG
* * * * *
14571997 AGTTCTCGAGGTTTGATGAGCGATAGGGGGCCAATATATGGGCCAAGTGCTAGCACCGATCGCAC
516 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
14572062 ATCATGTGCGCACATCCCCCCCGGCCCCCCCGATCGTCGTAACCCCAATGCCGCCAGTCAGGTTC
581 ATCATGTGCGCACA--CCCCCTGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTC
* *
14572127 T-C-C---G----G-CGAT-GTGCCCCGAGAAGAAAAATGTGGCACCAGCAGATGCCCGAGCGTC
643 TCCACGATGCTCCGACGATGGTGCCCGGAGAAGAAAAATGTGGCACCAGCACATGCCCGAGC-TC
* *
14572181 -GCATGTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTA
707 AGCATGTGCT-GCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTA
* * * *
14572245 GACTGGGAATGAACTCTTTATGCCTAAGTCAAACCACGAAACGAGCTTACGGGCACTTAGCCGGC
771 GACTGGGAATGAACTCTGTATGCCTAAGTCAAACCACAAAACGAGCGTACGGGCACTCAGCCGGC
* * *** * *
14572310 CAGAGGGGCGGGATGTGTAAGCCAAGGATCAGCAGGGTCCCCCTTTGCATGCTGCCAATCC
836 CAAAGGGGCGGCATGCACAAGCCAAGGATCAGCAGGGTCCCCCTCTACATGCTGCCAATCC
* * * * *
14572371 TGCTACTGC-AACCTTCGGTCTGGTCCAATCTTAGACTA-TGAATGAACTCCATATGCCTAAGAC
1 TGCTACCGCAAACC-TCGGTCTGGTCCAATCTTATAC-AGGGAATGAACTCCGTATGCCTAAGCC
* * * * * * * *
14572434 AACCGACGAAACGAGTGAGCGCGCGGGTGGATGGGCACTACGCCGGCCAGAGTGACAGGATGTGC
64 AACCGACGAAACGAGCGGGCACGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGC
*
14572499 AAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCATGCCAATGC
129 AAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCGTGCCAATGC
* *
14572564 CATTTTTATGGCTTGTAAATTCATACAATGGTCACTTAAACCTTCACGTGAAGTTTCATGGCAAG
194 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * *
14572629 ACGACTCATTTTCCATTTTTCATGATTTTTAAAAAATTTTTGCGGTTCAGGATTTTTTAAAATTT
259 ACGACTCATTTTCTATTTTTCATGATTTTT-GAAACTTTTTGCGGTTCAGGATTTTTTAAAATTT
* * * **
14572694 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCTTACCCA
323 TTTC-GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGG-TTGCAAA
*
14572759 AAAAATACAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
386 AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14572824 TCAGACACTTTAATGGCTACTGGGAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAG
451 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
**
14572889 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAATACCCATCGCAC
516 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
14572954 ATCATGTGCGCACACCGCCTGGCCCCCACGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
581 ATCATGTGCGCACACCCCCTGGCCCCC-CGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTC
* * * * **
14573019 CGACGATGCTCCGACGATGGTGCGCCGGCGAAGAAAAATGCGGCACCACCTCATGCTTGAGCTCA
645 C-ACGATGCTCCGACGATGGTGC-CCGGAGAAGAAAAATGTGGCACCAGCACATGCCCGAGCTCA
* * * * * * *
14573084 GCATGTCCTGTCGTAACCCTCAATCCAGTCCGATCATAGACTGGGAATGAACTCCATATGCTTAG
708 GCATGTGCTG-CGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAG
* * * * * *
14573149 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATAAAACGAGCGTGCGGGCGCTCAGCTGGCC
772 ACTGGGAATGAACTCTGTATGCCTAAGTCAAACCACAAAACGAGCGTACGGGCACTCAGCCGGCC
*** * * *
14573214 AAAGGGGCGGCATGCACAAGCTGGGGATCGGTC-GGGTCCCCCTCTACGTGCTGCCGATCC
837 AAAGGGGCGGCATGCACAAGCCAAGGATCAG-CAGGGTCCCCCTCTACATGCTGCCAATCC
*
14573274 TGCTACCGCAAACCTCGGTCTGGTCCAATCTTATACAGGGAATGAACTCTGTATGCCTAAGCCAA
1 TGCTACCGCAAACCTCGGTCTGGTCCAATCTTATACAGGGAATGAACTCCGTATGCCTAAGCCAA
* * *** * * * *
14573339 TCGACGAAATGAGCGGGCACTATGACGGGCGGGCACTACGCCAGCCAAAGAGACGGGATGCGCAA
66 CCGACGAAACGAGCGGGCACGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * *
14573404 GCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTGATATTTCTGCGTGCCAATGCCA
131 GCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCGTGCCAATGCCA
* *
14573469 TTTTTATGGCTTGTAAATGCATACAATGGTCCCTTATGCCTTCACGTGAAGTTTCATGGCAAGAC
196 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** * * * *
14573534 GACTCATTTTCTATTTTTCACAATTTTCGAAACTTTTTTCGGTTTAGGATTTTTTAAAATTTTCT
261 GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
* * *
14573599 CGGAAGGATTTTTTGCCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCATAAAA
326 C-GAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGT-TGCA-AAAA
*
14573664 ACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTC
388 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
14573728 AGACACTTTAATGGCTACTAGCAGCAAACCCGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
453 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
14573793 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTATCGGCACCCATCGCACAT
518 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
14573858 CATGTACGCACACCCCCTGGCCCCCCGATCGCCGGAACCCCAATGTCGCCAGTCAGGTTCTCCAG
583 CATGTGCGCACACCCCCTGGCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCA-
* * * * * * *
14573923 CGATGCTCCGACGATGGTGCACTGGTGAAGAAAAATATGACACCAGCACGTGCCCCAGCCCAGCA
647 CGATGCTCCGACGATGGTGC-CCGGAGAAGAAAAATGTGGCACCAGCACATGCCCGAGCTCAGCA
* *
14573988 TGTGCTGCTGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTACGCTTAGACT
711 TGTGCTGC-GCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT
14574053 GGGAATGAACTCTGTATGCCTAAG
775 GGGAATGAACTCTGTATGCCTAAG
14574077 CCACTTGAAA
Statistics
Matches: 1478, Mismatches: 197, Indels: 52
0.86 0.11 0.03
Matches are distributed among these distances:
889 5 0.00
890 42 0.03
891 65 0.04
892 87 0.06
893 293 0.20
894 77 0.05
895 2 0.00
896 1 0.00
900 3 0.00
901 170 0.12
902 241 0.16
903 487 0.33
904 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
TGCTACCGCAAACCTCGGTCTGGTCCAATCTTATACAGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCACGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
GCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGAACATCTTCATATTTCTGCGTGCCAATGCCA
TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
GACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT
CGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTTGCAAAAAAAA
TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCTGGCCCCCCGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCACGAT
GCTCCGACGATGGTGCCCGGAGAAGAAAAATGTGGCACCAGCACATGCCCGAGCTCAGCATGTGC
TGCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAAT
GAACTCTGTATGCCTAAGTCAAACCACAAAACGAGCGTACGGGCACTCAGCCGGCCAAAGGGGCG
GCATGCACAAGCCAAGGATCAGCAGGGTCCCCCTCTACATGCTGCCAATCC
Found at i:14574157 original size:26 final size:26
Alignment explanation
Indices: 14574118--14574170 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14574108 CCAGTCTGAT
*
14574118 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATAAACTCCGTATG
* *
14574144 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGCGAATAAACTCCGTATG
14574170 C
1 C
14574171 ATAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATAAACTCCGTATG
Found at i:14574169 original size:99 final size:99
Alignment explanation
Indices: 14573997--14574175 Score: 261
Period size: 99 Copynumber: 1.8 Consensus size: 99
14573987 ATGTGCTGCT
* * * * *
14573997 GCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTACGCTTAGACTGGGAATGAA
1 GCAACCCTCAGTCCAGTCCGATCTTAGACTGCGAATGAACTCCGTACGCTTAGACTGGGAATAAA
*
14574062 CTCTGTATGCCTAAGCCACTTGAAAAAAGTGTCC
66 CTCTGTATGCATAAGCCACTTGAAAAAAGTGTCC
* * *
14574096 GCAACTCTCAGTCCAGTCTGATCTTAGACTGCGAATGAACTCCGTATGCTTAGACTGGGAATAAA
1 GCAACCCTCAGTCCAGTCCGATCTTAGACTGCGAATGAACTCCGTACGCTTAGACTGGGAATAAA
14574161 CT-TCGTATGCATAAG
66 CTCT-GTATGCATAAG
14574176 TCAACCCACA
Statistics
Matches: 70, Mismatches: 9, Indels: 2
0.86 0.11 0.02
Matches are distributed among these distances:
98 1 0.01
99 69 0.99
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (99 bp):
GCAACCCTCAGTCCAGTCCGATCTTAGACTGCGAATGAACTCCGTACGCTTAGACTGGGAATAAA
CTCTGTATGCATAAGCCACTTGAAAAAAGTGTCC
Found at i:14575054 original size:26 final size:26
Alignment explanation
Indices: 14575018--14575070 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14575008 CTGGTTCAAT
*
14575018 CTTAGACTGGGAATGGACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14575044 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14575070 C
1 C
14575071 CTAAGCCAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14575790 original size:26 final size:26
Alignment explanation
Indices: 14575752--14575804 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14575742 CTGGTCTGAT
14575752 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
*
14575778 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
14575804 C
1 C
14575805 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:14577554 original size:26 final size:26
Alignment explanation
Indices: 14577525--14577577 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14577515 TCGGTCCGAT
14577525 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
14577551 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
14577577 C
1 C
14577578 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:14577915 original size:895 final size:890
Alignment explanation
Indices: 14575044--14580969 Score: 6862
Period size: 894 Copynumber: 6.6 Consensus size: 890
14575034 ACTCCGTATG
** * *
14575044 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATTGACGAAACGAGCGGGTGGGCGAGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * * * *
14575109 ACGCCGGCCAGAGAGATGGGATACGCAAGCCATGGATTGATAGGGTGGTTGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* * * * *
14575174 ATTTTCATATTTCTCCATGCGAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTTCCTTAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* *
14575239 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTT
196 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTT
* * *
14575304 TGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA-TTTTGGCCCCAAAATTTGTAGACGTGAT
261 TGCGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
14575368 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTGT
325 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * * *
14575432 GGCCTTTTGAAAAAAGTGTCCCCATTTTAGACACCTTAATGACTACTGGCAGCAAACCTGTAAAA
390 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
14575497 TCTCAAAGGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAATATAA
455 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
** * *
14575562 GGGCCAAGTATGAGCACCCATCGCACATCATGTGCGCACACCCCCTCAG-CCCCCCAATCATCGG
520 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CAGCCCCCCCGATCGTCGG
** * * * *
14575626 AACCATAATGCCATCGGTCAGGTTCTCCGACGATGCTCGGACGATGGAGCCCCAGCGAAGAAAAA
584 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAA
* * * *
14575691 TGCGGCACCAGCACATGCCCGAACCCAGCTTGTGCTACCGCAACCCTCGGTCTGGTCTGATCTTA
649 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCCGATCTTA
* *
14575756 GACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGA
714 GACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * * * * ** *
14575821 AATGCGCATGCGGGTGCTCAGCCGGCCAGAG-GG-G---CAGGATGCGTAAGCCAGGGTTCAGCT
779 AACGAGCGTGCGGGCGCTCA---GGCCAGAGAGGTGCCCCGGGA--AGAAAGATAGGG-TCA-CC
* * * * * * * *
14575881 GGGTCCCTTCTACG-TGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCCAAC
837 AGCT-CCTGCT-CGACGCAGTCGATCCTACTGCCGCAACCCTCGGCCCAGTCCAAT
* *
14575936 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCCGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
14576001 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
14576066 ATCTTCATATTT-T---TG-C-ATGCCA-----A-----TGTAAATTCATACAATGGTCCCTTAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
14576115 GCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTT
196 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTT
* * * * *
14576180 TACGGTTCGGGATTTTTTAAAATTATTTCGGTAGGATTTTTGGCCCCAAACTTGGTGGACGTGAT
261 TGCGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
*
14576245 CCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTT
325 CCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* * *
14576310 TGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGTAAACCTGTAAA
389 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
14576375 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATGGGGGGCCAATATA
454 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
14576440 AGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCTTCGG
519 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGG
* * * * * ** *
14576505 AAGCCCAATGCCGTCGGTCAGGTTCTCCTACGATGCT-CGATGATGTTGGCCCGGCAAAGAAAAA
584 AACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAA
* * * *
14576569 TGTGGCACCAGTACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGT-TCGGTCCGATGTT
649 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCT-GGTCCGATCTT
* * *
14576633 AGACTAGGAAAGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACG
713 AGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * **
14576698 AAACGAGCGTGCGGACGCTCA-GCCGGCTAGAGG-G--GCGGGATACGCAAGCCACGGGTCACCC
778 AAACGAGCGTGCGGGCGCTCAGGCCAG--AGAGGTGCCCCGGGA-A-GAAAGATA-GGGTCA-CC
* * ** * * * * * * *
14576759 GGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCACAACCCTTGGTCCAGTTCAAC
837 AGCTCCTGCTCGAC--GCAGTCGATCCTACTGCCGCAACCCTCGGCCCAGTCCAAT
*
14576815 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGCACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* * * *
14576880 ACGTCGGCCAGAGAAACGGGATGCGTAAGCCATGGATCGAT-GGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *
14576944 ATCTTCATATTTTTG-AGTGCCAATGCCATTTTTATGGCGTGTAAATTCATACAATGGTCCCTTA
131 ATCTTCATATTTCTGCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* *
14577008 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTT
195 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTT
* * * *
14577073 TTGCGGTTCTGGA-TTTTTAAAATTATTTTGGGAAGGATTTTTAGCCCCAAACTTGGTAGACATG
260 TTGCGGTTC-GGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
* * *
14577137 ATCCTTGTATTTTTTTTGGCATACAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
323 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
14577202 ATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
388 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
14577267 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATAT
453 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
* ** *
14577332 AAGGGCGAAGTATGAGCACCCATCGCATATCATGTGCGCACACCCCCCCAGCCCCCCCGATCGTC
518 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCAGCCCCCCCGATCGTC
* *
14577397 GGAACCCCAATACCG-CTGGTCAGGTTCTCCGACGATGCTCCGACGATGGAGCCCCAACGAAGAA
582 GGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAA
* ** * * *
14577461 AAATGCGACACCAAAACATGCCCGAGCCCAGCATGTGCTGCCATAACCCTTGGT-TCGGTCCGAT
646 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCT-GGTCCGAT
*
14577525 CTTAGACT-GGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACT
710 CTTAGACTAGG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
14577589 AACGAAACGAGCGTGCGGGCGGTTAGGTTCTCCGACGATGGTGCCCCGGTGAAGAAAAATATGG-
774 CACGAAACGAGCGTGCGGGCGCTCAGG--C-CAGA-GA-GGTGCCCCGG-GAAGAAAGATAGGGT
* * * * * * ** *
14577653 CACCAGCACATGCTCGAACCCAG-CG-T-GTGCTGCCGTAACCCTCGGCCC-GATCTGAG
833 CACCAGCTCCTGCTCG-ACGCAGTCGATCCTACTGCCGCAACCCTCGGCCCAG-TCCAAT
* * * * *
14577709 CTTAGATTGGGAATGAACTCCGTATGCCTAGGCCAACCGACGAACCGAGCGGGCGAGCGGGTACT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* ** * *
14577774 ACACCGGCCAGAGAGACGGGATAAGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGGGAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
** *
14577839 ATCTTCATATTTCTGTGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCTTAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * *
14577904 ACCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAAC-TTT
196 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTT
* * * * **
14577968 TACGGTTCAAGATTTTTGAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTT-TTAGGTGTGA
261 TGCGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA-CTTGGTAGACGTGA
* *
14578032 TCCTTGTATTTTTCTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTTTG
324 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
14578097 TGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
389 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
14578162 ATATCAAATGCTCTTTAAGGGGGGGTGAGTTCTC-AGGGTTTGATGAGGGATAGGGGGCCAATAT
454 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATAT
* * * *
14578226 AAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGTACACACCCCGGCCCCCCCGATCGTCG
518 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCG
* * * * * *
14578291 AAATCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGATGAAG-AAA
583 GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAA
* * ** *
14578355 ATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCACAACCCTCGGTCTGGTCTGATCTT
648 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCCGATCTT
* * * * *
14578420 AGACTAGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTACGCCTTAGTCAACCCATG
713 AGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * ** * * * * * **
14578485 AAATGAGCATATGGGCGCTCAACCGGCCAGAG-GG-G---TGGGATGCGCAAGCTGGGGATCGGT
778 AAACGAGCGTGCGGGCGCTC-A--GGCCAGAGAGGTGCCCCGGGA--AGAAAGATAGGG-TC-AC
* * ** * ** * *
14578545 CGGGTCCCCCTCTA-GGTGCTGCTGATCCTACTACCGCAACCCTCAGCCCAGTCCAAT
836 CAGCTCCTGCTCGACGCAG-T-C-GATCCTACTGCCGCAACCCTCGGCCCAGTCCAAT
14578602 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCTGGCGAGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--------CGA----GC---
* * * * *
14578667 TGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGTGCATGCTGTGGATCAATAGGGTGGT
51 -GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * *
14578732 AGGTGGGGTTAGGGATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
115 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * *
14578797 TAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCATTTTATATTTTTCAT
180 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * **
14578862 GATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCCCCAA
245 GATTTTCGAAACTTTTTGCGG-TTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * ** *
14578927 ACGTGGGAGATC-TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAGGAACTCAA
309 ACTTGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
14578991 AGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTACTG
373 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
14579056 GTAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
438 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
14579121 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCGG
503 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAG
* * ***
14579186 CCCCCCCGATCGCCGTAACCCCAATGCCGTCGGTCAGGTTGAACGACGATGCTCC-AGCGATGGT
568 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGT
* * * **
14579250 GCCCCGACGAAGAAAAATACGACACCAGCACATGATCGAGCCCAGCATGTGCTACCGTAACCCTC
632 GCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTC
* * * * * * * **
14579315 AGCCCGGCCCAATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGCACA
697 GGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14579380 CCTAAGTCAGCCCACGTAATGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGCATGCGCAAGC
762 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC-T--CAGGCCAGA---GAGG--TGC-C---C
** * * * * * *
14579445 CGGG--GATCGATCGGGTC-CC--C-CC--CT-GAGTGCTGTCGATCC-AGCTACTGTAACCCTC
815 CGGGAAGAAAGATAGGGTCACCAGCTCCTGCTCGA-CGCAGTCGATCCTA-CTGCCGCAACCCTC
** *
14579500 GGCCTGGCCCAAT
878 GGCCCAGTCCAAT
* * * * *
14579513 CTTGGACTGGGAATAAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCTGGCAGGCGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGC-GG
* * *
14579578 CAAGCACTATGCCGACCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
61 ---GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
14579643 TTAGGCACATCTTTATATTTCTCCATGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGG
123 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
14579708 TCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCG
188 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
* * * * *
14579773 AAACTTTTTGCGGTCCAAGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACATGGTA
253 AAACTTTTTGCGGTTC-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * * * *
14579838 GGCATGATACTTGTCTTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAA
317 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * **
14579903 GATTTTGGGA-CATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTAACAGCAAA
382 GATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14579967 CCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
446 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
14580032 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTACG--CA-----CA-CCCCCCCG
511 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCG
* * * * * *
14580089 ATCGCCAGAACCCTAATACCGTCGGTCAGGCTCTCCGACGATGCTCCGACGATGGTGCCCCAGCG
576 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACG
* * * * * * * *
14580154 AAGAAAAAAGTGGCACCAGCACATGTCGGAGCCCAGTATGTGCTGCCGTGACCCTCGGTCTAGTC
641 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTC
* * * *
14580219 GGATCTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
706 CGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ***
14580284 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGA-G-G---CGGGATGCGCAAGCCGGG
771 ACCCACGAAACGAGCGTGCGGGCGCTCA---GGCCAGAGAGGTGCCCCGGGA--AGAAAGATAGG
* * ** ** * * * ** *
14580344 GATCGACCAGGTCCTCCTCTGTGTGTTGTCGATCTTGCTGCCACAACCCTCGATCCAGTCCGAT
831 G-TC-ACCAGCTCCTGCTC-G-ACGCAGTCGATCCTACTGCCGCAACCCTCGGCCCAGTCCAAT
* ** * ** *
14580408 CTTAGACTAGGAATGAACTATGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCAAGCATT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
* *
14580473 ACGCCGGCCAGGGAGACGGGATGCGCAAGCGGTGGATCGAT-GGGTGGTAGGTGGGTTTAGGCAC
66 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
* *** *
14580537 ATCTTCATATTTTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAA
131 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
* * * *
14580602 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCAAAACTTTC
196 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTT
* * * *
14580667 TACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACATGGTAGATGTGAT
261 TGCGGTTCG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
14580732 CCTTGTATTTTTGTTGGCATGCACAATAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGT
325 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
14580797 GACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
390 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
14580862 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAA
455 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
**
14580927 GGGCCAAGTACCAGCACCCATCGCACATCATGTGTACACACCC
520 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
14580970 TCAGTCCGGT
Statistics
Matches: 4317, Mismatches: 567, Indels: 301
0.83 0.11 0.06
Matches are distributed among these distances:
874 4 0.00
876 117 0.03
877 58 0.01
878 241 0.06
879 348 0.08
881 5 0.00
882 2 0.00
883 1 0.00
884 8 0.00
885 7 0.00
886 414 0.10
887 46 0.01
888 10 0.00
889 9 0.00
890 1 0.00
891 11 0.00
892 263 0.06
893 354 0.08
894 585 0.14
895 572 0.13
896 5 0.00
897 4 0.00
898 10 0.00
899 16 0.00
900 5 0.00
901 9 0.00
902 12 0.00
903 444 0.10
905 2 0.00
909 185 0.04
910 339 0.08
911 202 0.05
912 3 0.00
913 3 0.00
914 5 0.00
915 4 0.00
918 2 0.00
920 2 0.00
921 6 0.00
925 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACT
ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTT
TGCGGTTCGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
CTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCCGATCGTCGGAA
CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCAACGAAGAAAAATG
CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCTGGTCCGATCTTAGA
CTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGGCCAGAGAGGTGCCCCGGGAAGAAAGATAGGGTCACCAGCTCCTGC
TCGACGCAGTCGATCCTACTGCCGCAACCCTCGGCCCAGTCCAAT
Found at i:14578457 original size:26 final size:26
Alignment explanation
Indices: 14578417--14578466 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14578407 CTGGTCTGAT
14578417 CTTAGACTAGCAATGAACTCCGTATG
1 CTTAGACTAGCAATGAACTCCGTATG
* * *
14578443 CTTAGACTGGGAATGAACTTCGTA
1 CTTAGACTAGCAATGAACTCCGTA
14578467 CGCCTTAGTC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.30, C:0.20, G:0.22, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGCAATGAACTCCGTATG
Found at i:14579907 original size:903 final size:896
Alignment explanation
Indices: 14575044--14580969 Score: 7447
Period size: 895 Copynumber: 6.6 Consensus size: 896
14575034 ACTCCGTATG
**
14575044 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATTGACGAAACGAGCGGGTG-GGC--GAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-GCGGCGGGAGC
* * * * *
14575106 ACTACGCCGGCCAGAGAGATGGGATACGCAAGCCATGGATTGATAGGGTGGTTGGTGGGTTTAGG
65 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
14575171 CACATTTTCATATTTCTCCATGCGAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTTCCT
130 CACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* *
14575236 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACT
195 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACT
* *
14575301 TTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGA-TTTTGGCCCCAAA-ATTTGTAGACG
260 TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACA-TGGTAGACG
14575364 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-T
324 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* * * * *
14575428 TTGTGGCCTTTTGAAAAAAGTGTCCCCATTTTAGACACCTTAATGACTACTGGCAGCAAACCTGT
389 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
14575493 AAAATCTCAAAGGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGGGTTAGGGGGCCAAT
454 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
** * * *
14575558 ATAAGGGCCAAGTATGAGCACCCATCGCACATCATGTGCGCACACCCCCTCAG-CCCCCCAATCA
519 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCG
** * * *
14575622 TCGGAACCATAATGCCATCGGTCAGGTTCTCCGACGATGCTCGGACGATGGAGCCCC-AGCGAAG
583 TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAG
* * * * *
14575686 AAAAATGCGGCACCAGCACATGCCCGAACCCAGCTTGTGCTACCGCAACCCTCGGTCTGGTCTGA
647 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCGA
* *
14575751 TCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
712 TCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * * * *
14575816 CACGAAATGCGCATGCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGTAAGCCAGGGTTC-AGC
777 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * *
14575880 TGGGT-CCCTTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCAGTCCAAC
842 -GGGTCCCCCTCTACGTGCTGTCGATCCAGCTGCCGCAACCCTCGG-CCAGTCCAAT
* *
14575936 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCCGGC-GG-GCA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGCGGGAGCA
14575999 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
66 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
14576064 ACATCTTCATATTT-T---TG-C-ATGCCA-----A-----TGTAAATTCATACAATGGTCCCTT
131 ACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
14576113 AAGCCTTCACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTT
196 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTT
* * * * * * *
14576178 TTTACGGTTCGGGATTTTTTAAAATTATTTCGGTAGGATTTTTGGCCCCAAACTTGGTGGACGTG
261 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTG
14576243 ATCCTTGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
326 ATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * * *
14576308 TTTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGTAAACCTGTA
390 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
14576373 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATGGGGGGCCAATA
455 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
14576438 TAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCAATCTTC
520 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC
* * * * * * *
14576503 GGAAGCCCAATGCCGTCGGTCAGGTTCTCCTACGATGCT-CGATGATGTTGGCCCGGCAAAGAAA
585 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * * *
14576567 AATGTGGCACCAGTACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTTCGGTCCGATGT
650 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCGATCT
* * *
14576632 TAGACTAGGAAAGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAC
715 TAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
14576697 GAAACGAGCGTGCGGACGCTCAGCCGGCTAGAGGGGCGGGATACGCAAGCCACGGG-TC-ACCCG
780 GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC-GGGGATCGA-TCG
* * * *
14576760 GGTCCCCCTCTACGTGCTGTCGATCCTA-CTGCCACAACCCTTGGTCCAGTTCAAC
843 GGTCCCCCTCTACGTGCTGTCGATCC-AGCTGCCGCAACCCTCGG-CCAGTCCAAT
*
14576815 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGC-GGGCGG-GCGG-GC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGCG-GGAGC
* * * *
14576877 ACTACGTCGGCCAGAGAAACGGGATGCGTAAGCCATGGATCGAT-GGGTGGTAGGTGGGTTTAGG
65 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
** *
14576941 CACATCTTCATATTT-TTGAGTGCCAATGCCATTTTTATGGCGTGTAAATTCATACAATGGTCCC
130 CACATCTTCATATTTCTCCA-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
14577005 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAAC
* * * *
14577070 TTTTTGCGGTTCTG-GA-TTTTTAAAATTATTTTGGGAAGGATTTTTAGCCCCAAACTTGGTAGA
259 TTTTTGCGGTTC-GAGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGA
* * * *
14577133 CATGATCCTTGTATTTTTTTTGGCATACAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
322 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
14577198 TTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
387 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
14577263 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCA
452 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* ** * *
14577328 ATATAAGGGCGAAGTATGAGCACCCATCGCATATCATGTGCGCACACCCCCCCAGCCCCCCCGAT
517 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGAT
* * *
14577393 CGTCGGAACCCCAATACCG-CTGGTCAGGTTCTCCGACGATGCTCCGACGATGGAGCCCCAACGA
581 CGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* ** * * * *
14577457 AGAAAAATGCGACACCAAAACATGCCCGAGCCCAGCATGTGCTGCCATAACCCTTGGTTCGGTCC
645 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCC
14577522 GATCTTAGACT-GGAAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
710 GATCTTAGACTAGG-AATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * * * * **
14577586 ACTAACGAAACGAGCGTGCGGGCGGTTAG--GTTCTCCGA--CGATGG-TGC-C---CCGGTGAA
774 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-GC-CAGAGGGGCGGGATGCGCAAGCCGG-G--
*** ** * ** * * * *
14577642 GAAAAATATGG-CACCAGC-ACATGC--TCGAACCCAGCGTGTGCTGCCGTAACCCTCGGCCCGA
834 GATCGATCGGGTCCCCCTCTACGTGCTGTCG-ATCCA------GCTGCCGCAACCCTCGGCCAG-
** *
14577703 TCTGAG
891 TCCAAT
* * * *
14577709 CTTAGATTGGGAATGAACTCCGTATGCCTAGGCCAACCGACGAACCGAGC-GGGCGAGC-GG-GT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCG-GCGGGAGC
* ** *
14577771 ACTACACCGGCCAGAGAGACGGGATAAGCAAGCCGTGGATCGATAGGGTGGTTGGTGGGTTTAGG
65 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *** *
14577836 GACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAAGGCTTGTAAATTCATACAATGGTCCCT
130 CACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
14577901 TAAACCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAAC-
195 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACT
* * * * ** **
14577965 TTTTACGGTTCAAGATTTTTGAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACCTTTTAGGTGT
260 TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGT
* *
14578030 GATCCTTGTATTTTTCTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTACAAGATTT
325 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
14578095 TGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
390 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
14578160 AAATATCAAATGCTCTTTAAGGGGGGGTGAGTTCTC-AGGGTTTGATGAGGGATAGGGGGCCAAT
455 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAAT
* * *
14578224 ATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGTACACACCCCGGCCCCCCCGATCGT
519 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT
* * * * *
14578289 CGAAATCCTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGATGAAG-A
584 CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * ** * *
14578353 AAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCACAACCCTCGGTCTGGTCTGATC
649 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCGATC
* * * *
14578418 TTAGACTAGCAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTACGCCTTAGTCAACCCA
714 TTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * ** * * * *
14578483 TGAAATGAGCATATGGGCGCTCAACCGGCCAGAGGGGTGGGATGCGCAAGCTGGGGATCGGTCGG
779 CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
* * *
14578548 GTCCCCCTCTAGGTGCTG-CTGATCCTA-CTACCGCAACCCTCAGCCCAGTCCAAT
844 GTCCCCCTCTACGTGCTGTC-GATCC-AGCTGCCGCAACCCTC-GGCCAGTCCAAT
14578602 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGGGCTGGCGAGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--------CGAGC--G-GGG
* * * * * * *
14578667 TGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGTGCATGCTGTGGATCAATAGGGTGGT
55 -CGGC-GG-GAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
14578732 AGGTGGGGTTAGGGATATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
117 AGGTGGGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * *
14578797 TAGAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCATTTTATATTTTTCAT
182 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * **
14578862 GATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTTAAATTTTTTTAGAAGGAGTTTTGGCCCCAA
247 GATTTTCGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * ** *
14578927 ACGTGGGAGATC-TGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAGGAACTCAA
312 ACATGGTAGA-CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
14578991 AGTGTACAAGATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTACTG
376 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * *
14579056 GTAGGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
441 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
14579121 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACACCCCCCGG
506 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * ***
14579186 CCCCCCCGATCGCCGTAACCCCAATGCCGTCGGTCAGGTTGAACGACGATGCTCC-AGCGATGGT
571 CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGT
* * **
14579250 GCCCCGACGAAGAAAAATACGACACCAGCACATGATCGAGCCCAGCATGTGCTACCGTAACCCTC
635 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTC
* * * * * * **
14579315 AGCCCGGCCCAATCTTAGACTAGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGCACA
700 GGTCCGGTCCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14579380 CCTAAGTCAGCCCACGTAATGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGCATGCGCAAGC
765 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * *
14579445 CGGGGATCGATCGGGTCCCCCCCTGA-GTGCTGTCGATCCAGCTACTGTAACCCTCGGCCTGGCC
830 CGGGGATCGATCGGGTCCCCCTCT-ACGTGCTGTCGATCCAGCTGCCGCAACCCTCGGCC-AGTC
14579509 CAAT
893 CAAT
* * * *
14579513 CTTGGACTGGGAATAAACTCCGTATGCCTAAGCCAATCGATGAAACGAGCTGGCAGGCGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG--GGCGG-CGGG
* * *
14579578 CAAGCACTATGCCGACCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
62 --AGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
14579643 TTAGGCACATCTTTATATTTCTCCATGCCAATGCCATTTTTATGGCTTGGAAATTCATACAATGG
125 TTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
14579708 TCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCG
190 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
* * * *
14579773 AAACTTTTTGCGGTCCAAGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACATGGTA
255 AAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTA
* * * * * * *
14579838 GGCATGATACTTGTCTTTTTTTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAA
320 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * **
14579903 GATTTTGGGA-CATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAATGCCTACTAACAGCAAA
385 GATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
14579967 CCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGG
449 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
14580032 CCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTACGCACA--------CCCCCCCG
514 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * * *
14580089 ATCGCCAGAACCCTAATACCGTCGGTCAGGCTCTCCGACGATGCTCCGACGATGGTGCCCC-AGC
579 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-C
* * * * * * * **
14580153 GAAGAAAAAAGTGGCACCAGCACATGTCGGAGCCCAGTATGTGCTGCCGTGACCCTCGGTCTAGT
643 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGT
* * * *
14580218 CGGATCTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
708 CCGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
*
14580283 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATC
773 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * ** * ** * * *
14580348 GACCAGGTCCTCCTCTGTGTGTTGTCGATCTTGCTGCCACAACCCTCGATCCAGTCCGAT
838 GATCGGGTCCCCCTCTACGTGCTGTCGATCCAGCTGCCGCAACCCTCG-GCCAGTCCAAT
* ** *
14580408 CTTAGACTAGGAATGAACTATGTATGCCTAAGCCAACCGACGAAACGAGCGGGTG-GGC--AAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGG-GCGGCGGGAGC
* * *
14580470 ATTACGCCGGCCAGGGAGACGGGATGCGCAAGCGGTGGATCGAT-GGGTGGTAGGTGGGTTTAGG
65 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* *** *
14580534 CACATCTTCATATTTTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTACCT
130 CACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCT
* * *
14580599 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCAAAACT
195 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACT
* * * *
14580664 TTCTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACATGGTAGATGT
260 TTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGT
* *
14580729 GATCCTTGTATTTTTGTTGGCATGCACAATAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTT
325 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
14580794 TGTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
390 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
14580859 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATA
455 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
**
14580924 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTACACACCC
520 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
14580970 TCAGTCCGGT
Statistics
Matches: 4363, Mismatches: 552, Indels: 241
0.85 0.11 0.05
Matches are distributed among these distances:
876 115 0.03
877 48 0.01
878 259 0.06
879 350 0.08
881 1 0.00
882 2 0.00
883 1 0.00
884 6 0.00
886 411 0.09
887 51 0.01
888 8 0.00
889 6 0.00
890 5 0.00
891 5 0.00
892 266 0.06
893 352 0.08
894 591 0.14
895 613 0.14
896 10 0.00
897 4 0.00
898 5 0.00
899 7 0.00
900 2 0.00
901 7 0.00
902 12 0.00
903 452 0.10
905 5 0.00
906 1 0.00
907 1 0.00
908 1 0.00
909 174 0.04
910 346 0.08
911 244 0.06
912 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGGCGGCGGGAGCA
CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
ACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTT
TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACATGGTAGACGTG
ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCG
GAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGTAACCCTCGGTCCGGTCCGATCTT
AGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT
CCCCCTCTACGTGCTGTCGATCCAGCTGCCGCAACCCTCGGCCAGTCCAAT
Found at i:14580259 original size:26 final size:26
Alignment explanation
Indices: 14580223--14580275 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14580213 CTAGTCGGAT
14580223 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
* *
14580249 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATCAACTCCGTATG
14580275 C
1 C
14580276 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATCAACTCCGTATG
Found at i:14581036 original size:26 final size:27
Alignment explanation
Indices: 14580984--14581042 Score: 93
Period size: 26 Copynumber: 2.2 Consensus size: 27
14580974 TCCGGTCTGA
* *
14580984 CCTTAGACTGGGAATGAACTTCGTATG
1 CCTTAGACTGGGAATGAACTCCATATG
14581011 -CTTAGACTGGGAATGAACTCCATATG
1 CCTTAGACTGGGAATGAACTCCATATG
14581037 CCTTAG
1 CCTTAG
14581043 TCAACCCACG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
26 24 0.83
27 5 0.17
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (27 bp):
CCTTAGACTGGGAATGAACTCCATATG
Found at i:14581695 original size:771 final size:762
Alignment explanation
Indices: 14580223--14581740 Score: 2198
Period size: 771 Copynumber: 2.0 Consensus size: 762
14580213 CTAGTCGGAT
* *
14580223 CTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
1 CTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
* *
14580288 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGACCA
66 ACGAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGACCA
* * ** * *
14580353 GGTCCTCCTCTGTGTGTTGTCGATCTTGCTGCCACAACCCTCGATCCAGTCCGATCTTAGACTAG
131 GGTCCTCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGATCCAGTCCAATCTTAGACTAG
* ** * * ** *
14580418 GAATGAACTATGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGGCAAGCATTACGCCGGCCA
196 GAAAGAACTACATATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCAAGCACAACACCGGCCA
* * **
14580483 GGGAGACGGGATGCGCAAGCGGTGGATCGATGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
261 AGGAGACGAGATGCGCAAGCAATGGATCGATGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * *
14580548 TTTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTACCTTAAGCCTTCACGTG
326 TCTACGTGCCAATGCCATTTTTATGGCCTGTAAAGTCATACAATGGTACCTTAAGCCTTCACGTG
* *
14580613 AAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACGATTTTCAAAACTTTCTACGGTTCGAG
391 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAACTTTCTACGGTTCGAG
* * * * *
14580678 ATTTTTTAAAATTTTTTCGGAAGGGGTTTTGGCCCCAAACATGGTAGATGTGATCCTTGTATTTT
456 ATTTGTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGGATTTT
14580743 TGTTGGCATGCACAATAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAA
521 TGTTGGCATGCACAATAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAA
*
14580808 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
586 AAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* *
14580873 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTAC
651 CTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGAGCCAAGTAC
* *
14580938 CAGCACCCATCGCACATCATGTGTACACACCCTCAGTCCGGTCTGAC
716 CAGCAACCATCGCACATCATGTGCACACACCCTCAGTCCGGTCTGAC
* * *
14580985 CTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCATATGCCTTAGTCAACCC
1 CTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
* * * * **
14581050 ACGAAATGAGCGTGCGGGCACTTAGCCAGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGTC-
66 ACGAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGACCA
** * *
14581114 GAGT-CTCCCTCTGCGTGCTACCGATCCTGCTGCCGTAACCCTCGGTCC-GATTCAATCTTAGAC
131 G-GTCCT-CCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGATCCAG-TCCAATCTTAGAC
* * * **
14581177 TGGGAAAGAACTGCATATGGCTAAGCCAACCAACGAAACGAGCGGGAGGGCGGGCGGGCGGGCAC
193 TAGGAAAGAACTACATATGCCTAAGCCAACCAACG-AA--A-C--GA--GCGGGCGGGCAAGCAC
* * * *
14581242 AACACCGGGCAAGGAGACGAGATGTGCAAGCAATGGATCGGTAGGGTGTTAGGTGGGTTTAGGCA
250 AACACCGGCCAAGGAGACGAGATGCGCAAGCAATGGATCGAT-GGGTGGTAGGTGGGTTTAGGCA
*
14581307 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCCTGTAAAGTCATACAATGGTCCCTTA
314 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCCTGTAAAGTCATACAATGGTACCTTA
* *
14581372 AGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTT
379 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAACTTT
* * *
14581437 TTGCGGTTCGAGATTTGTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
444 CTACGGTTCGAGATTTGTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGA
* * * ** *
14581502 TCCTTGGATTTTTGTTGGCATGCATAA-AAACATTTAGCTAAAAACTCGAAGTGTGTAAGTTTTT
509 TCCTTGGATTTTTGTTGGCATGCACAATAAA-ATTCAGCCAAAAACTCGAAGTGTACAAGATTTT
*
14581566 GTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
573 GTGACCAATTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* *
14581631 AATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGCGGGCCAATAT
638 AATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATAT
* *
14581696 AAGAGCCAAGTACTAGCAACCATCGCACATCATGTGCGCACACCC
703 AAGAGCCAAGTACCAGCAACCATCGCACATCATGTGCACACACCC
14581741 CCCAGCCCCC
Statistics
Matches: 666, Mismatches: 77, Indels: 17
0.88 0.10 0.02
Matches are distributed among these distances:
761 4 0.01
762 190 0.29
763 2 0.00
765 1 0.00
766 1 0.00
768 2 0.00
770 48 0.07
771 418 0.63
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (762 bp):
CTTAGACTGGGAATCAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCACTCAGCCAGCCAGAGAGGCGGGATGCGCAAGCCGGGGATCGACCA
GGTCCTCCTCTGCGTGCTACCGATCCTGCTGCCACAACCCTCGATCCAGTCCAATCTTAGACTAG
GAAAGAACTACATATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCAAGCACAACACCGGCCA
AGGAGACGAGATGCGCAAGCAATGGATCGATGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
TCTACGTGCCAATGCCATTTTTATGGCCTGTAAAGTCATACAATGGTACCTTAAGCCTTCACGTG
AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACAATTTTCAAAACTTTCTACGGTTCGAG
ATTTGTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGATCCTTGGATTTT
TGTTGGCATGCACAATAAAATTCAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCAATTGAA
AAAAGTGTCCCCATGTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
CTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGAGCCAAGTAC
CAGCAACCATCGCACATCATGTGCACACACCCTCAGTCCGGTCTGAC
Found at i:14582740 original size:889 final size:890
Alignment explanation
Indices: 14580966--14589862 Score: 7767
Period size: 889 Copynumber: 9.9 Consensus size: 890
14580956 ATGTGTACAC
* * * * *
14580966 ACCCTCAGTCCGGTCTGACCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACT-
* * * * *
14581031 CA-TATGCCTTAGTCAACCCACGAAATGAGCGTGCGGGCACTTAGCCAGCCAGAGGGGCGGGATG
65 CAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * * *
14581095 TGCAAGCCGGGGATCGGTCGAGTCTCCCTCTGCGTGCTACCGATCCTGCTGCCGTAACCCTCGGT
130 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT
* * * *
14581160 CCGATTCAATCTTAGACTGGGAAAGAACTGCATATGGCTAAGCCAACCA-ACGAAACGAGCGGGA
195 CCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA-CATACG-AA--A-C--GA
* * * * * ** *
14581224 GGGCGGGCGGGCGGGCACAACACCGGGCA-AGGAGACGAGATGTGCAAGCAATGGATCGGTAGGG
253 --GC--GCGGGCGGGCACTACGCCGGCCAGA-GAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
14581288 TGTTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCCTGTAAA
313 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
14581353 GTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCTTGGCAAGACGACTCGTTTTCTATTTT
378 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * *
14581418 TCACAATTTTCAAAACTTTTTGCGGTTCGAGATTTGTTAAAATTTTTTCAGAAGGAGTTTTGGCC
443 TCACGATTTTTAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * * * *
14581483 CCAAACTTGGTAGACGTGATCCTTGGATTTTTGTTGGCATGCATAAAAACATTTAGCTAAAAACT
508 CCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
** * *
14581548 CGAAGTGTGTAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATGTCAGACACTTTAATGGCTA
573 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
14581613 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATGA
638 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGA
* * * *
14581678 GGGATAGCGGGCCAATATAAGAGCCAAGTACTAGCAACCATCGCACATCATGTGCGCACACCCCC
703 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
* * ** * * *
14581743 CAGCCCCCTGATCGTCGGAACCACAATGCCGCTAGTCAGGTTCTTCGGTGATGCTCCGATGATGG
768 CAGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC-TCCGCGATGCTCCGGTGATGG
* * * * ** * **
14581808 TGCCCCAACGAAGATAAATGTAGCAATAGCACATGCTCGAGCCCAGCATGTGCTGCCATA
832 TGCCCCGATGAAGAAAAATGGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
14581868 ACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGCAATGAACTT
1 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTC
* * * * *
14581933 AGTATGACTAAGTCAACCAATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGG
66 AGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * *
14581998 GCAAGCCGGGGATCAGCCGAGTCCCCCTCTACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTC
131 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
* * * * *
14582063 CGGTCCGATCGTATACTGGGAATGAACTCCATATGCCTAAGCCAACATATGAAACGA-C-CGGGC
196 CGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACATACGAAACGAGCGCGGGC
*
14582126 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA-GGTGGTAGGTGGGTT
261 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
14582190 TAGGCACATATTCATATTTCTGCGTGCCAATGCTACTTTTATGGCTTGTAAATTCATACAATGGT
326 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* ** *
14582255 CCCTTAAGCCTTCACGTGCAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTTGATTTTTGA
391 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAA
** * * ** *
14582320 AACTTTTTGCAATTCAAGATTTTTTAAAATTTATTCGGAAGGACTTTTCACCCCAAACTTGGTAA
456 AACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
14582385 ACGTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
521 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * * *
14582450 ATTTTGTGACCATTTGAAAAAAATATCCCCATTTCAGACACTTTAATGGCTACTAGCAGTAAACC
586 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
14582515 TGTAAAATCTCAAATGCTCTTTAACGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCC
651 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCC
** * *
14582580 AATATAAGGGCCAAGTAAAAGCACCCATCGCAGATCATGTGCGCACACCTCCCAGCCCCCCGATC
716 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCGATC
* * *
14582645 GTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGACGAAG
781 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGGTGATGGTGCCCCGATGAAG
** * *
14582710 AAAAATGTGACACCAGCATGTGCCCGAGCCCAGAATGTGCTACCGCA
845 AAAAATG-GACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
14582757 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTA----T-GACT---AA-G---TC
1 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTC
* * * * *
14582810 A--A--CC-AA-T--------GAAACGAGCATGCGGGAGCTCAGCAGGCCAGAAGGGCAGGATGC
66 AGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
** * * ** * * *
14582861 GCAAGCCGGGGATCTACCGGGTGCCCCTCTGCATGCTATCGATCCTGCTACCGTAACCCTCAGTC
131 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
* * * * * **
14582926 TGATCTAATCTTAGACTGAGAATGAACTCCGTTTGCCTAAGCCAACCGACGAAACGAGCGGGTGG
196 CGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACATACGAAACGAGC-----G
* * *
14582991 ACGGGTGAGCGGGCTCTACGTCGGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGG
256 -C--G-G-GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
14583056 TAGGTGGGTTTAGGCACATCTTCATCTTTCTGCATGCCAATGTCATTTTTATGGCTTGTAAATTC
316 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
*
14583121 AGACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
381 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
** * * * * *
14583186 TAATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAGTTTTTTTGGAAGGAGTTTTGGCCTCA
446 CGATTTTTAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* ** * *
14583251 AACTTGGTAGATGTGATCCTTGTATTTTGGTTGGCATGCACAAAAAAATTAAGCTAAAAACACGA
511 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
14583316 TGTGTACAAGATTTTGTGCCCATTT-AAAAAGAGTGTCCCCATTTCAGACACTTTAATGTCTACT
576 AGTGTACAAGATTTTGTGACCATTTGAAAAA-AGTGTCCCCATTTCAGACACTTTAATGGCTACT
* *
14583380 GGCAGCAAACCTGTAAAATCTCAAATGCTCTCTAAGGGGG-GTGAGTTCTCGAGGTTTGATGAGG
640 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGG
* * *
14583444 GATAGGGGGACAATATATGGGCCAAGTACCAGTACCCATC-CACATCATGTGCGCACACCCCCCC
705 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCC
* * * * *
14583508 CGGCCGCCTCGATCGTCGAAACCCCAATGCCGCCAGTCAGATTCTCCGGCGATGCTCCGGTGATG
768 CAGCC-CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGGTGATG
* * * ** *
14583573 GTGCCCCAATGAAAAAAAATGCAGCACCAGCACATGCTTGTGCCCAGCATGTGCTGCCGCA
831 GTGCCCCGATGAAGAAAAATGGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* ** * * *
14583634 ACCCTCGATCAAATCTGATCTTAGATTGGGAATGAACTTCGTATGCTTAGATTGG-AATGAACTC
1 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTC
* * * * * * * *
14583698 CGTATGCCTAAGGCAACCCACAAAACGAGCGTGCAGGCACTCAGCAGGCCAAAGGGGCAGGATGC
66 AGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * * *
14583763 GCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTACTGCCGATCCTGCTGCCGTAACCCTTGGTC
131 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
* * *
14583828 TGGTCCAATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCA-ACGAAACGAGCGGCGG
196 CGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAA-CATACGAAACGAGC-GC--
* * * *
14583892 GCAGGCGGGGACTACGCCTGTCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGATGGTAGG
257 G--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
14583957 TGGGTTTAGGTACATCTTCATATTTCTACGCGCCAATGCCATTTTTATGGGTTGCAAATTCATAC
320 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
14584022 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGAT
385 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * ** *
14584087 TTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACT
450 TTTTAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* *
14584152 TGGTAGACGTGATCCTTGTATTTTTATT-GCAATACACAAAAAAATTCAGC-AAAAACTCGAAGT
515 TGGTAGACGTGATCCTTGTATTTTTTTTGGC-ATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
14584215 GTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAAGGCTGCTGGCA
579 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* ** *
14584280 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCTAGGTTTGATGAGGGATT
644 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATA
* * *
14584345 GGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGGGCGCACACCCCCACCGGC
709 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CCAGC
* * * * *
14584410 CCCTCCGATCGCCGGAACCCCAATGCAGTCGGTCAGGCTCT-C-CG--G---C--T-A---TGCT
772 CCC-CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGGTGATGGTGCC
* ** * * **
14584462 TCGATGAAGAAAAATGCGATGCCAGCACATGCTCGAGCCCAGCATGTGCTACCATA
836 CCGATGAAGAAAAATG-GACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
14584518 A-CC-C--T-C-A---G----T--AC-----A-G---TCCG-AT-CTTAGACTGGGAATGAACTC
1 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTC
* * *
14584557 CGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTTAGCCGGCCAGAGGGGCGGGATGC
66 AGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* ** * * * * *
14584622 ACAAGTTGGGAATCGGTCGGGTCCCCCTCTGTGTGCTGTCAATCCTGCTGCTC-CAACCCTCGGT
131 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGC-CGCAACCCTCGGT
* * *
14584686 CCGATCCAATATTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC-TGACGAAACGAGCGGGC
195 CCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACAT-ACGAAACGA----GC
* * * * *
14584750 GGGCGGGTGGGCGGGCACTACGCCGGCCAAAGAAATGGGATACGCAAGCTGTGGATCGATAGGGT
255 --GC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* ** * *
14584815 GGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGTGTTCCAATGCCATTTTTATGGCTTGAAAAT
314 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
14584880 TCATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACACGTTTTCTATTTTT
379 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * ** * * *
14584945 CACAATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCA
444 CACGATTTTTAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
14585010 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
509 CAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
14585075 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCCAC
574 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
14585140 T-GCAGCAAACCTGTAAAATCTCAAATGCTCATTAAGGGAGTGTGAGTTCTCA-AGCTTTGATGC
639 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATG-
* * * *
14585203 A-GGATA--GGG---------GGG-CAAGTACCAGCACCCATCACACATCCTATGCACACACCCC
702 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCC
* * * * *
14585255 CTCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAAGTTCTCCTGCGATACTCTGGTG
766 C-CCAG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGGTG
* * * *
14585320 ATGGTGCCCCGGTGAAGAAAAATGCGACACTAGCACATGCCCAAGCCCAGCATGTGCTGTCGCA
828 ATGGTGCCCCGATGAAGAAAAATG-GACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* *
14585384 ACCCTCGATCCGGTCCT-ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGTG-AATGAAC
1 ACCCTCGGTCCGAT-CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG-GCAATGAAC
* **
14585447 TTC-GTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCGGGA
64 -TCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
** ** * * * *
14585511 TGCGCAAGCCATGGATCTACCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGCCGTAACCCTCA
128 TGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAA-CC-C-
* *
14585576 GTCCGGTCTAGTTTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCC
190 -T-CGGTC---------C---G-AT---C-C--AAT-CTTAGACTGGGAATGAACTCCATATGCC
* ** * * * * *
14585641 TAAGTCAACCCACGTAACGA--GCGTGCGGGCGCT-CAGCCGGCCAGAGGGGCGGGATGCGCAAG
233 TAAGCCAACATACGAAACGAGCGCGGGCGGGCACTAC-GCCGGCCAGAGAGACGGGATGCGCAAG
* * * * * * *
14585703 CCGGGGATCGATCGGGTGCCCCTCTGCGTGCTATCGATCCTGCT-GCCGCAACCCTCAGTTCGGT
297 CCGTGGATCGATAGGGTG---GT-AG-GTG-----GGT--T--TAG--GC-A-CATC--TTC-AT
* * ** * ** * * * * * * * *
14585767 CTGATCTTA-GACTGGGAATG-AACTTCGTATGCCTAAGCCAACTGACGAAACGAGTGGGCGGGC
341 AT-TTC-TACG--TGCCAATGCCA-TTTTTATGGCT-TG-TAAAT-TC-ATAC-AATGGTC---C
**** * *** * * **
14585830 GGGCGGGCGGGCGGGC-ACTACGCTAGACAGAGAGACGGGATGCGCAAGCAGTGGATCAATAGGG
393 ---C--TTAAGC---CTTC-ACG-T-G--A-AGTTTC---ATG-GCAAG-A--CGA-C--TCGTT
** * * * * * * *
14585894 TGGTAGGTGGGTTTAGGCAC-A-TCTTCATA-TTTCTAC-GTGCGAATGCCATTTTTATGGCTTG
434 TTCTA--T---TTT--TCACGATTTTTAAAACTTTTTGCGGTTC-AA-G--A--TTT-T---TT-
* ** * * ** ** ** * * *
14585955 TAAATTCATAC--AATG-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
481 AAAATTTTTTCGGAAGGAGT---TTTGGCC--C-C---AAACTTGGTAG-ACG-TGA-TC--CTT
* ** *** * *** * * ***** ** * * *
14586017 CTATTTTTCATGATTTTTGAAACTTTTTAAAGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAT
532 GTATTTTTTTTG--GCATG-CAC--AAAAAAATTCAGCTAAAAACTCGAA-GTGTAC--AA-GAT
* * * * * ** ** * ** ***** * *
14586081 TTT-TCGCCCCAAACTTGGAAGATGTGATCCTTGTATTTTTGTTGGCA-TGCAAAAAAAAAT-TC
588 TTTGT-G-ACC--ATTTGAAAAAAGTG-TCC--CCA--TTT-CAGACACTTTAATGGCTACTGGC
* * * * **** * *
14586143 AGCTAAAAACT-CAAAGTGTACAAGATTTTG-TGACCATTTGAAAAAAGTGTCCCCATTTC-AGA
643 AGC--AAACCTGTAAAATCT-CAA-A---TGCT---C-TTT-AAGGGGGTGT---GAGTTCTAGA
** * ** ** * * *** * * * ****** * *
14586205 CACTTTAATG-GCTACT-GGCAGCAAACTTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGT
693 -GGTTTGATGAGGGA-TAGGGGGCCAA--TATAAGGGC-CAAGTAC-C----AGCACCCAT-CGC
* * ** * ***** **** * * ** * *
14586268 TC-TCAAGGTTTG-ATGA-GGGATAGGGGGCCAAT-AT---AAGGGCCAAGTACCGTCGGTCAGG
747 ACATC-ATGTGCGCA-CACCCCCCAGCCCCCCGATCGTCGGAA-CCCCAA-TGCCGCCGGTCAGG
* ** *
14586326 TTCTCCTGCGATGCTTCGACGATGGTGCCCCGGTGAAGAAAAATATGG-CACCAGCACATGCCCG
808 TTCTCC-GCGATGCTCCGGTGATGGTGCCCCGATGAAG-AAAA-ATGGACACCAGCACATGCCCG
*
14586390 AGCCCAGCATGTGCTGCCACA
870 AGCCCAGCATGTGCTGCCGCA
* * * * *
14586411 ACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCAGCACGCTTAGACT-ACGAATGAACT
1 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGC-AATGAACT
* * * * * ** *
14586475 CCGCATGCTTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAATCGTCCAGAGGGGCGGGATG
65 CAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * ** * ** *
14586540 CGTAAGCTGGTGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCT-ATGACAACCCTCAG
130 CGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG-CAACCCTCGG
** * ** *
14586604 TTTGATCAAATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAAC-TGACGAAATGAGCGGG
194 TCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACAT-ACG-AA--A-C---
* * *
14586668 TGGGCAAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCACA-CCATGGATCAATAGG
251 -GAGC--GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA-AGCCGTGGATCGATAGG
14586732 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA-TTTTATGGCTTGTAA
312 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
* *
14586796 ATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTT
377 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
14586861 TTCACGATTTTCAAAAATTTTTACGGTTGAAGATTTTTCAAAATTTTTT-GGAAAGGAGTTTTGG
442 TTCACGATTTTTAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGG
** * * * *
14586925 CATCAAACTCGGTAGACGTGATCCCTGTATTTTTATTGGCATGGACAAAAAAATTCAGCTAAAAA
506 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
14586990 CTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGC
571 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
14587055 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
636 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGAT
*
14587120 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGCACACCC
701 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * ** * * * *
14587185 TCCGGCCCCCCTGATCACCAGAACCCCAATGCCGCCGGTCAGGATCTCCGGCAATGCTCCGGCGA
766 CCCAGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGCTCCGGTGA
* * * *
14587250 TGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCACGAGCCCAGCATGTGCTGTCGTA
829 TGGTGCCCCGATGAAGAAAAATGGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * * *
14587313 ACCCTCGGT-CTAGTCCGATCTTGGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACT
1 ACCCTCGGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACT
* * * *
14587377 CCA-TATGCTTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTTAGCCGGCCAGAAGGGCGGGAT
65 -CAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
* * * * * * ** *
14587441 GCGCAAGCCGGGGATCGGTCGGGTCCACCTCTGCATGCTACCAATACTGCTATCGCAACCCTCGA
129 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGG
* * ** *
14587506 TCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACCAAACGAGTGGGC
194 TCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACATACGAAACGA------
* *
14587571 GGACGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGT
253 -G-C-G-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
14587636 GGTAGGTGGGTTTAGGCACATCATCATATTTCTACGTGCCAATGCCATTTTTATGGCTTCTAAAT
314 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * * *
14587701 TCATACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTC
379 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * *
14587766 CACGATTTTTGAAACTTTTTGCAGTTCAAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCC
444 CACGATTTTTAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * *
14587831 CAAA-TGTGGTTGTCGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACT
509 CAAACT-TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
14587895 C-ACGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
573 CGA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
14587959 ACTGGCAGTAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGAT
637 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGAT
*
14588023 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACAACC
701 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACC
* * * *
14588088 CCCCGGTACCCCCGATCGTCGGAACCCCAGTGCCACCGGTCAGGTTCT-C-C-A-G---C---GA
765 CCCCAG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGGTGA
* ** * * *
14588143 TGGTGCCCCAACAAAGAAAAATGCAGCACCGGCACATGCCCGAGCCCAGCATGTGCTGCTGCA
829 TGGTGCCCCGATGAAGAAAAATGGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* ** * * *
14588206 ACCCTTGGTCCGGCCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTC
1 ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTC
* * * * *
14588271 TGTGTGCCTAAGTCAACCCACAAAACGAGCGTGCCGGCGCTCAGTCGGCCAGAGGGGCGGGATGC
66 AGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
* * ** * * * *
14588336 ACAAGTCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCGGTC
131 GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
*** * * **
14588401 C-AGTGTGATCTTATACTGGGAATGAACTCCATATGCCGAAGCCAACCGACGAAACGAGCGTGCG
196 CGA-TCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACATACGAAACGAGC--GCG
* ** *
14588465 GGCGGGCACTACGTCGGAGAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGG
258 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * * *
14588530 GTTTAGTCACATCTTCATAATTCTGCGTG-CAATGCCATTTTTATGGCTTGTAAATTCAAACAAT
323 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
14588594 GGTCCCTTAGGCCTTCACGTGAAGTTTTATGGCAAGATGACTTGTTTTCTATTTTTCACGATTTT
388 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * **
14588659 CAAAACTTTTTACGGTTCAGGATTTTGTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGG
453 TAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* * * * *
14588724 TAGACGGGATCCTTGTATTTTTGTTGCCATGCACAAAAAAATTAAGCTAAAAACTCAAAGTGTAC
518 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
14588789 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
583 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
14588854 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCA-AGGTTTGATGAGGGATAGGG
648 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT-AGAGGTTTGATGAGGGATAGGG
* *
14588918 GGCCAATATAAAGGCCAAGTACCAGCACCCATCACACATCATGTGCG--CA-----CA-CCCCCC
712 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCC
** ** * * * * * ** * *
14588975 GATCACCGGAACGTCAATTCCACTGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTATCTCGAC
777 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG-CGATGCTCCGGTGATGGTGCCCCGAT
*
14589040 GAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
841 GAAGAAAAATG-GACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * * * *
14589091 ACCCTCGATCC-AGTCCGATCTTATACT-GGAATGAACTTCGTATGCTTAGACTGGGAATGAACT
1 ACCCTCGGTCCGA-TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACT
* *
14589154 CCA-TATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
65 -CAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGAT
** * * * * * * *
14589218 ATGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATACTGCTACTGTAACCCTCAG
129 GCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGG
* * ** ** *
14589283 TCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGAC
194 TCCGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACATACGAAACGA---G-C
* * * * *
14589348 GGACGGGCGGGCACTATGCCGGGCAAAGAGACGGGATGCGCAAGCTGTGGATTGATAGGGTGGTA
255 -G-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * **
14589413 GGTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTACAGCTTGTAAATTCAT
318 GGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
14589478 ACAATGGTCCCTTAAACCTTCACGTGATGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACG
383 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
** * * *
14589543 ATTTTTAAAACTTTTTATGGTTCAAGATTTTTTTAAATTTTTTCGGAAGTATTTTTGGCCCCAAA
448 ATTTTTAAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
14589608 CTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGGA-AAAAAAATTCAGCTAAAAACTCGAA
513 CTTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
* * *
14589672 GTGTACAAGATTTTGTGGCCACTTGAAAAAAGTGTCCCCATTTCAAGAAACTTTAATGGCTACTG
577 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTG
* *
14589737 GAAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGG
641 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGG
* * * *
14589801 ATAGGGGGCCAATATAACGGCTAAGTACCAGCACCCATCGTACATCATGTGCGTACACCCCC
706 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
14589863 TGGCCGTGTG
Statistics
Matches: 6492, Mismatches: 1093, Indels: 826
0.77 0.13 0.10
Matches are distributed among these distances:
852 70 0.01
853 8 0.00
855 2 0.00
858 10 0.00
859 170 0.03
860 4 0.00
862 4 0.00
863 139 0.02
864 338 0.05
865 71 0.01
866 51 0.01
867 2 0.00
868 1 0.00
869 1 0.00
870 1 0.00
871 4 0.00
872 2 0.00
873 2 0.00
874 50 0.01
875 115 0.02
876 337 0.05
877 138 0.02
878 3 0.00
879 2 0.00
880 2 0.00
881 6 0.00
882 6 0.00
883 2 0.00
884 619 0.10
885 171 0.03
886 3 0.00
887 4 0.00
888 90 0.01
889 855 0.13
890 115 0.02
891 6 0.00
892 119 0.02
893 274 0.04
894 3 0.00
895 2 0.00
896 105 0.02
897 353 0.05
898 63 0.01
899 13 0.00
900 6 0.00
901 18 0.00
902 725 0.11
903 370 0.06
904 45 0.01
905 55 0.01
906 12 0.00
907 10 0.00
908 1 0.00
909 10 0.00
910 8 0.00
911 1 0.00
913 3 0.00
914 2 0.00
915 2 0.00
916 3 0.00
917 54 0.01
918 14 0.00
919 5 0.00
920 3 0.00
921 1 0.00
922 6 0.00
923 10 0.00
924 3 0.00
925 3 0.00
926 10 0.00
927 5 0.00
928 13 0.00
929 12 0.00
930 7 0.00
931 3 0.00
932 5 0.00
933 5 0.00
934 10 0.00
936 2 0.00
937 3 0.00
938 2 0.00
939 6 0.00
941 2 0.00
942 1 0.00
943 1 0.00
944 4 0.00
945 11 0.00
946 2 0.00
947 3 0.00
948 3 0.00
949 4 0.00
950 3 0.00
952 7 0.00
953 6 0.00
954 9 0.00
955 8 0.00
956 4 0.00
957 2 0.00
959 9 0.00
961 2 0.00
962 5 0.00
963 6 0.00
964 10 0.00
965 6 0.00
966 7 0.00
968 3 0.00
969 4 0.00
970 3 0.00
971 3 0.00
972 3 0.00
973 14 0.00
974 4 0.00
975 1 0.00
976 1 0.00
977 2 0.00
979 7 0.00
980 2 0.00
981 3 0.00
982 3 0.00
984 11 0.00
985 4 0.00
986 5 0.00
987 3 0.00
988 7 0.00
989 12 0.00
990 7 0.00
991 9 0.00
992 10 0.00
993 5 0.00
994 2 0.00
995 13 0.00
996 3 0.00
997 3 0.00
998 2 0.00
999 2 0.00
1000 13 0.00
1001 9 0.00
1002 46 0.01
1003 4 0.00
1004 2 0.00
1005 2 0.00
1006 4 0.00
1008 1 0.00
1009 7 0.00
1010 10 0.00
1011 2 0.00
1012 2 0.00
1013 12 0.00
1014 49 0.01
1015 2 0.00
1022 3 0.00
1023 1 0.00
1024 11 0.00
1025 63 0.01
1026 48 0.01
1027 240 0.04
1028 17 0.00
1029 17 0.00
1030 5 0.00
1031 10 0.00
1032 20 0.00
1033 7 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
ACCCTCGGTCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAACTC
AGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
GCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTC
CGATCCAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACATACGAAACGAGCGCGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAA
AACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGCCCCCCGATC
GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGCGATGCTCCGGTGATGGTGCCCCGATGAAGA
AAAATGGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
Found at i:14583696 original size:25 final size:26
Alignment explanation
Indices: 14583653--14583704 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14583643 CAAATCTGAT
*
14583653 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
14583679 CTTAGATT-GGAATGAACTCCGTATG
1 CTTAGATTGGGAATGAACTCCGTATG
14583704 C
1 C
14583705 CTAAGGCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.27, C:0.15, G:0.25, T:0.33
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTCCGTATG
Found at i:14585432 original size:26 final size:26
Alignment explanation
Indices: 14585403--14585455 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14585393 CCGGTCCTAT
14585403 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
14585429 CTTAGACTGTGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14585455 C
1 C
14585456 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.19, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14585625 original size:26 final size:26
Alignment explanation
Indices: 14585588--14585639 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14585578 CCGGTCTAGT
*
14585588 TTAGACTAGGAATGAACTCTGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
*
14585614 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTAGGAATGAACTCCGTATGC
14585640 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCGTATGC
Found at i:14585727 original size:184 final size:185
Alignment explanation
Indices: 14585380--14585798 Score: 605
Period size: 184 Copynumber: 2.3 Consensus size: 185
14585370 CATGTGCTGT
* *
14585380 CGCAACCCTC-GATCCGGTCCTA-TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGTGAAT
1 CGCAACCCTCAG-TCCGGT-CTAGTCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
* *
14585443 GAACTTCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAATCGGCCAGAGGGGCG
64 GAACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCG
* * *
14585508 GGATGCGCAAGCCATGGATCTACCGGGTCCCCCTCTACGTGCTGTCGATCCTACTGC
129 GGATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCCTACTGC
* *
14585565 CGTAACCCTCAGTCCGGTCTAGT-TTAGACTAGGAATGAACTCTGTATGCTTAGACTGGGAATGA
1 CGCAACCCTCAGTCCGGTCTAGTCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
* * *
14585629 ACTCCGTATGCCTAAGTCAACCCACGTAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
66 ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGG
* * * * *
14585694 ATGCGCAAGCCGGGGATCGATCGGGTGCCCCTCTGCGTGCTATCGATCCTGCTGC
131 ATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCCTACTGC
*
14585749 CGCAACCCTCAGTTCGGTCT-GATCTTAGACTGGGAATGAACT-TCGTATGC
1 CGCAACCCTCAGTCCGGTCTAG-TCTTAGACTGGGAATGAACTCT-GTATGC
14585799 CTAAGCCAAC
Statistics
Matches: 209, Mismatches: 20, Indels: 10
0.87 0.08 0.04
Matches are distributed among these distances:
183 1 0.00
184 168 0.80
185 39 0.19
186 1 0.00
ACGTcount: A:0.21, C:0.29, G:0.28, T:0.21
Consensus pattern (185 bp):
CGCAACCCTCAGTCCGGTCTAGTCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGG
ATGCGCAAGCCAGGGATCGACCGGGTCCCCCTCTACGTGCTATCGATCCTACTGC
Found at i:14586469 original size:26 final size:26
Alignment explanation
Indices: 14586430--14586485 Score: 76
Period size: 26 Copynumber: 2.2 Consensus size: 26
14586420 CCGATCCGAT
**
14586430 CTTAGACTGGGAATGAACTCAGCACG
1 CTTAGACTACGAATGAACTCAGCACG
* *
14586456 CTTAGACTACGAATGAACTCCGCATG
1 CTTAGACTACGAATGAACTCAGCACG
14586482 CTTA
1 CTTA
14586486 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.21, T:0.23
Consensus pattern (26 bp):
CTTAGACTACGAATGAACTCAGCACG
Found at i:14587365 original size:26 final size:26
Alignment explanation
Indices: 14587336--14587387 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14587326 TCCGATCTTG
*
14587336 GACTGGAAATGAACTCCGTATGCTTA
1 GACTGGAAATGAACTCCATATGCTTA
*
14587362 GACTGGGAATGAACTCCATATGCTTA
1 GACTGGAAATGAACTCCATATGCTTA
14587388 AGTCAACCCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (26 bp):
GACTGGAAATGAACTCCATATGCTTA
Found at i:14588819 original size:884 final size:884
Alignment explanation
Indices: 14586345--14589862 Score: 4640
Period size: 884 Copynumber: 3.9 Consensus size: 884
14586335 GATGCTTCGA
** *** *
14586345 CGATGGTGCCCCGGTGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCAC
1 CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * **
14586410 AACCCTCGGTCC-GATCCGATCTTAGACTGGGAATGAACT-CAGCACGCTTAGACTACGAATGAA
66 AACCCTCGGTCCAG-TCCGATCTTAGACTGGGAATGAACTCCA-TATGCTTAGACTGGGAATGAA
** * * * ** *
14586473 CTCCGCATGCTTAAGTCAACCCACGAAACGAGCGTACGGGCACTCAATCGTCCAGAGGGGCGGGA
129 CTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* * * * *
14586538 TGCGTAAGCTGGTGATCGATCGGGTCCCCCTCTGCATGCTGCCGATCCTGCTATGACAACCCTCA
194 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATACTGCTATG-CAACCCTCA
** * ** * * *
14586603 GTTTGATCAAATCTTAGACTGGGAATGAACTCTGTATACCTAAGCCAACTGACGAAATGAGCGGG
258 GTCCGATCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGC-GG
* *
14586668 TGGGCAAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCACA-CCATGGATCAATAGG
322 -AGG--A-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA-AGCCATGGATCGATAGG
14586732 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA-TTTTATGGCTTGTAA
382 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
* * *
14586796 ATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTT
447 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTT
* * * *
14586861 TTCACGATTTTCAAAAATTTTTACGGTTGAAGATTTTTCAAAATTTTTTGGAAAGGAGTTTTGGC
512 TTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGC
** * * * *
14586926 ATCAAACTCGGTAGACGTGATCCCTGTATTTTTATTGGCATGGACAAAAAAATTCAGCTAAAAAC
577 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
14586991 TCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCT
642 TCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
**
14587056 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
707 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATG
* *
14587121 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGCACACCCT
772 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* ** *
14587186 CCGGCCCCCCTGATCACCAGAACCCCAATGCCGCCGGTCAGGATCTCCGGCAATGCTCCGG
837 CCGGTCCCCC-GATCGTC-GAACCCCAATGCCACCGGTCAGG---T-------T-CTCCGG
* * * *
14587247 CGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCACGAGCCCAGCATGTGCTGTCGT
1 CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * *
14587312 AACCCTCGGTCTAGTCCGATCTTGGACTGGAAATGAACTCCGTATGCTTAGACTGGGAATGAACT
66 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* * * *
14587377 CCATATGCTTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTTAGCCGGCCAGAAGGGCGGGATG
131 CCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * *
14587442 CGCAAGCCGGGGATCGGTCGGGTCCACCTCTGCATGCTACCAATACTGCTATCGCAACCCTC-GA
196 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATACTGCTAT-GCAACCCTCAG-
* * * *
14587506 TCCGATCCAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACCAAACGAGTGGGC
259 TCCGATCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA----GC
* * *
14587571 GGACGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGT
320 GGA-GGACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
* *
14587636 GGTAGGTGGGTTTAGGCACATCATCATATTTCTACGTGCCAATGCCATTTTTATGGCTTCTAAAT
384 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
* * *
14587701 TCATACAATGGACCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTTTC
449 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTT
** * * *
14587766 CACGATTTTTGAAACTTTTTGCAGTTCAAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCC
514 CACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCC
* * *
14587831 CAAA-TGTGGTTGTCGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACT
579 CAAACT-TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
**
14587895 CACGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
643 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* *
14587960 CTGGCAGTAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
708 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
*
14588025 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACAACCCC
773 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCC
* *
14588090 CCGGTACCCCCGATCGTCGGAACCCCAGTGCCACCGGTCAGGTTCTCCAG
837 CCGGT-CCCCCGATCGTC-GAACCCCAATGCCACCGGTCAGGTTCTCCGG
* * * *
14588140 CGATGGTGCCCCAACAAAGAAAAATGCAGCACCGGCACATGCCCGAGCCCAGCATGTGCTGCTGC
1 CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
14588205 AACCCTTGGTCCGGCCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
66 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
** * * * *
14588270 CTGTGTGCCTAAGTCAACCCACAAAACGAGCGTGCCGGCGCTCAGTCGGCCAGAGGGGCGGGATG
131 CCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* * * * ** * * * *
14588335 CACAAGTCGGGGATCGATCGGGTCCCTCTCTGCGTGCTGTCGATCCTACTGCTGCAACCCTCGGT
196 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATACTGCT-ATGCAACCCTCAGT
* * * * *
14588400 CC-AGTGTGATCTTATACTGGGAATGAACTCCATATGCCGAAGCCAACCGACGAAACGAGC-G-T
260 CCGA-TCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGAG
* **
14588462 G-CGGGCGGGCACTACGTCGGAGAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
324 GACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
* * * *
14588526 GTGGGTTTAGTCACATCTTCATAATTCTGCGTG-CAATGCCATTTTTATGGCTTGTAAATTCAAA
389 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
14588590 CAATGGTCCCTTAGGCCTTCACGTGAAGTTTTATGGCAAGATGACTTGTTTTCTATTTTTCACGA
454 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
* * *
14588655 TTTTCAAAACTTTTTACGGTTCAGGATTTTGTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAAC
519 TTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
* * * *
14588720 TTGGTAGACGGGATCCTTGTATTTTTGTTGCCATGCACAAAAAAATTAAGCTAAAAACTCAAAGT
584 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
14588785 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
649 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
14588850 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
714 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
* * * *
14588915 GGGGGCCAATATAAAGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGATCA
779 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGTCC
* * ** * * * *
14588980 CCGGAACGTC-AATTCCACTGGTCA--GGTTCTCCGATGATGCTCCGG
844 CCCGATCGTCGAACCCCAAT-GCCACCGG---T-C-A-GGTTCTCCGG
** * **
14589025 CGATGGTATCTCGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
1 CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * *
14589090 AACCCTCGATCCAGTCCGATCTTATACT-GGAATGAACTTCGTATGCTTAGACTGGGAATGAACT
66 AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* * *
14589154 CCATATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATA
131 CCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
* ** * * *
14589219 TGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTACCGATACTGCTACTGTAACCCTCAGT
196 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATACTGCTA-TGCAACCCTCAGT
* * * *
14589284 CTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAACGAGCGGACG
260 CCGATCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGA-G
* * * ** *
14589349 GACGGGCGGGCACTATGCCGGGCAAAGAGACGGGATGCGCAAGCTGTGGATTGATAGGGTGGTAG
324 GACGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAG
* * **
14589414 GTGGGTTTAGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTACAGCTTGTAAATTCATA
389 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
14589479 CAATGGTCCCTTAAACCTTCACGTGATGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
454 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
* * * * * *
14589544 TTTTTAAAACTTTTTATGGTTCAAGATTTTTTTAAATTTTTTCGGAAGTATTTTTGGCCCCAAAC
519 TTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
* *
14589609 TTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGGA-AAAAAAATTCAGCTAAAAACTCGAAG
584 TTGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
* * *
14589673 TGTACAAGATTTTGTGGCCACTTGAAAAAAGTGTCCCCATTTCAAGAAACTTTAATGGCTACTGG
648 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-AGACACTTTAATGGCTACTGG
* *
14589738 AAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
712 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGA
* * * *
14589802 TAGGGGGCCAATATAACGGCTAAGTACCAGCACCCATCGTACATCATGTGCGTACACCCCC
777 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
14589863 TGGCCGTGTG
Statistics
Matches: 2306, Mismatches: 276, Indels: 81
0.87 0.10 0.03
Matches are distributed among these distances:
879 2 0.00
880 6 0.00
881 3 0.00
882 10 0.00
883 10 0.00
884 573 0.25
885 176 0.08
886 1 0.00
887 1 0.00
888 84 0.04
889 317 0.14
890 65 0.03
892 1 0.00
893 273 0.12
894 3 0.00
901 3 0.00
902 366 0.16
903 367 0.16
904 34 0.01
905 9 0.00
906 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (884 bp):
CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
AACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
CCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG
CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTACCGATACTGCTATGCAACCCTCAGTC
CGATCTAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGAGGA
CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATT
TTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGTCCCC
CGATCGTCGAACCCCAATGCCACCGGTCAGGTTCTCCGG
Done.