Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 75 of 195
Found at i:14747779 original size:21 final size:21
Alignment explanation
Indices: 14747762--14747810 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
14747752 TTTTTTTGGG
14747762 ATTTTTTTGAGATATTTTAAA
1 ATTTTTTTGAGATATTTTAAA
*
14747783 ATTTTTTTGAGATTTTTTAAA
1 ATTTTTTTGAGATATTTTAAA
14747804 ATTTTTT
1 ATTTTTT
14747811 CGGAAGGATT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.29, C:0.00, G:0.08, T:0.63
Consensus pattern (21 bp):
ATTTTTTTGAGATATTTTAAA
Found at i:14748264 original size:26 final size:26
Alignment explanation
Indices: 14748235--14748287 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14748225 CTGGTCCGAT
* * *
14748235 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14748261 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14748287 C
1 C
14748288 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14749044 original size:26 final size:26
Alignment explanation
Indices: 14749008--14749058 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14748998 CTGGTCCGAT
14749008 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGATTGGGAATGAACTTCGTATG
14749034 CTTAGATTGGGAATGAACTTCGTAT
1 CTTAGATTGGGAATGAACTTCGTAT
14749059 CCCTAAGCTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.12, G:0.25, T:0.35
Consensus pattern (26 bp):
CTTAGATTGGGAATGAACTTCGTATG
Found at i:14749947 original size:26 final size:26
Alignment explanation
Indices: 14749911--14749963 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14749901 CTGGTCTAAT
14749911 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14749937 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14749963 C
1 C
14749964 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14750589 original size:895 final size:900
Alignment explanation
Indices: 14748412--14750644 Score: 3254
Period size: 903 Copynumber: 2.5 Consensus size: 900
14748402 CCTCCATCCT
14748412 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
1 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
14748477 CAATGGTCTCTTAAGCCTTCACGTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTAATGA
66 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * *
14748542 TTTTTAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTTG-CCCCGAA
131 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGAACCC-AA
* * * *
14748606 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAATAACTTGAAG
194 ATTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAG
*
14748671 TGTACAAGATTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGTCTACTGG
259 TGTACAAGA-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
*
14748736 CAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
323 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* * *
14748801 TAGGGGGCCAATAAAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACACCCTCGG
388 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACACCCCCCG
* * *
14748866 CCCCCCCAATCGTCGGAACCCCAATGCCGCCGATCAGGTTCCCTGGCGATGCTCAGGCAATGGTG
453 CCCCCCCAATCGACGGAACCCCAATACCGCCGATCAGGTTCCCTGGCGATGCTCAGACAATGGTG
* *
14748931 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGTGCCCAGCATGTGCTACCACAACCCTCA
518 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCA
* * * *
14748996 GTCTGGTCCGATCTTAGATTGGGAATGAACTTCGTATGCTTAGATTGGGAATGAACTTCGTATCC
583 GTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATCC
*
14749061 CTAAGCTAACCCACGAAACGAGCGTACGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCC
648 CTAAGCTAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * **
14749126 GGGGATTGGTCGGGTCACCCTCTACGTGCTGCCGATGCTACTGCCACAACCCTCGGTCTGATCCA
713 GGGGATCGGTCGGGTCACCCTCTACGTGCTGCCAATCCTACTGCCACAACCCTCGAACTGATCCA
* * *
14749191 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACAAAATGAGAGGGCGGGCGAGCT
778 ACCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGA-GGCGGGC-AGC-
* * * *
14749256 GGCGGGCGCTACACCGGCCAGAAAGATGGGATGCGCAAGCCGTGGATCGACAGGGTGGTAG
840 GGCGGGCACTACACCGGCCAGAAAGACGGGATGCGAAAGCCGTGGATCAACAGGGTGGTAG
* * *
14749317 GTGGGTTTACGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
1 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
14749382 CATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACAACTCG-TTTCTATTTTTCATTA
66 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * * *
14749446 TTTTTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTT-AGCCAAAAC
131 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGAACCCAAA-
*
14749510 TTGGTAGATGTGATCCTTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
195 TTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGT
*
14749575 GTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
260 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
14749640 GCAAACCTATAAAATCCCAAATGCTCTTTAAGGGGATGTGAGTTCTTGAGGTTTGATGAGGGATA
325 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
14749705 GGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGGACAC-CTCCCCCCG
390 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC--ACACACACCCCCCG
* * * *
14749769 CCCCCCCGATCGACGGAACCCCAATACCGCCGGTCAGGTTCTCC-GGCGATGCTCCGACGATGGT
453 CCCCCCCAATCGACGGAACCCCAATACCGCCGATCAGGTTC-CCTGGCGATGCTCAGACAATGGT
* * * * **
14749833 GCCCTGGCGAAGAAAAATGCGGCTCCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC
517 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTC
* * *
14749898 GGTCTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATG
582 AGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATC
* * * * *
14749963 CCTAAG-TCAACCCATGAAATGAGCGTGCGGGCGCTCAGTTGGCCAGAGGGGTGGGATGCGCAAG
647 CCTAAGCT-AACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAG
* * * *
14750027 CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCACAACCTTCAGAAC-G-T
711 CCGGGGATCGGTCGGGTCACCCTCTACGTGCTGCCAATCCTACTGCCACAACCCTC-GAACTGAT
* ** *
14750090 TCGGCCTTAGACTGGGAATGAACTCCGTATGCCTATA-CCAACCCACGAAA-G-GA-GCGGGC-G
775 CCAACCTTAGACTGGGAATGAACTCCGTATGCCTA-AGCCAACCCACAAAATGAGAGGCGGGCAG
* * ** * *
14750150 -GGTGGGCACTACGA-CTGCCAGAGTGACGGGATGCGAAAGCCGTGGATCAATAGGGTGTTAG
839 CGGCGGGCACTAC-ACCGGCCAGAAAGACGGGATGCGAAAGCCGTGGATCAACAGGGTGGTAG
* * * *
14750211 GTGGGTTTAGGAAAATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTATAAATTCATG
1 GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
14750276 CAACGATCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
66 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * *
14750341 TTTTTGAAACCTTTCGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGAACCCAAAT
131 TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGAACCCAAAT
* **
14750406 TGGTAGATGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACGCGAAGTG
196 TGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
*
14750471 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
261 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
14750536 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAAGGATAG
326 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
14750601 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCAT
391 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
14750645 ATTCTCCGAC
Statistics
Matches: 1189, Mismatches: 128, Indels: 32
0.88 0.09 0.02
Matches are distributed among these distances:
894 150 0.13
895 289 0.24
896 7 0.01
898 6 0.01
900 2 0.00
901 1 0.00
902 207 0.17
903 357 0.30
904 65 0.05
905 105 0.09
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (900 bp):
GTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
TTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGAACCCAAAT
TGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACACACACCCCCCGCCC
CCCCAATCGACGGAACCCCAATACCGCCGATCAGGTTCCCTGGCGATGCTCAGACAATGGTGCCC
CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCACAACCCTCAGTC
TGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATCCCTA
AGCTAACCCACGAAACGAGCGTACGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
GATCGGTCGGGTCACCCTCTACGTGCTGCCAATCCTACTGCCACAACCCTCGAACTGATCCAACC
TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCCACAAAATGAGAGGCGGGCAGCGGCGGG
CACTACACCGGCCAGAAAGACGGGATGCGAAAGCCGTGGATCAACAGGGTGGTAG
Found at i:14752543 original size:26 final size:26
Alignment explanation
Indices: 14752514--14752566 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14752504 CTGAATCGAT
*
14752514 CTTAGACT-GGCAATGAACTCTGTATG
1 CTTAGACTAGG-AATGAACTCCGTATG
14752540 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14752566 C
1 C
14752567 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14753029 original size:899 final size:897
Alignment explanation
Indices: 14750750--14756125 Score: 7032
Period size: 893 Copynumber: 6.0 Consensus size: 897
14750740 CTGGTCTGAT
* * * * * *
14750750 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGGGTACGGGTGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * *
14750815 TGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * * * *
14750880 ACCTGCCGCAAACCTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14750945 CCGACGAAAGGAGC--GGGCGGGCGGGCACTACGCCTGCCAGAGTGACGGCATGTGCAAGCCGTG
196 CCGACGAAACGAGCGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
14751008 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
261 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* *
14751073 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAACTTTCATGGCAAGACGACTCA
326 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
*
14751138 TTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-AGTTC-AGGATTTTTTAAAATTTTTTCGGA
391 TTTTCTATTTTTCACGATTTTTAAAACTTTTT-ACAGTTCGA-GATTTTTTAAAATTTTTTCGGA
* * * *
14751201 AGGATTTTTGGCCTCAAACTTGGTATACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
454 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
14751266 TCAGCTAAAAACTCCAAATGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCTTTTCGAAC
519 TCAGCTAAAAACTCCAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
* *
14751331 ACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
14751396 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATA
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC--A
* * * * *
14751461 TGCGCGCACAGCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAAGTTCTCC---
712 TGTGCGCACACCCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGT
* ** *
14751523 ---G----G-CGATGGTGCCCC-AGCAAAGAAAATAT--GAAACCAGCACATGCCCGAGCCCAAG
777 GATGCTCCGACGATGGTGCCCCGA-CGAAGAAAA-ATGCGGCACCAGCACATGCTCGAGCCC-AG
* * * *
14751577 -ATATGCTGCCGCAACCCTCGATCTGGTCTGATCTTACACTGGGAGTGAACTCCATATG
839 CATGTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14751635 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGAGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * **
14751700 CGACCAGAGGGGTGGCATGCGCAAGCCGCGGATCGATCGGGTCCCCCTCTACGTGCTATCGATCC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
14751765 TGCTGTCGCAACCCTCTG-TCTGGTCTGATCTTATACTGGGAATGAACTCAGTATGCCTAAGCCA
131 TGCTGCCACAACCCTC-GATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
14751829 ACCGACGAAACGAGCGGGCAGGCGGGCGGGTGGGCACTACGCCGGCCAGAGAGACGGGATGTGCA
195 ACCGACGAAACGAGCGGG--GGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
14751894 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACATCTTCATATTTCTGCATGCCAATGCC
254 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* *
14751959 ATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGA
319 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* *
14752024 CGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-AGTTC-AGGATTTTTTTAAATTT
384 CGACTCATTTTCTATTTTTCACGATTTTTAAAACTTTTT-ACAGTTCGA-GATTTTTTAAAATTT
* * **
14752087 TTTCGAAAGGAGTTTTGGCGCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACA
447 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACA
* *
14752152 AAAAAATTCAGCTAAAAGCTCCAAATGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
512 AAAAAATTCAGCTAAAAACTCCAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * *
14752217 TTCAAACACTTTAATGGCTACTGGCGGCAAACCTGTAAAACCTCAAATGCTCTTTAAGGGGGTGC
577 TTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
14752282 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-CACCCATTGCA
642 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
14752346 CATCATGTGCGAACATCTCCCCCCTGCCCCCCCGATCGACGGAACCCCAATGCCGCCGGTCAGGT
707 CATCATGTGCGCACA-C-CCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * *
14752411 TCTCCGGTGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCTCCAGCACATGCTCGAG
769 TCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAG
* ** * * * *
14752476 CCCAACATGTGCTGCCATAACCCTCAATCTGAATC-GATCTTAGACTGGCAATGAACTCTGTATG
834 CCCAGCATGTGCTGCCGCAACCCTCGATCTG-GTCTGATCTTAGACTGGGAATGAACTCCGTATG
* ** ** **
14752540 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTTTGGGCATTCATT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * *
14752605 TGGCCAGAAGGGTGGGATGCGCAAGCTGGGGATCGATCGGGTCCCCCTCTACGTGCTGCCGATCC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14752670 TGCTGCCTCAACCCTC-AGTTTGGTCTGATCTTAGGCTGGGAATGAACTCTGTATGCCTACGCCA
131 TGCTGCCACAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* *
14752734 ACTGACGAAACGAGCGGGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGT
195 ACCGACGAAACGAGCGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
* * *
14752799 CGATGGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* *
14752864 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTGAACTTTCATGGCAAGACGACTC
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
14752929 GTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAACTTTTTCGGAA
390 ATTTTCTATTTTTCACGATTTTTAAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAA
14752994 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
455 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
14753059 CAGCTAAAAACT-CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
520 CAGCTAAAAACTCCAAA-TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
* * *
14753123 ACTTTAATGGCTACTGGCGGCAAACCTGTAAAATCTCAAACGCTGTTTAAGGGGGTGTGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
14753188 CAAGGTTAGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCA-CACCCACCACACATCATG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * ** * **
14753251 TGTGCACA-CCCCCCGGACCCCTGATCACCGGAACCCCAATGCCGCTGGTCAGGTTCTCCGACGA
714 TGCGCACACCCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGA
* * * * * *
14753315 TGCTCCGACGATGGTGCCCCGGCAAAGAAAAATGCAGCGCCAGCACATGCTCGAGCCCAGTATAT
779 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
* * * *
14753380 GCTGCCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCGGTATG
844 GCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * * *
14753434 CTTAGACTGGGAATGAAGTCCGTATGCCTATGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * * * *
14753499 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCAGGTCCCTCTCTGTGTACTGCCGAGCT
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * * *
14753564 TGCGGCCACAACCCTCTATCTGGTCCAATCTTAGACTGGGAATGAACTCCATATGCCTACGTCAA
131 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14753629 CCGATGAAACGAGC--GGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGATGCTCAAGCCGCT
196 CCGACGAAACGAGCGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG-T
* *
14753692 -GATCGATAGGCTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTC
260 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTT
* * * *
14753756 ATGGCCTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGGCGACTC
325 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
14753821 ATTTTCTATTTTTCACGATTTTCAAAACATTTTATAGTTCGAGATTTTTTAAAATTTTTTTGGAA
390 ATTTTCTATTTTTCACGATTTTTAAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * * *
14753886 GGAGTTTCGGCCCCCAAACTTGGTAAACATGATCCTTGTATTTTTATTGGCATGGACAAAAAAAT
455 GGAGTTTTGG-CCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * * * *
14753951 TCAGCAAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCACTTCAGAC
519 TCAGCTAAAAACTCCAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAAC
* * * *
14754016 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATTTGAAATGCTCTTTAAAGGGGTGCGAGTTCT
584 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
14754081 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCTTG
649 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * *** *
14754146 TGTGGACACCCCCCTCGGCTCCCTCGATCGTCGGAACCCCAATGCCATTGGTCAGGTTCTCCGAT
714 TGCGCACACCCCCC-C-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGT
* * * *
14754211 GATGCTCCGGCGATGGTGCCTCGACGAAGAAAAATGTGGCCCCAGCACATGCTCGAGCCCAGCAT
777 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCAT
* * * *
14754276 GTGCTGCCGTAACCCTCGGTCTGGTCTGATATTAGATTGGGAATGAACTCCGTATG
842 GTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14754332 CTTAGACTAGGAATGAACTCCGTATGCCCAAGTCAACCCATGAAACAAGCGTACGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * * * * *
14754397 CGGCCAGAGGGGCGGGATTCGCAAGCCAGGGATCGGTCGGGTCCCCCTCTGCATGCTACCAATCG
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * **
14754462 TGCTACCACAACCCTCGATCCGATCTGATCTTGGACTGGAAATGAACTCCGTACACCTAAGCCAA
131 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14754527 CCGACG-AACGAGCTGGCGGGCGGGCGGGCAGTAAGCCAGCCAGAGAGACGGCATGCGCAAGCCG
196 CCGACGAAACGAGC-GG-GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
14754591 TGGATCGATAGTGTGGTAGGTGGGTTTAGGCATATCTTCATATTTCTGTGTGCCAATGCCATTTT
259 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * *
14754656 TATGGCTTGAAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGATGACT
324 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * ** * *
14754721 CGTTTTCTATTTTTCATGAATCTCGAAAATTTTTTACGGTTCGAGATTTTTTAAAATTTTTAT-G
389 CATTTTCTATTTTTCACG-ATTTTTAAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTT-TCG
* * *
14754785 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCGTACACAAAACA
452 GAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
** * * *
14754850 ATTCAGCTAAAAACTCGGACTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAG
517 ATTCAGCTAAAAACTCCAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAA
* *
14754915 ACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTT
582 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
14754980 CTCGAGGTTTGATGAGGGAAAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCA
647 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
14755045 TGTGCGCACACTCACCCCCCAGCCCCCCCGATCGTCGGAACCCCAAT---GCC-GTC-GG--C-C
712 TGTGCGCACA--C-CCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* * *
14755102 AGGT--T-CTCCGACGATGGTGCCCCGACGAAG-AAAATGCGACACCAGCACATGCCCGAGCCCA
773 CGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCA
* * * * *
14755163 GCATTTGCTGTCGCAACACTC-A----GTCCGGTC-----C--------AA-TCC-TA-G
838 GCATGTGCTGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
** *
14755202 CTT-G----GGAATGAACTCTATATGCCTAAGTCAACCCACGAAACGAGTGTACGGGCGCTCAGC
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
* * * ** *
14755262 CGACGAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTTTGCGTAATGTCGATCC
66 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * *
14755327 TGCTGCTGCAACCCTTGATCGGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14755392 CCGATGAAAC-AG-GCGGGCAGGCGGGCACTACGCCGGCCAGAGAGAGGGGATGCGCAAGCCGTG
196 CCGACGAAACGAGCGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
* **
14755455 GATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
261 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
* * *
14755520 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGCGTGAAGTTTCATGGCAAGATGACTCG
326 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
* * * * *
14755585 TTTTCTATTTTTCAAGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
391 TTTTCTATTTTTCACGATTTTTAAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* * * * * *
14755650 GATTTTTGGCCCCAAACTTGGTAGACGTGATCTTTGTGTTTTTGTTGGCTTGCATAAAAAAATTC
456 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
** * *
14755715 AGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
521 AGCTAAAAACTCCAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
*
14755780 TTTAATGGCTACCGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
586 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * *
14755845 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATTGCACATCTTGTG
651 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * *
14755910 CGCACACCCCCCCGGCCCCCCCGATCTTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
716 CGCACACCCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
** * * *
14755975 GCTCCGACGATGGTGTGCCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCGGCATGTC
780 GCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTG
* * * *
14756040 CTGCCGTAACCCTCGGT-TCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
845 CTGCCGCAACCCTCGATCT-GGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
14756093 CTTAGACTGGGAATGAACTCCGTATGCCTAAGT
1 CTTAGACTAGGAATGAACTCCGTATGCCTAAGT
14756126 GTACAAGATT
Statistics
Matches: 3939, Mismatches: 459, Indels: 175
0.86 0.10 0.04
Matches are distributed among these distances:
858 31 0.01
859 1 0.00
860 1 0.00
861 289 0.07
862 186 0.05
863 3 0.00
865 165 0.04
866 6 0.00
868 1 0.00
869 23 0.01
870 48 0.01
871 2 0.00
872 3 0.00
873 2 0.00
875 7 0.00
880 1 0.00
885 182 0.05
886 6 0.00
887 1 0.00
888 2 0.00
889 10 0.00
890 11 0.00
891 48 0.01
892 273 0.07
893 681 0.17
894 341 0.09
895 32 0.01
896 28 0.01
897 8 0.00
898 363 0.09
899 414 0.11
900 2 0.00
901 406 0.10
902 48 0.01
903 37 0.01
904 25 0.01
905 250 0.06
906 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTCAGC
CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
TTTTCTATTTTTCACGATTTTTAAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGGAAG
GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCCAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGC
TGCCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14753437 original size:26 final size:26
Alignment explanation
Indices: 14753408--14753460 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14753398 CCGGTCTGAT
*
14753408 CTTAGACTGGGAATGAACTCGGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14753434 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14753460 C
1 C
14753461 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14756096 original size:26 final size:26
Alignment explanation
Indices: 14756067--14756119 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14756057 TCGGTCCGAT
14756067 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14756093 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14756119 C
1 C
14756120 CTAAGTGTAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14758731 original size:26 final size:26
Alignment explanation
Indices: 14758695--14758747 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14758685 CCAGTCCGAT
* *
14758695 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14758721 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14758747 C
1 C
14758748 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14760319 original size:26 final size:26
Alignment explanation
Indices: 14760290--14760342 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14760280 CCAGTCCAAT
14760290 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
* *
14760316 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14760342 C
1 C
14760343 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14761997 original size:26 final size:26
Alignment explanation
Indices: 14761968--14762020 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14761958 CCGGTCCAAT
*
14761968 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
*
14761994 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
14762020 C
1 C
14762021 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:14762899 original size:26 final size:26
Alignment explanation
Indices: 14762870--14762922 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14762860 CTGATCCGAT
*
14762870 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
* *
14762896 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
14762922 C
1 C
14762923 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:14763055 original size:902 final size:897
Alignment explanation
Indices: 14761096--14764987 Score: 5097
Period size: 902 Copynumber: 4.4 Consensus size: 897
14761086 CCTATCCGAT
*
14761096 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTG-TGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
14761160 CGGCCAGAGGGGCAGGG-TG-GCAAGCCGGGGATCGGCCGTGTCCCCCTCAGCGTGCTGTCGATC
66 CGGCCAGAGGGGC-GGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTC-TCGTGCTGT-GATC
* * * * * ** * *
14761223 CTACTGCGGCAACCCTCGGTCTGGTCTAATCTTAAACTGGGAATGAACTCCGTACGCCTAAGCCA
128 CTGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
14761288 ACCGATG--AAA-CGAGCGGACAGGCGGGCGGGCACTACGTCGGCCAGAGATACGGGATGCGCAA
193 ACCGATGAAAAAGCGGGCGG-CGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * * *
14761350 ACCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCGTGCCAATGCCA
*
14761415 TTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
14761480 GACACGTTTTTTATTTTTTAAGATTTTTGAAACTTTATGCGGTTTGGGATTTTTTAAAATTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
14761545 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGAAC-TGATCCTTGTATTTTTGTTGGCATGCACAAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAG-ACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
14761609 AAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCG-TT
516 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCGATT
* * * *
14761673 TCAGACGCTTTAATGGTTACTGGCAGCAAACCTGTAAAATCTCAATTGCTCTTTAATGCGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTG
* *
14761738 AGTTCTTGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
645 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* *
14761803 ATTATGTGCGCACACCCCCCCGGCCACCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
710 ATCATGTGCGCA-TCCCCCCCGGCC-CCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
** * * **
14761868 CCGGTGATGCTCTGACGATGGTGACCCGATGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCC
773 CCGACGATGCTCCGACGATGGTGACCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCC
** * * * *
14761933 AGCATGCACTGCTGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCATATG
838 AGCATGTGCTGCCGCAACCCTCGGT-TGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14761994 CTTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGCGCACTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** *
14762059 CGGCCAGAGGGGCGAGATGCGCAAGCCAGAGATCGGCTAGGTCCCCCTCTACGTGTTGTTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT-CGTGCTG-TGATCC
* * * * *
14762124 TGCTGCCGTAACCTTC-AGTCC-AGTCCGATCTGAGAGTGGGAATGAACTCCATATGCCTAAGCC
129 TGCTGCCGCAACCCTCGA-TCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* *
14762187 AACCGATGAAATAAGCGGGCTGGCGGGCGGGCGGGCACTACATCGGCCAGAGAGACGGGATGTGC
192 AACCGATGAAA-AAGCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGC
* * * *
14762252 AAGCCATGGATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCCTTCCAATGC
255 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCGTGCCAATGC
*
14762317 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAG
320 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
14762382 ATGACTCGTTTTCTATTTTTCATGA-TTTTGAAACTTTTTTCGGTTCGGGATTTTTT-AAATTTT
385 ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
** * *
14762445 TTCGGAAGGAGTTTTGGCCCCAAACTTCTTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAA
450 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* * * *
14762510 AAAAATTCGGCTAAAAATTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCGAT
515 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCGAT
* * * *
14762575 TTTATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGTGCTGT
580 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGT
*
14762640 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGTCCAAGTACCAGCACCCATCGCA
644 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
14762705 CATCATGTGCGCATCCCCCCCGGCCCCCTCGATCGCTGGAAGCCCAATGCTG-CTGGTCAGGTTC
709 CATCATGTGCGCATCCCCCCCGGCCCCC-CGATCGCCGGAACCCCAATGCCGTC-GGTCAGGTTC
* * * * ** * *
14762769 TCCGGCGATGAC-CCGATGATGGTGACCTGGCGAAGAAAAATGTGGCACGAGCACATGCCCGAGC
772 TCCGACGATG-CTCCGACGATGGTGACCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGC
* * *
14762833 CCAGCATGTGCTGCCACAACCCTCGGTCTGATCCGATCTTAGAATGGGAATGAACTCCGTATG
836 CCAGCATGTGCTGCCGCAACCCTCGGT-TGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14762896 CTTAGACTAGGAATGAACTTCGTATGCCTACGTCAACCCACGAAACAAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
14762961 TGACCAGAGGGGCGGGATGCGCAAGCGGGGGATCGGTCGGGTCCCCCTCTCTGTGCTGCTGATCA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTC-GTGCTG-TGATCC
* * * *
14763026 TGCTGCTGCAACCCTTGATCCGATCCGATCCTAAACTGGGAATGAACTCCGTATGCCTAAGCCAA
129 TGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14763091 CCAACG--AAA-C--G-AGCGGACGGGCGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGC
194 CCGATGAAAAAGCGGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGC
* *
14763150 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
259 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCGTGCCAATGCCATT
* *
14763215 TTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCACATGAAGTTTCAT-GCAAGACGA
324 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
14763279 CTCGATTTCTATTTTTCACGATTTTTGAAACCTTTTGCGATTCGGGATTTTTTAAAATTTTTTCG
389 CTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCG
*
14763344 GAAGGAGTTTTGGCCCCAAA-TTGGTAGACGTGATCCATGTATTTTTGTTGGCATGCACAAAAAA
454 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* ** *
14763408 ATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCAAATCAAAAAAGTGT-CCCTATTTCA
519 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCGATTTCA
*
14763472 GACACTTTAATGGCTACTGGCTGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
584 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGT
**
14763537 TCTCGAGGTTTGATGACAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
648 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * *
14763602 ATGTGCGTA-CACCCCCTGGCCCCCCGATCACTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
713 ATGTGCGCATC-CCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGA
* ** *
14763666 CGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAATACGGCACCAGCATATGCTCGAGCCCAGCA
777 CGATGCTCCGACGATGGTGACCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCA
*
14763731 TGTGCTACCGCAA-CC-C--TT-G---G---TT---C--GG--T----T-CG-AT-
842 TGTGCTGCCGCAACCCTCGGTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14763762 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTACGGGCACTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
14763827 CGGCAAGAGGGGCGAGATGCGCAAGCCGAGGACCGGCCGGGTCCTCCTCTATGTGCTGCTGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT-CGTGCTG-TGATCC
* ** ** *
14763892 TGTTGCCGCAACCCTCGATTTGGGCCGATCTTAGACTGGGAATGAACACCGTATGCCTAAGCCAA
129 TGCTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14763957 CCGATG--AAA-CGAGCGG-GTTGGCGGGCAGGCACTACGTCGGCTAGAGAGACGGGATGTGCAA
194 CCGATGAAAAAGCGGGCGGCG--GGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
* * **
14764018 GCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA
257 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCGTGCCAATGCCA
* * *
14764083 TTTTTATGGCTTGTAAATTCATACAATGGTCTCTTAAGCTTTCACGTGAAGTTTCATGGCAAGAT
322 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14764148 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTT-AAACTTTTT
387 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * ** * *
14764212 CAGAAGAATTTTTTACCCTAAACTTGGTCGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
452 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
14764277 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCC-ATTT
517 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCGATTT
*
14764341 CAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
* * ** *
14764406 GTTCTTGAGGTTTGATGAGGGTTAGGGGATCAATATAAGGGCCAACTACCAGCACCCATCGCACA
646 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
14764471 TCATGTGCACATACCCCCCCCGGCGCCCCCGATCGCCAGAACCCCAATGCTGCCGGTCAAGTTCT
711 TCATGTGCGCAT--CCCCCCCGGC-CCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCT
* *
14764536 CCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCC
773 CCGACGATGCTCCGACGATGGTGACCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCC
* * *
14764601 AGCATGAGCTGCTGCAACCCTCGGTTCGGTCCGATCTTAGACTAGGAATGAACTCCGTATG
838 AGCATGTGCTGCCGCAACCCTCGGTT-GGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
14764662 CTTAGACTGGGAATGAACTCCGTATGCCTAAATCAACCCACGAAACGAGTGTGCGGGCGCTTAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14764727 CGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGGTTCCCCCTCTGCGTGCTGTCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCT-CGTGCTGT-GATCC
* * * *
14764792 TGCTGCCGCAACCCTCG-GCCCAGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCA
129 TGCTGCCGCAACCCTCGATCCGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
14764856 ACCGACGAAACGAGCTGGCAGGCGGACGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGCA
193 ACCGATGAAA-AAGCGGGC-GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
* * *
14764921 TGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAACGCC
256 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCGTGCCAATGCC
14764986 AT
321 AT
14764988 GTAAGGGCCA
Statistics
Matches: 2607, Mismatches: 313, Indels: 142
0.85 0.10 0.05
Matches are distributed among these distances:
866 172 0.07
867 2 0.00
868 4 0.00
869 2 0.00
870 178 0.07
871 280 0.11
872 3 0.00
873 9 0.00
874 110 0.04
875 4 0.00
876 1 0.00
878 2 0.00
880 3 0.00
883 2 0.00
886 2 0.00
887 1 0.00
888 1 0.00
889 1 0.00
890 1 0.00
891 5 0.00
892 100 0.04
893 177 0.07
894 270 0.10
895 31 0.01
896 1 0.00
897 1 0.00
898 57 0.02
899 28 0.01
900 260 0.10
901 7 0.00
902 440 0.17
903 164 0.06
904 283 0.11
905 4 0.00
906 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.25
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTCGTGCTGTGATCCTG
CTGCCGCAACCCTCGATCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
GATGAAAAAGCGGGCGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCGATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCT
CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
TGCGCATCCCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGAT
GCTCCGACGATGGTGACCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14764665 original size:26 final size:26
Alignment explanation
Indices: 14764636--14764688 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14764626 TCGGTCCGAT
14764636 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
14764662 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14764688 C
1 C
14764689 CTAAATCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14766807 original size:26 final size:26
Alignment explanation
Indices: 14766778--14766830 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14766768 TCGATCCGAT
* *
14766778 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
14766804 CTTAGACTAGGAACGAACTCCGTATG
1 CTTAGACTAGGAACGAACTCCGTATG
14766830 C
1 C
14766831 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTAGGAACGAACTCCGTATG
Found at i:14768417 original size:26 final size:26
Alignment explanation
Indices: 14768388--14768440 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14768378 CCGGTCCGAT
14768388 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14768414 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14768440 C
1 C
14768441 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14770315 original size:710 final size:710
Alignment explanation
Indices: 14768565--14770555 Score: 2925
Period size: 710 Copynumber: 2.8 Consensus size: 710
14768555 CCCTCCATCT
** *
14768565 AGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGAGCGGGCGGG
1 AGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGGGCGGG
* * * * *
14768630 CGGGCACTACGCCGGCCAGAGAGACGAGATACGTAAGCCGTGGATTGATGGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * ** *
14768695 TAAGGCACATCTTCATATATCTATGTGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
14768760 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTGG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
14768825 AAACTTTTTGCGATTCGGGA-TTTTTTAATATTTTTTTGGAATGAGTTTTGGCCCCAAACTTGGT
261 AAACTTTTTGC-ATTTGAGATTTTTTTAA-ATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGT
* * * * *
14768889 CA-ACATGATCTTTGTATTTTTTTTGGTATGCACAGAAAAATTCAGCTAAAAACTCGAAGTGTAC
324 -AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTAC
* * *
14768953 AAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCGGACACTTTAATGGTTACTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
14769018 ACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
14769083 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCAGATCACGTGCGCACACCACCCCCGGCCCCA
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCAGCCCCA
* * * **
14769148 TCGATCATCGGAACCCCAATGCCACCGGTTAGGTTCTCCAACGATGCTCCGACGATGGTGCCCCG
582 CCAATCATCGGAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCCGACGACAGTGCCCCG
* * *
14769213 GCAAAGAAAAATATGGCACCAGCACATTCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCC
647 GCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTGGTCC
* * *
14769277 GGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG-CAACCTACAAAATGAGCGAGCGG
1 AGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAT----GAGCGG
*
14769340 GCGGGCGGGCGAGCAATACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATAGGGTGG
61 GCGGGCGGGC-A-C--TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
14769405 TAGGTGGGTTTAGGCAAATCTTCATATTTCTTCATGCCAGTGCCATTTTTATGGCCTGTAAATTC
122 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
14769470 ATACAGTGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAATTTTCA
187 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* ** * * *
14769535 CGATTTTTGAAACTTTTTGAAGATCAGGATTTTTTTAAATTTTTTCGGAAAGCATTTTT-TCCCC
252 CGATTTTTGAAACTTTTTGCATTTGA-GATTTTTTTAAATTTTTTCGG-AAGGATTTTTGGCCCC
*
14769599 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAACCTCG
315 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCG
* **
14769664 AAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCTAATTTCAGACACTTTAATGGCTACT
380 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
14769729 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGG
445 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCGAGGTTTGATGAGG
* *
14769794 GATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTGCTCACA-C-CCCC
509 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCC
* * * **
14769857 CAGCCCCCCCAATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTTTGACGACA
574 CAGCCCCACCAATCATCGGAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCCGACGACA
** * * * *
14769922 GTGCCCCGGTGAAGAAAAATACGGCACCAGCACGTGCCTGAGCCCAGCATGTGCTATCGTAACCC
639 GTGCCCCGGCAAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
14769987 TTGGTCC
704 TTGGTCC
* *
14769994 AGTCTGATCTTAGACAAGGAATGAACTCCGTATTCCTAAGCCAACCGACAAAATGAGCGGGCGGG
1 AGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGGGCGGG
* * *
14770059 CGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATTGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
14770124 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
14770189 TCCCTGAAGCCTTCACGTGAAGTTGCATGGTAAGACGACTCGTTTTCTATTTTTGACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
*
14770254 AAACTTTATGCATTTTGAGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTGCA-TTTGAGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTA
* * *
14770319 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTTAGCTAAAAACTCAAAGTGTACAA
325 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAA
* *
14770384 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCGAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
14770449 TTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
14770514 CAATATAAGGGCTAAGAACCAACACCCATCGCACATCATGTG
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
14770556 TGCAGACCCC
Statistics
Matches: 1146, Mismatches: 114, Indels: 40
0.88 0.09 0.03
Matches are distributed among these distances:
709 9 0.01
710 435 0.38
711 16 0.01
712 37 0.03
713 1 0.00
714 16 0.01
715 16 0.01
716 1 0.00
717 156 0.14
718 19 0.02
719 425 0.37
720 15 0.01
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (710 bp):
AGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAATGAGCGGGCGGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
AAACTTTTTGCATTTGAGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCCCAGCCCCACCAA
TCATCGGAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGCTCCGACGACAGTGCCCCGGCAA
AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTGGTCC
Found at i:14771519 original size:26 final size:26
Alignment explanation
Indices: 14771490--14771542 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14771480 CCGGTCCAAT
*
14771490 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14771516 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14771542 C
1 C
14771543 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14771736 original size:8 final size:8
Alignment explanation
Indices: 14771723--14771752 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
14771713 GATGAAATAA
14771723 GCGGGCTG
1 GCGGGCTG
14771731 GCGGGCTG
1 GCGGGCTG
*
14771739 GCGGGCGG
1 GCGGGCTG
14771747 GCGGGC
1 GCGGGC
14771753 ACTACGCCGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.00, C:0.27, G:0.67, T:0.07
Consensus pattern (8 bp):
GCGGGCTG
Found at i:14772429 original size:26 final size:26
Alignment explanation
Indices: 14772400--14772452 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14772390 CCGATCCGAT
*
14772400 CTTAGAATGGGAATGAACTCCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
* *
14772426 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGAATAGGAATGAACTCCGTATG
14772452 C
1 C
14772453 CTACGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGAATAGGAATGAACTCCGTATG
Found at i:14775837 original size:26 final size:26
Alignment explanation
Indices: 14775808--14775860 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14775798 TCGATCCGAT
*
14775808 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14775834 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14775860 C
1 C
14775861 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14776023 original size:737 final size:719
Alignment explanation
Indices: 14774377--14776569 Score: 2635
Period size: 737 Copynumber: 3.0 Consensus size: 719
14774367 TCATAGATTG
*
14774377 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCAGGCGGGCACTACG-C
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCAGGC-GG--GG-GGGCACTACGTC
* * * *
14774441 TGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATGGGGTGGTAGGTGTGTTTAGGCACATCT
61 -GGCCAGAGAGACGGGAT--GCTAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
14774506 TCATATTTCTGCCTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCT
123 TCATATTTTTG-CTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
14774571 TCACGTGAAGTTTCATGGCAAGATGACTCATTTCTATTTTTCACGATTTTTCAAAACTTTTTGCG
187 TCACGTGAAGTTTCATGGCAAGATGACTCTTTTCTATTTTTCATGATTTTT-GAAACTTTTTGCG
* *
14774636 GTTCGGGATTTTTTAAAATTGTTTCGGAAGGAGTTTT-GTCCCCAAACTTGGTAGACGTGTTCCT
251 GTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-TTTTGGT-CCCAAACTTGGTAGACGTGATCCT
* *
14774700 TGTA-TTTTGTT-GCATGCAGAAAAAATTCAGCTAAAAAAGCGAAGTGTACAAGATTTTGTGGAC
314 TGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGT-GA-
14774763 CCATTTG-AAAAAGTG-CCCCATTTCAGAACACTTTAATGGCTACTGGCAGCCAAAACCTTGTAA
377 CCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAG-C-AAACC-TGTAA
** * *
14774826 AATCTC-AATGCTCTTTAAGGAAGTGTGTGTTTATCTGAGGTTTGATGACGGGATAGGGGGCCAA
438 AATCTCAAATGCTCTTTAAGGGGGTGTGAG-TTCTC-GAGGTTTGATGA-GGGATAGGGGGCCAA
* * *
14774890 TATAAGGGCCAATTACCAAGCA-CCATCGCCACATCATGTGCGGCACACCCCCCCGGGCCCCCCC
500 TATAAGGGCCAAGTACC-AGCACCCATC-ACACATCATGTGC-GCACA-CCCCCC--GACCCCCC
* * * * * * * *
14774954 CAAATCGCCGGCACCGCCAATGCCGCCGGTCAGG-TCTCCTGCGATGCTCTGGCGATGGTAACCC
559 C-GATCGCCGGAACC-CCAATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGT-GCCC
* * *
14775018 GCCGAAGAAAATGCGGCACCAGCACACTGCCCGAGCCCAGCATGTGCTGCTGTAACCTTTCGGTC
621 GACGAAGAAAATGCGGCACCAGCACA-TGCCCGAGCCCAGCATGTGCTGCTGCAACC-CTCGGTC
* *
14775083 TGTCTGATCTTCGACTGGG--TGATACATCCGTATGCC
684 TGTCCGATCTTAGACTGGGAATGA-AC-TCCGTATGCC
* * * * * **
14775119 ---AT-AA-GCC--A--ACTGA-CCAA---ACG-AAGGGCACGCGGGCGGACCACTACGTCGGCC
1 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCAGGCGGG-GGGGCACTACGTCGGCC
* * *
14775170 AGAGAGACCGGGATGCTTAATCCATGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCAT
65 AGAGAGA-CGGGATGC-T-AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
*
14775235 ATTTCTATG-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCATCA
127 ATTT-T-TGCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * *
14775299 CGTGAAGTTTCATGGCAAGATGACTCGTTTTCTGTTTGTCATGATTTTTGAAACTTTTTGGGGTT
190 CGTGAAGTTTCATGGCAAGATGACTC-TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
** * *
14775364 CAAGATTTTTTAAAATTTTTTC-AAATGGATTTTTGGTCCCAAACTTGGTAGACGTGATCCCTGT
254 CGGGATTTTTTAAAATTTTTTCGGAA-GGA-TTTTGGTCCCAAACTTGGTAGACGTGATCCTTGT
*
14775428 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAATTCGAAGTGTACAAGATTTTGTGACCAT
317 ATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCAT
* *
14775493 TTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTATAAAATCTCAA
381 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* *
14775558 ATGCTATTTAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGGCCAATATAAGGGCC
446 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGGCCAATATAAGGGCC
* * *
14775623 AAGTACCAGCACCCATCACAAATGATGTGCGCACACCCCCCGACCCCCCCGATCGCCGGAACCCT
510 AAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCCCGATCGCCGGAACCCC
* * **
14775688 AATGTCGTCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTGCCCTGACGAAGAGAAATACAAC
575 AATGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC-GACGAAGA-AAATGCGGC
* *
14775753 ACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAACCCTCGGT-TCGATCCGATCTTAGACTG
638 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCT-G-TCCGATCTTAGACTG
14775817 GGAATGAACTCCGTATGCTTAGAC
701 GGAATGAACTCCGTATGC-----C
*
14775841 TAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTAGGCGGGGGGGCACTACGTCGG
1 --GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCAGGCGGGGGGGCACTACGTCGG
* * *
14775906 CCTGAGAGACGGGATAAGCTAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACGTCTTCA
63 CCAGAGAGACGGGAT--GCTAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
14775971 TATTTTTGCATGCCAATGCCATTTTTATCGATTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
126 TATTTTTGC-TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * *
14776036 CATTAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT
190 CGTGAAGTTTCATGGCAAGATGACT-CTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
* * * *
14776101 CGGGATTTTTTAAAAATTATTCGGAAGGCATTTTGGCCCCAAACATGGTAGACGTGATCCTTGTA
254 CGGGATTTTTTAAAATTTTTTCGGAAGG-ATTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTA
* * * * *
14776166 TTTTTGGTGGCACGCATAAAAAAATTAAGCTAAAAACTCGAAGTGTAGAAGATTTTGTGACCATT
318 TTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATT
* *
14776231 TGAAGAAAGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
382 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
* *
14776296 TGCTCTTTAAGGGGGTG-GAGTTCTCGAGGTTTGATGAGTGATAGGGGGCCGATATAAGGGCCAA
447 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * *
14776360 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATCGTCGAAACCCCAA
512 GTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGACCCCCCCGATCGCCGGAACCCCAA
* * * * * * *
14776425 TGTCATTGGTCAGGTTCTCTGGCGATGCTCCGATGATTGAGCCCCAGCGAAGAAAAATGCGGCAC
577 TGTCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCGA-CGAAG-AAAATGCGGCAC
* * * *
14776490 CAGCACATGCCCAAGCTCAGCATGTGCTACTGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGA
640 CAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCT-GTCCGATCTTAGACTGGGA
*
14776555 ATGAACTTCGTATGC
704 ATGAACTCCGTATGC
14776570 GTAAGTCAAC
Statistics
Matches: 1254, Mismatches: 140, Indels: 121
0.83 0.09 0.08
Matches are distributed among these distances:
715 1 0.00
716 24 0.02
717 90 0.07
718 25 0.02
719 3 0.00
720 6 0.00
721 5 0.00
722 21 0.02
723 44 0.04
724 36 0.03
725 220 0.18
726 37 0.03
727 47 0.04
728 53 0.04
729 5 0.00
731 1 0.00
732 4 0.00
733 6 0.00
734 5 0.00
735 199 0.16
736 29 0.02
737 351 0.28
738 30 0.02
739 12 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (719 bp):
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCAGGCGGGGGGGCACTACGTCGGCCA
GAGAGACGGGATGCTAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
TTGCTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGATGACTCTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATT
TTTTAAAATTTTTTCGGAAGGATTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTT
GGCATGCAAAAAAAATTCAGCTAAAAAATCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCACACATCATGTGCGCACACCCCCCGACCCCCCCGATCGCCGGAACCCCAATGTCGTCGG
TCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCGACGAAGAAAATGCGGCACCAGCACATGCC
CGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGTCCGATCTTAGACTGGGAATGAACTCCGTA
TGCC
Found at i:14777438 original size:26 final size:26
Alignment explanation
Indices: 14777409--14777461 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14777399 CCGGTCCGAT
*
14777409 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14777435 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14777461 C
1 C
14777462 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14778341 original size:26 final size:26
Alignment explanation
Indices: 14778305--14778357 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14778295 TCAATCTGAT
14778305 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14778331 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14778357 C
1 C
14778358 CAAAATCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14779239 original size:26 final size:26
Alignment explanation
Indices: 14779202--14779254 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
14779192 TTGGTTTGAT
14779202 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14779228 CTTAGA-TCGGGAATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
14779254 C
1 C
14779255 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14781016 original size:26 final size:26
Alignment explanation
Indices: 14780980--14781036 Score: 96
Period size: 26 Copynumber: 2.2 Consensus size: 26
14780970 CTGGTCTAAT
*
14780980 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
*
14781006 CTTAAACTAGGAATGAACTCTGTATG
1 CTTAAACTAGGAATGAACTCCGTATG
14781032 CTTAA
1 CTTAA
14781037 GTTAACCCAC
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAAACTAGGAATGAACTCCGTATG
Found at i:14781763 original size:902 final size:902
Alignment explanation
Indices: 14775834--14786377 Score: 12672
Period size: 902 Copynumber: 11.8 Consensus size: 902
14775824 ACTCCGTATG
* **
14775834 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GTAGGC-GG-GG-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* * ** * *
14775892 GGGCACTACGTCGGCCTGAGAGACGGGATAAGCTAGCCGTGAATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * *
14775957 TAGGCACGTCTTCATATTTTTGCATGCCAATGCCATTTTTATCGATTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
14776022 CCCTTAAGCCTTCACATTAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
14776087 AACTTTTTACGGTTCGGGATTTTTTAAAAATTATTCGGAAGGCA-TTTTGGCCCCAAACATGGTA
261 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGG-AGTTTTGGCCCCAAACTTGGTA
* * * * *
14776151 GACGTGATCCTTGTATTTTTGGTGGCACGCATAAAAAAATTAAGCTAAAAACTCGAAGTGTAGAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
14776216 GATTTTGTGACCATTTGAAGAAAGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
14776281 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-GAGTTCTCGAGGTTTGATGAGTGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
14776345 CGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGA
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * * * * * * *
14776410 TCGTCGAAACCCCAATGTCATTGGTCAGGTTCTCTGGCGATGCTCCGATGATTGAGCCCC-AGCG
585 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-CG
* * * *
14776474 AAGAAAAATGCGGCACCAGCACATGCCCAAGCTCAGCATGTGCTACTGCAA-CC-C--TC--G--
649 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTC
* * *
14776531 -G----T---CT--G---G---TCC-AAT-CTTAGACTGGGAATGAACTTCGTATGCGTAAGTCA
714 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
14776578 ACCCACAAAATGAGCGTGCCGGCGCTCAGCCGGCCAGA-GGGCGAGGATGCGTAAGCCAGGGGTC
779 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG-GGATGCGCAAGCCAGGGATC
** * * * * *
14776642 ACCCGAGTCCCCCTCTACGTGCTG-TCGATCCTGCTGCTACAACCCTCAGTCCAGTCCAAT
843 GGCCGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCACAACCCTCAGTCCAGTCCGAT
* * * * *
14776702 CTTAGACTGGGAATGAACTACGTATGCCTAAGCCAACCGATGAAATGA----GCAGGC--G-GGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* * ** * * *
14776760 AGGCACTACGCCGGCTAGAGAGACGGGATATGCAAGTCATGGATTGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
14776825 TAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
** * *
14776890 CCCTTAAGCCTTCACAAGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
14776955 AACTTTTTACGGTTCGGGA-TTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACTTTGTAG
261 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
14777019 ACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATT-AGCTAAAAACTCGAAGTGTACGAG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
14777083 ATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
14777148 TGTAAAATCTCAAACGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
14777213 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACTCCCCCC-GCCCCCCCGAT
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * * * *
14777277 C-ACTGGAACCCTAATACCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCTCGACGA
586 CGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
** * ** * * * *
14777341 AGAAAAATGCCACAGCAGCACATGCTTGAGCCAAGCTTGTGCTGTCGCAACCCTC-AGTCCGGTC
650 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCTGGTC
* * *
14777405 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTTA
714 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
14777470 ACCCATGAAACGAGCGTGCGGGGGCTCAGCCGGCGAGAGGGGCGGGATGCGCAAGCTAGGGATCG
779 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCG
* * * * * *
14777535 GTCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCT-GCAGCAACCCTCCA-TCTAGTCTGAT
844 GCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCA-CAACCCT-CAGTCCAGTCCGAT
* * * *
14777594 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGGAACGA----GCAGAC--G-GGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* * * * *
14777652 AGGCACTACGCCGGCCAAAGACACGGGAAGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
14777717 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
14777782 CCCTTAAGCCTTCACCTGAAGTTTCATAGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
14777847 AATTTTTTGTGGTTCGGGAATTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAG
261 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
14777912 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAACTCGAAGTGTACAAG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
14777977 ATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTAGTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
14778042 TGTAAAACCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCAAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * *
14778107 AATATAAAGGCCATGTATCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGCCCCCCCGA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGA
* * * * *
14778172 TCGTCGGAACCTCAATGCC-TCCGGTCAGGTTCTCCTG-TGATGCTTCGACGATGGTGCCCTGAG
585 TCGTCGGAACCCCAATGCCGT-CGGTCAGGTTCTCC-GACGATGCTCCGACGATGGTGCCCCGAC
* * * * * **
14778235 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTACTGCAACCCTTGGT-TCAA
648 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCT-GG
* *
14778299 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCAAAAT
712 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
14778364 CAACCCACGAAACAAGCGTACGGGCGCTTAGCCGGCCAGAAGCGCGGGATGCACAAGCCGGGGAT
777 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGAT
** * * * * *
14778429 CGGTTGGGTCCCCCTCTACGTGCTG-TCGATCCTGCTACCATAAGCCTCAGTCCGGTCTGAT
842 CGGCCGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCACAACCCTCAGTCCAGTCCGAT
* *
14778490 CTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGC--G-GGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* * * * *
14778552 GAGCACTATGCCGGCCAGAGAGATGGGATGTGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
14778617 TAGGCACATCTTCATATGTCTGCATGCTAATGCCA-TTTTATTGGCTTGTAAATTCATACAATGG
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA-TGGCTTGTAAATTCATACAATGG
*
14778681 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** * * *
14778746 AAACCTTTTGCGGTTTTGAATTTTTTAAAATTTTTTCGGGAGGAGTTTTGGCCCCAAACTTAGTA
260 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
14778811 GACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
14778876 GATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
14778940 CTATAAAATCTCAAATGCTCGTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* ** * *
14779005 CAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTAG-CTCCCCGG
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * * * *
14779069 TGGCCGGAACCTCAGTGCC-TCCGGTCAGGTTCTCCGACGATGCTCAGGCGATGGTGCCCCGACG
585 TCGTCGGAACCCCAATGCCGT-CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
** * * * * * *
14779133 AAGAAAAATGCGGCACCAGCACATGCTTGAGCCCAGTATGTGCTGCCGTAACCTTCGGTTTGGTT
649 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTC
14779198 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TCGGGAATGAACTCCGTATGCCTAAGTC
714 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
14779262 AACCCATGGAACGAGCGTGCGGGCGGTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC
778 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATC
** * * * * *** * *
14779327 AACCGGATCCCCCTCAGCATGCTGCTGATCCAGCTACTGTAACCCTCGGTCCAGCCCGAT
843 GGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTCAGTCCAGTCCGAT
* *
14779387 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAGGAAATGAGCGGGCGGGCGGGCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG-
*
14779452 CGGGCA-TGACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGTG
65 CGGGCACT-ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* **
14779516 TTTAGGCACGTCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
129 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * *
14779581 GTCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTC
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * * *
14779646 AAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTAGCCCCAAACTTAGT
259 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
14779711 GGACATGATCCTTGTATTTTTTTTGGCTTGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACA
324 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
14779776 AGATTTTGTTACCATTTGAAAAAAGTGTCACCATTTCAGGCACTTTAATGGCTACTGGCAGAAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
14779841 CCTGTAAAATCTTAAATGCTCTTTAAGGGGTTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
** * *
14779906 CCAATATGGGGGCCAAGTACCAGCACCCACCGCACGTCATGTGCGCACACCCCCCCCGGCCCCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCC
** ** * * * *
14779971 CGATCACCGGAACCCCAATGCCACCAGTCAGGTTCTCCGACGATGCCCCAATGATGGTGCCCCGA
582 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * **
14780036 TGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCAACAACCCTCGA-----
647 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGG
14780096 TC----C----A----G--T---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGT
712 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
14780140 CAACCCAAGAAACGAGCGTGCGGGTAG-TCAGCCAGCTAGAGGGGCGAGATGCGCAAGCC-GAGG
777 CAACCCACGAAACGAGCGTGCGGG-CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAG-GG
* * * *** * *
14780203 ATCAGTCGGGTCCCCCTCTGCATGCTG-TCGATCCTGCTATTGCAACCCTCGGTCCAGTCTGAT
840 ATCGGCCGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCACAACCCTCAGTCCAGTCCGAT
* * * * *
14780266 CATAGATTGGGAATGAACTCCGTATGCCTAAGCCAATCGACGAAATGAGCGGGCGGGC---AGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* * * * * *
14780328 GGGCACTACGCTGGCCAGAGAGATGAGATGCGCAAGTCGTGGATCGATGGGGTGGTAGGTGTGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
14780393 TAGGCACATCTTCATATTTCTGCCTGCCATTGCCATTTTTATGGCTTTTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
14780458 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* ** * * *
14780523 AACCTTTTGCGGTTTTGAATTTTTTAAAATTTTTTCGGGAGGAGTTTTGGCCCCAAACTTAGTAG
261 AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
14780588 ACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
326 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
14780653 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACC
391 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
14780718 TGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
456 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * ** *
14780783 AATATAAGGGCCAAGTACCAGTACCCATCGCACATCATGTCCATACACCCCCCCGGCCCCCTCGA
521 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGA
* * *
14780848 TCGCCGGAACCCCAATGCCGTCGGTTAGGTTCTCCGACGATCCTCCGACGATGGTGCCCCGACGA
585 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * * * * *
14780913 AG-AAAGTGCGACACCAGGACATGCCCCAGCCCAGCATGCGCTACCGCAACCCTCGATCTGGTCT
650 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCT
* * * * * * *
14780977 AATCTTAGACTAGGAATGAACTCCGTATGCTTAAACTAGGAATGAACTCTGTATGCTTAAGTTAA
715 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
14781042 CCCACGAAACCAGCGTGCGGGCACTCAGCCAGCCAGAGGGGCGGGATGCACAAGCCAGCGATCGA
780 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGG
* * * * * * *
14781107 TCGGGTCCCCTTCTGTGTGGTGCTGATCCTGCTGCCACAACCTTCAGTCCAGTCTGAT
845 CCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTCAGTCCAGTCCGAT
* * *
14781165 GTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* * * * *
14781230 GGGCACTACGTCGGCCAGAGAGCCGGGATGCGCAAGCCGTGGATCGATAGGGTGCTAAGTGTGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
14781295 TAGGCACATCTTCATATTTCTGCATGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
14781360 CCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
**
14781425 AACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
261 AACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
14781490 GACGTGATCCATGTATTTTTGTTGGCATGCACAAACAAATTCTGCTAAAAACTCGAAGTGTGCAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
14781555 -ATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
14781619 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
14781684 CAACATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCCGGCCCCCCCG
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCG
* *
14781749 ATCGTCGAAACCCCAATGCCGTCGGTCAGG---T-------T-CTCCGACGATGGTGCCCCGATG
584 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* *
14781803 AAG-AAAATACGGCACCAGCACATGCCCGAG-CCATGCATGTGCTGCCCCAA--C-C---C---T
649 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA-GCATGTGCTGCCGCAACCCTCGATCTGGT
14781857 C-GA---T---CT--G-AT---CT--G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
713 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
** * * ** * *
14781905 AACAGACGAAAAGAGCGTGCGGGCGTTCAGTTGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATC
778 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATC
* * * ** ** ***
14781970 GGCCGGGTCCCCCTCAGCGTGCTGCCGATCCTGCTGCCGTAACCCTTGGTTTGGTCCGAT
843 GGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTCAGTCCAGTCCGAT
* * * *
14782030 CTTAGATTGGGAATGAATTCCGTATGCCTAAGCCAACCAACGAAAGGAGCGGGCGGGCGGGCTGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GG
* * * *
14782095 CGGGCACTACGCCAGCCAGAGAGGCGTGATGCGCAAGCCGTGGATCGATAGGGTCGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* ** *
14782160 TTAGGCACATCTTCATATTTCTACATGCCAATAACATTTTTATGGCTTGTAAATTTATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
14782225 TCCCTTAAGCCTCCACGTGATGTTTCATGGCAAGACGACTCGTTTTATATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * **
14782290 AAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCTGAACTTGGTA
260 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
14782355 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTAAGCTAAAAAGTCAAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
14782420 GATTTTGTGACCATTTGAATAAAA-TGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAA
390 GATTTTGTGACCATTTGAA-AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
14782484 CCTGTAAACTCTCAAATGCTCTTTAAAGGGGAGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * *
14782549 CCAATATAAGGGCCAAGTACCAGTACCTATCACACATCATGTGCGTACACCCCCCGGCCCCCTCG
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * *
14782614 ATCGTCGGAACCCCAATGACGTCGGTACCCCAATGCATCCAGTCAGATTCTCCGGCAATGCTCCG
584 ATCGTCGGAACCCCAATG-C--C-GT----C---G------GTCAGGTTCTCCGACGATGCTCCG
* * * * * * *** * *
14782679 AGGATGGTGCCTCGGCAAAGAAAAATGTGCCACCAGCACATGTTTGAGCCTAGCATGTGCTGTCG
632 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * *
14782744 CAACCCTC-AGTCCGGTCCGATCTTAGATTGGGAATGAACTCCCTATGCTTAGACTGGGAATGAA
697 CAACCCTCGA-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
** * * *
14782808 CTAAGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGTGGGA
761 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
* ** ** ** * * **
14782873 TGCGCAAGCCGGGGATCGGCCGGGTCCCTTTCTATGTGCTGCCAATACTGCTACCATAACCCTTG
826 TGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTCA
*
14782938 GTCCGGTCCGAT
891 GTCCAGTCCGAT
* * *
14782950 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAACGGGTGGGCAGGGGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GGGCGG
* * *
14783015 CAGGCACTACGCCGGCCAAAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
14783080 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
14783145 TCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGACTACTCGTTTTCTA-TTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
14783209 AAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTA
260 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
14783274 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGTATGCAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
14783339 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
14783404 CTGTAAAATCTCAAATGCTTTTTAAGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
14783469 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGCGTACACCCCCCCGCCCCCCCGA
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
*
14783534 TCGTCAGAACCCCAATGCCGTCGGTACCCCAATGCATCCGATCAGGTTCTCCGACGA-GCCTCCG
585 TCGTCGGAACCCCAATG-C--C-GT----C---G-----G-TCAGGTTCTCCGACGATG-CTCCG
** ** * * *
14783598 ATAATGGTGCCCCGGTGAAGACAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTGCAGCCG
632 ACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * * ** * * *
14783663 TAACCCTTGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATAAAC
697 CAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
14783728 TCCATATGCCTAAGTCAACCCACGAAACAAGCGTGC-GGCTGCTCAACCGGCCAGAGGGGCAGGA
762 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCAGCCGGCCAGAGGGGCGGGA
* * * ** * * *
14783792 TACACAAGCC-GAGGATCGGTCGGGTCCCCCTCTATGTGCTG-TCGATCTTACTGCCACAACCCT
826 TGCGCAAGCCAG-GGATCGGCCGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCACAACCCT
*
14783855 C-GATCCGGTCCGAT
889 CAG-TCCAGTCCGAT
* * *
14783869 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACAAGCGGGCGGGC--G-AGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
* * *
14783931 GGGCACTACGCCGGCCAGAGAGATGGGATGCGCAAGCCGTAGATCGATAGGGTGATAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
14783996 TAGGCACATCTTCATATTTTTTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
** * * *
14784061 TCCCTTAAGCCTTCACAAGAAGTTTCATGGAAAGATGACTCGTTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * ** * * * *
14784126 AAACTTTGTACGGTTCGATATTTTTTAAAATTTTTTCGGAGGGGGTTTTGGCCCCTAACTTAGTA
260 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
** * * *
14784191 GAAATGATCCTTGTATTTTTGTTGGGATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
14784256 GATTTTGTGACCATTTGTAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
14784321 CTGTAAAATCTCAAATGCTGTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
14784386 CAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTGACCCCCCCCG
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCCG
* * ** * *
14784451 ATCGTCGGAACCCTAATGCCGCCGGTCAGGTTC-CTCGGTGATGCTCCGGCGATGGTGCCCCGGC
584 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC-CGACGATGCTCCGACGATGGTGCCCCGAC
* * * * * *
14784515 GAAGAAAAATACGGCACCAGCACATGCCCAAGCCTAGCATGTGCTGCCACAACCCTTGGT-TCGG
648 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCT-GG
* * *
14784579 TCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACCGGGAATGAACTTCGTATGCCTAAGT
712 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * * *
14784644 CAACCCATGAAAATGAGCTTGCGGGCACTCAACCTGCCAGAGGGGCGGGTTGCGCAAGTCGCA--
777 CAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAG-C-CAGG
* * * ** * *
14784707 TATCGGCCAGGTCCCCTTCTGCGTGCTG-TCGATCCTGCTACCGTAACCCTC-GATTCAATCCGA
839 GATCGGCCGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACCACAACCCTCAG-TCCAGTCCGA
14784770 T
902 T
* * *
14784771 CTTAAACTAGGAATGAACTCCGTATGCCTAA-CCAACCGATGAAACGAGCGGGTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGGCGGG
* * * *
14784835 CGAGCGGGCGGTCACTACGTCGGCCAAAGAGACGGGATGCACAAGTCGTGGATCGATAGGGTGGT
62 CG-GC--G-GG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
14784900 CGGTGGGTTTAGGCACATCTTCATATTTGC-GCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
122 AGGTGGGTTTAGGCACATCTTCATATTT-CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
*
14784964 AT----TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA
186 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
14785025 CGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAAGTTTTTCGGAAGGAGTTTTGGCCCTA
251 CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * *
14785090 AACTTGGTAGATGTGATACTCGTATTTTTGTTGGCATGCACAAAAAAAATTCAGCTAAAAACTCG
316 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCG
**
14785155 AACAGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
380 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
14785220 GGCAGCAAACCTGTACAATGTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCGAGGTTTGATCAGG
445 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
14785285 GATTAAGAGGGGCCCAATTATAAGGGCCAAGTA-CAGCACCCATCGGCACAT-ATTGTTGCGCAC
510 GA-T-AG-GGGG-CCAA-TATAAGGGCCAAGTACCAGCACCCATC-GCACATCA-TG-TGCGCAC
*** * * ** * * * * *
14785348 A---TATGTG------C-ATTGCCACAACCCCAATGCCGCCAGACAGGTTCTCTGACGATGCTCT
567 ACCCCCCG-GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
* ** * * * *
14785403 GGCGATGGTGCCTTGACGAAGAAAAATACGACACCAACACATGCCCGAGCCCAGCATGTGCTACC
631 GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * *
14785468 GCAACCCTTCAGGTCTGATCTGATTTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATG
696 GCAACCC-TC-GATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
* * * * * * ** *
14785533 AACTCTGTATGCCTAAGTTAACCCACAAAAGGAGCGTCCGGGTGCTCAGGAGGCCAGAGGGGCGA
759 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * * * *
14785598 GATGAGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCATGCTGCTAATCTTGTTACCGCAACCCT
824 GATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCT
* ** **
14785663 CAATCTGGTATGAT
889 CAGTCCAGTCCGAT
* * *
14785677 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCAGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC-GG
* *
14785742 CGAGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
14785807 TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAGACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * * *
14785872 TCCTTTCAGCCTTCACGTGAAGTTTCATGGTAGGATGACTCGTTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * ** * *
14785937 AAACTTTTTACAGTTCAAGATTTTTTTAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
260 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
14786002 GACGTGGTCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCATCTAAAAACTCGAAGTGTACAA
325 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
14786067 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAGTGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
14786132 CTGGAAAATCTCAAATGCTCTTTAA-AGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
14786196 TAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GACCCCCCGA
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * **
14786260 TCGCCGGAACCCTAATACCGTCGGTCAGG---T-------T-CTCCGACGATGGTGCCCCGGTGA
585 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * * *
14786314 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTTCTGCCACAACCCTCGGTCTGGTC
650 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTC
14786378 CAATCTTATG
Statistics
Matches: 8387, Mismatches: 1055, Indels: 446
0.85 0.11 0.05
Matches are distributed among these distances:
865 302 0.04
866 577 0.07
867 165 0.02
868 246 0.03
869 4 0.00
870 2 0.00
872 3 0.00
873 47 0.01
874 74 0.01
875 461 0.05
876 4 0.00
878 5 0.00
879 189 0.02
880 4 0.00
881 2 0.00
882 10 0.00
883 2 0.00
884 1 0.00
885 2 0.00
886 2 0.00
887 1 0.00
888 2 0.00
889 1 0.00
890 15 0.00
891 64 0.01
892 434 0.05
893 107 0.01
894 221 0.03
895 20 0.00
896 335 0.04
897 341 0.04
898 15 0.00
899 446 0.05
900 323 0.04
901 499 0.06
902 801 0.10
903 277 0.03
904 11 0.00
905 212 0.03
906 114 0.01
907 88 0.01
908 145 0.02
909 145 0.02
910 3 0.00
911 3 0.00
912 47 0.01
913 88 0.01
914 23 0.00
915 86 0.01
916 94 0.01
917 302 0.04
918 36 0.00
919 630 0.08
920 353 0.04
921 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (902 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCTG
ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGGC
CGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTACCACAACCCTCAGTCCAGTCCGAT
Found at i:14782636 original size:17 final size:17
Alignment explanation
Indices: 14782616--14782648 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
14782606 CCCCCTCGAT
14782616 CGTCGGAACCCCAATGA
1 CGTCGGAACCCCAATGA
*
14782633 CGTCGGTACCCCAATG
1 CGTCGGAACCCCAATG
14782649 CATCCAGTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.15
Consensus pattern (17 bp):
CGTCGGAACCCCAATGA
Found at i:14782816 original size:26 final size:26
Alignment explanation
Indices: 14782765--14782817 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14782755 CCGGTCCGAT
* **
14782765 CTTAGATTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTAACTATG
*
14782791 CTTAGACTGGGAATGAACTAAGTATG
1 CTTAGACTGGGAATGAACTAACTATG
14782817 C
1 C
14782818 CTAAGTTAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTAACTATG
Found at i:14783555 original size:17 final size:17
Alignment explanation
Indices: 14783535--14783568 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
14783525 CCCCCCCGAT
14783535 CGTCAGAACCCCAATGC
1 CGTCAGAACCCCAATGC
* *
14783552 CGTCGGTACCCCAATGC
1 CGTCAGAACCCCAATGC
14783569 ATCCGATCAG
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.24, C:0.41, G:0.21, T:0.15
Consensus pattern (17 bp):
CGTCAGAACCCCAATGC
Found at i:14783650 original size:919 final size:917
Alignment explanation
Indices: 14781871--14786284 Score: 5493
Period size: 919 Copynumber: 4.8 Consensus size: 917
14781861 CTGATCTGAT
* ** * * *
14781871 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACAGACGAAAAGAGCGTGCGGGCGTTCAGT
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
14781936 TGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGGCCGGGTCCCCCTC-AGCGTGCTGCCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTA-CGTGCTGCCGAT-
* * * ** * *
14782000 CTGCTGCCGTAACCCTTGGTTTGGTCCGATCTTAGATTGGGAATGAATTCCGTATGCCTAAGCCA
129 CTGCTACCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
14782065 ACCAACGAAAGGAGCGGGCGGGCGGGCTGGCGGGCACTACGCCAGCCAGAGAGGCGTGATGCGCA
194 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * **
14782130 AGCCGTGGATCGATAGGGTCGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATAAC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* * *
14782195 ATTTTTATGGCTTGTAAATTTATACAATGGTCCCTTAAGCCTCCACGTGATGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * *
14782260 CGACTCGTTTTATATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTT
389 CTACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
** *
14782325 TCGGAAGGAGTTTTGGCCCTGAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAA
454 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * * *
14782390 AACATTAAGCTAAAAAGTCAAAGTGTACAAGATTTTGTGACCATTTGAATAAAA-TGTCCCCATT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATT
* * *
14782454 TCAGACACTTTAATGGCTATTGGCAGCAAACCTGTAAACTCTCAAATGCTCTTTAAAGGGG-AGT
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTTGT
* * * *
14782518 GAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCTATCACA
647 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* *
14782583 CATCATGTGCGTACACCCCCCGGCCCCCTCGATCGTCGGAACCCCAATGACGTCGGTACCCCAAT
712 CATCATGTGCGTACACCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTACCCCAAT
* * * * * * ** *
14782648 GCATCCAGTCAGATTCTCCGGCAATGCTCCGAGGATGGTGCCTCGGCAAAGAAAAATGTGCCACC
776 GCATCCA-TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACC
*** * *
14782713 AGCACATGTTTGAGCCTAGCATGTGCTGTCGCAACCCTCAGTCCGGTCCGATCTTAGATTGGGAA
840 AGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAA
*
14782778 TGAACTCCCTATG
905 TGAACTCCGTATG
* * *
14782791 CTTAGACTGGGAATGAACTAAGTATGCCTAAGTTAACCCACGAAACGAGCGTACGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * *
14782856 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCTTTCTATGTGCTGCCAATAC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGAT-C
* * *
14782921 TGCTACCATAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTACCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14782986 CCGACGAAACGAACGGGTGGGCAGGG-GGGCAGGCACTACGCCGGCCAAAGACACGGGATGCGCA
195 CCGACGAAACGAGCGGGCGGGC-GGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
14783050 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
*
14783115 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
**
14783180 CTACTCGTTTTCTA-TTTTCATGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTT
389 CTACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* *
14783244 TTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
454 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14783309 AAAATTCAGCTAAAAACCCGAAGTATGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
519 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14783374 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGTTGTGA
584 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGA
14783439 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
649 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
14783504 TCATGAGCGTACACCCCCCCGCCCCCCCGATCGTCAGAACCCCAATGCCGTCGGTACCCCAATGC
714 TCATGTGCGTACA-CCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTACCCCAATGC
** * * *
14783569 ATCCGATCAGGTTCTCCGACGA-GCCTCCGATAATGGTGCCCCGGTGAAGACAAATGCGGCACCA
778 ATCC-ATCAGGTTCTCCGACGATG-CTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCA
* * ** *
14783633 GCACATGCCCGAGCCTAGCATGTGCAGCCGTAACCCTTGGTCCAGTCCGATCTTAGACTGGGAAT
841 GCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAAT
14783698 GAACTCCGTATG
906 GAACTCCGTATG
* * *
14783710 CTTAGACTAGGAATAAACTCCA-TATGCCTAAGTCAACCCACGAAACAAGCGTGC-GGCTGCTCA
1 CTTAGACTGGGAATGAACT-CAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC-GCTCA
* * * * * * * *
14783773 ACCGGCCAGAGGGGCAGGATACACAAGCCGAGGATCGGTCGGGTCCCCCTCTATGTGCTGTCGAT
64 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGAT
* * **
14783838 CTTACTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
129 C-TGCTACCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
14783903 AACCGACAAAACAAGCGGGCGGGCGAGC--G--GGCACTACGCCGGCCAGAGAGATGGGATGCGC
193 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
14783964 AAGCCGTAGATCGATAGGGTGATAGGTGGGTTTAGGCACATCTTCATATTTTTTACGTGCCAATG
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA-TTTCTACGTGCCAATG
** *
14784029 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACAAGAAGTTTCATGGAAA
322 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* **
14784094 GA-TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTGTACGGTTCGATATTTTTTAAAATT
387 GACT-ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * * ** *
14784158 TTTTCGGAGGGGGTTTTGGCCCCTAACTTAGTAGAAATGATCCTTGTATTTTTGTTGGGATGCAC
451 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * *
14784223 AAAAACATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGTAAAAAGTGTCCCCA
516 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
14784288 TTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTGTTTAA-GGGTGT
581 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGT-T
*
14784352 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCG
645 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * * *
14784417 CACATCATGTGCGCACACCCCCTGACCCCCCCCGATCGTCGGAACCCTAATGCCGCCGGT----C
710 CACATCATGTGCGTACACCCCCCG--CCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTACCCC
** *
14784478 -A-GGTTCC-TC-GG---T-----GATGCTCCGGCGATGGTGCCCCGGCGAAGAAAAATACGGCA
773 AATGCATCCATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCA
* * ** * * *
14784531 CCAGCACATGCCCAAGCCTAGCATGTGCTGCCACAACCCTTGGTTCGGTCTGATCTTAGATTGGG
838 CCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGG
14784596 AATGAACTCCGTATG
903 AATGAACTCCGTATG
* * * * *
14784611 CTTAGACCGGGAATGAACTTC-GTATGCCTAAGTCAACCCATGAAAATGAGCTTGCGGGCACTCA
1 CTTAGACTGGGAATGAAC-TCAGTATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCA
* * * * *** * * * *
14784675 ACCTGCCAGAGGGGCGGGTTGCGCAAGTCGCATATCGGCCAGGTCCCCTTCTGCGTGCTGTCGAT
64 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGAT
* ** * *
14784740 CCTGCTACCGTAACCCTCGATTCAATCCGATCTTAAACTAGGAATGAACTCCGTATGCCTAA-CC
129 -CTGCTACCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
14784804 AACCGATGAAACGAGCGGGTGGGCGGGCGGGCGAGCGGGCGGTCACTACGTCGGCCAAAGAGACG
193 AACCGACGAAACGAGCGGGCGGGCGGGCGGGC-A------GG-CACTACGCCGGCCAGAGAGACG
* * * *
14784869 GGATGCACAAGTCGTGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTGC-GCG
250 GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT-CTACG
14784933 TGCCAATGCCATTTTTATGGCTTGTAAATTCAT----TGGTCCCTTAAGCCTTCACGTGAAGTTT
314 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * *
14784994 CATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTT
379 CATGGCAAGACTACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
* * * * *
14785059 TAAAAGTTTTTCGGAAGGAGTTTTGGCCCTAAACTTGGTAGATGTGATACTCGTATTTTTGTTGG
444 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
**
14785124 CATGCACAAAAAAAATTCAGCTAAAAACTCGAACAGTACAAGATTTTGTGACCATTTGAAAAAAG
509 CATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* *
14785189 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTACAATGTCAAATGCTCTTTA
573 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
14785254 AGGGGCTGTGAGTTCTCGAGGTTTGATCAGGGATTAAGAGGGGCCCAATTATAAGGGCCAAGTA-
638 AGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGA-T-AG-GGGG-CCAA-TATAAGGGCCAAGTAC
* * * ** *
14785318 CAGCACCCATCGGCACAT-AT-T--GT--------TG-CGCACATAT-GT--G-----CATTGCC
698 CAGCACCCATC-GCACATCATGTGCGTACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCC
* * ** * * * * ** *
14785362 -AC--AACCCCAATGCCGCCAGACAGGTTCTCTGACGATGCTCTGGCGATGGTGCCTTGACGAAG
762 GTCGGTACCCCAATGCATCCA-TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAG
* * * * * * *
14785424 AAAAATACGACACCAACACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTTCAGGTCTGATCT
826 AAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCC-TCA-GTCCGGTCC
* *
14785489 GATTTTAGACTGGGAATGAACTCTGTATG
889 GATCTTAGACTGGGAATGAACTCCGTATG
* * * * * * * *
14785518 CTTAGACTAGGAATGAACTCTGTATGCCTAAGTTAACCCACAAAAGGAGCGTCCGGGTGCTCAGG
1 CTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * **
14785583 AGGCCAGAGGGGCGAGATGAGCAAGCCGGGGATCGACCAGGTCCCCCTCTGCATGCTGCTAATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATC-
* * * * **
14785648 TGTTACCGCAACCCTCAATCTGGTATGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
130 TGCTACCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14785713 CCGACGAAATGAGCGGGCAGACGGGCGGGC-GAGCACTACGCCGGCCAGAGAGACGAGATGCGCA
195 CCGACGAAACGAGCGGGCGGGCGGGCGGGCAG-GCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
14785777 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* * * * *
14785842 ATTTTTATGGCTTGTAAATTCAGACAATGGTCCTTTCAGCCTTCACGTGAAGTTTCATGGTAGGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
14785907 -TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCAAGATTTTTTTAAATTTT
389 CT-ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
* * *
14785971 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGGTCCTTGTATTTTTTTTGGCATGCACAA
453 TTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
14786036 AAAAATTCATCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
518 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * * *
14786101 TTAGACACTTTAGTGGCTACTGGCAGCAAACCTGGAAAATCTCAAATGCTCTTTAA-AGGTTGTG
583 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTG
*
14786165 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCAC
648 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
14786230 ATCATGTGCGCACACCCCCCGACCCCCCGATCGCCGGAACCCTAATACCGTCGGT
713 ATCATGTGCGTACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGT
14786285 CAGGTTCTCC
Statistics
Matches: 3014, Mismatches: 381, Indels: 198
0.84 0.11 0.06
Matches are distributed among these distances:
890 1 0.00
891 5 0.00
892 1 0.00
893 1 0.00
894 3 0.00
896 23 0.01
897 18 0.01
898 8 0.00
899 116 0.04
900 4 0.00
901 193 0.06
902 234 0.08
903 149 0.05
905 71 0.02
906 117 0.04
907 95 0.03
908 144 0.05
909 147 0.05
910 8 0.00
911 2 0.00
912 50 0.02
913 88 0.03
914 21 0.01
915 76 0.03
916 101 0.03
917 298 0.10
918 49 0.02
919 626 0.21
920 361 0.12
921 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (917 bp):
CTTAGACTGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCT
GCTACCGTAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACT
ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC
GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGT
TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
ATGTGCGTACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTACCCCAATGCATC
CATCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACGGCACCAGCACA
TGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACT
CCGTATG
Found at i:14783713 original size:26 final size:26
Alignment explanation
Indices: 14783684--14783736 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14783674 CCAGTCCGAT
* * *
14783684 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCATATG
14783710 CTTAGACTAGGAATAAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
14783736 C
1 C
14783737 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:14785522 original size:26 final size:26
Alignment explanation
Indices: 14785493--14785544 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14785483 TGATCTGATT
*
14785493 TTAGACTGGGAATGAACTCTGTATGC
1 TTAGACTAGGAATGAACTCTGTATGC
14785519 TTAGACTAGGAATGAACTCTGTATGC
1 TTAGACTAGGAATGAACTCTGTATGC
14785545 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.15, G:0.25, T:0.31
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCTGTATGC
Found at i:14787195 original size:26 final size:26
Alignment explanation
Indices: 14787159--14787212 Score: 90
Period size: 26 Copynumber: 2.1 Consensus size: 26
14787149 GATCTGATCC
*
14787159 TAGACTGGGAATGAACTCAGTATGCT
1 TAGACTAGGAATGAACTCAGTATGCT
*
14787185 TAGACTAGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCAGTATGCT
14787211 TA
1 TA
14787213 AGTCAACCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCAGTATGCT
Found at i:14788045 original size:26 final size:26
Alignment explanation
Indices: 14788016--14788068 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14788006 TAGGTCTGAT
*
14788016 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTATGTATG
14788042 CTTAGACTGGGAATGAACTATGTATG
1 CTTAGACTGGGAATGAACTATGTATG
14788068 C
1 C
14788069 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTATGTATG
Found at i:14788947 original size:26 final size:26
Alignment explanation
Indices: 14788918--14788970 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14788908 CCGATCTGAT
14788918 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14788944 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14788970 C
1 C
14788971 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14789842 original size:26 final size:26
Alignment explanation
Indices: 14789813--14789865 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14789803 TCGGTCTGAT
* * *
14789813 CTTAGACTAGGAATCAACTTCGTATG
1 CTTAGACCAGGAATAAACTCCGTATG
*
14789839 CTTAGACCGGGAATAAACTCCGTATG
1 CTTAGACCAGGAATAAACTCCGTATG
14789865 C
1 C
14789866 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACCAGGAATAAACTCCGTATG
Found at i:14790694 original size:890 final size:888
Alignment explanation
Indices: 14786772--14801787 Score: 8549
Period size: 902 Copynumber: 16.7 Consensus size: 888
14786762 TTTTCACGAC
* * * *
14786772 CCTTGTATTTTTGTTGGCATGCCCAAAAAAATTAAGCTAAAAACTCGAATTCTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * * *
14786837 GACCATTTGAAAAAAGTGTCCCAATTTTAGACACATTAATGGCTACTGCCAGCAAATCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
14786902 TCTCAAATGCTCTTTAAGGAGGCGTGAGTTCTCAAGGCTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * *
14786967 GGGCCAAGTACCAGCACCCATCGTACAT-ATGTACGCACACCCCCCCGGCCACCCCGATCGTCGG
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGA
* * * * *
14787031 AACCCCAATGCCGTCGGTTAGATTCTCCGACGATGCTCCGGTGATGGTACCTCGACGAAGAAAAA
259 AACCCCAATGCCGT-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * * * * ** * * * *
14787096 TGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCCGCCACAATGC-TCGCTCTGATCTGATCCT
323 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTC-GGTCTGATCTT
* * *
14787160 AGACTGGGAATGAAC-TCAGTATGCTTAGACTAGGAATGAACTCCGTATGCTTAAGTCAACCCAT
387 AGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
14787224 GGAACGA--------G---TC--CGGCCAGAGAGGTGGGATGTGCAAGCCGGGGATCAGTCGGGT
451 GAAACGAGCGTGCGGGCACTCAGCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGT
* * * * *
14787276 CCCCCTATGCGTGCTG-TCGATCCTACTGCTGCAACCCTCGGTCTAGTCCGATCTTAGACTGGGA
515 CCCCCTCTGCGTGCTGCT-GATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGA
* * * ** * * *
14787340 ATGGACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGTCGGCCAAA
579 ATGAACTCCGTATGCCTAAGCCAACCGACAAAAC-AGCGAACGAGCGGGCACTACGCCGG-CAGA
* * * *
14787405 GAGACGGGATGCGCAAGTCATGGATCAATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTT
642 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
14787470 GC-GCATGCCAATGCCATTTTTATGGCTTGTAAA-T--T-C-A--------T-A-----CA--TG
707 -CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* **
14787513 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTTAAG
771 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAG
* * * *
14787578 AGTTTTTAAAAGTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGAT
836 ATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCAAAACTTAGTAGACGTGAT
*
14787632 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGAGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
14787697 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTACAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
14787762 TGTCAAATGCTCTTTAAGGGGCTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * *
14787827 GGGCCAAGTATCAGCACCCATCGCACATCATGTGTGCACACCCCCC-GACCCCCCGATGGTC-AG
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGA-
** *
14787890 AACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCAGGCGATGGTGCCCCGACGAAGAAAAA
259 AACCCCAATGCCG-TGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * *
14787955 TACAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA-CCTTCGGTTAGGTCTGATCTT
323 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTT-GGTTCGGTCTGATCTT
**
14788019 AGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGAATGAACTATGTATGCCTAAGTCAACCCAC
387 AGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * * *
14788083 GAAACGAGCGTGCGGGCACTCAACAGGCTAGTGGGGCAGGAAGTGCAAGCCGAGGATCGGTCAGG
451 GAAACGAGCGTGCGGGCACTCAGC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGG
* * * ** * * *
14788148 TTCCCCTCTGCGTGCTACTGATCCTGCTATTGCAACCCTC-AGTCTGGTCCAATCTTAGACTAGC
514 TCCCCCTCTGCGTGCTGCTGATCCTGCTACTGCAACCCTCGA-TCCAGTCCGATCTTAGACTGGG
* * *
14788212 AATGAACTCCGTATGCCTAAGCCAACTGACAAAACGAGTGGAGGGGCAGACGAGCGGGAACTACG
578 AATGAACTCCGTATGCCTAAGCCAACCGACAAAAC------A-GCG-A-ACGAGCGGGCACTACG
* * * **
14788277 CCAGCCAGAGAGATGGGATGCGCAAGCTGTGGATCGATAATGTGGTAGGTGGGTTTAGGCACATC
634 CC-GGCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
*
14788342 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCC
698 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
*
14788407 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTATGATTTTTGAAACTTTTTAC
763 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* * * * *
14788472 GATTCGAGATTTTTTAAAATTTTTTTGAAGGAGTTTTGGCCAAAAACTTGGTAGACGGGAT
828 GGTTCGAGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCAAAACTTAGTAGACGTGAT
* *
14788533 CCTTGTGTTTTTGTTGGCATGCACAAGAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
14788598 GACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAAT-GCTACTGGCAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
14788662 TCTCAAATGCTCTTTAAGGGGTGGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAGGGGT-GTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
14788727 GGGCCAAGTACCAGCACCCATCGCACAACATGTGCGCACAACCCCTCTGGCCCCCCCGATCGCC-
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCC-CCGGCCCCCCCGATCGCCG
*** *
14788791 ACAACATTAATGCCGTCGGTCAGGTTCTCCGA-GAGGCTCCGGCGATGGTGCCCCGACGAAGAAA
258 A-AACCCCAATGCCGT-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * ** * * ** * *
14788855 AATGCAGCACCAGCACAAGGTCGAGCCCAGTATGTGCTATCGCAACCCTCAGTCCGATCTGATCT
321 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTCGGTCTGATCT
*
14788920 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
386 TAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* **
14788985 GAAACGAGCGTGTGGGCACTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAACTGGG
451 GAAACGAGCGTGCGGGCACTCAGC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGG
* * * ** *** * * *
14789050 TCCCCCTCTACGTGCTGCCGATCCTACCGCCATAACCCTCAATCCGGTCTGATCTTAGACTGGGA
514 TCCCCCTCTGCGTGCTGCTGATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGA
** * * **
14789115 ATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGACGGGCGGGCACTACATCGGCTAGA
579 ATGAACTCCGTATGCCTAAGCCAACCGACAAAAC-AGCGAACGAGCGGGCACTACGCCGGC-AGA
* *
14789180 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTATATCTTCATATTT
642 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
*
14789245 -TCGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCATGTG
707 CT-GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* ** *
14789309 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACCTTTTACGGTTCCG-
771 AAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTT-CGA
* *
14789373 GATTTTTTAAAATTTTTTCGGGAA-GATTTTTGGCCCAAAACTTAGTGGACGTGAT
835 GATTTTTTAAAATTTTTT--GGAAGGAGTTTTGGCCCAAAACTTAGTAGACGTGAT
* * *
14789428 CCTTGTATTTTTGTTGGCATGCACAAAAAATTTGAGCAAAAAACTCGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
14789493 GACCATTTGAAAAAAGTGTCCCTATTTTAGACACTTTAATGGCTAGTGGCAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * * * *
14789558 TCTCAAATGCTCTTTATGGGGGTGTGAGTTCTCGAGGTTAGATGAGGGATAGGGGACCAGTATAA
131 TCTCAAATGCTCTTTA-AGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
14789623 GGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCCGATGGCCGGA
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAA
* * * *
14789688 ACGCCAATGTCGTTGGTCAGGTTCTCCGATGATGCTCAGGCGATGGTGCCCCGACGAAGAAAAAT
260 ACCCCAATGCCG-TGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * * *
14789753 GTGGCACAAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCTTTGGTTCGGTCTGATCTTAG
324 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTCGGTCTGATCTTAG
* * * *
14789818 ACTAGGAATCAACTTCGTATGCTTAGACCGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAA
389 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* ** * * *
14789883 ACGAACGTGCGGGCGGTCAGTCGGCCAAAGGGGCGGGATGCGCAAGCCGTGGATCGGTCGGATCC
454 ACGAGCGTGCGGGCACTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCC
** * * * * *
14789948 CCCTCAACGTGCTGCTGATCCTGCTACTGTAACCGTTGATCCAGCCCGATCTTAAACTGGGAATG
517 CCCTCTGCGTGCTGCTGATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATG
* *
14790013 AACTCCATATGCCTAAGCCAACCGAC-AAA-A-TGAACGAGCGGGCACTACGCCGGC-GAGAGAC
582 AACTCCGTATGCCTAAGCCAACCGACAAAACAGCGAACGAGCGGGCACTACGCCGGCAGAGAGAC
* * *
14790074 GAGATGCCCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACA
647 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCA
*
14790139 TGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTT
712 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * *
14790204 CATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTTGCGGTTCGGGATTTT
777 CATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC-TTTTTACGGTTCGAGATTTT
* * * *
14790269 TGAAAATTTTTTCGGAAGGAGTTTTGACCCCAAACTTATTAGACGTGAT
841 TTAAAATTTTTT-GGAAGGAGTTTTGGCCCAAAACTTAGTAGACGTGAT
* *
14790318 CCTAGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
** * * *
14790383 GATAATTTAAAAAAAAGCGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAT
66 GACCATTT-GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * * *
14790448 ATCTTAAATGCACTTTAAGCGCGTGTGAGTTCTCAAGGTTGGATGAGGGATAGGGGGCCAATATA
130 ATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
14790513 AGGGCCAAGAACTAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGA
194 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGA
* * * *
14790578 AACCCCAATGCCGCTGGTTAGGTTCT-CGGCGATGCTCCGACGATGGTGCCCC-ATGGAAGAAAA
259 AACCCCAATGCCG-TGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAA
* *
14790641 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTTGCAACCCTTGGTTCGGTTTGATCTT
322 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTCGGTCTGATCTT
* * *
14790706 AGACTAGGAATGAACTCCGTATGCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACG
387 AGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * * *
14790771 AAACGAGTGTGCAGGCGCTCAGTCGGCCAGACGGGCAGGATGCGTAAGCCGGGCATCATCCGGGT
452 AAACGAGCGTGCGGGCACTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGT-CGGGT
* * ** * ** * * *
14790836 CCCCCTCTGTGTGCTGCTGATCCTGCTGCCACAACCCTTGATCTGGTCCAATCATAGATTGGGAA
515 CCCCCTCTGCGTGCTGCTGATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAA
* ** ** *
14790901 TGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAATAAGCGT
580 TGAACTCCGTATGCCTA-A----G--CCAAC-C-G-A---C-AA---AA--CA-G--CGAA-CGA
* * * * * * * ** * * **
14790966 GCGGGCGCTCCGCTGGCCAAAGGGGCAGGATGCGCAAGTTGGGGATCGGTCA-GGTCCCCCTCTA
622 GCGGGCACTACGCCGG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGAT-AGGGT-----GGTA
* * * * ** * *
14791030 TGTGCGGTCGATCCTACTGTTGCAACCTCGGTC-TGGTCTGATCTTAG-ACTGGGAATG-AACTC
680 GGTG-GGT---T--TA--G--GC-ACATC-TTCAT-AT-T--TC-T-GCA-TGCCAATGCCA-TT
** * * ** ** ** **** * * * * *
14791092 CGTATGCCTAGGCCAA--C-TGACGAAACGAGCGGGCAGGCTGGCA-G-GCA-TTACGTCGGCCA
725 TTTATGGCT-TGTAAATTCAT-AC-AATGGTCCCTTAAGCCT-TCACGTGAAGTTTCAT-GG-CA
* *** * *** *** * * ** * *
14791151 GAGA-GACGGGATACGTAAGCCATGGATCGAT-AGGGTGGTAGGTGGGTTTA-GG--C-ACA---
784 -AGACGAC----T-CATTTTCTATTTTTC-ATGATTTTTGAAACT--TTTTACGGTTCGAGATTT
* * * ** * *** * *
14791207 TCTACATATTTCTTCATGCCAATTCCATTTTTATGGCTTGTAAA-TTCA-TACA-GTGGT
840 TTTA-AAATTT-TT--TG-GAA--GGA-GTTT-TGGC-CCAAAACTT-AGTAGACGTGAT
* ** *** * * **** * * ***** * * * *
14791264 CCCTT-AAGCTTTCACGTGAAGTTTCATGGCAAGA-TGA-CTCTTTTTCTC---TTTTTCACGAT
1 -CCTTGTATTTTTGTTG-GCA--TGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAAGAT
* ** *** *** * * ** * *
14791323 TTT-TGAAACCTTTTG----CGGT-TCGAGATTTTTTAAAATTTTTTGGAAATAGTTTTGGCCA-
61 TTTGTG--ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG--CTA---CTGG-CAG
* * **** * * * *** *
14791381 CAAACCTGGT-AGA-CGT--GATGCT-TGTGTTTTTGTTG-GCA-TGCACAAAAAAATTCA-GCT
118 CAAACCT-GTAAAATC-TCAAATGCTCT-T-TAAGGGGTGTG-AGTTCTC--AAGGTTTGATG--
*** * * ** * ** * * * ** ** **
14791438 AAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCGCCATTTCAG-ACATTTT
174 AGGGA--T-AGGGGGCCAATA-TAAG-GGCCA--AG-TACCAG-CAC-CCA--TC-GCACATCAT
*** *** ** * * * **
14791502 GATG-GC-CA-CTGGCGG-CAAACC--T-G-TAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTT
226 G-TGCGCACACCCCCCGGCCCCCCCGATCGCCGAAA-CCCCAATGC-C-----GTGGTCAG-GTT
* * * ** ** * ** ** * * *
14791559 CT-C-AGGTTTGATGAGG-GATAGG-GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
282 CTCCGACG-ATGCTCCGGCGAT-GGTGCCCCGA-CGAA--GAAAAAT-GCGGCA-CCA--GCACA
** * * ** * *** * * *
14791620 T-CATGTAAGCACACCCCCG-GCCCCCCCGATCGCCGGAACCC-CAATGCCG-CCGATC--AGGT
338 TGCCCG--AGCCCA-GCATGTG-----CTG-TCG-C--AACCCTTGGTTCGGTCTGATCTTA-G-
* ** * * * * * **** **
14791679 TCT-CCAACGATGCTCCG-ACGCTGGT-GCCCTGGCGAA-GAAAAATGTGACACC--AG-CACAT
389 ACTGGGAATGA-ACTTCGTATGCT--TAG-ACTGG-GAATGAACTCCGT-ATGCCTAAGTCA-A-
* ** * * * ** * ** ** * * *
14791737 GCC-CGAGCCTAGCATGTGC-TGC-CGT-AAC--CC-TCGGGCCGGTCTGATCTTAGACTGGGA-
446 CCCACGAAACGAGC--GTGCGGGCAC-TCAGCGGCCAGAGGGGCGGGATGCGC-AAGCCGGGGAT
* ** * * ** * * * * * * *
14791794 -AT--GAACTCCATAAGCTTAGTCTGGGAATGAACTCTG-TA-TGCCTAA--GTCAACCCATGAA
507 CGTCGGGTCCCCCTCTGCGT-G-CT--G-CTGATC-CTGCTACTG-C-AACCCTCGATCCA-G-T
* * * ** * * ** * ** * *
14791852 ACGAGCGT-G-C-GGGCGCT-AAGT-CG-A--CC-AGAGGGGCGGGATGCG-TAAGCCAGGGATC
562 CCGATCTTAGACTGGG-AATGAACTCCGTATGCCTA-A---GC--CAACCGACAAAACAGCGAAC
* ** * * * ** * * * * ** *
14791907 G-GCCGGGTCCCCCT-CTACGTGCTGTCGA-TC-CTACTACCGTAA-CCCTTGATCCGATCTGAT
620 GAG-CGGG---CACTACGCCG-GCAG-AGAGACGGGA-T-GCGCAAGCCGTGGAT-CGATAGGGT
** * * ** * * * ** * * * ******* *
14791967 CTTAGACT-AG-CAATG-A-A-CTCCGTATGCCTAGGCCA-ACCGATGAAACGAGCGGGCGGGCG
676 GGTAG-GTGGGTTTAGGCACATCTTCATATTTCT--G-CATGCCAATG---CCATTTTTATGGCT
* * **** ** * ** * *** * * *** * **
14792026 GGCAGGCGGGCACTAC-ACCG-ACCAGAGAGACGAGATGCGCAAGCCGCGGATCG-ATAGGGTGG
734 TGTA--AATTCA-TACAATGGTCCCTTA-AGCCTTCACGTG-AAGTTTC--ATGGCA-A--GACG
* ** * * * * * * *
14792088 TAGGTGGGTTTAGCCACATCTTCAT-ATTTGTGCGTGCCAATGCCATTTTTATGGCTT-GTA-AA
789 -A-CT-CATTT-TCTA-TTTTTCATGATTT-T---TG--AA--AC-TTTTTACGG-TTCG-AGAT
** * * * * * * * *** *
14792150 TTCATACAATGGTCCCTTAAGCCTT-CACGTGAAGTTTCGTGG--CAAGAC-GACTCGTTTTTTA
838 TTTTTAAAAT--T---TT-----TTGGAAG-G-AGTTT--TGGCCCAAAACTTAGTAG-ACGTGA
14792211 T
888 T
** * *** * ** ****** *** ** **** *
14792212 TTTTCATGATTTTTG-AAACTTTTTACGGTTCGGGATT-TTTTAAAATTTTTTCG-G-A-AGGAG
1 CCTT-GT-ATTTTTGTTGGC-ATGCAC--AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA-
* * ** * * ** * ** *
14792272 TTTTG-GCCCAAATGTGGTAGACGTGATCCTTGTATTTTTGTTGCATACACAAAATAATTCAGCT
60 TTTTGTGACC--ATTTGAAAAAAGTG-TCC--CCA----T-TT-CAGACAC--TTTAA-T-GGCT
**** * * * *** *** *
14792336 AAAAAC-TCGAA-GTGTACAAGAT-T-TTGTGAC-CATTTCAAAAAAGTGTCCCCA-TT-TCAGA
110 ACTGGCAGCAAACCTGTA-AA-ATCTCAAATG-CTC-TTT--AAGGGGTGT---GAGTTCTCA-A
** * ** ** * * *** * * **** *
14792394 CACTTTAATG-GCTACT-GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-AGGGTGTGAG
165 -GGTTTGATGAGGGA-TAGGGGGCCAA--TATAAGGGC-CAAGTAC-C----AGCA-CCCAT-CG
** * ** * ****** *** *** * * * *
14792456 TTC-TCAAGGTTTG-ATGAGGGATAGGGGGCCAATATAAGGGCC-AAGTACCAGC-A-CCCATCG
218 CACATC-ATGTGCGCA-CACCCCCCGGCCCCCCCGAT---CGCCGAA--ACC-CCAATGCCGT-G
** ** * * * * * ** * *
14792516 CACAACATT-TTCGCAC-A--C-CCCGCCA-AG-CCCCCGATCGCCGGAACCCCAATGCTGC-CG
274 GTC-AGGTTCTCCG-ACGATGCTCCGGCGATGGTGCCCCGA-CG-AAGAA---AAATGCGGCAC-
* * * * * *
14792573 GTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCGCAACGAAGAAAAATTCAGCATCAGCACAT
331 --CA-G--C-AC----ATG--CC--CGA----GCC-CAGC-ATG-----TGCTG--TC-GCA-AC
* * ** * ** * *
14792638 GCTCGAGCCCAGCATGTGCTGCCA-C-AACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAAC
367 CCTTG-GTTC-G---GT-CTG--ATCTTAGACT-GG---GA-ATGAACTT---C---G--T--A-
* *
14792701 TCCGTATTCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGG
408 T--G----CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * *
14792766 CGCTTAGCCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCAATCAGGTACCCCTCTGCGTGCT
467 CACTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCCCCCTCTGCGTGCT
* * * * * * *
14792831 ACCGATCCTGCTA-T-CATAACCCTCCG-TTCGGTCTGATCTTAGACTAGGAATCAACTCTC-TA
530 GCTGATCCTGCTACTGC--AACCCT-CGATCCAGTCCGATCTTAGACTGGGAATGAACTC-CGTA
* * *
14792892 TGCTTAAGCC-A---AC-AGAC-G-AAACGAGC--G-A--A------C-G-G-G-C-GG-TG-G-
591 TGCCTAAGCCAACCGACAAAACAGCGAACGAGCGGGCACTACGCCGGCAGAGAGACGGGATGCGC
** *
14792931 -A--CG-GG--C----GGGTGGTAGGTTTGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
656 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGC
14792986 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
721 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* * * * **
14793051 ATGACTCGTTTTCTATTTTTCATGATATTTGAAACTTATTGTGGTTC-AGGATTTTTTAAAATTT
786 ACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTT
*** * **
14793115 TTTCGGAAGGAGTCTTCATCCC-AAACTTGGTAGATATGAT
850 TTT-GGAAGGAGT-TTTGGCCCAAAACTTAGTAGACGTGAT
* * *
14793155 CCTTGTATTTTTGTTGGCATGCATAAAAAAAAATTC-GCTAAAAACTCAAAGTGTACAAGAATTT
1 CCTTGTATTTTTGTTGGCATGC--ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
14793219 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
64 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
* * *
14793284 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGATGGATAGGGGGCCAATAT
129 AATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATAT
* * *
14793349 AAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCTCCCCGG-TCCCCCGATCGCT
193 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCCGATCGCC
* * * * * *
14793413 GAAACCCCTATGCCGTCGATCAGGTTCTCTGGCGATGCTCCTGCGATGGTGCCCCGATGAAGAAA
257 GAAACCCCAATGCCGT-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * * * *
14793478 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCC-TCGATCTGGTCCGATC
321 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTC-GGTCTGATC
* * * *
14793542 TTAGACTGCGAATGAGCTTCATTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
385 TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * * * **
14793607 TGAAACGAGCGTGCGGGCGCTGAACCGGCCAGAGGGGCAGGATGCGCAAGTCGGGAATCGGCCAA
450 CGAAACGAGCGTGCGGGCACT-CAGCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGG
* * * * *
14793672 GTCCTCCTCTACGTGCTACTGATCCTGCTA-TCACAACCCTCTG-TCCAGTTCGATCTTAGACTG
513 GTCCCCCTCTGCGTGCTGCTGATCCTGCTACT-GCAACCCTC-GATCCAGTCCGATCTTAGACTG
* * * * * * ** *
14793735 GAAATAAACTCCGTATGCCTAAGCCAATCAATGAAACGAGCGGGCGGGCGGGAAGGCAGGCACTA
576 GGAATGAACTCCGTATGCCTAAGCCAACCGA-CAAA--A-C-AGCGAAC--G-A-GCGGGCACTA
* * * * * *
14793800 CGCCGGCCAGAGAAACGGGATGTGCAAGTCGTGGATCGATAGGGTGGGAGGTGGATTTCGGCACA
632 CGCCGG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
** *
14793865 TCTTCATATTTCAACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
696 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* ** * *
14793930 CCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTATTCTTCACGATTTTTGAAAC-TTTT
761 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * *
14793994 GCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGTA-GTGAT
826 ACGGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCAAAACTTAGTAG-ACGTGAT
* * * * * *
14794058 TCTTTTATTTTTGTTGGCGTGCATAAAAAAAATCAGCTAAAAACTTGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
14794123 GACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
14794188 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGATGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
14794253 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCTCCCCGG-TCCCCCGATCGCTGA
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCCGATCGCCGA
* * * * * *
14794317 AACCCCTATGCCGTCGATCAGGTTCTCTGGCGATGCTCCTGCGATGGTGCCCCGATGAAGAAAAA
259 AACCCCAATGCCGT-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * * * *
14794382 TGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCC-TCGATCTGGTCCGATCTT
323 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTC-GGTCTGATCTT
* * * * *
14794446 AGACTGCGAATGAGCTTCATTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
387 AGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * * **
14794511 AAACGAGCGTGCGGGCGCTGAACCGGCCAGAGGGGCAGGATGCGCAAGTCGGGAATCGGCCAAGT
452 AAACGAGCGTGCGGGCACT-CAGCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGT
* * * * * *
14794576 CCTCCTCTACGTGCTACTGATCCTGCTA-TCACAACCCTCTG-TCCAGTTCGATCTTAGACTGGA
515 CCCCCTCTGCGTGCTGCTGATCCTGCTACT-GCAACCCTC-GATCCAGTCCGATCTTAGACTGGG
* * * * * ** *
14794639 AATAAACTCCGTATGCCTAAGCCAATCAATGAAACGAGCGGGCGGGCGGGAAGGCAGGCACTACG
578 AATGAACTCCGTATGCCTAAGCCAACCGA-CAAA--A-C-AGCGAAC--G-A-GCGGGCACTACG
* * * * * *
14794704 CCGGCCAGAGAAACGGGATGTGCAAGTCGTGGATCGATAGGGTGGGAGGTGGATTTCGGCACATC
634 CCGG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
** *
14794769 TTCATATTTCAACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
698 TTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * **
14794834 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCAAGATTTTTGAAACTTTTTTT
763 TTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTAC
* * * *
14794899 GGTTCGGGATTCTTTAAAATTTTTTCGAAAGGAGTTTTGGCGCC-AAACTTGGTAGACGTGAT
828 GGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGC-CCAAAACTTAGTAGACGTGAT
*
14794961 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * *
14795026 GGCCATTGGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
14795091 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
14795156 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCGCCCCGACCCCCCCGATCGTC
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CC-CCCCGGCCCCCCCGATCGCC
** *
14795221 GAAAAGCCAATGCCGTCGGTCA-G-T-T-------T-CTCCGGCGATGCTGCCCCGACGAAGAAA
257 GAAACCCCAATGCCGT-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * *
14795275 AATGCGGCACCAGCACAAGCCCGAGCCCAGCATGTGTTGCCGCAACCCTTGGTCCAATCTGATCT
321 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTT-G--------G---T
* *
14795340 TAGACTGGAAATGAACTCCGTATGCTTAAACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
374 T---C-GG---T---CT--G-AT-CTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATG
* *
14795405 AACTCCGTATGCCTAAGTCAACCCACGAAATGAG-GTACGGGCACTCAGCCGGCCAGAGGGGCGG
425 AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCACTCAG-CGGCCAGAGGGGCGG
* *
14795469 GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCTG-TCGATCCTGCTA-TCGTAACC
489 GATGCGCAAGCCGGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCT-GATCCTGCTACT-GCAACC
* * *
14795532 CTC-AGTCCAGTCTGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAACCGACGAAACGA
551 CTCGA-TCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAAC-A
* * * * * *
14795596 GCGAGCGGGCGGGCACTACGCTGGCCAGAGAAACGGGATGCGCAAGCTGTGGATCAATAGGGTGG
614 GCGAACGAGCGGGCACTACGCCGG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
14795661 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG-CATTTTTTATGGCTTGTAAATT
678 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATT
* * *
14795725 CATACAATGCTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
742 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
* ** * * * * *
14795790 ACGATTTTCAAAACTATTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTTGGCCCC
807 ATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCA
*
14795855 AAACTTGGTAGA--TGAAT
871 AAACTTAGTAGACGTG-AT
* * * *
14795872 CCTTGTATCTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCAAAGGGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * *
14795937 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTGACAGTAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
14796002 TCTAAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * ** **
14796067 GGGCCGAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGGATCCCCCGAT-GTTGA
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGA
* *
14796131 AA-CCCAA----AT-GTC--G---T-C--CGA--------CGATGGTCCCCCGACGAAGAAAAAT
259 AACCCCAATGCCGTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * ** * **
14796174 GCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGTAACCCTCAGTCCGGTCCAATCTTAG
324 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTCGGTCTGATCTTAG
* * * *
14796239 ACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAACCCCGTATGCCTAAGTCAACCCACGAA
389 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
** ** * ** * *
14796304 ACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGAAATACGCAAATCGGGGATTGGTCGGGTGC
454 ACGAGCGTGCGGGCACTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGTCGGGTCC
* * * * * *
14796369 CCCTCTGCATGCTG-TCGATCCTGCTGCCGCAACCCTCGGTCCTA-TCCGCTCTTAGACTAGGAA
517 CCCTCTGCGTGCTGCT-GATCCTGCTACTGCAACCCTCGATCC-AGTCCGATCTTAGACTGGGAA
* **
14796432 TGAACTCCGTATGCCTAAGCCAACCGAAAAAACGAGCGGGCGAGCGGGCAGGCGGGTGGGTACTA
580 TGAACTCCGTATGCCTAAGCCAACCGACAAAAC-AGCGAACGAGCGGGCA--C-------TAC--
* * *
14796497 TGCCTGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGAGAGGGTGGTAGGTGGGTTTAGGCACA
633 -GCC-GGCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
14796562 TCTTCATATTTCTACATGCCAATGCTATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
696 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * ** * *
14796627 CCTTCACGTGAAGTTTAATGGCAAGATGACTTGTTTTCTATTCTTCACGATTTTTGAAAC-TTTT
761 CCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTT
* * * **
14796691 GCGGTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGTTGTGAT
826 ACGGTTCGA-GATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCAAAACTTAGTAGACGTGAT
* * * *
14796755 CCTTGTATTTTGGTTGGCATGCATAAAAAAA-TCAGCTAAAAACTCAAAGTGTACAATATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * *
14796819 GACCATTTGAAAAAAATGTCCCCAATTCAGACACTTTAATGGCTACTGGTAGCAAACCTATAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
14796884 TCTCAAATGCTCTTTAAGGGGTGGTGTGAATTCTTC-AGGTTTGATGAGGGATAGGGGGCCAATA
131 TCTCAAATGCTCTTTAA--GG-GGTGTGAGTTC-TCAAGGTTTGATGAGGGATAGGGGGCCAATA
* * * * * * * *
14796948 TAATGGCTAAGTACCAGCACCCATCGCACATCCTGTGCGTACACCTCCCAGCCGCCCCGATCGTC
192 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCC
* * * * * *
14797013 GGAACCCCAATGTCGTCGGTCAGGTTCTCCGATGATGCTCCTGCGATGGTACCTCGACGAAGAAA
257 GAAACCCCAATGCCGT-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * * * * ** *
14797078 AATGCGGCACCAGCACATGCCCGAGTCGAGCAGGTGCTGCCGTAACCCTCAG-TCTGGTCCGATC
321 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTC-GGTCTGATC
* * *
14797142 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAAT
385 TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA-A----G--T
* * * * * *
14797207 GAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAACACACGAAACGAG-CAT
443 CAAC-CC--A--C---GA-----AACG-A-GC-G--TGC---GGGC-ACTCA-G---CG-GCCA-
* ** * *
14797271 GTAGAGGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAAT-GAAAGGGTCCGCCACTG
480 G-AG-GG----G-C-G-----------GGATGCGCAAGCCGGGG-ATCG-TCGGGTCCCCCTCTG
* * ** * * * * * * * * *
14797335 CATGCTACCAATCCTGTTGCCGCAACCCTCGGTTCGGTTCGATCTTAGACTGGGAATTAACTCTG
524 CGTGCTGCTGATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCG
* ** * * *
14797400 TATGCCTAAGCCAACCAACAAAACGAGTAAATGGGCGGGCGGGCGGGCACTATGCCGTCCAGAGA
589 TATGCCTAAGCCAACCGACAAAAC------A---GCGAACGAGCGGGCACTACGCCG-GCAGAGA
* * *
14797465 GATGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCT
644 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
14797530 GCATGCCAATGCCATTTTCATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
709 GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* * * * * **
14797595 TTTCATGGCGAGACAACTCGTTTTCCATTTTTCACGATTTTCAAAACTTTTTACGGTTC-AGGAT
774 TTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGA-GAT
* * *
14797659 TTTTTAAAATTTTTTTGGTAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
838 TTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCAAAACTTAGTAGACGTGAT
* *
14797711 CCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * * *
14797776 GACCATTTGAAAAAAGTGTCCCTATTTAAGACACTTTAATGGCTATTGACAGTAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
14797841 TCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAA
131 TCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
** * *
14797906 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTTGGATCCCCTGATCACCG
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC--GGCCCCCCCGATCGCCG
* **
14797971 AAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCC-GCTGATGGTGCCCCGGTGAAGAAA
258 AAACCCCAATGCCGT-GGTCAGGTTCTCCGACGATGCTCCGGC-GATGGTGCCCCGACGAAGAAA
* * * * *
14798035 AATGCGGCACCAGCACATGGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG-TCTGCTCCGATC
321 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTC-GGTCTGATC
* ** * * *
14798099 GTAGACTCTGAATGAACTCCGTATGCTTAGACTGGGAAGGAACTCCGTATGCCAAAGTCAACCCA
385 TTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * * ** ** *
14798164 CGAAATGAACGTGCGGGCGCTCAGTCGG-CATAGGGGCAGGATGCGAAAGTTGAAGATCAGCCGG
450 CGAAACGAGCGTGCGGGCACTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGG
* * *
14798228 GTCCCCCTCTAC---CTGCTG---C--C-A---CAACCCTCGATCCGGTCTGATCTTAGACTGGG
513 GTCCCCCTCTGCGTGCTGCTGATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTGGG
* * * * * * *
14798281 AATGAACCCCGTATGCCCAAGCCAACTGACGAAACGTACGGGCGATCGGGCGGGCACTACGTCGA
578 AATGAACTCCGTATGCCTAAGCCAACCGAC-AAA---AC-AGCGAACGAGCGGGCACTACGCCG-
* * * *
14798346 CCAGAGAGACGGGATGCGCAAGCAGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCA
637 GCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
** *
14798411 TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTTAATTCATACAATGGTCCCTTAAGCCTTCA
702 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* *
14798476 CGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCACT-ATTTTTGAAAC-TTTTACGGT
767 CGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCA-TGATTTTTGAAACTTTTTACGGT
* * * * *
14798539 TCGGGATTTTTTAAAATTTTTTTGGAATGATTTTTGGCCCCAAACTTGGTAGACGTGAT
831 TCGAGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCAAAACTTAGTAGACGTGAT
* * *
14798598 CCTCGTATTTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
1 CCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
14798663 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTGGCAGCAAACCTGAAAA
65 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
*
14798728 ATCTCAAATGCTCTTTAAAGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
130 ATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
14798793 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CTCCCCGATCGTCGGA
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAA
* * * * **
14798857 ACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGACAATGGTGCCCCGGTGAAGAAAAAT
260 ACCCCAATGCCGT-GGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT
* * * *
14798922 GCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAG
324 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTCGGTCTGATCTTAG
* * * * * *
14798987 ACTGAGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCTGTATGCCAAAGTCAAGCCACGAA
389 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * *
14799052 ATGAGCGTGCGGGCACTCAGCAGGCCAGAGGGGCGAGATGCGCAAGTCGGCGATCAGCCAGGTCC
454 ACGAGCGTGCGGGCACTCAGC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-GTCGGGTCC
* * * * * * * *
14799117 CCCTTTGGGTGCTGTTGATCCTACTGCTGTAACCCTC-AGT-CTGATCTGATCTTAGACTGGGAA
517 CCCTCTGCGTGCTGCTGATCCTGCTACTGCAACCCTCGA-TCCAG-TCCGATCTTAGACTGGGAA
* ** * * * *
14799180 TGAACTCCGTATGCCTAAGCCAACTGACGTAACGAGCGGACGGGCGGGCGGGCACTATGTCGGCC
580 TGAACTCCGTATGCCTAAGCCAACCGACAAAAC-AGC-GA---ACGAGCGGGCACTACGCCGG-C
*
14799245 AGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
639 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
14799310 TTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
704 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * ** *
14799375 TGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCG
769 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCG
* * * * *
14799440 GGATCTTTTAAAATTTTTTTGGATGAAGTTTT-G-----------GTAGACATGAT
834 AGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCAAAACTTAGTAGACGTGAT
* *
14799484 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAATACTCAAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * *
14799549 GACCATTAGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACCGGCAACAAACATGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* **
14799614 TCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * *
14799679 GGGCCAAGTACCAGCACCCATCGCACATCATGTGTGTACACCCCCCTGG-CCCCCTGATCGTCGG
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGATCGCCGA
* * * * * *
14799743 AACACCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTGCCCCGATGAGGAAAAA
259 AACCCCAATGCCG-TGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
*
14799808 T-----ACC-G--CA------A--CC--C---T-C-G--G-------T--CT-GGTCTGATCTTA
323 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTCGGTCTGATCTTA
* * * * * *
14799838 GA-TCGAGAATGAACTTCATATGCTTAGACTGGGAATTAACTCCCTGTGCCTAAGTTAACCCACG
388 GACT-GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * **
14799902 AAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCATAAGCCGGGGATC-TACTGGG
452 AAACGAGCGTGCGGGCACTC-AGCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGT-C-GGG
* * * * * * ** * * * * ** * *
14799966 TGCCCCTTTTCATGCTACCGATCCTATTGCCGCAACCATCGGTCTGGTCTGATCTTAGAATGGGA
514 TCCCCCTCTGCGTGCTGCTGATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGA
** * * * * * * * **
14800031 AAAAACTCTGTGTGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGACGTGCGGGTACTGTGC
579 ATGAACTCCGTATGCCTAAGCCAACCGAC-AAA--A-----C-AGCGAACGAGCGGGCACTACGC
* * * * * *
14800096 CGGCTAGAGAGACCGGATGTGCAAGTCATGGATCGATAGGGTAGTAGGTGGGTTTGGGCACATCT
635 CGGC-AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* ** * * *
14800161 TCATATTTTTGTGTG-CAATGCCATTTCTATGGCTTGTAAATTCATACGATGGTCCTTTAAGCCT
699 TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
* * *
14800225 TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCA
764 TCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACG
* * * *
14800290 GTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTGCC-AAACTTGGTAGATGTGAT
829 GTTCGAGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGG-CCCAAAACTTAGTAGACGTGAT
* * *
14800351 CCTTTTATTTTTATTGGCATGCACAAAAAAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * * *
14800416 GACTATTTGAAAAAGGTGTCTCTATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
14800481 TCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * ** *
14800546 GGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACCGCCCGACCCCCCCGATCATCGGA
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAA
*
14800611 ACCCCAA-----T-G--A-----T-----G-T-CT--GACGATGGTGCCCCGACGAAGAAAAATA
260 ACCCCAATGCCGTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAAT-
** * * * * *
14800654 TTGG-GCCAGCACATGCCTGAACCCAGCATGTGCTGCCGCAACCC-----TCAGTC----C----
324 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTCGGTCTGATCTTAG
* * * *
14800705 A----G--T---C--CG-AT-CTTAGAATGGGAATGAACTCCGTATACCTAAGTCAAGCCACAAA
389 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* ** * * ** * * *
14800757 ACGAGCGTACGGGTGCTTAGTCGACCAGAGGGATGGGATGCGCTAGCCGAGGATCGACTGGGTCC
454 ACGAGCGTGCGGGCACTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGGTCC
* ** * * * * *
14800822 CCCTCTGCGTGCT-ATCGATCCTATTGCCGTAACCCTCAAT-CTGATCCGATCTTAGACTGGGAA
517 CCCTCTGCGTGCTGCT-GATCCTGCTACTGCAACCCTCGATCCAG-TCCGATCTTAGACTGGGAA
* * * * ** * *
14800885 TGAACTTCGTATGCATAAGCCAACCGATGAAACGAGCGGGTGGGCGGGCGGGCGGGCACTACGTC
580 TGAACTCCGTATGCCTAAGCCAACCGA-CAAA--A-C-----AGCGAACGAGCGGGCACTACGCC
* * * * *
14800950 GGCCAGAGAGACAGTATGCACAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTT
636 GG-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*** * *
14801015 CATATTTCTATGTGCCAATGCCATCTTTATGG-TTGTAAATTCTTACAATGGTCCCTTAAGCCTT
700 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
14801079 CACGTGAAGTTTCATGGCAAGACGACTC-GTTTCTATTTTTCATGATTTTGGAAACTTTTTACGG
765 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
* * * * *
14801143 TTTGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
830 TTCGAGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCAAAACTTAGTAGACGTGAT
* *
14801203 CCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGT
1 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
** *
14801268 CCCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAA
66 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
14801333 TCTCAAATGCTCGTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
131 TCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
14801398 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGA
195 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAA
* *
14801463 ACCCC-A----------A-----T--GACG-T-CT--GACGATGGTGCCCTGACGAAGAAAAAAA
260 ACCCCAATGCCGTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAG--AAAAA
* ** ** * * *
14801506 TTG-GG--CCAGCACATGCCCGAACCCAGCATGTGCTACCGCAACCCTCAGTCCAGTCCGATCTT
323 -TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTCGGTCTGATCTT
* * * * * *
14801568 AGAATGGGAATGAACTCCGTATGATTAGACTGGGAATGAACTCCGTATACCTAAGTCAAGCCACA
387 AGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* ** * * ** * * *
14801633 AAACGAGCGTACGGGTGCTTAGTCGACCAGAGGGATGGGATGCGCTAGCCGAGGATCGACTGGGT
452 AAACGAGCGTGCGGGCACTCAG-CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTC-GGGT
* ** * * * * *
14801698 CCCCCTCTGCGTGCT-ATCGATCCTATTGCCGTAACCCTCAAT-CTGATCCGATCTTAGACTGGG
515 CCCCCTCTGCGTGCTGCT-GATCCTGCTACTGCAACCCTCGATCCAG-TCCGATCTTAGACTGGG
* *
14801761 AATGAACTCCGTGTGCCTAAGTCAACC
578 AATGAACTCCGTATGCCTAAGCCAACC
14801788 CACGAAACGA
Statistics
Matches: 11234, Mismatches: 1984, Indels: 1858
0.75 0.13 0.12
Matches are distributed among these distances:
844 23 0.00
846 2 0.00
847 1 0.00
848 1 0.00
849 6 0.00
850 1 0.00
851 11 0.00
852 568 0.05
853 305 0.03
854 23 0.00
855 143 0.01
856 80 0.01
857 8 0.00
858 163 0.01
859 183 0.02
860 221 0.02
861 10 0.00
862 5 0.00
864 3 0.00
865 3 0.00
866 5 0.00
867 252 0.02
869 4 0.00
870 74 0.01
871 147 0.01
872 6 0.00
873 116 0.01
874 8 0.00
875 6 0.00
876 5 0.00
877 4 0.00
878 194 0.02
879 7 0.00
880 11 0.00
881 109 0.01
882 164 0.01
883 212 0.02
884 292 0.03
885 178 0.02
886 108 0.01
887 235 0.02
888 320 0.03
889 177 0.02
890 388 0.03
891 213 0.02
892 55 0.00
893 14 0.00
894 255 0.02
895 474 0.04
896 199 0.02
897 258 0.02
898 42 0.00
899 5 0.00
900 125 0.01
901 163 0.01
902 1137 0.10
903 399 0.04
904 167 0.01
905 14 0.00
906 29 0.00
907 130 0.01
908 10 0.00
909 14 0.00
910 7 0.00
911 229 0.02
912 235 0.02
913 3 0.00
914 14 0.00
915 21 0.00
916 26 0.00
917 6 0.00
918 42 0.00
919 18 0.00
920 127 0.01
921 70 0.01
922 9 0.00
923 6 0.00
924 15 0.00
925 13 0.00
926 14 0.00
927 22 0.00
928 10 0.00
929 21 0.00
930 18 0.00
931 20 0.00
932 11 0.00
933 9 0.00
934 9 0.00
935 7 0.00
936 5 0.00
937 6 0.00
938 11 0.00
939 18 0.00
940 50 0.00
941 36 0.00
942 28 0.00
943 40 0.00
944 26 0.00
945 52 0.00
946 45 0.00
947 25 0.00
948 26 0.00
949 25 0.00
950 25 0.00
951 11 0.00
952 8 0.00
953 20 0.00
954 10 0.00
955 257 0.02
956 108 0.01
957 304 0.03
958 10 0.00
959 103 0.01
960 12 0.00
961 20 0.00
962 27 0.00
963 32 0.00
964 23 0.00
965 17 0.00
966 19 0.00
967 32 0.00
968 25 0.00
969 13 0.00
970 24 0.00
971 38 0.00
972 23 0.00
973 25 0.00
974 6 0.00
975 5 0.00
976 6 0.00
977 4 0.00
978 13 0.00
979 4 0.00
980 5 0.00
981 3 0.00
982 1 0.00
983 1 0.00
985 2 0.00
987 5 0.00
988 1 0.00
989 3 0.00
990 1 0.00
992 4 0.00
993 3 0.00
995 1 0.00
998 1 0.00
1003 1 0.00
1005 1 0.00
1006 1 0.00
1007 13 0.00
1008 17 0.00
1009 15 0.00
1010 6 0.00
1011 10 0.00
1012 17 0.00
1013 13 0.00
1014 6 0.00
1015 6 0.00
1016 3 0.00
1017 7 0.00
1018 2 0.00
1019 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
TCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAA
CCCCAATGCCGTGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC
GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTTCGGTCTGATCTTAGAC
TGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCACTCAGCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGTCGGGTCCCCCT
CTGCGTGCTGCTGATCCTGCTACTGCAACCCTCGATCCAGTCCGATCTTAGACTGGGAATGAACT
CCGTATGCCTAAGCCAACCGACAAAACAGCGAACGAGCGGGCACTACGCCGGCAGAGAGACGGGA
TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
GCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAA
ATTTTTTGGAAGGAGTTTTGGCCCAAAACTTAGTAGACGTGAT
Found at i:14790745 original size:26 final size:26
Alignment explanation
Indices: 14790703--14790755 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14790693 TCGGTTTGAT
14790703 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
14790729 CTTAGACTGGGAGTGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14790755 C
1 C
14790756 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14790926 original size:26 final size:26
Alignment explanation
Indices: 14790890--14790940 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14790880 GGTCCAATCA
*
14790890 TAGATTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
*
14790916 TAGACTGGGAATGAACTCTGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14790941 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.29
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:14791024 original size:185 final size:184
Alignment explanation
Indices: 14790705--14791098 Score: 470
Period size: 185 Copynumber: 2.1 Consensus size: 184
14790695 GGTTTGATCT
* *
14790705 TAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAGTGAACTCCGTATGCCTAAGTCAACCCAC
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * *
14790770 GAAACGAGTGTGCAGGCGCTCAGTCGGCCAGACGGGCAGGATGCGTAAGCCGGGCATCATCCGGG
66 GAAACAAGCGTGCAGGCGCTCAGTCGGCCAAACGGGCAGGATGCGCAAGCCGGGCATCATCCAGG
* * *
14790835 TCCCCCTCTGTGTGCTGCT-GATCCTGCTGCCACAACCCTTGATCTGGTCCAATCA
131 TCCCCCTCTATGTGC-GCTCGATCCTACTGCCACAA-CCTCGATCTGGTCCAATCA
* * *
14790890 TAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCAT
1 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * ** * *
14790955 GAAATAAGCGTGCGGGCGCTCCG-CTGGCCAAAGGGGCAGGATGCGCAAGTTGGGGATCGGT-CA
66 GAAACAAGCGTGCAGGCGCTCAGTC-GGCCAAACGGGCAGGATGCGCAAGCCGGGCATC-ATCCA
* *** * ** *
14791018 GGTCCCCCTCTATGTGCGGTCGATCCTACTGTTGCAACCTCGGTCTGGTCTGATCT
129 GGTCCCCCTCTATGTGCGCTCGATCCTACTGCCACAACCTCGATCTGGTCCAATCA
14791074 TAGACTGGGAATGAACTCCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
14791099 CTAGGCCAAC
Statistics
Matches: 176, Mismatches: 30, Indels: 7
0.83 0.14 0.03
Matches are distributed among these distances:
184 41 0.23
185 134 0.76
186 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.29, T:0.23
Consensus pattern (184 bp):
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACAAGCGTGCAGGCGCTCAGTCGGCCAAACGGGCAGGATGCGCAAGCCGGGCATCATCCAGG
TCCCCCTCTATGTGCGCTCGATCCTACTGCCACAACCTCGATCTGGTCCAATCA
Found at i:14792718 original size:26 final size:26
Alignment explanation
Indices: 14792682--14792733 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
14792672 TCTGATCTGA
14792682 TCTTAGACTGGGAATGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
*
14792708 TCTTAGACTGGGAGTGAACTCCGTAT
1 TCTTAGACTGGGAATGAACTCCGTAT
14792734 GCCTAAGTCA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (26 bp):
TCTTAGACTGGGAATGAACTCCGTAT
Found at i:14792915 original size:901 final size:894
Alignment explanation
Indices: 14790859--14792927 Score: 2842
Period size: 901 Copynumber: 2.3 Consensus size: 894
14790849 CTGCTGATCC
* * ** * *
14790859 TGCTGCCACAACCCTTGATCTGGTCCAATCATAGATTGGGAATGAACTCCGTATGCTTAGACTGG
1 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
** ** *
14790924 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAATAAGCGTGCGGGCGCTCCGCTGGCCAAAGG
66 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGCCAAAGG
* * * * * * *
14790989 GGCAGGATGCGCAAGTTGGGGATCGGTCAGGTCCCCCTCTATGTGCGGTCGATCCTACTGTTGCA
131 GGCGGGATGCGCAAGTCGGGGATCGGTCAGGTCCCCCTCTACGTGCTGTCGATCCTACTATCGTA
* * *
14791054 A-CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAGGCCAACTGACGAAAC
196 ACCCTCGTTC-GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAGGCCAACAGACGAAAC
* * * ** * * * *
14791118 GAGCGGGCAGGCTGGCAGGCATTACGTCGGCCAGAGAGACGGGATACGTAAGCCATGGATCGATA
260 GAGCGGGCGGGCGGGCAGGCACTACACCGACCAGAGAGACGAGATACGCAAGCCACGGATCGATA
* * *
14791183 GGGTGGTAGGTGGGTTTAGGCACATCTACATATTTCTTCATGCCAATTCCATTTTTATGGCTTGT
325 GGGTGGTAGGTGGGTTTAGCCACATCTACATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* * * *
14791248 AAATTCATACAGTGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGATGACTCTTTTTCTCT
390 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTTCTAT
* *
14791313 TTTTCACGATTTTTGAAACCTTTTGCGGTTCGAGATTTTTTAAAATTTTTTGGAAATAGTTTTGG
455 TTTTCACGATTTTTGAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAAGAGTTTTGG
* * *
14791378 CCACAAACCTGGTAGACGTGATGCTTGTGTTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
520 CCACAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAA
* * * * *
14791443 CTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCGCCATTTCAGACATTTTGATGGC
585 CTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
14791508 CACTGGCGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAGGTTTGATGA
650 CACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAGGTTTGATGA
*
14791573 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTAAGCACACCCCC
715 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTAAGCACACCCCC
*
14791638 GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCAACGATGCTCCGACGCTGG
780 GGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCAACGATGCTCCGACGATGG
** * *
14791703 TGCCCTGGCGAAGAAAAATGTGACACCAGCACATGCCCGAGCCTAGCATG
845 TGCCCTAACGAAGAAAAATGTCACACCAGCACATGCCCGAGCCCAGCATG
** * * * * *
14791753 TGCTGCCGTAACCCTCGGGCCGGTCTGATCTTAGACTGGGAATGAACTCCATAAGCTTAGTCTGG
1 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * *
14791818 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGTCGACCAGAGG
66 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGCCAAAGG
* * * * * *
14791883 GGCGGGATGCGTAAGCCAGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCGATCCTACTACCGTA
131 GGCGGGATGCGCAAGTCGGGGATCGGTCAGGTCCCCCTCTACGTGCTGTCGATCCTACTATCGTA
* * * * * *
14791948 ACCCTTGATCCGATCTGATCTTAGACTAGCAATGAACTCCGTATGCCTAGGCCAACCGATGAAAC
196 ACCCTCG-TTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAGGCCAACAGACGAAAC
* *
14792013 GAGCGGGCGGGCGGGCAGGCGGGCACTACACCGACCAGAGAGACGAGATGCGCAAGCCGCGGATC
260 GAGCGGGCGGGCGGGCA----GGCACTACACCGACCAGAGAGACGAGATACGCAAGCCACGGATC
* * *
14792078 GATAGGGTGGTAGGTGGGTTTAGCCACATCTTCATATTTGTGCGTGCCAATGCCATTTTTATGGC
321 GATAGGGTGGTAGGTGGGTTTAGCCACATCTACATATTTCTGCATGCCAATGCCATTTTTATGGC
*
14792143 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACGACTCGTTTT
386 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC-TTTT
* * * *
14792208 T-TATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
450 TCTATTTTTCACGATTTTTGAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTT-GGAAAGAG
** *
14792272 TTTTGGCC-CAAATGTGGTAGACGTGATCCTTGTATTTTTGTT-GCATACACAAAATAATTCAGC
514 TTTTGGCCACAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGC
14792335 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTT
579 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTT
*
14792400 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCAAGG
644 AATGGCCACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTC-AGG
* **
14792465 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATTTTCGC
707 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTAAGC
* * ***
14792530 ACA-CCCC-GCCAAGCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGTGATGC
772 ACACCCCCGGCC---CCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCAACGATGC
* *
14792593 TCCGACGATGGTGCCGC-AACGAAGAAAAAT-TCAGCATCAGCACATGCTCGAGCCCAGCATG
834 TCCGACGATGGTGCC-CTAACGAAGAAAAATGTCA-CACCAGCACATGCCCGAGCCCAGCATG
* *
14792654 TGCTGCCACAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATTCTTAGACTGG
1 TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * *
14792719 GAGTGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCGCTTAGCCGGCCAAAGG
66 GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGCCAAAGG
** * * ** * *
14792784 GGCGGGATGCGCAAGTCGGGGATCAATCAGGTACCCCTCTGCGTGCTACCGATCCTGCTATCATA
131 GGCGGGATGCGCAAGTCGGGGATCGGTCAGGTCCCCCTCTACGTGCTGTCGATCCTACTATCGTA
* * *
14792849 ACCCTCCGTTCGGTCTGATCTTAGACTAGGAATCAACTCTC-TATGCTTAAGCCAACAGACGAAA
196 ACCCT-CGTTCGGTCTGATCTTAGACTAGGAATGAACTC-CGTATGCCTAGGCCAACAGACGAAA
**
14792913 CGAGCGAACGGGCGG
259 CGAGCGGGCGGGCGG
14792928 TGGACGGGCG
Statistics
Matches: 1017, Mismatches: 141, Indels: 27
0.86 0.12 0.02
Matches are distributed among these distances:
894 162 0.16
895 68 0.07
896 1 0.00
898 126 0.12
899 247 0.24
900 88 0.09
901 322 0.32
902 3 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (894 bp):
TGCTGCCACAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTAAGCCGGCCAAAGG
GGCGGGATGCGCAAGTCGGGGATCGGTCAGGTCCCCCTCTACGTGCTGTCGATCCTACTATCGTA
ACCCTCGTTCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAGGCCAACAGACGAAACG
AGCGGGCGGGCGGGCAGGCACTACACCGACCAGAGAGACGAGATACGCAAGCCACGGATCGATAG
GGTGGTAGGTGGGTTTAGCCACATCTACATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTA
AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCTTTTTCTATT
TTTCACGATTTTTGAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTGGAAAGAGTTTTGGC
CACAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATACACAAAAAAATTCAGCTAAAAAC
TCGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCC
ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAACATGTAAGCACACCCCCG
GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGATCAGGTTCTCCAACGATGCTCCGACGATGGT
GCCCTAACGAAGAAAAATGTCACACCAGCACATGCCCGAGCCCAGCATG
Found at i:14794703 original size:902 final size:898
Alignment explanation
Indices: 14792937--14801808 Score: 9634
Period size: 902 Copynumber: 9.9 Consensus size: 898
14792927 GTGGACGGGC
** *
14792937 GGGTGGTAGGTTTGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
*
14793002 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * * *
14793067 TTTTCATGATATTTGAAACTTATTGTGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTCTTC
131 TTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
** ** *
14793132 ATCCCAAACTTGGTAGATATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAAATTC-GCTAA
196 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC--ACAAAAAAATTCAGCTAA
*
14793196 AAACTCAAAGTGTACAAGAATTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
259 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
*
14793261 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTT
324 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
14793326 GATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA
389 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
14793391 CCTCCCCGGTCCCCCGATCG-CTGAAACCCCTATGCCGTCGATCAGGTTCTCTGGCGATGCTCCT
454 CC-CCCCGGCCCCCCGATCGTC-GAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCC-
* *
14793455 GCGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCG
516 GCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
14793520 TAACCCTCGATCTGGTCCGATCTTAGACTGCGAATGAGCTTCATTTGCTTAGACTGGGAATGAAC
581 TAACCCTCGATCTGGTCCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* * *
14793585 TCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAACCGGCCAGAGGGGCAGGAT
646 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
** * * ** * *
14793650 GCGCAAGTCGGGAATCGGCCAAGTCCTCCTCTACGTGCTACTGATCCTGCTATCACAACCCTCTG
711 GCGCAAGTCGGGAATCGGCCGGGTCC-CCTCTGCATGCTACTGATCCTGCTGCCGCAACCCTCAG
* * * *
14793715 TCCAGTTCGATCTTAGACTGGAAATAAACTCCGTATGCCTAAGCCAATCAATGAAACGAGCGGGC
775 TCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGC
* * * *
14793780 GGGCGGGAAGGCAGGCACTACGCCGGCCAGAGAAACGGGATGTGCAAGTCGTGGATCGATA
840 GGGCGGG--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * *
14793841 GGGTGGGAGGTGGATTTCGGCACATCTTCATATTTCAACGTGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
* *
14793906 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* *
14793971 TCTTCACGATTTTTGAAAC-TTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
131 TTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * * * *
14794035 GCCCCAAACTTGGTAGTA-GTGATTCTTTTATTTTTGTTGGCGTGCATAAAAAAAATCAGCTAAA
196 GCCCCAAACTTGGTAG-ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
** *
14794099 AACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATG
260 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
*
14794164 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTG
325 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
14794229 ATGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
390 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * *
14794294 CTCCCCGGTCCCCCGATCG-CTGAAACCCCTATGCCGTCGATCAGGTTCTCTGGCGATGCTCCTG
455 C-CCCCGGCCCCCCGATCGTC-GAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCC-G
* *
14794358 CGATGGTGCCCCGATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGT
517 CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
* * *
14794423 AACCCTCGATCTGGTCCGATCTTAGACTGCGAATGAGCTTCATTTGCTTAGACTGGGAATGAACT
582 AACCCTCGATCTGGTCCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* * *
14794488 CCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAACCGGCCAGAGGGGCAGGATG
647 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATG
** * * ** * *
14794553 CGCAAGTCGGGAATCGGCCAAGTCCTCCTCTACGTGCTACTGATCCTGCTATCACAACCCTCTGT
712 CGCAAGTCGGGAATCGGCCGGGTCC-CCTCTGCATGCTACTGATCCTGCTGCCGCAACCCTCAGT
* * * *
14794618 CCAGTTCGATCTTAGACTGGAAATAAACTCCGTATGCCTAAGCCAATCAATGAAACGAGCGGGCG
776 CCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCG
* * * *
14794683 GGCGGGAAGGCAGGCACTACGCCGGCCAGAGAAACGGGATGTGCAAGTCGTGGATCGATA
841 GGCGGG--GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * *
14794743 GGGTGGGAGGTGGATTTCGGCACATCTTCATATTTCAACGTGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
* *
14794808 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* ** * * *
14794873 TTTTCAAGATTTTTGAAACTTTTTTTGGTTCGGGATTCTTTAAAATTTTTTCGAAAGGAGTTTTG
131 TTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* *
14794938 GCGCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
196 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * * *
14795003 ACTCGAAGTGTACAAGATTTTGTGGCCATTGGAAAAAAGTGTCCCCATTTCAAACACTTTAATGG
261 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
14795068 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
326 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
14795133 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
391 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--
* ** * *
14795198 CCGCCCCGACCCCCCCGATCGTCGAAAAGCCAATGCCGTCGGTCAGTTTCTCCGGCGA---T--G
454 CC-CCCCG-GCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCG
* * * *
14795258 C-----TGCCCCGACGAAGAAAAATGCGGCACCAGCACAAGCCCGAGCCCAGCATGTGTTGCCGC
517 CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
* *
14795318 AACCCTTGGTCCAATCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAAACTGGGAATGAACT
582 AA--C-----CC--TC-GA---T---CT-G----G---TCCG-AT-CTTAGACTGCGAATGAACT
* * *
14795383 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG-GTACGGGC
621 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * **
14795447 ACTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCATGCT-
686 GCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGAATCGGCCGGGT-CCCCTCTGCATGCTA
* ** * *
14795511 GTCGATCCTGCTATCGTAACCCTCAGTCCAG-TCTGATCTTAGACTGGGAATGAACTCCTTATGC
750 CT-GATCCTGCTGCCGCAACCCTCAGTCCAGTTC-GATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
14795575 CTAAGCCAACCGACGAAACGA----GCGAGC--GGGCGGGCACTACGCTGGCCAGAGAAACGGGA
813 CTAAGCCAACCAACGAAACGAGCGGGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGA
* *
14795634 TGCGCAAGCTGTGGATCAATA
878 TGCGCAAGCCGTGGATCGATA
14795655 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG-CATTTTTTATGGCTTG
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA-TTTTTATGGCTTG
* *
14795719 TAAATTCATACAATGCTCCCTTAAGCCTTCACGTGAGGTTTCATGGCAAGACGACTCGTTTTCTA
65 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * * ** *
14795784 TTTTTCACGATTTTCAAAACTATTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGTGTTTT
130 TTTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* *
14795849 GGCCCCAAACTTGGTAGA--TGAATCCTTGTATCTTTGTTGGCATGCACAAAACAATTCAGCTAA
195 GGCCCCAAACTTGGTAGACGTG-ATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
*
14795912 AAACTCAAAGGGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
259 AAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT
* * * * * *
14795977 TGCTATTGACAGTAAACCTGTAAAATCTAAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTT
324 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
* *
14796042 GATGAGGGATAGGGGGCCAATATAAGGGCCGAGTACCAGCACCCATCACACATCATGTGCGCACA
389 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA
* * *
14796107 CCCCCCCGGATCCCCCGAT-GTTGAAA-CCCAA----AT-G-TC--G---T-C--CGA-------
454 -CCCCCCGG-CCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCG
* * *
14796149 CGATGGTCCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGT
517 CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
* * *
14796214 AACCCTC-AGTCCGGTCCAATCTTAGACTGAGAATGAACTCCATATGCTTAGACTGGGAATGAAC
582 AACCCTCGA-TCTGGTCCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* * * *
14796278 CCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGC-GAAA
646 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG-GA
* * * * * *
14796342 TACGCAAATCGGGGATTGGTCGGGTGCCCCTCTGCATGCT-GTCGATCCTGCTGCCGCAACCCTC
710 TGCGCAAGTCGGGAATCGGCCGGGT-CCCCTCTGCATGCTACT-GATCCTGCTGCCGCAACCCTC
* * * * *
14796406 GGTCCTA-TCCGCTCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAA-AAAACGAGC
773 AGTCC-AGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC-AACGAAACGAGC
* * * * *
14796469 GGGCGAGCGGGCAGGCGGGTGGGTACTATGCCTGCCAGAGAGACGGGATGCGCAAGCCGGGGATC
836 --G-G-GCGGGC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
*
14796534 GAGA
895 GATA
* *
14796538 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCTATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
* * *
14796603 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATGACTTGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
*
14796668 TCTTCACGATTTTTGAAAC-TTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
131 TTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
** * *
14796732 GCCCCAAACTTGGTAGTTGTGATCCTTGTATTTTGGTTGGCATGCATAAAAAAA-TCAGCTAAAA
196 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
14796796 ACTCAAAGTGTACAATATTTTGTGACCATTTGAAAAAAATGTCCCCAATTCAGACACTTTAATGG
261 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
14796861 CTACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGTGGTGTGAATTCTTC-AGGTT
326 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGG-GGTGTGAGTTC-TCGAGGTT
* * * *
14796925 TGATGAGGGATAGGGGGCCAATATAATGGCTAAGTACCAGCACCCATCGCACATCCTGTGCGTAC
388 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * * * **
14796990 ACCTCCCAGCCGCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGTTCTCCGATGATGCTCCT
453 ACCCCCCGGCC-CCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCC-
* * * * * *
14797055 GCGATGGTACCTCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGTCGAGCAGGTGCTGCCG
516 GCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* *
14797120 TAACCCTC-AGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
581 TAACCCTCGA-TCTGGTCCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACTGGGAATGAA
* * * * * * ** *** *
14797184 CTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCTTA
645 CTCCGTATGCCTA-A----G--TCAAC-CC--A--C-GAAAC-GAGCGTG----C-GGGCGC-TC
* ** * * *
14797249 AGTCAACACACGAAACGAGCATGTAGAGGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGG
690 AGCCGGC-CA-G--AGGGGCA-G--GA---T--G-C-G-CA-A--GTC--G--G-G-AA-TC---
** * ** * * * *
14797314 GAATGAAAGGGTCCGCCACTGCATGCTACCAATCCTGTTGCCGCAACCCTCGGTTCGGTTCGATC
727 G---G-CCGGGTCC-CCTCTGCATGCTACTGATCCTGCTGCCGCAACCCTCAGTCCAGTTCGATC
* * * *
14797379 TTAGACTGGGAATTAACTCTGTATGCCTAAGCCAACCAACAAAACGAGTAAATGGGCGGGC--GG
787 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAG----CGGGCGGGCGGGG
* * * *
14797442 GCGGGCACTATGCCGTCCAGAGAGATGGGATGCGCAAGCCGTGGATTGATA
848 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * * *
14797493 GGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTCATGGCTTCT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
* * *
14797558 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCGAGACAACTCGTTTTCCAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
** * * *
14797623 TTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTGGTAGGAGTTTTG
131 TTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
*
14797688 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTCAGCTAAAA
196 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * *
14797753 ACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTAAGACACTTTAATGG
261 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * *
14797818 CTATTGACAGTAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
326 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
14797883 TGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
391 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * ** *
14797948 CCCCTTGGATCCCCTGATCACCGAAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGC
456 CCCC--GG-CCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGC
* * *
14798013 TGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGGCCGAGCCCAGCATGTGCTGCCGC
518 -GATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
* * * * *
14798078 AACCCTCGGTCTGCTCCGATCGTAGACT-CTGAATGAACTCCGTATGCTTAGACTGGGAAGGAAC
582 AACCCTCGATCTGGTCCGATCTTAGACTGC-GAATGAACTCCATATGCTTAGACTGGGAATGAAC
* * * * *
14798142 TCCGTATGCCAAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGTCGG-CATAGGGGCAGGAT
646 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
* * * * *
14798206 GCGAAAGT-TGAAGATCAGCCGGGT--CC-C--C---CT-CT-A-CCTGCTGCCACAACCCTC-G
711 GCGCAAGTCGGGA-ATCGGCCGGGTCCCCTCTGCATGCTACTGATCCTGCTGCCGCAACCCTCAG
* * * **
14798258 ATCC-GGTCTGATCTTAGACTGGGAATGAACCCCGTATGCCCAAGCCAACTGACGAAACGTA-CG
775 -TCCAGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACG-AGCG
** * * * *
14798321 GGCGATC--GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCAGTAGATCGATA
837 GGCGGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* **
14798381 GGGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
* *
14798446 TAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTGTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * * *
14798511 TTTTCACTATTTTTGAAAC-TTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAATGATTTTTG
131 TTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* * *
14798575 GCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAA
196 GCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
* *
14798640 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATG
260 AACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * *
14798705 GCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAA-AGGGTGTGAGTTCTCAAGGTTTG
325 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
14798769 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
390 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * *
14798834 CCCCCGGCTCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGACA
455 CCCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCG-CG
* * * *
14798899 ATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGTCGCAA
519 ATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA
* * * * * *
14798964 CCCTCGATCCGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCTTGGACTGGGAATGAACTCT
584 CCCTCGATCTGGTCCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
* * * * *
14799029 GTATGCCAAAGTCAAGCCACGAAATGAGCGTGCGGGCACTCAGCAGGCCAGAGGGGC-GAGATGC
649 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAG-GATGC
* * * ** ** * * *
14799093 GCAAGTCGGCG-ATCAGCCAGGTCCCCCTTTGGGTGCTGTTGATCCTACTGCTGTAACCCTCAGT
713 GCAAGTCGG-GAATCGGCCGGGT-CCCCTCTGCATGCTACTGATCCTGCTGCCGCAACCCTCAGT
* * ** * *
14799157 -CTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGTAACGAGCGGAC
776 CCAGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGC
* * *
14799221 GGGC--GGGCGGGCACTATGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATA
840 GGGCGGGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
*
14799278 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
*
14799343 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * * * *
14799408 TTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATCTTTTAAAATTTTTTTGGATGAAG--TT-
131 TTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
* *
14799470 ---------TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAT
196 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
*
14799526 ACTCAAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
261 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * * *
14799591 CTACCGGCAACAAACATGTAAAATCTCAAATGCACTTTAAGGGGGTGTGAGTTCTTGAGGTTTGA
326 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
14799656 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGTACACC
391 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
14799721 CCCCTGGCCCCCTGATCGTCGGAACACCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCAGCG
456 CCCC-GGCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCC-GCG
* *
14799786 ATGGTGCCCCGATGAGGAAAAAT-----ACC-GCA-A---CC---CTC-G---GT-CTG--GT--
519 ATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA
* * *
14799829 --CT-GATCT--T-AGATC---GA----GAATGAACTTCATATGCTTAGACTGGGAATTAACTCC
584 CCCTCGATCTGGTCCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
* * * * * *
14799881 CTGTGCCTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCA
649 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCG
* * * ** * * * * ** * *
14799946 TAAGCCGGGGATCTACTGGGTGCCCCTTTTCATGCTACCGATCCTATTGCCGCAACCATCGGT-C
714 CAAGTCGGGAATCGGCCGGGT-CCCCTCTGCATGCTACTGATCCTGCTGCCGCAACCCTCAGTCC
* * * ** * *
14800010 TGGTCTGATCTTAGAATGGGAAAAAACTCTGTGTGCCTAAGCCAA-CAGACGAAACGAGCGGGCG
778 AGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCA-ACGAAACGAGCGGGCG
* * ** * * * * *
14800074 GGCGGACGTGCGGGTACTGTGCCGGCTAGAGAGACCGGATGTGCAAGTCATGGATCGATA
841 GGCGG--GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * * ** *
14800134 GGGTAGTAGGTGGGTTTGGGCACATCTTCATATTTTTGTGTG-CAATGCCATTTCTATGGCTTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
* *
14800198 AAATTCATACGATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * *
14800263 TTTTCATGATTTTTGAAACTTTTTGCAGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTG
131 TTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
** * * * *
14800328 GTGCCAAACTTGGTAGATGTGATCCTTTTATTTTTATTGGCATGCACAAAAAAACTCAGCTAAAA
196 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
* * * * * *
14800393 ACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAGGTGTCTCTATTTCAAACACTTTAATGG
261 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* *
14800458 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGA
326 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
14800523 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCATGTGCGCACACC
391 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * *
14800588 GCCCGACCCCCCCGATCATCGGAACCCCAA-----T-GAT---G-TCT-----GA-------CGA
456 CCCCG-GCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGCGA
* ** * * * *
14800631 TGGTGCCCCGACGAAGAAAAATATTGG-GCCAGCACATGCCTGAACCCAGCATGTGCTGCCGCAA
520 TGGTGCCCCGATGAAGAAAAAT-GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAA
*
14800695 CCCTC-A----GT-C---C--AG--TCCG-AT---CT---TA-G---A-A-TGGGAATGAACTCC
584 CCCTCGATCTGGTCCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACTGGGAATGAACTCC
* * * * * * * * ***
14800734 GTATACCTAAGTCAAGCCACAAAACGAGCGTACGGGTGCTTAGTCGACCAGAGGGATGGGATGCG
649 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCG
* * * * * ** * *
14800799 CTAGCCGAGG-ATCGACTGGGTCCCCCTCTGCGTGCTA-TCGATCCTATTGCCGTAACCCTCAAT
714 CAAGTCG-GGAATCGGCCGGGT-CCCCTCTGCATGCTACT-GATCCTGCTGCCGCAACCCTCAGT
* * * * * * *
14800862 -CTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCATAAGCCAACCGATGAAACGAGCGGGT
776 CCAG-TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGC
* * * * *
14800926 GGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACAGTATGCACAAGCCGTTGATCGATA
840 GGGC-GG-GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * *
14800987 GGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTATGTGCCAATGCCATCTTTATGG-TTGT
1 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
*
14801051 AAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTCTAT
66 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * * ** *
14801115 TTTTCATGATTTTGGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTG
131 TTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
*
14801180 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAAAAAAATTCAGCTAAAA
196 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
**
14801245 ACTCAAAGTGTACAAGATTTTGTCCCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
261 ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * *
14801310 CTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCGTTAAGGGGGTGTAAGTTCTCGAGGTTTGA
326 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
14801375 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
391 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
*
14801440 CCCCGGCCCCCCCGATCGTCGGAACCCCAA-----T-GA-C--G-TCT-----GA-------CGA
456 CCCCGG-CCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGCGA
* * * * *
14801483 TGGTGCCCTGACGAAGAAAAAAATTG-GG--CCAGCACATGCCCGAACCCAGCATGTGCTACCGC
520 TGGTGCCCCGATGAAG--AAAAA-TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGT
** * * * *
14801545 AACCCTC-AGTCCAGTCCGATCTTAGAATGGGAATGAACTCCGTATGATTAGACTGGGAATGAAC
582 AACCCTCGA-TCTGGTCCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACTGGGAATGAAC
* * * * * * * * ***
14801609 TCCGTATACCTAAGTCAAGCCACAAAACGAGCGTACGGGTGCTTAGTCGACCAGAGGGATGGGAT
646 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGAT
* * * * * ** *
14801674 GCGCTAGCCGAGG-ATCGACTGGGTCCCCCTCTGCGTGCTA-TCGATCCTATTGCCGTAACCCTC
711 GCGCAAGTCG-GGAATCGGCCGGGT-CCCCTCTGCATGCTACT-GATCCTGCTGCCGCAACCCTC
* * * * * * *
14801737 AAT-CTGATCCGATCTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCCACGAAACGATCG
773 AGTCCAG-TTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCG
*
14801801 TGCGGGCG
837 GGCGGGCG
14801809 CTCAGCCGGC
Statistics
Matches: 6934, Mismatches: 755, Indels: 585
0.84 0.09 0.07
Matches are distributed among these distances:
844 23 0.00
849 2 0.00
850 3 0.00
851 2 0.00
852 583 0.08
853 301 0.04
854 28 0.00
855 137 0.02
856 81 0.01
857 9 0.00
858 4 0.00
859 6 0.00
860 1 0.00
861 5 0.00
862 9 0.00
863 5 0.00
864 2 0.00
865 4 0.00
866 5 0.00
867 252 0.04
868 3 0.00
869 5 0.00
870 73 0.01
871 130 0.02
872 8 0.00
873 2 0.00
874 2 0.00
875 1 0.00
876 1 0.00
877 3 0.00
878 201 0.03
879 6 0.00
880 2 0.00
881 3 0.00
882 164 0.02
883 225 0.03
884 289 0.04
885 168 0.02
886 108 0.02
887 235 0.03
888 318 0.05
889 3 0.00
890 1 0.00
891 7 0.00
892 61 0.01
893 6 0.00
894 4 0.00
895 59 0.01
896 63 0.01
897 263 0.04
898 36 0.01
899 2 0.00
900 3 0.00
901 14 0.00
902 793 0.11
903 360 0.05
904 145 0.02
905 10 0.00
906 39 0.01
907 133 0.02
908 8 0.00
909 13 0.00
910 5 0.00
911 228 0.03
912 239 0.03
913 1 0.00
914 5 0.00
915 2 0.00
916 6 0.00
917 1 0.00
918 1 0.00
919 8 0.00
920 132 0.02
921 74 0.01
922 1 0.00
923 1 0.00
924 1 0.00
925 1 0.00
926 5 0.00
927 6 0.00
928 2 0.00
929 3 0.00
931 5 0.00
932 5 0.00
933 1 0.00
934 2 0.00
935 2 0.00
937 6 0.00
938 3 0.00
939 1 0.00
940 1 0.00
941 1 0.00
942 2 0.00
943 4 0.00
944 2 0.00
945 2 0.00
947 2 0.00
949 3 0.00
950 5 0.00
951 1 0.00
952 2 0.00
954 2 0.00
955 262 0.04
956 97 0.01
957 270 0.04
958 6 0.00
959 91 0.01
960 1 0.00
961 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGT
AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
TTTTCACGATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
CCCCGGCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTCTCCGGCGATGCTCCGCGAT
GGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACC
CTCGATCTGGTCCGATCTTAGACTGCGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGT
ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCA
AGTCGGGAATCGGCCGGGTCCCCTCTGCATGCTACTGATCCTGCTGCCGCAACCCTCAGTCCAGT
TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGGGCGG
GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
Found at i:14795378 original size:26 final size:26
Alignment explanation
Indices: 14795338--14795416 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
14795328 CCAATCTGAT
*
14795338 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14795364 CTTAAACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14795390 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14795416 C
1 C
14795417 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14796263 original size:26 final size:26
Alignment explanation
Indices: 14796234--14796286 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14796224 CCGGTCCAAT
*
14796234 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACCCCATATG
* *
14796260 CTTAGACTGGGAATGAACCCCGTATG
1 CTTAGACTGAGAATGAACCCCATATG
14796286 C
1 C
14796287 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACCCCATATG
Found at i:14797170 original size:26 final size:26
Alignment explanation
Indices: 14797141--14797248 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
14797131 CTGGTCCGAT
14797141 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14797167 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14797193 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14797219 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14797245 CTTA
1 CTTA
14797249 AGTCAACACA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14798130 original size:26 final size:26
Alignment explanation
Indices: 14798100--14798150 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14798090 GCTCCGATCG
* *
14798100 TAGACTCTGAATGAACTCCGTATGCT
1 TAGACTCGGAAGGAACTCCGTATGCT
*
14798126 TAGACTGGGAAGGAACTCCGTATGC
1 TAGACTCGGAAGGAACTCCGTATGC
14798151 CAAAGTCAAC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.22, G:0.25, T:0.25
Consensus pattern (26 bp):
TAGACTCGGAAGGAACTCCGTATGCT
Found at i:14801353 original size:852 final size:850
Alignment explanation
Indices: 14797211--14801808 Score: 4565
Period size: 852 Copynumber: 5.3 Consensus size: 850
14797201 GGGAATGAAC
* * * *
14797211 TCCGTATGCTTAGACTGGGAATGAACTCTGTATGCTTAAGTCAA-CACACGAAACGAGCATGTAG
1 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGC-CACGAAACGAGCGTG-CG
* * * * * * * ** * * *
14797275 AG-GCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAATGAAAGGGTCCGCCACTGCATG
64 GGCGCTCAGTCGACCAGAGGGGCGGGATGCGCTAGCCGAGG-ATCACTGGGTCCCCCTCTGCGTG
* * * * ** * * * *
14797339 CTACCAATCCTGTTGCCGCAACCCTCGGT-TCGGTTCGATCTTAGACTGGGAATTAACTCTGTAT
128 CTATCGATCCTATTGCCGTAACCCTCAATCT-GATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
14797403 GCCTAAGCCAACCAACAAAACGAGTAAATGGGCGGGCGGGCGGGCACTATGCCGTCCAGAGAGAT
192 GCCTAAGCCAACCGACGAAACGAG----CGGGCGGGCGGGCGGGCACTATGTCGGCCAGAGAGAC
* * **
14797468 GGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTTGGTTTAGGCACATCTTCATATTTCTGCA
253 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTG
*
14797533 TGCCAATGCCATTTTCATGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
318 TGCCAATGCCATTTT-ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
* * * * ** *
14797598 CATGGCGAGACAACTCGTTTTCCATTTTTCACGATTTTCAAAACTTTTTACGGTTCAGGATTTTT
382 CATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTT
14797663 TAAAATTTTTTTGG-TAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
447 TAAAATTTTTTTGGAT-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* *
14797727 GCATGCACAAAAATATTCAGCTAAAAACTCCAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
511 GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * * * * *
14797792 TGTCCCTATTTAAGACACTTTAATGGCTATTGACAGTAAACCTGTAAAATCTAAAATGCTCTTTA
576 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
*
14797857 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCA
641 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
** * ** *
14797922 CCCATCGCACATCATGTGCGCACACCCCCCTTGGATCCCCTGATCACCGAAACCCCAATGCCGTC
706 CCCATCGCACATCATGTGCGCACACCCCCC---GCCCCCCCGATCGTCGGAACCCCAA-----T-
* * *
14797987 GATCAGGTTCTCCGACGATGCTCCGCTGATGGTGCCCCGGTGAAGAAAAAT-GCGGCACCAGCAC
762 GAT---G-TCT-----GA-------C-GATGGTGCCCCGGCGAAGAAAAATAGTGGCGCCAGCAC
*
14798051 ATGGCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGCTCCGATCGTAGACTCTGAATG
810 AT-GCCGAACCCAGCATGTGCTGCCGCAA----C---C--CT-C-A--GT---C-C---ATG
* * * * *
14798113 AACTCCGTATGCTTAGACTGGGAAGGAACTCCGTATGCCAAAGTCAACCCACGAAATGAACGTGC
1 ---TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGC
* * * ** ** * * * *
14798178 GGGCGCTCAGTCG-GCATAGGGGCAGGATGCGAAAGTTGAAGATCAGCCGGGTCCCCCTCTACCT
63 GGGCGCTCAGTCGACCAGAGGGGCGGGATGCGCTAGCCGAGGATCA-CTGGGTCCCCCTCTGCGT
* * * * *
14798242 GC--T-G--CC-A----C--AACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACCCCGTAT
127 GCTATCGATCCTATTGCCGTAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * ** * *
14798295 GCCCAAGCCAACTGACGAAACGTA-CGGGCGATCGGGCGGGCACTACGTCGACCAGAGAGACGGG
192 GCCTAAGCCAACCGACGAAACG-AGCGGGCGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGG
* * *
14798359 ATGCGCAAGCAGTAGATCGATAGGGTGGTAGGTGGGTTTAGGCAGATCTTCATATTTCTGTGTGC
256 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGC
*
14798424 CAATGCCATTTTTATGGCTTGTTAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
321 CAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
*
14798489 GGCAAGACGACTCGTTTTGTATTTTTCACT-ATTTTTGAAAC-TTTTACGGTTCGGGATTTTTTA
385 GGCAAGACGACTCGTTTTCTATTTTTCA-TGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
* * *
14798552 AAATTTTTTTGGAAT-GATTTTTGGCCCCAAACTTGGTAGACGTGATCCTCGTATTTTTTTTTGG
449 AAATTTTTTTGG-ATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGG
* *
14798616 CATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
512 CATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
14798681 GTCCCCATTTCAGACACTGTAATGGCTACTGGCAGCAAACCTGAAAAATCTCAAATGCTCTTTAA
577 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* *
14798746 -AGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
642 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* *
14798810 CCATCGCACATCATGTGCGCACACCCCCCGGCTCCCCGATCGTCGGAACCCCAATGCCGTCGGTC
707 CCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAA-----T--G--
* * * *
14798875 AGGTTCTCCGGCGATGCTTCGACAATGGTGCCCCGGTGAAGAAAAAT-GCGGCACCAGCACATGC
763 A-----T-----G-T-C-T-GACGATGGTGCCCCGGCGAAGAAAAATAGTGGCGCCAGCACATGC
* *
14798939 CTGAGCCCAGCATGTGCTGTCGCAACCCTCGATCCGGTCTGATCTTAGACTGAGAATG
814 C-GAACCCAGCATGTGCTGCCGCAACCCTC-A--------G-TC-----C-----ATG
* * * *
14798997 AACTCCGTATGCTTGGACTGGGAATGAACTCTGTATGCCAAAGTCAAGCCACGAAATGAGCGTGC
1 ---TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGC
* * * * * ** * *
14799062 GGGCACTCAG-CAGGCCAGAGGGGCGAGATGCGCAAGTCG-GCGATCAGCCAGGTCCCCCTTTGG
63 GGGCGCTCAGTC-GACCAGAGGGGCGGGATGCGCTAGCCGAG-GATCA-CTGGGTCCCCCTCTGC
* * * * * *
14799125 GTGCTGTTGATCCTACTGCTGTAACCCTCAGTCTGATCTGATCTTAGACTGGGAATGAACTCCGT
125 GTGCTATCGATCCTATTGCCGTAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAACTCCGT
* * * *
14799190 ATGCCTAAGCCAACTGACGTAACGAGCGGACGGGCGGGCGGGCACTATGTCGGCCAGAGAGATGG
190 ATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGG
***
14799255 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATG
255 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
14799320 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
320 CCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* ** * *
14799385 TGGCAAGACAACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATCTTTTA
384 TGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
* *
14799450 AAATTTTTTTGGATGAAG--TT----------TTGGTAGACATGATCCTTGTATTTTTGTTGGCA
449 AAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA
* *
14799503 TGCACAAAAAAATTCAGCTAAATACTCAAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGT
514 TGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT
* * * *
14799568 CCCCATTTCAGACACTTTAATGGCTACCGGCAACAAACATGTAAAATCTCAAATGCACTTTAAGG
579 CCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
*
14799633 GGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
644 GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * * * ** * * *
14799698 ATCGCACATCATGTGTGTACACCCCCCTGGCCCCCTGATCGTCGGAACACCAATGCCGCCGGTC-
709 ATCGCACATCATGTGCGCACACCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGATGTCTGACG
* * * *** * * * * * * *
14799762 A-GGTTCTCCGGCGATGCTCCAGCGATGGT-GCCCCGATGAGGAAAAATACCGCAACCC-TC-GG
773 ATGGTGCCCCGGCGAAG----AAAAATAGTGGCGCC----A-G-CACATGCCG-AACCCAGCATG
* * * *
14799823 T-CTG--GTCTGA-TCTTAGATCGAGAATG
827 TGCTGCCG-C-AACCCTCAG-TC---CATG
* * * * * * *
14799849 AACTTCATATGCTTAGACTGGGAATTAACTCCCTGTGCCTAAGTTAACCCACGAAACGAGCGTGC
1 ---TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGC
** * * * * * * *
14799914 GGGCGCTCAACCGGCCAGAGGGGCGGGATGC-ATAAGCCGGGGATCTACTGGGTGCCCCTTTTCA
63 GGGCGCTCAGTCGACCAGAGGGGCGGGATGCGCT-AGCCGAGGATC-ACTGGGTCCCCCTCTGCG
* * * ** * * * ** * *
14799978 TGCTACCGATCCTATTGCCGCAACCATCGGTCTGGTCTGATCTTAGAATGGGAAAAAACTCTGTG
126 TGCTATCGATCCTATTGCCGTAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
14800043 TGCCTAAGCCAACAGACGAAACGAGCGGGCGGGCGGACGTGCGGGTACTGTGCCGGCTAGAGAGA
191 TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-G--G-GCGGGCACTATGTCGGCCAGAGAGA
* * * * * * *
14800108 CCGGATGTGCAAGTCATGGATCGATAGGGTAGTAGGTGGGTTTGGGCACATCTTCATATTTTTGT
252 CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGT
* *
14800173 GTG-CAATGCCATTTCTATGGCTTGTAAATTCATACGATGGTCCTTTAAGCCTTCACGTGAAGTT
317 GTGCCAATGCCATTT-TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * **
14800237 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCAAGATTTT
381 TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTT
* ** * * *
14800302 TTAAAATTTTTTTGGAAGGAGTTTTGGTGCCAAACTTGGTAGATGTGATCCTTTTATTTTTATTG
446 TTAAAATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * * *
14800367 GCATGCACAAAAAAACTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACTATTTGAAAAAGG
511 GCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * * *
14800432 TGTCTCTATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTA
576 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
14800497 AGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAA
641 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* *
14800562 CCCATCGCACATCATGTGCGCACACCGCCCGACCCCCCCGATCATCGGAACCCCAATGATGTCTG
706 CCCATCGCACATCATGTGCGCACACCCCCCG-CCCCCCCGATCGTCGGAACCCCAATGATGTCTG
* *
14800627 ACGATGGTGCCCCGACGAAGAAAAATATTGG-GCCAGCACATGCCTGAACCCAGCATGTGCTGCC
770 ACGATGGTGCCCCGGCGAAGAAAAATAGTGGCGCCAGCACATGCC-GAACCCAGCATGTGCTGCC
14800691 GCAACCCTCAGTCCA-G
834 GCAACCCTCAGTCCATG
* * * *
14800707 TCCG-AT-CTTAGAATGGGAATGAACTCCGTATACCTAAGTCAAGCCACAAAACGAGCGTACGGG
1 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGG
* * **
14800770 TGCTTAGTCGACCAGAGGGATGGGATGCGCTAGCCGAGGATCGACTGGGTCCCCCTCTGCGTGCT
66 CGCTCAGTCGACCAGAGGGGCGGGATGCGCTAGCCGAGGATC-ACTGGGTCCCCCTCTGCGTGCT
* *
14800835 ATCGATCCTATTGCCGTAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAACTTCGTATGCA
130 ATCGATCCTATTGCCGTAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
14800900 TAAGCCAACCGATGAAACGAGCGGGTGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACAGT
195 TAAGCCAACCGACGAAACGAGC----GGGCGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGG
* * * *
14800965 ATGCACAAGCCGTTGATCGATAGGGTGGTAGGTGGGTTTATGCACATCTTCATATTTCTATGTGC
256 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGC
*
14801030 CAATGCCATCTTTATGG-TTGTAAATTCTTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
321 CAATGCCAT-TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* *
14801094 GGCAAGACGACTCG-TTTCTATTTTTCATGATTTTGGAAACTTTTTACGGTTTGGGATTTTTTAA
385 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA
* *
14801158 AATTTTTTCGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTAT
450 AATTTTTTTGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
**
14801223 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTCCCCATTTGAAAAAAGTGTC
515 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* *
14801288 CCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCGTTAAGGG
580 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
*
14801353 GGTGTAAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
645 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
*
14801418 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGACGTCTGACGA
710 TCGCACATCATGTGCGCACACCCCCC-GCCCCCCCGATCGTCGGAACCCCAATGATGTCTGACGA
* * * * *
14801483 TGGTGCCCTGACGAAGAAAAAAATTGG-GCCAGCACATGCCCGAACCCAGCATGTGCTACCGCAA
774 TGGTGCCCCGGCGAAGAAAAATAGTGGCGCCAGCACATG-CCGAACCCAGCATGTGCTGCCGCAA
14801547 CCCTCAGTCCAGTCCGATCTTAGAATGGGAATG
838 -CC-C--T-CAGT-C---C-----------ATG
* * * *
14801580 AACTCCGTATGATTAGACTGGGAATGAACTCCGTATACCTAAGTCAAGCCACAAAACGAGCGTAC
1 ---TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGC
* * **
14801645 GGGTGCTTAGTCGACCAGAGGGATGGGATGCGCTAGCCGAGGATCGACTGGGTCCCCCTCTGCGT
63 GGGCGCTCAGTCGACCAGAGGGGCGGGATGCGCTAGCCGAGGATC-ACTGGGTCCCCCTCTGCGT
*
14801710 GCTATCGATCCTATTGCCGTAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAACTCCGTGT
127 GCTATCGATCCTATTGCCGTAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * *
14801775 GCCTAAGTCAACCCACGAAACGATCGTGCGGGCG
192 GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
14801809 CTCAGCCGGC
Statistics
Matches: 3140, Mismatches: 415, Indels: 307
0.81 0.11 0.08
Matches are distributed among these distances:
852 583 0.19
853 311 0.10
854 22 0.01
855 137 0.04
856 80 0.03
857 14 0.00
858 2 0.00
859 15 0.00
860 3 0.00
861 4 0.00
862 17 0.01
863 6 0.00
864 3 0.00
865 6 0.00
866 10 0.00
867 260 0.08
868 5 0.00
869 15 0.00
870 3 0.00
871 3 0.00
872 10 0.00
873 1 0.00
874 11 0.00
875 2 0.00
876 4 0.00
877 3 0.00
878 201 0.06
880 3 0.00
881 1 0.00
882 2 0.00
883 4 0.00
884 159 0.05
885 171 0.05
886 107 0.03
887 183 0.06
888 311 0.10
889 5 0.00
890 2 0.00
891 1 0.00
892 59 0.02
893 1 0.00
894 3 0.00
895 1 0.00
896 4 0.00
897 256 0.08
898 33 0.01
899 2 0.00
903 3 0.00
904 37 0.01
905 60 0.02
906 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (850 bp):
TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAGCCACGAAACGAGCGTGCGGG
CGCTCAGTCGACCAGAGGGGCGGGATGCGCTAGCCGAGGATCACTGGGTCCCCCTCTGCGTGCTA
TCGATCCTATTGCCGTAACCCTCAATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
AAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCG
CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATG
CCATTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
ACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTT
TTTGGATGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
AAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCGCCCCCCCGATCGTCGGAACCCCAATGATGTCTGACGATGGTGCC
CCGGCGAAGAAAAATAGTGGCGCCAGCACATGCCGAACCCAGCATGTGCTGCCGCAACCCTCAGT
CCATG
Found at i:14801595 original size:26 final size:26
Alignment explanation
Indices: 14801566--14801615 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14801556 CAGTCCGATC
14801566 TTAGAATGGGAATGAACTCCGTATGA
1 TTAGAATGGGAATGAACTCCGTATGA
*
14801592 TTAGACTGGGAATGAACTCCGTAT
1 TTAGAATGGGAATGAACTCCGTAT
14801616 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.14, G:0.26, T:0.28
Consensus pattern (26 bp):
TTAGAATGGGAATGAACTCCGTATGA
Found at i:14801893 original size:159 final size:159
Alignment explanation
Indices: 14801592--14801967 Score: 396
Period size: 159 Copynumber: 2.4 Consensus size: 159
14801582 CTCCGTATGA
* * * * * * * *
14801592 TTAGACTGGGAATGAACTCCGTATACCTAAGTCAAGCCACAAAACGAGCGTACGGGTGCTTAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCC
* * *
14801657 GACCAGAGGGATGGGATGCGCTAGCCGAGGATCGACTGGGTCCCCCTCTGCGTGCTATCGATCCT
66 GACCAGAGGGACGGGATACGCAAGCCGAGGATCGACTGGGTCCCCCTCTGCGTGCTATCGATCCT
* **
14801722 ATTGCCGTAACCCTCAATCTGATC-CGATC
131 ACTGCCACAACCCTCAATCTGATCTC-ATC
* *
14801751 TTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCCACGAAACGATCGTGCGGGCGCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCC
* * ** * * * * *
14801816 GGCCAGAGGGGCGGGATACGCAAGTTGGGGATCG-GTCGGGTCCCCCTCTGTGTGCTGTCGATCT
66 GACCAGAGGGACGGGATACGCAAGCCGAGGATCGACT-GGGTCCCCCTCTGCGTGCTATCGATCC
* *** *
14801880 TGCTGCCACAACCCTTGGTCTGGTCTCATC
130 TACTGCCACAACCCTCAATCTGATCTCATC
* * * * * *
14801910 TTAGACTAGGAATGAACTCCGTATGCCTAGGCCAACCAATGAAACGAACGGGCGGGCG
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCG
14801968 GGCGTGCGGT
Statistics
Matches: 178, Mismatches: 37, Indels: 4
0.81 0.17 0.02
Matches are distributed among these distances:
158 1 0.01
159 176 0.99
160 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.29, T:0.21
Consensus pattern (159 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCC
GACCAGAGGGACGGGATACGCAAGCCGAGGATCGACTGGGTCCCCCTCTGCGTGCTATCGATCCT
ACTGCCACAACCCTCAATCTGATCTCATC
Found at i:14803568 original size:26 final size:26
Alignment explanation
Indices: 14803530--14803580 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14803520 TGGTCTGATC
14803530 TTAGACTGCGAATGAACTCCGTATGG
1 TTAGACTGCGAATGAACTCCGTATGG
*
14803556 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGCGAATGAACTCCGTATG
14803581 CCCAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
TTAGACTGCGAATGAACTCCGTATGG
Found at i:14806157 original size:903 final size:902
Alignment explanation
Indices: 14804404--14807836 Score: 4706
Period size: 903 Copynumber: 3.9 Consensus size: 902
14804394 AATGTGCTAT
* * * * *
14804404 CGCAACCCTCGGTCCGGTCCGATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCTAACCGCCA
1 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
14804469 AAACGAGCAGGCGGGCAGGCAGGCGGGCACTACGTCGACCAGTGAGATGGGATGCGCAAGCCGTG
66 AAACGAGCGGGCGGGCGGGC-GGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTG
* *
14804534 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTCTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
14804599 TGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGCTTCCTGGCAAGACGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
*
14804664 TTTTCTATTTTTCATGATTTTTGAAACTTTTTTCGGTTC-GAGATTTTTTAAAATTTTTTC-GAA
260 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTTTCAG-A
*
14804727 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTT-TTGGCATGCACAAAAACAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAATAT
* *
14804791 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGAC
* *
14804856 ACTTTAATGGCTACTGGCAGCAAACCGGTAAAATCTCAAATTCTCTTTAAGGGGGTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
14804921 CGAGGTTTGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGTACCAGCACCC-TTCGCTCATCAT
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATT-GCACATCAT
* * * * *
14804985 GTGCGCACACCCCCCCCG-GCCCCCCGATCGTCGAAACTCCAATGCCGCCTGTCAGGTTCTCCGG
583 GTGCGCACA-CCCCCCCGACCCCCCCGATCGCCGAAACCCCAATGCCCCCGGTCAGGTTCTCCGG
* * * * *
14805049 CGATGCCCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGACTGAGCCCAGCA
647 TGATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
* **
14805114 TGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACT
712 TGTGCTGCTGTAACCCTCGGTCCGGTCCGATCTCAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * * * *
14805179 AGAAATGAACTCCGTATGCCTAAGTGAACCAATGAAATGAGCGTGCAGGCGCTCAACCGGCCAGA
777 GGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * **
14805244 GGGTCGGGATGTGCAAGCCGGGGATCGACCGGGTCCCCCTCTGTGTACTGTCGATCCTACTAC
842 GGGACGGGATG-GCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTACT-TCGATCCTACTAC
* * * * *
14805307 CACAACCCTTGGTCTGGTCTGATCGTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
14805372 AAACGAGCGGGCGGGTGGGCGTGCGGGCACTATGCCGACCAGAGAGACGAGATGCGCAAGCCGTG
66 AAACGAGCGGGCGGGCGGGCG-GCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTG
* * * ** *
14805437 GATCGATATGGTGGGT-GGTAGCTTTAGGCACATCTTCATATTTCTGTGTTCCAATGCCATTTTT
130 GATCGATAGGGT-GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
14805501 ATGGCTTGTAAATTCATACAATTGTCCCTTAAGGCTTCCCGTGAAGTTTCATGGCAAGACGACTC
194 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * *
14805566 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGA-ATTTTTTTAAATTTTTTCATA
259 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTTTCAGA
* * * * ** * *
14805630 AGGAGTTTTAGCTCGAATCTTGGTAGATGTGATCTTTGTATTTTT-TTGGCATACACAAAAATAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAATAT
14805694 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGAC
* *
14805759 ACTTTAATGGCTGCTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
14805824 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
* * * * *
14805889 TGCGCACAGCCCCCCGACCCCCCCAATTGCCGGAACCCCAATGCCCCCGATCAGGTTCTCCGGTG
584 TGCGCACACCCCCCCGACCCCCCCGATCGCCGAAACCCCAATGCCCCCGGTCAGGTTCTCCGGTG
** * *
14805954 ATTTTCCAGCGATGGTGCCCC-AGCGAAGAAAAATGCGACACCAACACATGCCCGAGCCCAGTAT
649 ATGCTCCAGCGATGGTGCCCCGA-CGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCAT
* * *
14806018 GTGCTGCTGTAACCCTCGGTCTGGTCCGATCTCAGATTGGGAATGAACTCTGTATGCTTAGACTG
713 GTGCTGCTGTAACCCTCGGTCCGGTCCGATCTCAGACTGGGAATGAACTCCGTATGCTTAGACTG
*
14806083 GAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCGGCCAGAG
778 GAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAG
* *
14806148 GGGCGGGATGGCAAGTCGGGGATCGGTCGGGTCCCCCTCTACGTGCTAC-T-GATCCTACTGC
843 GGACGGGATGGCAAGTCGGGGATCGGTCGGGTCCCCCTCT--GTG-TACTTCGATCCTACTAC
* ** * *
14806209 TGCAACCCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGCATGCCTAAGCCAACCGACC
1 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* ** * *
14806274 AAACGA----GC-GG-GTG-GGCGGGCACTATATCGGCCAGAGAGATGGGATGCGCAAGCCGTGG
66 AAACGAGCGGGCGGGCGGGCGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGG
* *
14806332 ATCGATTGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGGCATTTTTAT
131 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
14806397 GGCTTGTAAATTCATACTATGGTCCCTTAAGCCTTCACGTGTAGTTTCATGGCAAGACGACTCAT
196 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* *
14806462 TTTCTATTTTTCATGATTTTTGAAACTTTTTACAGTTCA-AGATTTTTTTAAAATTTTTTCGGAA
261 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGA-TTTTTTAAAATTTTTTCAGAA
*
14806526 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCGCAACAAA-A-
325 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAA-AAATAT
* *
14806589 TCAGCTAAAAAGTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGAC
*
14806654 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTCAAGGGGGTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
14806719 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCT-CAGATCAT
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT-TGCACATCAT
** * *
14806783 GTGCGCACACCCCCCCGACCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCC---
583 GTGCGCACACCCCCCCGACCCCCCCGATCGCCGAAACCCCAATGCCCCCGGTCAGGTTCTCCGGT
*
14806845 ---G----A-CGATGGTGCCCCGACGAAGAAAAATG-GAACACCAGCATATGCCCGAGCCCAGCA
648 GATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCG-ACACCAGCACATGCCCGAGCCCAGCA
* *
14806901 TGTGCTACTGTAACCCTCAGTCC-G---G-T-T----C-------G-A-T-C--A----TAGACT
712 TGTGCTGCTGTAACCCTCGGTCCGGTCCGATCTCAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
14806940 GGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTACGGGCGTTCAGCCGGCCAAA
777 GGAAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * *
14807005 GGGACAGGATGAGCAAGTCGGGGATCGGTCGGGTCCCCCTTTGTGTGCTACCGATCCTGCTAC
842 GGGACGGGATG-GCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTACT-TCGATCCTACTAC
* * *
14807068 CGCAACCCTCGATCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATG
1 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
14807133 AAACGAGCGGGTGGGCGGGCGTGCGGGCACTACGTCGACTAGAGTGACCGGATGCGCAAGCCGTG
66 AAACGAGCGGGCGGGCGGGCG-GCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTG
*
14807198 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTA
130 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *** *
14807263 TGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGTGGGAAGACTCG
195 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * *
14807328 TTTTCTATTTTTCATGATTTTTGAAACATTTTGCGGTTC-GGGATTTTTTAAAATTTTTTCGGAA
260 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTTTCAGAA
*
14807392 GGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATT
325 GGAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAATATT
*
14807457 CAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACA
390 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACA
* * ** * * *
14807522 CTTTAACGGCTACTGGCTGCAAACCTGTAAAATCTCAAATTTTCTTGAGGGGGGTCTGAGTTCTC
455 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
14807587 GAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACTAGCTCCCATTGCACATCATGT
520 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGT
* * *
14807652 GCGCACACCCCCCCGTCCCCCCCGATCGCCGAAACCCCAATGCCACCGGTCAGGTTCTTCGGTGA
585 GCGCACACCCCCCCGACCCCCCCGATCGCCGAAACCCCAATGCCCCCGGTCAGGTTCTCCGGTGA
* * *
14807717 TGCTCC-GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCGAGCTTG
650 TGCTCCAG-CGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
* *
14807781 TGCTG-TCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
714 TGCTGCT-GTAACCCTCGGTCCGGTCCGATCTCAGACTGGGAATGAACTCCGTATGC
14807837 CCAAACCAAC
Statistics
Matches: 2225, Mismatches: 232, Indels: 146
0.85 0.09 0.06
Matches are distributed among these distances:
856 2 0.00
857 3 0.00
858 74 0.03
859 101 0.05
862 1 0.00
863 1 0.00
864 2 0.00
865 6 0.00
866 81 0.04
867 426 0.19
873 1 0.00
877 1 0.00
878 67 0.03
879 3 0.00
880 1 0.00
882 1 0.00
883 3 0.00
884 68 0.03
885 2 0.00
888 1 0.00
893 4 0.00
894 189 0.08
895 297 0.13
896 16 0.01
897 6 0.00
898 3 0.00
900 1 0.00
902 109 0.05
903 742 0.33
904 10 0.00
905 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.26
Consensus pattern (902 bp):
CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
AAACGAGCGGGCGGGCGGGCGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAGAGATTTTTTAAAATTTTTTCAGAAG
GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTG
CGCACACCCCCCCGACCCCCCCGATCGCCGAAACCCCAATGCCCCCGGTCAGGTTCTCCGGTGAT
GCTCCAGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTG
CTGCTGTAACCCTCGGTCCGGTCCGATCTCAGACTGGGAATGAACTCCGTATGCTTAGACTGGAA
ATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGA
CGGGATGGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTACTTCGATCCTACTAC
Found at i:14808644 original size:707 final size:714
Alignment explanation
Indices: 14807068--14809965 Score: 3898
Period size: 707 Copynumber: 4.1 Consensus size: 714
14807058 ATCCTGCTAC
* * *
14807068 CGCAACCCTCGATCC-GGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAT
1 CGCAACCCTCGGTCCAGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* * * *
14807132 GAAACGAGCGGGTGGGCGGGCGTGCGGGCACTACGTC-GACTAGAGTGACCGGATGCGCAAGCCG
65 GAAACGA---GGTGGGC-GGCGAGCGGGCACTACGTCAG-CCAGAGAGACGGGATGCGCAAGCCG
14807196 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTT
125 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTT
* * *** *
14807261 TATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACCTGAAGTTTCATGGTGGGAAGACT
190 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
14807326 CGTTTTCTATTTTTCATGATTTTTGAAACATTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA
255 CGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
* *
14807391 AGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTGTTGGCATGCACAAAAATAT
320 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AA
*
14807456 TCAGCTAAAAACTCGAAGTGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGAC
384 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGAC
* * ** * * *
14807521 ACTTTAACGGCTACTGGCTGCAAACCTGTAAAATCTCAAATTTTCTTGAGGGGGGTCTGAGTTCT
449 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * *
14807586 CGAGGTTTGATGAGGGATAGGGGGCCATTATAAGGGCCAAGTACTAGCTCCCATTGCACATCATG
514 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATG
* * * *
14807651 TGCGCACACCCCCCCGTCCCCCCCGATCGCC-GAAACCCCAATGCCACCGGTCAGGTTCTTCGGT
579 CGCGCACACCCCCCCGGCCCCCCCGATCGCCAGAAACCCCAATGCCACCGGTCAGGTTCTCCGGC
* * * *
14807715 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCGAGCTT
644 GATGCTCCGACGATGGTGCCCCGATGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
14807780 GTGCTG
709 GTGCTG
* * * * *
14807786 TCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCCAAACCAACCGAC
1 -CGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* *
14807851 GAAACGA-GTGGGC-G-G-GC--G--TTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
65 GAAACGAGGTGGGCGGCGAGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* *
14807908 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATTCCAATGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGG
14807973 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * *
14808038 TCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGTAGGAG
260 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* *
14808103 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGTAGAAAACAAATCAGC
325 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AAATCAGC
* *
14808167 TAAAAACTCAAAGTGTACAAGATTTTGTGACAATTTGAAAAAAGTGTCCCCATTCCAGACACTTT
389 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTT
* * *
14808232 AATGGCTACTGGGAGCAAACCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * * *
14808297 TTTGATGAGAGATAGGGGGCCAATATAAGGGTCAAGTACCAGCACCCATCGCACATCATGTGAGC
519 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGCGCGC
** * * *
14808362 ACA-CCCCTTGGCCCCCCCGATCGTC-GAAACCCCAATGCCGCCGGTCAGG-TCTTCGGCGATGC
584 ACACCCCCCCGGCCCCCCCGATCGCCAGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGC
* * * * * * *
14808424 TCCGATGATGTTGTCCCGGTGAAAAAAAATACGGCACCAGCAAATGCCCAAGCCCAGCATGTGCT
649 TCCGACGATGGTGCCCCGATGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
14808489 G
714 G
* * * * * *
14808490 CGGTAACCCTCGATCTAGTTCGATCTTAGACTGAGAATGAACTCCGTATGCCTATGCCAATCGAT
1 C-GCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAT
* *
14808555 GAAATGA-GTGGGC-G-G-GCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGTCGTGGAT
65 GAAACGAGGTGGGCGGCGAGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
* ** *
14808616 CGATAGTGTGGTAGGTGGGTTT-GGCACATCTTCATATTAATGCGTGCCAATGCCATTTTTATGG
130 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGG
*
14808680 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
195 CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * * * *
14808745 TCTATTTTTCATGA-TTTCAAAACTATTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGTG
260 TCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
*
14808809 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAAATCAGC
325 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATCAGC
* **
14808874 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTTAGACACTTT
389 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTT
*
14808939 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGG
454 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * * * *
14809004 TTTGATGAGGGATAGGGGGCCAATTTAAGGGCCACGTACAAGTACCCATCACACATCATGCGTGC
519 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGCGCGC
* * * * * * * * *
14809069 ACA-TCCCCC--TCCCTCTGATCGCCTG-AACCCCAATGTCATCGATCAGGTTCTCCGACGATGC
584 ACACCCCCCCGGCCCCCCCGATCGCCAGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGC
* * * * **
14809130 TCTGGCGATGGTTCCCCGATGAAGAAAAATGCGGCACCAGCACATGCTTGAGCCCAGCATGTGCT
649 TCCGACGATGGTGCCCCGATGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCT
*
14809195 AT
714 -G
* * *
14809197 CGCAACCCTTGGTCCAGTTCGATCTTAGACTGGGAATGAATTCTGTATGCCTAAGCCAACCGATG
1 CGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
* * * *
14809262 AAACGAGCGGGCGGGCGAGCGAGCGGGCACTACGCCAGCCAGAGAGACGGGATGTGCAAGTCGTG
66 AAACGA---GGTGGGCG-GCGAGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTG
* *
14809327 GATCGATAGGGTGGTAGGTGGGTTTAGGCATATCTTCATATTTTTGTGA-GCCAATGCCATTTTT
127 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTG-CATGCCAATGCCATTTTT
*
14809391 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTT
191 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* * * *
14809456 GTTCTT-TATTTTTCACGATTTTTCAAAACTTTTTACGGTTCGAGATTTTTCAAAATTCTTTCGA
256 GTT-TTCTATTTTTCACGATTTTT-AAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGG
* *
14809520 AAGGAGTTTTGGCCCCAAACTTGGTAGACGCGATCCTTGTATTTTTGTTGGCATGCATAAAAAAA
319 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * *
14809585 TCAACTAAAAACGCGAAGTGTACAAGATTTTGTGACCA-TTCAATAAAAGTGTCCCTATTTCAGA
384 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA-AAAAGTGTCCCCATTCCAGA
* * * * *
14809649 CACTTTAATGGCTACTGGTAGTAAACCTGTAAAAGCTCAAATGC-CTTTTAAGGGAGTGTGACTT
448 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTT
*
14809713 CTCGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACAAGCACCCATCGCACATCA
512 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCA
* * * * * * *
14809778 TGCGCGCACACCCCGCCGGTCCCCTCGATCG-CAGGATCCCCAATGCCGCCGGTCAGGTTCTCCA
577 TGCGCGCACACCCCCCCGGCCCCCCCGATCGCCAGAAACCCCAATGCCACCGGTCAGGTTCTCCG
** *** * *
14809842 GCGATGCTCCTG-CGATGGTGCCCC-AACAAAGAAAAATGCAAAACTAGCACATGCCCGAGCCTA
642 GCGATGCTCC-GACGATGGTGCCCCGATGAAA-AAAAATGCGGCACCAGCACATGCCCGAGCCCA
14809905 GCATGTGCTG
705 GCATGTGCTG
*
14809915 CCGCAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
1 -CGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGC
14809966 TTAGACTGGG
Statistics
Matches: 1921, Mismatches: 223, Indels: 70
0.87 0.10 0.03
Matches are distributed among these distances:
703 1 0.00
704 135 0.07
705 69 0.04
706 404 0.21
707 571 0.30
708 62 0.03
709 1 0.00
710 5 0.00
711 2 0.00
712 2 0.00
713 2 0.00
714 65 0.03
715 119 0.06
716 192 0.10
717 91 0.05
718 5 0.00
719 192 0.10
720 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (714 bp):
CGCAACCCTCGGTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATG
AAACGAGGTGGGCGGCGAGCGGGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATCAGCTA
AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAA
TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCATGCGCGCAC
ACCCCCCCGGCCCCCCCGATCGCCAGAAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTC
CGACGATGGTGCCCCGATGAAAAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
Found at i:14809968 original size:26 final size:26
Alignment explanation
Indices: 14809939--14809991 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14809929 CCAGTCCGAT
14809939 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14809965 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14809991 C
1 C
14809992 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14811419 original size:16 final size:16
Alignment explanation
Indices: 14811400--14811432 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
14811390 TCTTTTGTAC
14811400 TTTATGTATT-TTATTA
1 TTTAT-TATTATTATTA
14811416 TTTATTATTATTATTA
1 TTTATTATTATTATTA
14811432 T
1 T
14811433 GTATATCTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.25
16 12 0.75
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (16 bp):
TTTATTATTATTATTA
Found at i:14811478 original size:15 final size:16
Alignment explanation
Indices: 14811458--14811495 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
14811448 TTTCTGTTAA
14811458 TATTTATAT-GTAATT
1 TATTTATATAGTAATT
*
14811473 TATTTATATAGTTATT
1 TATTTATATAGTAATT
14811489 TATTTAT
1 TATTTAT
14811496 TATTATATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 9 0.43
16 12 0.57
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (16 bp):
TATTTATATAGTAATT
Found at i:14811600 original size:26 final size:25
Alignment explanation
Indices: 14811546--14811605 Score: 61
Period size: 24 Copynumber: 2.4 Consensus size: 25
14811536 GATTTATTTT
14811546 ATTTTATTTTTTAATTATCTG-TTA
1 ATTTTATTTTTTAATTATCTGTTTA
*
14811570 ATTTTATTTTATTCATTTATCTGATTT-
1 ATTTTATTTT-TT-AATTATCTG-TTTA
*
14811597 TTTTTATTT
1 ATTTTATTT
14811606 ATCCGATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 5
0.81 0.05 0.14
Matches are distributed among these distances:
24 10 0.33
25 2 0.07
26 8 0.27
27 8 0.27
28 2 0.07
ACGTcount: A:0.22, C:0.05, G:0.03, T:0.70
Consensus pattern (25 bp):
ATTTTATTTTTTAATTATCTGTTTA
Found at i:14811621 original size:18 final size:18
Alignment explanation
Indices: 14811578--14811622 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
14811568 TAATTTTATT
* *
14811578 TTATTCATTTATCTGATTT
1 TTATT-ATTTATCCGATTA
*
14811597 TTTTTATTTATCCGATTA
1 TTATTATTTATCCGATTA
14811615 TTATTATT
1 TTATTATT
14811623 GTTATTATTT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 18 0.82
19 4 0.18
ACGTcount: A:0.22, C:0.09, G:0.04, T:0.64
Consensus pattern (18 bp):
TTATTATTTATCCGATTA
Found at i:14812495 original size:4 final size:4
Alignment explanation
Indices: 14812488--14812591 Score: 52
Period size: 4 Copynumber: 24.5 Consensus size: 4
14812478 TTTTTCAAAA
* * * *
14812488 TTAT TTAT TTAT TTAT TTAT TTAT TAGAT TAGAT TTAT TTA- ATAT TTTT
1 TTAT TTAT TTAT TTAT TTAT TTAT T-TAT T-TAT TTAT TTAT TTAT TTAT
* *
14812537 TTAT CTTAT TT-T TATTT TTATT TTACTT TTCT TTAT TT-T TTATCT TTAT
1 TTAT -TTAT TTAT T-TAT TTA-T TTA--T TTAT TTAT TTAT TTA--T TTAT
14812586 TTAT TT
1 TTAT TT
14812592 TCATTTTTAT
Statistics
Matches: 81, Mismatches: 9, Indels: 20
0.74 0.08 0.18
Matches are distributed among these distances:
3 7 0.09
4 48 0.59
5 18 0.22
6 8 0.10
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (4 bp):
TTAT
Found at i:14812505 original size:12 final size:12
Alignment explanation
Indices: 14812488--14812591 Score: 52
Period size: 13 Copynumber: 8.2 Consensus size: 12
14812478 TTTTTCAAAA
14812488 TTATTTATTTAT
1 TTATTTATTTAT
14812500 TTATTTATTTAT
1 TTATTTATTTAT
* *
14812512 TAGATTAGATTTAT
1 T-TATT-TATTTAT
* *
14812526 TTA-ATATTTTT
1 TTATTTATTTAT
14812537 TTATCTTATTT-T
1 TTAT-TTATTTAT
*
14812549 TATTTTTATTTTACTT
1 T-TATTTA-TTTA--T
*
14812565 TTCTTTATTT-T
1 TTATTTATTTAT
14812576 TTATCTTTATTTAT
1 TTA--TTTATTTAT
14812590 TT
1 TT
14812592 TCATTTTTAT
Statistics
Matches: 70, Mismatches: 10, Indels: 22
0.69 0.10 0.22
Matches are distributed among these distances:
11 11 0.16
12 18 0.26
13 21 0.30
14 13 0.19
15 5 0.07
16 2 0.03
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.72
Consensus pattern (12 bp):
TTATTTATTTAT
Found at i:14812553 original size:6 final size:6
Alignment explanation
Indices: 14812542--14812604 Score: 53
Period size: 6 Copynumber: 11.2 Consensus size: 6
14812532 TTTTTTTATC
* * * *
14812542 TTATTT TTATTT TTA-TT TTACTT TTCTTT AT-TTT TTATCT TTA--T
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT
*
14812586 TTATTT TCATTT TTATTT T
1 TTATTT TTATTT TTATTT T
14812605 ATTCTATTTT
Statistics
Matches: 46, Mismatches: 7, Indels: 8
0.75 0.11 0.13
Matches are distributed among these distances:
4 4 0.09
5 9 0.20
6 33 0.72
ACGTcount: A:0.16, C:0.06, G:0.00, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:14812556 original size:17 final size:16
Alignment explanation
Indices: 14812542--14812614 Score: 65
Period size: 17 Copynumber: 4.4 Consensus size: 16
14812532 TTTTTTTATC
14812542 TTATTTTTATTTTTATT
1 TTATTTTTATTTTT-TT
* *
14812559 TTACTTTTCTTTATTTT
1 TTATTTTTATTT-TTTT
* *
14812576 TTATCTTTATTTATTT
1 TTATTTTTATTTTTTT
* *
14812592 TCATTTTTATTTTATT
1 TTATTTTTATTTTTTT
*
14812608 CTATTTT
1 TTATTTT
14812615 CTTTAAATAA
Statistics
Matches: 43, Mismatches: 12, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
16 20 0.47
17 21 0.49
18 2 0.05
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (16 bp):
TTATTTTTATTTTTTT
Found at i:14812560 original size:22 final size:21
Alignment explanation
Indices: 14812535--14812614 Score: 90
Period size: 22 Copynumber: 3.6 Consensus size: 21
14812525 TTTAATATTT
14812535 TTTTATCTTATTTTTATTTTTA
1 TTTTAT-TTATTTTTATTTTTA
*
14812557 TTTTACTTT-TCTTTATTTTTTA
1 TTTTA-TTTATTTTTA-TTTTTA
*
14812579 TCTTTATTTATTTTCATTTTTA
1 T-TTTATTTATTTTTATTTTTA
14812601 TTTTATTCTATTTT
1 TTTTATT-TATTTT
14812615 CTTTAAATAA
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
21 11 0.22
22 30 0.60
23 9 0.18
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.76
Consensus pattern (21 bp):
TTTTATTTATTTTTATTTTTA
Found at i:14812600 original size:39 final size:39
Alignment explanation
Indices: 14812533--14812614 Score: 105
Period size: 39 Copynumber: 2.1 Consensus size: 39
14812523 TATTTAATAT
* * *
14812533 TTTTTTATCTTATTTTTATTTTTATTTTACTTTTCTT-TA
1 TTTTTTATCTTATATTTATTTTCATTTTA-TTTTATTCTA
14812572 TTTTTTATCTT-TATTTATTTTCATTTTTATTTTATTCTA
1 TTTTTTATCTTATATTTATTTTCA-TTTTATTTTATTCTA
14812611 TTTT
1 TTTT
14812615 CTTTAAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
38 16 0.42
39 22 0.58
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.77
Consensus pattern (39 bp):
TTTTTTATCTTATATTTATTTTCATTTTATTTTATTCTA
Found at i:14812766 original size:119 final size:120
Alignment explanation
Indices: 14812622--14812861 Score: 360
Period size: 119 Copynumber: 2.0 Consensus size: 120
14812612 TTTCTTTAAA
* *
14812622 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGAA
1 TAAAAAT-AAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCTTAAA
* *
14812687 AATCAAAATTTCCAAAAAAA-TATTTTT-AGGAAAAAGTTGAAAGTATCAATTTTCCT
65 AAT-AAAATTTCAAAAAAAAGGATTTTTGAGG-AAAAGTTGAAAGTATCAATTTTCCT
* *
14812743 TAAAAAT-AAATTTTCAAATAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCTTAAAA
1 TAAAAATAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCTTAAAA
* *
14812807 ATAAATTTTCAAAAAAAAGGGTTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
66 ATAAAATTTCAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
14812862 ACACAAAAAC
Statistics
Matches: 109, Mismatches: 8, Indels: 6
0.89 0.07 0.05
Matches are distributed among these distances:
118 14 0.13
119 85 0.78
120 3 0.03
121 7 0.06
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (120 bp):
TAAAAATAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCTTAAAA
ATAAAATTTCAAAAAAAAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:14812774 original size:59 final size:60
Alignment explanation
Indices: 14812622--14812861 Score: 344
Period size: 60 Copynumber: 4.0 Consensus size: 60
14812612 TTTCTTTAAA
14812622 TAAAAATCAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* *
14812683 TGAAAATCAAAATTTCC-AAAAAAATATTTTTAGGAAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAAT-AAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* * *
14812743 TAAAAAT-AAATTTTCAAATAAAATATTTTTAGGGAAAAGTTGAAAATATCAATTTTCCT
1 TAAAAATAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
* **
14812802 TAAAAAT-AAATTTTCAAAAAAAAGGGTTTTT-GAGGAAAAGTTGAAAGTATCAATTTTCCT
1 TAAAAATAAAATTTCCAAAAAAAA-TATTTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCT
14812862 ACACAAAAAC
Statistics
Matches: 165, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
58 7 0.04
59 63 0.38
60 79 0.48
61 16 0.10
ACGTcount: A:0.47, C:0.08, G:0.11, T:0.34
Consensus pattern (60 bp):
TAAAAATAAAATTTCCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCT
Found at i:14813928 original size:116 final size:116
Alignment explanation
Indices: 14813724--14813958 Score: 452
Period size: 116 Copynumber: 2.0 Consensus size: 116
14813714 ACTGCATATA
*
14813724 GTGAACCTTAAGAATGCCTAAACCTAGGATAGAGCCCTTTCTACCTAATGATAGATATACCCTGA
1 GTGAACCTTAAGAATGCCTAAACCTAAGATAGAGCCCTTTCTACCTAATGATAGATATACCCTGA
*
14813789 AATTAAGACACAAAAAGGGTGTTTATCTAACCATTTTGATTGTTTAACTTT
66 AATTAAGACACAAAAAAGGTGTTTATCTAACCATTTTGATTGTTTAACTTT
14813840 GTGAACCTTAAGAATGCCTAAACCTAAGATAGAGCCCTTTCTACCTAATGATAGATATACCCTGA
1 GTGAACCTTAAGAATGCCTAAACCTAAGATAGAGCCCTTTCTACCTAATGATAGATATACCCTGA
14813905 AATTAAGACACAAAAAAGGTGTTTATCTAACCATTTTGATTGTTTAACTTT
66 AATTAAGACACAAAAAAGGTGTTTATCTAACCATTTTGATTGTTTAACTTT
14813956 GTG
1 GTG
14813959 TATCATTTTC
Statistics
Matches: 117, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
116 117 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.32
Consensus pattern (116 bp):
GTGAACCTTAAGAATGCCTAAACCTAAGATAGAGCCCTTTCTACCTAATGATAGATATACCCTGA
AATTAAGACACAAAAAAGGTGTTTATCTAACCATTTTGATTGTTTAACTTT
Found at i:14815775 original size:26 final size:25
Alignment explanation
Indices: 14815734--14815783 Score: 82
Period size: 26 Copynumber: 2.0 Consensus size: 25
14815724 CTGGTCTGAT
*
14815734 CTTAGACTTGAATGAACTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
14815759 CTTAGACATGGAATGAACTCCGTAT
1 CTTAGAC-TGGAATGAACTCCGTAT
14815784 ACCTAAGTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.30, C:0.20, G:0.20, T:0.30
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:14817368 original size:26 final size:26
Alignment explanation
Indices: 14817339--14817391 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14817329 CCGGTCTGAT
*
14817339 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14817365 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14817391 C
1 C
14817392 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14818256 original size:26 final size:26
Alignment explanation
Indices: 14818220--14818272 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14818210 CTGGTCTGAT
*
14818220 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
14818246 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
14818272 C
1 C
14818273 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:14819154 original size:26 final size:26
Alignment explanation
Indices: 14819125--14819177 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14819115 CCGGTCCGAT
*
14819125 CTTAGACTAGGAATAAACTCCGTATG
1 CTTAGACTAGGAATAAACTCCATATG
* *
14819151 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATAAACTCCATATG
14819177 C
1 C
14819178 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTCCATATG
Found at i:14819922 original size:26 final size:26
Alignment explanation
Indices: 14819884--14819936 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14819874 CTGGTTCGAT
*
14819884 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14819910 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14819936 C
1 C
14819937 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14820105 original size:26 final size:26
Alignment explanation
Indices: 14820069--14820121 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14820059 CCGGTTCGAT
*
14820069 CTTAGACTGGGAATGATCTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14820095 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14820121 C
1 C
14820122 GGGCCAAGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14824126 original size:899 final size:897
Alignment explanation
Indices: 14821729--14842583 Score: 11232
Period size: 899 Copynumber: 22.9 Consensus size: 897
14821719 GCCTAGCATG
* * *
14821729 TGCTATCGCAACCCTCGGTCCGGTCTGATCTTAGAC-ACGGAATGAACTCCGTATGCTTAAGCCA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTA-GGAATGAACTCCGTATGCCTAAGCCA
* * * * * *
14821793 ACCGACAAAATGAGCAGGTGGGTGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCC
65 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
14821858 GTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* * * * * *
14821923 TTATGGCTTCTAAATTCGTACAATTGTCGCTTAAGCCTTCACATGAAGTTTCTTGGCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** *
14821988 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTGGCGGTTC-AGGATCTTTTAAAACTTTTTTG
260 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAA-TTTTTT-
* * *
14822052 GAAA-GAGTTTTGGCCCCAAACTTGGTGGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAA
322 GAAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
14822116 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
386 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
14822181 GACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGT
451 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * *
14822246 TCTTGTGGTTTGATGAGGGATAGGGGACAAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
516 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** * ****
14822311 ATGTATGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTTACCGGTCAGGTTCTCCG
581 ATGTGCGCACA-CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
* ** * * * *
14822376 ACGATGCTCCAACGATGGTGCCCCAACGAAGAAAAATACGGCACCAGCACATGCCCGAGGCCAGC
645 GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
* * * * **
14822441 ATGTGCTACCGCAAACCTCGATCTGATCCGATCTTAGATTGGGAATGAACTCTATATGCTTAGAC
710 ATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * * *
14822506 TGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCGCTCTGCCGGCTAG
775 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAA
** * * * ** *
14822571 AGGGGTAGGATGTGCAA-ACCGGGATCGG-CGGGGTCCCCCTCTACGTGCTACCGATCC
840 AGGGGCGGGATGCGCAAGTCGGGGATCGGTC-GGGTCCCCCTCTGTGTGCTACCAATCC
* * * *
14822628 TGCTGCCACAACCCTCAGTCTGGTCTGATCTTAGACCT-GGAATGAACTCCATATGCCTAAGCCA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGA-CTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * **
14822692 ACTGACGAAACGAGCGGGCGGGCAGGCAGGCACTACTCCGGCCAGAGAGATAGGATGCGCAAGCC
65 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * *
14822757 GTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTGTGTGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* * * *
14822822 TTATGGCTTGTAAATCCATACAATGGTCCCCTAAGCCCTGACGTGAAGTTTCATGGCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
14822887 TTGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAAATTTTTTAAAATTTTTTCAG
260 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGA-
* *
14822952 AAGGGGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCAC-AAAAAA
324 AAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
14823016 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAACATTAGAAAAAAGTGTCCCCATTTTAGA
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
14823081 GACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
14823146 TTC-AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCA
518 -TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* *
14823210 TGTGTGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
582 TGTGCGCACA-CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
*
14823275 TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
646 CGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
* ** *
14823340 TGTGCTGTCGCAACCCTCGGTCTGATCCGATCTTAGACTTTGACTGAACTCCGTATGCTTAGACT
711 TGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* *
14823405 GGGAATGAACTCCGTATTCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAAA
776 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAA
* * * *
14823470 GGGGTGGGATGCGGAAGTCAGGGATCGGTCAGGTCCCCCTCTGTGTGCTACCAATCC
841 GGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCC
* * * *
14823527 TGCTGCCACAACCCTCGGTCCT-GTGC-AATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCC
1 TGCTACCGCAACCCTCGGT-CTGGT-CTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
** * * * *
14823590 AACCGACGAAATTAGCGGGCGGACGGGCGGGCACTACGCTGGCCAGAGAGACGAGG-TGTGTAAG
64 AACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACG-GGATGCGCAAG
* * * * * *
14823654 CCGTGGATCGATAGGGTGGTAGGTGCGTTAAGGCAAATCTTCATATTTCTACGTGCTAATACCAT
128 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCAT
14823719 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
193 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
*
14823784 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATCTTTTT
258 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAAT-TTTTT
* * * * *
14823849 GAAAGCAGTTTTGGCCCAAAACATGGTAGACGTCATCCCTGTATTTTTGTTGGTATGCACAAAAA
322 GAAAGGAGTTTTGGCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
14823914 AATTCAGCAAAAAAATCGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCACATTTCA
386 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
14823979 GACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGCGGGTGTGAGT
451 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * **
14824044 TCTCGAGGTTTGATGAGGGGTAAGGGGCCAATATAAGGGTGAAGTACCAGCACCCATCGCACATC
516 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * *
14824109 ATGTGCGCACACCCCCCGGGCCCCCCGATCACCCGG-ACCCCAATGGCCGCCTGTTAGGTTCTCC
581 ATGTGCGCACACCCCCCGGCCCCCCCGATCA-TCGGAACCCCAAT-GCCGTCGGTCAGGTTCTCC
** *
14824173 GGCGATGCTTACCGCGCGAATGGTGCCGCCGGTGAAGAAACATGCGACACCAGC-CATGCCCGAG
644 GGCGATGC-T-CCG-GCG-ATGGTGCC-CCGACGAAGAAAAATGCGACACCAGCACATGCCCGAG
* * ** * ** *
14824237 CCCAAGCATCTACCTATCACAACCCTCGGTCCCATCCGATCTCAGACCTGGGAAGTGAACTCCGT
704 CCC-AGCATGT-GCTGCCGCAACCCTCGGTCTGATCCGATCTTAGA-CTGGGAA-TGAACTCCGT
* * *
14824302 ATGCTTATGACTGGGAATG-ACTCC-TATGCCT-AGTCAACCGACGAAACAAGCGTGCGGGCGAT
765 ATGCTTA-GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
** * * ** ** *
14824364 CAGTTGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCAAGTCCCCCTCTACGTGCTGGCC
829 CAGCCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCT-ACC
14824429 -ATCC
893 AATCC
* * ** *
14824433 TGCTATCGCAACCCTCGATCTGGTCCAATCTTCGACTAGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
** * *
14824498 CCGACGAAACGAGTAGGCGGGCAGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
*
14824563 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * *
14824628 GATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACCATT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
14824693 CTTTTTCTATTTTTCACGATTTTTGAAACTTTTT-CTGGTTCGAGATTTTTTAAAATTTTTTTGG
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTAC-GGTTCGAGATTTTTTAAAA-TTTTTTGA
**
14824757 AAGGAGTTTTTTCCCAAAACTTGGTAGACGTGATCCTTGTATTTTT-TTGGCATGCACAAAAAAA
324 AAGGAGTTTTGGCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
14824821 TTCTGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
14824886 CATTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
14824951 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGACCAAGTACCAGCACCCATCGCACATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
** * *
14825016 GTGCGCACACCCCCCCGGCCCATCCGATCGCTCGG-ACCCCAATGCCG-CTGATCAGGTTCT-C-
583 GTGCGCACA-CCCCCCGGCCCCCCCGATC-ATCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCG
* ** *
14825077 -C-A-------GCGATGGTGCCCTGGTGAAGAAAAATGC-AGCACCAGCACATGCCCAAGCCCAG
645 GCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAG
* * * *
14825132 CATGTGCTGCTGCAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
709 CATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * ** ** *
14825197 CTGGGAATGAACTCTGTATGCCTAAGCCAACTAACGAAACGAGCGTATGGGCGCTCAGCCGACCA
774 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA
* * *
14825262 GAGGGGCGGGATGCACAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTGCCAATCC
839 AAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCC
* * * *
14825321 TGCTACTGTAACCCTCGGTCTGGTCTGATCTTAGACTACGAATGAACTCCGTATGCCTAACCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * ** *
14825386 CCGATGAAACGAGCGGGCGGACGGGCGGGCACTACGTTGGCCAGAGAGACGGGATGCGTAAGCCG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * ***
14825451 TGGATCGATAGGGTGGTAGGTGGGTCTAGGCACATATTCATATTTCTGCACACCAATGCCA-TTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * *
14825515 TATGGCTTTTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCATGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
14825580 CGTTTTCTATTTTTCACGATTTTTTATACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTTGGA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTGAA
** *
14825645 AGGAGTTTTGGTTCAAACTTGGTAGACG-GATCCTTGTATTTTTGTTGGCATGCACAAAAAATTT
325 AGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
14825709 CAGCTTAAAACTCGAACTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
390 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
14825774 CTTTAATGGCTCCTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTT
455 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* *
14825839 GAGGTTTGATGAGGGATAGGGAGCCAATATAAGGGCCGAGTACCAGCACCCATCGCACATCATGT
520 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
14825904 GCGCACA-CCCCCAGCCCCCCCGATCATCAGAACCTCAATGCCGTCGGTTAGGTTATCCGGCGAT
585 GCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGAT
* * *
14825968 GCTCCGACGATGGTGCCCCGAC-AGAGAAAAATGTTG-CACCAGCACATTCCCGAGCCCAGCATG
650 GCTCCGGCGATGGTGCCCCGACGA-AGAAAAATG-CGACACCAGCACATGCCCGAGCCCAGCATG
* * * * *
14826031 TGCTGCCACAACCCTCGCTCTTG-TTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTA
713 TGCTGCCGCAACCCTCGGTC-TGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* *
14826095 GGAATGAACTCCGTATGCTTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAA
777 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA-AA
* * * * * * ** ** * *
14826160 -AGGCGGGATGCGTAAGCCAGGGATCGATCGAGTCCCCCTCTACGTGCTGTCGATCT
841 GGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCC
* * * * * *
14826216 TGCTGCTGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAACCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14826281 CCGACGAAACGA----GCGGGC-GGTGAGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* ** * * *
14826341 TGGATCGATAGGATGACAGGTAGGTTTAGGCACATATTCATATTTTTGCGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * *
14826406 TTTGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCATGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * * *
14826471 TGTTTTCTATTTTCCACTG-TTTATGAAACTTTTTGCGGTTAGAGATTTTTTAAAATTTTTTCAG
261 CGTTTTCTATTTTTCAC-GATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGA-
* ** *
14826535 AAGGTGTTTTGGTTCAAACTTGGTAGACGGGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
324 AAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* *
14826600 TCAGCTAAAAACTCGAACTGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * * *
14826665 ACTTTAATGGCTACTGGCAGCAAACCTATAAAATATCAAATGCTCTTTAGGGGGGTGTCAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
*
14826730 TGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * *
14826795 TGCGCACACCCCCTCAGCCACCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTATCCAGCA
584 TGCGCACACCCCC-CGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * * * * **
14826860 ATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATACGGCACTAGCACATTCCCGAGCCTGGCATG
648 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
* * * *
14826925 TGCTGCCGCAACCCTCGTTC-CAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTG
713 TGCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
14826989 GGAATGAACTCTGTATGCTTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAGAA
777 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCA-AA
** * * * *
14827054 -GGGCGGGATGCATAAGCCGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCG
841 GGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCC
* * * * *
14827110 TACTGCTGCAAGCCTCGGTCCGGTCTGATCTTAGACT-GAGAATGAACTCCGTATGCCTAAGCCA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAG-GAATGAACTCCGTATGCCTAAGCCA
* * *
14827174 ACCGACGAAACGAGCGGGCAGGCGGGCGGGCGGGCATTACGTCGGCCAGAGAGACAGGATGCGCA
65 ACCGACGAAACGAGC--G--GGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* *
14827239 AGCCGTGGATCGATAGGATGGTAGGTGGGTTTAGGCACATATTCATATTTCTGCGTGCCAATGCC
126 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
* * *
14827304 ATTTTTATGGCTTTTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCATGA
191 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
14827369 CGACTCGTTTTCTATTTTTCAAGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
256 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * ** *
14827434 TCAGAAGCAGTTTTGGTTCAAACTTGGTAGACGGGATCCTTGTATTTTTGTTGGCATGCACAAAA
321 TGA-AAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAA
* * *
14827499 AAAATTCAGCTAAAAACTCAAACTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
384 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
14827564 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCCTTT-AGGGGGTGTG
449 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT-CTTTAAGGGGGTGTG
*
14827628 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAATATAAGGGTCAAGTACCAGCACCCATCCGC
513 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCC-AATATAAGGGCCAAGTACCAGCACCCAT-CGC
** * * *
14827693 ACGATCATGTGCGCACACAGCCC-G-CCCCCC-ATCATTGGAACCCCAATACCGTCGGTCCGGTT
576 AC-ATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTT
* * * ** * *
14827755 CTCCAGCGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATACGACACCAGCACATTCCCGA-C
640 CTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGC
** * * * * * ** * *
14827819 CTGGCATGTACTGCTGCAACCTTC-GTTTTAGTCTAATTCTTAGACTGCGAATGAACTCTGTATG
705 CCAGCATGTGCTGCCGCAACCCTCGGTCTGA-TCCGA-TCTTAGACTGGGAATGAACTCCGTATG
* * * * * * *
14827883 CTTAGACTAGGAATGAAATCCGTATGCCTAAGTCAACCCACAAAACAAGCATGCGGGTGCTCAGT
768 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *
14827948 CGACCAAAGGGGCAGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCAGTGTGCTACCAATCC
833 CGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCC
* * *
14828013 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14828078 CCGACGAAACGA----GCGGGCGGACGGGCACTACACAGGCCAGAAAGACGGGATGTGCAAGCCG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
14828139 TGGATCAATAGGGTGGTAGGTGGGTTTAAGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
** * * * * *
14828204 TATTTCATGTAAATTCAAACAATGGTCCCTTAAGCCTTCATGTGAAGTTTAATGGAAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* ** * * * * *
14828269 CATTTTCTATTTTTCACGATTTTCAAAAATTTTTGCGGTTCGGGATTTTTTATAATTTTTTTGGA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTA-AAATTTTTTGAA
* * *
14828334 AGTAGTTTTGGCCCCAAACTTAGTAGACAG-GATCGTTGTATTTTTGTTGGCATGCACAAAAAAA
325 AGGAGTTTTGG-CCCAAACTTGGTAGAC-GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * *
14828398 TTCAGCTAAAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATATCAGA
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
14828463 AACTTTAATGGCTATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
14828528 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCACATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * ** *
14828593 GTGCACACACCCCCCGGCCCCCCCGATCACCGGAACGCCAATGCCACCGATCAGGTTCTCCGGCG
583 GTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * * * * * * *
14828658 ATGCTCCGACGATAGTACGCAGACGAAGAAAAATGTGGCACCAGCACAAGCCCGAGCCCAGCATG
648 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
* * * * * * * * *
14828723 TGTTGCTGCAAACCTAGGTCCGGTCTGTTCTTATG-TTGGGAATGAACTCCGTATGCTTAGACTG
713 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTA-GACTGGGAATGAACTCCGTATGCTTAGACTG
* * * *
14828787 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCACTCAACCGGCCAGAG
777 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAG
*** * * * * *
14828852 GGGTAAGATGCGCAA-TCCGTGGTTCGGTCGAGTCCCCCTCTGTGTGCTCCCAATCT
842 GGGCGGGATGCGCAAGT-CGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCC
* *
14828908 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTGAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14828973 TCGACGAAACAAGCGGGCGGGCGGGCGGGCACTACGCCGGCCTGAGAGACGGGATGCGCAAGCCG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * ** *
14829038 TGGATCGATAGGGTGATAGGTGGGATTAGGGATATCTTCATATTTCTATGTGCCAATACCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
14829103 TATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATAGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
14829168 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTATCGGA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTT-TTGAA
* * *
14829233 AGTAGTTTTGGTCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAAAAAT
325 AGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
14829298 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCTTTTGAAAAAAGTGTCCCCATTTCAGAA
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
14829363 ACTTTTATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * *
14829428 CAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATCACACATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * *
14829493 TGCGCACAGCCCCCCCGACCGCCTCGAGCACCGGAACCCCAATGCCGTCGCTCAGGTTCTCTGGC
584 TGCGCACA--CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
* ** *
14829558 GATGTTCCGGCGATCCTCCCTTAATGGTGCCTTGACGAAGAAAAATGCGGCACCAGCACATGCCC
647 GATGCTCCGGCG-----------ATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCC
* *
14829623 GAGCCCAGTATGTGCTGCCGTAA-CC-C--TC-G----G-TC-----C---G---G---TCCG-A
701 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
14829663 T-CTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTCA
766 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
14829727 GCCGGCCAGAGGGGCAGGATGCACATGTCGGAGATCGGTCGAGTCCCCCTCTGGGTGCTGCCGAT
831 GCCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAAT
14829792 CC
896 CC
** * * * * * *
14829794 TGCTGTCGTAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTACACTGG
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTA-A----
** * * * * ** * ** * *
14829859 GAATGAACTCTGTATGCTTAAGTCAACCCATGAAACGAGCGTACGGGCGCT-CAGCCGGCCAAAG
61 G--CCAAC-C-G-A--C-GAA-ACGA-GC--G-GGCGGGCGGGCGGGCACTAC-GCCGGCCAGAG
* * * * * * ** **
14829923 GGGCAGGATGCGCAAGCCGGGGATC-ATCCGGGTCCCCCTTTGCGTGCTACCGATACTGTTTCCG
112 AGACGGGATGCGCAAGCCGTGGATCGAT-AGGG--------T--G-G-TA--GGT-GGGTTTAGG
* * * * * * ** * * * * * ** * *
14829987 CA-ACCCTCAGTCTGATCTCAGACTTG-GAATGAAATCTATATGCCTAAGTCAACCCATAAAACG
161 CACATCTTCA---T-ATTTCTG-CGTGCCAATGCCATTTTTATGGCT-TGTAAATTCATACAATG
** *** *
14830050 AGCATCCGGGT--G-C-TCAAC-TAGCCAAAGGGGCGGGATGCGCAAGTCGAGGATCGGTCAGGT
220 -G--TCC-CTTAAGCCTTC-ACGT-G---AAGTTTC---ATG-GCAA---GACGA-C--TC--GT
* ** * ** ** **** ** * * * *
14830110 CCCTCTCTACGTGCTGC-CGA-TCCTGCTAC-CGCAAC-CCTCG-G-TCTGGTTT--GA-TCTTA
264 ---TTTCTA--TTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGAT-T-TTTTAAAATTTTTT
* * * * * ** * ** ***** ** * **
14830166 GACTAGGA---ATGAACTCCATA--TGCCTA-A-GCCAACCGACG-AAACGAGCGGGCGGACGGG
322 GA-AAGGAGTTTTG-GC-CCAAACTTG-GTAGACGTGATCC-TTGTATTTTTGTTGGC--ATGCA
** * * * * * * ** * * * *** * ** *****
14830223 C-ACTACA-CCGGCCAGAGAGACG-GGCTATGCAAG-CCAT-TGATCAATAGGGTGGTAG-GT--
380 CAAAAAAATTCAGCTAAAAACTCGAAG-TGTACAAGATTTTGTGA-CCATTTGAAAAAAGTGTCC
*** * * * *** * **
14830280 GGGTTTAAG-CACGTCTTCATGTTTCTA-TGTGCCAATGCCATTTTTATTTTTTGTAAATTCAAA
443 CCATTTCAGACAC-T-TTAATG--GCTACTG-G-C-A-G-CA-----A--ACCTGTAAAATCTCA
* * *** * ** ****
14830343 CAATGGTCCCTTAA-GCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTG-TTTTTCAC
492 -AATGCT-CTTTAAGGGGGT---GTG-AG-TTC-T--C--GA-G----GTTTGATGAGGGAT-A-
**** * * * * * * *** ** **** * ** *
14830406 GATTTTCAAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCG-AAAGGAGTTTTG-GC-C-
538 G-GGGGC--CAA--TATAAGG-GCCA-A-GTACCAGCA-CCCATCGCACATCA--TGTGCGCACA
* ** **** ** * * ******* * * ** **** * * * ***
14830467 CCAAACTTGGTAGACGGGATCATTGTATTTTTGTTGGCAT-GCACAAAAACATTCAGCTAAAAAA
592 CC--CCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTC-TCCGGC--GATGC
* * * *** * * * * * *
14830531 TCAAAGTGTACAAGATTTTGTG-ACC-A-TTTGAAAAAAGTGTC-CC--CATAT--CAGA-CACT
652 TC--CG-G--C--GA--TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGC-CC
*** * * * *** * ** * * * * *
14830587 TTAATGGCTACTAGCAGCAAACCT--GTAAAATCTCAAATGCTCTTTA--AGGAGGTGTCAGTTC
707 AGCAT-G-TGCT-GCCGCAACCCTCGGTCTGATC-C-GAT-CT-TAGACTGGGA-ATG-AACTCC
* * * * **** * *
14830648 -TCAAGGTTTGA-TGAGGGATAGGGGGCCAATATAAGGGCCT-AGTACCAGCACCTATCGCACAT
763 GT-ATGCTTAGACTG-GGAAT-GAACTCC-GTAT----GCCTAAGT--CA--ACCCA-CG-A-A-
* * ** *** * * * ** * ** ** *
14830710 CATGTGCGCACAACCCCCCGGCCCCCCCGATCACCGGAACGCCAATGCCACCGGTCAGGTTCTCC
812 -ACGAGCGTGCGGGCGCTCAG-CCGGCC-A--A-AGGGGCG-GGATG----C-G-CAAG---T-C
* * * * ** * *
14830775 GGCGATGCTCCGACGACGGTGCCCCGATGAAGAAAAATGCGATACCAGCA-CA
860 GG-G--GATCGGTCG--GGTCCCCCTCTG-TG-----TGC--TACCA--ATCC
* * * * * ** * ** *
14830827 TGC--CCG-AGCCCAGCATGTGCTGCCG-C-AACCCTCGGTCT-GGTCTG-A-T-CTTATG-CTG
1 TGCTACCGCAACCC-TC-GGT-CTG--GTCTGA-TCTTAGACTAGGAATGAACTCCGTATGCCT-
*** * * ** * * ** ** * * *** *
14830882 AGAATGAACTCCA-TATGCTTAGACTGGGAATGAAC-TCCGTATGC-CTAAGTCAACCCACGAAA
59 A-AGCCAAC-CGACGAAAC-GAG-C-GGG--CGGGCGGGCG--GGCACTACG-CCGGCCA-GAGA
* *** * * ** * * ** * * ***
14830944 CAAGCGTGCGAGCGCTCAGCCGGCTAGAGGGGTAGGATGCACAAGCCGT-GG-ATCGGC-CGGGT
113 -GA-CG-GGATGCGC-AAGCC-G-TGGATCGATAGGGTG--GTAG--GTGGGTTTAGGCACATCT
* *** * * ****** * ** * *
14831006 CCCCCTTTCTGTGCTGCCGATCCTGCTACCACAACCCTCGGTCTGGTCTGATCTTAGACTTGGAA
168 TCATATTTCTGCG-TGCC-A--ATG---CCATTTTTAT-GG-CTTGT-AAAT-TCATAC----AA
** * * * * ** * * * * ****
14831071 TGAACTCCGTATGCCTGAGCCAACCGACGAAACG-AGCGGACGGGCGAGCAGGCACTATGCCGAC
218 TGGTC-CCTTAAGCCT---TC-A-CG-TG-AA-GTTTC--A-TGGCAAG-ACG-ACT-CGTTTTC
* ***** *** ** * * * * *
14831135 CA-GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA-GGTGCGATTAGGGATATCTTC
268 TATTTTTCACGATTTTTG-AA-AC-T---T---T----T--TACGGTTCG---A--GATTTTTTA
** * * * ** ** * * *
14831198 GTATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTT
313 AAATTT-T-T-TG--AAAG-GA-GTTT-TGGC--CCAAA--C-T----TGGTAGACGTGATCCTT
** ** * ** *** * ** ** *
14831262 CACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACG-
361 ---GT-ATTTTTGTTGGCATG-C-A--CA----AAAAAATTCA-G---CTAAAAAC--TCGAAGT
* * * ** *** ***** ** ** *
14831326 GTTCGAGATTTT-TTAAAATTTTCTCAAAAGTAGTTTTGGTCCCA-A-AC-TTGGTAG--ACGTG
408 GTACAAGATTTTGTGACCA-TTTGAAAAAAGT-GTCCCCATTTCAGACACTTTAATGGCTAC-TG
*** * * *** * **
14831385 G-A-CAAA-----AAAAT-TCAGCTAA-AAACTTGAA--GTGTACAAGATTTTGCGACCTTT--T
470 GCAGCAAACCTGTAAAATCTCA---AATGCTCTTTAAGGGGGTGTGAG-TTCT-CGAGGTTTGAT
** * *** * * ** * ** * * * ** * ** *
14831437 GA-AAAAAGTGTCCCCACT-TCAGAACTTTAATGGCTACTGGCAGCAAAC-C-TGTAAAAT-CTC
530 GAGGGATAG-GGGGCCAATATAAGGGC--CAA--G-TACCAGCACCCATCGCACATCATGTGCGC
* * * ** ******* ****** * *
14831497 AAATGCTCTTGAAGGGGGTGTGAGTTC-TCGG-GGTTTGATG-AG--GGAT-AGG-----GGGCC
589 ACA-CCCCCCG--GCCCCCCCGA--TCATCGGAACCCCAATGCCGTCGG-TCAGGTTCTCCGG-C
* * ** * * * * ** *
14831551 AAT-ATAAGGGCCA-AGTACCAGCACCC-ATC-ACACATCATGTGCG-CA-CA-C-CCT-CCCTG
647 GATGCT-CCGGCGATGGT----GC-CCCGA-CGA-AGA-AAAATGCGACACCAGCACATGCCC-G
* ** * * ** * * * **
14831607 ACCCCTCCGATCG-GCGGAACCCCAATGC-C-GTC-GATCAGGT-TCT---CCGGTG-ATGGTC-
702 AGCCCAGC-AT-GTGCTG--CCGCAACCCTCGGTCTGATCCGATCT-TAGACTGG-GAATGAACT
* * * * * * * ** ** *
14831662 CGGCGATGGTGCCTCG-CTGAAGAA--AAATGCG---GCACT--GGCACATGCACGAGCCTAGCA
761 C--CG-T-ATGCTTAGACTG-GGAATGAACTCCGTATGC-CTAAGTCA-ACCCACGAAACGAGC-
* * * **** * *
14831719 TGTGCTGCTGCAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTGACTG
818 -GTGC-G--G--GCGCTC-AGCCGG-CC-A-AAGGGGC-GGG-ATG--C-GCA-A-G--T--C-G
* * ** *** ** *** * *
14831784 GGAAT-GAACTC-TATATGCCTAAGTAAACTCACAAAACGAGC
861 GGGATCG--GTCGGGTCCCCCTCTGTGTGCT-ACCAATC---C
* * * * ** * * ** ** * **
14831825 TTGCGAGCGCTCAGCCGGC-CAG-AGGGGCGGGATGCGCA-AGCCGGGGATCGGCCGGGTCCCCA
1 -TGCTA-C-CGCAACC--CTCGGTCTGGTC-TGAT-CTTAGA-CTAGGAAT-GAAC---T--CC-
* * *** * * * * ** *
14831887 TCTATGTGCT--GCTGCAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGC-
51 -GTATG-CCTAAGC--CAA--C-CGA-C-GAAACGAGC--GGGC-GGG--CG---GGCG--GGCA
* *** * * * * **
14831949 CTAAGTCAACCCACGAAACAAGCGTGCGAGTGCTC-AG-C-TGG-CCAGAGGGGCGGGATGCGTA
97 CTACG-CCGGCCA-GAGA-GA-CG-G-GA-TGCGCAAGCCGTGGATC-GA---TAGGG-TG-GT-
** * * * * * ******
14832010 AGCCG-GGGATCGATCGGGTCCCA-C-TC-TAGCTGCTGTCGGGCCTACTGCCATAGCCCCGGTC
148 AG--GTGGG-T---TTAGG-CACATCTTCATA-TTTCTG-CGTGCC-AATGCCATTTTTATGG-C
* ** * * * ** *
14832071 TGGTCTGATCTTAGACTGGGAATGAACTCAGTATGCC-TAAGCCAACAGACGAAACGAGCGGGCG
202 TTGT-AAAT-TCATAC----AATG------G--TCCCTTAAGCCTTC--ACG---TGA-------
* * * * ** *** * ** ** ** * * ** *
14832135 GGCACTACGTCGGCCAGAGA-GACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTT
241 AG--TTTCAT-GG-CA-AGACGACTCG-TTTTCTA-TTTTTCA-CGAT--TTTTGAAACT--TTT
* * * * * * * **
14832199 TA-GG--C-ACA-TCTTCATATTTTTGCTTGCCAAGGCCATTTTTATGGCTTGTAAATTCATACA
294 TACGGTTCGAGATTTTTTAAAATTTT--TTG-AAAGG--A-GTTT-TGGC--CCAAA--C-T---
* * * * ** ** * *** ***
14832259 ATGGTCG-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCATGAT
344 -TGGTAGACGTGATCCTT---GT-ATTTTTGTTGGCATG-C-A--C----AAAAAAATTCA-G--
* ** ** * * ** * ** ** **
14832323 TTTTGAAACTTTTTACG-GTTCGGGATTTT-TTAAAATTTTTTCGGTAGGAGTTTTGTCCCCAAA
393 -CTAAAAAC--TCGAAGTGTACAAGATTTTGTGACCA---TTT-GAAAAAAG---TGTCCCC--A
*** ** * * **
14832386 CTTGGT-AGACGTGATCCTTGT-ATTTTTGTTGGCATGCATAA----AAAAATCAGCTAAAAACT
446 -TT--TCAGAC---A--CTT-TAATGGCTACTGGCA-GCA-AACCTGTAAAATC-TC-AAATGCT
* ** * ** ** * * *
14832445 C--GAA----GTGT-A---CAGGA-TTTTG-TGA-CCAT---TTG--AA-AAAAGTGTCCCCATG
498 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG-G--GCCAAG
* * ** * * ***** * * * *
14832491 T-CAAACACTTTAAT-GC-C-T-ACTG-GCAGCA-A--ACCTGTAAAATCTC-A-AAT-GG-TCT
560 TACCAGCAC--CCATCGCACATCA-TGTGC-GCACACCCCCCG-GCCCCCCCGATCATCGGAACC
** * ** * * * * ** * * * *
14832543 TTAAGGGGGT--GTGA-GTTCT-TGAG-GTTTGATGAGG-GATAGG-G----GGCCAA-TATAA-
620 CCAATGCCGTCGGTCAGGTTCTCCG-GCG-ATGCTCCGGCGAT-GGTGCCCCGACGAAGAAAAAT
* * * ** * * * * * ***
14832595 G-GGC-CAAGTACCGGCACCCATCGCACATCATGTG--G--GCACACCCACGGCCCCCT-CGATC
682 GCGACACCAGCACATGC-CCGA--GCCCAGCATGTGCTGCCGCA-ACCCTCGGTCTGATCCGATC
* * ** * * * * *
14832653 GTCGAAAC-GCTAATG-TCGCCGGTCAGGTTCTTCGAC---G-ATG--CTTCGGCG-ATG-GT--
743 -T-TAGACTGGGAATGAACTCC-GT-A--TGCTTAGACTGGGAATGAAC-TC--CGTATGCCTAA
** ** * * *
14832706 G-C--CCCGACGAAGAAAAATGCG-GC-ACCAGCACATGCCCGAGCCCAACATGTGC----TGCT
799 GTCAACCC-ACG-A-AACGA-GCGTGCGGGC-GCTCA-G-CCG-G-CCAA-AGGGGCGGGATGC-
* ** ** * * ***** * *
14832762 ACAACCCTCGG-TCCGGTCCGATCTTAGACTGGGAATGAACT-CCGTATGCC
853 GCAAGTCGGGGAT-CGGTCGGGTCCCCCTCTGTG--TG--CTACC-AAT-CC
** * ** ** * * * * ** ** * **
14832812 TAATTTAACCCACAAAACGAGCGTGTGGGCTTTCAGCCGGCCAGAGGGATGGGATGCACAAGCCA
1 T--GCT-A-CCGCAACCCTCG-GTCT-GG-TCTGA-TC--TTAGA-CTA-GGAATG-A-ACTCC-
** ** ** * * *** *** * * ** *
14832877 GTGATCTGCC-GGGTCCCCCTCTG-CG-TGCTACCAATCTTACTGCCGCAACCCT-CAGTCCGGT
51 GT-A--TGCCTAAG-CCAAC-C-GACGAAACGAGCGGGCGGGCGGGCG-GGCACTAC-G-CCGG-
* * *** *
14832938 CCAATATTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGA-CGAAACAAGCGGTGG-ACG
106 CC-AGA-GAGAC-GGG-ATG-----C----G-C-AAGCC-GTGGATCG--A-TAG-GGTGGTA--
* *** ** *** ** **** *
14833001 GGCGGGTGGCGGGC-GGTGGGCACTA---C-GCCG-GCCAGA-GAGA-CGGGATGCGCAAGCTGT
149 GGTGGGT-TTAGGCACATCTTCA-TATTTCTG-CGTGCCA-ATGCCATTTTTATG-GC---TTGT
** *** *** * * * * * * * *
14833058 GGA-TCGATAGGGTGGTAGGTGGGTTTAGGC-ACATCTTCATA-TTTC-T-GCATG-CCAATGCC
206 AAATTC-ATA---CAAT-GGTCCCTTAAGCCTTCA-CGTGA-AGTTTCATGGCAAGACGACT--C
* * ** * * * * *
14833117 ATTTT-TATGGCTTTT-A-AATTCAT-AAAATGGTCCCTTAAGCCTTCACATGAAGTTTAATGGC
262 GTTTTCTAT---TTTTCACGATTTTTGAAACT--T--TTTACG-GTTC-GA-G-A-TTT--T---
** *** ** * ** * *
14833178 AAAACAACTCGTTTTCTCTTTTTCACTA-TTTTTG---AAACTT--TTTACG-G-TTC-GGTA-T
310 TTAA-AA------TT-T-TTTGAAAGGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATT
*** *** * ** * *** * * * ***
14833233 TTT-TTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACATGATCCTTCTATTTTT
366 TTTGTTGGCA--TGCAC-AAA-AAAATTCAGCTAAAAAC-TCG-A-A-GTG-TAC-AAGA-TTTT
* *** **
14833297 GTTGCCATGCACAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGAC-CATTTGAAA
420 G-TG--A--C-C-----ATT----T-GAAA---AAAGTGT-CCCCA-TTTCAGACAC-TTT----
* ** ** * * * *
14833361 AAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
459 -AA-TGGCTAC-TGGCAG-CA----AA---C--CT-GTA--AAA--TCTCAAAT-GC---T-CT-
* * ** * * * * * ** *
14833426 TTTAAGGGG-GTTTGAGT-TCTCAAGGTTTAATAAGGGATAGGGGGCCAATATAAGGGCCAAGTA
500 TTAAGGGGGTGTGAG-TTCTC-GAGGTTTGATGAGGG-ATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
14833489 CCGGCACCCATCGCACAACATGTGTG--CACCCCCCGG-CCCCCCGATCTTCGGAACCCCAATAC
562 CCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGC
* * * * *
14833551 CGCCGGTCAGGTTCTCCAGCGATGCTCCGACGATGGTGCCCCGACAAAGAAAAATAC-AGCACCA
627 CGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGA-CACCA
* * ** *
14833615 GCACATGCCCGAGCCCAGCATCTGCTGTCGCAATGCTCGGT-TCGATCCAATCTTAGACTGGGAA
691 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCT-GATCCGATCTTAGACTGGGAA
* * * *
14833679 TGAACTCCATATGCTTAGACTGGGAATGAACTCCGTGTGCCTAAGTCAACCAACAAAACGAGCGT
755 TGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGT
* * * * ** *
14833744 GCGGGCGCTCAGCCGACCAGAGGGACGGGATGCGCAAGCCAAGGATCGGTCGGGTCCCCCTCTGC
820 GCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGT
** *
14833809 GTGCTGTCGATCC
885 GTGCTACCAATCC
* * * * *
14833822 TGCTACCACAACCCTTGGTCTGATTTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
** * * * *
14833887 CCGACGAAACGAGCGGATGGGCGGGTGGGCACTACGCCGGCTAGAGAGATGGGATGCGCAAGCCA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
14833952 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
*
14834017 TATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
14834082 CCTTTTTTATTTTTCACGATTTTGGAAACCTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-GAA
* * * *
14834147 AGGAGTTTTAGCTCCAAACTTGGTAGACATGATCCTTCTATTTTTTTTGGCATGCACAAAAAAAT
325 AGGAGTTTTGGC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
14834212 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT---CATTTCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
14834274 A-TTTAA--G-TACT-GCAGCAAA-CTGTAAAATCT-AAAT-CGTC-TTCAGTCGAGGT-TGCGT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC-TCTTTAAG--GGGGTGTGAGT
* * * * *
14834329 TC-C-ACAG-TT-CT--GGGCTAGAGGGCCAGTATAAGGGCCAAGTACCA-CACCCATCGC-CAT
516 TCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * ** * * *
14834386 ACA--TGCGC-CACCCCCCGACCCCCGCGATCGT-GG--TTCTAA-G--ATC-GTCAGGTTCT-T
580 -CATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
* * * * *
14834440 GGCAATGATCCGGTGATGGTG--CTGGCGAAGAAAATATG-G-CACCAGCACAT-CAACCTGAGC
644 GGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAA-ATGCGACACCAGCACATGC--CC-GAGC
* * * * *
14834500 CCAGCAAGTGCATGCCGC-ACCCTCGGTCCGGT-CGACCTTAGACTGGGAATGAACT-C-TTTG-
705 CCAGCATGTGC-TGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * ** *
14834560 -TATGACT---AA-G---T-C--A-ACCTACAG--AACTCGTG-AA-G-GCGT-----TG-TCAG
769 TTA-GACTGGGAATGAACTCCGTATGCCTA-AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
* * * * * * * * **
14834602 -C-ACC-AGGGGGC-AGATGCG-TAG-C-CGGATCGGTCGGGTCCCCCTTTACT-TGCTGCTGAT
832 CCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCT-GTGTGCTACCAAT
14834659 CC
896 CC
* * * * * * * *
14834661 TGCTGCTGTAACCCTTGGTCCGATCTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
14834726 CCAACGAAACGA----G-GGGCGGGCGGGCACTACGCTGGCTAGAGAGATGGGATGCGCAAGCCG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
** ** * *
14834786 TGGATAAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTACCAACGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * *
14834851 TAAGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
14834916 CATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTG-GAATTTTTTAAAATTTTTTTGG
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAAA-TTTTTTGA
* * * *
14834980 AAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAAAAAA
324 AAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * * *
14835045 TTCAGCTGAAAATTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTACAGA
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
**
14835110 CACTTTAATGGCTACTACCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
14835175 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
*
14835240 GTGCGCACACCCTCCCTGGCCCCCCTGATCGA-CGGAACCCCAATGCCGTCGGTCAGGTTCTTCG
583 GTGCGCACACCC-CCC-GGCCCCCCCGATC-ATCGGAACCCCAATGCCGTCGGTCAGGTTC-TC-
* * * ** * ** *
14835304 GTGATGGTTCGGTGATGGTTCGGCGATGGTGCCCCGGTGAAGAAAAATGCGGCACTGGCGCATGC
643 ---------CGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGC
* * * * * * *
14835369 CCGAGCCTACCATGTGCTGCCACAACCCTCGATCCGGTCCGATCTTAGACTGGGAATGAACTCCA
699 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCG
* * * *
14835434 TATGCTT-GACTGGGAATGAACTCTGTATGCCTAAGTAAACCCACAAAACGAGTGTGCGGGCGCT
764 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * ** *
14835498 CAGCCGGCAAAAGGGGCGGGATGCACAAGTCGGGGATCGGCCGGGTCCCCATCTACGTGCTACCG
829 CAGCCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCA
14835563 ATCC
894 ATCC
* * * * * * *
14835567 TACTACTGCAGCCCTCGGTCTGGTCCGATCTTAGACTGGGAATTAACTCTGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
14835632 CTGACAAAATGATTGGACGGGCGGGCGAGTGGGCACTACGTCGGCCAGAGAGACGAGTTGCGCAA
66 CCGACGAAACGA---G-CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * * * *
14835697 GGCATGGATCGATAGGGTGTTAGGT-GGTTTAGGGACATCTCCATATTTTTGTGTGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
* *
14835761 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCTAAAGTTTCATGGCAAGAC
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14835826 GACTCATTTTCTATTTTT--C-A----TG--A----TT----TTC-A-A------AAAATTTTTC
257 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* * *
14835866 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT-TCTGGTATGCACAGAA
322 GAAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAAA
*
14835930 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTC
385 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * *
14835995 ATACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAG
450 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* ** * *
14836060 TTCTTGAATTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
515 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * *** * * ***
14836125 CATGTATGCACACCCCCCCCGAAACCCCCGATCGTCGAAACCCCAATGCTACCGGTCAGGTTCTC
580 CATG--TGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTC
* * * *
14836190 CAGCGATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
643 CGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGACACCAGCACATGCCCGAGCCC
** * * * * * * *
14836254 AATATGTGCTACTGGAACCCTCGATCCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTA
707 AGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
*
14836319 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGC
772 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * ** **
14836384 CAGAGGGGCGGGATGCGCAAGCCAGGGATCGGCCGGGTCCCCCTCTACGTGCTGTCAATCC
837 CAAAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCC
* * * * * * *
14836445 TACTATCGCAACCTTTGGTCTGGTCCGATCTTAGACTGGGAATGAA-TCCGTATGCCTAAGCGAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14836509 CCGACAAAACGAGCGGACGGGCAGGCGGGCACTACACCAGCCAGAGAGACGGGATGCGCAAGCCG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * * * *
14836574 TGGATCGATAGGATGGTAGGTGGGTTTACGTACATCTTCATATTTCTGCATGCCAATGCAATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* * * *
14836639 TATGGCTTGTAAATTCATACAATCGTCCCTTAAGCCTTCACATGAAGTTTCAAGGTAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * * *
14836704 CGGTTTCTATTTTTCATGATTTTTAAAAC-TTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT-GAA
* * * *
14836768 AGGAGTTTTGACACCAAACTTTGTAGACGTGATCCTTTTATTTCTT-TTGGCATGTA-AAAAAAT
325 AGGAGTTTTGGC-CCAAACTTGGTAGACGTGATCCTTGTATTT-TTGTTGGCATGCACAAAAAA-
* * *
14836831 ATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAA
387 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* * *
14836896 ACACTTTAATGGCTACTTGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAA-GGGTTGTGAGTT
452 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * * *
14836960 CTCGAGCTTTAATGAGGGATAGGGGGCCAATATTAGGGCCAAGTACTAGCACCCATCGCGCATCG
517 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
14837025 TGTGCGCACACCCCCCGGCCCCCCCGATCACCGGAACCCCAATACCGTCGGTCAGGTTCTCCGAC
582 TGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
*** * * * * * *
14837090 GATGCTCCAATGATGGTGCCCCGGCGATGAAAAATAC-ACAGCAGCACATGCCTGAGCGCAGCAT
647 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCAT
** * * * * ** *
14837154 GTGCTATCGTAACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCCAAATGCTTAGACTA
712 GTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * * * * * *
14837219 GGAATGAACTCCGTATGCCTAAGTAAACCAACAAAATGAGCGTGTGGGCGCTCAACCGGCCAGAG
777 GGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAG
* * * * * * **
14837284 GGGAGGGTTGCGTAAGCCGAGGATC-GACTGGGTCCCCCTCTACGTGCTACCAATCC
842 GGGCGGGATGCGCAAGTCGGGGATCGGTC-GGGTCCCCCTCTGTGTGCTACCAATCC
* * * * * * **
14837340 TACTACCGTAACCCTTGGTTTGGTTTGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* ** * * *
14837405 CCGATGAAACGAGCGAACGGGCGGGCGGGCACTACGCCGGCCAGAGAAACGGGATGCGCAAGTCA
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* *
14837470 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGGCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
* *
14837535 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTCCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * ** * *
14837600 CCTTTTCTATTTTTCACAATTTTGGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTGAA
*
14837665 AGGAGTTTTGGCCCCAAACCTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
325 AGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* **
14837730 TCAGCTAAAAACTCGAAGTGTACAAGATTTTATGGTCATTTGAAAAAAGTGTCCCCATTTCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
*
14837795 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * * * **
14837860 CGTGGTTTCATGAGGGATAGGGGGCCAATATAAGGGCCATGTAGCAGCACCCATCATACATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * *
14837925 TGCGTATA---------CCCCCCGATCACCGGAACCCCAATGCCGTCGATTAGGTTCTCCGACGA
584 TGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGA
* * *
14837981 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGT
649 TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGT
* * ** * *
14838046 GCTGTCGCAACCCTCGGTC-CATTTTGATCTTAGACTGGGAATTAACTCCGTATCCTTAGACTGG
714 GCTGCCGCAACCCTCGGTCTGA-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
*
14838110 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
778 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGG
* * * *** * *
14838175 GGCGGGATGCACAAGCCGGGGATCGATCGGGTCCCCCTCTACATGCTGCCGATCC
843 GGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCC
* * * * *
14838230 TGCTACCACAACCCTCGGTCTAGT-TCGATCTTAGACTGGGAATTAACTCCATATGCCTAAGCCA
1 TGCTACCGCAACCCTCGGTCTGGTCT-GATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
14838294 ACCGATGAAAGGAGCGGGCGGGCGGGCAGGCACTACGTCGGCTAGAGAGACGAGATGCGCAAGCT
65 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* * * * *
14838359 ATGGATCGATAGGGTGGTAGGTGGGTTTGGGGACATCTTCATAATTCTGTGTGCCAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
* * *
14838424 TTATGGCCTGTAAATTCATACAATGGTCCCTTTAGCCTTCACCTGAAGTTTCAT-GCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
** * * * *
14838488 TCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCAG
260 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGA-
* * * * *
14838553 AAGGAGTTGTGGCCCCAAGCTTGGTAGTCGTGATCCTTTTATTTTTGTTGGCATGCAAAAAAAAA
324 AAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* *
14838618 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTCACCATTTGAAAAAAGTATCCCCATTTCAGA
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
14838683 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
14838748 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAGGGGCCAATATAAGGGCCAAGTACCAGCACCC
518 TCGAGGTTTGATGAGGGATA----G--------GGGGCCAATATAAGGGCCAAGTACCAGCACCC
* * * *
14838813 ATCACACATCATGTGCGCACACCCCCCAGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTTA
571 ATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCA
* * * * ** *
14838878 GCTTCTCCAGCGATGCTTCGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCC
636 GGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCC
* ** * *
14838943 GAG-CCAGCATGTGCTGCCGCAACCTTCGGTCCAATCCGATCTTAGACTGAGAATGAACTCCATA
701 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * * * *
14839007 TGCTTAGACTGGGAATGAACTCTGTATGCCAAAGTCAAGCCACGAAATGAGCGTGCGGGCACTCA
766 TGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
* * * * * * * * *
14839072 ACAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG-CTAGGTCCCCCTTTGGGTGCTGCCTA
831 GCCGGCCAAAGGGGCGGGATGCGCAAGTCGGGGATCGGTC-GGGTCCCCCTCTGTGTGCTACCAA
14839136 TCC
895 TCC
*** * * * * * *
14839139 TGCTGTTGCAACCCTCAGTCTGATGC-AATCTTTGACTGGGAATGAACTCCATATGCCTAAGCCA
1 TGCTACCGCAACCCTCGGTCTGGT-CTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCA
* * *
14839203 ACCGACGAAACGAGCGGACGGGCGGGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCC
65 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
* *
14839268 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGACAATGCCATTT
130 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTT
** *
14839333 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCGTGGGAAGTTTCATGGCAAGACGAC
195 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * *
14839398 TCGTTTTCTATTTTCCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAG
260 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGA-
* * * * *
14839463 AAGGATTTTTGACCCCAAGCTTGGTAGACGTGATCCTTGTATTATTGTTGGCATGCACAAAACAA
324 AAGGAGTTTTG-GCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
** * *
14839528 TTCAGCTAAAAACTTAAAGTGTACAAGTTTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* * *
14839593 CACTTTAATGGCTACTGGAAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
14839658 TCAAGGGTTGATGAGGGATAGGGGGCCAATACAAGGGCCAAGTACCAGCACCCATCGCACATCAT
518 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * * * * *
14839723 GTGCGCACACCCCCCAGCCCCCCTGATCGTTGGAACCCCAATGCCGTCGGTCAGGTTTTTCGACG
583 GTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* **
14839788 ATGCTCTGATGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
648 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
* *
14839853 TGCTGCTGCAACCCACGGTCTGATCCGATCTTAGACT--G-A-G-A------ATG---A-AC---
713 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * * * * *
14839900 ---T----T-CGTATGCCAAAGTCAAGCCATGAAACGAGCGTGCGGGCGCTCGGCAGGGCAGAGG
778 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGG
* ** * * * ** *
14839957 GGCGGGATGCGCAAGCCGAAGATCGGTCAGGTCCCCCTTTGGGTGCTGTCGATCC
843 GGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCC
* * * * * * *
14840012 AGCTACTGCAACCCTCAGTCTGATCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
14840077 CCGATGAAATGAGCAGACGGGCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
* * *
14840142 TGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
*
14840207 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * *
14840272 CTTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTG-GAATTTTTTAAAATTTTTTTGG
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAG-ATTTTTTAAAA-TTTTTTGA
* * *
14840336 AAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCA-AAAAAAA
324 AAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
* * * *
14840400 TTCAGCTGAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTACAGA
388 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
14840465 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
453 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* * *
14840530 TCGAGGTTTAATGAGGGATAGGTGGCCAAATATAAGGGCCAAGTACCGGCACCCATCGCACATCA
518 TCGAGGTTTGATGAGGGATAGGGGGCC-AATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* ** * **
14840595 TGTGCG--CACCCCCTGGCCCCCCCGATTTTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGAT
582 TGTGCGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGC
* * *
14840658 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAC-AGCACCAGCACATGCCCGAGCCTAGCA
647 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCA
* ** * * *
14840722 TCTGCTGCCGCAATGCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
711 TGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * * *
14840787 GGGAATGAACTTCGTATGCCTAAGTCAACCAACAAAACGAGCGTGCGGGCGCTTAGCCGGCCAGA
776 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAA
* * * ** * * ** ** * *
14840852 GGGGCGAGATGCACAAGCCAAGGATAGGCCGGGTCCCCCTCTACGTGCTGTCGATCT
841 GGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCC
* * * ** * * * *
14840909 TACTGCCACAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTTCGGATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * ** * * * *
14840974 CCGACGAAATGAGCGGACGAACGGGTGGGCACTACACCGGCGAGAGAGACAGGATGCGCAAGCCG
66 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
14841039 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
131 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
*
14841104 TATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
196 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * * ** *
14841169 CCTTTTCTATTTTTCATGATTTTGGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTCTTTTGGA
261 CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATT-TTTTGAA
* *
14841234 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAAT
325 AGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
14841299 TCAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTTGAAAAAACTGTCCCCATTTTAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* *
14841364 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATATGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* * ** *
14841429 CGTGGTTTGATGAGGGCTAGGCAGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACATCATG
519 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* * * * * * *
14841494 TGCGCACACCCCCCCGGCCCCTCCGATCGTCGGAACCCCAATACCGCCAGTTAGGTTCTCCGACG
584 TGCGCACA-CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCG
* * * *
14841559 ATGCTCCAGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCGGCACATGCCCGAGCCCAGCATG
648 ATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATG
* * * * * * *
14841624 TGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATTAAATCCATATGCTTAGACTGG
713 TGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
14841689 GAATGAACTCCGTATGCCTACGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGCCGGCCAGAGG
778 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGG
* *
14841754 GGCAGGATGCGCAAG-CTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCC
843 GGCGGGATGCGCAAGTC-GGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCC
* ** ** *
14841809 TGCTACCACAACCCTCAATCCAGTCTGATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * ** **
14841874 CCGATGAAACGAGCGGACGGGCGGAAGGGCGGGCACTACGCCGGCTTGAGAGACAAGATGCGCAA
66 CCGACGAAACGAGCGGGCGGGC----GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * **
14841939 GCCGTGGATCGTTAGGGTGGTAGGTGGGTTTAGGGATATCTTCATATTTCTATGTGCCAATGCCA
127 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA
*
14842004 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCT-AATGTTTCATGGCAAGA
192 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA-GTTTCATGGCAAGA
* * ** ** *
14842068 TGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTT
256 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * * *
14842133 TCGGAAGGATTTTTAGCCCCAAAGTTGGTAGACGTGATCCTTGTATTCTTGCTGGCATGCACAAA
321 T-GAAAGGAGTTTT-GGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
14842198 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTT
384 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14842263 TAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTC-TTCAGGGGTGTGTG
449 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTG
14842327 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
513 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * ** *
14842392 ATCATCTGCGCACACCCCCCCGGCCCCCCTGATCACCGGAACCCCAATACCACCGGTTAGGTTCT
578 ATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT
* * ** * ** *
14842457 CCGGTGATGCTTCGATGATGGTGCCCC-AGTGAAGAAAAATAAGGCACCAGCACATGCCCGAGCC
642 CCGGCGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGACACCAGCACATGCCCGAGCC
* * * * *
14842521 CAGCATGTGCAGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGC
706 CAGCATGTGCTGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
14842584 CTAAGCCAAC
Statistics
Matches: 15653, Mismatches: 3017, Indels: 2567
0.74 0.14 0.12
Matches are distributed among these distances:
833 1 0.00
834 319 0.02
835 7 0.00
837 9 0.00
838 5 0.00
839 99 0.01
840 2 0.00
841 6 0.00
842 13 0.00
843 19 0.00
844 15 0.00
845 8 0.00
846 7 0.00
847 2 0.00
849 30 0.00
850 11 0.00
851 3 0.00
852 9 0.00
853 6 0.00
854 5 0.00
855 13 0.00
856 6 0.00
857 2 0.00
858 3 0.00
859 2 0.00
860 1 0.00
861 2 0.00
862 9 0.00
863 2 0.00
864 2 0.00
866 2 0.00
867 4 0.00
868 4 0.00
869 12 0.00
870 34 0.00
871 160 0.01
872 171 0.01
873 545 0.03
874 140 0.01
875 29 0.00
876 37 0.00
877 146 0.01
878 164 0.01
879 13 0.00
880 23 0.00
881 29 0.00
882 6 0.00
883 4 0.00
884 36 0.00
885 34 0.00
886 416 0.03
887 158 0.01
888 577 0.04
889 375 0.02
890 528 0.03
891 154 0.01
892 248 0.02
893 22 0.00
894 374 0.02
895 1133 0.07
896 375 0.02
897 661 0.04
898 918 0.06
899 1358 0.09
900 567 0.04
901 111 0.01
902 49 0.00
903 584 0.04
904 834 0.05
905 292 0.02
906 555 0.04
907 33 0.00
908 25 0.00
909 392 0.03
910 364 0.02
911 4 0.00
912 56 0.00
914 114 0.01
915 55 0.00
916 4 0.00
918 7 0.00
919 5 0.00
921 4 0.00
922 22 0.00
923 16 0.00
924 5 0.00
925 1 0.00
926 3 0.00
927 14 0.00
928 6 0.00
929 5 0.00
930 11 0.00
931 16 0.00
932 24 0.00
933 8 0.00
934 13 0.00
935 10 0.00
936 2 0.00
937 7 0.00
938 4 0.00
939 9 0.00
940 8 0.00
941 3 0.00
942 21 0.00
943 16 0.00
944 12 0.00
945 10 0.00
946 14 0.00
947 6 0.00
948 8 0.00
949 5 0.00
950 11 0.00
951 8 0.00
952 6 0.00
953 17 0.00
954 13 0.00
955 9 0.00
956 14 0.00
957 16 0.00
958 25 0.00
959 6 0.00
960 11 0.00
961 13 0.00
962 10 0.00
963 15 0.00
964 17 0.00
965 25 0.00
966 34 0.00
967 16 0.00
968 16 0.00
969 22 0.00
970 11 0.00
971 10 0.00
972 12 0.00
973 17 0.00
974 13 0.00
975 8 0.00
976 2 0.00
977 6 0.00
978 12 0.00
979 6 0.00
980 8 0.00
981 8 0.00
982 6 0.00
983 6 0.00
984 5 0.00
985 8 0.00
986 19 0.00
987 10 0.00
988 16 0.00
989 22 0.00
990 24 0.00
991 17 0.00
992 24 0.00
993 12 0.00
994 10 0.00
995 12 0.00
996 15 0.00
997 10 0.00
998 16 0.00
999 18 0.00
1000 9 0.00
1001 14 0.00
1002 11 0.00
1003 31 0.00
1004 29 0.00
1005 24 0.00
1006 24 0.00
1007 19 0.00
1008 31 0.00
1009 34 0.00
1010 27 0.00
1011 5 0.00
1012 24 0.00
1013 43 0.00
1014 142 0.01
1015 38 0.00
1016 31 0.00
1017 33 0.00
1018 28 0.00
1019 27 0.00
1020 25 0.00
1021 11 0.00
1022 47 0.00
1023 71 0.00
1024 98 0.01
1025 165 0.01
1026 127 0.01
1027 318 0.02
1028 95 0.01
1029 105 0.01
1030 107 0.01
1031 117 0.01
1032 148 0.01
1033 114 0.01
1034 53 0.00
1035 50 0.00
1036 37 0.00
1037 42 0.00
1038 64 0.00
1039 81 0.01
1040 72 0.00
1041 43 0.00
1042 70 0.00
1043 72 0.00
1044 48 0.00
1045 67 0.00
1046 25 0.00
1047 33 0.00
1048 33 0.00
1049 30 0.00
1050 25 0.00
1051 53 0.00
1052 25 0.00
1053 38 0.00
1054 17 0.00
1055 29 0.00
1056 27 0.00
1057 41 0.00
1058 36 0.00
1059 31 0.00
1060 202 0.01
1061 51 0.00
1062 53 0.00
1063 42 0.00
1064 52 0.00
1065 50 0.00
1066 39 0.00
1067 46 0.00
1068 54 0.00
1069 39 0.00
1070 16 0.00
1071 8 0.00
1072 232 0.01
1073 13 0.00
1074 23 0.00
1075 10 0.00
1076 7 0.00
1077 8 0.00
1078 29 0.00
1079 11 0.00
1080 2 0.00
1081 2 0.00
1082 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
TGCTACCGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCG
TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTT
TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
CGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTGAAA
GGAGTTTTGGCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
CGCACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATG
CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAA
TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGC
GGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCC
Found at i:14825201 original size:26 final size:26
Alignment explanation
Indices: 14825165--14825217 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14825155 CTGGTCCAAT
14825165 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14825191 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14825217 C
1 C
14825218 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14826089 original size:26 final size:26
Alignment explanation
Indices: 14826060--14826115 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
14826050 CTTGTTCGAT
* *
14826060 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14826086 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14826112 CTTA
1 CTTA
14826116 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.18, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14826983 original size:26 final size:26
Alignment explanation
Indices: 14826954--14827009 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
14826944 CCAGTCTGAT
14826954 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14826980 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14827006 CTTA
1 CTTA
14827010 AGTCAACCCA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14827896 original size:26 final size:26
Alignment explanation
Indices: 14827857--14827909 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14827847 TAGTCTAATT
* *
14827857 CTTAGACTGCGAATGAACTCTGTATG
1 CTTAGACTGCGAATGAAATCCGTATG
14827883 CTTAGACTAG-GAATGAAATCCGTATG
1 CTTAGACT-GCGAATGAAATCCGTATG
14827909 C
1 C
14827910 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 23 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGCGAATGAAATCCGTATG
Found at i:14829859 original size:26 final size:26
Alignment explanation
Indices: 14829823--14829878 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
14829813 CCGGTCTGAT
*
14829823 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTACACTGGGAATGAACTCT-GTATG
14829849 CTTACACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
14829875 CTTA
1 CTTA
14829879 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
26 27 0.96
27 1 0.04
ACGTcount: A:0.27, C:0.18, G:0.23, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:14830142 original size:154 final size:155
Alignment explanation
Indices: 14829858--14830199 Score: 382
Period size: 154 Copynumber: 2.2 Consensus size: 155
14829848 GCTTACACTG
* * * * * *
14829858 GGAATGAACTCTGTATGCTTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAAAG
1 GGAATGAACTCTATATGCCTAAGTCAACCCATAAAACGAGCATACGGGCGCTCAACCAGCCAAAG
* * * * * *
14829923 GGGCAGGATGCGCAAGCCGGGGATCATCCGGGTCCCCCTTTGCGTGCTACCGATACTGTTTCCGC
66 GGGCAGGATGCGCAAGCCGAGGATCATCCAGGTCCCCCTCTACGTGCTACCGATACTGCTACCGC
*
14829988 AACCCTCAGTC-TGATCTCAGACTT
131 AACCCTCAGTCTTGATCTCAGACTA
* * * *
14830012 GGAATGAAATCTATATGCCTAAGTCAACCCATAAAACGAGCATCCGGGTGCTCAACTAGCCAAAG
1 GGAATGAACTCTATATGCCTAAGTCAACCCATAAAACGAGCATACGGGCGCTCAACCAGCCAAAG
* * * * * *
14830077 GGGCGGGATGCGCAAGTCGAGGATCGGT-CAGGTCCCTCTCTACGTGCTGCCGATCCTGCTACCG
66 GGGCAGGATGCGCAAGCCGAGGATC-ATCCAGGTCCCCCTCTACGTGCTACCGATACTGCTACCG
* *
14830141 CAACCCTCGGTCTGGTTTGATCTTAGACTA
130 CAACCCTCAGTC----TTGATCTCAGACTA
* *
14830171 GGAATGAACTCCATATGCCTAAGCCAACC
1 GGAATGAACTCTATATGCCTAAGTCAACC
14830200 GACGAAACGA
Statistics
Matches: 154, Mismatches: 28, Indels: 7
0.81 0.15 0.04
Matches are distributed among these distances:
154 116 0.75
155 1 0.01
159 37 0.24
ACGTcount: A:0.24, C:0.29, G:0.26, T:0.21
Consensus pattern (155 bp):
GGAATGAACTCTATATGCCTAAGTCAACCCATAAAACGAGCATACGGGCGCTCAACCAGCCAAAG
GGGCAGGATGCGCAAGCCGAGGATCATCCAGGTCCCCCTCTACGTGCTACCGATACTGCTACCGC
AACCCTCAGTCTTGATCTCAGACTA
Found at i:14831788 original size:25 final size:25
Alignment explanation
Indices: 14831754--14831801 Score: 87
Period size: 25 Copynumber: 1.9 Consensus size: 25
14831744 TCCGATCTTA
14831754 GACTGGGAATGAACTCCATATGCTT
1 GACTGGGAATGAACTCCATATGCTT
*
14831779 GACTGGGAATGAACTCTATATGC
1 GACTGGGAATGAACTCCATATGC
14831802 CTAAGTAAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
GACTGGGAATGAACTCCATATGCTT
Found at i:14831832 original size:876 final size:882
Alignment explanation
Indices: 14830006--14831898 Score: 2502
Period size: 876 Copynumber: 2.1 Consensus size: 882
14829996 GTCTGATCTC
* * * * * * * **
14830006 AGACTTGGAATGAAATCTATATGCCTAAGTCAACCCATAAAACGAGCATCCGGGTGCTCAACTAG
1 AGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCATGCGAGCGCTCAGCCGG
* * * * *
14830071 CCAAAGGGGCGGGATGCGCAAGTCGAGGATCGGTCAGGTCCCTCTCTACGTGCTGCCGATCCTGC
66 CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
* *
14830136 TACCGCAACCCTCGGTCTGGTTTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCG
131 TACCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCG
* * * * *
14830201 ACGAAACGAGCGGGCGGACGGGCACTACACCGGCCAGAGAGACGGGCTATGCAAGCCATTGATCA
196 ACGAAACGAGCGGGCGGACAGGCACTACACCGACCAGAGAGACGGGATACGCAAGCCATGGATCA
* * * * ***
14830266 ATAGGGTGGTAGGTGGGTTTAAGCACGTCTTCATGTTTCTATGTGCCAATGCCATTTTTATTTTT
261 ATAGGGTGGTAGGTGCGATTAAGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
14830331 TGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
326 TGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
* * *
14830396 TGTTTTTCACGATTTTCAAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAGTT
391 TATTTTTCACGATTTTCAAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTCTCAAAAGGAGTT
14830461 TTGGCCCCAAACTTGGTAGACGGGATCATTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTA
456 TTGGCCCCAAACTTGGTA-A--GGATC----------TGTTGGCA-GCACAAAAACATTCAGCTA
*
14830526 AAAAATCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATATCAGACACTTTAA
507 AAAAATCAAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATATCAGACACTTTAA
*
14830591 TGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTCAGTTCTCAAGGTT
572 TGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGAGGTGTCAGTTCTCAAGGTT
* * *
14830656 TGATGAGGGATAGGGGGCCAATATAAGGGCCTAGTACCAGCACCTATCGCACATCATGTGCGCAC
637 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
* * *
14830721 AACCCCCCGGCCCCCCCGATCACCGGAACGCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCC
702 AACCCCCCGACCCCCCCGATCACCGGAACCCCAATGCCACCGATCAGGTTCTCCGGCGATGCTCC
* *
14830786 GACGACGGTGCCCCGATGAAGAAAAATGCGATACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
767 GACGACGGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCACGAGCCCAGCATGTGCTGCC
* * *
14830851 GCAACCCTCGGTCTGGTCTGATCTTATGCTGAGAATGAACTCCATATGCTT
832 GCAACCCTCGATCCGGTCCGATCTTATGCTGAGAATGAACTCCATATGCTT
** * * *
14830902 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGAGCGCTCAGCCGG
1 AGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCATGCGAGCGCTCAGCCGG
* ** * * *
14830967 CTAGAGGGGTAGGATGCACAAGCCGTGGATCGGCCGGGTCCCCCT-TTCTGTGCTGCCGATCCTG
66 CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTAC-GTGCTGCCGATCCTG
* * *
14831031 CTACCACAACCCTCGGTCTGGTCTGATCTTAGACTTGGAATGAACTCCGTATGCCTGAGCCAACC
130 CTACCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACC
* ** * *
14831096 GACGAAACGAGCGGACGGGCGAGCAGGCACTATGCCGACCAGAGAGACGGGATGCGCAAGCCGTG
195 GACGAAACGAGCGG--GCG-GA-CAGGCACTACACCGACCAGAGAGACGGGATACGCAAGCCATG
* * * * * *
14831161 GATCGATAGGGTGGTAGGTGCGATTAGGGATATCTTCGTATTTCTGTGTGCCAATGCCATTTTTA
256 GATCAATAGGGTGGTAGGTGCGATTAAGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTA
*
14831226 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
321 TGGCTTGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCA
* ** *
14831291 TTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTCTCAAAAG
386 TTTTCTATTTTTCACGATTTTCAAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTCTCAAAAG
* * * **
14831356 TAGTTTTGGTCCCAAACTTGGT-A-GA-C-G-TGG-A-CA-AAAAA-ATTCAGCTAAAAACTTGA
451 GAGTTTTGGCCCCAAACTTGGTAAGGATCTGTTGGCAGCACAAAAACATTCAGCTAAAAAATCAA
*
14831412 AGTGTACAAGATTTTGCGACCTTTTGAAAAAAGTGTCCCCACT-TCAGA-ACTTTAATGGCTACT
516 AGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCA-TATCAGACACTTTAATGGCTACT
* * * **
14831475 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGGGGTGTGAGTTCTCGGGGTTTGATGAGG
580 AGCAGCAAACCTGTAAAATCTCAAATGCTCTTGAAGGAGGTGTCAGTTCTCAAGGTTTGATGAGG
14831540 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC-ACCCTCC
645 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACCC-CC
* ** ** * * * *
14831604 CTGACCCCTCCGATCGGCGGAACCCCAATGCCGTCGATCAGGTTCTCCGGTGATGGTCCGGCGAT
709 C-GACCCCCCCGATCACCGGAACCCCAATGCCACCGATCAGGTTCTCCGGCGATGCTCCGACGAC
* * * ** * *
14831669 GGTGCCTCGCTGAAGAAAAATGCGGCACTGGCACATGCACGAGCCTAGCATGTGCTGCTGCAACC
773 GGTGCCCCGATGAAGAAAAATGCGACACCAGCACATGCACGAGCCCAGCATGTGCTGCCGCAACC
*
14831734 CTCGATCCGGTCCGATCTTA-GACTGGGAATGAACTCCATATGCTT
838 CTCGATCCGGTCCGATCTTATG-CTGAGAATGAACTCCATATGCTT
* * *
14831779 -GACTGGGAATGAACTCTATATGCCTAAGTAAACTCACAAAACGAGCTTGCGAGCGCTCAGCCGG
1 AGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCATGCGAGCGCTCAGCCGG
* * *
14831843 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCATCTATGTGCTGC
66 CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGC
14831899 TGCAACCCTC
Statistics
Matches: 870, Mismatches: 117, Indels: 40
0.85 0.11 0.04
Matches are distributed among these distances:
875 4 0.00
876 235 0.27
877 206 0.24
878 6 0.01
879 2 0.00
881 1 0.00
882 3 0.00
883 1 0.00
894 1 0.00
895 4 0.00
896 175 0.20
898 3 0.00
899 2 0.00
900 227 0.26
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (882 bp):
AGACTGGGAATGAACTCTATATGCCTAAGTCAACCCACAAAACGAGCATGCGAGCGCTCAGCCGG
CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTGC
TACCACAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGACAGGCACTACACCGACCAGAGAGACGGGATACGCAAGCCATGGATCA
ATAGGGTGGTAGGTGCGATTAAGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCT
TGTAAATTCAAACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
TATTTTTCACGATTTTCAAAAATTTTTACGGTTCGAGATTTTTTAAAATTTTCTCAAAAGGAGTT
TTGGCCCCAAACTTGGTAAGGATCTGTTGGCAGCACAAAAACATTCAGCTAAAAAATCAAAGTGT
ACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATATCAGACACTTTAATGGCTACTAGCAGC
AAACCTGTAAAATCTCAAATGCTCTTGAAGGAGGTGTCAGTTCTCAAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAACCCCCCGACCCC
CCCGATCACCGGAACCCCAATGCCACCGATCAGGTTCTCCGGCGATGCTCCGACGACGGTGCCCC
GATGAAGAAAAATGCGACACCAGCACATGCACGAGCCCAGCATGTGCTGCCGCAACCCTCGATCC
GGTCCGATCTTATGCTGAGAATGAACTCCATATGCTT
Found at i:14835316 original size:11 final size:11
Alignment explanation
Indices: 14835300--14835333 Score: 59
Period size: 11 Copynumber: 3.1 Consensus size: 11
14835290 GGTCAGGTTC
14835300 TTCGGTGATGG
1 TTCGGTGATGG
14835311 TTCGGTGATGG
1 TTCGGTGATGG
*
14835322 TTCGGCGATGG
1 TTCGGTGATGG
14835333 T
1 T
14835334 GCCCCGGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.09, C:0.12, G:0.44, T:0.35
Consensus pattern (11 bp):
TTCGGTGATGG
Found at i:14836318 original size:26 final size:26
Alignment explanation
Indices: 14836289--14836341 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14836279 CCGGTCCGAT
*
14836289 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14836315 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14836341 C
1 C
14836342 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14838110 original size:26 final size:26
Alignment explanation
Indices: 14838074--14838124 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14838064 CCATTTTGAT
*
14838074 CTTAGACTGGGAATTAACTCCGTATC
1 CTTAGACTGGGAATGAACTCCGTATC
14838100 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14838125 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATC
Found at i:14838786 original size:12 final size:12
Alignment explanation
Indices: 14838769--14838800 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
14838759 TGAGGGATAG
14838769 GGGGCCAATATA
1 GGGGCCAATATA
14838781 GGGGCCAATATA
1 GGGGCCAATATA
*
14838793 AGGGCCAA
1 GGGGCCAA
14838801 GTACCAGCAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.34, C:0.19, G:0.34, T:0.12
Consensus pattern (12 bp):
GGGGCCAATATA
Found at i:14840782 original size:26 final size:26
Alignment explanation
Indices: 14840753--14840805 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14840743 CCGGTTCGAT
14840753 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14840779 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14840805 C
1 C
14840806 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14841704 original size:26 final size:26
Alignment explanation
Indices: 14841653--14841705 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
14841643 CCGGTCCGAT
* *
14841653 CTTAGATTGGGAATTAAATCCATATG
1 CTTAGACTGGGAATGAAATCCATATG
* *
14841679 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCATATG
14841705 C
1 C
14841706 CTACGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCATATG
Found at i:14842171 original size:904 final size:900
Alignment explanation
Indices: 14839882--14842583 Score: 3874
Period size: 904 Copynumber: 3.0 Consensus size: 900
14839872 CTGATCCGAT
* * * * * *
14839882 CTTAGACTGAGAATGAACTTCGTATGCCAAAGTCAAGCCATGAAACGAGCGTGCGGGCGCTCGGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * * * * *
14839947 AGGGCAGAGGGGCGGGATGCGCAAGCCGAAGATCGGTCAGGTCCCCCTTTGGGTGCTGTCGATCC
66 CGGCCAGAGGGGC-GGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* ** *
14840012 AGCTACTGCAACCCTCAGT-CTGATCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCA
130 TGCTACCACAACCCTCAGTCCAG-TCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCA
* * * *
14840076 ACCGATGAAATGAGCAGACGGGC---GGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAA
194 ACCGATGAAATGAGCGGACGGGCGAAGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
* *
14840138 GCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
14840203 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAC
* * ** * *
14840268 GACTCTTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTTGGAATTTTTTAAAATTTTTT
389 GACTCCTTTTCTATTTTTCATGATTTTCGAAACTTTTTGTGGTTCGGGATTTTTTAAAA-TTTTT
* * *
14840333 TGGAAGGAATTTTGGCCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCA-AAAA
453 TGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * **
14840397 AAATTCAGCTGAAAATTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCGTTAC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT
14840462 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
14840527 TTCTCGAGGTTTAATGAGGGATAGGTGGCCAAATATAAGGGCCAAGTACCGGCACCCATCGCACA
648 TTCTCGAGGTTTGATGAGGGATAGGCGGCC-AATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** * *
14840592 TCATGTGCG--CA-CCCCCTGGCCCCCCCGATTTTCGGAACCCCAATACCGTCGGTCAGGTTCTC
712 TCATGTGCGCACACCCCCCCGG-CCCCCCGATCATCGGAACCCCAATACCGCCGGTTAGGTTCTC
*
14840654 CGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACA-GCACCAGCACATGCCCGAGCCT
776 CGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATA-AGGCACCAGCACATGCCCGAGCCC
* ** * *
14840718 AGCATCTGCTGCCGCAATGCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATG
840 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* *
14840779 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCAACAAAACGAGCGTGCGGGCGCTT-AG
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG-TTCAG
* * * * *
14840843 CCGGCCAGAGGGGCGAGATGCACAAGCCAAGGATAGGCCGGGTCCCCCTCTACGTGCTGTCGATC
65 CCGGCCAGAGGGGCG-GATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATC
* * * * ** ** *
14840908 TTACTGCCACAACCCTCGGTCTGGTCCAATCTTAGATTGGGAATGAACTTCGGATGCCTAAGCCA
129 CTGCTACCACAACCCTCAGTCCAGTCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCA
* * * *
14840973 ACCGACGAAATGAGCGGA----CGAACGGGTGGGCACTACACCGGCGAGAGAGACAGGATGCGCA
194 ACCGATGAAATGAGCGGACGGGCGAA-GGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCA
*
14841034 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCC
258 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* *
14841099 ATTTTTATGGCTTGTAAATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGA
* *
14841164 CGACTCCTTTTCTATTTTTCATGATTTTGGAAACTTTTTGTGGTTCGAGATTTTTTAAAATTCTT
388 CGACTCCTTTTCTATTTTTCATGATTTTCGAAACTTTTTGTGGTTCGGGATTTTTTAAAATT-TT
*
14841229 TTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAA
452 TTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14841294 AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTTGAAAAAACTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14841359 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGATATGA
582 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
14841424 GTTCTCGTGGTTTGATGAGGGCTAGGCAGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGCGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
14841489 TCATGTGCGCACACCCCCCCGGCCCCTCCGATCGTCGGAACCCCAATACCGCCAGTTAGGTTCTC
712 TCATGTGCGCACACCCCCCCGGCCCC-CCGATCATCGGAACCCCAATACCGCCGGTTAGGTTCTC
* ** *
14841554 CGACGATGCTCC-AGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCGGCACATGCCCGAGCCC
776 CGATGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATAAGGCACCAGCACATGCCCGAGCCC
* * * *
14841618 AGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGATTGGGAATTAAATCCATATG
840 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
* * *
14841679 CTTAGACTGGGAATGAACTCCGTATGCCTACGTCAACCCACGAAACAAGCGTGCGGGCGTTCAGC
1 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
* * * **
14841744 CGGCCAGAGGGGCAGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCCTCTGTGTGCTACCGATCC
66 CGGCCAGAGGGGC-GGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
* * * * *
14841809 TGCTACCACAACCCTCAATCCAGTCTGATCTTAGACTAGGAATTAACTCCGTATGCCTAAGCCAA
130 TGCTACCACAACCCTCAGTCCAGTCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAA
* ** *
14841874 CCGATGAAACGAGCGGACGGGCGGAAGGGCGGGCACTACGCCGGCTTGAGAGACAAGATGCGCAA
195 CCGATGAAATGAGCGGACGGGC-GAAGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAA
* * * *
14841939 GCCGTGGATCGTTAGGGTGGTAGGTGGGTTTAGGGATATCTTCATATTTCTATGTGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
*
14842004 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACCT-AATGTTTCATGGCAAGA
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAA-GTTTCATGGCAAGA
* * *
14842068 TGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTT
388 CGACTCCTTTTCTATTTTTCATGATTTTCGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTT
* * * *
14842133 TCGGAAGGATTTTTAGCCCCAAAGTTGGTAGACGTGATCCTTGTATTCTTGCTGGCATGCACAAA
453 T-GGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
14842198 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGGGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14842263 TAGACACTTTAATGGCTACTGGCAGCAAACATGTAAAATCTCAAATGCTC-TTCAGGGGTGTGTG
582 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTG
*
14842327 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGCGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
14842392 ATCATCTGCGCACACCCCCCCGGCCCCCCTGATCACCGGAACCCCAATACCACCGGTTAGGTTCT
711 ATCATGTGCGCACACCCCCCCGGCCCCCC-GATCATCGGAACCCCAATACCGCCGGTTAGGTTCT
* * * *
14842457 CCGGTGATGCTTCGATGATGGTGCCCC-AGTGAAGAAAAATAAGGCACCAGCACATGCCCGAGCC
775 CCGATGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATAAGGCACCAGCACATGCCCGAGCC
* *
14842521 CAGCATGTGCAGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
839 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
14842583 C
1 C
14842584 CTAAGCCAAC
Statistics
Matches: 1600, Mismatches: 177, Indels: 49
0.88 0.10 0.03
Matches are distributed among these distances:
893 1 0.00
896 3 0.00
897 483 0.30
898 151 0.09
899 9 0.01
900 324 0.20
901 1 0.00
903 16 0.01
904 608 0.38
905 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGTTCAGC
CGGCCAGAGGGGCGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGTCGATCCT
GCTACCACAACCCTCAGTCCAGTCTGATCTTAGATTGGGAATGAACTTCGTATGCCTAAGCCAAC
CGATGAAATGAGCGGACGGGCGAAGGGCGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGA
CTCCTTTTCTATTTTTCATGATTTTCGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTGG
AAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGCGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCGGCCCCCCGATCATCGGAACCCCAATACCGCCGGTTAGGTTCTCCGATG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAAGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATG
Found at i:14843303 original size:25 final size:26
Alignment explanation
Indices: 14843260--14843311 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
14843250 CCAGTCTGAT
14843260 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14843286 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14843311 C
1 C
14843312 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14844775 original size:24 final size:24
Alignment explanation
Indices: 14844743--14844788 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
14844733 CCATTTGATC
14844743 GCTACTGGCAGCAAACCTGTAATG
1 GCTACTGGCAGCAAACCTGTAATG
14844767 GCTACTGGCAGCAAACCTGTAA
1 GCTACTGGCAGCAAACCTGTAA
14844789 AATCTCAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.30, C:0.26, G:0.24, T:0.20
Consensus pattern (24 bp):
GCTACTGGCAGCAAACCTGTAATG
Found at i:14845793 original size:25 final size:26
Alignment explanation
Indices: 14845750--14845804 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 26
14845740 TCTGATCGAT
14845750 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
**
14845776 CTTAGACT-GGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14845801 CTTA
1 CTTA
14845805 AGTCAACCCA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 19 0.70
26 8 0.30
ACGTcount: A:0.29, C:0.18, G:0.22, T:0.31
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14848573 original size:879 final size:864
Alignment explanation
Indices: 14846630--14850004 Score: 4066
Period size: 893 Copynumber: 3.9 Consensus size: 864
14846620 TGTGTACTGT
* * * *
14846630 CGCAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATCGACG
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACG
* * *
14846695 -AA-TA--GA--------GCGGACGGGCACTATGTC-AGCCAGAGAGACGGGATGCGCAAGTCGT
66 AAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGA-CCAGAGAGACGGGATGCGCAAGTCGT
* *
14846747 GGATCGATAGGGTGGT-TGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCACTGCCATTTT
130 GGATCGATAGGGTGGTAT-GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTT
* ** *
14846811 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTTGTGGCAAGACAACT
194 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
** * * ** * *
14846876 AATTTTCTATATTTCATGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTTTC-A
259 CGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAA-TTTTTTCGA
* * * * *
14846940 AAGGAGTTTTGGCTCGAAACATGGTAGATGTGATCCTTGTAATTTTTTTTGGCATGCACAAAAAA
323 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT-ATTTTTGTTGGCATGCACAAAAAA
* * * *
14847005 AATCATCTAAAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGCGTCCCCATTTCAG
387 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
14847070 ACACTTTAATGGGTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTC
452 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTC
*
14847135 TCGAGGTTTGATGAGGGATAGGGGGCGAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
517 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * ** ** *
14847200 GTGCGCACACCCCTCTGACCCGTCCGATCGTCGGAACCCCAATGCCATCGATCAGGTTCTCCGAC
582 GTGCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATACCATCGATCAGG---T-----
* *
14847265 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCAT
639 --T-CTCCGACGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * * *
14847330 GTCCTGCCACAACCCTCGATCC-GGTTCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
701 GTGCTACCGCAACCCTCGCTCCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
14847394 AACCCACGAAATGAGCGTGAGGACGCTCAGTCGG-CA-A-------A--GAAAATTATGG--CA-
766 AACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGATGGAAAGTCAGGGATCAG
* * * * * * *
14847445 CC-AG-CACATGC-CCGAGCCGA-ACAT-GTGCTAC
831 CCGGGTCCCAT-CTACGTG-CTATAGATCCTGCTAC
* * * * * *
14847476 CGCAACCCTCGGTCTGGTCTGATCTTAGACTAGGAATGAACTACATATGCCTAAGCCAATCGATG
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACG
* * ** * * *
14847541 AAACAAGCGGGCGGAAGGGCGGGCGGGCACTATGTCGGCCAGAGAGATGGGATGCGCAAGTCGTG
66 AAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGTCGTG
* *
14847606 GATCGATAAGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA
131 GATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
14847671 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
196 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* *
14847736 TTTT-TTTATTTTCACGATTTTCAAAACTTTTTACGGTACGAGATTTTTTAAAATTTTTTCGGAA
261 TTTTCTAT-TTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC-GAA
* * *
14847800 A-GAGTTTTGGCCCCAAACTTGTTAGACGTGATCCTCGTATTTTTGTTGGCATGCACAAACAAAT
324 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
14847864 TCAGCTAAAAACTCAAAGTGGACAGGATTTTGTGACCATTTGAAAAAAGTTTCCCCATTTCAGAC
389 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAC
* * *
14847929 ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCCCAAATGCTTTTTAAGGTGGTGTGAGTTCT
454 ACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCT
*
14847994 CGAGGTTTGATGAGGGATAGGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCGCACATCATG
518 CGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATG
* ** * *
14848059 TGCGCACAGCCCCCCCGGCCACCTTGATCACCGGAACCCCAATACCGTCGGTCAGGTTCTCCGGT
583 TGCGCACA-CCCCCCCGGCCCCCCCGATCACCGGAACCCCAATACCATCGATCAGGTTCTCC---
*
14848124 GATGCTCCGGCGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCTT
644 GA--------CGATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCAT
14848189 GTGCTACCGCAACCCTCGCTCCAG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
701 GTGCTACCGCAACCCTCGCTCCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * *
14848253 AACCCACGAAACGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCGGAAGTCAGGGATT
766 AACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGC-GGATG-GAAAGTCAGGGATC
*
14848318 AGCCGGGTCTCCATCTACGTGCTATAGATCCTACTAC
829 AGCCGGGTC-CCATCTACGTGCTATAGATCCTGCTAC
* *
14848355 CGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCATATGCATAAGCCAACCGACG
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACG
* *
14848420 AAACGAGCGAGCGGGCGGGCGGGCGGGAACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTG
66 AAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGTCGTG
* * *
14848485 GATCGATAGGGTGGTATGTGGGTGTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTA
131 GATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
* * * *
14848550 TGGCCTGTAAATTCATCCAATGGTTCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCG
196 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
14848615 TTTTCTATTTTTCACAATTTTCAAAAATTTTTACAGTTC-AGGATTTTTTAAAATTTCTTCGGAA
261 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGAAA
* * *
14848679 GGAGTTTTGGCCCAAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGACTTGCAC-AAAAAATT
325 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
* *
14848743 CAGCTAAAAACTCGAAGTGTACAGGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACA
390 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* *
14848808 CTTCAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTTGTGAGTTCTT
455 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-TGTGAGTTCTC
* *
14848873 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGAACCCATCGCACATCCTGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
** * *
14848938 GCGCACACCCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCACCGATCAGGTTCTCCGACG
584 GCGCACA-CCCCCCCGGCCCCCCCGATCACCGGAACCCCAATACCATCGATCAGGTTCTCCGACG
* ** * *
14849003 ATGGTGCCACGACAAAGAAAAATACGGAACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAA
648 ATGGTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA
*
14849068 CTCTCAGTCTGGTCTGATCTTAGATTGGGATTGAACTCCGTATGCTTAGACTGGGAATGAACTCC
713 C-C-C--TC--G-C---TC---------CA--G-A-TCCG-AT-CTTAGACTGGGAATGAACTCC
* * *
14849133 GTATGCCTAAGTCAACCCACGAAATGAGTGTGCGGGCGCTTAGCCGGCCAGAGGGGCGAGATGTG
753 GTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCG-GATG-G
* * * * * * * * * * *
14849198 CAAGCCGGGGATCCGCTGGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGC
816 AAAGTCAGGGATCAGCCGGGT-CCCATCTACGTGCTATAGATCCTGCTAC
* * * * **
14849248 CGCAACACTCGATCCGGTCCGATCATAGATTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG
1 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACG
* * * * * ** *
14849313 AAATGAGTGAGTGGGCGGGCAGGCTGGCACTACACCGACCAAAGAGACGGGATGCGCAAGTCGTG
66 AAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGTCGTG
* * *
14849378 GATCGATAGGGTGGTAAGTGAGTTTAGGCACATCTTCATATTTCTACATGCCAGTGCCATTTTTA
131 GATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
*
14849443 TGGCTTGTAAATTCATACAATGTTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
196 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** * *
14849508 TTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGAAAG
261 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
* * * *
14849573 GATTTTTGGCCCCAAACTTTGTAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTC
326 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
14849638 AGCTAAAAAATCGAAGTGTACAAGATTTTGTTACCATTTGACAAAAA-TGTCCCCATTTCAGACA
391 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA-AAAAAGTGTCCCCATTTCAGACA
* *
14849702 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGTTATGAGTTCTC
455 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AAGGGGTGTGAGTTCTC
* *
14849767 GAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGT
519 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
14849832 GTGCGCA-CCCCCCGGCCCCCCCGATCACCGGAACCCTAATACCGTCGGTCAGGTTCTCCGACGA
584 GCGCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATACCATCGATCAGGTTCTCCGACGA
* * * **
14849896 TAGTGCCCC-AGCGAAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGGCGCAA
649 TGGTGCCCCGA-CAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA
* *
14849960 CCCTCGGTCC-GATCCAATCTTAGACTGGGAATGAACTCCGTATGC
713 CCCTCGCTCCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
14850005 TTGGACTGGG
Statistics
Matches: 2184, Mismatches: 255, Indels: 160
0.84 0.10 0.06
Matches are distributed among these distances:
846 59 0.03
847 2 0.00
848 5 0.00
849 1 0.00
850 1 0.00
851 2 0.00
856 1 0.00
857 137 0.06
858 317 0.15
859 176 0.08
860 3 0.00
861 1 0.00
866 27 0.01
867 64 0.03
868 4 0.00
869 3 0.00
870 1 0.00
871 2 0.00
872 7 0.00
873 1 0.00
874 2 0.00
875 4 0.00
876 1 0.00
877 8 0.00
878 252 0.12
879 340 0.16
880 2 0.00
882 2 0.00
886 2 0.00
888 3 0.00
890 1 0.00
891 6 0.00
892 106 0.05
893 446 0.20
894 185 0.08
895 10 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (864 bp):
CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACG
AAACGAGCGAGCGGGCGGGCGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGTCGTG
GATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGA
GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
GCACACCCCCCCGGCCCCCCCGATCACCGGAACCCCAATACCATCGATCAGGTTCTCCGACGATG
GTGCCCCGACAAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCC
TCGCTCCAGATCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAG
CGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGATGGAAAGTCAGGGATCAGCCGGGTCCCATCTAC
GTGCTATAGATCCTGCTAC
Found at i:14849122 original size:26 final size:26
Alignment explanation
Indices: 14849086--14849138 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14849076 CTGGTCTGAT
* *
14849086 CTTAGATTGGGATTGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14849112 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14849138 C
1 C
14849139 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14852464 original size:26 final size:26
Alignment explanation
Indices: 14852420--14852472 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14852410 CTGGTCCAAT
*
14852420 CTTAGACTGGCAATGAACTCCGTATG
1 CTTAGACTGGCAATCAACTCCGTATG
*
14852446 CTTAGACTAGG-AATCAACTTCGTATG
1 CTTAGACT-GGCAATCAACTCCGTATG
14852472 C
1 C
14852473 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATCAACTCCGTATG
Found at i:14853327 original size:26 final size:26
Alignment explanation
Indices: 14853287--14853337 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14853277 CCAGTCCGAT
** *
14853287 CTTAGACTGGGAATGAACTTCGTATA
1 CTTAGACTGAAAATGAACTCCGTATA
14853313 CTTAGACTGAAAATGAACTCCGTAT
1 CTTAGACTGAAAATGAACTCCGTAT
14853338 GCCTAAGTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.33, C:0.18, G:0.20, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAAAATGAACTCCGTATA
Found at i:14855006 original size:900 final size:897
Alignment explanation
Indices: 14853268--14858149 Score: 5943
Period size: 899 Copynumber: 5.5 Consensus size: 897
14853258 AATACGATGC
* * **
14853268 ACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACT-TCGTATACTTAGACTGAAAATGAACT
1 ACCCTCAGTCCGGT-CGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACT
* * * * *
14853332 CCGTATGCCTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCAACCAACCAAAGGGGCGGGATG
64 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATG
* * * * * * * *
14853397 CGCAAGTCGAGGATCGATCAGCTCACCCTCTACATGCTGCCGATCCTACTGCCGTAACCCTCGGT
129 CGCAAGTCGGGGATCGATCGGGTCACCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGT
* * * *
14853462 TCAGTCTGATCTTAGACTGGGAATGAACTCCATATGCCTCAGCCAACCGACGAAACGAGCGGGCG
194 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * *
14853527 GGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATTGATAGGGTGATAG
259 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* **
14853592 GTGGCTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT-
324 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
14853656 -AATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCATGA
389 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
*
14853720 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAC
454 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
14853785 GTGGTAGACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCAAAGT
519 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
14853850 GTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAACGGCTACTGACA
584 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
14853915 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTCGAGGTTTGATGAGAGATA
649 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
14853980 GGGGGTCAATATAAGGGCCAAGTA-CAGCACCCATCGCACATCATGT-CTGCACACCCCCCCGAC
714 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC-GCACA-CCCCCCGGC
* * * * * * ** *
14854043 CCCTTCCGATCATCGAAACCCCAATGCGGACGGTCAGGTTCTCCGACGATGCTCCGACGATGGTG
777 CCC-CCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGGCGATGGTG
* *
14854108 CCTCGGTGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACA
841 CCTCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC-CA
14854166 ACCCTCAGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
1 ACCCTCAGTCCGGT-CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
* * *
14854231 CTTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGATGC
65 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGC
** * * * *
14854296 GCAAGTCGGGGATCTTTCGGGTC-CCACTCTGCATGCTG-CTGATCCTGCTGCCGTATCCCTTGG
130 GCAAGTCGGGGATCGATCGGGTCACC-CTCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTCGG
* * * *
14854359 TCCGGTCTGATCTTAAACTGGGAATGAACTCCGTATGCCTTAGCCAACCGACGAAACGAGTGAGC
193 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * **
14854424 GGGTGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCATAAGCCGTGGATCGATAGGGTGGTA
258 GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
14854489 GGTGAGTTTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
323 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * *
14854554 ACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAAACGACTCATTTTTTATTTTTCACG
388 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACG
* * * *
14854619 ATTTTTGAAACTTTTTACGATTTGGGATTTTTTAAAAGTTTTTCGGAAGGAGTTTT-ACCCCAAA
453 ATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * *
14854683 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAAATTCAGCTAGAAATTCGAA
518 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAA
*
14854748 GTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGG
582 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* *
14854813 CAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGAGAGTTCTCGAGGTTTGATGAGGGA
647 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
14854878 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACGCAACATGTGCGCACACCCCCCCCG
712 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA--CCCCCCG
* * * * * *
14854943 GCCCCACCGATAGTC-GAACCCTAATGCCGTCGATCAGGTTCTGCGGTGATGCTTCGGCGATGGT
775 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGGCGATGGT
* * * * ** *
14855007 TCCTCGACGAAGAAATATGCGGCACCAGCACATGCCCGAGTGCAGCATGTGCTACCGCA
840 GCCTCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC-CA
14855066 A-CC-C--T-C-G--G----T---CT--G-AT---C-C-G-AT-CTTAGACTGGGAATGAACTCC
1 ACCCTCAGTCCGGTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
* * * *
14855106 GTATGCCTAAGTCAACCCACGAAACGA-CTGTACGGGCGCTCAGCC-AGCCAGACGGGCGAGATG
66 GTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCGCTCAACCGA-CCAGAGGGGCGGGATG
* * * * * * *
14855169 CGTAAGCCAGGGATCGGTCGGGTCACCCTTTGCGTGCTGTCGATCCTGCTGCCACAACCCTCGAT
129 CGCAAGTCGGGGATCGATCGGGTCACCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGT
* * * * * *
14855234 CTGGTCTGATCCTAGGCTTGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAATGAGCGGGCG
194 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * **
14855299 GGCGGGCAGGCACTACGCCGTCCAGAGAGACGGGATGCGCAAGTGGTGGATCGATAGGGTGGTAG
259 GGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
14855364 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCCTA
324 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * *
14855429 CAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTCACGA
389 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGA
* *
14855494 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAAC
454 TTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
*
14855559 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGT
519 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * *
14855624 GTACAAGATTTTGTGACTATTTGAAAAAAAGTGTCCCCATTTCAGACACTTTAAAGGTTACTGGC
584 GTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
14855689 AGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGAC
648 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * *
14855754 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACACCCCCCGACC
713 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCC
* ** * **** * * *
14855819 CCCCCGATCGTCGGAACCCCAATGTCGGGGATC-GG--CT-GGGTCCCCCT-CTGCG-TGCT-AC
778 CCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCC
*** * ** * *
14855877 -CGATCCTG----CTGTTGCA--A-C-C---CTCG-G-TC--C--G-G-T--CCT
843 TCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCCA
* * * * * ** ** ** * *
14855910 A-TCTTAGAT-TGG--GA-ATGA-ACT--CCAT--A-TGCT-TAAACTGGGAAT--GAACT--C-
1 ACCCTCAG-TCCGGTCGATCTTAGACTGGGAATGAACT-CTGTATGCTTAGACTGGGAA-TGAAC
* * * *
14855958 --CGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGCGCTCAACCGGCCAGAGGGGTGGGAT
63 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGAT
* * * * * * *
14856021 GCGCAAGTCGAGGATTGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGTTGTCGCAACCCTCCG
128 GCGCAAGTCGGGGATCGATCGGGTCACCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGG
* * * * *
14856086 TCTGGTCTGATCTTAAAATGGGAATGAACTCCGTATGCCTAAGCCAATCGACAAAACGAGCGGGC
193 TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* *
14856151 GGGCGGGCAGGTGGGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGGGT
258 GGGCGGGC----GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
14856216 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
319 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
**
14856281 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTGGTTTTCTATTTTT
384 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
* * *
14856346 CACCATTTTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTC-----G-G--TTGG---
449 CACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
* * * *
14856400 ------TGGTAGACATGATCCTTGTCTTTTTGTTGGCATGCACAAAAAAATTAAGCTAACAACTC
514 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
14856459 GAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATAGTTAC
579 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
14856524 TGGTAGCAAACCTTTAAAATCTCAAATGCTCTTTTAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
644 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
14856589 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACATCCCCC
709 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
* * * * * *
14856654 AG-CCCCCCGATCGTCGGAACCGCAATGCTGCCGGTTAGGTTCTCCGGTGATGCTCCGACGATGG
774 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGGCGATGG
* * *
14856718 TGCCACGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
839 TGCCTCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCC-CA
* * * * *
14856778 ACCCTCGGTCCGGTCTGATCTTACATTGGGAATGAACTCCGTGTGCTTAGACTGGGAATGAACTC
1 ACCCTCAGTCCGGTC-GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
* * * * *
14856843 CGTATGCCTAAGTCAACCCACGAAACGAACGTGCTGGCGCTCAACCGGCCAAAAGGGCGGGATGC
65 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGC
** * * * *
14856908 GCAAG-CTGGGGATCGGCCGGGTCTCCCTTTGCGTGCTGTCGATCCTACTGCCGCAACCCTCGAT
130 GCAAGTC-GGGGATCGATCGGGTCACCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGT
* * * *
14856972 CCAGTCTAATCTTAGACTGGGAATAAACTCCGTATGCCTAAGCCAACCGACGAAACAAGCGGGTG
194 CCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-G
* * * * * * **
14857037 GACGGACGGGTGGGCACTACGTCAGCCAGAGAGACGGAATGCGCAAGCCGTGGATTGATAGGACG
256 G-CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * * *
14857102 GTATGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATACCATTTTTAAGGCTTGTAAATT
320 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
14857167 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGAC-C-TGTTCTATTTTTC
385 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTC
** * * * * * * *
14857230 ATAATTTTTAAAAATTTTTTCAGTTCGAGATTTTTTAAAATTTGTTCGGAAGGAGTTTTGGCCCA
450 ACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* *
14857295 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGAC-TAGCAC-AAAACATTCAGCTAAAAACTC
515 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-GCACAAAAAAATTCAGCTAAAAACTC
* *
14857358 GAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTAC
579 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
14857423 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
644 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * * * *
14857488 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCAATCGCACATCCTGTGCGCACACCCACC
709 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC
*** *
14857553 -GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACAATGCTCCGGTGATGG
774 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGGCGATGG
* * ** *
14857617 TGCCCCGGTGAAGAAAAATAAGGCACCAGCACATGCTCGAGCCTAGCATGTGCTGCCCTA
839 TGCCTCGATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCC-A
* * *
14857677 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTT
1 ACCCTCAGTCCGGTC-GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTC
* *
14857742 CGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTCAACC-AGCCAGAGGGGCGGGATG
65 CGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGA-CCAGAGGGGCGGGATG
* * * * * *
14857806 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATGCTGCTACCACAACACTCGGT
129 CGCAAGTCGGGGATCGATCGGGTCACCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGT
* *
14857871 CCGGTCAT-ATCTTAGACTGGGAATCAACTCCGTATGCCGAAGCCAACCGACGAAACGAGCGGGC
194 CCGGTC-TGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
* * * *
14857935 TGGTGGGTGGGCTGGCACTACGCCGACCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGT
258 ----GGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
*
14858000 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
319 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAAT
* *
14858065 TCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGAATCATTTTCTATTTTT
384 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
* *
14858130 CATGATTTTTGAATCTTTTT
449 CACGATTTTTGAAACTTTTT
14858150 GCAGTGTCAT
Statistics
Matches: 3418, Mismatches: 442, Indels: 245
0.83 0.11 0.06
Matches are distributed among these distances:
838 27 0.01
839 158 0.05
840 80 0.02
841 2 0.00
842 5 0.00
843 3 0.00
844 6 0.00
845 2 0.00
846 5 0.00
847 1 0.00
848 2 0.00
849 7 0.00
850 4 0.00
851 1 0.00
852 2 0.00
853 171 0.05
854 5 0.00
855 5 0.00
857 222 0.06
858 4 0.00
859 7 0.00
860 1 0.00
861 1 0.00
862 5 0.00
863 1 0.00
864 1 0.00
865 1 0.00
866 4 0.00
867 2 0.00
868 6 0.00
869 9 0.00
870 5 0.00
871 2 0.00
872 2 0.00
873 25 0.01
874 473 0.14
875 198 0.06
876 3 0.00
877 1 0.00
878 3 0.00
879 7 0.00
880 1 0.00
881 5 0.00
882 1 0.00
883 50 0.01
884 3 0.00
885 313 0.09
887 2 0.00
888 3 0.00
889 8 0.00
891 5 0.00
894 1 0.00
895 2 0.00
896 3 0.00
897 4 0.00
898 345 0.10
899 729 0.21
900 403 0.12
901 58 0.02
902 13 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
ACCCTCAGTCCGGTCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCC
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGCG
CAAGTCGGGGATCGATCGGGTCACCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCC
GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG
CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATT
TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCC
CCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTCG
ATGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCCA
Found at i:14857725 original size:26 final size:26
Alignment explanation
Indices: 14857696--14857748 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14857686 CCGGTCTGAT
14857696 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14857722 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14857748 C
1 C
14857749 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14858752 original size:58 final size:58
Alignment explanation
Indices: 14858628--14858853 Score: 305
Period size: 59 Copynumber: 3.9 Consensus size: 58
14858618 TCTTGCGTAG
** * *
14858628 GGAAAATTGATACTTTCAACTTTTTTTCAAAAGTA-TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAA
*
14858685 GAAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTGAAAATTTATTTTTAA
* * * *
14858743 GGAAAATTGATACTTTCAACTTTTCCTCAAAAGTGCTTTTTTTGTAAACTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-ATTTTTTTGAAAATTTATTTTTAA
14858802 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTTGAAAATTT
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATA--TTTTTTTGAAAATTT
14858854 TGATTTTTTA
Statistics
Matches: 148, Mismatches: 14, Indels: 11
0.86 0.08 0.06
Matches are distributed among these distances:
56 1 0.01
57 29 0.20
58 52 0.35
59 53 0.36
60 13 0.09
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.47
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:14858797 original size:59 final size:57
Alignment explanation
Indices: 14858628--14858853 Score: 292
Period size: 58 Copynumber: 3.9 Consensus size: 57
14858618 TCTTGCGTAG
** * *
14858628 GGAAAATTGATACTTTCAACTTTTTTTCAAAAGTATTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAGTTTTTTTTGAAAATTTATTTTTAA
* *
14858685 GAAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAGT-TTTTTTTGAAAATTTATTTTTAA
* *
14858743 GGAAAATTGATACTTTCAACTTTTCCTCAAAAGTGCTTTTTTTGTAAACTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAGT--TTTTTTTGAAAATTTATTTTTAA
* *
14858802 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAAATTT
1 GGAAAATTGATACTTTCAACTTTT-CCT-CAAA-AGTTTTTTTTGAAAATTT
14858854 TGATTTTTTA
Statistics
Matches: 147, Mismatches: 15, Indels: 11
0.85 0.09 0.06
Matches are distributed among these distances:
56 1 0.01
57 28 0.19
58 51 0.35
59 46 0.31
60 16 0.11
61 3 0.02
62 2 0.01
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.47
Consensus pattern (57 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAGTTTTTTTTGAAAATTTATTTTTAA
Found at i:14858832 original size:117 final size:116
Alignment explanation
Indices: 14858628--14858853 Score: 364
Period size: 117 Copynumber: 1.9 Consensus size: 116
14858618 TCTTGCGTAG
** *
14858628 GGAAAATTGATACTTTCAACTTTTTTTCAAAAGTATTTTTTGGAAATTTATTTTTAAGAAAAATT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAGTATTTTTTGGAAACTTATTTTTAAGAAAAATT
14858693 GATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTGAAAATTTATTTTTAA
66 GATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTATTTTTAA
* * *
14858743 GGAAAATTGATACTTTCAACTTTTCCTCAAAAGTGCTTTTTTTGTAAACTTATTTTTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAGT--ATTTTTTGGAAACTTATTTTTAAGAAAAA
14858808 TTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTTTGAAAATTT
64 TTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTTGAAAATTT
14858854 TGATTTTTTA
Statistics
Matches: 101, Mismatches: 6, Indels: 4
0.91 0.05 0.04
Matches are distributed among these distances:
115 32 0.32
117 54 0.53
119 15 0.15
ACGTcount: A:0.34, C:0.11, G:0.08, T:0.47
Consensus pattern (116 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAGTATTTTTTGGAAACTTATTTTTAAGAAAAATT
GATACTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTATTTTTAA
Found at i:14858915 original size:9 final size:9
Alignment explanation
Indices: 14858883--14858908 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
14858873 AACAAAATAA
14858883 TAAAAAAAT
1 TAAAAAAAT
14858892 TAAAAAAAT
1 TAAAAAAAT
14858901 TAAAAAAA
1 TAAAAAAA
14858909 AGTAAAACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
TAAAAAAAT
Found at i:14858920 original size:22 final size:22
Alignment explanation
Indices: 14858895--14858958 Score: 60
Period size: 22 Copynumber: 2.9 Consensus size: 22
14858885 AAAAAATTAA
*
14858895 AAAAATTAAAA-AAAAGTAAAAC
1 AAAAATGAAAATAAAA-TAAAAC
14858917 AAAAATGAAAATAAAAT-AAAC
1 AAAAATGAAAATAAAATAAAAC
* * *
14858938 ATAAAAAGAATATTAAATAAA
1 A-AAAATGAAAATAAAATAAA
14858959 CCTAATCTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 5 0.14
22 24 0.69
23 6 0.17
ACGTcount: A:0.75, C:0.03, G:0.05, T:0.17
Consensus pattern (22 bp):
AAAAATGAAAATAAAATAAAAC
Found at i:14858974 original size:4 final size:4
Alignment explanation
Indices: 14858967--14859023 Score: 51
Period size: 4 Copynumber: 13.8 Consensus size: 4
14858957 AACCTAATCT
* * * *
14858967 AATA AATA AATA AACA AATA AATA AACA AATA AACA AAGA AATGAA AATA
1 AATA AATA AATA AATA AATA AATA AATA AATA AATA AATA AAT--A AATA
*
14859017 AAAA AAT
1 AATA AAT
14859024 TCAAAAAAAA
Statistics
Matches: 42, Mismatches: 9, Indels: 4
0.76 0.16 0.07
Matches are distributed among these distances:
4 38 0.90
6 4 0.10
ACGTcount: A:0.75, C:0.05, G:0.04, T:0.16
Consensus pattern (4 bp):
AATA
Found at i:14858987 original size:12 final size:12
Alignment explanation
Indices: 14858970--14859023 Score: 63
Period size: 12 Copynumber: 4.3 Consensus size: 12
14858960 CTAATCTAAT
14858970 AAATAAATAAAC
1 AAATAAATAAAC
14858982 AAATAAATAAAC
1 AAATAAATAAAC
* *
14858994 AAATAAACAAAG
1 AAATAAATAAAC
*
14859006 AAATGAAAATAAAA
1 AAAT--AAATAAAC
14859020 AAAT
1 AAAT
14859024 TCAAAAAAAA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
12 26 0.72
14 10 0.28
ACGTcount: A:0.76, C:0.06, G:0.04, T:0.15
Consensus pattern (12 bp):
AAATAAATAAAC
Found at i:14859395 original size:20 final size:20
Alignment explanation
Indices: 14859370--14859418 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
14859360 AGTTGAAGAT
*
14859370 TCATCGGATTCTGGGTTTTG
1 TCATCGGAATCTGGGTTTTG
*
14859390 TCATCGGAATCTGGGTTTTT
1 TCATCGGAATCTGGGTTTTG
*
14859410 TCGTCGGAA
1 TCATCGGAA
14859419 GTTCACCGGA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.14, C:0.16, G:0.29, T:0.41
Consensus pattern (20 bp):
TCATCGGAATCTGGGTTTTG
Found at i:14860052 original size:9 final size:9
Alignment explanation
Indices: 14860038--14860062 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
14860028 TAATAATAAT
14860038 AAATACATA
1 AAATACATA
14860047 AAATACATA
1 AAATACATA
14860056 AAATACA
1 AAATACA
14860063 AAAGAAAAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.68, C:0.12, G:0.00, T:0.20
Consensus pattern (9 bp):
AAATACATA
Found at i:14860285 original size:8 final size:7
Alignment explanation
Indices: 14860266--14860307 Score: 59
Period size: 7 Copynumber: 5.9 Consensus size: 7
14860256 AACATTGTCA
14860266 TTTTTTG
1 TTTTTTG
14860273 TTTTTTG
1 TTTTTTG
14860280 TGTTTTT-
1 T-TTTTTG
14860287 TTTTTTG
1 TTTTTTG
14860294 TTTTTTTG
1 -TTTTTTG
14860302 TTTTTT
1 TTTTTT
14860308 ACCAAAGCTC
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
6 5 0.16
7 15 0.47
8 12 0.38
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTTG
Found at i:14860292 original size:21 final size:20
Alignment explanation
Indices: 14860266--14860307 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 20
14860256 AACATTGTCA
14860266 TTTTTTGTTTTTTGTGTTTTT
1 TTTTTTGTTTTTT-TGTTTTT
14860287 TTTTTTGTTTTTTTGTTTTT
1 TTTTTTGTTTTTTTGTTTTT
14860307 T
1 T
14860308 ACCAAAGCTC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 8 0.38
21 13 0.62
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (20 bp):
TTTTTTGTTTTTTTGTTTTT
Found at i:14860527 original size:42 final size:42
Alignment explanation
Indices: 14860314--14860611 Score: 460
Period size: 42 Copynumber: 7.1 Consensus size: 42
14860304 TTTTACCAAA
* *
14860314 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-GAAA-AGTAAATT
* * *
14860357 GCTCCTCTAAACAGGGGCACCATGACTTTTGAAAA-TAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
* * *
14860398 ACTCCTCTAAACAGAGGCACAACGACTTT-GAAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
14860439 GCTCCTTTAAACAGAGGCACCACGACTTT-GAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
14860480 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
14860522 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
*
14860564 GCTCATCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
14860606 GCTCCT
1 GCTCCT
14860612 TAACAATCAT
Statistics
Matches: 237, Mismatches: 16, Indels: 5
0.92 0.06 0.02
Matches are distributed among these distances:
40 5 0.02
41 103 0.43
42 104 0.44
43 25 0.11
ACGTcount: A:0.37, C:0.23, G:0.17, T:0.23
Consensus pattern (42 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAAAGTAAATT
Found at i:14861837 original size:19 final size:19
Alignment explanation
Indices: 14861815--14861885 Score: 69
Period size: 18 Copynumber: 3.8 Consensus size: 19
14861805 TTGAATCTCC
14861815 TTTTTTCATTTTTCATTCT
1 TTTTTTCATTTTTCATTCT
**
14861834 TTTTTTC-TTTTTTTTTCT
1 TTTTTTCATTTTTCATTCT
14861852 TTTTTCATCATTTTT--TTC-
1 TTTTT--TCATTTTTCATTCT
*
14861870 TTTTCTCATTTTTCAT
1 TTTTTTCATTTTTCAT
14861886 CCATTGTTGA
Statistics
Matches: 44, Mismatches: 3, Indels: 11
0.76 0.05 0.19
Matches are distributed among these distances:
16 8 0.18
18 19 0.43
19 10 0.23
20 2 0.05
21 5 0.11
ACGTcount: A:0.08, C:0.15, G:0.00, T:0.76
Consensus pattern (19 bp):
TTTTTTCATTTTTCATTCT
Found at i:14861846 original size:10 final size:10
Alignment explanation
Indices: 14861823--14861856 Score: 50
Period size: 10 Copynumber: 3.2 Consensus size: 10
14861813 CCTTTTTTCA
14861823 TTTTTCATTCTT
1 TTTTTC-TT-TT
14861835 TTTTTCTTTT
1 TTTTTCTTTT
14861845 TTTTTCTTTT
1 TTTTTCTTTT
14861855 TT
1 TT
14861857 CATCATTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
10 14 0.64
11 2 0.09
12 6 0.27
ACGTcount: A:0.03, C:0.12, G:0.00, T:0.85
Consensus pattern (10 bp):
TTTTTCTTTT
Found at i:14861856 original size:29 final size:29
Alignment explanation
Indices: 14861815--14861873 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
14861805 TTGAATCTCC
14861815 TTTTTTCATTTTTCATTC-TTTTTTTCTTT
1 TTTTTTCATTTTTCA-TCATTTTTTTCTTT
*
14861844 TTTTTTCTTTTTTCATCATTTTTTTCTTT
1 TTTTTTCATTTTTCATCATTTTTTTCTTT
14861873 T
1 T
14861874 CTCATTTTTC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
28 2 0.07
29 26 0.93
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.80
Consensus pattern (29 bp):
TTTTTTCATTTTTCATCATTTTTTTCTTT
Found at i:14864049 original size:58 final size:58
Alignment explanation
Indices: 14863921--14864137 Score: 257
Period size: 61 Copynumber: 3.7 Consensus size: 58
14863911 TCTTGCGTAG
* * *
14863921 GGAAAATTGATACTTTCAACTTTTTTCC-AAAAGTA-TTTTTTGGAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAAC-TTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
*
14863978 -AAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
* * *
14864035 GGAAAATTGATACTTTCAACTTTT-CCTCAAAAGTGCCTTTTTTTGCTAAACA-TTATTTAT-A
1 GGAAAATTGATACTTTCAACTTTTCCCT-AAAAAT--ATTTTTTTG--AAA-ATTTATTTTTAA
*
14864096 GGAAAATTGATACTTTAAACTTTTCCCTAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT
14864138 TTGAATATTT
Statistics
Matches: 139, Mismatches: 11, Indels: 18
0.83 0.07 0.11
Matches are distributed among these distances:
55 6 0.04
56 24 0.17
57 24 0.17
58 27 0.19
59 7 0.05
60 8 0.06
61 29 0.21
62 13 0.09
63 1 0.01
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.46
Consensus pattern (58 bp):
GGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:14864123 original size:119 final size:114
Alignment explanation
Indices: 14863921--14864137 Score: 301
Period size: 119 Copynumber: 1.9 Consensus size: 114
14863911 TCTTGCGTAG
* * *
14863921 GGAAAATTGATACTTTCAACTTTTTTCCAAAAGTATTTTTTGGAAATTTATTTTTAAAAAAATTG
1 GGAAAATTGATACTTTCAACTTTTCTCCAAAAGTATTTTTTGGAAAATTATTTATAAAAAAATTG
*
14863986 ATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
66 ATACTTTAAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
* * **
14864035 GGAAAATTGATACTTTCAACTTTTC-CTCAAAAGTGCCTTTTTTTGCTAAACATTATTTATAGGA
1 GGAAAATTGATACTTTCAACTTTTCTC-CAAAAGT---ATTTTTTG-GAAA-ATTATTTATAAAA
14864099 AAATTGATACTTTAAACTTTTCCCTAAAAATATTTTTTT
60 AAATTGATACTTTAAACTTTTCCCTAAAAATATTTTTTT
14864138 TTGAATATTT
Statistics
Matches: 89, Mismatches: 8, Indels: 7
0.86 0.08 0.07
Matches are distributed among these distances:
113 1 0.01
114 31 0.35
117 7 0.08
118 3 0.03
119 47 0.53
ACGTcount: A:0.35, C:0.12, G:0.08, T:0.46
Consensus pattern (114 bp):
GGAAAATTGATACTTTCAACTTTTCTCCAAAAGTATTTTTTGGAAAATTATTTATAAAAAAATTG
ATACTTTAAACTTTTCCCTAAAAATATTTTTTTGAAAATTTATTTTTAA
Found at i:14864219 original size:21 final size:21
Alignment explanation
Indices: 14864180--14864228 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
14864170 AAATAATAAC
* *
14864180 AAAATTAAA-AAAATTAAAA-
1 AAAATAAAACAAAATGAAAAT
14864199 AAAAGTAAAACAAAATGAAAAT
1 AAAA-TAAAACAAAATGAAAAT
14864221 AAAATAAA
1 AAAATAAA
14864229 CATAAAAAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
19 4 0.16
20 4 0.16
21 13 0.52
22 4 0.16
ACGTcount: A:0.78, C:0.02, G:0.04, T:0.16
Consensus pattern (21 bp):
AAAATAAAACAAAATGAAAAT
Found at i:14864224 original size:5 final size:5
Alignment explanation
Indices: 14864170--14864315 Score: 54
Period size: 5 Copynumber: 27.8 Consensus size: 5
14864160 TAAAGAAAAC
* * *
14864170 AAATA ATAACA AAATTA AAA-A AATTA AAA-A AAAGTA AAACA AAATGA
1 AAATA A-AATA AAA-TA AAATA AAATA AAATA AAA-TA AAATA AAAT-A
* *
14864217 AAATA AAATA AACATA AAA-A GAAATT AAATA AACTA ATCTAAT- AAATA
1 AAATA AAATA AA-ATA AAATA -AAATA AAATA AAATA A---AATA AAATA
* *
14864265 AATAAA AAATA AAA-A AAA-A CAAATA AACAAA GAAATGA AAATA AAA-A
1 AA-ATA AAATA AAATA AAATA -AAATA AA-ATA -AAAT-A AAATA AAATA
14864312 AAAT
1 AAAT
14864316 TCAAAAAAAA
Statistics
Matches: 107, Mismatches: 14, Indels: 40
0.66 0.09 0.25
Matches are distributed among these distances:
4 20 0.19
5 47 0.44
6 34 0.32
7 4 0.04
8 2 0.02
ACGTcount: A:0.75, C:0.05, G:0.03, T:0.17
Consensus pattern (5 bp):
AAATA
Found at i:14864276 original size:11 final size:10
Alignment explanation
Indices: 14864260--14864336 Score: 64
Period size: 10 Copynumber: 7.3 Consensus size: 10
14864250 CTAATCTAAT
14864260 AAATAAATAAA
1 AAATAAA-AAA
14864271 AAATAAAAAA
1 AAATAAAAAA
*
14864281 AAACAAATAAA
1 AAATAAA-AAA
* **
14864292 CAAAGAAATGA
1 -AAATAAAAAA
14864303 AAATAAAAAA
1 AAATAAAAAA
*
14864313 AATTCAAAAAA
1 AAAT-AAAAAA
*
14864324 AAAGAAAAAA
1 AAATAAAAAA
14864334 AAA
1 AAA
14864337 CCTGGAGCGG
Statistics
Matches: 53, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
10 28 0.53
11 19 0.36
12 6 0.11
ACGTcount: A:0.82, C:0.04, G:0.04, T:0.10
Consensus pattern (10 bp):
AAATAAAAAA
Done.