Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 76 of 195
Found at i:14864314 original size:31 final size:31
Alignment explanation
Indices: 14864270--14864330 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 31
14864260 AAATAAATAA
14864270 AAAATAAAAAAAAA-CAAATAAACAAAGAAATG
1 AAAATAAAAAAAAATCAAA-AAA-AAAGAAATG
*
14864302 AAAATAAAAAAAATTCAAAAAAAAAGAAA
1 AAAATAAAAAAAAATCAAAAAAAAAGAAA
14864331 AAAAAACCTG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 7 0.26
32 16 0.59
33 4 0.15
ACGTcount: A:0.80, C:0.05, G:0.05, T:0.10
Consensus pattern (31 bp):
AAAATAAAAAAAAATCAAAAAAAAAGAAATG
Found at i:14864688 original size:20 final size:20
Alignment explanation
Indices: 14864665--14864704 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
14864655 TTCATCAGAT
14864665 TCTGGGTTTTGTCATCGGAA
1 TCTGGGTTTTGTCATCGGAA
* *
14864685 TCTGGGTTTTTTCGTCGGAA
1 TCTGGGTTTTGTCATCGGAA
14864705 GTTCACCGGA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.12, C:0.15, G:0.30, T:0.42
Consensus pattern (20 bp):
TCTGGGTTTTGTCATCGGAA
Found at i:14865286 original size:31 final size:29
Alignment explanation
Indices: 14865222--14865293 Score: 78
Period size: 27 Copynumber: 2.5 Consensus size: 29
14865212 ATACAATAAG
14865222 ATAAATAAA-AAAAATATTACAAGAAAAA
1 ATAAATAAATAAAAATATTACAAGAAAAA
*
14865250 A-AAATAAATAAAAATA-TACATATAATAATA
1 ATAAATAAATAAAAATATTACA-AGAA-AA-A
*
14865280 ATAAATACATAAAA
1 ATAAATAAATAAAA
14865294 TACAAAAGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 7
0.80 0.04 0.15
Matches are distributed among these distances:
27 11 0.30
28 11 0.30
29 2 0.05
30 2 0.05
31 11 0.30
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.22
Consensus pattern (29 bp):
ATAAATAAATAAAAATATTACAAGAAAAA
Found at i:14865510 original size:8 final size:7
Alignment explanation
Indices: 14865491--14865530 Score: 55
Period size: 7 Copynumber: 5.7 Consensus size: 7
14865481 AACATTGTCA
14865491 TTTTTTG
1 TTTTTTG
14865498 TTTTTTG
1 TTTTTTG
*
14865505 TGTTTT-
1 TTTTTTG
14865511 TTTTTTG
1 TTTTTTG
14865518 TTTTTTTG
1 -TTTTTTG
14865526 TTTTT
1 TTTTT
14865531 ACCAAAGCTC
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
6 5 0.17
7 17 0.59
8 7 0.24
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (7 bp):
TTTTTTG
Found at i:14865516 original size:20 final size:19
Alignment explanation
Indices: 14865491--14865530 Score: 71
Period size: 20 Copynumber: 2.1 Consensus size: 19
14865481 AACATTGTCA
14865491 TTTTTTGTTTTTTGTGTTTT
1 TTTTTTGTTTTTT-TGTTTT
14865511 TTTTTTGTTTTTTTGTTTT
1 TTTTTTGTTTTTTTGTTTT
14865530 T
1 T
14865531 ACCAAAGCTC
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.35
20 13 0.65
ACGTcount: A:0.00, C:0.00, G:0.12, T:0.88
Consensus pattern (19 bp):
TTTTTTGTTTTTTTGTTTT
Found at i:14865691 original size:42 final size:40
Alignment explanation
Indices: 14865537--14865741 Score: 209
Period size: 41 Copynumber: 4.9 Consensus size: 40
14865527 TTTTACCAAA
* *
14865537 GCTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTG-G-AA-ATAAATT
* * *
14865580 GCTCCTCTAAACAGGGGCACCATGACTTTTGAAAATAAATT
1 GCTCCTCTAAACAGAGGCACCACGAC-TTTGGAAATAAATT
* *
14865621 ACTCCTCTAAACAGAGGCACAACGACTTT-GAAAT-AATT
1 GCTCCTCTAAACAGAGGCACCACGACTTTGGAAATAAATT
14865659 GCGTCCTCTTAAACAAGACGGCACCACGACTTTGGAAAGTTAAATT
1 GC-TCCTC-TAAAC-AGA-GGCACCACGACTTTGGAAA--TAAATT
14865705 GCTCC-CTTAAACAGAGGCACCAACCGACTTTGGAAAT
1 GCTCCTC-TAAACAGAGGCACC-A-CGACTTTGGAAAT
14865742 GTAGCAATTG
Statistics
Matches: 139, Mismatches: 12, Indels: 23
0.80 0.07 0.13
Matches are distributed among these distances:
38 5 0.04
39 9 0.06
40 8 0.06
41 32 0.23
42 22 0.16
43 30 0.22
44 23 0.17
45 4 0.03
46 6 0.04
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.23
Consensus pattern (40 bp):
GCTCCTCTAAACAGAGGCACCACGACTTTGGAAATAAATT
Found at i:14865703 original size:84 final size:81
Alignment explanation
Indices: 14865538--14865741 Score: 234
Period size: 84 Copynumber: 2.4 Consensus size: 81
14865528 TTTACCAAAG
* * *
14865538 CTCCTCTAAACAGAGGCTCAACGACTTTGAGAAACATAAATTGCTCCTCTAAACAGGGGCACCAT
1 CTCCTCTAAACAGAGGCACAACGACTTTG-G-AA-ATAAATTGCTCCTCTAAACAGCGGCACCAC
*
14865603 GACTTTTGAAAATAAATTA
63 GACTTTGGAAAATAAATTA
14865622 CTCCTCTAAACAGAGGCACAACGACTTT-GAAAT-AATTGCGTCCTCTTAAACAAGACGGCACCA
1 CTCCTCTAAACAGAGGCACAACGACTTTGGAAATAAATTGC-TCCTC-TAAAC-AG-CGGCACCA
* *
14865685 CGACTTTGGAAAGTTAAATTG
62 CGACTTTGGAAA-ATAAATTA
14865706 CTCC-CTTAAACAGAGGCACCAACCGACTTTGGAAAT
1 CTCCTC-TAAACAGAGGCA-CAA-CGACTTTGGAAAT
14865742 GTAGCAATTG
Statistics
Matches: 105, Mismatches: 6, Indels: 15
0.83 0.05 0.12
Matches are distributed among these distances:
79 6 0.06
80 7 0.07
81 7 0.07
82 3 0.03
83 18 0.17
84 49 0.47
85 3 0.03
86 7 0.07
87 5 0.05
ACGTcount: A:0.35, C:0.25, G:0.17, T:0.24
Consensus pattern (81 bp):
CTCCTCTAAACAGAGGCACAACGACTTTGGAAATAAATTGCTCCTCTAAACAGCGGCACCACGAC
TTTGGAAAATAAATTA
Found at i:14867026 original size:11 final size:10
Alignment explanation
Indices: 14866992--14867056 Score: 51
Period size: 10 Copynumber: 6.1 Consensus size: 10
14866982 TTGAATCTCC
14866992 TTTTTTCATTT
1 TTTTTTC-TTT
14867003 TTTCATTTC-TT
1 TTT--TTTCTTT
*
14867014 TTTTTCCTTT
1 TTTTTTCTTT
14867024 TTTTTTCTTT
1 TTTTTTCTTT
**
14867034 TTTCATCATATT
1 TTTTTTC-T-TT
14867046 TTTTTTCTTT
1 TTTTTTCTTT
14867056 T
1 T
14867057 CTCATTTTTC
Statistics
Matches: 43, Mismatches: 6, Indels: 11
0.72 0.10 0.18
Matches are distributed among these distances:
9 3 0.07
10 19 0.44
11 10 0.23
12 7 0.16
13 4 0.09
ACGTcount: A:0.08, C:0.14, G:0.00, T:0.78
Consensus pattern (10 bp):
TTTTTTCTTT
Found at i:14867047 original size:19 final size:18
Alignment explanation
Indices: 14867024--14867065 Score: 50
Period size: 19 Copynumber: 2.3 Consensus size: 18
14867014 TTTTTCCTTT
14867024 TTTTTTCTT-TTTTCATCA
1 TTTTTTCTTCTTTTC-TCA
*
14867042 TATTTTTTTTCTTTTCTCA
1 T-TTTTTCTTCTTTTCTCA
14867061 TTTTT
1 TTTTT
14867066 CATCCATTGT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
18 5 0.24
19 11 0.52
20 5 0.24
ACGTcount: A:0.10, C:0.14, G:0.00, T:0.76
Consensus pattern (18 bp):
TTTTTTCTTCTTTTCTCA
Found at i:14873066 original size:59 final size:59
Alignment explanation
Indices: 14872936--14873096 Score: 236
Period size: 60 Copynumber: 2.7 Consensus size: 59
14872926 TCTTGTGTAG
*** *
14872936 GGAAAATTGATACTTTCAACTTTTCCTCAAAAACCCCTTTTTTTGAAAATTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-ATATTTTTTTGAAAACTTATTTTTAA
*
14872996 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATATTTTTTT-TAAACTTATTTTTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAA-ATATTTTTTTGAAAACTTATTTTTAA
*
14873055 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTT
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAATATTTTTTT
14873097 CTGGAAATTT
Statistics
Matches: 94, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
57 10 0.11
58 5 0.05
59 39 0.41
60 40 0.43
ACGTcount: A:0.34, C:0.14, G:0.06, T:0.45
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAAATATTTTTTTGAAAACTTATTTTTAA
Found at i:14873154 original size:10 final size:9
Alignment explanation
Indices: 14873137--14873196 Score: 66
Period size: 10 Copynumber: 6.2 Consensus size: 9
14873127 ACATAATAAT
14873137 AAAAAAATA
1 AAAAAAATA
14873146 AATAAAAATA
1 AA-AAAAATA
*
14873156 AAAAAAAGA
1 AAAAAAATA
*
14873165 AAGAAAAGTA
1 AA-AAAAATA
14873175 AAAAAAATGA
1 AAAAAAAT-A
14873185 AAATAAAATA
1 AAA-AAAATA
14873195 AA
1 AA
14873197 GATAAAAAGA
Statistics
Matches: 43, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
9 15 0.35
10 23 0.53
11 5 0.12
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.12
Consensus pattern (9 bp):
AAAAAAATA
Found at i:14873155 original size:18 final size:18
Alignment explanation
Indices: 14873129--14873180 Score: 59
Period size: 19 Copynumber: 2.8 Consensus size: 18
14873119 TAAAGAAAAC
* *
14873129 ATAATAATAAAAAAATAA
1 ATAAAAATAAAAAAAGAA
14873147 ATAAAAATAAAAAAAAGAA
1 ATAAAAAT-AAAAAAAGAA
* *
14873166 AGAAAAGTAAAAAAA
1 ATAAAAATAAAAAAA
14873181 ATGAAAATAA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
18 14 0.48
19 15 0.52
ACGTcount: A:0.81, C:0.00, G:0.06, T:0.13
Consensus pattern (18 bp):
ATAAAAATAAAAAAAGAA
Found at i:14873161 original size:19 final size:18
Alignment explanation
Indices: 14873137--14873196 Score: 66
Period size: 19 Copynumber: 3.1 Consensus size: 18
14873127 ACATAATAAT
14873137 AAAAAAATAAATAAAAATA
1 AAAAAAATAAA-AAAAATA
* *
14873156 AAAAAAAGAAAGAAAAGTA
1 AAAAAAATAAA-AAAAATA
14873175 AAAAAAATGAAAATAAAATA
1 AAAAAAAT-AAAA-AAAATA
14873195 AA
1 AA
14873197 GATAAAAAGA
Statistics
Matches: 34, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
19 24 0.71
20 10 0.29
ACGTcount: A:0.82, C:0.00, G:0.07, T:0.12
Consensus pattern (18 bp):
AAAAAAATAAAAAAAATA
Found at i:14873594 original size:21 final size:20
Alignment explanation
Indices: 14873555--14873593 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
14873545 GGTTGAAGAT
14873555 TCACCGAATTTTGGGTTTTG
1 TCACCGAATTTTGGGTTTTG
14873575 TCACCGGAA-TTTGGGTTTT
1 TCACC-GAATTTTGGGTTTT
14873594 TTGGCCGAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 15 0.83
21 3 0.17
ACGTcount: A:0.15, C:0.15, G:0.26, T:0.44
Consensus pattern (20 bp):
TCACCGAATTTTGGGTTTTG
Found at i:14874255 original size:21 final size:20
Alignment explanation
Indices: 14874212--14874299 Score: 58
Period size: 20 Copynumber: 4.3 Consensus size: 20
14874202 TTACAAGAAA
*
14874212 AAAAATAAATAAATAAAATT
1 AAAAATAAATAAATAAAAAT
14874232 AAAAATATAAT-AATAAATAAT
1 AAAAATA-AATAAATAAA-AAT
* *
14874253 -AAAATACATAAAATACAAAAG
1 AAAAATAAAT-AAATA-AAAAT
*
14874274 AAAAGA-AAAGAAA-AAAAAT
1 AAAA-ATAAATAAATAAAAAT
*
14874293 AATAATA
1 AAAAATA
14874300 CAAAGTAAAA
Statistics
Matches: 53, Mismatches: 7, Indels: 17
0.69 0.09 0.22
Matches are distributed among these distances:
18 1 0.02
19 10 0.19
20 20 0.38
21 14 0.26
22 7 0.13
23 1 0.02
ACGTcount: A:0.75, C:0.02, G:0.03, T:0.19
Consensus pattern (20 bp):
AAAAATAAATAAATAAAAAT
Found at i:14874854 original size:26 final size:26
Alignment explanation
Indices: 14874818--14874870 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14874808 CTGATCTGAT
14874818 CTTAGACTGGGAATGAACTCCATATA
1 CTTAGACTGGGAATGAACTCCATATA
*
14874844 CTTAGACTGGGAATGAACTCCCTATA
1 CTTAGACTGGGAATGAACTCCATATA
14874870 C
1 C
14874871 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATA
Found at i:14877345 original size:26 final size:26
Alignment explanation
Indices: 14877309--14877361 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14877299 CCAGTCCGAT
14877309 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCTATATG
* *
14877335 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTATATG
14877361 C
1 C
14877362 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTATATG
Found at i:14877902 original size:892 final size:885
Alignment explanation
Indices: 14874844--14878447 Score: 4559
Period size: 895 Copynumber: 4.1 Consensus size: 885
14874834 ACTCCATATA
* * * * *
14874844 CTTAGACTGGGAATGAACTCCCTATACCTAAGCCAACCGACAAAATGAACGGGCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A--GACGGGC-GGC-GG
* * * *
14874909 CGGGCACCACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGT-GTAGGT-GGT
61 CGGTCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * *
14874972 TTAGGCACATCTTCTTATTTCTGCATGTCAATGCCATTTTTATGACTTGTAAATTCATACAATGG
126 TTAGGCACATCTTCATATTTCT-CGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGG
* * **
14875037 TCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACGACTCGTTTTCTGTTTTTCACGATTTTTG
190 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
** * *
14875102 AAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAATGAGTTTTAGCCCCAAACTTGGTA
255 AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
14875167 GACGTGATACTTGTATTTTTTTTGGCATCCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
320 GACGTGATCCTTGTATTTTTATTGGCGTGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
14875232 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGTAGCAAAC
384 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
14875297 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTCTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
449 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
14875362 CAATATAAGAGCCAAGTACCGGCACCCATCGCACATCGTGTGCGCACACCCCCCCGGCCCCCTCG
514 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GACCCC-CG
* * * * *
14875427 ATCATGGGAACCCCAATGCCGCCGGTCAAGTTTTCCGACGATGCTCCGATGATGGTGCCCCGACG
577 ATCGTCGGAACCCCAATGCCGTCGGTC-AG------G--TATGCTCCGACGATGGTGCCCCGACG
* * ***
14875492 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGC-TGGTGCTGCCGTAACCCTCGGT-CAG-
633 AAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCAT-GTGCTGCTACAACCCTCGGTCCAGT
14875554 --G-TC-----------TG--------AT-CTTAGACTGGGAATGAACT-TCGTATGCCTAAGTC
697 CCGATCTTAGATGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTC
*** * * *
14875595 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGTTGGAGGGGCGGGATGCGCAAGTCGGGGATC
761 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAAGGGCGGGATGCGAAACTCGGGGATC
*** * ** * * *
14875660 GGTTGGGTCACCCTCTGCGTGCTGTCGATCTTGCTGGCACAACCCTCGGTCTGGTCTGAT
826 GACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGATCTGGTCCGAT
** * *
14875720 CTTAGACTGGGAATGAACTCTATATGCCTAATCCAACCGACGAAAC-A-A-GTG-GGC-G-GGT-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGGGCGGCGGCGGTC
* * *
14875778 ACTACGCCGACCA-AGGGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
66 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
* * * *
14875842 CACATCTTCATATTTATGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCC
131 CACATCTTCATATTTCT-CGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCT
**
14875907 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACT
195 TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACT
* * * * *
14875972 TTTTGCGGTTCAAGATTTTTTAAAATTTCTTCAGATGGAGTTTTGGCCCCAAACTTGGTAGACAT
260 TTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGT
* *
14876037 GATCCTTGTATTTTTATTGGCGTACACAAAAAAATTCAGCTAAAAACTCGAAGTGTCCAAGATTT
325 GATCCTTGTATTTTTATTGGCGTGCA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
14876102 TGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATTGCTACTGGCAGCAAACTTGTA
389 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
*
14876167 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAATA
454 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
14876232 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCACCCCCGATCGTT
519 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-ACCCCCGATCGTC
* * *
14876297 AGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGGCCCGACGAAGAAA
583 GGAACCCCAATGCCGTCGGTCAGG---T------ATGCTCCGACGATGGTGCCCCGACGAAGAAA
* * * *
14876362 AATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTACAACCCTCGGT-CTGATCTGATC
639 AATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCTACAACCCTCGGTCCAG-TCCGATC
*
14876426 TTAGATCGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCTA
703 TTAGAT-GGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCA
* * * *
14876491 CGAAACGAGCGTGCGGGTGCTCAACCGACCA-AAGGGGCGGGATGCGCAAGC-CAGGGATCGACC
767 CGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAA-GGGCGGGATGCG-AAACTCGGGGATCGACC
* * * * * * *
14876554 GGGTCCCCCTCTGCGTGCTGCCGATCCTACTTCCGCAACCCTCGATTTGGTCCAAT
830 GGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGATCTGGTCCGAT
*
14876610 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCATA-CGACGAAACGAG-CGGGC-G-GGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA-ACCGACGAAACGAGACGGGCGGCGGCGGT
** * *
14876671 CACTACATCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAAGGTGGTAGGTGGGTTTAG
65 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * *
14876736 GCACATCTTCATATTTCTCTATGCCAATGCCATTTTAATGGCTTGTTAATTCATACAGTGGTCCC
130 GCACATCTTCATATTTCTC-GTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCC
* * *
14876801 TTAAGCCTTCACATCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAAC
194 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAAC
* * * *
14876866 TTTTTACGGTTCGGGATTGTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
259 TTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
14876931 TGATCATTGTATTTTTATTGGCATGCAAAAAAACATTCAGCTAAAAACTCGAAGTGTATAAGATT
324 TGATCCTTGTATTTTTATTGGCGTGCAAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
14876996 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGCAAACCTGT
388 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
*
14877061 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
453 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* *
14877126 ATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGCACACCCCCCGGTACCCCCGATCGT
518 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-ACCCCCGATCGT
*
14877191 CGGAACCCCAATGCCGTCGGTCAGGT-T-CTCCGACGATGGTGCCCCAACGAAGAAAAATGCGGC
582 CGGAACCCCAATGCCGTCGGTCAGGTATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGC
*
14877254 ACCAGCACATGCCTGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCAGTCCGATCTTAGACTGG
647 ACCAGCACATGCCTGAGCCCAGCATGTGCTGCTACAACCCTCGGTCCAGTCCGATCTTAGA-TGG
* * *
14877319 GAATGAACTCTATATGCTTAGATTGGGAATGAACTCTGTATGCCTAAGTTAACCCACGAAACGAG
711 GAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * *
14877384 CATGCAGGCGCTCAGTCGGCCAGAAGGGCGGGATGCGAAACTCGGGGATCAACCGGGTCCCACTC
776 CGTGCGGGTGCTCAGCCGGCCAGAAGGGCGGGATGCGAAACTCGGGGATCGACCGGGTCCCCCTC
* * * * *
14877449 TGCGTGTTACCGATCTTGCTGCCGCAACCCTCGGTCTGGTCTGGT
841 TGCGTGCTACCGATCTTGCTGCCACAACCCTCGATCTGGTCCGAT
* * *
14877494 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAATGAAACGAGTGGACGGGCGGTCGGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA---GACGGGCGG-CGG-
* *
14877559 CGGTCATTACGCCGGCCAGAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
61 CGGTCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * * * *
14877624 TTAGGCACATTTTTATATTTCTACGTGACAAAGGCATTTTAATGGCATGTAAATTCATACAATGG
126 TTAGGCACATCTTCATATTTCT-CGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGG
* *
14877689 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACACGACTCGTTTTCTATTTCTCACGATTTTCA
190 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
** * * *
14877754 AAACTTTTTGTAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGTGTTGTGGCTCCAAACTTGGTA
255 AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
14877819 GACGTGATCCTTTTATTTTTGTTGGCGTGCTAAAAAAAATTCATCTAAAAACTCAAAGTGTACGA
320 GACGTGATCCTTGTATTTTTATTGGCGTGC-AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * *
14877884 GATTTTATGACCATTTGAAAAAAGTTTCCCGATTTCAGACACTTTAATGGCTACTAGCAGCAAAC
384 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
14877949 CTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGAGC
449 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
14878014 CAATATAAAGGCCAAGTACCAGCACCCATCAG-ACATCATGTGCGCACAGCCCCCCCGACCCCTC
514 CAATATAAGGGCCAAGTACCAGCACCCATC-GCACATCATGTGCGCACA-CCCCCCCGA-CCC-C
* *
14878078 CGATCGTCGGAACCCCAATGTTGTCGATCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGA
575 CGATCGTCGGAACCCCAA---TGCCG-TC-GG---TCAGGT-ATGCTCCGACGATGGTGCCCCGA
* * * **
14878143 CGAAGAAAAATGCGGCACCAGCGCATGCCCT-AGCCCAGCATGTGCTACCACAACCCTCGGTCTG
631 CGAAGAAAAATGCGGCACCAGCACATG-CCTGAGCCCAGCATGTGCTGCTACAACCCTCGGTCCA
* * * * ** *
14878207 GTCCGATCTTAGGTTGGGAATTAACTCCGTATGTTTAGACTGGGAATGAACTCCATATGCCAAAG
695 GTCCGATCTTA-GATGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAG
* * * * * *
14878272 TCAACCCACGAAACGAACGTTCGGGTGCTCAGCCGGCCAGAGGGGCAGGATGCGCAACCCGGGGA
759 TCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAAGGGCGGGATGCGAAACTCGGGGA
* *
14878337 TCGATCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGATCCGGTCCGAT
824 TCGACCGGGTCCCCCTCTGCGTGCTACCGATCTTGCTGCCACAACCCTCGATCTGGTCCGAT
* *
14878399 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
14878448 CGTGTGGGCG
Statistics
Matches: 2381, Mismatches: 264, Indels: 140
0.85 0.09 0.05
Matches are distributed among these distances:
857 1 0.00
858 1 0.00
863 34 0.01
864 118 0.05
865 423 0.18
866 1 0.00
868 4 0.00
869 2 0.00
870 2 0.00
874 1 0.00
876 40 0.02
881 2 0.00
883 4 0.00
884 276 0.12
885 6 0.00
887 1 0.00
888 5 0.00
889 4 0.00
890 169 0.07
891 6 0.00
892 449 0.19
893 21 0.01
894 35 0.01
895 480 0.20
897 4 0.00
898 2 0.00
899 2 0.00
902 6 0.00
904 1 0.00
905 277 0.12
906 4 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (885 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGACGGGCGGCGGCGGTC
ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGG
CACATCTTCATATTTCTCGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTT
AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
TTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
ATCCTTGTATTTTTATTGGCGTGCAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCGATCGTCGGA
ACCCCAATGCCGTCGGTCAGGTATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
GCACATGCCTGAGCCCAGCATGTGCTGCTACAACCCTCGGTCCAGTCCGATCTTAGATGGGAATG
AACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
GGGTGCTCAGCCGGCCAGAAGGGCGGGATGCGAAACTCGGGGATCGACCGGGTCCCCCTCTGCGT
GCTACCGATCTTGCTGCCACAACCCTCGATCTGGTCCGAT
Found at i:14878590 original size:171 final size:171
Alignment explanation
Indices: 14878305--14878654 Score: 470
Period size: 171 Copynumber: 2.0 Consensus size: 171
14878295 GGTGCTCAGC
* * * *
14878305 CGGCCAGAGGGGCAGGATGCGCAACCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCT
1 CGGCCAGAAGGGCAGGATGCGCAACCCGAGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCT
* * *
14878370 TGCTGCCACAACCCTCGATCCGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAA
66 TGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* * *
14878435 CTGACGAAACGAGCGTGTG-GG-CGGGCGGGCGGGAACTACGT
131 CCGACGAAACGAGC-TG-GCGGACGGGCGGACAGGAACTACGT
* * * *
14878476 CGGCCAGAAGGGCGGGATGCTCAAGCCGAGGATCGGCCGAGTCCCCCTCTGCGTGCTACCGATCT
1 CGGCCAGAAGGGCAGGATGCGCAACCCGAGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCT
* ** * * *
14878541 TGCTATCGGAACCCTCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
66 TGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* *
14878606 CCGACGAAACGAGCTGGCGGACGGGCGGATAGGCACTACGT
131 CCGACGAAACGAGCTGGCGGACGGGCGGACAGGAACTACGT
14878647 CGGCCAGA
1 CGGCCAGA
14878655 GAGACAGGAT
Statistics
Matches: 155, Mismatches: 22, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
169 1 0.01
170 4 0.03
171 150 0.97
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.17
Consensus pattern (171 bp):
CGGCCAGAAGGGCAGGATGCGCAACCCGAGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCT
TGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCTGGCGGACGGGCGGACAGGAACTACGT
Found at i:14880199 original size:26 final size:26
Alignment explanation
Indices: 14880162--14880213 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14880152 CGGTCTGATC
14880162 TTAGACTAGGAATGAACTCCATATGA
1 TTAGACTAGGAATGAACTCCATATGA
* *
14880188 TTAGACTGGGAATGAACTCCGTATGA
1 TTAGACTAGGAATGAACTCCATATGA
14880214 CAAAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.35, C:0.15, G:0.23, T:0.27
Consensus pattern (26 bp):
TTAGACTAGGAATGAACTCCATATGA
Found at i:14884507 original size:26 final size:26
Alignment explanation
Indices: 14884471--14884526 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
14884461 CTGGTCCGAT
*
14884471 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACGCCCTATG
*
14884497 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCCTATG
14884523 CTTA
1 CTTA
14884527 AGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCCTATG
Found at i:14885388 original size:26 final size:26
Alignment explanation
Indices: 14885352--14885404 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14885342 CTGGTTCAAT
*
14885352 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14885378 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
14885404 C
1 C
14885405 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:14889548 original size:26 final size:25
Alignment explanation
Indices: 14889511--14889562 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
14889501 CCGGTCTGAT
*
14889511 CTTAGATGGGAACGAACTTCGTATG
1 CTTAGATGGGAACGAACTCCGTATG
*
14889536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGA-TGGGAACGAACTCCGTATG
14889562 C
1 C
14889563 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGATGGGAACGAACTCCGTATG
Found at i:14890039 original size:908 final size:902
Alignment explanation
Indices: 14887141--14891354 Score: 5090
Period size: 907 Copynumber: 4.6 Consensus size: 902
14887131 TGAACTCCGT
* *
14887141 ATGCCATTTTTATGGCTTGTAAATTCCTACAATGGTCCCTTAAGCCTTCACGTGATGTTTCATGG
1 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * ** *
14887206 CGAGACGACTCATTTTCTATTTTTCACGATTTTTTTAACTTTTTGCGGTTCGTGATTTTTTAAAA
66 CAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAA
*
14887271 -TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGC
131 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-
* * *
14887335 AAAAAATAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTAACCTTTTGAAAAAAGTGTCCC
195 AAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
14887400 CA-TTCAGACACTTTAATGGCTACTGGCAACAAACTTGTAAAATCTCAAATGCTTTTTAAGGGGG
260 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* ** * * *
14887464 TGTGAGTTGTCGAGGTTTGATGAGGGATAGGGGGTGAATATAAGGGTCAAGCACCAGCACTCATC
325 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* ** * *
14887529 GCACATCATGTGCACACACCCCCCCGGGCCCCATCGATCG-CCAGAACCCCAATGCCGCCGGTTA
390 GCACATCATGTGCGCACACCCCCCC-GGCCCCCCCGATCGTCGA-AACCCCAATGCCGCCGGTCA
* * * * * * *
14887593 GGTTCTCC-AGTGATGCCCCAACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCATAAG-T
453 GGTTCTCCGA-CGATGCTCCAATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * *
14887656 TCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCGATCTTGGACTGGGAATGAACTCCG
517 T-GAGCCCAGCATGTGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCG
* * *
14887721 TATGCTTACACTGGGAATGAACTCCGTATGCCTCAA-TTAACCCACGAAACGAGCGTGCGGGTGC
581 TATGCTTAGACTGGGAATGAACTCCGTATGCCT-AAGTCAACCCACGAAACGAGCGTGCGGGCGC
* * * ** * *
14887785 TCAACCGGCCAGATGGGCAGGATACGTAAGCCGAGGATCGGCCCGGTCCCCCTCTGCGTGCT-AT
645 TCAACCAGCCAGAGGGGCAGGATGCGTAAGCCGAGGATCGGCTGGGTCCCCCTCTACGTGCTGCT
*
14887849 CGATCCTACTGCCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
710 -GATCCTACTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * * *
14887914 AGCCAACTGACAAAATGAGCGGGAGGACGTGCGGGCAGGCACTACGTCGGCCAGAGAGACGGGAT
774 AGCCAACCGACGAAA-CAACGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGAT
* * * * *
14887979 GCGCAAGCTGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTACGTGCCA
838 GCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
*
14888044 ATTCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
1 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * * * *
14888109 CAAGACGAGTCGTTTTCTATTTTTCCTGATTTTTGAAACTTTTTACGGTTCGGGATTTTTGAAAA
66 CAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAA
* * * *
14888174 TTTTTTGGGAAGGAGTTTTGGGCCCAAACTTGGTAGACATGATCCATGTATTTTTGTTGGCATGC
131 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-
* *
14888239 ACAAAAAAATTCAGCTAAAAACTCGAAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCC
195 AAAAAAAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
14888304 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
259 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
14888369 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCAT
324 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * * ** * *
14888434 CGCACATTATGTGCGCACACCCCCCCCGACCCCCCTGATCGCTCG-AACCTTAATGACACCGGTC
389 CGCACATCATGTGCGCACA-CCCCCCCGGCCCCCCCGATCG-TCGAAACCCCAATGCCGCCGGTC
* * * * *
14888498 AGGTTCTCCGACGATGCTCCGATGATGGTGCCCCGATGAAAAAAAAATGTGACACCAGCACATGC
452 AGGTTCTCCGACGATGCTCCAATGATGGTGCCCCGACG-AAGAAAAATGCGGCACCAGCACATGC
* * * *
14888563 CCGAGCCTAGCATGTG-TGGCCGCAACCCTCGA-TCCAGTTTGATCTTAGATTGGGAATGAACTC
516 CTGAGCCCAGCATGTGCT-GCCGCAACCCTC-ACTCCAGTCTGATCTTAGACTGGGAATGAACTC
* * * * ** * *
14888626 CGTACGCTTAGACTGGGAATGAATTCCGTTTGCCTAAGTTAACCCATAAAACGAGTGTGCGGGTG
579 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * ** * *
14888691 CTCAGCC-GACCAGATGGGCAGGATGC-TCAAGCTGGGGATCGATTGGGTCTCCCTCTGCGTGCT
644 CTCAACCAG-CCAGAGGGGCAGGATGCGT-AAGCCGAGGATCGGCTGGGTCCCCCTCTACGTGCT
** * ** * * *
14888754 GCAAATCCTACTATCGCAACCCTCAGTCTGGTCTGATGTTAGACTGGGAATGAACTTCGTATGCC
707 GCTGATCCTACTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
14888819 TAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCAGGCAGGCACTACGTCGGCCAGAGAGACGTG
772 TAAGCCAACCGACGAAACAA-CGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGG
* * ** * *
14888884 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGCTTTAGGCATGTCTTCATACTTCTACGTGC
836 ATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
14888949 CA
901 CA
* *
14888951 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCATGTGAAGTTTCATGG
1 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
** *
14889016 CAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTAG-GGCTCGAGATTTTTTAAA
66 CAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTT-GCGGTTCGAGATTTTTTAAA
*
14889080 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGGCATG
130 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
*
14889145 AACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAGCATTTGAAAAAAGTGTCC
195 AA-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
*
14889210 CCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
259 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
*
14889275 GTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-CACCCAT
324 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
* * *
14889339 CGCACATCATGTGTGCACACCCCCCTTCGGCCCCCCCGATCGTCGAAACCCTAATGCCGTCGGTC
389 CGCACATCATGTGCGCACACCCCCC--CGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTC
* * *
14889404 AGGTTCTCCGACAATGCTCCAATGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCC
452 AGGTTCTCCGACGATGCTCCAATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC
* * * * * *
14889469 TGGGCCCAGCATGTGCTACCGTAACCCTCACTCCGGTCTGATCTTAGA-TGGGAACGAACTTCGT
517 TGAGCCCAGCATGTGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGT
* * *
14889533 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAACCACGAAACGAGCGTACGGGCACTC
582 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* ** *
14889598 AGCCAGCCAGAGGGGTGGGATGCGTAAGCCG-GGAATCGGCTAGGTCCCCCTCTACGTGCTGCTG
647 AACCAGCCAGAGGGGCAGGATGCGTAAGCCGAGG-ATCGGCTGGGTCCCCCTCTACGTGCTGCTG
* * * *
14889662 ATCCTGCTACCGCAACCCTCAGTTCAGTCCAATCTTAGACTGGGAATGAACTCCGTATACCTAAG
711 ATCCTACTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * ** *
14889727 CCAACCGACGACACGAACGGGCGTGCAGGCGGGCGGGCGGGCAAAACGCCGACCAGAGAGACGGG
776 CCAACCGACGAAAC-AACGGGC--G--GGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGG
* * *
14889792 ATGTGCAAGCCGTGAATCGATAGGGTGGTGGGTGGGTTTAGCCACATCTTCATATTTCTACATGC
836 ATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGC
14889857 CA
901 CA
*
14889859 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGG
1 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * * * * *
14889924 CAAGACAATTCATTTTCTATTTTTCGTTATTTTCAAAACTTTTTGTGGTTC-AGGATTTTTTTAA
66 CAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGA-GATTTTTTAAA
* * * *
14889988 ATTTTTTTGGAAGGAGTTTTGGACCCAAACTTGGTAGACCTGATCCTTGTATTTTTTTTGGCATT
130 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCA-T
*
14890053 CAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
194 GAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* ** ** ** *
14890118 CCATTTCAAACACTTTAATGGCTAGGGGGCGTGAGTTCTCGAGGTTTCAAACA-CTCAAATGCTC
259 CCATTTCAGACACTTTAATGGCTA-CTGGC---AG--C-AAACCTGT-AAA-ATCTCAAATGCTC
14890182 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
315 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* *
14890247 AGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTTGGAACCCCAATGCC
380 AGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCC
* * * * *
14890311 GCCGGTCTGGTTCTCTGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCCCCAGC
445 GCCGGTCAGGTTCTCCGACGATGCTCCAATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* **
14890376 ACATTCCCAAGCCCAGCATGTGCTGCCGC-A-----AC-CC--TC-GA---T---CT-GG--T--
510 ACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGA
* * *
14890420 -CT--G-AT-CTTCGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGTG
575 ACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCG
* * * * * *
14890480 GGCGCTCAATCAACCAGAGGGGCGGGATGCGCAAGCTGAGGATC-GATCGGGTCCCCCTCTACGT
640 GGCGCTCAACCAGCCAGAGGGGCAGGATGCGTAAGCCGAGGATCGGCT-GGGTCCCCCTCTACGT
* * * * * * *
14890544 GCTGCCGATCCTGCTGCCGCAACCCTCTGTCCAGTCTGATCTTAGAATGGGAATGAACTCCGTTT
704 GCTGCTGATCCTACTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTAT
* * * * * *
14890609 GCCTAAGACAACCAACGAAACGAGCGGGCGGGCAGGCGGGCGGGCATTACGCCGGCCAGAGAGAC
769 GCCTAAGCCAACCGACGAAAC-AACGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGAC
* * * * *
14890674 AGGATGCGCAAGCCG-CAGATCGATAGGGTGCTAGGTGAGTTTAGGCACATCTTCATATTTCTGC
833 GGGATGCGCAAGCCGTGA-ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
14890738 ATGCCA
897 ATGCCA
*
14890744 ATGCCATTTTTATGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
1 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* *
14890809 CAAGACGACTCGTTTTCTATTTTCATGATTTTCAAAACTTTTTACGGTTCGAGATTTTTTAAAAT
66 CAAGACGA--C----TC-ATTTTC-------T----A-TTTTT-C--AT---GA-TTTTTAAAAC
* *
14890874 TTTTTGCTGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
105 TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
14890939 TGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
170 TGATCCTTGTATTTTTGTTGGCATG-AAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
** * *
14891004 TTGTGACCAGCTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTAT
234 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* *
14891069 AAAAGCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGGACAAT
299 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
14891133 ATAATGGCCAAGTACGAGCACCTATCGCACATCAAGTGCGCACACCGGCCCCGG-CCCCCCGATC
364 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGGCCCCCCCGATC
* * * * ** * *
14891197 GTCGGAACCCCAATGCCACCCGTCAGGTTCTCC-AGTGATGCTCCAGCGATCGTGCCCCGGCGAA
428 GTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCAATGATGGTGCCCCGACGAA
* * * * * * *** ** *
14891261 GAAAAATACGGCACCAGCACATGCCTGAGCCTATCATGTGCTGGCACAACCTTTGGTCTGGTCCG
492 GAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCACTCCAGTCTG
* *
14891326 CTCTTAGACTGGGAATGAACTCTGTATGC
557 ATCTTAGACTGGGAATGAACTCCGTATGC
14891355 CTAAGTCAAC
Statistics
Matches: 2865, Mismatches: 340, Indels: 186
0.84 0.10 0.05
Matches are distributed among these distances:
884 1 0.00
885 161 0.06
887 1 0.00
888 2 0.00
889 180 0.06
890 4 0.00
891 3 0.00
892 6 0.00
893 2 0.00
898 2 0.00
899 2 0.00
901 1 0.00
902 49 0.02
903 273 0.10
904 293 0.10
905 133 0.05
906 418 0.15
907 559 0.20
908 351 0.12
909 6 0.00
910 6 0.00
911 172 0.06
912 5 0.00
913 2 0.00
914 108 0.04
915 3 0.00
916 85 0.03
917 26 0.01
919 2 0.00
920 2 0.00
922 1 0.00
925 2 0.00
927 1 0.00
928 2 0.00
929 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCATTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAA
TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGA
AAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
CACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGT
TCTCCGACGATGCTCCAATGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAG
CCCAGCATGTGCTGCCGCAACCCTCACTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAACC
AGCCAGAGGGGCAGGATGCGTAAGCCGAGGATCGGCTGGGTCCCCCTCTACGTGCTGCTGATCCT
ACTACCGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACAACGGGCGGGCGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
Found at i:14890894 original size:26 final size:27
Alignment explanation
Indices: 14890837--14890905 Score: 102
Period size: 27 Copynumber: 2.6 Consensus size: 27
14890827 ATTTTCATGA
* *
14890837 TTTTCAAAACTTTTTACGGTTCGAGAT
1 TTTTTAAAATTTTTTACGGTTCGAGAT
* *
14890864 TTTTTAAAATTTTTTGCTGTTCGAGAT
1 TTTTTAAAATTTTTTACGGTTCGAGAT
14890891 TTTTTAAAATTTTTT
1 TTTTTAAAATTTTTT
14890906 CAGAAGGAGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.25, C:0.09, G:0.12, T:0.55
Consensus pattern (27 bp):
TTTTTAAAATTTTTTACGGTTCGAGAT
Found at i:14891635 original size:26 final size:26
Alignment explanation
Indices: 14891606--14891658 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14891596 CCGATCCGAT
14891606 CTTAGACTAGGAATGAA-TTCCGTATG
1 CTTAGACTAGGAATGAACTT-CGTATG
*
14891632 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTAGGAATGAACTTCGTATG
14891658 C
1 C
14891659 GTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTTCGTATG
Found at i:14892539 original size:26 final size:26
Alignment explanation
Indices: 14892510--14892562 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14892500 CCGGTCCAAT
14892510 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14892536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14892562 C
1 C
14892563 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14893359 original size:899 final size:894
Alignment explanation
Indices: 14891478--14895443 Score: 5127
Period size: 878 Copynumber: 4.5 Consensus size: 894
14891468 CCCGATTGCA
* * * * * **
14891478 GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGTTACTCTGGCGATGGTGCCCCGGTGAAGAAA
1 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * * *
14891543 AATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCCACAACGCTCGGTCCGATCCGATCT
66 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC-CTC-GTCCGGTCC-ATCT
* *
14891608 TAGACTAGGAATGAATTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCGTAAGTCAACCCA-
128 TAGACT-GGAATGAA-TCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * * * * * * * * *
14891672 TAAAAGAAGCGTGTGGGCGTTCAGTCGGCCAGAGGGGTGGGATGCACAAGTCGAGGATCGGTCAG
190 GAAACG-AGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* * * *
14891737 GTCCCCTTCTGTGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCCT-GTCCGATCTTAGACTGA
254 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGT-CTGGTCCGATCTTAGACTGG
* * * *
14891801 GAATGAACTTTGTATGCCTAAGCCAACCGACAAAATGAGCGGGCGGGCGGGCAGTCAGGCACTAC
318 GAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGC-G---GGCACTAC
* *
14891866 GCCGGCCAGAGAGATGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
379 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
14891931 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCTTACAATGGTCCCTTAAGC
444 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
14891996 CTTCACGTGAAGTTTCATGGCAACACGACTCATTTTCTATTTTTCACAATTTTTGAAACTTTTTA
509 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTT-
* * *
14892061 G-GGTTCAAGATTTTTTAAAATTTTTTTGGAAGGAGTTATGACCCCAAACTTGGTAGACGTGATC
573 GCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
** *
14892125 CTTGTATTTTTTTTGGTGTGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
638 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
** * * * *
14892190 ACCATTTGAAAAAAGTGTTTCCATTTCAAACCCATTAATGGCAACTGGTAGCAAACCTGTAAAAT
703 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAAT
* **
14892255 CTCAAATGCTCTTTAAGTGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
768 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* *
14892320 GGCCAAGTACCAGCACCCATTGCACATCGTGTGCGCACACCCCCCCGACCCCCTCGATCGTC
833 GGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTC
* * *
14892382 GAAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGATGCTCTGGCGATGGTGCCCCGACGAAGAAA
1 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* *
14892447 AATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCATCGGTCCGGTCCAATCT
66 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC-TC-GTCCGGTCC-ATCT
*
14892512 TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCCAAGTCAACCCAC
128 TAGACT-GGAATGAA-TCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* *
14892577 GAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCCGTCGAG
190 GAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGG
* * * * *
14892642 TCCCCCTCTGCGTGCTGCCAATCCTACTGCCACAACCCTTGGTCTGGTCCAATCTTAGACTGGGA
255 TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGA
* *
14892707 ATGAACTCCGTATGCCTAAGCCAACCGACGACACGAGCGGGCGGACGGGCGGGCACTACGCCGGC
320 ATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGC
* *
14892772 CAGAGAGACGGGATGCGCAAGCCGTGAATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTAT
385 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * *
14892837 ATTTCTGCATGACAATACCATTTTTATGGCTTGTAAATTCATCCAATGGTCCCTTAAGCCTTCAC
450 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * ** ** *
14892902 ATGAAGTTTCATGGCAAAACGACTCGTTTTTTATTTTTCATGATTTTTGATCCCTTTTGCGGTTC
515 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTC
** * *
14892967 GGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCTAAACTTGGTAGACGTGATCCTTGTAT
580 AAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * *
14893032 TTTTCTTGGCAAGCA-AAAAAAATTCAGGTAAAAACTCGAAGTGTACAAAATTTTGTGACCATTT
645 TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * ** *
14893096 GAAAAAAGTGTCCCCATTT-TGTACACTTTAATGGCTACTGGCAAAAAACTTGTAAAATCTCAAA
710 GAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAA
* * *
14893160 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAAGAGGGATAGGGAGCCAATATAAGGGCCAA
774 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * * * *
14893225 GTACCAACACCCATTGCACATCATTTGTGCACACCACCCCGGCCCCCCCGATCGTC
839 GTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTC
* ** * *
14893281 GGAACCCCAATGCCACCGGTCAGGTTCTCCAACGATGATCCGGGGATGGTGCCCCGACGAAGAAA
1 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
** *
14893346 AATGCGGCACCAGCACATGCATGAGCCTAGCATGTGCTGCCGCAACC-C-T-CGG----TC----
66 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGTCCGGTCCATCTTAG
* * * *
14893400 -C------G-ATCCGAT-CTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATG
131 ACTGGAATGAATCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * *
14893456 AGCGTGCGGGCACTCCGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGTCCCCC
196 AGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
* * * * *
14893521 TCTGCGTGCTGTCGATCCTACTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAAC
261 TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* * * * *
14893586 TCTGTATGCCTAAGCCAATCGAGGAAATGAGCGGGTGGGCGGGCGGGGCGGGCACTACGCCAGCC
326 TCTGTATGCCTAAGCCAACCGACGAAACGAGC----GGGCGGAC-GGGCGGGCACTACGCCGGCC
* * *
14893651 AGAGAGACAGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTCATA
386 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
14893716 TTTCTGCATGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
451 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* ** * *
14893781 TGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCATGATTTTTTATACTTTTTGCGGTTCA
516 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCA
* * * * * *
14893846 GGATTTTTTAAAATTTTTTCGGAATGATTTTTAGCCCCAAACTTGGTAGGCCTGATCCTTGTATT
581 AGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
14893911 TTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
646 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
* * *
14893976 AAAAAAGTGTCCACATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTCAAATCTTAAATG
711 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATG
* *
14894041 CTTTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
776 CTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* *
14894106 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCTCGATCGTC
841 ACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTC
* * * **
14894160 GGAACCCCAATGCCGTCGGTTAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAA
1 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * * *
14894225 AATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACC-C-T----T-GATC----
66 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGTCCGGTCCATCTTAG
* * * *
14894279 -C------G-ATCCGAT-CTTGGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATG
131 ACTGGAATGAATCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
* * * * * **
14894335 AGTGTGCGGGCTCTCATCCGACCAGAGGGGCGGGATGGGCAAGCCGGGGATCGATCGGGTATCCC
196 AGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
* * * ** * * *
14894400 GCTGCATGCTGCCGATCCTGCTGCTGCAACCCTCGGTCTAATCTGATCTTATATTGGGAATGAAC
261 TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
* ** *
14894465 TCTGTATGCCTAAGCCAACTGACGAAACGAATGGGCGAGCAGGCGGGCGGGCACTACACCGGCCA
326 TCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-G-A--CGGGCGGGCACTACGCCGGCCA
* * *
14894530 AAGAGACGGGATGCGCAAGCCGTGGATCTATAGGGTGGTAGGTGGGTTCAGGCACATCTTCATAT
387 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
**
14894595 TTCT--ATGTTCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTG
452 TTCTGCATG--CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
14894658 GTGAAGTTTCATGGCAAGATGGCCCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTC
515 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTT-
* *
14894723 CAA-ATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTATA
579 CAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
* * *
14894787 TTTTTGTTGGCATGCACAAAACAATTCAACTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
644 TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
*
14894852 TGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAA
709 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAA
* *
14894917 TGCTCTTTAA-GGGGTGTGAGTTCTTAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAA
774 TGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* *
14894981 GTACCAGCACCCATTGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCC
839 GTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTC
* **
14895036 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGTGCCCCGACGAAGAAA
1 GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
* * * **
14895101 AATGCAGCACCGGCACATGCCCAAGCCCAGCATGTGCTGCCGCAACCCTCGATCTAGTCCGATCT
66 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTCG-TCCGGTCC-ATCT
*
14895166 TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCAC
128 TAGACT-GGAATGAA-TCC-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
* * * *
14895231 GAAACGAGCGTGCGGGTGCTCAACC-AGCCAGAGGGGCAGGATGCGCAAGCGGGGGATCGGTCGG
190 GAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGG
* ** *
14895295 GTCCCCCTCTACGTGCTGCCGATCCTGCTGCCATAACCCTCAGTCTGGTCCGATCTTAGACTGGG
254 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGG
* * * *
14895360 AATAAACT-TCGTATGCCTAAGCCAACTGAC-AAA--A-C--G-AG-CGGGTGGGCACTACGCCG
319 AATGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCG
14895416 GCCAGAGAGACGGGATGCGCAAGCCGTG
383 GCCAGAGAGACGGGATGCGCAAGCCGTG
14895444 TGTCATGAGC
Statistics
Matches: 2693, Mismatches: 319, Indels: 114
0.86 0.10 0.04
Matches are distributed among these distances:
873 188 0.07
874 2 0.00
875 8 0.00
876 126 0.05
877 94 0.03
878 641 0.24
879 500 0.19
880 2 0.00
884 2 0.00
886 3 0.00
889 2 0.00
890 43 0.02
891 1 0.00
894 4 0.00
895 1 0.00
896 1 0.00
897 1 0.00
898 1 0.00
899 310 0.12
900 263 0.10
901 7 0.00
902 169 0.06
903 4 0.00
904 316 0.12
905 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (894 bp):
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTCGTCCGGTCCATCTTAG
ACTGGAATGAATCCTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGTCGGGTCCCCC
TCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAAC
TCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGGCGGGCACTACGCCGGCCAGAGA
GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAAGATT
TTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTT
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATTGCACATCATGTGCGCACACCCCCCCGACCCCCCCGATCGTC
Found at i:14895193 original size:26 final size:26
Alignment explanation
Indices: 14895164--14895216 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14895154 CTAGTCCGAT
*
14895164 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14895190 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
14895216 C
1 C
14895217 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14904018 original size:26 final size:26
Alignment explanation
Indices: 14903979--14904028 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
14903969 CTGGTCCAAT
*
14903979 CTTAGACTGGGAATGAACTCCGTACG
1 CTTAGACTGAGAATGAACTCCGTACG
*
14904005 CTTAGACTGAGAATGAACTTCGTA
1 CTTAGACTGAGAATGAACTCCGTA
14904029 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTACG
Found at i:14905811 original size:26 final size:26
Alignment explanation
Indices: 14905775--14905827 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14905765 TCAATCTGAT
14905775 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14905801 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14905827 C
1 C
14905828 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14907466 original size:893 final size:894
Alignment explanation
Indices: 14903116--14909722 Score: 8020
Period size: 901 Copynumber: 7.4 Consensus size: 894
14903106 CCCAGCATGT
* * * *
14903116 ACTCCGTATGCCTAAGTTAACCCATGAAACGAGCGTGCGGGCTCTCAGCCTGCCAGAGGGGCGGG
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * *
14903181 ATGCGCAAGCCGGGGATCGGCCGGGTCCCCCT-T--GTGTTCTGCCGATCTTGCTACTACAACCC
66 ATGCGCAAG-CGAGGATCAGTCGGGTCCCCCTCTACATG-T-TGCCGATCCTGCTACCACAACCC
* * * *
14903243 TC-GATCTGGTCTGATCATAGACTGGGAATGGACTCCGTATGCCTAAGCCAACCGATGAAACGAG
128 TCAG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG
* * *
14903307 CGGA----CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCAATAGGGTGGT
192 CGGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
14903368 AGGTGGGTTTAGCCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCA
257 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* * * * *
14903433 TACAATGGTCTCTTAAGCCTTAATGTGAAGTTTAATGGCCAA-ATGACTCGTTTTCTATTTTTCA
322 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG-CAAGACGACTCGTTTTCTATTTTTCA
* ** * * * * * **
14903497 CGATTTTTGAAACTTTTTGTGATTCAGGTTTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCATA
386 TGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * * * * *
14903562 AACTTCGTAGACATGATCCTTCTATTTTTTTTGGCATGCAAAAAAAAAATTCAGCAAAAAAATCG
451 AACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCA
*
14903627 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
515 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
14903692 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAGGGGGTGTGA-TATCTCGAGGTTTGATGAG
580 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT-TCTCGAGGTTTGATGAG
* *
14903756 GGATAGGGGGCCAATATAAGGGCCAAGTACCAACACCCATCGCACATCATGTGCGCAAACCCCGC
644 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-C
*
14903821 CCGGCCCCCCTCGATCGCCAGAACCCCAATGCCATCGGTCAGGTTCTCCGGCGATGCTCCGACGA
708 CCGGCCCCCC-CGATCGCC-GAACCCCAATGCCGTCGGTCAGG-T-T-------T--TCCGACGA
* * ** * * *
14903886 TGCTCCGACAATGGTGGCCCGGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCCTGT
760 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGT
* * * *
14903951 GCTGCCACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGAG
825 GCTGCCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
14904016 AATGA
890 AATGA
* * * *
14904021 ACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGAGGGCGCTCAACCGACCAGAGGGGCGGG
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * * **
14904086 ATGCGCAAGCAAGGGATCGGTCGGTTCCCCCTCTACGT-TCTGTCGATCATGCTACCGTAACCCT
66 ATGCGCAAGCGA-GGATCAGTCGGGTCCCCCTCTACATGT-TGCCGATCCTGCTACCACAACCCT
* * *
14904150 CAGTCCAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCA
129 CAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-
* * ** **
14904215 GG-TGGGAGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGTTGTGGATCGATAGGGTGGTA
193 GGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
14904279 GGTGGGTTTAGGTACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCGT
258 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* *
14904344 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTGTCTATTTTTCATG
323 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * *
14904409 ATTTTCAAAACTTTCTACGGTTCGGGATTTTTTAAAATTTTTTCTGAAGGAGTTTTGGCCCCAAA
388 ATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * *
14904474 CTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAATAAAATTCAGCCAAAAACTCGAAG
453 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
*
14904539 TGTACAAGATTTTGTGACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
518 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
14904604 AGCAAACCTGTAAAATTTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGAT
583 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* * * *
14904669 AGGGGACCAATATAAGGGCCTAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCGAC
648 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * * * * *
14904734 CCCCTCGATC-CTCGAAACCCCAATGTCG-CTGGTTAGGTTCTCTGACGATGCTCCGGCGATGGT
713 CCCCCCGATCGC-CG-AACCCCAATGCCGTC-GGTCAGGTTTTCCGACGATGCTCCGACGATGGT
* * * ** ** *
14904797 GCCCCGACGAAGAAAAATACGGCACCAGCACATGCTCGAGCCGAACATGCACTGCTGCAACCCTT
775 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTC
* * * *
14904862 GGTCCGGTCCAATCTTAGACTCGGAATGAACTCCATATGCTTGGACTGGGAATGA
840 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
14904917 ACTCTGTATGCCTAAGTCAACCCACGAAATGAGCATGCGGGCGCTCAACCGGCCAGAGGGGAGGG
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * * *
14904982 ATGCACAAGCCAGGGATCAG-CTGGGTCCCCCTCCACATGCTGTCGATCCTGTTGCTC-CAACCC
66 ATGCGCAAGCGA-GGATCAGTC-GGGTCCCCCTCTACATGTTGCCGATCCTGCTAC-CACAACCC
* *** *
14905045 TCGGTCTTTTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGC
128 TCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC
* * *
14905110 GGGCGAGCGGGTGGGCGGGCGCTAC-ACAGGCCAGAGAGACGGGATGCGCAGGCCGTGGATCGAT
193 --G-GA-C----GGGCGGGCACTACGCCA-GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
*
14905174 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTAAGGCTTG
249 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTG
* *
14905239 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT-AT-GCAAGACGACTCATTTTTTA
314 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** ** *
14905302 TTTTTCATGATTTTTGAAA-TGTTTTGTAGTTCGGGATTTTTTAAAATTTTTTCGGAAGGTGTTT
379 TTTTTCATGATTTTCAAAACT-TTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* *
14905366 TAGCCCCAAAATTGGTAGACGTGATCCTTGTA-TTTTTTTGGCATGCGA-AAAAAAATTCAGCTA
443 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGCTA
** **
14905429 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAGCAAGTGTCCCCATTTTGGACACTTTAA
507 AAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
14905494 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
572 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
*
14905559 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAC
637 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * *
14905624 A-CCCCCCAGCCCCCCCGATCGTCGGAACCCCAATGTCGCCGGTCAGGTTCTT-CGACGATGCTC
702 ACCCCCCCGGCCCCCCCGATCG-CCGAACCCCAATGCCGTCGGTCAGGTT-TTCCGACGATGCTC
* * * * * *
14905687 CGATGATGGAGCCCCAACGAAGAAAAATGTGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGA
765 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGC
* ** *
14905752 CACAACCCTTC-GTTCAATCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
830 CACAACCC-TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
14905816 A
894 A
* * * ** *** * **
14905817 ACTCCGTATGCCTAAGTCAACTCACGAAACGAGCGTGCGGACGGTCAG--GTTCTCCGGTGATGG
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* ** * * ** * * ** * * *
14905880 -TGCCCTGGTGAAGAAAAAT-GTGG-CACCAGC-ACATGCTCAAGCCCAGCAT-GTGCTACCGCA
66 ATGCGCAAGCGAGGATCAGTCG-GGTCCCCCTCTACATG-T--TG-CC-G-ATCCTGCTACCACA
* * * * *
14905940 ACCCTCAGTCTGATCAGATCTTAGACTGGAAATGAACCCCGTATGCCTAAGCCAACCGACGAACC
124 ACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-A--
* * * * **
14906005 GAACGGGTGGGCGGGCGGGCGGGTACTACGTCAGCCAGAGAGAC-GGATAAGCAAGCCGTGGATC
186 -AAC----GAGCGGACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
* * * *
14906069 GATAGGGTGGTAGGTGGGTTTACGCGCATCTTCATATTTCTGCGTTCCAATGCCATTTTTAAGGC
246 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
*
14906134 TTGTAAATTCATACAATGGTCCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTT
311 TTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
* * * *
14906199 TCTATTTTTCATGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGAAA
375 TCTATTTTTCATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAG
* * * *
14906264 TTTTGGCCCCGAACTTGGTAGACGTGATCCTTGCATTTTTGTTGGCTTGCACAAAAAAA-TCAGC
440 TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGC
* * *
14906328 TAAAAACTCAAAGTGTACAAGATTTTATGACCATTCGAAAAAAGTGTCCCCATTTCAAACACTTT
505 TAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT
* *
14906393 AATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGAGTTCTCGAGG
570 AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
* * *
14906458 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCAGCCATTGCACTTCATGTGCGC
635 TTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * *
14906523 ATA-CCCCCCGGCCCCCCCGATCACCGAAACCCTAATGCCGTCGGTCAGGTTTTCCAACGATGCT
700 ACACCCCCCCGGCCCCCCCGATCGCCG-AACCCCAATGCCGTCGGTCAGGTTTTCCGACGATGCT
* ** * * *
14906587 CCGACGATGGTGCCCCGGCGAAGAAAAATGCGGTGCTAGCTCATGCTCAAGCCCAGCATGTGCTG
764 CCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTG
* * * * * *
14906652 CCACAACCCTCGATCTGGTCCGATCCTAGATTGGGAATGAACTCCATATGCTTAGACTGTGAATG
829 CCACAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATG
14906717 A
894 A
* * * * * * * *
14906718 ACTCCGTACGCCTAAGTCAACCCATGAAATGAGCGTGTGGGCACTTAGCCGGCCAGAGGGGTGAG
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * * *
14906783 ATGCGTATGTCGAGGATTAGTCGGGTCCCCCTCTACGTGTTACCGATCCTGTTACCGCAACCCTC
66 ATGCGCAAG-CGAGGATCAGTCGGGTCCCCCTCTACATGTTGCCGATCCTGCTACCACAACCCTC
* ** * * *
14906848 AGCCCGGTCCAATCTTAGACTGGGAATAAATTCCGTATGCCTAAGCCAACCGACGAAACG-GCCT
130 AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAG-CG
* * * * *
14906912 GACGGGCAGGCACTACGCCAGCCAGAGAGACAGGATACGCAAGCCGTGGATCAATAGGGTCGTAG
194 GACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
14906977 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
259 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
14907042 GAATGGTCCCTTAATCCTTCACCTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGA
324 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * *
14907107 TTTTCAAAAATTTTTGCAGTTTGGGATTTTTTAAAA-TTTTTCGGAAGGATTTTTGACCCCAAAC
389 TTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * * * *
14907171 CTGCTAGGCGTGATCCTTGTATTTTTTTTGGTATGCAAAAAAAAATTTAGCTAAAAACTCGAAGT
454 TTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGT
*
14907236 GTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTTCAGACAC-TTAATGGCTACTGGCA
519 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
14907300 GCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGAGTGAGTTCTTC-AGGTTTGATGAGGGAT
584 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGTTTGATGAGGGAT
* * *
14907364 AGGGGACCAATATAAGGGCCAAGTACCAGCACCCATCACAAATCATGTGCGCACACCCCCCCGG-
648 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * * *
14907428 CCCCCCGATCGCCAGAACCCCAATGCCGTTGATCAGGTTCTCCGACGACGCTCCGACGATGGTGC
713 CCCCCCGATCGCC-GAACCCCAATGCCGTCGGTCAGGTTTTCCGACGATGCTCCGACGATGGTGC
* * ** *
14907493 CCCGACGAAGAAAAATGCGGCACCAGCACATGC-CGGAGCCTAGCATGTGCTGTCGTAACTCTCG
777 CCCGACGAAGAAAAATGCGGCACCAGCACATGCTC-GAGCCCAGCATGTGCTGCCACAACCCTCG
* *
14907557 GTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
841 GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * *
14907611 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAGCTGGCCAGAGGGGCGGG
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * *** * * *
14907676 ATGCGCAAGCTGAGGATCGGCCGGGTCCCCCTCTGCATACAGTCAATCCTACTACCACAACCCTC
66 ATGCGCAAGC-GAGGATCAGTCGGGTCCCCCTCTACATGTTGCCGATCCTGCTACCACAACCCTC
* * * ** * *
14907741 AGTCCAGTCTGATCTTAGACTGAGAATGAACTCTGTATGCCTAAGCCAACTAATGAAACGAACGG
130 AGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * *
14907806 GCGGGCGGGCACTACGCC-GACTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAG
195 ACGGGCGGGCACTACGCCAG-CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
** * * *
14907870 GCAGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCTATTTTTATGGCTTTTAAATTCATA
259 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
14907935 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
324 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
** * * * *
14908000 TTTTTGAAACCTTTTGC-GATCTGAGATTTTTTAAAATTTTCTCGGAAGGAGTTTTGGCCCCAAA
389 TTTTCAAAACTTTTTGCGGTTC-GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
*
14908064 -TGTGGTAGATGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
453 CT-TGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAA
* *
14908128 AATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTG
516 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
14908193 GCAGCAAACCTGTAAAATCTCAAATGCCCTTTCAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
581 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
14908258 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCATATCATGTGCGCACA-ACCCCCG
646 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG
* * *
14908322 GCCCCCCCGATCGTCGAAACCCCAATGCCGTCGGTCAGGTTCT-C--CG--G-T-----GATGTT
711 GCCCCCCCGATCGCCG-AACCCCAATGCCGTCGGTCAGGTTTTCCGACGATGCTCCGACGATGGT
* ** * * * *
14908376 GCCCTGGTGAAGAAAAATACGGCACCAACACATGCTCGAGCCCAGCATATGCTGCCACAACCCTT
775 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTC
* *
14908441 GGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGA
840 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* ** * * *
14908496 ACTCCGTACGCCTAAGTCAACCCATAAAACTAGCGTGCGGGCGCTCAACCGGCAAGA-GGGCGGG
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * *
14908560 ATGCGCAAGCTGGGGATCGGTCAGGTCCCCCTCTGCGTGTTGCCGATCCTACTACCACAACCCTC
66 ATGCGCAAGC-GAGGATCAGTCGGGTCCCCCTCTACATGTTGCCGATCCTGCTACCACAACCCTC
* * ** * * *
14908625 GGACCGGTCCAATCTT-GCACTGGGAATGAACTCTGTATGCCTAAGCCAACTGATG-AA--A-C-
130 AGTCCGGTCTGATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG
* *
14908684 GA-------G--CT--G---GCCAGAGAGACAGGATGCGCAAGCAGTGGATCGATAGGGTGGTAG
194 GACGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
14908735 GTGGGTTTAGTCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
259 GTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
*
14908800 CAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
324 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGA
* * * * *
14908865 -TTTCTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTGTTCGGAAGGATTTTTGGCCCCAAA
389 TTTTC-AAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* ** *
14908929 CATGGTAGGTGTGATCCTTGTATTTTTTTTGGCATGCACAAAAGAATTCAGCTAAAAACTCAAAG
453 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
14908994 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
518 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
14909059 AGCAAACCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTTTCGAGGTTTGATGAGGGAT
583 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* ** *
14909124 AGGGGGCCAATATAAGGGCCAAGTGCCAGCACCCATCGCACATCATGTGCGCACA-CCCTTCGGT
648 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* * * * *
14909188 CCCCCCGATCGCCGGAACCCCAATGCTGTCGGTCAGCTTCTT-CGACGAAGCTTCGACGAGGGTG
713 CCCCCCGATCGCC-GAACCCCAATGCCGTCGGTCAGGTT-TTCCGACGATGCTCCGACGATGGTG
* * * * ** *
14909252 CCCCGACGAAGAAAAAAGTGGCACCAGCACATG-TCGAAGCCCAACATGTGCTACCGTAACCCTT
776 CCCCGACGAAGAAAAATGCGGCACCAGCACATGCTCG-AGCCCAGCATGTGCTGCCACAACCCTC
* *
14909316 GGTCCTGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
840 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* *
14909371 ACTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGTTCAGCCGGCCAGAGGGGCGGG
1 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * * *
14909436 ATGCGCAAGCCG-GGATC-GGCTGGGTCCCCCTCTGCATGCTGCCGATCCTACTGCCATAACCCT
66 ATGCGCAAG-CGAGGATCAGTC-GGGTCCCCCTCTACATGTTGCCGATCCTGCTACCACAACCCT
** * ** * * * *
14909499 TGGTCCGATCTGATCTTAGACTAAGAGTGAACTCTGTATGCCTAAGCCAATCGATGAAACGAGCA
129 CAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-
* * *
14909564 GG-CGGGCGGGCGGGTACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGT
193 GGACGGGCGGGC----ACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
** *
14909628 GGTAGGCAGGTTTAGGCACATCTTCATATTTCTGTGTG-CAATGCCATTTTTATGGCTTGTAAAT
254 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAAT
14909692 TCATACAATGGTCCCTTAAGCCTTCACGTGA
319 TCATACAATGGTCCCTTAAGCCTTCACGTGA
14909723 TCCTTTTATT
Statistics
Matches: 4925, Mismatches: 644, Indels: 274
0.84 0.11 0.05
Matches are distributed among these distances:
864 263 0.05
865 233 0.05
866 3 0.00
867 2 0.00
868 1 0.00
869 1 0.00
870 3 0.00
872 1 0.00
874 5 0.00
875 239 0.05
876 20 0.00
877 1 0.00
878 1 0.00
879 2 0.00
880 1 0.00
881 2 0.00
883 3 0.00
884 109 0.02
885 155 0.03
886 1 0.00
887 1 0.00
890 1 0.00
891 1 0.00
892 5 0.00
893 692 0.14
894 235 0.05
895 199 0.04
896 450 0.09
897 65 0.01
898 182 0.04
899 107 0.02
900 206 0.04
901 702 0.14
902 184 0.04
903 14 0.00
904 151 0.03
905 93 0.02
906 87 0.02
907 33 0.01
908 11 0.00
909 204 0.04
910 256 0.05
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (894 bp):
ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
ATGCGCAAGCGAGGATCAGTCGGGTCCCCCTCTACATGTTGCCGATCCTGCTACCACAACCCTCA
GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGA
CGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
GGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
TTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
CCCGATCGCCGAACCCCAATGCCGTCGGTCAGGTTTTCCGACGATGCTCCGACGATGGTGCCCCG
ACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCG
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
Found at i:14907605 original size:26 final size:26
Alignment explanation
Indices: 14907569--14907621 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14907559 CCAGTTCGAT
14907569 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14907595 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14907621 C
1 C
14907622 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14908490 original size:26 final size:26
Alignment explanation
Indices: 14908454--14908503 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14908444 CCGGTCTGAT
*
14908454 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14908480 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14908504 CGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14909365 original size:26 final size:26
Alignment explanation
Indices: 14909329--14909381 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14909319 CCTGTCCGAT
14909329 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
14909355 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
14909381 C
1 C
14909382 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:14911466 original size:904 final size:898
Alignment explanation
Indices: 14909717--14912582 Score: 3743
Period size: 904 Copynumber: 3.2 Consensus size: 898
14909707 TTAAGCCTTC
* * *
14909717 ACGTGATCCTTTTATTTTTGTTGGCTTGCACAAAAAAATTCATCTAAAAACTCGAAGTGTACAAG
1 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
14909782 ATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTACTGGCAGCAAACC
66 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC
* * * *
14909847 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTTGAGGTTTGATTAGAGATAGGGGGCC
131 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACC
* * **
14909912 AATATAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGTGCACACCCCCCCGGCCCCCCTTT
196 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCCGGCCCCCCAAT
* * * * * * ** *
14909977 CGCCAGAACCCCAATGCCGCCGGTCAGGTTGTCTGGCGATGCTTCGGTGATGGTACCCCGACGAA
260 CGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTTGCCCGATGAA
* * * * ** * * *
14910042 GAAAAATACAGCACCAGCACCTGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGATCCGGTCGG
325 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGATCCG
* *
14910107 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTACGCCTAAGTCAAC
390 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
14910172 CCACGAAATGAACGTGTGGGCGCTCAACCGACCAGAGGGGCAGGCTGTGCAAGTCGGGGATCGGT
455 CCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGTGCAAGTCGGGGATCGGT
* * * * ** * *
14910237 CGGGTCCCCCTCTGT-GTGCTGTCGATCCTGCTACTACAACCCTCGGCCCGGTCCAATGTTGGAC
520 CGGGTCCCCCTCT-TCGTGCTATCGATCCTGCTCCGA-AACCCTC-GTCCTATCCAATCTTAGAC
* * * * * * *
14910301 TGGGAATGAACTCCGTATGCGTAAGCCAACCGACGAAACGAGCTGGCTAGTG-AGCGGGCGGGCA
582 TGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAG-TGG-GAGGGCGGCAGGCGGGCA
* *
14910365 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGCATCGATAGGGTGGTATGTGGGTTTAGGC
645 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * **
14910430 ACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCACGTAAATTCATACAATGGTCCCTT
710 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
14910495 ACGCCTTCACATGAAGATTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTCTAAACTT
775 AAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT-TAAACTT
* * *
14910560 TTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAATGATTTTTTGG-CCCAAACTTGGTAG
839 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGGTAG
* *
14910620 ACCTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
1 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
14910685 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
66 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC
* *
14910750 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGACC
131 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACC
*
14910815 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCTCCGGCCCCCCCGA
196 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCC-CCGG-CCCCCCAA
* * *
14910880 TCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCAGCGATGGTTGCCTGGTGA
259 TCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTTGCCCGATGA
* ** * *
14910945 AGAAAAATGTGGTGCCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTAATCT
324 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGATCC
* * * *
14911010 GACCTTAGACTGGGAATGAACTCCGTGTGGTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
389 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
14911075 CCCACGAAACGAGCGTGCGGGCGCTTAGCCGACCAGAGGGGCGGGATGTGCAAGCCGGGGATCGG
454 CCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGTGCAAGTCGGGGATCGG
* * * * *
14911140 CCGGGTCCCCCTCTTCGTGCTATCAATCCTACTGCCGAAACCATCAGTGCTATCCAATCTTAGAC
519 TCGGGTCCCCCTCTTCGTGCTATCGATCCTGCT-CCGAAACCCTC-GTCCTATCCAATCTTAGAC
* *
14911205 TAGGAATGAACTCCATATGCCTAAGCCAACCAATGAAACGAGTGGGAGGGCGGACAGGCGGGCAC
582 TGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGTGGGAGGGCGG-CAGGCGGGCAC
* *** * * *
14911270 TACGTCGGCCAGAGAGATAAGATGTGCAAGCCATGGATCGATAGGGTGGTAGGTAGGTTTAGGTA
646 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
14911335 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
711 CATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * *
14911400 AGCATTCACTTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTT
776 AGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT-AAACTTT
* *
14911465 TTGTGTTTC-AGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
840 TTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
14911524 ACGTGATCCTTGTATTTTTGTTGGCATG--------AA---AG--------T----GTCT--AAG
1 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
14911564 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACC
66 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC
*
14911629 TATAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GGGAGC
131 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGA-C
* * * *
14911693 CAATATAAGAGCCAAGTACCAGCAACCATCGCACATCATGTGCGCACACCCCCCGGCCCCCTAAT
195 CAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCAAT
** * * *
14911758 TACCGGAACCCCAATGCCGCTAGTTAGGTTCTCCGACGATGCTCCGGCGATGG-TGCCCCGATGA
260 CGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTTG-CCCGATGA
* * * * *
14911822 AGAAAAATGCGGCACCAGCTCATTCTCGAGCCCAGCATGTGCTGCCGTAACCTTCGGTCTGATCC
324 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGATCC
* * * **
14911887 GATCTTAGAATGGGAATGAACTCTGTATGCTTAGACTGGGAATCAACTCCGTATGATTAAGTCAA
389 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
14911952 CCAACAAAACAAGCGTGCGGGAGCTCAATCGGCCAGAGGGGCGGGATG-GTTAAGTCGGGGAT-A
454 CCCACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGTG-CAAGTCGGGGATCG
* * * * * * * ***
14912015 ATCGGGTCCTCTTCTGCATGCTATCGATCCTGCTACCGCAACCCTCGATTCTGATTTGATCTTAG
518 GTCGGGTCCCCCTCTTCGTGCTATCGATCCTGCT-CCGAAACCCTCG-TCCT-ATCCAATCTTAG
* *
14912080 ACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAG-CGG-GCG-GGCAGGCGGGCA
580 ACTGGGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGTGGGAGGGCGGCAGGCGGGCA
* * *
14912142 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTCGTAGGTGGGTTTAGGC
645 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGC
*
14912207 ACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
710 ACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * *
14912272 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATGATTTTTAAAATAT
775 AAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAACT-T
* * *
14912337 TTTACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
839 TTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * * * * *
14912397 ATGTGATGCTTGTATTTTTCTTGGCATGCACCAAAAAATTCAGTTAAAAAGTCGAAATGTACAAC
1 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
14912462 ATTTTGTGACTATTTGAAAAAAGTGTCTCCATTTCAAACACTTTAATGCCTACTGGCAGCAAACC
66 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC
*
14912527 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
131 TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
14912583 CCCCAATGCC
Statistics
Matches: 1716, Mismatches: 206, Indels: 87
0.85 0.10 0.04
Matches are distributed among these distances:
872 4 0.00
873 263 0.15
874 2 0.00
875 3 0.00
876 43 0.03
877 272 0.16
878 8 0.00
879 172 0.10
881 5 0.00
884 2 0.00
885 1 0.00
892 1 0.00
893 2 0.00
896 4 0.00
898 116 0.07
902 7 0.00
903 245 0.14
904 564 0.33
905 2 0.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (898 bp):
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGACC
AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCAATC
GCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTTGCCCGATGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCGATCTGATCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAACCGACCAGAGGGGCGGGATGTGCAAGTCGGGGATCGGTC
GGGTCCCCCTCTTCGTGCTATCGATCCTGCTCCGAAACCCTCGTCCTATCCAATCTTAGACTGGG
AATGAACTCCATATGCCTAAGCCAACCGATGAAACGAGTGGGAGGGCGGCAGGCGGGCACTACGC
CGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAACTTTTTGCGG
TTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
Found at i:14911919 original size:26 final size:26
Alignment explanation
Indices: 14911890--14911941 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
14911880 CTGATCCGAT
* *
14911890 CTTAGAATGGGAATGAACTCTGTATG
1 CTTAGAATGGGAATCAACTCCGTATG
*
14911916 CTTAGACTGGGAATCAACTCCGTATG
1 CTTAGAATGGGAATCAACTCCGTATG
14911942 ATTAAGTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGAATGGGAATCAACTCCGTATG
Found at i:14912734 original size:26 final size:26
Alignment explanation
Indices: 14912705--14912755 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
14912695 CCGGTCTGAT
14912705 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14912731 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGGGAATGAACTCCGTAT
14912756 CCCTAAGTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.20, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14914198 original size:26 final size:26
Alignment explanation
Indices: 14914169--14914218 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
14914159 CTGGTCCGAT
*
14914169 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14914195 CTTAGACAGGGAATGAACTCCGTA
1 CTTAGACAGGGAATGAACTCCGTA
14914219 AGCCTAAGTT
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14915128 original size:39 final size:39
Alignment explanation
Indices: 14915069--14915143 Score: 123
Period size: 39 Copynumber: 1.9 Consensus size: 39
14915059 GGTCTAATCT
* *
14915069 TAGACTGGGAATGAACTCCGTATGCCTGAGCCAACCGAC
1 TAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
*
14915108 TAGAATGGGAATGAACTCCGTATGCCTAAGTCAACC
1 TAGAATGGGAATGAACTCCGTATGCCTAAGCCAACC
14915144 CACAAAATGA
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 33 1.00
ACGTcount: A:0.31, C:0.25, G:0.24, T:0.20
Consensus pattern (39 bp):
TAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
Found at i:14915616 original size:911 final size:898
Alignment explanation
Indices: 14913301--14916224 Score: 3568
Period size: 900 Copynumber: 3.2 Consensus size: 898
14913291 CATTTGAACT
* ** * *
14913301 TAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTG
1 TAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCG
* * * ** * ** *
14913366 GCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGCCGGGTCCCCTTCTGGGTGCTGCCGATCCTA
66 GCCAGA-GGGCTGGATGCGCAAGCTGGGGATCGAACAGGTCCCC-TCTGCATGCTGCCGATCCTG
* * * * * *
14913431 CTGCTGCAACCCTCGGTCCGGTCCAATCTTACACTAGGAATGAACTCCGTATGCCTAAGCCGACC
129 CTGCTGCAACCCTTGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
*
14913496 GATGAAACGAGCGGGCGGGCGGGC-A-CTAC-GCCGGCCAGAGAGACGGGATGCGCAAGCTGTGG
194 GATGAAACGAGCGGACGGGCGGGCGAGC-ACTGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGG
14913558 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
258 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
* * *
14913623 GGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAAAGGACTCGT
323 GGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
* * *
14913688 TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAAATGTTTT-AGAAG
388 TTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCAGAAG
* *
14913752 GAGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG-ATGGACAAAAAAATTC
452 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTC
* *
14913816 AGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACAC
517 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
*
14913881 TTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCACTTTAAGGGGGGTGTGAGTTCTC
582 -TTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTC
* * *
14913946 GAGGTATGATAAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCATGT
645 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * *
14914011 GCGCACACCCCCCCGGCCCCCCCGATCAACGAAACCCCAATGTCGTCGGTCAGGTTCTCTGGCGA
710 GCGCACAACCCCCCGG-CCCCCCGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCTAGCGA
* * * *
14914076 TGCTTCGTCGATAGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGT
774 TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAACATGT
* * *
14914141 GCTGCTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
839 GCTGCTGCAA-CCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTAAGAC
* * * * **
14914202 ----A-GGGAATGAACTCCGTAAGCCTAAGTTAACCCACAAAACGAACGTGCAGGCGCTCAATCG
1 TAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCG
* * * * * * *
14914262 GCTAGAGGGGTGGGATACGTACG-TCGGGGATC-AACCGAGTCCCCCTCAGCATGCTGCCGATCC
66 GCCAGAGGGCT-GGATGCGCAAGCT-GGGGATCGAACAG-GT-CCCCTCTGCATGCTGCCGATCC
** * * * *
14914325 TGCTGCCCCAACCC-TCAGTTCGGT-TCAATCTTAGACTGGGAATCAACTCCGTACGCCTAAGCC
127 TGCTGCTGCAACCCTTGA-TCCGGTCT-AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
14914388 AACCGACGAAACAAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGC
190 AACCGATGAAACGAGCGGACGGGCGGGCGAGCACT--GCCGGCCAGAGAGACGGGATGCGCAAGC
* * * *
14914453 CGTGGATCGATAGGGTGGTACGTGGGTTTAGGGACATCTTCATATTTTTGCATGCCAATGCCATT
253 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * * * *
14914518 TTTATGACTTGTCAATTCAAATAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCGAGATGA
318 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
* * * * * *
14914583 CTCATTTTCTATTATTCATGATTTTCGAAACTTTTTACGGTTCTAGATTTTTTAAAATTTTGTCG
383 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCA
* * * *
14914648 GAAGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTATATTTTT-TTGACATGCACAAAAAA
448 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * * *
14914712 ATTCAGGTAAAAACTCGATGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAG
513 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
14914777 ACACTGTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
578 ACACT-TAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
14914842 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGTACATCA
642 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
14914907 TGTGCGCACAACCCCCCGGCCCCTCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCTAGC
707 TGTGCGCACAACCCCCCGGCCCCCCGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCTAGC
* * * *
14914972 GATGCTCCGGCGATGGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAACAT
772 GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAACAT
* *
14915037 GTGCTGCTGCAACCTGTGGTTTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTGAGCCA
837 GTGCTGCTGCAACCT-CGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATG-CT-----A
14915102 ACCGAC
895 A--GAC
* *
14915108 TAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGCCG
1 TAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
14915173 ACCAGAGGCGCTGGATGCGCAAGCTGAGGATCGATCAGGTCCCTCTCTGCATGCTACCGATCATG
66 GCCAGAGG-GCTGGATGCGCAAGCTGGGGATCGAACAGGTCCC-CTCTGCATGCTGCCGATCCTG
* *
14915238 CTGCTGCAACCCTTGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
129 CTGCTGCAACCCTTGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
14915303 AATGAAACGAGCAGACGGGCGGGCGAGCACTGCACTGGCTAGAGAGACGGGACGCGCAAGCTGTG
194 GATGAAACGAGCGGACGGGCGGGCGAGCACTGC-C-GGCCAGAGAGACGGGATGCGCAAGCTGTG
* ** *
14915368 GATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTG
257 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA
* * *
14915433 TGGCTTGTAAATTCATACAATGGTCCCTTAAG-CTTCACGTGAAGTTTCATGGCAAGATGATTGG
322 TGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
* * *
14915497 TTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAG
387 TTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAG
** *
14915562 GAGTTTTGGCAACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAAAT
452 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATT
14915627 CAGCTAAAAA-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACA
516 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * *
14915690 CTTATTGGCTATTGGCAAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATTCTC
581 CTTAATGGCTACTGGC-AGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
* * *
14915755 GATGTTTGATGAAGGGATAGGGGGCCAATATAAAGGGCCAAGTACGCAGCCACGCGATCGCACAG
645 GAGGTTTGATG-AGGGATAGGGGGCCAATAT-AAGGGCCAAGTAC-CAG-CAC-CCATCGCACAT
* * * *
14915820 CATGTGCGCAC-ACCCCCCGGCCCCCCGATCGCCGGATCCCCCAATGCCGTCGGTCAGTGATCCC
705 CATGTGCGCACAACCCCCCGGCCCCCCGATCGACGGA-ACCCCAATGCCGTCGGTCAG-GTTCTC
* * * * * * *
14915884 TAGGCGATGCACTTGACGATGGTAGCCCCGATGAAGGAAAAATGCCATACCTGCACATGCTCGAG
768 TA-GCGATGCTC-CGACGATGGT-GCCCCGACGAA-GAAAAATGCGACACCAGCACATGCCCGAG
* *
14915949 -CCAAGCATGTGCCTGCT-AAACACTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTACCGT-
829 CCCAA-CATGTG-CTGCTGCAAC-CTCGGTTTGGTCTGATCTTAGACTGGGAATGAACT-CCGTA
*
14916011 TG----G-T
890 TGCTAAGAC
* * * *
14916015 TAGACTGGGAATGAACTCTGTATGCCTAAGTCCAAACCCCACGAAACGAGCGTGCAGGCGCTCAG
1 TAGAATGGGAATGAACTCCGTATGCCTAAGT-C-AA-CCCACAAAACGAGCGTGCGGGCGCTCAG
** * * * * ***
14916080 CCGGTGAAAGTGG-TGGGATGCGCAAGCCGGGGATCGATCGGGTCCTCCTCTATGTGCTGCCGAT
63 CCGGCCAGAG-GGCT-GGATGCGCAAGCTGGGGATCGAACAGGTCC-CCTCTGCATGCTGCCGAT
* * * * * * *
14916144 CCTACTG-TCACAACCC-TCAGTCCAGTTTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAG
125 CCTGCTGCT-GCAACCCTTGA-TCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
14916207 CCAATCGACGAAACGAGC
188 CCAACCGATGAAACGAGC
14916225 AAGCCGTGGA
Statistics
Matches: 1723, Mismatches: 238, Indels: 115
0.83 0.11 0.06
Matches are distributed among these distances:
895 5 0.00
896 158 0.09
897 9 0.01
898 145 0.08
899 105 0.06
900 352 0.20
904 1 0.00
906 3 0.00
907 29 0.02
908 2 0.00
909 20 0.01
910 333 0.19
911 348 0.20
912 39 0.02
913 3 0.00
914 25 0.01
915 36 0.02
916 6 0.00
917 8 0.00
918 8 0.00
919 13 0.01
920 64 0.04
921 11 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (898 bp):
TAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGCCG
GCCAGAGGGCTGGATGCGCAAGCTGGGGATCGAACAGGTCCCCTCTGCATGCTGCCGATCCTGCT
GCTGCAACCCTTGATCCGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
TGAAACGAGCGGACGGGCGGGCGAGCACTGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
CTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTAA
TGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
AACCCCCCGGCCCCCCGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCTAGCGATGCTCCG
ACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAACATGTGCTGCTG
CAACCTCGGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTAAGAC
Found at i:14916116 original size:910 final size:895
Alignment explanation
Indices: 14913300--14916225 Score: 3661
Period size: 911 Copynumber: 3.2 Consensus size: 895
14913290 CCATTTGAAC
** * * *
14913300 TTAGACTGGGAATGAACTTTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCC
* * ** **
14913365 GGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGGCCGGGTCCC-CTTCTGGGTGCTGCCGATCC
66 GGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTC-TCTGCATGCTGCCGATCC
* * * *
14913429 TACTGCTGCAACCCTCGGTCCGGTCCAATCTTACACTAGGAATGAACTCCGTATGCCTAAGCCGA
130 TACTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14913494 CCGATGAAACGAGCGGGCGGGCGGGC-A-CTAC-GCCGGCCAGAGAGACGGGATGCGCAAGCTGT
195 CCGACGAAACGAGCAGACGGGCGGGCGAGC-ACTGCCGGCCAGAGAGACGGGATGCGCAAGCTGT
14913556 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
259 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
* * *
14913621 ATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCATGTGAAGTTTCATGGCAAAAGGACTC
324 ATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTC
* * *
14913686 GTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAAATGTTTT-AGA
389 GTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTTTCAGA
* *
14913750 AGGAGCTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG-ATGGACAAAAAAAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
*
14913814 TCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC-ATTTCAGAC
*
14913879 ACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCACTTTAAGGGGGGTGTGAGTTC
582 AC-TTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTC
* *
14913944 TCGAGGTATGAT-AAGGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCA
645 TCGAGGTTTGATGAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * *
14914008 TGTGCGCACACCCCCCCGGCCCCCCCGATCAACGAAACCCCAATGTCGTCGGTCAGGTTCTCT-G
710 TGTGCGCACA-CCCCCCGG-CCCCCCGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCTAG
* * *
14914072 GCGATG-CTTCGTCGATAGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
773 GCGATGCCTT-GACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCAAG
* * *
14914136 CATGTGCTGCTGCAACCCTCGG-TCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
837 CATGTGCTGCTGCAA-CCTCGGTTC-GGTCTGATCTTAGACTGGGAATGAACTCCGTCTGG
* * * * **
14914196 TTAGACAGGGAATGAACTCCGTAAGCCTAAGTTAACCCACAAAACGAACGTGCAGGCGCTCAATC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCC
* * * * * * * * * *
14914261 GGCTAGAGGGGTGGGATACGTACGTCGGGGATCAACCGAGTCCCCCTCAGCATGCTGCCGATCCT
66 GGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCATGCTGCCGATCCT
* ** * * * *
14914326 GCTGCCCCAACCCTCAGTTCGGT-TCAATCTTAGACTGGGAATCAACTCCGTACGCCTAAGCCAA
131 ACTGCTGCAACCCTCAGTCCGGTCT-AATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
14914390 CCGACGAAACAAGCGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCG
195 CCGACGAAACGAGCAGACGGGCGGGCGAGCACT--GCCGGCCAGAGAGACGGGATGCGCAAGCTG
* * *
14914455 TGGATCGATAGGGTGGTACGTGGGTTTAGGGACATCTTCATATTTTTGCATGCCAATGCCATTTT
258 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT
* * * * * *
14914520 TATGACTTGTCAATTCAAATAATGGTCCTTTAAGCCTTCACATGAAGTTTCATGGCGAGATGACT
323 TATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
* * * * * *
14914585 CATTTTCTATTATTCATGATTTTCGAAACTTTTTACGGTTCTAGATTTTTTAAAATTTTGTCGGA
388 CGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGA
* * * *
14914650 AGGATTTTTGGCCCCAAACTTGGTAGATGTGATCCTTATATTTTT-TTGACATGCACAAAAAAAT
453 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * * *
14914714 TCAGGTAAAAACTCGATGCGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAC
518 TCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGAC
*
14914779 ACTGTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
582 ACT-TAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCT
* *
14914844 CGAGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGTACATCAT
646 CGAGGTTTGATGAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
14914908 GTGCGCACAACCCCCCGGCCCCTCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCTA-GC
711 GTGCGCAC-ACCCCCCGGCCCCCCGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCTAGGC
* * * * *
14914972 GATG-CTCCGGCGATGGTGCCCTGACGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAA-C
775 GATGCCT-TGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAG-CCAAGC
* * *
14915035 ATGTGCTGCTGCAACCTGTGGTTTGGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTGAGC
838 ATGTGCTGCTGCAACCT-CGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCG--T--CT--G-
14915100 CAACCG
895 -----G
* * * * *
14915106 ACTAGAATGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCGGGTGCTCAGC
1 -TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGC
* * * * * *
14915171 CGACCAGAGGCGCT-GGATGCGCAAGCTGAGGATCGATCAGGTCCCTCTCTGCATGCTACCGATC
65 CGGCCAGAGG-GGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCATGCTGCCGATC
* * * * * *
14915235 ATGCTGCTGCAACCCT-TGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCC
129 CTACTGCTGCAACCCTCAG-TCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCC
* * * *
14915299 AACCAATGAAACGAGCAGACGGGCGGGCGAGCACTGCACTGGCTAGAGAGACGGGACGCGCAAGC
193 AACCGACGAAACGAGCAGACGGGCGGGCGAGCACTGC-C-GGCCAGAGAGACGGGATGCGCAAGC
* **
14915364 TGTGGATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
256 TGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
14915429 TTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAG-CTTCACGTGAAGTTTCATGGCAAGATGA
321 TTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGA
* * * *
14915493 TTGGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCA
386 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCA
* **
14915558 AAAGGAGTTTTGGCAACAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
451 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAA
*
14915623 AAATCAGCTAAAAA-TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAG
515 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAG
* * *
14915687 ACACTTATTGGCTATTGGCAAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAATT
580 ACACTTAATGGCTACTGGC-AGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
14915752 CTCGATGTTTGATGAAGGGATAGGGGGCCAATATAAAGGGCCAAGTACGCAGCCACGCGATCGCA
644 CTCGAGGTTTGATGAAGGGATAGGGGGCCAATAT-AAGGGCCAAGTAC-CAG-CAC-CCATCGCA
* * * *
14915817 CAGCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGATCCCCCAATGCCGTCGGTCAGTGATC
705 CATCATGTGCGCACACCCCCCGGCCCCCCGATCGACGGA-ACCCCAATGCCGTCGGTCAG-GTTC
* * * * * *
14915882 CCTAGGCGATGCACTTGACGATGGTAGCCCCGATGAAGGAAAAATGCCATACCTGCACATGCTCG
768 TCTAGGCGATGC-CTTGACGATGGT-GCCCCGACGAA-GAAAAATGCGACACCAGCACATGCCCG
*
14915947 AGCCAAGCATGTGCCTGCT-AAACACTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTACCGT
830 AGCCAAGCATGTG-CTGCTGCAAC-CTCGGTTCGGTCTGATCTTAGACTGGGAATGAACT-CCGT
14916011 -TGG
892 CTGG
* *
14916014 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCCAAACCCCACGAAACGAGCGTGCAGGCGCTCA
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGT-C-AA-CCCACAAAACGAGCGTGCAGGCGCTCA
** * * *
14916079 GCCGGTGAAAGTGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCTCCTCTATG--TGCTGCCG
63 GCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGT-C-CCTCTCTGCATGCTGCCG
* * * *
14916142 ATCCTACTG-TCACAACCCTCAGTCCAGTTTGATCTTAGACTAGGAATGAACTCCGTATGCCTAA
126 ATCCTACTGCT-GCAACCCTCAGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAA
*
14916206 GCCAATCGACGAAACGAGCA
190 GCCAACCGACGAAACGAGCA
14916226 AGCCGTGGAT
Statistics
Matches: 1728, Mismatches: 239, Indels: 112
0.83 0.11 0.05
Matches are distributed among these distances:
896 179 0.10
897 6 0.00
898 134 0.08
899 106 0.06
900 351 0.20
901 3 0.00
902 1 0.00
904 1 0.00
907 29 0.02
908 2 0.00
909 19 0.01
910 325 0.19
911 358 0.21
912 40 0.02
913 3 0.00
914 26 0.02
915 36 0.02
916 7 0.00
917 6 0.00
918 8 0.00
919 16 0.01
920 62 0.04
921 10 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (895 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAACGAGCGTGCAGGCGCTCAGCC
GGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCTCTCTGCATGCTGCCGATCCT
ACTGCTGCAACCCTCAGTCCGGTCTAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAAC
CGACGAAACGAGCAGACGGGCGGGCGAGCACTGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGT
TTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGG
AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCA
GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCATTTCAGACACTT
AATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG
TTTGATGAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCGGCCCCCCGATCGACGGAACCCCAATGCCGTCGGTCAGGTTCTCTAGGCGATGCC
TTGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCAAGCATGTGCTG
CTGCAACCTCGGTTCGGTCTGATCTTAGACTGGGAATGAACTCCGTCTGG
Found at i:14919687 original size:172 final size:171
Alignment explanation
Indices: 14919375--14919690 Score: 461
Period size: 171 Copynumber: 1.8 Consensus size: 171
14919365 GGTGCTCAGC
* * * *
14919375 CGGCCAGAGGGGCAGGATGCGCAACCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCT
1 CGGCCAGAAGGGCAGGATGCGCAACCCGAGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCT
* * *
14919440 TGCTGCCACAACCCTCGATCCGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAA
66 TGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
*
14919505 CTGACGAAACGAGCGTGTGGGCGGGCAGGCGGGAACTACGT
131 CCGACGAAACGAGCGTGTGGGCGGGCAGGCGGGAACTACGT
* * * *
14919546 CGGCCAGAAGGGCGGGATGCTCAAGCCGAGGATCGGCCGAGTCCCCCTCTGCGTGCTACCGATCT
1 CGGCCAGAAGGGCAGGATGCGCAACCCGAGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCT
* ** * * *
14919611 TGCTATCGGAACCCTCCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCA
66 TGCTACCACAACCCT-CGATCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCA
14919676 ACCGACGAAACGAGC
130 ACCGACGAAACGAGC
14919691 TGGCGGACGG
Statistics
Matches: 126, Mismatches: 18, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
171 68 0.54
172 58 0.46
ACGTcount: A:0.21, C:0.31, G:0.31, T:0.18
Consensus pattern (171 bp):
CGGCCAGAAGGGCAGGATGCGCAACCCGAGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCT
TGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGTGTGGGCGGGCAGGCGGGAACTACGT
Found at i:14919717 original size:172 final size:171
Alignment explanation
Indices: 14919375--14919725 Score: 456
Period size: 172 Copynumber: 2.0 Consensus size: 171
14919365 GGTGCTCAGC
* * * *
14919375 CGGCCAGAGGGGCAGGATGCGCAACCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCT
1 CGGCCAGAAGGGCAGGATGCGCAACCCGAGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCT
* * *
14919440 TGCTGCCACAACCCTCGATCCGGTCCGATCTTAGGCTGGGAATGAACTCCGTATGCCTAAGCCAA
66 TGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
* *
14919505 CTGACGAAACGAGCGTGTGGGCGGGCAGGCGGGAACTACGT
131 CCGACGAAACGAGCGTGTGGGCGGGCAGGCAGGAACTACGT
* * * *
14919546 CGGCCAGAAGGGCGGGATGCTCAAGCCGAGGATCGGCCGAGTCCCCCTCTGCGTGCTACCGATCT
1 CGGCCAGAAGGGCAGGATGCGCAACCCGAGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCT
* ** * * *
14919611 TGCTATCGGAACCCTCCGGTCTGGTCTGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCA
66 TGCTACCACAACCCT-CGATCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCA
* *
14919676 ACCGACGAAACGAGC-TG-GCGGACGGGC-GGATAGGCACTACGT
130 ACCGACGAAACGAGCGTGTG-GG-CGGGCAGG-CAGGAACTACGT
14919718 CGGCCAGA
1 CGGCCAGA
14919726 GAGACAGGAT
Statistics
Matches: 155, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
170 1 0.01
171 74 0.48
172 80 0.52
ACGTcount: A:0.21, C:0.30, G:0.32, T:0.17
Consensus pattern (171 bp):
CGGCCAGAAGGGCAGGATGCGCAACCCGAGGATCGACCGAGTCCCCCTCTGCGTGCTACCGATCT
TGCTACCACAACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGTGTGGGCGGGCAGGCAGGAACTACGT
Found at i:14921264 original size:26 final size:26
Alignment explanation
Indices: 14921235--14921287 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14921225 CCGGTCTGAT
14921235 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* * *
14921261 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14921287 C
1 C
14921288 CTAAGTCAGC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14921853 original size:26 final size:26
Alignment explanation
Indices: 14921824--14921876 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14921814 CTGGTCTGAT
*
14921824 CTTAGATTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
*
14921850 CTTAGACTGGGAATTAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
14921876 C
1 C
14921877 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.15, G:0.25, T:0.34
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:14922764 original size:26 final size:26
Alignment explanation
Indices: 14922728--14922780 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14922718 TGGTTTCGAT
14922728 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14922754 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14922780 C
1 C
14922781 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14923494 original size:26 final size:26
Alignment explanation
Indices: 14923458--14923510 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14923448 TGGTTTCGAT
14923458 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14923484 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14923510 C
1 C
14923511 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14924375 original size:26 final size:26
Alignment explanation
Indices: 14924346--14924398 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14924336 CTGGTCCGAT
*
14924346 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGAATG
14924372 CTTAGACTGGGAATGAACTCCGAATG
1 CTTAGACTGGGAATGAACTCCGAATG
14924398 C
1 C
14924399 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.26, T:0.23
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGAATG
Found at i:14926158 original size:26 final size:26
Alignment explanation
Indices: 14926129--14926181 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14926119 CCGATCTGAT
*
14926129 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
* *
14926155 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAAATCCGTATG
14926181 C
1 C
14926182 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATGAAATCCGTATG
Found at i:14928840 original size:26 final size:26
Alignment explanation
Indices: 14928811--14928863 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14928801 TTGGTCCGAT
*
14928811 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14928837 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
14928863 C
1 C
14928864 CTCAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:14931157 original size:902 final size:899
Alignment explanation
Indices: 14923098--14932442 Score: 11967
Period size: 902 Copynumber: 10.4 Consensus size: 899
14923088 AAATTCATAC
*
14923098 AAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
1 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
14923163 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
66 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
14923228 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACA
131 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * **
14923293 TCATGTGCGAACACCCCCTTGGCCCACCCGATTGCCGGAACCCCAATGTCGCCATTCAGGTTCTC
196 TCATGTGCG-ACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT-T-
* * * * *
14923358 CGACGATGCACCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCA
258 --TCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* *
14923423 GCATGTGCTGCCGCAACCCTCGGTCTGGTTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
321 GCATGTGCTGCCGCAACCCTCGGTCCGG-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
14923488 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGAT-CGGGTGCTCAGTCGG
385 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-TGCGGGCGCTCAGTCGG
* * * * * * *
14923552 CCAGAGGGGCGGGATGCGCAAGCTGGGAATCGATCGAGTCCCCCTCTGTGTGCTGTCAATCTTGC
449 CCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGC
** * *
14923617 TGCCGCAACCCTC-GATCCAGTCTGATCTTTGACTGGGAATGAACTTCGTATGCCTAAGCCAACC
514 TGCCGCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * *
14923681 GACG-AA--A-TGAGCGAGCGGGCGGGCGGGCACAACGCC-AGCCAGAGAGATGGGATGCGCAAG
578 GACGAAACGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCAAG
** *
14923741 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAACGCCAT
642 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCAT
14923806 TTTTATGGCTTGTAAATT-ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
707 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
14923870 ACTCGTTTTCTATTTTTCATAATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTC
772 ACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTC
* ** * ** *
14923935 GAAAGGAGTTTTGGCCCTGAACTTGGTAAATATGATCCTTGTATTTTTGTTGGCGTGCACAAA
837 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
14923998 AAAATTCAGCTAAAAACTCGAAGTGTACTAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
1 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
** * * *
14924063 CAGACACTTTAATTTCAATTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
66 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
14924128 GTTTTTGAGGTTTGAAGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
131 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * * *
14924193 TCTTGTGCGCACACCCCCCCTGTCACCCCGATCGTCGGAACCCCAATGCTGTCGGAT-AGG---T
196 TCATGTGCG-ACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGG-TCAGGTTTT
* * * * *
14924254 ---T-CTCCGACGATCGTGCCCCGACGAAGAAAAATGTGGCTCCAGCACATGTCTGAGCCCAAG-
259 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC-AGC
* *
14924314 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGCATGCTTAGAC
323 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * *
14924379 TGGGAATGAACTCCGAATGCCTAGGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCTAG
388 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAG
* * * * * * *
14924444 AGGGG-TAGGATGCGCAAGCCGAGGATCGGTCGGGTCCCCCTCTGCATGCTATCGATCCTACTAC
453 AGGGGCGA-GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGC
* ** * * *
14924508 CGCAAGCCTTGGTCTGGTTTGATCTTAGACTGGGAATGAACTCTGCATGCCTAAGCCAACCGACG
517 CGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * * *
14924573 -AACGA----GCGGGCGGGCGGGCGGGCACTATGACGGCCAGAGAGACTGGATGCGCAAGCCATG
582 AAACGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTG
*
14924633 GATCG--A------TA---GGGTTTAGGCACATCTTCATATTTCTGTGTGGCAATGCCATTTTTA
647 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
*
14924687 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGATC-ACTC
712 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-CGACTC
* ** *
14924751 GTTTTTTATTTTTCATGATTTTTGAAACTTTTTGTGGTTCTG-GATTTTTTAAAATTTTTTTGGA
776 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGGA
* *
14924815 AGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAA
840 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
** * *
14924875 AAAATTCAGCTAAAAACTTAAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGCGTCCCCATTT
1 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
** * *
14924940 CAGACACTTTAATATCAATTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
66 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
14925005 GCTT-TTGAGGTTTGACGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
131 G-TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
** *
14925069 ATCATGTGCGCACACCCCC-CAGGCCCCCCCGATCACCGGAACCCCAATGCCGCCAGTCAGGTTC
195 ATCATGTGCG-ACACCCCCTC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT-
* * * * * *
14925133 TCAAGCGATTCTCCGACGATGGTGCCCCGATGAAGAAAAATACGACACCAGCACAAGCCCGAGCC
257 T---TCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * *** * * * ***
14925198 TAGCATGTGCTACCTTGACCCTCGGTCTGATCCGATCTTGGACTGGGAATGAACTTTATATGCTT
319 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
14925263 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACAAAATGAGTGTGCGGGCGCTCAG-CTG
384 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-G
* * * ** * * * *
14925327 GCCAGAGGGGCGGGATGCACTAGCCAAGGATCGACCGGGTCCCCCTCTGTGTGTTGCCGATCCTG
448 GCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTG
* * * ** * * * *
14925392 TTGTCACAACCCTTGGTCTGATCTAATCTTAGACTGGGAACGAACTCCGTATGCCTAAGCCAACT
513 CTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
* * * * * * * *
14925457 GACGAAACGAGTGGGAGGGCGGACGGGCAGGCATTACGCCGGCTAGAGGGACGGGATGCGTAAGC
578 GACGAAACGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGC
* *
14925522 CATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAAATTTCTGTGTGCCAATGCCATT
643 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATT
*
14925587 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGA
708 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
14925652 CTCGTTTT-TTTTTCTTCACT-ATTTTTGAAACCTTTTATGGTTCGGGATTTTTTAAAATTTTTT
773 CTCGTTTTCTATTT-TTCA-TGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
*
14925715 CGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
836 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14925779 AACATTCTGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATCTGAAAAAAGTGTCCCCATTT
1 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* ** * *
14925844 CAGACATTTTAATGGCTACTGGTGGCAAACCTGCAAAATCTCAAATGCTCTTTAACGGGGTGTGA
66 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * * *
14925909 GTTCTCAAGATTTGATGAGTGATAGGGGGCCAATATGAGGGCCAAGTA-CTGTCACCCATCACAC
131 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCAC
* **
14925973 ATCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGTTCGGAACCCCAGTGCCGTTGGTCAGG--
195 ATCATGTGCG-ACA-CCCCCTCGGCCCCCCCGATCG-TCGGAACCCCAATGCCGCCGGTCAGGTT
* * *
14926036 TT---T--TCCGGCGATGGTGCCCCGACGAAGAAAAATGTGGCACCAGCACTTGCCCGAGCCCAG
257 TTCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * * *
14926096 CATGTGCTGTCGCAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAAATCCGTATGCTTAGA
322 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * *
14926161 CTAGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTGCGGGCACTCAGTCGGCCA
387 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCA
* * * * * ** * ** *
14926226 GAGGGGCGAGATGGGTAAGCCGAGGATGGACCAAGTCCCCCTCTGCGTGGTGTAAATCTTGCTGC
452 GAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGC
* * *** * * * *
14926291 TGCAACCCTCGGTCCAATCTAATCTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGATG
517 CGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
14926356 AAACGAGTGGGCGGGCGGGCGGGCGAGCACTACGCTGGCCAGAGAGACGGGACGCGCAAGCCGTG
582 AAACGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTG
* * * * **
14926421 GATCGATAGGGTGGTAGGTGGATTTTAGGCACATCTTCATATTTGTATATGCCAATGATATTTTT
647 GATCGATAGGGTGGTAGGTGG-GTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT
*
14926486 ATGGCTTGTAAATTCGTACAATGG-CTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
711 ATGGCTTGTAAATTCATACAATGGTC-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
14926550 CGTTTTCTATTTTTCATGATTTTTGAAACATTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGA
775 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGA
* *
14926615 AGGAGTTTTGGCCCCAAACTTGATAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAA
840 AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14926675 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTCTGACCATTTGAAAAAAGTGTACCCATTT
1 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
14926740 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAAGGGGGTGTG
66 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTG
* *
14926805 AGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAACGCAC
130 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * *
14926870 ATCATGTGCGCACACCCCCCCGGCCCCCTCGATC-TCTGGAACCCCAATGCCGCCGGTTAGGTTC
195 ATCATGTGCG-ACACCCCCTCGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTT-
** * ** ** *
14926934 TCTGACGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAATGCGGGGCTGGCACATGTCCGAGCC
257 T-T--CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * ** * * * *
14926999 CATCATGTGCTGTCGCAACCCTCAATCTGGTCCGATCTTGGATTGAGAATGAACTCCGTATGCTT
319 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * *
14927064 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACTCACGAAACAAGCGAT-CGGGTGCTCAG-CG
384 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG-TGCGGGCGCTCAGTC-
* * * * * * * * * *
14927127 GGCCAGAGGGGCGGGATGCGTAAGCCGAGAATTGGTCGAGTCCCCCTCTGCGTGCTATCAATCTT
447 GGCCAGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCT
* * * * *
14927192 GTTGCCGTAACCCTCAGTCTGGTCTGATCTTTGATTGGGAATGAACTCCGTATGCCTAAGCCAAT
512 GCTGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * *
14927257 CGATGAAACGA----GCGGGCGGGCGGGCAGGCACAACGCC-AGCCAGAGAGATGGGATGCGCAA
577 CGACGAAACGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCAA
* *
14927317 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTTCCAATGCCA
641 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCA
* * * *
14927382 TTTTCATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCGTCACATGAAGTTTCATGGCAGGAC
706 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
** ** *
14927447 GACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAAATTTTT
771 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTT-AAAATTTTT
* * *
14927512 T-GGAAGGTGTTTTGGCCCTAAACTTGGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAA
835 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14927576 AACATTCTGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATCTGAAAAAAGTGTCCCCATTT
1 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * *
14927641 CAGACACATTAATGGCTACTGGCGGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGGGGTGA
66 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14927706 GTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAAGGGCCAAGTACCGGCACCCATCACACA
131 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
**
14927771 TCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGCTCGGAACCCCAATGCCGTTGGTCAGG---
196 TCATGTGCG-ACA-CCCCCTCGGCCCCCCCGATCG-TCGGAACCCCAATGCCGCCGGTCAGGTTT
** ** * *
14927833 T---T-CTCCGGTGATGGTGCCCCGGTGAAGAAAAATGCGGCACTAGCACTTGCCCGAGCCCAGC
258 TCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * *
14927894 ATGTGCTGCCGTAACCCTCGGTCCGGTCCGATCTAAGACTGGGAATGAACTCCATATGCTTAGAC
323 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* * * * * *
14927959 TGGGAATGAACTTCGTATGCCTAACTCAACCTATGAAACGAGTGTGCGGGCGCTCAGTCGGCCAT
388 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAG
* * * * * * *
14928024 AGGGGTGGGATGGGCAAGCCGGGGATCGACCAGGTCCCCCTCTGTGTGCTGTCGATCCTGCTGCT
453 AGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
** *
14928089 GCAACCCTTGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
518 GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* *
14928154 AACGA--------GCGGGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGG
583 AACGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
*
14928211 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTATATTTCTGTGTGCCAATGCCATTTTTAT
648 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
* *
14928276 GGCTTGTAAATTTATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGT
713 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * *
14928341 TTTCTATTTTTCACGATTTTT-AACACTTTTTACGATTCGGGATTTTATAAAATTTTTTCAGAAG
778 TTTCTATTTTTCATGATTTTTGAA-ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
*
14928405 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTAGGCATGCACAAA
842 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* ** * *
14928463 AAAATTCAGCTAAAAACTCGAAGTGTAGAAGATTTTACGATCATTTGAAAAAAGTGTCCACATTT
1 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * **
14928528 CGGACACTTTAATGGCTACTGGCAGTAAA-CTGGTAAAATCTCAAATGCTCTTTAAAGGGTTAAG
66 CAGACACTTTAATGGCTACTGGCAGCAAACCT-GTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
14928592 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCAC
130 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
14928657 ATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTCGGTCAGG---T
195 ATCATGTGCG-ACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTTT
* * * * *
14928719 ---T-CTCCGACGATGGTGCCCTGGCGAATAAAAATGCAGCACCCGCACATGCCCGAGCCCAGCA
259 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * **
14928780 TGTGCTGCCACAACCCTCAGTTTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
324 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* * * *
14928845 AGGAATGAACTCCGTATGCCTCAGTCAACGCACGAAACGAGCGTGCGGGCGCTCAGTCTGCCAGA
389 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA
* * * *
14928910 GAGGCGGGATGCGCAAGCCAGGGATCTG-TCGGGTCTCCCTCTGCGTGCTGTCGATCCTGCTGCC
454 GGGGCGAGATGCGCAAGCCGGGGATC-GATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
* * * * *
14928974 GCAACCTTCGGTCTGGTCTAATCTTAGACTGGGAATAAACTCCTTATGCCTAAGCCAACCGACGA
518 GCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
** * ** * *
14929039 AACGAACGGGTGAACGGGCGGGTGGGCACTACGCCGACAAGAGAGACGGGATGCGCAAGCCGTGG
583 AACGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGG
*
14929104 ATCGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
648 ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTAT
* *
14929169 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGGAGGACGACTCGT
713 GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGT
* * * * * *
14929234 TTTCTATTTTTCACGATTTTTAAAACTTCTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAAG
778 TTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGG
*
14929299 AGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
843 AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* * *
14929356 AACATTCAGCTAAAAACTCGAAGTGTACAAGA-TTTGTGACCTTTTGAAAAAAATGTCCCCATTT
1 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14929420 CAGACAATTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGATGTGA
66 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * *
14929485 CTTCTCGAGGTTTGATAAGGGATAGGGGGCCAACATAAGGGCCAAGTACTAGCACCCATCGCATA
131 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
14929550 TCATGTGCGCAAACCCCC-CGACCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAAGTTCTC
196 TCATGTGCG-ACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT-T-
* * * * *
14929614 CGGCGAAGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAACACATGCTCGAGCCCA
258 --TCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
*** * * * *
14929679 GCATGTGCTATTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAGCTCTGTATGCTTGG
321 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * ** *
14929744 ACTGGTAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCATGCGGGCGCTCAACCAGCC
386 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
* * * * * * ** **
14929809 AGAGGGG-TAGGATGCACAAGCTGGGGATCGGTCGGGTGCCCCTCTACGTGCTACCGATATTGCT
451 AGAGGGGCGA-GATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGC-
** *
14929873 TGTTGCAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
514 TGCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
* * * * * *
14929938 ATGAAACGAGCGGGCGGGTGGGCAGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCA
579 ACGAAACGAGTGGGC----GGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCA
* **
14930003 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTACGTGCCAATGCC
640 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
* *
14930068 ATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGA
705 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* ** *
14930133 TGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTT
770 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * * * * *
14930198 TCGGACGGTGTTTTGGGCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCATAAA
835 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
14930263 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
1 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14930328 CAGACACTTTAATGTCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGA
66 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
**
14930393 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCATACA
131 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
14930458 TCATGTGCG-CACCCCCTCGACCCCCACGATCGTCGGAACCCTAATGCCGCCGGTCAGGTTATTC
196 TCATGTGCGACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTT-TTC
** * *
14930522 GGGGATGCTCCGGTGATGGTGCCCC-AGTGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCA
260 ---GATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCA
* ** * * * *
14930586 GTATGTGCTGTTGTAACCCTCTGTCCGGTCCGATCTTAGATTGGGAATGAACTCCGTCTGCTTAG
321 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG
* * * * **
14930651 ACTGGCAATGAACTCTGTATGCCTAACTCAACCCACAAAACGAGCGTGCAAGCGCTCAGTCGGCC
386 ACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCC
* * * * *
14930716 AGAGGGGCGAGATGCGTAAGCTGGGGATCGATCGGGTTCCCCTCTGTGTGCTG-CCAGTCCTGCT
451 AGAGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGA-TCCTGCT
* *
14930780 GCCGCAACCCTCACTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGA
515 GCCGCAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * ** * * *
14930845 CAAAACGAGTGGGCGGGCGGGTGGGCGGGCACTATACCGACCAAAGAGACGGGATGCGTAAGCCA
580 CGAAACGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCG
* ** *
14930910 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTGTGCATGCCAATTCCATTTT
645 TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTT
*
14930975 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACT
710 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* * *
14931040 CGTTTTTTATTTTTCATGATTTTGGAAACATTTTT-CGGTTCAAGATTTTTTAAAATTTTTTCGG
775 CGTTTTCTATTTTTCATGATTTTTGAAAC-TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGG
* * * * * *
14931104 AAGGGGTTTTGGCCCCAAACTTGGTAGACGTAATCCTAGTATTTCTATTGGCATGAACAAA
839 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14931165 AAAATTCAGCTAGAAACTCGAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTT
1 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
14931230 CAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATATCAAATGCTCTTTAAGGGGGTGTGA
66 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
14931295 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCACATA
131 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* *
14931360 TCATGTGC-ACACACCCCACTGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG---T
196 TCATGTGCGACAC-CCCCTC-GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTTT
* * *
14931421 ---T-CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCAAGCCCAACA
259 CGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * * * * *
14931482 TGTGCTGCCGCAACCCTTGATCCGGTCTGATCATAGATTGGGAATGAACTCTGTATGCTT-GCAC
324 TGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAG-AC
** * *
14931546 TACGAATGAACTCCGTAT-ACTAAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGTCGACCAG
388 TGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAG
* *
14931609 AGGGGCGAGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCC
453 AGGGGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCC
* ** *
14931674 GCAACCCT-TGATCTGGTCTGATCTTAGACTACGAATGAACTCCGTATGCCTAAGCAAACCGACG
518 GCAACCCTCAG-TCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
* * * *
14931738 -AACGAGCGGGC-GTCGGGCAGGCGGGCACTACGCC-AGCCAGAGAGACAGGATGCGCAAGCCGT
582 AAACGAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGA-CCAGAGAGACGGGATGCGCAAGCCGT
*
14931800 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTT
646 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT
* * ** * *
14931865 CTGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTTCATATGAAGTTTCATGGCAAGATGACCC
711 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
* ** **
14931930 GTTTTCTATTTTTCACGATTTTCAAAACTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTCGGAA
776 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAA
* * * * *
14931995 GGAGTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTTTTTCGCTTGCA-TAA
841 GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
14932053 AAAATTCCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACAATTTGAAAAAAATGTCCCCATT
1 AAAATT-CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
14932118 TCAGACACTTTAATTGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
65 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
*
14932183 AGTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
130 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * * *
14932248 ATCATGTGCGCACACCCCCCTCCCAGCCTCCCCGATCG-CTGGAACCCCAATGTCACTGGTCAGG
195 ATCATGTGCG-ACA-CCCCCT--CGGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGG
* **
14932312 TTCTCCGCTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGA
255 TT-T--TC-GATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * *
14932377 GCCCAGCATGTGTTGCCACAACCCTTGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
316 GCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
14932442 C
381 C
14932443 CTAAGCCAGC
Statistics
Matches: 7383, Mismatches: 911, Indels: 299
0.86 0.11 0.03
Matches are distributed among these distances:
876 57 0.01
877 385 0.05
878 3 0.00
879 2 0.00
885 308 0.04
886 34 0.00
887 504 0.07
888 473 0.06
889 528 0.07
890 15 0.00
891 439 0.06
892 219 0.03
893 479 0.06
894 6 0.00
895 361 0.05
896 332 0.04
897 89 0.01
898 3 0.00
899 1 0.00
900 314 0.04
901 324 0.04
902 775 0.10
903 197 0.03
904 430 0.06
905 20 0.00
906 371 0.05
907 556 0.08
908 158 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (899 bp):
AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGACACCCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTTTCG
ATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
TGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGG
GGCGAGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCA
ACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
GAGTGGGCGGGCGGGCGGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATC
GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
CTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGT
TTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
Found at i:14934035 original size:26 final size:26
Alignment explanation
Indices: 14933999--14934057 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
14933989 TCCGGTCCAG
*
14933999 TCCG-ATG-TTAGAGTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
14934023 TCCGTATGCTTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
14934049 TCTGTATGC
1 TCCGTATGC
14934058 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:14934828 original size:26 final size:26
Alignment explanation
Indices: 14934789--14934841 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14934779 CCAGTCCTAT
*
14934789 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
14934815 CTTAGACTGCGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
14934841 C
1 C
14934842 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:14934900 original size:784 final size:782
Alignment explanation
Indices: 14933394--14934929 Score: 2314
Period size: 784 Copynumber: 2.0 Consensus size: 782
14933384 GCGTAAGATG
* *
14933394 TGGATCGATAGGGTAGTAGGTGGGTTTAGGTACATCTTCATATTTTGCATGCCAATGCCATTTTT
1 TGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCATCATATTTTGCATGCCAATGCCATTTTT
**
14933459 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACTT
66 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACCC
* * * *
14933524 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGGAA
131 ATTTTCAATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGAAA
* ** *
14933589 GGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATT
196 CGAGTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
14933654 CAGCCAAAAACTCGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
261 CAGCCAAAAACTCGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
* * * *
14933719 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCAGTTTGGGTTGTGAGTTCTCG
326 CTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCA-TTTGGGGTGTAAGTTCTCG
*
14933784 AGGTTTGATGAGGGATAGGGCACCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
390 AGGTTTGATGAGGGATAGGGCA-CAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * * * *
14933849 TGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCTAATGTCGTCGATCAGGTTCTTCGGTGAT
454 CGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGAT
* * * *
14933914 GCTCCGATGATGGTGCCCCGGTGAAGAAAAATGCGACAGCAGCAATGCCCAAGCCCAGCATGTGT
519 GCTCCGATGATGGTGACCCGATGAAGAAAAATGCGACACCAGCAATGCCCAAGCCCAGCATGTGC
* * * * *
14933979 TGCCGCAACCTCCGGTCCAGTCCGATGTTAGAGTGGGAATGAACTCCGTATGCTTAGACTGGGAA
584 TGCCCCAACCTCCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAA
* * * *
14934044 TGAACTCTGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTTTACCTGCCAAAGGGGC
649 TGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCACTTTACCTGCCAAAGGGGA
* * *
14934109 TGGATGCGTAAGCCAGGGATCGATCGGGTCCCCCTCTATGTCTGCCAGAGAGACGAGATGCGGAA
714 GGGATGCGCAAACCAGGGATCGATCGGGTCCCCCTCTATGTCTGCCAGAGAGACGAGATGCGGAA
14934174 GCCA
779 GCCA
* * *
14934178 TGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCATCATATTTCTGCGTGCCAATGCCATTTT
1 TGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCATCATATTT-TGCATGCCAATGCCATTTT
* *
14934243 TATTGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCATGTGAAGTTTCATGGCAAGACGACC
65 TATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACC
* *
14934308 CATTTTCAATTTTTCACGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTTAAAATTTTTTCGAA
130 CATTTTCAATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGAA
* * *
14934373 ACTATTTTTTCCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAAT
195 ACGAGTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAT
* * *
14934437 TCAGCTAAAAACTCGAAGTGTATAAGA-TTTCGTGACCATTTGAAAAAAGTGTCCTCATTTCAGA
260 TCAGCCAAAAACTCGAAGTGTACAAGACTTT-GTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
* *
14934501 CACTTTAATAGCTATTGGCAGCAAATCTATAAAATCTCAAATGCTC-TTTAAGGGGGTGTAAGTT
324 CACTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCATTT---GGGGTGTAAGTT
*
14934565 GTCGAGGTTTGATGAGGGATAAGGGCA-AATATAACGGCCAAGTACCAGCACCCATCGCACATCA
386 CTCGAGGTTTGATGAGGGAT-AGGGCACAATATAACGGCCAAGTACCAGCACCCATCGCACATCA
*
14934629 TGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGG
450 TGTGCGCACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGG
* * * * *
14934693 TGATGCTCCGATGATGGTGACTCGATTAAGAAAAATGCGGCACCAGCACTTGCCCGAGCCCAGCA
515 TGATGCTCCGATGATGGTGACCCGATGAAGAAAAATGCGACACCAGCA-ATGCCCAAGCCCAGCA
*
14934758 TGTGCTGCCCCAACC-CTCGATCCAGTCCTATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
579 TGTGCTGCCCCAACCTC-CGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
*
14934822 TGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCGC-TTAGCC-GACC
643 TGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCACTTTA-CCTG-CC
** * *
14934885 AGGGGGGAGGGATGCGCAAACCGGGGATCGGTCGGGTCCCCCTCT
706 AAAGGGGAGGGATGCGCAAACCAGGGATCGATCGGGTCCCCCTCT
14934930 GCGTGCTGCT
Statistics
Matches: 676, Mismatches: 66, Indels: 20
0.89 0.09 0.03
Matches are distributed among these distances:
782 3 0.00
783 99 0.15
784 367 0.54
785 201 0.30
786 6 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (782 bp):
TGGATCGATAGGGTAGTAGGTGGGTTTAGGCACATCATCATATTTTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTCACGTGAAGTTTCATGGCAAGACGACCC
ATTTTCAATTTTTCACGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTCGAAA
CGAGTTTTGCCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCCAAAAACTCGAAGTGTACAAGACTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATAGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCATTTGGGGTGTAAGTTCTCGA
GGTTTGATGAGGGATAGGGCACAATATAACGGCCAAGTACCAGCACCCATCGCACATCATGTGCG
CACACCCCCCCGACCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGC
TCCGATGATGGTGACCCGATGAAGAAAAATGCGACACCAGCAATGCCCAAGCCCAGCATGTGCTG
CCCCAACCTCCGATCCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGCGAATG
AACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGAGCGGGCACTTTACCTGCCAAAGGGGAGG
GATGCGCAAACCAGGGATCGATCGGGTCCCCCTCTATGTCTGCCAGAGAGACGAGATGCGGAAGC
CA
Found at i:14936575 original size:26 final size:26
Alignment explanation
Indices: 14936546--14936598 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14936536 CCCATTCGAT
*
14936546 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
14936572 CTTAGACTGGGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
14936598 C
1 C
14936599 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:14937450 original size:26 final size:26
Alignment explanation
Indices: 14937413--14937465 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14937403 CCAGTTCGAT
*
14937413 CTTAGACAGGGAATAAACTCCGTATG
1 CTTAGACAGGGAATAAACTCCATATG
* *
14937439 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACAGGGAATAAACTCCATATG
14937465 C
1 C
14937466 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATAAACTCCATATG
Found at i:14938722 original size:882 final size:886
Alignment explanation
Indices: 14934152--14940648 Score: 7431
Period size: 886 Copynumber: 7.3 Consensus size: 886
14934142 CTCTATGTCT
* * * * *
14934152 GCCAGAGAGACGAGATGCGGAAGCCATGGATCGATAGTGTGGTAGGTGGGTTTAGGCACATCATC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
** * *
14934217 ATATTTCTGCGTGCCAATGCCATTTTTATTGCTTGTAAATTCATACAATGGTCCCTTAAGCGTTC
66 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * *
14934282 ATGTGAAGTTTCATGGCAAGACGACCCATTTTCAATTTTTCACGATTTTTGAAACTTTTTTCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * ** * **
14934347 TCGGGATTTTTTAAAATTTTTTCGAAACTATTTTTTCCCCCAAACTTGGTAGACGTGATCCTTGT
196 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
14934412 A-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTATAAGATTTCGTGACCAT
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * * * *
14934476 TTGAAAAAAGTGTCCTCATTTCAGACACTTTAATAGCTATTGGCAGCAAATCTATAAAATCTCAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * * *
14934541 ATGCTCTTTAAGGGGGTGTAAGTTGTCGAGGTTTGATGAGGGATA-AGGGCAAATATAACGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
*
14934605 AGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCCGATCGTCGGAACCC
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCTCCGATCGTCGGAACCC
* **
14934668 CAATGCCG-CCGATCAGGTTCTCCGGTGATGCTCCGATGATGGTGACTCGATTAAGAAAAATGCG
521 CAATGCCGTCAG-TCAGGTTCTCCGACGATGCTCC---GA--G-G---C-A--AAGAAAAATGCG
* * * * *
14934732 GCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCCCAACCCTCGATCCAGTCCTATCTTAGACT
573 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
* * * *
14934797 GGGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
638 AGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACG
* * * * * * * * *
14934862 AGCGAGCGGGCGCTTAGCCGACCAG-GGGGGAGGGATGCGCAAACCGGGGATCGGTCGGGTCCCC
703 AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCA-GGATGCGCAAGCCGAGGATCAGCCAGGTCCCC
* * * *
14934926 CTCTGC--G-T---G---CTGCTGTCGCAACCCTCGGTCCCGTCCGATCTTAGACTGGGAATGAA
767 CTCTGCATGCTACCGATCCTACTGCCACAACCCTCGGT-CCGTCTGATCTTAGACTGGGAATGAA
* * * * * *
14934982 CTCCGTATGCCTAAGCCTACCGACGAAACGAACGGACGAGCAGGCGGGCACTACATCG
831 CTTCGTATGCCTAAGCCAACCGACGAAACG-A-GGATGGGCGGGCGGGCACTACGTCG
* * *
14935040 GCCAGAGAGACAGGATGCGGAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* ** *
14935105 ATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAGCCTTC
66 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * *
14935170 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAGTTTT--C-A------AAACGTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * * * ** * *
14935226 TCGGGATTTTTTTAAATTTTTTTGGAAGGATTTTTTTCCCCAAACCTGGTAGCCGTGATCCTTGT
196 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
14935291 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCT-ACCA
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG-TGACCA
*
14935355 TTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
325 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* *
14935420 AATGCTCTTTAAGGGGGTGTGAGTTCTCAATGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
390 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * * * ** *
14935485 AAGTACTACCACCCATCACACATCATGGGCGCACACCCCCCGGCCCCCGACCCC-CCGATCACCA
455 AAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCC--CCCCGGACCCCTCCGATCGTCG
* * *
14935549 GAACCCCAATACCGTCGGTCAGGTTCTCCAACGATGCTCCGACAATGGTGCCCCTACGAAGAAAA
515 GAACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCG---A--G-G---C-A--AAGAAAA
* * * * *
14935614 ATGTGGCACCAGCACATGCCCTAGCCCAACATGTACTGCCACAACCCTCGGTCCGGT-C---C--
568 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* *
14935673 -GA-T---------CT---TA-G---A-A-TGGGAATGAACTCCGTATGCCTAAGTCAACCCATG
633 AGACTAGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACG
* **
14935718 AAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCATAAGCCGAGGATCA-CCTAGG
698 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCAGCC-AGG
** * * * ** *
14935782 TCCCCCTCTGTGTGGC-ACTGATCC-A--GCCATTGTAACACTCGGTCCGGTCCAATCTTAGACC
762 TCCCCCTCTGCAT-GCTACCGATCCTACTGCCA---CAACCCTCGGTCC-GTCTGATCTTAGACT
* * * * * *
14935843 AGGAATGAACTCCGTATGCTTAAGCCAACCAACGAAATGAACGGACGAGCGGGCGGGAAGGCGGG
822 GGGAATGAACTTCGTATGCCTAAGCCAACCGACG--A--AAC-GAGGA-TGGGC--G--GGCGGG
* *
14935908 CACTATGCCG
877 CACTACGTCG
* * * *
14935918 GCCAGATAGACGAGATGCGGAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
14935983 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * *
14936048 ACATGAAGTTTTATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * * * *
14936113 TCAAGATTTTTTTAAATTTTTTTC-AAAGGATTTTTGGCCCCAAACTTGGTAGACATGATCCTTG
196 TCAGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
14936177 TATTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACGCGAAGTGTACAAGATTTTGTGACCA
260 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
14936241 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCAGTAAAATCTCA
325 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * * *
14936306 AATGCTCTTTAAAGAGGTGTGAGTTCTTGATGTTTGATGAAGGATAGGGGGCCAATATAAGGGCC
390 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
14936371 AAATACCAGCACCCATCGTAGATCATGTGCGCACACCCCCCC-GACCCCCCCGATCGTCGGAACC
455 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCTCCGATCGTCGGAACC
* * * * * ** * *
14936435 CCAGTGCC-ACCGATCAGGTCCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCAC
520 CCAATGCCGTCAG-TCAGGTTCTCCGACGATGCT-CCGAGGCAAAGAAAAATGCGGCACCAGCAC
* * * * ** * * *
14936499 ATGCCTGAGCTC-GACATGTGCTGGCACAACCCTCGGTCCCATTCGATCTTAGACTGGGAATGAA
583 ATGCCCGAGCCCAG-CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAAAGAA
* * *
14936563 CTCCATATGCTTAGACTGGGAATGAACCCCATATGCCTAAGTCAACCCACAAAACGAGCGTGCGG
647 CTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
* * * * *
14936628 GCGCTCAGCCGGCCAGAGGGGCGGGATGCG-AAACTC-AGGGATC-GACCGGGTCCCCCTCTACG
712 GCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC-CGA-GGATCAG-CCAGGTCCCCCTCTGCA
* * * * * * *
14936690 TGCTACCGATCTTGCTACCGCAACCCTCAGACCGGTCTGATCCTAGAC---G-A--AA---CG-A
774 TGCTACCGATCCTACTGCCACAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTTCGTA
* ** * * *
14936745 -G-C---G------G--G---C--GGACGGGCGGATGGGAACTATGCCG
838 TGCCTAAGCCAACCGACGAAACGAGGATGGGCGGGCGGGCACTACGTCG
* * * * *
14936776 GCCAGAGAGACAGGATGCGGAAGCCATGGATTGATAGGGTGGTAGGTGGGTTTAGGCGCATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
*
14936841 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTC
66 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
14936906 ACGTGAAGTTTCATGGCAAGGCAACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * * * * * **
14936971 TCGGGATTTTTCAAAATTTTTTCAGAAGGAGTTTCGGTCCCAAACTTTGTAGATATGATCCTTGT
196 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * *
14937036 ATTTTTGTTTGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGCGTACAAGATTTTGTGACCAT
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
*
14937101 TT-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAA
326 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * *
14937165 ATGCTTTTTAA-GGGGTGTGAGCTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGGGCCA
391 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
14937229 AGTACCAGCACCCATCGCACATCGTGTGCGCACA-CCCCCCGG-CCCCCCCGATCGTCGGAACCA
456 AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCTCCGATCGTCGGAACCC
* * * *
14937292 CAATGCCATCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGTGG
521 CAATGCCGTCAGTCAGGTTCTCCGACGATGCT-C--CGA---------GGCAAAGAAAAATGCGG
* * * * * *
14937357 CACCAGCACATGCCTGAGCCCGGCATGTGCTACCACAACCCTCGGTCCAGTTCGATCTTAGAC-A
574 CACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTA
*
14937421 GGGAATA-AACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCATGAAAC
639 -GGAA-AGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAC
* * * *** * **
14937485 GAGCGTCCGAGCGCTCAGCCGGCCAGAGGGGCAGGATGCGAAAGTTAAGGATCAACTGGGTCCCC
702 GAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCAGCCAGGTCCCC
* * * * * ** ** *
14937550 C-CTACATGCTACCAATCTTGCTACCGTAACCCTCAGACCCGTCTGATCCTAGACTGGGAATGAA
767 CTCTGCATGCTACCGATCCTACTGCCACAACCCTC-GGTCCGTCTGATCTTAGACTGGGAATGAA
* * * * ** * *
14937614 CTCCGTATGCCTAAGCGAACCGATGAAACGAGCGGGTGGATGGGCGGATGCACACTATGCCG
831 CTTCGTATGCCTAAGCCAACCGACGAAACGA--GGATGGGCGGGCGG--G--CACTACGTCG
14937676 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * * * *
14937741 ATATTTCT-TCATGCCAATGTCATTTTTGTGGCTTCTAAATTCATACAATGGTCCCTCAAGCCTT
66 ATATTTCTAT-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
14937805 CATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGG
130 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG
* * * *
14937870 TTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTATATGTGACCCTTG
195 TTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
14937935 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCA
260 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
* * *
14938000 TTTGAAAAAAGTGTCCCCATGTCAAACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCA
325 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
*
14938065 AATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
390 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * * *
14938130 AAGTACCAGCACCCATCACACATCATGAGCGCACACCCCCCCAG-CCCC-CCGATCGCCGGAACC
455 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCTCCGATCGTCGGAACC
* * *
14938193 CCAATGCTGTCGGTCAGGTTCTCCGACAATGCTCC-A-GCAAAGAAAAATGCGGCACCAGCACAT
520 CCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCGAGGCAAAGAAAAATGCGGCACCAGCACAT
* * * *
14938256 GCCCGAACCCAGCATGTGCTGCCGTAACCCTCGGTCCGGTCTGATCGTAGACTAGGAAAGAACTC
585 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAAAGAACTC
* *
14938321 CGTATGCTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
650 CGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* *
14938386 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCAGCCAGGTCCCCCTCTGCATGCTAC
715 CTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCAGCCAGGTCCCCCTCTGCATGCTAC
* * *
14938451 CGATCCTACTGCCGCTACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTA
780 CGATCCTACTGCCACAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTA
14938516 AGCCAACCGACGAAACGA-GATGGGCGGGCGGGCACTACGTCG
844 AGCCAACCGACGAAACGAGGATGGGCGGGCGGGCACTACGTCG
*
14938558 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
***
14938623 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
66 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* **
14938688 ACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACGA-TTTCAAAACTTTTTACGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
** *
14938752 TC-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTTTCCCCAAACTTGGTAGACGTGATCCTTC
196 TCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
*
14938816 TATTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
260 TA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
14938881 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
324 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * *
14938946 ATATGCT-TTTGAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGAATAGGGGGCTAATATAAGGG
389 AAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
*
14939010 CCAAGTACCAGCACCTATCGCACATCATGTGCGCACACACCCCCCGG-CCCCTCCGATCGTCGGA
453 CCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGACCCCTCCGATCGTCGGA
*
14939074 ACCCCAATGCCGTCAGTTAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCGATGAAGAAAAAT
517 ACCCCAATGCCGTCAGTCAGGTTCTCCGACGATGCTCC---GA--G-G---C-A--AAGAAAAAT
* * * *
14939139 GTGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGTAACCCTCGGTCCTGTCCGATCTTAG
570 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* * * * *
14939204 ACTTGGAATGAACTCCATATGCTTAGACTGCGAATGAACTCTATATGCCTAAGTCAACCCACGAA
635 ACTAGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
* * * * * * * * * *
14939269 ACGAGCGTGTGGGTGCTCAACCGGCCAGAGCGACGGGATGCGCAAGCCGGGGATTAGTCGGGTCC
700 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCAGCCAGGTCC
* * * ** * * * *
14939334 CCCTTTGCGTGCTATCGATATTACAGCCACAACCCTCAGTTCCATCTGATCTTAGACTAGGAATG
765 CCCTCTGCATGCTACCGATCCTACTGCCACAACCCTC-GGTCCGTCTGATCTTAGACTGGGAATG
14939399 AACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGTGGGCGGGCGGGCACTACG-CTG
829 AACTTCGTATGCCTAAGCCAACCGACGAAACGAG-GA-----TGGGCGGGCGGGCACTACGTC-G
* * **
14939463 GCCAGAGAGACGGGATGCACAAGCTGTGGATCGATAGGGCAGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
14939528 ATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTC
66 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
*
14939593 ACCTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TTTTGAAAACTTTTTACGG
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTTTTTACGG
* * * **
14939657 TTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTAGGCCCCAAACTTGGTAGACGTG-TACAAG
195 TTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
* * * * *
14939721 -A-TCTTG-TGACATGTACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAAGATCTTGTGACCA
260 TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
*
14939783 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATATCA
325 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
* * * *
14939848 AATGCTCTTTAAGGGGGTGTTAGTTCTTGAGGTATGATGAGGGATAAGGGGCCAATATAAGGGCC
390 AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
* * *
14939913 AGGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC-GACCCCTCCGATCATCGAAACC
455 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCTCCGATCGTCGGAACC
* ** * ** ** *
14939977 CCAATGCCG-CTAGTCAGGTTCTTCGGTGATGGTGCCCCGGTGAAGAAAAATGCGACACCAGCAC
520 CCAATGCCGTC-AGTCAGGTTCTCCGACGATGCT-CCGAGGCAAAGAAAAATGCGGCACCAGCAC
* * * * **
14940041 CTGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGATTGAAC
583 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAAAGAAC
* * * * *
14940106 TCTGTATGTTTAGACTGGGAATAAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGG
648 TCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * **
14940171 CGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGATGATC-GATCAGGTCCCCCTCTGGGTGC
713 CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCAG-CCAGGTCCCCCTCTGCATGC
* * * *
14940235 TGCCGATCCTGCTGCCACAACCCTTGGTCCTGTCTGATCTTTGACTGGGAATGAAC-TCAGTATG
777 TACCGATCCTACTGCCACAACCCTCGGTCC-GTCTGATCTTAGACTGGGAATGAACTTC-GTATG
*
14940299 CCTAAGCCAACTGACGAAACGA-GATGGGCGGGCGGGCGGGCACTACGTCG
840 CCTAAGCCAACCGACGAAACGAGGAT----GGGCGGGCGGGCACTACGTCG
* * * *
14940349 GCCAGAGAGACGGGATGCACAAACTGTGGATCGACAGGGTGGTAGGTGGGTTTAGGCACATCTTC
1 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* *
14940414 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCGTC
66 ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * *
14940479 ACGTGAAGTTTCATGGTAAGACGACTCGTTTACTATTTTTCACGATTTTTAAAACTTTTTGCGGT
131 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
* * ** * * *
14940544 TCATGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGTGCCAAACTTGGTATACATGATCCTCGT
196 TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
14940609 ATTGTTGTTGGCATGCACAAAAAAATTCAGCTAAACACTC
261 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
14940649 CATATGCTTA
Statistics
Matches: 4859, Mismatches: 549, Indels: 400
0.84 0.09 0.07
Matches are distributed among these distances:
856 51 0.01
857 95 0.02
858 313 0.06
859 55 0.01
860 2 0.00
861 87 0.02
862 11 0.00
863 3 0.00
864 1 0.00
866 46 0.01
867 189 0.04
868 4 0.00
869 3 0.00
870 111 0.02
871 1 0.00
872 3 0.00
873 4 0.00
874 9 0.00
875 3 0.00
876 2 0.00
877 4 0.00
878 172 0.04
879 71 0.01
880 170 0.03
881 166 0.03
882 389 0.08
883 15 0.00
884 47 0.01
885 5 0.00
886 462 0.10
887 183 0.04
888 369 0.08
889 332 0.07
890 32 0.01
891 1 0.00
892 3 0.00
893 1 0.00
894 1 0.00
895 9 0.00
896 128 0.03
897 2 0.00
898 264 0.05
899 10 0.00
900 357 0.07
901 275 0.06
902 130 0.03
903 11 0.00
904 2 0.00
905 189 0.04
906 65 0.01
907 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (886 bp):
GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
ATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGT
TCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
AGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGACCCCTCCGATCGTCGGAACCC
CAATGCCGTCAGTCAGGTTCTCCGACGATGCTCCGAGGCAAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAAAGAACTCC
GTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGC
TCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATCAGCCAGGTCCCCCTCTGCATGCTACC
GATCCTACTGCCACAACCCTCGGTCCGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAG
CCAACCGACGAAACGAGGATGGGCGGGCGGGCACTACGTCG
Found at i:14939238 original size:26 final size:26
Alignment explanation
Indices: 14939199--14939251 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
14939189 CCTGTCCGAT
14939199 CTTAGACTTGGAATGAACTCCATATG
1 CTTAGACTTGGAATGAACTCCATATG
*
14939225 CTTAGAC-TGCGAATGAACTCTATATG
1 CTTAGACTTG-GAATGAACTCCATATG
14939251 C
1 C
14939252 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 2 0.08
26 23 0.92
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (26 bp):
CTTAGACTTGGAATGAACTCCATATG
Found at i:14940118 original size:26 final size:26
Alignment explanation
Indices: 14940089--14940139 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
14940079 TGGTCCGATC
* * *
14940089 TTAGACTGGGATTGAACTCTGTATGT
1 TTAGACTGGGAATAAACTCCGTATGT
14940115 TTAGACTGGGAATAAACTCCGTATG
1 TTAGACTGGGAATAAACTCCGTATG
14940140 CCTAAGTCAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.14, G:0.25, T:0.33
Consensus pattern (26 bp):
TTAGACTGGGAATAAACTCCGTATGT
Found at i:14942480 original size:717 final size:706
Alignment explanation
Indices: 14940799--14942532 Score: 2351
Period size: 717 Copynumber: 2.5 Consensus size: 706
14940789 GCCGTAACCC
* * * * *
14940799 TCCGATCTTAGACT-GGACTGAACTTCATATGCCTAAGCCAACCGACCAAACGAGCGGGCGGGCA
1 TCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGCAGG-AGGCA
* * * * ** * * * *
14940863 AGCAGGCAGGCACAACATCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATTGAT-A-GT--TA-
65 GGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAG
*
14940923 ----G-----GTACATCTTCATATTTCTACGTGCCAA-AGCCATTTTTATGGCTTGTAAATTCAT
130 GTGGGTTTACGTACATCTTCATATTTCTACATGCCAATA-CCATTTTTATGGCTTGTAAATTCAT
* * *
14940978 ACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGAAGACTCATTTTCTATTTTCCAAG
194 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCATTTTCTATTTTTCATG
* * *
14941043 A-TTTTAAAACTTTTTGCGGTCCGGGATTTTTTAAAA-TTTTTCGGAAGGATTTTTAGCCCCAAA
259 ATTTTTGAAACTTTTTGCGGTTCGGG-TTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAA
** * *
14941106 CTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTCAGCTAAAAATTGAAGTG
323 CTTCCTAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAATTGAAGTG
14941171 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
388 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
14941236 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
453 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
14941301 GGGGCCAAAATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGATCT
518 GGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCG
* **
14941366 CCAGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGACGAAAA
583 CCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCTGACGATGGTGCCCCGACGAAAA
* * * * *
14941431 AAAATATGGCACCAGCACATGGCCGAGCCCGGCATGTGCTGCTGCAACCTTCTGCCTGG
648 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCTGCCTGA
14941490 TCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGCAGGCAGGCA
1 TCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGCAGG-AGGCA
* * * * * * * *
14941555 GGCGGGGGGGCACTACGTCTGCTAGAGAGACGGGATGCGCAGGCTATGGATCGCTAGGGTGGTAG
65 GGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAG
* * * ** *
14941620 GTGGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGTCATTTTTATGGCTTGTAAATTCGTA
130 GTGGGTTTACGTACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATA
* * *
14941685 CAATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCGTGA
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCATTTTCTATTTTTCATGA
* *
14941750 TTTTTGAAACTTTTTGCGGTTCGGGTTTTTTAAAATTTTTTCGGAAGGGGTTTTAGTCCCAAACT
260 TTTTTGAAACTTTTTGCGGTTCGGGTTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACT
14941815 TCCTAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTG
325 TCCTAAACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAA-TTGAAGTG
* *
14941880 TACAAGATTTTGTGGCCATTTGAAAAACGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCA
388 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTT-AGACACTTTAATGGCTACTGGCA
14941945 GC-AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
452 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
14942009 GGGGGCCAACATAAGGGCCAAGTCCCAGCACCCATCGCACATCATGTGCGCACACCCACCCGGCC
517 GGGGGCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CA--CA--C--CC
* *
14942074 CCCTCGATCGCCAGAACCCCAATGTCGTCGGTCAAGTTCTCCGACGATGCTCTGACGATGGTGCC
574 CCC-CGATCGCCAGAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCTGACGATGGTGCC
* * * * * * *
14942139 CCGACGAAGAAAAATACGGCCCCAGCACATGCCCGAGTCCATCATGTGCTGCCGTAACCCTTGTT
638 CCGACGAAAAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CCTTCTG
14942204 CC-GA
702 CCTGA
* * * * * *
14942208 TCCGATCTTAGAGTGGGAATGAACTTCGTCTGCCTAAGCCAACTGACGAAACGAGCAATG-GGCT
1 TCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGC-AGGAGGCA
* *
14942272 GGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAAGGTGGTAG
65 GGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAG
* * * *
14942337 GTGGGTTTACGTACATCTTCCTAATTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCACA
130 GTGGGTTTACGTACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATA
* *
14942402 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTTATGA
195 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCATTTTCTATTTTTCATGA
* * ** *
14942467 TTTTTGAAACTTTTTGCAGTTCGAGATTTTTTAAAAATTTTTTC-GAATTAGTTTTGGCCCCAAA
260 TTTTTGAAACTTTTTGCGGTTCG-GGTTTTTT-AAAATTTTTTCGGAAGGAGTTTTAGCCCCAAA
14942531 CT
323 CT
14942533 AAAATTTTAA
Statistics
Matches: 909, Mismatches: 100, Indels: 41
0.87 0.10 0.04
Matches are distributed among these distances:
691 14 0.02
692 86 0.09
694 2 0.00
696 2 0.00
701 1 0.00
706 117 0.13
707 81 0.09
708 18 0.02
709 156 0.17
710 25 0.03
711 2 0.00
713 2 0.00
715 1 0.00
717 202 0.22
718 180 0.20
719 20 0.02
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (706 bp):
TCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGCAGGAGGCAG
GCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAAGGTGGTAGG
TGGGTTTACGTACATCTTCATATTTCTACATGCCAATACCATTTTTATGGCTTGTAAATTCATAC
AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAAGACTCATTTTCTATTTTTCATGAT
TTTTGAAACTTTTTGCGGTTCGGGTTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTT
CCTAAACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAATTGAAGTGTAC
AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAA
ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
GCCAAAATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGATCGCCA
GAACCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCTGACGATGGTGCCCCGACGAAAAAAA
ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCTTCTGCCTGA
Found at i:14942545 original size:8 final size:8
Alignment explanation
Indices: 14942532--14942562 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
14942522 GGCCCCAAAC
14942532 TAAAATTT
1 TAAAATTT
14942540 TAAAATTT
1 TAAAATTT
14942548 TAAAATTT
1 TAAAATTT
14942556 TAAAATT
1 TAAAATT
14942563 CCATATGCTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (8 bp):
TAAAATTT
Found at i:14944194 original size:26 final size:26
Alignment explanation
Indices: 14944165--14944215 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
14944155 GGTCCGATCT
*
14944165 TAGACTGGGAATGAACTCCGTATGCG
1 TAGACTGGGAATGAACTCCATATGCG
14944191 TAGACTGGGAATGAACTCCATATGC
1 TAGACTGGGAATGAACTCCATATGC
14944216 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCATATGCG
Found at i:14945964 original size:26 final size:26
Alignment explanation
Indices: 14945935--14945987 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14945925 CCAGTCCGAT
14945935 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
14945961 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14945987 C
1 C
14945988 CTAAGTCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14946429 original size:889 final size:891
Alignment explanation
Indices: 14943436--14951871 Score: 9661
Period size: 860 Copynumber: 9.5 Consensus size: 891
14943426 ACCCTTGGTT
* * *
14943436 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAGCGACCAAATGAGCGGGCGC
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAA--A-C--GAG-
*
14943501 ACGGGCGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
59 -CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
14943566 TAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCA-TTTTAGAGGCTTGTAAATT
123 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTA-TGG--TGTAAATT
*
14943630 CATGCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
185 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* ** * *
14943695 ACAATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGCAAGGAGTTTTGGCCCC
250 ACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * * *
14943760 AAACTTGGTAGACGTGATCCTTGT-TTCTTTGTTGGCATGCAGAAAACAATTCAGCAAAAAATTC
315 AAACTTGGTAGACGTGATCCTTGTATT-TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* * *
14943824 GAAGTGTACAAGATTTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTAT
379 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
14943889 TGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCTCAAGGTTTGATGAG
444 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
*
14943954 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCTC
509 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCC
* * * * * * *
14944018 CAGCCCCCTCGATCGCCAGAACCCCAATGTCACCGATCAGGTTCTCCGACGATGATCCGATGATG
573 CGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCG-TCAGGTTCTCCGACGATGCTCCGACGATG
* * * * * *
14944083 GTGCACCGGTGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCC
636 GTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCC
* * *
14944148 TTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCGTAGACTGGGAATGAACTCCATA
701 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * *
14944213 TGCCTAAGTCAACCAATGAAACGAGTGTGCGAGCCCTCAGCCGGCCAGAGGGGCGGGATGCGTAA
766 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * ** * * * * * ** *
14944278 GCCAGGGATTGGTTGGGTCCCCCTCTGTGCGCTGCTGATCCTACTACCACAACCCTTAATT
831 GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATC
* * *
14944339 CGGTCTGATCTTACACTGGGAATTAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCAAGCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG-----ACGA--AA-CGA
** * * * * *
14944404 GCGGGCGGGCGGGCACTACATCGACTAGAGAGACGAGATGCGCAGGTCGTGGATCGATAGGGTGG
58 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* ** *
14944469 TAGGTTGGCCTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT-G-G------C-T
123 TAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGTGTAAATTCAT
* * *
14944525 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTTGTTTTCTAGTTTTCACG
188 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
14944590 ATTTTTAAAACTTTTTGCGGTTCTGGATTTTTTAAAA-TTTTTCGGAAATGGAGTTTTTTGG-CC
253 ATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGG-AA-GGAG--TTTTGGCCC
* * *
14944653 CACAACTT-GTAGACATGAT-CTGGTATTTTT-TT----TG-GC------A-T--GC-----ACT
314 CA-AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
14944696 CGAAGTGTACAAGAATTTTTGTG-CCATTTGAAAAAAGT-TCCCCATTTCAGACACTTTAATGGC
378 CGAAGTGTACAAG-A-TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
14944759 TACTGGTAGCAAACCTGTAAAATCTAAAAAGCTC-TTAAGGGGGTGTGAG-T-TCGAGGTTTGAT
441 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* * * *
14944821 GAAGGGATAGGGGGCCAATATAAGGGCCATGGTACCATCACCCATCGCAACTTCATGTGTGGCAC
506 G-AGGGATAGGGGGCCAATATAAGGGCCA-AGTACCAGCA-CCATCGC-ACATCATGTG-CGCAC
* * *
14944886 AACGCCCGCCGGCCCCCCCGATCGTCGGAA-CCCAATGCCGTCGTCAGGTTTCTTCGACGATGCT
566 -AC-CCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGTCAGG-TTCTCCGACGATGCT
* * *
14944950 CCGA--ACTGGTG-CCCGGTGAAGAAAAATGA-GGCACTAGCACAATGCCCG-GCCCAGCATGTG
627 CCGACGA-TGGTGCCCCGATGAAGAAAAAT-ACGGCACCAGCAC-ATGCCCGAGCCTAGCATGTG
* * *
14945010 CCTGCCGCAACGCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTGTGCTTAGACCGA
689 -CTGCCGCAAC-CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
* * * *
14945075 GAATGAACTCCGTATGCCTAAGTCAA-CCACGAAACGCGCATGCGAGCGATCAGCCGGCCAGAGG
752 GAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGG
* * * * * *
14945139 GGTGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCATCTACGTGCTGTCGATCTTGCTACTGCA
817 GGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCA
14945204 ACCCTCGATC
882 ACCCTCGATC
** * *
14945214 CGGTCCAATCTTAGACTAGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCGG
* **
14945279 GCGGGCGTGCACTACGTTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
62 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
14945344 TGGTTTTAGGCACGTCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTTTAAATTCTTAC
127 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG--TGTAAATTCATAC
* *
14945409 AATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGTCGACTCGTTTTCTATTTTTCACGAT
190 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *** * *
14945474 TTTCGAAACCTTTTGCAGTTCCAAATTTTTTTAAAATTTTTTTGGAGGGAGTTTTGGCCCCAAAC
255 TTTTGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * *
14945539 TTGGTAGACGTGATCCTTGTA-TTTTGTTCGCATGCACAAAACAATTTAGCTAAAAACTCAAAGT
319 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
14945603 GTACAACATTTTGTGACCATTTGAAAAAAATGTCCGCATTTCATACACTTTAATGGCTACTGGCA
384 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* *
14945668 GCAAACCGGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
449 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
14945733 -GGGGCCAATATAAGGGCCAAGTACCAGCA-CATCGCACATCATGTGCGTACACCCCCCCGGCCC
514 GGGGGCCAATATAAGGGCCAAGTACCAGCACCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* * * ** *
14945796 CCACGATC-ACTGGAACCCTAAAGCAACCAGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCC
579 CC-CGATCGTC-GGAACCCCAATGCCGCC-GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * * *
14945860 CCGATGAAGAAAAATACGGCACCAGAACATGCCCGAGCCTGGCATGTGCTGTCGCAACCCTCGAT
641 CCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGT
* *
14945925 CCAGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTATACTGGGAATGAACTCCGTATGCCT
706 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
14945990 AAGTCAAACCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGTCGAGATGCACAAGCTGG
771 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * *
14946055 GGATCGGTCGGGTCCCCCTCTGTGTGCTACCAATCCTGCTGCCGCAACCCTCGATC
836 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATC
* ** * *
14946111 CGATCCAAT-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAGGAAATGAGCGGGCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * *
14946175 GTGGGCACTATGCCTGCCAGAGAGACGGGATGCGCAAGCCGGGGATCGATAGGGTGGTAGGTGGG
66 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
14946240 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGG-GTAAATTCATACAATGTT
131 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGTGTAAATTCATACAATGGT
* **
14946304 CCCTTAAGCCTTCACGTGAAGTTTCAGGGCAAGACGACTCGTTTTCTATTTTTCAAAATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* ** * *
14946369 AACCTTTTATGGTTCGGGATTTTTTTAAAATTGTTTCGGAAGGAGTTTTGGCCCCAAACTTAGTA
261 AACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
14946434 GACGTGATCCCTT-TATTTTTTTTGGCATGCACAAAAAAATTCGGCTAAAAACTCGAAGTGTACA
325 GACGTGAT-CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
14946498 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
14946563 CCTGTAAAATCT-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGCATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
14946627 CCAATATAAGGGACAAGTACCAGCACCCATAGCACATCATGTGCGCACA-CCCCCCGACCCCCCG
519 CCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * * *
14946691 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTTCGACGTTGGTG-CCC--T-
583 ATCGTCGGAACCCCAATGCCG-CCGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATG
* * * *
14946752 --------T---G---C-G-A-A-----GAG---A--A----ATGCCGTAACCCTCGATCCGATC
647 AAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * ** * * * *
14946786 CAATCCTAGGTTGGGAATGAACTCCATATGCTTATACTAGGAGTGAACTCCGTATGCCTAAGTCA
712 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
14946851 ACCCACAAAACGAGCGTGAGGGCGCTCAGCCGGCCAGAGGGGCGGGATACGCAAGTCGGGGATCG
777 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * *
14946916 ACCGGATCCCCCTCTACGTGCTGCCAATCCTGCTACCACAACCCTTGATC
842 GCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATC
* * * * *
14946966 CAGTCTGATCTTAGACTGGGAATAAACTCCGTATGCTTAAGCCAATCGATGAAACGAGCGGGCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--
* * *
14947031 GTGGGCGGGCACTACGCCGGTCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGCGTGGTAGG
64 --GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * *
14947096 TGGGTTTAGGTACATCTTCATATTTCTACGTGCCAAAGCCATTTTTATGGCTTCTAAATTCATAC
127 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG--TGTAAATTCATAC
* *
14947161 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGAT
190 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * *
14947226 TTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGG-AGGATTTTTGGCCCC-AACT
255 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
14947289 TTGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGGTAAAAACTCGAAGTG
320 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
14947354 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
385 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
14947419 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAT
450 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
14947484 GAGGCCAATATAATGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
515 GGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* * *
14947549 TCCCGATCGTCGGAATCCCAATGCCGCTGCTCAGGTTCTCCGACGA---T--G-C--TGGTGCCT
579 -CCCGATCGTCGGAACCCCAATGCCGCCG-TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * *
14947606 CGATGAAGAAAAATACGGCACCAGTAAATGCCTGAGCCCAGCTTGTGCTGCCGCAA----C---C
642 CGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTC
14947664 C--T-CGA---T---CT----A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATG-CTC
707 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT-
* * * * *
14947709 AAGTCAACCCACAAAACGAGCGTGCGGGAGCTCAACCGACCAGAGGGGCAGGATGCGCAAGCCGG
771 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * ** * * * *
14947774 GGATCGACTGGGTCCCACTCTGTGTGCTATCGATCCTGTTGCTGCAACCCTTGATC
836 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATC
* * * ** * *
14947830 CTGTTTGATCTTAGACTGGGAATGAACTCCGTATCCCTAAGCCAACCGATAAAATGAGTGGGCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * *
14947895 GCGGGCATTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGG
66 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
14947960 TTTAGGAACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
131 TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG--TGTAAATTCATACAATG
* *
14948025 ATCCCTTAAGCCTTCACGTTAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
** * * * *
14948090 GAATTTTTTTGCGATTTGGGATTTTTTATAATTTTTTCGGAA-GATTTTTTGGCCCCAAACTTGG
259 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTTGGCCCCAAACTTGG
* * * *
14948154 CAGACGTGATCCTTGTATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
323 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
14948219 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTACTGGCTACTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
14948284 ACCTGTAAAATCTCAAATGCTCTTTATGGGGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGCG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
14948349 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCGCCCCTCGGCCCC
518 GCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACC-CCCC-CGG-CCC
* *
14948414 CCCGATCGTCGGAACCCCAATGCCGCCTGTCAGGTTCTCC-AGCGATGCTCCGGCGATGGTACCC
579 CCCGATCGTCGGAACCCCAATGCCGCC-GTCAGGTTCTCCGA-CGATGCTCCGACGATGGTGCCC
** ** * ** * * *
14948478 CGGCGAAGAAAAATTTGACATTAGCACATGCCCAAGCCCAGCATGTGCTCCCGCAACCCTCGGTC
642 CGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTC
* * * * *
14948543 TGGTCTGACCTTAGACTGGGAATGAACTCCGTACGCTTAGACTGGG-ATGAACTCCATATGCCTA
707 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* * * * * * *
14948607 AGTTAACCCACAAAATGAGCGTGTGGGCGCTCAGCCAGCCAGAGGGGTGGGATGCGCAAGCCAGG
772 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
** * * * * * *
14948672 GATCAACCGGGTTCCCCTCTGTGTGCTGCCAATCCTACTGCCACAACCCTCG-TC
837 GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATC
** * *
14948726 CGGTCCCATCTTAGACTGGGAATTAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GC--
* * * *
14948791 GCAGGCGGGCGGGCACTACTG-CGCCCAGAGAGACAGGATGTGCAAGCCATGGATCGATAGGGTG
60 G--GGCGGGCGGGCACTAC-GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * * * *
14948855 GTAGTTGGGTTTAGGTACATCTTCAAATTTCTATGTGCCAATGCCACTTTTATGGCTTGTAAATT
122 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG--TGTAAATT
*
14948920 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT-TATTTTTC
185 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * *
14948984 ACGATTTTTAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGG-AGGATTTTTGGCCCC
250 ACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * *
14949048 -AACTTTGTAGTCGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGGTAAAAACTCG
315 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* * *
14949112 AAGTGTACAAGATTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCTGACACTTTACTGGCTACT
380 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
14949177 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTT-AGGGGAGTGTGAGTTCTTGAGGTTTGATGAG
445 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTGAGTTCTCGAGGTTTGATGAG
* * **
14949241 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCGTCACACATCATGTGAACACACCCCCC
509 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCC
* * *
14949306 CGGCCCCCTTGATCGTCGGAACCCTAATGCCGCCGGTCAAG-T-T----C--T-CT--GACGATG
573 CGGCCCCC-CGATCGTCGGAACCCCAATGCCGCC-GTCAGGTTCTCCGACGATGCTCCGACGATG
* ** * * **
14949360 GTGCCCTGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTATCGCAACCC
636 GTGCCCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCC
* * * * * * *
14949425 TCTGTCTGGTCTGATCTTATATTTGGAATGAACTCCGTATGCTTAGACTGGAAATGAACTCCGTA
701 TCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * *
14949490 TGCCTAAGTTAACCCACGAAACAAGAGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
766 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * * * *
14949555 GCCGAGGATCGACCGGATCCCCCTCTACGTGCTGTCGATCCTGCTGCCACAAACCTCGGTC
831 GCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATC
*
14949616 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGG
* *
14949681 GCGGGCGGGCACTACGCCGGTCAGAGAGACGGGAAGCGCAAGCCGTGGATCGATAGGGTGGTAGG
62 GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * *
14949746 TGGGCTTAGGCACATCTTCATATTTCTATGTGCCAATACCATTTTTATGGCTTGCAAATTCATAC
127 TGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG--TGTAAATTCATAC
* **
14949811 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATTAT
190 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
* * * * *
14949876 TTTTGAAACTATTTGCGGCTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAGCT
255 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * *
14949941 TGGAAGACATGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTG
320 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
* * *
14950006 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTATTGGTAG
385 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* ** *
14950071 CAAA-CTGTAAAATCTCAAATGCTCTTTAAAGGGGCATGAGTTCTTGAGGTTTGATGAGGGATAG
450 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
** * *
14950135 GTAGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCCGAT
515 GGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACA--CCCCCCCG-G
* * *
14950200 CGCCCCGATCGCCGGAACCCCAATGCCGTCGATCAGGTTCTCCGACGATGCTCCGACGATGGTGC
576 CCCCCCGATCGTCGGAACCCCAATGCCGCCG-TCAGGTTCTCCGACGATGCTCCGACGATGGTGC
* ** * * *
14950265 CCCGACGAAGAAAAATGTGGTACCAGCACATGCCCAAGCCTAGCATGTGCTGCTGCAA-CC-C--
640 CCCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGG
* *
14950326 T-C-G---G----T---CT----A-G---TCCG-AT-CTTAGACTGGGAATGAACTCTGTATGCT
705 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * *
14950369 TAAGTCAACCCACGAAACAAGCGTGCGGGAGGTCAACTGGCCAGAGGGGCGGGATGCGCAAGCCG
770 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * **
14950434 GGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAATGCTCGATC
835 GGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATC
* *
14950491 CGATTTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
* * * * * * *
14950552 GCGGGCACAACGCCGGCTC-GAGAGATGAGATGTGCAAGCCGTGGATCAACAGGGTTGTAGGTGG
66 GCGGGCACTACGCCGGC-CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* * *
14950616 GTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
130 GTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGG--TGTAAATTCATACAAT
* **
14950681 GGTCCCTTGAGCCTTCTTGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATC-ATTT
193 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-CGATTT
** * * * * *
14950745 TCAAAACTTTCTCCAGTTCGGGA-TTTTTAAAATTTTTTTCGGAAGGATTTTTGGCCCTAAACTT
257 TTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * * * *
14950809 GGTAGATGTGATCCTTGTATTTTTTTTAGCGTGCACAAAAAAATTCAGCTAAAACCTCGAAATGT
321 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* *
14950874 AGAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATGGCTACTGGCAGC
386 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
14950939 AAACCTGTAAAATCTCAAATCCTCTTTAAGGGGGTGTGAGTTCTC-ACGGTTTGATGAGGGATAT
451 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GGTTTGATGAGGGATA-
* *
14951003 TGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGTACA-CCCCCCGGCC
514 GGGGGCCAATATAAGGGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACACCCCCCCGGCC
* * *
14951067 CCCTCGATTGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCAATGGTG-C
578 CCC-CGATCGTCGGAACCCCAATGCCGCC-GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* * * *
14951131 CCGATGAAGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCACGTGCTGTCGCAACCCTCGGT
641 CCGATGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGT
* * ** * *
14951196 CTGATCCGATCTTAGACTTTGAATGAACTCCGTATGCTTAGACTGCGAATGAACTCCGTAT--CA
706 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * *
14951259 AAGTTAACCCACGAAAACGAAACGTGCGGGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCT
771 AAGTCAACCCACG-AAACG-AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * * * *
14951324 GGAGATCGATCGGGTCCCCCTCTACGTGTTGCTGATCCTACTATCGCAACCCTC-AGTC
834 GGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGA-TC
* ** * * *
14951382 CTGTCCAATCTTAGACTGGGAATGAACTCCGTACGCCCTAAGACCAACCGACGTCATGAGCGGGC
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATG-CCTAAG-CCAACCGACG--A--AACGAGC
* * * *
14951447 GGGCGGACGGGCACT-CGCGCGGCTAGCGAGA-GGGAATGCGTAAG-CGTGGATCGATAGGGTGG
60 GGGCGGGCGGGCACTACGC-CGGCCAGAGAGACGGG-ATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
14951509 TAGGTGGGTTTAGGCACATCCTTCATATTTCTGCATGCCCAA-GACATTTTTATGCTTGTAAATT
123 TAGGTGGGTTTAGGCACAT-CTTCATATTTCTACGTG-CCAATGCCATTTTTATG-GTGTAAATT
* * * *
14951573 CATACAATGGTCAC-TAA-CCTTCACATGAACAGTTTCATGGCAAGA--ACTCATTTTTTATTTT
185 CATACAATGGTCCCTTAAGCCTTCACGTG-A-AGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * **
14951634 TAATGATTTTTGAAACTTTTTGCGGTTTGACATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
248 TCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* * *
14951699 CCAAACTTGGTAGGCGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACT
313 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
*
14951764 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTA
378 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
14951829 CTGACAGCAAACATATAAAATCTCAAATGCTCTTTAAGCGGGG
443 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGG
14951872 ATCGGTCGGG
Statistics
Matches: 6468, Mismatches: 790, Indels: 554
0.83 0.10 0.07
Matches are distributed among these distances:
855 182 0.03
856 50 0.01
857 1 0.00
858 2 0.00
859 5 0.00
860 458 0.07
861 121 0.02
862 268 0.04
863 136 0.02
864 224 0.03
865 60 0.01
866 73 0.01
867 338 0.05
868 53 0.01
869 54 0.01
870 19 0.00
871 137 0.02
872 81 0.01
873 80 0.01
874 59 0.01
875 348 0.05
876 104 0.02
877 21 0.00
878 9 0.00
879 1 0.00
880 15 0.00
881 28 0.00
882 94 0.01
883 13 0.00
884 8 0.00
885 4 0.00
886 169 0.03
887 51 0.01
888 223 0.03
889 448 0.07
890 299 0.05
891 164 0.03
892 236 0.04
893 26 0.00
894 23 0.00
895 31 0.00
896 193 0.03
897 247 0.04
898 281 0.04
899 64 0.01
900 101 0.02
901 420 0.06
902 52 0.01
903 200 0.03
904 184 0.03
905 3 0.00
907 5 0.00
908 1 0.00
909 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (891 bp):
CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG
GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
TTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATC
GTCGGAACCCCAATGCCGCCGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGA
AAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCG
GGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGATC
Found at i:14951235 original size:26 final size:26
Alignment explanation
Indices: 14951206--14951256 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
14951196 CTGATCCGAT
**
14951206 CTTAGACTTTGAATGAACTCCGTATG
1 CTTAGACTGCGAATGAACTCCGTATG
14951232 CTTAGACTGCGAATGAACTCCGTAT
1 CTTAGACTGCGAATGAACTCCGTAT
14951257 CAAAGTTAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (26 bp):
CTTAGACTGCGAATGAACTCCGTATG
Found at i:14953652 original size:26 final size:26
Alignment explanation
Indices: 14953616--14953668 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14953606 CCGGTCCAAT
*
14953616 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14953642 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14953668 C
1 C
14953669 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14956275 original size:26 final size:26
Alignment explanation
Indices: 14956238--14956290 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14956228 TCGGTTCGAT
*
14956238 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14956264 CTTAGACAGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
14956290 C
1 C
14956291 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:14957172 original size:26 final size:24
Alignment explanation
Indices: 14957136--14957186 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 24
14957126 CTTGGTCCTA
14957136 TCCGATGTTAGACTGGGAATGAAC
1 TCCGATGTTAGACTGGGAATGAAC
14957160 TCCGTATGCTTAGACTGGGAATGAAC
1 TCCG-ATG-TTAGACTGGGAATGAAC
14957186 T
1 T
14957187 TCATATGCCT
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 4 0.16
25 3 0.12
26 18 0.72
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.27
Consensus pattern (24 bp):
TCCGATGTTAGACTGGGAATGAAC
Found at i:14957193 original size:26 final size:26
Alignment explanation
Indices: 14957143--14957194 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
14957133 CTATCCGATG
*
14957143 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
*
14957169 TTAGACTGGGAATGAACTTCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
14957195 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:14957452 original size:904 final size:895
Alignment explanation
Indices: 14955516--14958070 Score: 3482
Period size: 904 Copynumber: 2.8 Consensus size: 895
14955506 GTTCGGTTCG
* * * *
14955516 ATCTTAGACTGGGAATG-ACTTCACATGCCTAAGCCAACCGATGAAACGAGCGGGTGGGCAGGCG
1 ATCTTAGACTGGGAATGAAC-TC-CGTGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * *
14955580 GGTGGGCACTACATCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG-TG
64 GGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTG
* * * * *
14955644 TGTTTAGGCACATCTTCATATTTCTATGTTTCAATGCCATTTTCATGGCTTTTAAATTCATACAA
129 -GTTTAGGCAAATCTTCATATTT-T-TGTTGCAATGCCATTTTTATGGCTTGTAAAATCATACAA
* * *
14955709 TGGTCTCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
191 TGGCCT-TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA-TT
* * * *
14955774 TTGAATAA-TTTTAT-GGTTCGAGATTTTTTAAAA-TTTTCTCAGAAGGAGTTTGGGCCCCAAAC
254 TTCAA-AACTTTT-TCGGTTCGAGATTTTTTAAAATTTTTTTGA-AAGGAGTTTTGGCCCCAAAC
* * * *
14955836 TTGGTAGACATGATCCTTGTA-TTTTGATGGCATGCACAAAAAAATTTAGCCAAAAACTCGAAGT
316 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * * *
14955900 GTACAAGATTTTTTGCCCATTTGAAAAAAGTGTTCCCATTTCGGACACTTTAGTGGCTACTGGCA
381 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * *
14955965 GCAAACCTGTAAAATTTCAAATCCTCTTTAAGGGGGTGTGCGTTCTCGAGGTTTGATGAGGGATA
446 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATA
* **
14956030 GGGGGCCAACATAAGGGCCAAGTACCAGCACCCATCATGCATCATGTGCGCACACCCCCCCGCCG
511 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA---CCCC-CCG
** *
14956095 GCCCCCCGATCG-TCGGAA-CCCAATGCCGCTGGTCAGGTTCTCCGACGATGCTCTGGCGATGGT
572 GCCCCCCGATCGCT-GGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGT
*
14956158 GCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACGCAACCC
636 GCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCA--CAACCC
* * ** * *
14956223 TCAATTCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCGTA
699 T-TAGTCTATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCATA
* * * *
14956288 TGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCACTTAGCCGACCAGAGGGGCAGGACGCGCAA
763 TGCCTAAGTCAACCCACGAAACGAGCGTGCCGGCACTCAGCCGACCAGAGAGGCAGGACGCGCAA
* * * * * *
14956353 GCCGAGGATCTGTCGGGTCCCCCTCTGCGTGCTGCCAATCCTACTATCACAACCCTTGGTCCAGT
828 GCCGAGGATCAGCCGGGTCCCCCTCTGCATGATACCAATCCTACTATCACAACCCTCGGTCCAGT
* *
14956418 TCG
893 CCA
* * *
14956421 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGTGCGTGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCG--TGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* *
14956486 GGCGGGCACTATGTCGGCCAGAGAGATGTGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTG
64 GGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTG
* * *
14956551 GTTTAGGCAAATCTTCATATTTTTGTGTGCAAATACCATTTTTACGGCTTGTAAAGTCATACAAT
129 GTTTAGGCAAATCTTCATATTTTTGT-TGC-AATGCCATTTTTATGGCTTGTAAAATCATACAAT
14956616 GGACCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
192 GG-CCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
*
14956681 CAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACCTGG
256 CAAAACTTTTT-CGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGG
* *
14956746 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTAC
320 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
14956811 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
385 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
14956876 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGG
450 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGG
*
14956941 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACACCATGTGCGCACACCCCCCGGCCCCCCC
515 GCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGG-CCCCCC
* ** **
14957006 AATCGCTGGAACCCCAATGCCGCCAGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCTTGGC
579 GATCGCTGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGC
* * *
14957071 GAAGAAAAATGCGGCACCACCACATG-CTCGAGCCCTAGCATTTGCTGCCACAACCCTTGGTCCT
644 GAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCC-AGCATGTGCTGCCACAACCCTTAGT-CT
* * *
14957135 ATCCGATGTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCATATGCCTAAG
706 ATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCATATGCCTAAG
* ** * ** * *
14957200 TCAACCCATGAAACGAGCGTGCCGGTGCTCAGCCGGCCAGAGAGGTGGGATGCGTAAGCC-AGGG
771 TCAACCCACGAAACGAGCGTGCCGGCACTCAGCCGACCAGAGAGGCAGGACGCGCAAGCCGA-GG
* * * ** **
14957264 ATCAGCCGGGTCCCCCTCTGCATGATACCGATCCTGCTGGT-GTAACCCTCGGTCTGGTCCA
835 ATCAGCCGGGTCCCCCTCTGCATGATACCAATCCTACT-ATCACAACCCTCGGTCCAGTCCA
14957325 ATCTTAGACTGGGAATGAACTCCGTCCGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGT--GCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCG
* * * *
14957390 GGCGGGCGCTACGTCGGCCAGAGAAATGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGG
64 GGCGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTG
* * * *
14957455 GTTTAGGCACAA-CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGCAAAATCGTACAA
129 GTTTAGGCA-AATCTTCATATTTTTG-TTG-CAATGCCATTTTTATGGCTTGTAAAATCATACAA
* ** *
14957519 TGCTCCCCTAAGCCTTCACGTGGAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
191 TG-GCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * *
14957584 TTGAAACTTTTTACAGTTCGAGATTTTTTAAAATTTTTTCGAAA-GAGTTTTGGCCCCAAACTTG
255 TCAAAACTTTTT-CGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTG
* *
14957648 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTTC-GCTAAAAAGTCGAAGTGT
319 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA-TTCAGCTAAAAACTCGAAGTGT
*
14957712 ACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
383 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
14957777 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTAAAGAGGGATAGG
448 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGG
*
14957842 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCAGGCCCC
513 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCC-GGCCCC
* * *
14957907 CCGATCGCTGGAACCCCAATGCCGTCAGTCAGGTTCTCTGACGATGCTCCGGTGATGGTGCCCCG
577 CCGATCGCTGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCG
* * * **** *
14957972 ACGAAGAAAAATGTGGCACCAGCACATGCCTGAGCCCAGCATGTACTGTTGTAACCCTTAGTTTG
642 GCGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTTAGTCT-
*
14958037 ATCCAATCTTAGACTGGGAATGAACTCCGTATGC
706 ATCCGATCTTAGACTGGGAATGAACTCCGTATGC
14958071 CTAAGTCAAC
Statistics
Matches: 1469, Mismatches: 151, Indels: 63
0.87 0.09 0.04
Matches are distributed among these distances:
901 1 0.00
902 51 0.03
903 356 0.24
904 462 0.31
905 113 0.08
906 267 0.18
907 219 0.15
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (895 bp):
ATCTTAGACTGGGAATGAACTCCGTGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
CGGGCACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTTGGT
TTAGGCAAATCTTCATATTTTTGTTGCAATGCCATTTTTATGGCTTGTAAAATCATACAATGGCC
TTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAA
CTTTTTCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTAATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCT
GGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCGAAGAAA
AATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAACCCTTAGTCTATCCGATCTT
AGACTGGGAATGAACTCCGTATGCTTAGACAGGGAATGAACTCCATATGCCTAAGTCAACCCACG
AAACGAGCGTGCCGGCACTCAGCCGACCAGAGAGGCAGGACGCGCAAGCCGAGGATCAGCCGGGT
CCCCCTCTGCATGATACCAATCCTACTATCACAACCCTCGGTCCAGTCCA
Found at i:14960018 original size:8 final size:8
Alignment explanation
Indices: 14960005--14960048 Score: 65
Period size: 8 Copynumber: 5.8 Consensus size: 8
14959995 TTTGAATCTC
14960005 TTTTTTCA
1 TTTTTTCA
14960013 TTTTTTCA
1 TTTTTTCA
*
14960021 TTTTTCCA
1 TTTTTTCA
14960029 TTTTTTC-
1 TTTTTTCA
14960036 TTTTTTC-
1 TTTTTTCA
14960043 TTTTTT
1 TTTTTT
14960049 TTTTTCTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
7 13 0.38
8 21 0.62
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTTTCA
Found at i:14960024 original size:7 final size:7
Alignment explanation
Indices: 14960006--14960076 Score: 51
Period size: 6 Copynumber: 10.1 Consensus size: 7
14959996 TTGAATCTCT
14960006 TTTTTCA
1 TTTTTCA
14960013 TTTTTTCA
1 -TTTTTCA
14960021 TTTTTCCA
1 TTTTT-CA
*
14960029 TTTTTTCT
1 -TTTTTCA
14960037 TTTTTC-
1 TTTTTCA
*
14960043 TTTTT-T
1 TTTTTCA
14960049 TTTTTC-
1 TTTTTCA
*
14960055 TTTTT-T
1 TTTTTCA
14960061 TTTTCTCA
1 TTTT-TCA
14960069 TTTTTCA
1 TTTTTCA
14960076 T
1 T
14960077 CTATTGTTGA
Statistics
Matches: 54, Mismatches: 2, Indels: 15
0.76 0.03 0.21
Matches are distributed among these distances:
6 19 0.35
7 16 0.30
8 14 0.26
9 5 0.09
ACGTcount: A:0.07, C:0.14, G:0.00, T:0.79
Consensus pattern (7 bp):
TTTTTCA
Found at i:14960039 original size:23 final size:23
Alignment explanation
Indices: 14960013--14960060 Score: 68
Period size: 19 Copynumber: 2.3 Consensus size: 23
14960003 TCTTTTTTCA
14960013 TTTTTTCATTTTTCCATTTTTTC
1 TTTTTTCATTTTTCCATTTTTTC
14960036 TTTTTTC-TTTTT---TTTTTTC
1 TTTTTTCATTTTTCCATTTTTTC
14960055 TTTTTT
1 TTTTTT
14960061 TTTTCTCATT
Statistics
Matches: 25, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
19 13 0.52
22 5 0.20
23 7 0.28
ACGTcount: A:0.04, C:0.12, G:0.00, T:0.83
Consensus pattern (23 bp):
TTTTTTCATTTTTCCATTTTTTC
Found at i:14960048 original size:16 final size:16
Alignment explanation
Indices: 14960003--14960066 Score: 64
Period size: 15 Copynumber: 4.2 Consensus size: 16
14959993 AATTTGAATC
14960003 TCTTTTTTC-ATTTTT
1 TCTTTTTTCTATTTTT
* *
14960018 TCATTTTTCCATTTTT
1 TCTTTTTTCTATTTTT
14960034 TCTTTTTTCT-TTTTT
1 TCTTTTTTCTATTTTT
*
14960049 T-TTTTCTT-TTTTTTT
1 TCTTTT-TTCTATTTTT
14960064 TCT
1 TCT
14960067 CATTTTTCAT
Statistics
Matches: 42, Mismatches: 3, Indels: 7
0.81 0.06 0.13
Matches are distributed among these distances:
14 5 0.12
15 22 0.52
16 15 0.36
ACGTcount: A:0.05, C:0.14, G:0.00, T:0.81
Consensus pattern (16 bp):
TCTTTTTTCTATTTTT
Found at i:14960049 original size:8 final size:8
Alignment explanation
Indices: 14960005--14960066 Score: 58
Period size: 8 Copynumber: 8.0 Consensus size: 8
14959995 TTTGAATCTC
*
14960005 TTTTTTCA
1 TTTTTTCT
*
14960013 TTTTTTCA
1 TTTTTTCT
* *
14960021 TTTTTCCA
1 TTTTTTCT
14960029 TTTTTTC-
1 TTTTTTCT
14960036 TTTTTTCT
1 TTTTTTCT
14960044 TTTTTT-T
1 TTTTTTCT
14960051 TTTCTTT-T
1 TTT-TTTCT
14960059 TTTTTTCT
1 TTTTTTCT
14960067 CATTTTTCAT
Statistics
Matches: 49, Mismatches: 2, Indels: 6
0.86 0.04 0.11
Matches are distributed among these distances:
7 14 0.29
8 35 0.71
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.82
Consensus pattern (8 bp):
TTTTTTCT
Found at i:14960051 original size:12 final size:12
Alignment explanation
Indices: 14960030--14960064 Score: 61
Period size: 12 Copynumber: 2.8 Consensus size: 12
14960020 ATTTTTCCAT
14960030 TTTTTCTTTTTTC
1 TTTTT-TTTTTTC
14960043 TTTTTTTTTTTC
1 TTTTTTTTTTTC
14960055 TTTTTTTTTT
1 TTTTTTTTTT
14960065 CTCATTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
12 17 0.77
13 5 0.23
ACGTcount: A:0.00, C:0.09, G:0.00, T:0.91
Consensus pattern (12 bp):
TTTTTTTTTTTC
Found at i:14960073 original size:12 final size:11
Alignment explanation
Indices: 14960031--14960066 Score: 54
Period size: 11 Copynumber: 3.1 Consensus size: 11
14960021 TTTTTCCATT
14960031 TTTTCTTTTTTC
1 TTTT-TTTTTTC
14960043 TTTTTTTTTTTC
1 -TTTTTTTTTTC
14960055 TTTTTTTTTTC
1 TTTTTTTTTTC
14960066 T
1 T
14960067 CATTTTTCAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 12 0.52
12 7 0.30
13 4 0.17
ACGTcount: A:0.00, C:0.11, G:0.00, T:0.89
Consensus pattern (11 bp):
TTTTTTTTTTC
Found at i:14964156 original size:60 final size:59
Alignment explanation
Indices: 14963968--14964259 Score: 425
Period size: 59 Copynumber: 5.0 Consensus size: 59
14963958 GTTCTTGTGT
*
14963968 AGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTGAAATTGTGATTTTCA
1 AGGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTGAAATTTTGATTTTCA
* * *
14964027 AGGAAAATTGATATTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTT-ATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATA-TTTTTTTGAAATTTTGATTTTCA
14964086 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTAGAAATTTTGATTTTCA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAATTTTGATTTTCA
*** *
14964146 AGGAAAATTGATACTTTCAACTTTT-CCTCAAAAA-CCCTTTTTGAAA-TTT-ATTTTTA
1 AGGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTGAAATTTTGATTTTCA
14964202 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTT
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAATTTTGATTTT
14964260 TATTTAAAGA
Statistics
Matches: 209, Mismatches: 14, Indels: 19
0.86 0.06 0.08
Matches are distributed among these distances:
56 36 0.17
57 11 0.05
58 15 0.07
59 90 0.43
60 57 0.27
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.46
Consensus pattern (59 bp):
AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTTGATTTTCA
Found at i:14964230 original size:116 final size:118
Alignment explanation
Indices: 14963968--14964259 Score: 475
Period size: 116 Copynumber: 2.5 Consensus size: 118
14963958 GTTCTTGTGT
*
14963968 AGGAAAATTGATACTTTCAACTTTT-CCTCAAAAATATTTTTTTGAAATTGTGATTTTCAAGGAA
1 AGGAAAATTGATACTTTCAACTTTTCCCT-AAAAATATTTTTTTGAAATTTTGATTTTCAAGGAA
* ***
14964032 AATTGATATTTTCAACTTTTCCCTAAAAATATTTTTTTTGAAAATTTATTTTTA
65 AATTGATACTTTCAACTTTTCCCTAAAAATACCCTTTTTGAAAATTTATTTTTA
14964086 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTAGAAATTTTGATTTTCAAGGAA
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAATTTTGATTTTCAAGGAA
*
14964151 AATTGATACTTTCAACTTTT-CCTCAAAA-ACCCTTTTTG-AAATTTATTTTTA
65 AATTGATACTTTCAACTTTTCCCTAAAAATACCCTTTTTGAAAATTTATTTTTA
14964202 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGGAAATTTTGATTTT
1 AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTT-GAAATTTTGATTTT
14964260 TATTTAAAGA
Statistics
Matches: 165, Mismatches: 7, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
116 70 0.42
117 7 0.04
118 46 0.28
119 42 0.25
ACGTcount: A:0.34, C:0.12, G:0.09, T:0.46
Consensus pattern (118 bp):
AGGAAAATTGATACTTTCAACTTTTCCCTAAAAATATTTTTTTGAAATTTTGATTTTCAAGGAAA
ATTGATACTTTCAACTTTTCCCTAAAAATACCCTTTTTGAAAATTTATTTTTA
Found at i:14964293 original size:22 final size:22
Alignment explanation
Indices: 14964268--14964309 Score: 68
Period size: 22 Copynumber: 1.9 Consensus size: 22
14964258 TTTATTTAAA
14964268 GAAAATAGAATAAA-ATAAAAGT
1 GAAAATA-AATAAAGATAAAAGT
14964290 GAAAATAAATAAAGATAAAA
1 GAAAATAAATAAAGATAAAA
14964310 AATAAAGAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.71, C:0.00, G:0.12, T:0.17
Consensus pattern (22 bp):
GAAAATAAATAAAGATAAAAGT
Found at i:14964301 original size:4 final size:4
Alignment explanation
Indices: 14964292--14964404 Score: 60
Period size: 4 Copynumber: 27.8 Consensus size: 4
14964282 ATAAAAGTGA
*
14964292 AAAT AAAT AAAGAT AAA- AAAT AAAGA AAAGT AAA- ACAA- AAAT AAA-
1 AAAT AAAT -AA-AT AAAT AAAT AAA-T AAA-T AAAT A-AAT AAAT AAAT
* *
14964337 AAAT AGAT AAA- AAA- AATATT AAAT AAATCT AAAT CAAT -AAT AAAT
1 AAAT AAAT AAAT AAAT AA-A-T AAAT AAA--T AAAT AAAT AAAT AAAT
*
14964382 AAAT AAAT AAAC AAAT AAAT AAA
1 AAAT AAAT AAAT AAAT AAAT AAA
14964405 ATTCTGAAAA
Statistics
Matches: 89, Mismatches: 7, Indels: 26
0.73 0.06 0.21
Matches are distributed among these distances:
3 17 0.19
4 52 0.58
5 12 0.13
6 8 0.09
ACGTcount: A:0.73, C:0.04, G:0.04, T:0.19
Consensus pattern (4 bp):
AAAT
Found at i:14964311 original size:17 final size:17
Alignment explanation
Indices: 14964280--14964337 Score: 59
Period size: 17 Copynumber: 3.5 Consensus size: 17
14964270 AAATAGAATA
*
14964280 AAATAAAAGT-GAAAAT
1 AAATAAAAGTAAAAAAT
14964296 AAAT-AAAGATAAAAAAT
1 AAATAAAAG-TAAAAAAT
*
14964313 AAAGAAAAGTAAAACAA-
1 AAATAAAAGTAAAA-AAT
14964330 AAATAAAA
1 AAATAAAA
14964338 AATAGATAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 7
0.78 0.07 0.16
Matches are distributed among these distances:
15 4 0.11
16 5 0.14
17 20 0.57
18 6 0.17
ACGTcount: A:0.76, C:0.02, G:0.09, T:0.14
Consensus pattern (17 bp):
AAATAAAAGTAAAAAAT
Found at i:14964326 original size:39 final size:39
Alignment explanation
Indices: 14964269--14964350 Score: 96
Period size: 39 Copynumber: 2.1 Consensus size: 39
14964259 TTATTTAAAG
* ** *
14964269 AAAATAGAATAAAATAAAAGTGAAAATAAATAA-AGATAA
1 AAAATAGAAGAAAATAAAA-CAAAAATAAAAAATAGATAA
14964308 AAAATA-AAGAAAAGTAAAACAAAAATAAAAAATAGATAA
1 AAAATAGAAGAAAA-TAAAACAAAAATAAAAAATAGATAA
14964347 AAAA
1 AAAA
14964351 AATATTAAAT
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
38 16 0.43
39 21 0.57
ACGTcount: A:0.76, C:0.01, G:0.09, T:0.15
Consensus pattern (39 bp):
AAAATAGAAGAAAATAAAACAAAAATAAAAAATAGATAA
Found at i:14964333 original size:21 final size:21
Alignment explanation
Indices: 14964306--14964352 Score: 62
Period size: 21 Copynumber: 2.2 Consensus size: 21
14964296 AAATAAAGAT
14964306 AAAAAATAAAGAAA-AG-TAAA
1 AAAAAATAAA-AAATAGATAAA
14964326 ACAAAAATAAAAAATAGATAAA
1 A-AAAAATAAAAAATAGATAAA
14964348 AAAAA
1 AAAAA
14964353 TATTAAATAA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
20 4 0.17
21 15 0.62
22 5 0.21
ACGTcount: A:0.81, C:0.02, G:0.06, T:0.11
Consensus pattern (21 bp):
AAAAAATAAAAAATAGATAAA
Found at i:14964364 original size:11 final size:11
Alignment explanation
Indices: 14964330--14964404 Score: 57
Period size: 11 Copynumber: 6.9 Consensus size: 11
14964320 AGTAAAACAA
*
14964330 AAATAAAAAAT
1 AAATAATAAAT
*
14964341 AGATAA-AAA-
1 AAATAATAAAT
*
14964350 AAATATTAAAT
1 AAATAATAAAT
*
14964361 AAAT-CTAAAT
1 AAATAATAAAT
*
14964371 CAATAATAAAT
1 AAATAATAAAT
*
14964382 AAATAAATAAAC
1 AAAT-AATAAAT
14964394 AAATAAATAAA
1 AAAT-AATAAA
14964405 ATTCTGAAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
9 4 0.08
10 14 0.27
11 17 0.33
12 17 0.33
ACGTcount: A:0.72, C:0.04, G:0.01, T:0.23
Consensus pattern (11 bp):
AAATAATAAAT
Found at i:14965289 original size:24 final size:25
Alignment explanation
Indices: 14965238--14965298 Score: 72
Period size: 25 Copynumber: 2.4 Consensus size: 25
14965228 ATAATCGGAT
14965238 AAATAAAAAAACAGATAAATGAATA
1 AAATAAAAAAACAGATAAATGAATA
* *
14965263 AAATAAAATTAACAGAT-AATTAA-A
1 AAATAAAA-AAACAGATAAATGAATA
14965287 AAATAAATAAAA
1 AAATAAA-AAAA
14965299 TAAATCCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
24 10 0.32
25 14 0.45
26 7 0.23
ACGTcount: A:0.72, C:0.03, G:0.05, T:0.20
Consensus pattern (25 bp):
AAATAAAAAAACAGATAAATGAATA
Found at i:14965398 original size:24 final size:20
Alignment explanation
Indices: 14965377--14965417 Score: 55
Period size: 20 Copynumber: 1.9 Consensus size: 20
14965367 ATATATATTA
14965377 ACATAAAAAATAAATAAAATAT
1 ACAT-AAAAAT-AATAAAATAT
*
14965399 ACATAATAATAATAAAATA
1 ACATAAAAATAATAAAATA
14965418 ATATAAATAC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 9 0.50
21 5 0.28
22 4 0.22
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (20 bp):
ACATAAAAATAATAAAATAT
Found at i:14965441 original size:8 final size:9
Alignment explanation
Indices: 14965383--14965441 Score: 52
Period size: 9 Copynumber: 6.4 Consensus size: 9
14965373 ATTAACATAA
*
14965383 AAAATAAAT
1 AAAATACAT
14965392 AAAATATACAT
1 -AAA-ATACAT
14965403 AATAATA-AT
1 AA-AATACAT
14965412 AAAATA-AT
1 AAAATACAT
14965420 ATAAATACAT
1 A-AAATACAT
14965430 AAAATACA-
1 AAAATACAT
14965438 AAAA
1 AAAA
14965442 AGGAAAAAGA
Statistics
Matches: 44, Mismatches: 1, Indels: 10
0.80 0.02 0.18
Matches are distributed among these distances:
8 11 0.25
9 16 0.36
10 11 0.25
11 6 0.14
ACGTcount: A:0.71, C:0.05, G:0.00, T:0.24
Consensus pattern (9 bp):
AAAATACAT
Found at i:14966845 original size:26 final size:26
Alignment explanation
Indices: 14966809--14966861 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
14966799 GTTGACTTAG
14966809 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14966835 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14966861 G
1 G
14966862 ATCAGACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14968216 original size:717 final size:718
Alignment explanation
Indices: 14966835--14969635 Score: 3873
Period size: 688 Copynumber: 4.0 Consensus size: 718
14966825 CCCAGTCTAA
* *
14966835 GCATACGGAGTTCATTCCCAGTCTAAGATCAGA-CTGGACCGAGGGTTGCGACAGCACATGCTAG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATC-GGACCGAGGGTTACGGCAGCACATGCTAG
* ** ** ** *
14966899 GCTCGGGCATGTGCTGGTTTCATATTTTTCTTCGTCGGGGCACCATCG-CAGGAGCATCGCCGGA
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCA-GAGCATCGTCGGA
* * * * **
14966963 GAACCTGACCG-GGGCATTGGGGTTCCTGCGATCGAGGGGACCGGGGGGTGTGCGCGTATGATGT
129 GAACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCGGGGGGGTGTGCGCACATGATGT
* * *
14967027 GCGATGGGTGCTTGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAGTCA
194 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
14967092 CACCCCTTTAAAAAGCATTTGAGCTTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
14967157 TGGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGATTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTT
* *
14967222 ATGCATGCCAACAAAAATACAAGGATCACA-TCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCA-AGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
* ** * * *
14967286 AAATTTTGAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTAAAAAATA-AAGAACAAGTCGT
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA-AACGAGTCGT
14967350 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
**
14967415 GCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
14967480 GCGCATCTCGTCCCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTT
14967545 GGCTTAC
712 GGCTTAC
* * * * * *
14967552 TCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGACTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTAGG
*
14967617 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGAACCATCGCCAGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGAGA
* * * * *
14967682 ACCTGACCGACGGCATTGGGGTTCAGGTGATC-AGGGGGC-GGGGGGTGTGCACGCATGATGTGT
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* ** * *
14967745 AATGGGTACTTCTACATGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
196 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
14967810 CCCCCTTAAAGAGCATTTAAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAATGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
14967875 GGGACACTTTTTTCGAATGGTCACAAAATCTTGTCCACTTCGTGTTTTTAGCTGATTTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGT
* * *
14967940 GCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAA
391 GCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * *
14968005 TTTTAAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCATCTT
456 TTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* *
14968070 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTCACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
14968135 TTGGAATGCAGAAATATGAAGATGTGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGTG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
14968200 CATCTCGTCTCTCTGGCCGGCGTAGT--------GCCCGCCCGACCGCTCGTTTCGTCAGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGC
14968257 TTAC
715 TTAC
* ** * * *
14968261 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAATCGGACCAAGGGTTATAGTAGAACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ATCGGACCGAGGGTTACGGCAGCACATGCTAG
* * * *
14968325 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGAG
* * * *
14968390 AACCTGACCGACGGCTTTGGGGTTTCGACGATCG-GGAGGGCCGGGGGGGTGTGCTCACATGATG
130 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGG-GGG-CGGGGGGGTGTGCGCACATGATG
*
14968454 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTC
193 TGCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
14968519 ACACCACCTTAAAGAGCATTTCAGATTTTACAGGTTTGCT-CGCAGTAGCCATTAAAGTGTCTGA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC-CAGTAGCCATTAAAGTGTCTGA
* * * *
14968583 AATGGGGACACATTTTCCAAATTGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGATTTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTT
* * * * *
14968648 TTTTGCATGCCAACAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTACCGAA
387 TTGTGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* ** * * *
14968713 AAAATTTTAAAATATCTTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACTAGTTGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
14968778 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
14968843 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
14968908 GTGCATCCCGTCTCTCTGGCCGACGTAGTGCCCACCGGCCCGCCCGCCCGCTTGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTT
*
14968973 GGCTTAG
712 GGCTTAC
*
14968980 GCATACGGAGTTCATTCCCAATCTAAGATCAGAT-----CGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTAGG
* *
14969040 CTC-GGGATGTGCTGGTGCCGTATTTTTCTTCACCGGGG---CA---CC--A--A---T----G-
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGAGA
* * * *
14969086 -CC--A--GACGGCATTGGGGTTCCTGCAATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCGGGGGGGTGTGCGCACATGATGTGC
* *
14969146 GATGGGTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
14969211 -CCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
14969275 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCA-TTTTTAGCTGAATTTTTTTG
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGATTTTTTTTG
* * * *
14969339 TGCATGCCAAAAAAAATACGAGGATGATGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAA
390 TGCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * *
14969404 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCGAGAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
14969469 GCCATGAAACTTCATGTAAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
14969534 TTCGCACCCTGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * **
14969599 CATCCCGACTTTCTGGCCGGTGTAGTGCCCGCCCGCC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCC
14969636 AGTTGGCTTA
Statistics
Matches: 1874, Mismatches: 186, Indels: 77
0.88 0.09 0.04
Matches are distributed among these distances:
688 383 0.20
689 88 0.05
690 23 0.01
691 2 0.00
692 1 0.00
694 2 0.00
696 1 0.00
700 1 0.00
703 1 0.00
705 1 0.00
707 1 0.00
708 1 0.00
709 177 0.09
710 5 0.00
711 200 0.11
712 261 0.14
713 32 0.02
714 23 0.01
715 1 0.00
716 263 0.14
717 321 0.17
718 23 0.01
719 62 0.03
720 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (718 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTACGGCAGCACATGCTAGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGGCGATCGAGGGGGCGGGGGGGTGTGCGCACATGATGTGC
AATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCT
TAC
Found at i:14968736 original size:26 final size:26
Alignment explanation
Indices: 14968707--14968759 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
14968697 CAAAACTCCT
* *
14968707 ACCG-AAAAAATTTTAAAATATCTTGA
1 ACCGTAAAAAATTTCAAAA-ATCATGA
*
14968733 ACCGTAAAAAGTTTCAAAAATCATGA
1 ACCGTAAAAAATTTCAAAAATCATGA
14968759 A
1 A
14968760 AAATAGAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 11 0.48
27 12 0.52
ACGTcount: A:0.51, C:0.13, G:0.09, T:0.26
Consensus pattern (26 bp):
ACCGTAAAAAATTTCAAAAATCATGA
Found at i:14970721 original size:26 final size:26
Alignment explanation
Indices: 14970684--14970736 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14970674 GTTGACTTAG
*
14970684 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
14970710 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCTAGTCTAA
14970736 G
1 G
14970737 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCTAGTCTAA
Found at i:14971618 original size:26 final size:26
Alignment explanation
Indices: 14971582--14971660 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
14971572 GTTGACTTAG
14971582 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
*
14971608 GCATACGGAGTACATTTCCAGTCTAA
1 GCATACGGAGTTCATTTCCAGTCTAA
14971634 GCATACGGAGTTCA-TTCGCAGTCTAA
1 GCATACGGAGTTCATTTC-CAGTCTAA
14971660 G
1 G
14971661 ATTGGACCAG
Statistics
Matches: 50, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
25 3 0.06
26 47 0.94
ACGTcount: A:0.28, C:0.23, G:0.22, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTTCCAGTCTAA
Found at i:14972822 original size:903 final size:903
Alignment explanation
Indices: 14969091--14976092 Score: 8426
Period size: 898 Copynumber: 7.8 Consensus size: 903
14969081 CAATGCCAGA
* * * *
14969091 CGGCATTGGGGTTCCTGCAATCGGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1 CGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
14969156 GGTACTTGGCCATTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
14969220 GAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
14969285 TTTCAAATGGTCACAAAATCTTGTACACTTCGCA-TTTTTAGCTGAATTTTTTTGTGCATGCCAA
196 TTTCAAATGGTCACAAAATCTTGTACACTTCG-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * * * *
14969349 AAAAAATACGAGGATGATGTCTACCAAGTTTTGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
260 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * *
14969414 ATCTCGAACCGTAAAAAGTTTCGAGAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
325 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * **
14969479 TTCATGTAAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGCACCCT
390 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-TGT
* * *
14969544 -GAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCTCGGCTTGCGCATCCCGAC
454 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * * *
14969608 TTTCTGGCCG-----GT----GTA-G--TGCCCG--C-C-CG---C--CAGTTGGCTTAGGCATA
519 TCTCTGGCCGACATAGTGCCCGCACGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * ** ** ** * * **
14969652 CGAAGTTCATTCCCAGCCTAAGATGGGACCAGATTGAAAGTTGCAGCAGCAGGATTGGCAGCACG
584 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACG
** * * * * ** *
14969717 CAGAGGGGGACTTGGCCCATCCCTGGCTTGCGCATCCCGCCCCTCTACCCGACTGAGCGCCCGCA
649 CAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
14969782 TGCTCGTTTCGTGGGTTG----A--CAT----AG----------G--T----ATACGGAGTTCAT
714 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* ** * * *
14969821 TCCCAGTCTAAGATCGGACTGGACCGAGGGTCGCGACAGCACATGCTTGGCTCGGGCATGTGTTG
779 TCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
14969886 GTGCCGCATTTTTCTTCGTCGGGGCACCATCATCAGAGCATCATCGGAGAACCTAATCGG
844 GTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGG
* * * *
14969946 CGGCATTGGGGTTTCGGCGATCAGGGGGGACGCGGGGGTGTGCGCACATAATGTGCGATGGGTGC
1 CGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
*
14970011 TAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* ** * * * * *
14970076 TGAAAATTTTAGATTTTTCAGGTTTGCTGCCAATAGCCGTTAAAGTATCTGAAATGGGGACACTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
14970141 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATATTTTTGTGCATGCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* *
14970206 AAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
260 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* ** **
14970271 ATCCCGAACCGCAAAATGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTCACCATGAAAC
325 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * *
14970336 TTCAGGTGAAGGCGTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCATGTA
390 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
* * *
14970401 GAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCCCGTCA
455 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * *
14970466 CTCTGGCCGACATAGTGCCCGCACGCCCGCCCACCCGCTCGTTTCATCGGTTGGCTTAAGCATAC
520 CTCTGGCCGACATAGTGCCCGCACGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * ** * ** *
14970531 GGAGTTCGTTCCTAGTCTAAGATCAGACTGGATCGAGGGTTGCGATAGCAAGATCGATAGCACGC
585 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGC
* * * * * * *
14970596 AAAGGGGGACCCGACCGATCCCCGACTTGCT-CTTCACGCCCCTTTGGCCGGCTGAGTGCCCACA
650 AGAGGGGGACCCGACCGATCCCCGGCTTG-TGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* *
14970660 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAAGTTCAT
714 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
14970725 TCCTAGTCTAAGATCGAACCAGACTGAGGGTTACAGCAGCACATGCTGGGGTCGGGCATGTGCTG
779 TCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * *
14970790 GTGTCACATTTTTCTTCGTCAGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGACCGG
844 GTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGG
* * * *
14970850 CGGCATTAGGGTTCCGACGATCGGGGGGGTCGGGGGGGTGTGCGCACATGATGTGAGATGGGTGC
1 CGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
14970915 TGGTACTTGGCCCTTATATTGGCCCCCTATCCTTCATCAAACCTCAAGAACTCACACCCCCTTGA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
*
14970980 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* *
14971045 TTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTG-ATTTTTGTTGTTCATGCCA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT-TTGTGCATGCC-
* *
14971109 AAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCAAAAACTCCTTCCGAAAAAATTTTAAA
258 AAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AA
** * *
14971174 AAAATCTTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATTA
322 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * ** * *
14971239 AACTACATGTGAAGGCTTAAGGGAATATTGTATGAATTTACAAGGCATAAAAATGGCATTGACAT
387 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * *
14971304 GCAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCAATCGATCCACGGCTTGTGCATCCCG
452 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * *
14971369 TCTCTCTGGCCGACGTAGT--AC-C-CGCCCGCCCG-T---TAGCTTGGTCGGTTGGCTTAGGCA
517 TCTCTCTGGCCGACATAGTGCCCGCACGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCA
** * * *
14971426 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTAGTAGTAGGATCGGTAGCA
582 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCA
* * *** *
14971491 CACAGAGGGGGACCCGACCGATCCTCGGCTTGCAAATCCCGCCCTTCTGGCCGGCTGAGCGCCCG
647 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* *
14971556 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTAC
712 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * *
14971621 ATTTCCAGTCTAAGCATACGGAGTTCATTCGCAGTCTAAGATTGGACCAGACTGAGGGTTGCAGC
777 ATTCCCAGTCTAAG-AT-C---G-------G-A--CT---A---GA-C---C-GAGGGTTACGGC
* * *
14971686 AGCACATGCTGGGCTCCGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGAGGCACCATCA-CTGG
816 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATC-GG
*
14971750 AGCATCGTCGGAGAACCTGATCGG
880 AGCATCGTCGGAGAACCTGACCGG
* * * * * *
14971774 -GGCCATTGCGGTTCCGGTGATCGGGGGGGCC-GGGGGGTGTGTGCATAGGATGTGCAATGGGTG
1 CGG-CATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
14971837 CTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAAGCTCAAGAACTCACACCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
14971902 AAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACT
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
14971967 TTTTTCAAATGGTCACAAAATGTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGTGCATGCCA
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* *
14972032 ACAAAAATACAAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
259 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
*** * * *
14972097 AATTTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTTCCTTGAAA
324 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* *
14972162 CTTAACGTGAAGGCTTAAGGGACAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
389 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
*
14972227 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCTCGTC
454 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * *
14972292 TCTCTGGCCGGCATAGTGCCCGCACGCCCGCCCGCTCGCTTGTTTCATCGGTTGGCTTAGGCATA
519 TCTCTGGCCGACATAGTGCCCGCACGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * *
14972357 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCATGATCGACAGCACG
584 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACG
* ** * *
14972422 CAGAGGGTGACCCGGTCGTTCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCA
649 CAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
* * *
14972487 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCTT
714 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * *
14972552 TCCCAGTCAAAGATCGGACTAGACCGAGGGTTACGGCAGGACATACTGGGCTCGGGCATGTGCTG
779 TCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTG
* * * * * *
14972617 GTGCCGTATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCATCAGAGAACC-GATCGG
844 GTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGG
14972676 CGGCATTGGGGTTCCGGCGATCGGAGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
1 CGGCATTGGGGTTCCGGCGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* * *
14972741 TGGTACTTGGCCCTTATAATGGCCCCCTATCCCTGATCAAACCTCGAGAACTGACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* *
14972806 AGAGCATTTTAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
* * *
14972871 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTATGCATCCCAA
195 TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
* * *
14972936 CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAATTTTAAAAA
260 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * * * * *
14973001 ATCCTGAACAGGAAAAAATTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
325 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
*
14973066 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
390 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
14973131 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
455 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
*** * * * **
14973196 CTCTGGCCGGTGTAGTGCCGGCCCCCTCACCCGCTCGCCCGCCCGCTCGTTTCGTTTGTTGGCTT
520 CTCTGGCCGACATAGT----G--CCCGCA--CGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTT
* * * * * * * * * *
14973261 CGGTATACGGAGTTCATTCCTAGTCTAAGATGAGACCAGACCAAGGGTTACAGTAGTAGGATCGG
577 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGA
* * * ** * * * * *
14973326 TAGCCCGCAAAGGGGGGCTTGATCGATCCTCGGCTTATGCATCCCACCCCTCTGGCCGGCTGAGT
642 TAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGC
* *
14973391 GCCCGCATGCTCGTTTCGTGGGTTGACTTAGG----C--A---CA-T---GGTCTAAGCATACGG
707 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * *
14973443 AGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGACAGCACAGGTTGGGCTCGGGCA
772 AGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCA
* * * * *
14973508 TGTGCTGGTGCCGCATTTTTCTTCGCCAGGGAACCATCACCGAAGCATCGTCGGAGAACCTGACC
837 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACC
14973573 GG
902 GG
* *
14973575 CGGCATTGGGGTTCCGGCGATCGGGGGGTCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
1 CGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
14973640 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTACA-CCCCTTAAA
66 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
*
14973704 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTT
131 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* *
14973769 TTTCAAATGGACACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAA
196 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AA
14973834 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
260 AAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
* * *
14973899 ATCCCAAACCGCAAAAAGTTTCCAAAATCATGAAAGATAGAAAACGAGTCGTCTTGCCATGAAAC
325 ATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
* * * * **
14973964 TTCACGTGAAGCCTTAAGGGACCATTGTAAGAATTTACAACCCATAAAGATGGCATTGGCACATA
390 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
* * * * *
14974029 GAAATATGAAGATGTGCCTCAAAACCACCTACCACCCTATCAATCAACGGCTTGTGCATCCTGTC
455 GAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* * ** * * *
14974094 TCTCTGGTCGAAATAGTGCTTGCCCGCCCGCCCG-TCCGCTCGTTTCATCGGTTGGCTTAGCCAT
519 TCTCTGGCCGACATAGTGCCCGCACGCCCGCCCGCT-CGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * ** **
14974158 ACGGAGTTCATTCCCAGTCTAAGATCAGATCAAACCGAGGATTATGGCAATAGGATCTG-TAGCA
583 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC-GATAGCA
* * ** * * *
14974222 CGTAAAGGGGGACCCGGTCGATCCCCGGCTAGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCG
647 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * * * * *
14974287 CACGCTCGTTTCATGGCTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAATCATGCGGAGTTC
712 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTC
** * * *
14974352 ATTCCCA-TCCTAAGATTAGACTGGACTGAGGGTTACGGCAGCACATGCTGTGCTCGGGCATGTG
777 ATTCCCAGT-CTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTG
** *
14974416 CTGGT-CCAATATTTTTCTTTGTCGGGG------CA-C----CATCGTC-G-G-A-C--A----
841 CTGGTGCC-GCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGG
* *
14974458 --GCATTGGGGTTCCGACGATCGGGGGGGGCC-GGGGGGTGTGCACACATGATGTGCGATGGGTG
1 CGGCATTGGGGTTCCGGCGATC--GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
14974520 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
64 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * * *
14974585 AAAAGCATTTGAGATTTTACAAGTTTGCTGCTAGTAGCCATTAAAGTGTTTGAAATGGGGACACT
129 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * * * *
14974650 TTTTTCAAATAGTCACAAAATCTTTTACACTTTGAGTCTTTAGCTGAGTTTTTTTTTGCATGCCA
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * *
14974715 ATAAGAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAA
259 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* * *
14974780 AATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAA
324 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* ***
14974845 CTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT-GCACAC
389 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
* * * * * *
14974909 AAAAATATGAAGATGTGCAC-AAACCCACCTACTACCTTATCGATCCATGACTTGCGCATCCGGT
454 AGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * ** * *
14974973 CGCTCTAGCAGGCACATTGCCCACCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
518 CTCTCTGGC-CG-ACATAG--TGCCCGCACGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAG
* * * ** * * *
14975038 GCACATGGAGTTCTTTCCCAGTCTAAGATTGGACCAGATCGAGGGTTGCGGCAGCAAGATCGACA
579 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATA
* * * * *
14975103 GCACGCAGAGGGGGACCC-AGCCGATCCTCGGCTTATGCATCCCACCCCTCTCGTCGGCTGAGCG
644 GCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * * *
14975167 CCCGCACGCTTGTTTCGTGGGTTAACTTAGGCACACGGAGTTCATTCCCAGTCTAAGCATATGAA
708 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* ** ** **
14975232 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT---GC-G-GTAT--TTTG-T--TTCA-
773 GTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCAT
* * *
14975286 -T-C-GG-G--GCA----CCATCATC--GG----ATCATCGGAGCATCGTCGGAGAACCTGACCG
838 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCG
*
14975335 A
903 G
* * * * *
14975336 TGGTATTGGTGTTCCGGCGATCAGGGGGGCCGGGGGGGTGTGCCCACATGATGTGTGATGGGTGC
1 CGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
* *
14975401 TGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
65 TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
* * * * * * *
14975466 AGTGCATTTGAGATTTTACATGTTCGCTGTC-GCTAGCTATTAAAATGTCTAAAATGGGGACACT
130 AGAGCATTTGAGATTTTACAGGTTTGCTGCCAG-TAGCCATTAAAGTGTCTGAAATGGGGACACT
* * *
14975530 TTTTTCAAATGGTCACAAAATCTTGTAGACTTCGAGTATTTAGCTGAATTGTTTTGTGCATGCCA
194 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * ** * *
14975595 AAAAAAATACAAGGATTAGGTCTACCAAGTTTGGAGCTGAAACCCCTTCCAAAAAAATTTTAAAA
259 AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* ** *
14975660 AATCCCGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAA
324 AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
*
14975725 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGTCATGT
389 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
* * * *
14975790 AGAAATGTGAAGATCTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTC
454 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
14975855 TCTCTGGCCGACGTAGTG-CC-CA--CCCG--C-CT-GCTCGTTTCGTCGGTTGGCTTAGGTATA
519 TCTCTGGCCGACATAGTGCCCGCACGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATA
* * * * * *
14975912 CGGAGTTCATTCCCAATCTAAGATCGGACCAGACCAAGGGTTGCAGCAGCAGGATCGGTAGCACA
584 CGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACG
* * * * * *
14975977 TAGAGGGGGACCTGACCAATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCC
649 CAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCA
*
14976042 CGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
714 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
14976093 ATTGGACCAG
Statistics
Matches: 5302, Mismatches: 683, Indels: 310
0.84 0.11 0.05
Matches are distributed among these distances:
855 19 0.00
856 94 0.02
857 366 0.07
861 2 0.00
862 2 0.00
863 6 0.00
864 1 0.00
866 2 0.00
867 2 0.00
868 7 0.00
869 186 0.04
870 5 0.00
871 4 0.00
872 3 0.00
873 6 0.00
874 3 0.00
875 1 0.00
876 4 0.00
877 3 0.00
878 127 0.02
879 15 0.00
880 433 0.08
881 106 0.02
882 267 0.05
883 133 0.03
884 223 0.04
885 1 0.00
887 1 0.00
888 2 0.00
889 1 0.00
890 1 0.00
891 160 0.03
892 2 0.00
893 9 0.00
895 2 0.00
897 131 0.02
898 612 0.12
899 84 0.02
900 4 0.00
901 4 0.00
902 40 0.01
903 557 0.11
904 437 0.08
905 60 0.01
906 191 0.04
907 3 0.00
908 2 0.00
909 5 0.00
911 166 0.03
913 1 0.00
914 2 0.00
916 2 0.00
917 1 0.00
919 2 0.00
920 1 0.00
921 196 0.04
922 58 0.01
923 207 0.04
924 118 0.02
925 10 0.00
926 1 0.00
927 1 0.00
928 2 0.00
929 205 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
CGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAA
AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
TCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAG
AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
TCTGGCCGACATAGTGCCCGCACGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGATAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTC
CCAGTCTAAGATCGGACTAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGT
GCCGCATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGTCGGAGAACCTGACCGG
Found at i:14973045 original size:26 final size:27
Alignment explanation
Indices: 14972986--14973037 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
14972976 ATTCCTTCCA
* * *
14972986 AAAAAATTTTAAAAAATCCTGAACAGG
1 AAAAAATTTTAAAAAATCATGAAAAAG
14973013 AAAAAATTTT-AAAAATCATGAAAAA
1 AAAAAATTTTAAAAAATCATGAAAAA
14973038 TAGAAAATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 12 0.55
27 10 0.45
ACGTcount: A:0.62, C:0.08, G:0.08, T:0.23
Consensus pattern (27 bp):
AAAAAATTTTAAAAAATCATGAAAAAG
Found at i:14976166 original size:159 final size:159
Alignment explanation
Indices: 14975877--14976251 Score: 545
Period size: 159 Copynumber: 2.4 Consensus size: 159
14975867 GTAGTGCCCA
* * * * *
14975877 CCCGCCTGCTCGTTTCGTCGGTTGGCTTAGGTATACGGAGTTCATTCCCAATCTAAGATCGGACC
1 CCCGCCCGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * *
14975942 AGACCAAGGGTTGCAGCAGCAGGATCGGTAGCACATAGAGGGGGACCTGACCAATCCCCGGCTTG
66 AGACCAAGGGTTGCAGCAGCAGGATCGGTAGCACACAAAGGGGGACCCGACCAATCCCCGGCTTG
*
14976007 CGCATCCCACCCCTCTGGCCGGCTGAGCG
131 CGCATCCCACCCCTCTGGCCGGCTAAGCG
*
14976036 CCCGCCCGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACC
1 CCCGCCCGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* ** *
14976101 AGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACACAAAGGGGGACCCGACCGATCCCCGGCTTG
66 AGACCAAGGGTTGCAGCAGCAGGATCGGTAGCACACAAAGGGGGACCCGACCAATCCCCGGCTTG
** * *
14976166 CGCATCCTGCCCTTCTGGCCTGCTAAGCG
131 CGCATCCCACCCCTCTGGCCGGCTAAGCG
* * *
14976195 CTCACACGCTCGTTTCG-TGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
1 CCCGCCCGCTCGTTTCGTTGG-TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
14976252 CATACGGAGT
Statistics
Matches: 194, Mismatches: 21, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
158 3 0.02
159 191 0.98
ACGTcount: A:0.19, C:0.31, G:0.28, T:0.22
Consensus pattern (159 bp):
CCCGCCCGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
AGACCAAGGGTTGCAGCAGCAGGATCGGTAGCACACAAAGGGGGACCCGACCAATCCCCGGCTTG
CGCATCCCACCCCTCTGGCCGGCTAAGCG
Found at i:14976261 original size:26 final size:26
Alignment explanation
Indices: 14976225--14976277 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14976215 CTTGACTTAG
14976225 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
14976251 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
14976277 G
1 G
14976278 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:14977957 original size:26 final size:26
Alignment explanation
Indices: 14977927--14977979 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
14977917 GTTGACTTAC
14977927 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
** *
14977953 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
14977979 G
1 G
14977980 ATCGGATTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:14979278 original size:890 final size:892
Alignment explanation
Indices: 14977335--14979585 Score: 3097
Period size: 900 Copynumber: 2.5 Consensus size: 892
14977325 GTGCGCACAT
** *
14977335 GATTTTACAGGTTTGCTATCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* **
14977400 TCACAAAATCTTGTACACTTTGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAGCAAAAATACAA
66 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * *
14977465 GGATCATGTCTACCAAGTTTGGGGCCAAAATTCTTTCCAAAAAAATTTTAAAAAATCCCAAACTG
131 GGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTCGAAAAAAA-TTTAAAAAATCCCAAACCG
* *
14977530 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCTCTTGCCATGAAACTTCACGTGAAGG
195 AAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCTCTTGCCATGAAACTTCACGTGAAGG
* * **
14977595 CTTAAGGGACCATTGTATGAATTTGCAAGCCATAAAAATCACATTGGCACACAGAAATATGAAGA
260 CTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
* * * * **
14977660 TGTCCCTCAACCCACCTACCACCCTATCAATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGTA
325 TGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGCG
* * *
14977725 TAGTGCCCGCCCTCTCGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
389 TAGTGCCCG------CGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCTTTCCAAGT
* ** * * * *
14977790 CTAAGATCGGACTAGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACATAGAGGGGGACCCGGTC
448 CTAAGATCAGACTAGACCGAGGGTTGCAGCAACAGGATCGGCAGCACACAGAGGGGGACCCGGCC
* ** * ** *
14977855 GATCCCTGGCTTGTGCATCCCGCCCCTTTGGTCGGTTGAGCGCCCGCACACTCGTTTCATGGGTT
513 AATCCCTGGCTTCCGCATCCCGCCCCTTTGGCCGACTGAGCACCCGCACACTCGTTTCATGGGTT
* * *
14977920 GACTTACGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGG
578 GACTTACGCATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGA
**** * * * *
14977985 ATTGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
643 ACCAAACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTC
* * * * * * *
14978050 ACCGGGGCACCATCGTCGGAGTATCATTAGAGAAGCTGACTGGTAGCATTGGGGTTCCGACGATC
708 ACCGGGGCACCATCGCCGGAGCATCATCAGAGAACCTAACCGGCAGCATTGGGGTTCCGACGATC
* *
14978115 GGGGGGGCTAGGGAGGATGTGCGCACATGATGTGCGATGGGTACCGGTTCTTGGCCCTTATATTA
773 GGGGGGGCTAGGGAGGATGTGCACACATGATGTGCGATGGGTACCGGTACTTGGCCCTTATATTA
*
14978180 GTCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
838 GGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
*
14978235 GATTTTACAGGTTTGCTGCCAGTATCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
14978300 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
66 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* * * **
14978365 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAAAGTTAAAAAAT-CTGAACCG
131 GGATCATGTCTACCAAGTTTGGGGCCAAAAATC-TTTCGAAAAAAATTTAAAAAATCCCAAACCG
*
14978429 AAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCGCGTGAAG
195 AAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC-TCTTGCCATGAAACTTCACGTGAAG
* *
14978494 GCTTAAGGGAACATTGTATGAATTTACAAGCCATAAGAATGGCATTGGCACACAAAAATATGAAG
259 GCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
* *
14978559 ATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCGTCTCGCTGGTCGGC
324 ATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGC
* *
14978624 GTAGTGCCCG-G-GCGCTCGTTTCATCGGTTGGCCTAGGCATACGGAGTTCTTTCCAAGTCTAAG
388 GTAGTGCCCGCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCTTTCCAAGTCTAAG
* * ** * *
14978687 ATTAGACTGGATTGAGGGTTGCAGCAACAGGATTGGCAGCTCACAGAGGGGGACCCGGCCAATCC
453 ATCAGACTAGACCGAGGGTTGCAGCAACAGGATCGGCAGCACACAGAGGGGGACCCGGCCAATCC
* * *
14978752 CTGGCTTCCGCATCCTGCCCCTTTGGCCGACTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTT
518 CTGGCTTCCGCATCCCGCCCCTTTGGCCGACTGAGCACCCGCACACTCGTTTCATGGGTTGACTT
* *
14978817 AGGCATA-AGGAGTTCATTCCCAATCTAAGCTTACGGAGTTCATT-CTCAGTCTAAGATCGAACC
583 ACGCATACA-GAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCT-AGTCTAAGATCGAACC
* * *
14978880 AAACCAAGGGTTATGGCAGCACATGCTGGGCTTGGGCATGTGCTGGTGCCACATTTTTTTTCACC
646 AAACCAAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACC
* * * **
14978945 GGGGCACCATCGCCGGAGCATCGTCGGAGAACCTAACCGGCGGCATTGAGGG-TCCGGTGATC-G
711 GGGGCACCATCGCCGGAGCATCATCAGAGAACCTAACCGGCAGCATTG-GGGTTCCGACGATCGG
* * * * * *
14979008 GGGGGC-CGGGGGGGTGTGCACACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATT-GG
775 GGGGGCTAGGGAGGATGTGCACACATGATGTGCGATGGGTACCGGTACTTGGCCCTTATATTAGG
*
14979071 CCCCTTATCCCTCATCAAACCT-AGAGAACTCGCACCCCCTTAAAGAGCATTTGA
840 CCCC-TATCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTTGA
*
14979125 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGG
1 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
*
14979190 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCAGGCCAAAAAAAATACAA
66 TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
* *
14979255 GGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCAAACC-
131 GGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTC-GAAAAAAATTTAAAAAATCCCAAACCG
** * * *
14979319 ATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGCAACATCACGTGAA
195 A-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC-TCTTGCCATGAAACTTCACGTGAA
* * ***
14979384 GGCTTAAGGGAATATTGTATGAATTTACAAGCCATAAAAATGGCATTTGCATGTAGAAATATGAA
258 GGCTTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
* * * *
14979449 GATGTGCCTAAACCCACCTACCATCCTATCGATCCATGGCTTGCGCATCCTGTCTCTCTGGCTGG
323 GATGTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC-GG
*
14979514 CACAGT-GCTCGCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
387 --C-GTAG-T-GCCCG--CGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTC-TTTCC
14979578 AA-TCTAAG
444 AAGTCTAAG
14979586 CATACAGAGT
Statistics
Matches: 1197, Mismatches: 133, Indels: 43
0.87 0.10 0.03
Matches are distributed among these distances:
889 9 0.01
890 268 0.22
891 186 0.16
892 307 0.26
893 6 0.01
894 3 0.00
895 5 0.00
898 1 0.00
899 84 0.07
900 317 0.26
901 11 0.01
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (892 bp):
GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
TCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
GGATCATGTCTACCAAGTTTGGGGCCAAAAATCTTTCGAAAAAAATTTAAAAAATCCCAAACCGA
AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCTCTTGCCATGAAACTTCACGTGAAGGC
TTAAGGGAACATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
GTACCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCGGCGTA
GTGCCCGCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCTTTCCAAGTCTAAGATC
AGACTAGACCGAGGGTTGCAGCAACAGGATCGGCAGCACACAGAGGGGGACCCGGCCAATCCCTG
GCTTCCGCATCCCGCCCCTTTGGCCGACTGAGCACCCGCACACTCGTTTCATGGGTTGACTTACG
CATACAGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCTAGTCTAAGATCGAACCAAACC
AAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGC
ACCATCGCCGGAGCATCATCAGAGAACCTAACCGGCAGCATTGGGGTTCCGACGATCGGGGGGGC
TAGGGAGGATGTGCACACATGATGTGCGATGGGTACCGGTACTTGGCCCTTATATTAGGCCCCTA
TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGA
Found at i:14979589 original size:26 final size:26
Alignment explanation
Indices: 14979559--14979611 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
14979549 GTTGGCTTAG
*
14979559 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
14979585 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
14979611 G
1 G
14979612 ATCAGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:14980486 original size:26 final size:26
Alignment explanation
Indices: 14980450--14980502 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
14980440 GTTGACATAG
*
14980450 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14980476 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
14980502 G
1 G
14980503 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:14985294 original size:902 final size:897
Alignment explanation
Indices: 14983108--14990533 Score: 8834
Period size: 902 Copynumber: 8.3 Consensus size: 897
14983098 TCGGTCTGAT
* ** * * *
14983108 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAAATCACGAAACGAGCGTGTGGACGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
14983173 CAGCCAG--GGGCGGGATTCGTAAGCCGGGGATCGATCGAGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14983236 TGTTACCCCAACCCTTTG-TCCGGT-TCGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCC
131 TGCTATCGCAACCC-TCGATCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
14983299 AACCGACGAAAGGTACGGACGGGCGGGCGAGCAGGCGGGCACTATGCCGACTAGAAAGACGGGAT
194 AACCGACG-AA---AC-GA---GCGGGC-AGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGAT
* * * *
14983364 GCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTGCATGCCA
250 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCA
* * * * *
14983429 ATACCATTTTTATGGCTTGTCAATTCATACAATGGTTCCTTAAGGCTTCATGTGAAGTTTCATGG
315 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
14983494 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAA
380 CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAA
* *
14983558 ATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
444 ATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG
* ** *
14983623 CAGAAAAAAATTCAATTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCC
509 CACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
14983688 CCATTT-AGACACTTTAATGGCTACTAGCAGCAAACC--TAAAATC-CAAATGCCCTTTAAGGGG
574 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * *
14983749 GTGTGAGTTCTCAATGTTTGATGAGGGATTGGGGGCCAAGTATCAGAGGGCCAGGGTACCAGCAC
639 GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA-TAT-A-AGGGCCA-AGTACCAGCAC
* * *
14983814 CCATCGCACATCATGGTGTGGCACCCCCCCCTCGGCTCCCTCGATCGTC-GAACCCC-ATG-CGC
700 CCATCGCACATCAT-GTG-CGCA-CACCCCC-CGGC-CCCCCGATCGTCGGAACCCCAATGCCG-
* * * * **
14983876 CACTTGTCAGGTTCTTCAGGCGATGCTCCGACGATGGATGCTCCGACGAAAGAAAAATGTTAGCA
759 C-C-GGTCAGGTTC-TCCGGTGATGCTCCGACGATGG-TGCCCCGACG-AAGAAAAATG-CGGCA
* * * * *
14983941 CCAGCACATGCTCGAGCCCAGCATGTGCTGCAGGCAACCCTCGGTCCGATC-GATATTAGACTGA
818 CCAGCACATGCCCGAGCCCAGCATGTGCTGC-CGCAACCCTCGGTCCGGTCTGATCTTAGACTGG
*
14984005 GAACGAACTCCCGTAT-
882 GAATGAACT-CCGTATG
* * * *
14984021 C-TAGACCGGGAATGAACTACCGTATAGTCC-AAGT-TACCCACCGAAATGAGCGTACGGGCGCT
1 CTTAGACTGGGAATGAACT-CCGTAT-G-CCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCT
* * * * **
14984083 CAACTCGGCTAGAAGGGCGAGAT-CGC-AGCCGGGGGATC--CGTGGGTCCCCCCTCTGCACGCT
62 CAGC-CGGCCAGAAGGGCGGGATGCGCAAGCC-GGGGATCGAC-CGGGT-CCCCCTCTGCGTGCT
* * * * * *
14984144 ACCCATCCTACTACCCGTAACCCTCGATCCGGTCCTGATCTTGGACTGGGAATG-ACTCCGTATG
123 GCCGATCCTGCTA-TCGCAACCCTCGATCCGGT-CTGATCTTAGACTGGGAATGAACTCCGTATG
* *
14984208 CCTTAAGCCATCCCGACGAAACGAGCGGGCGGACAGGCGAGCGGGCACT--GCATCGGCCAGAGA
186 CC-TAAGCCA-ACCGACGAAACGAGC--G-GG-CA-GCGGGCGGGCACTACGC-T-GGCCAGAGA
* * *
14984271 GACGGCATGCGTAAGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCT
242 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* * *
14984336 ACATGCCAATGCCATTTTTATGGCTTGAAAATTCATACAATGGTCCCCTAAGCCTTCCCGTGAAG
307 ACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
* **
14984401 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAACTTTTTGCGGTTCGAGATT
372 TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATT
*
14984466 TTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTT
437 TTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTT
* * *
14984531 TTTGGAAAGCAC-AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
500 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
* *
14984595 AAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTC
565 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
*
14984660 TTTAAGGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
630 TTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
* **
14984725 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCATCATAACCCCAATGCCG
694 CAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCG
* *
14984790 CCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCCGACGAAGAAAAATGTGGCACGAGC
759 CCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTG-CCCCGACGAAGAAAAATGCGGCACCAGC
** * * *
14984855 ACATGCCCGAGCCCAGCATGTGCTGTTGTAAACCCTTGGTCCGGTCCTGATCTTTGACTGGGAAT
823 ACATGCCCGAGCCCAGCATGTGCTGCCG-CAACCCTCGGTCCGGT-CTGATCTTAGACTGGGAAT
14984920 GAACTCCGTATG
886 GAACTCCGTATG
* * *
14984932 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * **
14984997 CGGCCAGAAGGGCGGGATACGTAAGCCGGGGATCGACCGGGT-CCCCTCTGTGTACTGTTGATCC
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * *
14985061 AGCTATCACAACCCTCGATCTGGTCTGATGTTAGACTGGGAAATGAACAT-CGTATCCCTAAGCC
131 TGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGGG-AATGAAC-TCCGTATGCCTAAGCC
* * ** * *
14985125 AACAGACGAAACGAGCGGGCACCGGGCGGGCACTACGCTGGAGAGAGAGACAGGATGTGCAAGCC
194 AACCGACGAAACGAGCGGGCAGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCC
* *
14985190 GTGGATCGATTGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* *
14985255 TTATGGCTTGTAAATTCATAAAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * *
14985320 TCGTTTTCTATTTTTCACAGA-TTTTAAAACTTTTTACGGTT-GGGATTTTTTAAAATTTTTTC-
389 TCGTTTTCTATTTTTCAC-GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCG
* ** * *
14985382 AAAGGAGTTTTCACCCCAAACATGGTAGAACGTGATCCTTGTATTTTT-TTGGCCTGCACAAAAA
453 GAAGGAGTTTTGGCCCCAAACTTGGTAG-ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * *
14985446 AATTCAACT-AAAACTCAAAGTGTATAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCA
517 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * * *
14985510 GACACTTTAATGGCTACTGGTAGCAAACCTGTAATATCTCAAATGCTCTTTAAAGGGGTATGAGA
582 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * *
14985575 TCTCGAGGTTTGATGAGGGAAAGGGAGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATC
647 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
** *
14985640 ATGTGCGCACACCTCCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-
712 ATGTGCGCACACC-CCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * *
14985704 -----G----G-CGATGGTGCCGCGGCGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGC
775 GTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * ** * * *
14985759 ATGTGCTGCCGTAACACTCGGTCTAGTCCGATCCTAG-CTTAGGAATGAACTCCGTATG
840 ATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGAC-TGGGAATGAACTCCGTATG
** * * *
14985817 CTTAGACTGGGAACAAACTCTGTGTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
14985882 CGACGAGAGGGGCAGGATGCGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTGCGTGCTACCGATC
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGA-CCGGGTCCCCCTCTGCGTGCTGCCGATC
* * *
14985946 CTGCT-GCTGCAACCCTC-AGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
130 CTGCTATC-GCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
14986009 CAACCGACGAAACGGGC-GG--GTGGGCGTGCACTATG-TCGACTAGAGAGACGGGATGCACAAG
193 CAACCGACGAAACGAGCGGGCAGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAG
* * * *
14986070 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTTCATGCCAATCCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
14986135 TTTTATGGCTTGTAAATTCATACAATGG-----T--G-----AC--G-A----C-T-------C-
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
14986172 A-T--TTTT-TATTTTTCACGATTTTTGAAACTTTTTACGGTT-TAGGATTTTTT-AAACTTTTT
387 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTT
* * * *
14986231 CTGGAAGGATTTTTGGCCCCAAACTTAGTATACATGATCCTTGTATTTTTGTTGGCATGCACAAA
451 C-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
14986296 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14986361 CAGACACTTTAATGGCCACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGA
580 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
14986426 GTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCGATTGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
14986491 TCATGTGCGCACACCCCCCGGCCCCCCCATTCGCCAGAACCCCAATGCAGCCGGTCAGGTTCTCC
710 TCATGTGCGCACACCCCCCGGCCCCCCGA-TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * *
14986556 GGTGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATACGGCACCAGCACATGCCTGAACCCAG
774 GGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
14986621 GATGTGTTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACT-CGTATG
839 CATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
14986679 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCATGAAACGAACGTGTGGGTGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-
* * * *
14986744 CAGG-CAGAAGGGCGAGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCCGATC
65 CCGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATC
* * * * *
14986808 CTACTATCGCAACCCTC-AGTCTGGTCCGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCG
130 CTGCTATCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
** * * *
14986872 AACCGACGAAATAAGCGGGCGGGCGGGCGGGCACTACG-TCGGCCAAAGAGACGGGCTGCGCAAG
194 AACCGACGAAACGAGCGGGC-AGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAG
** *
14986936 CC-TGGATCGATAGGGTGGTAGGTGGGTTTAGGGTCATCTTCATATTTCTGCATGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
14987000 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACAGTGAAGTTTCATGGCAAGAT
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCATGGCAAGAC
* *
14987065 GACTCGTTTT-TA-TTTTCATGATTTTTGAAACATTTTGCGGTTCGAGATTTTTTAAAATTTTTT
386 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * *
14987128 CGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTT-TTGGCATGCACAAAA
451 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* ** *
14987192 ACAATTTAGCTAAAAACTAAAAGTGTAACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATT
516 A-AATTCAGCTAAAAACTCGAAGTGT-ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
14987257 TCAGACACTTTAAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
579 TCAGACACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-
* *
14987322 TTA-TTCTCGAGGTTTGATGAGGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCG
642 TGAGTTCTCGAGGTTTGATGAGGG-ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
* * *
14987386 CACATCAAGGTGCGGCACA-CCCCCGGCCCCCTCGAACGTCGGAACCCCAATGCCGTCGGTCCAG
706 CACATC-ATGTGC-GCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGT-CAG
* * ** * *
14987450 GTTCTTCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCTCATGCCCG
767 GTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCG
* * * *
14987515 AGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTAA
832 AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTAT
14987580 G
897 G
*
14987581 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCAGCGAAACGAGCGTGCGGGCACTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAG
* * ** * * * *
14987645 TCGGACAG-AGGGATAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTACATGCTGTCGAT
65 CCGGCCAGAAGGG-CGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * * * *
14987709 CCTACTGTCGCAACCCTCGATCCAGT-TCGATCTTAGACTCGGAATGAACTCCGCATGCCTCAGC
129 CCTGCTATCGCAACCCTCGATCCGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* ** * *
14987773 CAACCGACGAAACGAAC-GG-A-CGGGCGGTTACTACGCCGGCCAGAGAGACGGGATGTGCAAGC
193 CAACCGACGAAACGAGCGGGCAGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGC
* * *
14987835 CATGGATCGATA-GGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
258 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
14987899 TTTATGGCTTTGTAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
323 TTTATGGC-TTGT-AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* *
14987964 GACTCGTTTTCTATTTTTCCACGATTTTTGAAACTTTTAT--GGTTTGGGATTTTTTAAAATTTT
386 GACTCGTTTTCTATTTTT-CACGATTTTTGAAACTTTT-TGCGGTTCGAGATTTTTTAAAATTTT
* * *
14988027 TTCGGAAGTG-GTTTTGGCCCCAAACTT-GTAGACATGATCCTTGTATTTTTGTTAGCGTGCAC-
449 TTCGGAAG-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
14988089 AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
513 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
14988154 TTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGT
578 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
14988219 GAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCA
643 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * * * *
14988284 CATCATGTGTGCA-ATCCCCCCCGACCCCCCTGATCGTCGGAACCCAAAT---GTC-ATCA-G--
708 CATCATGTGCGCACA--CCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGCCGGTCAGGTT
* * * *
14988341 -TCAGGT--T-CTCCGACGATGCTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGC
770 CTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
* *
14988402 CCAGCATATGCTACCGCAACCCTCGGT-C---C-GA---T---C------TG-A-T-C-T-T-
835 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * *
14988442 C---GTCTGGGAATGAACTCCGTATGCCTAAGTTAACCCAC-AGAACGAGCGCGCGGG-GCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAG
* * * ** *
14988502 CCGGCCA-AAGGGGCGGGACGCGTAAACCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGAT
65 CCGGCCAGAA-GGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * ** * *
14988566 CCTGCTACCGGCAACCCTCGGTCTGGTCCAATCTTAGACTGAGATTGAACTCCGTATGCCTAAGC
129 CCTGCTATC-GCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * *
14988631 CAACCGATGAAACAAGCGGAC-GGGTGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAG
193 CAACCGACGAAACGAGCGGGCAGCG-GGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAG
* * *
14988695 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTTCATGCCATTGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
*
14988760 TTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
14988825 ACTTGTTTTCTATTTTTCATC-ATTTTTAAAACTTTTTGCGGTT-TAGGATTTTTGAAAATTTTT
387 ACTCGTTTTCTATTTTTCA-CGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTT
** * * * * * *
14988888 TTTGAAGGAGTTTTGGCCCCAAGCTTGGTAGACGCGATCCCTGTGTTTTTGTTGGTATGCGCAAA
450 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
14988953 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
14989018 CAAACACTTCAATGGCTACTGGCAAGCAAACCTGTAAAATCTTAAATGCTC-TTAAGGGGGTGTG
580 CAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
14989082 AGTTCTCAAGGTTTGATGAGGGATAAGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCAC
644 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
**
14989147 ATCATGTGCGCACACCCCCACCCCGGCCCCCTCGATCACCGGAACCCCAATGCCGCCGGTCAGGT
709 ATCATGTGCGCACA---CC-CCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGCCGGTCAGGT
* * * * * *
14989212 TCTCTGGCGATGCTCTGGCGATGTTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
769 TCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* * * * *
14989277 CCCAGCATGTGCTGCCGCAACCCTTGGTCCAGTCTGATCTTGGGCTGGGAATGAACTCCTTATG
834 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
14989341 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * ** * * * *
14989406 TGGCCAGAGGGGCAGGATGCGTAAGCCAAGGATCAACCGGGTCCCCCTCTACGTGTTGTCGATCC
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *
14989471 TGCTA-C-CAACACTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * *
14989534 CCGACGAAACGAGCGGGTGGGCGAGTGGGCACTACG-TCGGCCAAAGAGACGGGCTACGCAAGCC
196 CCGACGAAACGAGCGGG-CAGCGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCC
* * *
14989598 GTGGAACGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTT
* *
14989663 TTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGCCGAC
324 TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
* * * * *
14989728 TCATTTTCTATTTCTCATGATTTTTGAAACTTTTTGCGGTTCAAGCTTTTTTAAAATTTTTTCGG
389 TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGG
*
14989793 AAGGAGTTTTGGCCCCAAACTTGGTAAGACGTGATCCTTGGTATTTTTGTTGGCATGCACAAAAC
454 AAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTT-GTATTTTTGTTGGCATGCACAAAAA
* *
14989858 AATTCAGCTAAAAACTCGAAAG-GTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTC
517 AATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
14989922 AAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGCGAG
581 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * * *
14989987 TTTTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCACACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* *
14990052 CATGTGCGCACACCCGCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCC
711 CATGTGCGCACACCC-CCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
* * * * * *
14990117 AGCGATGCTCCGACGATGGTACCCCGACGAAGAAAAAAGTGGCACTAGCACATGCCCGAGCCCAG
774 GGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * * *
14990182 CATGTGCTAG-CGTAACCCTCGGTTCCGGTCTGATCTTAGACTAGGAATCAA-TTCGTATG
839 CATGTGCT-GCCGCAACCCTCGG-TCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
*
14990241 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * *** * *
14990306 CGGCCAGATTGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTATATGTTGCCGTTCC
66 CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * *
14990371 TGCTGCCGCAACACTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
131 TGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
14990436 CCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGAC-GGCCAAAGAGACGGGCTGCGCAAGCC
196 CCGACGAAACGAGCGGGC-AGCGGGCGGGCACTACG-CTGGCCAGAGAGACGGGATGCGCAAGCC
14990500 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
259 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
14990534 TGTAGACACC
Statistics
Matches: 5624, Mismatches: 655, Indels: 479
0.83 0.10 0.07
Matches are distributed among these distances:
849 2 0.00
850 38 0.01
851 37 0.01
852 81 0.01
853 182 0.03
854 1 0.00
855 1 0.00
857 57 0.01
858 107 0.02
859 21 0.00
860 110 0.02
861 78 0.01
862 407 0.07
863 121 0.02
864 5 0.00
865 110 0.02
866 38 0.01
867 3 0.00
868 3 0.00
869 3 0.00
870 4 0.00
872 1 0.00
873 5 0.00
875 2 0.00
876 73 0.01
877 4 0.00
879 2 0.00
880 3 0.00
881 4 0.00
882 116 0.02
883 1 0.00
884 77 0.01
885 153 0.03
886 60 0.01
887 54 0.01
888 8 0.00
889 1 0.00
890 1 0.00
891 2 0.00
892 1 0.00
893 7 0.00
894 5 0.00
895 23 0.00
896 173 0.03
897 216 0.04
898 322 0.06
899 193 0.03
900 425 0.08
901 455 0.08
902 611 0.11
903 254 0.05
904 8 0.00
905 1 0.00
907 27 0.00
908 27 0.00
909 89 0.02
910 56 0.01
911 66 0.01
912 52 0.01
913 24 0.00
914 40 0.01
915 218 0.04
916 153 0.03
917 99 0.02
918 34 0.01
919 15 0.00
920 15 0.00
921 39 0.01
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAAGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTATCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCAGCGGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATG
CTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
TGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:14986688 original size:25 final size:26
Alignment explanation
Indices: 14986654--14986705 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
14986644 CCGGTCTGAT
14986654 CTTAGACTGGGAATGAACT-CGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14986679 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
14986705 C
1 C
14986706 CTAAGTCGAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 19 0.73
26 7 0.27
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:14987584 original size:26 final size:26
Alignment explanation
Indices: 14987555--14987604 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
14987545 TCGATCCGAT
14987555 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
14987581 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
14987605 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:14988090 original size:901 final size:890
Alignment explanation
Indices: 14986164--14990533 Score: 5570
Period size: 901 Copynumber: 4.9 Consensus size: 890
14986154 ATACAATGGT
* * *
14986164 GACGACTCATTTTTTATTTTTCACGATTTTTGAAACTTTTTACGGTTTAGGATTTTTT-AAACTT
1 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT--GGTTTAGGATTTTTTAAAATTT
* * * *
14986228 TTTCTGGAAGGATTTTTGGCCCCAAACTTAGTATACATGATCCTTGTATTTTTGTTGGCATGCAC
64 TTTC-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
14986293 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
128 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
14986358 TTTCAGACACTTTAATGGCCACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTG
193 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * *
14986423 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCGATTGC
258 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * *
14986488 ACATCATGTGCGCACACCCCCCGGCCCCCCCATTCGCCAGAACCCCAATGCAGCCGGTCAGGTTC
323 ACATCATGTGCGCACACCCCCCGGCCCCCCGA-TCGTCGGAACCCCAATGCCGTCGGTCAGGTTC
* * * *
14986553 TCCGGTGATGCTCCGACGATGGTGCCTCGACGAAGAAAAATACGGCACCAGCACATGCCTGAACC
387 TCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCC
* * * * *
14986618 CAGGATGTGTTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCGTATGCTTA
452 CAGCATGTGCTGCCGCAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCGTATGCTTA
* * * * *
14986683 GACTGGGAATGAACTCCGTATGCCTAAGTCGACCCATGAAACGAACGTGTGGGTGCTCAGTCAGG
517 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTC-GG
* * * *
14986748 -CAGAAGGGC-GAGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCCGATCCTA
581 CCAGAGGGGCAG-GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCGATCCTG
* * * * *
14986811 CTATCGCAACCCTC-AGTCTGGTCCGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAAC
645 CTACCGCAACCCTCGA-TC-CGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* *
14986875 CGACGAAATAAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGCTGCGCAAGCC-T
708 CGACG--A-AA-CGAGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGCTGCGCAAGCCGT
**
14986939 GGATCGATAGGGTGGTAGGTGGGTTTAGGGTCATCTTCATATTTCTGCATGCCAATGCCATTTTT
769 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
14987004 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACAGTGAAGTTTCATGGCAA
834 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC-GTGAAGTTTCATGGCAA
* * * * *
14987062 GATGACTCGTTTT-TA-TTTTCATGATTTTTGAAACATTTTGCGGTTCGAGATTTTTTAAAATTT
1 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG-GTTTAG-GATTTTTTAAAATTT
* * *
14987125 TTTCGAAAGGATTTTTGGCCCCAAACTTGGTAGACGTAATCCTTGTATTTTT-TTGGCATGCACA
64 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* * *
14987189 AAAACAATTTAGCTAAAAACTAAAAGTGTAACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCT
129 AAAA-AATTCAGCTAAAAACTCAAAGTGT-ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
*
14987254 ATTTCAGACACTTTAAACGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
192 ATTTCAGACACTTT-AATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* *
14987319 TGTTTA-TTCTCGAGGTTTGATGAGGGAATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAA
256 TG-TGAGTTCTCGAGGTTTGATGAGGG-ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* *
14987383 TCGCACATCAAGGTGCGGCACA-CCCCCGGCCCCCTCGAACGTCGGAACCCCAATGCCGTCGGTC
319 TCGCACATC-ATGTGC-GCACACCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGT-
* * ** * *
14987447 CAGGTTCTTCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCTCATGC
380 CAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
*
14987512 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCG
445 CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACT-CG
* *
14987577 TAAGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA-CCAGCGAAACGAGCGTGCGGGCAC
509 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGC
* ** * *
14987641 TCAGTCGGACAGAGGGATAGGATGCGCAAGCCGGGGATCGACCAGGTCCCCCTCTACATGCTGTC
573 TCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCC
* ** * * *
14987706 GATCCTACTGTCGCAACCCTCGATCCAGTTCGATCTTAGACTCGGAATGAACTCCGCATGCCTCA
638 GATCCTGCTACCGCAACCCTCGATCC-GTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * ** * * *
14987771 GCCAACCGACGAAACGAACGGACGGGCGGTTACTACGCCGGCCAGAGAGACGGGATGTGCAAGCC
702 GCCAACCGACGAAACGAGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGCTGCGCAAGCC
* * * *
14987836 ATGGATCGATA-GGTGGTAGATGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTT
767 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
14987900 TTATGGCTTTGTAAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
832 TTATGGC-TTGT-AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
*
14987961 GACGACTCGTTTTCTATTTTTCCACGATTTTTGAAACTTTTATGGTTTGGGATTTTTTAAAATTT
1 GACGACTCGTTTTCTATTTTT-CACGATTTTTGAAACTTTT-TGGTTTAGGATTTTTTAAAATTT
* * *
14988026 TTTCGGAAGTG-GTTTTGGCCCCAAACTT-GTAGACATGATCCTTGTATTTTTGTTAGCGTGCAC
64 TTTCGGAAG-GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
14988089 -AAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
128 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
14988153 TTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTG
193 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
14988218 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGC
258 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * *
14988283 ACATCATGTGTGCA-ATCCCCCCCGACCCCCCTGATCGTCGGAACCCAAAT---GTC-ATCA-G-
323 ACATCATGTGCGCACA--CCCCCCGGCCCCCC-GATCGTCGGAACCCCAATGCCGTCGGTCAGGT
* * * *
14988341 --TCAGGT--T-CTCCGACGATGCTGCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAG
385 TCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAG
* *
14988401 CCCAGCATATGCTACCGCAACCCTCGG-TC---C-GA---T---C------TG-A-TC-T-T-C-
450 CCCAGCATGTGCTGCCGCAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCGTATGCT
* * * *
14988443 --GTCTGGGAATGAACTCCGTATGCCTAAGTTAACCCAC-AGAACGAGCGCGCGGG-GCTCAGCC
515 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGTC
* * * * * ** * * *
14988504 GGCCAAAGGGGCGGGACGCGTAAACCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCT
579 GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCGATCCT
* * * * * *
14988569 GCTACCGGCAACCCTCGGTCTGGTCCAATCTTAGACTGAGATTGAACTCCGTATGCCTAAGCCAA
644 GCTACC-GCAACCCTCGATC-CGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
14988634 CCGATGAAACAAGCGGACGGGTGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
707 CCGACGAAACGAGCGG--GCG-GGCGGGCACTACGCCGGCCAAAGAGACGGGCTGCGCAAGCCGT
* * *
14988699 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTTCATGCCATTGCCATTTTT
769 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
*
14988764 ATGGCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
834 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * *
14988821 GACGACTTGTTTTCTATTTTTCATC-ATTTTTAAAACTTTTTGCGGTTTAGGATTTTTGAAAATT
1 GACGACTCGTTTTCTATTTTTCA-CGATTTTTGAAACTTTTT--GGTTTAGGATTTTTTAAAATT
** * * * * * *
14988885 TTTTTTGAAGGAGTTTTGGCCCCAAGCTTGGTAGACGCGATCCCTGTGTTTTTGTTGGTATGCGC
63 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
14988950 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
128 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
14989015 TTTCAAACACTTCAATGGCTACTGGCAAGCAAACCTGTAAAATCTTAAATGCTC-TTAAGGGGGT
193 TTTCAGACACTTTAATGGCTACTGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGT
* * *
14989079 GTGAGTTCTCAAGGTTTGATGAGGGATAAGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCG
257 GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
** *
14989144 CACATCATGTGCGCACACCCCCACCCCGGCCCCCTCGATCACCGGAACCCCAATGCCGCCGGTCA
322 CACATCATGTGCGCACA---CC-CCCCGGCCCCC-CGATCGTCGGAACCCCAATGCCGTCGGTCA
* * * * * *
14989209 GGTTCTCTGGCGATGCTCTGGCGATGTTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
382 GGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCC
* * * * *
14989274 GAGCCCAGCATGTGCTGCCGCAACCCTTGG-TCCAGTCTGATCTTGGGCTGGGAATGAACTCCTT
447 GAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGA-TCTGATCTTAGACTGGGAATGAACT-CGT
14989338 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
510 ATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* ** * * * *
14989403 AG-CTGGCCAGAGGGGCAGGATGCGTAAGCCAAGGATCAACCGGGTCCCCCTCTACGTGTTGTCG
575 AGTC-GGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCG
* *
14989467 ATCCTGCTA-C-CAACACTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
639 ATCCTGCTACCGCAACCCTCGATCCGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * *
14989530 CCAACCGACGAAACGAGCGGGTGGGCGAGTGGGCACTACGTCGGCCAAAGAGACGGGCTACGCAA
703 CCAACCGACGAAACGAGCGGGCGGGC----GGGCACTACGCCGGCCAAAGAGACGGGCTGCGCAA
* *
14989595 GCCGTGGAACGATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
764 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
14989660 TTTTTATGTCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
829 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * * *
14989722 GCCGACTCATTTTCTATTTCTCATGATTTTTGAAACTTTTTGCGGTTCAAGCTTTTTTAAAATTT
1 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT--GGTTTAGGATTTTTTAAAATTT
14989787 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAAGACGTGATCCTTGGTATTTTTGTTGGCATGCA
64 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGT-AGACGTGATCCTT-GTATTTTTGTTGGCATGCA
* *
14989852 CAAAACAATTCAGCTAAAAACTCGAAAG-GTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
127 CAAAAAAATTCAGCTAAAAACTC-AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * * *
14989916 CAATTCAAACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGG
191 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
* * * * *
14989981 TGCGAGTTTTCAAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATC
256 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
14990046 ACACATCATGTGCGCACACCCGCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGG
321 GCACATCATGTGCGCACACCC-CCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGG
* * * * * *
14990111 TTCTCCAGCGATGCTCCGACGATGGTACCCCGACGAAGAAAAAAGTGGCACTAGCACATGCCCGA
384 TTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGA
* * * * *
14990176 GCCCAGCATGTGCTAG-CGTAACCCTCGGTTCCGGTCTGATCTTAGACTAGGAATCAATTCGTAT
449 GCCCAGCATGTGCT-GCCGCAACCCTCGGTT-CGATCTGATCTTAGACTGGGAATGAACTCGTAT
14990240 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
512 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG
** * * * * *
14990305 TCGGCCAGATTGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTATATGTTGCCGTTC
577 TCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCGATC
* * * *
14990370 CTGCTGCCGCAACACTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
642 CTGCTACCGCAACCCTCGATCCGTTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
*
14990435 ACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGACGGCCAAAGAGACGGGCTGCGCAAGCC
706 ACCGACGAAACGA----GCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGCTGCGCAAGCC
14990500 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
767 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
14990534 TGTAGACACC
Statistics
Matches: 3029, Mismatches: 330, Indels: 222
0.85 0.09 0.06
Matches are distributed among these distances:
857 60 0.02
858 106 0.03
859 20 0.01
860 112 0.04
861 78 0.03
862 224 0.07
863 28 0.01
864 4 0.00
865 26 0.01
866 2 0.00
867 2 0.00
868 2 0.00
869 3 0.00
870 1 0.00
873 5 0.00
875 1 0.00
876 74 0.02
879 2 0.00
880 2 0.00
881 2 0.00
883 2 0.00
884 71 0.02
885 1 0.00
887 5 0.00
890 1 0.00
891 2 0.00
892 1 0.00
893 6 0.00
894 5 0.00
895 26 0.01
896 168 0.06
897 131 0.04
898 226 0.07
899 117 0.04
900 397 0.13
901 435 0.14
902 417 0.14
903 252 0.08
904 3 0.00
906 9 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (890 bp):
GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGGTTTAGGATTTTTTAAAATTTTT
TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
AAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
TCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
GTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGGTTCGATCTGATCTTAGACTGGGAATGAACTCGTATGCTTAGACT
GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGA
GGGGCAGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACATGCTGCCGATCCTGCTACCG
CAACCCTCGATCCGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA
CGAGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGCTGCGCAAGCCGTGGATCGATAGGG
TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAA
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
Found at i:14990313 original size:900 final size:899
Alignment explanation
Indices: 14988445--14990533 Score: 3017
Period size: 900 Copynumber: 2.3 Consensus size: 899
14988435 TGATCTTCGT
* *
14988445 CTGGGAATGAACTCCGTATGCCTAAGTTAACCCAC-AGAACGAGCGCGCGGG-GCTCAGCCGGCC
1 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAG-CGGCC
* * * *** * * *
14988508 AAAGGGGCGGGACGCGTAAACCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTA
64 AGAGGGGCGGGATGCGTAAGCCGGGGATCAACCGGGTCCCCCTCTACGTGTTGCCGATCCTGCTA
* * * ** * *
14988573 CCGGCAACCCTCGGTCTGGTCCAATCTTAGACTGAGATTGAACTCCGTATGCCTAAGCCAACCGA
129 -C-GCAACACTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
* * * * * * * * *
14988638 TGAAACAAGCGGACGGGTGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
192 CGAAACGAGCGGGCGGGCGGCGGGCACTACGACGGCCAAAGAGACGGGCTGCGCAAGCCGTGGAT
* *
14988703 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTTCATGCCATTGCCATTTTTATGG
257 CGATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTGCATGCCAATGCCATTTTTATGG
**
14988768 CTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTT
322 CTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTT
* * * **
14988833 TCTATTTTTCATCATTTTTAAAACTTTTTGCGGTTTAGGATTTTTGAAAATTTTTTTTGAAGGAG
387 TCTATTTCTCATCATTTTTAAAACTTTTTGCGGTTCAAGATTTTTGAAAATTTTTTCGGAAGGAG
* * * *
14988898 TTTTGGCCCCAAGCTTGGTAGACGCGATCCCTGTGTTTTTGTTGGTATGCGCAAAAAAATTCAGC
452 TTTTGGCCCCAAACTTGGTAGACGCGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
14988963 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTC
517 TAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAAACACTTC
* *
14989028 AATGGCTACTGGCAAGCAAACCTGTAAAATCTTAAATGCTCTTAAGGGGGTGTGAGTTCTCAAGG
582 AATGGCTACTGGCAAGCAAACCTGTAAAATCTCAAATGCTCTTAAGGGGGTGCGAGTTCTCAAGG
* *
14989093 TTTGATGAGGGATAAGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
647 TTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGC
* * **
14989158 ACACCCCCACCCCGGCCCCCTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCTGGCGAT
712 ACA-CCCCACCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGATCAGGTTCTCCAGCGAT
* * * ** *
14989223 GCTCTGGCGATGTTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
776 GCTCCGACGATGGTACCCCGACGAAGAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
* * * * * *
14989288 CTGCCGCAACCCTTGGTCCAGTCTGATCTTGGGCTGGGAATGAACTCCTTATGCTTAGA
841 CTGCCGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATCAACTCCGTATGCTTAGA
14989347 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCA
1 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-GGCCA
* ** *
14989412 GAGGGGCAGGATGCGTAAGCCAAGGATCAACCGGGTCCCCCTCTACGTGTTGTCGATCCTGCTAC
65 GAGGGGCGGGATGCGTAAGCCGGGGATCAACCGGGTCCCCCTCTACGTGTTGCCGATCCTGCTAC
*
14989477 -CAACACTCGATCCGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
130 GCAACACTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA
* * * * *
14989541 AACGAGCGGGTGGGCGAGTGGGCACTACGTCGGCCAAAGAGACGGGCTACGCAAGCCGTGGAACG
195 AACGAGCGGGCGGGCG-GCGGGCACTACGACGGCCAAAGAGACGGGCTGCGCAAGCCGTGGATCG
* * *
14989606 ATAGGGTGGTAGGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGTCT
259 ATAGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTGCATGCCAATGCCATTTTTATGGCT
* *
14989671 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGCCGACTCATTTTC
324 TGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTC
* * * *
14989736 TATTTCTCATGATTTTTGAAACTTTTTGCGGTTCAAGCTTTTTTAAAATTTTTTCGGAAGGAGTT
389 TATTTCTCATCATTTTTAAAACTTTTTGCGGTTCAAGATTTTTGAAAATTTTTTCGGAAGGAGTT
* * *
14989801 TTGGCCCCAAACTTGGTAAGACGTGATCCTTGGTATTTTTGTTGGCATGCACAAAACAATTCAGC
454 TTGGCCCCAAACTTGGT-AGACGCGATCCCT-GTATTTTTGTTGGCATGCACAAAAAAATTCAGC
*
14989866 TAAAAACTCGAAAG-GTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAAACACTT
517 TAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAAACACTT
* * * *
14989930 TAATGGCTACTGG-TAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGCGAGTTTTCAA
581 CAATGGCTACTGGCAAGCAAACCTGTAAAATCTCAAATGC-TCTTAAGGGGGTGCGAGTTCTCAA
*
14989994 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCACACATCATGTGC
645 GGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGC
* ** *
14990059 GCACA-CCC-GCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGATCAGGTTCTCCAGCGA
710 GCACACCCCACCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGATCAGGTTCTCCAGCGA
* *
14990122 TGCTCCGACGATGGTACCCCGACGAAGAAAAAAGTGGCACTAGCACATGCCCGAGCCCAGCATGT
775 TGCTCCGACGATGGTACCCCGACGAAGAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGT
* * *
14990187 GCTAG-CGTAACCCTCGGTTCCGGTCTGATCTTAGACTAGGAATCAA-TTCGTATGCTTAGA
840 GCT-GCCGCAACCCTCGG-TCCAGTCTGATCTTAGACTAGGAATCAACTCCGTATGCTTAGA
14990247 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCA
1 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CGGCCA
** * ** * *
14990312 GATTGGCGGGATGCGCAAGCCGGGGATCAACCGGGTCCCCCTCTATATGTTGCCGTTCCTGCTGC
65 GAGGGGCGGGATGCGTAAGCCGGGGATCAACCGGGTCCCCCTCTACGTGTTGCCGATCCTGCT-A
*
14990377 CGCAACACTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACG
129 CGCAACACTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG
14990442 AAACGAGCGGGCGGGCGGGCGGGCACTACGACGGCCAAAGAGACGGGCTGCGCAAGCCGTGGATC
194 AAACGAGCGGGCGGGC-GGCGGGCACTACGACGGCCAAAGAGACGGGCTGCGCAAGCCGTGGATC
14990507 GATAGGGTGGTAGGTGGGTTTAGGCAC
258 GATAGGGTGGTAGGTGGGTTTAGGCAC
14990534 TGTAGACACC
Statistics
Matches: 1057, Mismatches: 116, Indels: 28
0.88 0.10 0.02
Matches are distributed among these distances:
900 312 0.30
901 262 0.25
902 229 0.22
903 251 0.24
904 3 0.00
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (899 bp):
CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCGGCCAG
AGGGGCGGGATGCGTAAGCCGGGGATCAACCGGGTCCCCCTCTACGTGTTGCCGATCCTGCTACG
CAACACTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
ACGAGCGGGCGGGCGGCGGGCACTACGACGGCCAAAGAGACGGGCTGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTCCATATTTCTGCATGCCAATGCCATTTTTATGGCTTG
TAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTA
TTTCTCATCATTTTTAAAACTTTTTGCGGTTCAAGATTTTTGAAAATTTTTTCGGAAGGAGTTTT
GGCCCCAAACTTGGTAGACGCGATCCCTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAAACACTTCAATG
GCTACTGGCAAGCAAACCTGTAAAATCTCAAATGCTCTTAAGGGGGTGCGAGTTCTCAAGGTTTG
ATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACAC
CCCACCCCGGCCCCCCCGATCACCGGAACCCCAATGCCGCCGATCAGGTTCTCCAGCGATGCTCC
GACGATGGTACCCCGACGAAGAAAAAAGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
GCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATCAACTCCGTATGCTTAGA
Found at i:14990628 original size:17 final size:19
Alignment explanation
Indices: 14990601--14990647 Score: 53
Period size: 17 Copynumber: 2.6 Consensus size: 19
14990591 GCCCAATGCA
*
14990601 ATTTTTACTTTGTATTA-T
1 ATTTTTTCTTTGTATTATT
* *
14990619 -TTTTTTCTTTTTTTTATT
1 ATTTTTTCTTTGTATTATT
14990637 ATTTTTTCTTT
1 ATTTTTTCTTT
14990648 CTTTCTTTTC
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
17 13 0.54
18 1 0.04
19 10 0.42
ACGTcount: A:0.13, C:0.06, G:0.02, T:0.79
Consensus pattern (19 bp):
ATTTTTTCTTTGTATTATT
Found at i:14990639 original size:23 final size:23
Alignment explanation
Indices: 14990613--14990656 Score: 63
Period size: 23 Copynumber: 1.9 Consensus size: 23
14990603 TTTTACTTTG
*
14990613 TATTATTTT-TTTCTTTTTTTTAT
1 TATT-TTTTCTTTCTTTCTTTTAT
14990636 TATTTTTTCTTTCTTTCTTTT
1 TATTTTTTCTTTCTTTCTTTT
14990657 CTTTTGTATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 4 0.21
23 15 0.79
ACGTcount: A:0.09, C:0.09, G:0.00, T:0.82
Consensus pattern (23 bp):
TATTTTTTCTTTCTTTCTTTTAT
Found at i:14990782 original size:22 final size:24
Alignment explanation
Indices: 14990757--14990811 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 24
14990747 TATAGTTATA
14990757 TATTTATTATTA-TA-TTATAATT
1 TATTTATTATTATTATTTATAATT
*
14990779 TATTTATTATTATTATTTTATATTT
1 TATTTATTATTATTA-TTTATAATT
14990804 TATTTATT
1 TATTTATT
14990812 TTGTATTTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
22 12 0.41
23 2 0.07
25 15 0.52
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (24 bp):
TATTTATTATTATTATTTATAATT
Found at i:14990818 original size:11 final size:11
Alignment explanation
Indices: 14990757--14990825 Score: 52
Period size: 11 Copynumber: 6.0 Consensus size: 11
14990747 TATAGTTATA
*
14990757 TATTTAT-TAT
1 TATTTATATTT
*
14990767 TATATTATAATT
1 TAT-TTATATTT
14990779 TATTTATTATTAT
1 TATTTA-TATT-T
14990792 TATTTTATATTT
1 TA-TTTATATTT
14990804 TATTTAT-TTT
1 TATTTATATTT
*
14990814 GTATTTTTATTT
1 -TATTTATATTT
14990826 ATCTAATTAT
Statistics
Matches: 48, Mismatches: 4, Indels: 12
0.75 0.06 0.19
Matches are distributed among these distances:
10 6 0.12
11 18 0.38
12 13 0.27
13 7 0.15
14 4 0.08
ACGTcount: A:0.28, C:0.00, G:0.01, T:0.71
Consensus pattern (11 bp):
TATTTATATTT
Found at i:14990823 original size:17 final size:16
Alignment explanation
Indices: 14990757--14990827 Score: 67
Period size: 16 Copynumber: 4.4 Consensus size: 16
14990747 TATAGTTATA
14990757 TATTTATTATTATATTAT
1 TATTTATT-TTATATT-T
* *
14990775 AATTTA-TTTAT-TAT
1 TATTTATTTTATATTT
14990789 TA-TTATTTTATATTT
1 TATTTATTTTATATTT
*
14990804 TATTTATTTTGTATTTT
1 TATTTATTTTATA-TTT
14990821 TATTTAT
1 TATTTAT
14990828 CTAATTATAT
Statistics
Matches: 44, Mismatches: 5, Indels: 9
0.76 0.09 0.16
Matches are distributed among these distances:
13 3 0.07
14 7 0.16
15 5 0.11
16 13 0.30
17 11 0.25
18 5 0.11
ACGTcount: A:0.28, C:0.00, G:0.01, T:0.70
Consensus pattern (16 bp):
TATTTATTTTATATTT
Found at i:14991412 original size:20 final size:20
Alignment explanation
Indices: 14991389--14991426 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
14991379 TTTCGATGAA
*
14991389 ATTTTCCAGATTTCGGCCAC
1 ATTTTCCAGAATTCGGCCAC
14991409 ATTTTCCAGAATTCGGCC
1 ATTTTCCAGAATTCGGCC
14991427 GATATTCAAC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.21, C:0.29, G:0.16, T:0.34
Consensus pattern (20 bp):
ATTTTCCAGAATTCGGCCAC
Found at i:14991836 original size:13 final size:12
Alignment explanation
Indices: 14991818--14991875 Score: 57
Period size: 11 Copynumber: 4.9 Consensus size: 12
14991808 TTCATCTTTA
14991818 TTTTTTTTA-TT
1 TTTTTTTTATTT
* *
14991829 TTTGTTTTACTT
1 TTTTTTTTATTT
* *
14991841 TTCTTTAT-TTT
1 TTTTTTTTATTT
14991852 TTTTTTTTATTT
1 TTTTTTTTATTT
14991864 ATTTTTTTTATT
1 -TTTTTTTTATT
14991876 ATTCTATTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
11 16 0.43
12 10 0.27
13 11 0.30
ACGTcount: A:0.10, C:0.03, G:0.02, T:0.84
Consensus pattern (12 bp):
TTTTTTTTATTT
Found at i:14991871 original size:17 final size:17
Alignment explanation
Indices: 14991818--14991885 Score: 68
Period size: 17 Copynumber: 4.0 Consensus size: 17
14991808 TTCATCTTTA
14991818 TTTTTTTTATTT-TTGTT
1 TTTTTTTTATTTATT-TT
** *
14991835 TTACTTTTCTTTATTTT
1 TTTTTTTTATTTATTTT
14991852 TTTTTTTTATTTA-TTT
1 TTTTTTTTATTTATTTT
*
14991868 TTTTTATTATTCTATTTT
1 TTTTTTTTATT-TATTTT
14991886 CTTTAAATGA
Statistics
Matches: 41, Mismatches: 7, Indels: 5
0.77 0.13 0.09
Matches are distributed among these distances:
16 13 0.32
17 23 0.56
18 5 0.12
ACGTcount: A:0.12, C:0.04, G:0.01, T:0.82
Consensus pattern (17 bp):
TTTTTTTTATTTATTTT
Found at i:14991890 original size:17 final size:16
Alignment explanation
Indices: 14991814--14991890 Score: 54
Period size: 15 Copynumber: 4.8 Consensus size: 16
14991804 TCTTTTCATC
*
14991814 TTTATTTTTTTTATT-
1 TTTATTTTCTTTATTA
* *
14991829 TTTGTTTTACTTTTCTTTA
1 TTTATTTT-C-TTT-ATTA
14991848 TTT-TTTT-TTT-TTA
1 TTTATTTTCTTTATTA
*
14991861 TTTATTTTTTTTATTA
1 TTTATTTTCTTTATTA
14991877 TTCTATTTTCTTTA
1 TT-TATTTTCTTTA
14991891 AATGAAAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 14
0.74 0.06 0.21
Matches are distributed among these distances:
13 6 0.12
14 4 0.08
15 13 0.26
16 5 0.10
17 13 0.26
18 6 0.12
19 3 0.06
ACGTcount: A:0.13, C:0.05, G:0.01, T:0.81
Consensus pattern (16 bp):
TTTATTTTCTTTATTA
Found at i:14991970 original size:60 final size:60
Alignment explanation
Indices: 14991896--14992247 Score: 509
Period size: 60 Copynumber: 5.9 Consensus size: 60
14991886 CTTTAAATGA
* * *
14991896 AAATCAAAACTTTCAAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAG
1 AAATC-AAATTTTC-AAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
*** *
14991958 AAAT-AAATTTTC-AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
* * *
14992016 AAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGCATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
*
14992076 AAATCAAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
* *
14992136 AAATCAAATTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAG
1 AAATCAAATTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
**
14992196 AAAT-AAATTTTC---AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATCAAATTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCC
14992248 CTACACAAAA
Statistics
Matches: 266, Mismatches: 22, Indels: 10
0.89 0.07 0.03
Matches are distributed among these distances:
56 37 0.14
58 44 0.17
59 15 0.06
60 166 0.62
62 4 0.02
ACGTcount: A:0.45, C:0.09, G:0.13, T:0.34
Consensus pattern (60 bp):
AAATCAAATTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
Found at i:14996934 original size:119 final size:121
Alignment explanation
Indices: 14996722--14997012 Score: 401
Period size: 119 Copynumber: 2.4 Consensus size: 121
14996712 CATGATTGTC
* * *
14996722 AAGGAGCATTTTACTTTTCAAAGTTTCGT-TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG
1 AAGGAGCAATTTACTTCTCAAAG--TCGTGTGCCTCTGTTTAGAGGACCAATTTACTTTTCAAAG
*
14996786 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTAC-TTCCAAAGTCGT-GTGCCTCTGTTT
64 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCATGGTGCCTCTGTTT
** *
14996842 -AGGAGCAATTTACTTCTCAAAGTCGTGGTGCCTCTACTTAGAGGACCAATTTATTTTTCAAAGT
1 AAGGAGCAATTTACTTCTCAAAGTCGT-GTGCCTCTGTTTAGAGGACCAATTTACTTTTCAAAGT
14996906 CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCAAAGTCATGGTGCCTCTGTTT
65 CGTGGTGCCTCTGTTTAGAGGAGCAATTTAC-TTTCCAAAGTCATGGTGCCTCTGTTT
* *
14996964 AGAGGAGCAATTTAGGTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGGA
1 A-AGGAGCAATTTA--CTTCTCAAAGTCG-TGTGCCTCTGTTTAGAGGA
14997013 GCTTTGGTAA
Statistics
Matches: 150, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
117 4 0.03
119 83 0.55
121 11 0.07
122 12 0.08
124 12 0.08
126 27 0.18
127 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (121 bp):
AAGGAGCAATTTACTTCTCAAAGTCGTGTGCCTCTGTTTAGAGGACCAATTTACTTTTCAAAGTC
GTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCCAAAGTCATGGTGCCTCTGTTT
Found at i:14996959 original size:42 final size:41
Alignment explanation
Indices: 14996723--14997014 Score: 398
Period size: 41 Copynumber: 7.1 Consensus size: 41
14996713 ATGATTGTCA
*
14996723 AGGAGCATTTTACTTTTCAAAGTTTCGT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG--TCGTGGTGCCTCTGTTTAG
14996764 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
14996805 AGGAGCAATTTAC-TTCCAAAGTCGT-GTGCCTCTGTTT--
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* **
14996842 AGGAGCAATTTACTTCTCAAAGTCGTGGTGCCTCTACTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
14996883 AGGACCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
14996924 AGGAGCAATTTACTTTTCCAAAGTCATGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTGTTTAG
* * *
14996966 AGGAGCAATTTAGGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTT-TCAAAGTCGTGGTGCCTCTGTTTAG
14997009 AGGAGC
1 AGGAGC
14997015 TTTGGTAAAA
Statistics
Matches: 224, Mismatches: 18, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
37 13 0.06
38 10 0.04
39 26 0.12
40 11 0.05
41 98 0.44
42 35 0.16
43 30 0.13
44 1 0.00
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (41 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:14997055 original size:11 final size:11
Alignment explanation
Indices: 14997021--14997049 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
14997011 GAGCTTTGGT
14997021 AAAAAAAAAAC
1 AAAAAAAAAAC
14997032 AAAAAAAAAAC
1 AAAAAAAAAAC
14997043 AAAAAAA
1 AAAAAAA
14997050 TGACAATGTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Done.