Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 77 of 195
Found at i:14997347 original size:12 final size:12
Alignment explanation
Indices: 14997330--14997406 Score: 53
Period size: 11 Copynumber: 7.1 Consensus size: 12
14997320 TATATAGTTA
14997330 TATATTTATTAT
1 TATATTTATTAT
*
14997342 TATA-TTATAAT
1 TATATTTATTAT
14997353 T-TATTTATTA-
1 TATATTTATTAT
*
14997363 T-T-GTTATTAT
1 TATATTTATTAT
14997373 TAT-TTTA-TAT
1 TATATTTATTAT
* *
14997383 TTTATTTATTTT
1 TATATTTATTAT
*
14997395 TGTATTT-TTAT
1 TATATTTATTAT
14997406 T
1 T
14997407 TATCTAATTG
Statistics
Matches: 52, Mismatches: 8, Indels: 11
0.73 0.11 0.15
Matches are distributed among these distances:
9 6 0.12
10 10 0.19
11 24 0.46
12 12 0.23
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.70
Consensus pattern (12 bp):
TATATTTATTAT
Found at i:14997349 original size:19 final size:18
Alignment explanation
Indices: 14997314--14997409 Score: 76
Period size: 18 Copynumber: 5.4 Consensus size: 18
14997304 TATGTATATG
14997314 TATTT-TTA-TATAGTTAT
1 TATTTATTATTATA-TTAT
14997331 ATATTTATTATTATATTAT
1 -TATTTATTATTATATTAT
* *
14997350 AATTTATTTATTATTGTTAT
1 TATTTA-TTATTA-TATTAT
14997370 TA-TTATT-TTATATT-T
1 TATTTATTATTATATTAT
* * *
14997385 TATTTATTTTTGTATTTT
1 TATTTATTATTATATTAT
14997403 TATTTAT
1 TATTTAT
14997410 CTAATTGTAT
Statistics
Matches: 66, Mismatches: 5, Indels: 14
0.78 0.06 0.16
Matches are distributed among these distances:
15 3 0.05
16 8 0.12
17 9 0.14
18 20 0.30
19 16 0.24
20 10 0.15
ACGTcount: A:0.28, C:0.00, G:0.03, T:0.69
Consensus pattern (18 bp):
TATTTATTATTATATTAT
Found at i:14997373 original size:31 final size:30
Alignment explanation
Indices: 14997335--14997409 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 30
14997325 AGTTATATAT
14997335 TTATTATTATATTATAATTTATTTATTATTG
1 TTATTATTAT-TTATAATTTATTTATTATTG
* *
14997366 TTATTATTATTTTATATTTTATTTATTTTTG
1 TTATTATTA-TTTATAATTTATTTATTATTG
*
14997397 -TATTTTTATTTAT
1 TTATTATTATTTAT
14997410 CTAATTGTAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
29 5 0.12
30 7 0.17
31 27 0.68
32 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.71
Consensus pattern (30 bp):
TTATTATTATTTATAATTTATTTATTATTG
Found at i:14997438 original size:28 final size:26
Alignment explanation
Indices: 14997400--14997466 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 26
14997390 ATTTTTGTAT
**
14997400 TTTTATTTATCTAATTGTATATCTGTTA
1 TTTTATTTATCT-ATAATATATCT-TTA
*
14997428 TTTTATTTATCCTATAATATATCTTTT
1 TTTTATTTAT-CTATAATATATCTTTA
14997455 TTTTATTTATCT
1 TTTTATTTATCT
14997467 GTTCTAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 2 0.06
27 12 0.34
28 19 0.54
29 2 0.06
ACGTcount: A:0.24, C:0.09, G:0.03, T:0.64
Consensus pattern (26 bp):
TTTTATTTATCTATAATATATCTTTA
Found at i:14998415 original size:15 final size:14
Alignment explanation
Indices: 14998392--14998458 Score: 55
Period size: 15 Copynumber: 4.6 Consensus size: 14
14998382 GTTTATTTAA
*
14998392 TATTCTTTTCATCTT
1 TATT-TTTTTATCTT
*
14998407 TATTTTTTTTATTTT
1 TA-TTTTTTTATCTT
* *
14998422 TGTTTTATTTTTCTT
1 TATTTT-TTTATCTT
*
14998437 TA-TTTTTTATTTT
1 TATTTTTTTATCTT
14998450 TATTTTTTT
1 TATTTTTTT
14998459 TATTATTCTA
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
13 8 0.20
14 13 0.32
15 18 0.44
16 2 0.05
ACGTcount: A:0.12, C:0.06, G:0.01, T:0.81
Consensus pattern (14 bp):
TATTTTTTTATCTT
Found at i:14998427 original size:6 final size:6
Alignment explanation
Indices: 14998412--14998465 Score: 51
Period size: 6 Copynumber: 9.3 Consensus size: 6
14998402 ATCTTTATTT
* * *
14998412 TTTTTA TTTTT- GTTTTA TTTTTC TTTAT- TTTTTA TTTTTA TTTTT-
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
14998457 TTTATTA TT
1 TTT-TTA TT
14998466 CTATTTTCTT
Statistics
Matches: 39, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
5 11 0.28
6 26 0.67
7 2 0.05
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:14998432 original size:10 final size:9
Alignment explanation
Indices: 14998405--14998462 Score: 57
Period size: 9 Copynumber: 6.7 Consensus size: 9
14998395 TCTTTTCATC
14998405 TTTATTTTT
1 TTTATTTTT
14998414 TTTATTTTT
1 TTTATTTTT
* *
14998423 GTT-TTATT
1 TTTATTTTT
* *
14998431 TTTCTTTAT
1 TTTATTTTT
*
14998440 TTT-TTATT
1 TTTATTTTT
14998448 TTTATTTTT
1 TTTATTTTT
14998457 TTTATT
1 TTTATT
14998463 ATTCTATTTT
Statistics
Matches: 39, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
8 12 0.31
9 27 0.69
ACGTcount: A:0.12, C:0.02, G:0.02, T:0.84
Consensus pattern (9 bp):
TTTATTTTT
Found at i:14998444 original size:17 final size:17
Alignment explanation
Indices: 14998412--14998465 Score: 65
Period size: 17 Copynumber: 3.1 Consensus size: 17
14998402 ATCTTTATTT
14998412 TTTTTATTT-TTGTTTTA
1 TTTTTATTTATT-TTTTA
*
14998429 TTTTTCTTTATTTTTTA
1 TTTTTATTTATTTTTTA
*
14998446 TTTTTATTTTTTTTATTA
1 TTTTTATTTATTTT-TTA
14998464 TT
1 TT
14998466 CTATTTTCTT
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
17 25 0.78
18 7 0.22
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.83
Consensus pattern (17 bp):
TTTTTATTTATTTTTTA
Found at i:14998470 original size:17 final size:16
Alignment explanation
Indices: 14998419--14998477 Score: 59
Period size: 17 Copynumber: 3.6 Consensus size: 16
14998409 TTTTTTTTAT
14998419 TTTTGTTTTATTTTTCT-
1 TTTT-TTTTA-TTTTCTA
14998436 TTATTTTTTATTTT-TA
1 TT-TTTTTTATTTTCTA
14998452 TTTTTTTTATTATTCTA
1 TTTTTTTTATT-TTCTA
*
14998469 TTTTCTTTA
1 TTTTTTTTA
14998478 AATGAAAATC
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
15 10 0.27
16 8 0.22
17 17 0.46
18 2 0.05
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTTTTTATTTTCTA
Found at i:14998611 original size:32 final size:32
Alignment explanation
Indices: 14998575--14998669 Score: 78
Period size: 32 Copynumber: 3.1 Consensus size: 32
14998565 TTTTTGAGGA
14998575 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
1 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
* ** *
14998607 AAAGTTTCAAA--AAAAATATTT--TT-GAGGA--
1 AAAG-TTGAAAGTATCAAT-TTTCCTTGGA-AATC
14998635 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
1 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
14998667 AAA
1 AAA
14998670 TTTTCAAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
27 5 0.11
28 7 0.16
29 6 0.13
30 6 0.13
31 6 0.13
32 10 0.22
33 5 0.11
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (32 bp):
AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
Found at i:14998635 original size:118 final size:117
Alignment explanation
Indices: 14998493--14999011 Score: 722
Period size: 118 Copynumber: 4.4 Consensus size: 117
14998483 AAATCAAAAC
* * *
14998493 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-AAATTTTCA
1 TTTC-AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCA
*** * * *
14998557 AAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAG
65 AAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-AAAT
14998611 TTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCA
1 TTTC-AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC-
*
14998676 AAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAAT
64 AAAAAAATATTTTTGA-GGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAAT
* *
14998730 TTTC-GAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTCTC
1 TTTCAAAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
* *
14998794 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTATAAATAAAT
64 -AAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAAT
*** * *
14998849 TTTCAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTAAA
1 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAA
* * *
14998914 AAAAACTATTTTTGAGGAAAAGTTGAAAATATCAATTTTCATCAAAAATAAAT
66 AAAAA-TATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAAT
*
14998967 TTTC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
14999012 CTACACAAAA
Statistics
Matches: 366, Mismatches: 27, Indels: 17
0.89 0.07 0.04
Matches are distributed among these distances:
117 50 0.14
118 147 0.40
119 121 0.33
120 48 0.13
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.35
Consensus pattern (117 bp):
TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAA
AAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAAT
Found at i:14998642 original size:60 final size:60
Alignment explanation
Indices: 14998483--14999011 Score: 709
Period size: 60 Copynumber: 8.9 Consensus size: 60
14998473 CTTTAAATGA
* * *
14998483 AAATCAAAACTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAG
1 AAATC-AAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
*** *
14998544 AAAT-AAATTTTC-AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
* *
14998602 AAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
14998662 AAATCAAATTTTCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAG
1 AAATCAAATTTTCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAG
* *** *
14998722 AAAT-AAATTTTCGAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
* * * *
14998781 AAATCAAATTCTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAT
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
*** *
14998841 AAAT-AAATTTTC-AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
* * * * *
14998899 AAATCAAAGTTT-AAAAAAAACTATTTTTGAGGAAAAGTTGAAAATATCAATTTTCATCAA
1 AAATCAAATTTTCAAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
*
14998959 AAAT-AAATTTTC--AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
14999012 CTACACAAAA
Statistics
Matches: 411, Mismatches: 48, Indels: 22
0.85 0.10 0.05
Matches are distributed among these distances:
57 32 0.08
58 93 0.23
59 91 0.22
60 191 0.46
61 4 0.01
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.34
Consensus pattern (60 bp):
AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
Found at i:15000106 original size:26 final size:26
Alignment explanation
Indices: 15000070--15000122 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15000060 CTGATTTGAT
15000070 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
15000096 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
15000122 C
1 C
15000123 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:15003615 original size:26 final size:26
Alignment explanation
Indices: 15003578--15003630 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15003568 CCGGTCCGAT
*
15003578 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
15003604 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
15003630 C
1 C
15003631 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:15003890 original size:904 final size:900
Alignment explanation
Indices: 14999486--15009625 Score: 11462
Period size: 904 Copynumber: 11.5 Consensus size: 900
14999476 ATGTTATGAC
* * ** * *
14999486 AGGCACATCTTCATCTTTCTACGCGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGAC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
14999551 CCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* *
14999616 ACTTTTTACGGTTTGGGATTTTTTAAAATTGTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAG
131 ACTTTTTACGGTTCGAGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
14999680 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
195 ACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
14999745 ATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAAGGGCTACTGGCAGCAAACC
260 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
14999810 TGTAAAATCTGAAATGCTTTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGAGATA-GGGGCC
325 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
14999874 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTG-CACA-CCCCCCGA-CCCCTCG
390 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACACCCCCCCGACCCCCT-G
* * * * * * * * *
14999936 ATCGTCGGAAACCCAATGCTGCCGGTTAAGTTCTTCGGAGATGCTCCGGCGATGGTTCCCCGACG
454 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACG
* * * * * * *
15000001 AAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAATCCTCGGTCTGATT
519 AAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
* * **
15000066 TGATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
584 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
** * * *
15000131 AGTCACGAAATGAGTGTAC-GGCGCTCAGTCGGCCAGA-GGGCGGGATGCGCAAGCCGGGGATCG
649 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCGG-CAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * *
15000194 ATCGGGTCCCCCTCTGTGTGCTGCTGATCCTTCTATCGTAACCCTCT-CTACGGTCTGATCTTAG
713 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCT-TGGTCCGGTCTGATCTTAG
* *
15000258 ACTTGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA----GC-GGGC-GGCGGGCACT
777 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGCGGGCGGGCACT
* * *
15000317 ACGTCGGCCAGAGAAACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
842 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
15000376 AGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATAGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
15000441 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * *
15000506 ACTTTTTACGGTCCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTCGCCCC-AACTTGGTA-A
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
15000569 --TGATCCTTGTATTTTTGTTGGCATGCATACAAAAATTCAGCTAGAAACTCGAA-TGTACAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
15000631 TTTTGTGGCTATTTGAAAAAAGTATCCTCATTTCAGACACTTTAATGGCTACTGGCA-CAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
15000695 GTAAAATTTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
15000760 ATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCG-CACACCCCCCGGCCCCCCCGAT
391 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACACCCCCCCGACCCCCTGAT
* * ** * * * *
15000824 CGTCGGAAACCTAATGGTGTCGGTTAGGTTCTCCGGAGATGCCCCGACGATGGTTCCCCGACGAA
456 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAA
* * *
15000889 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA-CC-C--T-C-G---G
521 GAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCG
15000945 -TC-----C---G---G---TCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
586 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** ** * * **
15000993 CCACGAAACAAGCGAACGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGC
651 CCACGAAATGAGCGTGCGGGCGCTCAGCCGG-CAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* * * ** * *
15001058 CGGGTCCCCCTCCGTGTGCTGCCGATCCTGTTACCGCAACCCACGGTCCAGTCCGATCTTAGACT
715 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACT
15001123 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGGCGGGCATGCGGGCAC
780 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGC-GG---GCGGGCAC
*
15001187 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
841 TACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
15001247 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
15001312 CCTTAAGCCTTCACGTGAAGTTT-ATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * * * * * * *
15001376 ACTTTTTACGGTGCGGGAATTTTGAAAAATCTTTCAGAAGGAGTTTTGGCCCGAAACTTGGTAGA
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
15001441 TGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
15001506 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
15001571 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA-GTTTGATGAGGGATA-GAGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * * *
15001634 ATATAAGGGCCAAGTGCCAGCACCCATCGGACATCTTGTGCG-CACACCTCGCTCGACCCCCCCG
391 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACACC-CCCCCGA-CCCCCTG
* * ** * *
15001698 ATGGTCGGAACCCCAATGCAGTCGGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGC
454 ATCGTCGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGAC
* * * * * * * **
15001763 AAAGACAAATGTGCCACCAACACATGCCC-ATGCCTAGCATGTGCTGTCGCAACCCTTGGTCCAT
518 GAAGAAAAATGCGACACCAGCACATGCCCGA-GCCCAGCATGTGCTGTCGCAACCCTCGGTCCGG
* * * * *
15001827 TCTGATCTTAGACTGGGAATGAAATC--TATGCTTAGA---AGAATTGAACT--ATATG-GT-AG
582 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAA-TGAACTCCGTATGCCTAAG
* * * ** * *
15001883 TC-A--CA-AAAATGAGCGTGC-GG-GCTCAGCCAGC-CAGGGGC-AAATGC-CAA-CCGTGAAT
646 TCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * *
15001938 CGATTGGGT-CCCTTCT-AG-GCTGGTCGATCCTGCTACCGTAA--C-T--TCTGGT-T--TCTT
711 CGATCGGGTCCCCCTCTGCGTGCT-GCCGATCCTGCTACCGCAACCCTTGGTCCGGTCTGATCTT
* * * * * * * *
15001992 AGA-TAGGAATGGATCATTC-TATG-CTAAGCCAAACCGATG-AA--A-CGGGCGGTGAGAGAGG
775 AGACTGGGAAT-GAAC-TCCGTATGCCTAAGCC-AACCGACGAAACGAGCGGGCGGGGCGGGCGG
* * * *
15002050 G-ACTACGCC-GCCA-AGAGACGGGATTCGCAA--TGTGGATC-ATAGGGTGTTAGTTGGGTTT
837 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
15002108 AGGCACATCTT--TCATTTCT--ATGCCAA-GCCATTTTTATGGCTTGTACATTCACAACAATGG
1 AGGCACATCTTCAT-ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA-TACAATGG
* * * *
15002168 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCTAAGATGA-TTGTTTTCTTTTTTTCACGATTTTC
64 TCCCTTAAGCCTTCACGTGAAGTTTCATGGC-AAGACGACTCGTTTTCTATTTTTCACGATTTTT
*
15002232 AAAACTTTTTACGAGTTTC-ATGAATTTTTT-AAATTTTTTC-GAAGGAGTTTTAGCCCCAAACT
128 AAAACTTTTTACG-G-TTCGA-G-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
15002294 TGGTAGACGTGATCCTTGTATTATTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTG
189 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTG
15002359 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
254 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * * **
15002424 CAAACCTGTAAAATCTCAAAAGCTCTTCAAGGGGGTCTGAGTTCTCGAGGTTTGAAAAGGGATAG
319 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
15002489 GGGGCCAATATAAGGGCCAAATACCAGCACCCAAT-GCACATCATGTGCG-CACACCCCCCCGGC
384 GGGGCCAATATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGACACACCCCCCCGAC
* * * *
15002552 CCCCCGATCGCCGGAACCCAAATGTCGTCGGTCAGGTTCTCC---GA---T-----GATGGTGCC
448 CCCCTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCC
* * * * * *
15002606 CCGATGAAGAGAAATAC-AGCACCAGCCCATACCCGAGCCTAGCATGTGCTGTCGCAACCCTCGG
513 CCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGG
* * * *
15002670 TCTGGTTCGATCTTATACTGGGAATGAACT-TCATATGCTTAGACT-GG---GAA-T--GTATGC
577 TCCGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
15002727 CTAAGTGAACCCACGAAACGACCATGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCC
641 CTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCG-GCAGAGGGGCGGGATGCGCAAGCC
* * * * * ** **
15002792 GGGGATCGATTGGGTCCCCCTCTGTGTCCTGCCGATCCTACTACCACAACCCTCAGTCCTATCTG
705 GGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCCGGTCTG
* * **
15002857 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTACCGACGAAATGAGCAAGCGGGCCGGCG
770 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG--GGCG
* * * *
15002922 GGCGGGCACTACGACGACCAGAGAGACGGGATCCGCAAGCCGTGGATCGATAGGATGGTAGGTGG
832 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
15002987 GTTT
897 GTTT
* * ** *
15002991 AGGAAGATCTTCATATTTCTGTGTGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * *
15003056 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGCCGACTCATATTCTATTTTTCATGATTTTCAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * * *** * *
15003121 ACCTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGAAACAAACTTCGTAGC
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
15003186 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
15003251 TTTTGCGACCATTTGAAAAAAGTGTCCCC-TTTCAGACACTTTAGTGGCTACTGGCAGTAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
15003315 GTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
15003380 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGACCCCCTGA
391 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-ACACACCCCCCCGACCCCCTGA
** *
15003445 TCG-CTGGAACCCCAATGTTGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
455 TCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACG
* * *
15003509 AAGAAAAATACGACACCAGCACATGCCCGAGCCCAGAATGTGCTGTTGCAACCCTCGGTCCGGTC
519 AAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
*
15003574 CGATCTTAGACAGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
584 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
15003639 ACCTATGAAACGAGCGTGCGGGCGCTCAGCTAGGCAGAGGGGCGGGATACGTAAGTCGGGGATCG
649 ACCCACGAAATGAGCGTGCGGGCGCTCAGC-CGGCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * *
15003704 ATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCCGGTCGGATCTTAGA
713 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGA
* * * *
15003769 ATGGGAATGAACTCCTTATGCCTAAGCCAACCTACGAAATGAGCGGGCGGGTAGACGGGCGGGCA
778 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG--G-CGGGCGGGCA
* * * * *
15003834 CTACGCCAGCCAGAGAGACAGGATACGCAATCCATGGATCGATAGGGTGGTAGGTGGGTTT
840 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
** **
15003895 AGGCACATCTTCACCTTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
15003960 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * * *
15004025 ACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCAAAACTTGATATA
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
15004090 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAGCTCGAAGTGTACAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
15004155 TTTTGGGACAATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
15004220 GTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTC-CTGAGGTTTGATTAGGGATAGGGGGCC
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGGGCC
* * * * * *
15004284 AATATAAGGGTCAAGTACCAGCAGCCATTGCAAATCATGTGCG-CACA-CCCCCCAACCCCCCGA
390 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACACCCCCCCGACCCCCTGA
*
15004347 TCGCCGGAACCCCAATGCCGTCGGTCA--------GGT--T-CT-C--C---GGT--------GA
455 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGA
* * * * *
15004387 AGAAAAATGTGGCACCAGCACATGCCCGAGCCCATCTTCACGCGCTGTCGCAA-CC-C--T-C--
520 AGAAAAATGCGACACCAGCACATGCCCGAGCCCA---GCATGTGCTGTCGCAACCCTCGGTCCGG
*
15004445 T--G-TC-----C-----A-G---TCTG-AT-ATTAGACTGGGAATGAACTCCGTATGCCTAAGT
582 TCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * *
15004491 TAACCCACGAAATGAGCGTGCAGGCGCTCAGTCAGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
647 CAACCCACGAAATGAGCGTGCGGGCGCTCAG-CCGGCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * **
15004556 CGATCGGATCCCCCTCTACGTGCTACCGATCCTGTTGCTGTAACCCTTGGTCCTATCTGATCTTA
711 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCCGGTCTGATCTTA
* *
15004621 GACTGGGAATGAACTCCGTATGCATAGGCCAACCGACGAAACGAGCGGGCGGGGGGACGGGCGGG
776 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--GGGG-CGGGCGGG
* *
15004686 CACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
838 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * * *
15004749 AGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTTTGGCTTGTAAATTCATACGACGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
15004814 CCTTAAGCCTTCATGCGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTT--C-------AAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* *
15004870 ACTTTTTGCGGTTC-AGGATTTTTTAAAAATTTTTT-GGAAGGACTTTTGGCCCCAAACTTGGTA
131 ACTTTTTACGGTTCGA-GATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
15004933 GACGTGATCCTTGTACTTTTGTTGGCGTGCATAAAAAAATTAAGCTAAAAACTCGAAGTGTACAA
194 GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
15004998 GATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
259 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
15005063 CTGTAAAA-CTCAAATGCTCTTTATGGGGTTGTGAGTTCTCGAGGTTTGATGAGGGATAGAGGGC
324 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
15005127 CAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCG-CACACCACCCCC-AGGCCCC
389 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACACC-CCCCCGA-CCCCC
* * *
15005190 TCGATCGTCGGAACCCCAATCCCGCCGGTCAGGTTCTCCGGTGATGCTCCAACGATGGTGCCCCG
452 T-GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG
* * * *
15005255 GCAAAGAAAAATGC-AGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
516 ACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCC
* * ** * *
15005319 GGTCTGATCTTAGACTGGGAATGAATTCCATATGCTTAGACTTGGAATGAACACCGTATGCCTAA
580 GGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * *
15005384 GTCAACCCACAAAATGAGCGTGCAGGCCCTAAGCCGGCCAGAGGGGTGGGATGCGCAAGCAGGGG
645 GTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGG-CAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * * * * * **
15005449 ATCGATCGGGCCCCCCCTCTGTGTGCTGCCGATCCTGCTGCTGTAACTCTCGGTCTGGTCCAATC
709 ATCGATCGGG-TCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCCGGTCTGATC
* * * *
15005514 TTAGACTGGGAATGAACTCCGTATACCAAAGCCAACCGATGAAATGA----GC-GGGCGGGCGGG
773 TTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGCGGGCGGG
*
15005574 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTT
838 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * * * *
15005637 AGACACATCTTCATATTTCTACCTGCTAGTGCCATTTTTATGGCTTGTAAATTCAAACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * *
15005702 CTTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAC
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * *
15005767 AGTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG--TT---------C----T---
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * **
15005814 --TGATCCTTGTATTTTTGTTAGCATGCAAAAAAAAATTCATTTAAAAACTCGAAGTGTACAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
15005877 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
15005942 GTAAAATCTAAAATGCTCTTTAAGGGCGTGTGAGTTCTCGAGGTTTGATGAGGCATAAGGGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
15006007 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTACG-CACA-CCCCCCGGCCACCCCGA
391 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACACCCCCCCGACC-CCCTGA
* ** ** * * *
15006070 TCATCGGAACCCCAATATCGTCGGTCAGGTTCTCCGACGATACTCTGGCGATGGTGCCCCGACGA
455 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGA
* * *
15006135 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAA-CC-C--T-C-G---
520 AGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCC
* **
15006191 G---TT----T-GG--T----TC-G-AT-CTTAGATTACGAATGAACTCCGTATGCCTAAGTCAA
585 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** * * * * * * *
15006239 CCTGCAAAACGAGCGTGCGGGTGCTCAGCTGGCCGGATGGGTGGGATGCAG-AA-CCGGGGATCG
650 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGG-CAGAGGGGCGGGATGC-GCAAGCCGGGGATCG
* * *
15006302 GTCGGGTCCCCCTCTGC---CT---G---CTG-T--CGCAACCCTCGGTCCAGTGCT-ATCTTAG
713 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCCGGT-CTGATCTTAG
* * * *
15006354 AATGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGTGGACAGGCAGGAGGGC
777 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGG---GGCGGGCGGGC
* *
15006419 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATGGA-AGGGTGGTAGGTGGGTTT
839 ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
15006480 AGGCACATCTTCATATTTCTACGTGCCAATGCCA-TTTTAGAGGCTTGTAAATTCATACAATGGT
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTA-TGGCTTGTAAATTCATACAATGGT
* * * *
15006544 CCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACAATTTTTGA
65 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT-A
15006609 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
129 AAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
15006674 GACGTGATCCTTGTATTTTTTTTGGTAGGCATAAAGAAATTCAGCTAAAAACTCGAAGTATACAA
194 GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
15006739 GATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAAAC
259 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
15006804 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGC
324 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
15006869 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG-CACACCCTCCCCCGGCCCCC
389 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACA-CC-CCCCC-GACCCC
* * * ** * *
15006933 CTGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTTCGGCAATGCTTCGACGATGGTGACCCG
451 CTGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCG
* * *
15006998 ACGAAGAAAAATTCAGA-ACCGGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCA
516 ACGAAGAAAAATGC-GACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCC
* * ** *
15007062 AGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAA
580 GGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
15007127 GTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGCAGGATGCGCACGCCAGGG
645 GTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGG-CAGAGGGGCGGGATGCGCAAGCCGGGG
* * * ** ** * *
15007192 ATCGGTCGGGT-CCCCTCTGCGTGTTGCCAATCCTATTATTGCAACCCTCGGTCTGGTC-GAATC
709 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCCGGTCTG-ATC
*
15007255 TT-GCACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GGGCGGGC-G
773 TTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGCGGGCGG
* * ** * *
15007317 GCACTACGCCGGCAAGAGATA-TAGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGATT
837 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
15007380 AGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAAATTCATACATTGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
15007445 CCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
*
15007510 ACTTCTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
15007575 CATGATCCTTGTGTTTTTGTTGTCATGCATATAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
15007640 -TTT-TGACCATTTGAAAAAAGTGT-TCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
15007702 GTAAATTCTCAAATGCTCTTTAAAGGGGTGCT-AGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
15007766 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCG-CACACCTCCCCGGCCCCCTGA
390 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACACCCCCCCGACCCCCTGA
* * **
15007830 TCGTCGGAACCCCATTGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGGTGA
455 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGA
* * * * * *
15007895 AGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATTTGCTATTGCAA--CAC--T-C-G---
520 AGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCC
*
15007951 G----T---CT--G-AT---C-C-G-AT-CTTAGACTGGGAATTAACTCCGTATGCCTAAGTCAA
585 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * ** *
15007999 CCCATGAAATGACCGTGCGGGCGCTCAGCCGACTAG-GTTCGCGTGATGCGCAAGCCGGGGATCG
650 CCCACGAAATGAGCGTGCGGGCGCTCAGCCGGC-AGAG-GGGCGGGATGCGCAAGCCGGGGATCG
** * * * * * *
15008063 GCCAGGTCCCCCTCTGCGTGCTGCTGATCCTACTTCCACAA-CCTTCAGTCCGGTCTGATCTTAG
713 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTT-GGTCCGGTCTGATCTTAG
* *
15008127 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA----AC-GGGCGGGCGGGCACT
777 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGCGGGCGGGCACT
* * * *
15008187 ACACCGACCAGAGAGACGGGATGTGCAAACCGTGGATCGATAGGGTGGTAGGTGGGTTT
842 ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* ** * * * *
15008246 AGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTGTGGCTTGTAATTTCATGCAACGGT-
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
15008310 CCTGTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCATGATTTTTGA
66 CCT-TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAA
*
15008375 AACTTTTTACGGTTCCG-GATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
130 AACTTTTTACGGTT-CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
15008439 GACGTGATACTTGTATTTTTGTTGACATGAACAAAAAATTTCAGCTAAAAACTCGAAGTGTACAA
194 GACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
15008504 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGCCAGCAAAC
259 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
15008569 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
324 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
15008634 CAATATAAGGGCCAAGTACCA-CACCCATTGCACATCATGTG-GGCATACCCCCCGGACCCCC-G
389 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACACCCCCCCGACCCCCTG
* * * ***
15008696 ATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCCGGTA
454 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACG
* ** * * * * * * *
15008761 AAGAAAAATACGATGCCAGCACATGCTCGAGCGCAGCATGTGTTGCCACAACCCTCGATCCGATC
519 AAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
* ** * *
15008826 TGATCTTAGGTTGGGAATGAACTCGGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAGGTCA
584 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
15008891 ACGCACGAAACGAGCGTGCGGGCGCT-AACCGGCAAGAGGGGCGGGATGCGCAAGCTGAGGATCG
649 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGC-AGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * ** *
15008955 ACCGGGTCCCCTTCTGCGTGCTGCCGATCCTACTGCCGCAA-CCTTCTATCAGGT-TCGATCTTA
713 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTT-GGTCCGGTCT-GATCTTA
* * * * * *
15009018 GACTGGGAATGAACTCCGTATGCCTAAGCCTATCAATGAAACGAGCGGACGGGTAGGCGGGTGGG
776 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG--GGCGGGCGGG
* * * * ** *
15009083 CACTACGCCAGCCAAAGAGACGGGATGCTCAAGTCACGGATCGATAGGATGGTAGGTGGGTTT
838 CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * ** *
15009146 AGGCACATCTTCATATTTTTGCATGCCAATGCCAATTTCATGGCTTGTAAATTGGTAAAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * * *
15009211 CCTTAAGCCTACATGTGAAGTTTCATGGCTAGATGACTCGTTTTCTATTTTTCATGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
* * * * ** * * *
15009276 ACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAAGG-GTTTTTCACCCCCAACCTGGTAC
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGCCCCAAACTTGGTAG
** * * *
15009340 AAATTATCCTTGCATTTTTATTGGCATGCAT-AAAAAATTCAGCT-AAAACTCGAAGTGTACAAG
195 ACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
15009403 A-TTTGTGACCATTTG-AAAAAGTGT-CCCATTTCAGAC-CTTTAATGGCAACTGGCAGCAAACC
260 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
15009464 TGTAAAATCTC-AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
325 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
15009528 -ATATAAGGGCCAAGTACCAGCACCCATCGC-CATCATGTGTG-CACACCCCCCTC-AGCTCCCT
390 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACACCCCCC-CGA-CCCCCT
* *
15009589 CGATCATCAGAACCCCAATGCCGTCGGTCAAGGTTCT
453 -GATCGTCGGAACCCCAATGCCGTCGGTC-AGGTTCT
15009626 TCGATCTGAT
Statistics
Matches: 7917, Mismatches: 950, Indels: 760
0.82 0.10 0.08
Matches are distributed among these distances:
836 58 0.01
837 1 0.00
838 1 0.00
839 3 0.00
840 1 0.00
841 1 0.00
842 6 0.00
843 126 0.02
844 183 0.02
845 179 0.02
846 20 0.00
847 31 0.00
848 95 0.01
849 18 0.00
850 84 0.01
851 3 0.00
852 4 0.00
853 12 0.00
854 361 0.05
855 15 0.00
856 10 0.00
857 31 0.00
858 45 0.01
859 61 0.01
860 291 0.04
861 82 0.01
862 192 0.02
863 4 0.00
864 252 0.03
865 27 0.00
866 280 0.04
867 308 0.04
868 142 0.02
869 135 0.02
870 116 0.01
871 183 0.02
872 34 0.00
873 19 0.00
874 127 0.02
875 87 0.01
876 184 0.02
877 252 0.03
878 105 0.01
879 9 0.00
880 30 0.00
881 4 0.00
882 27 0.00
883 42 0.01
884 226 0.03
885 244 0.03
886 297 0.04
887 36 0.00
888 175 0.02
889 29 0.00
890 170 0.02
891 14 0.00
892 170 0.02
893 312 0.04
894 62 0.01
895 135 0.02
896 254 0.03
897 168 0.02
898 33 0.00
899 162 0.02
900 391 0.05
901 25 0.00
902 40 0.01
903 9 0.00
904 487 0.06
905 197 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (900 bp):
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAA
ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGACACACCCCCCCGACCCCCTGAT
CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAA
GAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCG
ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
CCACGAAATGAGCGTGCGGGCGCTCAGCCGGCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTTGGTCCGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGGCGGGCGGGCACTACGC
CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
Found at i:15005378 original size:26 final size:26
Alignment explanation
Indices: 15005327--15005379 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15005317 CCGGTCTGAT
**
15005327 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
15005353 CTTAGACTTGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
15005379 C
1 C
15005380 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:15007108 original size:26 final size:26
Alignment explanation
Indices: 15007070--15007122 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15007060 CAAGTTCGAT
*
15007070 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
15007096 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15007122 C
1 C
15007123 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15007953 original size:893 final size:887
Alignment explanation
Indices: 15004459--15009625 Score: 6043
Period size: 900 Copynumber: 5.9 Consensus size: 887
15004449 CAGTCTGATA
* * *
15004459 TTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCAGGCGCTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * *
15004524 AGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATCGGATCCCCCTCTACGTGCTACCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCTCTGCGTGCTGCCGATCCT
* * * * * * *
15004589 GTTGCTGTAACCCTTGGTCCT-ATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAGGCCAA
130 ATTGCCGCAACCCTCGGT-CTGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
*
15004653 CCGACGAAACGAGCGGGCGGGGGGACGGGCGGGCACTACGTCGGCCAA-AGAGACGGGATGCGCA
193 CCGACGAAACGAGCGGGC---GGG-C-GG-GGGCACTACGCCGG-CAAGAGAGACGGGATGCGCA
*
15004717 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTTGCCAATGCC
251 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCC
* * * * * *
15004782 ATTTTTTTGGCTTGTAAATTCATACGACGGTCCCTTAAGCCTTCATGCGAAGTTTCATGGCGAGA
316 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
*
15004847 CGACTCGTTTTCTATTTTTC---------AAAACTTTTTGCGGTTC-AGGATTTTTTAAAAATTT
381 CGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGA-GATTTTTT-AAAATTT
* * *
15004902 TTT-GGAAGGACTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCGTGCATA
444 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAT-
* *
15004966 AAAAAATTAAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCAT
508 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
15005031 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA-CTCAAATGCTCTTTATGGGGTTGT
573 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* *
15005095 GAGTTCTCGAGGTTTGATGAGGGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCA
638 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*
15005160 CATCATGTGCGCACACCACCCCCAGG-CCCCTCGATCGTCGGAACCCCAATCCCGCCGGTCAGGT
703 CATCATGTGCGCACA-C-CCCCC-GGCCCCCT-GATCGTCGGAACCCCAATGCCGCCGGTCAGGT
** * * *
15005224 TCTCCGGTGATGCTCCAACGATGGTGCCCCGGCAAAGAAAAATGCAGCACCAGCACATGCCTGAG
764 TCTCCGGTGATGCTCTGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAG
15005289 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAATTCCATATGC
829 CCCAGCATGTGCTGCCGCAACCCTCGGT-C-GTC-GATCTTAG-CTGGGAATGAA-TCC-TATGC
* * * * * *
15005354 TTAGACTTGGAATGAACACCGTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCCCTAAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * *
15005419 GGCCAGAGGGGTGGGATGCGCAAGCAGGGGATCGATCGGGCCCCCCCTCTGTGTGCTGCCGATCC
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGG--TCCCCTCTGCGTGCTGCCGATCC
** * * * * * *
15005484 TGCTGCTGTAACTCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATACCAAAGCCAA
129 TATTGCCGCAACCCTCGGTCTGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * *
15005549 CCGATGAAATGAGCGGGCGGGC--GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCATG
193 CCGACGAAACGAGCGGGCGGGCGGGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCGTG
* * * *
15005612 GATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTACCTGCTAGTGCCATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
* * *
15005677 TGGCTTGTAAATTCAAACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * * * *
15005742 TTTTCTATTTTTCATGATTTTTGACAGTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAG
388 TTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* *
15005807 GAG--TT---------C----T-----TGATCCTTGTATTTTTGTTAGCATGCAAAAAAAAATTC
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-ATAAAAAATTC
**
15005852 ATTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
517 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* *
15005917 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGCGTGTGAGTTCTCG
582 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG
* * * *
15005982 AGGTTTGATGAGGCATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTA
647 AGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG
* * ** * ** *
15006047 CGCACACCCCCCGGCCACCCCGATCATCGGAACCCCAATATCGTCGGTCAGGTTCTCCGACGATA
712 CGCACACCCCCCGGCC-CCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATG
* *
15006112 CTCTGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
776 CTCTGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGC
* *
15006177 TGCCACAA-CC-C--TCG--G---TT---T-GG--T---T-CGAT-C
841 TGCCGCAACCCTCGGTCGTCGATCTTAGCTGGGAATGAATCCTATGC
* ** ** * * * *
15006204 TTAGATTACGAATGAACTCCGTATGCCTAAGTCAACCTGCAAAACGAGCGTGCGGGTGCTCAGCT
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * *
15006269 GGCCGGATGGGTGGGATGCAG-AA-CCGGGGATCGGTCGGGT-CCC-C--C-T-CTGCC--TGC-
66 GGCCAGAGGGGCGGGATGC-GCAAGCCGGGGATCGATCGGGTCCCCTCTGCGTGCTGCCGATCCT
* ** * *
15006323 --TGTCGCAACCCTCGGTCCAGTGCTATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAAC
130 ATTGCCGCAACCCTCGGTCTGGT-CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * *
15006386 CGACGAAACGAGCGGGTGGACAGGCAGGAGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAG
194 CGACGAAACGAGC--G-GG-CGGGC-GG-GGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAG
* *
15006451 CCGTGGATGGA-AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA-
253 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCAT
* *
15006514 TTTTAGAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGAC
318 TTTTA-TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * **
15006579 GACTCATTTTTTATTTTTCACAATTTTTGAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
382 GACTCGTTTTCTATTTTTCATGATTTTT-AAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTT
* * *
15006644 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGTAGGCATAAA
446 TCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAA
* *
15006709 GAAATTCAGCTAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAACTGTCCCCATTT
511 -AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
15006774 CAGGCACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
575 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
15006839 GTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
640 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
*
15006904 TCATGTGCGCACACCCTCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCCGCCGATCAGGTTC
705 TCATGTGCGCACA--C-CCCCCGG-CCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTC
* ** * * * * * *
15006969 TTCGGCAATGCT-TCGACGATGGTGACCCGACGAAGAAAAATTCAGAACCGGCACATGCCCGAGC
766 TCCGGTGATGCTCT-GACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGC
*
15007033 CCAGCATGTGCTGTCGCAACCCTCGGTCAAGTTCGATCTTAGACTGGGAATGAACTCCATATGC
830 CCAGCATGTGCTGCCGCAACCCTCGGTC--G-TCGATCTTAG-CTGGGAATGAA-TCC-TATGC
* *
15007097 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * * * * *
15007162 GGCCAAAGGGGCAGGATGCGCACGCCAGGGATCGGTCGGGTCCCCTCTGCGTGTTGCCAATCCTA
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTCTGCGTGCTGCCGATCCTA
*** *
15007227 TTATTGCAACCCTCGGTCTGGTCGAATCTT-GCACTGGAAATGAACTCCGTATGCCTAAGCCAAC
131 TTGCCGCAACCCTCGGTCTGGTCG-ATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* ** *
15007291 CGACGAAACGAGCGGGCGGGCGGGCGGCACTACGCCGGCAAGAGATA-TAGATGCGCAAGCTGTG
194 CGACGAAACGAGCGGGCGGGCGGG-GGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCGTG
* * *
15007355 GATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTA
258 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
* *
15007420 TGGCTTGTAAATTCATACATTGGTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCG
323 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* * *
15007485 TTTTCTATTTTTCACGATTTTCAAAACTTCTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
388 TTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAG
* * *
15007550 GAGTTTTGGCCCCAAACTTGGTAGACATGATCCTTGTGTTTTTGTTGTCATGCATATAAAAATTC
453 GAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATA-AAAAATTC
* *
15007615 AGCTAAAAACTTGAAGTGTACAAGA-TTT-TGACCATTTGAAAAAAGTGT-TCCATTTCAGACAC
517 AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACAC
* * *
15007677 TTTAATGGCTACTGGCAGCAAACTTGTAAATTCTCAAATGCTCTTTAAAGGGGTGCT-AGTTCTC
582 TTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTC
*
15007741 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
646 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* *
15007806 GCGCACACCTCCCCGGCCCCCTGATCGTCGGAACCCCATTGCCGTCGGTCAGGTTCTCCGGTGAT
711 GCGCACACC-CCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGAT
* * *
15007871 GCTCTGACGATGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATTTG
775 GCTCTGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
*** *
15007936 CTATTGCAACACTCGGTC-T-GATC----C-------G------AT-C
840 CTGCCGCAACCCTCGGTCGTCGATCTTAGCTGGGAATGAATCCTATGC
* * *
15007964 TTAGACTGGGAATTAACTCCGTATGCCTAAGTCAACCCATGAAATGACCGTGCGGGCGCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * ** * ** * *
15008029 GACTAG-GTTCGCGTGATGCGCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGCTGATCC
66 GGCCAGAG-GGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCTCTGCGTGCTGCCGATCC
* * * *
15008093 TACTT-CCACAACCTTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
129 TA-TTGCCGCAACCCTCGGTCTGGTC-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
15008157 ACCGACGAAATGAACGGGCGGGC--GGGCACTACACCGACCAGAGAGACGGGATGTGCAAACCGT
192 ACCGACGAAACGAGCGGGCGGGCGGGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCGT
* ***
15008220 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTT
257 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTT
* * * * *
15008285 GTGGCTTGTAATTTCATGCAACGGT-CCTGTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACT
322 ATGGCTTGTAAATTCATACAATGGTCCCT-TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT
* *
15008349 CGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCCG-GATTTTTTTAAATTTTTTCGG
386 CGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTT-CGAGATTTTTTAAAATTTTTTCGG
* * * *
15008413 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATACTTGTATTTTTGTTGACATGAACAAAAAAT
450 AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAA-
15008478 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
514 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
*
15008543 CACTTTAATGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
579 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
15008608 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-CACCCATTGCACATCAT
644 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* * * *
15008672 GTGGGCATACCCCCCGGACCCCC-GATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGATG
709 GTGCGCACACCCCCCGG-CCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTG
* ** * *** * *
15008736 ATGCTCCGACGATGGTGCCCCGGTAAAGAAAAATACGATGCCAGCACATGCTCGAGCGCAGCATG
773 ATGCTCTGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATG
* * * * *
15008801 TGTTGCCACAACCCTCGATCCGATCTGATCTTAGGTTGGGAATGAACTCGGTATGC
838 TGCTGCCGCAACCCTCGGT-CG-TC-GATCTTA-GCTGGGAATGAA-TC-CTATGC
* * * *
15008857 TTAGACTGGGAATGAACTCCGTATGCCTAGGTCAACGCACGAAACGAGCGTGCGGGCGCT-AACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
* * * *
15008921 GGCAAGAGGGGCGGGATGCGCAAGCTGAGGATCGACCGGGTCCCCTTCTGCGTGCTGCCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC-TCTGCGTGCTGCCGATCCT
* * ** * * *
15008986 ACTGCCGCAACCTTCTATCAGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTAT
130 ATTGCCGCAACCCTCGGTCTGG-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * * * *
15009051 CAATGAAACGAGCGGACGGGTAGGCGGGTGGGCACTACGCCAGCCAA-AGAGACGGGATGCTCAA
194 CGACGAAACGAGCGG--GCG--GGC-GG-GGGCACTACGCC-GGCAAGAGAGACGGGATGCGCAA
* ** * * *
15009115 GTCACGGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCA
252 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* * ** * * * * *
15009180 ATTTCATGGCTTGTAAATTGGTAAAATGGTCCCTTAAGCCTACATGTGAAGTTTCATGGCTAGAT
317 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
15009245 GACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTT
382 GACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
* ** * * * ** * * *
15009310 TGGAAGG-GTTTTTCACCCCCAACCTGGTACAAATTATCCTTGCATTTTTATTGGCATGCATAAA
447 CGGAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAA
15009374 AAATTCAGCT-AAAACTCGAAGTGTACAAGA-TTTGTGACCATTTG-AAAAAGTGT-CCCATTTC
511 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
15009435 AGAC-CTTTAATGGCAACTGGCAGCAAACCTGTAAAATCTC-AATGCTCTTTAAGGGGGTGTGAG
576 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
15009498 TTCTCGAGGTTTGATGAGGGATAGGGGGCC-ATATAAGGGCCAAGTACCAGCACCCATCGC-CAT
641 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
15009561 CATGTGTGCACACCCCCCTCAGCTCCCTCGATCATCAGAACCCCAATGCCGTCGGTCAAGGTTCT
706 CATGTGCGCACA-CCCCC-CGGCCCCCT-GATCGTCGGAACCCCAATGCCGCCGGTC-AGGTTCT
15009626 TCGATCTGAT
Statistics
Matches: 3678, Mismatches: 427, Indels: 333
0.83 0.10 0.08
Matches are distributed among these distances:
836 63 0.02
838 1 0.00
839 4 0.00
840 4 0.00
841 5 0.00
842 6 0.00
843 126 0.03
844 85 0.02
845 1 0.00
846 5 0.00
849 14 0.00
850 73 0.02
851 3 0.00
852 1 0.00
853 1 0.00
855 1 0.00
857 1 0.00
859 3 0.00
860 1 0.00
863 4 0.00
864 219 0.06
865 26 0.01
866 264 0.07
867 313 0.09
868 147 0.04
869 121 0.03
870 2 0.00
871 3 0.00
872 5 0.00
873 1 0.00
874 1 0.00
875 4 0.00
876 110 0.03
877 128 0.03
878 95 0.03
879 2 0.00
882 1 0.00
883 2 0.00
884 3 0.00
886 2 0.00
887 2 0.00
888 169 0.05
889 1 0.00
890 1 0.00
891 6 0.00
892 153 0.04
893 319 0.09
894 62 0.02
895 136 0.04
896 257 0.07
897 63 0.02
898 25 0.01
899 152 0.04
900 394 0.11
901 15 0.00
902 4 0.00
903 1 0.00
904 2 0.00
905 65 0.02
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (887 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCTCTGCGTGCTGCCGATCCTA
TTGCCGCAACCCTCGGTCTGGTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCG
ACGAAACGAGCGGGCGGGCGGGGGCACTACGCCGGCAAGAGAGACGGGATGCGCAAGCCGTGGAT
CGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGG
CTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTT
TCTATTTTTCATGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG
TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAATTCAGCT
AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGT
TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA
CACCCCCCGGCCCCCTGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCTG
ACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
CAACCCTCGGTCGTCGATCTTAGCTGGGAATGAATCCTATGC
Found at i:15011845 original size:894 final size:891
Alignment explanation
Indices: 15010347--15014615 Score: 4783
Period size: 894 Copynumber: 4.8 Consensus size: 891
15010337 TCGGTCTGAT
* ** * * * *
15010347 CTTAGACTGGGAATGAACTCCGTATGCCTATGTCAAATCACGAAACGAGCGTGTGGACGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * * * * * *
15010412 CAGCCAG-AGGGCGGGATTCGTAAGCCGGGGATCGATCGAGTCCCCCTCTGCATGCTGCCGATCC
66 C-GGCAGAAGGGCGAGATGCGCAAGCCGGGGATCGAT-GGGT-CCCCTCTGCACGCTACCGATCC
** ** ** * *
15010476 TGTTACCCCCAACCCTTTGTCCGGT-TCGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCC
128 TACTA--CGGAACCCTCAGTCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
15010540 AACCGACGAAAGGTACGGACGGGCTGGGCGAGC-AGGCGGGCACTATGC-CGACTAGAAAGACGG
190 AACCGACGAAACG-A--G-CGGGC--GGCG-GCGA-GCGGGCAC--TGCTCGGCCAGAGAGACGG
* * * * *
15010603 GATGCCGCAAGTCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTGCAT
245 CATG-CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACAT
* * * * *
15010668 GCCAATACCATTTTTATGGCTTGTCAATTCATACAATGGTTCCTTAAGGCTTCATGTGAAGTTTC
309 GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-TCCCTAAGCCTTCACGTGAAGTTTC
* *
15010733 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTT
373 ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGA-GATTTTT
* *
15010797 TAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
437 TAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGG
* ** *
15010862 CATGCAGAAAAAAATTCAATTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGT
502 CATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGT
* *
15010927 GTCCCCATTT-AGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAA
567 GTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA
* * *
15010991 GGGGGTGTGAGTTCTCAATGTTTGATGAGGGATTGGGGGCCAATATAAGGGCCAGGTACCAGCAC
632 GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA-TGGGGGCCAATATAAGGGCCAAGTACCAGCAC
* * *
15011056 CCATCGCACATCATGTGTGCACACCCCCCTCGGCTCCCTCGATCGTCGGAACCCCAATGCCACTT
696 CCATCGCACATCATGTGCGCACA-CCCCC-CGGC-CCC-CGATCGTCAGAACCCCAATGCCACTC
* **
15011121 G-TCAGGTTCTTCGGCGATGCTCCGACGATGGTGCTCCGACGAAGAAAAATGTGGCACCAGCACA
757 GATCAGGTTC-TCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACA
* * *
15011185 TGCTCGAGCCCAGCATGTGCTGCAACAACCCTCGGTCCGATC-GATATTAGACTGAGAATGAACT
821 TGCCCGAGCCCAGCATGTGCTGC-GCAACCCTCGGTCCGATCTGATCTTAGACTGAGAATGAACT
15011249 CCGTAT-
885 CCGTATG
* * * * *
15011255 C-TAGAC-GGGAATGAACTCCGTATGTCC-AAGTTAA-CCACGAAATGAGCGTACGGGCGCTCAA
1 CTTAGACTGGGAATGAACTCCGTATG-CCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAG
* * *
15011316 TC-GCTAG-AGAGTCGAGATTCGC-AG-CGGGGATCCG-TGGGTCCCCTCTGCACGCTACC-ATC
65 CCGGC-AGAAG-GGCGAGATGCGCAAGCCGGGGAT-CGATGGGTCCCCTCTGCACGCTACCGATC
* *
15011375 CTACTACGTGAACCACTCGATTC-GGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAG-
127 CTACTACG-GAACC-CTC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
*
15011438 CATCCGACGAAACGAGCGGGCGGACAGGCGAGCGGGCACTGGCATCGGCCAGAGAGACGGCATGC
189 CAACCGACGAAACGAGCGGGCGG-C-GGCGAGCGGGCACT-GC-TCGGCCAGAGAGACGGCATGC
* *
15011503 GTAAGCCGTGGATCGATAGGGTGGTAGGCGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
250 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* *
15011568 GCCATTTTTTATGGCTTGAAAATTCATACAATGGTCCCTAAGCCTTCCGCGTGAAGTTTCATGGC
315 GCCA-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTAAGCCTT-CACGTGAAGTTTCATGGC
* * *
15011633 AAGACGACTCGTTTTCTATTTTTCACAATTTTTCAAAACTTTTTGCGGTTCGAGATTTTTGAAAA
378 AAGACGACTCGTTTTCTATTTTTCACGATTTTT-AAAACTTTTTACGGTTCGAGATTTTTTAAAA
* * * *
15011698 TTTTTTCAGAAGGAGTTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGAAAGC
442 TTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC
15011762 ACAAAAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCC
507 ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCC
* * *
15011825 CATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTGAAATGCTCTTTACGGGGG
572 CATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
*
15011890 TGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
637 TGTGAGTTCTCGAGGTTTGATGAGGGAT-GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* *
15011955 GCACATCATGTGCGCACA-CCCCCGGCCCCCGATCGTCAGAACCCCAATGCCGC-CGCTCAGGTT
701 GCACATCATGTGCGCACACCCCCCGGCCCCCGATCGTCAGAACCCCAATGCCACTCGATCAGGTT
* * ** *
15012018 CTCCGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTGGCACGAGCACATGCCCGAGCC
766 CTCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCC
* * * * *
15012083 CAGCATGTGCTGTCGTAACCCTTGGTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATG
831 CAGCATGTGCTG-CGCAACCCTCGGTCCGATCTGATCTTAGACTGAGAATGAACTCCGTATG
* *
15012145 CTTAGACTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * ** * * * *
15012210 CGGCCAGAAGGGCGGGATACATAAGCCGGGGATCGACCGGGTCCCTCTGTGTACTG-T--TGATC
66 CGG-CAGAAGGGCGAGATGCGCAAGCCGGGGATCGA-TGGGTCCC-CTCTGCAC-GCTACCGATC
** *
15012272 C-AGCTATCACAA-CCTC-GATCTGGTCTGATGTTAGACCTGGGAATGAACAT-CGTAT-CC-AA
127 CTA-CTA-CGGAACCCTCAG-TCTGGTCTGATCTTAGA-CTGGGAATGAAC-TCCGTATGCCTAA
* * * * ** *
15012331 GCCAACAGACGAAACGAGC-GGCGAC--CGGGCGGGCA-TAC-CTGGAGAGAGAGACAGG-ATGT
187 GCCAACCGACGAAACGAGCGGGCGGCGGCGAGCGGGCACTGCTC-GGCCAGAGAGAC-GGCATGC
* *
15012390 GCAAGCCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAAT
250 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAAT
* *
15012455 GCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTGAGCCTTCACGTGAAG-TTCATGGCA
315 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TAAGCCTTCACGTGAAGTTTCATGGCA
* *
15012519 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTAACGGTTCGGGATTTTTTAAAATT
379 AGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAA-T
* * * *
15012584 TTTTTC-GAAGGAG-TTT-ACCCCAAACAT-GTAGACGTGATCCTTGTATTTTTTTTTGGCCTGC
443 TTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGC
* * * *
15012645 ACAAAAAAATTCAAACTAAAAACTCAAAGTGTATAAGATTTTGTGACCATTTG--GAAAGTGTCC
507 ACAAAAAAATTC-AGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCC
* *
15012708 CCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAATATCTCAAATGCTCTTTAA-GGG
571 CCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGG
* * * * *
15012772 GTATGAGATCTCGAGGTTTGATGAGGGAAAGGGGGTCAATATAAGGGCCAAGTTCCAGCACCCAT
636 GTGTGAGTTCTCGAGGTTTGATGAGGG-ATGGGGGCCAATATAAGGGCCAAGTACCAGCACCCAT
*
15012837 CGCACATCATGTGCGCACACCCCCCGGCCCCCGATCGTC-GAAACCCCAATGCC-GTCGATCAGG
700 CGCACATCATGTGCGCACACCCCCCGGCCCCCGATCGTCAG-AACCCCAATGCCACTCGATCAGG
*
15012900 TTCTC--C---G----G-CGATGGTGCCCCGGA-GAAGAAAAATACGACACCAGCACATGCCCGA
764 TTCTCGGCGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATACGGCACCAGCACATGCCCGA
* * * * * * *
15012954 GCCCAGCATGTGCTACCGCAACACTCGAT-CTAGTCCGATCCTAG-CTTAGGAATGAACTCCGTA
828 GCCCAGCATGTGCT-GCGCAACCCTCGGTCCGA-TCTGATCTTAGACTGA-GAATGAACTCCGTA
15013017 TG
890 TG
** * * * *
15013019 CTTAGACTGGGAACAAACTCTGTGTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
* * **
15013084 CGACGAGAGGGGC-AGGATGCGCAAGCCGGGGATC-AGTCGGGTCCCCCTCTGCGTGCTACCGAT
66 CGGC-AGAAGGGCGA-GATGCGCAAGCCGGGGATCGA-T-GGGT-CCCCTCTGCACGCTACCGAT
* * * *
15013147 CCTGCTGCCCGCAACCCTCAGTCTGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGC
126 CCTACT--ACGGAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * * * * * * *
15013212 CAACCGACGAAACGGGCGGG-TG-GGCGTGC--ACTA-TG-TCGACTAGAGAGACGGGATGCACA
189 CAACCGACGAAACGAGCGGGCGGCGGCGAGCGGGC-ACTGCTCGGCCAGAGAGACGGCATGCGCA
** * * *
15013271 AGCCCGT-GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTTTTATTTTTTCATGCCAATCC
253 AG-CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGC
* **
15013335 CATTTTTATGGCTTGTAAATTCATACAATGGTCCTTAAGCCTTCGTGTGAAGTTTCAT-GC-AGA
317 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
15013398 CGACTCATTTT-TATTTTTCACGATTTTTGAAAACTTTTTACGGTT-TAGGATTTTTTAAACTTT
382 CGACTCGTTTTCTATTTTTCACGATTTTT-AAAACTTTTTACGGTTCGA-GATTTTTTAAAATTT
* * * *
15013461 TTTCGGAAGGATTTTTGGCCCCAAACTTAGTATACATGATCCTTGTA-TTTTGTTGGCATGCAC-
445 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
15013524 AAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCCATTTGAAAAAAGTGTCCCCA
510 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA-CCATTTGAAAAAAGTGTCCCCA
* * *
15013589 TTTCAGACACTTTAATGGCCACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTG
574 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
15013654 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCGATTGCA
639 TGAGTTCTCGAGGTTTGATGAGGGATGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
15013719 CATCATGTGCGCACACCCCCCGGCCCCCCATTCGCCAGAACCCCAATG-CAGC-CGGTCAGGTTC
704 CATCATGTGCGCACACCCCCCGGCCCCCGA-TCGTCAGAACCCCAATGCCA-CTCGATCAGGTTC
* * * *
15013782 TCCGGCAATGCTCCGACGATGGTG-CTCGACGAAGAAAAATACGGCACCAGCACATGCCTGAAAC
767 T-CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCG-AGC
* * *
15013846 CCAGGATGTGTTGCTGCAACCCTCGGTCCGGTCTGATCTTAGACTGTTGGATGAACTCGTCATGC
830 CCAGCATGTGCTGC-GCAACCCTCGGTCCGATCTGATCTTAGAC---T-GA-G-A------ATG-
15013911 TTAGACTGGGAATGAACTCGTATG
881 --A-AC------T---C-CGTATG
* * * *
15013935 CTTAGACTAGGAATG-ACTCCGTATGCCTTAAGTCGACCC-CGAAACGAACGGTGTGGGTGCTCA
1 CTTAGACTGGGAATGAACTCCGTATGCC-TAAGTCAACCCACGAAACGAAC-GTGCGGGCGCTCA
* * *
15013998 GTCGGGCAGAAGGGCGAGATGCGCAAGCC-GGGATCGACTGGGTCCCCTCTGCATGCTGCCGATC
64 G-CCGGCAGAAGGGCGAGATGCGCAAGCCGGGGATCGA-TGGGTCCCCTCTGCACGCTACCGATC
* * * *
15014062 CTACTATCGCAACCCTCAGTCTGGTCCGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCGA
127 CTACTA-CGGAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
** * * *
15014127 ACCGACGAAATAAGCGGGC-G-GGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGC-TGCGCAA
191 ACCGACGAAACGAGCGGGCGGCGGCGAGCGGGCACTGC-TCGGCCAGAGAGAC-GGCATGCGCAA
** *
15014189 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGGTCATCTTCATATTTCTGCATGCCAATGCCA
254 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
* *
15014254 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGAT
319 TTTTTATGGCTTGTAAATTCATACAATGGTCCC-TAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * * *
15014319 GACTCATTTTCTATTTCTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTT
383 GACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTT
15014384 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
448 CGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
15014449 CAATTCAG-TGAAAAACTAGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
513 AAATTCAGCT-AAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* **
15014513 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCAA
577 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
15014578 GTTCTCGAGGTTTGATGAGGGATAGGGGCCAATATAAG
642 GTTCTCGAGGTTTGATGAGGGATGGGGGCCAATATAAG
15014616 TGTGCATACC
Statistics
Matches: 2881, Mismatches: 319, Indels: 309
0.82 0.09 0.09
Matches are distributed among these distances:
873 6 0.00
874 177 0.06
875 59 0.02
876 69 0.02
877 55 0.02
878 267 0.09
879 95 0.03
880 8 0.00
882 19 0.01
883 115 0.04
884 146 0.05
885 81 0.03
886 40 0.01
887 85 0.03
888 91 0.03
889 89 0.03
890 52 0.02
891 13 0.00
892 28 0.01
893 48 0.02
894 269 0.09
895 191 0.07
896 73 0.03
897 18 0.01
898 10 0.00
899 17 0.01
900 47 0.02
901 18 0.01
902 6 0.00
903 9 0.00
904 8 0.00
905 33 0.01
906 25 0.01
907 7 0.00
908 1 0.00
912 1 0.00
913 76 0.03
914 24 0.01
915 31 0.01
916 65 0.02
917 106 0.04
918 22 0.01
919 2 0.00
920 85 0.03
921 156 0.05
922 38 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (891 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGC
CGGCAGAAGGGCGAGATGCGCAAGCCGGGGATCGATGGGTCCCCTCTGCACGCTACCGATCCTAC
TACGGAACCCTCAGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
CGAAACGAGCGGGCGGCGGCGAGCGGGCACTGCTCGGCCAGAGAGACGGCATGCGCAAGCCGTGG
ATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTAT
GGCTTGTAAATTCATACAATGGTCCCTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTT
TTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGA
GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAG
CTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTT
TAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAG
GTTTGATGAGGGATGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
ACACCCCCCGGCCCCCGATCGTCAGAACCCCAATGCCACTCGATCAGGTTCTCGGCGATGCTCCG
ACGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCGC
AACCCTCGGTCCGATCTGATCTTAGACTGAGAATGAACTCCGTATG
Found at i:15013606 original size:878 final size:883
Alignment explanation
Indices: 15009630--15014615 Score: 5338
Period size: 874 Copynumber: 5.6 Consensus size: 883
15009620 GGTTCTTCGA
* * * * *
15009630 TCTGATCTTAGGCTAGGAATGAACTCTGTACGCCTAAGCCAACCGACGAAAAGAGCGAGCGGGGT
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAA-A-C--G-GGCG-
* * * * * * *
15009695 GGGCGGGCGGGCACTATAC-TTGTCCAGAGACACGAGATACGCAAGCTGTGGATCGATAGGGTGG
59 GCGCGGGCGGGCAC--TACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
15009759 TAGGTGGGTTTAGGCACATCTCCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTC
122 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
** * * *
15009824 CGACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTCTTCTATTTTTCA
187 ATACAATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
15009889 TGATTTTT-TAAACCTTTTGCGGTTC-GAGATTTTTTAAAAGTTTTTT-GGAAAGAGTTTTGAG-
251 CGATTTTTGAAAACTTTTTACGGTTCAG-GATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTG-GC
* * *
15009950 CCCAAA-TTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCAC---AAA---AGCTAGAAACT
313 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACT
* *
15010008 CAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTA
378 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
15010073 CTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
443 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
15010138 GAGATAGGTGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCC
507 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
*
15010203 CGGCCCCCCGATCGTCG-GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGATGATG
572 CGG-CCCCCGATCGTCGAGAACCCCAATGCCGCC-GTCAGGTTCT-CG-C-A-G---CGACGATG
* ** * *
15010267 GTGCCCTGGTGAAGAAAAATACGGCATCAGCACATGCCCGAGCCCAGCGTGTGCTGCTC-CAA--
628 GTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC-CGCAACC
*
15010329 --C-A-C---T-CG------G--TTCGG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCG
692 CTCGATCTAGTCCGATCCTAGACTTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* ** * * * * *
15010369 TATGCCTATGTCAAATCACGAAACGAGCGTGTGGACGCTCAACCAGCCAG-AGGGCGGGATTCGT
757 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAAGGGC-GGATGCGC
* * * ** *
15010433 AAGCCGGGGATCGATCGAGTCCCCCTCTGCATGCTGCCGATCCTGTTACCCCCAACCCTTTGTCC
820 AAGCCGGGGATCG-TCGGGT-CCCCTCTGCATGCTGCCGATCCTGCT-CCCGCAACCCTCAGTCT
15010498 GG
882 GG
*
15010500 T-TCGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGGTACGGACGGGC
1 TCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA---A---ACGGGC
* * * * * * *
15010564 TGGGCGAGCAGGCGGGCACTATGCCGACTAGAAAGACGGGATGCCGCAAGTCATGGATCGATAGG
58 --GGC--GCGGGCGGGCACTACGTCGACCAGAGAGACGGGATG-CGCAAGCCGTGGATCGATAGG
* * * *
15010629 GTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTGCATGCCAATACCATTTTTATGGCTTGTCA
118 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAA
* *
15010694 ATTCATACAATGGTTCCTTAAGGCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
183 ATTCATACAATGG-TCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
15010759 TTCACGATTTTTG-AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGG
247 TTCACGATTTTTGAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* **
15010823 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAGAAAAAAATTCAATTAAAAA
312 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAATTCAGCTAAAAA
*
15010888 CTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATGGC
376 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * *
15010952 TACTAGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAATGTTTGAT
441 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGAT
* * *
15011017 GAGGGATTGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGTGCACACCC
505 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
* *
15011082 CCCTCGGCTCCCTCGATCGTCG-GAACCCCAATGCCACTTGTCAGGTTCTTCGGCGATGCTCCGA
569 CCC-CGGC-CCC-CGATCGTCGAGAACCCCAATGCCGC-CGTCAGGTTC-TC-GC-A-G---CGA
* ** * **
15011146 CGATGGTGCTCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCAAC
623 CGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * ** *
15011211 AACCCTCGGTC-CGAT-CGATATTAGACTGA-GAATGAACTCCGTAT-C-TAGAC-GGGAATGAA
688 AACCCTCGATCTAG-TCCGATCCTAGACTTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * ** * *
15011270 CTCCGTATGTCC-AAGTTAA-CCACGAAATGAGCGTACGGGCGCTCAATCGCTAG-AGAGTCGAG
752 CTCCGTATG-CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGCCAGAAG-GGCG-G
* * * * * *
15011332 ATTCGC-AG-CGGGGATCCGT-GGGTCCCCTCTGCACGCTACC-ATCCTACT-ACGTGAACCACT
814 ATGCGCAAGCCGGGGAT-CGTCGGGTCCCCTCTGCATGCTGCCGATCCTGCTCCCG-CAACC-CT
*
15011392 CGATTC-GG
876 C-AGTCTGG
* *
15011400 TCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAG-CATCCGACGAAACGAGCGGGCGGACA
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA--A-CGGGCGG-C-
* * * * * *
15011464 GGCGAGCGGGCACTGGCATCGGCCAGAGAGACGGCATGCGTAAGCCGTGGATCGATAGGGTGGTA
61 -GCGGGCGGGCACT-ACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* *
15011529 GGCGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTTATGGCTTGAAAATTCA
124 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA-TTTTTATGGCTTGTAAATTCA
* *
15011594 TACAATGGTCCCTAAGCCTTCCGCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
188 TACAATGGTCCTTAAGCCTT-CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * *
15011659 AATTTTTCAAAACTTTTTGCGGTTC-GAGATTTTTGAAAATTTTTTCAGAAGGAGTTTTGG-CCC
252 GATTTTTGAAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * *
15011722 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGAAAGCACAAAAAAATTCAGCT-AAAACTCG
316 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCG
*
15011786 AAGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACT
380 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
15011850 GGCAGCAAACCTGTAAAATCTGAAATGCTCTTTACGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
445 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA-AGGGGTGTGAGTTCTCGAGGTTTGATGAGG
15011915 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCG
509 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
*
15011979 GCCCCCGATCGTC-AGAACCCCAATGCCGCCGCTCAGGTTCTCCGTGATGCTCCGACGATGGTGC
574 GCCCCCGATCGTCGAGAACCCCAATGCCGCCG-TCAGGTTCT-CG-CA-G---CGACGATGGTGC
** * * * * *
15012043 CCCGACGAAGAAAAATGTGGCACGAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTTGG
632 CCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA
** * * * * *
15012108 TCCGGTCTGATCTTTGAC-TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGC
697 TCTAGTCCGATCCTAGACTTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * **
15012172 CTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGCCGGCCAGAAGGGCGGGATACATAAGCC
762 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GCCAGAAGGGC-GGATGCGCAAGCC
* ** * ** * ** *
15012237 GGGGATCGACCGGGT-CCCTCTGTGTACTGTTGATCCAGCTATCACAA-CCTC-GATCTGG
825 GGGGATCG-TCGGGTCCCCTCTGCATGCTGCCGATCCTGCTCCCGCAACCCTCAG-TCTGG
* * *
15012295 TCTGATGTTAGACCTGGGAATGAACAT-CGTAT-CC-AAGCCAACAGACG-AAACGAGCGGCGAC
1 TCTGATCTTAGA-CTGGGAATGAAC-TCCGTATGCCTAAGCCAACCGACGAAAACGGGCGGCG--
* * * * * *
15012356 CGGGCGGGCA-TACCTGGA-GAGAGAGACAGGATGTGCAAGCCGTGGATCGATTGGGTGGTAGGT
62 CGGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
15012419 GGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATAAA
127 GGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
15012484 ATGGTCCCTTGAGCCTTCACGTGAAG-TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
192 ATGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
15012548 TTT-AAAACTTTTAACGGTTCGGGATTTTTTAAAATTTTTTTC-GAAGGAG-TTT-ACCCCAAAC
256 TTTGAAAACTTTTTACGGTTCAGGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * * * *
15012609 AT-GTAGACGTGATCCTTGTATTTTTTTTTGGCCTGCACAAAAAAATTCAAACTAAAAACTCAAA
320 TTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCAC-AAAAAATTC-AGCTAAAAACTCGAA
* *
15012673 GTGTATAAGATTTTGTGACCATTTG--GAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
382 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * * * *
15012736 TAGCAAACCTGTAATATCTCAAATGCTCTTTAAGGGGTATGAGATCTCGAGGTTTGATGAGGGAA
447 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
15012801 AGGGGGTCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
512 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
*
15012866 CCCGATCGTCGA-AACCCCAATGCCGTCGATCAGGTTCTC-C-G-G-CGATGGTGCCCCGGA-GA
577 CCCGATCGTCGAGAACCCCAATGCCGCCG-TCAGGTTCTCGCAGCGACGATGGTGCCCC-GACGA
* * *
15012925 AGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACACTCGATCTAGTCC
640 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTAGTCC
** * *
15012990 GATCCTAG-CTTAGGAATGAACTCCGTATGCTTAGACTGGGAACAAACTCTGTGTGCCTAAGTCA
705 GATCCTAGACTTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
15013054 ACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACGAGAGGGGCAGGATGCGCAAGCCGGGGATCA
770 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCG-CCAGAAGGGC-GGATGCGCAAGCCGGGGATC-
* *
15013119 GTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCCGCAACCCTCAGTCTGG
832 GTCGGGT-CCCCTCTGCATGCTGCCGATCCTGCT-CCCGCAACCCTCAGTCTGG
* *
15013173 TCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AAACGGGCGG-GTGGG
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGGGCGGCGCGGG
* * * *
15013236 CGTGCACTATGTCGACTAGAGAGACGGGATGCACAAGCCCGT-GATCGATAGGGTGGTAGGTGGG
66 CGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAG-CCGTGGATCGATAGGGTGGTAGGTGGG
** * * *
15013300 TTTAGGCACATCTTTTTATTTTTTCATGCCAATCCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
** *
15013365 GTCCTTAAGCCTTCGTGTGAAGTTTCAT-GC-AGACGACTCATTTT-TATTTTTCACGATTTTTG
195 GTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
15013427 AAAACTTTTTACGGTTTAGGATTTTTTAAACTTTTTTCGGAAGGATTTTTGGCCCCAAACTTAGT
260 AAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
15013492 ATACATGATCCTTGTA-TTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
15013556 GATTTTGTGACCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGGCAGCAAA
390 GATTTTGTGA-CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
15013621 CCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAGGGATA-GGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
15013685 CCAATATAAGGGCCAAGTACCAGCACCGATTGCACATCATGTGCGCACACCCCCCGGCCCCCCAT
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCGA-
* * *
15013750 TCG-CCAGAACCCCAATGCAGCCGGTCAGGTTCTCCGGCAATGCTCCGACGATGGTG-CTCGACG
582 TCGTCGAGAACCCCAATGCCGCC-GTCAGGTTCT-C-GC-A-G---CGACGATGGTGCCCCGACG
* * * * *
15013813 AAGAAAAATACGGCACCAGCACATGCCTGAAACCCAGGATGTGTTGCTGCAACCCTCGGTCCGGT
639 AAGAAAAATACGGCACCAGCACATGCCCG-AGCCCAGCATGTGCTGCCGCAA----C---CC--T
* *
15013878 CTGATCTTAGACTGTTGGATGAACTCGTCATGCTTAGAC-TGGGAATGAACT-CGTATGCTTAGA
694 C-GATC-T--A------G-T---C-CG--AT-CCTAGACTTAGGAATGAACTCCGTATGCTTAGA
* * * * * * *
15013941 CTAGGAATG-ACTCCGTATGCCTTAAGTCGACCC-CGAAACGAACGGTGTGGGTGCTCAGTCGGG
741 CTGGGAATGAACTCCGTATGCC-TAAGTCAACCCACGAAACGAGC-GTGCGGGCGCTCAG-CCGC
* * *
15014004 CAGAAGGGCGAGATGCGCAAGCC-GGGATCGACTGGGTCCCCTCTGCATGCTGCCGATCCTACTA
803 CAGAAGGGCG-GATGCGCAAGCCGGGGATCGTC-GGGTCCCCTCTGCATGCTGCCGATCCTGCTC
*
15014068 TCGCAACCCTCAGTCTGG
866 CCGCAACCCTCAGTCTGG
* * *
15014086 TCCGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCGACGAAATAAGCGGGCGG-GC
1 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA-AA-CGGGCGGCGC
* * *
15014150 GGGCGGGCACTACGTCGGCCAAAGAGACGGGCTGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
63 GGGCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** *
15014215 GGTTTAGGGTCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
128 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
15014280 TGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCATTTTCTATTTCTCATGATTT
193 TGGT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
*
15014345 TTG-AAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
257 TTGAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
15014409 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAG-TGAAAAACTAGAAGTG
322 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCT-AAAAACTCGAAGTG
15014473 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
385 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
15014538 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGG-GTGCAAGTTCTCGAGGTTTGATGAGGGATA
450 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTG--AGTTCTCGAGGTTTGATGAGGGATA
15014602 -GGGGCCAATATAAG
513 GGGGGCCAATATAAG
15014616 TGTGCATACC
Statistics
Matches: 3515, Mismatches: 400, Indels: 351
0.82 0.09 0.08
Matches are distributed among these distances:
869 1 0.00
870 44 0.01
871 2 0.00
872 4 0.00
873 23 0.01
874 378 0.11
875 96 0.03
876 90 0.03
877 61 0.02
878 269 0.08
879 97 0.03
880 2 0.00
881 131 0.04
882 77 0.02
883 123 0.03
884 243 0.07
885 85 0.02
886 36 0.01
887 86 0.02
888 88 0.03
889 87 0.02
890 40 0.01
891 17 0.00
892 28 0.01
893 47 0.01
894 270 0.08
895 180 0.05
896 79 0.02
897 14 0.00
898 4 0.00
899 15 0.00
900 51 0.01
901 20 0.01
902 4 0.00
903 9 0.00
904 11 0.00
905 33 0.01
906 23 0.01
907 8 0.00
908 3 0.00
909 1 0.00
910 1 0.00
913 62 0.02
914 27 0.01
915 30 0.01
916 67 0.02
917 140 0.04
918 24 0.01
919 5 0.00
920 87 0.02
921 157 0.04
922 35 0.01
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (883 bp):
TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAACGGGCGGCGCGGG
CGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCGATCGT
CGAGAACCCCAATGCCGCCGTCAGGTTCTCGCAGCGACGATGGTGCCCCGACGAAGAAAAATACG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTAGTCCGATCCTAGACT
TAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGCCAGAAGGGCGGATGCGCAAGCCGGGGATCGTCGGGTCCCCTCT
GCATGCTGCCGATCCTGCTCCCGCAACCCTCAGTCTGG
Found at i:15013941 original size:25 final size:25
Alignment explanation
Indices: 15013883--15013960 Score: 97
Period size: 25 Copynumber: 3.0 Consensus size: 25
15013873 CCGGTCTGAT
15013883 CTTAGACTGTTGG-ATGAACTCGTCATG
1 CTTAGACTG--GGAATGAACTCGT-ATG
15013910 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
*
15013935 CTTAGACTAGGAATG-ACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
15013960 C
1 C
15013961 CTTAAGTCGA
Statistics
Matches: 48, Mismatches: 1, Indels: 6
0.87 0.02 0.11
Matches are distributed among these distances:
24 3 0.06
25 26 0.54
26 10 0.21
27 9 0.19
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.29
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:15017025 original size:26 final size:26
Alignment explanation
Indices: 15016986--15017038 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15016976 CCATTCTGAT
* *
15016986 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
15017012 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
15017038 C
1 C
15017039 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:15018231 original size:889 final size:883
Alignment explanation
Indices: 15016132--15024837 Score: 9152
Period size: 901 Copynumber: 9.9 Consensus size: 883
15016122 AATGAACTCC
* ** * *
15016132 GTATGCCTAAGTCAACCCACGAAACAAGCGAACGGGCGCTCAGCAGGCCAGA-GGGCGGGATGCG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCG
* ** * * * *
15016196 CAAGCCGGGGATTGGCCGGGTCCCCCTCCGTGTGCTGCCGATCCTGTTACCGCAACCCACGGTCC
66 CAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCC
* *
15016261 AGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--GCGGG
131 TGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGG
** * * * *
15016324 CGGGCATGCGGGCACTACGTCGGCCAGAGAGACGGGATGCACATGCCATGGATCGATAGGGTGGT
196 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
15016389 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
261 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
*
15016454 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTT-ATGGCAAGACGATTCGTTTTCTATTTTTCAC
326 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * * * * * *
15016518 GATTTTTGAAACTTTTTACGGTGCGGGAA-TTTTGAAAAATCTTTCAGAAGGAGTTTTGGCCCGA
391 GATTTTTAAAACTTTTTACGGTTC--GAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
15016582 AACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAA
454 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC-AAAAAAAATTCAGCTAAAAACTCGA
*
15016647 AGTGTACAAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTG
518 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
15016711 GCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
583 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * * * *
15016776 ATA--GGGCCAATATAAGGGCCAGCCAATGCCAGCAACCATCGGACATCTTGTGCGCACACCTCG
648 ATAGGGGGCCAATATAAGGGCCA---AGTACCAGCACCCATCGCACATCATGTGCGCACACC-CC
* * * *
15016839 CTCGACCCCCCGATGGTCGGAACTCCCAATGCAGTCGGTCAGGTTCTCCGACGATGCTCCGGCGA
709 CCCGGCCCCCCGATCGTCGGAAC-CCCAATGCCGTCGGTCAGGTTCT-C--CGA---T-----GA
*** * * * *
15016904 TGGTGCCCCGGCAAAGACAAATG-TGCCACCAACACATGCCC-ATGCCTAGCATGTGCTGTCGCA
762 TGGTGCCCCGATGAAGAAAAATGCAG-CACCAGCACATGCCCGA-GCCCAGCATGTGCTGTCGCA
* * * *
15016967 ACCCTTGGTCC-ATTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACT
825 ACCCTCGGTCCGGTTC-GATCTTAGACTGGGAATGAACTTCATATGCTTAGACTG-G---GAA-T
* * * *
15017031 CCATATGCCTAAGTCAACCCACGAAAATGAGCGTGCGGGCGCTCAGCC-AGCCAGAGGGCCGAGA
1 --GTATGCCTAAGTCAACCCACG-AAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGA
* * * * * * *
15017095 TGCGCAAGCCAGGGATCGGTTGGGTCCCCTTCTACGTGCTGTCGATCCTGCTACCGTAACCCTCG
62 TGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCG
* * * * * *
15017160 GT-CTGGTTTGATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGGGCGG
127 GTCCT-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGA
* * *
15017224 GTGGACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGG
191 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* **
15017289 GTGGTAGTTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTTATGGCTTGTA
256 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCA-TTTTTATGGCTTGTA
* * * *
15017354 CATTCACACAATGGTCCCTTAAGCCTTCACGTGAAGTTTTCATGGCAAGATGACT-GTTTTCTTT
320 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG-TTTCATGGCAAGACGACTCGTTTTCTAT
*
15017418 TTTTCACGATTTTCAAAACTTTTTACGGTTCATGAATTTTTTAAAATTTTTTCGGAAGGAGTTTT
384 TTTTCACGATTTTTAAAACTTTTTACGGTTC--GAATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* * * *
15017483 AGCCCCAAACTTGGTAGACGTGATCCTTGTAGTTATTGTTGGCATGCACAAAAAATTCAGCCAAA
447 GGCCCCAAACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCAAAAAAAATTCAGCTAAA
15017548 AACTCGAAGTGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTCCCCAATTTCAGACACTTTAAT
511 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCAGACACTTTAAT
* * *
15017612 GGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTCAA-GGGGTCTGAGTTCTCGAGGTTT
575 GGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTT
**
15017676 GAAAAGGGATAGGGGGCCAATATAAGGGCCAA-TACCAGGCACCCAAT-GCACAATCATGTGCGC
640 GATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA-GCACCC-ATCGCAC-ATCATGTGCGC
* *
15017739 ACACCCCCCCGGCCCCCCGATCGCATCGGAACCCAAATGTCGTCGGTCAGGTTCTCCGATGATGG
702 ACACCCCCCCGGCCCCCCGATCG--TCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGG
* * * * *
15017804 TGCCCCCGATGAAGAGAAATACAGCACCAGCCCATACCCGAGCCTAGCATGTGCTGTCGCAACCC
765 TG-CCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC
* *
15017869 TCGGTCTGGTTCGATCTTATACTGGGAATGAACTTCATATGCTTAGACTGGGAAT
829 TCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAAT
* * *
15017924 GTATGCCTAAGTGAACCCACGAAACGACCATGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCG
* * * * * *
15017989 CAAGCC-GGGATCGATTGGGTCCCCCTCTGTGTCCTGCCGATCCTACTACCACAACCCTCAGTCC
66 CAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCC
* * * *
15018053 TATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTACCGACGAAATGAGCAAGCGGG
131 TGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGG
* * * * *
15018118 CCGGCGGGCGGGCACTACGACGACCAGAGAGACGGGATCCGCAAGCCGTGGATCGATAGGATGGT
196 CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* * * *
15018183 AGGTGGGTTTAGGAAGATCTTCATATTTCTGTGTGCCAATGACATTTTTATGGCTTGTAAATTCA
261 AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
15018248 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGCCGACTCATTTTCTATTTTTCCA
326 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT-CA
* * * * * * ***
15018313 TGATTTTCAAAACCTTTTGCGGTTCGAGATTTTTTTAAATTTTTTCAGAAGGAGTTTTGGAAACA
390 CGATTTTTAAAACTTTTTACGGTTCGA-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* *
15018378 AACTTCGTAGCCGTGATCCTTGTATTTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCG
454 AACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTCG
* * *
15018443 AAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCCTTTCAGACACTTTAGTGGCTACT
517 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
15018508 GGCAG-TAACCTTGTAAAATCTCAAATGCCCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATAAG
582 GGCAGCAAACC-TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
15018571 GGATA-GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCC
646 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCC
* * **
15018635 CCGACCCCCTGATCG-CTGGAACCCCAATGTTGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGAT
710 CCGGCCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCC---GA---T-----GAT
* * * *
15018699 GGTGCCCCGACGAAAGAAAAAATAC-GACACCAGCACATGCCCGAG-CCAGAATGTGCTGTTGCA
763 GGTGCCCCGATG-AAG-AAAAATGCAG-CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCA
* * *
15018762 ACCCTCGGTCCGGTCCGATCTTAGACAGGGAAATGAAC-TCTGTATGC-TAGACTGGGAAT
825 ACCCTCGGTCCGGTTCGATCTTAGACTGGG-AATGAACTTC-ATATGCTTAGACTGGGAAT
* * * * *
15018821 GAACTCCGTATCCTAAGTCAACCTATGAAACGAGCGTGCGGGGCGCTCAG-CTAGGCAGAGGGGC
1 GTA-T--G---CCTAAGTCAACCCACGAAACGAGCGTGC-GGGCGCTCAGCCGA-CCAGAGGGGC
* * * * *
15018885 GGGATACGTAAGCTCGGGGATCGATCGGGTCCCCCTCTAACGTGCTGTCGATCCTGCTTGCCGCA
58 GGGATGCGCAAGC-CGGGGATCGATCGGGTCCCCCTCT-GCGTGCTGCCGATCCTGC-TACCGCA
* * * * * *
15018950 ACCCTTGGTCCGGTCGGATCTTAGAATGGGAATGAACTCCTTATGCCTAAGCCAACC-TCGATAA
120 ACCCTCGGTCCTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGA-AA
* * * * * * *
15019014 TGACGCGGTGCGGG-GTAGTACGGGCGGGCCACTACGCCAGCCAGAGAGACAGGATACGCAATCC
184 CGA-GC-GAGCGGGCG--G-GCGGGCGGG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC
**
15019078 GTGGATCGATAGGGTGGTAGGTGGG-TTAGGCACATTCTTCACCTTTCTGCGTGCCAATTGCCAT
243 GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA-TCTTCATATTTCTGCGTGCCAA-TGCCAT
15019142 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG-CTTCACGTGAAGTTTCATGGCAAGACG
306 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * *
15019206 ACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTC
371 ACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTACGGTTCGA-ATTTTTTAAAATTTTTTC
* * *
15019271 GGAAGGAGTTTTGGCCCAAAACTTGATATACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
435 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAA
* * * *
15019336 AATTCAACTAAAAGCTCGAAGTGTACAAGATTTTG-GACAATTTGAAAAAAGTATCCCCATTTCA
499 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* *
15019400 GACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGT
564 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
* * * * *
15019465 TC-CTGAGGTTTGATTAGGGATAGGGGGCCAATATAAGGGTCAAGTACCAGCAGCCATTGCAAAT
629 TCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
** *
15019529 CATGTGCGCACA-CCCCCCAACCCCCCGATCGCCGGAACCCCAATGCC-TCGGTCAGGTTCTCC-
693 CATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCG
** * * *
15019591 --------G----G-TGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCATCTTCACGCGCTG
758 ATGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA---GCATGTGCTG
* * *
15019643 TCGCAACCCTCTGTCCAG-TCTGATATTAG-CTGGGAATGAA---C---T-C-----C-------
820 TCGCAACCCTCGGTCCGGTTC-GATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAAT
* * ** *
15019687 GTATGCCTAAGTTAACCCACGAAATGAGCGTGTAGGCGCTCAGTC-AGCCAGAGGGGCGGGATGC
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGC
* * * * * * * * *
15019751 GCAAGTCGGGGATCGATCGGATCCCCCTCTACGTGCTACCGATCCTGTTGCTGTAACCCTTGGTC
65 GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTC
* * * *
15019816 CTATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAGGCCAACCGACGAAACGAGCGGGCGG
130 CTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGG
*
15019881 G-GGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
195 GCGGG-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG
* * *
15019945 GTAGGTGGGTTTAGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTTTGGCTTGTAAATT
259 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * * * *
15020010 CATACGACGGTCCCTTAAGCCTTCATGCGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTT-
324 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * *
15020074 -C-------AAAACTTTTTGCGGTTCAGGATTTTTTAAAAATTTTTT-GGAAGGACTTTTGGCCC
389 ACGATTTTTAAAACTTTTTACGGTTC-GAATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCC
* * *
15020130 CAAACTTGGTAGACGTGATCCTTGTACTTTTGTTGGCGTGCATAAAAAAATTAAGCTAAAAACTC
452 CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAACTC
*
15020195 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCA-ACACTTTAATGGCTAC
516 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
15020259 TGGCAGCAAACCTGTAAAA-CTCAAATGCTCTTTATGGGGTTGTGAGTTCTCGAGGTTTGATGAG
581 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
15020323 GGATAGAGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCACCC
646 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC
* * * *
15020388 CCAGGCCCCTCGATCGTCGGAACCCCAATCCCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGG
710 CC-GGCCCCCCGATCGTCGGAACCCCAAT-GCC-GTC-GG---TCAGGT--T-CTCCGATGATGG
*** * *
15020453 TGCCCCGGCAAAGAAAAATGCAGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCT
765 TGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCT
*
15020518 CGGTCCGG-TCTGATCTTAGACTGGGAATGAA-TTCCATATGCTTAGACTTGGAATGAACACC
830 CGGTCCGGTTC-GATCTTAGACTGGGAATGAACTT-CATATGCTTAGAC-TGG---G-A-A-T
* * * * * * *
15020579 GTATGCCTAAGTCAACCCACAAAATGAGCGTGCAGGCCCTAAGCCGGCCAGAGGGGTGGGATGCG
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCG
* * * * * * *
15020644 CAAGCAGGGGATCGATCGGGCCCCCCTCTGTGTGCTGCCGATCCTGCTGCTGTAACTCTCGGT-C
66 CAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCC
** * * * *
15020708 TGGTCCAATCTTAGACTGGGAATGAACTCCGTATACCAAAGCCAACCGATG-AA--A-TGA----
131 T-GTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGG
*
15020765 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGAC-GGATGCGCAAGCCATGGATCGATA-GGTGG
195 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * * *
15020828 TAGGTGGGTTTAGACACATCTTCATTATTTCTACCTGCTAGTGCCATTTTTAT-GCTTGTAAATT
260 TAGGTGGGTTTAGGCACATCTTCA-TATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
15020892 CAAACAATGGTCCTTTTAAGCCTTCACGTGAAGTTTCATGGTAAGACGACTCGTTTTCTATTTTT
324 CATACAATGGTCC-CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* * * * *
15020957 CATGATTTTTTGACACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGAG--TT----
388 CACGA-TTTTTAAAACTTTTTACGGTTCGA-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* **
15021016 -----C----T-----TGATCCTTGTATTTTTGTTAGCATGCAAAAAAAAAATTCATTTAAAAAC
451 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGC--AAAAAAAATTCAGCTAAAAAC
15021067 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
514 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
15021132 ACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGCGTGTGAGTTCTCGAGGTTTGATG
579 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
15021197 AGGCATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTTACGCACA-CCC
644 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* **
15021261 CCCGGCCACCCCGATCATCGGAACCCCAATATCGTCGGTCCAGGTTCTCCGACGATACTCTGGCG
709 CCCGGCC-CCCCGATCGTCGGAACCCCAATGCCGTCGGT-CAGGTTCT-C--CG--A---T---G
* * * *
15021326 ATGGTGCCCCGATGAAG-AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCACAA
761 ATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAA
** * **
15021390 CCCTCGGTTTGGTTCGATCTTAGA-T-----T--AC--GA-ATG---A-ACT----CC
826 CCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAAT
** * * * * * * *
15021429 GTATGCCTAAGTCAACCTGCAAAACG-GACGTGCGGGTGCTCAGCTGGCCGGATGGGTGGGATGC
1 GTATGCCTAAGTCAACCCACGAAACGAG-CGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGC
* *
15021493 AG-AA-TCGGGGATCGGTCGGGTCCCCCTCTGC---CT---G---CTG-T--CGCAACCCTCGGT
65 -GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGT
* * * *
15021544 CCAGTGCT-ATCTTAGAATGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGT
129 CCTGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGC
* * * * *
15021608 GGACAGGCAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATGGA-AGGGT
193 GGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
15021672 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA-TTTTAGAGGCTTGTAAA
258 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTA-TGGCTTGTAAA
* * *
15021736 TTCATACAATGGTCCCTTAAGCCTTCTCGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTT
322 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
*
15021801 TCACAATTTTTGAAAACTTTTTACGGTTCGAGATTTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
387 TCACGATTTTT-AAAACTTTTTACGGTTCGA-A-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * **
15021866 CCCCAAA-TTGGTAGACGTGATCCTTGTA-TTTT-TTGGTAGGTCATAAAGGAATTCAGCTAAAA
449 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-CA-AAAAAAATTCAGCTAAAA
* * *
15021928 ACTCG-AGTATACAAGATTTTGTGACCATTTGAAAAAACTGT-CCCATTTCAGGCACTTTAATGG
512 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
15021991 CTACTGGCAGCAAACCTGTAAAATCTTCAAATGCTC-TTAAGGGGGTGTGAGTTCTCGAGGTTTG
577 CTACTGGCAGCAAACCTGTAAAATC-TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
*
15022055 ATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATTGTGCGCACA
641 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-TGTGCGCACA
* * *
15022120 CCCTCCCCCGGCCCCCCTGATCGTCGGAACCCCAATGCGCCCGATCAGGTTCTTCGGCAATGCTT
705 -CC-CCCCCGGCCCCCC-GATCGTCGGAACCCCAAT--G-CCG-TC-GG-TC--AGG---TTCTC
* * * * * *
15022185 CGACGATGGTGACCCGACGAAGAAAAATTCAGAACCGGCACATGCCCGAGCCCAGCATGTGCTGT
756 CGATGATGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGT
** * *
15022250 CGCAACCCTCGGTCAAGTTCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTAGAATGAA
821 CGCAACCCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACT-G--GGAA
15022315 CT
883 -T
* * * * *
15022317 CCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGCAGGATG
1 --GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATG
* * * * * ** **
15022382 CGCACGCCAGGGATCGGTCGGGTCCCCCTCTGCGTGTTGCCAATCCTATTATTGCAACCCTCGGT
64 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGT
*
15022447 -CTGGTC-GAATCTT-GCACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGA
129 CCT-GTCTG-ATCTTAG-ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGA
* * ** *
15022505 GCGGGCGGGCGGGC-GGCACTACGCCGGCAAGAGATA-TAGATGCGCAAGCTGTGGATCGATAGG
191 GCGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * *
15022568 GTGGTAGGTGGGATTAGGCACATCTTCATATTTCTGCATGCCAATGCAATTTTTATGGCTTGTAA
256 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
* * * *
15022633 ATTCATACATTGGTCCCTTAAGCCTTCGCGTGAAGTTTAATGGCAAGACGACTTGTTTTCTATTT
321 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
15022698 TTCACAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
386 TTCACGATTTTTAAAACTTTTTACGGTTCGA-ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * *
15022763 CCCAAACTTGGTAGACATGATCCTTGTGTTTTTGTTGTCATGCATATAAAAATTCAGCTAAAAAC
450 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAAC
* *
15022828 TTGAAGTGTACAAGA-TTT-TGACCATTTGAAAAAAGTGT-TCCATTTCAGACACTTTAATGGCT
514 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * *
15022890 ACTGGCAGCAAACTTGTAAATTCTCAAATGCTCTTTAAAGGGGTGCT-AGTTCTCGAGGTTTGAT
579 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTCGAGGTTTGAT
* *
15022954 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCT
643 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* *
15023019 CCCCGGCCCCCTGATCGTCGGAACCCCATTGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGA
708 CCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC---GA-----T---GA
* * * * * *
15023084 TGGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATTTGCTATTGCAAC
762 TGGTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAAC
* * * * * *
15023149 ACTCGGTCTGATCCAATCTTAGACT-GG---GAA-TT-A-A--C-T---C------C
827 CCTCGGTCCGGTTCGATCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAAT
* * * * ** *
15023187 GTATGCCTAAGTCAACCCATGAAATGACCGTGCGGGCGCTCAGCCGACTAG-GTTCGCGTGATGC
1 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAG-GGGCGGGATGC
** * * * * * * **
15023251 GCAAGCCGGGGATCGGCCAGGTCCCCCTCTGCGTGCTGCTGATCCTACTTCCACAACCTTCAATC
65 GCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTC
* *
15023316 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGA---A----
130 CTGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGG
* * * *
15023374 -CGGGCGGGCGGGCACTACACCGACCAGAGAGACGGGATGTGCAAACCGTGGATCGATAGGGTGG
195 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
15023438 TAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTGTGGCTTGTAATTTC
260 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
15023503 ATGCAACGGT-CCTGTAAGCCTTCACGTGAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTC
325 ATACAATGGTCCCT-TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * *
15023567 ATGATTTTTGAAACTTTTTACGGTTCCGGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCC
389 ACGATTTTTAAAACTTTTTACGGTT-CGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC
* *
15023632 AAACTTGGTAGACGTGATACTTGTATTTTTGTTGACATG-AACAAAAAATTTCAGCTAAAAACTC
453 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAA-AAAAAA-TTCAGCTAAAAACTC
15023696 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
516 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
15023761 TGCCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
581 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* *
15023826 GGATAGGGGGCCAATATAAGGGCCAAGTACCA-CACCCATCGCACATCATGTGTGCATA-CCCCC
646 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *
15023889 CGGCCCCCCCGATCGTTGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATGCCCCGACGATG
711 CGG-CCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC---GAT--------GATG
* * * * * * * *
15023954 GTGCCCCGGTAAAGAAAAATAC-G-ATGCCAGCACATGCTCGAGCGCAGCATGTGTTGCCACAAC
764 GTGCCCCGATGAAGAAAAATGCAGCA--CCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAAC
* * ** *
15024017 CCTCGATCC-GATCTGATCTTAGGTTGGGAATGAAC-TCGGTATGCTTAGACTGGGAATGAACT
827 CCTCGGTCCGGTTC-GATCTTAGACTGGGAATGAACTTC-ATATGCTTAGACT-GG---GAA-T
* * * * *
15024079 CCGTATGCCTAGGTCAACGCACGAAACGAGCGTGCGGGCGCT-AACCGGCAAGAGGGGCGGGATG
1 --GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATG
* * * * * * * **
15024143 CGCAAGCTGAGGATCGACCGGGTCCCCTTCTGCGTGCTGCCGATCCTACTGCCGCAACCTTCTAT
64 CGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGT
** * * * *
15024208 CAGGT-TCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCTATCAATGAAACGAGCG-GA
129 CCTGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAG-
** * * * * * ** *
15024271 CGGGTAGGCGGGTGGGCACTACGCCAGCCAAAGAGACGGGATGCTCAAGTCACGGATCGATAGGA
192 CGGGCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* * * *
15024336 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAATTTCATGGCTTGTAAA
257 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
** * * * * *
15024401 TTGGTAAAATGGTCCCTTAAGCCTACATGTGAAGTTTCATGGCTAGATGACTCGTTTTCTATTTT
322 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * * **
15024466 TCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAAGG-GTTTTTCAC
387 TCACGATTTTTAAAACTTTTTACGGTTC-GAATTTTTTAAAATTTTTTCGGAAGGAG-TTTTGGC
* * * ** * * *
15024530 CCCCAACCTGGTACAAATTATCCTTGCATTTTTATTGGCATGCATAAAAAAATTCAGCTAAAAAC
450 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAAAC
*
15024595 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCA
514 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
15024660 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
579 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
15024725 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCC
644 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* * * *
15024790 CCTCAGCTCCCTCGATCATCAGAACCCCAATGCCGTCGGTCAGGTTCT
709 CC-CGGC-CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCT
15024838 TCGGTCTGAT
Statistics
Matches: 6625, Mismatches: 803, Indels: 751
0.81 0.10 0.09
Matches are distributed among these distances:
837 52 0.01
838 4 0.00
839 1 0.00
840 4 0.00
841 93 0.01
842 148 0.02
843 42 0.01
844 32 0.00
845 118 0.02
846 97 0.01
847 2 0.00
848 4 0.00
849 24 0.00
850 95 0.01
851 120 0.02
852 18 0.00
853 1 0.00
854 11 0.00
855 2 0.00
856 59 0.01
857 18 0.00
858 23 0.00
859 30 0.00
860 26 0.00
861 126 0.02
862 53 0.01
863 27 0.00
864 36 0.01
865 161 0.02
866 272 0.04
867 18 0.00
868 337 0.05
869 133 0.02
870 5 0.00
871 6 0.00
872 12 0.00
873 32 0.00
874 91 0.01
875 43 0.01
876 159 0.02
877 19 0.00
878 4 0.00
879 1 0.00
880 4 0.00
881 1 0.00
882 79 0.01
883 101 0.02
884 37 0.01
885 14 0.00
886 57 0.01
887 38 0.01
888 183 0.03
889 347 0.05
890 128 0.02
891 53 0.01
892 165 0.02
893 241 0.04
894 51 0.01
895 2 0.00
896 65 0.01
897 273 0.04
898 301 0.05
899 37 0.01
900 6 0.00
901 439 0.07
902 66 0.01
903 198 0.03
904 67 0.01
905 105 0.02
906 74 0.01
907 96 0.01
908 236 0.04
909 93 0.01
910 123 0.02
911 90 0.01
912 140 0.02
913 114 0.02
914 42 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (883 bp):
GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCG
CAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCC
TGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGG
CGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTTAAAACTTTTTACGGTTCGAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAAAAACTCGAAGT
GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCC
CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGGTGCCCCGATGAAGAAA
AATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTTCGATCT
TAGACTGGGAATGAACTTCATATGCTTAGACTGGGAAT
Found at i:15018831 original size:25 final size:26
Alignment explanation
Indices: 15018783--15018831 Score: 73
Period size: 25 Copynumber: 1.9 Consensus size: 26
15018773 GGTCCGATCT
*
15018783 TAGACAGGGAAATGAACTCTGTATGC
1 TAGACAGGGAAATGAACTCCGTATGC
*
15018809 TAGACTGGG-AATGAACTCCGTAT
1 TAGACAGGGAAATGAACTCCGTAT
15018832 CCTAAGTCAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 13 0.62
26 8 0.38
ACGTcount: A:0.33, C:0.16, G:0.27, T:0.24
Consensus pattern (26 bp):
TAGACAGGGAAATGAACTCCGTATGC
Found at i:15020583 original size:26 final size:26
Alignment explanation
Indices: 15020532--15020584 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15020522 CCGGTCTGAT
**
15020532 CTTAGACTGGGAATGAATTCCATATG
1 CTTAGACTGGGAATGAACACCATATG
* *
15020558 CTTAGACTTGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCATATG
15020584 C
1 C
15020585 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCATATG
Found at i:15022315 original size:25 final size:26
Alignment explanation
Indices: 15022273--15022324 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 26
15022263 CAAGTTCGAT
*
15022273 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
*
15022299 CTTAGACT-AGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
15022324 C
1 C
15022325 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 16 0.67
26 8 0.33
ACGTcount: A:0.31, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:15025416 original size:629 final size:630
Alignment explanation
Indices: 15024324--15025466 Score: 1788
Period size: 629 Copynumber: 1.8 Consensus size: 630
15024314 CTCAAGTCAC
* * *
15024324 GGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCAATTTC
1 GGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTGCATATTTCTACATGCCAATGCCAATTTC
* * * *
15024389 ATGGCTTGTAAATTGGTAAAATGGTCCCTTAAGCCTACATGTGAAGTTTCATGGCTAGATGACTC
66 ATGGCTTGTAAATTCGTAAAACGGTCCCTTAAGCCTACATGTGAAGTTTCATGGCAAGACGACTC
* * * * *
15024454 GTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCAGTTCGGGATTTTTTAAAATTTTTTTGGAA
131 GTCTTCTATTTTTCATGATTTTTGAAACCTTTTACAGTTCGGGATTTTTTAAAAGTTTTTCGGAA
* * * * *
15024519 GGGTTTTTCACCCCCAACCTGGTACAAATTATCCTTGCATTTTTATTGGCATGCATAAAAAAATT
196 GAGTTTTTCACACCCAAACTGGTACAAATGATCCTTGCATTTTTATTGGCATGCACAAAAAAATT
* *
15024584 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
261 CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACA
*
15024649 CTTTAATGGCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
326 CTTTAATGGCAACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
*
15024714 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
391 GAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
* * * * * *
15024779 GTGCACACCCCCCTCAGCTCCCTCGATCATCAGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTC
456 GCGCACACCCCCCCCAGCCCCCCCGATCATCAGAACCCCAATGCCGCCAGTCAGGTTCTTCGGTC
15024844 TGATCTTAGGCTAGGAATGAACTCTGTACGCCTAAGCCAACCGACGAAAAGAGCGAGCGGGTGGG
521 TGATCTTAGGCTAGGAATGAACTCTGTACGCCTAAGCCAACCGACGAAAAGAGCGAGCGGGTGGG
15024909 CGGGCGGGCACTATACTGTCCAGAGACACGAGATACGCAAGCTGT
586 CGGGCGGGCACTATACTGTCCAGAGACACGAGATACGCAAGCTGT
* * * *
15024954 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTGCATATTTCTACGTGCCAATGCCATTTTT
1 GGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTGCATATTTCTACATGCCAATGCCAATTTC
* *
15025019 ATGGCTTGTAAATTTCG-ACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACT
66 ATGGCTTGTAAA-TTCGTAAAACGGTCCCTTAAGCCTACATGTGAAGTTTCATGGCAAGACGACT
* *
15025083 CGTCTTCTATTTTTCATGATTTTTTAAACCTTTTACGGTTCGGGATTTTTTAAAAGTTTTTCGGA
130 CGTCTTCTATTTTTCATGATTTTTGAAACCTTTTACAGTTCGGGATTTTTTAAAAGTTTTTCGG-
* * * ** * *
15025148 AAGAG-TTTTGA-ACCCAAATTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
194 AAGAGTTTTTCACACCCAAACTGGTACAAATGATCCTTGCATTTTTATTGGCATGCACAAAAAAA
* *
15025211 TTCAGCTAGAAACTCAAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCTCATTTCAGA
259 TTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGA
*
15025276 CACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
324 CACTTTAATGGCAACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
15025341 TCGAGGTTTGATGAGAGATAGGTGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCAT
389 TCGAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
* ** *
15025406 GTGCGCACACCCCCCCCGGCCCCCCCGATTGTCGGAACCCCAATGCCGCCAGTCAGGTTCT
454 GTGCGCACACCCCCCCCAGCCCCCCCGATCATCAGAACCCCAATGCCGCCAGTCAGGTTCT
15025467 CCGACGATGC
Statistics
Matches: 460, Mismatches: 51, Indels: 5
0.89 0.10 0.01
Matches are distributed among these distances:
629 279 0.61
630 174 0.38
631 7 0.02
ACGTcount: A:0.27, C:0.21, G:0.22, T:0.30
Consensus pattern (630 bp):
GGATCGATAGGATGGTAGGTGGGTTTAGGCACATCTGCATATTTCTACATGCCAATGCCAATTTC
ATGGCTTGTAAATTCGTAAAACGGTCCCTTAAGCCTACATGTGAAGTTTCATGGCAAGACGACTC
GTCTTCTATTTTTCATGATTTTTGAAACCTTTTACAGTTCGGGATTTTTTAAAAGTTTTTCGGAA
GAGTTTTTCACACCCAAACTGGTACAAATGATCCTTGCATTTTTATTGGCATGCACAAAAAAATT
CAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATGGCAACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGAGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT
GCGCACACCCCCCCCAGCCCCCCCGATCATCAGAACCCCAATGCCGCCAGTCAGGTTCTTCGGTC
TGATCTTAGGCTAGGAATGAACTCTGTACGCCTAAGCCAACCGACGAAAAGAGCGAGCGGGTGGG
CGGGCGGGCACTATACTGTCCAGAGACACGAGATACGCAAGCTGT
Found at i:15026477 original size:25 final size:25
Alignment explanation
Indices: 15026449--15026497 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
15026439 CCGATCGATA
*
15026449 TTAGACTGAGAATGAACTCCGTATC
1 TTAGACCGAGAATGAACTCCGTATC
*
15026474 TTAGACCGGGAATGAACTCCGTAT
1 TTAGACCGAGAATGAACTCCGTAT
15026498 GTCCAAGTTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 22 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (25 bp):
TTAGACCGAGAATGAACTCCGTATC
Found at i:15027220 original size:901 final size:897
Alignment explanation
Indices: 15024839--15033883 Score: 10601
Period size: 901 Copynumber: 10.2 Consensus size: 897
15024829 TCAGGTTCTT
* * * * * *
15024839 CGGTCTGATCTTAGGCTAGGAATGAACTCTGTACGCCTAAGCCAACCGACGAAAAGAGCGAGCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-G-GC
** * * * * * *
15024904 GTGGGCGGGCGGGCACTA--TACTGTCCAGAGACACGAGATACGCAAGCTGTGGATCGATAGGGT
64 GACGGCGAGCGGGCACTACGT-C-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* *
15024967 GGTAGGTGGGTTTAGGCACATCTGCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
127 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA-
* * * *
15025032 TTC-GACAACGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCGTCTTCTATTTT
191 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * * * * * **
15025096 TCATGATTTTTTAAACCTTTTACGGTTCGGGATTTTTTAAAAGTTTTTCGGAAAGAGTTTTGAAC
256 TCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
* *
15025161 CCAAA-TTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAGAAACT
321 CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* * *
15025225 CAAAGTGTACAAGATTTTGTGACCATTAGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTA
386 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
15025290 CTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
451 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
15025355 GAGATAGGTGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCC
516 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCC
* ** * * *
15025420 CCCGGCCCCCCCGATTGTCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGACGATGCTCCGATGA
579 CCCGGCCCCCCCGATCGTCGGAACCCCAATGCC-CTGGTCAGGTTCTTCGGCGATGCTCCGACGA
** * * *
15025485 TGGTGCCCTGGTGAAGAAAAATACGGCATCAGCACATGCCCGAGCCCAGCGTGTGCTGCTC-CAA
643 TGGTGCCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC-CGCAA
*
15025549 --CAC--T-CG---G---TT---C--GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCG
706 CCCTCGGTCCGATCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* ** * * * * * * * *
15025589 TATGCCTATGTCAAATCACGAAACGAGCGTGTGGACGCTCAACCAGCCAGAGGGGCGGGATTCGT
771 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCGAGATGCGC
* ** * *
15025654 AAGCCGGGGATCGATCGAGTCCCCCTCTGCATGCTGCCGATCCTGTTACCCCAACCCTTTG-TC
836 AAGCCGGGGATCGAT-GGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCC-TCGATC
* *
15025717 CGGT-TCGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGGTACGGACG
1 CGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-A--G-CG
* * * * * * * * *
15025781 GGTGGGCGAGC-AGGCGGGCACTATGCCGACTAGAAAGACGGGATGCGCAAGTCATGGATCGATA
61 GG-CGACG-GCGA-GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
* * *
15025845 GGGTGGTAGGTGGGTTTAGGCACATCTTCATACTTCTGCATGCCAATACCATTTTTATGGCTTGT
123 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGT
* * * *
15025910 CAATTCATACAATGGTTCCTTAAGGCTTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
188 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* *
15025975 TTTTCACGATTTTTGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTTGGAAGGATTTTT
253 TTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTT
* **
15026039 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAGAAAAAAATTCAATTAAA
317 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
*
15026104 AACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-AGACACTTTAATG
382 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* * * * *
15026168 GCTACTAGCAGCAAACCTGTAAAATCCCAAATGCCCTTTAAGGGGGTGTGAGTTCTCAATGTTTG
447 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * *
15026233 ATGAGGGATTGGGGGCCAATATAAGGGCCAGGTACCAGCACCCATCGCACATCATGTGTGCACAC
512 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-
* * *
15026298 CCCCCTCGGCTCCCTCGATCGTCGGAACCCCAATGCCACTTGTCAGGTTCTTCGGCGATGCTCCG
576 CCCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCC-CTGGTCAGGTTCTTCGGCGATGCTCCG
* * **
15026363 ACGATGGTGCTCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCAA
639 ACGATGGTGC-CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* * *
15026428 CAACCCTCGGTCCGATCGATATTAGACTGAGAATGAACTCCGTAT-CTTAGACCGGGAATGAACT
703 CAACCCTCGGTCCGATCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* * * * *
15026492 CCGTATGTCC-AAGTTAACCCACGAAATGAGCGTACGGGCGCTCAGTCGGCTAGAGAGGCGAGAT
768 CCGTATG-CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCGAGAT
* * * * *
15026556 TCGCAAGCCGGGGATCCG-TGGGTCCCCCTCTGCACGCTACCCATCCTACTACCGTAACCCTCGA
832 GCGCAAGCCGGGGAT-CGATGGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGA
*
15026620 TT
896 TC
* *
15026622 CGGTCTGATCTTGGACTGGGAATGAACTCCGTATGCCTAAGCCATCCGACGAAACGAGCGGGCGG
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-G
* * * *
15026687 ACAGGCGAGCGGGCACTGCATCGGCCAGAGAGACGGCATGCGTAAGCCGTGGATCGATAGGGTGG
65 AC-GGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* *
15026752 TAGGCGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGAAAATTC
129 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
15026817 ATACAATGGTCCCCTAAGCCTTCCCGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
194 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* ** *
15026882 CAATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCCC
259 CGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCC
* * *
15026947 AAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGAAAGCACAAAAAAATTCAGCTAAAAACTCG
323 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
15027012 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACT
388 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
15027077 GGCAGCAAACCTGTAAAATCTGAAATGCTCTTTACGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
453 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
15027142 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
518 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * *
15027207 GCCCCCCCGATCGTCAGAACCCCAATGCCGCCGCTCAGGTTCTCCGGTGATGCTCCGACGATGGT
583 GCCCCCCCGATCGTCGGAACCCCAATGCC-CTGGTCAGGTTCTTCGGCGATGCTCCGACGATGGT
* * * * *
15027272 GCCCCGACGAAGAAAAATGTGGCACGAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTT
647 G-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * *
15027337 GGTCCGGTCTGATCTTTGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATG
711 GGTCCGATC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15027402 CCTAAGTCAACCCACGAAATGAACGTGCGGGCGCTCAGCCGGCCAGA-AGGGCGGGATACGTAAG
775 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGA-GGCGAGATGCGCAAG
* ** * ** * *
15027466 CCGGGGATCGACCGGGTCCCCCTCTGTGTACTGTTGATCC-AGCTATCACAACCCTCGATC
839 CCGGGGATCGA-TGGGTCCCCCTCTGCATGCTGCCGATCCTA-CTACCGCAACCCTCGATC
* * * *
15027526 TGGTCTGATGTTAGACTGGGAATGAACAT-CGTATCCCTAAGCCAACAGACGAAACGAGCGGGCG
1 CGGTCTGATCTTAGACTGGGAATGAAC-TCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* ** * * *
15027590 AC--CGGGCGGGCACTACG-CTGGAGAGAGAGACAGGATGTGCAAGCCGTGGATCGATTGGGTGG
65 ACGGCGAGCGGGCACTACGTC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
*
15027652 TAGGTGGGTTTAGGTACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
129 TAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTC
* *
15027717 ATAAAATGGTCCCTTGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
194 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * **
15027782 CGATTTTTAAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTC-GAAGGAGTTTTCACCCC
259 CGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAA-TTTTTTCGGAAGGAGTTTTGGCCCC
* * * * *
15027846 AAACATGGTAGACGTGATCCTTGTATTTTTTTTGGCCTGCACAAAAAAATTCAACTAAAAACTCA
323 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
15027911 AAGTGTATAAGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
388 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * * *
15027976 GGTAGCAAACCTGTAATATCTCAAATGCTCTTTAAAGGGGTATGAGATCTCGAGGTTTGATGAGG
453 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
15028041 GAAAGGGGGTCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
518 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * *
15028106 GCCCCCCCGATCGTCGAAACCCCAATGCCGTCGATCAGGTTC-TC--C---G----G-CGATGGT
583 GCCCCCCCGATCGTCGGAACCCCAATGCCCT-GGTCAGGTTCTTCGGCGATGCTCCGACGATGGT
* * * *
15028160 GCCCCGGA-GAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACACT
647 G-CCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * ** *
15028224 CGAT-CTAGTCCGATCCTAG-CTTAGGAATGAACTCCGTATGCTTAGACTGGGAACAAACTCTGT
710 CGGTCCGA-T-CGATCTTAGAC-TGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
15028287 GTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGACGAGAGGGGC-AGGATGCGC
772 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCGA-GATGCGC
* * * *
15028351 AAGCCGGGGATC-AGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTC-AGTC
836 AAGCCGGGGATCGA-T-GGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGA-TC
* *
15028414 TGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGGGCG-
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA
* * * * * * *
15028474 -GGTGGGCGTGCACTATGTCGACTAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTA
66 CGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** * * *
15028538 GGTGGGTTTAGGCACATCTTTTTATTTTTTCATGCCAATCCCATTTTTATGGCTTGTAAATTCAT
131 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
** * *
15028603 ACAATGGTCCCTTAAGCCTTCGTGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCACG
196 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* * * *
15028668 ATTTTTGAAACTTTTTACGGTT-TAGGATTTTTTAAACTTTTTTCGGAAGGATTTTTGGCCCCAA
261 ATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* * * *
15028732 ACTTAGTATACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAA
325 ACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAA
*
15028797 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCCACTGG
390 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* * *
15028862 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTGATGAGGGA
455 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
15028927 TA-GGGGCCAATATAAGGGCCAAGTACCAGCACCGATTGCACATCATGTGCGCACACCCCCCGGC
520 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * *
15028991 CCCCCC-ATTCGCCAGAACCCCAATGCAGCC-GGTCAGGTTCTCCGGCAATGCTCCGACGATGGT
585 CCCCCCGA-TCGTCGGAACCCCAATGC--CCTGGTCAGGTTCTTCGGCGATGCTCCGACGATGGT
* * * * * *
15029054 GCCTCGACGAAGAAAAATACGGCACCAGCACATGCCTGAACCCAGGATGTGTTGCTGCAACCCTC
647 GCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
15029119 GGTCCGATCTGATCTTAGACTGGGAATGAACTCGTATGCTTAGACTGGGAATGAACTCGTATGCT
711 GGTCCGATC-GATCTTAGACT-GG---G-A-----ATG---A-AC------T---C-CGTATGCT
* * * * * * *
15029184 TAGACTAGGAATGAACTCCGTATGCCTAAGTCGACCCATGAAACGAACGTGTGGGTGCTCAGTCG
751 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
*
15029249 GGCAGA-AGGGCGAGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCCGATCCT
816 GCCAGAGA-GGCGAGATGCGCAAGCCGGGGATCGA-TGGGTCCCCCTCTGCATGCTGCCGATCCT
*
15029313 ACTATCGCAACCCTC-AGTC
879 ACTACCGCAACCCTCGA-TC
* * * * **
15029332 TGGTCCGATTTTAGACTGGGAATGAACTCCGTATGCCTAAGCGAACCGACGAAATAAGCGGGCG-
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA
* * *
15029396 -GGCGGGCGGGCACTACGTCGGCCAAAGAGACGGGCTGCGCAAGCCGTGGATCGATAGGGTGGTA
66 CGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
** *
15029460 GGTGGGTTTAGGGTCATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
131 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
15029525 ACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGATGACTCATTTTCTATTTCTCATG
196 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
* *
15029590 ATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
261 ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* *
15029655 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAG-TGAAAAACTAGAA
326 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAA
15029719 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
390 GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG
* **
15029784 CAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGCAAGTTCTCGAGGTTTGATGAGGGA
455 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGA
* *
15029849 TAGGGGGCCAATAT-------AAGT----G------T-G-----CA--T------A-CCCCCTGA
520 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * *
15029882 CTCCCCGATCGTCGGAACCCCAATGTCGCTGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGA
585 CCCCCCGATCGTCGGAACCCCAATG-CCCTGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTG-
* * * *
15029947 CCCTG-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCTAGCATGTGTTGCCACAACCCTCG
648 CCC-GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
15030011 GTCCG---G---TT---C---G-AT---CT---TA-G--T---CTGGGAATGAACTCCGTATGCC
712 GTCCGATCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * * * * * * *
15030051 TAAGTCAACCTATGAAACGAGCGTGCGGACGCTCAACAGGCCCGAGGGGCGGGATGCGCAAGCCA
777 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCGAGATGCGCAAGCCG
* ** * * * *
15030116 GTGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCAACTGCCGCAACCCTCGGTC
842 GGGATCGAT-GGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGATC
* * * * *
15030173 CGGTCCT-ATCTTAGACTGGGAATGATCTTCGTATGCCTCAGCCAACCGATGAAACGAACGGGCG
1 CGGT-CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
* * * * *
15030237 AGCGGGCGGGAGGGCAGGCACTACGCCGGCCAGATAGATGGGATGCGCAAGCCGTGGATCGTTAG
65 A-C-GGC--GA--GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAG
**
15030302 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTA
124 GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTA
* *
15030367 AATTCATACAATGGTCCCTTAAGCCTTTACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATT
189 AATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATT
* * * * *
15030432 TTTCATGATTTTTGAAACATTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGATTTTTGG
254 TTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * *
15030497 CCCCAAACTTGGTAGACATAATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAA
319 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* * *
15030562 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAACGGC
384 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
*
15030627 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTTA-TTCTCGAGGTTTGA
449 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG-TGAGTTCTCGAGGTTTGA
* *
15030691 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCAGGTGCGCACACC
513 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * * * *
15030756 CCCCGGCCCCCTCGAACGTCGGAACCCCAATGCCGTCGGTCAGGTTCTTCGGTGATGCTCCGGCG
578 CCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCCT-GGTCAGGTTCTTCGGCGATGCTCCGACG
** * *
15030821 ATGGTGCCCCGGTGAAGAAAAATGCAGCACCAGCTCATGCCCGAGCCCAGCATGTGCTGCCGCAA
642 ATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA
* *
15030886 CCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTGGGAATGAACTCC
706 CCCTCGGTCCGAT-CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* * * **
15030951 GTATGCCTAAGTCAA-CCAGCGAAACGAGCGTGCGGGCACTCAGTCGGACAGAG-GGATAGGATG
770 GTATGCCTAAGTCAACCCA-CGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCGA-GATG
** * * **
15031014 CGCAAGCCGGGGATCGACCAGGTCCCCCTCTACATGCTGTCGATCCTACTGTCGCAACCCTCGAT
833 CGCAAGCCGGGGATCGA-TGGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGAT
15031079 C
897 C
* * * *
15031080 CAGT-TCGATCTTAGACTCGGAATGAACTCCGCATGCCTCAGCCAACCGACGAAACGAGC--G-G
1 CGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
** * * *
15031141 AC-G-G-GCGGTTACTACGCCGGCCAGAGAGACGGGATGTGCAAGCCATGGATCGATAGGGTGGT
65 ACGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* *
15031203 AGATGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
130 AGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCA
15031268 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
195 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
** * *
15031333 GATTTTTGAAACTTTTTATGGTTTGGGATTTTTTAAAATTTTTTCGGAAGTG-GTTTTGGCCCCA
260 GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAG-GAGTTTTGGCCCCA
* * * *
15031397 AACTT-GTAGACATGATCCTTGTATTTTTGTTAGCGTGCACAAAAAAATTCAGCTAAAAACTCAA
324 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
15031461 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTA
389 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
15031526 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTTGAGGTTTGATGAGGG
454 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
15031591 ATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGTGCAATCCCCCCCC
519 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC-A-CACCCCCC
* * * ** * * *
15031656 GACCCCCCTGATCGTCGGAACCCAAATG---TCATCA-G----TCAG-G-TTCTCCGACGATGCT
582 GGCCCCCCCGATCGTCGGAACCCCAATGCCCTGGTCAGGTTCTTCGGCGATGCTCCGACGATGGT
* * * *
15031711 GCCCCGACGAAGAAAAATGTGGCACCAGCACATGCTCGAGCCCAGCATATGCTACCGCAACCCTC
647 G-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
*
15031776 GGT-C---CGA---T---C------TG-A-T-C-T-T-C---GTCTGGGAATGAACTCCGTATGC
711 GGTCCGATCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * *
15031816 CTAAGTTAACCCAC-AGAACGAGCGCGCGGGCGCTCAGCCGGCCA-AAAGGGCGGGATGCGTAAA
776 CTAAGTCAACCCACGA-AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGA-GGCGAGATGCGCAAG
* * * * *
15031879 CCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTACCGCAACCCTCGGTC
839 CCGGGGATCGAT-GGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGATC
* ** * * * * *
15031939 TGGTCCAATCTTAGACTGAGATTGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGACG-
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA
* * * *
15032003 -GGCGGGCAGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
66 CGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * * *
15032067 GGTGGGTTTAGGCACATCTCCATATTTCTTCATGCCATTGCCATTTTTATGGCTTGTAAACTCAT
131 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
15032132 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATC
196 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-C
* * * **
15032197 -ATTTTTAAAACTTTTTGCGGTT-TAGGATTTTTGAAAATTTTTTTTGAAGGAGTTTTGGCCCCA
260 GATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
* * * * * *
15032260 AGCTTGGTAGACGCGATCCCTGTGTTTTTGTTGGTATGCGCAAAAAAATTCAGCTAAAAACTCGA
324 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
15032325 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTCAATGGCTACTG
389 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
15032390 GCAGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGG
454 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* *
15032455 ATAAGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCACC
519 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CC-CC
* ** * * *
15032520 CCGGCCCCCTCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTC-TCTGGCGATGCTCTGGCGA
580 CCGGCCCCCCCGATCGTCGGAACCCCAATGCC-CTGGTCAGGTTCTTC-GGCGATGCTCCGACGA
*
15032584 TGTTGGCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
643 TGGT-GCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * *
15032649 CCTTGGTCC-AGTCTGATCTTGGACTGGGAATGAACTCCTTATGCTTAGACTGGGAATGAACTCC
707 CCTCGGTCCGA-TC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC
* *
15032713 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGC-AGGATGC
770 GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCGA-GATGC
* * * * * * * * * *
15032777 GTAAGCCGAGGATCAACCGGGTCCCCCTCTACGTGTTGTCGATCCTGCTA-C-CAACACTCGATC
834 GCAAGCCGGGGATCGA-TGGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGATC
*
15032840 CGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA
* * *
15032904 -GGCGAGCGGGCACTACGTCGGCCAAAGAGACGGGCTACGCAAGCCGTGGATCGATAGGGTGGTA
66 CGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
15032968 GGTGGATTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGTCTTGTAAATTCAT
131 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
*
15033033 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCATC
196 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-C
* * * **
15033098 -ATTTTTAAAACTTTTTGCGGTT-TAGGATTTTTGAAAATTTTTTTTGAAGGAGTTTTGGCCCCA
260 GATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
** * * * * *
15033161 AGTTTGGTAGACGCGATCCCTGTGTTTTTGTTGGTATGCGCAAAAAAATTCAGCTAAAAACTCGA
324 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* *
15033226 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAATTCAAACACTTTAATGGCTACTG
389 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * * *
15033291 GTAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGCGAGTTCTCAAGGTTTGATGATGG
454 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
15033356 ATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGCACACACACGCCCG
519 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-C-CCCC
* * * * * * *
15033421 GGCCCCCACGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGCAATGCTCTGACGATGG
582 GGCCCCCCCGATCGTCGGAACCCCAATGCCCT-GGTCAGGTTCTTCGGCGATGCTCCGACGATGG
* * * * *
15033486 TGCCTCAACGAAGAAAAAAGTGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGGCGCAACCCT
646 TGCC-CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * *
15033551 CGTTCCGATCTGATCTTAGACTAGGAATCAATTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
710 CGGTCCGATC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
* * *
15033616 GCCTAAGTCAACCCACGAAACGAGCGTGCAGACGCTCAGTCGGCCAGATG-GGC-AGGATGCGCA
774 GCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA-GAGGCGA-GATGCGCA
* * ** * * * ** *
15033679 AGCCGGGGATCAACCGGGTCCCCCTCTATATGTTGCCGTTCCTGCTGTCGCAACACTCGATC
837 AGCCGGGGATCGA-TGGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGATC
*
15033741 CGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG-
1 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA
* * * *
15033805 -GGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGCTGCGCAAGCCGTGGATCGATAGGGTGGTA
66 CGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
15033869 GGTGGGTTTAGGCAC
131 GGTGGGTTTAGGCAC
15033884 TGTAGACACC
Statistics
Matches: 7068, Mismatches: 811, Indels: 553
0.84 0.10 0.07
Matches are distributed among these distances:
840 1 0.00
841 168 0.02
842 1 0.00
844 1 0.00
845 3 0.00
846 1 0.00
847 3 0.00
849 423 0.06
850 2 0.00
854 1 0.00
856 4 0.00
858 2 0.00
859 158 0.02
860 7 0.00
861 1 0.00
862 5 0.00
863 231 0.03
864 225 0.03
865 3 0.00
866 28 0.00
867 4 0.00
868 2 0.00
870 3 0.00
871 1 0.00
872 2 0.00
874 5 0.00
875 1 0.00
876 1 0.00
877 74 0.01
878 50 0.01
879 1 0.00
880 8 0.00
881 135 0.02
882 457 0.06
883 195 0.03
884 404 0.06
885 77 0.01
886 3 0.00
887 13 0.00
888 253 0.04
889 5 0.00
890 2 0.00
891 119 0.02
892 9 0.00
893 12 0.00
894 298 0.04
895 242 0.03
896 33 0.00
897 1 0.00
898 12 0.00
899 563 0.08
900 217 0.03
901 1026 0.15
902 170 0.02
903 330 0.05
904 99 0.01
905 91 0.01
906 88 0.01
907 167 0.02
908 2 0.00
912 1 0.00
914 1 0.00
916 4 0.00
917 1 0.00
918 177 0.03
919 5 0.00
921 2 0.00
922 422 0.06
923 12 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGA
CGGCGAGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG
ATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
CCCCCGATCGTCGGAACCCCAATGCCCTGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGCCC
GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
GATCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGAGGCGAGATGCGCAAGCCGGGGA
TCGATGGGTCCCCCTCTGCATGCTGCCGATCCTACTACCGCAACCCTCGATC
Found at i:15028723 original size:24 final size:25
Alignment explanation
Indices: 15028667--15028724 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
15028657 TATTTTTCAC
*
15028667 GATTTTTGAAACTTTTTACGGTTTAG
1 GATTTTTGAAACTTTTTACGG-TAAG
* *
15028693 GATTTTTTAAACTTTTTTCGG-AAG
1 GATTTTTGAAACTTTTTACGGTAAG
15028717 GATTTTTG
1 GATTTTTG
15028725 GCCCCAAACT
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
24 9 0.32
26 19 0.68
ACGTcount: A:0.22, C:0.07, G:0.19, T:0.52
Consensus pattern (25 bp):
GATTTTTGAAACTTTTTACGGTAAG
Found at i:15029166 original size:25 final size:25
Alignment explanation
Indices: 15029132--15029208 Score: 136
Period size: 25 Copynumber: 3.0 Consensus size: 25
15029122 CCGATCTGAT
15029132 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
15029157 CTTAGACTGGGAATGAACTCGTATG
1 CTTAGACTGGGAATGAACTCGTATG
*
15029182 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACT-CGTATG
15029208 C
1 C
15029209 CTAAGTCGAC
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 43 0.86
26 7 0.14
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (25 bp):
CTTAGACTGGGAATGAACTCGTATG
Found at i:15030933 original size:26 final size:26
Alignment explanation
Indices: 15030904--15030953 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15030894 TCGATCCGAT
15030904 CTTAGACTGGGAATGAACTCCGTAAG
1 CTTAGACTGGGAATGAACTCCGTAAG
15030930 CTTAGACTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15030954 TGCCTAAGTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTAAG
Found at i:15033595 original size:26 final size:26
Alignment explanation
Indices: 15033565--15033617 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15033555 CCGATCTGAT
*
15033565 CTTAGACTAGGAATCAATTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
* *
15033591 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
15033617 C
1 C
15033618 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:15033992 original size:19 final size:19
Alignment explanation
Indices: 15033951--15034004 Score: 65
Period size: 18 Copynumber: 2.8 Consensus size: 19
15033941 GCCCAATGCA
* * *
15033951 ATTTTTACTTTGTATTATT
1 ATTTTTTCTTTTTTTTATT
15033970 -TTTTTTCTTTTTTTTATT
1 ATTTTTTCTTTTTTTTATT
15033988 ATTTTTTCTTTCTTTTT
1 ATTTTTTCTTT-TTTTT
15034005 TTTTGTATTT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
18 15 0.50
19 10 0.33
20 5 0.17
ACGTcount: A:0.11, C:0.07, G:0.02, T:0.80
Consensus pattern (19 bp):
ATTTTTTCTTTTTTTTATT
Found at i:15033999 original size:23 final size:22
Alignment explanation
Indices: 15033963--15034015 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 22
15033953 TTTTACTTTG
15033963 TATTA-TTTTTTTTCTTTTTTT
1 TATTATTTTTTTTTCTTTTTTT
15033984 TATTATTTTTTCTTTCTTTTTTT
1 TATTATTTTTT-TTTCTTTTTTT
15034007 T-TGTATTTT
1 TAT-TATTTT
15034016 ATGTGTTTTA
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
21 5 0.17
22 6 0.21
23 18 0.62
ACGTcount: A:0.09, C:0.06, G:0.02, T:0.83
Consensus pattern (22 bp):
TATTATTTTTTTTTCTTTTTTT
Found at i:15034116 original size:14 final size:14
Alignment explanation
Indices: 15034080--15034171 Score: 52
Period size: 13 Copynumber: 6.7 Consensus size: 14
15034070 TGTTAATATG
* *
15034080 TATATGTATTTTTA
1 TATATTTATTATTA
*
15034094 TATAGTTATATATT-
1 TATATTTAT-TATTA
*
15034108 TATTATTATATTATAA
1 TA-TATT-TATTATTA
*
15034124 TTTATTTATTATTA
1 TATATTTATTATTA
15034138 T-TATTT-TATATT-
1 TATATTTAT-TATTA
15034150 T-TATTTATT-TTA
1 TATATTTATTATTA
*
15034162 TATTTTTATT
1 TATATTTATT
15034172 TATCTAATTA
Statistics
Matches: 62, Mismatches: 8, Indels: 17
0.71 0.09 0.20
Matches are distributed among these distances:
11 2 0.03
12 9 0.15
13 17 0.27
14 17 0.27
15 13 0.21
16 4 0.06
ACGTcount: A:0.30, C:0.00, G:0.02, T:0.67
Consensus pattern (14 bp):
TATATTTATTATTA
Found at i:15034122 original size:25 final size:23
Alignment explanation
Indices: 15034102--15034174 Score: 78
Period size: 25 Copynumber: 3.1 Consensus size: 23
15034092 TATATAGTTA
15034102 TATATTTATTATTATATTATAATT
1 TATATTTATTATTATATTAT-ATT
* *
15034126 TATTTATTATTATTATTTTATATT
1 TATAT-TTATTATTATATTATATT
*
15034150 T-TATTTATT-TTATATTTTTATT
1 TATATTTATTATTATA-TTATATT
15034172 TAT
1 TAT
15034175 CTAATTATAT
Statistics
Matches: 41, Mismatches: 5, Indels: 7
0.77 0.09 0.13
Matches are distributed among these distances:
21 4 0.10
22 12 0.29
23 3 0.07
24 8 0.20
25 14 0.34
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (23 bp):
TATATTTATTATTATATTATATT
Found at i:15034129 original size:22 final size:22
Alignment explanation
Indices: 15034104--15034202 Score: 85
Period size: 22 Copynumber: 4.3 Consensus size: 22
15034094 TATAGTTATA
15034104 TATTTATTATTATATTATAATT
1 TATTTATTATTATATTATAATT
*
15034126 TATTTATTATTATTATTTTATATTT
1 TATTTATTATTA-TA--TTATAATT
* *
15034151 TATTTATT-TTATATTTTTATT
1 TATTTATTATTATATTATAATT
* *
15034172 TATCTAATTATATATATGT-TATTT
1 TAT-TTATTAT-TATAT-TATAATT
15034196 TATTTAT
1 TATTTAT
15034203 CCTATAATAT
Statistics
Matches: 62, Mismatches: 8, Indels: 13
0.75 0.10 0.16
Matches are distributed among these distances:
21 8 0.13
22 16 0.26
23 8 0.13
24 14 0.23
25 16 0.26
ACGTcount: A:0.30, C:0.01, G:0.01, T:0.68
Consensus pattern (22 bp):
TATTTATTATTATATTATAATT
Found at i:15034196 original size:28 final size:26
Alignment explanation
Indices: 15034165--15034231 Score: 80
Period size: 28 Copynumber: 2.5 Consensus size: 26
15034155 TATTTTATAT
*
15034165 TTTTATTTATCTAATTATATATATGTTA
1 TTTTATTTATCT-ATAATATATAT-TTA
* *
15034193 TTTTATTTATCCTATAATATATCTTTT
1 TTTTATTTAT-CTATAATATATATTTA
15034220 TTTTATTTATCT
1 TTTTATTTATCT
15034232 GTTCTAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
26 2 0.06
27 12 0.34
28 19 0.54
29 2 0.06
ACGTcount: A:0.27, C:0.07, G:0.01, T:0.64
Consensus pattern (26 bp):
TTTTATTTATCTATAATATATATTTA
Found at i:15035173 original size:15 final size:14
Alignment explanation
Indices: 15035150--15035218 Score: 50
Period size: 15 Copynumber: 4.6 Consensus size: 14
15035140 GTTTATTTAA
*
15035150 TATTCTTTTCATCTT
1 TATT-TTTTTATCTT
*
15035165 TATTTTTTTTATTTT
1 TA-TTTTTTTATCTT
*
15035180 TGTTTTACTTT-TCTT
1 TATTTT--TTTATCTT
*
15035195 TATTTTTTTATTTT
1 TATTTTTTTATCTT
15035209 TATTTATTTT
1 TATTT-TTTT
15035219 TTTATTATTC
Statistics
Matches: 43, Mismatches: 6, Indels: 10
0.73 0.10 0.17
Matches are distributed among these distances:
13 3 0.07
14 12 0.28
15 23 0.53
16 5 0.12
ACGTcount: A:0.13, C:0.07, G:0.01, T:0.78
Consensus pattern (14 bp):
TATTTTTTTATCTT
Found at i:15035191 original size:21 final size:20
Alignment explanation
Indices: 15035163--15035219 Score: 64
Period size: 18 Copynumber: 2.9 Consensus size: 20
15035153 TCTTTTCATC
*
15035163 TTTATTTTTTTTATTTTTGT
1 TTTATTTTCTTTATTTTTGT
15035183 TTTACTTTTCTTTATTTTT-T
1 TTTA-TTTTCTTTATTTTTGT
* *
15035203 TAT-TTTTATTTATTTTT
1 TTTATTTTCTTTATTTTT
15035220 TTATTATTCT
Statistics
Matches: 33, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
18 13 0.39
20 7 0.21
21 13 0.39
ACGTcount: A:0.12, C:0.04, G:0.02, T:0.82
Consensus pattern (20 bp):
TTTATTTTCTTTATTTTTGT
Found at i:15035197 original size:30 final size:28
Alignment explanation
Indices: 15035161--15035224 Score: 87
Period size: 29 Copynumber: 2.3 Consensus size: 28
15035151 ATTCTTTTCA
*
15035161 TCTTTATTTTTTTTATTTTTGTTTTACTTT
1 TCTTTATTTTTTTTATTTTT-ATTTA-TTT
15035191 TCTTTA-TTTTTTTATTTTTATTTATTT
1 TCTTTATTTTTTTTATTTTTATTTATTT
15035218 T-TTTATT
1 TCTTTATT
15035225 ATTCTATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
26 4 0.12
27 5 0.16
28 4 0.12
29 13 0.41
30 6 0.19
ACGTcount: A:0.12, C:0.05, G:0.02, T:0.81
Consensus pattern (28 bp):
TCTTTATTTTTTTTATTTTTATTTATTT
Found at i:15035222 original size:26 final size:29
Alignment explanation
Indices: 15035161--15035234 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 29
15035151 ATTCTTTTCA
*
15035161 TCTTTATTTTTTTTATTTTTGTTTTACTTT
1 TCTTTA-TTTTTTTATTTTTGATTTACTTT
15035191 TCTTTATTTTTTTATTTTT-ATTTA-TTT
1 TCTTTATTTTTTTATTTTTGATTTACTTT
* *
15035218 T-TTTATTATTCTATTTT
1 TCTTTATTTTTTTATTTT
15035235 CTTTAAATGA
Statistics
Matches: 41, Mismatches: 3, Indels: 4
0.85 0.06 0.08
Matches are distributed among these distances:
26 14 0.34
27 4 0.10
28 4 0.10
29 13 0.32
30 6 0.15
ACGTcount: A:0.14, C:0.05, G:0.01, T:0.80
Consensus pattern (29 bp):
TCTTTATTTTTTTATTTTTGATTTACTTT
Found at i:15035223 original size:18 final size:18
Alignment explanation
Indices: 15035170--15035224 Score: 76
Period size: 18 Copynumber: 3.1 Consensus size: 18
15035160 ATCTTTATTT
*
15035170 TTTTTATTT-TTGTTTTA
1 TTTTTATTTATTTTTTTA
* *
15035187 CTTTTCTTTATTTTTTTA
1 TTTTTATTTATTTTTTTA
15035205 TTTTTATTTATTTTTTTA
1 TTTTTATTTATTTTTTTA
15035223 TT
1 TT
15035225 ATTCTATTTT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
17 7 0.22
18 25 0.78
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.82
Consensus pattern (18 bp):
TTTTTATTTATTTTTTTA
Found at i:15035406 original size:60 final size:60
Alignment explanation
Indices: 15035261--15035598 Score: 517
Period size: 60 Copynumber: 5.7 Consensus size: 60
15035251 AAACTTTCAA
* * *
15035261 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-AAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
*** *
15035320 -AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
*
15035379 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
15035439 AAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
1 AAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
* * *
15035499 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-AAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
*
15035558 --AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
15035599 CTACACAAAA
Statistics
Matches: 257, Mismatches: 18, Indels: 10
0.90 0.06 0.04
Matches are distributed among these distances:
57 38 0.15
58 44 0.17
59 16 0.06
60 158 0.61
61 1 0.00
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.34
Consensus pattern (60 bp):
AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
Found at i:15040119 original size:41 final size:40
Alignment explanation
Indices: 15040074--15040166 Score: 136
Period size: 41 Copynumber: 2.3 Consensus size: 40
15040064 ATGATTGTCA
*
15040074 AGGAGCATTTTACTTTTCAAAGTTTCGT-TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG--TCGTGTGCCTCTGTTTAG
15040115 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAG
15040156 AGGAGC-ATTTA
1 AGGAGCAATTTA
15040167 GAGGAGCAAT
Statistics
Matches: 49, Mismatches: 1, Indels: 5
0.89 0.02 0.09
Matches are distributed among these distances:
39 4 0.08
40 5 0.10
41 40 0.82
ACGTcount: A:0.23, C:0.16, G:0.23, T:0.39
Consensus pattern (40 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGTGCCTCTGTTTAG
Found at i:15040168 original size:12 final size:13
Alignment explanation
Indices: 15040151--15040179 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
15040141 GGTGCCTCTG
15040151 TTTAGAGGAGC-A
1 TTTAGAGGAGCAA
15040163 TTTAGAGGAGCAA
1 TTTAGAGGAGCAA
15040176 TTTA
1 TTTA
15040180 CTTTCCAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 11 0.69
13 5 0.31
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (13 bp):
TTTAGAGGAGCAA
Found at i:15040190 original size:53 final size:54
Alignment explanation
Indices: 15040110--15040220 Score: 206
Period size: 53 Copynumber: 2.1 Consensus size: 54
15040100 GTTGCCTCTG
*
15040110 TTTAGAGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC-A
1 TTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
15040163 TTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
1 TTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
15040217 TTTA
1 TTTA
15040221 CTTTCTCAAA
Statistics
Matches: 56, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
53 51 0.91
54 5 0.09
ACGTcount: A:0.25, C:0.15, G:0.25, T:0.34
Consensus pattern (54 bp):
TTTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAA
Found at i:15040244 original size:42 final size:42
Alignment explanation
Indices: 15040163--15040382 Score: 329
Period size: 42 Copynumber: 5.3 Consensus size: 42
15040153 TAGAGGAGCA
15040163 TTTAGAGGAGCAATTTACTTTC-CAAAGTCGTGGTGCCTCTG
1 TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTG
*
15040204 TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTA
1 TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTG
* * *
15040246 CTTAGAGGACCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTG
1 TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTG
*
15040287 TTTAGAGGAGCAATTTACTTT-TCCAAAGTCATGGTGCCTCTG
1 TTTAGAGGAGCAATTTACTTTCT-CAAAGTCGTGGTGCCTCTG
* * *
15040329 TTTAGAGGAGCAATTTAGGTTTCTCAAAGTCGTTGAGCCTCTG
1 TTTAGAGGAGCAATTTA-CTTTCTCAAAGTCGTGGTGCCTCTG
15040372 TTTAGAGGAGC
1 TTTAGAGGAGC
15040383 TTTGGTAAAA
Statistics
Matches: 162, Mismatches: 12, Indels: 8
0.89 0.07 0.04
Matches are distributed among these distances:
41 60 0.37
42 71 0.44
43 30 0.19
44 1 0.01
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (42 bp):
TTTAGAGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTG
Found at i:15040303 original size:83 final size:83
Alignment explanation
Indices: 15040164--15040382 Score: 323
Period size: 83 Copynumber: 2.6 Consensus size: 83
15040154 AGAGGAGCAT
* *
15040164 TTAGAGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTAC-TTTCTC
1 TTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTC-C
*
15040228 AAAGTCGTGGTGCCTCTAC
65 AAAGTCATGGTGCCTCTAC
*
15040247 TTAGAGGACCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCA
1 TTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCA
**
15040312 AAGTCATGGTGCCTCTGT
66 AAGTCATGGTGCCTCTAC
* * *
15040330 TTAGAGGAGCAATTTAGGTTTCTCAAAGTCGTTGAGCCTCTGTTTAGAGGAGC
1 TTAGAGGAGCAATTTA--TTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGC
15040383 TTTGGTAAAA
Statistics
Matches: 123, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
83 87 0.71
84 4 0.03
85 32 0.26
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (83 bp):
TTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCCA
AAGTCATGGTGCCTCTAC
Found at i:15040716 original size:12 final size:12
Alignment explanation
Indices: 15040699--15040806 Score: 56
Period size: 11 Copynumber: 9.8 Consensus size: 12
15040689 TATATAGTTA
15040699 TATATTTATTAT
1 TATATTTATTAT
*
15040711 TATA-TTATAAT
1 TATATTTATTAT
15040722 T-TATTTATTA-
1 TATATTTATTAT
*
15040732 T-T-GTTATTAT
1 TATATTTATTAT
15040742 TAT-TTTA-TAT
1 TATATTTATTAT
* *
15040752 TTTATTTATTTT
1 TATATTTATTAT
*
15040764 TGTATTT-TTAT
1 TATATTTATTAT
*
15040775 T-TATCTAATTA-
1 TATAT-TTATTAT
* *
15040786 TATATCTGTTAT
1 TATATTTATTAT
*
15040798 TTTATTTAT
1 TATATTTAT
15040807 CCTATAATAT
Statistics
Matches: 72, Mismatches: 15, Indels: 18
0.69 0.14 0.17
Matches are distributed among these distances:
9 6 0.08
10 13 0.18
11 29 0.40
12 24 0.33
ACGTcount: A:0.28, C:0.02, G:0.03, T:0.68
Consensus pattern (12 bp):
TATATTTATTAT
Found at i:15040718 original size:19 final size:18
Alignment explanation
Indices: 15040683--15040788 Score: 78
Period size: 18 Copynumber: 5.8 Consensus size: 18
15040673 TATGTATATG
15040683 TATTT-TTA-TATAGTTAT
1 TATTTATTATTATA-TTAT
15040700 ATATTTATTATTATATTAT
1 -TATTTATTATTATATTAT
* *
15040719 AATTTATTTATTATTGTTAT
1 TATTTA-TTATTA-TATTAT
15040739 TA-TTATT-TTATATT-T
1 TATTTATTATTATATTAT
* * *
15040754 TATTTATTTTTGTATTTT
1 TATTTATTATTATATTAT
15040772 TATTTATCTAATTATAT
1 TATTTAT-T-ATTATAT
15040789 ATCTGTTATT
Statistics
Matches: 72, Mismatches: 7, Indels: 16
0.76 0.07 0.17
Matches are distributed among these distances:
15 3 0.04
16 8 0.11
17 9 0.12
18 20 0.28
19 17 0.24
20 15 0.21
ACGTcount: A:0.29, C:0.01, G:0.03, T:0.67
Consensus pattern (18 bp):
TATTTATTATTATATTAT
Found at i:15040742 original size:31 final size:30
Alignment explanation
Indices: 15040704--15040778 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 30
15040694 AGTTATATAT
15040704 TTATTATTATATTATAATTTATTTATTATTG
1 TTATTATTAT-TTATAATTTATTTATTATTG
* *
15040735 TTATTATTATTTTATATTTTATTTATTTTTG
1 TTATTATTA-TTTATAATTTATTTATTATTG
*
15040766 -TATTTTTATTTAT
1 TTATTATTATTTAT
15040779 CTAATTATAT
Statistics
Matches: 40, Mismatches: 3, Indels: 4
0.85 0.06 0.09
Matches are distributed among these distances:
29 5 0.12
30 7 0.17
31 27 0.68
32 1 0.03
ACGTcount: A:0.27, C:0.00, G:0.03, T:0.71
Consensus pattern (30 bp):
TTATTATTATTTATAATTTATTTATTATTG
Found at i:15040807 original size:28 final size:26
Alignment explanation
Indices: 15040769--15040835 Score: 89
Period size: 28 Copynumber: 2.5 Consensus size: 26
15040759 ATTTTTGTAT
*
15040769 TTTTATTTATCTAATTATATATCTGTTA
1 TTTTATTTATCT-ATAATATATCT-TTA
*
15040797 TTTTATTTATCCTATAATATATCTTTT
1 TTTTATTTAT-CTATAATATATCTTTA
15040824 TTTTATTTATCT
1 TTTTATTTATCT
15040836 GTTCTAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
26 2 0.06
27 12 0.33
28 20 0.56
29 2 0.06
ACGTcount: A:0.25, C:0.09, G:0.01, T:0.64
Consensus pattern (26 bp):
TTTTATTTATCTATAATATATCTTTA
Found at i:15041782 original size:15 final size:14
Alignment explanation
Indices: 15041759--15041825 Score: 55
Period size: 15 Copynumber: 4.6 Consensus size: 14
15041749 GTTTATTTAA
*
15041759 TATTCTTTTCATCTT
1 TATT-TTTTTATCTT
*
15041774 TATTTTTTTTATTTT
1 TA-TTTTTTTATCTT
* *
15041789 TGTTTTATTTTTCTT
1 TATTTT-TTTATCTT
*
15041804 TA-TTTTTTATTTT
1 TATTTTTTTATCTT
15041817 TATTTTTTT
1 TATTTTTTT
15041826 TTATTATTCT
Statistics
Matches: 41, Mismatches: 8, Indels: 7
0.73 0.14 0.12
Matches are distributed among these distances:
13 8 0.20
14 13 0.32
15 18 0.44
16 2 0.05
ACGTcount: A:0.12, C:0.06, G:0.01, T:0.81
Consensus pattern (14 bp):
TATTTTTTTATCTT
Found at i:15041799 original size:10 final size:9
Alignment explanation
Indices: 15041772--15041833 Score: 58
Period size: 10 Copynumber: 6.7 Consensus size: 9
15041762 TCTTTTCATC
15041772 TTTATTTTT
1 TTTATTTTT
15041781 TTTATTTTTGT
1 TTTA-TTTT-T
15041792 TTTATTTTT
1 TTTATTTTT
15041801 CTTTA--TTT
1 -TTTATTTTT
15041809 TTTATTTTT
1 TTTATTTTT
15041818 ATTT-TTTTT
1 -TTTATTTTT
15041827 TATTATT
1 T-TTATT
15041834 CTATTTTCTT
Statistics
Matches: 45, Mismatches: 0, Indels: 15
0.75 0.00 0.25
Matches are distributed among these distances:
7 4 0.09
8 4 0.09
9 15 0.33
10 17 0.38
11 5 0.11
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.84
Consensus pattern (9 bp):
TTTATTTTT
Found at i:15041817 original size:23 final size:22
Alignment explanation
Indices: 15041772--15041840 Score: 79
Period size: 24 Copynumber: 3.1 Consensus size: 22
15041762 TCTTTTCATC
*
15041772 TTTATTTTTTTTA-TTTTT-GT
1 TTTATTTTTTTTATTTTTTATT
15041792 TTTATTTTTCTTTATTTTTTATT
1 TTTATTTTT-TTTATTTTTTATT
*
15041815 TTTATTTTTTTTTATTATTCTATT
1 TTTA-TTTTTTTTATT-TTTTATT
15041839 TT
1 TT
15041841 CTTTAAATGA
Statistics
Matches: 42, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
20 9 0.21
21 4 0.10
22 5 0.12
23 11 0.26
24 13 0.31
ACGTcount: A:0.13, C:0.03, G:0.01, T:0.83
Consensus pattern (22 bp):
TTTATTTTTTTTATTTTTTATT
Found at i:15041840 original size:17 final size:16
Alignment explanation
Indices: 15041786--15041845 Score: 52
Period size: 17 Copynumber: 3.6 Consensus size: 16
15041776 TTTTTTTTAT
15041786 TTTTGTTTTATTTTTCT-
1 TTTT-TTTTA-TTTTCTA
15041803 TTATTTTTTATTTT-TA
1 TT-TTTTTTATTTTCTA
15041819 TTTTTTTTTATTATTCTA
1 -TTTTTTTTATT-TTCTA
*
15041837 TTTTCTTTA
1 TTTTTTTTA
15041846 AATGAAAATC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
15 1 0.03
16 13 0.35
17 19 0.51
18 4 0.11
ACGTcount: A:0.13, C:0.05, G:0.02, T:0.80
Consensus pattern (16 bp):
TTTTTTTTATTTTCTA
Found at i:15041842 original size:7 final size:6
Alignment explanation
Indices: 15041779--15041833 Score: 51
Period size: 6 Copynumber: 9.3 Consensus size: 6
15041769 ATCTTTATTT
* * * *
15041779 TTTTTA TTTTT- GTTTTA TTTTTC TTTAT- TTTTTA TTTTTA TTTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
15041825 TTTATTA TT
1 TTT-TTA TT
15041834 CTATTTTCTT
Statistics
Matches: 39, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
5 8 0.21
6 27 0.69
7 4 0.10
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.84
Consensus pattern (6 bp):
TTTTTA
Found at i:15041979 original size:32 final size:32
Alignment explanation
Indices: 15041943--15042037 Score: 78
Period size: 32 Copynumber: 3.1 Consensus size: 32
15041933 TTTTTGAGGA
15041943 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
1 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
* ** *
15041975 AAAGTTTCAAA--AAAAATATTT--TT-GAGGA--
1 AAAG-TTGAAAGTATCAAT-TTTCCTTGGA-AATC
15042003 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
1 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
15042035 AAA
1 AAA
15042038 TTTTCAAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
27 5 0.11
28 7 0.16
29 6 0.13
30 6 0.13
31 6 0.13
32 10 0.22
33 5 0.11
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (32 bp):
AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
Found at i:15042010 original size:60 final size:60
Alignment explanation
Indices: 15041851--15042380 Score: 709
Period size: 60 Copynumber: 8.9 Consensus size: 60
15041841 CTTTAAATGA
* * *
15041851 AAATCAAAACTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAG
1 AAATC-AAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
*** *
15041912 AAAT-AAATTTTC-AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
* *
15041970 AAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
15042030 AAATCAAATTTTCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAG
1 AAATCAAATTTTCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTAG
* *** *
15042090 AAAT-AAATTTTCGAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
* * * *
15042149 AAATCAAATTCTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAT
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
*** *
15042209 AAAT-AAATTTTC-AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
* * * * * *
15042267 AAATCAAAGTTTAAAAAAAAACTATTTTTGAGGAAAAGTTGAAAATATCAATTTTCATCAA
1 AAATCAAATTTTCAAAAAAAA-TATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
*
15042328 AAAT-AAATTTTC--AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
15042381 CTACACAAAA
Statistics
Matches: 411, Mismatches: 50, Indels: 20
0.85 0.10 0.04
Matches are distributed among these distances:
57 32 0.08
58 93 0.23
59 80 0.19
60 165 0.40
61 41 0.10
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.34
Consensus pattern (60 bp):
AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTAG
Found at i:15042140 original size:119 final size:119
Alignment explanation
Indices: 15041867--15042380 Score: 729
Period size: 119 Copynumber: 4.4 Consensus size: 119
15041857 AAACTTTCAA
* * *
15041867 AAAAAAT--ATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-AAATTTTC-AAAA
1 AAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAA
*** * * *
15041928 AGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
66 AAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-AAATTTTC
***
15041983 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAA
1 AAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAA
*
15042048 AAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAATAAATTTTC
66 AAATATTTTTGA-GGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTC
* *
15042102 GAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTCTCAAAAA
1 AAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAA
* *
15042167 AAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTATAAATAAATTTTC
66 AAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTC
* * *
15042221 -AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTAAAAAA
1 AAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAA
* * *
15042285 AAACTATTTTTGAGGAAAAGTTGAAAATATCAATTTTCATCAAAAATAAATTTTC
66 AAA-TATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTC
*
15042340 AAAAAAT--ATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
15042381 CTACACAAAA
Statistics
Matches: 364, Mismatches: 26, Indels: 14
0.90 0.06 0.03
Matches are distributed among these distances:
116 6 0.02
118 135 0.37
119 173 0.48
120 50 0.14
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (119 bp):
AAAAAATGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAA
AAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTC
Found at i:15043477 original size:26 final size:26
Alignment explanation
Indices: 15043441--15043493 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15043431 CTGATTTGAT
15043441 CTTAGACTGGGAAAGAACTCCATATG
1 CTTAGACTGGGAAAGAACTCCATATG
* *
15043467 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCATATG
15043493 C
1 C
15043494 CTAAGTCAAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCATATG
Found at i:15045250 original size:26 final size:26
Alignment explanation
Indices: 15045211--15045263 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15045201 CCATTCTGAT
* *
15045211 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCATATG
15045237 CTTAGACTGAGAATGAACTCCATATG
1 CTTAGACTGAGAATGAACTCCATATG
15045263 C
1 C
15045264 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCATATG
Found at i:15047040 original size:26 final size:26
Alignment explanation
Indices: 15047003--15047055 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15046993 CCGGTCCGAT
*
15047003 CTTAGACAGGGAATGAACTCTGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
*
15047029 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACAGGGAATGAACTCCGTATG
15047055 C
1 C
15047056 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACAGGGAATGAACTCCGTATG
Found at i:15047492 original size:905 final size:903
Alignment explanation
Indices: 15042855--15052948 Score: 12983
Period size: 905 Copynumber: 11.3 Consensus size: 903
15042845 ATGTTATGAC
* * ** * *
15042855 AGGCACATCTTCATCTTTCTACGCGCCAATGCCATTTTTATGGCTTGTAAATTCATATAATGGAC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* **
15042920 CCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* *
15042985 ACTTTTTACGGTTTGGGATTTTTTAAAATTGTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAG
131 ACTTTTTACGGTTCGAGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
15043049 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
195 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
15043114 ATTTTGTGACCATTTGAAAAAAGTGTCCTCATTTCAGACACTTTAAGGGCTACTGGCAGCAAACC
260 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
15043179 TGTAAAATCTGAAATGCTTTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGAGATAGGGGGCC
325 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
15043244 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGACCCCTCGAT
390 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGAT
* * * * * * * *
15043309 CGTCGGAAACCCAATGCTGCCGGTTAAGTTCTTCGGAGATGCTCCGGCGATGGTTCCCCGACGAA
455 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAA
* * * * * * **
15043374 GAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAATCCTCGGTCTGATTTG
520 GAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCG
* ** *
15043439 ATCTTAGACTGGGAAAGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAG
585 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * *
15043504 TCACGAAATGAGTGTACGGGCGCTCAGTCGACCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
650 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
** * * * * ** *
15043569 CGGGTCCCCCTCTGTGTGCTGCTGATCCTTCTATCGTAACCCTCTCTACGGTCTGATCTTAGACT
715 CGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACT
* *
15043634 TGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGA----GC--G-GG-CGGGCGGGCACT
780 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGACGGGCGGGCACT
* *
15043691 ACGTCGGCCAGAGAAACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
845 ACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
15043750 AGGCACATCTTCATATTTTTACATGCCAATGCCATTTTTATAGCTTGTAAATTCATACAATAGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
15043815 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * *
15043880 ACTTTTTACGGTCCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTCGCCCCCAACTTGGTAAA
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
15043945 CATGATCCTTGTATTTTTGTTGGCATGCATACAAAAATTCAGCTAGAAACTCGAA-TGTACAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * * *
15044009 TTTTGTGGCTATTTGAAAAAAGTATCCTCATTTCAGACACTTTAATGGCTACTGGTA-CAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
15044073 GTAAAATTTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * *
15044138 ATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
391 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGATC
* * * ** * * * * *
15044203 GTCGGAAACCTAACGGTGTCGGTTAGGTTCTCCGGAGATGCCCCGACGATGGTTCCCCGACGAAG
456 GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAG
* * * *
15044268 AAAAATGCGGCACCAGCACATGCCCGAACCCAGCATGTGCTGCCACAA-CC-C--T-C-G---G-
521 AAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGA
15044323 TC-----C---G---G---TCTG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
586 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* ** * * **
15044372 CACGAAACAAGCGAACGGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATTGGCC
651 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
*** * * * *
15044437 GGGTCCCCCTCCGTGTGCTGCCGATCCTGTTACCGCAACCCACGGTCCAGTCCGATCTTAGACTG
716 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
* * **
15044502 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCATGCGGGCACTA
781 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGACGGGCGGGCACTA
*
15044567 CGTCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
846 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
15044625 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTGTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
15044690 CCTTAAGCCTTCACGTGAAGTTT-ATGGCAAGACGATTCGTTTTCTATTTTTCACGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * * * * *
15044754 ACTTTTTACGGTGCGGGAATTTTGAAAAATCTTTCAGAAGGAGTTTTGGCCCGAAACTTGGTAGA
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
15044819 TGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
*
15044884 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAATGGCTACTGGCAGCAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
15044949 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GAGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
15045013 ATATAAGGGCCAAGTGCCAGCACCCATCGGACATCTTGTGCGCACACCTCGCTCGACCCCCCCGA
391 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCCGA-CCCCCCGA
* * ** * *
15045078 TGGTCGGAACCCCAATGCAGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGGCAA
454 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGA
* * * * * * **
15045143 AGACAAATGTGCCACCAACACATGCCC-ATGCCTAGCATGTGCTGTCGCAACCCTTGGTCCATTC
519 AGAAAAATGCGACACCAGCACATGCCCGA-GCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
* * * *
15045207 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCATATGCCTAAGTCA
583 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
15045272 ACCCACGAAATGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGCCGAGATGCGCAAGCCAGGGATCG
648 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * * * *
15045337 GTTGGGTCCCCTTCTACGTGCTGTCGATCCTGCTACCGTAACCCTCGGTCTGGTTTGATCTTAGA
713 ATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGA
* * * * * ** *
15045402 CTAGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGGGCGGGTGGACGGGCGGGCGGGCA
778 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGACGGGCGGGCA
* * *
15045467 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGTTGGGTTT
843 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*** * *
15045528 AGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTTATGGCTTGTACATTCACACAATGGT
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTCATACAATGGT
* * * **
15045593 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTTGTTTTCTTTTTTTCACGATTTTCAA
65 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* *
15045658 AACTTTTTACGGTTC-ATGAATTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCAAACTTGGTA
130 AACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* *
15045722 GACGTGATCCTTGTATTATTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACAA
194 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
15045787 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
259 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * **
15045852 CTGTAAAATCTCAAAAGCTCTTCAAGGGGGTCTGAGTTCTCGAGGTTTGAAAAGGGATAGGGGGC
324 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
15045917 CAATATAAGGGCCAAATACCAGCACCCAAT-GCACATCATGTGCGCACACCCCCCCCGGCCCCCC
389 CAATATAAGGGCCAAGTACCAGCACCC-ATCGCACATCATGTGCGCACA-CCCCCCC-GACCCCC
* * *
15045981 CGATCGCCGGAACCCAAATGTCGTCGGTCAGGTTCTCC---GA---T-----GATGGTGCCCCGA
451 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGA
* * * * * * *
15046035 TGAAGAGAAATAC-AGCACCAGCCCATACCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTG
516 CGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCG
* * *
15046099 GTTCGATCTTATACTGGGAATGAACT-TCATATGCTTAGACT-GG---GAA-T--GTATGCCTAA
580 GTCCGATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * *
15046156 GTGAACCCACGAAACGACCATGCGGGCGCTCAGCCGACCAGA-GGGTGGGATGCGCAAGCCGGGG
644 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
** * * * * **
15046220 ATCGATCGGGTCCCCCTCTGTGTCCTGCCGATCCTACTACCACAACCCTCAGTCCTATCTGATCT
709 ATCGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCT
* * ** *
15046285 TAGACTGGGAATGAACTCCGTATGCCTAAGCCTACCGACGAAATGAGCAAGCGGGCCGG-CGGGC
774 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGG-TGGACGGGC
* * * *
15046349 GGGCACTACGACGACCAGAGAGACGGGATCCGCAAGCCGTGGATCGATAGGATGGTAGGTGGGTT
838 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
15046414 T
903 T
* * ** * *
15046415 AGGAAGATCTTCATATTTCTGTGTGCCAATGACATTTTTATGGCTTGTAAATTCATACAACGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * **
15046480 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGCCGACTCATTTTCTATTTTTCATGATTTTCAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *** * *
15046545 ACCTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGAAACAAACTTCGTAGC
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
15046610 CGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
15046675 TTTTGCGACCATTTGAAAAAAGTGTCCCCCTTTCAGACACTTTAGTGGCTACTGGCAGTAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
15046740 GTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
15046805 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCCGACCCCCCGA
391 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCG--CACACCCCCCCGACCCCCCGA
**
15046870 TCG-CTGGAACCCCAATGTTGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
454 TCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* * * *
15046934 AAGAAAAATACGACACCAGCACATGCCCAAGCCCAGAATGTGCTGTTGCAACCCTCGGTCCGGTC
518 AAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
*
15046999 CGATCTTAGACAGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
583 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
15047064 ACCTATGAAACGAGCGTGCGGGCGCTCAGCTGGGCAGAGGGGCGGGATACGTAAGTCGGGGATCG
648 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * *
15047129 ATCGGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTTGGTCCGGTCGGATCTTAGA
713 ATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGA
* * * * *
15047194 ATGGGAATGAACTCCTTATGCCTAAGCCAACCTACGAAATGAGCGGGCGGGTAGACGGGCGGGCA
778 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGACGGGCGGGCA
* * * * *
15047259 CTACGCCAGCCAGAGAGACAGGATACGCAATCCGTGGATCGATAGGGTGGTAGGTGGGTTT
843 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
** * *
15047320 AGGCACATCTTCACCTTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
15047385 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
15047450 ACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGATATA
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
15047515 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAACTAAAAGCTCGAAGTGTACAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
15047580 TTTTGGGACAATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
15047645 GTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTC-CTGAGGTTTGATTAGGGATAGGGGGCC
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAGGGATAGGGGGCC
* * * *
15047709 AATATAAGGGCCAAGTACCAGCAGCCATTGCAAATCATGTGCGCACA-CCCCCCAACCCCCCGAT
390 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGAT
*
15047773 CGCCGGAACCCCAATGCCGTCGGTCA--------GGT--T-CT-C--C---GGT--------GAA
455 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAA
* * * * *
15047813 GAAAAATGTGGCACCAGCACATGCCCGAGCCCATCTTCACGCGCTGTCGCAA-CC-C--T-C--T
520 GAAAAATGCGACACCAGCACATGCCCGAGCCCA---GCATGTGCTGTCGCAACCCTCGGTCCGGT
* *
15047871 --G-TC-----C-----A-G---TCTG-AT-ATTAGACTGGGAATGAACTCCGTATGCCTAAGTT
582 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * *
15047917 AACCCACGAAATGAGCGTGCAGGCGCTCAGTCAGCCAGAGGGGCGGGATGCGCAAGTCGGGGATC
647 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * * **
15047982 GATCGGATCCCCCTCTACGTGCTACCGATCCTGTTGCTGTAACCCTTGGTCCTATCTGATCTTAG
712 GATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAG
* * *
15048047 ACTGGGAATGAACTCCGTATGCATAGGCCAACCGACGAAACGAGCGGGCGGGGGGACGGGCGGGC
777 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGACGGGCGGGC
*
15048112 ACTACGTCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
842 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * * * *
15048174 AGGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATTGCTTGTAAATTCATACCACGGTT
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * **
15048239 CCTTAAGCCCTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * ** * * * *
15048304 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTTAGAAGAAGTTTTGGCCACAAACCTGGTAGC
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
15048369 CGTGATCCTTGTATTTTTATTGGCATGCACAAAAACATTCGGCTAAAAACTCGAAGTGTATAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* *
15048434 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGGCAGCAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
15048499 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * *
15048564 ATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAAACCCTCCCGGCCCCCCCGAT
391 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGACCCCCCGAT
15048629 CGTCGGAACCCCAATGCCGTCGGTCA--------GGT--T-CTCCGGCGATGGTGCCCCGACGAA
455 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAA
* * *
15048683 GAAAAATAC-AGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCCGGTTC
520 GAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCC
* *
15048747 GATCTTAGACTGGGAAGGAACTCTGTATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAA
584 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
15048812 CCCACGAAACGAGCGTGCGGGTGCTTAGCCGGCCAGAGGGGCGGGATGCGCATGCCGGGGATCGA
649 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * ** * * * * * * * * *
15048877 CCGGGTCCCCCTCTCCGTGCCACCAATCTTGCTACCACAGCCCTTGATCTGGTCCGATCTTAGAT
714 TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGAC
*
15048942 TGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGA--------GT----GGGCGGGCAC
779 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGACGGGCGGGCAC
*
15048995 TACGTCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
844 TACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
15049055 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGTTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
15049120 CCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTTATGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* *
15049185 ACTTTTTGA-GGTTC-AGGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTA
131 ACTTTTT-ACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
15049248 GATGTTATCCTTTTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
194 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
15049313 GATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTCAGACACTTTAATAGCTACTGGCAGCAAAC
259 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
15049378 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
324 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
15049443 CAATGTAAGGGCCAAGTACCAGCACCCATCACACATCCTGTGCGCACA-CCCCCCGGCCCCCCGA
389 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGA
* * * * *
15049507 TCGTCGGAACCCTAATGTCGTCGGTCAGGTTCTCCGGTGACGCTCCGGTGAAGGTGCCCCGACGA
454 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGA
* * * * *
15049572 AGAAAAATGCGACACCAGCACATGCCAGAGCCCAGCATGTGCTGTCGTAACCCTCGATCTGGTCT
519 AGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCC
* * * *
15049637 GATATTAGACTGGGAATGAACTCCGTATGTTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
584 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * ** * *
15049702 CCCACGAAACGAGCGTACGGGTGCTCAGCCAGCCAGTGGAGCGGGATGCATAAGCTGGGGATCGG
649 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * ** * * * * * *
15049767 TCAGGTCCCCCTCTATGTTTTGACGATCCTACTACTGTAACCCTCGATCAGGT-TCGATCTTAGA
714 TCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCT-GATCTTAGA
* ** *
15049831 CTGGGAATGAACTCCGTATGCCTAACCCAACCGACGAAACGAGCGGGC-GGACGAGCTGGCGGGC
778 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGA-CGGGCGGGC
* * *
15049895 ACTACGTCGGCCAGAGAGACAGGATGCGCATGCCATGGATCGATAGGGTGGTAGGTGGGTTT
842 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * * * *
15049957 ACGTACATCTTCATATTTCTGCGTGCCAATACGATTTTTGTGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
15050022 CCTTAAGCCCTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
15050087 ACTTTTTACGGTTCGGGATTTTTAAAAATCTTTTT-GGATGGAGTTTT-GCTCCCAAACTTGGTA
131 ACTTTTTACGGTTCGAGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGC-CCCAAACTTGGTA
*
15050150 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
194 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
15050215 GATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTTTAGACACTTTAATGGCTACTGGCAGCAAA
259 GATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
15050280 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGACGGATAGGGGG
323 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * **
15050345 CCAATATAAGAGCCAAGTACCAGCACCGATCACACATCATGTGCGCACACCCCCCCGACCCCCTA
388 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCG
* * * *** *
15050410 ATCGTCGGAACCCCAACGCCGCCCGTCAGGTTCTCCGACAATGCTTCGGCGATGGTGCCCCGACG
453 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* * * *
15050475 AAGAAAAATACGACACCAGCACATGCCTGAGCCCAGCATGTGCTGTGGCAACCCTCGGTCCAGTC
518 AAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTC
* * * * *
15050540 TGTTCTTAGA-TTGGAATGAACTCCGTATGCTTAGACTGGGAATGAACACCGTATGCCTAAGTCA
583 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
15050604 ACCCACGAAACAAGCGTGCGGGCGCTTAACCGGCCAGAGGGGCGGGATGCACATGCCGGGGATCG
648 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * ** * * *
15050669 GTCGGGTCCCCCTCTGCGTGCCACC-AGTCTTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAG
713 ATCGGGTCCCCCTCTACGTGCTGCCGA-TCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAG
* * * *
15050733 ATTGGGAATGAACTTCGTATGCCTAAGGCAACCGACGAAATGA--------GT--A--GGCGGGC
777 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGACGGGCGGGC
* *
15050786 ACTACGCCGGCCAGAGAGACGGAATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
842 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
** * *
15050848 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTCATAAATTCATAGAATGGTT
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
15050913 CCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTTGTTTTCTATTTTTTACGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* *
15050978 ACTTTTTGA-GGTTC-AGGATTTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTA
131 ACTTTTT-ACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
15051041 GACGTGATCCTTTTATTTTTCTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
194 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
** *
15051106 GATTTTGTGACCATTTGAAAAAAGTGTATCCATTTCAGACACTTTAATAGCTACTGGCAGCAAAC
259 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
15051171 CTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
324 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * ** *
15051236 CAATGTAAGGGCCAAGTACCAGCACCCATCGCACATCCTGTAAGCACA-CCCCTCGACCCCCCGA
389 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGA
* * * * * * * * *
15051300 TCGCCGGAACCCCAATGTCGTCAGTCAGGTTCTCCGGCGACGCTCCAGTGAAGGTACCCCGACGA
454 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGA
* * * ** *
15051365 AGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTAGTCT
519 AGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCC
* * *
15051430 GATATTAGACTGGGAATGAACTCTGTATGTTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
584 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
15051495 CCCACGAAATGAGCGTGCGGGCGCTCAGCCTGCCAGTGGGGCGGAATGCGTAAGCTGGGGA-CTG
649 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC-G
* * * * * * * * * * *
15051559 GTCAGGTCCCCCTCTGCATTCTGACGATCCTGCTGCTGTAACCCTCGATCAGGTCTGATCTTAGA
713 ATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGA
* * * * *
15051624 CTGGGAATGAACTCTGTATGCTTAACCCAACCGACGAAACGAGCGGGCGGAT-GAGCTGGCGGGC
778 CTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGA-CGGGCGGGC
* *
15051688 ACTACGTCTGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
842 ACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
15051750 AGGCACATCTTCATATTTCTGCATGCCAATGCCCTTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * *
15051815 CCTTAAGCCCTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCATGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * *
15051880 ACTTTTTTCGGTTCGGGATTTTTAAAAATTTTTTTGGATGGAGTTTT-GCTCCCAAACTTGGTAG
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC-CCCAAACTTGGTAG
* * *
15051944 ACGTGATGCTTTTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
195 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
15052009 ATTTTGCGACCATTTGAAAAAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACC
260 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
15052074 TGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
325 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
15052139 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCTGAGCCCCCGA
390 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGACCCCCCGA
* * *
15052204 TC-ACTAGAACCCCAATGCCGTCGGTCATGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
454 TCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACG
* * * * * *
15052268 AAGAAAAATGC-ACCACCAGCACATGCCCGAGCCAAGGATATGCTGTTGCAACCCTCGATCTGGT
518 AAGAAAAATGCGA-CACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGT
*
15052332 CCGATCTTAGA-TAGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
582 CCGATCTTAGACT-GGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * * * * *
15052396 CAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGGCAGAGAGGCGGGATACGTAAGTCGGGGAT
646 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * *
15052461 CAATCAGGTCCCCCTCTACGTGCTGTCGATCCTGCTGCCGCAACCCTTGCTCCGGTCGGATCTTA
711 CGATCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTA
** *
15052526 GACTGGGAATGAACTCTTTATGCCTAAGCCAACCTACGAAACGAGCGGGCGGGTGGACGGGCGGG
776 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGACGGGCGGG
* * * *
15052591 CACTACGCCTGCCAGAGAGACAGGATACGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
841 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
15052654 AGGCACATCTTCACATTTCTGC-TGCTAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
15052718 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTACGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * **
15052783 ACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTTGTCTA
131 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
15052848 CCTGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAAATTCAGCTGAAAACTCGAAGTGTACAAG
196 CGTGATCCTTGTATTTTTGTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
*
15052913 ATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCA
260 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
15052949 AATTCTCTTT
Statistics
Matches: 8020, Mismatches: 986, Indels: 377
0.85 0.11 0.04
Matches are distributed among these distances:
854 647 0.08
855 5 0.00
856 47 0.01
857 1 0.00
859 2 0.00
860 1 0.00
862 3 0.00
865 1 0.00
867 194 0.02
868 4 0.00
869 3 0.00
870 34 0.00
871 4 0.00
872 2 0.00
873 2 0.00
874 146 0.02
875 261 0.03
876 67 0.01
877 133 0.02
878 4 0.00
879 39 0.00
880 13 0.00
881 465 0.06
882 2 0.00
883 2 0.00
884 1 0.00
885 7 0.00
886 401 0.05
887 222 0.03
888 54 0.01
889 134 0.02
890 599 0.07
891 326 0.04
892 10 0.00
893 405 0.05
894 70 0.01
895 317 0.04
896 2 0.00
897 102 0.01
898 6 0.00
899 1 0.00
900 1 0.00
901 11 0.00
902 822 0.10
903 800 0.10
904 714 0.09
905 842 0.10
906 86 0.01
907 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (903 bp):
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGACCCCCCGATC
GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGACGAAG
AAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGA
TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
GGGTCCCCCTCTACGTGCTGCCGATCCTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGACGGGCGGGCACTA
CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
Found at i:15048788 original size:26 final size:26
Alignment explanation
Indices: 15048750--15048802 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15048740 CCGGTTCGAT
* *
15048750 CTTAGACTGGGAAGGAACTCTGTATG
1 CTTAGACTAGGAAGGAACTCCGTATG
*
15048776 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAAGGAACTCCGTATG
15048802 C
1 C
15048803 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAAGGAACTCCGTATG
Found at i:15049677 original size:26 final size:26
Alignment explanation
Indices: 15049641--15049691 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15049631 TGGTCTGATA
15049641 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
15049667 TTAGACTGGGAATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
15049692 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:15050583 original size:26 final size:25
Alignment explanation
Indices: 15050544--15050595 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15050534 CCAGTCTGTT
* *
15050544 CTTAGATTGGAATGAACTCCGTATG
1 CTTAGATGGGAATGAACACCGTATG
15050569 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGA-TGGGAATGAACACCGTATG
15050595 C
1 C
15050596 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (25 bp):
CTTAGATGGGAATGAACACCGTATG
Found at i:15052366 original size:26 final size:26
Alignment explanation
Indices: 15052337--15052389 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15052327 CTGGTCCGAT
15052337 CTTAGA-TAGGGAATGAACTCCGTATG
1 CTTAGACT-GGGAATGAACTCCGTATG
15052363 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15052389 C
1 C
15052390 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15052808 original size:904 final size:898
Alignment explanation
Indices: 15047884--15052948 Score: 6846
Period size: 902 Copynumber: 5.6 Consensus size: 898
15047874 CAGTCTGATA
* * * *
15047884 TTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGAAATGAGCGTGCAGGCGCTCAGTC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
*
15047949 AGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGATC-GGATCCCCCTCTACGTGCT-ACCGATC
66 GGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGATCAGG-TCCCCCTCTACGTGCTGA-CGATC
* * * * * * *** * * * *
15048012 CTGTTGCTGTAACCCTTGGTCCTATCTGATCTTAGACTGGGAATGAACTCCGTATGCATAGGCCA
128 CTGCTACCGCAACCCTCGATCAGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCA
* *
15048077 ACCGACGAAACGAGCGGGCGGGGGGACGGGCGGGCACTACGTCGGCCAAAGAGACGGGATGCGCA
193 ACCGACGAAACGAGCGGGC--GGTGACGGGCGGGCACTACGTCGGCCAGAGAGAC-GGATGCGCA
* *
15048142 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACTTGCCAATGCC
255 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
* * * *
15048207 ATTTTTATTGCTTGTAAATTCATACCACGGTTCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGA
320 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGA
* ** *
15048272 TGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
385 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTT
* * * * * *
15048337 TTAGAAGAAGTTTTGGCCACAAACCTGGTAGCCGTGATCCTTGTATTTTTATTGGCATGCACAAA
450 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAA
* * *
15048402 AACATTCGGCTAAAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
15048467 TAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
580 CAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
15048532 GTTCTCGAAGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* *
15048597 TCATGTGCGCAAACCCTCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCA-------
710 TCATGTGCGCACACCC-CCC-GACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
*
15048655 -GGT--T-CTCCGGCGATGGTGCCCCGACGAAGAAAAATAC-AGCACCAGCACATGCCCGAGCCC
773 CGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCCC
* * *
15048715 AGCATGTGCTGTCGCAACCCTC-AGTCCGGT-TCGATCTTAGACTGGGAAGGAACTCTGTATGC
837 AGCATGTGCTGTCGCAACCCTCGA-TCTGGTCT-GATCTTAGACTGGGAATGAACTCCGTATGC
* * *
15048777 TTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTTAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * *
15048842 GGCCAGAGGGGCGGGATGCGCATGCCGGGGATCGACCGGGTCCCCCTCTCCGTGC-CACCAATCT
66 GGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGATCAGGTCCCCCTCTACGTGCTGA-CGATCC
* * * * *
15048906 TGCTACCACAGCCCTTGATCTGGTCCGATCTTAGATTGGGAATGAACT-TCGTATGCCTAAGCCA
129 TGCTACCGCAACCCTCGATCAGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCA
15048970 ACCGACGAAACGA-------GT---GGGCGGGCACTACGTCGGCCAGAGAGACGGAATGCGCAAG
193 ACCGACGAAACGAGCGGGCGGTGACGGGCGGGCACTACGTCGGCCAGAGAGACGG-ATGCGCAAG
15049025 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* * * *
15049090 TTTTATGGCTTGTAAATTCATAGAATGTTCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACG
* * *
15049155 ACTCGTTTTCTATTTTTTATGATTTTTGAAACTTTTTGAGGTTC-AGGATTTTTTAAAATTTTTT
387 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTT
* * * *
15049219 TGGAAAGAGTTTTGGCCCCAAACTTGGTAGATGTTATCCTTTTATTTTTCTTGGCATGCACAAAA
451 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAA
* *
15049284 AAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTC
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
15049349 AGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
581 AGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
15049414 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCACACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* * * *
15049479 CCTGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCTAATGTCGTCGGTCAGGTTCTCCGG
711 CATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * *
15049544 TGACGCTCCGGTGAAGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCAGAGCCCAGCA
776 TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
* * *
15049609 TGTGCTGTCGTAACCCTCGATCTGGTCTGATATTAGACTGGGAATGAACTCCGTATGT
841 TGTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * *
15049667 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTACGGGTGCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * ** * * **
15049732 AGCCAGTGGAGCGGGATGCATAAGCTGGGGATCGGTCAGGTCCCCCTCTATGTTTTGACGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAGC-GGGGATCGATCAGGTCCCCCTCTACGTGCTGACGATCCT
* * * * * *
15049797 ACTACTGTAACCCTCGATCAGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAACCCAAC
130 GCTACCGCAACCCTCGATCAGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
* * *
15049862 CGACGAAACGAGCGGGCGGACGAGCTGGCGGGCACTACGTCGGCCAGAGAGACAGGATGCGCATG
195 CGACGAAACGAGCGGGCGG-TGA-CGGGCGGGCACTACGTCGGCCAGAGAGAC-GGATGCGCAAG
* * * * * *
15049927 CCATGGATCGATAGGGTGGTAGGTGGGTTTACGTACATCTTCATATTTCTGCGTGCCAATACGAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
* *
15049992 TTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGCGAAGTTTCATGGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACG
* * * * * *
15050057 ACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTTAAAAATCTTTTT
387 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT
* *
15050122 GGATGGAGTTTT-GCTCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
452 GGAAGGAGTTTTGGC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAA
* *
15050186 AAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTT
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTT
* *
15050251 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
580 CAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * *
15050316 GTTCTCAAGGTTTGATGACGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCGATCACACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
** * * *
15050381 TCATGTGCGCACACCCCCCCGACCCCCTAATCGTCGGAACCCCAACGCCGCCCGTCAGGTTCTCC
710 TCATGTGCGCACA-CCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCC
*** * * *
15050446 GACAATGCTTCGGCGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCTGAGCCCAG
774 GGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAG
* * ** * *
15050511 CATGTGCTGTGGCAACCCTCGGTCCAGTCTGTTCTTAGA-TTGGAATGAACTCCGTATGC
839 CATGTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
15050570 TTAGACTGGGAATGAACACCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTTAACC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * *
15050635 GGCCAGAGGGGCGGGATGCACATGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGC-CACCAGTCT
66 GGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGATCAGGTCCCCCTCTACGTGCTGACGA-TCC
* * * *
15050699 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGATTGGGAATGAACT-TCGTATGCCTAAGGCA
129 TGCTACCGCAACCCTCGATCAGGTCCGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCA
* *
15050763 ACCGACGAAATGA-------GT-A--GGCGGGCACTACGCCGGCCAGAGAGACGGAATGCGCAAG
193 ACCGACGAAACGAGCGGGCGGTGACGGGCGGGCACTACGTCGGCCAGAGAGACGG-ATGCGCAAG
15050818 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
** * * * *
15050883 TTTTATGGCTCATAAATTCATAGAATGGTTCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACG
* * *
15050948 ACTTGTTTTCTATTTTTTACGATTTTTGAAACTTTTTGAGGTTC-AGGATTTTTTAAAATTTTTT
387 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA-GATTTTTTAAAATTTTTT
* *
15051012 TGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTTCTTGGCATGCACAAAA
451 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAA
* **
15051077 AAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTATCCATTTC
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
15051142 AGACACTTTAATAGCTACTGGCAGCAAACCTGCAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
581 AGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
15051207 TTCTTGAGGTTTGATGAGGGATAGGGGGCCAATGTAAGGGCCAAGTACCAGCACCCATCGCACAT
646 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACAT
* ** * * * *
15051272 CCTGTAAGCACACCCCTCGACCCCCCGATCGCCGGAACCCCAATGTCGTCAGTCAGGTTCTCCGG
711 CATGTGCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGG
* * * * * * *
15051337 CGACGCTCCAGTGAAGGTACCCCGACGAAGAAAAATGCGACACCAGCACATGCTCGAGCCCAGCA
776 TGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCA
* * * * *
15051402 TGTGCTGCCGCAACCCTCGATCTAGTCTGATATTAGACTGGGAATGAACTCTGTATGT
841 TGTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* *
15051460 TTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * * * *
15051525 TGCCAGTGGGGCGGAATGCGTAAGCTGGGGA-CTGGTCAGGTCCCCCTCTGCATTCTGACGATCC
66 GGCCAGAGGGGCGGGATGCGCAAGC-GGGGATC-GATCAGGTCCCCCTCTACGTGCTGACGATCC
* * * * * *
15051589 TGCTGCTGTAACCCTCGATCAGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAACCCAA
129 TGCTACCGCAACCCTCGATCAGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA
* * *
15051654 CCGACGAAACGAGCGGGCGGATGAGCTGGCGGGCACTACGTCTGCCAGAGAGACGGGATGCACAA
194 CCGACGAAACGAGCGGGCGG-TGA-CGGGCGGGCACTACGTCGGCCAGAGAGAC-GGATGCGCAA
*
15051719 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCC
256 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
15051784 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCATGTGAAGTTTCATGGCAAGAC
321 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGAC
* * * * * *
15051849 AACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTTCGGTTCGGGATTTTTAAAAATTTTTT
386 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTT
* * * *
15051914 TGGATGGAGTTTT-GCTCCCAAACTTGGTAGACGTGATGCTTTTATTTTTGTTGGCATGCACAAA
451 TGGAAGGAGTTTTGGC-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAA
* * *
15051978 ACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTC
515 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
15052043 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCCCTTTAAGGGGGTGTGA
580 CAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
15052108 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
645 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACA
* * * *
15052173 TCATGTGCGCACACACCCCCTGAGCCCCCGATC-ACTAGAACCCCAATGCCGTCGGTCATGTTCT
710 TCATGTGCGCACAC-CCCCC-GACCCCCCGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCT
15052237 CCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC-ACCACCAGCACATGCCCGAGCC
772 CCGGTGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGA-CACCAGCACATGCCCGAGCC
* * * * *
15052301 AAGGATATGCTGTTGCAACCCTCGATCTGGTCCGATCTTAGA-TAGGGAATGAACTCCGTATGC
836 CAGCATGTGCTGTCGCAACCCTCGATCTGGTCTGATCTTAGACT-GGGAATGAACTCCGTATGC
*
15052364 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCC
1 TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * * * * *
15052429 GGGCAGAGAGGCGGGATACGTAAGTCGGGGATCAATCAGGTCCCCCTCTACGTGCTGTCGATCCT
66 GGCCAGAGGGGCGGGATGCGCAAG-CGGGGATCGATCAGGTCCCCCTCTACGTGCTGACGATCCT
* * * * * *
15052494 GCTGCCGCAACCCTTGCTCCGGTCGGATCTTAGACTGGGAATGAACTCTTTATGCCTAAGCCAAC
130 GCTACCGCAACCCTCGATCAGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAC
* * * *
15052559 CTACGAAACGAGCGGGCGGGTGGACGGGCGGGCACTACGCCTGCCAGAGAGACAGGATACGCAAG
195 CGACGAAACGAGCGGGC-GGT-GACGGGCGGGCACTACGTCGGCCAGAGAGAC-GGATGCGCAAG
* *
15052624 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGC-TGCTAATGCCAT
257 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
*
15052688 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
322 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACG
* * *
15052753 ACTCGTTTTCTATTTTTTACGATTTTTGAAACTTTTTGCGGTTTGAGATTTTTTAAAATTTTTTC
387 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTT
* ** * * *
15052818 GGAAGGAGTTTTGGCCCCAAACTTTGTCTACCTGATCCTTGTATTTTTTTTGGCATGCAAAAAAA
452 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGC-ACAAAA
* *
15052883 AAATTCAGCTGAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTATCCCCATTTC
516 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
15052948 A
581 A
15052949 AATTCTCTTT
Statistics
Matches: 3659, Mismatches: 437, Indels: 141
0.86 0.10 0.03
Matches are distributed among these distances:
879 34 0.01
880 5 0.00
881 466 0.13
884 1 0.00
887 3 0.00
889 133 0.04
890 591 0.16
891 326 0.09
892 2 0.00
893 172 0.05
894 3 0.00
896 1 0.00
897 2 0.00
898 1 0.00
899 1 0.00
901 4 0.00
902 786 0.21
903 510 0.14
904 612 0.17
905 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
TTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
GGCCAGAGGGGCGGGATGCGCAAGCGGGGATCGATCAGGTCCCCCTCTACGTGCTGACGATCCTG
CTACCGCAACCCTCGATCAGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACC
GACGAAACGAGCGGGCGGTGACGGGCGGGCACTACGTCGGCCAGAGAGACGGATGCGCAAGCCGT
GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTT
ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTC
GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGGAA
GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAATT
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
CTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
GCGCACACCCCCCGACCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATG
CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGC
TGTCGCAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
Found at i:15054082 original size:26 final size:26
Alignment explanation
Indices: 15054053--15054105 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15054043 CTGGTTCGAT
* *
15054053 CTTAGATTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15054079 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15054105 C
1 C
15054106 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15054974 original size:26 final size:26
Alignment explanation
Indices: 15054938--15054988 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15054928 TGGTCTGATA
15054938 TTAGACTGGGAATGAACTCCGTATGT
1 TTAGACTGGGAATGAACTCCGTATGT
*
15054964 TTAGACTGGGAATGAACTTCGTATG
1 TTAGACTGGGAATGAACTCCGTATG
15054989 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.14, G:0.27, T:0.31
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGT
Found at i:15056189 original size:881 final size:869
Alignment explanation
Indices: 15052946--15057049 Score: 4590
Period size: 881 Copynumber: 4.7 Consensus size: 869
15052936 TATCCCCATT
* * *
15052946 TCAAAT-TCTCTTTAAGGGGGTGTGTGTTCTCAAGGTTTGATTAGGGATAGGGGGCCAATATAAG
1 TCAAATGT-TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * * **
15053010 GGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACAACCCCTGGCCCCCCCGATCGTTGGAA
65 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGCCGGAA
* *
15053075 CCCCAATGCCGCCGGTCAGGTTCTC-CG-G-T--GATGGT-G-CCCCGACGAAGAAAAATGCGGC
129 CCCCAATGCCGTCAGTCAGGTTCTCACGAGCTCCGATGGTGGTCCCCGACGAAGAAAAATGCGGC
* * * * * *
15053133 ACCAGCATATGCCCGAACCCAGCATGTGCTGCCGTAACCCTCTG-TCCGGTCT-GATATTAGGCT
194 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GATCCAGTCTCGATCTTAGACT
* *
15053196 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGTTCAGCCAGCCAGA
258 GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGA
* * * * * * * * * **
15053261 GAGGCGGGATGCGCAAGCCGGGGATTGACCGGTTCCCTCTCTGCGTGCTGCCGATCCTGTTGCTG
323 GGGGC-GGATGCGCAAG-CGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACTGATCTTACTG-TG
* * * ** * *
15053326 TAACCCTTGGTCCTATCTGATCTTAGACTGGGAATGAAC-TCTGTATGCGTAAGCCAACTGACGA
385 CAACCCTCGAT-CGGTCTGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGA
* * * * *
15053390 AACGAGCG--GGCGGGGGGGCGGGCAGGCACTACGCCGGCCAGAGAGACGAGATGCGTAAGCCGT
448 AACGAGCGACGGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGT
15053453 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
513 GGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTT
* * *
15053518 ATGGCTAGTAAATTCATACAACGGTCCCTTAAGCCCTCACGTGAAGTTCCATGGCAAGACGACTC
578 ATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTC
* * ** *
15053583 GTTTTCTATTTTTCTCGATTTTC-AAAATTTTTTGCGGTTCGGGATTTTTTAAAATTATTTCAG-
643 GTTTTCTATTTTTCACGATTTTCGAAACTTTTTAACGGTTCGGGA-TTTTTAAAATTTTTTCAGA
* * * * *
15053646 AAGAAGCTTTGGCCACAAACCTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAA
707 AAG-AG-TTTTGCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
*
15053711 TTCGGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCTAGA
770 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT-TAGA
* *
15053776 CACATTAATGGCTACTGGTAGCAAACCTGTAAAATC
834 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
15053812 TCAAATGCTCTTTAAGGGGGTGTAAGTTCTCGAGGTTTGATGACGGATAGGGGGCCAATATAAGG
1 TCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
15053877 GCCAAGTAACAGCACCCATCGCACATCATGTGCGCAAACCCCCCGGCCCCCCGATCGCCGGAACT
66 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACC
* * * *
15053942 GCAATACCGTCAGTCAGGTTCTC-CG-G---CGATGGT-G-CCCCGACGAAGAAAAATACAGCAC
131 CCAATGCCGTCAGTCAGGTTCTCACGAGCTCCGATGGTGGTCCCCGACGAAGAAAAATGCGGCAC
* * *
15054000 CAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAACCCTCGGTCTGGTTCGATCTTAGATTGGGA
196 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA--C-C---C----TCGATC---CA----G-
*
15054065 ATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCG
243 -T---C-TCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCG
* * * *
15054130 TGCAGGCGCTTAACCGGCCAGAGGGGCTGGATGCGCAAGCCGGGATCGGTTGGGTCCCCCTCTGC
301 TGCAGGCGCTCAGCCGGCCAGAGGGGC-GGATGCGCAAGCGGGGATCGGCTGGGTCCCCCTCTGC
* ** * * * * *
15054195 ATGCCGCGGATCCTT-CTACTGCAGCCCTCGGTCCGGTCTGATCTTAGACTGGGAATAAACTTCG
365 GTGCTACTGAT-CTTACT-GTGCAACCCTCGAT-CGGTCTGATCTTAGACTGGGAATGAACTTCG
* *
15054259 TATGCCTAAGCCAACCGATG-AA--A-C-A---------AGTGGGCGGGCACTACGCCGGCCAGA
427 TATGCCTAAGCCAACCGACGAAACGAGCGACGGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGA
* * **
15054310 GAGATGGAATGCGCAAGCCGTGGATCGATAGGGTGGTTTGTGGGTTTAGGCACATCTTCATATTT
492 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* * * *
15054375 CTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGGTCCCTTAAGCCTTCACGTGA
557 CTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGA
* * * * *
15054440 AGTTTAATGGCAAGACGACTAGTTTTCTATTTTTTACGATTTGT-GAAACTTTTTGA-GGTTCAG
622 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT-TCGAAACTTTTTAACGGTTCGG
** * *
15054503 GATTTTTAAAATTTTTTTGGAAAGAGTTTTGGCCCCAAACTTGGTAG-TGTTATCCTTTTATTTT
686 GATTTTTAAAATTTTTTCAGAAAGAGTTTT-GCCCCAAACTTGGTAGATGTGATCCTTGTATTTT
* * * **
15054567 TCTTGGCATGCACAGAAAAATTCGGCTAAAAACTTAAAGTGTACAAGATTTTGTGACCATTTGAA
750 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
15054632 AAAAGTGTCTCCATTTAGACAC-TTAATAGCTACTGGCAGCAAACCTGTAAACTC
815 AAAAGTGTCCCCATTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
15054686 TCAAATGCTT-TTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGAGATAGGGGGCCAATGTAAG
1 TCAAATG-TTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
15054750 GGCCAAGTACCAGCACCCATCGCACATCCTGTGCACACA-CCCCCTGCCCCCCGATCGCCGGAAC
65 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAAC
* * * * * * * **
15054814 CCCAATGTCGCCGGTCAAGTTCTCCGATGACGCTCTGGTGAAGGTGCCCCGACGAAGAAAAATGC
130 CCCAATGCCGTCAGTCAGGTTCT-C-ACGA-GCTCCGATGGTGGT-CCCCGACGAAGAAAAATGC
* * * *
15054879 GGCACCAACACATGCCAGAGGCCAACATGTGCTGCCGCAACCCTCGATCTGGTCTGATATTAGAC
191 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATC----C---------A-
* *
15054944 TGGGAATGAACTCCGTATGTTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAAC
242 ---G--T---CT-CG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * *
15055009 GAGCGTGCAGGCGCTCAGCCGGCTAGTGGGGCGGAATGCGTAAGCTGGGGATCGG-TCAGGTCCC
296 GAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGG-ATGCGCAAGC-GGGGATCGGCT-GGGTCCC
* * * * * *
15055073 CCTCTGTGTTCTGAC-GATCCTACTACTGTAACCCTCGATCAGGTTTGATCTTAGACTGGGAATG
358 CCTCTGCGTGCT-ACTGATCTTACT-GTGCAACCCTCGATC-GGTCTGATCTTAGACTGGGAATG
* * * *
15055137 AAC-TCTGTATGCCTAACCCAACCGATGAAACGAGCG--GGCGGACGAGCTGGCGGGCACTACGC
420 AACTTC-GTATGCCTAAGCCAACCGACGAAACGAGCGACGGCGGGCGAGCGGGCGGGCACTACGC
15055199 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
484 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
* *
15055264 TCATATTTC-AGCGTGCCAATGTCATTTTTGTGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
549 TCATATTTCTA-CGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * * *
15055328 CTCACGCGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTT-A
613 CTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAA
* ** **
15055392 CGTTTCGGGATTTTTAAAACTTTTTTTGGATGGAGTTTTGCTCCCAAACTTGGTAGATGTGATCC
678 CGGTTCGGGATTTTTAAAA-TTTTTTCAGAAAGAGTTTTGC-CCCAAACTTGGTAGATGTGATCC
*
15055457 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTATGA
741 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
15055522 CCATTTGAAAAAGGTGTCCCCATTTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
806 CCATTTGAAAAAAGTGTCCCCA-TTT-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
15055587 C
869 C
*
15055588 TCAAATGTTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
1 TCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
15055653 GCCAAGAACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACC
66 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACC
* * * ** * *
15055718 CCAATGCCGTCAGTAAGGTTCTCCAACGATGCTCCGGTGGTGGTTCTCCGGTGAAGAAAAATACA
131 CCAATGCCGTCAGTCAGGTTCT-C-ACGA-GCTCCGATGGTGG-TCCCCGACGAAGAAAAATGCG
* * * *
15055783 ACACCAGCACATGCCCGAGGCCAGCATTTTGCTGCCGCAATCCTCGATCCAGTCT-GATCTTAGA
192 GCACCAGCACATGCCCGAGCCCAGCA-TGTGCTGCCGCAACCCTCGATCCAGTCTCGATCTTAGA
* * * * * *
15055847 CTGGGAATGAACTCTGTATGCCTAAGTCAAACCACAAAACGAACGTGC-GACGCTCAGCCGGCTA
256 CTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCA
* * *
15055911 GAGGGGCGAGATGCACAAGTCGAGGATCGGCTGGGTCCCCCTCTACGTGCTACTGATCTTACTGT
321 GAGGGGCG-GATGCGCAAG-CGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACTGATCTTACTGT
*
15055976 AGCAACCCTCGATCGGATCTAATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACG
384 -GCAACCCTCGATCGG-TCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACG
* * *
15056041 AAATGAGCGGACGGGCGGGCGAGCGGGCGAGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGC
447 AAACGAGC-GAC-GGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
15056106 CGTGGATCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATT
510 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATT
* *
15056171 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATACGA
575 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGA
* * * * *
15056236 TTCGTTTTCTATTTTTCACAATTTTCCAAACTTTTTAA-GGTTTGGGATTTTTTAAACTTTTTTC
640 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAACGGTTCGGGA-TTTTTAAAATTTTTTC
* ** *
15056300 AGAAAGATTTTTGTCCCCAAACTTCATAGATGTGATCCTTGTATTTTTGTTGGCATGTACAAAAA
704 AGAAAGAGTTTTG-CCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * *
15056365 AATTCAGCTAAAAGA-TTGAAGTGTACAAGATTTTGTGTCCATTTGAAAAAAGGGTCCCCATTTC
768 AATTCAGCTAAAA-ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT-
* *
15056429 ATACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATC
831 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * *
15056468 TCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATGGGGGGCCAATATAAGG
1 TCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * **
15056533 GCCAAGTACCAGCACCCATCACTA-ATTATGTGCGCACACCGCCCGGCCCCCTCGATCGCTAGAA
66 GCCAAGTACCAGCACCCATCGC-ACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGCCGGAA
* * **
15056597 CCCCAAT-CCGTC-GATCAGGTTCTACGACGATGCTCCGACGATGGTGCCCCGGTGAAGAAAAAT
129 CCCCAATGCCGTCAG-TCAGGTTCT-C-ACGA-GCTCCGATGGTGGT-CCCCGACGAAGAAAAAT
* * * * * * * *
15056660 GTGGCAGCAGCATATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTTGGTCCGGT-TCGATCTTA
189 GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCTCGATCTTA
* * * *
15056724 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTACGGGTGCTCAGCCGGC
254 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGC
*
15056789 CAGAGGGGCGGGATGCGCAAGCTGGGGATCGGCTGGGTCCCCCTCTGCGTGCT-GTCGATCTTAC
319 CAGAGGGGC-GGATGCGCAAGC-GGGGATCGGCTGGGTCCCCCTCTGCGTGCTACT-GATCTTAC
* **
15056853 TGCTGCAACCATC-AGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAATT
381 TG-TGCAACCCTCGA-TC-GGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACC
* * * * * * *
15056917 GAAGAAACGAGC-A-GGCGAGC-AGGTGGGTGGGCACTATGCCGGCCAGAGAGATGGGATGCGCT
443 GACGAAACGAGCGACGGCGGGCGA-GCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCA
*
15056979 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCGATGCC
507 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
15057044 ATTTTT
572 ATTTTT
15057050 CTGGTTTGGG
Statistics
Matches: 2776, Mismatches: 340, Indels: 234
0.83 0.10 0.07
Matches are distributed among these distances:
865 99 0.04
866 99 0.04
867 1 0.00
868 1 0.00
871 1 0.00
873 40 0.01
874 128 0.05
875 13 0.00
876 205 0.07
877 151 0.05
878 247 0.09
879 87 0.03
880 342 0.12
881 346 0.12
882 17 0.01
883 3 0.00
884 156 0.06
885 84 0.03
886 4 0.00
887 3 0.00
888 2 0.00
889 4 0.00
890 83 0.03
891 86 0.03
896 2 0.00
897 207 0.07
898 31 0.01
899 85 0.03
900 4 0.00
901 8 0.00
902 123 0.04
903 93 0.03
904 21 0.01
ACGTcount: A:0.25, C:0.24, G:0.26, T:0.26
Consensus pattern (869 bp):
TCAAATGTTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACC
CCAATGCCGTCAGTCAGGTTCTCACGAGCTCCGATGGTGGTCCCCGACGAAGAAAAATGCGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCTCGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGG
GCGGATGCGCAAGCGGGGATCGGCTGGGTCCCCCTCTGCGTGCTACTGATCTTACTGTGCAACCC
TCGATCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCG
ACGGCGGGCGAGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTCGAAACTTTTTAACGGTTCGGGATTTTTAAAATTTTTTCAGAAAGAGTTTT
GCCCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAA
ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAGACACTTTAATGGC
TACTGGCAGCAAACCTGTAAAATC
Found at i:15057848 original size:159 final size:157
Alignment explanation
Indices: 15057527--15057893 Score: 500
Period size: 159 Copynumber: 2.3 Consensus size: 157
15057517 ACTCCGCATG
*
15057527 CTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTAT-GCTAAGTCAACCAACGAAACGAGCGTGCAGGCGCTCAGC
* * *
15057592 AGGCCAAAAGGGCGGATGCGCAAGTCGGGGATCGACCGGGACCTCCTCTGTGTGCTACCGATCCT
65 AGGCCAAAAGGGCGGATGCGCAAGCCGGGGATCGACCGGGACCCCCTCTGCGTGCTACCGATCCT
* * * *
15057657 GCTGTCATAACCCTCGGTCTGGTCTGAT
130 GCTGTCACAACCCTCAGTCCGGTCCGAT
* * * *
15057685 CTTAGATTGGGAATGAACTCCGTATGCTTAAGTCAACCAACGAAATGAGCGTGCGGGCGCTCATC
1 CTTAGACTGGGAATGAACTCCGTATGC-TAAGTCAACCAACGAAACGAGCGTGCAGGCGCTCAGC
* * * * *
15057750 CGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCC
65 AGGCCAAAAGGG-CGGATGCGCAAGCCGGGGATCGACCGGGACCCCCTCTGCGTGCTACCGATCC
* *
15057815 TGTTGTCACAACCTTCAGTCCGGTCCGAT
129 TGCTGTCACAACCCTCAGTCCGGTCCGAT
* * *
15057844 CTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGC
1 CTTAGACTGGGAATGAACTCCGTATG-CTAAGTCAACCAACGAAACGAGC
15057894 AGGCGGACGT
Statistics
Matches: 182, Mismatches: 24, Indels: 5
0.86 0.11 0.02
Matches are distributed among these distances:
157 2 0.01
158 66 0.36
159 113 0.62
160 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.29, T:0.19
Consensus pattern (157 bp):
CTTAGACTGGGAATGAACTCCGTATGCTAAGTCAACCAACGAAACGAGCGTGCAGGCGCTCAGCA
GGCCAAAAGGGCGGATGCGCAAGCCGGGGATCGACCGGGACCCCCTCTGCGTGCTACCGATCCTG
CTGTCACAACCCTCAGTCCGGTCCGAT
Found at i:15058612 original size:26 final size:28
Alignment explanation
Indices: 15058565--15058636 Score: 112
Period size: 26 Copynumber: 2.6 Consensus size: 28
15058555 TCCGGTCTGA
*
15058565 TCTTAGACTCGGGAATGAAACTCTGTAT
1 TCTTAGACTAGGGAATGAAACTCTGTAT
15058593 TCTTAGACT-GGGAATG-AACTCTGTAT
1 TCTTAGACTAGGGAATGAAACTCTGTAT
15058619 TCTTAGACTAAGGGAATG
1 TCTTAGACT-AGGGAATG
15058637 GAATCTCCGT
Statistics
Matches: 42, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
26 19 0.45
27 7 0.17
28 16 0.38
ACGTcount: A:0.29, C:0.15, G:0.24, T:0.32
Consensus pattern (28 bp):
TCTTAGACTAGGGAATGAAACTCTGTAT
Found at i:15062021 original size:26 final size:26
Alignment explanation
Indices: 15061992--15062044 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15061982 CCATTCCGAT
*
15061992 CTTAGATTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
15062018 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
15062044 C
1 C
15062045 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:15062896 original size:27 final size:25
Alignment explanation
Indices: 15062866--15062918 Score: 79
Period size: 25 Copynumber: 2.0 Consensus size: 25
15062856 CAGGTCCGAT
15062866 CTTAGACTGGGAATGAAACTCCGTATG
1 CTTAGACT-GGAATG-AACTCCGTATG
*
15062893 CTTAGACTGGAATGAATTCCGTATG
1 CTTAGACTGGAATGAACTCCGTATG
15062918 C
1 C
15062919 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 11 0.44
26 6 0.24
27 8 0.32
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (25 bp):
CTTAGACTGGAATGAACTCCGTATG
Found at i:15063789 original size:26 final size:27
Alignment explanation
Indices: 15063751--15063805 Score: 85
Period size: 26 Copynumber: 2.1 Consensus size: 27
15063741 CCGGTCCGAT
15063751 CTTAGACTAGGAAT-GAACTCCATATG
1 CTTAGACTAGGAATAGAACTCCATATG
* *
15063777 CTTAGACTGGGAATAGAACTCCGTATG
1 CTTAGACTAGGAATAGAACTCCATATG
15063804 CT
1 CT
15063806 AAGTCAACCC
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
26 13 0.50
27 13 0.50
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (27 bp):
CTTAGACTAGGAATAGAACTCCATATG
Found at i:15064676 original size:26 final size:26
Alignment explanation
Indices: 15064640--15064692 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15064630 CTGGTTTGAT
*
15064640 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
15064666 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
15064692 C
1 C
15064693 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:15066434 original size:26 final size:26
Alignment explanation
Indices: 15066405--15066457 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15066395 CCGGTCGGAT
15066405 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15066431 CTTAGACTGGGAATGAAGTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15066457 C
1 C
15066458 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15066542 original size:26 final size:26
Alignment explanation
Indices: 15066513--15066565 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15066503 GCGGTTCGAT
* *
15066513 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
15066539 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
15066565 C
1 C
15066566 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:15068469 original size:26 final size:26
Alignment explanation
Indices: 15068431--15068483 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15068421 CCGGTTCGAT
*
15068431 CTTAGACTGGGAATGAACTTCT-TATG
1 CTTAGACTAGGAATGAA-TTCTGTATG
15068457 CTTAGACTAGGAATGAATTCTGTATG
1 CTTAGACTAGGAATGAATTCTGTATG
15068483 C
1 C
15068484 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTAGGAATGAATTCTGTATG
Found at i:15069372 original size:26 final size:26
Alignment explanation
Indices: 15069336--15069385 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15069326 GTCTGATCTA
15069336 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
15069362 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
15069386 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:15069714 original size:901 final size:896
Alignment explanation
Indices: 15067536--15076306 Score: 10387
Period size: 901 Copynumber: 9.8 Consensus size: 896
15067526 ATTATTTCAC
* * * *
15067536 CTGGGAATGAACTCCGTATACTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * * * * *
15067601 CAAGCGTGCAGGCGCTCAACCAGCCAGAGGGGCGGGATGAGCGAGCCGGGGATCGGTCGAGTGCC
66 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCC
* * * ** * * **
15067666 CCTCTGCGTGCTATCAATTCTGTTGCCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGA
131 CCTCTGCGTGCTGTCGATCCTGCAGCCGTAACCCTCAGTCCAGT-TGATCTTAGACTGGGAATGA
* * * * * *
15067731 ACTCCGTATGCCTAAGCCAACCGACAAAATGAGTGGGCGGGCAGGCAGGCACTACGTCGACCAGA
195 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGA
* *
15067796 GAGACAGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
260 GAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTT
* *
15067861 TTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGCCC-TAAGCCTTCACGTG
325 CTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGTG
** * * *
15067925 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTAAACGATTTTCAAAACTTTTTACGGTTTGGG
389 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGG
* **
15067990 ATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGAGCCAAACTTGGTAGACGTGATCCTTGTATTTT
454 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
* **
15068055 TTTTTTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
519 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* *
15068120 AAAAGT-ACCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGC
584 AAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGC
* *
15068184 TCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
648 TCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA
* * * * *
15068249 CCAGCACCTATCGCACATCATGTGCGCACACACCCCCCGATCACCCCGATCGCCGGAGCCCCAAT
713 CCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCG-GCCCCCCGATCGTCGGAACCCCAAT
* * * * * * * *
15068314 GCTGTCGGTTAGCTTCTTCAACGATGCTCCGGTGATGGTGCCCCGGCGAAGAAAAATACAGCAGC
776 GCCGTCGGTCAGGTTC-TCGACGATGCT-CGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* * * *
15068379 AGCACATGCCCAAGCCCAGCATGTGCTGCCGCAATCGTCGGTCCGGTTCGATCTTAGA
839 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * * * *
15068437 CTGGGAATGAACTTCTTATGCTTAGACTAGGAATGAATTCTGTATGCCTAAGTCAACCCACGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
15068502 TGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCAGGTCCC
66 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCC
* * * * * * * * * **
15068567 CCTCTACGTCCTGTCAATCCTACTA-TCATAACCCT-TGTTCTGATCCAATCTTAGACTGGGAAT
131 CCTCTGCGTGCTGTCGATCCTGC-AGCCGTAACCCTCAGTCCAG-T-TGATCTTAGACTGGGAAT
* **
15068630 GAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGATGGGCGGATGGGCACTACGTCG
193 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----GGGCGGGCGGGCACTACGTCG
* * *
15068695 GCCAGAGAGACGGGAT-CACAA-CTGTGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTA
254 GCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
* * *
15068757 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTG
319 ATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
** * *
15068822 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCTTGATTTTTAAAACTTTTTACGAT
384 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGT
*** * * * ** *
15068887 TTTAGATTTTTT-AATTTTTTTTGGAAGGATTTTTGGCCATAAAGTTGGTAGACGTGATCCTTGT
449 TCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* *
15068951 ATTTTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCAT
514 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
* * *
15069016 TTGAAAAAAGTGTCCCCATTTCTGACACTTTAATCGCTACTGACAGCAAACCTGTAAAATCTCAA
579 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
*
15069081 ATGCTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
644 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * * *
15069146 TGTAACAGCACCCATCGCACATCATGTGCGCACAACCCCCCTCGACCACCCCTATCGTCGGAACC
709 AGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCC-CGGCC-CCCCGATCGTCGGAACC
* ** * * * *
15069211 CCAATGCCGCCGGTCAGGTTCTCGGGTGATACTCTAGCGATGGTGCCCCGGTGAAGAAAAATGCA
771 CCAATGCCGTCGGTCAGGTTCTC-GACGATGCTC-GGCGATGGTGCCCCGGCGAAGAAAAATGCG
* * * ** * * * * *
15069276 ACACCAACACATGCCTGAGCCCTTCTTGTGCTGCCGCAACCCTCGATCTGGTCTGATCTAAGA
834 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
15069339 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * *
15069404 TGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCG-GCTGGGTCC
66 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATC-GGGTCC
* * * * * ** * *
15069468 CTCTTTGCATGCTGTCAATCCTGCAGTCACAACCCTCGGTTCAGTTGAATCTTAGACTGGGAATG
130 CCCTCTGCGTGCTGTCGATCCTGCAGCCGTAACCCTCAGTCCAGTTG-ATCTTAGACTGGGAATG
* * * * *
15069533 AACTCCGTACGTCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGACCAG
194 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAG
* *
15069598 AGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATT
259 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
* * * *
15069663 TCTGTGTGCGAATGCCATTTTTTTGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTG
324 TCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTG
* * * * *
15069728 AAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTCTGCAGTTCGGG
389 AAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGG
* * *
15069793 ATTTTTTAAAATTTTTTCGAAAGGATTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTT
454 ATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTT
** ** * ** *
15069858 TGTTGGGGTGTGC-AAAAAATTCAGCTAAAAACTCAAAGCCTACAAGATTTTTTGACCATTTGAA
519 TGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
*
15069922 AAAGGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
584 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCT
* * * ** *
15069986 CTTTAAGGGGGTGTGATTTCTTGAGGTTTGATGAGGGATAGTGGTTCAATATAAAGGCCAAGTAC
649 CTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTAC
** * * * * *
15070051 CAAAACCCATCACACATCATTTGCGCACA-CCCCCCGGCCCCCTCGATCTTCGAAATCCCAATGC
714 CAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-CGATCGTCGGAACCCCAATGC
**
15070115 CGTCGGTCAGGTTCTC--C-A------GCGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCA
778 CGTCGGTCAGGTTCTCGACGATGCTCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCA
** * * * * * **
15070171 CATGCTTGAGCCTAGCATGTGCTGTCGTAACCCTCGATCCTGTTTGATCTTAGA
843 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * *
15070225 C-GGAGAATGAACTCCATATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
1 CTGG-GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * * * *
15070289 ACAAACGTGCGGGCGCTCAACCGACTAAAGGGGCGGGATGCACAAGCCGAGGATCGATCGGGTCC
65 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCC
* ** ** * * * *
15070354 CCCTCTACGTGCTACCGATCCTGCTA-CCACAACCTTCGGT-CAGGTTTGATTTTTGACTGGGAA
130 CCCTCTGCGTGCTGTCGATCCTGC-AGCCGTAACCCTCAGTCCA-G-TTGATCTTAGACTGGGAA
* * * * **
15070417 TGAACTTCGTATGCCTAAGCCAACCGATGAAA-TA-------AGCGGGCGGGCACTACACCGGCC
192 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCC
* * * *
15070474 AGAGAGATGGGATGCGCAAGCCGTGTATCGATATGGTGGCAGGTGGGTTTAGGCACATCTTCATA
257 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* * *
15070539 TTTCTGTGAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACG
322 TTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * *
15070604 TGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCA
387 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCG
* * * *
15070669 AGATTTTTTAAAATTTTTTCGTATGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATT
452 GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
* * ** *
15070734 TTTTTTGGCATGCTCAAAAAAAATTCAGCT-GCAACTCAAAGTGTACAAGATTTTGTGACCATTT
517 TTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
15070798 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCACCGAACCTGTAAAATCTCAAAT
581 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* *
15070863 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAGGGATAGGGGGCCAATATAAAGGCCAAG
646 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
* * * ** *
15070928 TACCAGCACCCATCGTACATCATGTGCGCAC-CCCCTCGGGCCCCCCGATCACCGGAGCCCCAAT
711 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAAT
* * * * * ** *
15070992 GTCATCGGTCTGGTTCTTCGACGATGGTCCGGCGATGGTGCCTCAACGAAGAAAAATGCGCCACC
776 GCCGTCGGTCAGGTTC-TCGACGATGCT-CGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACC
* * *
15071057 AGCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGA
839 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* *
15071115 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * *
15071180 CGAGCGTGCGGGTGCTCAACCGGCCAGAGGGGCGGGAAGCGCAGGTC-AGGGATCGATCGGGTCC
66 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGATCGGGTCC
* * * * *
15071244 CCTTCTGCGTGCTGTTGATCCTACTA-CCGTAACCCTCAATCCGGTCTGATCTTAGACTGGGAAT
130 CCCTCTGCGTGCTGTCGATCCTGC-AGCCGTAACCCTCAGTCCAGT-TGATCTTAGACTGGGAAT
* *
15071308 GAACTCCGTATGCCTAAGACAACCGATGAAACGA----GCGGGCGGGCGGGCACTACGAT-GG-C
193 GAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACG-TCGGCC
*
15071367 AGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATA
257 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
*
15071432 TTTCTACGTGCCAATGCCATTTTT-TAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
322 TTTCTGCGTGCCAATGCCATTTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* *
15071496 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGATTC
386 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTC
* * * * *
15071561 GGGATTTTTTAAAATTTTTTTGGAAGCATTTTTGGCCCCAAACTTGGTAGACTTTATCCTTGTAT
451 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * * * *
15071626 TTATGTTGGCCTGCACACAAAAATTTAGTTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTT
516 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
15071691 GAAAAAAGTTTCCCCATTGCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAAT
581 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* **
15071756 GCGCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTGAATATAAGGGCCAAG
646 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
*
15071821 TACCAGCACCCATCGCAAATCATGTGCGCACACCCCCCTCGGCCCCCCGATCG-CTGGAACCCCA
711 TACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CGGCCCCCCGATCGTC-GGAACCCCA
* * * * * *
15071885 ATGTCG-CTGGTCAGGTTCTTCGATGATGCTCCGGCGATGGAGCCTCGACGAAGAAAAATGTGGC
774 ATGCCGTC-GGTCAGGTTC-TCGACGATGCT-CGGCGATGGTGCCCCGGCGAAGAAAAATGCGGC
* ** * * *
15071949 ACCAGCACATGCTCGAGAACAGCATGTGCTGCGGCAACCCTTGGTCTGGTCCGATCTTAGA
836 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * * * * * * * *
15072010 CTAGGAATGAACTCCGTATGCCTAAGTCAACCCAT-GAAAAGAGCGTGCG--GGCGCTCAG-CAG
1 CTGGGAATGAACTCCGTATG-CTTAG---A--C-TGGGAATGAAC-TCCGTATGC-CTAAGTCAA
* * * * * * *
15072071 GCCA-G--A-G-G-G-GCGGGATGCGCAAGCCGG--GGATCGGGCGGGATGCACAAGCTGAGGAT
57 CCCACGAAACGAGCGTGCGGG-CGCTC-AGCCGGCCAGA-GGGGCGGGATGCGCAAGCCGAGGAT
* ** * * * *
15072127 CGGTCGGGTCCCCCTCCACGTGCTGTCGATCCTGCTGTCGCAACCCTC-GATCC-GATCTGATGT
119 CGATCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCAGCCGTAACCCTCAG-TCCAG-T-TGATCT
* * * *
15072190 AAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGGCGGGCGAGCGGGCA
181 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCA
* *
15072255 CTACGTCGGCCAGGGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTTTAGGC
246 CTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* * * *
15072320 ACATCTTCATATTTCTACATGCGAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTT
311 ACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* *
15072385 AAGCCTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTT
376 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTT
* * *
15072450 TTTGTGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTTGTAGACGTG
441 TTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG
*
15072515 ATCCTTGTATTTTT-TTGGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTT
506 ATCCTTGTATTTTTGTT-GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
* * *
15072579 TGTTACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTA
570 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
15072644 AAATCTCAAATGCTCTCTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATA
635 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
*
15072709 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGCC
700 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTC
* * * * * * *
15072774 GGAACCCCAATGCTGCCGGTCAAGTTCTCCGGCGATACTCCGGCGATGGTGCCCCGACAAAGAAA
765 GGAACCCCAATGCCGTCGGTCAGGTTCT-CGACGATGCT-CGGCGATGGTGCCCCGGCGAAGAAA
* * * * *
15072839 AATGCGGCACCAGGAAATG-CCGTAGCCCAGCATGTGCTACCACAACCCTCGGTCCGGTACGATC
828 AATGCGGCACCAGCACATGCCCG-AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
*
15072903 TTAGG
892 TTAGA
* * * * * *
15072908 CTGGAAACGAACTCTGTATGCTTAGATTGGGAATGAATTCCGTATGCCTAAGTCAACCCACAAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
15072973 CGAGCGTACGGTCGCTCAGTCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGTTCGGGTCCA
66 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCC
* * ** * * *
15073038 TCTCTACGTGCTG-CTGATCCTGTTGCCGTAACCCTCAGCCCAGTCTGATCCTCGACTGGGAATG
131 CCTCTGCGTGCTGTC-GATCCTGCAGCCGTAACCCTCAGTCCAGT-TGATCTTAGACTGGGAATG
* * *
15073102 AACTCCATATGCCTAAGCCAACCGATGAAACGTGTGGGCGGGCGGGCGGGTGGGCGGGCACTACG
194 AACTCCGTATGCCTAAGCCAACCGACGAAAC----GAGCGGGCGGGC----GGGCGGGCACTACG
* * * *
15073167 TCGGCCAGAAAGATGGGATGCGCAAGCCGTCGATCGATAGGGTGGTAGGTGGGTTTTGGCACATC
251 TCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATC
* ** *
15073232 TTCATATTTCTGCATTTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGCCTTAAGCC
316 TTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCC
* * *
15073297 TTCATGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTGC
381 TTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGC
* * * *
15073362 GGTTC-AGATTTTTTAAAATTTCTTT-GGAAGGAGTTTTGGCCCTAAACTTGCTAGAGGTGATCC
446 GGTTCGGGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
15073425 TTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAAAGTCAAAGTGTACAAGATTTTTTGA
510 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* *
15073490 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGGAAACCTGTAAAATC
575 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* *
15073555 TCAAATGCTTTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
640 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
15073620 GCTATGTACCAGCACCCATCGCACATCATGTGCACACA-CCCCCCGGTCCCCCCGATCGTCGGAA
705 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAA
*
15073684 CCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTC--C-A----------GCGAAGAAAAATGC
769 CCCCAATGCCGTCGGTCAGGTTCT-CGACGATGCTCGGCGATGGTGCCCCGGCGAAGAAAAATGC
* * * * *
15073736 GGCACCCGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGATCCGATCCGGTCTTAGA
833 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * * *
15073800 CTAGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCCCGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * *
15073865 CAAGCGTGCAGGCGCTCAGCAGGCCAGAGGGGCGGGATGCGCAAGTCGAGGATCGATCGGGTCCC
66 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGT-CC
* * *
15073930 TCCCTCCCTGCATGCTGCCGATCCTGCTGCCGTAACCCTCTA-TCCAGTTTGATCTTAGACTGGG
130 -CCCT--CTGCGTGCTGTCGATCCTGCAGCCGTAACCCTC-AGTCCAG-TTGATCTTAGACTGGG
* *
15073994 AATGAACTCCATATGCCTAAGCCAACCGACGAAACAAGCGGGCAGGCAGGCGGGCGGGCGGGCGA
190 AATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-----C--G-A-GCGGGCGGGCGGGCGG
* * * ** *
15074059 GCACTGCGCCAGCCAGAGAGGTGGGATGCGCAAGCCGTGGATCGATAGGGTGATAGGTGGGTTTA
243 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* ** * *
15074124 GGCATATCTTCATATTTCTATGTGCCAATGCCATTTTAATGGCTTGTAAATTCCTACAATGGTCC
308 GGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * ** * * *
15074189 TTTAAGCCTTCACGTAAAGTTTCATAACAAGACGACTCGTTTTCTATTTTTCATGATTCTTGAAA
373 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAA
** *
15074254 CTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAGTTGGTAGAC
438 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* * * *
15074319 GGGATCCTTGTATTTTTGTTGGCATGCACAAAAAAAGTCAGCTAAAAAATTGAAGTGTACAAGA-
503 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
15074383 TTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACATTTTAATGGCTACTGGCAGCAAACCTG
568 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* *
15074448 TAAAATCTCAAATGGTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAA
633 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
15074513 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC---C-
698 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCG
* * ** * *
15074573 -C-G-------ATGCCGCCGGTTAGGTTCTCCGACGATGCTCCGATGATGGTACCCCTGCGAAGA
763 TCGGAACCCCAATGCCGTCGGTCAGGTTCT-CGACGATGCT-CGGCGATGGTGCCCCGGCGAAGA
* * * * * *
15074629 AAAATGCAGCACCAGCACTTGCCCGAGCCCAACATGTGCTGTCGCAACCCTCGGTCTGATCCGAT
826 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
*
15074694 CTTACA
891 CTTAGA
* * * *
15074700 TTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATATGCCTATGTTAACCCACGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
15074765 TGAGCGTGCGGGCTCTCAGCCGGCCAGAGGGGTGGGATGCGTAAGCCGGGGATCGGTCAGGTCCC
66 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCC
* ** * * ** *
15074830 CCTCTGCGTGCTGCCGATCCTGTTGCCGTAACCCTCTGTCCGGTCCAATATTAGACTGGGAATGA
131 CCTCTGCGTGCTGTCGATCCTGCAGCCGTAACCCTCAGTCCAGT-TGATCTTAGACTGGGAATGA
*
15074895 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGGGCGGGCACTATGTCGGC
195 ACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC----GGGCGGGCACTACGTCGGC
* *
15074960 CAGAGAGACGGGATGCGCAAGCCGTGGATTGAGAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
256 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* * * *
15075025 ATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGTCTTCAT
321 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * **
15075090 ATGAAGTTTCATGGCAAAACGACTCGTTTTCTATTTTTCACGATTTTTAAAACAATTTGCGGTTC
386 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTC
* * * * ** *
15075155 GGGATTTTTTAAAATTTTTTCGAAAGGATTTTTAGCCCTAAACTTATTAGACGTGATCCTTCTAC
451 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA-
*
15075220 TTTTT-TTGGCATGCACAAAAGAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
515 TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATT
* *
15075284 TGAAAGAAGTGTCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
580 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAA
** *
15075349 TGCTCTTTAAATGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
645 TGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
* * *
15075414 GTACCAGCACCCATCGCACATCATGTGCGCACA-ACCCCCGGTCTCCCCGATCGTCAGAACCCCA
710 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCCGATCGTCGGAACCCCA
* * * * *
15075478 ATGCCTTCGGTCAGGTTCTTCGGCGATGCTCCGACGATGGTGGCCCGGCGAAGAAAAATGTGGCA
774 ATGCCGTCGGTCAGGTTC-TCGACGATGCT-CGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCA
* * * * * *
15075543 CCAGCAGATACCCAAGCCCAGCAAGTGCTACCGCAACCCTCGGTCCGATCCGATCTTAGA
837 CCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* ** * *
15075603 TTGGGAATGAACTCCGTACCCTTAGACTGGGAATGAAATCCGTATGCCTATGTCAACCCACGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * * *
15075668 CGAGCATGAGGGCGCTCAGTCGACCAGAGGGGCGAGATGCACAAGCCG-GAGATCG-GCTGGGTC
66 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGATC-GGGTC
* * ** * * * *
15075731 CCTCTCT-AGTGCTACCGATCCTGCTA-CCGTAACCTTCGGTCCGGTCTGATCTTACACTGGGAA
129 CCCCTCTGCGTGCTGTCGATCCTGC-AGCCGTAACCCTCAGTCCAGT-TGATCTTAGACTGGGAA
* * * *
15075794 TGAACTCCGTATGCCTAAGTCAACCAACGAAACGA----ACGGACGGGCGGGCACTACG-CTGGC
192 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTC-GGC
*
15075854 CAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT--G----GG------TT--T
256 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
15075905 A-------G-G-C-A---C--TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
321 ATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * * *
15075955 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACCTTTTACAGTTT
386 GTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTC
* * * *
15076020 GGAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGTCCCAAACTTGGTAGACGTGATCCTTGAAT
451 GGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTAT
* * * * *
15076085 TTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAGGTTTACAACATTTTGTGACCATTT
516 TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
* * *
15076150 GAAAAAAGTGTCCCCATTACAGACACTTTAATGGCTACTGGCAGGAAACCTGTAAAATTTCAAAT
581 GAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAT
* * * *
15076215 GCTGTTTAAGGGCGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGG
646 GCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG
15076280 TACCAGCACCCATCGCACATCATGTGC
711 TACCAGCACCCATCGCACATCATGTGC
15076307 TCAGCCAGCC
Statistics
Matches: 6820, Mismatches: 876, Indels: 384
0.84 0.11 0.05
Matches are distributed among these distances:
864 5 0.00
865 353 0.05
867 1 0.00
870 1 0.00
871 1 0.00
872 1 0.00
878 266 0.04
879 66 0.01
880 163 0.02
882 3 0.00
883 1 0.00
884 10 0.00
885 6 0.00
886 286 0.04
887 6 0.00
888 283 0.04
889 180 0.03
890 272 0.04
891 8 0.00
892 196 0.03
893 453 0.07
894 198 0.03
895 154 0.02
896 163 0.02
897 49 0.01
898 212 0.03
899 579 0.08
900 716 0.10
901 763 0.11
902 601 0.09
903 257 0.04
904 16 0.00
905 40 0.01
906 308 0.05
907 203 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (896 bp):
CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCC
CCTCTGCGTGCTGTCGATCCTGCAGCCGTAACCCTCAGTCCAGTTGATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAG
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
TGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACTTTTTGCGGTTCGGGAT
TTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
GCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATCGTCGGAACCCCAATGCCGT
CGGTCAGGTTCTCGACGATGCTCGGCGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
Found at i:15070256 original size:26 final size:26
Alignment explanation
Indices: 15070219--15070271 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15070209 CCTGTTTGAT
15070219 CTTAGACGGAGAATGAACTCCATATG
1 CTTAGACGGAGAATGAACTCCATATG
* *
15070245 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACGGAGAATGAACTCCATATG
15070271 C
1 C
15070272 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACGGAGAATGAACTCCATATG
Found at i:15071138 original size:26 final size:26
Alignment explanation
Indices: 15071109--15071161 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15071099 CCGGTCTGAT
*
15071109 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
15071135 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
15071161 C
1 C
15071162 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:15072107 original size:25 final size:25
Alignment explanation
Indices: 15072078--15072134 Score: 78
Period size: 25 Copynumber: 2.3 Consensus size: 25
15072068 CAGGCCAGAG
* *
15072078 GGGCGGGATGCGCAAGCCGGGGATC
1 GGGCGGGATGCACAAGCCGAGGATC
*
15072103 GGGCGGGATGCACAAGCTGAGGATC
1 GGGCGGGATGCACAAGCCGAGGATC
*
15072128 GGTCGGG
1 GGGCGGG
15072135 TCCCCCTCCA
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.18, C:0.21, G:0.51, T:0.11
Consensus pattern (25 bp):
GGGCGGGATGCACAAGCCGAGGATC
Found at i:15073832 original size:26 final size:26
Alignment explanation
Indices: 15073794--15073846 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15073784 CCGATCCGGT
15073794 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
*
15073820 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCTGTATG
15073846 C
1 C
15073847 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCTGTATG
Found at i:15074723 original size:26 final size:26
Alignment explanation
Indices: 15074694--15074746 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15074684 CTGATCCGAT
* *
15074694 CTTACATTGGGAATGAACTCCGTATG
1 CTTACACTGGGAATGAACTCCATATG
*
15074720 CTTAGACTGGGAATGAACTCCATATG
1 CTTACACTGGGAATGAACTCCATATG
15074746 C
1 C
15074747 CTATGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCATATG
Found at i:15075626 original size:26 final size:26
Alignment explanation
Indices: 15075597--15075646 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15075587 CCGATCCGAT
* *
15075597 CTTAGATTGGGAATGAACTCCGTACC
1 CTTAGACTGGGAATGAAATCCGTACC
15075623 CTTAGACTGGGAATGAAATCCGTA
1 CTTAGACTGGGAATGAAATCCGTA
15075647 TGCCTATGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTACC
Found at i:15077654 original size:26 final size:26
Alignment explanation
Indices: 15077625--15077677 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15077615 CCGGTCCGAT
15077625 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15077651 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15077677 C
1 C
15077678 CTATGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15078551 original size:26 final size:26
Alignment explanation
Indices: 15078522--15078574 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15078512 CCATTCCGAT
*
15078522 CTTAGATTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
15078548 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
15078574 C
1 C
15078575 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:15079104 original size:905 final size:901
Alignment explanation
Indices: 15077287--15081989 Score: 5759
Period size: 905 Copynumber: 5.2 Consensus size: 901
15077277 AAACTTGGTA
*
15077287 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTTAGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
15077351 TGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAA
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
15077416 GGATAGGGGGCCACTATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGGGCACACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * *
15077481 GGCCCACCCGATCGTCAGAACCCCAATGCCGTCAGTCAGGTTCTCCGGCAATGCTCCGACGATGG
196 GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGACGATGG
* * *
15077546 TGCCCC-AGCGAAGAAAAATGTGGCACCAGCACATAG-CCGAGCCCAGCATGTGCTGCCGTAACC
261 TGCCCCGA-CGAAGAAAAATGCGACACCAGCACAT-GCCCGAGCCCAGCATGTGCTGCCGCAACC
* * *
15077609 AC-CGTTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
324 -CTCGATCCGTTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * **
15077673 TATGCCTATGTCAACCCACGAAACGAGC--GCAGGGATGCTCAGTCGGCCGGAGGGGCAGGATGC
388 TATGCCTAAGTCAACCCACGAAACGAGCGTGCA-GG-CGCTCAGTCGACCAGAGGGGTGGGATGC
* * * *
15077736 ACAAGCCAGGGATCAATCGGGTCCCCTTCTGCCTGCTGCCGATCTTGCTGCCACAACCCTCGGTC
451 GCAAGCCAGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCACAACCCTCGGTC
* * * *
15077801 TGGTC-GAATCTTAGACTGGGAATGAACTCCATATGCCTAAGCAAACCAACGAAAC-ATGC-G--
515 CGGTCTG-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-GCGGAC
** * *
15077861 G-GCGGGCA----GGCACTACGCCTAACCAGAGAGAC-GGATGCGTAAGCCGCGGATCGATAGGG
578 GAGCGGGCAGGCGGGCACTA--CCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
15077920 TGGTAGGTGGGTTTAGGCACCTCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
641 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
15077985 TTCATACAATGGCCCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGACGACTCGTTTTCTATTTT
706 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
15078050 TCACGA-TTTTCAAATCTTTTTACGGTTTGGGATATTTTAAAATTTTTTTGGAAGGAGGTTTGGC
771 TCACGATTTTTCAAA-CTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGC
* *
15078114 CCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAAC
835 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
15078179 TC
900 TC
* * * * *
15078181 GAAATGTACAAGATTTTGTGACTATTTGAAAAAAGTGTCCTCATTTTAGACACTTTAATGACTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * *
15078246 TGGCAGCAAACCTATAATATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
15078311 GGATAGGGGGCCAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCCCAGACCCCCC
131 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* *
15078376 TGGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGGCGAT
196 --GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGACGAT
** * * *
15078441 GGTGCCCCGGTGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAACC
259 GGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* *
15078506 CTCGATCCATTCCGATCTTAGATTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
324 CTCGATCCGTTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * *
15078571 ATGCCTAAGTCAACCCACGAAAGGAGCGTGTAGGCGCTTAGTCGACCAGAGGGGTGGGATGCGCA
389 ATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGACCAGAGGGGTGGGATGCGCA
* * * * *
15078636 AGCCAGGGATCAGTCGGGTCCCCCTCAGCGTGCTACCGATCTTGCTGCCACAACCCTTGGTCTGA
454 AGCCAGGGATC-GTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCACAACCCTCGGTCCGG
* *
15078701 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTATGCCAACCGACGAAACGATCGGACGAGCG
518 TCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGAGCG
* * * * *
15078766 GGCTGGCGGGCATTACACTGGCCTGAGAGGCGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAG
583 GGCAGGCGGGCACTAC-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
** *
15078831 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATAACATTTTTCTGGCTTGTAAATTCATA
647 GTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
15078896 CAATGGTCCCTTAAGCCTGCACGTGAAGTTTCATGTCAAGATGACTCGTTTTCTATTTTTCTCGA
712 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * * **
15078961 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGAAAAGAGTTTTGGCCCTGAAC
777 TTTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAAC
* * * *
15079026 TTGGTAGATGTGATCCTTGTATTTTTTTTCGTATGCACAAAAAAATTCAGCTAAAAACTC
842 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
15079086 GAAGTGTACAAGATTTTGTGACCATTT-AAAAGAAGTGACCCCATTTCAGACACATTAATGGCTA
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAA-AAGTGTCCCCATTTCAGACACTTTAATGGCTA
* * *
15079150 CTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGA
65 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * *
15079215 GGGATA-GGGGCCAATATAAGGGCCTAGTACCAGCACCCATCGCACATCATGTGCGTACTCCCAC
130 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-C
* * *
15079279 CTGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCTGTCAGGTTCT-C--CGA-----T---GAT
194 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGACGAT
* * * * *
15079333 GATGCCCCGATGAAGAAAACTGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGAAAAA
259 GGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG--CAA
* * **
15079398 GCCT-TAGTCCGGTTTTGATCTTAGACTTGGGAATGAAACTCCGTATGCTTAGACTGGGAATGAA
322 CCCTCGA-TCC-GTTCCGATCTTAGA-TTGGGAATG-AACTCCGTATGCTTAGACTGGGAATGAA
** * * * * * *
15079462 CTCTATATCACCTAAGTCAACCCAACGAAAAGAACGTGCGGGCGCCTCAAG-CCATCCAGAGGGC
383 CTCCGTAT-GCCTAAGTCAACCC-ACGAAACGAGCGTGCAGGCG-CTC-AGTCGA-CCAGAGGGG
* * * *
15079526 TGGGAAGCGCTAAGTCC-GGGATCGATCGGGTCCCCCTCTACGTGCTGCTGATCTCTACTG-CAC
443 TGGGATGCGC-AAG-CCAGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCT-TGCTGCCAC
* * * * *
15079589 AACCCTCAGTCCGGT-TGATCTTAGACTGGGAATTAAACTCCGTA-GCCTAAG-CATCATGATGG
504 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAA-TGAACTCCGTATGCCTAAGCCAAC-CGA-CG
* * * * * *
15079651 AAACGACACGGGCGGGC-GGCGGGCGGGCA-TACGTCGGCCCAGAGAGATGGGAATGCGCAACGC
566 AAACGA-GCGGACGAGCGGGCAGGCGGGCACTACCT-GG-CCAGAGAGACGGG-ATGCGCAA-GC
* * * **
15079714 AGTGGATCGATA-GGTGGTAGGTGGATTCTAGGCATATCTTCATATTTCTGCGTGCCAATGCCAT
626 CGTGGATCGATAGGGTGGTAGGTGGGTT-TAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
*
15079778 TTTGATGGCTTGTAAATTCATACAATGGTCCC-TAAG-CTTCAC-TGAAGTTTCATGG-AAGAC-
690 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* *
15079838 ACTCGTTTTCTATTTTTCAAACGATTTTCACAAACTTTTTTATGG-TCGAGATTTTTTAAAATTT
755 ACTCGTTTTCTATTTTTC--ACGATTTT-TCAAAC-TTTTTACGGTTCGAGATTTTTTAAAATTT
* *
15079902 TTTCGGAAAGGAGTTTTGGCCCGAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
816 TTTTGG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
15079967 AAACAAATTCAGCTAAAAACTC
880 AAAAAAATTCAGCTAAAAACTC
* *
15079989 -AGAGTGTACAAGATTTTGTCACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
1 GA-AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
15080053 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
65 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
15080118 GGGATAGGGGGCCAATATAAGAGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCC
130 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC
* **
15080183 CCGGCCCCCCCGATCATCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCT-TCGACGA
194 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCT-GACGA
* * *
15080247 TGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGTAAC
258 TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
*
15080312 CCT---T--G----G-TC------T-GG--T---CT--G-AT-CTTAGACTGGGAATGAACTCCT
323 CCTCGATCCGTTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * * *
15080351 TAAGCCTAAGTGAACCCATGAAATGAAGAGTAC-GGTC-CTCAGTCGGCCAGAGGGGTGGGATGT
388 TATGCCTAAGTCAACCCACGAAACG-AGCGTGCAGG-CGCTCAGTCGACCAGAGGGGTGGGATGC
* * * **
15080414 GCAAGCCAGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCTTTC
451 GCAAGCCAGGGATCG-TCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCACAACCCTCGGTC
* * * *
15080479 CAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACGAGCGGGCGG
515 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGA
* * * *
15080544 GCGGGGGGGCAGGCGGGTACTACGCCGGCTAGAGAGACGGGATGCGCAAGCCCTGGATCGATAGG
580 GC----GGGCAGGCGGGCACTAC-CTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* *
15080609 GTGGTAGGTGGGTTTAGGCACAT-TTCCATATTT-TCTGCATGCCAATGCCATTTTTATGGCTGG
640 GTGGTAGGTGGGTTTAGGCACATCTT-CATATTTCTATG--TGCCAATGCCATTTTTATGGCTTG
* * *
15080672 TAAATTCATACAATGATCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTA
702 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
* * *
15080737 TTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGGGTTTT
767 TTTTTCACGATTTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTT
* * * * * *
15080802 GGCCTCAATCTTGGTAGACATGATCCTTGTATTTTTGATGGCATGCACAAAAACATTTAGCTAAA
832 GGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAA
15080867 AACTC
897 AACTC
*
15080872 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
15080937 TGGCAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA
66 TGGC-AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
15081002 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCTCC
130 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CC
* * * ** *** * *
15081067 CCGG-GCCCTCGATC-TCCAGAACCCCAAT----TTTGT-A-G--CT--AAAG-TTCTCCGACGA
194 CCGGCCCCCCCGATCGT-CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGACGA
15081119 TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
258 TGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * * * *
15081184 CCTCGGTCTGGTCCGATCTTACATTGGGAATGAACTCCGTATGGTTAGACTAGGAATGAACTCCG
323 CCTCGATCCGTTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * *
15081249 TACGCCTAAGTCAACCTATGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGCGAGATGCAC
388 TATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGACCAGAGGGGTGGGATGCGC
* * * * * * **
15081314 AAGCCGGGGATCGGTCGGG-CCCACCTCTGTGTGTTACCGATCCTGCTACCTTAACCCTCGGTCC
453 AAGCCAGGGATC-GTCGGGTCCC-CCTCTGCGTGCTGCCGATCTTGCTGCCACAACCCTCGGTCC
** * *
15081378 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCAGGAGGA
516 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGACGA
* *
15081443 -CGGGCAGGCGGGCACTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGG
580 GCGGGCAGGCGGGCACTACCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
15081507 TACGTGGGTTTAGACACATCTTCATATTTCTATATGCCAATGCCATTTTTATGGTTTGTAAATTC
644 TAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTC
15081572 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
709 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * * *
15081637 CGATTTTTAAAACTTTTTGCGATTCCAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTAGCCCCA
774 CGATTTTTCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCA
*
15081702 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTG
839 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
15081765 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCGGACACTTTAATGGCTAC
1 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * *
15081830 TGGCAGTAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAG
66 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
15081895 GGATAGGGGGCCAATAATAAGGG-C-AGTACCA-TAGCCCATCTCGTACGATCATGTG-TCACAC
131 GGATAGGGGGCCAAT-ATAAGGGCCAAGTACCAGCA-CCCA--TCGCAC-ATCATGTGCGCACA-
*
15081956 CCCCCCGGCACCCCCGATCGTCGGAACCCCAATG
190 CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATG
15081990 TTCCCAGTCA
Statistics
Matches: 3309, Mismatches: 360, Indels: 279
0.84 0.09 0.07
Matches are distributed among these distances:
872 73 0.02
873 1 0.00
875 3 0.00
877 2 0.00
878 16 0.00
879 69 0.02
880 47 0.01
881 35 0.01
882 73 0.02
883 206 0.06
884 183 0.06
885 23 0.01
886 6 0.00
887 17 0.01
888 3 0.00
889 2 0.00
890 1 0.00
891 12 0.00
892 132 0.04
893 294 0.09
894 157 0.05
895 163 0.05
896 11 0.00
897 367 0.11
898 187 0.06
899 40 0.01
900 15 0.00
901 75 0.02
902 122 0.04
903 286 0.09
904 231 0.07
905 382 0.12
906 7 0.00
907 4 0.00
910 1 0.00
911 1 0.00
913 5 0.00
915 57 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (901 bp):
GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
GGCCCCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCTGACGATGG
TGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
CGATCCGTTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTAT
GCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGTCGACCAGAGGGGTGGGATGCGCAAG
CCAGGGATCGTCGGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCCACAACCCTCGGTCCGGTCT
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGACGAGCGGGC
AGGCGGGCACTACCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
TCAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
Found at i:15082513 original size:26 final size:26
Alignment explanation
Indices: 15082477--15082529 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15082467 CAGGTCAGAT
15082477 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15082503 CTTAGACTGGGAATGAATTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15082529 C
1 C
15082530 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15083413 original size:26 final size:26
Alignment explanation
Indices: 15083375--15083427 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15083365 CCGGTCCGAT
15083375 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
* *
15083401 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15083427 C
1 C
15083428 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15083913 original size:903 final size:897
Alignment explanation
Indices: 15082099--15091518 Score: 8382
Period size: 894 Copynumber: 10.4 Consensus size: 897
15082089 CTTGTTGTGC
* * * *
15082099 TGGCATGCACCAAAAAATTCACGCGCTAAAAACTCGAATTGTACAACATTTTGTGACAATTTGGA
1 TGGCATGCACAAAAAAATTCA---GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GA
* * * *
15082164 AAAAAG-GTCCTCGTTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTTGTAAAAATCTGAAAT
62 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC-TGT-AAAATCTCAAAT
*
15082228 GCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCATATATAATAGG-C
125 GCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA-ATATAA-GGGCC
* * * * *
15082292 AAGTACCAGAAACCCATAGCACAT-ATGTCCACCACACCCCCCCG-CCCCCGATCGTC-GAA-CC
187 AAGTACCAG-CACCCATCGCACATCATGTGC-GCACACCCCCCGGCCCCCCGATCGTCGGAACCC
* * * * * * * **
15082353 C-AATCCGCC-GTCCAGTGTTGTCCGGCGGTGCTCTTGGCGAATGGTGGCCCAGGCAAAGAAAAA
250 CAAAGCCGCCAGT-CAG-GTTCTCCGACGATGCTC-CGACG-ATGGT-GCCCTGGTGAAGAAAAA
* * * * ** * * *
15082416 TGCAGCCCCAGCACCTGTCTGAGCCCAGCATGTGCTGCTACAACCCACGATCAGGTCAGATCTTA
310 TGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTA
* * *
15082481 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAATTCCGTATGCCTAAGTCAACCCCCGG
375 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * *
15082546 AACGAGTGTGCGGACGCTTAGCCGGCCAGAGGGGTGGGATGCGCAAGCC-AGGGATCAGCTGGGT
440 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGA-GGATCGGC-GGGT
* * * *
15082610 CCCTCTCTGCGTGCTACCGATCCTGCTGCCACAACCCAT-GGTTTGGTCTGATCTTAGACTGGGA
503 ACCTCTCTGCGTGCTACCGATCCTGCTGCCGCAACCC-TCGGTCTGGTCCGATCTTAGACTGGGA
* *
15082674 ATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA-GCGGGCGGGCGGGCGGGCACTACACCGG
567 ATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGGCGGGCGGGCAGGCGGGCACTACGCC-G
* * * *
15082738 CCAGAGAGACAGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCA
631 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
* *
15082803 TATTTCTGTGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTGA
696 TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * ** *
15082868 CGTGAAGTTTCATGGCAAGATGACTCGTTTTGTGTTTTTCATGATTTTCAAAACTTTCTGCGGTT
761 CGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
* * * * * *
15082933 CAGGATTTTTTAAAATTTTTTTAGAATGAGTTTTGGCCTCAAACATGGTAGACTTGATCCTTGTA
826 CAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
15082998 TTTTTGT
891 TTTTTGT
* * *
15083005 TGGCATGCACAAAAAAATTCAACTAAAAACTCGAGGTGTACAAGATTTTGTGATCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
15083070 AGTGTCCCCATTTCAGACACTTTAGTGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
15083135 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
15083200 CACTCATCGCACATCATGTGCGAACACCCCCCGGCCCCCTGATTG-CTGGAACCCCAATA-CCGC
196 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC-GGAACCCCAA-AGCCGC
* * * * ** *
15083263 CAATAAGGTTCTCCGACGTTGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACAC
259 CAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGCAGCACCAGCAC
* * * * *
15083328 ATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAAC
324 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAAC
* * *
15083393 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGG
389 TCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * *
15083458 CGCTAAGCCGGCCAGAGGGGTGGGATGCGTAAGCCGGGGATCGGTCGGGTACCTCTCTGCGTGCT
454 CGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGG-CGGGTACCTCTCTGCGTGCT
* * ** * * *
15083523 GCTGATCCTGCTGCTACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGCATGCA
518 ACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCC
* * *
15083588 TAAGCCAACAGACGAAACGAGCGCCGGGCGGGCCAAGGCGGGCACTACGCCGCCAGAAAGATGGG
583 TAAGCCAACTGACGAAACGAG-G-CGGGCGGG-C-AGGCGGGCACTACGCCGCCAGAGAGACGGG
*
15083653 AAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
644 -ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
*
15083718 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAA
708 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * * * ** *
15083783 TGGCAAGATGACTCATTTTGTATTTTTCACGA-TTTTCAAAATTTTTGTGGTTCGGGATCTTTTA
773 TGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTA
*
15083847 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTT
838 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG-T
15083908 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
15083973 AGTGTCCACATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
** *
15084038 TAAGGGGGCCTGAGTTCTCGAGGTTTGAT----G--A--GGG---ATAT-GGGGCCAAGTACCAG
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
15084091 CACCCATCGCACATCATGGGCGCACACCCCCCGGCCCCCCGATCATCGAAACCCCAAAGTCGCCA
196 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAAAGCCGCCA
* * *** *
15084156 GTCAGGTTCTTCGACGATGCTCTGGTAATGGTG-CCTGGTGAAGAAAAATGCGGCACCAGCACAT
261 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGCAGCACCAGCACAT
* * *
15084220 GCCCGAGCCCAGCATGTGCTACCGTAACCCTCGATCCGGTTTGATCTTAGACTGGGAATGAACTC
326 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
* * *
15084285 CGTATGCTTAGAATGGGAATGAACTTCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCG
391 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * * *
15084350 CTCAGCAGGCCAGAAGGGTGGGATGCGCAAGCCGACGATCGGCCGGGT-CGCCCTCTGTGTGCTA
456 CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGG-CGGGTAC-CTCTCTGCGTGCTA
* * * * *
15084414 CCGATCTTGCTGCCGCGACCCCCGGTCTGGTCCGATCTTAGAC-CGGAATGAACACCGTATGCCT
519 CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** *
15084478 AAGCCAACTGATGAAACGAGGGCGGCGCGTG--GGCGATCACTACGTCGGCCAGAGAGACGGGAT
584 AAGCCAACTGACGAAACGA-GGCGG-GCGGGCAGGCGGGCACTACG-CCGCCAGAGAGACGGGAT
15084541 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCA
646 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCA
* *
15084606 ATGCCATTTTT-TGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCCTGG
711 ATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG
* * * *
15084670 CAAGACGACTCGTTTTCTATTTTTCATGATTTTTTGAAACTTTTTACGATTCAAGATTTTTTTAA
776 CAAGATGACTCGTTTTCTATTTTTCATGA-TTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAA
* * *
15084735 ATTTTTTTGAAAGAAGTTTTGGCCCCAAACTGGGTAGACGTGATCCTTGTATTTTTGT
840 ATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
15084793 TGGCATGCACAAAAAAATTCATCTAAAAACACGAAGTGTACAAGATTTTATGACCATTTGAATAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * * *
15084858 AGTGTCCCCACTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTTAAAAGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
*
15084923 TAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
*
15084988 CACCCATCGCAAATCATGTGCGCACACCGCCCC-GCCCCCCGATCGTC-GAACCCCAAAGCCGCC
196 CACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCGATCGTCGGAACCCCAAAGCCGCC
* * * * *
15085051 GGTCAGGTTCTCCGGCGATGCTCCAACTATGGTGCCCCGGTGAAGAAAAATGCTA-CACCAGCAC
260 AGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGC-AGCACCAGCAC
* ** * * *
15085115 ATGCCCGAG-CCAGCATGTGCTGCCACAACCCTC-AGTCCAATCCGATCTTATACTGGAAATGAA
324 ATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAA
** *
15085178 CTCCACATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGG
388 CTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
*
15085243 GCGCTCAGTCGGCCAGAGGGGTGGGATGCGCCAA-CCGAGGATC--C-GGTCACCT-TCTGCGTG
453 GCGCTCAGCCGGCCAGAGGGGTGGGATGCG-CAAGCCGAGGATCGGCGGGT-ACCTCTCTGCGTG
** * * * * *
15085303 CTGTCAATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACT-GGAATGAACTCCGTATG
516 CTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15085367 CCTAAG-CAACCGACGAAAC-A----AGCGGGCA----GGCACTATGCCGACCAGAGAGACGGG-
581 CCTAAGCCAACTGACGAAACGAGGCGGGCGGGCAGGCGGGCACTACGCCG-CCAGAGAGACGGGA
*
15085421 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCC
645 TGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCC
**
15085486 AATGCCATTTTTATCACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
710 AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATG
* * * *
15085551 GCAAGATGACTTC-TTTTCTATTTTTCACGATTTTTGAAACTTTTTGAGGTTCAAAATTTTGTAA
775 GCAAGATGAC-TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAA
* **
15085615 AA-TTTTTTGAAAGGAGTTTTGGCCCCAAACTTAATAGACGTGATCCTTGTATTTTTGT
839 AATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
15085673 TGGCACGCACAAAAAAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
15085738 AGTGTTCACATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
** *
15085803 TAAGGGGGCCTGAGTTCTCGAGGTTTGAT----G--A--GGG---ATAT-GGGGCCAAGTACCAG
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * *
15085856 CACCCATCGCACATCATGGGCGCACACCCCCCGGCCCCCCGATCATCGAAACCCCAAAGTCGCCA
196 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAAAGCCGCCA
* * ** *
15085921 GTCAGGTTCTTCGACGATGCTCTGGTGATGGTG-CCTGGTGAAGAAAAATGCGGCACCAGCACAT
261 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGCAGCACCAGCACAT
* * *
15085985 GCCCGAGCCCAGCATGTGCTACCGTAACCCTCGATCCGGTTTGATCTTAGA-TGGGAATGAACTC
326 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
* * *
15086049 CGTATGCTTAGAATGGGAATGAACTTCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCG
391 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
* * * *
15086114 CTCAGCAGGCCAGAAGGGTGGGATGCGCAAGCCGACGATCGGCCGGGTCACC-CTCTGTGTGCTA
456 CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGG-CGGGT-ACCTCTCTGCGTGCTA
* * * ** * * *
15086178 CCCATCTTGCTGCTGTGACCC-CGGTCT-GTCCGATCTTAGACCGGGAATGAACACCATATGCCT
519 CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * *
15086241 AAGCCAACTGATGAAACGA-GCGGGCGGGCGGGCTGGCGATCACTACGTCGGCCAGAGAGACGGG
584 AAGCCAACTGACGAAACGAGGCGGGCGGGCAGGC-GG-G--CACTACG-CCGCCAGAGAGACGGG
*
15086305 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGC
644 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGC
* *
15086370 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCCT
709 CAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAT
* * *
15086435 GGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTTGAAACTTTTTACGGTTCAAGATTTTTTT
774 GGCAAGATGACTCGTTTTCTATTTTTCATGA-TTTTTGAAACTTTTTGCGGTTCAAGATTTTTTA
* *
15086500 AAATTTTTTTGGAAGAAGTTTTGGCCCCAAACTGGGTAGACGTGATCCTTGTATTTTTGT
838 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * *
15086560 TGGCACGCACAAAAAAATTTAGGTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* **
15086625 AGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAAAAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * * * * ***
15086690 TAAGGGGGTTTGAGTTCTTGAGGTTTGATGAGGGATAAGAGGCCAATAGAAATACCAAGTACCAG
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * *
15086755 CACCCATCGCACATCTTGTGCACACA-CCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCACCG
196 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAAAGCCGCCA
* * **
15086819 GTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCTGATGAAGAAAAATGGGGCACCAGCACAT
261 GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGCAGCACCAGCACAT
* * * *
15086884 TCCCAAGCCCAACATGTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
326 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
* * ** * * * * ** * *
15086949 TGTATGCCTA-A----G--CCAA--CCG-A---CGAA-ACGA-GCA-G--GTGGGCAG-ACGGGC
391 CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGC
* ** * ** **** **** ** ** * **
15086995 ACT-ACGTTGGCCAGAGAGACGGGATTTTTTAAAATTA-TTTCACCTGGGAATGAACTC-C-GTA
455 GCTCA-GCCGGCCAGAGGGGTGGGA-TGCGCAAGCCGAGGATCGGC-GGG--T-ACCTCTCTGCG
* * ** * * * ** * ** **
15087056 TGCTTA---A-ACTG-GGAATG-AA-CTTC-GTAT-G-CCTAAGTCA-AC---CCATGAAACAAG
514 TGC-TACCGATCCTGCTG-CCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG-AAC-TC
* * * * *** * * *
15087107 CGTGCAGGCGCTCAGCCAGCCAGA-GGGGCGGGATGAGCGAGCCGGGGATCGGTCGAGTGCCCCT
575 CGT--ATGC-CTAAGCCA-ACTGACGAAAC--GA-G-GCG-GGCGGGCA--GG-CG-G-G-CACT
* * ** ** * * * * * **** ** * *
15087171 -CTGCGTGCTATCGATTC-TGTTGCCGCAA-CCCT-CAGTCCGGTCCAATCTTAGACTGGG--AA
625 AC-GC-CGCCAGAGAGACGGGATG-CGCAAGCCGTGGA-T-CGATAGGGTGGTAG-GTGGGTTTA
* * * * * ** * * *** * ** * * ** *
15087230 TG-A-A-CTCCGTA-TGC-CTAAGCCAACCGACAAAATGAGTGGGCGGGCAGGCAGGCACTAC-G
684 GGCACATCTTCATATTTCTGTGTGCCAA-TGCCATTTTTA-T-GGCTTGTA--AATTCA-TACAA
* * ** * *** * * * * * * * *
15087289 TCG-ACCAGAGAGACAGGATGCGCAAG--CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC-A
743 TGGTCCCTTA-AGCCTTCACGTG-AAGTTTCATGG--C-A-A-GAT-G-A-CT-CGTTT--TCTA
* * ** * ** *
15087350 CATCTTCAT-ATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAA-A-TTCATACAATGGTGCC
795 -TTTTTCATGATTTTTG-A----AA---C-TTTTTGCGG-TT-CAAGATTTTTTAAAAT--T---
** * * *** * ** ** ** * * * *
15087412 CTAAGCCTT-CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTAAACGATTTTCAAAA
843 -T---TTTTGGAAG-G-AGTTT--TGGCCCCA-AACT--TGGTAGA-CGTGATC-CTTGT----A
15087476 CTTTTTACGGTT
891 -TTTTT---G-T
* *** *** * * * * **
15087488 TGGGATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGAGCCAAACTTGGTAGACGTGATCCTTGTA
1 TGGCA-TGCACAAAA-AAATTC------AG--CT--A--AAAAC-TCG-A-A-GTG-TACAAG-A
* *** *** * ** ** * * * * **
15087553 TTTTTTTTTTCATGCACAAAAAAAT-TCAGCTAAAAACTC-GA-AGTGTACA-AGATTTTGTGAC
46 -TTTTGTGACCAT-TTGAAAAAAGTGTC--C--CCATTTCAGACACTTTA-ATGGCTACTG-G--
*** ** * * **
15087614 CATTTG-AAAAAAGTACCCCTATTTCAGACACT-TTAATGGCTACTGGCAGCAAACTGTAAAATC
101 CA---GCAAACCTGTA---AAATCTCAAATGCTCTT-----------------------------
*
15087677 TCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
131 T--AA-G--------GG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
** ** * *
15087742 GCCAAGTACCAGCACGTATCGCACATCATGTGCGCACACACCCCCGATCCCCCGATCGCCGGAGC
184 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCGGCCCCCCGATCGTCGGAAC
* * * * * * * * ** ** * *
15087807 CCCAATGCTGTCGGTTAGCTTCTTCAACGATGCTCCGGTGATGGTGCCCCAGCGAAGAAAAATAC
248 CCCAAAGCCGCCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGC
* * * * *
15087872 AGCAGCAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAATCGTCGGTCCGGT-TCGATCTTAGA
313 AGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCT-GATCTTAGA
* * * * *
15087936 CTGGGAATGAACTTCTTATGCTTAGACTAGGAATGAATTCTGTATGCCTAAGTCAACCCACGAAA
377 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * ** * * * * *
15088001 TGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCAGGTCCC
442 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCG-GCGGGTACC
* * * ** * * ** * * * * *
15088066 CCTCTACGTCCTGTCAATCCTACTATC-AAACCCTTGTTCTGATCCAATCTTAGACTGGGAATGA
506 TCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGA
* * * * *
15088130 ACTCCGTATGCCTAAGCCAACCGATGAAACGA-GCGGGCGGATGGGCGGGTGGGCACTACGTCGG
571 ACTCCGTATGCCTAAGCCAACTGACGAAACGAGGCGGGC----GGGCAGGCGGGCACTACG-CCG
* *
15088194 CCAGAGAGACGGGAT-CACAA-CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
631 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCA
** * *
15088257 TATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTGA
696 TATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCA
* * * * * *
15088322 CGTAAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCTTGATTTTTGAAACTTTTTACGATT
761 CGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTT
** * * ** *
15088387 TTAGATTTTTT-AATTTTTTTTGGAAGGATTTTTGGCCATAAAGTTGGTAGACGTGATCCTTGTA
826 CAAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTA
15088451 TTTTTGT
891 TTTTTGT
* *
15088458 TGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
15088523 AGTGTCCCCATTTCTGACACTTTAATCGCTACTGACAGCAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
15088588 TAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGTAACAG
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
15088653 CACCCATCGCACATCATGTGCGCACAACCCCCCTCGACCACCCCTATCGTCGGAACCCCAATGCC
196 CACCCATCGCACATCATGTGCGCAC-A-CCCCC-CGGCC-CCCCGATCGTCGGAACCCCAAAGCC
* * ** * * * * *
15088718 G-CGGTCA-GTTCTCGGGTGATACT-CTAGCGATGGTGCCC-CGTGAAGAAAAATGCAACACCAA
257 GCCAGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCTGGTGAAGAAAAATGCAGCACCAG
* ** * *
15088779 CACATGCCTGAGCCCTTCTTGTGCTGCCGCAACCCTCGATCCGGTCTGATCTAAGACTGGGAATG
321 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATG
*
15088844 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGC
386 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * *
15088909 GGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGCTGGGTCCCTCTTTGCAT
451 GGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGC-GGGTACCTCTCTGCGT
** * * * * * * *
15088974 GCTGTCAATCCTGCAGTCACAACCCTCAGT-TCAGT-TGAATCTTAGACTGGGAATGAACTCCGT
515 GCTACCGATCCTGCTGCCGCAACCCTCGGTCT-GGTCCG-ATCTTAGACTGGGAATGAACTCCGT
* * *
15089037 ACGTCTAAGCCAACTGACGAAACGA-GCGGG-TGGC-GAGCGGGCACTACGCCGACCAGAGAGAC
578 ATGCCTAAGCCAACTGACGAAACGAGGCGGGCGGGCAG-GCGGGCACTACGCCG-CCAGAGAGAC
* *
15089099 GGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATATTTCTGTG
641 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTG
* * *
15089164 TGCGAATGCCATTTTTTTGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGTGAAGTTT
706 TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTT
** * * **
15089229 CATGGCAAGGCGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTCTGCAGTTCGGGATTTTT
771 CATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTT
* * *
15089294 TAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATTTTTGT
836 TAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
** ** * * *
15089356 TGGGGTGTGC-AAAAAATTCAGCTAAAAACTCAAAGCGTACAAGATTTTTTGACCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
*
15089420 GGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * ** *
15089484 TAA-GGGGTGTGATTTCTCGAGGTTTGATGAGGGATAGTGGTTCAATATAAAGGCCAAGTACCAG
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * * * * *
15089548 AAACCCATCACACATCATTTGCGCACA-CCCCCGGCCCCCCGATC-TC-GAATCCCAATGCCGTC
196 -CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAAAGCCGCC
* * * *
15089610 GGTCAGGTTCT-C--C-A------G-CGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACA
260 AGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGCAGCACCAGCACA
** * * * *
15089664 TGCTTGAGCCTAGCATGTGCTG-CGTAACCCTCGATCCTGTTTGATCTTAGAC-GGGAATGAACT
325 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACT
* * * *
15089727 CCATATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACAAGCGTGCGGGC
390 CCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * * * *
15089792 GCTCAACCGACTAGAGGGGCGGGATGCACAAGCCGAGGATCGATCGGGTCCCCCTCTACGTGCTA
455 GCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCG-GCGGGTACCTCTCTGCGTGCTA
* * * * ** * * *
15089857 CCGATCCTGCTACCACAACCTTCGGTCAGGTTTGATTTTTGACTGGGAATGAACTTCGTATGCCT
519 CCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * *
15089922 AAGCCAACCGATGAAA-TA--------AGCAGGCGGGCACTACACCGGCCAGAGAGATGGGATGC
584 AAGCCAACTGACGAAACGAGGCGGGCGGGCAGGCGGGCACTACGCC-GCCAGAGAGACGGGATGC
* * *
15089978 GCAAGCCGTGGATCGATATGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCTGTGAGCCAAT
648 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAAT
*
15090043 GCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
713 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* * * *
15090108 AGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTAAAATT
778 AGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATT
* * * * *
15090173 TTTTCGTATGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTTT
843 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* *
15090228 TGGCATGCTCAAAAAAAATTCAGCT-ACAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
1 TGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAA
* * *
15090292 AAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCACCGAACCTGTAAAATCTCAAATGCTCT
65 AAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCT
* * **
15090357 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAGGGATAGGGGACCAATATAAAAGCCAAGTACCA
130 TTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCA
* * * ** * * *
15090422 GCACCCATCGTACATCATGTGCGCAC-CCCCTCGGGCCCTTCCGATCACCGGAGCCCCAATGTCG
195 GCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCC-CCCGATCGTCGGAACCCCAAAGCCG
* * * * * * **
15090486 TCGGTCTGGTTCTTCGACGATGGTCCGGCGATGGTG-CCTCGACGAAGAAAAATGC-GCCACCAG
258 CCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCT-GGTGAAGAAAAATGCAG-CACCAG
* * *
15090549 CACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATG
321 CACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATG
* *
15090614 AACTCCGTATGCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAACGAGCGTGC
386 AACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* ** * * * * * * *
15090679 GGGTGCTCAATCGGCCAGAGGGGCGGGAAGCGCAGGTC-AGAGTTCGATCGGGT-CCCCTTCTGC
451 GGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAG-GATCG-GCGGGTACCTC-TCTGC
*** * * * ** *
15090742 GTGCTGTTGATCCTACTACCGTAACCCTCAATCCGGTCCGATCTTAGACTGGGAATGAACTCCGT
513 GTGCTACCGATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGT
* * * ** *
15090807 ATGCCTAAGACAACCGATGAAACGA-GCGGGC--G--GGCGGGCACTACGATGGCAGAGAGACGG
578 ATGCCTAAGCCAACTGACGAAACGAGGCGGGCGGGCAGGCGGGCACTACGCCGCCAGAGAGACGG
* **
15090867 GATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTG
643 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
15090932 CCAATGCCATTTTT-TAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
708 CCAATGCCATTTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTC
* * * **
15090996 ATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGATTCGGGATTTTTT
772 ATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTT
* * * * *
15091061 AAAATTTTTTTGGAAGCATTTTTGGCCCCAAACTTGGTAGACTTTATCCTTGTATTTATGT
837 AAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
* * * * *
15091122 TGGCCTGCACACAAAAATTTAGTTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * *
15091187 AGTTTCCCCATTGCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCGCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
**
15091252 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTGAATATAAGGGCCAAGTACCAG
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* * *
15091317 CACCCATCGCAAATCATGTGCGCACACCCCCCTCGGCCCCCCGATCG-CTGGAACCCCAATGTCG
196 CACCCATCGCACATCATGTGCGCACA-CCCCC-CGGCCCCCCGATCGTC-GGAACCCCAAAGCCG
** * ** **
15091381 CTGGTCAGGTTCT-CGACGATGCTCCGGCGAT-GTG-CCTCGACGAAGAAAAATGTGGCACCAGC
258 CCAGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCT-GGTGAAGAAAAATGCAGCACCAGC
* ** * * * * * *
15091443 ACATGCTCGAGAACAGCATGTGCTGCGGCAACCCTTGGTCTGGTCCGATCTTAGACTAGGAATGA
322 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGA
15091508 ACTCCGTATGC
387 ACTCCGTATGC
15091519 CTAAGTCAAC
Statistics
Matches: 6937, Mismatches: 1177, Indels: 813
0.78 0.13 0.09
Matches are distributed among these distances:
867 7 0.00
868 192 0.03
869 77 0.01
870 13 0.00
871 26 0.00
872 310 0.04
873 46 0.01
874 100 0.01
875 64 0.01
876 15 0.00
877 9 0.00
878 38 0.01
879 191 0.03
880 246 0.04
881 159 0.02
882 128 0.02
883 21 0.00
884 120 0.02
885 409 0.06
886 156 0.02
887 211 0.03
888 8 0.00
889 106 0.02
890 274 0.04
891 304 0.04
892 79 0.01
893 128 0.02
894 455 0.07
895 140 0.02
896 276 0.04
897 315 0.05
898 422 0.06
899 422 0.06
900 154 0.02
901 56 0.01
902 145 0.02
903 390 0.06
904 3 0.00
906 20 0.00
908 2 0.00
909 2 0.00
910 2 0.00
911 3 0.00
912 5 0.00
914 5 0.00
915 3 0.00
917 2 0.00
918 3 0.00
919 3 0.00
923 1 0.00
924 5 0.00
927 1 0.00
928 5 0.00
929 5 0.00
930 2 0.00
936 2 0.00
938 1 0.00
939 8 0.00
940 3 0.00
941 1 0.00
942 10 0.00
943 2 0.00
944 3 0.00
945 4 0.00
946 6 0.00
947 12 0.00
948 8 0.00
949 21 0.00
950 8 0.00
951 12 0.00
952 6 0.00
953 4 0.00
954 3 0.00
955 2 0.00
956 10 0.00
958 3 0.00
959 8 0.00
960 1 0.00
962 2 0.00
968 3 0.00
969 6 0.00
970 4 0.00
971 1 0.00
974 5 0.00
975 1 0.00
979 3 0.00
980 3 0.00
981 3 0.00
983 2 0.00
984 6 0.00
986 4 0.00
987 4 0.00
988 2 0.00
989 2 0.00
990 2 0.00
994 1 0.00
995 2 0.00
996 5 0.00
997 10 0.00
998 3 0.00
999 74 0.01
1000 1 0.00
1001 145 0.02
1002 1 0.00
1005 7 0.00
1006 8 0.00
1007 4 0.00
1008 3 0.00
1009 1 0.00
1010 3 0.00
1011 2 0.00
1012 1 0.00
1013 5 0.00
1014 17 0.00
1015 22 0.00
1016 23 0.00
1017 15 0.00
1018 15 0.00
1019 39 0.01
1020 11 0.00
1021 4 0.00
1022 7 0.00
1023 5 0.00
1024 107 0.02
1025 173 0.02
1026 129 0.02
1027 321 0.05
1028 98 0.01
1029 108 0.02
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGAACCCCAAAGCCGCCA
GTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCTGGTGAAGAAAAATGCAGCACCAGCACAT
GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
CGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG
CTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGCGGGTACCTCTCTGCGTGCTACC
GATCCTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAA
GCCAACTGACGAAACGAGGCGGGCGGGCAGGCGGGCACTACGCCGCCAGAGAGACGGGATGCGCA
AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCC
ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
TGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTT
TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT
Found at i:15084294 original size:26 final size:26
Alignment explanation
Indices: 15084265--15084317 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15084255 CCGGTTTGAT
*
15084265 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
15084291 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
15084317 C
1 C
15084318 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:15084880 original size:885 final size:883
Alignment explanation
Indices: 15082099--15086955 Score: 5961
Period size: 903 Copynumber: 5.4 Consensus size: 883
15082089 CTTGTTGTGC
* * * *
15082099 TGGCATGCACCAAAAAATTCACGCGCTAAAAACTCGAATTGTACAACATTTTGTGACAATTTGGA
1 TGGCATGCACAAAAAAATTCA---GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT-GA
* * * *
15082164 AAAAAG-GTCCTCGTTTCAGACACTTTAGTGGCTACTGGCAGCAAACCTTGTAAAAATCTGAAAT
62 AAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC-TGT-AAAATCTCAAAT
*
15082228 GCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCATATATAATAGGCA
125 GCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGG-C------------CA
* * * * *
15082293 AGTACCAGAAACCCATAGCACAT-ATGTCCACCACACCCCCCCG-CCCCCGATCGTCGAA-CCC-
176 AGTACCAG-CACCCATCGCACATCATGTGC-GCACACCCCCCGGCCCCCCGATCGTCGAACCCCA
* * * * * * **
15082354 AATCCGCC-GTCCAGTGTTGTCCGGCGGTGCTCTTGGCGAATGGTGGCCCAGGCAAAGAAAAATG
239 AAGCCGCCAGT-CAG-GTTCTCCGACGATGCTC-TGGTG-ATGGT-GCCCTGGTGAAGAAAAATG
* * * * * ** * * *
15082418 CAGCCCCAGCACCTGTCTGAGCCCAGCATGTGCTGCTACAACCCACGATCAGGTCAGATCTTAGA
299 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGA
* *
15082483 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA-TTCCGTATGCCTAAGTCAACCCCCGGA
364 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTT-CGTATGCCTAAGTCAACCCACGAA
* * * * * *
15082547 ACGAGTGTGCGGACGCTTAGCCGGCCAGAGGGGTGGGATGCGCAAGCC-AGGGATCAGCTGGGTC
428 ACGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGTGGGATGCGCAAGCCGA-GGATCGGCCGGGTC
* ** * * *
15082611 CCTCTCTGCGTGCTACCGATCCTGCTGCCACAACCCATGGTTTGGTCTGATCTTAGACTGGGAAT
492 CC-CTCTGCGTGCTACCGATCCTGCTGCCGCAACCCCCGGTCTGGTCCGATCTTAGAC-CGGAAT
* *
15082676 GAACTCCGTATGCCTAAGCCAACTGACGAAACGA--GCGGGCGGGCGGGCGGGCACTACACCGGC
555 GAACTCCGTATGCCTAAGCCAACTGACGAAACGAGGGCGGGC-GG-GGGCGAGCACTACGCCGGC
* * * *
15082739 CAGAGAGACAGGATGCACAAGCTGTGGATCGATAGGGTGGTAGGTAGGTTTAGGCACATCTTCAT
618 CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCAT
* *
15082804 ATTTCTGTGTGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCCTTAAGCCTTGAC
683 ATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCAC
* * ** * *
15082869 GTGAAGTTTCATGGCAAGATGACTCGTTTTGTGTTTTTCATGATTTTCAAAACTTTCTGCGGTTC
748 GTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTC
* * * * *
15082934 AGGATTTTTTAAAATTTTTTTAGAATG-AGTTTTGGCCTCAAACAT-GGTAGACTTGATCCTTGT
813 AAGATTTTTTTAAATTTTTTT-GAAAGAAGTTTTGGCCCCAAAC-TGGGTAGACGTGATCCTTGT
15082997 ATTTTTGT
876 ATTTTTGT
* * *
15083005 TGGCATGCACAAAAAAATTCAACTAAAAACTCGAGGTGTACAAGATTTTGTGATCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
15083070 AGTGTCCCCATTTCAGACACTTTAGTGGCTACTGCCAGCAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
15083135 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGAT----G--A--GGG---ATAT-GGGGCCAAGTACCAG
* * * * *
15083200 CACTCATCGCACATCATGTGCGAACACCCCCCGGCCCCCTGATTGCTGGAACCCCAATA-CCGCC
184 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCG-TCGAACCCCAA-AGCCGCC
* * * * ** * ** * *
15083264 AATAAGGTTCTCCGACGTTGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCAGCACCAACACA
247 AGTCAGGTTCTCCGACGATGCTCTGGTGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACA
* * * * *
15083329 TGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCGGTCCGATCTTAGACTAGGAATGAACT
312 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACT
* * * *
15083394 CCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGC
377 CCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGC
* * * * * * *
15083459 GCTAAGCCGGCCAGAGGGGTGGGATGCGTAAGCCGGGGATCGGTCGGGTACCTCTCTGCGTGCTG
442 GCTCAGCAGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCGGCCGGGT-CCCCTCTGCGTGCTA
* ** * * * * *
15083524 CTGATCCTGCTGCTACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGCATGCAT
506 CCGATCCTGCTGCCGCAACCCCCGGTCTGGTCCGATCTTAGAC-CGGAATGAACTCCGTATGCCT
* * * * *
15083589 AAGCCAACAGACGAAACGAGCGCCGGGCGGGCCAAGGCGGGCACTACGCC-GCCAGAAAGATGGG
570 AAGCCAACTGACGAAACGAG-GGCGGGCGGG----GGCGAGCACTACGCCGGCCAGAGAGACGGG
*
15083653 AAAGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
630 -ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTG
*
15083718 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTAA
694 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* * * * * ** ** * *
15083783 TGGCAAGATGACTCATTTTGTATTTTTCACGA-TTTTCAAAATTTTTGTGGTTCGGGATCTTTTA
759 TGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTT
* * * *
15083847 AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTGTTTTTGTT
824 AAATTTTTTTGAAAGAAGTTTTGGCCCCAAACTGGGTAGACGTGATCCTTGTATTTTTG-T
15083908 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
15083973 AGTGTCCACATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
**
15084038 TAAGGGGGCCTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAAGTACCAGCACCCATCGCAC
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAAGTACCAGCACCCATCGCAC
* * * *
15084103 ATCATGGGCGCACACCCCCCGGCCCCCCGATCATCGAAACCCCAAAGTCGCCAGTCAGGTTCTTC
196 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG-AACCCCAAAGCCGCCAGTCAGGTTCTCC
*
15084168 GACGATGCTCTGGTAATGGTG-CCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
260 GACGATGCTCTGGTGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
15084232 CATGTGCTACCGTAACCCTCGATCCGGTTTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
325 CATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* *
15084297 ATGGGAATGAACTTCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGCAGGCCA
390 CTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCA
* * * *
15084362 GAAGGGTGGGATGCGCAAGCCGACGATCGGCCGGGTCGCCCTCTGTGTGCTACCGATCTTGCTGC
455 GAGGGGTGGGATGCGCAAGCCGAGGATCGGCCGGGTC-CCCTCTGCGTGCTACCGATCCTGCTGC
* * *
15084427 CGCGACCCCCGGTCTGGTCCGATCTTAGACCGGAATGAACACCGTATGCCTAAGCCAACTGATGA
519 CGCAACCCCCGGTCTGGTCCGATCTTAGACCGGAATGAACTCCGTATGCCTAAGCCAACTGACGA
* * *
15084492 AACGAGGGCGGCGCGTGGGCGATCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
584 AACGAGGGCGG-GCGGGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATC
15084557 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTT-TGGC
648 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGC
* * *
15084621 TTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCCTGGCAAGACGACTCGTTTT
713 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTT
*
15084686 CTATTTTTCATGATTTTTTGAAACTTTTTACGATTCAAGATTTTTTTAAATTTTTTTGAAAGAAG
778 CTATTTTTCATGA-TTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTTGAAAGAAG
15084751 TTTTGGCCCCAAACTGGGTAGACGTGATCCTTGTATTTTTGT
842 TTTTGGCCCCAAACTGGGTAGACGTGATCCTTGTATTTTTGT
* * * *
15084793 TGGCATGCACAAAAAAATTCATCTAAAAACACGAAGTGTACAAGATTTTATGACCATTTGAATAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * * * *
15084858 AGTGTCCCCACTTCAAACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTTAAAAGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* *
15084923 TAAGGGAGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGAT----G--A--GGG---ATAT-GGGGCCAAGTACCAG
* *
15084988 CACCCATCGCAAATCATGTGCGCACACCGCCCC-GCCCCCCGATCGTCGAACCCCAAAGCCGCCG
184 CACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCGATCGTCGAACCCCAAAGCCGCCA
* *** * **
15085052 GTCAGGTTCTCCGGCGATGCTCCAACT-ATGGTGCCCCGGTGAAGAAAAATGCTACACCAGCACA
248 GTCAGGTTCTCCGACGATGCT-CTGGTGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACA
* ** * * *
15085116 TGCCCGAG-CCAGCATGTGCTGCCACAACCCTC-AGTCCAATCCGATCTTATACTGGAAATGAAC
312 TGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGA-TCCGGTCTGATCTTAGACTGGGAATGAAC
** * *
15085179 TCCACATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCGTGCGGG
376 TCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
*
15085244 CGCTCAGTC-GGCCAGAGGGGTGGGATGCGCCAA-CCGAGGAT---CC-GGTCACCTTCTGCGTG
441 CGCTCAG-CAGGCCAGAGGGGTGGGATGCG-CAAGCCGAGGATCGGCCGGGTC-CCCTCTGCGTG
** * * * * * * *
15085303 CTGTCAATCCTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGAATGAACTCCGTATGC
503 CTACCGATCCTGCTGCCGCAACCCCCGGTCTGGTCCGATCTTAGACCGGAATGAACTCCGTATGC
* * * * *
15085368 CTAAG-CAACCGACGAAAC-A-AGCGGGC-----AG-GCACTATGCCGACCAGAGAGACGGG-TG
568 CTAAGCCAACTGACGAAACGAGGGCGGGCGGGGGCGAGCACTACGCCGGCCAGAGAGACGGGATG
*
15085423 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAA
633 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAA
**
15085488 TGCCATTTTTATCACTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
698 TGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
* * *
15085553 AAGATGACTTC-TTTTCTATTTTTCACGATTTTTGAAACTTTTTGA-GGTTCAA-AATTTTGTAA
763 AAGATGAC-TCGTTTTCTATTTTTCATGATTTTTGAAACTTTTT-ACGGTTCAAGATTTTTTTAA
* * ***
15085615 AATTTTTTGAAAGGAGTTTTGGCCCCAAACTTAATAGACGTGATCCTTGTATTTTTGT
826 ATTTTTTTGAAAGAAGTTTTGGCCCCAAACTGGGTAGACGTGATCCTTGTATTTTTGT
* *
15085673 TGGCACGCACAAAAAAATTCAGGTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* * *
15085738 AGTGTTCACATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
**
15085803 TAAGGGGGCCTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAAGTACCAGCACCCATCGCAC
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAAGTACCAGCACCCATCGCAC
* * * *
15085868 ATCATGGGCGCACACCCCCCGGCCCCCCGATCATCGAAACCCCAAAGTCGCCAGTCAGGTTCTTC
196 ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCG-AACCCCAAAGCCGCCAGTCAGGTTCTCC
15085933 GACGATGCTCTGGTGATGGTG-CCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
260 GACGATGCTCTGGTGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAG
* * *
15085997 CATGTGCTACCGTAACCCTCGATCCGGTTTGATCTTAGA-TGGGAATGAACTCCGTATGCTTAGA
325 CATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* *
15086061 ATGGGAATGAACTTCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGGCGCTCAGCAGGCCA
390 CTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCA
* * * * *
15086126 GAAGGGTGGGATGCGCAAGCCGACGATCGGCCGGGTCACCCTCTGTGTGCTACCCATCTTGCTGC
455 GAGGGGTGGGATGCGCAAGCCGAGGATCGGCCGGGTC-CCCTCTGCGTGCTACCGATCCTGCTGC
* ** * * *
15086191 TGTGA-CCCCGGTCT-GTCCGATCTTAGACCGGGAATGAACACCATATGCCTAAGCCAACTGATG
519 CGCAACCCCCGGTCTGGTCCGATCTTAGACC-GGAATGAACTCCGTATGCCTAAGCCAACTGACG
* *
15086254 AAACGAGCGGGCGGGCGGGCTGGCGATCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTG
583 AAACGA--GGGCGGGCGGG--GGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
*
15086319 GATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
644 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA
* * *
15086384 TGGCTTGTAAATTCATACAATGGTCCATTAAGCCTTCACGTGAAGTTTCCTGGCAAGACGACTCG
709 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCG
*
15086449 TTTTCTATTTTTCATGATTTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTTGGAA
774 TTTTCTATTTTTCATGA-TTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTTGAAA
15086514 GAAGTTTTGGCCCCAAACTGGGTAGACGTGATCCTTGTATTTTTGT
838 GAAGTTTTGGCCCCAAACTGGGTAGACGTGATCCTTGTATTTTTGT
* * * *
15086560 TGGCACGCACAAAAAAATTTAGGTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAA
1 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* **
15086625 AGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAAAAAACCTGTAAAATCTCAAATGCTCTT
66 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* * *
15086690 TAAGGGGGTTTGAGTTCTTGAGGTTTGATGAGGGATAAGAGGCCAATAGAAATACCAAGTACCAG
131 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATG-GG------G-----CCAAGTACCAG
* * * * * *
15086755 CACCCATCGCACATCTTGTGCACACA-CCCCTGGCCCCCCGATCGTCGGAACCCCAATGCCACCG
184 CACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTC-GAACCCCAAAGCCGCCA
* * ** * *
15086819 GTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCTGATGAAGAAAAATGGGGCACCAGCACAT
248 GTCAGGTTCTCCGACGATGCTCTGGTGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACAT
* * * *
15086884 TCCCAAGCCCAACATGTGCTGCCGCAACCCTCGATCCGATCTGATCTTAGACTGGGAATGAACTC
313 GCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTC
*
15086949 TGTATGC
378 CGTATGC
15086956 CTAAGCCAAC
Statistics
Matches: 3442, Mismatches: 402, Indels: 220
0.85 0.10 0.05
Matches are distributed among these distances:
867 8 0.00
868 194 0.06
869 76 0.02
870 13 0.00
871 29 0.01
872 42 0.01
873 1 0.00
874 1 0.00
876 7 0.00
880 203 0.06
881 97 0.03
882 95 0.03
883 4 0.00
884 98 0.03
885 385 0.11
886 112 0.03
887 217 0.06
888 8 0.00
889 45 0.01
890 234 0.07
891 103 0.03
892 75 0.02
893 5 0.00
894 1 0.00
895 4 0.00
896 180 0.05
897 96 0.03
898 347 0.10
899 141 0.04
900 53 0.02
901 46 0.01
902 103 0.03
903 387 0.11
904 1 0.00
906 21 0.01
908 3 0.00
911 4 0.00
912 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (883 bp):
TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATATGGGGCCAAGTACCAGCACCCATCGCAC
ATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAACCCCAAAGCCGCCAGTCAGGTTCTCCG
ACGATGCTCTGGTGATGGTGCCCTGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
ATGTGCTGCCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCAGGCCAG
AGGGGTGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCTCTGCGTGCTACCGATCCTGCTGCCG
CAACCCCCGGTCTGGTCCGATCTTAGACCGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAA
CGAGGGCGGGCGGGGGCGAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTG
TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTA
TTTTTCATGATTTTTGAAACTTTTTACGGTTCAAGATTTTTTTAAATTTTTTTGAAAGAAGTTTT
GGCCCCAAACTGGGTAGACGTGATCCTTGTATTTTTGT
Found at i:15086058 original size:25 final size:26
Alignment explanation
Indices: 15086030--15086081 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15086020 CCGGTTTGAT
15086030 CTTAG-ATGGGAATGAACTCCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
*
15086055 CTTAGAATGGGAATGAACTTCGTATG
1 CTTAGAATGGGAATGAACTCCGTATG
15086081 C
1 C
15086082 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 5 0.20
26 20 0.80
ACGTcount: A:0.29, C:0.15, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGAATGGGAATGAACTCCGTATG
Found at i:15087968 original size:26 final size:26
Alignment explanation
Indices: 15087930--15087982 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15087920 CCGGTTCGAT
*
15087930 CTTAGACTGGGAATGAACTTCT-TATG
1 CTTAGACTAGGAATGAA-TTCTGTATG
15087956 CTTAGACTAGGAATGAATTCTGTATG
1 CTTAGACTAGGAATGAATTCTGTATG
15087982 C
1 C
15087983 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
CTTAGACTAGGAATGAATTCTGTATG
Found at i:15088785 original size:899 final size:894
Alignment explanation
Indices: 15087038--15091518 Score: 5607
Period size: 899 Copynumber: 5.0 Consensus size: 894
15087028 ATTATTTCAC
* *
15087038 CTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * * * *
15087103 CAAGCGTGCAGGCGCTCAGCCAGCCAGAGGGGCGGGATGAGCGAGCCGGGGATCGGTCGAGTGCC
66 CGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
* * * * * *
15087168 CCTCTGCGTGCTATCGATTCTGTTGCCGCAACCCTCAG-TCCGGTCCAATCTTAGACTGGGAATG
131 CCTCTGCGTGCTGTCGATCCTGCTACC-AAACCCT-AGTTCAGGTCCAATCTTAGACTGGGAATG
** * * *
15087232 AACTCCGTATGCCTAAGCCAACCGACAAAATGAGTGGGCGGGCAGGCAGGCACTACGTCGACCAG
194 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGC-GG--GGCACTACGTCGGCCAG
*
15087297 AGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
256 AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATT
*
15087362 TTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTGCCC-TAAGCCTTCACGT
321 TCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT-CCCTTAAGCCTTCACGT
** * ** * *
15087426 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTAAACGATTTTCAAAACTTTTTACGGTTTGG
385 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGG
* * **
15087491 GATTTTTCAAAATTTTTTCGGAAGGAGTTTTGGAGCCAAACTTGGTAGACGTGATCCTTGTATTT
450 GATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
* ** *
15087556 TTTTTTTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGA
515 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGA
*
15087621 AAAAAGT-ACCCCTATTTCAGACACTTTAATGGCTACTGGCAGCAAA-CTGTAAAATCTCAAATG
580 AAAAAGTGTCCCC-ATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
15087684 CTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
644 CTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
** * ** *
15087749 ACCAGCACGTATCGCACATCATGTGCGCACACACCCC-CGATCCCCCGATCGCCGGAGCCCCAAT
709 ACCAGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCGATCGCCGGAACCCCAAT
* * * * * * *
15087813 GCTGTCGGTTAGCTTCTTCAACGATGCTCCGGTGATGGTGCCCC-AGCGAAGAAAAATACAGCAG
774 GCCGTCGGTCAG-TTC-TCGACGATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCAC
* * *
15087877 CAGCACATGCCCAAGCCCAGCATGTGCTGCCGCAATCGTCGGTCCGGTTCGATCTTAGA
836 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGA
* * * * * *
15087936 CTGGGAATGAACTTCTTATGCTTAGACTAGGAATGAATTCTGTATGCCTAAGTCAACCCACGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * *
15088001 TGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGCAAGTCGGGGATCGATCAGGTCCC
66 CGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
* * * * * * * *
15088066 CCTCTACGTCCTGTCAATCCTACTATCAAACCCTTGTTCTGATCCAATCTTAGACTGGGAATGAA
131 CCTCTGCGTGCTGTCGATCCTGCTACCAAACCCTAGTTCAGGTCCAATCTTAGACTGGGAATGAA
15088131 CTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGATGGGCGGGTGGGCACTACGTCGGCC
196 CTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGC----GGGC--G-GGGCACTACGTCGGCC
* *
15088196 AGAGAGACGGGAT-CACAA-CTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
254 AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
* *
15088259 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGTCCCTTAAGCCTTGACG
319 TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * **
15088324 TAAAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCTTGATTTTTGAAACTTTTTACGATTTT
384 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCG
* * * ** *
15088389 AGATTTTTT-AATTTTTTTTGGAAGGATTTTTGGCCATAAAGTTGGTAGACGTGATCCTTGTATT
449 GGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
*
15088453 TTTGTTGGCTTGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTG
514 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTG
* * *
15088518 AAAAAAGTGTCCCCATTTCTGACACTTTAATCGCTACTGACAGCAAACCTGTAAAATCTCAAATG
579 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
*
15088583 CTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCATGT
644 CTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * *
15088648 AACAGCACCCATCGCACATCATGTGCGCACAACCCCCCTCGACCACCCCTATCGTCGGAACCCCA
709 ACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCTCGGCC-CCCCGATCGCCGGAACCCCA
** * ** * **
15088713 ATGCCG-CGGTCAGTTCTCGGGTGATACTCTAGCGATGGTGCCCCG-TGAAGAAAAATGCAACAC
772 ATGCCGTCGGTCAGTTCTC-GACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCAC
* * ** * * *
15088776 CAACACATGCCTGAGCCCTTCTTGTGCTGCCGCAACCCTCGATCCGG-TCTGATCTAAGA
836 CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTC-GATCTTAGA
*
15088835 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * *
15088900 TGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGAGGATCG-GCTGGGTCC
66 CGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC-GGGTCC
* * * * * **
15088964 CTCTTTGCATGCTGTCAATCCTGC-AGTCACAACCCTCAGTTCA-GTTGAATCTTAGACTGGGAA
130 CCCTCTGCGTGCTGTCGATCCTGCTA-CCA-AACCCT-AGTTCAGGTCCAATCTTAGACTGGGAA
* * * * * * * *
15089027 TGAACTCCGTACGTCTAAGCCAACTGACGAAACGAGCGGGTGGCGAGCGGGCACTACGCCGACCA
192 TGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGG-GCG-GGGCACTACGTCGGCCA
* *
15089092 GAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGTGTTTAGGCACATCTTCATAT
255 GAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
** * * *
15089157 TTCTGTGTGCGAATGCCATTTTTTTGGCTTGTAAATTCATATAATGGTCCCTTAAGCCTTCACGT
320 TTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* * *
15089222 GAAGTTTCATGGCAAGGCGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTCTGC-AGTTCG
385 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGA-TTCG
* * *
15089286 GGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAAGTTGGTAGACGTGATCCTTGTATT
449 GGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATT
** ** * *
15089351 TTTGTTGGGGTGTGC-AAAAAATTCAGCTAAAAACTCAAAGCGTACAAGATTTTTTGACCATTTG
514 TTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTG
*
15089415 AAAAAGGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
579 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATG
* * ** *
15089479 CTCTTTAAGG-GGTGTGATTTCTCGAGGTTTGATGAGGGATAGTGGTTCAATATAAAGGCCAAGT
644 CTCTTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGT
* * * * *
15089543 ACCAGAAACCCATCACACATCATTTGCGCACA--CCCC-CGGCCCCCCGATC-TC-GAATCCCAA
709 ACCAG-CACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCGATCGCCGGAACCCCAA
*
15089603 TGCCGTCGGTCAGGTTCTC--C-A-------GCGATGGTGCCCCGATGAAGAAAAATGCGGCACC
773 TGCCGTCGGTCA-GTTCTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACC
** * * * * *
15089658 AGCACATGCTTGAGCCTAGCATGTGCTG-CGTAACCCTCGATCCTGTTTGATCTTAGA
837 AGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGA
* *
15089715 C-GGGAATGAACTCCATATGCTTAGACTGAGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* * * * *
15089779 CAAGCGTGCGGGCGCTCAACC-GACTAGAGGGGCGGGATGCACAAGCCGAGGATCGATCGGGTCC
66 CGAGCGTGCGGGCGCTCAGCCAG-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
* ** * * * *** * *
15089843 CCCTCTACGTGCTACCGATCCTGCTACCACAACCTTCGGTCAGGTTTGATTTTTGACTGGGAATG
130 CCCTCTGCGTGCTGTCGATCCTGCTACCA-AACCCTAGTTCAGGTCCAATCTTAGACTGGGAATG
* * * * **
15089908 AACTTCGTATGCCTAAGCCAACCGATGAAA-TA---AGCAGGC-GGGCACTACACCGGCCAGAGA
194 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGGCACTACGTCGGCCAGAGA
* * *
15089968 GATGGGATGCGCAAGCCGTGGATCGATATGGTGGCAGGTGGGTTTAGGCACATCTTCATATTTCT
259 GACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
* *
15090033 GTGA-GCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAA
324 G-CATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAA
* * * **
15090097 GTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAAGAT
388 GTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGAT
* * * * *
15090162 TTTTTAAAATTTTTTCGTATGGAGTTTTGGCCCCAAACTTGGTAGACCTGATCCTTGTATTTTTT
453 TTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTG
* * *
15090227 TTGGCATGCTCAAAAAAAATTCAGCT-ACAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAA
518 TTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAA
* * *
15090291 AAAGTGTCCCCATTTCAGACACTTTAATGGCTAATGGCACCGAACCTGTAAAATCTCAAATGCTC
582 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* * * **
15090356 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATTAGGGATAGGGGACCAATATAAAAGCCAAGTACC
647 TTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * * *
15090421 AGCACCCATCGTACATCATGTGCG--CA-CCCCCTCGGGCCCTTCCGATCACCGGAGCCCCAATG
712 AGCACCCATCGCACATCATGTGCGCACACCCCCCTC-GGCCC-CCCGATCGCCGGAACCCCAATG
* * * * *
15090483 TCGTCGGTCTGGTTCTTCGACGATGGTCCGGCGATGGTGCCTCGACGAAGAAAAATGCGCCACCA
775 CCGTCGGTC-AGTTC-TCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCA
* *
15090548 GCACATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGG-TCTGATCTTAGA
838 GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTC-GATCTTAGA
*
15090605 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCCTATGCCTAAGTCAACCCATGAAA
1 CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
* ** * * * * * * *
15090670 CGAGCGTGCGGGTGCTCAATCGGCCAGAGGGGCGGGAAGCGCAGGTCAGAGTTCGATCGGGTCCC
66 CGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
* * * * * * *
15090735 CTTCTGCGTGCTGTTGATCCTACTACCGTAACCCTCA-ATCCGGTCCGATCTTAGACTGGGAATG
131 CCTCTGCGTGCTGTCGATCCTGCTACC-AAACCCT-AGTTCAGGTCCAATCTTAGACTGGGAATG
*
15090799 AACTCCGTATGCCTAAGACAACCGATGAAACGAGCGGGCGGGC-GGGCACTACGAT-GG-CAGAG
194 AACTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGGCACTACG-TCGGCCAGAG
*
15090861 AGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
258 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC
* *
15090926 TACGTGCCAATGCCATTTTT-TAGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
323 TGCATGCCAATGCCATTTTTAT-GGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
* *
15090990 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTAAAACTTTTTGCGATTCGGGA
387 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGA
* * * * *
15091055 TTTTTTAAAATTTTTTTGGAAGCATTTTTGGCCCCAAACTTGGTAGACTTTATCCTTGTATTTAT
452 TTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTT
* * * *
15091120 GTTGGCCTGCACACAAAAATTTAGTTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAA
517 GTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAA
* * * *
15091185 AAAGTTTCCCCATTGCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCGC
582 AAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC
* **
15091250 TTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTGAATATAAGGGCCAAGTACC
647 TTTAAGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACC
* * *
15091315 AGCACCCATCGCAAATCATGTGCGCACACCCCCCTCGGCCCCCCGATCGCTGGAACCCCAATGTC
712 AGCACCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCGATCGCCGGAACCCCAATGCC
* *
15091380 G-CTGGTCAGGTTCTCGACGATGCTCCGGCGAT-GTGCCTCGACGAAGAAAAATGTGGCACCAGC
777 GTC-GGTCA-GTTCTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* ** * * * *
15091443 ACATGCTCGAGAACAGCATGTGCTGCGGCAACCCTTGGTCTGGTCCGATCTTAGA
840 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGA
*
15091498 CTAGGAATGAACTCCGTATGC
1 CTGGGAATGAACTCCGTATGC
15091519 CTAAGTCAAC
Statistics
Matches: 3108, Mismatches: 397, Indels: 161
0.85 0.11 0.04
Matches are distributed among these distances:
872 261 0.08
873 44 0.01
874 94 0.03
875 60 0.02
876 6 0.00
877 1 0.00
878 27 0.01
879 183 0.06
880 40 0.01
881 41 0.01
882 1 0.00
887 1 0.00
889 70 0.02
890 31 0.01
891 199 0.06
892 6 0.00
893 109 0.04
894 444 0.14
895 126 0.04
896 98 0.03
897 294 0.09
898 341 0.11
899 473 0.15
900 90 0.03
901 44 0.01
902 23 0.01
903 1 0.00
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (894 bp):
CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
CGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
CCTCTGCGTGCTGTCGATCCTGCTACCAAACCCTAGTTCAGGTCCAATCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGGGGCACTACGTCGGCCAGAGAGA
CGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTACGATTCGGGATTTT
TTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGCGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGAGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCTCGGCCCCCCGATCGCCGGAACCCCAATGCCGTCG
GTCAGTTCTCGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
CCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTTCGATCTTAGA
Found at i:15088861 original size:26 final size:26
Alignment explanation
Indices: 15088832--15088881 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15088822 GTCTGATCTA
15088832 AGACTGGGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
15088858 AGACTGGGAATGAACTCCGTATGC
1 AGACTGGGAATGAACTCCGTATGC
15088882 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:15089750 original size:26 final size:25
Alignment explanation
Indices: 15089709--15089760 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15089699 CCTGTTTGAT
*
15089709 CTTAGACGGGAATGAACTCCATATG
1 CTTAGACGAGAATGAACTCCATATG
*
15089734 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGAC-GAGAATGAACTCCATATG
15089760 C
1 C
15089761 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.31, C:0.21, G:0.23, T:0.25
Consensus pattern (25 bp):
CTTAGACGAGAATGAACTCCATATG
Found at i:15090628 original size:26 final size:26
Alignment explanation
Indices: 15090599--15090651 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15090589 CCGGTCTGAT
*
15090599 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
15090625 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
15090651 C
1 C
15090652 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:15093320 original size:26 final size:26
Alignment explanation
Indices: 15093284--15093336 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15093274 CTTGACTTAG
15093284 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15093310 GCATATGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15093336 G
1 G
15093337 ATCAAATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15094533 original size:60 final size:59
Alignment explanation
Indices: 15094398--15094918 Score: 683
Period size: 60 Copynumber: 8.8 Consensus size: 59
15094388 TTTTGTGTAG
* * ***
15094398 GGAAAACTGATACTTTCCAACTTTTCCCCAAAAATA--TTTTTTGAAAATTTATTTTTGA
1 GGAAAATTGATACTTT-CAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCCAA
* * * *
15094456 GGAAAATTGATATTTTCAACTTTTCCTCAAAAATAGTTTTTTTGCAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTT-ATTTCCAA
*** **
15094516 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-CCCTTTTTGAAAATTTATTTATAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCCAA
* * *
15094574 GGAAAATTGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTGAGAATTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTT-ATTTCCAA
*** * *
15094634 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCATTTTTCGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCCAA
15094693 GGAAAATTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAAATTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTTGAAAATTT-ATTTCCAA
*
15094753 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTT-ATTTCCAA
*** *
15094813 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-CCCTTTTTGAAAATTTATTTCTAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCCAA
* *
15094871 GGAAAATTGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTTGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-TTTTTTTTGAAA
15094919 GTTTTGATTT
Statistics
Matches: 405, Mismatches: 48, Indels: 18
0.86 0.10 0.04
Matches are distributed among these distances:
57 18 0.04
58 92 0.23
59 99 0.24
60 195 0.48
61 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.43
Consensus pattern (59 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTATTTCCAA
Found at i:15094834 original size:32 final size:32
Alignment explanation
Indices: 15094741--15094835 Score: 78
Period size: 32 Copynumber: 3.1 Consensus size: 32
15094731 TTTTTGAAAA
15094741 TTTGATTTCCAAGGAAAATTGATACTTTCAAC
1 TTTGATTTCCAAGGAAAATTGATACTTTCAAC
* ** *
15094773 -TT--TTCCTCAA--AAATATT--TTTTTTGAAAC
1 TTTGATTTC-CAAGGAAA-ATTGATACTTT-CAAC
15094801 TTTGATTTCCAAGGAAAATTGATACTTTCAAC
1 TTTGATTTCCAAGGAAAATTGATACTTTCAAC
15094833 TTT
1 TTT
15094836 TCCTCAAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
27 4 0.09
28 6 0.13
29 8 0.18
30 6 0.13
31 8 0.18
32 9 0.20
33 4 0.09
ACGTcount: A:0.33, C:0.15, G:0.09, T:0.43
Consensus pattern (32 bp):
TTTGATTTCCAAGGAAAATTGATACTTTCAAC
Found at i:15094908 original size:118 final size:119
Alignment explanation
Indices: 15094398--15094918 Score: 721
Period size: 118 Copynumber: 4.4 Consensus size: 119
15094388 TTTTGTGTAG
* * * *
15094398 GGAAAACTGATACTTTCCAACTTTTCCCCAAAAATA--TTTTTTGAAAATTTATTTTTGAGGAAA
1 GGAAAATTGATACTTT-CAACTTTTCCTCAAAAATACTTTTTTTGAAAATTTATTTCTAAGGAAA
* * * *
15094461 ATTGATATTTTCAACTTTTCCTCAAAAATAGTTTTTTTGCAACTTTGATTTCCAA
65 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
** *
15094516 GGAAAATTGATACTTTCAACTTTTCCTCAAAAAT-CCCTTTTTGAAAATTTATTTATAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGAAAATTTATTTCTAAGGAAAA
* * *
15094580 TTGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTGAGAATTTGATTTCCAA
66 TTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
* * *
15094634 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATCCATTTTTCGAAAATTTATTTCTAAGGAAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGAAAATTTATTTCTAAGGAAAA
15094699 TTGATACTTTCAACTTTTCC-CTAAAAATATTTTTTTTGAAAATTTGATTTCCAA
66 TTGATACTTTCAACTTTTCCTC-AAAAATATTTTTTTTGAAAATTTGATTTCCAA
* * *
15094753 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAACTTTGATTTCCAAGGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGAAAATTT-ATTTCTAAGGAAA
*** *
15094818 ATTGATACTTTCAACTTTTCCTCAAAAAT-CCCTTTTTGAAAATTT-ATTTCTAA
65 ATTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
* * *
15094871 GGAAAATTGATATTTTCAACTTTTCCTTAAAAATATTTTTTTTTGAAA
1 GGAAAATTGATACTTTCAACTTTTCCTCAAAAATA-CTTTTTTTGAAA
15094919 GTTTTGATTT
Statistics
Matches: 367, Mismatches: 29, Indels: 13
0.90 0.07 0.03
Matches are distributed among these distances:
117 17 0.05
118 163 0.44
119 147 0.40
120 39 0.11
121 1 0.00
ACGTcount: A:0.34, C:0.14, G:0.08, T:0.43
Consensus pattern (119 bp):
GGAAAATTGATACTTTCAACTTTTCCTCAAAAATACTTTTTTTGAAAATTTATTTCTAAGGAAAA
TTGATACTTTCAACTTTTCCTCAAAAATATTTTTTTTGAAAATTTGATTTCCAA
Found at i:15094959 original size:15 final size:14
Alignment explanation
Indices: 15094939--15094983 Score: 54
Period size: 15 Copynumber: 3.1 Consensus size: 14
15094929 TCATTTAAAG
15094939 AAAATAGAATAATAA
1 AAAATA-AATAATAA
*
15094954 AAAATAAATAAAATA
1 AAAATAAATAATA-A
*
15094969 AAAATAAAAAATAA
1 AAAATAAATAATAA
15094983 A
1 A
15094984 GAAAAGTAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
14 8 0.31
15 18 0.69
ACGTcount: A:0.80, C:0.00, G:0.02, T:0.18
Consensus pattern (14 bp):
AAAATAAATAATAA
Found at i:15094965 original size:11 final size:10
Alignment explanation
Indices: 15094946--15095013 Score: 59
Period size: 10 Copynumber: 6.6 Consensus size: 10
15094936 AAGAAAATAG
*
15094946 AATAATAAAA
1 AATAAAAAAA
15094956 AATAAATAAAA
1 AATAAA-AAAA
15094967 TAA-AAATAAAA
1 -AATAAA-AAAA
*
15094978 AATAAAGAAA
1 AATAAAAAAA
*
15094988 AGTAAAACAAA
1 AATAAAA-AAA
15094999 AAT-AAAAAA
1 AATAAAAAAA
15095008 AATAAA
1 AATAAA
15095014 GATGAAAAGA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
9 6 0.12
10 20 0.42
11 20 0.42
12 2 0.04
ACGTcount: A:0.81, C:0.01, G:0.03, T:0.15
Consensus pattern (10 bp):
AATAAAAAAA
Found at i:15094977 original size:22 final size:22
Alignment explanation
Indices: 15094934--15095013 Score: 92
Period size: 22 Copynumber: 3.6 Consensus size: 22
15094924 GATTTTCATT
15094934 TAAAGAAAATAGAATAATAAAAAA
1 TAAAGAAAATA-AA-AATAAAAAA
*
15094958 TAAATAAAATAAAAATAAAAAA
1 TAAAGAAAATAAAAATAAAAAA
*
15094980 TAAAGAAAAGT-AAAA-CAAAAA
1 TAAAGAAAA-TAAAAATAAAAAA
*
15095001 TAAAAAAAATAAA
1 TAAAGAAAATAAA
15095014 GATGAAAAGA
Statistics
Matches: 50, Mismatches: 4, Indels: 7
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.02
21 15 0.30
22 21 0.42
23 3 0.06
24 10 0.20
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.15
Consensus pattern (22 bp):
TAAAGAAAATAAAAATAAAAAA
Found at i:15095000 original size:28 final size:29
Alignment explanation
Indices: 15094939--15095007 Score: 86
Period size: 28 Copynumber: 2.4 Consensus size: 29
15094929 TCATTTAAAG
* *
15094939 AAAATAGAATAATAAAAAATAAATAAAATA
1 AAAATA-AAAAATAAAAAATAAATAAAACA
* *
15094969 AAAATAAAAAATAAAGAA-AAGTAAAACA
1 AAAATAAAAAATAAAAAATAAATAAAACA
15094997 AAAATAAAAAA
1 AAAATAAAAAA
15095008 AATAAAGATG
Statistics
Matches: 35, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
28 19 0.54
29 10 0.29
30 6 0.17
ACGTcount: A:0.80, C:0.01, G:0.04, T:0.14
Consensus pattern (29 bp):
AAAATAAAAAATAAAAAATAAATAAAACA
Found at i:15095428 original size:20 final size:20
Alignment explanation
Indices: 15095403--15095440 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
15095393 GTTGAATATC
*
15095403 GGCCGAATTCTGGAAAATGT
1 GGCCGAAATCTGGAAAATGT
15095423 GGCCGAAATCTGGAAAAT
1 GGCCGAAATCTGGAAAAT
15095441 TTCATCGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.16, G:0.29, T:0.21
Consensus pattern (20 bp):
GGCCGAAATCTGGAAAATGT
Found at i:15095992 original size:29 final size:28
Alignment explanation
Indices: 15095942--15096017 Score: 93
Period size: 29 Copynumber: 2.7 Consensus size: 28
15095932 TAATTAGAAC
* *
15095942 AGATAAATAAAA-AAAAGATATATTA-T
1 AGATAAATAAAATAAAATATATATAATT
15095968 AGGATAAATAAAATAACAATATATATAATT
1 A-GATAAATAAAATAA-AATATATATAATT
15095998 AGATAAATAAAAATAAAATA
1 AGATAAAT-AAAATAAAATA
15096018 AATAAAATAT
Statistics
Matches: 43, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
26 1 0.02
27 11 0.26
28 2 0.05
29 20 0.47
30 9 0.21
ACGTcount: A:0.66, C:0.01, G:0.07, T:0.26
Consensus pattern (28 bp):
AGATAAATAAAATAAAATATATATAATT
Found at i:15096031 original size:22 final size:23
Alignment explanation
Indices: 15096004--15096068 Score: 80
Period size: 22 Copynumber: 2.8 Consensus size: 23
15095994 AATTAGATAA
15096004 ATAAAAATAA-AATAAATAAAAT
1 ATAAAAATAATAATAAATAAAAT
*
15096026 ATAAAATAATAATAATAAATAAATT
1 AT-AAA-AATAATAATAAATAAAAT
*
15096051 AT-AATATAATAATAAATA
1 ATAAAAATAATAATAAATA
15096069 TATAACTATA
Statistics
Matches: 38, Mismatches: 2, Indels: 6
0.83 0.04 0.13
Matches are distributed among these distances:
22 15 0.39
23 5 0.13
24 5 0.13
25 13 0.34
ACGTcount: A:0.71, C:0.00, G:0.00, T:0.29
Consensus pattern (23 bp):
ATAAAAATAATAATAAATAAAAT
Found at i:15096049 original size:44 final size:45
Alignment explanation
Indices: 15095971--15096073 Score: 115
Period size: 44 Copynumber: 2.3 Consensus size: 45
15095961 ATATTATAGG
* *
15095971 ATAAATAAAATA-ACAATATATATAATTAGATAAATAAAAATAAA
1 ATAAATAAAATATAAAATATATATAATTAAATAAATAAAAATAAA
* * *
15096015 ATAAATAAAATATAAAATA-ATAATAA-TAAATAAATTATAATATA
1 ATAAATAAAATATAAAATATAT-ATAATTAAATAAATAAAAATAAA
15096059 AT-AATAAATATATAA
1 ATAAATAAA-ATATAA
15096074 CTATATAAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
43 6 0.12
44 36 0.71
45 9 0.18
ACGTcount: A:0.68, C:0.01, G:0.01, T:0.30
Consensus pattern (45 bp):
ATAAATAAAATATAAAATATATATAATTAAATAAATAAAAATAAA
Found at i:15096073 original size:11 final size:11
Alignment explanation
Indices: 15096000--15096073 Score: 52
Period size: 11 Copynumber: 7.1 Consensus size: 11
15095990 ATATAATTAG
*
15096000 ATAAATA-AAA
1 ATAAATATATA
15096010 ATAAA-ATA-A
1 ATAAATATATA
15096019 ATAAA-ATATA
1 ATAAATATATA
*
15096029 AAATAATA-ATA
1 ATA-AATATATA
* *
15096040 ATAAATAAATT
1 ATAAATATATA
15096051 AT-AATATAATA
1 ATAAATAT-ATA
15096062 ATAAATATATA
1 ATAAATATATA
15096073 A
1 A
15096074 CTATATAAAA
Statistics
Matches: 52, Mismatches: 5, Indels: 13
0.74 0.07 0.19
Matches are distributed among these distances:
9 10 0.19
10 17 0.33
11 19 0.37
12 6 0.12
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (11 bp):
ATAAATATATA
Found at i:15096079 original size:22 final size:21
Alignment explanation
Indices: 15095988--15096092 Score: 74
Period size: 22 Copynumber: 4.9 Consensus size: 21
15095978 AAATAACAAT
15095988 ATATATAATTAGATAAATA-A-A
1 ATATATAA-TA-ATAAATATATA
*
15096009 A-ATAAAATAAATAAA-ATATA
1 ATATATAAT-AATAAATATATA
* * *
15096029 AAATAATAATAATAAATAAATT
1 ATAT-ATAATAATAAATATATA
15096051 ATAATATAATAATAAATATATA
1 AT-ATATAATAATAAATATATA
* *
15096073 ACTATATAAAAATACATATA
1 A-TATATAATAATAAATATA
15096093 CATATTAACA
Statistics
Matches: 67, Mismatches: 9, Indels: 15
0.74 0.10 0.16
Matches are distributed among these distances:
18 1 0.01
19 7 0.10
20 8 0.12
21 9 0.13
22 39 0.58
23 3 0.04
ACGTcount: A:0.66, C:0.02, G:0.01, T:0.31
Consensus pattern (21 bp):
ATATATAATAATAAATATATA
Found at i:15096086 original size:25 final size:25
Alignment explanation
Indices: 15095977--15096086 Score: 73
Period size: 27 Copynumber: 4.2 Consensus size: 25
15095967 TAGGATAAAT
* * * *
15095977 AAAATAACAATATATATAATTAGATA
1 AAAATAATAAAATAAATAA-TATATA
* *
15096003 AATAAAAATAAAATAAATAAAATAT-
1 AA-AATAATAAAATAAATAATATATA
15096028 AAAATAATAATAATAAATAA-ATTATA
1 AAAATAATAA-AATAAATAATA-TATA
*
15096054 ATATAATAAT-AAATATATAACTATATA
1 A-A-AATAATAAAATAAATAA-TATATA
15096081 AAAATA
1 AAAATA
15096087 CATATACATA
Statistics
Matches: 68, Mismatches: 8, Indels: 17
0.73 0.09 0.18
Matches are distributed among these distances:
24 8 0.12
25 18 0.26
26 15 0.22
27 20 0.29
28 7 0.10
ACGTcount: A:0.67, C:0.02, G:0.01, T:0.30
Consensus pattern (25 bp):
AAAATAATAAAATAAATAATATATA
Done.