Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 78 of 195
Found at i:15096177 original size:9 final size:9
Alignment explanation
Indices: 15096165--15096199 Score: 52
Period size: 9 Copynumber: 3.9 Consensus size: 9
15096155 AAAATACAAA
15096165 AAAAAAAAG
1 AAAAAAAAG
* *
15096174 AAAAATAAT
1 AAAAAAAAG
15096183 AAAAAAAAG
1 AAAAAAAAG
15096192 AAAAAAAA
1 AAAAAAAA
15096200 ATAATACAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.89, C:0.00, G:0.06, T:0.06
Consensus pattern (9 bp):
AAAAAAAAG
Found at i:15096178 original size:20 final size:18
Alignment explanation
Indices: 15096162--15096200 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
15096152 CATAAAATAC
15096162 AAAAAAAAAAAGAAAAAT
1 AAAAAAAAAAAGAAAAAT
*
15096180 AATAAAAAAAAGAAAAA-
1 AAAAAAAAAAAGAAAAAT
15096197 AAAA
1 AAAA
15096201 TAATACAAAG
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 3 0.16
18 16 0.84
ACGTcount: A:0.90, C:0.00, G:0.05, T:0.05
Consensus pattern (18 bp):
AAAAAAAAAAAGAAAAAT
Found at i:15096187 original size:22 final size:23
Alignment explanation
Indices: 15096157--15096209 Score: 83
Period size: 22 Copynumber: 2.3 Consensus size: 23
15096147 AAACACATAA
15096157 AATACAAAAAAA-AAAAGAAAAAT
1 AATACAAAAAAAGAAAA-AAAAAT
15096180 AATA-AAAAAAAGAAAAAAAAAT
1 AATACAAAAAAAGAAAAAAAAAT
15096202 AATACAAA
1 AATACAAA
15096210 GTAAAAATTG
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
22 17 0.61
23 11 0.39
ACGTcount: A:0.83, C:0.04, G:0.04, T:0.09
Consensus pattern (23 bp):
AATACAAAAAAAGAAAAAAAAAT
Found at i:15096210 original size:19 final size:19
Alignment explanation
Indices: 15096165--15096203 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
15096155 AAAATACAAA
*
15096165 AAAAAAAAG-AAAAATAAT
1 AAAAAAAAGAAAAAAAAAT
15096183 AAAAAAAAGAAAAAAAAAT
1 AAAAAAAAGAAAAAAAAAT
15096202 AA
1 AA
15096204 TACAAAGTAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
18 9 0.47
19 10 0.53
ACGTcount: A:0.87, C:0.00, G:0.05, T:0.08
Consensus pattern (19 bp):
AAAAAAAAGAAAAAAAAAT
Found at i:15096592 original size:26 final size:26
Alignment explanation
Indices: 15096550--15096602 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15096540 GTTGACTTAG
*
15096550 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
* *
15096576 GCATACGGAATTGATTCCTAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
15096602 G
1 G
15096603 ATCAGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:15098102 original size:901 final size:897
Alignment explanation
Indices: 15096285--15103937 Score: 9131
Period size: 901 Copynumber: 8.6 Consensus size: 897
15096275 GGTGTCTACA
* * *
15096285 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTCTTTGGCCGGCGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
*
15096350 AGTG-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTC
66 AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * *** *
15096414 TAAGATCAGACCGGATCGAGTGTTGCGGCAGCAAGAACGGCAACATATAGAGGGGGACCCGGTTG
131 TAAGATCAGACCAGATCGAGGGTT-CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCG
* * *
15096479 ATCCCCGGCTTGCGCATCCTGCCCATCTGGCCGACTGAGCGTCTGCACGCTCGTTTCGTGGGTTG
195 ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
* * *
15096544 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAATTGATTCCTAGTCTAAGATCAGA
259 ACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
15096609 CTGGACCGAGGGTTGCGCCAGCACATGCTGGGCTCGAGCATGTGCTGGTGTCGCTTTTTTCTTCG
324 CTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * * * * * *
15096674 TTGGGGCACAATCG-TCAGAGCATTGCTGGAGAACCTGACCGACGACATTGGGGTTCCAATGATC
389 -TCGGGCACCATCGCT-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
* * * *
15096738 GTGGGGGCCCGGGCGGGTGTGTGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATATTG
452 GAGGGGG-CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* * * *
15096803 GCCCCCTATCCATCATCAAACCTTGAGAACTCGCACCCCCTTAAAAAGCATTTGAGATTTTACAG
516 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
15096868 GTTTGCTACCAGTAGCCATTAAAGTGTTTGAATTGTGGACACTTTTTTCAAATGGTCACAAAATC
581 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
15096933 TTGTACACTTCGAGTTTATAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAGGGATCACGTC
646 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
15096998 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAGCTTGAACCGCAAAAAGTTT
711 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
* * *
15097063 CAAAAATCGTGAGAAATAGAAAATGAGTCGGCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
776 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
15097128 CCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
841 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGAT
* * * * *
15097185 GTGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGTAGCCTGTCTCTTTGGCCGACGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
*
15097250 AGTGCCCGCTCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
66 AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * *
15097315 TAAGATCAGATCGGATCGAGTGTT-GGTAGCAGGATCGACAACACGTAGAGGGGGACCCGGTTGA
131 TAAGATCAGACCAGATCGAGGGTTCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGA
* * *
15097379 TCCTCAGCTTACGCATCCTGCCCCTCTGGCCAGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
196 TCCCCGGCTTGCGCATCCTGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
*
15097444 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCCAAGATCAGAC
260 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
*
15097509 TGGACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
325 TGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGT
* * **
15097574 CGGGCCAACATCGCTAGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGTGATCGA
390 CGGG-CACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGA
*
15097639 GGGGGCCGGGGTGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTA
454 GGGGGCC--GG-GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
15097704 GCCCCTTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTAAGATTTTACAG
516 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * *
15097769 GTTTGCTGCCAGTAGCCATTGAAGTGTTTGAAATGGGGACACTTTTTTGAAATGGTCACAAAATC
581 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * * *
15097834 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGCGCATACCAACAAAAACACAGGGATCGCGTC
646 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* ** * *
15097899 TACCAAGCTTGGGGCCAAAACTCCTTCAAAAAAAATTTTCAAAAATCCTAAACCGCAAAAAGTTT
711 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
* *
15097964 TAAAAAT-GATGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
776 CAAAAATCG-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * *
15098028 ACCATTGTATGAGTTTACAAGCCATAAAAATGGCAATGGCATGAAGAAATATGGAGAT
840 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGAT
*
15098086 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * * **
15098151 AGTGCCTGCCCGCCCGTCCGCTTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCAATCTTAGTC
66 AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** * * * **
15098216 TAAGATTGGACCAGACCGAGGGTTGCGGTAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCG
131 TAAGATCAGACCAGATCGAGGGTT-CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCG
* * * * * *
15098281 ATCCCCGGTTTACGCATCCCGCCCTTTTGGCCGGCTGAGCGCCCGCGCGCTCG-TTCTGTGGGTT
195 ATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTC-GTGGGTT
* *
15098345 AACTTAGGCATACGGAGTTCATT-CC---C--AG---ACGAAG---A-T--C-G-----GAT---
258 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * *
15098386 -C-GGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTC
323 ACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * ** * *
15098449 GTCGGG-------GC---AGCATCGTCGGAGAACCTGACTGATGACATTTGGGTTCCGACGATC-
388 GTCGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * *
15098503 AGGGGGGTCGGGGGGG-GATTGCACACATGATGTGCGATGGGTGCTGGTATTTGGCCCTTATATT
453 A-GGGGGCCGGGGGGGTG--TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* *
15098567 GGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCACCTTAAAGAGCATTTGAGA-TTTACA
515 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
*
15098631 GGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
580 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
15098696 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCACGCCAACAAAAATACAAGGATCATGT
645 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
** **
15098761 CTA-CAAGTTTGGGGCCAAAAC-CACTTCCGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGT
710 CTACCAAGTTTGGGGCCAAAACTC-CTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGT
15098824 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
774 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
15098889 GACCATTGTATGAATTAACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
839 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGAT
* * * *
15098948 GTGCCTAAACCCATCTACCACCCTATCGATCCATGGCTTGCACATCCCGTCTCTCTGGCCGGCGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
** * * * *
15099013 AGT----AACCGCCCGTCCGCTCGTTTCGTCGGTTGGCTGAGGCATGCGGAGTTCATTCCGAGTC
66 AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** ** * * * * *
15099074 TAAGATC-GAACTGGATCGAGGGTTGCGACAGTAGGATCGACAGCATGTAGAGGGGGACCTGGTC
131 TAAGATCAG-ACCAGATCGAGGGTT-CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTC
** * * *
15099138 GATCCCCGGCTTGCGCATCCTATCCCTCTGTCCGACTGAGTGCCCGCACGCTCGTTTCGTTGGTT
194 GATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * *
15099203 GACTTAGGCATACGGAGTTCATTCCCGGTCTAAGCTTACGGAGTTCATTCCCAGTCTAAGATCGG
258 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * * *
15099268 ACCGAACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGCATGAGCTGGTGCTGCATTTTTCTTC
323 ACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * * * *
15099333 ACCGGGGCACCATCGCCGGAGCATCACCGAAGAACCTGAACCGACGGCATTGGGGTTCCGACGTT
388 GTC-GGGCACCATCGCTGGAGCATCGCCGGAGAACCTG-ACCGGCGGCATTGGGGTTCCGACGAT
* *
15099398 CGAGGGGGCC-GGGGGGTGTGCGCACCTGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTG
451 CGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
15099462 G-CCCCTATCCCTCATCAAACCTCGAGAA-TAAACACCCCCTTAAAGAGCATTTGAGATTTTACA
516 GCCCCCTATCCCTCATCAAACCTCGAGAACT-CACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
15099525 GGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATAGGGACACTTTTTTCAAATGGTCACAAAAT
580 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
15099590 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATTATGT
645 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
15099655 CTACCAAGTTTGGGGCCAAAAATCCTTTCAAAAAAATTTTAAAAAAT-CTCGAACCGCAAAATGT
710 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGT
* *
15099719 TTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
774 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
*
15099784 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA-CATAGAAATATGAAGAT
839 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGA-AGAAATATGAAGAT
* * *
15099843 GTGCCTAAACCCACCTACCACCCTAACGATCCACGGCTTGCGCATCCCGTCTATCTGGCCGGCGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * * *
15099908 AGTGCCTGCCCTCCCGCCCGCTCGCCCGTTCGTTTCATCGGTTGGCTGAGGCATACGAAGATCAT
66 A--G--TG----CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * *
15099973 TCCCAGTCTAAGAT-AGGATCAGACCGAGGGTTGCGGCAGCTGGATCGGTAGCACACAGAGGGGG
123 TCCCAGTCTAAGATCA-GACCAGATCGAGGGTT-CGGTAGCAGGATCGGCAGCACGCAGAGGGGG
* * * * * * *
15100037 ACCCGATCGATCACTGGCTTGCGCATCCCGCCCCTCGGGCCTGCTGAGCGTCCGCACGCTTGTTT
186 ACCCGGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTT
* * *
15100102 CATAGGTTGACTTAGGCATACGAAGTTCATTCCCAG----A-C-TA---AG---A-T--C-G---
250 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *
15100148 -A-A-C---C-GGACCGAGGGTTGTGGCAACACATGCTAGGCTCGGGCATGTGCTGGTGCCGTAT
315 AAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * * *
15100206 TTTTCTTCG-CAGGGTCACTATCGCCGGAGCATCGCCGGAGAACCTGACCAGCGACATTGGGGTT
380 TTTTCTTCGTC-GGG-CACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
* * *
15100270 TCGACGATCG-GGGAGTC-----GG-G-G-G-----G-TGTGC-A------C----A-------C
443 CCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
**
15100302 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTGCACCCCCTTAAAGAGCATTTGAGA
508 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
15100367 TTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
573 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
15100432 ACAAAATCTTGTACACTTCTAGTTTTTCA-CTGAATTGTTTTGTGCATGCCAACAAAAATACAAG
638 ACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* *
15100496 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCGT
702 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGC
* * * *
15100561 AAAAAGTTTCAAAAATCGTGAGAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAGG
767 AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
15100626 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
832 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGA
15100691 T
897 T
** * *
15100692 GACCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAGCCCGTCTCTTTGGCCGACGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
*
15100757 AGTGCCCGCCCGCCCGCCCGCT--TATTCGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGT
66 AGTGCCCGCCCGCCCGCCCGCTCGT-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * * * * * *
15100820 CTAAAATCGGACCAGA-CTGAGGGTTGCGATAGTAGGATTGGCAGCATGCAGAGGGGGACCCAGT
130 CTAAGATCAGACCAGATC-GAGGGTT-CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGT
* * * ** * * ** *
15100884 CGATGCCCGGCTTGCGCAT-GTCGCCCTTCTACCCGACTGAGCACCCACACATTCGTTTCATGGG
193 CGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCGTGGG
* *
15100948 TCGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGCATA
256 TTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--AG--CA-T---A--C---G----
* * * * * *
15101013 CGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAACACATCCTGGGTTCAGG
298 -GAGTTCATTCCCAGTCTAAGATCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGG
*
15101078 CATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCG-TCGGAGCATCGCCGGAGAACCTG
362 CATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCGCT-GGAGCATCGCCGGAGAACCTG
* * * * *
15101142 ACCGGCTGCATTGGGGTTCTGGCGAAT-GGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCAAT
425 ACCGGCGGCATTGGGGTTCCGACG-ATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGAT
* * *
15101205 CGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACTC
489 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCC
* *
15101270 CCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGG
554 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
*
15101335 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCA
619 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCA
* * * * *
15101400 TGCCAACAAAAATACAAGGATCATGTATACTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAGTT
684 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * *
15101465 TAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCA
749 TAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
** *
15101530 TGAAACTTCACACGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGG
814 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
15101595 CATGAA-AAATAAGAAGAT
879 CATGAAGAAATATGAAGAT
* * * *
15101613 GTGCCT-AA-CCACCTA-CACCCTATCGATCCACGGC-TGTGCATCCCGTCTCTCTAGTCGACAT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * *
15101674 AGTGCACGCCCACCCG--C-C-CGTTTCGTCGGTTTGGCTTAGGCATACCGGAGTTCATTCCTAG
66 AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG-TTGGCTTAGGCATA-CGGAGTTCATTCCCAG
* *
15101735 TCTAAGATCAGACCAGA-CTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCC-G
129 TCTAAGATCAGACCAGATC-GAGGGTT-CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* * * * * *
15101798 ACTGATCCCCGGCTTGCGCATCCTGCCCTCTCCGTCGGCTGAGCGCCCGCACGCTCATTTCATGG
192 TC-GATCCCCGGCTTGCGCATCCTGCCC-CTCTGGCCGCTGAGCGCCCGCACGCTCGTTTCGTGG
* * ** * *
15101863 GTTGACTTAGGCACACAGAGTTTGTTCCCAGTCTAAGCATACGGAGTTCATTCCTAAG-CTAGGA
255 GTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC-CAGTCTAAGA
* * * * * * *
15101927 TCGGACTAGATCGAGTGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATTTTT
319 TCAGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* * * * **
15101992 CTTCGCCGGG-------GC---ACCATCG-CGGAG-ACCTGATCGACGGCATTGGGGTTTTGACG
384 CTTCGTCGGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * *
15102045 TTCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCCCTTATA
449 ATCGAGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * * * *
15102110 TTGACCCCCTTTCCCTCATCAAACCTCGAGATCTCATACCCCTTTAAAGAGCATTTGAGATATTA
513 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
15102175 CAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGTCACAAA
578 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
15102240 ATCTTATACACTTTGAGTTTTTAGTTGAATTTTTTTGTGCAGGCCAAAAAAAATACAAGGATCAC
643 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* ** * *
15102305 GTCTACCATGTTTGGGGTGAAAACTCCTT-CGAAAAAAATTTTAAAAAATCCCGAACCGTAAAAA
708 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCCTGAACCGCAAAAA
* *
15102369 GTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTCAA
772 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
15102434 GGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
837 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGAT
* * * * * **
15102495 GTACCTAAACCCACCTACCACCCAATCGATCCATGGCTTGCACATCCTGTCTCTCTCTCC-AGCG
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CG
** * **
15102559 TAGTGCCCGCCCGGTCGCCCGCTCGTTTTGTTTGTTGGCTTAGGCATAC-GATGTTCATTCCCAG
65 TAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATTCCCAG
* ** *
15102623 TCTAACATCAGACCAGATCGAGGGTT-GTGATAGCAGGATCAACAGCACACAGAGGGGGACCCGG
129 TCTAAGATCAGACCAGATCGAGGGTTCG-G-TAGCAGGATCGGCAGCACGCAGAGGGGGACCCGG
* ** * * * *
15102687 TCGATCCCCGGCTTACATATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGTTCATTTCGTGGG
192 TCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCC-GCTGAGCGCCCGCACGCTCGTTTCGTGGG
* * *
15102752 TTCACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAAGATC
256 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
* * * * * *
15102817 AGACCGGACCAAGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTCGTGCCACATTTTTCT
321 AGACTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
15102882 TCGTCGGGGCACCATCG-TCGGAGCATCACCGAAGAACCTGAGCGGCGACATTGGGGTTCTGACG
386 TCGTC-GGGCACCATCGCT-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
15102946 ATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
449 ATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* * *
15103010 TGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCGTAAAGAGCATTTCAGATTTTAC
514 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
*
15103075 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCACAAAA
579 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * *
15103140 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTTCCAAAAAAAATACAAGGATCACG
644 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
*
15103205 TCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTCAAAAAAT-CTCGAACCGCAAAAA
709 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCT-GAACCGCAAAAA
** * * *
15103269 GTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAG
772 GTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
15103334 GGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGAT
837 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGAT
* * * * * *
15103395 GTGCCTAAACCCGCCTACCACCCTATCGATCCACCGCTTACGCATGCCGTCTCTCTGGCCGATGC
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* *
15103460 AGTGCCCGCTCGCCTGTCCGCCCGCTCGTTTCGTCGGATGGCTTAGGCATACGGAGTTCATTCCC
66 AGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * **
15103525 AGTCCAAGATCAGACC-GAATCGAGGGTTACGGTAGTAGGATGGGTAGCGTGCAGAGGGGGACCA
127 AGTCTAAGATCAGACCAG-ATCGAGGGTT-CGGTAGCAGGATCGGCAGCACGCAGAGGGGGACC-
* * * * *
15103589 C---CGATCCCCGGCTTGCGAAT-CTCGCCTCTCTAGCCGACTGAGCGCCCGTACGCTCATTTCG
189 CGGTCGATCCCCGGCTTGCGCATCCT-GCCCCTCTGGCCG-CTGAGCGCCCGCACGCTCGTTTCG
* * * *
15103650 TGGGTTAACTT-GGACATACGGAGTTCATTCTCGGTCTAAG-ATACGGAGTTCATTCTCAGTCTA
252 TGGGTTGACTTAGG-CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* ** * *
15103713 ATATC-GA-TCGGACCGAGGGTTGTTGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACAT
316 AGATCAGACT-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* * ** *
15103776 TTTTCTTCGCCGGAGCACCATCG-TCGGAGCATCGCCGAAGAACCTGACAAGTGGCATTGGGGTT
380 TTTTCTTCGTCGG-GCACCATCGCT-GGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTT
* * * *
15103840 CCGACGATCGAGGGAGCCGAGGGGGGGTATGCACACATGATGTGCGATGGGTGCTGGTACCTGGC
443 CCGACGATCGAGGGGGCC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
15103905 CCTTATATTGGCCCCCTATCCCTCATCAAACCT
506 CCTTATATTGGCCCCCTATCCCTCATCAAACCT
15103938 TGAACACTTT
Statistics
Matches: 5825, Mismatches: 685, Indels: 483
0.83 0.10 0.07
Matches are distributed among these distances:
839 3 0.00
840 154 0.03
841 16 0.00
845 2 0.00
847 1 0.00
848 10 0.00
849 407 0.07
850 3 0.00
852 1 0.00
855 2 0.00
857 3 0.00
858 166 0.03
859 6 0.00
860 1 0.00
861 1 0.00
862 233 0.04
863 132 0.02
864 100 0.02
865 2 0.00
866 49 0.01
867 6 0.00
869 2 0.00
870 1 0.00
871 1 0.00
872 1 0.00
873 4 0.00
874 2 0.00
875 2 0.00
876 1 0.00
877 65 0.01
878 2 0.00
879 42 0.01
880 35 0.01
881 468 0.08
882 20 0.00
883 3 0.00
884 65 0.01
885 23 0.00
886 33 0.01
887 11 0.00
888 221 0.04
889 22 0.00
890 114 0.02
891 14 0.00
892 80 0.01
893 52 0.01
894 182 0.03
895 252 0.04
896 32 0.01
897 6 0.00
898 9 0.00
899 538 0.09
900 390 0.07
901 677 0.12
902 88 0.02
903 184 0.03
904 93 0.02
905 6 0.00
906 3 0.00
907 172 0.03
908 4 0.00
910 2 0.00
911 2 0.00
914 10 0.00
915 18 0.00
916 137 0.02
917 40 0.01
918 19 0.00
919 7 0.00
920 2 0.00
921 16 0.00
922 354 0.06
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCAGATCGAGGGTTCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGGTCGA
TCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACT
GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
GGGCACCATCGCTGGAGCATCGCCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGG
GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAA
ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGAT
Found at i:15099249 original size:26 final size:26
Alignment explanation
Indices: 15099213--15099262 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15099203 GACTTAGGCA
*
15099213 TACGGAGTTCATTCCCGGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
15099239 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15099263 ATCGGACCGA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.22, C:0.26, G:0.22, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:15100995 original size:25 final size:25
Alignment explanation
Indices: 15100957--15101033 Score: 136
Period size: 25 Copynumber: 3.0 Consensus size: 25
15100947 GTCGACTTAG
*
15100957 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
15100983 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
15101008 GCATACGAGTTCATTCCCAGTCTAA
1 GCATACGAGTTCATTCCCAGTCTAA
15101033 G
1 G
15101034 ATCAGACCGG
Statistics
Matches: 50, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
25 44 0.88
26 6 0.12
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:15101474 original size:24 final size:25
Alignment explanation
Indices: 15101443--15101499 Score: 71
Period size: 26 Copynumber: 2.3 Consensus size: 25
15101433 GTTTGGGGCC
*
15101443 AAAAATCCT-TCCGAAAAAAGTTTA
1 AAAAATCCTAACCGAAAAAAGTTTA
* *
15101467 AAAAATCCTAAACCGTAAAAAGTTTC
1 AAAAATCCT-AACCGAAAAAAGTTTA
15101493 AAAAATC
1 AAAAATC
15101500 GTGAAAAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
24 9 0.32
26 19 0.68
ACGTcount: A:0.53, C:0.18, G:0.07, T:0.23
Consensus pattern (25 bp):
AAAAATCCTAACCGAAAAAAGTTTA
Found at i:15103699 original size:25 final size:25
Alignment explanation
Indices: 15103665--15103713 Score: 89
Period size: 25 Copynumber: 2.0 Consensus size: 25
15103655 TAACTTGGAC
*
15103665 ATACGGAGTTCATTCTCGGTCTAAG
1 ATACGGAGTTCATTCTCAGTCTAAG
15103690 ATACGGAGTTCATTCTCAGTCTAA
1 ATACGGAGTTCATTCTCAGTCTAA
15103714 TATCGATCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (25 bp):
ATACGGAGTTCATTCTCAGTCTAAG
Found at i:15103796 original size:900 final size:896
Alignment explanation
Indices: 15100301--15103937 Score: 4508
Period size: 881 Copynumber: 4.0 Consensus size: 896
15100291 GGTGTGCACA
* **
15100301 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTTGCACCCCCTTAAAGAGCATTTGAG
1 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
15100366 ATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
66 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * *
15100431 CACAAAATCTTGTACACTTCTAGTTTTTCA-CTGAATTGTTTTGTGCATGCCAACAAAAATACAA
131 CACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAA
*
15100495 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGAACCG
195 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCG
* * * *
15100560 TAAAAAGTTTCAAAAATCGTGAGAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAG
260 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
*
15100625 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
325 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
** *
15100690 ATGACCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA-GCCCGTCTCTTTGGCCGA
390 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATG-CCGTCTCTCTGGCCGA
* *
15100754 CGTAGTGCCCGCCCGCCCGCCCGCT--TATTCGTCGGTTCGCTTAGGCATACGGAGTTCATTCCC
454 -GCAGTGCCCGCCCGCCCGCCCGCTCGT-TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * *
15100817 AGTCTAAAATCGGACCAGACTGAGGGTTGCGATAGTAGGATTGGCAGCATGCAGAGGGGGACCCA
517 AGTCTAAGATCAGACCAGAATGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCA
* * * * * * * ** *
15100882 GTCGATGCCCGGCTTGCGCATGTCGCCCTTCTACCCGACTGAGCACCCACACATTCGTTTCATGG
582 -CCGATCCCCGGCTTGCGAATCTCGCCCTTCTAGCCGACTGAGCGCCCGCACGCTCATTTCATGG
* *
15100947 GTCGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACGAGTTCATTCCCAGTCTAAGCAT
646 GTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA--AG--CA-T---A--C---G---
* * *
15101012 ACGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAACACATCCTGGGTTC-A
689 --GAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGA
** * * *
15101076 GGCATGTGCTGGTGCCGTATTTTTCTTCGTC-GAGGCACCATCGTCGGAGCATCGCCGGAGAACC
752 -GCATGTGCTGGTGCCACATTTTTCTTCGCCGGA-GCACCATCGTCGGAGCATCACCGAAGAACC
* * *
15101140 TGACCGGCTGCATTGGGGTTCTGGCGAAT-GGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCA
815 TGA-CGGC-GCATTGGGGTTCTGACG-ATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCG
*
15101203 ATCGGTGCTGGTACTTGGCC
877 ATGGGTGCTGGTACTTGGCC
*
15101223 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACTCCCTTAAAGAGCATTTGAG
1 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
15101288 ATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
66 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
15101353 CACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
131 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
* * * * * *
15101418 GATCATGTATACTAAGTTTGGGGCCAAAAATCCTTCCGAAAAAAGTTTAAAAAATC-CTAAACCG
196 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCG
* * **
15101482 TAAAAAGTTTCAAAAATCGTGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACACGAAG
260 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* * *
15101547 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGGATTGGCATG-AAAAATAAGAAG
325 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
* * * *
15101611 ATGTGCCT-AA-CCACCTA-CACCCTATCGATCCACGGC-TGTGCATCCCGTCTCTCTAGTCGA-
390 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATGCCGTCTCTCTGGCCGAG
* *
15101671 CATAGTGCACGCCCACCCG--C-C-CGTTTCGTCGGTTTGGCTTAGGCATACCGGAGTTCATTCC
455 C--AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG-TTGGCTTAGGCATA-CGGAGTTCATTCC
* * ** *
15101732 TAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCC
516 CAGTCTAAGATCAGACCAGAATGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCC
* * * * *
15101797 GACTGATCCCCGGCTTGCGCATC-CTGCCC-TCTCCGTCGGCTGAGCGCCCGCACGCTCATTTCA
581 -ACCGATCCCCGGCTTGCGAATCTC-GCCCTTCT-AGCCGACTGAGCGCCCGCACGCTCATTTCA
* * ** *
15101860 TGGGTTGACTTAGGCACACAGAGTTTGTTCCCAGTCTAAGCATACGGAGTTCATTCCTAAG-CTA
643 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC-CAGTCTA
* * ** * * * * * * **
15101924 GGATCGGACTAGATCGAGTGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGTATT
707 AGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATT
* * * *
15101989 TTTCTTCGCCGGGGCACCATCG-CGGAG----ACC--TG-ATC-GAC-G-GCATTGGGGTTTTGA
772 TTTCTTCGCCGGAGCACCATCGTCGGAGCATCACCGAAGAACCTGACGGCGCATTGGGGTTCTGA
* * *
15102043 CGTTCGGGGGGGCCGGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGAACTTGGCC
837 CGATCGAGGGGGCC-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * * * * *
15102104 CTTATATTGACCCCCTTTCCCTCATCAAACCTCGAGATCTCATACCCCTTTAAAGAGCATTTGAG
1 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
15102169 ATATTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTCCAAATGGT
66 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* * * *
15102234 CACAAAATCTTATACACTTTGAGTTTTTAGTTGAATTTTTTTGTGCAGGCCAAAAAAAATACAAG
131 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
* ** *
15102299 GATCACGTCTACCATGTTTGGGGTGAAAACTCCTT-CGAAAAAAATTTTAAAAAATCCCGAACCG
196 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAAATTTTAAAAAATCTCGAACCG
*
15102363 TAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
260 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
15102428 GCTCAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
325 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
* * * * **
15102493 ATGTACCTAAACCCACCTACCACCCAATCGATCCATGGCTTGCACAT-CCTGTCTCTCTCTCC-A
390 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATGCC-GTCTCTCTGGCCGA
** * **
15102556 GCGTAGTGCCCGCCCGGTCGCCCGCTCGTTTTGTTTGTTGGCTTAGGCATAC-GATGTTCATTCC
454 GC--AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA-GTTCATTCC
* * ** *
15102620 CAGTCTAACATCAGACCAG-ATCGAGGGTTGTGATAGCAGGATCAACAGCACACAGAGGGGGACC
516 CAGTCTAAGATCAGACCAGAAT-GAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACC
** * * * * * *
15102684 CGGTCGATCCCCGGCTTAC-ATATCCCGCCCTTCTGGCCGGCTGAGCGCCCGCACGTTCATTTCG
580 C-ACCGATCCCCGGCTTGCGA-ATCTCGCCCTTCTAGCCGACTGAGCGCCCGCACGCTCATTTCA
* * *
15102748 TGGGTTCACTTAGGCATATGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCAAA
643 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15102813 GATCAGACCGGACCAAGGGTTAC-GACAGCACATGCTGGGCTCGGGCATGTGCTCGTGCCACATT
708 GATCAGACCGGACCGAGGGTTGCAG-CAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATT
* *
15102877 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGAAGAACCTGAGCGGCGACATTGGGGTTCT
772 TTTCTTCGCCGGAGCACCATCGTCGGAGCATCACCGAAGAACCTGA-CGGCG-CATTGGGGTTCT
15102942 GACGATCGAGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
835 GACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
15103003 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCGTAAAGAGCATTTCAG
1 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
15103068 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGT
66 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
15103133 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCTTTCCAAAAAAAATACAAG
131 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
*
15103198 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTCAAAAAATCTCGAACCG
196 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCTCGAACCG
* ** * *
15103263 CAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGGGAAG
260 TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* *
15103328 GCTTAGGGGACCATTGTATGAATTTTCAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
325 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
* * *
15103393 ATGTGCCTAAACCCGCCTACCACCCTATCGATCCACCGCTTACGCATGCCGTCTCTCTGGCCGAT
390 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATGCCGTCTCTCTGGCCGA-
* *
15103458 GCAGTGCCCGCTCGCCTGTCCGCCCGCTCGTTTCGTCGGATGGCTTAGGCATACGGAGTTCATTC
454 GCAGTGCCCG--C-CC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * **
15103523 CCAGTCCAAGATCAGACC-GAATCGAGGGTTACGGTAGTAGGATGGGTAGCGTGCAGAGGGGGA-
515 CCAGTCTAAGATCAGACCAGAAT-GAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGAC
* *
15103586 CCACCGATCCCCGGCTTGCGAATCTCG-CCTCTCTAGCCGACTGAGCGCCCGTACGCTCATTTCG
579 CCACCGATCCCCGGCTTGCGAATCTCGCCCT-TCTAGCCGACTGAGCGCCCGCACGCTCATTTCA
* * * *
15103650 TGGGTTAACTT-GGACATACGGAGTTCATTCTCGGTCTAAG-ATACGGAGTTCATTCTCAGTCTA
643 TGGGTTGACTTAGG-CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * **
15103713 ATATC-GATCGGACCGAGGGTTGTTGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATT
707 AGATCAGACCGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATT
*
15103777 TTTCTTCGCCGGAGCACCATCGTCGGAGCATCGCCGAAGAACCTGACAAGTG-GCATTGGGGTTC
772 TTTCTTCGCCGGAGCACCATCGTCGGAGCATCACCGAAGAACCTGAC--G-GCGCATTGGGGTTC
* * * * *
15103841 CGACGATCGAGGGAGCCGAGGGGGGGTATGCACACATGATGTGCGATGGGTGCTGGTACCTGGCC
834 TGACGATCGAGGGGGCC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
15103906 CTTATATTGGCCCCCTATCCCTCATCAAACCT
1 CTTATATTGGCCCCCTATCCCTCATCAAACCT
15103938 TGAACACTTT
Statistics
Matches: 2368, Mismatches: 275, Indels: 163
0.84 0.10 0.06
Matches are distributed among these distances:
878 1 0.00
879 24 0.01
880 2 0.00
881 379 0.16
882 19 0.01
883 4 0.00
884 9 0.00
885 21 0.01
886 28 0.01
887 8 0.00
888 235 0.10
889 24 0.01
890 8 0.00
891 5 0.00
892 83 0.04
893 6 0.00
895 1 0.00
896 2 0.00
897 3 0.00
898 1 0.00
899 265 0.11
900 318 0.13
901 61 0.03
902 86 0.04
903 80 0.03
904 87 0.04
905 3 0.00
906 2 0.00
908 2 0.00
910 2 0.00
911 1 0.00
914 10 0.00
915 19 0.01
916 139 0.06
917 33 0.01
918 19 0.01
919 7 0.00
920 2 0.00
921 17 0.01
922 352 0.15
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAG
GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGT
AAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGA
TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATGCCGTCTCTCTGGCCGAGC
AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCAGACCAGAATGAGGGTTGCGATAGCAGGATCGGCAGCACGCAGAGGGGGACCCACCGA
TCCCCGGCTTGCGAATCTCGCCCTTCTAGCCGACTGAGCGCCCGCACGCTCATTTCATGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CGGACCGAGGGTTGCAGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCGC
CGGAGCACCATCGTCGGAGCATCACCGAAGAACCTGACGGCGCATTGGGGTTCTGACGATCGAGG
GGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
Found at i:15104481 original size:26 final size:26
Alignment explanation
Indices: 15104445--15104497 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15104435 GTTGACTTAG
*
15104445 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15104471 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15104497 G
1 G
15104498 ATCGAACTTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15108027 original size:26 final size:26
Alignment explanation
Indices: 15107996--15108048 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15107986 GCTGACTTAG
15107996 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15108022 GCATACGGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15108048 G
1 G
15108049 ATTGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15108682 original size:892 final size:893
Alignment explanation
Indices: 15105351--15114429 Score: 11108
Period size: 903 Copynumber: 10.2 Consensus size: 893
15105341 GTTGACTTAG
* * * * ** * *
15105351 GCATACAGAGTTCATTCCTAATCTAAGATCGAACCAAACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15105416 CTCGGGCATGTGCTGGTGCCGTA-TTTTCTTCGTCGGGGCACCATCGCCAGAGTATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * *
15105480 ACCTGACCGACGATATTGGGGTTCCGATGATCGGGGTGGCCGGGGGGTGTGCGTAAATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGG-GGCCGGGGGGTGTGCGCACATGATGTGC
* *
15105545 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATGCCTCATCAAACCTCGAGAACTCACA
195 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
15105610 CGCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCCGTAGCCATTAAAGTGTCTGAAATT
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
** *
15105675 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAAATGAATTTTTTTTT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
15105740 GCATGCTAACAAAAATACAAGG---A----T--CAA-------G----AACTCTTTTCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
15105785 TTTTAAAAAATCTCGAACCGCAAAAAGTGTCAAAAATCATGAAAAATTAGAAAACGAGTTCGATT
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAA-TAGAAAACGAG-TCG--T
* *
15105850 CTTGCCATGAAACTTCACGTGAAGGCTTAAAGGACCATTGTTTGAATTTACCAAGCCAT-AAAAT
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA-CAAGCCATAAAAAT
* * * * * *
15105914 GGCACTAGCAGGTAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCATGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
*
15105979 TGGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCATTTCATCTCGGTTTGGC
645 T-GCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCATTTC--GTCGG-TTGGC
* * ** * * * *
15106044 TTTGGTATACGGAGTTCATTCCCAGTCTAAAGATTGGACCAGACCGAGAG-TACAGCAGCAGGAT
705 TTAGGCATACGGAGTTCATTCCCAGTCT-AAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* * * * * *
15106108 CAGCAGCACACAGGAGGGGGGCCCGATCGATCCCCTGCTTGCGCATCCCACCCCTCTGGCCGGCT
769 CGGCAGCACGCA-GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* * * * * * *
15106173 TAGGGCCTGCACGCTCATTTTGTGGGTTGACTTAGGCATACGGTGTTCATTCCAAGTCTAA
833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15106234 GCATATGGAATTCATTCCCAATCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * **
15106299 CTCAAGCATGTGCTGGTGCTGCATTTTTCTTTGCCGGGGCACCATCGTCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
15106364 ACCTGACCGGCGGGATTGGGGTTTCGACGATCGGGGGGCCTGGGGGTGGTGTGTGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCC--GGGG-GGTGTGCGCACATGATGT
* *
15106429 GCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATC-AACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15106493 CAACCCCATAAAGAGCATTTGAG-TTTTACAGGTTTGCTGCAAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15106557 TGGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAA--TTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15106620 ATGCACGCCAACAAAAGTACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAGTCCTTCC-AAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
15106684 ATTTTTAAAAAAAATCCTGAACCGCAAAAAGTTT------T--TGAAAAATAGAAAACGAGTCGT
453 AATTTT--AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* * * * * *
15106741 CTCGCCATGAAACTTCGCATGAAGGCTTAAGGGACCGTCGTATGAATTTACAAGCCAAAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
15106806 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * * *
15106871 ACGCATCCCCTCTCTTTGGCCGACATAGTGCTCACCCACCCGCCCGGACGCTCGTTTTGTCGGTT
646 GCGCATCCCGTCTCTCTGG-CGGCGTAGTG----CCCGCCCG-CC---CGCTCATTTCGTCGGTT
* ** * *
15106936 GGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCAGCAGCATG
702 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGG
* * ** ** * *
15107001 ATCGGGAGCATGCAGAGGGATACCCGACCGATCCCCGGCTTGCGCATCCCAACCCTCTGGTCAGC
767 ATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * **
15107066 TGAGCGCCCGTATGCTCGTTTCGTGGGTTGACTTAGGCATACAAAGTTCATTCCCAGTCTAA
832 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15107128 GCATACGGAGTTCATTCCTAGTGTAAGATTGGACCAGACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * *
15107193 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCATCGGAGCATCGTCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * ** *
15107258 ACCTAACCGACGACGTTGGGGTTCCGGCGATCGGGGAGGCTGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGG-GGC-CGGGGGGTGTGCGCACATGATGTG
*
15107323 CGAGGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15107388 A-ACCCTT-AAGAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15107450 GGGGGACACTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTGTTT
324 -GGGGACAC-TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * *
15107515 TGCGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCGCCAGAAA-TCCTTTCGAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA-AAACTCCTTCCGAA
* * **
15107579 AAAATTTTAAAAAATCTCTAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
451 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
** * *
15107644 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTCGGAATTTGCAAGCTATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * * * *
15107709 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCGCCCTAACAATCCACAGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
15107774 GCGCATCTCGTCTCTCTAGGCAGCGTAGTGCCCGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGT
646 GCGCATCCCGTCTCTCT-GGCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGG
* * * * * *
15107839 CGTACGGAGTTCATTCCCAGCCTAAGATCAGATCGGACTGAGGGTTGTGGCAGTAGGATCGGCAG
710 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAG
* * *
15107904 CACGCAAAGGGGGA-CCGGCCGATCCCCGGCTTGCCCATCCCGCCCCTCTGGCCGGCTGAGCGCC
775 CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * * * *
15107968 CGCACGCTCATTTCATTGGCTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15108022 GCATACGGATTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * *
15108087 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCATCGGGGCACTATCGTCGGAGCATCGTCGGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
15108152 ACCTAACCGGCGGCATTGAGGTTCCGATGATCGGGGGGTCGGGGGGTGTACGCACATGATGTGCG
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
* *
15108217 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTTGAGAACTCACAC
196 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15108282 CCCCTTAAAGAGCATTTGAGATTTTACAGGATTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
261 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
15108347 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
326 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
*
15108412 CATGCCAAAAAAAATACAAGGATCACGTCTACCAA-TTTGGGGCCAAAACTCCTTCCGAAAAAAT
391 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
** * * *
15108476 TTTAAAAAATCTTGAACCACAAAAAGTTTTAAAAATGATGAAAAATAGAAAACGAGTCGTCTTGC
456 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
*
15108541 CATGAAACTTCACGTGAAGGCTTGAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
521 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
15108606 GGCATGCAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCA
586 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * *
15108671 TCCTGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCATAGGTTGGCTTAGGAATAC
651 TCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATAC
** * ** *
15108736 GGAGTTCATTCCTGGTCTAAGATCAGACCGGA-TCGAGGGTTGCACCCA-CAGGATCGACAGCAC
715 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGC-GGCAGCAGGATCGGCAGCAC
** * *
15108799 GCAGAGGGGGACCCGATAGATCCCCGGGTTGCG-ATCCCGCCCCTTTGGCCGGCTGAGCGCCCGC
778 GCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGC
* * * *
15108863 ATGCTCGTCTCATGCGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
843 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15108914 GCATATGGAGTT-AGTTCACAGTCTAAGATCGAATCGGACTGAGGGTTACGGCAGCACATGCTGG
1 GCATACGGAGTTCA-TTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
*
15108978 GCTTCGGGCATGTGCTGGTGCCGCATTTGTCTTCGTCGGGGCACCA---TC---G---C--CGGA
65 GC-TCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA
* * *
15109032 GAACCTGACCGACGGCATTGGGGTTCC-AGTGATCGGGGGGGCCGGGGGCTGTGCACACATGATG
129 GAACCTGACCGGCGGCATTGGGGTTCCGA-TGATC-GGGGGGCCGGGGGGTGTGCGCACATGATG
* *
15109096 TGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAGACCTCGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15109161 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGAGTTTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15109226 ATGGCGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15109291 TGTGCATGCCAACAAAAGTACAAGGATCACGTCTTCAAAGTTTGGGGCCAAAACTCCTTCCAAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* **
15109356 AAATTTTAAAAAATCCCGAACCGCAAAAACTTTCGTAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
15109421 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * * *
15109486 CATTGGCACGCAGAAATATGAAGATGTACCTAAACCCA-C--CCA-CGTCTC--T-C-TGGC-CG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
15109542 -GCAT--AGT-GC-C---C-GC-T--CGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
647 CGCATCCCGTCTCTCTGGCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCA
* * * * * *
15109595 TACAGAGTTCATTCCCAGTCTAAGATCAAACCGGATTGAGGGTTGCAGCAGCAGGATTGGCAGCA
712 TACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCA
* * ** * * * *
15109660 CGTAAAGGCAGACCCGGCTGATCCCCGACTTGCGCATCCCGCCCATCTGGCCGGCTGAGCGCCCG
777 CGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
* * *
15109725 CACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAATTCATTCCCAGCCTAA
842 CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * **
15109777 GCATACAGAGTTCATTCCCAGTCTAAGATCGGATCAGACCGAGGGTTTTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
15109842 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCGTCGGAGCATCACCGGAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCAT---C---G-
* * * * *
15109907 ATCACCGCAGAACCTAACCGGCGACATTGGGGTTCCGGTGATCGGTGGGGTCGGAGGAGGGTGTG
124 -T---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGATGATCGG-GGGG-CCG-GG-GGGTGTG
*
15109972 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAAC
181 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
15110037 CTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTA
246 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
15110102 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
311 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * **
15110167 CTGAATTTTTTTATGAATGCCAATAAAAATAAAAGGATCACGTCTACCAAGTTTTTGGCCAAAAC
376 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * **
15110232 ACCTTCCGAAAAGATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAA
441 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* * * *
15110297 AACGAGTCGTCTTGCCATGAAACTTGACATTAAGGCTCAAGGGACCATTGTATGAATTTACAAGC
506 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* * *
15110362 CATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTACCTAAACCCACCTACCACCTTATCGA
571 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* *
15110427 TCCACGGCTTGCGCAACCTGTCTCTCTGGCCGGCGTAGTGCCCGCCCACCTGCCCGCCCGCTCAT
636 TCCACGGCTTGCGCATCCCGTCTCTCTGG-CGGCGTAGT----G--C-CC-GCCCGCCCGCTCAT
* * *
15110492 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTACTCTAAGATCAGACCAAACTGAGGGTT-
692 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTG
* * * * *
15110556 -----GC--GA----CAGCACGCAGAGGGGCACCCGGCCAAACCCCGGCTTGTGCATCCCGCCCC
757 CGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC
* * *
15110610 TTTGGCCAGCTGAGTC-CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTTATTCC
822 TCTGGCCGGCTGAG-CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
15110674 CAGTCTAA
886 CAGTCTAA
* * * * * * ** *
15110682 GCATACGAAGTTCATTTCTAGTCTAAGATCAGACCCGACCGAGGGTTGTGATAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15110747 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATCGGGGTACCAACG-CTGGAGTATCATCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTC-GGAGCATCGTCGGAG
* * * *
15110811 AACCTGACCGACGACGTTGGGGTTCCGATGATCGGGGGGGCCAGGGGTGGGGGGTGTGCACACAT
130 AACCTGACCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCC------GGGGGGTGTGCGCACAT
* * *
15110876 GATGTGCGATGGGTGCTGGTGCTTGGCCCTTATATTGACCCCCTATCCCTCATCGAACCTCGAGA
188 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * *
15110941 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAATAGCCATTAAAGTGTT
253 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* * * *
15111006 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAGTTTGAGTTTTTAGTTGAATG
318 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * * * *
15111071 GTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAATTTGGGACCAAAACTCCAT-C
383 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* * ** *
15111135 GAAAAAAATTTTAAAAAATCTCGAACCGCGAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAG
448 G-AAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* * *
15111200 TCATCTTGTCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAA
512 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* ** * *
15111265 AATGGCATTTGCATATAGAAATATAAAGATGTGCCTAAACCCACCTACCACCTTATCGATCCATC
577 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-C
* * ** * * *
15111330 -GCTTGCACATCCCATCTCTCTGGCCGATGTAGCGCCCACCAGTCCACCCGCTCGCTCATTTCAT
641 GGCTTGCGCATCCCGTCTCTCTGG-CGGCGTAGTG--C-CC-G----CCCGCCCGCTCATTTCGT
* * * * * *
15111394 TGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATC-GAATCGGACTAAGGGTTACGGC
697 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACTGAGGGTTGCGGC
* * * * * * * ** *
15111458 AGCAGGATCGACAGCACGCGGATGGGGACCCGATCGATCCCCGGGTTGTG-ATCACTTCCCTTTG
761 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTG
* * * * * * *
15111522 GCCGGCTGAGTGCCCGCATGCTCGTTTCATGCGTTGAATTAGGCATACGGAGTTCATTTCCAATC
826 GCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
15111587 TAA
891 TAA
* * * * * * *
15111590 GCATTCAGAGTTCGTTCGCAGTCTAAGATCAGATCGGACCGAGGGTTCCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15111655 CTTGGGCATGTGCTGGTGCCGCATTTGTCTTCGTCGGGGCACCA---TC---G---C--CGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * **
15111709 ACCTAACCGGCGGCATTTGGGTTCTGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCCG-GGGGGTGTGCGCACATGATGTG
* *
15111774 CGATGGGTGCTGGTACTTGGCCCTCATATTGGCCCTCTATCCCTCATCAAACCTC-AGTAACTCA
194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAG-AACTCA
* * * *
15111838 CACCCCCTTAAAGAGCATTTGAGATTTTACGGGTTTCCTGCCACTAGCCATTAAAATGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * * *
15111903 TGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACACTTCCAAAATTTTAAGCTGACTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT-C-GAGTTTTTAGCTGAATTTTT
* * *
15111968 TTGTGCATGCTAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTTCGAA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * *
15112033 AAAATTTTAAAAAAATCCCGAACCG-TAAAAGCTTT-TAAAATCGTGAAAAATGGAAAACGAGTC
451 AAAATTTT-AAAAAATCCCGAACCGCAAAAAG-TTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
15112096 GTCTTGCCATGAAACTTCACTTAAAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
15112161 AGGCATTGGCGTGCAGAAATATGAAGATGGGCCTAAACCCACCTACCACCCTATCGATCCACGAC
579 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
15112226 TTGCGCATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCCTGCCTGCCCGCTCGTTTCGTCGGTTGG
644 TTGCGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCG-C--CC-GCCCGCTCATTTCGTCGGTTGG
** * *
15112291 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGCTTACGGCAGCAGGAT
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGAT
* * ** * * * *
15112356 CAGTAGCAAATC-GAGGGCGG-CCTGATCGATCCCCTGCTTACGCATCCCGCCCCTCTGGCCGGC
769 CGGCAGC-ACGCAGAGGG-GGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
15112419 TGAGGGCCTGCACGCTCGTTTTGTGGGTTGACTTAGGCATACGGTGTTCATTCCCAGTCTAA
832 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15112481 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACC-GAGCTGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA-CCGAGGGTTGCGGCAGCACATGCTGG
* * * **
15112545 GCTCGGGCATGTGCTGGTGCTGTATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCACCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
*
15112610 AACCTGATCGGCGGCATTGGGGTTCCGATGATCGGGGGGGCCGGGTGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCC-GG-GGGGTGTGCGCACATGATG
** *
15112675 TGCGATGGGTGCTGGTACTTGGTTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTC
192 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15112740 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGGAGCCATTAAAGTGTCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15112805 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTGCAC-TCTGAGTTTTTAGCTGAATTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTT
* **
15112869 TTGTGC-TGCCAACAAAAAAACAAGGATCACGTCTACCAAGTTTGGTTTCCAAAACTCCTTCCGA
386 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTCCGA
* * *
15112933 AAAAATTTTAAGAAAATCCCGAACCGTAAAAAGTTTCGAAAGTCATGAAAAAATAGAAAACGAGT
450 AAAAATTTTAA-AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATG-AAAAATAGAAAACGAGT
* * * *
15112998 CGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGATCATTGTGTGAACTTACAAGCCATAAAA
513 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * *
15113063 ATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAAGCCACCTACCATCCTATCGATCCACGG
578 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
** * **
15113128 CTTGCGCATCCCGTCTCTCTGGCTGAAGTGGTGCCCGCCCGCCCGCCCGGTCATTTCGTCCATTG
643 CTTGCGCATCCCGTCTCTCTGGC-GGCGTAGTGCCCGCCCGCCCG--C--TCATTTCGTCGGTTG
* * ** ** * * * *
15113193 GCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATTGGACCAGACCAAAGGTTGTGGTAGTAGGA
703 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGA
** * * * * ** * *
15113258 TCGATAGCACGTAGAGGGGGATCCGACCGATCCCCAGCTTGTGCATCCTACCCCTCTGGTCGACT
768 TCGGCAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCT
* ** *
15113323 GAGCACATGCACGCTCGTTTCGTGGGTTGACTTAGACATACGGAGTTCATTCCCAGTCTAA
833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
15113384 GCATACGGAGTTCATTTTCAGTCTAAGATCGGATCGGACCGAGGGTTACGGCAGCAGATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** ** *
15113449 CTCGGGCATGTGCTGGTGCCACATTTTTCTTC-CCTGGGGCACCATCACCGGAGCATCACCAGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGTCGGAG
*
15113513 AACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGAGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCC-G-GGGGGTGTGCGCACATGATGT
*
15113578 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAACCCTCATCAAACCTCGAGAACTCA
193 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15113643 CACTCCCTTAAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 CACCCCCTT-AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15113708 AT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTATTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
15113772 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
15113837 AAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
15113902 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
15113967 CATTGGCATATAGAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGATTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * *
15114032 CGCATCCCGTCGCTCAGGCCGGCGTGGTGCCCGCTCGCCCGCTCATTTCGTTGGTTGGCTTAGGC
647 CGCATCCCGTCTCTCTGG-CGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGC
* * *
15114097 ATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGA-TCGAGGGTTACGACCA-CAGGATCGGCA
711 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCG-GCAGCAGGATCGGCA
* * * * ** *
15114160 GCATGCAGAGGGGGACCCGGCCGATCCTCGACTTTTGCATCCCGCCCCTCTGGCCGACTGAGCGC
774 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * **
15114225 CCGGACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTTGTCTAA
839 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *** *
15114280 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTGCAATAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * *
15114345 CTCGGGCAGGTGCTGGTACCATATTTTTCTTCGTCGGGGCACTACCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
15114410 ACCTGACTGGTGGCATTGGG
131 ACCTGACCGGCGGCATTGGG
15114430 CATACGGAGT
Statistics
Matches: 7091, Mismatches: 894, Indels: 409
0.84 0.11 0.05
Matches are distributed among these distances:
861 2 0.00
862 152 0.02
863 130 0.02
864 2 0.00
865 3 0.00
866 1 0.00
868 1 0.00
870 1 0.00
871 1 0.00
872 2 0.00
874 5 0.00
875 1 0.00
876 3 0.00
877 1 0.00
878 1 0.00
880 4 0.00
881 4 0.00
882 57 0.01
883 327 0.05
884 374 0.05
885 41 0.01
886 62 0.01
887 413 0.06
888 1 0.00
889 3 0.00
890 140 0.02
891 295 0.04
892 740 0.10
893 258 0.04
894 906 0.13
895 219 0.03
896 352 0.05
897 569 0.08
898 14 0.00
899 16 0.00
900 215 0.03
901 108 0.02
902 256 0.04
903 922 0.13
904 7 0.00
905 208 0.03
906 4 0.00
907 1 0.00
908 159 0.02
909 33 0.00
911 2 0.00
913 1 0.00
915 1 0.00
916 2 0.00
917 71 0.01
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCG
ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCGGCGTAGTGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15108918 original size:26 final size:26
Alignment explanation
Indices: 15108888--15108940 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15108878 GTTGACTTAG
*
15108888 GCATACGGAGTTCA-TTCCCAGTCTAA
1 GCATACGGAGTT-AGTTCACAGTCTAA
*
15108914 GCATATGGAGTTAGTTCACAGTCTAA
1 GCATACGGAGTTAGTTCACAGTCTAA
15108940 G
1 G
15108941 ATCGAATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTAGTTCACAGTCTAA
Found at i:15109790 original size:26 final size:26
Alignment explanation
Indices: 15109751--15109803 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15109741 GTTGACTTAG
15109751 GCATACAGAATTCATTCCCAGCCTAA
1 GCATACAGAATTCATTCCCAGCCTAA
* *
15109777 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGCCTAA
15109803 G
1 G
15109804 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGCCTAA
Found at i:15110685 original size:26 final size:26
Alignment explanation
Indices: 15110656--15110708 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15110646 GTTGACTTAG
* *
15110656 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15110682 GCATACGAAGTTCATTTCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15110708 G
1 G
15110709 ATCAGACCCG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15112493 original size:26 final size:26
Alignment explanation
Indices: 15112455--15112507 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15112445 GTTGACTTAG
*
15112455 GCATACGGTGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15112481 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15112507 G
1 G
15112508 ATCAGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15113395 original size:26 final size:26
Alignment explanation
Indices: 15113359--15113410 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15113349 TTGACTTAGA
15113359 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
**
15113385 CATACGGAGTTCATTTTCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15113411 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15114291 original size:26 final size:26
Alignment explanation
Indices: 15114254--15114306 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15114244 GTTGACTTAG
* **
15114254 GCATACGGAGTTCATTCCTTGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15114280 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15114306 G
1 G
15114307 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15114625 original size:26 final size:26
Alignment explanation
Indices: 15114588--15114639 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15114578 GTTGACTTAG
*
15114588 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCAGTCCCAGTCTAA
*
15114614 GCATACGGAGTTCAGTCCCAGTCTAA
1 GCATACGAAGTTCAGTCCCAGTCTAA
15114640 CATTGAACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCAGTCCCAGTCTAA
Found at i:15114707 original size:334 final size:334
Alignment explanation
Indices: 15114094--15114763 Score: 903
Period size: 334 Copynumber: 2.0 Consensus size: 334
15114084 GGTTGGCTTA
*
15114094 GGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTACGACCACAGGATCGGC
1 GGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGACCACAGGATCGGC
* * * *
15114159 AGCATGCAGAGGGGGACCCGGCCGATCCTCGACTTTTGCATCCCGCCCCTCTGGCCGACTGAGCG
66 AGCACGCAGAGGGGGACCCGACCGATCCCCGACTTTCGCATCCCGCCCCTCTGGCCGACTGAGCG
* * * **
15114224 CCCGGACGCTCATTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCTTGTCTAAGCATACGAA
131 CCCGGACCCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAA
* * * * ** * *
15114289 GTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTGCAATAGCACATTCTGGGCTCGGGCAG
196 GTTCAGTCCCAGTCTAACATCGAACCGGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGCAG
* * * * *
15114354 GTGCTGGTACCATATTTTTCTTCGTCGGGGCACTACCGCCGGAGCATCGTCGGAGAACCTGACTG
261 GTGCTGGTACCACATTTTTCTTCGTCGGGGCACCACCACCGGAGCATCGCCGGAGAACCTGACCG
*
15114419 GTGGCATTG
326 GCGGCATTG
* * * * *
15114428 GGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCTGACCGAGGGTTGCG-GCATCAGGATTGG
1 GGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGACCA-CAGGATCGG
* * * * * *
15114492 TAGCACGTAGAGGGGGGCCCGATCGATCCCCGA-TTTACGCATCCCGCCCCTCTGGTCGGCTGAG
65 CAGCACGCAGAGGGGGACCCGACCGATCCCCGACTTT-CGCATCCCGCCCCTCTGGCCGACTGAG
* *
15114556 CGCCCGTACCCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
129 CGCCCGGACCCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
* * *
15114621 GAGTTCAGTCCCAGTCTAACATTGAACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGGGC
194 AAGTTCAGTCCCAGTCTAACATCGAACCGGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGC
* * * * *
15114686 ATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGATCATCGCCGGAGAACCTGAC
259 AGGTGCTGGTACCACATTTTTCTTCGTCGGGGCACCACCACCGGAGCATCGCCGGAGAACCTGAC
15114751 CGGCGGCATTG
324 CGGCGGCATTG
15114762 GG
1 GG
15114764 GTTCCGACGA
Statistics
Matches: 289, Mismatches: 45, Indels: 4
0.86 0.13 0.01
Matches are distributed among these distances:
333 5 0.02
334 284 0.98
ACGTcount: A:0.20, C:0.27, G:0.30, T:0.23
Consensus pattern (334 bp):
GGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTACGACCACAGGATCGGC
AGCACGCAGAGGGGGACCCGACCGATCCCCGACTTTCGCATCCCGCCCCTCTGGCCGACTGAGCG
CCCGGACCCTCATTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGAA
GTTCAGTCCCAGTCTAACATCGAACCGGACCGAGGGTTGCAACAGCACATGCTGGGCTCGGGCAG
GTGCTGGTACCACATTTTTCTTCGTCGGGGCACCACCACCGGAGCATCGCCGGAGAACCTGACCG
GCGGCATTG
Found at i:15115509 original size:26 final size:26
Alignment explanation
Indices: 15115480--15115532 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15115470 GTTGACTTAG
*
15115480 GCATACGAAGTTCATTCGCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15115506 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15115532 G
1 G
15115533 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15118934 original size:877 final size:872
Alignment explanation
Indices: 15114614--15118964 Score: 5519
Period size: 866 Copynumber: 5.0 Consensus size: 872
15114604 CCCAGTCTAA
* * * * *
15114614 GCATACGGAGTTCAGTCCCAGTCTAACATTGAACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15114679 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGATCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * *
15114744 ACCTGACCGGCGGCATTGGGGTTCCGACGATC-GGGGGGCTG-GGGGGTGTGTGCACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
* * *
15114807 CCATGCGTGCTGGTACTTGG-CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15114871 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15114936 GGGGACACTTTTTTCAAATGGTCACAAAATATTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15115001 TGCATGGCAACAAAAATACAAGGATCACGTCTACCATGTTTGGGTCCAAAACTCCTTCCGAAAAA
391 TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * * * *
15115066 ATTTTAAAAAATCCCGAAGCGTAAAATGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTT
456 ATTTTAAAAAATCCCCAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
15115131 GCCATTAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATGGCA
521 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * **
15115196 TTGGCAGGCAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGATCCACGGCTTATG
586 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
15115261 CATCCCGTCTCTCTGGCCGGCATAGT----GCCCGCCCGCCCACTCATTTCGTCGGTTAGCTTTG
651 CATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * *
15115322 GCATATGGAGTTCATTCCCAGTCTAAGATCAAACCAGACCGAGGGTTGTAGCAGCAGGATCGGTA
716 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCAGGATCGGCA
* * * * *
15115387 GCATGCAGAGGGGGACCCG-CCGATCCCTGGCTTGTGCATCCCGCCCCTCTAGTCGGTTGAGTGC
781 GCACGCAGAGGGGGACCCGACCGATCCC-GGCTTGCGCATCCCGCCCCTCT-GGCGGCTGAGCGC
* * *
15115451 CCGTACGCTCGTTTTATGGGTTGACTTAG
844 CCGCACGCTTGTTTCATGGGTTGACTTAG
* *
15115480 GCATACGAAGTTCATTCGCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
1 GCATACGAAGTTCATTCCCAG--T---C-TA---AG---------A-T-T--G----GACCGGAC
* * * *
15115545 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGTCACATTTTTCTTCGTCGGGG
40 CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGG
* * * * * *
15115610 CACCATCGTCGGAGCATGGCCGGAGAACCCGACTGACGGCATTGGGGTTCCGACGATCGAGAGGG
105 CACCATCGTCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGG
*
15115675 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
170 CCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* **
15115740 TCCCTCACCAAACCTCGAGAACTCACACTTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
235 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* *
15115805 -CAGTAGCCATTAAAGTGTCTCAAATGGGGACACTTTTTTCAAATTGTCACAAAATCTTGTACAC
300 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
15115869 TTCGAGTTTTTTGCTGAAATTTTTTGTGCATGCCAAAAAAAATACAAAGATCACATCTACCAAGT
365 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGT
* ** * * *
15115934 TTGGGGCCAAAACACCTTTTGAAAAAATTTTAAAAAATCCCCAACCGCAGAAAGTTTTGAAATTC
430 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCCAACCGCAAAAAGTTTCGAAAATC
* * * * *
15115999 ATGAAAAATAGATAACGAGCCATCTTGCCATGAAACTTCACGTAAAGGCTTAAGGGACCATCGTA
495 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * * *
15116064 TGAATATGCAAGCCATAAAAACGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT
560 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
* * * * *
15116129 ACCACCGTATCGATCCATGGCTTGCGCATCCCGTCTATCTGGCCGGCTTAGTGCTCGCCCGCCCG
625 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCG
* * * *
15116194 TCCACCCGCTCGTTTTGTCGGTTGGCTTAGGCATATGAAGTTCATTCCCAGTCTAAGATC-AGAT
690 ----CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGA-AC
** ** * * *
15116258 CAAACCGAGGGTTGTGGCAGCAGGATCGGCAGCATGCAGAAGGGGGACCC-AGTCGATCCTTGGC
750 CGGACCGAGGGTTGCAGCAGCAGGATCGGCAGCACGCAG-AGGGGGACCCGA-CCGATCC-CGGC
* * **
15116322 TTACGCATCCCGCCCCTCTGGCTGGCAGAGCGCCCGCACG-TTCGTTTTGTGGGTTGACTTAG
812 TTGCGCATCCCGCCCCTCTGGC-GGCTGAGCGCCCGCACGCTT-GTTTCATGGGTTGACTTAG
** * * * *
15116384 GCATAC-AGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGATGCGGCAGCACATGCTAG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
15116448 GCTCGGGTATGTGCTGGTGCCGTATTTTTCTTCGCTGGGGCACCA---T-------T-GTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
15116502 AACCTGACC-AGTGGCA-TGGGGTTTCGGCGATCGGGGGGGCCGGGGGGGTGCGCGCACATGATG
130 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATG
* * * * *
15116565 TGCGATGGGTGCTGGTACTTGGCCTTTATATTGGGCCCCTATTCCTCATCAAACCTTGAGAACTT
194 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15116630 ACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAGGTGTCTGAA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15116695 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAATTTTTAGCTGAATTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15116760 TGTGCATGCC-AACAAAATACAAGGATCACGTCTACCAAGTTTGGGTCCAAAAATCCTTCCAAAA
389 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
15116824 AAATTTTAAAAAATCCCCAACCGCAAAAAGTTTCAAAAATCATGAAATATAGAAAATGAGTCGTC
454 AAATTTTAAAAAATCCCCAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTC
*
15116889 TTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
519 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*** * *
15116954 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATTGATCCACGGCTTG
584 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
15117019 CGCATCCCGCCTCTTTGGCCGTCACAGTGCCCGCTCGCCCGCCCACTCGCCTGGTCGTTTCATCG
649 CGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCG--C-C-CG-C---TCGTTTCGTCG
* * * *
15117084 GTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGACCGAGGGTTGCTGGAGC
706 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGC
* * ** *
15117149 AGGATTGGTAGCACGCAGAGGGGGACCCGGTCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCC
771 AGGATCGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGG-C
* * *
15117214 GGCTGAGCACCCGCATGCTGGTTTCATGGGTTGACTTAG
834 GGCTGAGCGCCCGCACGCTTGTTTCATGGGTTGACTTAG
* * ** *
15117253 GCATAC-AGAGTTCATTCCCAGTCTAAGATCGGACTGGATTGAGGGTTGTGGCAGCACATGCTGG
1 GCATACGA-AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * *
15117317 GCTCGGGCATGTGGTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTTGGAGCATCATCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * *
15117382 AACCTGACC-AGCAGCATTGAGGTTCCGACGATCGGGGGGGCCAAAGGGGGTGAGCGCACATGAT
130 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCGGGGGGGCC-GAGGGGGTGTGCGCACATGAT
* * * * * *
15117446 GCGCAATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCAAGAGCT
193 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
15117511 CACACCCCCTTAAAGAGCATTTGGGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGG
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
15117576 AATGGGGACACTTTTTTCAAATGGCCACAAAATCTTGTACACTTCAAGTTTTTAGCTAAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
15117641 TTGTGCAAGCCAAAAAAAATACAGGGATCACGTTTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
388 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * * *
15117706 AAAAGTTTAAAAAATCCCAAACCGTAAAAACTTTTGAAAATCATGAAAAATAGAAAATGAGTCGT
453 AAAATTTTAAAAAATCCCCAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGT
15117771 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
518 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
*
15117836 GCATTGGCACACAGAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
583 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * *
15117901 GCGCATCCCGTCTCTCTGGCCTACGTAGTGCCCGCCCGCCCGCCCGCTCATCTCGTGGGTTGGCT
648 GCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * *
15117966 TAGGCATACGGAGTTCATTCCTAGTCTAAGATTGGAA-CGGACCGATGGTTGCGGCAGCAGGATT
713 TAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCGAACCGGACCGAGGGTTGCAGCAGCAGGATC
* * * * *
15118030 GGCAGCACGCAGATGGCGACCCGACCGATTCCCAGCTTGCGCATCCCGCTCGTCT-GCAAGGCTG
777 GGCAGCACGCAGAGGGGGACCCGACCGA-TCCCGGCTTGCGCATCCCGCCCCTCTGGC--GGCTG
*
15118094 AGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAG
839 AGCGCCCGCACGCTTGTTTCATGGGTTGACTTAG
* * * *
15118128 GCATACGAAGTTCATTCCCAGTCTTAGATTGGATCGGATCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15118193 CTCGAGCATGTGCTGGTGTCGCATTTTTCTTCACCGAGGCACCATCGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * *
15118258 ACCTGACCGACGGCATTGGGGTTTCGACGATCGGGGGGGGCGAGGGGCTGTGCACACATGATGTG
131 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
* *
15118323 CGATGGGTGCTGGTACTTGGCCCTTATATTGTCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
196 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15118388 ACCCCCTTAAATG-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTTTGAAA
261 ACCCCCTTAAA-GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15118452 TGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTTTTAGCTGAATTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG---TTTTTAGCTGAATTTT
* * * * *
15118517 TTTGTGCATGCTAATAAAAGTACAACGATCACGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGA
387 TTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * ** * *
15118582 AAGAATTTAAAAAAATATCGAA-CGACAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTT
452 AAAAATTTTAAAAAATCCCCAACCG-CAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTC
15118646 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
516 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* *
15118711 TGGCATTGGCACACAAAAAAATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
581 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * * *
15118776 TTGCGCATCCCGTCTCTCTGGCCGCCATAATGCCCGCCCGCCCGCCCGCTTGTTTCATCGGATGG
646 TTGCGCATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
* * *
15118841 CTTAGGCATACGGAGTTTATTCCCAGTCTAAGATCGAATCGGACTGAGGGTTGCAGCAGCAGGAT
711 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCAGGAT
** * * * * * *
15118906 CAACAACACACAAAGGGGGACTCGACCGATCCCCGACTTGCGCATCCCGCCCTTCTGGC
776 CGGCAGCACGCAGAGGGGGACCCGACCGAT-CCCGGCTTGCGCATCCCGCCCCTCTGGC
15118965 ATTGACACAC
Statistics
Matches: 3029, Mismatches: 370, Indels: 160
0.85 0.10 0.04
Matches are distributed among these distances:
864 2 0.00
865 1 0.00
866 411 0.14
867 110 0.04
868 2 0.00
869 166 0.05
870 82 0.03
871 1 0.00
872 3 0.00
873 1 0.00
874 178 0.06
875 299 0.10
876 13 0.00
877 401 0.13
878 71 0.02
879 3 0.00
880 21 0.01
881 23 0.01
882 203 0.07
883 263 0.09
884 1 0.00
885 2 0.00
886 2 0.00
888 1 0.00
892 120 0.04
893 6 0.00
894 372 0.12
895 81 0.03
898 11 0.00
899 1 0.00
901 1 0.00
902 88 0.03
903 14 0.00
904 75 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (872 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
ATTTTAAAAAATCCCCAACCGCAAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
CATCCCGTCTCTCTGGCCGGCATAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCAGCAGCAGGATCGGCA
GCACGCAGAGGGGGACCCGACCGATCCCGGCTTGCGCATCCCGCCCCTCTGGCGGCTGAGCGCCC
GCACGCTTGTTTCATGGGTTGACTTAG
Found at i:15119296 original size:26 final size:26
Alignment explanation
Indices: 15119259--15119333 Score: 132
Period size: 26 Copynumber: 2.9 Consensus size: 26
15119249 GTTGACTTAG
*
15119259 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
*
15119285 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15119311 GCATACGGAGTTCATTCCTAGTC
1 GCATACGGAGTTCATTCCTAGTC
15119334 CAAGACCGAA
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15122446 original size:702 final size:705
Alignment explanation
Indices: 15121090--15122524 Score: 2053
Period size: 702 Copynumber: 2.0 Consensus size: 705
15121080 AGTCATACGG
* * *
15121090 AGTTCATTCCCAGTCTAAGATCGGATCTAACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
1 AGTTCATTCCCAGTCTAAGATCAGATCTAACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCA
** *
15121155 TGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCATCAGAGAACCTGACT
66 TGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCA-C-TC-G-GCA-CAT-A-AGAACCTGACT
* * * * *
15121220 GGCGGCATTGGTGTCGGCAATTGGGGGTGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
124 GACGGCATTGGTGTCCGCAATAGGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGTGC
* *
15121285 AGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
189 AGGTACCTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAA
* * * * *
15121350 AGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTTAAATGGTGACTCTT
254 AGAGCATTTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACAT
* *
15121415 TTTTCAAACGGTCATAAAATCTTGTACACTTTGAGTTTTTACCTAAATTTTTTGTGCATGCCAAA
319 TTTTCAAACGGTCACAAAATCTTGTACACTTTGAGTTTTCACCTAAATTTTTTGTGCATGCCAAA
* * *
15121480 AAAAATCCAAGGATCATGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAA
384 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAA
** * * * *
15121545 TCCCAAACCGCAAAATTTTTTAAAAATCATGAAAAATAGAAAACGAGTCTTCTTGCCATGAAATT
449 TCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
15121610 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAG
514 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAG
* * * * * * *
15121675 AAATATGGATATGTGCCTAAACCCACCTGCCACCCTATTGATCCACGGCTTGCGCAACCCATCTC
579 AAATATGAAGATGTGCCTAAAACCACCTACCACCCGATCGATCCACGACTTGCGCAACCCATCTC
* * * *
15121740 TCTGGCCGGCGTAGTGCCCACCGGCCTACCCGTTCGTTTTGTCGGTTGGCTTAGGCATACAA
644 TCTGGCCGGCGTAGTGCCCACCCGCCCACCCGCTCCTTTTGTCGGTTGGCTTAGGCATACAA
* * *
15121802 AGTTCATTCCCAGTCTAAGATCAGA-CTGGACTGAGGGTTGCTACAGCACATGCTGGGCTCGAGC
1 AGTTCATTCCCAGTCTAAGATCAGATCT-AACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
* *
15121866 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCA-TC-GC-CGT-AGAACCTGCCTGACGGC
65 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCACTCGGCACATAAGAACCTGACTGACGGC
*
15121927 ATTGAG-GTTCCG-ATGATAGGGGGGGCCGGGGGGGTATGCGCATATGATGTGCGATGGGTGCTA
130 ATTG-GTG-TCCGCA--ATAGGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGTGC-A
* * **
15121990 -GTGCCTGACCCTTATATTGGCCCCCTATCCTTCATCAAACCTGGAGAACTCACA-CCCCTTAAA
190 GGTACCTGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
* *
15122053 GAGCATTTGAGATTTTAC-AGTTTTGCTACCAGTAGCCATTAAATTGTCTGAAATGGGGAGACAT
255 GAGCATTTGAGATTTTACAAG-TTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACAT
* * * *
15122117 TTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGCTGAATTTTTTGTGCATGCCAAC
319 TTTTCAAACGGTCACAAAATCTTGTACACTTTGAGTTTTCACCTAAATTTTTTGTGCATGCCAAA
* *
15122182 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTGAAAAAA
384 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAA
* *
15122247 TCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
449 TCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACT
* * *
15122312 TCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCATTGTCATGCAG
514 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAG
* *
15122377 AAATATGAAGATGTGCCTAAAACCACCTACCACCCGATCGATCCACGACTTGCGCATCCCATTTC
579 AAATATGAAGATGTGCCTAAAACCACCTACCACCCGATCGATCCACGACTTGCGCAACCCATCTC
* * * *
15122442 TCTGGCTGGCGTAGTGCCCGCCCGCCCGCCCGCTCCTTTTGTCGGTTGGCTTAGGCATACGA
644 TCTGGCCGGCGTAGTGCCCACCCGCCCACCCGCTCCTTTTGTCGGTTGGCTTAGGCATACAA
15122504 AGTTCATTCCCAGTCTAAGAT
1 AGTTCATTCCCAGTCTAAGAT
15122525 TGGACCGGAT
Statistics
Matches: 647, Mismatches: 69, Indels: 24
0.87 0.09 0.03
Matches are distributed among these distances:
701 23 0.04
702 436 0.67
703 90 0.14
704 3 0.00
706 2 0.00
709 2 0.00
711 2 0.00
712 89 0.14
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.27
Consensus pattern (705 bp):
AGTTCATTCCCAGTCTAAGATCAGATCTAACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCA
TGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCACTCGGCACATAAGAACCTGACTGACGGCA
TTGGTGTCCGCAATAGGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGTGCAGGTACC
TGACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCAT
TTGAGATTTTACAAGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACATTTTTCAA
ACGGTCACAAAATCTTGTACACTTTGAGTTTTCACCTAAATTTTTTGTGCATGCCAAAAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCAAA
CCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
AAGGCTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGCATTGGCATGCAGAAATATG
AAGATGTGCCTAAAACCACCTACCACCCGATCGATCCACGACTTGCGCAACCCATCTCTCTGGCC
GGCGTAGTGCCCACCCGCCCACCCGCTCCTTTTGTCGGTTGGCTTAGGCATACAA
Found at i:15124046 original size:866 final size:863
Alignment explanation
Indices: 15121783--15125321 Score: 4556
Period size: 874 Copynumber: 4.0 Consensus size: 863
15121773 TCGTTTTGTC
* ** ** * **
15121783 GGTTGGCTTAGGC-ATACAAAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCTACA
1 GGTTGACTTAGGCTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGACA
* * **
15121847 GCACATGCTGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCGCC-GTA
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGAAACCATCGCCAG-A
* * * ** * * *
15121911 GAACCT-GCCTGACGGCATTGAGGTTCCGATGATAGGGGGGGCCGGGGGGGTATGCGCATATGAT
130 GAACCTAACCAGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
* * * * * **
15121975 GTGCGATGGGTGCTAGTGCCTGACCCTTATATTGGCCCCCTATCCTTCATCAAACCTGGAGAACT
195 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* * *
15122040 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGTTTTGCTACCAGTAGCCATTAAATTGTCTGA
260 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
15122104 AATGGGGAGACATTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTCAGCTGAATTTTT
325 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
*
15122169 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAA
390 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAA
*
15122234 AAA-TTTGAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACGAGTCGT
455 AAATTTTG-AAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
15122298 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATG
* * *
15122363 GCATTGTCATGCAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCGATCGATCCACGACTT
584 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTGATCGATCCACGACTT
* * *
15122428 GCGCATCCCAT-T-TCTCTGG-CTGGCGTAGTGCCCGCCCGCCCGCCCGCTCCTTTTGTCGGTTG
649 GCGCAACCC-TGTCTCTCTGGTC-GGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTG
* * * * * *
15122490 GCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATTGGACCGGA-TCGAGGGTTGTGGCAGTATG
712 GCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACT-GAGGGTTGCGGCAGCAGG
** * * *
15122554 ATCGGTAGCACATAGAGGGGGACCCGACCGATCCCCGACTTGTGCATCCCACCCCTCTGGCCGGC
776 ATCGGTAGCACGCAGAGGGGGACCCGA-CGATCCCCGGCTTGCGCATCCC-GCCCTCTGGCCGGC
* *
15122619 TGAGCGCCCGCATGCTCGTTTCGTG
839 TGAGCGCCCGCACGCTCGTTTCATG
* * * * *
15122644 GGTTGACATCGG-TATACAGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTT-ACGAA
1 GGTTGACTTAGGCTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGA-GAC
* ** *
15122707 AGCACATGCTGGGCTCGTGCATGTGCTGGTGATGCATTTTTCTTCGCCGAGGCACCATCATCGGA
65 AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCG-GG-A--A--A-C---
* *
15122772 GCATCGCCGGAGAACCTAACC-GACGGCATTGGGGTTCCGGCGATCGGGGCGGCCGGGGGGGGTG
120 -CATCGCCAGAGAACCTAACCAGACGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGGTG
15122836 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
183 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* * *
15122901 ACCTCTAGAACTCACACCCCTTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
248 ACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
*
15122966 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTT
313 TAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
15123031 AGCTGAATTTTTTATGCATGCCAAAAAAAATACAAGGATCACATCTACCAAGTTTGGAGCCAAAA
378 AGCTGAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAA
* * *
15123096 CTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
443 CTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGA
* *
15123161 AAACGAGTCGTCCTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAA
508 AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAG
* * *
15123226 CCATAAAATTGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCTGATCG
573 CCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTGATCG
* * * *
15123291 ATCCACGACTTGCGTAACCCTGTCTCTCTGGTCGGCGTAGTTCCTGCCTGCCTGCCCGCCTGCTC
638 ATCCACGACTTGCGCAACCCTGTCTCTCTGGTCGGCGTAG----TGCCCGCCCGCCCGCCCGCTC
* * *
15123356 ATTTCGTCGGTTGGCTTACGCATATGGAGTTCATTCCTAGTCTAAGATTAGACCAGACTGAGGGT
699 ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACTGAGGGT
* * *
15123421 TACGGTAGTAGGATCGGTAGCACGCAGAGGGGGACCCGACAGATCCCCGGCTTGCGCATCCCGCC
764 TGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGAC-GATCCCCGGCTTGCGCATCCCGCC
* * *
15123486 CTCTGGCCGACTGAGCGCCCGCACGCTTGTTTCGTG
828 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
* * *** *
15123522 GGTTGACTTAGGCT-TATGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGAGGCA
1 GGTTGACTTAGGCTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGACA
* *
15123586 GCACATGCTGGGCTTGGGCATGTGCTGGTGCCGTATTTTTCTTC-CCTGGGAAACCATCGCCAGA
66 GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACC-GGGAAACCATCGCCAGA
* * *
15123650 GAACTTGACCAG-CGGCATTGGGGTTCCGTCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
130 GAACCTAACCAGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGAT
*
15123714 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATGAAACCTCAAGAACT
195 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
* *
15123779 CACACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGA
260 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
15123844 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
325 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTT
* * * * * * *
15123909 TTTTGCATGCCAAAAAAAATATAAAGATGATGTCTACCAAGTTTGGGGCTAAAAATCCTTCCAAA
389 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAA
* * ** *
15123974 AAAATTTTGAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAG-AAACGAATCGT
454 AAAATTTTGAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
15124038 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATG
519 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATG
* *
15124103 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CTCGATCGATCCATGGCT
584 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCT-GATCGATCCACGACT
* * *
15124167 TGCGCATCCC-GTCTCTCTGGCCGGCGTAGTTCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGG
648 TGCGCAACCCTGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGG
* * * * * * *
15124231 CTTTGGCATACAGAGTTTATTCCTAGTCTACGATCAGACCTGACTGAAGGTTGCGGCAGCAGGAT
713 CTTAGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACTGAGGGTTGCGGCAGCAGGAT
* * ** * *
15124296 CGGCAGCATGCAGAGGGGGACTTGACTGATCCCCGGCTTGTGCATCCTGCACCTCTGGCCGGCTG
778 CGGTAGCACGCAGAGGGGGACCCGAC-GATCCCCGGCTTGCGCATCCCGC-CCTCTGGCCGGCTG
15124361 AGCGCCCGCACGCTCGTTTCATG
841 AGCGCCCGCACGCTCGTTTCATG
15124384 GGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
1 GGTTGAC-T-----TA--G-G------------CT----ATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
15124449 TCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTAGTGCCGTATTTTT
41 TCAGACCAGACCGAGGGTTGAGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTT
* *** * * *
15124514 CTTCCCCGGGGCTCCATCGCCGGAGCATCACCGGAGAACTTAAACAG-CGGCATTGGGGTTTCGG
106 CTTCACCGGGAAACCAT---C---GC--CA---GAGAACCTAACCAGACGGCATTGGGGTTCCGG
15124578 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
160 CGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
15124643 ATTGGCCGCCTATCCCTCGTCAAACCT-AGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTT
225 ATTGGCCCCCTATCCCTCATCAAACCTCA-AGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
15124707 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATAGGGG-TACTTTTTTCAAATGGTCAC
289 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATGGTCAC
**
15124771 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGAAAAAAAAAATACAAGGAT
353 AAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGCCAAAAAAAATACAAGGAT
** *
15124836 CACGTCTACCAAGTTTGGCTCGAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGTAAA
417 CACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGTAAA
* **
15124901 AAGTTTTAAAAATCGTTTAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
482 AAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
15124966 -AGGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATG
547 AAGGG-ACCATTGTATGCATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATG
* * *
15125030 TGCCTAAACCCACCTACCACCCT-ATCGATCCACGGCTTGCGC-ATCCTGTCTCTCTGGTCGACG
611 TGCCTAAACCCACCTACCA-CCTGATCGATCCACGACTTGCGCAACCCTGTCTCTCTGGTCGGCG
* * * * *
15125093 TAGTGCCCGCCTGCCCGCCCACTCATTTTGTCGGTTGCCTTAGGCATACGGAGTTCGTTCGC-AG
675 TAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC-CTAG
* * * * * *
15125157 TCTAAGATTGGACCGGACTGAGGGTTGCGGCAACAGAATCGATAGCACGCAGAGGGGCACTCGAT
739 TCTAAGATTAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-
* * * * *
15125222 CGATCCCCGGCTCGCTCATCCCGCCCCTCTGGCTGGCTGAGCGCCTGCACGCTTGTTTCATG
803 CGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATG
* *
15125284 GGTTGACTTAGGC-ATACGAAGTTCATTCCCAGTTTAAG
1 GGTTGACTTAGGCTATACGGAGTTCATTCCCAGTCTAAG
15125322 CATACGGAGT
Statistics
Matches: 2359, Mismatches: 237, Indels: 151
0.86 0.09 0.05
Matches are distributed among these distances:
861 221 0.09
862 43 0.02
863 1 0.00
865 20 0.01
866 341 0.14
867 154 0.07
868 4 0.00
870 1 0.00
871 2 0.00
872 43 0.02
873 85 0.04
874 387 0.16
875 17 0.01
876 2 0.00
877 4 0.00
878 127 0.05
879 128 0.05
880 1 0.00
883 2 0.00
888 94 0.04
889 2 0.00
891 2 0.00
892 1 0.00
894 4 0.00
896 2 0.00
898 1 0.00
899 351 0.15
900 314 0.13
901 3 0.00
902 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (863 bp):
GGTTGACTTAGGCTATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGAGACA
GCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGAAACCATCGCCAGAG
AACCTAACCAGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATG
TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAA
AATTTTGAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGC
ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCTGATCGATCCACGACTTGC
GCAACCCTGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCTAGTCTAAGATTAGACCGGACTGAGGGTTGCGGCAGCAGGATCGG
TAGCACGCAGAGGGGGACCCGACGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCATG
Found at i:15124425 original size:26 final size:26
Alignment explanation
Indices: 15124395--15124447 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15124385 GTTGACTTAG
15124395 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15124421 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15124447 G
1 G
15124448 ATCAGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15126338 original size:26 final size:26
Alignment explanation
Indices: 15126301--15126353 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15126291 GTTGACTTAG
*
15126301 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
*
15126327 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15126353 G
1 G
15126354 ATCGAACCGC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15126439 original size:26 final size:26
Alignment explanation
Indices: 15126409--15126461 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15126399 GTTGACTTAG
15126409 GCATACAGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
* *
15126435 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
15126461 G
1 G
15126462 ATCCGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:15128237 original size:26 final size:26
Alignment explanation
Indices: 15128200--15128252 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15128190 GTTGACTTAG
*
15128200 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15128226 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15128252 G
1 G
15128253 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15129124 original size:26 final size:26
Alignment explanation
Indices: 15129088--15129140 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15129078 GTTGACTTAG
15129088 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15129114 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15129140 G
1 G
15129141 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15130876 original size:25 final size:25
Alignment explanation
Indices: 15130842--15130898 Score: 96
Period size: 25 Copynumber: 2.3 Consensus size: 25
15130832 TGGAGGGGGA
* *
15130842 CCCGACCGATCCTCGGCTTGCGCAT
1 CCCGCCCGATCCCCGGCTTGCGCAT
15130867 CCCGCCCGATCCCCGGCTTGCGCAT
1 CCCGCCCGATCCCCGGCTTGCGCAT
15130892 CCCGCCC
1 CCCGCCC
15130899 CTCTGGCCGG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.09, C:0.53, G:0.23, T:0.16
Consensus pattern (25 bp):
CCCGCCCGATCCCCGGCTTGCGCAT
Found at i:15131863 original size:26 final size:26
Alignment explanation
Indices: 15131833--15131885 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15131823 GTTGACTTAG
*
15131833 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15131859 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15131885 G
1 G
15131886 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15133293 original size:886 final size:891
Alignment explanation
Indices: 15126396--15140562 Score: 9711
Period size: 902 Copynumber: 15.5 Consensus size: 891
15126386 AAAAAGTTCA
* *
15126396 TGGGTTGACTTAGGCATACAGACTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * *
15126461 GATCCGATCGGACCGAGGGTTACAGCAGCACATGCTAGGCTCAGGCATATGCTGGTGCCACATTT
66 GATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
** * * *
15126526 TTCTTTGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGACAGTATTGGGGTTTCG
131 TTCTTCATCGGGGCACCAT--CC---G---C-TCGGAGAACCTGACCGACGGCATTGGGGTTCCG
** * * * * * * *** *
15126591 GTTATTGGGGGGATCGGGGGGGTGTGTGCACAAGATGTGCGATGGGTGCTAGTACTTGGTATTTC
187 GAGATCGGGGGG-GCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * * *
15126656 TATTGGCCTCTTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTT
251 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
15126721 TACAGGTTTTCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACA
316 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
15126786 AAATCTTGTACACTTCGAGTTTTTACCTGAA-TTTTTTGTGCGTGCCAACAAAAATACAAGGATC
381 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* ** * *** *
15126850 ACGCCTATTAAGTTTGGGGCCAAAACTCCTTTC-AAAAAATTTTACAAAATTTTGAACCTCAAAA
446 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
* *
15126914 AGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
511 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
** *
15126979 AGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCACATAGAAATATGAAGATGTG
576 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
* * *
15127044 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGT
641 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* *
15127109 ---------GCCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
706 GCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
15127165 AGATCAGATCGGA-TCGAGGGTTGCGGCAGCAGGATTGACAGCACGCAGAAGGTGA-CCGGCCGA
771 AGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGA
* * *
15127228 TCCCCGG-TTGGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCG
835 TCCTCGGCTT-GCGCATCCCAGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* ** * *
15127285 TTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGTGGAGTTCATTTCCAGTATAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
** ** * ** **
15127350 GATCGGATTGGACTGAGGGTTGTGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGTAGCATTT
66 GATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * *
15127414 TTCTTCACCGGGGCACCATAGTTGGAGCATCGC-CGGAGAACCTGACCGGCGGCTTTGGGGTTTC
131 TTCTTCATCGGGGCACC--A--T----C--CGCTCGGAGAACCTGACCGACGGCATTGGGGTTCC
*
15127478 -GACGATC-GGGGGG-CGGGGCGGTGTGCGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCT
186 GGA-GATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * *
15127540 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCTTTTAAGAT
249 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * * *
15127605 TTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAGTGGGGACACTTTATTCAAATGGTCA
314 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* * *
15127670 TAAAATCTTGTACACTTCGTGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
379 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * ** * *
15127735 TCACGTCTACCCAGTTTGGGGCCAAAACTTCTTTCAAAAAAATTTAAAAAAATCTTGAATCGTAA
444 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAA
*
15127800 AAAGTTTCAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGC
509 AAAGTTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
15127865 TTAATGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACACAGAAATATGAAGAT
573 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
15127930 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
638 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * *
15127995 AGTGATCGCCCACCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGTGTTCATTTCC
703 AGTG--C-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * * * * ** * *
15128060 TGTCTAAGATCGGACCAGACCGGGGGTCGCGGCAGCAAGATCGGTAGCACACAGAGGGTGACCCG
765 AGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCG
* * *
15128125 GCCGATCGTCGGCTTGCGCATCCCA-CCCTTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCG
830 ACCGATCCTCGGCTTGCGCATCCCAGCCC-TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
15128187 TAGGTTGACTTAGGCATACGAAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * *
15128252 GATCAAACCGGATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATATGCTGGTGCCCGCATT
66 GATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCGCATT
** * * * * *
15128317 TTTCTTCA-CCAGGCACCATTACCAGAGCATCGTCGAAGAACCTGACTGGCGACTTTGGGGTTTC
130 TTTCTTCATCGGGGCACCA-T-CC---GC-TCG--G-AGAACCTGACCGACGGCATTGGGGTTCC
*
15128381 -GATGATC-GGGGGGCCGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTA-------C--
186 GGA-GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* **
15128435 ---TTGGCCCCATATCCCTCATCAAACCTCGAGAACTCAGGCCCCCTTAAAGAGCATTTGAGATT
250 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
15128497 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGTGGACACTTTTTTCAAATGGTCAC
315 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
15128562 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAACACAAGGAT
380 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * *
15128627 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAGATCCCGAACCACAAA
445 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
** * * * * *
15128692 AA-TTTTGAAAATCGTGAAAAATACAAAATGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTT
510 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
15128756 AAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACACAGAAATATGAAGATGT
575 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * *
15128820 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCATCTTTCTGGCCGGCGTAG
640 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * * *
15128885 TGCCCGCCTGCCCGCCCGGCCGCTCGTTTCGTCTGTTGGCTTATGCATGCGGAGTTCATTCCCAG
705 TG-CC-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** * ** * *
15128950 TCTAAGATTGGACCAGACCGAGGGTTGTAGCAGCAGGATC-AGCAGCACGCAGAGAGGTACCCGA
767 TCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGA
* * * * * *
15129014 CCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTTAGCGCCTGCACACTCGTTTCG
831 CCGATCCTCGGCTTGCGCATCCCAGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* *
15129075 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
** * * * * *
15129140 GATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTT
66 GATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * ** * *
15129205 TTCTTCGTCGGGGCACCATCGTCGGAGCAACGTCGGAGAACCTTATTGGCGGTATTGGGGTTCCA
131 TTCTTCATCGGGGCACCATC--C---G---C-TCGGAGAACCTGACCGACGGCATTGGGGTTCC-
* * * * *
15129270 GCA-ATC-AGGGGGCCGGGGGGTGTTCGCACATAATGTGCGATGAGTGCTGGTACTTGGCCCTTA
186 GGAGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
15129333 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
251 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
15129398 TACAGGTTTGCTGGCAGTAGCCACTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGATCACA
316 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
15129462 AAATCTTGTACACTTCGAGTTTTTAGTTGAA-TTTTTTATGCATGCCAAC-AAAATACAAGGATC
381 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * *
15129525 AAGTCTACCATGTTTGAGGCCAAAACT-CATTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAG
446 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAA-
* * * *
15129589 AAAGTTTGAAAAATCATG-AAAACACAAAACGAGTC-TCTTGCCATGAAACTTCACGTCAAGGCT
509 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
*
15129652 TAAGGGACCATTGTATGAATTTACACGCCATATAAAATGGCATTGGCACACAGAAATAATGAAGA
574 TAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCACACAGAAAT-ATGAAG-
* * * *
15129717 ATGTGCCTAAACCCTAACCTACCACCCTATCGATTCCACAGCTTG-TCATACTGTCTCTCTGCGC
636 ATGTGCCTAAACCC--ACCTACCACCCTATCGA-TCCACGGCTTGCGCATCCCGTCTCTCTG-GC
** * * *
15129781 CGGTGTAAGTGCCCCGCCCGCCCGCCCGCTCCTTTTTGTCGGTTGGCTTAGGCCAATAACAGAGT
697 CGACGT-AGTGCCCCGCCCGCCCGCCCGCT-CGTTTCGTCGGTTGGCTTAGG-C-AT-ACGGAG-
* * * * * *
15129846 TTCATTCCCAGTCTAGTGATTAGACCAAAC-CATGGGTTGTGCGCAGCAGGATCG-TAGCACGCA
756 TTCATTCCCAGTCTA-AGATCAGACCAGACTGA-GGGTTGCG-GCAGCAGGATCGACAGCACGCA
* * * * * **
15129909 -AGAGGGACCCCAGCTGATCCT-GGCTTGGCGC-TCCCATCTCCTTCTGGCCGGCCCCTAAGCAT
818 GAGGGGGACCCGA-CCGATCCTCGGCTT-GCGCATCCCAGC-CC-TCTGGCCGG---CTGAGCGC
* *
15129971 CCGCTACACTCGTTCCG
876 CCGC-ACGCTCGTTTCG
* *
15129988 GGGGTTGACTTAGGCATAC-GAATTCATT-CCAGTC-AAGCAATA-GGAGTTCATTCCCAGTCTA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC-ATACGGAGTTCATTCCCAGTCTA
* * * *** *
15130049 A-AT-AGACCTGATCGAGGGTTGTAGCAGCACATGCT-GGC-C-GGCA-GTGCTGG-GCTGCATT
65 AGATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* **
15130107 TTTCTTCGTCGATCGCGGACAACCATCCGATCGAGCTAACGTCGGAGAACTAGGCTTATTGTGTG
130 TTTC-T--TC-ATCG-GGGC-ACCAT-C---C--G----C-TCGGAGAAC----C------TGAC
* * * * **
15130172 CG-CGGCCATATCTGAAAGGGTTCTGG-CATCGGGGGCGTCTGGGGTTTGTGCGCACATGATTGT
168 CGACGG-C--AT-TG---GGGTTCCGGAGATCGGGGG-GGCCGGGGGGTGTGCGCACATGA-TGT
* * *
15130235 GCGATGGGTGCTGGTACTTGACCCTTATATTGGCACCCTATCCCTCATCAAAACCTTGTGAGAAA
224 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACC-T-CGAG-AA
*
15130300 CTCACA-CCCC-TAATGAGCATTTGAGATTTTAC-GCGTTCTG-TGGCCAGTAGCCACTATAAAG
285 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG-GTT-TGCT-GCCAGTAGCCA-T-TAAAG
** **
15130361 TGTCTGAAATGGGGACAACTTTTTGAAAATAATCACAAAATCTTGTACACTTCGAGTTTTTAGCT
345 TGTCTGAAATGGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
15130426 GAATTTTTTTGTGCATGCCCAAAAAAAAT-CAATGGATGCAAGTCTACCAAG-TTGGGGCCAAAA
409 GAATTTTTTTGTGCATG-CCAACAAAAATACAA-GGAT-CACGTCTACCAAGTTTGGGGCCAAAA
* * * *
15130489 ATCATTTCCG-AAAAATTTT-AAAAATCCCGAACC-CAACAAAAGTTT-GAAAATCGTGAAAAAT
471 CTCCTTT-CGAAAAAATTTTAAAAAATCCCGAACCGC-A-AAAAGTTTCAAAAATCATGAAAAAT
*
15130550 AG-AAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
533 AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* ***
15130614 AAGCCATAAAAATGGCATTCGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
598 AAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
15130679 TCGATCTACGGCTTGCGCATCCCGTCTCCCTGGCCGACGTAGTGCCCCGCTCGCCCGCCCGCTCA
663 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCGCCCGCCCGCTCG
* * * *
15130744 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTACATCAGATCAGACCGAGGGTT
728 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT
* **
15130809 GCGACAGCAGGATCGACAGCACGTGGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCC-GCC
793 GCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCAGCC
** ** * *
15130873 CGATCCCCGGCTTGCGCATCCCGC-C-C-C---TC-
858 CTCTGGCCGGC-TGAGC-GCCCGCACGCTCGTTTCG
** * * * * * * *** *
15130902 T-GGCCGGCTGAGCGC--CCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1 TGGGTTGACTTAG-GCATACGGA-GTTC-ATTC-CCAG-T--C-TAAGCATACGGAGTTCATTCC
* ** * * * * ** *
15130964 TAGTCTAAGATCGGACCAGACCAAGGGTTGCCGCAGCACATGCTGTTCTCGAGCATGTGCTGGTG
58 CAGTCTAAGATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * *
15131029 CCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC-A-AGAATTG
123 CCGCATTTTTCTTCATCGGGGCACCAT--CC---G---C-TCGGAGAACCTGACCGACGGCATTG
* * * *
15131092 GGGTTCTGGCGATCGAGGGGCCCGGGGAGGTGTGCGCACATGAT-TGCGATGGGTGCTGGTACTT
179 GGGTTCCGGAGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
15131156 GGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCAAGAACTCACACCCCCTTAAAGAGCATT
243 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-T
*
15131220 TTGAAGATTTTAACAGGTTTGCTGCCAGTA-CCGTTAAAGTGTCCTGAAATGGGGACACTTTTTT
307 TTG-AGATTTT-ACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACAC-TTTTT
* * *
15131284 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTAAGCT-AAATGTTTTGTGCATG-CATC
368 TCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTT-AGCTGAATTTTTTTGTGCATGCCAAC
* * * *
15131347 -AAAATACAAGGATCAATGTCTACCAAAGATTGAGGCCAAAAAC-CC-TTCCAAAAAATTTT-AA
431 AAAAATACAAGGATC-ACGTCTACC-AAGTTTGGGGCC-AAAACTCCTTTCGAAAAAATTTTAAA
* *
15131408 AAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAA
493 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
15131472 ACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTTACCAGCCATAAAAAATGGCATTGGCA
558 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCAT-AAAAATGGCATTGGCA
**
15131537 CGTAGAAAATATGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
621 CACAG-AAATAT-GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
15131602 CCGTCTCTCTAGCCGGCGTAGTACCCGCCGCCCGCACGCGCCGCCCGCTCGTTTTCGTTGGTTGG
684 CCGTCTCTCTGGCCGACGTAGT----G-C-CCCGCCCGC-CCGCCCGCTCG-TTTCGTCGGTTGG
* * *
15131667 CTTAGGCATAACGGCGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGGCAGCAGCATG
741 CTTAGGCAT-ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTT-GCGGCAGCA-G
* * ** *
15131732 GATCGGCAAGCACGCAGA-GGGGACCCTGATCGATCCT-GGCTTGCGCATCTGACCCCTCTGGCC
803 GATCGAC-AGCACGCAGAGGGGGACCC-GACCGATCCTCGGCTTGCGCATCCCAGCCCTCTGGCC
* * *
15131795 GTCTGAGCACCCGCAC-CTCGTTTCA
866 GGCTGAGCGCCCGCACGCTCGTTTCG
*
15131820 TGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
15131885 GATCAGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATTT
66 GATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * *
15131950 TTC-TCGTCGAGGCACCATCGCCGACCATCGTCGAAGAACCAGACCGACGACATTGGGGCTCCGG
131 TTCTTCATCGGGGCACCAT--CCG--C-TCG--G-AGAACCTGACCGACGGCATTGGGGTTCCGG
* * * * *
15132014 TGATCGGGGGGCCCGAGGGG-GTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCTTTATA
188 AGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
*
15132078 TTGGCCCCCT-TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-TTTA
253 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
15132141 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTTCAAATGGTGATAA
318 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT-TTCAAATGGTCACAA
* * *
15132206 AATCTTGTACACTCCAAGTTTTTAGCTGAATTTGTTTGTTGCATGCCAAC-AAAATACAAGGATC
382 AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCCAACAAAAATACAAGGATC
* * * * **
15132270 ACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCATAAAA
446 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
** * * *
15132335 AGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGACTTA
511 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * ** *
15132400 GGGGACCATTGTATGAATTTACAAGCCATCAAAATGGCATTGGCACGTAGAAATATGAAGATATG
576 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTG
* * *
15132465 CCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGACGTAGT
641 CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGT
* * * * * *
15132530 GCCCGGCCCGCCTGCCCCGTTCGTTTCGTC-ATGTGGCTTAGGCTTACGGAGTTTATTCCCAGTC
706 GCCCCGCCCGCCCG-CCCGCTCGTTTCGTCGGT-TGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * * * *
15132594 AAAAATCAAACCTGACTGA-GGTTGTGGTAGCAGGATCG-TAGCACGTAGAGGGGGACCCGATCG
769 TAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCG
* * * * * *
15132657 ATCCTCAGCTTGTGCAT-CC-GCCCTCTAGTCGGTTGAGCGCCCGCACGCTTGTTTCG
834 ATCCTCGGCTTGCGCATCCCAGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
15132713 TGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATATGGAGTTCATTCCCCCGTCTA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCCAGTCTA
* * * **
15132778 AGATCAAACAGGATCGAGGGTTTACGGCAGCACATGCTAGGCTCAAGCATGTGCTGGTGCCGCAT
65 AGATCAAACCGGACCGAGGG-TTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
*
15132843 TTTTCTTCATCGGGGCACCAT-CGCT-GGAGAACCTGACCGACGGCATTGGGATTCCGGAGATCG
129 TTTTCTTCATCGGGGCACCATCCGCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGAGATCG
* * * * **
15132906 GGGGGGCCGGGGGGTGTGCGCAAATGATGTGTGATGGGTTCTGGTACTTGGCCTTTATATTGAAC
194 GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* * *
15132971 CACTATCCCTCATCAAACCTTGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
259 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
* *
15133036 TGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACCTTTTTCAAATGGTCAAAAAATCTTG
324 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * ** **
15133100 TACGCTTTGAGTTTTTAGCTGAA-TTTTTTGCACACCCCAACAAAAATACAAGGATCACGTCTAC
389 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * *
15133164 CAACTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACTGCAGAAAGTTTCAA
454 CAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
*
15133229 AAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
519 AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * * *
15133294 TTATATGAATTTACAAGCCAAAAAAATGGCATTCGCACACAGAAATATGAAGATGTGCCTAAACA
584 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
* * * *
15133359 CACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTG-CCCGCC
649 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCGCC
* * * * *
15133423 CGCCCACCCGCTCGTTTTGTCAGTTGGCTTAGACGTACGGAGTTCATTCCCAGTCTAAGATTCA-
714 CGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAG
* * * * * * *
15133487 A-CTGAACCGAGGGTTGCGACTGCAGGATTGACAGCATGCAAAGGGGGACCC-AGCCGATCCTCG
778 ACCAG-ACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CCGATCCTCG
* * * * *
15133550 ACTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACACTCATTTCG
841 GCTTGCGCATCCCAGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
*
15133601 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCTA-TCTT
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC-AGTCTA
* * * * * ** * * **
15133665 AGATCAGATCGGATCGAGGGTTGCGGCAGCACAAGAAGGGCTCAGGCATGTGTTGGTGTTGCATT
65 AGATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* *
15133730 TTTCTTCATCGGGGCACCAT-CGCTAGAGTATCACCCAGGAACCTGACCGGCGGCATTGGGGTTC
130 TTTCTTCATCGGGGCACCATCCGCTCG-G--------A-GAACCTGACCGACGGCATTGGGGTTC
* * * * * *
15133794 C-GACGATAGGGGTGGTCGAGGGGGGTTGTGCGCACATGATTTGCGATGGGTGCTGTTACATGGC
185 CGGA-GATCGGGG-GGGC-CGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* * *
15133858 CCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACACCTCCTTAAAGTGCATTTGA
246 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* * *
15133923 GATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCAGAAATGGGGACACTTTTTTCGAATGG
311 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
15133988 TCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAA
376 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* ** * * * * ** *** *
15134053 GGATCACGTCTACCAACTTTATGGCCAAAAATACTTCCAAAAAAAAATTAAAAAATCTAAAATCG
441 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCG
* * * * * *
15134118 TAAAAAGTTTCAAAAATCAAGAAAAACAGAAAATGAGTCGTCTTGCCATGAAACTTTACGTCAAG
506 CAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
* **
15134183 GCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG
571 GCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAG
* * *
15134248 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-TTGTG-ATCCCGTCTCTCTGGCTGAC
636 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
** *
15134311 GTAGTGCCCACCCGCCCATCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTC
701 GTAGTG--C-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
** * * ** ** * * *
15134376 CCAGTCTAAGATTGGATCAGAAC-AAGGGTTATGATAGTAGGATTGACAAG-ACGTAGAGGGGGA
763 CCAGTCTAAGATCAGACCAG-ACTGAGGGTTGCGGCAGCAGGATCGAC-AGCACGCAGAGGGGGA
* * * * * *
15134439 CCTGATCGATCCCCGTCTTGCGCAT-CCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTT
826 CCCGACCGATCCTCGGCTTGCGCATCCCAG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
15134503 CG
890 CG
* * * * *
15134505 TGGGTTGACTTAGGCATACAGAATTCATTCCTAGTCTAAGCATAAGAAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * ** *
15134570 GATCGAACCGGACCGACGATTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGCTGTTGTATTT
66 GATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * *
15134635 TTCTTC-GCTGGGGCACCATCACCGGAGCATCGTTGAAGAAGCTAACCGACAGCATTGGGGCTCC
131 TTCTTCATC-GGGGCACCAT--CC---GC-TCG--G-AGAACCTGACCGACGGCATTGGGGTTCC
* * * * *
15134699 GGCGATCGGGGGGATCGGGGGGTGTGTGCGCACATGATGTGCGATAGGTGCTAGTACTTGGCCCT
186 GGAGATCGGGGGG-GCCGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* *
15134764 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGAT
249 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* *
15134829 TTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGG-TACTTTTTTCAAATGGTC
314 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATGGTC
* *
15134893 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-AAAAAAAAATACAAGG
378 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
** * * * *
15134957 ATCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGTA
443 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCA
** * **
15135022 AAAAGTTTTGAAAATCGTTTAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
508 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
** *
15135087 TT-AGGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGA
573 TTAAGGG-ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
* *
15135151 TGTGCCTAAA-CCACCCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCGAC
637 TGTGCCTAAACCCA-CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * * *
15135215 GTAGTG-CCTGCCTGCCCGCCC-ATCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCC
701 GTAGTGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCC
** * * * * * *
15135278 AGTCTAAGATTTGGACCGGACTGAGGGTTGCGGCAACAGAATCGATAGCACGCAGAGGGGCACTC
765 AGTCTAAGA-TCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC
* * * * * * *
15135343 GACCGATCCCCGGCTCGCTCATCCC-GCCCCTCTGGCTGGCTGAGCGCGCTGCACGCTTGTTTCA
829 GACCGATCCTCGGCTTGCGCATCCCAG-CCCTCTGGCCGGCTGAGCGC-CCGCACGCTCGTTTCG
* *
15135407 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAGGTGAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA-GT---
* ** * ** * ** * ** ** * ** ** *
15135472 ATAATTTTAAA--AAATCC-CGTCTCT-CTGGCCAACGTAGTGCCCGTCT-GCCCACCTGCTCGT
62 CTAAGATCAAACCGGA-CCGAGGGT-TAC-GG-CAGCACA-TGCTGGGCTCGGGCATGTGCTGGT
** ** ** * * ** * * * *
15135532 TTCGTCGGTTGGCTTAGGCATACAGAG-TTCATTC-C-C--AG--TCTAAGATCAGATCGG-ATC
122 GCCG-CATTTTTCTT---CAT-CGGGGCACCATCCGCTCGGAGAACCT--GA-CCGA-CGGCATT
* * ** ** ** ** * *
15135589 GAGGGTTACGGCAGCA-CATGTTGGGCTTGGGAATGTGCCGGTGCCACATTTTTCTTCG-TCAGG
178 G-GGGTTCCGG-AG-ATC-GGGGGGGCCGGGGGGTGTG-C---G-CACA-TGATGTGCGAT--GG
** * ** * *** * ******
15135652 GCACCATCGT-C--GGAGC--ATCATCGGAGAACCTGA-CCGGTGGCATTGGGGTTCCGACG-A-
231 G-TGC-TGGTACTTGGCCCTTAT-ATTGG-CCCCCT-ATCC-CT--CATCAAACCT-CGA-GAAC
****** * ** * * * * * * * **
15135709 TCGGGGGGCC----AGGGGGTGTGCGCATATGA-TGTGTGATGGGTGCTGGTA--C-TT---G-G
286 TCACACCCCCTTAAAGAGCATTTGAG-ATTTTACAG-GT--TTGCTGCCAGTAGCCATTAAAGTG
* * * * ** ** **** ** * *
15135762 CCCTTATATTGGCCCACTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTG
347 -TCTGAAATGGGGACACT-T---TTTTCAAA--T-G-G---TCACAAAATCTTGTACA-C-TTCG
* ** * * ** * * * * **
15135827 AGATTTTA-C--AGGTTTGTTG-CCAATAG-CAATTAAAGTGTCTGAAATTGGGA-CACTTTTTT
398 AGTTTTTAGCTGAATTTTTTTGTGC-AT-GCCAACAAAAAT-AC---AA---GGATCACGTCTAC
* * * **** *** ******** **
15135886 CAA--AT-GGTCACAAAA-TCTTTTAC-ACTTAGTGTTTTTAGCTGAATTTTTTTGTGCATGCCA
454 CAAGTTTGGGGC-CAAAACTCCTTT-CGA---AAAAATTTTA-AAAAATCCCGAACCGCA--AAA
* * ** * *** * ** * **
15135946 A----CAAAAATACAGGGATCA-CGTCTACTAAGTTTTTTTGCCA--AAACTCTTTC-CGAAAAA
511 AGTTTCAAAAAT-CATGAAAAATAGAAAAC-GAGTCGTCTTGCCATGAAA--C-TTCACG-TGAA
*** *** * ** * ** * *
15136003 ATTTTAAAAAATC-TTGAACCGTAAAAATTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCT
570 GGCTTAAGGGACCATT-----GTATGAA--TTT-ACAA----G--CCATA-AAAATG-G-CAT-T
* * * * ** *** ** * * ***
15136067 TGC-CATCA-AACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCC-AT--AAAA
617 GGCACA-CAGAA-AT-A--TGAA-G---ATGTG-CC--TAAACCCACCTACCACCCTATCGATCC
* * * *** * ** ** * ** *
15136127 ATGGCATTG-GCATGCAG-AAATAT-GAAGA--T-GTGCCTCAACCCACCTACAACC-CT-ATTG
670 ACGGC-TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-CCGCCCGCC--CGCCCGCTCGTT-
** * ** * * * ** * ** ** * **
15136184 ATCCACGGCTTGCGCAT-CCCTCTCTCTGGCCAGCGTGGTGCCCACCG-C-CCGCCCCG-CTTG-
730 -TCGTCGG-TTG-GCTTAGGC-AT-AC-GG--AG-TTCATTCCCA--GTCTAAGATCAGACCAGA
* * * * ** ** * * *
15136244 CTCATTTCGTTGGTTGGCTTAGGCTTACGGAGTTCATTC-CCAG-ACTAAGA-TCGGATCGGATC
784 CTGA----G--GGTT-GC---GGC--A-GCAG--GA-TCGACAGCACGCAGAGGGGGACCCGACC
** * * * * * * * *
15136306 GAGGGTAGT-GGCAGTAG-G-ATCGACAGCACACAGAG--GG-GGA-CCCAACCG-ATC-CTCGA
833 GA---TCCTCGGC--TTGCGCATC-CCAGCCCTCTG-GCCGGCTGAGCGC--CCGCA-CGCTCGT
* *
15136362 CTGG
888 TTCG
** * * *** * * * * * * *
15136366 TGCATCCCGCCCCTCT-GGCCGGCTGAGTGC---CCACACG-CT-CG-TTTCGTGGGTTGACATA
1 TGGGT--TG--ACT-TAGGCATACGGAGTTCATTCC-CA-GTCTAAGCATACG-GAGTT--CATT
** * ** * * * * ** * ** * * * ** *
15136424 GGCA-TAC-AGAGTTCATTCC-CAGTCTAAGCATAC-GAAGTTCAT--T---CCCAGTC-TAAGA
56 CCCAGT-CTA-AGATCAAACCGGA-CCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGC
* ** * **** *** * ** * *
15136479 TCGAACCGCAAAAAGTTTTGAAAATCGTGAAAAAAAGTTCATGGGTTGACTTAGGCATACAGACT
118 TGGTGCCGC----ATTTTTCTTCATCG-G---GGCA--CCAT---CCG-C-TCGG---AGA-AC-
** * * * * * *** * * * * *
15136544 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCCGACCGGACTGAGGGTTGCA
163 -C-TGACC-GAC--GGCAT-TGG-G---GTT-CC-G---GAGAT-CGGGGGGGCCGGGGGGTG-T
* * * * *** * * * *
15136609 GCAGCACATGCTAG-GCTCA-GGCATATGCTAGTGCCACATT-TTTCTT-TGTCGGGGCACC-AT
211 GC-GCACATGAT-GTGC-GATGG---GTGCT-G-G-TAC-TTGGCCCTTATAT-TGGCCCCCTAT
** * * * * ** ** ** ** *
15136669 CGCCGGAGC-ATCATCGGAGAACCTGAC-CGACAGTATTG-GGGTTCCG-G-TTATTGGGGGGAT
265 C-CCTCATCAAACCTC-GAGAA-CTCACACCCCCTTAAAGAGCATT-TGAGATT-TT------A-
* * * **** * * * *
15136729 CGGGGGGTTGTG-TGCACAAGATGTGCGATGGGTGCTGGTACTTGGTATTTCTAT-TGGCCTCTT
318 C---AGGTT-TGCTGC-C-AG-T-AGCCATTAAAG-T-GT-C-T-G-A----AATGGGGACACTT
* ** * ** ** * * * **
15136792 ATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTA-C--AGGTTT
365 -T---T-TTCAAA--T---GGTCACAAA--ATCTTGTACA-C-TTCGAGTTTTTAGCTGAATTTT
* * ** * * * * ** * **
15136854 TCTG-CCAGTAG-CAATTAAAGTGTCTGAAATGGGGA-CACTTTTTTCAA--AT-GATCACAAAA
416 TTTGTGCA-T-GCCAACAAAAAT-AC---AA---GGATCACGTCTACCAAGTTTGGGGC-CAAAA
** ** *
15136913 TCTTGTACAC-TTCGAGTTTTTACCTGAATTTTTTTGTGCGTGCCAACAAAAATACAAGGATCAC
471 -C---T-C-CTTTCGA------A----AA---AATT-T---T----A-AAAAAT-C-CCGAAC-C
**
15136977 GTCTATTAAGTTTGGGGCCAAAACTCCTTTCAAAAAATTTTACAAAATTTTGAACCTCAAAAAGT
505 G-C-AAAAAGTTT-----------------C-AAAAA---T-C----------A--T------G-
*
15137042 TTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
527 -------A-----A-AAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
** *
15137107 GACCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCT
579 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
* *
15137172 AAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGTCGTAGT---
644 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC
* * *
15137233 --GCCCGCCCGCCCGCTCGTTTCATCGGTTGTCTTAGGCATACAGAGTTCATTCCCAGTCTAAGA
709 CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * * *
15137296 TTAGATCGGA-TCGAGGGTTGCGGCAGCAGGATTGACAGCACGCAGAAGGTGA-CCGGCCGATCC
774 TCAGACCAGACT-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCC
* * *
15137359 CCGG-TTGGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCG
838 TCGGCTT-GCGCATCCCAGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* ** * *
15137413 TTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGTGGAGTTCATTTCCAGTATAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
** ** * *
15137478 GATCGGATTGGACCGAGGGTTGCGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCAGCATTT
66 GATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * *
15137542 TTCTTCACCGGGGCACCATAGTCGGAGCATCGCCGGAGAACCTGACCGGCGACTTTGGGGTTCC-
131 TTCTTCATCGGGGCACC--A-TC--CGC-T---CGGAGAACCTGACCGACGGCATTGGGGTTCCG
* *
15137606 GACGATC-GGGGGGCGGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTA
187 GA-GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
15137670 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCTTTTAAGATTT
251 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * * *
15137735 TATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAGTGGGGACACTTTATTCAAATGGTCATA
316 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
15137800 AAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
381 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * ** *
15137865 ACGTCTACCCAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAA
446 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAA
*
15137930 AGTTTCAAAAAATCATGAAAAATAGAAAACGAGT-GTCTTGCCAGGAAACTTCACGTGAAGGCTT
511 AGTTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
15137994 AATGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
575 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
15138059 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
640 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * * * *
15138124 TGATCGCCCGCCCGTCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGTGTTCATTCCCGG
705 TG--C-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * ** * * *
15138189 TCTAAGATCGGACCAGACCGGGGGTCGCGGCAGCAAGATTGGTAGCACACAGAGGGTGACCCGGC
767 TCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGAC
* *
15138254 CGATCGTCGGCTTGCGCATCCCA-CCCTTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCG
832 CGATCCTCGGCTTGCGCATCCCAGCCC-TCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
15138314 TAGGTTGACTTAGGCATACGAAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* *
15138379 GATCAAACCGGATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
66 GATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
** * * * * *
15138444 TTCTTCA-CCAGGCACCATCACCAGAGCATCGTCGAAGAACCTGACTGGCGACTTTGGGGTTTC-
131 TTCTTCATCGGGGCACCAT--CC---GC-TCG--G-AGAACCTGACCGACGGCATTGGGGTTCCG
*
15138507 GATGATC-GGGGGGCCGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTA-------C---
187 GA-GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
15138561 --TTGGCCCCATATCCCTCATCAAACCTCGAGAACTCA-AGCCCCCTTAAAGAGCATTTGAGATT
251 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATT
* * * *
15138623 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTAAAATGTGGACACTTTTTTCAAATGGTCGC
315 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
15138688 AAAATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAACACAAGGAT
380 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * * *
15138753 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAGATCCCGAACCACAAA
445 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAA
* ** * * * * *
15138818 AATTTTTGAAAATCGTGAAAAATACAAAATGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTT
510 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
15138883 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
575 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * *
15138948 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCATCTTTCTGGCCGGCGTAG
640 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * * * *
15139013 TGCCCGCCCGTCCGCCCGCCCTCTCGTTTCGTCTGTTGGCTTATGCATGCGGAGTTCATTCCCAG
705 TG--C-CCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** * ** * *
15139078 TCTAAGATTGGACCAGACCGAGGGTTGTAGCAGCAGGATC-AGCAGCACGCAGAGAGGTACCCGA
767 TCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGACCCGA
* * * * * *
15139142 CCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTTAGCGCCTGCACACTCGTTTCG
831 CCGATCCTCGGCTTGCGCATCCCAGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* *
15139203 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
** * * * * * * *
15139268 GATCGGACCGGACCGAGGGTTGCGACAGGACATGCTAGGCTCGAGCATGTGTTGGTGCTGCATTT
66 GATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * ** * *
15139333 TTCTTCGTCGGGGCACCATCGTCGGAGCAACGTCGGAGAACCTTATTGGCGGTATTGGGGTTCCA
131 TTCTTCATCGGGGCACCATC--C---G---C-TCGGAGAACCTGACCGACGGCATTGGGGTTCC-
* * * * *
15139398 GCA-ATC-AGGGGGCCGGGGGGTGTTCGCACATAATGTGCGATGAGTGCTGGTACTTGGCCCTTA
186 GGAGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
15139461 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
251 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
15139526 TACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACA
316 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
15139591 AAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
381 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * *
15139656 AAGTCTACCATGTTTGAGGCCAAAACTCC-TTCTGAAAAAATTTTAAAAAATCCTGAACCGCAGA
446 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTTC-GAAAAAATTTTAAAAAATCCCGAACCGCAAA
* * *
15139720 AAGTTTTAAAAATCATGAAAAATA-CAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTT
510 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
15139784 AAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
575 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * * **
15139849 GCCTAAACCTACCTACCACCCTATCGATCCACAGCTTGTGCATCCTGTCTCTCTGGCCGGTGTAG
640 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
*
15139914 TG-CCCGCCCGCCCG--C-C-CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCT
705 TGCCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * ** * *
15139974 AAGATCAGACCAAAC-CATGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGAGGGACCC-AGCT
770 AAGATCAGACCAGACTGA-GGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CC
* * * * *
15140037 GATCC-CTGGCTTGCGCATCCCACCCCTCTGGCCGGCTAAGCGTCCGCACACTCGTTCCG
833 GATCCTC-GGCTTGCGCATCCCAGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* *
15140096 GGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
** * * *** * * * *
15140161 GATCGGACCTGATCGAGGGTTGTAGCAGCACATGCTGGGCTCGGACAGGTGCTGGGGCTGCATTT
66 GATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
*** * * * *
15140226 TTCTTTGCCTGGGCACCATCGCCAGAGCACCGCCGGACAACCTGACCGGCGGCATTGGGGTTCC-
131 TTCTTCATCGGGGCACCAT--CC---G---C-TCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * * *
15140290 GACGATCGGGGGGGCCAGGGGGTGTGTGCACAT-ATGTGCTATGGGTTCTGGTACTTGGCCCTTA
187 GA-GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
15140354 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTT
251 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * *
15140419 TACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAACGAGGACACTTTTTTCAAATTGTCACA
316 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
15140484 AAATGTTGTACAATTCGAGTTTTTAGCTGAATTTTTTGGTGCATGCCAGCAAAAATACAAGGATC
381 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
*
15140549 ATGTCTACCAAGTT
446 ACGTCTACCAAGTT
15140563 CAGGGCTTCA
Statistics
Matches: 10569, Mismatches: 1879, Indels: 1656
0.75 0.13 0.12
Matches are distributed among these distances:
883 3 0.00
884 49 0.00
885 39 0.00
886 567 0.05
887 196 0.02
888 693 0.07
889 1052 0.10
890 89 0.01
891 383 0.04
892 50 0.00
893 616 0.06
894 67 0.01
895 54 0.01
896 36 0.00
897 221 0.02
898 178 0.02
899 229 0.02
900 465 0.04
901 675 0.06
902 1075 0.10
903 393 0.04
904 409 0.04
905 50 0.00
906 112 0.01
907 101 0.01
908 200 0.02
909 90 0.01
910 145 0.01
911 116 0.01
912 136 0.01
913 183 0.02
914 42 0.00
915 12 0.00
916 13 0.00
917 13 0.00
918 39 0.00
919 28 0.00
920 9 0.00
921 23 0.00
922 29 0.00
923 19 0.00
924 45 0.00
925 42 0.00
926 44 0.00
927 17 0.00
928 34 0.00
929 60 0.01
930 26 0.00
931 48 0.00
932 38 0.00
933 42 0.00
934 22 0.00
935 20 0.00
936 56 0.01
937 51 0.00
938 93 0.01
939 37 0.00
940 21 0.00
941 7 0.00
942 6 0.00
943 18 0.00
944 9 0.00
945 13 0.00
946 12 0.00
947 7 0.00
948 4 0.00
949 8 0.00
950 12 0.00
951 12 0.00
952 5 0.00
953 2 0.00
954 4 0.00
955 1 0.00
956 4 0.00
957 7 0.00
958 8 0.00
959 27 0.00
960 21 0.00
961 15 0.00
962 17 0.00
963 14 0.00
964 1 0.00
966 1 0.00
969 1 0.00
971 1 0.00
972 6 0.00
973 2 0.00
974 5 0.00
975 11 0.00
976 4 0.00
977 8 0.00
978 13 0.00
979 8 0.00
980 15 0.00
981 22 0.00
982 11 0.00
983 15 0.00
984 4 0.00
985 13 0.00
986 5 0.00
987 5 0.00
990 1 0.00
991 2 0.00
992 10 0.00
993 1 0.00
994 3 0.00
995 3 0.00
996 1 0.00
997 1 0.00
999 3 0.00
1000 1 0.00
1001 5 0.00
1002 2 0.00
1003 2 0.00
1004 3 0.00
1005 9 0.00
1006 1 0.00
1008 2 0.00
1009 1 0.00
1010 4 0.00
1011 6 0.00
1012 97 0.01
1013 6 0.00
1014 25 0.00
1015 16 0.00
1016 3 0.00
1017 6 0.00
1018 4 0.00
1019 1 0.00
1020 12 0.00
1021 5 0.00
1022 9 0.00
1023 2 0.00
1024 116 0.01
1025 181 0.02
1026 132 0.01
1027 331 0.03
1028 113 0.01
1029 112 0.01
1030 107 0.01
1031 119 0.01
1032 154 0.01
1033 119 0.01
1034 59 0.01
1035 52 0.00
1036 49 0.00
1037 48 0.00
1038 68 0.01
1039 87 0.01
1040 79 0.01
1041 55 0.01
1042 76 0.01
1043 101 0.01
1044 84 0.01
1045 115 0.01
1046 77 0.01
1047 69 0.01
1048 62 0.01
1049 48 0.00
1050 44 0.00
1051 59 0.01
1052 39 0.00
1053 40 0.00
1054 26 0.00
1055 38 0.00
1056 42 0.00
1057 41 0.00
1058 39 0.00
1059 32 0.00
1060 211 0.02
1061 60 0.01
1062 57 0.01
1063 44 0.00
1064 56 0.01
1065 55 0.01
1066 43 0.00
1067 55 0.01
1068 72 0.01
1069 50 0.00
1070 26 0.00
1071 36 0.00
1072 240 0.02
1073 13 0.00
1074 28 0.00
1075 23 0.00
1076 7 0.00
1077 10 0.00
1078 39 0.00
1079 23 0.00
1080 5 0.00
1081 13 0.00
1082 11 0.00
1084 2 0.00
1088 6 0.00
1089 6 0.00
1091 10 0.00
1095 23 0.00
1096 32 0.00
1097 3 0.00
1098 6 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (891 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAAACCGGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCATCGGGGCACCATCCGCTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGAGATCGGG
GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
AGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAA
ATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCA
CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCCGCCCG
CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
AGACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTG
CGCATCCCAGCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
Found at i:15134241 original size:902 final size:898
Alignment explanation
Indices: 15126396--15135466 Score: 9841
Period size: 902 Copynumber: 10.1 Consensus size: 898
15126386 AAAAAGTTCA
* *
15126396 TGGGTTGACTTAGGCATACAGACTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
15126461 GATCCGATCGGACCGAGGGTTACAGCAGCACATGCTAGGCTCAGGCATATGCTGGTGCCACATTT
66 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
** * * * * * *
15126526 TTCTTTGTCGGGGCACCATCGCCGGAGCATCA-TCGGAGAACCTGACCGACAGTATTGGGGTTTC
131 TTCTTCATCGGGGCACCATCGCTGGAGCATCACTCAGAGAACCTGACCGGCGGCATTGGGGTTCC
*** * * * * ***
15126590 GGTTATTGGGGGGATCGGGGGGGTGTGTGCACAAGATGTGCGATGGGTGCTAGTACTTGGTATTT
196 GACGATCGGGGGG-TC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * * *
15126655 CTATTGGCCTCTTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATT
259 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * *
15126720 TTACAGGTTTTCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCAC
324 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
15126785 AAAATCTTGTACACTTCGAGTTTTTACCTGAA-TTTTTTGTGCGTGCCAACAAAAATACAAGGAT
389 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* ** * * * *
15126849 CACGCCTATTAAGTTTGGGGCCAAAACTCCTTTCAAAAAATTTTACAAAATTTTGAACC-TCAAA
454 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGAACCGT-AAA
* *
15126913 AAGTTTCAAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
518 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
** *
15126978 AAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCACATAGAAATATGAAGATGT
583 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * *
15127043 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAG
648 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* *
15127108 T--------GCCTGCCCGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
713 TGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
15127165 AGA-TCAGA-TCGGATCGAGGGTTGCGGCAGCAGGATTGACAGCACGCAGAAGGTGA-CCGGCCG
778 AGATTCA-ACT-GAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCG
* *
15127227 ATCCCCGG-TTGGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCG
841 ATCCTCGGCTT-GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* ** * *
15127285 TTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGTGGAGTTCATTTCCAGTATAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** * * **
15127350 GATCGGATTGGACTGAGGGTTGTGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGTAGCATTT
66 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * * *
15127414 TTCTTCACCGGGGCACCATAGTTGGAGCATCGC-CGGAGAACCTGACCGGCGGCTTTGGGGTTTC
131 TTCTTCATCGGGGCACCATCGCTGGAGCATCACTCAGAGAACCTGACCGGCGGCATTGGGGTTCC
*
15127478 GACGATCGGGGGG-CGGGGCGGTGTGCGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTA
196 GACGATCGGGGGGTCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
15127542 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCTTTTAAGATTT
260 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * * *
15127607 TATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAGTGGGGACACTTTATTCAAATGGTCATA
325 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
15127672 AAATCTTGTACACTTCGTGTTTTTAGATGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
390 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * * *
15127737 ACGTCTACCCAGTTTGGGGCCAAAACTTCTTTCAAAAAAATTTAAAAAAATCTTGAATCGTAAAA
455 ACGTCTACCAAGTTTGGGGCCAAAAC-TCCTTCCAAAAAATTTTAAAAAATCTCGAACCGTAAAA
*
15127802 AGTTTCAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAGGAAACTTCACGTGAAGGCTT
519 AGTTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* *
15127867 AATGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCACACAGAAATATGAAGATGT
583 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
15127932 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
648 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-
* * * * * *
15127997 TGATCGCCCACCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGTGTTCATTTCCTG
712 -G-T-GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * ** * *
15128062 TCTAAGA-TCGGAC-CAGACCGGGGGTCGCGGCAGCAAGATCGGTAGCACACAGAGGGTGACCCG
774 TCTAAGATTC-AACTGA-ACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCG
* * * *
15128125 GCCGATCGTCGGCTTGCGCATCCCACCCTTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCG
837 ACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
15128187 TAGGTTGACTTAGGCATACGAAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15128252 GATCAAACCGGATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATATGCTGGTGCCCGCATT
66 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CCGCATT
** ** ** * * * *
15128317 TTTCTTCA-CCAGGCACCATTACCAGAGCATC-GTC-GAAGAACCTGACTGGCGACTTTGGGGTT
130 TTTCTTCATCGGGGCACCATCGCTGGAGCATCACTCAG-AGAACCTGACCGGCGGCATTGGGGTT
* * * *
15128379 TCGATGATCGGGGGGCCGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTA-------C--
194 CCGACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* **
15128435 ---TTGGCCCCATATCCCTCATCAAACCTCGAGAACTCAGGCCCCCTTAAAGAGCATTTGAGATT
259 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* *
15128497 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGTGGACACTTTTTTCAAATGGTCAC
324 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
*
15128562 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAACACAAGGAT
389 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * **
15128627 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAGATCCCGAACCACAAA
454 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGTAAA
** * * * * *
15128692 AA-TTTTGAAAATCGTGAAAAATACAAAATGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTT
518 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
15128756 AAGGGACCATTGTATGAATTTACAAGCCAT-AAAATGGCATTGGCACACAGAAATATGAAGATGT
583 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * *
15128820 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCATCTTTCTGGCCGGCGTAG
648 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAG
* * * *
15128885 TGCCCGCCTGCCCGCCCGGCCGCTCGTTTCGTCTGTTGGCTTATGCATGCGGAGTTCATTCCCAG
713 TG--C-CC-GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
** * * * *
15128950 TCTAAGATTGGAC-CAGACCGAGGGTTG-TAGCAGCAGGATC-AGCAGCACGCAGAGAGGTACCC
774 TCTAAGATTCAACTGA-ACCGAGGGTTGCGA-CAGCAGGATCGA-CAGCACGCAGAGGGGGACCC
* * * * *
15129012 GACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTTAGCGCCTGCACACTCGTTTCG
836 GACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* *
15129075 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15129140 GATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGTTGGTGCTGCATTT
66 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * ** *
15129205 TTCTTCGTCGGGGCACCATCG-TCGGAGCA--ACGTCGGAGAACCTTATTGGCGGTATTGGGGTT
131 TTCTTCATCGGGGCACCATCGCT-GGAGCATCAC-TCAGAGAACCTGACCGGCGGCATTGGGGTT
* * * * * *
15129267 CC-AGCAATCAGGGGGCCGGGGGGTGTTCGCACATAATGTGCGATGAGTGCTGGTACTTGGCCCT
194 CCGA-CGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
*
15129331 TATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
258 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
15129396 TTTACAGGTTTGCTGGCAGTAGCCACTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGATCA
323 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
15129460 CAAAATCTTGTACACTTCGAGTTTTTAGTTGAA-TTTTTTATGCATGCCAAC-AAAATACAAGGA
388 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
* * * * * *
15129523 TCAAGTCTACCATGTTTGAGGCCAAAACTCATTCTGAAAAAATTTTAAAAAATC-CTGAACCGCA
453 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAAAATTTTAAAAAATCTC-GAACCGTA
* * * *
15129587 AGAAAGTTTGAAAAATCATG-AAAACACAAAACGAGTC-TCTTGCCATGAAACTTCACGTCAAGG
516 A-AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
*
15129650 CTTAAGGGACCATTGTATGAATTTACACGCCATATAAAATGGCATTGGCACACAGAAATAATGAA
580 CTTAAGGGACCATTGTATGAATTTACAAGCCATA-AAAATGGCATTGGCACACAGAAAT-ATGAA
* * * *
15129715 GAATGTGCCTAAACCCTAACCTACCACCCTATCGATTCCACAGCTTG-TCATACTGTCTCTCTGC
643 G-ATGTGCCTAAACCC--ACCTACCACCCTATCGA-TCCACGGCTTGCGCATCCCGTCTCTCTG-
** * * *
15129779 GCCGGTGTAAGTGCCCCGCCCGCCCGCCCGCTCCTTTTTGTCGGTTGGCTTAGGCCAATAACAGA
703 GCCGACGT-AGTG-CCCGCCCGCCCGCCCGCT-CGTTTCGTCGGTTGGCTTAGG-C-AT-ACGGA
* ** *
15129844 GTTTCATTCCCAGTCTAGTGATT-AGACCAAACC-ATGGGTTGTGCG-CAGCAGGATCG-TAGCA
762 G-TTCATTCCCAGTCTA-AGATTCA-ACTGAACCGA-GGG-T-TGCGACAGCAGGATCGACAGCA
* * * * *
15129905 CGCA-AGAGGGACCCCAGCTGATCCT-GGCTTGGCGC-TCCCATCTCCTTCTGGCCGGCCCCTAA
821 CGCAGAGGGGGACCCGA-CCGATCCTCGGCTT-GCGCATCCCA-C-CCCTCTGGCCGG---CTGA
** * *
15129967 GCATCCGCTACACTCGTTCCG
879 GCGCCCGC-ACGCTCGTTTCG
* *
15129988 GGGGTTGACTTAGGCATAC-GAATTCATT-CCAGTC-AAGCAATA-GGAGTTCATTCCCAGTCTA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC-ATACGGAGTTCATTCCCAGTCTA
* * ** *
15130049 A-AT-AGACCTGATCGAGGGTTGTAGCAGCACATGCT-GGC-C-GGCA-GTGCTGG-GCTGCATT
65 AGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * * * ***
15130107 TTTCTTCGTCGATCGCGGACAACCATCCGATCGAGC-TAACGTCGGAGAACTAGGCTTATTGTGT
130 TTTC-T--TC-ATCG-GGGC-ACCAT-CGCTGGAGCATCAC-TCAGAGAAC----C----TGACC
* * **
15130171 GCGCGGCCATATCTGAAAGGGTTCTGGC-ATCGGGGGCGTCTGGGGTTTGTGCGCACATGATTGT
179 G-GCGG-C--AT-TG---GGGTTCCGACGATCGGGGG-GTC-GGGGGGTGTGCGCACATGA-TGT
* * *
15130235 GCGATGGGTGCTGGTACTTGACCCTTATATTGGCACCCTATCCCTCATCAAAACCTTGTGAGAAA
233 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACC-T-CGAG-AA
*
15130300 CTCACA-CCCC-TAATGAGCATTTGAGATTTTAC-GCGTTCTG-TGGCCAGTAGCCACTATAAAG
294 CTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG-GTT-TGCT-GCCAGTAGCCA-T-TAAAG
** **
15130361 TGTCTGAAATGGGGACAACTTTTTGAAAATAATCACAAAATCTTGTACACTTCGAGTTTTTAGCT
354 TGTCTGAAATGGGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
* *
15130426 GAATTTTTTTGTGCATGCCCAAAAAAAAT-CAATGGATGCAAGTCTACCAAG-TTGGGGCCAAAA
418 GAATTTTTTTGTGCATG-CCAACAAAAATACAA-GGAT-CACGTCTACCAAGTTTGGGGCCAAAA
* * * * ** * *
15130489 ATCATTTCCGAAAAATTTT-AAAAATCCCGAACCCAACAAAAGTTT-GAAAATCGTGAAAAATAG
480 CTC-CTTCCAAAAAATTTTAAAAAATCTCGAACCGTA-AAAAGTTTCAAAAATCATGAAAAATAG
*
15130552 -AAACGAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
543 AAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* ***
15130616 GCCATAAAAATGGCATTCGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
608 GCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATC
* * * *
15130681 GATCTACGGCTTGCGCATCCCGTCTCCCTGGCCGACGTAGTGCCCCGCTCGCCCGCCCGCTCATT
673 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG-CCCGCCCGCCCGCCCGCTCGTT
* * *
15130746 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTTACA-TCAGA-TCAGACCGAGGGTT
737 TCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTCA-ACTGA-ACCGAGGGTT
** *
15130809 GCGACAGCAGGATCGACAGCACGTGGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCGCCC
800 GCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCTCGGCTTGCGCATCCCACCC
* * * *
15130874 GATC--CCCGGCTTGCGCATCCCGC-C-C-C---TC-
865 -CTCTGGCCGGC-TGAGC-GCCCGCACGCTCGTTTCG
** * * * * * * *** *
15130902 T-GGCCGGCTGAGCGC--CCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
1 TGGGTTGACTTAG-GCATACGGA-GTTC-ATTC-CCAG-T--C-TAAGCATACGGAGTTCATTCC
* * * * * ** *
15130964 TAGTCTAAGATCGGACCAGACCAAGGGTTGCCGCAGCACATGCTGTTCTCGAGCATGTGCTGGTG
58 CAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTG
* * * * * * ** *
15131029 CCACATTTTTCTTCGTCGAGGCACCATCGCCGGAGCATC-GTCGGAGAACCTGACC--AAGAATT
123 CCGCATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCACTCAGAGAACCTGACCGGCGGCATT
* * **
15131091 GGGGTTCTGGCGATCGAGGGGCCCGGGGAGGTGTGCGCACATGAT-TGCGATGGGTGCTGGTACT
188 GGGGTTCCGACGATCG-GGGGGTCGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACT
*
15131155 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAA-CTCAAGAACTCACACCCCCTTAAAGAGCAT
251 TGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA-
*
15131219 TTTGAAGATTTTAACAGGTTTGCTGCCAGTA-CCGTTAAAGTGTCCTGAAATGGGGACACTTTTT
315 TTTG-AGATTTT-ACAGGTTTGCTGCCAGTAGCCATTAAAGTGT-CTGAAATGGGGACAC-TTTT
* * *
15131283 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTTAAGCT-AAATGTTTTGTGCATG-CAT
376 TTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTT-AGCTGAATTTTTTTGTGCATGCCAA
* * *
15131346 C-AAAATACAAGGATCAATGTCTACCAAAGATTGAGGCCAAAAAC-CCTTCCAAAAAATTTT-AA
439 CAAAAATACAAGGATC-ACGTCTACC-AAGTTTGGGGCC-AAAACTCCTTCCAAAAAATTTTAAA
*
15131408 AAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAAGGAGTCGTCTTGCCATGAA
501 AAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* *
15131472 ACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTTACCAGCCATAAAAAATGGCATTGGCA
566 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA-TTTACAAGCCAT-AAAAATGGCATTGGCA
**
15131537 CGTAGAAAATATGGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
629 CACAG-AAATAT-GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
15131602 CCGTCTCTCTAGCCGGCGTAGTACCCGCCGCCCGCACGCGCCGCCCGCTCGTTTTCGTTGGTTGG
692 CCGTCTCTCTGGCCGACGTAGT-------GCCCGCCCGC-CCGCCCGCTCG-TTTCGTCGGTTGG
* * * *
15131667 CTTAGGCATAACGGCGTTCATTCCCAGTCTAAGA-TCAGACCGGACTGAGGGTTG-GCAGCAGCA
748 CTTAGGCAT-ACGGAGTTCATTCCCAGTCTAAGATTCA-ACTGAACCGAGGGTTGCG-A-CAGCA
* * **
15131730 TGGATCGGCAAGCACGCAGA-GGGGACCCTGATCGATCCT-GGCTTGCGCATCTGACCCCTCTGG
809 -GGATCGAC-AGCACGCAGAGGGGGACCC-GACCGATCCTCGGCTTGCGCATCCCACCCCTCTGG
* * *
15131793 CCGTCTGAGCACCCGCAC-CTCGTTTCA
871 CCGGCTGAGCGCCCGCACGCTCGTTTCG
*
15131820 TGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * *
15131885 GATCAGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGGCGCATTT
66 GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * * * * *
15131950 TTC-TCGTCGAGGCACCATCGC-CGACCATC-GTC-GAAGAACCAGACCGACGACATTGGGGCTC
131 TTCTTCATCGGGGCACCATCGCTGGAGCATCACTCAG-AGAACCTGACCGGCGGCATTGGGGTTC
** * * * *
15132011 CGGTGATCGGGGGGCCCGAGGGG-GTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCTTT
195 CGACGATCGGGGGG-TCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
15132075 ATATTGGCCCCCT-TCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA-T
259 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
15132138 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTCTTCAAATGGTGA
324 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT-TTCAAATGGTCA
* * * *
15132203 TAAAATCTTGTACACTCCAAGTTTTTAGCTGAATTTGTTTGTTGCATGCCAAC-AAAATACAAGG
388 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCCAACAAAAATACAAGG
* * *
15132267 ATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCATA
452 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGTA
** * * *
15132332 AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGAC
516 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * **
15132397 TTAGGGGACCATTGTATGAATTTACAAGCCATCAAAATGGCATTGGCACGTAGAAATATGAAGAT
581 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
* * * *
15132462 ATGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCTGACGT
646 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * *
15132527 AGTGCCCGGCCCGCCTGCCCCGTTCGTTTCGTC-ATGTGGCTTAGGCTTACGGAGTTTATTCCCA
711 AGTGCCC-GCCCGCCCG-CCCGCTCGTTTCGTCGGT-TGGCTTAGGCATACGGAGTTCATTCCCA
* * * * ** * *
15132591 GTC-AAAAATCAAACCTG-ACTGA-GGTTGTGGTAGCAGGATCG-TAGCACGTAGAGGGGGACCC
773 GTCTAAGATTC-AA-CTGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCC
* * * * * * * *
15132652 GATCGATCCTCAGCTTGTGCAT-CC-GCCCTCTAGTCGGTTGAGCGCCCGCACGCTTGTTTCG
836 GACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * *
15132713 TGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATATGGAGTTCATTCCCCCGTCTA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCCAGTCTA
* * * * * **
15132778 AGATCAAACAGGATCGAGGGTTTACGGCAGCACATGCTAGGCTCAAGCATGTGCTGGTGCCGCAT
65 AGATCAGACCGGACCGAGGG-TTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCAT
* *
15132843 TTTTCTTCATCGGGGCACCATCGCT---G---------GAGAACCTGACCGACGGCATTGGGATT
129 TTTTCTTCATCGGGGCACCATCGCTGGAGCATCACTCAGAGAACCTGACCGGCGGCATTGGGGTT
* * * * *
15132896 CCGGA-GATCGGGGGGGCCGGGGGGTGTGCGCAAATGATGTGTGATGGGTTCTGGTACTTGGCCT
194 CC-GACGATC-GGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
** * * *
15132960 TTATATTGAACCACTATCCCTCATCAAACCTTGAGAAATCACACCCCCTTAAAGAGCATTTGAGA
257 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
15133025 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACCTTTTTCAAATGGTC
322 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * ** **
15133089 AAAAAATCTTGTACGCTTTGAGTTTTTAGCTGAA-TTTTTTGCACACCCCAACAAAAATACAAGG
387 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * *
15133153 ATCACGTCTACCAACTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACTGCA
452 ATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCTCGAACCGTA
* *
15133218 GAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGC
516 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
15133283 TTAAGGGACCATTATATGAATTTACAAGCCAAAAAAATGGCATTCGCACACAGAAATATGAAGAT
581 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
* * * * *
15133348 GTGCCTAAACACACCTACCACCCTATCGATCCACAGCTTGCGCATCTCGTCTCTCTGGTCGGCGT
646 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * * *
15133413 AGTGCCCGCCCGCCCACCCGCTCGTTTTGTCAGTTGGCTTAGACGTACGGAGTTCATTCCCAGTC
711 AGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * *
15133478 TAAGATTCAACTGAACCGAGGGTTGCGACTGCAGGATTGACAGCATGCAAAGGGGGACCC-AGCC
776 TAAGATTCAACTGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGA-CC
* * * *
15133542 GATCCTCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACACTCATTTCG
840 GATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
*
15133601 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCTA-TCTT
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCC-AGTCTA
* * * ** * * **
15133665 AGATCAGATCGGATCGAGGGTTGCGGCAGCACAAGAAGGGCTCAGGCATGTGTTGGTGTTGCATT
65 AGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * *
15133730 TTTCTTCATCGGGGCACCATCGCTAGAGTATCACCCAG-GAACCTGACCGGCGGCATTGGGGTTC
130 TTTCTTCATCGGGGCACCATCGCTGGAGCATCACTCAGAGAACCTGACCGGCGGCATTGGGGTTC
* * * *
15133794 CGACGATAGGGGTGGTCGAGGGGGGTTGTGCGCACATGATTTGCGATGGGTGCTGTTACATGGCC
195 CGACGATCGGGG-GGTC--GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* * *
15133859 CTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACACCTCCTTAAAGTGCATTTGAG
256 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* * *
15133924 ATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTGTCAGAAATGGGGACACTTTTTTCGAATGGT
321 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGT
* *
15133989 CACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAG
386 CACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAG
* ** * * ** ** *
15134054 GATCACGTCTACCAACTTTATGGCCAAAAATACTTCCAAAAAAAAATTAAAAAATCTAAAATCGT
451 GATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCGT
* * * * *
15134119 AAAAAGTTTCAAAAATCAAGAAAAACAGAAAATGAGTCGTCTTGCCATGAAACTTTACGTCAAGG
515 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* **
15134184 CTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
580 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGA
* * *
15134249 TGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-TTGTG-ATCCCGTCTCTCTGGCTGACG
645 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACG
* *
15134312 TAGTGCCCACCCGCCCATCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCC
710 TAGTGCCCGCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * ** * * * *
15134377 CAGTCTAAGATTGGATCAGAA-CAAGGGTTATGATAGTAGGATTGACAAG-ACGTAGAGGGGGAC
771 CAGTCTAAGATT-CAACTGAACCGAGGGTTGCGACAGCAGGATCGAC-AGCACGCAGAGGGGGAC
* * * * ** *
15134440 CTGATCGATCCCCGTCTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCG
834 CCGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * * *
15134505 TGGGTTGACTTAGGCATACAGAATTCATTCCTAGTCTAAGCATAAGAAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * ** *
15134570 GATC-GAACCGGACCGACGATTGCGGCAGCACATGCTGGGCTTGGGCATGTGCTGCTGTTGTATT
66 GATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATT
* * * ** * * * * * *
15134634 TTTCTTC-GCTGGGGCACCATCACCGGAGCATCGTTGA-AGAAGCTAACCGACAGCATTGGGGCT
130 TTTCTTCATC-GGGGCACCATCGCTGGAGCATCACTCAGAGAACCTGACCGGCGGCATTGGGGTT
* * *
15134697 CCGGCGATCGGGGGGATCGGGGGGTGTGTGCGCACATGATGTGCGATAGGTGCTAGTACTTGGCC
194 CCGACGATCGGGGGG-TC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCC
* *
15134762 CTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAG
256 CTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
* *
15134827 ATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATAGGGG-TACTTTTTTCAAATGG
321 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGGACACTTTTTTCAAATGG
* *
15134891 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG-AAAAAAAAATACAA
385 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
** * * *
15134955 GGATCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCG
450 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCTCGAACCG
** * **
15135020 TAAAAAGTTTTGAAAATCGTTTAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
514 TAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAG
** *
15135085 GCTT-AGGGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAA
579 GCTTAAGGG-ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAA
* *
15135149 GATGTGCCTAAA-CCACCCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTCTGGTCG
643 GATGTGCCTAAACCCA-CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG
* * * * *
15135213 ACGTAGTGCCTGCCTGCCCGCCC-ATCATTTTGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
707 ACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CC
** * * * * * * * * *
15135277 CAGTCTAAGATTTGGACCGGACTGAGGGTTGCGGCAACAGAATCGATAGCACGCAGAGGGGCACT
771 CAGTCTAAGA-TTCAACTGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACC
* * * * * * * *
15135342 CGACCGATCCCCGGCTCGCTCATCCCGCCCCTCTGGCTGGCTGAGCGCGCTGCACGCTTGTTTCA
835 CGACCGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC-CCGCACGCTCGTTTCG
* *
15135407 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTTTAAGCATACGGAGTTCATTCCCAG
1 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
15135467 GTGAAATAAT
Statistics
Matches: 6947, Mismatches: 923, Indels: 611
0.82 0.11 0.07
Matches are distributed among these distances:
883 3 0.00
884 48 0.01
885 40 0.01
886 559 0.08
887 192 0.03
888 690 0.10
889 388 0.06
890 8 0.00
891 228 0.03
892 22 0.00
893 78 0.01
894 42 0.01
895 49 0.01
896 37 0.01
897 209 0.03
898 161 0.02
899 222 0.03
900 352 0.05
901 268 0.04
902 784 0.11
903 394 0.06
904 398 0.06
905 21 0.00
906 86 0.01
907 81 0.01
908 173 0.02
909 90 0.01
910 142 0.02
911 107 0.02
912 118 0.02
913 180 0.03
914 27 0.00
915 4 0.00
916 1 0.00
917 5 0.00
918 8 0.00
919 14 0.00
920 9 0.00
921 15 0.00
922 32 0.00
923 18 0.00
924 46 0.01
925 34 0.00
926 44 0.01
927 17 0.00
928 25 0.00
929 60 0.01
930 25 0.00
931 48 0.01
932 35 0.01
933 37 0.01
934 21 0.00
935 16 0.00
936 50 0.01
937 49 0.01
938 89 0.01
939 33 0.00
940 15 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (898 bp):
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCATCGGGGCACCATCGCTGGAGCATCACTCAGAGAACCTGACCGGCGGCATTGGGGTTCC
GACGATCGGGGGGTCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
AATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
CGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGC
CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TTCAACTGAACCGAGGGTTGCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCT
CGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
Found at i:15134557 original size:26 final size:26
Alignment explanation
Indices: 15134518--15134570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15134508 GTTGACTTAG
*
15134518 GCATACAGAATTCATTCCTAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
15134544 GCATA-AGAAGTTCATTCCCAGTCTAA
1 GCATACAGAA-TTCATTCCCAGTCTAA
15134570 G
1 G
15134571 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:15136462 original size:26 final size:26
Alignment explanation
Indices: 15136425--15136477 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15136415 GTTGACATAG
15136425 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15136451 GCATAC-GAAGTTCATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15136477 G
1 G
15136478 ATCGAACCGC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 1 0.04
26 25 0.96
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15136563 original size:26 final size:26
Alignment explanation
Indices: 15136533--15136585 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15136523 GTTGACTTAG
15136533 GCATACAGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
* *
15136559 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAGTCTAA
15136585 G
1 G
15136586 ATCCGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAGTCTAA
Found at i:15138364 original size:26 final size:26
Alignment explanation
Indices: 15138327--15138379 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15138317 GTTGACTTAG
*
15138327 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15138353 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15138379 G
1 G
15138380 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15138528 original size:901 final size:897
Alignment explanation
Indices: 15136520--15140562 Score: 5421
Period size: 889 Copynumber: 4.5 Consensus size: 897
15136510 AAAAAGTTCA
*
15136520 TGGGTTGACTTAGGCATAC-AGACTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
1 TGGGTTGACTTAGGCATACGA-AGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
15136584 AGATCCGACCGGACTGAGGGTTGCAGCAGCACATGCTAGGCTCAGGCATATGCTAGTGCCACATT
65 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATT
** * * * *
15136649 TTTCTTTGTCGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGACCGAC-AGTATTGGGGTTC
130 TTTC-TTCACCGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGACT-TTGGGGTTC
*** * * * * ***
15136713 CGGTTATTGGGGGGATCGGGGGGTTGTGTGCACAAGATGTGCGATGGGTGCTGGTACTTGGTATT
193 CGACGATCGGGGGG-CCGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * * * *
15136778 TCTATTGGCCTCTTATCCCTCATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGAT
256 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
* * *
15136843 TTTACAGGTTTTCTGCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCA
321 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCA
* *
15136908 CAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTGTGCGTGCCAACAAAAATACAAGGA
386 CAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
** * * ** *
15136973 TCACGTCTATTAAGTTTGGGGCCAAAACTCCTTTC-AAAAAATTTTACAAAATTTTGAACCTCAA
451 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAA
* *
15137037 AAAGTTTC-AAAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
516 AAAGTTTCTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
** *
15137101 TTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGCATTGGCACATAGAAATATGAAGAT
581 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
*
15137166 GTGCCTAAACCCTCCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGTCGT
646 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGT
* *
15137230 A--G-TGCCCGCCCGCCCGCTCGTTTCATCGGTTGTCTTAGGCATACAGAGTTCATTCCCAGTCT
710 AGTGATGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCT
* * * * * *
15137292 AAGATTAGATCGGATCGAGGGTTGCGGCAGCAGGATTGACAGCACGCAGA-AGGTGA-CCGGCCG
775 AAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGTGACCCGGCCG
* *
15137355 ATCCCCGG-TTGGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCG
840 ATCCCCGGCTT-GCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCG
* * ** * *
15137413 TTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATGTGGAGTTCATTTCCAGTATAA
1 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
** *
15137478 GATCGGATTGGACCGAGGGTTGCGGCAGCACATGCT-GGCTCGGGCATGTGCTGGTGCAGCATTT
66 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTT
* * *
15137542 TTCTTCACCGGGGCACCATAGTCGGAGCATCGCCGGAGAACCTGACCGGCGACTTTGGGGTTCCG
131 TTCTTCACC-GGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGACTTTGGGGTTCCG
* *
15137607 ACGATCGGGGGGCGGGGGGGTGTGCGCACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATA
195 ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
15137672 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACTCCCTTAAAGAGCTTTTAAGATTTTA
260 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * *
15137737 TAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAGTGGGGACACTTTATTCAAATGGTCATAAA
325 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
15137802 ATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
390 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
15137867 GTCTACCCAGTTTGGGGCCAAAACTTCTTCCGAAAAAATTTTAAAAAATCTTGAACCGTAAAAAG
455 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAG
* *
15137932 TTTCAAAAAATCATGAAAAATAGAAAACGAGT-GTCTTGCCAGGAAACTTCACGTGAAGGCTTAA
520 TTTCTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
15137996 TGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
585 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
15138061 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG
650 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCG-CGTAGTG
* * *
15138126 ATCGCCCGCCCGTCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACGGTGTTCATTCCCGGTC
714 AT-GCCCG--C--CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * *
15138191 TAAGATCGGACCAGACCGGGGGTCGCGGCAGCAAGATTGGTAGCACACAGAG-GGTGACCCGGCC
774 TAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGTGACCCGGCC
** * * *
15138255 GATCGTCGGCTTGCGCATCCCACCCTTCTGGCCTGCTGAGCGCCCGCACGCTCGTTTCG
839 GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCG
* *
15138314 TAGGTTGACTTAGGCATACGAAGTTCATTCCCATTCTAAGCATACGGAGTTCATTCCCAGTCTAA
1 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
** * * * *
15138379 GATCAAACCGGATCGAGGGTTACGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTT
66 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * *
15138444 TTCTTCACCAGGCACCATCACCAGAGCATCGTCGAAGAACCTGACTGGCGACTTTGGGGTTTCGA
131 TTCTTCACCGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGACTTTGGGGTTCCGA
* *
15138509 TGATCGGGGGGCCGGGGGGTGTGCGCCCATGATGTGCGATGGGTGCTGGTA-------C-----T
196 CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
*
15138562 TGGCCCCATATCCCTCATCAAACCTCGAGAACTCA-AGCCCCCTTAAAGAGCATTTGAGATTTTA
261 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCCTTAAAGAGCATTTGAGATTTTA
* * * *
15138626 CAGGTTTGCTGCCAGTAGCCATTAAAGTCTCTAAAATGTGGACACTTTTTTCAAATGGTCGCAAA
325 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* *
15138691 ATGTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAACACAAGGATCAC
390 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
15138756 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAGATCCCGAACCACAAAAA-
455 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAG
* * * * * * *
15138820 TTTTTGAAAATCGTGAAAAATACAAAATGAGTCATCTTGCCATTAAACTTCACGTGAAGGCTTAA
520 TTTCTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
15138885 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
585 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGC
* * *
15138950 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCTTCCCATCTTTCTGGCCGGCGTAGTG
650 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCC-GCGTAGTG
** * * * * *
15139015 CCCGCCCGTCCGCCCGCCCTCTCGTTTCGTCTGTTGGCTTATGCATGCGGAGTTCATTCCCAGTC
714 -ATG--C--CCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
** ** * *
15139080 TAAGATTGGACCAGACCGAGGGTTGTAGCAGCAGGATCAGCAGCACGCAGAGAGGT-ACCCGACC
774 TAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGTGACCCGGCC
* * *
15139144 GATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTTAGCGCCTGCACACTCGTTTCG
839 GATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCG
* * *
15139203 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAA
1 TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15139268 GATCGGACCGGACCGAGGGTTGCGACAGGACATGCTAGGCTCGAGCATGTGTTGGTGCTGCATTT
66 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTT
* * * * * ** *
15139333 TTCTTCGTCGGGGCACCATCGTCGGAGCAACGTCGGAGAACCTTATTGGCG-GTATTGGGGTTCC
131 TTCTTC-ACCGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGACT-TTGGGGTTCC
* * * * *
15139397 -AGCAATCAGGGGGCCGGGGGGTGTTCGCACATAATGTGCGATGAGTGCTGGTACTTGGCCCTTA
194 GA-CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
15139461 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
258 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
15139526 TACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACA
323 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
*
15139591 AAATCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
388 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * * * *
15139656 AAGTCTACCATGTTTGAGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAGAA
453 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAA
* *
15139721 AGTTT-TAAAAATCATGAAAAATA-CAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTT
518 AGTTTCTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
*
15139784 AAGGGACCATTGTATGAATTTACATGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
583 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGT
* * * *
15139849 GCCTAAACCTACCTACCACCCTATCGATCCACAGCTTGTGCATCCTGTCTCTCTGGCCG-GT-GT
648 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGT
* * *
15139912 -AGTGCCCGCCCGCCCGCCCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAA
713 GA-TGCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15139976 GATCAGACCAAACC-ATGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGAGG-GACCCAGCTGA
777 GATCAGACCAGACCGA-GGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGTGACCCGGCCGA
* * * *
15140039 TCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTAAGCGTCCGCACACTCGTTCCG
841 TCCCCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCG
*
15140096 GGGGTTGACTTAGGCATACGGAA-TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
1 TGGGTTGACTTAGGCATAC-GAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * ** * * * * *
15140160 AGATCGGACCTGATCGAGGGTTGTAGCAGCACATGCTGGGCTCGGACAGGTGCTGGGGCTGCATT
65 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATT
** * * * * * *
15140225 TTTCTTTGCCTGGGCACCATCGCCAGAGCACCGCCGGACAACCTGACCGGCGGCATTGGGGTTCC
130 TTTCTTCACC-GGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGACTTTGGGGTTCC
* * * *
15140290 GACGATCGGGGGGGCCAGGGGGTGTGTGCACAT-ATGTGCTATGGGTTCTGGTACTTGGCCCTTA
194 GACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
*
15140354 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTT
258 TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * * *
15140419 TACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAACGAGGACACTTTTTTCAAATTGTCACA
323 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * *
15140484 AAATGTTGTACAATTCGAGTTTTTAGCTGAATTTTTTGGTGCATGCCAGCAAAAATACAAGGATC
388 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
*
15140549 ATGTCTACCAAGTT
453 ACGTCTACCAAGTT
15140563 CAGGGCTTCA
Statistics
Matches: 2764, Mismatches: 334, Indels: 104
0.86 0.10 0.03
Matches are distributed among these distances:
888 27 0.01
889 654 0.24
890 332 0.12
891 187 0.07
892 115 0.04
893 633 0.23
894 26 0.01
895 2 0.00
896 5 0.00
897 2 0.00
898 3 0.00
899 2 0.00
900 93 0.03
901 388 0.14
902 291 0.11
903 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (897 bp):
TGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTT
TTCTTCACCGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGGCGACTTTGGGGTTCCGA
CGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGT
TTCTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCC
TAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGCGTAGTGAT
GCCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
AGACCAGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGAGGTGACCCGGCCGATCCCC
GGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACACTCGTTTCG
Found at i:15139252 original size:26 final size:26
Alignment explanation
Indices: 15139216--15139268 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15139206 GTTGACTTAG
15139216 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15139242 GCATATGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15139268 G
1 G
15139269 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15140148 original size:26 final size:26
Alignment explanation
Indices: 15140109--15140161 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15140099 GTTGACTTAG
15140109 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
15140135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
15140161 G
1 G
15140162 ATCGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:15142180 original size:12 final size:12
Alignment explanation
Indices: 15142163--15142194 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
15142153 AAGAGGGTTG
15142163 CGGCAGCAGGAT
1 CGGCAGCAGGAT
15142175 CGGCAGCAGGAT
1 CGGCAGCAGGAT
15142187 CGGCAGCA
1 CGGCAGCA
15142195 CGCAGAGGGG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.25, C:0.28, G:0.41, T:0.06
Consensus pattern (12 bp):
CGGCAGCAGGAT
Found at i:15144081 original size:26 final size:26
Alignment explanation
Indices: 15144045--15144097 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15144035 GTTGACTTAG
*
15144045 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15144071 GCATACGGAGTTCTTTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15144097 G
1 G
15144098 ATCGGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15144526 original size:893 final size:886
Alignment explanation
Indices: 15140583--15145314 Score: 5367
Period size: 890 Copynumber: 5.3 Consensus size: 886
15140573 CATCAAGTTC
** * *
15140583 GGCATGTGCTGGTGCCGTATTTTTCTTTATC-GGGCACCAT--C--G-TCGGAGAACCTGACTGG
1 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCGAGCTCGGAGAACCTGACCGA
* * * * *
15140642 CGACATTGGGGTTCCGGCGATCGGGGGTGCCCGGGGGGGTGTGCACACATGATGTGCGATGGGTT
66 CGGCATTGGGGTTCCGACGATCGGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
15140707 ATGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
131 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
15140772 AAGAGCATTTAAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACT
196 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
15140837 TTTTTCAAAT-GTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAA-TTTTTTGTGCATGCCA
261 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * *
15140900 AC-AAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAAATCCTTCCGAAAAAATTTTAAAA
326 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-----AA---TAAAA
* * * *
15140964 AATCTGGAATCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
383 AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
15141029 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCATAT
448 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
* * *
15141094 AGAAATATGAAGATGTGTCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCTCGTC
513 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
* *
15141159 TCTCTGGCCGACGTAGTGCCCGCCTGCCCGTCCTCCTGCTCGTTTCGTCAGTTGGCTTAGGCATA
578 TCTCTGGCCG-CGTAGTGCCCGCCTGCCCG-CCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATA
** * ** * * *
15141224 CGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGTAGCAGGATCGGTAGCACA
640 CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACG
* * * *
15141289 CAGAGGTGGG-CCCGACCGATCCCCGGCTTGCGCATCTCGCCCCTCTGGTCGACTGAGCGCCCGC
705 CAGAGG-GGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGTCGACTGAGCGCCCGC
* * * *
15141353 ACGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAACCATACGGAGTTCA
769 ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCA
* *
15141418 TTCCCAGTGTAAGATCGGACCA-GACTGAGGGTTGC-AGCAGCACATGCTGGGCTCG
834 TTCCCAGTCTAAGATCGGA--AGGAC-GAGGGTTACGA-CAGCACATGCTGGGCTCG
* * * * * * * *
15141473 GGCATGTGCTGGTGTCGCATTTTTCTTCATCGGGGCACCAT----TG-TCGGAGAACTTTAGCTA
1 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCGAGCTCGGAGAACCTGACCGA
* * * * * *
15141533 CAGAATTGGGGTTCTGGCGATC--GAGGGCCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTG
66 CGGCATTGGGGTTCCGACGATCGGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
*
15141596 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
131 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
*
15141661 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACT
196 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* *
15141726 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCA
261 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * * * * *
15141791 TCAAAAATACAAGGATCATGTCTACCAAGATTGAGGCCAAAACCCCTTCTAAAAAAATTTTAAAA
326 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-----CAA---TAAAA
* *
15141856 AATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAAGGAGTCGTCTTGCCATGAAA
383 AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * **
15141921 CTTCACGTGAAGGCTTAAGAGATCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCATGC
448 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
*
15141986 AGAAAATATGGAA-ATGTGCCTAAACCCACCTACCACCCTATCGATCCAGGGCTTGCGCATCCCG
513 AG-AAATAT-GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * *
15142050 TCTCTCTAGCCGGCGTAGTACCCGCCTGCCCCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAG
576 TCTCTCTGGCC-GCGTAGTGCCCGCCTG---CCCG-CCG-CCGCTCGTTTCGTCGGTTGGCTTAG
* *
15142115 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGA-AAGAGGGTTGCGGCAGCAGGATCGGC
635 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCA-AGGGTT----------G-T-GGC
* *
15142179 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCTTGGCTTGCGCATCCCGCCCCTCTG
687 AGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTG
* * * * * * * * *
15142244 GCCGACTGAGGGACCGTACTCTCGTTTCATGGGTTCACTTAGGCTTAAGGAGTTCATTCCCAGTC
752 GTCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTC
15142309 TAAG-AT-C--AG---A----C---C--AGA-C-------CGAGGGTTACGACAGCACATGCTGG
817 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAAGGACGAGGGTTACGACAGCACATGCTGG
15142350 GCTCG
882 GCTCG
*
15142355 GGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCT
1 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG-CG-AG---C-TCGGAGAACCT
* * *
15142420 GACCGGCGGCATTGGGGTTCCGATGATC-GGGGGG-CC--GGGGGTGTGCGCACATGATGTACGA
60 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
15142481 TGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA-C
125 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
15142545 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
190 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * *
15142610 GACACTTTCTTCAAATGGTGACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTGTTTGTG
255 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTGTG
*
15142674 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCGAAAAAAT
319 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-----AA-
* ** *
15142739 TTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTGTCTTGC
378 --TAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
15142804 CATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATCAAAATGGCATT
441 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
15142869 GGCACGCAGAAATATGAAGATATGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCGCA
506 GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
15142934 TCCCATCTCTCTGGCCGACGTAGTG--C-CC-GCCCG-C-CCGTTCGTTTCGTC-ATGTGGCTTA
571 TCCCGTCTCTCTGGCCG-CGTAGTGCCCGCCTGCCCGCCGCCGCTCGTTTCGTCGGT-TGGCTTA
* * * * * *
15142992 GGCTTACGGAGTTTATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGTAGGATCAGC
634 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCGGC
* * * * * *
15143057 AGCACGTAGAGGGGGACCCGATCGATCCCCGACTTACGCATCCCAGCCCTCTGGAT-GGCTGAGC
699 AGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGG-TCGACTGAGC
* **
15143121 GCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACGG
763 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* * * * *
15143186 AGTTCATTCCCAGTCTAAGATC-AAACCGGACTAAGGCTTTCGGCAGCACATGCTGGGCTCG
828 AGTTCATTCCCAGTCTAAGATCGGAA--GGAC-GAGGGTTACGACAGCACATGCTGGGCTCG
* * *
15143247 GGCATGTGCTGGTGCCGTAGTTTTCTTCATCGGGGCACCAT--C--G-TCGGAGAACCTGACCGG
1 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCGAGCTCGGAGAACCTGACCGA
* * * *
15143307 CGGCATTGGGGTTCCGACGATCGGGGGGG-CCAGGTGGGAGTACGCACATGATGTGCGATGGGTG
66 CGGCATTGGGGTTCCGACGATCGGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * *
15143371 CTGGTACTAGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTGACACCCCCTTA
131 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
* * *
15143435 AAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAATGTGTCTGAAATGGGGTCACT
196 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
*
15143500 TCTTTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACC
261 T-TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * ** *
15143564 AAAAAAAAATACAAGGATCACATCTACCAAGTTCAGGGCCAAAACTCCTTTCAAAAAAATTTTAA
325 -AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTC----CAA---TAA
* * *
15143629 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCATCTTGACATGA
381 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* **
15143694 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGTTATTGGCAC
446 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC
*
15143759 ATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
511 ACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * *
15143824 CCTCTCAGGCCAGTGTAATGCCCGCCAGCCCGCTCGTCCGATCGTTTCGTCGGTTGGCATAGGCA
576 TCTCTCTGGCC-GCGTAGTGCCCGCCTGCCCGC-CG-CCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * *
15143889 TACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCAAGGGTTGTGGCAGCAAGATCGGTAGCA
638 TACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCGGCAGCA
* *
15143954 CGCTGAGGGGGACCCGA-CTGATCCCTGGCTTGCGCATCCCACCCCTCTGGTCGACTGAGCGCCT
703 CGCAGAGGGGGACCCGATC-GATCCCTGGCTTGCGCATCCCACCCCTCTGGTCGACTGAGCGCCC
*
15144018 GCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
767 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTT
* * *
15144083 CTTTCCCAATCTAAGATCGGAATGGATCGAGGGTTGCGACAGCACATGCTGGGCTCG
832 CATTCCCAGTCTAAGATCGGAA-GGA-CGAGGGTTACGACAGCACATGCTGGGCTCG
15144140 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGAACCT
1 GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCG-C-GAGC-T---CGGAGAACCT
* * *
15144205 GACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCCCGGGGGGGTCTGGGCACATGATGTGCGA
60 GACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGA
* *
15144270 TGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCCTATCCCCCATCAAA-CTCGAGAACTCACA-
125 TGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * *
15144333 CCCCTTAAAGATCCATTTGAGATATTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
189 CCCCTTAAAGA-GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15144398 AGGACAC-TTTTTCAAATAGTCAC-AAATCTTGTACATTTCGAGTTTTTAGCTGAATTTTTTTAT
253 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15144461 GCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAACCTCCTTCCAAAAAAA
318 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC--AATAA
* * * *
15144526 TTTTAAAATATCCAAACGT-AAAAGATTT-GAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
381 ----AAAATCTCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
15144589 CATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGTATGAATTTACAACCCATAAAAATGGCATT
441 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
15144654 GGCACACAGAAATATGAAGAGGTGCCTAAAACCCACCTACCACCCGTTTACGATCCGCGGCTTGC
506 GGCACACAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCC-TAT-CGATCCACGGCTTGC
** * *
15144719 GC-T-CCGTCTCTCTGGTTAGGCGTAGT----GCCTG--C-CCG-CG--CGTTTCGTTGGTTTGC
568 GCATCCCGTCTCTCTGG--CCGCGTAGTGCCCGCCTGCCCGCCGCCGCTCGTTTCGTCGGTTGGC
* * * *
15144772 TTAGGCATA--GAGTTTCATT-CCA-TCTAAGATTC-GATCAGAACAGAGGGTTGTGGCAGCAAA
631 TTAGGCATACGGAG-TTCATTCCCAGTCTAAGA-TCAGACCGGACCA-AGGGTTGTGGCAGC-AG
* * * * ** * * *
15144832 GATC-GCAAGTAGGCAGA-AGGGA-CCGATCGATCCCTGGCTTGTGCAT-CCTGCCTTATCGGCC
692 GATCGGC-AGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCT-GGTC
* * *
15144893 GAACTGAGCGTCCTG--CGCTCGTTTAGTGGGTTGACATAAGGCATCACGGAGTTCA-T-CC-G-
755 G-ACTGAGCG-CCCGCACGCTCGTTTCGTGGGTTGAC-TTAGGCAT-ACGGAGTTCATTCCCAGT
* * * *
15144952 CTATAGCACACGGAGATCCTT-CCAGTCTAGGATCGG-AGGAACG-GTGGTTTACGACAGCACAT
816 CTA-AGCATACGGAGTTCATTCCCAGTCTAAGATCGGAAGG-ACGAG-GG-TTACGACAGCACAT
15145014 GCTGGGCTC-
877 GCTGGGCTCG
** *
15145023 GGCTATGTGCTGGTGCCACATTTTT-TTCGGCTGGGGGC-CCATCGTCGGAGCTTTGCCGGAGAA
1 GGC-ATGTGCTGGTGCCGTATTTTTCTTC-G-TCGGGGCACCATCG-C-GAGC--T--CGGAGAA
* * *
15145086 ACTGACTGACGGCATTGGGG-TCTGACGATCGGGGGGG-CC-GGGGGGTGTGC-CACATGATGTG
57 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCCGGGGGGGTGTGCGCACATGATGTG
* *
15145147 CGATGGGTGCTGG---TTGGCCCTTATAGTGGCCCCCTATCCTTCATCAAACCTCGAGAACTCAC
122 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15145209 A-CCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
187 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
15145273 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
252 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
15145315 TACCAAGTTT
Statistics
Matches: 3342, Mismatches: 343, Indels: 326
0.83 0.09 0.08
Matches are distributed among these distances:
866 114 0.03
867 3 0.00
868 2 0.00
870 2 0.00
873 1 0.00
876 74 0.02
877 57 0.02
878 76 0.02
880 25 0.01
881 47 0.01
882 83 0.02
883 62 0.02
884 251 0.08
885 272 0.08
886 28 0.01
887 63 0.02
888 51 0.02
889 279 0.08
890 386 0.12
891 143 0.04
892 241 0.07
893 384 0.11
894 14 0.00
895 1 0.00
896 70 0.02
897 5 0.00
898 4 0.00
899 1 0.00
900 123 0.04
901 44 0.01
902 11 0.00
903 59 0.02
904 93 0.03
905 71 0.02
906 65 0.02
907 22 0.01
908 115 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (886 bp):
GGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCGAGCTCGGAGAACCTGACCGA
CGGCATTGGGGTTCCGACGATCGGGGGGGCCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAATAAAAAATCTCGA
ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGCGTAGTGCCCGCCTGCCCGCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
CCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCGGCAGCACGCAGAGGGGGAC
CCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGTCGACTGAGCGCCCGCACGCTCGTTTCG
TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
GATCGGAAGGACGAGGGTTACGACAGCACATGCTGGGCTCG
Found at i:15146995 original size:26 final size:26
Alignment explanation
Indices: 15146966--15147015 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15146956 GACATAGGCA
* *
15146966 TACGGATTTCATTCCCAGTCTAAGGG
1 TACGGAGTTCATTCCCAATCTAAGGG
15146992 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
15147016 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGGG
Found at i:15148349 original size:26 final size:26
Alignment explanation
Indices: 15148320--15148369 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15148310 GACATAGGCA
* *
15148320 TACGGATTTCATTCCCAGTCTAAGGG
1 TACGGAGTTCATTCCCAATCTAAGGG
15148346 TACGGAGTTCATTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
15148370 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.26, C:0.24, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGGG
Found at i:15149263 original size:26 final size:26
Alignment explanation
Indices: 15149227--15149279 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15149217 GTTGACTTAG
15149227 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15149253 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15149279 G
1 G
15149280 ACCGGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15151895 original size:25 final size:26
Alignment explanation
Indices: 15151844--15151895 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15151834 GTTGACTTAG
*
15151844 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15151870 GCATACGGAGTTCATT-CCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15151895 G
1 G
15151896 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 10 0.40
26 15 0.60
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15152764 original size:26 final size:26
Alignment explanation
Indices: 15152728--15152780 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15152718 GTTGACTTAG
*
15152728 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15152754 GCATATGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15152780 G
1 G
15152781 ATCAAACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15153651 original size:26 final size:26
Alignment explanation
Indices: 15153615--15153664 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15153605 GTTGACTTAG
15153615 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15153641 GCATACGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
15153665 TAGATCAGAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.28, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15154557 original size:26 final size:26
Alignment explanation
Indices: 15154518--15154570 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15154508 GTTGACTTAG
*
15154518 GCATACAGAATTCATTCCTAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
15154544 GCATA-AGAAGTTCATTCCCAGTCTAA
1 GCATACAGAA-TTCATTCCCAGTCTAA
15154570 G
1 G
15154571 ATCGAACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 4 0.16
26 21 0.84
ACGTcount: A:0.34, C:0.23, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:15154859 original size:902 final size:899
Alignment explanation
Indices: 15150989--15160443 Score: 7779
Period size: 902 Copynumber: 10.5 Consensus size: 899
15150979 GTTGACTTAG
* * * * * **
15150989 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGACCAAGGGTTGCCGCAGCACATGCTGTT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15151054 CTCGAGCATGTGCTGGTGCCACATTTTTCTTCG-TCGAGGCACCATCGCCGGAGCATCGTCGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCACCAGAGCATCGTCGAAG
*
15151118 AACCTGACCAGC-GACATTGGGGTTCC-AGCGATCGGGGGGCCGAGGGGGGTGTGCGCACATGAT
130 AACCTGACCGGCAG-CATTGGGGTTCCGA-CGATCGGGGGGCCG-GGGGGGTGTGCGCACATGAT
* **
15151181 TTGCGATGGGTGCTGGTACTTGGCCCTTATATTCACCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15151246 CACACCCCCTTAAAGCGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGC
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * *
15151311 AATGGGGAAACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAACTAAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * * *
15151376 TTGTGCAGGCCAACATAAATACAAGGATAAAGTCTACCATGTTTGGGGCCAAAAATACTTCCAAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * *
15151441 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
452 AAAA-TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
15151506 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC-TAAAAAAT
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAAT
***
15151570 GGCATTGGCATGTAGAAATATGAAGATGTG-CTAAACCCACCTACCA-CCTATCGATCCACGGCT
580 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* *
15151633 TG-GCATCCCGTCTCTCTGGCCGTCGTAGTGCCCGCCCG--CCGCCCGCTCGTTTCATC-GTTGG
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGG
* * * * * *
15151694 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CCGCATGAGGGTTTGCGGTAGTAGGA
710 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAACGAGGG-TTGTGGTAGCAGGA
* * * *
15151758 -T--CA-CACGCAGA-GGGGA--C--CCGAT--CCGACTTGCGCAT-CCGCCCCTCTGGC-CGTT
774 TTGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCT
* * * *
15151810 GAGCACCCGCACGCTCG-TTCATGGGTTGACTTAGGCATAGGGAGTTCATTCCCAGTCTAA
839 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
* *
15151870 GCATACGGAGTTCATT-CCAGTCTAAGATC-AGACCGGACCGAGGGTTGTGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * *
15151933 GCTCGGGCATGTGCTGGTGGCGCATTTTTCTTCG-TCGAGGCACCATCGCCGGACCATCGTCGAA
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCACCAGAGCATCGTCGAA
* * * ** * *
15151997 GAACCAGACCGAC-GACATTGGGGCTCCGGTGATCGGGGGGCCCGAGGGG-GTGCGCACATGATG
129 GAACCTGACCGGCAG-CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * *
15152060 TACGATGGGTGCTGGTACTTGGCCTTTATATTGG-CCCCTTTCCCTAATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15152124 ACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTCGGTGCCATTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
**
15152188 ATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTGCAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15152251 T-TAGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAACTCCATACGAA
388 TGT-GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAA
* * * *
15152315 AAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTC-AAAATCGTGAAAAATAGAAAATGAGTCGT
451 AAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
15152379 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCGTTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
15152444 GCATTGGCTCACAGAAATATGAAGATGTGCCTAAACCCACCTGCAACCATATCGATCCACGGCTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * ** *
15152509 GCGCATCCCATTTCTCTGGCCG--GT-GT---AG--TG-CCCGCCCGCTTATTTCATCGGTTGGC
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *** * * * * *
15152565 TTAGGCATACGAAGTTCATTCCCAGTCAAAAATCAAACCTGACCGAAGGTTGTGGTAGCAGGATC
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAACGAGGGTTGTGGTAGCAGGATT
** * * * * * * * *
15152630 GGTAGCACGTAGAGGGGGACCCGATCGATCCTCGGCTTGTGCATCCCGCCCGTCTAG-TCGGTTG
776 GACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCT-GGCTG
* * *
15152694 AGCGCCCGCACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
* * * * * * *
15152754 GCATATGGAGTTCATTCCCCGTCTAAGATCAAACAGGATCGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15152819 CTCAAGCATGTGCTGGTGCCGCATTTTTCTTC-ATCGGGGCACCAT---C---GC-T-G--G-AG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCACCAGAGCATCGTCGAAG
* * * *
15152872 AACCTGACCGACGGCATTGGGATTCCGGA-GATCGGGGGGGCC-GGGGGGTGTGCGCAAATGATG
130 AACCTGACCGGCAGCATTGGGGTTCC-GACGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATG
* * * ** * *
15152935 TGTGATGGGTTCTGGTACTTGGCCTTTATATTGAACCACTATCCCTCATCAAACCTCGAGAAATC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15153000 ACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * *
15153065 AT-GGGACACCTTTTTCAAATGGTCAAAAAATCTTGTACGCTTTGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** ** * *
15153129 TGCACACCCCAACAAAAATACAAGGATCCACGTCTACCAA-CTTGGGGCCAAAACTCCTTTCGAA
388 TGTGCATGCCAACAAAAATACAAGGAT-CACGTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAA
* * * * *
15153193 AAAATTTTAAAAAAATCCCGAACTGCAGAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
451 AAAAATTT-AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
* * *
15153258 CCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCAAAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * *
15153323 GGCATTCGCACACAGAAATATGAAGATGTGCCTAAACACACCTACCA-CCTATCGATCCACAGCT
580 GGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
15153387 TGCGCATCCCGTCTCTCTGGTCG-CGTAGTGCCCGCTCG--CCACCCGCCTCGTTTCGTCAGTTG
645 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCCCG-CTCGTTTCGTCGGTTG
* * * * * *
15153449 GCTTAAGACGTACGGAGTTCATT-CCAGTCTAAGATT-CAACTGAACTGAGGGTTGTGACT-GCA
709 GCTT-AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAAC-GAGGGTTGTG-GTAGCA
* * * *
15153511 GGATTGACAGGCATGCA-AGAGGGACCCTAGCCGATCCTCGGCTTGCGCATCCCACCCCTCTGGC
771 GGATTGACA-GCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGC
* * *
15153575 CGGCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
834 TGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTA
15153640 A
899 A
* * * **
15153641 GCATACGGAGTTCATTCCCAGTCTTAGATC-AGACCGGATCGAGGGTTGCGGCAGCACAAGAAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* ** * * * * **
15153705 GCTC-AGGCATGTGTTGGTGTTGCATTTTTCTTCAAC-GGGGCACCATCGCTAGAGTATCACCCG
65 GCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTC-GCTGGGGCACCATCACCAGAGCATC-GTCG
* * * *
15153768 -AGAACTTGACCGGCAGCATTGGGGTTCCGACGATAGGGGTGGTCGAGGGGGGTTGTGCGTACAT
127 AAGAACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGG-GGCCG-GGGGGG-TGTGCGCACAT
* * *
15153832 GATGTGCGATGGGTGCTGTTACATGGCCCTTATATTGGCCCCCTATCCCTCATCGAACCTCGAGA
189 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* * * *
15153897 AGTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCGATTAAAGTATC
254 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
** *
15153962 AAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATT
319 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT
* * ** *
15154027 TTTTTGTGCAAGCCAACAAAAATACAAGGATCACGTCTACCAACTTTATGGCCAAAAATCCTTCC
384 TTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC
* ** * * * * *
15154092 AAAAAAAATTAAAAAATCTAAAATCGTAAAAAGTTTCAAAAATAAAGAAAAACAGAAAATGAGTC
449 AAAAAAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
* * *
15154157 GTCTTGCCATGAAACTTTACGTCAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAA
514 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** *
15154222 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAG-
579 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * *
15154286 TTGTG-ATCCCGTCTCTCTGGCCGACGTAGTGCCCACCCGCCCATCCGCCCGCTCGTTTCATCGG
644 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC--CCGCCCGCTCGTTTCGTCGG
* * * *
15154350 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAACAAGGGTTATGATAGTA
706 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAACGAGGGTTGTGGTAGCA
* * * * * * **
15154415 GGATTGACAGGACGTAGAGGGGGACCTGATCAATCCCCGACTTGCGCATCCTGCCCCTCTGGCTG
771 GGATTGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTG
* * *
15154480 GCTGAGCGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAATTCATTCCTAGTCTAA
836 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
* * * * *
15154544 GCATAAGAAGTTCATTCCCAGTCTAAGATCGAACTGGACCGACGATTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
15154609 CTTGGGCATGTGCTGCTGCTGTATTTTTCTTCGCTGGGGCACCATCACCGGAGCATCGTTGAAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCACCAGAGCATCGTCGAAGA
* * * * *
15154674 AGCTAACCGACAGCATTGGGGCTCCGACGATCGGGGGGATCGGGGGGTGTGTGCGCACATGATGT
131 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGG-CCGGGGGG-GTGTGCGCACATGATGT
** *
15154739 GCGATACGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15154804 CACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15154869 TAGGGG-TACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
324 T-GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
** * **
15154933 TGTGCATGAAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCGAAA
388 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAA
* * * * ** * **
15154998 AAATTTTGAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCGTTTAAAATAGAAAACGAGTCGTC
452 AAAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
15155063 TTGCCATGAAACTTCACGTGAAGGCTT-AGGGCACCATTGTATGAATTTACAAGCCATAAAAATG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGG-ACCATTGTATGAATTTACAAGCCATAAAAATG
** * *
15155127 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGATCCACGGCTT
581 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
** * * * * * *
15155192 GCGCATCTTGTCTCTCTGGTCGACGTAGTGCCTGCCTG-CCCGCCCACTCATTTTGTCGGTTGGC
646 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * *
15155256 TTAGGCATACGGAGTTCATTCCCAATCTAAGATTGGA-CCGGACTGAGGGTTGCGGTAACAGAAT
711 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAAC-GAGGGTTGTGGTAGCAGGAT
* * * * * * *
15155320 CGATAGCACGCAGAGGGGCACTCGACCGATCCCCGGCTCGCTCATCCCGCCCCTCTGGCTGGCTG
775 TGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTG
* * * * *
15155385 AGCGCCTGCACGCTTGTTTCATGGGTTGACTTAGGCATAC-GAAGTTCATTTCCAGTTTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAA-TTCATTCCCAGTCTAA
** * ** *** * ** *
15155445 GCATACGGAGTTCATTCCCAGGTGAAATAATTTTAA-AAAATCC-CGTCTCT-CTGGC--CA-AC
1 GCATACGGAGTTCATTCCCA-GTCTAA-GA-TCGAACCGGA-CCGAGGGT-TGC-GGCAGCACAT
* * * ** *** * * * *
15155504 G-TAGTGCCCG-TC-TGCCCACCTGCTCG----TTTCGTCGGT-TGGCTTAGGCAT-A-CAGAGT
60 GCT-GGGCTCGAGCATGTGCTGGTGC-CGCATTTTTCTTCGCTGGGGC--A-CCATCACCAGAG-
* * * * ** * * ** *
15155559 TCATTCCCAGTCTAAG-ATCAGATCGGATCGAGGGTTGCGG--CAGCAC-AT-GTTGGGCTTGGG
119 -CA-T--C-GTCGAAGAACCTGACCGG--C-AGCATTGGGGTTCCG-ACGATCGGGGGGC-CGGG
* * * ** * * ** * ** * *
15155619 AATGTGCTGGTGC-CCCATTTTTCTTC-ATCAGGGCACCATCGT-C--GGAGC--ATCATCGGAG
174 ---GGGGT-GTGCGCACA-TGATGTGCGAT--GGG-TGC-TGGTACTTGGCCCTTAT-ATTGG-C
** * ****** ** *** * * **
15155677 AACCTGA-CCGGTGGCATTGGGGTTCCGACG-A-TCGGGAGGGCC---AGGGGGGTGTGTGCACA
228 CCCCT-ATCC-CT--CATCAAACCT-CGA-GAACTC-ACACCCCCTTAAAGAGCAT-T-TG----
* * * ** * * * *
15155736 AGA-TGTGCGATGG-GTGCTG---GTA--C-TTGGTA-TTTCT---AT-TGGCCTCTTATCCCTC
280 AGATTTTAC-A-GGTTTGCTGCCAGTAGCCATT-AAAGTGTCTGAAATGGGGACACTT-T---T-
* ** * ** ** * * * ** *
15155788 ATCAAACCTCAAGAACTCAAACCCCCTTAAAGAGCATTTGAGATTTTA-C--AGGTTTTTTG-CC
337 TTCAAA--T---GGTCACAAA--ATCTTGTACA-C-TTCGAGTTTTTAGCTGAATTTTTTTGTGC
* * * * ** * **
15155849 A-G-TAGC--AATTA-AA-G-T---GTCTGA--AA---TGGGG---ACACTTTTTTC-AAATGA-
393 ATGCCAACAAAAATACAAGGATCACGTCT-ACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAAT
* * * * * ** *** *** * *
15155894 TCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTGTGCGTGCCAACAAAATACAAGG
457 TTAAAAAATCTCGAAC-CGTAAAAAGTTT--C--AA----AAAT-CATG---A-AAAATAGAA--
** * *** *** *** *
15155959 ATCACGTCTACCCAGT-TTGGGGCCA--AAACTTCTTCCAAAAAAATTTAAAAAAATC-TTGAAC
506 A--ACG---AGTC-GTCTT---GCCATGAAACTTC--ACGTGAAGGCTT-AAGGGACCATT----
** * ** * * * *
15156020 CGTAAAAAGTTTCAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC-CAGGAAACTTCACGT
555 -GTATGAA-TTT--ACAAGCCAT-AAAAAT-G---GC-A-TTGGC--ACACA-GAAA--T-A--T
** *** ** * * *** * *
15156084 GAAGGCTTAATG-GACCATTGTATGAATTTACAAGCC-AT--AAAAATGGCATTG-GCA-CACAG
601 GAA-G----ATGTG-CC--TAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATC-CCG
*** * ** * ** * * **
15156143 -AAATATGAAGATGTACCTA-AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
656 TCTCTCTG--GCCG-ACGTAGTGCCC-GC--CCGCCC---CG--CC-C-GC-T-CG--TTTCGTC
** ** * * * ** *** * * ** ** * *
15156206 TCTCTGGCCGACGTAGTGATCGCCAGCCCGCCCGCCCG-CT-CG-TTTCATCAGTTGGCTTAGGC
704 GGT-TGGCTTAGGCA-T-A-CG-GAGTTCATTC-CCAGTCTAAGATTGGATCAG--AAC-GAGGG
* * *** * * ** ** ** ** * *
15156268 ATATGGT-G-TTCATT-CCCGGTCTAAGA-TCGGACTAGACCGGGGGTCACAGCAGCAAGATGGG
760 TTGTGGTAGCAGGATTGACAGCACGCAGAGGGGGACCCGACC---GATC-C--C--C-----GGC
* * * ** * * *
15156329 TAGCACACAGAGGGTGACCCGGCCGATCGTCGGCTTGCGCATCCCACCCTTCTGGCCTGCTGAGC
812 TTG--CGC--A---T--CCC-ACCCCTC-T-GGC-TG-GC-T--GA----GC--GCCCGC--A-C
* ** * * * * * *
15156394 GCCCG-CACGCTCGTTTCGTAGGTT-GACTTA-GGCATACGAAGTTCATTCCCATTCTAA
851 GCTCGTTTCG-TGGGTT-G-A-CTTAGGCATACGG-A-A-----TTCATTCCCAGTCTAA
* * * *
15156451 GCATACGGAGTTCATTCCCAGTCTAAGATCAAACCGGATCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
15156516 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC-CAGGCACCATCACCAGAGCATCGTCGAAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCACCAGAGCATCGTCGAAGA
* * * * *
15156580 ACCTGACTGGC-GACTTTGGGGTTTCGATGATCGGGGGGCC-GGGGGGTGTGCGCCCATGATGTG
131 ACCTGACCGGCAG-CATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
* *
15156643 CGATGGGTGCTGGTA-------C-----TTGGCCCCATATCCCTCATCAAACCTCGAGAACTCAG
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15156696 GCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15156761 GTGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTA
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* ** *
15156826 TGCGTGCCAACAAAAATACAAGGATCACGTCTATTAAGTTTGGGGCCAAAACTCCTTTCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * * * *
15156891 TTTTACAAAATTTTGAACC-TCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAA-GAAGTCATCT
455 ATTTAAAAAATCTCGAACCGT-AAAAAGTTTCAAAAATCATGAAAAATAGAAAACG-AGTCGTCT
**
15156954 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGTGATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
15157019 ATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15157084 GCATCCCGTCTCTCTGGTCGGCATAGT--------G-CCCGCCCGCTCGTTTCGTCGGTTGGCTT
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * * * *
15157140 AGGCATACGGAGTTCATTCCCAGTCTAAGATTAGATCGGATCGAGGGTTGCGGCAGCAGGATTGA
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAACGAGGGTTGTGGTAGCAGGATTGA
* * * * * *
15157205 TAGCACGCAGAAGGTGA-CCGGCCGATCCCCGG-TTGGCGCATCCCACCCCTCTGGCCGACTGAG
778 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTT-GCGCATCCCACCCCTCTGGCTGGCTGAG
* *
15157268 CGCCCGCACGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
** * * * **
15157326 GCATGTGGAGTTCATTTCCAGTATAAGATCGGATTGGACCGAGGGTTGCGGCAGCACATGCT-GG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
15157390 CTCGAGCATGTGCTGGTGCAGCATTTTTCTTCACCGGGGCACCAT-AGTCGGAGCATCGCCGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCA-CCAGAGCATCGTCGAAG
* * *
15157454 AACCTGACCGGCGGCTTTGGGGTTCCGACGATCGGGGGG-C-GGGGGGTGTGCGCACATGATTTG
130 AACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
15157517 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * * *
15157582 ACTCCCTTAAAGAGCTTTTAAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAGT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15157647 GGGGACACTTTATTCAAATGGTCATAAAATCTTGTACACTTCGTGTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15157712 TGCATGCCAACAAAAATACAAGGATCACGTCTACCCAGTTTGGGGCCAAAACTTCTACCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
*
15157777 ATTTAAAAAAATCTTGAACCGTAAAAAGTTTCAAAAAATCATGAAAAATAGAAAACGAGTCGTCT
455 ATTT-AAAAAATCTCGAACCGTAAAAAGTTTC-AAAAATCATGAAAAATAGAAAACGAGTCGTCT
* * *
15157842 TGCCAGGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGAATTTACAAGCCATAAAAATCGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
15157907 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
15157972 GCATCCCGTCTCTCTGGCCGACGTAGTGATCGCCCGCCCG-CCCGCCCGCTCGTTTCATCAGTTG
648 GCATCCCGTCTCTCTGGCCGACGTA--G-T-GCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTG
* * * * * * * * *
15158036 GCTTAGGCATACGGTGTTCATTCCCGGTCTAAGATTGGACCAGACCGGGGGTCGCGGCAGCAAGA
709 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAACGAGGGTTGTGGTAGCAGGA
** * * * * ** *
15158101 TTGGTAGCACACAGATGGTGACCCGGCCGATCGTCGGCTTGCGCATCCCACCCTTCTGGCCT-GC
774 TTGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGG-CTGGC
* *
15158165 TGAGCGCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATAC-GAAGTTCATTCCCATTCTAA
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAA-TTCATTCCCAGTCTAA
* * * * *
15158227 GCATACGGAGTTCATTCCTAGTCTAAGATCAAACCGGATCGAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * **
15158292 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCAC-CAGGCACCATCACCAGAGCATCGTCGAAGA
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCACCAGAGCATCGTCGAAGA
* * * * * *
15158356 ACCTGACTGGCAACTTTGGGGTTTCGATGATCGGGGGGCC-GGGGGGTGTGCGCCCATGATGTGC
131 ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
* **
15158420 GATGGGTGCTGGTACTTGGCCC-CATA-T----CCC--T---T-ATCAAACCTCGAGAACTCAGG
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15158473 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15158538 TGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
15158603 GCATGCCAACAAAAACACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
* * ** * ** * * * *
15158668 TTTTAAAAGATCCCGAACCACAAAAATTTTTGAAAATCGTGAAAAATACAAAATGAGTCATCTTG
456 -TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
15158733 CCATTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
15158798 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
15158863 TTCCCATCTTTCTGACCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCTGTTGGCT
650 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
15158928 TATGCATGCGGAGTTCATTCCCAGTCTAAGATTGGATCAGACCGAGGGTTGTAGCAGCAGGA-TC
712 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAACGAGGGTTGTGGTAGCAGGATTG
* * * * *
15158992 AGCAGCACGCAGAGAGGTACCCGACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCGGCTTA
777 A-CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGA
* * *
15159057 GCGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
* * * * *
15159116 GCATATGGAGTTCATTCCTAGTCTAGGATCGGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * * * *
15159181 CTCGAGCATGTGTTGGTGCTGCATTTTTCTTCG-TCGGGGCACCATCGTCGGAGCAACGTTGGAG
66 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCT-GGGGCACCATCACCAGAGCATCGTCGAAG
* ** * * * * * *
15159245 AACCTTATTGGCGGTATTGGGGTTCC-AGCAATCAGGGGGCC-GGGGGGTGTTCGCACATAATGT
130 AACCTGACCGGCAGCATTGGGGTTCCGA-CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* *
15159308 GCGATGAGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15159373 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15159438 TGGGGACACTTTTTTCAAATGATCACAAAATCTTATACACTTCCAGTTTTTAGTTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15159503 GTGCATGCCAACAAAAATACAAGGATCAAGTCTACCATGTTTGAGGCCAAAACTCCTTCTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTC-CAAAA
* * * * * ** *
15159568 AATTTTAGAAAATCTTGAACCGCAGAAAGTTTTGAAAATCATGAAAAATACAAAACGAGTCGTCT
453 AAATTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
* *
15159633 TGCCATGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACATGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
15159698 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCTACCTACCACCCTATCGATCCACATCTTGT
583 ATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* **
15159763 GCATCCTGTCTCTCTGGCCGGTGTAGTGCCCGCCCG-CCCGCCCGCTCGTTTCGTCGGTTGGCTT
648 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTT
** * * * *
15159827 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCA-AACCATGGGTTGTGGCAGCAGGATCG
713 AGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAACGA-GGGTTGTGGTAGCAGGATTG
** * * ** * * * * *
15159891 GTAGCACGCAGAGAGGGATCC-AGCTAATCCCTGGCTTGCGCATTCCACCCCTGTGGCCGGCTAA
777 ACAGCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGA
* * *
15159955 GCGTCCGCACACTCGTTCCAG-GGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
841 GCGCCCGCACGCTCGTTTC-GTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
* * **
15160014 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCTGATCGAGGGTTGTAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * * * * * *
15160078 GCTCGAACAGGTGCTGGGGCTGCATTTTTCTTTGCCT-GGGCACCATCGCCAGAGCACCGTCGGA
65 GCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGGGCACCATCACCAGAGCATCGTCGAA
* * *
15160142 CAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGGCCGGGGGGGTGTGTGCACAT-AT
129 GAACCTGACCGGCAGCATTGGGGTTCCGACGATC--GGGGGGCCGGGGGGGTGTGCGCACATGAT
* *
15160206 GTGCTATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* *
15160271 CACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGA
257 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * * * *
15160336 AACGAGGACACTTTTTTCAAATTGTCACAAAATGTTGTACAATTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * *
15160401 TGGTGCATGCCAGCAAAAATACAAGGATCATGTCTACCAAGTT
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
15160444 CAGGGCTTCA
Statistics
Matches: 6866, Mismatches: 1237, Indels: 923
0.76 0.14 0.10
Matches are distributed among these distances:
868 1 0.00
869 16 0.00
870 51 0.01
871 6 0.00
873 118 0.02
874 214 0.03
875 241 0.04
876 119 0.02
877 126 0.02
878 109 0.02
879 78 0.01
880 264 0.04
881 35 0.01
882 14 0.00
883 27 0.00
884 59 0.01
885 100 0.01
886 274 0.04
887 225 0.03
888 178 0.03
889 437 0.06
890 313 0.05
891 17 0.00
892 11 0.00
893 1 0.00
894 10 0.00
895 4 0.00
896 20 0.00
897 18 0.00
898 350 0.05
899 31 0.00
900 516 0.08
901 597 0.09
902 854 0.12
903 440 0.06
904 99 0.01
905 64 0.01
906 12 0.00
907 18 0.00
908 11 0.00
909 8 0.00
910 4 0.00
911 17 0.00
912 14 0.00
913 14 0.00
914 3 0.00
915 21 0.00
916 3 0.00
917 1 0.00
918 1 0.00
919 12 0.00
920 13 0.00
921 9 0.00
922 15 0.00
923 9 0.00
924 13 0.00
925 7 0.00
927 2 0.00
928 2 0.00
929 3 0.00
930 4 0.00
931 4 0.00
932 3 0.00
933 2 0.00
934 1 0.00
935 1 0.00
936 2 0.00
937 4 0.00
938 1 0.00
940 4 0.00
941 10 0.00
942 12 0.00
943 7 0.00
944 9 0.00
945 1 0.00
946 11 0.00
947 5 0.00
948 10 0.00
949 13 0.00
950 4 0.00
951 2 0.00
952 2 0.00
953 5 0.00
954 1 0.00
955 2 0.00
956 1 0.00
957 5 0.00
958 12 0.00
959 10 0.00
960 12 0.00
961 8 0.00
962 10 0.00
963 13 0.00
965 2 0.00
966 6 0.00
967 7 0.00
969 3 0.00
970 5 0.00
972 4 0.00
974 6 0.00
975 11 0.00
976 11 0.00
977 10 0.00
978 9 0.00
979 10 0.00
980 17 0.00
981 8 0.00
982 8 0.00
983 13 0.00
984 15 0.00
985 20 0.00
986 17 0.00
987 6 0.00
988 3 0.00
989 9 0.00
990 11 0.00
991 2 0.00
992 1 0.00
993 1 0.00
994 7 0.00
995 6 0.00
996 4 0.00
997 12 0.00
998 19 0.00
999 22 0.00
1000 15 0.00
1001 4 0.00
1002 6 0.00
1003 11 0.00
1004 14 0.00
1005 18 0.00
1006 41 0.01
1007 5 0.00
1008 11 0.00
1009 2 0.00
1010 5 0.00
1011 9 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGCTGGGGCACCATCACCAGAGCATCGTCGAAGA
ACCTGACCGGCAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
TTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
CATACGGAGTTCATTCCCAGTCTAAGATTGGATCAGAACGAGGGTTGTGGTAGCAGGATTGACAG
CACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCAGTCTAA
Found at i:15156462 original size:26 final size:26
Alignment explanation
Indices: 15156425--15156477 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15156415 GTTGACTTAG
*
15156425 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15156451 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15156477 G
1 G
15156478 ATCAAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.26, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15157797 original size:26 final size:27
Alignment explanation
Indices: 15157768--15157821 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
15157758 CAAAACTTCT
*
15157768 ACCG-AAAAAATTTAAAAAAATCTTGA
1 ACCGTAAAAAATTTAAAAAAATCATGA
* *
15157794 ACCGTAAAAAGTTTCAAAAAATCATGA
1 ACCGTAAAAAATTTAAAAAAATCATGA
15157821 A
1 A
15157822 AAATAGAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 4 0.17
27 20 0.83
ACGTcount: A:0.56, C:0.13, G:0.09, T:0.22
Consensus pattern (27 bp):
ACCGTAAAAAATTTAAAAAAATCATGA
Found at i:15158238 original size:26 final size:26
Alignment explanation
Indices: 15158201--15158253 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15158191 GTTGACTTAG
*
15158201 GCATACGAAGTTCATTCCCATTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15158227 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15158253 G
1 G
15158254 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.17, T:0.30
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15159126 original size:26 final size:26
Alignment explanation
Indices: 15159090--15159140 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15159080 GTTGACTTAG
15159090 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15159116 GCATATGGAGTTCATTCCTAGTCTA
1 GCATACGGAGTTCATTCCCAGTCTA
15159141 GGATCGGACC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15160027 original size:26 final size:26
Alignment explanation
Indices: 15159988--15160040 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15159978 GTTGACTTAG
15159988 GCATACGGAATTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
*
15160014 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCCCAGTCTAA
15160040 G
1 G
15160041 ATCAGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCCCAGTCTAA
Found at i:15163405 original size:888 final size:884
Alignment explanation
Indices: 15160462--15163981 Score: 4396
Period size: 888 Copynumber: 4.0 Consensus size: 884
15160452 CACATCAAGT
* * *
15160462 TCGGGCATGTGCTGGTGCCGTATTTTTCTTTATCGGGGCACCATCGTCGGAGAACCTGACTGGCG
1 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGACG
* * * * **
15160527 ACATTGGGGTTCCGGCGATCGGGGGTGCCAGGGGGGTGTGCACACATGATGTGCGATGGGTTATG
66 GCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
15160592 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
131 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
* * *
15160657 AGCATTTAAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTT
196 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
* *
15160722 TTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACA
261 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
* * * * * * *
15160787 AAAATACAAGGATCATGTCTACCAAGTTTGGGGCTAAAAATCCTTCCGAAAAGATGTTAAAAAAT
326 AAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
* * * * *
15160852 CTGGAATCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTT
391 CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
* * * * *
15160917 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGTATTGGCATATAGA
456 CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAA
* * *
15160982 AATATGAAGATATGTCTAAACCCACATACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCT
521 AATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
* *
15161047 CTGGCCGACGTAGTGCCCGCCTGCCCGTCCTCCTGCTCGTTTCGTCAGTTGGCTTAGGCATACGG
586 CTGGCCGACGTAGTGCCCGCCCGCCCG-CCTCCT--TCGTTTCGTCTGTTGGCTTAGGCATACGG
** * * * *
15161112 AGTTCATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTACGGTAGCAGGATCGGTAGCACACAG
648 AGTTCATTCCCAGTCTAAGATCAGACC-GAACGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAG
* * *
15161177 AGGTGGG-CCCGACCGATCCCCGGCTTACGCATCTC-GCCCCTCTGGTCGGCTGAACGCCCGCAC
712 AGG-GGGACCCGATCGATCCCCGGCTTACGCATCCCAG-CCCTCTGGTCGGCTGAGCGCCCGCAC
* ** * *
15161240 GCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAACCATACGGAGTTCATT
775 GCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * *
15161305 CCCAGTGTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGGC
840 CCCAGTCTAAGATC--ACC-GA-C-AGGGTTACGGCAGCACATGCTGGGC
* * * * * * * * *
15161355 TCGGGCATGTGCTGGTGTCGCATTTTTCATCGTCGGGGCACCATCGTCGGAGAACTTTAGCTACA
1 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGACG
* * * * *
15161420 GAATTGGGGTTCTGGCGATC--GAGGGCCCGGGGAGGTGTGCGCACATGATGTGCGATGGGTGCT
66 GCATTGGGGTTCCGACGATCGGGGGGGCCAGGGG-GGTGTGCGCACATGATGTGCGATGGGTGCT
15161483 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
130 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAA
*
15161548 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTT
195 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * *
15161613 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTAAATGTTTTTGTGCATGCCATC
260 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * * *
15161678 ATAAATACAAGGATCATGTCTACCAAGATT-GAGGCCAAAACCCCTTCCAAAAAAATTTTAAAAA
325 AAAAATACAAGGATCACGTCTACCAAGTTTCG-GGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * * *
15161742 ATCCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAAC
389 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* * * **
15161807 TTCACGTGAAGGCTTAAGAGATCATTGTATGAATTTACCAGCCATAAAAATGGCATTGGCATGCA
454 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* *
15161872 GAAAATATGGAA-ATGTGCCTAAACCCACCTACCACCCTATCGATCCAGGGCTTGCGCATCCCGT
519 -AAAATAT-GAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * * * *
15161936 CTCTCTAGCCGGCGTAGTACCCGCCTGCCCCCCCGCCCGCCCGCTCGTTTCGT-TGGTTGGCTTA
582 CTCTCTGGCCGACGTAGT----GCCCGCCCGCCCG-CC-TCC-TTCGTTTCGTCT-GTTGGCTTA
* * * *
15162000 GGCATACGGAGTTCATTCCCAGTCTAAGATCATACTGGAAAGAGGGTTGCGGCAGCAGGATCGGC
639 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC-CGAACGAGGGTTGCGGCAGCAGGATCGGT
* * * * * *
15162065 AGCACGCAGAGGGGGACCCGATCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGGG
703 AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCAGCCCTCTGGTCGGCTGAGCG
* * * * * *
15162130 ACCGTACTCTCGTTTCATGGGTTCACTTAGGCTTAAAGAGTTCATTCCCAGTCTAAG-AT-C--A
768 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACGGA
*
15162191 G---A----C---C--AG---ACCG--AGGGTTACGACAGCACATGCTGGGC
833 GTTCATTCCCAGTCTAAGATCACCGACAGGGTTACGGCAGCACATGCTGGGC
* *
15162226 TCGGGCATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGTCGAAGCATCGCCGGAGAA
1 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCA---TC---G--T---CGGAGAA
* **
15162291 CCTGACCGACGGCATTGGGGTTCCGATGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTAT
55 CCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGC
* **
15162355 GATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
120 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
* *
15162420 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAAGTGTTTGAAATG
185 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15162485 GGGACACTTTCTTCAAATGGTGACAAAATCTTGTACAC-TCTGAGTTTTTAGCTGAATTTGTTTG
250 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC-GAGTTTTTAGCTGAATTTTTTTG
* * *
15162549 TGCATGCCAACAAAAATATAAGGATCACGTCTTCCAAGTTTCGGGCCAAAACTCCTTCCGAAAAA
314 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCAAAAAA
* ** *
15162614 ATTTTAAAAAATCTCGAACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTTATCTT
379 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTT
* * *
15162679 GCCATGAAACTTCACGTGAAGGCTTAGGGGGCCATTGTATGAATTTACAAGCCATCAAAATGGCA
444 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15162744 TTGGCACACAAAAAAATGAAGATATGCCTAAATCCACCTACCACCCTATCGATCCACGGCTTGCG
509 TTGGCACACAAAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* *
15162809 CATCCCATCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCC-CATTCGTTTCGTCATG-TGGCTT
574 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCTCCTTCGTTTCGTC-TGTTGGCTT
* * * * * *
15162872 AGGCTTACGGAGTTTATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGTGACAGTAGGATCAG
638 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAAC-GAGGGTTGCGGCAGCAGGATCGG
* *
15162937 TAGCACGTAGAGGGGGACCCGATCGATCCCCGACTTACGCATCCCAGCCCTCTGGAT-GGCTGAG
702 TAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTACGCATCCCAGCCCTCTGG-TCGGCTGAG
* *
15163001 CGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACG
766 CGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACG
* *
15163066 GAGTTCATTCCCAGTCTAAGATCAAACCGGACTAAGGCTTTCGGCAGCACATGCTGGGC
831 GAGTTCATTCCCAGTCTAAGATC--ACC-GAC--AGGGTTACGGCAGCACATGCTGGGC
* *
15163125 TCGGGCATGTGCTGGTGCCGTAGTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGGCG
1 TCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGACG
* * *
15163190 GCATTGGGGTTCCGACGATCGGGGGGGCCAGGTGGGAGTACGCACATGATGTGCGATGGGTGCTG
66 GCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
* ** * *
15163255 GTACTAGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTTGAGAACTGACACCCCTTTAAAG
131 GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
* * *
15163319 AGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAATGTGTCTGAAATGGGGTCACTTCT
196 AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT-T
* *
15163384 TTT-AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACCAAA
260 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* *
15163448 AAAAATACAAGGATCACATCTACCAAG-TTCAGGGCCAAAACTCCTTTCAAAAAAATTTTAAAAA
325 AAAAATACAAGGATCACGTCTACCAAGTTTC-GGGCCAAAACTCCTTCCAAAAAAATTTTAAAAA
* * *
15163512 ATCTCGAACCTTAAAAAGTTTCAAAAATCGAGAAAAATAGAAAACGAGTCATCTTGACATGAAAC
389 ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAAC
* ** *
15163577 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGTTATTGGCACATA
454 TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACA
* * *
15163642 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGCCT
519 AAAATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * * ** * *
15163707 CTCAGGCC-AGTGTA-TGCCCGCCAGCCCGCTCGTCCGACGTTTCGTCGGTTGGC-AAGGCATAC
584 CTCTGGCCGA-CGTAGTGCCCGCCCGCCCGC-C-TCCTTCGTTTCGTCTGTTGGCTTAGGCATAC
* * * *
15163769 GGAGTTCATTCCCATCGTCTAAGATCAGATC-AGACAAGGGTTGTGGCAGCAAGATCGGTAGCAC
646 GGAGTTCATTCCCA--GTCTAAGATCAGACCGA-ACGAGGGTTGCGGCAGCAGGATCGGTAGCAC
* * * * * *
15163833 GCTGACCGCGGGACCCCGACTCGAT-CCTGGCTTGCGCAATTCCA-CCCTCTGGTCGACCTGAGC
708 GCAGA--GGGGGA-CCCGA-TCGATCCCCGGCTTACGC-ATCCCAGCCCTCTGGTCG-GCTGAGC
* * *
15163896 GCCTGCACGCTCCTTTTCGTGGGTTGACTTAGGC-TATACGGAGTTCATTCCCAGTCTAAGC-TA
767 GCCCGCACGCT-CGTTTCATGGGTTGACTTAGGCATATA--GAGTTCATTCCCAGTCTAAGCATA
* *
15163959 CGGA-TTC-TTTCCAATCTAAGATC
829 CGGAGTTCATTCCCAGTCTAAGATC
15163982 GGGAATGGAT
Statistics
Matches: 2281, Mismatches: 264, Indels: 164
0.84 0.10 0.06
Matches are distributed among these distances:
871 63 0.03
872 3 0.00
873 172 0.08
874 6 0.00
875 3 0.00
876 5 0.00
877 14 0.01
879 1 0.00
880 4 0.00
881 74 0.03
882 406 0.18
883 5 0.00
884 7 0.00
886 1 0.00
887 19 0.01
888 441 0.19
889 76 0.03
890 43 0.02
891 27 0.01
892 389 0.17
893 179 0.08
894 39 0.02
895 30 0.01
896 28 0.01
897 182 0.08
898 2 0.00
899 62 0.03
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (884 bp):
TCGGGCATGTGCTGGTGCCGTATTTTTCTTCATCGGGGCACCATCGTCGGAGAACCTGACCGACG
GCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTG
GTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAG
AGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA
AAAATACAAGGATCACGTCTACCAAGTTTCGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAAT
CTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTT
CACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAAA
AATATGAAGATATGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCT
CTGGCCGACGTAGTGCCCGCCCGCCCGCCTCCTTCGTTTCGTCTGTTGGCTTAGGCATACGGAGT
TCATTCCCAGTCTAAGATCAGACCGAACGAGGGTTGCGGCAGCAGGATCGGTAGCACGCAGAGGG
GGACCCGATCGATCCCCGGCTTACGCATCCCAGCCCTCTGGTCGGCTGAGCGCCCGCACGCTCGT
TTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGT
CTAAGATCACCGACAGGGTTACGGCAGCACATGCTGGGC
Found at i:15163978 original size:23 final size:25
Alignment explanation
Indices: 15163932--15163978 Score: 62
Period size: 23 Copynumber: 2.0 Consensus size: 25
15163922 ACTTAGGCTA
*
15163932 TACGGAGTTCATTCCCAGTCTAAGC
1 TACGGAGTTCATTCCCAATCTAAGC
*
15163957 TACGGA-TTC-TTTCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
15163979 ATCGGGAATG
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 11 0.55
24 3 0.15
25 6 0.30
ACGTcount: A:0.26, C:0.26, G:0.17, T:0.32
Consensus pattern (25 bp):
TACGGAGTTCATTCCCAATCTAAGC
Found at i:15164734 original size:26 final size:26
Alignment explanation
Indices: 15164705--15164757 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15164695 GTTGACATAG
*
15164705 GCATAC-GAAGTTTATTCCCAGTCTAA
1 GCATACAG-AGTTCATTCCCAGTCTAA
15164731 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15164757 G
1 G
15164758 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15166776 original size:26 final size:26
Alignment explanation
Indices: 15166746--15166798 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15166736 GTTGACTTAG
*
15166746 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15166772 GCATATGGAGTTCATTCCCCGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15166798 G
1 G
15166799 ATCAAACAGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15167669 original size:26 final size:26
Alignment explanation
Indices: 15167633--15167682 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15167623 GTTGACTTAG
15167633 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15167659 GCATATGGAGTTCATTCCCAGTCT
1 GCATACGGAGTTCATTCCCAGTCT
15167683 TAGATCAGAC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15168392 original size:902 final size:895
Alignment explanation
Indices: 15166484--15175639 Score: 10162
Period size: 902 Copynumber: 10.3 Consensus size: 895
15166474 AGCCATAAAA
* *
15166484 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCAACGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * *
15166549 AGTG---CCCG-CCCGTCCGCTCGTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTG
66 AGTGCCACCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * ** * * * * *
15166610 TAAGATCAGACCGGACCGAAGGTTACG-GTAGCAGGATCGGTAGAACGTAAAGGGAGACTCGATC
131 TAAGATCA-ACTGAACCGAGGGTTGCGACT-GCAGGATTGACAGCACGCAAAGGGGGACCCGACC
* * * * * * * *
15166674 GATCCTCGGCTTGTGCATCCCGCCCCTCTAGTCGGTTGAGTGCCCGCACGCTTGTTTCATGGGTT
194 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
* * * *
15166739 GACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATATGGAGTTCATTCCCCGTCTAAGATCAA
259 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * *
15166804 ACAGGATCGAGGGTTACGGCAGCACATGCTAGGCTCAAGCATGTGCTGGTGCCGCATTTTTCTTC
324 ACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
* *
15166869 ATCGGGGCACCATCGCT--G-------GAGAACCTGACCGACGGCATTAGGATTCCGGA-GATCG
389 ATCGGGGCACCATCGCTGAGTATCCCCGAGAACCTGACCGACGGCATTGGGGTTCC-GACGATC-
* * * * **
15166924 GGGGGGCC-GGGGGGTGTGCGCAAATGATGTGTGATGGGTTCTGGTACTTGGCCTTTATATTGAA
452 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
15166988 CCACTATCCCTCATCAAACCTCGAGAAATCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGT
517 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
15167053 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACCTTTTTCAAATGGTCACAAAATCTT
582 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* ** ** *
15167117 GTACGCTTTGAGTTTTTAGCTGAA-TTTTTTGCACACCCCAACAAAAATACAAGGATCATGTCTA
647 GTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * * *
15167181 CCAACTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACTGCAGAAAGTTTCA
712 CCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
*
15167246 AAAATCATGAAAAATAGAAAACGAGTCGCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
776 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * **
15167311 ATTATATGAATTTACAAGCCAAAAAAATGGCATTCGCACATAGAAATATGAAGAT
841 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * * * *
15167366 GTGCCTAAACACACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTTTCTCTGGTCGGCGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * *
15167431 AGTGCCCACCCGCCCCGCCCGCTCGTTTCGTCAGTTGGCTTAGACGTACGGAGTTCATTCCCAGT
66 AGTG-CCACCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGT
* * *
15167496 CTAAGATTCAACTGAACCGAGGGTTGCAACTGCAGGATTTACAGCATGCAAAGGGGGACCC-AGC
130 CTAAGA-TCAACTGAACCGAGGGTTGCGACTGCAGGATTGACAGCACGCAAAGGGGGACCCGA-C
* * *
15167560 CGATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCGTGGGT
193 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
15167625 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTTAGATCA
258 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA
* ** * **
15167690 GACCGGATCGAGGGTTGCGGCAGCACAAGAAGGGCTCAGGCATGTGTTGGTGTTGCATTTTTCTT
323 GACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTT
* *
15167755 CACCGGGGCACCATCGCTAGAGTATCACCCGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
388 CATCGGGGCACCATCGCT-GAGTATC-CCCGAGAACCTGACCGACGGCATTGGGGTTCCGACGAT
* * * *
15167820 AGGGGTGGTCCGAGGGGGGTTGTGCACACATGATGTGCGATGGGTGCTGTTACATGGCCCTTATA
451 CGGGG-GG-CCG-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
15167885 TTGGCCCCCTATCCCTCATCGAACCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTA
512 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
15167950 CAGGTTTGCTGCCAGTAGCGATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAA
577 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
*
15168015 ATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCAC
642 ATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* ** * ** *** *
15168080 GTCTACCAACTTTATGGCCAAAAATCCTTCCAAAAAAAATTAAAAAATCTAAAATCGTAAAAAGT
707 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGT
* * * *
15168145 TTCAAAAATCAAGAAAAACAGAAAACGAGTTCGTCTTGCCATG-AACTTTACGTCAAGGCTTAAG
772 TTCAAAAATCATGAAAAATAGAAAACGAG-TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
15168209 GGACTA-TGTATGAATTTACAA-CCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
836 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * *
15168267 GTGCCTAAACCCACCTACTACCCTATCGATCCACAG-TTGTG-ATCCCGTCTCTCTGGCCGACGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
*
15168330 AGTGCCCACCCGCCCATCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
66 AGTG-CCACCCG-CC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * ** * *
15168395 AGTCTAAGATCGGATCAGAA-CAAGGGTTATGA-TAGTAGGATTGACAGGA--CAATAGAGGGGA
127 AGTCTAAGATC--AACTGAACCGAGGGTTGCGACT-GCAGGATTGACAGCACGCAA-AG-GGGGA
* * * * *
15168456 CCTGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTC
187 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * *
15168521 GTGGGTTGACTTAGGCATACAGAATTCATT-CCAGTCTAAGCATACAGAGTTCATTCCTAGTCTA
252 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * *
15168585 AGACCGGATCGGATCGAGGGTTGTGGCAGCACATGCTGGGCTCGGGCATGTGCGGGTGCCGCATT
317 AGATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATT
* * * *
15168650 TTTCTTC-GC-TGG-AGCAT--C---GT-T---GGAGAACCTGACCGACGGCATTGGGGTTCCGA
382 TTTCTTCATCGGGGCACCATCGCTGAGTATCCCCGAGAACCTGACCGACGGCATTGGGGTTCCGA
** * * * * *
15168703 CGAT--TAGGACC-GGGGGGTGTGTGCAAATGATGTGCGATGGGTACTGGTACTTAGCCCTTATA
447 CGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * * *
15168765 GTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAAAGCATTTGAGATTTTA
512 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * *
15168829 CAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTTCAAATGGTCAAAAA
577 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
15168894 ATCTTGTACACTT-TA-CTTTTAGCTCAA-TTTTTTGTACATGCCAACAAAAATACAAGGATCAC
642 ATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * * ** *
15168956 CTCTAGCAAGTTT-GGGCCAAAACTCCTTTCGAAGAAATTTTAAAAAAT-TTGAAACCGCAAAAA
707 GTCTACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCG-AACCGTAAAAA
* * *
15169019 GTTT-GAAAATCACGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAA
770 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* ** *
15169083 GGCACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGAAATGCAGAAATATGAAGAT
835 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* *
15169144 GTGCCAAAACCCACCTACCACCCTA-CGATCGACGGCTTTGCGCATCCCGTCTCTCTGGCCGACG
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TTGCGCATCCCGTCTCTCTGGCCGACG
* * *
15169208 TAGTGCCCGCCCACCCGCCCGCCCCGCCCACACGTTTCGTCGGTTGGCTTAGGCATGATGGAGTT
65 TAGT----G-CCA----CCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT-ACGGAGTT
* * * ** * * * * ** * * ** * *
15169273 CATTCCTAGTCGAGGATCAGACTGGGCTGAGTG-TACGGCAACAAGA-TCAGCAGCACATAGAGA
120 CATTCCCAGTCTAAGATCA-ACTGAACCGAGGGTTGCGACTGCAGGATTGA-CAGCACGCAAAGG
* * * * ** *
15169336 TGGACCCGACCGATCCCCGACTTACGCATCCCGCCCCTCTGGCCGACTGAGCTACCGTACGCTCG
183 GGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
* * *
15169401 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAATCTAAGCATACAGAGTTCGTT-CCAG
248 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
* * * ** *
15169465 TCTAAGATC-GTACCAGACCGAGGGTTGTGATAGCACATGCTGGGCT-ATGGCAT-TCCTGGTGC
313 TCTAAGATCAG-ACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCA-GGCATGTGCTGGTGC
* ** * * * * *
15169527 CACATTTTTCTTTGTCGGGGCACCATCGCCGGAGTATCGCCGGAGAACTTGACCGGCAGCATTTG
376 CGCATTTTTCTTCATCGGGGCACCATCG-CTGAGTATC-CCCGAGAACCTGACCGACGGCA-TTG
* *
15169592 GGGTTCCGGCGATC-GGGGG-CGGGGGGGTGGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
438 GGGTTCCGACGATCGGGGGGCCGGGGGGGT-GTGCGCACATGATGTGCGATGGGTGCTGGTACTT
* * *
15169655 GGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAA-TCACACCCCCTTAGAGAGCATT
502 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATT
* * *
15169719 TGAGATTTTACAGGTTTCCTACCAGTAGCCATTAAAGTGTCTTGAAATGGGGAAAC-TTTTTCAA
567 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC-TGAAATGGGGACACTTTTTTCAA
* * * * *
15169783 ATGGTCCACAAAAT-ATGTACGCTTCAAGTTTTTAACTAAATTTTTTTGTGCATG-CAACAGAAA
631 ATGGT-CACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
15169846 TACAAGGATAAAGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCG
695 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCG
* ** * *
15169911 AACCATAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCATG
759 AACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
15169976 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATA
824 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATA
15170041 TGAAGAT
889 TGAAGAT
*
15170048 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGACGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
*
15170113 AGTGCC-CGCTCG-CCCGCCCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
66 AGTGCCAC-C-CGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAG
* * * * * * * * * *** *
15170176 TCTTACATTAGACCGGATCGAGGGTTGTGACAGTAGGATTGACAGCACGTGGAGGGGGACCAGAC
129 TCTAAGATCA-ACTGAACCGAGGGTTGCGACTGCAGGATTGACAGCACGCAAAGGGGGACCCGAC
* * * * * * * **
15170241 CGATCCTCGGCTTGCGCATCCCGCCCGATC--CCCGGCTTGCGCATCCCGC-C-C-C-TCTGGCC
193 CGATCCCCGGCTTGCGCATCCCGCCC-CTCTGGCCGGC-TGAGC-GCCCGCACGCTCGTTTCGTG
**** ** **** * ***** * * *
15170300 GGTTGAGCGCCCGCACGCTCTTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
255 GGTTGA-CTTAGGCATACGGAGTTCATTCCCAGTC-TAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * * **
15170365 GATCGGACCAGACCAAGGGTTGCCGCAGCACATGCTGTTCTC-GAGCATGTGCTGGTGCCGCATT
318 GATCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAG-GCATGTGCTGGTGCCGCATT
* * * * * *
15170429 TTTCTTCGTCGAGGG-ACCATCGGTCG-GGATCGTCGGAGAACCTGACC-AGCGACATTGGGGTT
382 TTTCTTCATCG-GGGCACCATCGCT-GAGTATC-CCCGAGAACCTGACCGA-CGGCATTGGGGTT
* * * *
15170491 CCAACGATCGGGGGGCCGAGGGGGTGTGCGCACATGATTTGTGATGGGTGCTGGTACTTGGCCCT
443 CCGACGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
** * *
15170556 TATATTCACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGCGCATTTCAGA-
508 TATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGAT
*
15170620 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-ACAATGGGGAAACTTTTTTCAAATGGTC
573 TTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTC
* * * * *
15170684 ACAAAATCATGTACGCTTCAAGTTTTTAACTAAATTTTTTTGTGCATGCCAACAGAAATACAAGG
637 ACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * * * *
15170749 ATAAAGTCTACCAAGTTTGGGGCCAAAACTGCTTCCAAAAAAATTTAAAAAAATCCGGAACCGCA
702 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTA
*
15170814 AAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
766 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
*
15170879 TTAAGGGACCATTGTATGAATTTACAAGCC-TAAAAAATGGCATTGGCACGTAGAAATATGAAGA
831 TTAAGGGACCATTGTATGAATTTACAAGCCAT-AAAAATGGCATTGGCACGCAGAAATATGAAGA
15170943 T
895 T
* *
15170944 GTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCTCTCT-GCCGTCGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* *
15171008 AGTG---CCCG-CCCGCCCGCTCGTTTCATCGGTTGTCTTAGGCATACGGAGTTCATTCCCAGTC
66 AGTGCCACCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * ** ** * * * ** * *
15171069 TAAGATCGGACCGGATTGAGGGTTAAGGCAGTAGGATCAATAGCACGCAGAA-GGGGACCCGTCC
131 TAAGATC-AACTGAACCGAGGGTTGCGACTGCAGGATTGACAGCACGCA-AAGGGGGACCCGACC
* * * * * * * *
15171133 GATCCCTGACCTGCGCTTCCCGCCCCTCTGACCGGTTGAGCACCCGCACGCTCGTTTCATGGG--
194 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
15171196 GACTT-----T---GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
259 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* * * *
15171253 ACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTC-GGCATGTGCTGGTGGCGCATTTTTCTTC
324 ACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * ** ** * * * **
15171317 GTCGAGGCACCATCGCCGGACCATCGTCGAAGAACCAGACCGACGACATTGGGGCTCCGGTGATC
389 ATCGGGGCACCATCG-CTGAGTATCCCCG-AGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* * * * *
15171382 GGGGGGCCCGAGGGG-GTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCTTTATATTGGT
452 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
15171446 CCCCTGTCCCTAATCAAACCTCGAGAACTAACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
517 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* *
15171511 TTGGTGCCATTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
582 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* ** * *
15171576 GTACACTTCGAG-TTGCAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAGGTCTA
647 GTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
15171640 CCAAGTTTGGGGCCAAAACTCCATACGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCA
712 CCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCA
* * *
15171705 AAAATCGTGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
776 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
15171770 GTTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGAT
841 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * *
15171825 GTGCCTAAACCCACCTGCCACCATATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCG--GT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
** ** *
15171888 -GT---A-GTG-CCCGCCCGCTTATTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTC
66 AGTGCCACCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * * ** * * *
15171947 AAAAATCAAACCTG-ACCGAAGGTTGTG-GTAGCAGGATCGGTAGCACGTAGA-GGGGACCCGAT
131 TAAGATC-AA-CTGAACCGAGGGTTGCGACT-GCAGGATTGACAGCACGCAAAGGGGGACCCGAC
* * * * * *
15172009 CGATCCTCGGCTTGTGCATCCCGCCCCTCTAGTCGGTTGAGCGCCCGCACGCTTGTTTCGTGGGT
193 CGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGT
* *
15172074 TGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATATGGAGTTCATTCCC-GTCTAAGAATC
258 TGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG-ATC
* * * * *
15172138 AAACAGGATCGAGGGTTACGGCAGCACATGCTAGGCTCAAGCATGTGCTGGTGCCG-ATTTTTCT
322 AGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCT
* *
15172202 TCATCGGGGCACCATCGCT--G-------GAGAACCTGACCGACGGTATTGGGATTCCGGA-GAT
387 TCATCGGGGCACCATCGCTGAGTATCCCCGAGAACCTGACCGACGGCATTGGGGTTCC-GACGAT
* * * * * *
15172257 CGGGGGGGCCAGGGGGGAGTGCGCAAATGATGTGTGATGGGTTCTGGTACTTGGCCTTTATATTG
451 C-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
** * *
15172322 AACCACTATCCCTCATCAAACCTCGAGAAATCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
515 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
15172387 GTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACCTTTTTCAAATGGTTACAAAATG
580 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* ** **
15172452 TTGTACGCTTTGAGTTTTTAGCTGAA-TTTTTTGCACACCCCAACAAAAATACAAGGATCACGTC
645 TTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * *
15172516 TACCAACTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACTGCAGAAAGTTT
710 TACCAAGTTTGGGGCCAAAACTCC-TTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
15172581 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
774 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* * * **
15172646 CCATTATATGAATTTACAAGCCAAAAAAATGGCATTCGCACATAGAAATATGAAGAT
839 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * *
15172703 GTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
** * * * * *
15172768 AGTGCCTGCC-CCCCGTCCGCTCGTTTCATCAGTTGGCTTAGGCGTACGAAGTTCATTCCCAGTC
66 AGTGCCACCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * *
15172832 TAACATTCAACTGAACCGAGGGTTGCGGCTACAGGATTGACAGCATGCAAAGAGGGACCC-AGCC
131 TAAGA-TCAACTGAACCGAGGGTTGCGACTGCAGGATTGACAGCACGCAAAGGGGGACCCGA-CC
* * * * *
15172896 GATCCTCGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCACGTTCATTTCGT-GG--
194 GATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTT
15172958 G---T-----T---GA---C-TT---AG-----GCATACGGAGTTCATTCCCAGTCTAAGATCAG
259 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG
* ** **
15173000 ACCGGATCGAGGGTTGCGGCAGCACAAGAAGGGCTCAGGCATGTGCTGGTGTTGCATTTTTCTTC
324 ACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTC
* * * *
15173065 ACCGGGGCACCATCGCTAGAGTATCACCCGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATA
389 ATCGGGGCACCATCGCT-GAGTATC-CCCGAGAACCTGACCGACGGCATTGGGGTTCCGACGATC
* *
15173130 GGGGTGGCCGAGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGTTACATGGCCCTTATATT
452 GGGG-GGCCG-GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * *
15173195 GGCCCCCTATCCCTCATCGAATCTCAAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACA
514 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * *
15173260 GGTTTGCTGCCAGTAGCGATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGCCACAAAAT
579 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
*
15173325 CTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCAAGCCAACAAAAATACAAGGATCACGT
644 CTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* ** * * ** * *
15173390 CTACCAACTTTATGGCCAAAAATCCTTCCAAAAAAATTTAAAAAATCCAAAATCATAAAAAGTTT
709 CTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTT
* * * *
15173455 C-AAAATCAAGAAAAACAGAAAACGAGTCGTCTTGCCATGAAACTTTACGTCAAGGCTTAAGGGA
774 CAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
15173519 CTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGAT
839 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * *
15173576 GTGCCTAAACCCACCTACCACCCTATCGATCCACAG-TTGTG-ATCCCATCTCTCTGGCCGACGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* *
15173639 AGTTCCTACCCGCCCGTCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCC
66 AGTGCC-ACCCG-CC--CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCC
* * * ** * * ** *
15173704 AGTCTAAGATCGGATCAGAA-CAAGGGTTATGA-TAGTAGGATTGACAGGACATAGAGGGGGACC
127 AGTCTAAGATC--AACTGAACCGAGGGTTGCGACT-GCAGGATTGACAGCACGCAAAGGGGGACC
* * * * *
15173767 TGATCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGT
189 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
** * * *
15173832 GGGTTGACTTAGGCATACACAATTCATTCCCAGTCTAAGCATAAGAAGTTCATTCCCAGTCTAAG
254 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
15173897 ATC-GAACCGGACCGACGATTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGCTGCTGTATTT
319 ATCAG-ACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTT
** * * * *** * * * *
15173961 TTCTTCGCCGGGGCACCATCACCAGAGCATTGTCGAAGAAGCTAACCGACAGCATTGGGGCTCCG
383 TTCTTCATCGGGGCACCATC-GCTGAGTATCCCCG-AGAACCTGACCGACGGCATTGGGGTTCCG
* * *
15174026 GCGATCGGGGGGATCGGGGGGTGTGTGCGCACATGATGTGCGATAGGTGCTGGTACTTGGCCCTT
446 ACGATCGGGGGG-CCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
*
15174091 ATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
509 ATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
*
15174156 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACCCTTTTTTCAAATGGTCAC
574 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* * *
15174221 AAAATCTTGTACACATT-GAGTTTTTAGCTGAATTTTTTTTTGCAAGCCAACAAAAATACAAGGA
639 AAAATCTTGTACGC-TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGA
** ** *
15174285 TCACGTCTACCAAGTTTATGGCCAAAACTCCTTCCAAAAAAAATTAAAAAATCCCAAACCGTAAA
703 TCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGTAAA
* * * *
15174350 AAGTTTCAAAAATCATGAAAAACAGAAAACGAGTCATCTTGCCATGAAACTTTACGTCAAGGCTT
768 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
**
15174415 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATTCAGAAATATGAAGAT
833 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * * *
15174478 GTGCCTAAACCCACCTACCACCCTATCAATCCACGG-TTGTGCATCCCGTCTCTTTGGCCGGCGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * *
15174542 AGTGCCCACCCGCCCGCCGCCCTCTCGTTTCGTCGGTTGGCTTAGGTATGCGGAGTTCATTCCCA
66 AGTG-CCACCCG-CC-CCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCA
* * * * * * * * * * * *
15174607 GTCTAAGATCATA-TCAAAACAACGGTTGTG-GTAGTAGGATTGACAGGACACAGATGGGGACCT
128 GTCTAAGATCA-ACT-GAACCGAGGGTTGCGACT-GCAGGATTGACAGCACGCAAAGGGGGACCC
* * * * * * **
15174670 AATCGATCCCCGGCTTGCGCATACTGCCCCTCTGGTCGGCTGAGCGCCCGCATGCTAATTTC---
190 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
*
15174732 ----G--TTA-G--T--TGA---CA-T---AG-----GCATACGGAGTTCATTCCCAGTCTAAGA
255 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* * * ** *
15174774 TCGGACCGGATCGATGGTTACGATAGCACATGCTGGGCACAGGCATGTGCTGGTGCCGCATTTTT
320 TCAGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT
* * * * *
15174839 CTTCATTGAGGCACCATCG-TCGAAGCATCACCGGAGAACCTGACCGACGGCATTAGGGTTCCGA
385 CTTCATCGGGGCACCATCGCT-G-AGTATC-CCCGAGAACCTGACCGACGGCATTGGGGTTCCGA
*
15174903 CGATCGGGGGTGCCGGAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
447 CGATCGGGGG-GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
15174968 ATTGGCCCCCTATCCCCCATCAAACCACGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTT
511 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
15175033 ATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCGCAA
576 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
* * ** *
15175098 AATCTTATACACCACGAGTTTGTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
641 AATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* *
15175163 CGTCTTCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAA
706 CGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAAAATTTTAAAAAATCCCGAACCGTAAAAA
** * * *
15175228 GTTTTGAAAATCATGAAAAATAAAAAATGAGTCGTCTTGGCATGAAACTTCACGTGAAGGCTTAA
770 GTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
15175293 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTACGTAGAAATATGAAGAT
835 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
* * * * * **
15175354 GTGCTTAAACCCACCTACCACCCTATTGATCCACGACTTGCGCATCCCGTTTCTCTGGCTGGTGT
1 GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
* * * *
15175419 AGTG---CCCG-TCCGCCCTCTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTC
66 AGTGCCACCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
* * * * * *
15175480 TAAGATCAAACTGGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTG
131 TAAGATC-AACTGAACCGAGGGTTGCGACTGCAGGATTGACAGCACGCAAAGGGGGACCCGACCG
* * * * *
15175545 ATCCCCGGCTTGCGTATCTCGCCCTTCTGGCCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTG
195 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTG
15175610 ACTTAGGCATACGGAGTTCATTCCCAGTCT
260 ACTTAGGCATACGGAGTTCATTCCCAGTCT
15175640 GAGATCGGAT
Statistics
Matches: 7037, Mismatches: 969, Indels: 524
0.82 0.11 0.06
Matches are distributed among these distances:
860 67 0.01
861 33 0.00
864 1 0.00
865 2 0.00
868 2 0.00
869 1 0.00
870 137 0.02
871 31 0.00
872 41 0.01
873 155 0.02
874 228 0.03
875 371 0.05
876 567 0.08
877 184 0.03
878 515 0.07
879 143 0.02
880 80 0.01
881 406 0.06
882 254 0.04
883 38 0.01
884 184 0.03
885 135 0.02
886 82 0.01
887 408 0.06
888 21 0.00
889 1 0.00
890 10 0.00
891 126 0.02
892 23 0.00
893 19 0.00
894 93 0.01
895 324 0.05
896 328 0.05
897 28 0.00
898 51 0.01
899 51 0.01
900 153 0.02
901 486 0.07
902 789 0.11
903 223 0.03
904 236 0.03
905 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (895 bp):
GTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGT
AGTGCCACCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTC
TAAGATCAACTGAACCGAGGGTTGCGACTGCAGGATTGACAGCACGCAAAGGGGGACCCGACCGA
TCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCAT
CGGGGCACCATCGCTGAGTATCCCCGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGG
GGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
TGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAC
GCTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAA
GTTTGGGGCCAAAACTCCTTCCAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAAT
CATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGAT
Found at i:15168573 original size:25 final size:26
Alignment explanation
Indices: 15168535--15168586 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15168525 GTTGACTTAG
15168535 GCATACAGAATTCATTCC-AGTCTAA
1 GCATACAGAATTCATTCCTAGTCTAA
*
15168560 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAATTCATTCCTAGTCTAA
15168586 G
1 G
15168587 ACCGGATCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 17 0.68
26 8 0.32
ACGTcount: A:0.33, C:0.23, G:0.15, T:0.29
Consensus pattern (26 bp):
GCATACAGAATTCATTCCTAGTCTAA
Found at i:15169448 original size:26 final size:25
Alignment explanation
Indices: 15169419--15169470 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
15169409 GTTGACTTAG
*
15169419 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATT-CCAATCTAA
* *
15169445 GCATACAGAGTTCGTTCCAGTCTAA
1 GCATACAGAGTTCATTCCAATCTAA
15169470 G
1 G
15169471 ATCGTACCAG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 9 0.39
26 14 0.61
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACAGAGTTCATTCCAATCTAA
Found at i:15170276 original size:25 final size:25
Alignment explanation
Indices: 15170240--15170291 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
15170230 GGGGACCAGA
*
15170240 CCGATCCTCGGCTTGCGCATCCCGC
1 CCGATCCCCGGCTTGCGCATCCCGC
15170265 CCGATCCCCGGCTTGCGCATCCCGC
1 CCGATCCCCGGCTTGCGCATCCCGC
15170290 CC
1 CC
15170292 CTCTGGCCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.08, C:0.52, G:0.23, T:0.17
Consensus pattern (25 bp):
CCGATCCCCGGCTTGCGCATCCCGC
Found at i:15172118 original size:26 final size:25
Alignment explanation
Indices: 15172082--15172133 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 25
15172072 GTTGACTTAG
15172082 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGAGTTCATTC-CAGTCTAA
* *
15172108 GCATATGGAGTTCATTCCCGTCTAA
1 GCATACGGAGTTCATTCCAGTCTAA
15172133 G
1 G
15172134 AATCAAACAG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
25 8 0.33
26 16 0.67
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCAGTCTAA
Found at i:15175729 original size:154 final size:156
Alignment explanation
Indices: 15175435--15175801 Score: 461
Period size: 154 Copynumber: 2.3 Consensus size: 156
15175425 CGTCCGCCCT
* * *
15175435 CTCGTTTTGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAAACTGGACCGAG
1 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT---ACTGGACCGAG
* * * * * *
15175500 GGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGTATCTC
63 GGTTGCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCCGACCGATCCCCAGCTTACGCATCCC
15175565 GCCCTTCTGGCCGGCTGAGCACCCGCACG
128 GCCCTTCTGGCCGGCTGAGCACCCGCACG
* * *
15175594 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTGAGAT-C-GGATCGATGGT
1 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACTGGACCGAGGGT
* * *
15175657 TGTGGCAGCAGGATCGGCAGCACGTAGAGAGGGACCCGACCGATCCCCAGCTTACGCATCCCG-C
66 TGCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCCGACCGATCCCCAGCTTACGCATCCCGCC
* ** *
15175721 CTCTCTGGCCGGTTGAGCACTTGTACG
131 CT-TCTGGCCGGCTGAGCACCCGCACG
** * *
15175748 CTCGTTTCATGGGTTGACTTAAGCATACGAAGTTCATTCCCAGTCTAAGCATAC
1 CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-ATAC
15175802 AGAGCTCCTT
Statistics
Matches: 181, Mismatches: 24, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
153 3 0.02
154 127 0.70
155 3 0.02
156 1 0.01
159 47 0.26
ACGTcount: A:0.19, C:0.28, G:0.29, T:0.24
Consensus pattern (156 bp):
CTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATACTGGACCGAGGGT
TGCGGCAGCAGGATCGACAGCACGCAGAGAGGGACCCGACCGATCCCCAGCTTACGCATCCCGCC
CTTCTGGCCGGCTGAGCACCCGCACG
Found at i:15175797 original size:26 final size:26
Alignment explanation
Indices: 15175767--15175822 Score: 78
Period size: 26 Copynumber: 2.2 Consensus size: 26
15175757 TGGGTTGACT
*
15175767 TAAGCATAC-GAAGTTCATTCCCAGTC
1 TAAGCATACAG-AGCTCATTCCCAGTC
*
15175793 TAAGCATACAGAGCTCCTTCCCAGTC
1 TAAGCATACAGAGCTCATTCCCAGTC
15175819 TAAG
1 TAAG
15175823 ATCGGACCAG
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
26 26 0.96
27 1 0.04
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (26 bp):
TAAGCATACAGAGCTCATTCCCAGTC
Found at i:15178983 original size:873 final size:871
Alignment explanation
Indices: 15177292--15179068 Score: 2495
Period size: 873 Copynumber: 2.0 Consensus size: 871
15177282 GTCTCTCTGG
* * * * **
15177292 CTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCGGACCGAACCGAGGGTTGCGGCAGCATTTG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTCCGGCAGCACATG
* ** * * * *
15177357 CTGGGCTTAGACATGTGCTAGAGCTGCATTTTTCTTTGTCGGGGCACGATCGTCGGAGCATCATT
66 CTGGGCTGAGACATGTGCTAGAGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACT
** * * * *
15177422 GGAGAACATAACCGTCAGCATTGGGCTTCCGATGATTGGGGGGGCCAGGGGGTGTACGCACATGA
131 GGAGAACATAACCAACAGCATTGGGCTTCCGACGATTCGGGGGGCCAGGAGGTGTACACACATGA
* ** *
15177487 TGTGCGATGGGCGGTGGTACTTGGCCTTATATTGGCCCCTTATCCCTCATCAAACCTTGAGAGCT
196 TGTGCGATGGGCGCTGGTACTTGGCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACT
*
15177552 CACACACCCTTAAGGAGCATTTGACATTATACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
261 CACACACCCTTAAAGAGCATTTGACATTATACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** * *
15177617 AATGGGGACGTTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAGTTTT
326 AATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGCTTTTAGCTGAAGTTTT
* * **
15177682 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACAAAGTTTGGGGCCAAAACTCCTTCCGAA
391 TTATGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGAAAAAACTCCTTCCGAA
**
15177747 AAAATTTAAAAAAATCCCGAACCGAAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGT
456 AAAATTTAAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
15177812 CTTGCCATGAAACTTAACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
521 CTTGCCATGAAACTTAACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
15177877 GCACAGGCATGCAGAAATATGAAGATGTGACTAAAGCCACCAACCACCCTATCGATCCATGGCTT
586 GAACAGGCATGCAGAAATATGAAGATGTGACTAAACCCACCAACCACCCTATCGATCCACGGCTT
* * * * * * **
15177942 GCGCGTCTCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTGCCCGCTCATCTTTTCAGTTGGCT
651 GCGCATCCCGTCTCTCTAGCCGACGTAGTGCCAGCCCGCCCACCCGCTCATCTTTTCAGTTGGCT
* *
15178007 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCGAATCGAGGGTTGCATGAGCAAGATCG
716 TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTG-ATGAGCAAGACCG
* ** * *
15178072 ACAGCACGCAGAGGGGGACCCGGTCGATCCTCGACTTGCGCATCTTACCCCTTTAGCCGATTGAG
780 ACAGCACGCAGAGGGGGACCCAGTCGATCCTCGACTTGCGCATCCCACCCCTCTAGCCGACTGAG
*
15178137 CGCCCGCACGCTCATTTCATGGGTTGA
845 CGCCCGCACGCTCATTTCATCGGTTGA
* * *
15178164 CTTAGGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCGGATAGAGGGTTCCGGCAGCACATG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTCCGGCAGCACATG
* * * *
15178229 CTGGGCTCGAG-TATGTGCTGGTGCCACATTTTTCTTCGCCGGGGTACCATCG-CTGGAGCATCA
66 CTGGGCT-GAGACATGTGCTAGAGCCACATTTTTCTTCGCCGGGGCACCATCGTC-GGAGCATCA
* * * * * * *
15178292 CTGGAGCACCTGACCAACGGCATTGGGGTTCCGGCGA-TCGGGGGGCCGAGGAGGTGTGCACACA
129 CTGGAGAACATAACCAACAGCATTGGGCTTCCGACGATTCGGGGGGCC-AGGAGGTGTACACACA
*
15178356 TGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAG
193 TGATGTGCGATGGGCGCTGGTACTTGG-CCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAG
* * * *
15178421 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGGCATTAAAGTGT
257 AACTCACACACCCTTAAAGAGCATTTGACATTATACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* * * *
15178486 GTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACCCTTCGAGCTTTTAGTTGAAT
322 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGCTTTTAGCTGAAG
* * *
15178551 TTTTTTATGCATGCCAACAAAAATACAATGATCACGTCTACCATGTTTGGGGAAAAAACTCCTTC
387 TTTTTTATGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGAAAAAACTCCTTC
* * *
15178616 CGAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
452 CGAAAAAATTTAAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAG
* *
15178681 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
517 TCGTCTTGCCATGAAACTTAACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAA
** * * *
15178746 AATGGAATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGGTCCACG
582 AATGGAACAGGCATGCAGAAATATGAAGATGTGACTAAACCCACCAACCACCCTATCGATCCACG
* * ** *
15178811 GCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTTCCAGCCTGCCCACTTGCTCGT-TTTGTCAGT
647 GCTTGCGCATCCCGTCTCTCTAGCCGACGTAGTGCCAGCCCGCCCACCCGCTCATCTTT-TCAGT
*
15178875 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTG-TGGCAGCA
711 TGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGAT-G-AGCA
* *
15178939 AGACCGGCAGCACGCAGAGGGGGACCCAGTCGATCC-CTGACTTGCGCATCCCGCCCCTCTAGCC
774 AGACCGACAGCACGCAGAGGGGGACCCAGTCGATCCTC-GACTTGCGCATCCCACCCCTCTAGCC
* * * * *
15179003 GGCTGAGCGCCCGCATGCTCGTTTCGTCGGTTGG
838 GACTGAGCGCCCGCACGCTCATTTCATCGGTTGA
* *
15179037 CTTAGGCACACGGAGTTCATTCCAAGTCTAAG
1 CTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15179069 CATACGGAGT
Statistics
Matches: 792, Mismatches: 105, Indels: 15
0.87 0.12 0.02
Matches are distributed among these distances:
871 11 0.01
872 174 0.22
873 607 0.77
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (871 bp):
CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACAGAGGGTTCCGGCAGCACATG
CTGGGCTGAGACATGTGCTAGAGCCACATTTTTCTTCGCCGGGGCACCATCGTCGGAGCATCACT
GGAGAACATAACCAACAGCATTGGGCTTCCGACGATTCGGGGGGCCAGGAGGTGTACACACATGA
TGTGCGATGGGCGCTGGTACTTGGCCTTATATTGGCCCCTTATCCCTCATCAAACCTCAAGAACT
CACACACCCTTAAAGAGCATTTGACATTATACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
AATGGGGACACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGAGCTTTTAGCTGAAGTTTT
TTATGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTTGGGGAAAAAACTCCTTCCGAA
AAAATTTAAAAAAATCCCGAACCGAAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
CTTGCCATGAAACTTAACGTGAAGGCTGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
GAACAGGCATGCAGAAATATGAAGATGTGACTAAACCCACCAACCACCCTATCGATCCACGGCTT
GCGCATCCCGTCTCTCTAGCCGACGTAGTGCCAGCCCGCCCACCCGCTCATCTTTTCAGTTGGCT
TAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGACCAAATCGAGGGTTGATGAGCAAGACCGA
CAGCACGCAGAGGGGGACCCAGTCGATCCTCGACTTGCGCATCCCACCCCTCTAGCCGACTGAGC
GCCCGCACGCTCATTTCATCGGTTGA
Found at i:15179197 original size:185 final size:185
Alignment explanation
Indices: 15178883--15179253 Score: 519
Period size: 185 Copynumber: 2.0 Consensus size: 185
15178873 GTTGGCTTAG
*
15178883 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGTGGCAGCAAGACCGGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGTGGCAACAAGACCGGCA
** *
15178948 GCACGCAGAGGGGGACCCAGTCGATCCCTGACTTGCGCATCCCGCCCCTCTAGCCGGCTGAGCGC
66 GCACGCAGAGGGGGACCCAACCGATCCCTGACTTGCGCATCCCACCCCTCTAGCCGGCTGAGCGC
* * *
15179013 CCGCATGCTCGTTTCGTCGGTTGGCTTAGGCACACGGAGTTCATTCCAAGTCTAA
131 CCACACGCTCATTTCGTCGGTTGGCTTAGGCACACGGAGTTCATTCCAAGTCTAA
* * * * *
15179068 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGTGGCAACAGGACCTGCA
1 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGTGGCAACAAGACCGGCA
* * * * *
15179133 GCACGCAGATGGGGACCCAACCGATCCCCTG-CTTGTGCATCTCACCCCTCTGGCCGGTTGAGCG
66 GCACGCAGAGGGGGACCCAACCGAT-CCCTGACTTGCGCATCCCACCCCTCTAGCCGGCTGAGCG
* * * * **
15179197 CCCATACGCTCATTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCCGGTCTAA
130 CCCACACGCTCATTTCGTCGGTTGGCTTAGGCACACGGAGTTCATTCCAAGTCTAA
15179253 G
1 G
15179254 ATTGGACCAA
Statistics
Matches: 162, Mismatches: 23, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
185 157 0.97
186 5 0.03
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (185 bp):
GCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGTGGCAACAAGACCGGCA
GCACGCAGAGGGGGACCCAACCGATCCCTGACTTGCGCATCCCACCCCTCTAGCCGGCTGAGCGC
CCACACGCTCATTTCGTCGGTTGGCTTAGGCACACGGAGTTCATTCCAAGTCTAA
Found at i:15180113 original size:26 final size:26
Alignment explanation
Indices: 15180076--15180128 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15180066 GTTGACTTAG
* *
15180076 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15180102 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATTCCCAGTCTAA
15180128 G
1 G
15180129 ATCAAATCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAAAGTTCATTCCCAGTCTAA
Found at i:15180243 original size:185 final size:185
Alignment explanation
Indices: 15179925--15180342 Score: 588
Period size: 185 Copynumber: 2.3 Consensus size: 185
15179915 AGGCGTACGG
* * * *
15179925 AGTTCATTCCCAGTCTAAGATCAGATCGGATCAAAGGTTGTGATAGCAGGATCGGTAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCAAATCGGATCGAAGGTTGCGACAGCAGGATCGGTAGCACACAG
* * * * *
15179990 AGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGGCTGAGCACCCACACGC
66 AGAGGGACCCAGTCGATCCCCAGCTTGCGCATCCCGCCCCACTGGCCGGCTGAGCAACCACACGC
* *
15180055 TCGTGTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAAGCATACAA
131 TCGTGTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAA
*
15180110 AGTTCATTCCCAGTCTAAGATCAAATCGAATCGAAGGTTGCGACAGCAGGATCGGTAGCACACAG
1 AGTTCATTCCCAGTCTAAGATCAAATCGGATCGAAGGTTGCGACAGCAGGATCGGTAGCACACAG
** * * * *
15180175 AGAGGGACCC-GATTTATCCCCAGCTTGTGCATCCCGCCCCACTGGCCGGTTGAGCAACCGCGCG
66 AGAGGGACCCAG-TCGATCCCCAGCTTGCGCATCCCGCCCCACTGGCCGGCTGAGCAACCACACG
* * **
15180239 CTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
130 CTCGTGTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAA
* *
15180295 AGTTCATTCCCAGTCTAAGATCGAATCGGA-CGAAGGGTTACGACAGCA
1 AGTTCATTCCCAGTCTAAGATCAAATCGGATCGAA-GGTTGCGACAGCA
15180343 CATGCTACGC
Statistics
Matches: 206, Mismatches: 25, Indels: 4
0.88 0.11 0.02
Matches are distributed among these distances:
184 5 0.02
185 201 0.98
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (185 bp):
AGTTCATTCCCAGTCTAAGATCAAATCGGATCGAAGGTTGCGACAGCAGGATCGGTAGCACACAG
AGAGGGACCCAGTCGATCCCCAGCTTGCGCATCCCGCCCCACTGGCCGGCTGAGCAACCACACGC
TCGTGTCGTGGGTTAACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACAA
Found at i:15180297 original size:26 final size:26
Alignment explanation
Indices: 15180261--15180313 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15180251 GTTAACTTAG
15180261 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15180287 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15180313 G
1 G
15180314 ATCGAATCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15181168 original size:26 final size:26
Alignment explanation
Indices: 15181132--15181190 Score: 118
Period size: 26 Copynumber: 2.3 Consensus size: 26
15181122 GTTGACTTAG
15181132 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15181158 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15181184 GCATACG
1 GCATACG
15181191 AGTCATCCAG
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 33 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15182970 original size:26 final size:26
Alignment explanation
Indices: 15182934--15182986 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15182924 GTTGACTTAG
*
15182934 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15182960 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15182986 G
1 G
15182987 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15183941 original size:171 final size:171
Alignment explanation
Indices: 15183651--15183961 Score: 433
Period size: 171 Copynumber: 1.8 Consensus size: 171
15183641 CCCGCCGTCG
* *
15183651 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGAATGAGGGTT
1 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTAGACCAGAATGAGGGTT
* * * * * * **
15183716 GCTGCTGCAAGATCGGCAGTACCCAGAGGGGGACCCAACCAATCCCCGACTTGCGCATCCGGCCC
66 ACAGCAGCAAGATCGACAGCACACAGAGGGGGACCCAACCAATCCCCGACTTGCGCATCCCACCC
15183781 CTCTGACCGGTGTAGTGCCCGTCCGTCTGTCCGCCCTCTCA
131 CTCTGACCGGTGTAGTGCCCGTCCGTCTGTCCGCCCTCTCA
* ** *
15183822 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTGGACTGGACTGAGGGTT
1 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTAGACCAGAATGAGGGTT
* * * * * *
15183887 ACAGCAGTAGGATCGACAGCACATAGAGGGGGACCCGACCGATCCTCGACTTGCGCATCCCACCC
66 ACAGCAGCAAGATCGACAGCACACAGAGGGGGACCCAACCAATCCCCGACTTGCGCATCCCACCC
*
15183952 CTCTGGCCGG
131 CTCTGACCGG
15183962 CTGAGCGCCC
Statistics
Matches: 119, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
171 119 1.00
ACGTcount: A:0.20, C:0.30, G:0.28, T:0.22
Consensus pattern (171 bp):
TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACTAGACCAGAATGAGGGTT
ACAGCAGCAAGATCGACAGCACACAGAGGGGGACCCAACCAATCCCCGACTTGCGCATCCCACCC
CTCTGACCGGTGTAGTGCCCGTCCGTCTGTCCGCCCTCTCA
Found at i:15184168 original size:185 final size:185
Alignment explanation
Indices: 15183848--15184245 Score: 521
Period size: 185 Copynumber: 2.2 Consensus size: 185
15183838 AGGCATACGG
* * * * ** * * ** **
15183848 AGTTCATTCCCAGTCTAAGA-CTGGACTGGACTGAGGGTTACAGCAGTAGGATCGACAGCACATA
1 AGTTCATTCCCAGTCTAAGATC-AGACCGGATTGAGGGCTATGGTAGCAGGATCGGTAGCATGTA
* *
15183912 GAGGGGGACCCGACCGATCCTCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACG
65 GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACA
* * ***
15183977 CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCAAATGG
130 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATGACCAGTCTAAGCAAACAA
*
15184033 AGTTCTTTCCCAGTCTAAGATCAGACCGGATTGAGGGCTATGGTAGCAGGATCGGTAGCATGTAG
1 AGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGCTATGGTAGCAGGATCGGTAGCATGTAG
* * * *
15184098 AGGGGGACCCGACCGATCCCC-AGCTTGCGTATCCCGCCCCTCTGGCCGGCTGAGCGCTCGTACA
66 AGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACA
* *
15184162 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATGCCCAGTCTAAGCATACAA
130 CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATGACCAGTCTAAGCAAACAA
*
15184218 AGTTCATTCCCAGTCTAAGATCGGACCG
1 AGTTCATTCCCAGTCTAAGATCAGACCG
15184246 AACCGAGGGT
Statistics
Matches: 183, Mismatches: 28, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
184 1 0.01
185 181 0.99
186 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.22
Consensus pattern (185 bp):
AGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGCTATGGTAGCAGGATCGGTAGCATGTAG
AGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACAC
TCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATGACCAGTCTAAGCAAACAA
Found at i:15184213 original size:26 final size:26
Alignment explanation
Indices: 15184184--15184236 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15184174 GTTGACTTAG
*
15184184 GCATACAGAGTTCATGCCCAGTCTAA
1 GCATACAAAGTTCATGCCCAGTCTAA
*
15184210 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATGCCCAGTCTAA
15184236 G
1 G
15184237 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATGCCCAGTCTAA
Found at i:15185774 original size:26 final size:26
Alignment explanation
Indices: 15185745--15185795 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15185735 GGTTCCTTAG
* *
15185745 GCATAATGAGTTCATTCCAGTCTAAA
1 GCATAAGGAGTTCACTCCAGTCTAAA
*
15185771 GCATACGGAGTTCACTCCAGTCTAA
1 GCATAAGGAGTTCACTCCAGTCTAA
15185796 GATCATACAA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (26 bp):
GCATAAGGAGTTCACTCCAGTCTAAA
Found at i:15187538 original size:26 final size:26
Alignment explanation
Indices: 15187508--15187589 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
15187498 TGGGTTGACT
*
15187508 TAAGCATACGGAGTTCGTTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
*
15187534 TAAGCATACGGAGTTAATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15187560 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15187586 TAAG
1 TAAG
15187590 ATCGTATCGG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.27
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15190751 original size:898 final size:896
Alignment explanation
Indices: 15188421--15191165 Score: 3744
Period size: 905 Copynumber: 3.0 Consensus size: 896
15188411 GTCGACTTAG
* ** *
15188421 GCATACGGAGTTCATTCCCATTCTAAGATCGGACCACATCGAGGGTTACGGCAGCACAAGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGG
* * *
15188486 CTCGGGCATGTGTTGGTGCCGCATTTTTCCTCACCGGGCCACCATCGCCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
15188551 ACCTGACCGGTGGCATTGGGGTTCCGGTGATCGAGGGGGCCGGAGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGG-GGGGGTGTGCGCACATGATGT
*
15188616 GC-AATGGGTGCTGGTCCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
195 GCGAA-GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* **
15188680 ACACCCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGA
259 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAA
*
15188745 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGATTTTTTT
324 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * ** *
15188810 TATGCATGCCAAAAAAAATACAAGCATCACGTCTACTGAGGTTGTTGTAAAACTCCTTTCGAAAA
389 TGTGCATGCCAAAAAAAATACAAGAATCACGTCTAC-CAAGTTGGGGCAAAACTCCTTTCGAAAA
* * *
15188875 AATTTTAAAAAATCCCAAACCCCAAAAAGATTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
453 AATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCT
* * *
15188940 TGCCTTGAAACTTCACATGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15189005 ATTGGCACGCAGAAATATGAAAACGTGCCTAGACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * **
15189070 GCATCCCGACTCTCTGGCCGGCGTAGTGCCCGCCCACCCACCCGCCCGCTCTTTTTGTCGGTTGG
648 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG----CCCGCCCGCCCGCTCATTTCATCGGTTGG
* *** * * *
15189135 CTTAGGCATACGGAGTTCATTCCCAGTCTCGGATTTCACCGGGCTGAGGATTGCAGTAGTAGGAT
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGGCTGAGGGTTACAGTAGCAGGAT
** * * * *
15189200 CGACAGCACACAGAGATGGACTCGATCGATCCTCGACTTTCGCATCCTGCCCCTCTGGCCAGCTG
774 CGGTAGCACACAGAGATGGACCCGACCGATCCCCGACTGT-GCATCC-GCCCCTCTGGCCAGCTG
* ** * * *
15189265 AGCTCTTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGTGTTAATTCCCAGTCTAA
837 AGCACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
15189325 GCATACGGAGTTCATTCCCAGTCAAAGATCAGACCAGG-CCGAGGGTTGCGGCAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACC-GGATCGAGGGTTACGGCAGCACATGCTGG
* * * *
15189389 GCTCGGGCATGTGTTGGAGCCGTATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
15189454 AACCTGACCGACGGCACTGGGGTTCCGGTGATCGGGGGGGCCGAGGGGGGTATGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATG
* * * *
15189519 TGCGATGGGTGCTGATACTTGGCCCTTACATTGGCCCCCCTGTCCCTCATCAAACCTCGAGAACT
194 TGCGAAGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACT
*
15189584 CACACCCCCTTTAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
258 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAA
*
15189649 AATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
323 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
15189714 TTGTGCATGCCAATAAAAATAAAAGGATCACGTCTACCAAGTTGGGGCAAAAACTCCTTTCGAAG
388 TTGTGCATGCCAAAAAAAATACAAGAATCACGTCTACCAAGTTGGGGC-AAAACTCCTTTCGAAA
* * *
15189779 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATATAAAACGAGTCGTC
452 AAATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTC
*
15189844 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15189909 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTTCCCCCCTATCGATCCACGACTTG
582 CATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * ** * *
15189974 CGCATCCAGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGTCTGCTGGTTTCAACAGTTGGCTT
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTT
* * * *
15190039 AGGCATATGGAGTTCATTCCCAGTCGAGGATCAGACTGGGCTGAGGGTTACAGTAACAGGATCGG
712 AGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGGCTGAGGGTTACAGTAGCAGGATCGG
* * *
15190104 TGGCATATAGAGATGGACCCGACCGATCCCCGACTCGTGCATCTCGCCCCTCTGGCC-GACTGAG
777 TAGCACACAGAGATGGACCCGACCGATCCCCGACT-GTGCATC-CGCCCCTCTGGCCAG-CTGAG
* * * *
15190168 CGCCCGCACACTCGATTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATATAA
839 CACCCGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
15190226 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGATTGAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
15190291 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCACCGGGGCACCATCGTCTGAGCTTCGTCAGAGA
66 CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
15190356 ACCTGATCGGCGGCATTGGGGTTCTGGCGATTGGGGGGGCC-GGGGGGTGTGCACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
15190420 CGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTCAC
196 CGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * *
15190485 ACCCCCTTAAAGAGCATTTGAGATTGTACAGGTTTGCTGCCAGAAGCCAATAAAGTGTCTCAAAT
261 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
* * * *
15190550 GGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACGCTGCGAGTTTTAAGCTGAATTTTTTTG
326 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
15190615 TG-ATGACAAAAAAAATACAAGAATCACGTCTACCAAGTTTGGGGGCAAAACTCCTTTCGAAAAA
391 TGCATGCCAAAAAAAATACAAGAATCACGTCTACCAAG-TT-GGGGCAAAACTCCTTTCGAAAAA
* * *
15190679 ATTTTAAAAAATCTCAAATCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
454 ATTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTT
* * * **
15190744 TCCATGAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATTCAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15190809 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATCGATACACGGCTTGCG
584 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
15190874 CATCCCGTCTCTCTAGCCGACGTAGTGCCCACCCGCCCGCCCACCCGCTCATTTCATCGGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGC
* * * * * * *
15190939 TTTGGTAGACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAC-GATAGCAGGAT
710 TTAGGCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGGCTGAGGGTTACAG-TAGCAGGAT
* * * * * * *
15191003 CAGTAGCACACAGA-AGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCTTCTAGCCAGCT
774 CGGTAGCACACAGAGA-TGGACCCGACCGATCCCCGAC-TGTGCAT-CCGCCCCTCTGGCCAGCT
* *
15191067 GAGCACCCGCACGA-TCGTTTTGTGGGTTAACTTAGGCATAC-GAAGTTCATTCCCAGTCTAA
836 GAGCACCCGCAC-ACTCGTTTCGTGGGTTGACTTAGGCATACAG-AGTTCATTCCCAGTCTAA
* *
15191128 GCATACGGAGTTAATTCCCAGTCTAAGATCAGACCGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGA
15191166 CCGAATGTTG
Statistics
Matches: 1614, Mismatches: 205, Indels: 46
0.87 0.11 0.02
Matches are distributed among these distances:
897 31 0.02
898 372 0.23
899 55 0.03
900 3 0.00
901 322 0.20
902 211 0.13
903 4 0.00
904 205 0.13
905 411 0.25
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (896 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTACGGCAGCACATGCTGGG
CTCGGGCATGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGTGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
CGAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
TGCATGCCAAAAAAAATACAAGAATCACGTCTACCAAGTTGGGGCAAAACTCCTTTCGAAAAAAT
TTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGGCTGAGGGTTACAGTAGCAGGATCGGTAGC
ACACAGAGATGGACCCGACCGATCCCCGACTGTGCATCCGCCCCTCTGGCCAGCTGAGCACCCGC
ACACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:15191131 original size:26 final size:26
Alignment explanation
Indices: 15191102--15191154 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15191092 GTTAACTTAG
*
15191102 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
*
15191128 GCATACGGAGTTAATTCCCAGTCTAA
1 GCATACGAAGTTAATTCCCAGTCTAA
15191154 G
1 G
15191155 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTAATTCCCAGTCTAA
Found at i:15191259 original size:185 final size:185
Alignment explanation
Indices: 15190947--15191359 Score: 504
Period size: 185 Copynumber: 2.2 Consensus size: 185
15190937 GCTTTGGTAG
* *
15190947 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGATAGCAGGATCAGTAGCAC
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCAGTAGCAC
* * * *
15191012 ACAGAAGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCTTCTAGCCAGCTGAGCACCCGC
66 ACAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTAGCCAGCTGAGCACCCGC
* ** * *
15191077 ACGATCGTTTTGTGGGTTAACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCAT
131 ACGATCATTTCATGGGTTAACTTAGGCATACGAACTTCATTCACAGTCTAAGCAT
* * * ** * * *
15191132 ACGGAGTTAATTCCCAGTCTAAGATCAGACCGGACCGAATGTTGTGGCAGTAGGAT-TGATAGCA
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCAG-TAGCA
** * * * * *
15191196 CGTAGAGGGGGACCCGATCGATCCCCGACTTGCGTATCCCACCCCTCTGGCCGGCTGAGCACCCG
65 CACAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTAGCCAGCTGAGCACCCG
* * * * *
15191261 CACGCTCATTTCATGGGTTGACTTAGGCATATGGACTTCATTCATAGTCTAAGCAT
130 CACGATCATTTCATGGGTTAACTTAGGCATACGAACTTCATTCACAGTCTAAGCAT
* * *
15191317 ACGGAGTTCATTCTCAGTCTAAGATCGGACCAGACCGAGGGTT
1 ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTT
15191360 GCAGCAGGAA
Statistics
Matches: 190, Mismatches: 37, Indels: 2
0.83 0.16 0.01
Matches are distributed among these distances:
184 1 0.01
185 189 0.99
ACGTcount: A:0.24, C:0.28, G:0.26, T:0.22
Consensus pattern (185 bp):
ACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAAGGTTACGACAGCAGGATCAGTAGCAC
ACAGAAGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTAGCCAGCTGAGCACCCGC
ACGATCATTTCATGGGTTAACTTAGGCATACGAACTTCATTCACAGTCTAAGCAT
Found at i:15191317 original size:26 final size:26
Alignment explanation
Indices: 15191287--15191346 Score: 72
Period size: 26 Copynumber: 2.4 Consensus size: 26
15191277 GTTGACTTAG
*
15191287 GCATATGGACTTCATTCAT-AGTCTAA
1 GCATACGGACTTCATTC-TCAGTCTAA
*
15191313 GCATACGGAGTTCATTCTCAGTCTAA
1 GCATACGGACTTCATTCTCAGTCTAA
15191339 G-AT-CGGAC
1 GCATACGGAC
15191347 CAGACCGAGG
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 23 0.77
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (26 bp):
GCATACGGACTTCATTCTCAGTCTAA
Found at i:15194195 original size:26 final size:26
Alignment explanation
Indices: 15194159--15194211 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15194149 GTTGACTTAG
*
15194159 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATAAGGAGTTCATTCCAAGTCTAA
*
15194185 GCATACGGAGTTCATTCCAAGTCTAA
1 GCATAAGGAGTTCATTCCAAGTCTAA
15194211 G
1 G
15194212 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATAAGGAGTTCATTCCAAGTCTAA
Found at i:15195085 original size:26 final size:26
Alignment explanation
Indices: 15195051--15195103 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15195041 GTTGACTTAG
* *
15195051 GCATGCGGATTTCATTCCAAGTCTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
* *
15195077 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCAAGTCTAA
15195103 G
1 G
15195104 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCAAGTCTAA
Found at i:15195560 original size:903 final size:900
Alignment explanation
Indices: 15192163--15195840 Score: 4786
Period size: 904 Copynumber: 4.1 Consensus size: 900
15192153 TGCGCCCGTA
* * * **
15192163 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCGGACCG
1 TGCT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * * ** * *
15192228 AGGATTGCGGCAGTAGGATTGATAGCATGCAAAGGGGGACCCGATCGATCCCCAACTTGCGCATC
65 AGGGTTGCGGCAGCAAGATTGGTAGCATGCAGAGGGGGACCCGGCCGATCCTCGACTTGCGCATC
* * * * *
15192293 CCACCCCTCTGGCCGACTGAGCGCACGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTT
130 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * * ** *
15192358 CATTCCTAGTCTAAGCATATGGTGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGCGG
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* * * *
15192423 CAGCACATGCTGGGCTTGGGCATGTGCTGGTGTCACATTTTTCTTCGTCGGGGCACCATCATCAA
260 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCATCGA
* * *
15192488 GGCATCGCCGGAGAACCTGATCGGTC-GCATTGGGGTTCCGACGATCGGGGGGGTCG-GGGGGTG
325 -GCATCGCCGGAGAACCTGA-CCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTG
*
15192551 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCAATATCCCTCATCAA
388 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAA
*
15192616 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGT
452 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * * *
15192681 TAAAGTATCTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTT
517 TAAAGTATCTGAAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTT
* *
15192746 AGCTAAATTTTTTTGTGCGTGCCAAACAAAAATACAGGGATCACGTCAACCAAGTTTGGGGCCAA
582 AGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAGGGATCACGTCAACCAAGTTTGGGGCCAA
* *
15192811 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCCTGAAAAATA
646 AACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* * * *
15192876 GAAAATGAGTCATCTTGCCATGAAACTTCAGGTGAAGGCTTAAAGGAGCATTGTATGAATTTACA
711 GAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * ** *
15192941 AGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGCTGTGTGTAAACCCACCTACCACACTAT
776 AGCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTAT
** * * *
15193006 CGATCCACGATTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCATC
841 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-GC
* * * *
15193067 TGCTTGTTTCGTCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAATATCAGACCAGACTG
1 TGC-TGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * * *
15193132 AGGGTTACGGCAGCAAGATTGGTAGCAAGAAGAGAGGGACCCGGCCGATCCTTGACTTTTC-CAT
65 AGGGTTGCGGCAGCAAGATTGGTAGCATGCAGAGGGGGACCCGGCCGATCCTCGAC-TTGCGCAT
*
15193196 CCCGCCCCTCTGGCAGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
129 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
* * **
15193261 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAGTCCAAGATCGGACCGGACCGAAAGTTGCG
194 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
* * * *
15193326 GCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCGCATTTTTCTACCCCGGGGCACCATCATCG
259 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCATC-
** * *
15193391 GAGCATCGCCAAAAAACCTGACCGACGGAATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTG
323 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTG
* * *
15193456 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTTATCAAT
388 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAA
*
15193521 CCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
453 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* *
15193586 AAAGTATCTGAAATGGGGACACTTTTTTCAAATGATCCCAAAATCTTGTACACTTCGAGTTTTTA
518 AAAGTATCTGAAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTA
* * * * *
15193651 GCTGAATTTTTTTATGCATGCC-ACAAAAATAAAAGGATCACATCTACCAAGTTTGGGGCCAAAA
583 GCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCAACCAAGTTTGGGGCCAAAA
* * * *
15193715 ATCCTTACAGAAAAAA-TTTAAAAAATCCCG-ACCCCAAAAAG-TTCAAAACCCAAATCATG-AA
648 CTCCTT-CCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTC--AA---AAATCATGAAA
* ** * *
15193776 AATAAAAAACGAGTTGTC-TGCCAATGAAACGTCACGTGAAAGCCTTAAGGGACCATTGTATGAA
707 AATAGAAAACGAGTCATCTTGCC-ATGAAACTTCACGTG-AAGGCTTAAGGGACCATTGTATGAA
* * *
15193840 TTTACAAGCCAT-AAAATGGGCATTGGAATGGTAGAAATTATGAACACATGT-CCTAAACCCACC
770 TTTACAAGCCATAAAAAT-GGCATTGGCA-CGTAGAAA-TAT-AA-AGATGTGCCTAAACCCACC
* * *
15193903 AACC-CCCTATCGATCCACGGCTAGCGGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCC
830 TACCACCCTATCGATCCACGGCTTGC-GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC
*
15193967 ACACCCG-
894 -CGCCCGC
* * * *
15193974 T--TGTTTCATCCGTTGGCTTAGGCATACGGAGTTCCATTCCCACTCTAAGATCAGAACCGGACA
1 TGCTGTTTCGTCGGTTGGCTTAGGCATACGGAGTT-CATTCCCAGTCTAAGATCAG-ACCGGACC
* * * *
15194037 GAGGGTTGCGTGCATGCAGGATGGGTAAGCATGCAGAGGGGGACCCGGTCGAT-CTCCGGCTTGC
64 GAGGGTTGCG-GCA-GCAAGATTGGT-AGCATGCAGAGGGGGACCCGGCCGATCCT-CGACTTGC
* * * *
15194101 GCATGCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATAAG
125 GCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACG
* *
15194166 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGAGCGAGGGT
190 GAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGT
* ** * * * *
15194231 TGTGGCAGCACATGCTGGGCTCGACCATGTGCTTGTGTCGCATTTTTCTTCGCTGGGGCA-C--C
255 TGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATC
* * * * * *
15194293 ATC--GC-T----GGAGAACCTAACCAACGGCATTAGGGTTCCGACGATCAGGAGGGCCGGGGGG
320 ATCGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGG
* * *
15194351 GTGTGCACACATGATGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCTTATCACTAAT
385 GTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCAT
15194416 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
449 CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGC
* * * *
15194481 CATTAAAGTGTTTGAAATAGGGACACTTTTTTAAAATGATCGCAAAATCTTGTACACTTCGAGTT
514 CATTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTT
* * * *
15194546 TTTACCTGAATTTTTTTGTGCATGCCTACAAAAATAGAGGGATCACGTCTACCAAGTTTGGGGCC
579 TTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCAACCAAGTTTGGGGCC
* *
15194611 AAAACTCCTTCCGAAAAAATTTTAAAAAATC-CTGAACCGCAAAAAGTTTCAAAAATCGTGAGAA
644 AAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAA
* * * *
15194675 ATAGAAAATGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTT
708 ATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTT
* *
15194740 ACAGGCCATAGGAAA-GGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACC
773 ACAAGCCATA-AAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACC
* * * * ** *
15194804 CTATTGAACCATGGCTTGCGCATCTCGTCTCTC-GATCGGCGTAGTGCCTGCCCGCCCGCCCGCC
837 CTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-C
* * * *
15194868 TGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCCGACTGGACCG
1 TGCT-GTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * * * **
15194933 AGGGTTGTGGCAGCAAGATCGGCAGCATGCAGAGGGGGACTCGGCCAATCCTCGGCTTATGCATC
65 AGGGTTGCGGCAGCAAGATTGGTAGCATGCAGAGGGGGACCCGGCCGATCCTCGACTTGCGCATC
* * * * * * * *
15194998 CTGCCCCTCTGGCCGGCTAAGTGCCTGCATGCTCGTTTCGTGGGTTGACTTAGGCATGCGGATTT
130 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTT
* * * *
15195063 CATTCCAAGTCTAAGCATACGGAGTTCATTCCCAGTGTAAGATCGGACTGGACCGAGGGTTGCGA
195 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* * * * * *
15195128 CAGCACATGAC-GGGCTCGGGCAAGGGCTGTTCCCACATTTTTCTTCACCGGGGCACCATCGTCG
260 CAGCACATG-CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCATC-
* * *
15195192 GAGCATCGCCGGAGAACCTGATCGACGGCATTGGGGTTTCGACGAACGGGGGGGCCGAGGGGGTG
323 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTG
** *
15195257 TGCGTACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATGAAA
388 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAA
* *
15195322 CCTCGAGAACTCACACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTATT
453 CCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATT
* * *
15195387 AAAGTGTCTGAAATAGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTA
518 AAAGTATCTGAAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTA
*
15195452 GCTGAATTTTTTTGTGCGTGCCAAACAAAAATACAGGGATCACGTCAACCAAGTTTGGGGCCAAA
583 GCTGAATTTTTTTGTGCATGCC-AACAAAAATACAGGGATCACGTCAACCAAGTTTGGGGCCAAA
*
15195517 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAG
647 ACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAG
* *
15195582 AAAACGAGTCATCTTGCCTTGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
712 AAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * * * *
15195647 GCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCATCCTATC
777 GCCATAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATC
* *
15195712 GATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGT----GCCCGTCCGCCCGC
842 GATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC
* * * **
15195767 T-CAT-TTT-GTCGGTTGGCTTAAGCATATGGAATTCATTCCCAGTCTAAGATTC-GAATGGACC
1 TGC-TGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGACC
15195828 GAGGGTTGCGGCA
64 GAGGGTTGCGGCA
15195841 AAGGGGGACC
Statistics
Matches: 2415, Mismatches: 296, Indels: 134
0.85 0.10 0.05
Matches are distributed among these distances:
892 192 0.08
893 38 0.02
894 34 0.01
895 38 0.02
896 84 0.03
897 83 0.03
898 126 0.05
899 175 0.07
900 73 0.03
901 19 0.01
902 219 0.09
903 346 0.14
904 543 0.22
905 129 0.05
906 26 0.01
907 24 0.01
908 64 0.03
909 202 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (900 bp):
TGCTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGA
GGGTTGCGGCAGCAAGATTGGTAGCATGCAGAGGGGGACCCGGCCGATCCTCGACTTGCGCATCC
CGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC
ATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGC
AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCGGGGCACCATCATCGAG
CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGTGTGC
ACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
GTATCTGAAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAGCT
GAATTTTTTTGTGCATGCCAACAAAAATACAGGGATCACGTCAACCAAGTTTGGGGCCAAAACTC
CTTCCGAAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA
CGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACGTAGAAATATAAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC
Found at i:15195867 original size:22 final size:23
Alignment explanation
Indices: 15195823--15195867 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
15195813 AGATTCGAAT
* *
15195823 GGACCGAGGGTTGCGGCAAAGGG
1 GGACCGAGGCTTGAGGCAAAGGG
*
15195846 GGACCGAGGCTT-AGGCATAGGG
1 GGACCGAGGCTTGAGGCAAAGGG
15195868 TTGGCTTAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.22, C:0.18, G:0.49, T:0.11
Consensus pattern (23 bp):
GGACCGAGGCTTGAGGCAAAGGG
Found at i:15196783 original size:26 final size:26
Alignment explanation
Indices: 15196753--15196803 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15196743 TGACTTAGGT
*
15196753 ATACGGAGTTCGTTCCCAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
15196779 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15196804 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:15197698 original size:26 final size:26
Alignment explanation
Indices: 15197662--15197712 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15197652 TGACTTAGGT
15197662 ATACGAAGTTCATTCCCAGTCTAAGC
1 ATACGAAGTTCATTCCCAGTCTAAGC
* *
15197688 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACGAAGTTCATTCCCAGTCTAAG
15197713 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.24, G:0.18, T:0.29
Consensus pattern (26 bp):
ATACGAAGTTCATTCCCAGTCTAAGC
Found at i:15199455 original size:26 final size:26
Alignment explanation
Indices: 15199426--15199478 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15199416 GTCGACTTAG
* *
15199426 GCATACGGAGTTCATTCCCGGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
15199452 GCATACGGAGTTCATTCACAGTCTAA
1 GCATACGGAGTTCATTCACAGTCTAA
15199478 G
1 G
15199479 ATCAGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCACAGTCTAA
Found at i:15200364 original size:26 final size:25
Alignment explanation
Indices: 15200328--15200379 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
15200318 GTTGACTTAG
15200328 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCA-TCTAA
15200354 GCATACGGAGTTCATTCCCATCTAA
1 GCATACGGAGTTCATTCCCATCTAA
15200379 G
1 G
15200380 ATCGAACTGA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (25 bp):
GCATACGGAGTTCATTCCCATCTAA
Found at i:15200768 original size:900 final size:892
Alignment explanation
Indices: 15195877--15201595 Score: 7098
Period size: 901 Copynumber: 6.4 Consensus size: 892
15195867 GTTGGCTTAG
* * * * **
15195877 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACTGAGCGTTGCGATAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACGA-AC-GAGGGTTACGGCAGCACATGCTGGG
* * ** * * * * *
15195942 CTCGGGCATTTACTGGTGCCATATTTTTCTTCGTCGGTGCACCATCGTCGGAGCATCTTCAGAAA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
15196007 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGTAGGGGCCAGGGGGGTGTGCACACATGATGTG
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * *
15196072 CGGTGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTGTCCCTCATCAAACCTTGAGAACTCAC
192 C-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15196137 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGGTGCCAGTACCCATTAAAGTGTCTGAAAT
256 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15196202 GGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTTGAGTTTTTACCTGAATTTTTTTA
321 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
15196267 TGCAAGCCAACAAAAATACAATGATCACATCTACCAAGTTTGGGGCTAAAAATCCTTCCGAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
*
15196332 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
451 ATTTTAAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
*
15196397 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAACATGGCA
515 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15196462 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTGCG
580 TTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * **
15196527 CATCCCGTCTCTTTGGCCGGCGTAGTGCCCGCACGCCCGCCCGCTTATTTCGTCGGTTGGCTTAG
645 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * ** ** * *
15196592 GCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGTGGTAGCAAGATCAACA
710 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAAGATCGACA
* * * * ** **
15196657 GCACGTAGAGGGGGACCCGCCCGATCCCCGGCTTGCACATCCCACCCTTATGGTTGGCTGAGCGC
775 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCC-CCTGGCCGGCTGAGCGC
* *
15196722 CAGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGGAGTTCGTTCCCAGTCTAA
839 CA-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15196777 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCGGATCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAAC-GAACGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
15196842 CTCAGGCTTGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCAACGCCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15196907 TA-CTAACCGACGGCATTGGGGTTCCGACGATCGAGGGGGCGGGGAGGGGTGTTCGCACATGATG
129 -ACCTGACCGACGGCATTGGGGTTCCGGCGATCG-GGGGGC-CGG-GGGGTGTGCGCACATGATG
* *
15196971 TGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTC
190 TGC-ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15197036 ACACCCCCTTAAAGAGCAGTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
254 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15197101 ATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
319 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
15197166 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAA
384 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * * *
15197231 AAATTTTAAAAAATCCCGGAACAGCAAAATGTGTCAAAAATCATGAAAAATAGAAAATGAGTTGT
449 AAATTTTAAAAAAT-CC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
* *
15197296 CTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACAATT-TATGAATTTACAAGCCATAAAAATG
512 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * **
15197360 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTACTT
577 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
15197425 GCGCATCCCGTCTCTCTGGCCGACATAGTACCCGCCCGCCCGCCCACCCGCCCGCTTGTTTCGTC
642 GCGCATCCCGTCTCTCTGGCCGACGTAGT----GCCCGCCCG----CCCGCCCGCTCGTTTCGTC
* * * ** * * *
15197490 GGTTAGCTTAGGCATACAGAGTTCATTCCCAGTGTAAGATTGGATTGGATCGAGGGTTATGGTAG
699 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAG
* * * * ***
15197555 CAAGATCGACAACACGTAGAGAGGGACCCG-CTCGATCCCCGGCTTGCGCATCCTGTCCTTATGG
764 CAAGATCGACAGCACGCAGAGGGGGACCCGAC-CGATCCCCGGCTTGCGCATCCCG-CCCCCTGG
* * *
15197619 TCGGCTGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGAAGTTCATTCCCAGTCT
827 CCGGCTGAGCGCCA-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
15197684 AA
891 AA
* * * * *
15197686 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATCGAGGGTTACGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAAC-GAACGAGGGTTACGGCAGCACATGCTGGG
* * * * ** * **
15197751 CTTGGGCATGTGTTGGTGTCGCATTTTGCTTCGTCGGGGCACCATCATCGGAGTATCAACGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * *
15197816 ACCTGACTGACGGCATTAGGGTTCCGGTGATCAGGGGGCCGGGGGGTGTGCGCACAGGATGTGCG
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC-
*
15197881 ATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
193 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
15197946 CCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTGGCCGTTAAAGTGTTTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
15198011 GGACACTTTTTTCAAGTGGTCACAAAATCTTGTACGTCTTCGAG-TTTTAGCTGAATTTTTTTGT
323 GGACACTTTTTTCAAATGGTCACAAAATCTTGTAC-ACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * **
15198075 GCATGCCAAAAAAAATACAA-GATCACGTCTA-CAAGTTTGTGGGCCAAAGCTCCTTTTTG-AAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG-GGGCCAAAACTCC-TTCCGAAAA
* * * *
15198137 AA-TTTAAAAAATCCAAACCGTAAAAAGGTTCGAAAATCATGAAAAATAGAAAACGAAGTCGTTT
450 AATTTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACG-AGTCGTCT
* *
15198201 TG-CATGAAA-TTCACGTGAAGGCTTAAGGGGACCATTGTATGAA-TTACAAGCGAT-AAAATGT
514 TGCCATGAAACTTCACGTGAAGGCTTAA-GGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15198262 CATTGGCACACAGAAATATGAAGATGTG-CTAAA-CCACCTACCA-CCTATCGATCCACTGCTTA
578 CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * ** ** *
15198324 TGCAT-CCATCTCTCTAGCCGACGTAGTGCCCGTACGCCCGCCCGCTTATTTCATCGGTTGGCTT
643 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** * * *
15198388 AGGCATACGGAGTTCATTCCCGGTCTAAGGTTGGACTGGACCGAGGGTTACAGCAGCAAGATCGG
708 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAAGATCGA
* * * * *
15198453 CAGCACGTAGAGGGTGACCCGGCCGATCCCCGACTTGCGCATCCTGCCCCTCTGGCCGGCTGAGC
773 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCC-CTGGCCGGCTGAGC
* *
15198518 GCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
837 G-CCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15198575 GCACACGGAGTTCATTACCAGTCTAAGATCGGACTAGACTGAGGGTTACGGCAGCACATG-TCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACGA-AC-GAGGGTTACGGCAGCACATGCT-GG
* * * * * * * * * * *
15198639 GCTCAGGTATGTGCTGGTGCCGTATTTTACTTCGCCAGGACACCATCACCAGAGCATCGCCAGAG
63 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* * *
15198704 AACCTGACCGACGGCATTGGGGTTTCGGCAATCGGGGGGGCCGAGGGGTGT--G--C-------G
128 AACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
15198758 -ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
192 CATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15198822 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15198887 GGGACACTTTTTTCAAATGGTAACAACATCTTGTACACTTCGAGTTTTTAGCTGAATTTGTTTGT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
15198952 GCGTGCCAACAAAAACACAAGGATCACGTC-ACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* ** * *
15199016 TTTTCAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATTGAAAACGAGTCGTCTTG
452 TTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
15199081 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
15199146 TGCCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCTATCGATCCACGACTTGCGC
581 TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
15199211 ATCCCGTCTCTCTGGCCGGCGTA------G--CGCCCGCCCGCTCGTTTCGTCGGATGGCTTAGG
646 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * *
15199268 CATACGAAGTACATTCCCAGTCTAAGATCAAACTGGA-CTGAGGGTTACGGTAGCAGGATCAACA
711 CATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATC-GAGGGTTACGGCAGCAAGATCGACA
* * *
15199332 GCACACAGAGGGTGACCC-AGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAACG
775 GCACGCAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCC-CTGGCCGGCTGAGCG
** * * * *
15199396 CCTGTACGCTCATTTTGTGGGTCGACTTAGGCATACGGAGTTCATTCCCGGTCTAA
838 CC-ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15199452 GCATACGGAGTTCATTCACAGTCTAAGATCAGATCAGACCAAGGGTTACGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATC-GAAC-GAACGAGGGTTACGGCAGCACATGCTGGG
* * * * * *
15199517 CTCGGGCATGTGCTGGTGCCACTTTTTTCTTTGTCGAGGCACCATCGTCGGAGCATCGCCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15199582 ACCTGACCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGAGGTGTGCGCACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* **
15199647 AATGGGTGCCGGTACTTCACCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
193 -ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
15199712 CTCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCAGCAGCCCTTAAAGTGTCCGAAATG
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * * * * * *
15199777 AGGACAAGTTTTTTCCAATGGCCATAAAATCTTGTACACTTCGAGTTTCTAGCTAAATGTTTTTA
322 GGGAC-ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
15199842 TGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTT-GGGCCAAAACTCCTTGCGAAAAA
386 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * *
15199906 ATTTCAAAAATTCTCGAACCGTAAAAAGTTTTCAAAAATCGTGAAAAGT-GAGAAACGAGTCGTC
451 ATTTTAAAAAATC-CGAACCGTAAAAAG-TTTCAAAAATCATGAAAAATAGA-AAACGAGTCGTC
* *
15199970 TTGCCAAGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
513 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
**
15200035 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
578 CATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
15200100 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
643 CGCATCCCGTCTCTCTGGCCGACGTAGTG--C-CCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGG
*
15200165 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTACGGCAGCAAGAT
705 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAAGAT
* * * * * *
15200230 TGGCAGTACGCAGAGGGGGACCCGACCAATCCCCGGCTTGTGCATCTCGCCCCCTGGCCGGCTGA
770 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCCTGGCCGGCTGA
* * *
15200295 GCACCTACACGCTCCTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 GCGCC-ACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
15200354 GCATACGGAGTTCATTCCCA-TCTAAGATCGAACTGAACTGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAAC-GAAC-GAGGGTTACGGCAGCACATGCTGGG
* ** *
15200418 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCAACGGGGCACCATCGCCGGAGCATCGTCGAAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15200483 ACTTGACCGACAGCATTGGGGTTCTGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCA
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCA
** * * *
15200548 TTGGGCACCGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAGCTCACAC
194 -TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15200613 CCCCTTAAAGAGCATTTGAGATCTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
258 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
15200678 GGACACTTTTTTCAAATGGTCACAAAAATCTTGTACATTTCGAGTTTTTGGCTGAATTTTTTTGT
323 GGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15200743 GCATCCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
387 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
*
15200808 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTG
452 TTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
*
15200873 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCAT
516 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
15200938 TGGAACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCAATTGATCCATGGCTTGCGC
581 TGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * *
15201003 CTCCTGTCTCTTTGGCCTG-CGTAGTACCCGCCCGCCCGTCCGCCCGCTCGTTTCATCTGTTGGC
646 ATCCCGTCTCTCTGGCC-GACGTAGT----GCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * *
15201067 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGTA-CTGAGGGTTGCAGCAGCAGGAT
706 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATC-GAGGGTTACGGCAGCAAGAT
** * * * *** *
15201131 CGGTAGCACGCAGAGTGGGACCTGACCGATCCTCGGCTTGCGCATCCCGTCTTTCTGGTCGGCTG
770 CGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCCCTGGCCGGCTG
* * *
15201196 AGCGCC-CGTACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCTCAGTCTAA
834 AGCGCCAC--ACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15201256 G-AT-C-G-G---------A-TC----A--G-AC---CGAGGGTTACGGTAACACATGCTGGGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACGAACGAGGGTTACGGCAGCACATGCTGGGCT
* * *
15201297 CGGGCATGTGCTGGTGCCACATTTTTCTTGGTCGGGGCCCCAT-GCCGGAGCATCGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* * * *
15201361 CTAACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGAGGGGGTGTGCGCACATGATGTGG
131 CTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGG-CCG-GGGGGTGTGCGCACATGATGT-G
* * * * * *
15201426 GATGGGTGCCGATACTTGGCCCTTATATTGGCCGCCAATCCCTCATCAAACCTTGAGAACTCACA
192 CATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
15201491 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATA
257 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15201556 GGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTT
322 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
15201596 TTTTCAAATG
Statistics
Matches: 4206, Mismatches: 512, Indels: 224
0.85 0.10 0.05
Matches are distributed among these distances:
876 56 0.01
877 599 0.14
878 55 0.01
879 226 0.05
880 29 0.01
881 32 0.01
882 7 0.00
883 11 0.00
884 19 0.00
885 18 0.00
886 1 0.00
887 1 0.00
888 8 0.00
889 309 0.07
890 142 0.03
891 122 0.03
892 183 0.04
893 7 0.00
897 19 0.00
898 22 0.01
899 27 0.01
900 543 0.13
901 731 0.17
902 282 0.07
903 141 0.03
904 21 0.00
905 36 0.01
906 215 0.05
907 8 0.00
908 8 0.00
909 326 0.08
910 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (892 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACGAACGAGGGTTACGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCATG
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
AAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
GTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAAGATCGACAGCACGC
AGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCCTGGCCGGCTGAGCGCCACACGC
TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15201594 original size:31 final size:31
Alignment explanation
Indices: 15201559--15201624 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
15201549 TAAAATAGGG
15201559 ACACTTTTTTCAAATGGTCACAAAATTTTGT
1 ACACTTTTTTCAAATGGTCACAAAATTTTGT
15201590 ACACTTTTTTCAAATGGTCACAAAATTTTGT
1 ACACTTTTTTCAAATGGTCACAAAATTTTGT
15201621 ACAC
1 ACAC
15201625 AAAAATATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.39
Consensus pattern (31 bp):
ACACTTTTTTCAAATGGTCACAAAATTTTGT
Found at i:15202759 original size:26 final size:26
Alignment explanation
Indices: 15202729--15202781 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15202719 CTTGACTTAG
15202729 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15202755 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15202781 G
1 G
15202782 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15204139 original size:877 final size:875
Alignment explanation
Indices: 15202754--15204544 Score: 2398
Period size: 877 Copynumber: 2.0 Consensus size: 875
15202744 TCCCAGTCTA
* * *
15202754 AGCATACGGAGTTCATTCCCAGTGTAAGATCGGACCGGACTGAGGGTTACGACAGCACATGCTGG
1 AGCATACGGAGTTCATTCCCAGTATAAGATCGGA-CGAACCGAGGGTTACGACAGCACATGCTGG
* ** * *
15202819 GCTCGGCATGTGCTGCTATCGTATTTTCCTTTCGTCGGGGCACCACCGTCAGAGCATCATCGGAG
65 GCTCGGCATGTGCTGCTATCATATTTTCCTTTCACCGGGGCACCACCGTCAGAGCATCACCAGAG
* * * *
15202884 AACCTAACCGGTGCCATTGGGCTTCCGACGATCAGGGGGGCTGAGGGGGTGTGCACACATGATGT
130 AACCTAACCGATGCCATTGGGCTTCCGACGATCACGGGGCCTGAGGGGGTGTGCACACATCATGT
* * * *
15202949 GTGATGGTTGTTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
15203014 CACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTACCTGCCAGTAGCCATTAAAGTGTCTAAAA
260 CACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTACCTGCCAATAGCCATTAAAGTGTCTAAAA
*
15203079 TGGGGACACTTTTTTCAAATGTTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATATTTTT
325 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATATTTTT
* *
15203144 GTGAATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTCCTTCCGAAAA
390 GTGAATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTACTTCCGAAAA
* * * *
15203209 AATTTTCAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTCAAAAATAGAAAATGAGTCGTCT
455 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTCAAAAATAGAAAACGAGTCGTCT
* *
15203274 GGCCATGAAACTTCACGTGAAGG-TTAAGGGACCGTTGT-TCGAATTTACAAGCCATAAAAATGG
520 GGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT-GAATTTACAAGCCATAAAAATGG
* *
15203337 CAATGGCAC-ATAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGTT
584 CAATGGCACGA-AGAAATAGGAAGATGTGCCTAAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * *
15203400 TGCACATCCCGTCTTTTTGGCTGGCGTAGTGCCC-G-CC-C-G-C-C-CGCTCGTTTTGTTAGTT
648 TGCACATCCCGTCTCTCTAGCCGGCGTAGTGCCCGGCCCGCTGCCGCACGCTCGTTTCGTCAGTT
* * *
15203458 GGCTTAGGCATACGGAGTGCATTCCCAGTCTAAGATCAGACCAGA-TCGAGGGTTAG-GGTAGTA
713 GGCTTAGGCATACGAAGTGCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTT-GTGGCAGCA
* * **
15203521 GGATCGATAGCACGCAGAGGGGGACCTGACCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCTGG
776 GGATCGATAGCACGCAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCCG
* *
15203586 TTGAG-GCGTCCGCACGCTCGATTTCGTGGGTTGACTT
841 CTGAGTGC--CCGCACGCTCG-TTTCATGGGTTGACTT
* * * *
15203623 AGCATACAGAGTTGATTCCCAGTCTAAGATCGGACGAACCGAGGGTTGCGACAGCACATGCTGGG
1 AGCATACGGAGTTCATTCCCAGTATAAGATCGGACGAACCGAGGGTTACGACAGCACATGCTGGG
* * * * * *
15203688 CTCGAGCATGTGCTGGTGTCATATTTT-TTTTCACCGGGGCACCATCGTCGGAGCATCACCCATA
66 CTCG-GCATGTGCTGCTATCATATTTTCCTTTCACCGGGGCACCACCGTCAGAGCATCA-CCAGA
* * **
15203752 GAACCTGACCGATGGCATTGGGCTTCCTGACGATCGACGGGGCC-GTAGGTGGGGTGTGTGCACA
129 GAACCTAACCGATGCCATTGGGCTTCC-GACGATC-ACGGGGCCTG-A-G-GGGGTGTGCACACA
* *
15203816 TCATGT-CGATGGGTGCTGGTACTTGGCTCTTATGTTGG-CCCCTATCCCTCATCAAACCTCAAG
189 TCATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
*
15203879 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT-GCTGTCCAATAGCCATTAAAGT
254 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA-GTTTACCTG-CCAATAGCCATTAAAGT
* **
15203943 GTCTGAAATGGGGACACTTTTTTCAAAATGGTCACAAAATCTTGTAACACTTTTGAGTTTTTTAG
317 GTCTAAAATGGGGACACTTTTTTC-AAATGGTCACAAAATCTTGT-ACAC-TTCAAG-TTTTTAG
* *
15204008 CTGGAAT-TTGTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAA
378 CT-GAATATT-TTTGTGAATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAA
* * *
15204072 ACTACTTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAGGTTTTAAAAATCGTGAAAAATAG
441 ACTACTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTCAAAAATAG
*
15204137 AAAACGAGTCGTCTTGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
506 AAAACGAGTCGTCTGGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAA
* * *
15204202 GCCATAAAAATGGCATTGGCACGACGGAATAGGAAGATGTGCCTAAAACCCACCTACCACCCTAT
571 GCCATAAAAATGGCAATGGCACGAAGAAATAGGAAGATGTGCCTAAAACCCACCTACCACCCTAT
* **
15204267 CGATCCATGGCTTGTGCATCCCGTCTCTCTAGCCGGCGTAGTGCCCGGCCCGCTGCCGCACGCTC
636 CGATCCACGGCTTGCACATCCCGTCTCTCTAGCCGGCGTAGTGCCCGGCCCGCTGCCGCACGCTC
* * * * **
15204332 GTTTCGTCGGTTGGCTTATGCATACGAAGTTCATTCCCAGTCTAAGATCGGGTCAGACTGAGGGT
701 GTTTCGTCAGTTGGCTTAGGCATACGAAGTGCATTCCCAGTCTAAGATCAGACCAGACTGAGGGT
* * ** **
15204397 TGTGGCAGCAGGATCGGTAGCATGTGGAGGGAGACCCGGTCGATCCCCGGCTTGCGCATCCCGCC
766 TGTGGCAGCAGGATCGATAGCACGCAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCC
* *
15204462 CTCTGGCCCGCTGAGTGCCCGCATGCTTGTTTCATGGGTTGACTT
831 CTCTGGCCCGCTGAGTGCCCGCACGCTCGTTTCATGGGTTGACTT
*
15204507 AGGCATACGGAGTTCATTCACAGTATAAGCATACGGAC
1 A-GCATACGGAGTTCATTCCCAGTATAAG-AT-CGGAC
15204545 TTCATTCCCA
Statistics
Matches: 798, Mismatches: 92, Indels: 46
0.85 0.10 0.05
Matches are distributed among these distances:
868 58 0.07
869 76 0.10
870 8 0.01
871 71 0.09
872 71 0.09
873 36 0.05
874 4 0.01
875 4 0.01
876 11 0.01
877 147 0.18
878 62 0.08
879 60 0.08
880 1 0.00
881 2 0.00
882 1 0.00
883 1 0.00
884 17 0.02
885 34 0.04
886 126 0.16
887 8 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (875 bp):
AGCATACGGAGTTCATTCCCAGTATAAGATCGGACGAACCGAGGGTTACGACAGCACATGCTGGG
CTCGGCATGTGCTGCTATCATATTTTCCTTTCACCGGGGCACCACCGTCAGAGCATCACCAGAGA
ACCTAACCGATGCCATTGGGCTTCCGACGATCACGGGGCCTGAGGGGGTGTGCACACATCATGTG
CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
ACCCCCTTAAAGAGCATTTGAGATTTTACAGTTTACCTGCCAATAGCCATTAAAGTGTCTAAAAT
GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATATTTTTG
TGAATGCCAAAAAAAATACAAGGATCACGTCTACCAACTTTGGGGCCAAAACTACTTCCGAAAAA
ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTCAAAAATAGAAAACGAGTCGTCTG
GCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
ATGGCACGAAGAAATAGGAAGATGTGCCTAAAACCCACCTACCACCCTATCGATCCACGGCTTGC
ACATCCCGTCTCTCTAGCCGGCGTAGTGCCCGGCCCGCTGCCGCACGCTCGTTTCGTCAGTTGGC
TTAGGCATACGAAGTGCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATC
GATAGCACGCAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCCGCTGAG
TGCCCGCACGCTCGTTTCATGGGTTGACTT
Found at i:15204728 original size:26 final size:26
Alignment explanation
Indices: 15204692--15204744 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15204682 GGTTGATTAG
15204692 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* **
15204718 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15204744 G
1 G
15204745 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15204748 original size:183 final size:184
Alignment explanation
Indices: 15204351--15204756 Score: 537
Period size: 183 Copynumber: 2.2 Consensus size: 184
15204341 GTTGGCTTAT
* * * * * * *
15204351 GCATACGAAGTTCATTCCCAGTCTAAGATCGGGTCAGACTGAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGACGGTTGTGGCAGCAGGATCGGCA
**** **
15204416 GCATGTGGAGGGAGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCCGCTGAGTGCC
66 GCACACAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCCGCTGAGTGCC
* * *
15204481 CGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTATAA
131 CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCACAGTATAA
* * *
15204535 GCATACGGACTTCATTCCCAGTCCAAGATCAGATCGGACCGACGGTTGTGGTAGCAGGATC-GCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGACGGTTGTGGCAGCAGGATCGGCA
* * *
15204599 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGC
66 GCACACAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCG-CCCTCTGGCCCGCTGAGTGC
* * *
15204664 CCGCACGCTCGTTTCTTGGGTTGA-TTAGGCATACAGAGTTCATTCCCAGTCTAA
130 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCACAGTATAA
** *
15204718 GCATACGGAGTTCATTTTCAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC
15204757 TGAGGGTTAC
Statistics
Matches: 191, Mismatches: 30, Indels: 3
0.85 0.13 0.01
Matches are distributed among these distances:
183 99 0.52
184 92 0.48
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (184 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGACGGTTGTGGCAGCAGGATCGGCA
GCACACAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCCGCTGAGTGCC
CGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCACAGTATAA
Found at i:15205625 original size:25 final size:26
Alignment explanation
Indices: 15205591--15205642 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15205581 GTTGACTTAG
15205591 GCATACGGAG-TCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15205616 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15205642 G
1 G
15205643 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 9 0.36
26 16 0.64
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15207889 original size:15 final size:15
Alignment explanation
Indices: 15207869--15207899 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
15207859 CAACTTTGGG
15207869 GCCAAAACTCCTTTC
1 GCCAAAACTCCTTTC
15207884 GCCAAAACTCCTTTC
1 GCCAAAACTCCTTTC
15207899 G
1 G
15207900 AAAAAATTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.26, C:0.39, G:0.10, T:0.26
Consensus pattern (15 bp):
GCCAAAACTCCTTTC
Found at i:15207905 original size:15 final size:15
Alignment explanation
Indices: 15207872--15207905 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
15207862 CTTTGGGGCC
**
15207872 AAAACTCCTTTCGCC
1 AAAACTCCTTTCGAA
15207887 AAAACTCCTTTCGAA
1 AAAACTCCTTTCGAA
15207902 AAAA
1 AAAA
15207906 TTTTAAAAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.41, C:0.29, G:0.06, T:0.24
Consensus pattern (15 bp):
AAAACTCCTTTCGAA
Found at i:15209289 original size:25 final size:26
Alignment explanation
Indices: 15209244--15209295 Score: 81
Period size: 25 Copynumber: 2.0 Consensus size: 26
15209234 GTTGACTTAG
15209244 GCATACAGAATTCATTCCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
15209270 GCATA-AGAAGTTCATT-CCAGTCTAA
1 GCATACAGAA-TTCATTCCCAGTCTAA
15209295 G
1 G
15209296 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
25 14 0.56
26 11 0.44
ACGTcount: A:0.35, C:0.23, G:0.15, T:0.27
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:15211163 original size:166 final size:166
Alignment explanation
Indices: 15210905--15211205 Score: 417
Period size: 166 Copynumber: 1.8 Consensus size: 166
15210895 CCGAGGGTTG
* * * * * **
15210905 CGGCAACAGGATCGGCAGCACGCAGAGGGGGACCCGACTGATCCCCGGCTTGCGTATCTTGCCCT
1 CGGCAACAGGATCGACAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCT
* **
15210970 TCTGGTCGGCTGAGCACCCGCACGCTCGTTTTGTGGGTTGAC-TTAGGCATATGAAGTTCATTCC
66 TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTTA-GCATATGAAGTTCATTCC
15211034 CAGTCTGAGATCGGATCGATGGTTGTGGCAGTAGGAT
130 CAGTCTGAGATCGGATCGATGGTTGTGGCAGTAGGAT
* *
15211071 CGGCAGCAGGATCGACAGCACGCAGAGAGGGACCTGACCGATCCCCGGCTTACGCATCCCG-CCT
1 CGGCAACAGGATCGACAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCT
* ** * *
15211135 CTCTGGCCGGTTGAGCACTTGTACGCTCGTTTCATGGGTTGACTTTAGCATATGGAGTTCATTCC
66 -TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTTAGCATATGAAGTTCATTCC
15211200 CAGTCT
130 CAGTCT
15211206 AAGCATACAG
Statistics
Matches: 116, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
165 3 0.03
166 110 0.95
167 3 0.03
ACGTcount: A:0.18, C:0.28, G:0.30, T:0.24
Consensus pattern (166 bp):
CGGCAACAGGATCGACAGCACGCAGAGAGGGACCCGACCGATCCCCGGCTTACGCATCCCGCCCT
TCTGGCCGGCTGAGCACCCGCACGCTCGTTTCATGGGTTGACTTTAGCATATGAAGTTCATTCCC
AGTCTGAGATCGGATCGATGGTTGTGGCAGTAGGAT
Found at i:15212042 original size:26 final size:26
Alignment explanation
Indices: 15212008--15212057 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15211998 TGACTTAGGG
*
15212008 ATACGGAGTTCATTCCCAGTCTAAAC
1 ATACAGAGTTCATTCCCAGTCTAAAC
*
15212034 ATACAGAGTTGATTCCCAGTCTAA
1 ATACAGAGTTCATTCCCAGTCTAA
15212058 GATCAGACCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.28
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAAC
Found at i:15214266 original size:185 final size:185
Alignment explanation
Indices: 15213954--15214327 Score: 543
Period size: 185 Copynumber: 2.0 Consensus size: 185
15213944 TCAATTGGCT
* * *
15213954 TAAGCATACGAAGTTCATTTCCAGTCTAAGATCGGACCAAATTGAGGGTTGTGGCAGCAAGACCG
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGTGGCAACAAGACCG
* *
15214019 ACAGCACGCAGAGGGGGACCCAATCGATCCCCGACTTGCGCATCCCGCCCCTCTAGCCGGTTGAG
66 ACAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCACCCCTCTAGCCGGTTGAG
* *
15214084 TGCCCGCATGCTCGTTTCGTCGGTTGGCTTAGGCACACGGAGTTCATTCCAAGTC
131 CGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCACACGGAGTTCATTCCAAGTC
* ** *
15214139 TAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGTGGCAACAGGACCG
1 TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGTGGCAACAAGACCG
* * * * *
15214204 GCAGCACGCAGATGGGGACCCAGCCGATCCCCTG-CTTGCGCATCTCACCCCTCTGGCCGGTTGA
66 ACAGCACGCAGAGGGGGACCCAACCGATCCCC-GACTTGCGCATCCCACCCCTCTAGCCGGTTGA
* * * **
15214268 GCGCCCGCACGCTCGTTTCGTGGGTTGGCTTAGGTATACGGAGTTCATTCCCGGTC
130 GCGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCACACGGAGTTCATTCCAAGTC
15214324 TAAG
1 TAAG
15214328 AATGGACCAA
Statistics
Matches: 167, Mismatches: 21, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
185 166 0.99
186 1 0.01
ACGTcount: A:0.20, C:0.29, G:0.29, T:0.22
Consensus pattern (185 bp):
TAAGCATACGAAGTTCATTCCCAGTCTAAGATCGGACCAAATCGAGGGTTGTGGCAACAAGACCG
ACAGCACGCAGAGGGGGACCCAACCGATCCCCGACTTGCGCATCCCACCCCTCTAGCCGGTTGAG
CGCCCGCACGCTCGTTTCGTCGGTTGGCTTAGGCACACGGAGTTCATTCCAAGTC
Found at i:15215325 original size:185 final size:185
Alignment explanation
Indices: 15215007--15215369 Score: 530
Period size: 185 Copynumber: 2.0 Consensus size: 185
15214997 AGGCATACGG
* * * *
15215007 AGTTCATTCCCAGTCGAAGATCAGATCGGATTGAAGGTTGTGACAGCAGGATCGGTAGCACACAG
1 AGTTCATTCCCAGTCGAAGATCAAATCGAATGGAAGGTTGCGACAGCAGGATCGGTAGCACACAG
** * *
15215072 AGCGGGACCCAGTCGATCCCCGGCTTGCGCATCTTGCCCCTCTGGCCGGCTGAGCACCCACACGC
66 AGCGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCACTGGCCGGCTGAGCAACCACACGC
* *
15215137 TCGTGTCGTGGGTTGACATAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAA
131 TCGTGTCGTGGGTTAACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAA
* *
15215192 AGTTCATTCCCAGTCTAAGATCAAATCGAATGGAAGGTTGCGACAGTAGGATCGGTAGCACACAG
1 AGTTCATTCCCAGTCGAAGATCAAATCGAATGGAAGGTTGCGACAGCAGGATCGGTAGCACACAG
* ** * * *
15215257 AGGGGGACCC-GATTTATCCCCGGCTTGTGCATCCCGCCCCACTGGCCGGCTGAGCAACCGCGCG
66 AGCGGGACCCAG-TCGATCCCCGGCTTGCGCATCCCGCCCCACTGGCCGGCTGAGCAACCACACG
* *
15215321 CTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
130 CTCGTGTCGTGGGTTAACATAGGCATACGGAGTTCATTCCCAGTCTAAG
15215370 ATCAAATCGG
Statistics
Matches: 157, Mismatches: 20, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
184 1 0.01
185 156 0.99
ACGTcount: A:0.23, C:0.28, G:0.28, T:0.22
Consensus pattern (185 bp):
AGTTCATTCCCAGTCGAAGATCAAATCGAATGGAAGGTTGCGACAGCAGGATCGGTAGCACACAG
AGCGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCACTGGCCGGCTGAGCAACCACACGC
TCGTGTCGTGGGTTAACATAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAA
Found at i:15216225 original size:26 final size:25
Alignment explanation
Indices: 15216188--15216266 Score: 122
Period size: 26 Copynumber: 3.0 Consensus size: 25
15216178 GTTGACTTAG
15216188 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
*
15216214 GCATACGTAGTTCATTCCTAGTCTAA
1 GCATACG-AGTTCATTCCCAGTCTAA
15216240 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATAC-GAGTTCATTCCCAGTCTAA
15216266 G
1 G
15216267 ATTAGATCGG
Statistics
Matches: 49, Mismatches: 2, Indels: 4
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.02
26 47 0.96
27 1 0.02
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.29
Consensus pattern (25 bp):
GCATACGAGTTCATTCCCAGTCTAA
Found at i:15217148 original size:26 final size:26
Alignment explanation
Indices: 15217109--15217161 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15217099 GTTGACTTAG
15217109 GCATACGAAATTCATACCCAGCCTAA
1 GCATACGAAATTCATACCCAGCCTAA
* * * *
15217135 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAATTCATACCCAGCCTAA
15217161 G
1 G
15217162 ATCGGACTAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (26 bp):
GCATACGAAATTCATACCCAGCCTAA
Found at i:15218152 original size:171 final size:171
Alignment explanation
Indices: 15217837--15218154 Score: 415
Period size: 171 Copynumber: 1.9 Consensus size: 171
15217827 GCTCGTTTCG
* * * *
15217837 TCGGTTAGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGAATGAGGGTTGCGGC
1 TCGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGACTAGACCAGAATGAGGGTTACAGC
* * * **
15217902 TGCAAGATCGGCAGCACCCAGAGGGGGACCCAACCAATCCCCGGCTTGCGCATCCTGCCCTCCTG
66 AGCAAGATCGGCAGCACACAGAGGGGGACCCAACCAATCCCCGACTTGCGCATCCACCCCTCCTG
15217967 ACCGGTGTAGTGCCCGCCCGTCTATCCGCCCTCTCATGTCA
131 ACCGGTGTAGTGCCCGCCCGTCTATCCGCCCTCTCATGTCA
* * ** *
15218008 TCGGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGACTGGACTGGATTGAGGGTTACAGC
1 TCGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGACTAGACCAGAATGAGGGTTACAGC
* * * * * *
15218073 AGTAGGATCGGCAGCACATAGAGGGGGACCCGACCGATCCTCGACTTGCGCATCCCACCCCT-CT
66 AGCAAGATCGGCAGCACACAGAGGGGGACCCAACCAATCCCCGACTTGCGCAT-CCACCCCTCCT
*
15218137 GGCCGGCTG-AGTGCCCGC
130 GACCGG-TGTAGTGCCCGC
15218155 ACGCTCGTTT
Statistics
Matches: 124, Mismatches: 21, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
171 116 0.94
172 8 0.06
ACGTcount: A:0.20, C:0.31, G:0.28, T:0.21
Consensus pattern (171 bp):
TCGGTTAGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGACTAGACCAGAATGAGGGTTACAGC
AGCAAGATCGGCAGCACACAGAGGGGGACCCAACCAATCCCCGACTTGCGCATCCACCCCTCCTG
ACCGGTGTAGTGCCCGCCCGTCTATCCGCCCTCTCATGTCA
Found at i:15218349 original size:185 final size:185
Alignment explanation
Indices: 15218028--15218426 Score: 568
Period size: 185 Copynumber: 2.2 Consensus size: 185
15218018 TAGGCATACG
* * *
15218028 AAGTTCATTCCCAGTCTAAGA-CTGGACTGGATTGAGGGTTACAGCAGTAGGATCGGCAGCACAT
1 AAGTTCATTCCCAGTCTAAGATC-GGACCGGATTGAGGGCTACAGCAGTAGGATCAGCAGCACAT
* *
15218092 AGAGGGGGACCCGACCGATCCTCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGTGCCCGCAC
65 AGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCAC
* * * * **
15218157 GCTCGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTACCAGTCTAAGCAAATG
130 ACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATGACCAGTCTAAGCAAACA
* * * * * **
15218213 GAGTTCTTTCCCAGTCTAAGATCAGACCGGATTGAGGGCTACGGCAGTAGGATCAGTAGCATGTA
1 AAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGCTACAGCAGTAGGATCAGCAGCACATA
* *
15218278 GAGGGGGACCCGACCGATCCCC-AGCTTGCGCATCTCACCCCTCTGGCCGGCTGAGCGCCCGTAC
66 GAGGGGGACCCGACCGATCCCCGA-CTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCAC
* *
15218342 ACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATGCCCAGTCTAAGCATACA
130 ACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATGACCAGTCTAAGCAAACA
15218398 AAGTTCATTCCCAGTCTAAGATCGGACCG
1 AAGTTCATTCCCAGTCTAAGATCGGACCG
15218427 AACCGAGGGT
Statistics
Matches: 187, Mismatches: 25, Indels: 4
0.87 0.12 0.02
Matches are distributed among these distances:
184 1 0.01
185 185 0.99
186 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.27, T:0.23
Consensus pattern (185 bp):
AAGTTCATTCCCAGTCTAAGATCGGACCGGATTGAGGGCTACAGCAGTAGGATCAGCAGCACATA
GAGGGGGACCCGACCGATCCCCGACTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCACA
CTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATGACCAGTCTAAGCAAACA
Found at i:15218394 original size:26 final size:26
Alignment explanation
Indices: 15218365--15218417 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15218355 GTTGACTTAG
*
15218365 GCATACAGAGTTCATGCCCAGTCTAA
1 GCATACAAAGTTCATGCCCAGTCTAA
*
15218391 GCATACAAAGTTCATTCCCAGTCTAA
1 GCATACAAAGTTCATGCCCAGTCTAA
15218417 G
1 G
15218418 ATCGGACCGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAAAGTTCATGCCCAGTCTAA
Found at i:15220015 original size:26 final size:26
Alignment explanation
Indices: 15219979--15220028 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15219969 CATTTAGGCA
15219979 TACGGAGTTCATTCCCAGTCTAAGCT
1 TACGGAGTTCATTCCCAGTCTAAGCT
15220005 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15220029 ATCATACCGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCT
Found at i:15220897 original size:26 final size:26
Alignment explanation
Indices: 15220868--15220923 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15220858 TGGGTTGACT
* *
15220868 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGAAGTTAATTCCCAGTC
15220894 TAAGCATACGAAGTTAATTCCCAGTC
1 TAAGCATACGAAGTTAATTCCCAGTC
15220920 TAAG
1 TAAG
15220924 ATCGTATCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (26 bp):
TAAGCATACGAAGTTAATTCCCAGTC
Found at i:15224069 original size:899 final size:893
Alignment explanation
Indices: 15219299--15224516 Score: 6239
Period size: 904 Copynumber: 5.8 Consensus size: 893
15219289 CCCTTATATT
* * *
15219299 GGTGCTGGTACTTGGCCCTTATATTGGCCCTCTATCCCTCATCAAACCTCCAGAACTCGCA-CCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
15219363 CTTAAAGAGCATTTGAGATTTCACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGA
* * * * *
15219428 CATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGATTTTTTTTATGTAT
130 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
* * * * *
15219493 ACCAAAAAAAATACACGGATGACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAAATTT
195 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGG-CAAAACTCCTTTCGAAAAAATTTT
* * * * *
15219558 AAAAAATCCCGAACCGTAAAAGGTTTCGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCAT
259 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA-AAAACGAGTCGTCTTGCCAT
15219623 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
323 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
* * * *
15219688 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCTACGACTTACGCATCC
388 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * * **
15219753 CATTTCTCTAGCCGACGTAGTGCTCACCTGCCCGCCCGCCCGCTTGTTTTGTC-GATTGGCTTAG
453 CGTCTCTCTGGCCGGCGTAGTG--C-CC-GCCCGCCCGTCCGCTCGTTTCATCAG-TTGGCTTAG
* * * * * * * * * *
15219817 GTATATGGAGTTCATTCCCATTCTAAGATCGGACCGGACTAAGGGTTGCAGTAGCAGGATTGGCA
513 GCATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGGCTGAGGGTTACGGTAGCAGGATCGGCA
* ** * * * * ** * * *
15219882 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCACCCCTTTTACCGGCTAACTAC
578 GCACACAGAGATGGACCCGACCGATCCCCGAC-TGTGCATCCCGCCCCTCTGGCCAGCTGAGT-C
* * * *
15219947 CCGCACGC-CTGTTTCGTGGGTTCATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCTTACGGA
641 CCGCACACTC-GTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGA
** * *
15220011 GTTCATTCCCAGTCTAAGATCATACC-GAACTGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCA
704 GTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
*** * ***
15220075 TGTGTTGGTGCCGCATTTTTCTTCGTTGGGGCAGCATTTTCGGAGCATCGTCGGAGAACCTGACC
768 TGTGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA--
* * * * * * *
15220140 CG-CGGTATTGGGGTTCCGGTGAT--TGGGGACCGGGGGGGCAGTGTGCGCACATGATGTGCGAT
831 CGATGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GAGGGG--GTGTGCGCACATGATGTGCGAA
15220202 G
893 G
* * * * *
15220203 GGTGCTGGTACTTGGCCCTTATCTTGGCCCTCTATCCCTCATCAAACCTCCATAACTCGCA-CCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
15220267 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGA
* * * * * *
15220332 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAATTCTAAGCTGAATTCTTTTGTGCAT
130 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
* * * * * * *
15220397 GCCGACAAAAATACAGGGATGACATCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAAATTTT
195 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGGC-AAAACTCCTTTCGAAAAAATTTT
* * * * * * *
15220462 AAAAAATCCCAAATCGTAAAAGGTTTCGAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCAT
259 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA-AAAACGAGTCGTCTTGCCAT
* *
15220527 GAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATAGCATTGGC
323 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
*** *
15220592 ATATAGAAATATGAAGATGTG-CTAAACCCACCTACCACCCTATCGATCGACGGCTTGCGCATCC
388 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
15220656 CGTCTCTCTGGTCGGCGTACTGCCCGCCCG--C--CCGCTCGTTTCGTCGGTTGGCTTAGGCATA
453 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCAGTTGGCTTAGGCATA
* * * ** * *
15220717 CGGAGTTCAATT-CCAGTCTAAGATCGGACCGGACTGAGGGTTGTGGCAGCAGGATCGGAAGCAC
518 CGGAGTTC-ATTCCCAGTCTAGGATCAGACCGGGCTGAGGGTTACGGTAGCAGGATCGGCAGCAC
* ** * * *
15220781 GCAGAGGGGGACCCGACCGATCCCC-AGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCG
582 ACAGAGATGGACCCGACCGATCCCCGA-C-TGTGCATCCCGCCCCTCTGGCCAGCTGAG-TCCCG
** * * * *
15220845 CACGGTTGTTTCGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTA
644 CACACTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTC
* * * * * *
15220910 ATTCCCAGTCTAAGATCGTATCGGACCAAGGGTTGCGGCAGCACATGCTGGGCTTGGGCATGTGC
708 ATTCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGT
* * * * **
15220975 TGGTGCCGTATTTTTCTT-------------T-GTCGGAGCATCATCGGAGAACTTGACCGGCGG
773 TGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA-CGATGG
* * *
15221026 CATTGGGGTTCCGGCGAT-TGGGGGGCCGGGGGTGGTGTGCGCACATGATGTGCGATG
837 CATTGGGGTTCCGGCGATCGGGGGGGCCGAGGG-GGTGTGCGCACATGATGTGCGAAG
* *
15221083 GGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
15221148 CTTAAAAAGCATTTGAGATTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGA
* * * *
15221213 CACTTGTTTCAAATGGTCACAAAATCTGGTACACTTCGAGTTTTTAGCTGAATGTTTTTGTGCAT
130 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
* * * * * * *
15221278 GCCAACAAAAATACAAGGATCACGTCTAGCAAATTTGGGGCCAAAACTCCATCCAAAAAAATTTT
195 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGG-CAAAACTCCTTTCGAAAAAATTTT
* ** *
15221343 AAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCAT
259 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA-AAAACGAGTCGTCTTGCCAT
*
15221408 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
323 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
* * * **
15221473 ACACAGAAATATGAAGATGTGCCTAAACCCACTTACCACTCTATCGATCCACGATTTGCGCATCC
388 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
15221538 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCACTCATTTCGTCGGTTGGCTTAGGCATA
453 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCAGTTGGCTTAGGCATA
* * * * * ** * ** **
15221603 TGGAGTTCATTCCCAGTCTAAGACCATACCGGACTGAGGGTTGTGGCAGCAGGATCAACAGCATG
518 CGGAGTTCATTCCCAGTCTAGGATCAGACCGGGCTGAGGGTTACGGTAGCAGGATCGGCAGCACA
* ** * * * * * * * *
15221668 TAGAGGGGGACCCGACCGATCCCCGGCATGCGTATCGCG-CCCTTTGGCCGGTTGAGCGCCCGCA
583 CAGAGATGGACCCGACCGATCCCCGAC-TGTGCATCCCGCCCCTCTGGCCAGCTGAG-TCCCGCA
* *
15221732 CGCTCGTTTCAT-GG--G---T-----T--GA---C-TT---AG-----GCATACGGAGTTCATT
646 CACTCGTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT
* * * *
15221772 CCCATTCTAAGATCGGACCGCATCGAGGGTTACGGCAGCACAAGCTGGGCTCGGGCATGTGTTGG
711 CCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGG
*
15221837 TGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTC-GAGAACCTGACCGGTGGCAT
776 TGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA-CGATGGCAT
* *
15221901 TGGGGTTCCGGCGATCGAGGGGGCCAGAGGGGGTGTGCGCACATGATGTGC-AATA
840 TGGGGTTCCGGCGATCGGGGGGGCC-GAGGGGGTGTGCGCACATGATGTGCGAA-G
* * *
15221956 GGTGCTGGTCCTTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCT
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* **
15222021 CTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGTTAGTAGCCATTAAAGTGTCTAGAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTA-AATGGGGA
15222086 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTTTTTATGCAT
130 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
* * * * *
15222150 GCCAAAAAAAAATACAAGGATCACATCTATCGAGTTTGTTGTAAAACTCCTTTCGAAAAAATTTT
195 GCC-AAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCAAAACTCCTTTCGAAAAAATTTT
* * * * * *
15222215 AAAAAATCCCGAACCCCAAAAAGATTCAAAAATCATGAGAAATAAAAAACGAGTCGTCTTGCCTT
259 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT-AAAAACGAGTCGTCTTGCCAT
* *
15222280 GAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGGCATTGGC
323 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
* * * * *
15222345 ACGCAGAAATATGAAAACGTGCCTAGACCCACCTACCACCTTATCGATCCACGGCTTGCACATCC
388 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** *
15222410 CGACTCTCTGGCCGGCGTAGTGCCCGCCCACCCGCCTGCCCGCTCGTTTTGTCGGTTGGCTTAGG
453 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG--T--CCGCTCGTTTCATCAGTTGGCTTAGG
*** * *
15222475 CATACGGAGTTCATTCCCAGTCTAGGATTTCACCGGGCTGAGGGTTGCGGTAGCAGGATCGACAG
514 CATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGGCTGAGGGTTACGGTAGCAGGATCGGCAG
* * * * * *
15222540 CACACAGAGATGGACTCGATCGATCCTCGACTTTCGCATCCTGCCCCTCTGGCCAGCTGAGCTCT
579 CACACAGAGATGGACCCGACCGATCCCCGACTGT-GCATCCCGCCCCTCTGGCCAGCTGAG-TCC
* * * *
15222605 TGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTAATTCCCAGTCTAAGTATACGGAGT
642 CGCACACTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGT
* *
15222670 TCATTCCCAGTCAAAGATCGGACCAGG-CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
706 TCATTCCCAGTCTAAGATCGGACC-GGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATG
* *
15222734 TGTTGGTGCCGCATTTTTCTTCCCCGGGGCACCATCACCGGAGCATCGTCGGAGAACCTGACAGA
770 TGTTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGAC-GA
* * * *
15222799 TGGCACTGGGGTTCCGGTGATCGGGGGGGCCGAGGGTGGTATGCGCACATGATGTGCGATG
834 TGGCATTGGGGTTCCGGCGATCGGGGGGGCCGAGGG-GGTGTGCGCACATGATGTGCGAAG
* * *
15222860 GGTGCTGATACTTGGCCCTTACATTGGCCCCCTGTCCCTCATCAAACCTCGAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
15222925 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGA
*
15222990 CACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
130 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
* * * *
15223055 GCCAATAAAAATAAAAGGATCACGTCTACCAAG-TTGGGGCAAAAACTCCTTTCGAAGAAATTTT
195 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGGC-AAAACTCCTTTCGAAAAAATTTT
* *
15223119 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATATAAACGAGTCGTCTTGCCATG
259 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAACGAGTCGTCTTGCCATG
15223184 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCA
324 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCA
* * * *
15223249 TGCAGAAATATGAAGATGTGCCTAAACCCACCTTCCCCCCTATCGATCCACGGCTTGCGCATCCA
389 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
15223314 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCTGCTGGTTTCATCAGTTGGCTTAGGCATAT
454 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCAGTTGGCTTAGGCATAC
* * * * *
15223379 GGAGTTCATTCCCAGTCGAGGATCAGACTGGGCTGAGGGTTACGGTAACAGGATCGGCAGCATAT
519 GGAGTTCATTCCCAGTCTAGGATCAGACCGGGCTGAGGGTTACGGTAGCAGGATCGGCAGCACAC
* *
15223444 AGAGATGGACCCGGCCGATCCCCGACTCGTGCATCCCGCCCCTCTGGGC-GACTGAGTGCCCGCA
584 AGAGATGGACCCGACCGATCCCCGACT-GTGCATCCCGCCCCTCTGGCCAG-CTGAGT-CCCGCA
* * *
15223508 CACTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAATATAAGCATATGGAGTTCAT
646 CACTCGTTTCGTGGGTTGACTTAGGCATAC-GAGTTCATTCCCAGTCTAAGCATACGGAGTTCAT
* * * * * *
15223573 TCCCAGTGTAAGATTGGATCGGATCGAGGGTTGCGACAGCACATGCTAGGCTCGGGCATGTGCTG
710 TCCCAGTCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTG
* * * *
15223638 GTGCTGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCTTCGTCGGAGAACCTGATCGACGGCA
775 GTGCCGCATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGA-CGATGGCA
* *
15223703 TTGGGGTTCCGGCGATTGGGGGGGCCG-GGGGGTGTGCACACATGATGTGCGAAG
839 TTGGGGTTCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGAAG
* *
15223757 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACTCACACCCC
1 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
15223822 CTTAAAGAGCATTTGAGATTGTACAGGTTTGCTGCCAGAAGCCATTAAAGTGTCTGAAATGGGGA
66 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATGGGGA
* * * * *
15223887 CACTTTTTTCAAATGGTCACAAAATCTTTTACGCTGCGAGTTTTAAGCTGAATTTTTTTGTGCAT
130 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAT
* *
15223952 GACAAAAAAAATACAAGAATCACGTCTACCAAGTTTGATGGCAAAACTCCTTTCGAAAAAATTTT
195 GCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTG-TGGCAAAACTCCTTTCGAAAAAATTTT
* *
15224017 AAAAAATCTCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTTCCAT
259 AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATA-AAAACGAGTCGTCTTGCCAT
* * * *
15224082 GAAACTTCATGTGAAGGATTAAGGGACCATTGTATGAATTTACAACCCATTAAAATGGCATTGGC
323 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGC
** * * *
15224147 ACATAGAAATATGAAGATGTGCCTAAACCCACCTACCATCCTATTGATACACGGCTTGCGCATCC
388 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * ** * *
15224212 CGTCTCTCTAGCCGACGTAGTGCCCACCCGCCCGCCCACCCGCTCATTTCATCAGTTGGCTTTGG
453 CGTCTCTCTGGCCGGCGTAGTG----CCCGCCCGCCCGTCCGCTCGTTTCATCAGTTGGCTTAGG
* * * * * * * * * *
15224277 TAGACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTACGATAGCAGGATCAGTAG
514 CATACGGAGTTCATTCCCAGTCTAGGATCAGACCGGGCTGAGGGTTACGGTAGCAGGATCGGCAG
* * * * *
15224342 CACACAGA-AGGGGACCCGACCGGTCCCCGGCTTGCGCATCCCGCCCCTCTGGCCAGCTGAGCAC
579 CACACAGAGA-TGGACCCGACCGATCCCCGAC-TGTGCATCCCGCCCCTCTGGCCAGCTGAG-TC
* *
15224406 CCGCACGA-TCATTTTGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGA
641 CCGCAC-ACTCGTTTCGTGGGTTGACTTAGGCATACG-AGTTCATTCCCAGTCTAAGCATACGGA
** **
15224470 GTTCATTCCCAGTCTAAGATTAGACCGGA-CTGAATGTTGCGGCAGCA
704 GTTCATTCCCAGTCTAAGATCGGACCGGATC-GAGGGTTGCGGCAGCA
15224517 GGATCGACAA
Statistics
Matches: 3783, Mismatches: 433, Indels: 197
0.86 0.10 0.04
Matches are distributed among these distances:
859 83 0.02
864 2 0.00
867 2 0.00
868 1 0.00
871 2 0.00
872 278 0.07
873 236 0.06
874 6 0.00
875 1 0.00
876 105 0.03
877 30 0.01
878 2 0.00
879 1 0.00
880 81 0.02
881 362 0.10
882 76 0.02
883 1 0.00
884 3 0.00
885 35 0.01
886 114 0.03
888 1 0.00
891 2 0.00
895 260 0.07
896 7 0.00
897 232 0.06
898 76 0.02
899 485 0.13
900 4 0.00
901 2 0.00
902 3 0.00
903 577 0.15
904 694 0.18
905 19 0.01
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (893 bp):
GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATGGGGAC
ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATG
CCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCAAAACTCCTTTCGAAAAAATTTTAA
AAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAACGAGTCGTCTTGCCATGAA
ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAACCATAAAAATGGCATTGGCACG
CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGTCCGCTCGTTTCATCAGTTGGCTTAGGCATACGG
AGTTCATTCCCAGTCTAGGATCAGACCGGGCTGAGGGTTACGGTAGCAGGATCGGCAGCACACAG
AGATGGACCCGACCGATCCCCGACTGTGCATCCCGCCCCTCTGGCCAGCTGAGTCCCGCACACTC
GTTTCGTGGGTTGACTTAGGCATACGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG
TCTAAGATCGGACCGGATCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGTTGGTGCCG
CATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACGATGGCATTGGGGT
TCCGGCGATCGGGGGGGCCGAGGGGGTGTGCGCACATGATGTGCGAAG
Found at i:15224464 original size:26 final size:26
Alignment explanation
Indices: 15224435--15224487 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15224425 GTTGACTTAG
15224435 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15224461 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15224487 G
1 G
15224488 ATTAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15224649 original size:26 final size:26
Alignment explanation
Indices: 15224619--15224671 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15224609 GTTGACTTAG
* **
15224619 GCATATGGAGTTCATTCGTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15224645 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15224671 G
1 G
15224672 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15225664 original size:159 final size:158
Alignment explanation
Indices: 15225350--15225704 Score: 415
Period size: 159 Copynumber: 2.2 Consensus size: 158
15225340 TCGTTTCACC
* * * *
15225350 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGCCTAAGATCGAACCGAAAGAGGGTTGCAGCAGC
1 GGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCGAACCGAAAGAGGATTGCAGCAGC
* * * * **
15225415 AGGATCGGCAGCACACAGAGGGGGACCTGGCCGATCCACGGCTTGCGCATCCCGCCCCTCTGCCC
66 AGGATCGACAGCACACAAAGGGGGACCCGACCGATCCACAACTTGCGCATCCCGCCCCTCTGCCC
* * * * * *
15225480 GGCTGTGCACCCGTATGCTCGTTTCGTG
131 GACTGAGCACACGCACGCTCATTTCGTG
* * ** *
15225508 GGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCGGACCGAGGATTGCGGCAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCGAACC-GAAAGAGGATTGCAGCAG
* * ** * * *
15225573 TAGGATCGATAGCATGCAAAGGGGGACCCGATCGATCCCCAACTTGCGCATCCCGCCCCTCTGGC
65 CAGGATCGACAGCACACAAAGGGGGACCCGACCGATCCACAACTTGCGCATCCCGCCCCTCTGCC
*
15225638 CGACTGAGCGCACGCACGCTCATTTCGTG
130 CGACTGAGCACACGCACGCTCATTTCGTG
*
15225667 GGTTGACTTAGGCATACAGAGTTCATT-CCTAGTCTAAG
1 GGTTGACTTAGGCATACGGAGTTCATTCCCT-GTCTAAG
15225705 CATATGGTGT
Statistics
Matches: 165, Mismatches: 30, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
158 44 0.27
159 121 0.73
ACGTcount: A:0.21, C:0.29, G:0.29, T:0.21
Consensus pattern (158 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGATCGAACCGAAAGAGGATTGCAGCAGC
AGGATCGACAGCACACAAAGGGGGACCCGACCGATCCACAACTTGCGCATCCCGCCCCTCTGCCC
GACTGAGCACACGCACGCTCATTTCGTG
Done.