Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 79 of 195
Found at i:15226614 original size:26 final size:26
Alignment explanation
Indices: 15226584--15226633 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15226574 GACTTAGGCA
15226584 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAGTCTAAGCG
15226610 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAGTCTAAG
15226634 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGCG
Found at i:15228399 original size:26 final size:26
Alignment explanation
Indices: 15228370--15228422 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15228360 GTTGACTTAG
*
15228370 GCATACAGATTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* * *
15228396 GCATACGGAGTTCATTCTCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15228422 G
1 G
15228423 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15228916 original size:901 final size:902
Alignment explanation
Indices: 15225495--15229157 Score: 5003
Period size: 903 Copynumber: 4.1 Consensus size: 902
15225485 TGCACCCGTA
* * * **
15225495 TGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCTGTCTAAGATTGGACCGGACCG
1 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * * ** * *
15225560 AGGATTGCGGCAGTAGGATCGATAGCATGCAAAGGGGGACCCGATCGATCCCCAACTTGCGCATC
66 AGGGTTGCGGCAGCAAGATCGGTAGCATGCAGAGGGGGACCCGGCCGATCCTCGACTTGCGCATC
* * *
15225625 CCGCCCCTCTGGCCGACTGAGCGCACGCACGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTT
131 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTT
* * * ** *
15225690 CATTCCTAGTCTAAGCATATGGTGTTCATTCCCAGTCTAAGATCAAACTGGACCGAGGGTTGCGG
196 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* * * *
15225755 CAGCACATGCTAGGCTTGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCATCGA
261 CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGA
* * * *
15225820 CGCATCGCCGGAGAACTTGATCGGTC-GCATTAGGGTTCCGACGATCGGGGGGGCC-GGGGGGTA
326 -GCATCGCCGGAGAACCTGA-CCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
*
15225883 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCACATCAA
389 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAA
* * *
15225948 ATCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCGT
454 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* *
15226012 TAAAGTATCTGAAATGGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCAAGTTTTT
519 TAAAGTATCTGAAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTT
* * * *
15226077 AGCTGAATTTTTTTGTGCGTGCCAACCAAAAATACAGGGATCACGTCCACCAAGTTTGGGGCCAA
584 AGCTGAATTTTTTTGTGCATGCCAA-CAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAA
* * *
15226142 AACTCCTTCCGAAAAAATTTTAAAAAAT-CTCGAACCGCAAAAAGTTTCGAAAATCCTGAAAAAT
648 AACTCCTTCTGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * * *
15226206 AAAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAAGGAGCATTGTATGAATTTAC
712 AAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* ** *
15226271 AAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGTGTAAACCCACCTACCACACTA
777 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * *
15226336 TCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCTCGCCCATC
842 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-CC
* * * *
15226398 TGCTTGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGACCAGACTG
1 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * * *
15226463 AGGGTTACGGCAGCAAGATTGGTAGCAAGAAGAGAGGGACCCGGCCGATCCTCGACTTTTC-CAT
66 AGGGTTGCGGCAGCAAGATCGGTAGCATGCAGAGGGGGACCCGGCCGATCCTCGAC-TTGCGCAT
* * *
15226527 CCCGCCCCTCTGGCCGGCTGAGCGCCCACACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGT
130 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGT
* * * **
15226592 TCATTCCCAGTCTAAGCGTACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAAAGTTGCG
195 TCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCG
* * * * *
15226657 GTAGCACATGCTGGGCACGGGCATGTGTTGGTGCCGCATTTTTCTAC-CTCGGGGCACCATCACC
260 GCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGC-CGGGGCACCATCATC
* * * * * * *
15226721 GGAGCATCGCCGAAAAACTTGACTGACGGAATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGT
324 -GAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGT
*
15226786 GTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCA
388 GTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCA
* * *
15226850 ATCCTCGAGAACTCACATCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCA
453 AACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCA
* *
15226915 TTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGATCCCAAAATCTTGTACACTTCGAGTTTT
518 TTAAAGTATCTGAAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTT
*
15226980 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACA-TCTACCAAGTTTGGGGCCA
583 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA-AGTCTACCAAGTTTGGGGCCA
* * *
15227044 AAAATCCTTCAGAAAAAATTTTAAAAAATCCTGAACCCCAAAAAGTTTCAAAAATCATGAAAAAT
647 AAACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAAT
* * *
15227109 AAAAAACGAGTTATCTTTCCATGAAACGTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
712 AAAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
* * *
15227174 AAGCCATAAAAATGGCATTGGAATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTA
777 AAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
* * * * * * *
15227239 TCGATCCACGGCTAGCGCATCCCGTCTCTTTGGTCGGCGTAGTGCCCGCGCACCC-ACCCA
842 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCC
* * *
15227299 T--TTGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCG
1 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * *
15227362 AGGGTTGCGGCAGCAAGATGGGTAGCACGCAGAGGGGGACCCGGTCGAT-CTCCGGCTTGCGCAT
66 AGGGTTGCGGCAGCAAGATCGGTAGCATGCAGAGGGGGACCCGGCCGATCCT-CGACTTGCGCAT
* * *
15227426 GCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTTATGGGTTGACTTAGGCATA-TGTAG
130 CCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAG-AG
* *
15227490 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAAGTCTAAGATCGGACCGGAGCGAGGGTTGC
194 TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGC
** *
15227555 GGCAGCACATGCTGGGCTCGACCATGTGCTGGTGCCGCATTTTTCTTTGCCGGGGCA-C--CATC
259 GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATC
* *
15227617 --GC-T----GGAGAACCTGACCGACGACATTAGGGTTCCGACGATCAGGGGGGCCGGGGGGGTG
324 GAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
** * *
15227675 TGCACACATGATGTGCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCTTATCACTCATCAA
389 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAA
* *
15227740 ACCTCGAGAACTCAGACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
454 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
15227805 TAAAGTGT-TCGAAATAGGGACA-TTTTTTAAAATGATCGCAAAATCTTGTACACTTCGAGTTTT
519 TAAAGTATCT-GAAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTT
* * * * *
15227868 T-CCTGAATTTTTTTGTGCATGCCTACAAAAATAGAGGGATCACGTCTACCAAGTTTGGGGCCAA
583 TAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAA
* *
15227932 AACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAGAAATA
648 AACTCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* * * * *
15227997 GAAAATGAGTCGTCTTGCCATGACACTTCACGTGAAGGCTTAAGGGACAATTGTATGAATTTACA
713 AAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* * * *
15228062 GGCCATAAAAAAGGCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTATCACCCTAT
778 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
15228127 TGAACCATGGCTTGCGCATCCCGTCTCT-TGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCC
843 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-CC
* * * *
15228187 TGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGATCCGACTGGACCG
1 TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
* * * * * *
15228252 AGGGTTGTGGCAGCAAGATCGGCAGCATGCAGAGGGGGACTCGGCCAATCCTCGGCTTACGCATC
66 AGGGTTGCGGCAGCAAGATCGGTAGCATGCAGAGGGGGACCCGGCCGATCCTCGACTTGCGCATC
* * * * * * * *
15228317 CTGCCCCTCTGGCCGGCTAAGTGCCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACAGATTT
131 CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTT
* * * *
15228382 CATTCCCAGTCTAAGCATACGGAGTTCATTCTCAGTGTAAGATCGGACTGGACCGAGGGTTGCGA
196 CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
* * * * * * *
15228447 CAGCACATGAC-GGGCTCGGGCAAGGGCTGTTCCCGCATTTTTCTTCACCAGGGCACCATCGTCG
261 CAGCACATG-CTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATC-
* *
15228511 GAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGAACGGGGGGGCCGGGGGGGTG
324 GAGCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTG
* *
15228576 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATGAA
389 TGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAA
* * *
15228640 ACCTCAAGAACTCACACCCCCTTACAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCTAT
454 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCAT
* * *
15228705 TAAAGTGTCTGAAATAGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT
519 TAAAGTATCTGAAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTT
* *
15228770 AGCTGAATTTTTTTGTGCAAGCCAAC-AAAATACAAGGATCAAGTCTACCAAGTTTGGGTCCAAA
584 AGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAA
* *
15228834 ACTCCTTTTGAAAAAATTTTAAAAAAT-CTGGAACTGCAAAAAGTTTCAAAAATCATGAAAAATA
649 ACTCCTTCTGAAAAAATTTTAAAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATA
* * *
15228898 GAAAACGAGTCATCTTGCCTTGAAACTTCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
713 AAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
* *
15228963 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTTCCTAAACCCACCTACCACCCTAT
778 AGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* * *
15229028 CGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGT----GCCCGTCCGCCCAC
843 CGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCC
* * **
15229084 T-CAT--TTT-GTCGGTTGGCTTAAGCATATGGAGTTCATTCCCAGTCTAAGATTC-GAATGGAC
1 TGC-TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TCAGACCGGAC
15229144 CGAGGGTTGCGGCA
64 CGAGGGTTGCGGCA
15229158 AAGGGGGACC
Statistics
Matches: 2437, Mismatches: 283, Indels: 89
0.87 0.10 0.03
Matches are distributed among these distances:
886 22 0.01
887 258 0.11
888 137 0.06
889 90 0.04
890 264 0.11
891 5 0.00
892 1 0.00
893 5 0.00
894 60 0.02
895 5 0.00
896 6 0.00
897 4 0.00
898 18 0.01
899 269 0.11
900 94 0.04
901 373 0.15
902 40 0.02
903 590 0.24
904 196 0.08
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (902 bp):
TGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCG
AGGGTTGCGGCAGCAAGATCGGTAGCATGCAGAGGGGGACCCGGCCGATCCTCGACTTGCGCATC
CCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCATTTCATGGGTTGACTTAGGCATACAGAGTT
CATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGG
CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGCCGGGGCACCATCATCGA
GCATCGCCGGAGAACCTGACCGACGGCATTAGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTG
CACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCATATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTATCTGAAATAGGGACACTTTTTTCAAATGATCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCTGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAAAA
AACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
CATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCCC
Found at i:15229184 original size:22 final size:23
Alignment explanation
Indices: 15229140--15229184 Score: 56
Period size: 23 Copynumber: 2.0 Consensus size: 23
15229130 AGATTCGAAT
* *
15229140 GGACCGAGGGTTGCGGCAAAGGG
1 GGACCGAGGCTTGAGGCAAAGGG
*
15229163 GGACCGAGGCTT-AGGCATAGGG
1 GGACCGAGGCTTGAGGCAAAGGG
15229185 TTGGCTTAGG
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
22 8 0.42
23 11 0.58
ACGTcount: A:0.22, C:0.18, G:0.49, T:0.11
Consensus pattern (23 bp):
GGACCGAGGCTTGAGGCAAAGGG
Found at i:15230105 original size:26 final size:26
Alignment explanation
Indices: 15230071--15230121 Score: 75
Period size: 26 Copynumber: 2.0 Consensus size: 26
15230061 TGACTTAGGT
*
15230071 ATACAGAGTTCGTTCCCAGTCTAAGC
1 ATACAGAGTTCATTCCCAGTCTAAGC
* *
15230097 ATACGGAGTTCATTCCTAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
15230122 ATCAGACCAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.27, C:0.24, G:0.20, T:0.29
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGC
Found at i:15233680 original size:26 final size:26
Alignment explanation
Indices: 15233644--15233694 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15233634 TTGACTTAGG
*
15233644 CATACGGAGTTCATTCCCAGTCTAAA
1 CATACGGAGTTCATTCCCAATCTAAA
15233670 CATACGGAGTTCATTCCCAATCTAA
1 CATACGGAGTTCATTCCCAATCTAA
15233695 GATCGGAATG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAATCTAAA
Found at i:15233840 original size:895 final size:893
Alignment explanation
Indices: 15229194--15234911 Score: 7439
Period size: 896 Copynumber: 6.4 Consensus size: 893
15229184 GTTGGCTTAG
* * *
15229194 GCATATGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA--AGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * ** * *
15229259 CTCGGGCATTTGCTGGTGCCGTATTTTTCTTCGTCGGTGCACTATCATCGGAGCATCCTCGGAAA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
*
15229324 ACCTGACCGACGGCATTGGGGTTCCGGCGAT-GGGAGGGGCCAGGGGGGTGTGCACACATGATGT
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGG-GGGGCC-GGGGGGTGTGCGCACATGATGT
* * * *
15229388 GCGGTGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCACCAAACCTTGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * * *
15229453 CACCCCCTTAAAGAGAATTTGAGATTTTACAAGTTTGCTGCCAGCACCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15229518 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTTTACACTTTGAGTTTTTACCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * * *
15229583 ATGCAAGCCAACAAAAATACAATGATCACATCTACCAAGTTTGGGGCAAAAAAATCCTTCCGAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC-CAAAACTCCTTCCGAAA
** *
15229648 AAATTTTAAAAAATCTTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15229713 TTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAACATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15229778 CATTGGCACACAGAAATACGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * ** *
15229843 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCATGCCCACCCGCTTATTTCGTCAGTTGGCTT
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCC--C--GCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** ** * *
15229908 AGGCATACAGAGTTCATTCCCAATCTAAGATCAGACCAGATCGAGGGTTGTGGTAGCAAGATCAA
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAAGATCGA
* * * * * * * *
15229973 TAGCACGTAGAGGGGGACCCGCCCGATCCCCGGCTTGCACATCCCACCCTTATGGTTGGCTGAGC
772 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGC
* * * *
15230038 GCCAGCACGCTCGTTTCGTGGGTTGACTTAGGTATACAGAGTTCGTTCCCAGTCTAA
837 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * **
15230095 GCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGATTGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA--AGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15230160 ATCAGGCTTGTGCTGGTGCTGCATTTTTCTTTGTCGGGGCACCATCGCCAGAGCATCGTCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * * * *
15230225 TA-CTAACCGATGGCATTGGGGTTCCGACGATCGAGGGGGCGGGGAGGGGTGTTCGCACATGATG
129 -ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGC-CGG-GGGGTGTGCGCACATGATG
*
15230289 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCGAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15230354 ACACCCCCTTAAAGAGCAGTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15230419 ATGGGGACACTTTTTTCAAATGGTGACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* *
15230484 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCATCCAAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * * *
15230549 AAATTTTTAAAAATCCTGGAACCGTAAAATGTTTCAAAAATCGTGAAAAATAGAAAATGAGTTGT
451 AAATTTTAAAAAATCC-CGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* * *
15230614 CTTGCCAGGAAACTTCACGTGAAGGCTTAAGGGACAATTTTATGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* **
15230679 GCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTACTT
580 GCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
15230744 GCGCATCCCGTCTCTCTGGTCGACATAGTACCCGCCCGCCCGCCCGCCCGCTTGTTTCGTCGGTT
645 GCGCATCCCGTCTCTCTGGCCGAC---GTA---G--TGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * ** * * * * *
15230809 AGCTTGGGCATACAGAGTTCATTCCCAGTGTAAGATTGGATTGGATCGAGGGTTATGGTAGTAGG
702 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAAG
* * * * * * *
15230874 ATCGACAACATGTAGAGAGGGACCCGCCCGATCCCCGGCTTGCGCATCCCGCCCTTATGGTCGGC
767 ATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGC
* * * *
15230939 TGAGCGCCAGCACGCTCGTTTCGTGGGTTGACTTAGGTATACGAAATTCATTCCCAGTCTAA
832 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15231001 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCAGATCGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA--AGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15231066 CTTGGGCATGTGCTGGTGTCGCATTTTGCTTCGTCGGGGCACCATCACCGGAGTATCAAT-GGAG
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATC-GTCGGAG
* * * * *
15231130 AACCTGACTGACGACATTAGGGTTCCGGTGATC-GGGGGGCCGGGGGGTGTGCGCACAGGATGTG
128 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
15231194 CGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15231259 ACCCCCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTGGCCGTTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15231324 GGGGACACTTTTTTCAAGTGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
15231389 TGCATGCCAA-AAAGAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAGCTCCTTCCG-AAA
388 TGCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
15231452 AATTTTAAAAAATCCC-AGACCGTAAAAAGGTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
452 AATTTTAAAAAATCCCGA-ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15231516 TTGCCATGAAATTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGT
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
*
15231581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGCTTG
581 CATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
15231646 CGCATCCCGTCTCTCTAGCTGACGTAGTGCCTGCACGCCCGCCCGCTTGTTTCATCGGTTGGCTT
646 CGCATCCCGTCTCTCTGGCCGACGTAGTG-C--C-CGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
* * ** * *
15231711 AGGCATAAGGAGTTCATTCCCAGTCTAAGGTTGGACTGGACCGAGGGTTACAGCAGCAAGATCGA
707 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAAGATCGA
* * * * *
15231776 CAGCACGTAGAGGGCGACCCGACCGATCCTCGGCTTGCGTATCCCGCCCCTCT-ATCGGCTGAGC
772 CAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGC
* *
15231840 GCCCGCACGCTCGTTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
837 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15231897 GCAGATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTACGGCAGCACATG-TCGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA--AGACCGAGGGTTGCGGCAGCACATGCT-GG
* * * * ** * * * *
15231961 GCTCAGGTATGTGCTGGTGCCGTATTTTACTTCACCGGGACACCATCGCCAGAGCATCGCCAGAG
63 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
* *
15232026 AACCTGACCGACGGCATTGGGGTTTCGGCAATCGGGGGGGCC----GG-G-G-G-----G-TGTG
128 AACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
15232078 CGATGGGTGCTGGTACTTGGCCCTTGTATTGGCCCCCTATCCCTTATCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15232143 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15232208 GGGGACACTTTTTTCAAATGGTAACAACATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * *
15232273 TGCGTGCCAACAAAAACACAAGGATCACGTC-ACCAAGTTTAGGGCCAAAAATCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
15232337 ATTTTCAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
15232402 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
15232467 TTGCCACATAGAAATATGAAGATGTACCTAAACCCACCTACCACGCTATCGATCCACGACTTGCG
583 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
15232532 CATCCCATCTCTCTGGCCGGCATA--G--CGCCTGCCCGCTCGTTTCGTCGGATGGCTTAGGCAT
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * * *
15232593 ACGAAGTACATTCCCAGTCTAAGATCAAACTGGA-CTGAGGGTTACGGTAGCAGGATCAACAGCA
713 ACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATC-GAGGGTTACGGCAGCAAGATCGACAGCA
* * * * * * *
15232657 -GACAGAGGGTGACCC-AGCCGATCCCTGGCTTGGGCATCCTGCCCCTCTGGCCAGCTGAACGCC
777 CG-CAGAGGGGGACCCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCC
* * * ** *
15232720 CGTACGCTCGTTTTGTGGGTCGACTTAGGCATACTAAGTTCATTCCCGGTCTAA
840 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
15232774 GCATACGGAGTTCATTCACAGTCTAAGATTAGATCGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGA--AGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15232839 CTCGGGCATGTGCTGGTGCCACTTTTTTCTTTGTCGAGGCACCATCGTCGGAGCATCGCCGGAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* *
15232904 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
15232969 GATGGGTGCTGGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * * *
15233034 CTCCCTTAAAGGGCATTTGAGATTTTACAGGTTTGCTGCCTGCAGCCCTTAAAGTGTCCGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * * **
15233099 AGGACACTTTTTTCCAATGGTCACAAAATCTTGTACACTTCGAGTTTCTAGCTAAACGTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15233164 GCATGCCAATAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTGCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
15233229 TTTCAAAAATTCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAGTAGAAAATGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
15233294 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** *
15233359 TGGCATGCACAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
584 TGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
15233424 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
*** * *
15233489 CGGAGTTCATTCCCAGTCTAAGATCAGACAAAATCGAGGGTTACGGCAGCAAGATTGGCAGCACG
714 CGGAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAAGATCGACAGCACG
* * * * * * * *
15233554 CAGTGGGGGACCCGACCAATCCCCGACTTGTGCATCCCGCCCCTCTGGCCGGTTGAGCACCTGCA
779 CAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCA
* *
15233619 CGCTCCTTTCGTTGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15233669 ACATACGGAGTTCATTCCCAATCTAAGATCGGAATGAACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAA-G-ACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * *
15233734 CTCGGGCATGTGCTGGTGCCGCATTTTTTTTCAACGGGGCACCATCGCCGGAGCATAGTCGAAGA
64 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGA
* * * *
15233799 ACCTGACCGACAGCATTGGGGTTCTGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGT
129 ACCTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* ** * *
15233864 GTTGGGCACTGGTACTTGGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCGAGAGCTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15233929 CCCCCTTAAAGAGCATTTGAGATCTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* *
15233994 GGGACACTTTTTTCAAATGGTCACAAAAATCTTGTACATTTCGAGTTTTTGGCTGAATTTTTTTG
324 GGGACACTTTTTTCAAATGGTCAC-AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15234059 TGCATCCCAAAAAAAATACAAGGATCACGTCCACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
15234124 ATTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTGTCTT
453 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15234189 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
15234254 TTGGAACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACGCAATTGATCCATGGCTTGCG
583 TTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
15234319 CCTCCTGTCTCTTTGGCCTG-CGTAGTACCCGCCCGCCCGTCCGCCCGCTCGTTTCATCTGTTGG
648 CATCCCGTCTCTCTGGCC-GACGTAGT----GCCCG--C--CCGCCCGCTCGTTTCGTCGGTTGG
* * * * *
15234383 CTTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACTGTA-CTGAGGGTTGCAGCAGCAGGA
704 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTGGATC-GAGGGTTACGGCAGCAAGA
** * * * * **
15234447 TCGGTAGCACGCAGAGTGGGACCTGACCGATCCTCGGCTTGCGCATCCCGTCTTTCTGGTCGGCT
768 TCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCT
* * * *
15234512 GAGCGCCCGTACGCTCATTTCGTGGGTTGACTTAGGCATATGGAGTTCATTCTCAG--T--
833 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15234569 -C-TA---AG---A-T--C-G-----GATC---AGACCGAGGGTTACGGTAACACATGCTGGGCT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
* * *
15234614 CGGGCATGTGCTGGTGCCACATTTTTCTTGGTCGGGGCCCCAT-GCCGGAGCATCGTCGGAGAAC
66 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
* * * * *
15234678 CTAACTGGCGGCATTGGGGTTCCGGCGATCGGGGGGGTCGGAGGGGGTGTGCGCACATGATGTGG
131 CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGG-CCG-GGGGGTGTGCGCACATGATGTGC
* * * * *
15234743 GATGGGTGCCGATACTTGGCCCTTATATTGGCCGCCAATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15234808 -CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15234872 GGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
15234912 TTTTCAAATG
Statistics
Matches: 4233, Mismatches: 516, Indels: 160
0.86 0.11 0.03
Matches are distributed among these distances:
875 3 0.00
876 120 0.03
877 262 0.06
878 153 0.04
879 78 0.02
880 1 0.00
881 2 0.00
882 2 0.00
883 29 0.01
884 416 0.10
885 5 0.00
889 2 0.00
890 209 0.05
891 234 0.06
892 2 0.00
893 4 0.00
894 2 0.00
895 488 0.12
896 491 0.12
897 134 0.03
898 5 0.00
899 1 0.00
900 6 0.00
901 353 0.08
902 456 0.11
903 256 0.06
904 179 0.04
905 10 0.00
906 324 0.08
907 1 0.00
908 2 0.00
910 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (893 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGAAGACCGAGGGTTGCGGCAGCACATGCTGGGCT
CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAAC
CTGACCGACGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
GAGTTCATTCCCAGTCTAAGATCAGACTGGATCGAGGGTTACGGCAGCAAGATCGACAGCACGCA
GAGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGTCGGCTGAGCGCCCGCACG
CTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15234910 original size:31 final size:31
Alignment explanation
Indices: 15234875--15234940 Score: 132
Period size: 31 Copynumber: 2.1 Consensus size: 31
15234865 TAAAATGGGG
15234875 ACACTTTTTTCAAATGGTCACAAAATTTTGT
1 ACACTTTTTTCAAATGGTCACAAAATTTTGT
15234906 ACACTTTTTTCAAATGGTCACAAAATTTTGT
1 ACACTTTTTTCAAATGGTCACAAAATTTTGT
15234937 ACAC
1 ACAC
15234941 AAAAATATGA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.33, C:0.18, G:0.09, T:0.39
Consensus pattern (31 bp):
ACACTTTTTTCAAATGGTCACAAAATTTTGT
Found at i:15236079 original size:26 final size:26
Alignment explanation
Indices: 15236049--15236101 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15236039 CTTGACTTAG
15236049 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* *
15236075 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15236101 G
1 G
15236102 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15237979 original size:185 final size:185
Alignment explanation
Indices: 15237667--15238075 Score: 566
Period size: 185 Copynumber: 2.2 Consensus size: 185
15237657 GTTGGCTTAT
* * * * * * *
15237667 GCATACGAAGTTCATTCCCAGTCTAAGATCGGGTCAGACTGAGGGTTGTGGCAGCAGGATCGGTA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGACGGTTGTGGCAGCAGGATCGGCA
**** **
15237732 GCATGTGGAGGGAGACCCGGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCCGCTGAGTGC
66 GCACACAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCCGCTGAGTGC
* * *
15237797 CCGCATGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCACAGTATAA
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCACAGTATAA
* * *
15237852 GCATACGGACTTCATTCCCAGTCCAAGATCAGATCGGACCGACGGTTGTGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGACGGTTGTGGCAGCAGGATCGGCA
* * *
15237917 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGC
66 GCACACAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCCGCTGAGTGC
* * *
15237982 CCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
131 CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCACAGTATAA
** *
15238037 GCATACGGAGTTCATTTTCAGTCTAAGATCAGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGAC
15238076 TGAGGGTTAC
Statistics
Matches: 194, Mismatches: 30, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
185 194 1.00
ACGTcount: A:0.20, C:0.28, G:0.29, T:0.23
Consensus pattern (185 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGACGGTTGTGGCAGCAGGATCGGCA
GCACACAGAGGGAGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCCGCTGAGTGC
CCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCACAGTATAA
Found at i:15238047 original size:26 final size:26
Alignment explanation
Indices: 15238011--15238063 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15238001 GTTGACTTAG
15238011 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
* **
15238037 GCATACGGAGTTCATTTTCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15238063 G
1 G
15238064 ATCAGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15238949 original size:26 final size:26
Alignment explanation
Indices: 15238913--15238968 Score: 85
Period size: 26 Copynumber: 2.2 Consensus size: 26
15238903 TGGGTTGACT
*
15238913 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAATC
* *
15238939 TAAGCGTACGGAGTTCTTTCCCAATC
1 TAAGCATACGGAGTTCATTCCCAATC
15238965 TAAG
1 TAAG
15238969 ATCGGACCGG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAATC
Found at i:15239599 original size:904 final size:899
Alignment explanation
Indices: 15237852--15239684 Score: 2712
Period size: 904 Copynumber: 2.0 Consensus size: 899
15237842 CACAGTATAA
* * * *
15237852 GCATACGGACTTCATTCCCAGTCCAAGATCAGATCGGACCGACGGTTGTGGTAGCAGGATCGGCA
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGACGGTTGGGGTAGCAAGATCGGCA
* * *
15237917 GCACACAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGTGC
66 GCACACAAAGGGGGACCCGACCGATCCCCGCCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGC
*
15237982 CCGCACGCTCGTTTCTTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
131 CCGCACGCTCGTTTCTTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
* * * * *
15238047 TTCATTTTCAGTCTAAGATCAGACCGGACTGAGGGTTACGGCAGCACATGCTGGGCTCGAGGATG
196 TTCATTTCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATACCGGGCTCGAGGATG
* * * * * * * *
15238112 TGCTGGTGCCGTATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCGCTGGAGAACCCGACCGG
261 TGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCAGAGCATCACCGGAGAACCCGACCGA
* * * * * *
15238177 CGGCATTGGGGTTTCGGCGATCGGGGGGGCCGAGGGGGGTGTGCGTACATGATGTGCGTTGGGTG
326 CGGCATTGGGATTCCGACGATAGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* *
15238242 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCAAGAACTCACACCCCCTTA
391 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCACACCCCCTTA
* *
15238307 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCCGAAATGGGGACACT
456 AAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCCGAAATGGGGACACT
* * * * *
15238372 TTATTCAAATGGTTAGAAAATCTTGTACATTTCGAGTTTTTGGCAGAATGTTTTTGTGCATGCCA
521 TTATTCAAATGGTCACAAAATCCTGTACACTTCGAGGTTTTGGCAGAATGTTTTTGTGCATGCCA
15238437 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTGAAAAA
586 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTGAAAAA
* * *
15238502 AGTCTCGAACCGGAAAAAGTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
651 AGTCCCGAACCGGAAAAAGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAAC
** *
15238567 TTCACATGAAGGCTTAGGGGACCATTGTATGAATTTACAATCCATAAAAATGGCACTCGCACACA
716 TTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTCGCACACA
*
15238632 GAAATATGAAGATGTGCCTAAATCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCT
781 GAAATACGAAGATGTGCCTAAATCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCT
* * *
15238697 CTCTAGCTGAG-GTAGTGCCCGTCCGCCTGCCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
846 CTCTAGCCG-GCGTAGT--AC--CCACCTG-CTGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * *
15238756 GCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGGTAGCAAGATCGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGACGGTTG-GGGTAGCAAGATCGGC
* * ** *
15238821 AGCACGCAAAGGGGGACCTGGTCGATCCCCTCCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCG
65 AGCACACAAAGGGGGACCCGACCGATCCCCGCCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
15238886 CCCGCACGCTTGTTT-TGTGGGTTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCGTACGG
130 CCCGCACGCTCGTTTCT-TGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACGG
* ** *
15238950 AGTTC-TTTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCATCACATACCGGGCTCG-GG
194 AGTTCATTT-CCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATACCGGGCTCGAGG
*
15239013 CATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCAGAGCATCACCGGAGAACCTGA
258 -ATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCAGAGCATCACCGGAGAACCCGA
*
15239078 CCGACGGCATTGGGATTCCGACGATAGGGGGGGCC-A-GGGGGTGTGCGCACATGATTTGCGATG
322 CCGACGGCATTGGGATTCCGACGATAGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATG
*
15239141 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCGAGAACTCACACCCC
387 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCACACCCC
*
15239206 CTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGGGA
452 CTTAAAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCCGAAATGGGGA
* *
15239271 CACTTTTTTCAAATGGTCACAAAATCCTGTACACTTCGAGGTTTTGAGCTGAATGTTTTTGTGCA
517 CACTTTATTCAAATGGTCACAAAATCCTGTACACTTCGAGGTTTTG-GCAGAATGTTTTTGTGCA
* * * *
15239336 TGCCAAGAAAAATGCAAGGATCATGTCTACCAAGTTTGGGGCCAAAACCCCTTTTGAAAAAATTT
581 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAA-TT
* *
15239401 TAAAAAA-TCCCGAACCGTAAAAAGTTCT-AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
645 GAAAAAAGTCCCGAACCGGAAAAAGTT-TGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCC
* * *
15239464 ATAAAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
709 ATAAAACTTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTC
* * * *
15239529 GCACATAGAAATACGAAGATGTGCCTAAA-CCAACTTACCACCCTATCGATCCACGGCTTGCTCA
774 GCACACAGAAATACGAAGATGTGCCTAAATCC-ACCTACCACCATATCGATCCACGGCTTGCGCA
* *
15239593 TCCCGTCTCTCTGGCCGGCTTAGTACCCACCTGCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
838 TCCCGTCTCTCTAGCCGGCGTAGTACCCACCTGCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
* *
15239655 GCATATGGAGTTCATTCGCAGTCTAAGATC
1 GCATACGGAGTTCATTCCCAGTCTAAGATC
15239685 CGACCAGATC
Statistics
Matches: 835, Mismatches: 85, Indels: 23
0.89 0.09 0.02
Matches are distributed among these distances:
899 57 0.07
900 6 0.01
902 1 0.00
903 191 0.23
904 308 0.37
905 272 0.33
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGACGGTTGGGGTAGCAAGATCGGCA
GCACACAAAGGGGGACCCGACCGATCCCCGCCTTGTGCATCCCGCCCCTCTGGCCGGCTGAGCGC
CCGCACGCTCGTTTCTTGGGTTGACTTAAGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAG
TTCATTTCCAATCTAAGATCAGACCGGACCGAGGGTTACGGCAGCACATACCGGGCTCGAGGATG
TGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCAGAGCATCACCGGAGAACCCGACCGA
CGGCATTGGGATTCCGACGATAGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCAACAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATGTTACAGGTTTGCTGCCAGTAGCCACTAAAGTGTCCGAAATGGGGACACT
TTATTCAAATGGTCACAAAATCCTGTACACTTCGAGGTTTTGGCAGAATGTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACCCCTTCTGAAAAAATTGAAAAA
AGTCCCGAACCGGAAAAAGTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATAAAAC
TTCACATGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTCGCACACA
GAAATACGAAGATGTGCCTAAATCCACCTACCACCATATCGATCCACGGCTTGCGCATCCCGTCT
CTCTAGCCGGCGTAGTACCCACCTGCTGCCCGCTCGTTTCGTCGGTTGGCTTAG
Found at i:15240563 original size:26 final size:26
Alignment explanation
Indices: 15240523--15240572 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15240513 GACTTAGGCA
*
15240523 TACGGAGTTCATTCCCAGTCTAAGCG
1 TACGGAGTTCATTCCCAATCTAAGCG
*
15240549 TACGGAGTTCTTTCCCAATCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
15240573 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.24, C:0.26, G:0.20, T:0.30
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCG
Found at i:15241573 original size:895 final size:899
Alignment explanation
Indices: 15239770--15242100 Score: 3714
Period size: 895 Copynumber: 2.6 Consensus size: 899
15239760 ACCATCGTCG
* *
15239770 GAGAACCTGACCGACGGTATTGGGGTTCCGACCATCGGGGGGGCCAGGGGGTGTGCGCACATGAT
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGAT
* *
15239835 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCTCTCATCAAACCTCAAGAACT
66 TTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACT
15239900 CACA-CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCAATTAAAGTGTCTGA
131 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCAATTAAAGTGTCTGA
*
15239964 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGTGTTTTTAGCTTAATTTTT
196 AAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTT
* * *
15240029 TTGTGCATGCCAAAAAAAATAAAAGGATCACGTCTACCAAGTTTGGAGCCAAAACTCCTTTCAAA
260 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* * *
15240094 AAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCCAAAATCATG-AAAATAGAATACGAGTCGT
325 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
**
15240158 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTGTTGTATGAATTTACAAGCCATAAAAATA
390 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATA
15240223 TCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
455 TCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * *
15240288 GCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCAACCCGCCCGCCTGCCCGTTCGTTTCGTCGGTT
520 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG----CCCGCACGCCTGCCCGTTCATTTCGTCGGTT
* *
15240353 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACTGAGGGTTGCGGGTAGCAA
581 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGGCAGCAA
* **
15240418 GATCGGCAGCACGCAAAGGGGGACCTGGTCGATCCCCTCCTTGTGCATCCCGCCCCTCTGGCCGG
646 GATCGGCAGCACGCAAAGGGGGACCCGGTCGATCCCCTCCTTCCGCATCCCGCCCCTCTGGCCGG
* * *
15240483 CTGAGCGCCCGCACGCTTGTTTTGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
711 CTGAGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGC
* * *
15240548 GTACGGAGTTCTTTCCCAATCTAAGATCGGACCGGACCGAGGGTTGTGGCATCACATGCCGGGCT
776 GTACAGAGTTCTTTCCCAATCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGCCGGGCT
*
15240613 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCAGAGCATCACCG
841 CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCAGAGCATCACCA
* *
15240672 GAGAACCTGACCGACGGCATTGGGATTCCGACGATAGGGGGGGCCAGGGGGTGTGCGCACATGAT
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGAT
*
15240737 TTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACT
66 TTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACT
*
15240802 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTACTACTAGTAGCAATTAAAGTGTCTGA
131 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCAATTAAAGTGTCTGA
*
15240867 AATGTGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTGT
196 AATG-GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTT
* * * *
15240932 TTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCTAGTTTGGGGCCAAAACTCCTTCCGAA
260 TTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
* *
15240997 AAAATTTTAAAAAATCTAGAACCGCATAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
325 AAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGT
*
15241062 CTTGCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATA
390 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATA
15241127 TCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
455 TCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
*
15241192 GCGCATCCCGTCTCTCTGGCTGGCGTAGTG-CC-CAC-CC-GCCCGTTCATTTCGTCGGTTGGCT
520 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCCTGCCCGTTCATTTCGTCGGTTGGCT
* * *
15241253 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTG-TGGCAGTAGGATC
585 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGGCAGCAAGATC
*
15241317 GGCAGCACGCAAAGGGGGACCCGG-CTGATCCCCTCCTTCCGCATCCCGTCCCTCTGGCCGGCTG
650 GGCAGCACGCAAAGGGGGACCCGGTC-GATCCCCTCCTTCCGCATCCCGCCCCTCTGGCCGGCTG
15241381 AGCGCCCGCACGCTCGTTTCGTGGCTTGACTTA-GCTATACGGAGTTCATTCCCAGTCTAAGCGT
714 AGCGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGC-ATACGGAGTTCATTCCCAGTCTAAGCGT
* * *
15241445 ACAGAGTTCTTTCCCAGTCTAAGATCGAACTGGACCGAGGGTTGTGGCAGCACATGCCGGGCTTG
778 ACAGAGTTCTTTCCCAATCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGCCGGGCTCG
* ** *
15241510 GGCATGTGCTGGTGCCGCATTTTTCTTTG-CTGAGGCACCATTGTCGGAGCATCACCA
843 GGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GAGGCACCATCATCAGAGCATCACCA
* * * * *
15241567 GAGAACCTGATCGGCGGCATTGGGGTTTCGACG-TCGGGGTGGCCGGGGGGGTGTGCGCACATGA
1 GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCC-AGGGGGTGTGCGCACATGA
*
15241631 TTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCGAGAAC
65 TTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAAC
* *
15241696 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCAA-TAAAGTGTTT
130 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAG-CAATTAAAGTGTCT
* * * *
15241760 GAATTAGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTGGCTGAATTT
194 GAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTT
* * ** * * *
15241825 TTTTGTGCAGGGCAAAAAAAATACAAGGATCACACCTACCAAGTTTGGGGCCAAAAATACTTCCT
258 TTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCA
** *
15241890 AAAATTTTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAGAATCATGAAAAATAGAAAACGAGTC
323 AAAAAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTC
*
15241955 ATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
388 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** *** * *
15242020 TGGCATTGGCACACAGAAATATGAAGATGTGCCTAAATCCACCTACCACCCTCTCGATCCACGGC
453 TATCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
**
15242085 TTGTTCATCCCGTCTC
518 TTGCGCATCCCGTCTC
15242101 NNNNNNNNNN
Statistics
Matches: 1326, Mismatches: 94, Indels: 25
0.92 0.07 0.02
Matches are distributed among these distances:
894 13 0.01
895 709 0.53
896 77 0.06
897 2 0.00
898 2 0.00
899 2 0.00
902 129 0.10
903 219 0.17
904 173 0.13
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (899 bp):
GAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGGCCAGGGGGTGTGCGCACATGAT
TTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCACTCATCAAACCTCAAGAACT
CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCAATTAAAGTGTCTGA
AATGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTT
TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAA
AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTC
TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAT
CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCACGCCTGCCCGTTCATTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGGGCAGCAAGATCG
GCAGCACGCAAAGGGGGACCCGGTCGATCCCCTCCTTCCGCATCCCGCCCCTCTGGCCGGCTGAG
CGCCCGCACGCTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCGTACA
GAGTTCTTTCCCAATCTAAGATCGAACCGGACCGAGGGTTGTGGCAGCACATGCCGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGAGGCACCATCATCAGAGCATCACCA
Found at i:15244214 original size:26 final size:26
Alignment explanation
Indices: 15244178--15244236 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
15244168 GTTGACTTAG
*
15244178 GCATACAGAGTTCATTCGTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
*
15244204 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCTAGTCTAA
15244230 -CAT-CAGA
1 GCATACAGA
15244237 ATCGGTCCAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 24 0.80
ACGTcount: A:0.31, C:0.22, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCTAGTCTAA
Found at i:15246005 original size:26 final size:26
Alignment explanation
Indices: 15245975--15246027 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15245965 GTTGACTTAG
*
15245975 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15246001 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15246027 G
1 G
15246028 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15246503 original size:908 final size:903
Alignment explanation
Indices: 15243150--15253086 Score: 12007
Period size: 908 Copynumber: 11.0 Consensus size: 903
15243140 CTTAGGCATA
* * * * * * * *
15243150 CGGACCGAGGGTTGCAGCAACAGGATTGGCAGCACGCAAAGGGGGACCCGGCCGATCTCTGACTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTT
* * * * * * * *
15243215 GCGCATCCCACCCATCTGGCCGGCTGAGCGCTCGGACTCTTGTTTCATGGGTTGACTTAGAG-AT
66 GCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG-GCAT
* * *
15243279 ACGGAGTTCATTCCCAGCCTAAGCATACGGACGGTTCGTCCCCA-TCTAA-AGTCACGACC-GAT
130 ACGGAGTTCATTCCCAGTCTAAGCATACGGA--GTTCATTCCCAGTCTAAGA-TCA-GACCAGA-
* * * * ** * * * * *
15243341 ACAAAGGTTGCGGTAGCACATGCCCAGCCTCTGGGCATGTGATGGTGCCGTATTTTTCTCCGTCG
190 CCGAGGGTTGCGGCAGCACATG-CTGGGCTC-GAGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * * ** * * *
15243406 ACCACGAGCACCATTGCCAGAGCATCGTCGG-G-ACCTAAGCCGACGGCATT-GGGTTCCGGCTG
253 -----GGGCACCATCGCCGGAGCATCACCGGAGAACCTGA-CCGGCGGCATTGGGGTTCCGAC-G
*
15243468 ATCGGAGGGGGCCAGGGGAGTGTGCGGCACATGATGTGCGATGGGGTGCTTAGGTACTTGG-CCT
311 ATCGG-GGGGGCC-GGGGGGTGTGC-GCACATGATGTGCGAT-GGGTGC-T-GGTACTTGGCCCT
*
15243532 TATATTGGCCCCTATCCATCATCAAA-CTCGAGAACTCACACCCCCTTAAAGAGCATTT--GATT
370 TATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
* * * * *
15243594 TTATAGGTTTGTTGCCAATAGCCATTAAAGTGGC-GAAAATGGGCACACTTTTTTTCAAATGGTC
435 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG-AAATGGGGACAC-TTTTTTCAAATGGTC
* *
15243658 ACAAAATCTTGTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGTCAACAAAATTACAAGG
498 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* ** * *
15243722 ATCACATCTACCAAGTTT-GGTTCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCA
563 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGTA
15243786 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
627 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
**
15243851 TTAA-GGACCATTGTATGAATTTACAAG-CATAAAAATGGCATTGGCACACAGAAATATGAAGAA
692 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG-A
*
15243914 T-TGCCTAAACCCACCTACCA-CCTATCGATCCACGGCTTGCG-A--CCGTCTCTCTGGCCGACG
756 TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCG
* * * *
15243974 TTAGT-----T--CCGCCCGCCCACCCGCTTGTTTCATCGATTGGGCTTATGCATACCGGAGTTC
821 -TAGTGCCGCTGCCCGCCCGCCCGCCCGCTCGTTTCATCGATT-GGCTTAGGCATA-CAGAGTTC
* *
15244032 ATTCCTAGTCTAAGATCTGAC
883 ATTCCCAGTCTAAGATCGGAC
* * * * * *
15244053 CGGATCGAGGCTTGCAGTAGCAGGATCAGG-AGCACGCAGAGTGGGGACCTG-CCGATCCCCGTC
1 CGGACCGAGGGTTGCGGCAGCAGGATC-GGCAGCACGCAGAG-GGGGACCCGTCCGATCCCCGGC
** * * * * *
15244116 TTAAGCAT-CTGTCCCTCTGG-TCGGTTGAGTGCCCGCACACTCCGTTTCGTGGGTTGACTTAGG
64 TTGCGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCT-CGTTTCGTGGGTTGACTTAGG
* ** * * * * *
15244179 CATACAGAGTTCATTCGTAGTCTAAGCATACGGAGTTCATTCCTAGTCTAACATCAGAATCGGTC
127 CATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGAC
* * * *
15244244 CAAGGGTTGCGGCAGCACATGCTGGGCACGGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGG
191 CGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * * **
15244309 CACCATCGTCGGAGCATCATCGGAGAACCTGACCGACGGCATTGTGGTTTCGGTGATCGGGGGGG
256 CACCATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGG
* * *
15244374 CCGGGGGTTGTGCGAACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTGGCCCCTATC
321 CCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATC
* ** * * * * *
15244439 CCTCATTAAATTTCGAGAACTCACACCCCCTTAAAAAACACTTAAGATTTTACAGGTTTGTTGCC
386 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG-C
15244504 CAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACT
450 CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* *
15244568 T-GAGTTTTTAGCTGAA-TTTTTTGTGCATGCCCAACAAAAATACAAGGATCCCGTCTA-CTAGT
515 TCGAGTTTTTAGCTGAATTTTTTTGTGCATG-CCAACAAAAATACAAGGATCACGTCTACCAAGT
* * *
15244630 TTGGGTCCAAAACTCATTCCGAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATC
579 TTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATC
*
15244695 ATGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
643 ATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
** * *
15244760 TGAATTTACAAGCCATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCATCT
708 TGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
15244825 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGTCGGCGTA-----G-T----GCC
773 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCTGCCCGCC
* * * * * * *
15244880 CGTCTG--CG-T-ATTTCGTCGTTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTCAGATCGAA
838 CGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
15244941 C
903 C
* ** * ** * * *
15244942 CGGACCGAGGGTTGCGGCAACAGGATCAACAGCACGTAGAGGGGGACCCAACTGATCCTCGACTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTT
* * * * * *
15245007 GCGCATCCCGCCCATCTGGCCGGCTGAGCGCCCGGACGCTTGTTTCATGGGTTGACTTAGGGATA
66 GCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * *
15245072 CGGAGTTCATTCCCAGCCTAAGCATACGGAGTTCGTTCCCCA-TCTAAGATCAGACCGGAACGAG
131 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCCAGTCTAAGATCAGACCAGACCGAG
* * ** * * *
15245136 GGTTGCAGCAGCACATGCCGACCTCGGGCATGTGCTGGTGCTGCATTTTTCTCCGTCGGGGCACC
195 GGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* ** * * * *
15245201 ATCACCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCCGGCGATCGGAGGGGTCGA
260 ATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-
15245266 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGGCCCCTATCCC
324 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GGCCCCTATCCC
* * *
15245331 TCATCAAACCTTGATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTCCTGCCAG
388 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
15245396 TAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
453 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* *
15245461 GGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAATTTGG
518 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * *
15245526 GGCCAAAACACCTTCCG-AAAAATTTTAAAAAAATCCCAGACCGCAAAAGGTTTCAAAAATCATG
583 GGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCCGA-ACCGTAAAAAGTTTCAAAAATCATG
*
15245590 AAAAATAGAAAAC-AGGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACG
646 AAAAATAGAAAACGA-GTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* *
15245654 AATTTACAAGCCATAAAAATGGCATTAGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
710 AATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTAC
* *
15245719 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGGCATAGTGCCCGCCTGCCCGCC
775 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCG-CTGCCCGCC
* * * **
15245784 CGCCCGCCCGCTTGTTTCATCGGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAAA
838 CGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
15245849 C
903 C
* * * * * * * * **
15245850 CAGACCAAGGGTTGTGGCAGCAGGATCGGCAGCATGTAAAGGGGGACCCGTCTGATGCTTGGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTT
* * * * *
15245915 GCGCATACTGCCCCTCTGGCTGGCTGGGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATA
66 GCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * *
15245980 CGGAGTTCATTGCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGG
131 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * ** *
15246045 GTTGGGGCAGCACATACTGGGCTCGAGAATGTGCTGGTGCCGCATTTTTCTTCACCGGGGTACCA
196 GTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
* * * * * * *
15246110 TCGTCGGAGCATCGCCGGAGAACCTGACTGGTGGCATTGGGTTTCTGATGATCGGGGGGGCCGGG
261 TCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
* *
15246175 GGGTGTGCCCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCGTATCCCTC
326 GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTC
* * * *
15246240 ATCAAACCTCAAGAACTGACACCCCCTTAAAGAGCATTTCAGATTTTATAGGTTTGCTGCCAGTA
390 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* *
15246305 GCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTCCACTTCGAG
455 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * * *
15246370 TTTTTAGCTGAATTTTTTTCTGCAAGCGAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGG
520 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
** *
15246435 CCAAAACTCCTTCTC-AAAAAATTTTAAAAAAATCTCGAACCGTAAAAAGTTTTGAAAATCGTGA
585 CCAAAACTCCTTC-CGAAAAAATTTT-AAAAAATC-CGAACCGTAAAAAGTTTCAAAAATCATGA
* *
15246499 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTGACGTGAAAGCTTAAGGGACCATTGTATGAA
647 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
**
15246564 TTTACAAGAAATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAACCCACCTACC
712 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACC
* * *
15246629 ACCCTATCGATCCACGGCTTGCGCAT-CCGTCTCTCTGGGCGGCGTAGTGCCCGCCCGCCCGCCT
776 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCG-CTGCCCGCCC
* * * * **
15246693 GCCCGCCCGCTCGTTTCGTCGATTAGCTTAGGCATACGGAGTTCATTCCCAGTCTATGATTAGAC
839 GCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
* ** * * * * **
15246758 CGGACTGAGGGTTATGGCAACAAGATCTGCAGCACACAGAGGGGGACCCAACCGATCCCCGGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTT
* * * * *
15246823 GTGCATCCCGCCCCTCTGGCCGGCTGAGCGGCTGCACGCTCGTTTCGTGGGTTGACTTAGGCGTA
66 GCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* **
15246888 CGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCGAGG
131 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * * *
15246953 GTTACGGTAGCACATGCTGGGGTC-AGGCATGTGCTGGTGCCACATTTTTCTTTGCCGGGGCACC
196 GTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * **
15247017 ATCACCGGAGCGTCGCCGGAGAACCTGACCAACGGCATTGGGGTTCCGACGATC-GGGGGGCCTG
260 ATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC-G
*
15247081 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATCCC
324 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCC
15247146 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
388 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
15247211 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
453 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*
15247276 AGTTTTTAGCTGAAATTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
518 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * ** *
15247341 GGCCAAAAATCCTAT-CGAAAAAATTTCAAAAAATCCCTAACCACAAAAAGTTTCAAAAATCTTG
583 GGCCAAAACTCCT-TCCGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATG
* *
15247405 AAAAATAGAAAACGAGTCGTCTTGCCATGGAACTCCACGTGAAGGCTTAAGGGACCATTGTATGA
646 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
*
15247470 ATTTACATGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
711 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
*
15247535 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-C-GCCCGCCCGC
776 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCTGCCCGCCCGC
* * * *
15247598 CCG--C-C-CGTTTCGTCGGTTGGCTTAGGCGTACAGAGTTCATTCCCAGTCTAAGATTGGAC
841 CCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
* * * * * ** *
15247657 CCGACCGAGGGTTGCGGCAGCAAGATTGACAGCACACAGAATGGGACCCGAT-CGATGCCCGGCT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCG-TCCGATCCCCGGCT
* * * * *
15247721 TGCTCATCCCGCCCCTCTGG-TCGGCTGATCGCCCGTACGCTCGTTTCATGGGTTGACTTAGGAA
65 TGCGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * *
15247785 TACGGAGTTCATTCCCAGTCTAAGCATATGAAGTTCATTCCCAGTCTAAGATCGGACCGGATCGA
129 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
** * * *
15247850 GGGTTGCAACAGCACATGCTGGGCTCGGGCATGTGCTGGTACGGCATTTTTCTTCGTCGGGGCAC
194 GGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCAC
* * *
15247915 CATCGTCGGAGCATCACCGGAGAACCTGACCGACGGTATTGGGGTTCCGAC-AGTCGGGGGGGTC
259 CATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA-TCGGGGGGG-C
* * *
15247979 GGGGGGGTGTGCGTACATGATTTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
322 CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATC
* * *
15248044 CATCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGTTGCC
386 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
* *
15248109 AATAGCCATTAAAGTGGC-GAAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
451 AGTAGCCATTAAAGTGTCTG-AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
* * * *
15248173 TCGAGTTTTTAGCTGAATCTTTTTGTGCATGTCAACAAAAATACAAGGATCACATCTACTAAGTT
515 TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTT
** * * *
15248238 TGGGTTCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCTAAACCGTAAAAAGTTTCAAAAATCT
580 TGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC-GAACCGTAAAAAGTTTCAAAAATCA
*
15248303 TGAAAAATAGAAAACGAGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
644 TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAT
* *
15248368 GAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGAAT-TGCCTAAACCCACCT
709 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAG-ATGTGCCTAAACCCACCT
* * * * *
15248432 ACCACCCTATCGATCCACGGCTTGCACATCCTGTCTCTCTGGCCGACGTAGTGCCG--GCTCGTC
773 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCTGCCCGCC
* * *
15248495 CGCCCACCCGCTCGTTTCATCGATTGGCTTAGGCATGCAGAGTTCATTCCTAGTCTAAGATCGGA
838 CGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGA
15248560 C
903 C
* ** ** * * * * * *
15248561 TGGAGTGAGGGTTATGACAGCAGGATTGACAGCATGCAGAGGGGGACCAGGT-CGATCCTCGGCT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACC-CGTCCGATCCCCGGCT
* * * *
15248625 TGCGCATCCTGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTTGTTTTGTGGGTTGACTTAGGCAT
65 TGCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
*
15248690 ACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
130 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * *
15248755 GGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGTCGCATTTTTCTTCCTCGGGGCACC
195 GGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * **
15248820 ATCGCCGGAGCATCATCGGAGAACCTGACCAGCGGCATTGGGGTTCTGGTGATCGGGGGGGCCGA
260 ATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG-
* *
15248885 GGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGACCCCTAACCC
324 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCC
* * *
15248950 TTATCAAATCTCGAGAACTCACACCTCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
388 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
*
15249015 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAATTCG
453 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
* * * * *
15249080 AGTTTTTGGGTGAATTTTTTTTTGCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGG
518 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* * * * *
15249145 GGCCAAAACCCCATCCGAAAAAATTTAAAAAAATTCGAAACC--AGAAAAGTTTCAAAAATCGTG
583 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCG-AACCGTA-AAAAGTTTCAAAAATCATG
* * *
15249208 AAAAATAGAAAACGAGTCAT-TGTGCCATGAAACTTCACGTG-AGTGCTTAAAGCACCATTGTAT
646 AAAAATAGAAAACGAGTCGTCT-TGCCATGAAACTTCACGTGAAG-GCTTAAGGGACCATTGTAT
*
15249271 GAATTTACAAGCCATAAAAATGGCATTGGCTTGCAGAAATATGAAGATGTGCCTAAACCCACCTA
709 GAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTA
* *
15249336 CCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-----G-T----GCCC
774 CCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCTGCCCGCCC
* * * * *
15249391 GCCCGCCTGCTCGTTTCGTCGATTGGCTTAGGCATACAGCGTTCATTCCCAATCTAAGATCAGAC
839 GCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
* * ** * * * *
15249456 CAGACCGAGGGTAGCGGCAGCAGGATCGATAGTATGCAGAGGGAGACCCGCCCGATCCCCGGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTT
* ** *
15249521 GCGTATCCCATCCCTCTGGCTGGCTGAGCGCCCGCACGTTCGTTTCGTGGGTTGACTTAGGCATA
66 GCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
*
15249586 CAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACCAGACCGAG
131 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAG
* * **
15249650 GGTTGCGGCAGCACATGCTGGGCTCGAGCAAGTGCTGGTGCCGCATTTTTCTTCGTCGAGGTGCC
195 GGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * ** *
15249715 GTC-CTCGGAGAATCACCGGAGAACCTGACCGGCGGCATTGAGGTTCC-ATCGATC-AAGGGGTC
260 ATCGC-CGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCC
* *
15249777 AGGGGGTGTGCGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
323 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCC
* * *
15249842 CTCATCAAACCTTGAGAGCTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCA
387 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
*
15249907 GTAGCCATTAAAGTGTCAGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
452 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
* *
15249972 GAGTTTTTAGCTG-ATGTTTTTTGTGCATGCCAACAAAATTACAAGGATCACATCTACCAAGTTT
517 GAGTTTTTAGCTGAAT-TTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * * * * * ** *
15250036 AGGACCAAAACTTCTTTCGAAAAAATTTTAAAAAATCCCAAACCGTTAAAAGTTTTTAAAATCGT
581 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT-CCGAACCGTAAAAAGTTTCAAAAATCAT
15250101 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
645 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * * * * *
15250166 ATTTTTACAAGCCATAAAAATGGCATTTGCATGTAGAAATATAAAGATG-GGCTGAAAACCACCT
710 A-ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCT
* * * *
15250230 ACCACCCTATCGATCCACAGCTTGCACATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG
773 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCG-CTGCCCG
* * * * * * *
15250295 CCCGCCTGCCCGCTCATTTCATCGATTGGCTTCGGCATACGGACTTCATTCCCAATCTATGATCG
836 CCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCG
15250360 GAC
901 GAC
** * * * **
15250363 TAGACCGAGGGTTGCAGTAGCAGGATCAGCAGCACGCAGAGGGGGACCCGGT-CGATCATCGGCT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCC-GTCCGATCCCCGGCT
* * * * * * *
15250427 TGTGCATCTCGCCCTTCTGG-TCGACTGAGCGCCCGAAAGCTCGTTTCGTGGGATGACTTAGGCA
65 TGCGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCA
* * * * *** *
15250491 AACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAAGATCGGATTTGACTGA
129 TACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGA
* ** * * *
15250556 GGGTTGCGATAGTAGGATCGGCAGCACGTAGAGGGGGAC-CTGATCA-ATCCTCGGCTTG-CGCA
194 --G--G-G-T--T--G--CGGCAGCACAT-G-CTGGG-CTC-GAGCATGTGCT-GG--TGCCGCA
*** * * * * *** ** * *
15250618 TCCTGCCCCTATGGCCTGTTGAGCGCCCGCACCCTCGTTTCGTG-G-GTTGGCTTAG-GCAT-A-
240 T--T-TTTCT-T---C-GTCG-G-G---GCACCATCG--CCG-GAGCATCACCGGAGAACCTGAC
* * * *
15250678 CGGTC-GAATTGGGGTTCCGACGATC-GAGGGGCCGAGGGGTGTGCGCACATGATGTACGATGGG
289 CGG-CGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGG
*
15250741 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCT
353 TGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * *
15250806 TAAAGAGCATTTGAGATTTTGCAGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGTCA
417 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
15250871 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGC
482 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * **
15250936 CAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAATCCTTCAAAAAAAATTTTAA
547 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * *
15251001 AAAATCCCAAACCGTAAAAAGTTTCAAAAATCTTGAAAAATAGAAAACGAGTCGTCTTGCCATAA
612 AAAAT-CCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* * **
15251066 AACTTCACGTGAGGGCTCAAGGGACCATTGTATGAATTTACAAGCTGTAAAAATGGCATTGGCAT
676 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * **
15251131 GAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCTA
741 GCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCG
* * * * * * *
15251196 TCTCTTTGGCTGGCATAGTG-C-CTGCCTGCCCGTCCACCCGCTCGTTTCGTCGATTGGCTTAGG
806 TCTCTCTGGCCGGCGTAGTGCCGCTGCCCGCCCGCCCGCCCGCTCGTTTCATCGATTGGCTTAGG
*
15251259 CATACAGAGTTCATTCCCAGTCTGAGATCAGG-C
871 CATACAGAGTTCATTCCCAGTCTAAGATC-GGAC
* * * * * * * * * *
15251292 TGGATCAAGGGTTGCGGCAGTAGGATCGGCAGCACGTAGTGGGAGACCCGGCTGATCCCTGGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTT
* * * ** * * * * *
15251357 ACGCATCTCGCCCCTCCGGCCAGTTAAGCGCCTGCATGCTTGTTTCGTGGGTTGACTTAGGCATA
66 GCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
* * * * *
15251422 GGGAGTTCATTCCCGGCCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCAGACCGAAG
131 CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
* * * * *
15251487 GTTGCGGCAACACTTGCTGGGCT-TAGGCATGTGCTGGTACCACATTTTT-TTCGTCGGGGCACC
196 GTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
** * * * * * * *
15251550 ATCGCCGGAGCATCGTCGGAGAACCTGAACTGTGGCATTGGGGTTTCGGCGATCGGCGGGGTCGG
260 ATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG-GGGGGCCG
** *
15251615 GGGGGTGTAAGCACATGATGTGCGATTGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCC
324 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCC
15251680 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
388 TCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAG
* * *
15251745 TAGCCATTAAAGTGTTTGAAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCA
453 TAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCG
*** * * *
15251810 AGTTTTTAGCTGAATTTTTTTGTGCACAACAACAAAAATACAAGGATCACATCTACCAAGTTCGA
518 AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG
* *
15251875 GGCAAAAACTCCTTCCAAAAAAATTTTAAAAAATCTCGAACCAG-AAAAAGTTTCAAAAATCATG
583 GGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CGAACC-GTAAAAAGTTTCAAAAATCATG
* *
15251939 AAAAAAAGAAAACGAGT-GTCTTGCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGA
646 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
* ** *
15252003 ATTTACAAGCCATAAAAATGGCATTCGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACC
711 ATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * *
15252068 GCCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTA-----G-TGCCCGCTCGC
776 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCTGCCCGCCCGC
* ** *
15252127 CCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCTGGCCTAAGATCGGAC
841 CCGCCCGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
** * * * **
15252190 TAGACCGAGGGTTGTGGTAGTAGGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTT
1 CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTT
* * * *
15252255 GCGCATCCCGACCCTCTGG-TCGGCTGAGCACCCGTACGCTCGTTTTGTGGGTTGACTTAGGCAT
66 GCGCATCCCGCCCCTCTGGCT-GGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCAT
* * * * * *
15252319 ACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCTAATCTAAGATCGGATCAGATCGAG
130 ACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAG
* * * * * * * * *
15252384 GGTTACGGCAGTACTTGCTGGGCTTGGGCATGTGCTGGTGTCACATTTTTCTTCATCGGGACACC
195 GGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACC
* * * ** * *
15252449 ATCGCCGGGGCATCAACGGAGAACTTGACCGGTTGCTTTGGGGTT-CTAGCGATCGGGGGGGCCG
260 ATCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA-CGATCGGGGGGGCCG
* * *
15252513 GGGGGTGTGCACACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATATTGGGCCCTATCCCT
324 GGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCT
* * * *
15252578 CATCAAACCTCGAGAACTCACACTCCCTTAAAGAACATTTGAGATTTTATAGGTTTGCTGTCAGT
389 CATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
* * *
15252643 AGCCATTAAAGTGTATGAAATGCGAACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
454 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* * *
15252708 GTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGTG
519 GTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * ** *
15252773 GCCAAAACTCCCTCCGAAAAAATTTTAACAAAATCCAGAACCGTAAAATGTTTCGTAAATCGTGA
584 GCCAAAACTCCTTCCGAAAAAATTTTAA-AAAATCC-GAACCGTAAAAAGTTTCAAAAATCATGA
* * *
15252838 AAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACTATTGTATCAA
647 AAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAA
*
15252903 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACAA
712 TTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA
* ** * *
15252968 CCCTATCGATCCACGGCTTGCGCATCCCGTGTCTCTAACCGGCGTAGTG-CGC-GCTCGCCTGCC
777 CCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCTGCCCGCCCGCC
* * * * * *
15253031 CGCTCGCTAGTTTCATCGGTTGGCTTAGGGCTTACGGAGTTCATTCCCAGTGTAAG
842 CGCCCGCTCGTTTCATCGATTGGCTTA-GGCATACAGAGTTCATTCCCAGTCTAAG
15253087 CATACGAAGT
Statistics
Matches: 7829, Mismatches: 1005, Indels: 399
0.85 0.11 0.04
Matches are distributed among these distances:
888 127 0.02
889 217 0.03
890 141 0.02
891 88 0.01
892 291 0.04
893 463 0.06
894 137 0.02
895 540 0.07
896 41 0.01
897 234 0.03
898 369 0.05
899 541 0.07
900 516 0.07
901 37 0.00
902 202 0.03
903 641 0.08
904 634 0.08
905 4 0.00
906 50 0.01
907 638 0.08
908 1075 0.14
909 49 0.01
911 2 0.00
912 2 0.00
913 6 0.00
914 5 0.00
915 7 0.00
916 1 0.00
917 10 0.00
919 11 0.00
920 1 0.00
921 8 0.00
922 7 0.00
923 6 0.00
924 3 0.00
925 2 0.00
926 2 0.00
927 1 0.00
928 1 0.00
929 210 0.03
930 3 0.00
931 4 0.00
933 95 0.01
934 387 0.05
935 5 0.00
936 7 0.00
937 4 0.00
938 3 0.00
939 1 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (903 bp):
CGGACCGAGGGTTGCGGCAGCAGGATCGGCAGCACGCAGAGGGGGACCCGTCCGATCCCCGGCTT
GCGCATCCCGCCCCTCTGGCTGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGG
GTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA
TCGCCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGG
GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCA
TCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAG
CCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGT
TTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGC
CAAAACTCCTTCCGAAAAAATTTTAAAAAATCCGAACCGTAAAAAGTTTCAAAAATCATGAAAAA
TAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTA
CAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCT
ATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCTGCCCGCCCGCCCGCC
CGCTCGTTTCATCGATTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCGGAC
Found at i:15246922 original size:26 final size:26
Alignment explanation
Indices: 15246886--15246936 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15246876 GACTTAGGCG
15246886 TACGGAGTTCATTCCCAGTCTAAGAA
1 TACGGAGTTCATTCCCAGTCTAAGAA
15246912 TACGGAGTTCATTCCCAGTCTAAGA
1 TACGGAGTTCATTCCCAGTCTAAGA
15246937 TTGGACCAGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAGTCTAAGAA
Found at i:15247379 original size:25 final size:26
Alignment explanation
Indices: 15247345--15247399 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
15247335 GTTTGGGGCC
* *
15247345 AAAAATCCTATCGA-AAAAA-TTTCA
1 AAAAATCCTAACCACAAAAAGTTTCA
15247369 AAAAATCCCTAACCACAAAAAGTTTCA
1 AAAAAT-CCTAACCACAAAAAGTTTCA
15247396 AAAA
1 AAAA
15247400 TCTTGAAAAA
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 6 0.23
25 6 0.23
26 5 0.19
27 9 0.35
ACGTcount: A:0.56, C:0.20, G:0.04, T:0.20
Consensus pattern (26 bp):
AAAAATCCTAACCACAAAAAGTTTCA
Found at i:15248722 original size:26 final size:26
Alignment explanation
Indices: 15248686--15248738 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15248676 GTTGACTTAG
15248686 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15248712 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15248738 G
1 G
15248739 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15249617 original size:26 final size:26
Alignment explanation
Indices: 15249581--15249633 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15249571 GTTGACTTAG
15249581 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15249607 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15249633 G
1 G
15249634 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15250657 original size:185 final size:185
Alignment explanation
Indices: 15250329--15250680 Score: 422
Period size: 185 Copynumber: 1.9 Consensus size: 185
15250319 ATTGGCTTCG
*
15250329 GCATACGGACTTCATTCCCAATCTATGATCGGACTAGACCGAGGGTTGCAGTAGCAGGATCAGCA
1 GCATACGGACTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTGCAGTAGCAGGATCAGCA
* * * * * *
15250394 GCACGCAGAGGGGGACCCGGTCGATCATCGGCTTGTGCATCTCGCCCTTCTGGTCGACTGAGCGC
66 GCACGCAGAGGGGGACCCGATCAATCATCGGCTTGCGCATCTCGCCCCTATGGCCGACTGAGCGC
*
15250459 CCGAAAGCTCGTTTCGTGGGATGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
131 CCGAAACCTCGTTTCGTGGGATGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
15250514 GCATATGGAGTTCATTCCTAGTCTAAGATCGGATTTGACTGAGGGTTGC-GATAGTAGGATCGGC
1 GCATACGGACTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTGCAG-TAGCAGGATCAGC
* * * *
15250578 AGCACGTAGAGGGGGACCTGATCAATCCTCGGCTTGCGCATC-CTGCCCCTATGGCCTG-TTGAG
65 AGCACGCAGAGGGGGACCCGATCAATCATCGGCTTGCGCATCTC-GCCCCTATGGCC-GACTGAG
* * * * *
15250641 CGCCCGCACCCTCGTTTCGTGGGTTGGCTTAGGCATACGG
128 CGCCCGAAACCTCGTTTCGTGGGATGACTTAGGCAAACGG
15250681 TCGAATTGGG
Statistics
Matches: 138, Mismatches: 26, Indels: 6
0.81 0.15 0.04
Matches are distributed among these distances:
184 2 0.01
185 135 0.98
186 1 0.01
ACGTcount: A:0.20, C:0.26, G:0.30, T:0.24
Consensus pattern (185 bp):
GCATACGGACTTCATTCCCAATCTAAGATCGGACTAGACCGAGGGTTGCAGTAGCAGGATCAGCA
GCACGCAGAGGGGGACCCGATCAATCATCGGCTTGCGCATCTCGCCCCTATGGCCGACTGAGCGC
CCGAAACCTCGTTTCGTGGGATGACTTAGGCAAACGGAGTTCATTCCCAGTCTAA
Found at i:15251468 original size:26 final size:26
Alignment explanation
Indices: 15251417--15251469 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15251407 GTTGACTTAG
* *
15251417 GCATAGGGAGTTCATTCCCGGCCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
*
15251443 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGCCTAA
15251469 G
1 G
15251470 ATCAGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.26, G:0.25, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGCCTAA
Found at i:15252351 original size:26 final size:26
Alignment explanation
Indices: 15252315--15252367 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15252305 GTTGACTTAG
*
15252315 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
* *
15252341 GCATACGGAGTTCATTCCTAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15252367 G
1 G
15252368 ATCGGATCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15253097 original size:26 final size:26
Alignment explanation
Indices: 15253063--15253112 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15253053 GCTTAGGGCT
* *
15253063 TACGGAGTTCATTCCCAGTGTAAGCA
1 TACGAAGTTCATTCCCAGTCTAAGCA
15253089 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCCCAGTCTAAG
15253113 ATCAGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCCCAGTCTAAGCA
Found at i:15254883 original size:899 final size:895
Alignment explanation
Indices: 15253048--15255627 Score: 3685
Period size: 899 Copynumber: 2.9 Consensus size: 895
15253038 TAGTTTCATC
* * * *
15253048 GGTTGGCTTAGGGCTTACGGAGTTCATTCCCAGTGTAAGCATACGAAGTTCATTCCCAGTCTAAG
1 GGTTGACTTA-GGCATACGGAGTTCATTCCCAGTCTAAGCATAAG-AGTTCATTCCCAGTCTAAG
* *
15253113 ATCAGACCGGACCGAGTGTTGCGGCAGCACTTGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTT
64 ATCAGACCGGACCGAGGGTTGCGGCAGCACTTGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTT
* * * *
15253178 TCTTCGTCGAGGCACCATCGTCGGAGCATCATCGGAGAACCTGACCGATTGCTTTGGGGTTCCGG
129 TCTTCATCGAGGCACCATCGTCGGAGCATCATCAGAGAACCTGACCGGTTGCTTTGGGGTTCCAG
15253243 CGATCGGGGGGGCCGGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
194 CGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTAT
* * *
15253308 ATT-ACCGCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
258 ATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTT
* *
15253372 ACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAA
323 ACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAA
* *
15253437 AATCTTGTACACTTTCAGTTTTTTGCTGAATTTTTTTGTGCATGCCAACAAATATACAAGGATCA
388 AATCTTGTACAC-TTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCA
* ** ** * * ** * ** *
15253502 CATCTAATACTTTAGGGCCACAACTCCTTCCAAAAAAATGTTAAAAAATCTTGAATCGCAAAAAG
452 CGTCTACCAAGTTAGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAG
* *
15253567 TTTCCAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
517 TTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
15253632 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGTATGCAG-AAATTGAAGATGTGCC
582 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCC
* * * * *
15253696 TAAACCCACCTACCACCTTATCGAACCACGGCTTGCGCATCCCTGTCTCTCTGGCAGGTGTAGTG
647 TAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCC-GTCTCTCTGGCCGGCGTAGTG
* * * *
15253761 CCCGCCCGCCTGCCCCCTTGTTTCGTCAGTTGGCTTAGGCATATAGAGTTCATTCCCAGTCTAAG
711 CCCGCCCGCCTG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * *
15253826 ATTGGACCAGACCAAGGGTTGTGGCAGCAAGATCGGTAGCACGCAGAGGGGGACCCGACCGATCC
775 ATTGCACCAGACCAAGGGTTGTGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCAACCGATCC
* * * *
15253891 CCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTG
840 CCGGCTTACGCATCCCGACCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTG
* * * *
15253947 GGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATAGAGTTCATTCCCAATCTGAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-AGAGTTCATTCCCAGTCTAAGA
* * * *
15254012 TCAGACAGGACCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTT
65 TCAGACCGGACCGAGGGTTGCGGCAGCACTTGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT
* * ** * * *
15254077 CTTCATCGGGGCACCATCG-CAGGAGCATCGTCAGAGAACCTGACCGGCGGCATTGGGGTTTCTG
130 CTTCATCGAGGCACCATCGTC-GGAGCATCATCAGAGAACCTGACCGGTTGCTTTGGGGTTCCAG
* ** * *
15254141 CGATCGGAGGGGCCGGGGGGTGTGCGTACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTGTA
194 CGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* *
15254206 TTGGCCCCCTATGCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGAGCATTTGAGATTTTA
259 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* * * * *
15254271 CGGGTTTGTTGCCAATAGCCATTAAAGTGTTTGAAGTGGGGACACTTTTTTCAAATGGTCACAAA
324 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* ***
15254336 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGGTGCACAACAACAAAAATACAAGGATCAC
389 ATCTTGTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* ** *
15254401 GTCTACCAAGTTCGAGGTAAAAAATCCTTCTGAAAAAATTTTAAAAAATCCCGAACCAG-AAAAA
453 GTCTACCAAGTTAG-GGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCAGAACC-GCAAAAA
* * *
15254465 GTTTTGAAAATCATGAAAAATAGAAAATGAGTCATCTTGCCATGAAACTTCATGTGAAGGCTTAA
516 GTTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
* *
15254530 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAAAATGAAGATGTGC
581 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGC
* * * * * *
15254595 CTATACCCACCTACCACCCTATTGATCAATGGCTTATGCATCCCGTCTCTCTGGCCGGCATAGTG
646 CTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTG
*
15254660 CCCGCCCGCCTGTCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAG
711 CCCGCCCGCCTG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAG
* * * * *
15254725 ATTGCACCGGACCAAGGGTTGTGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCTAACCGATCC
775 ATTGCACCAGACCAAGGGTTGTGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCAACCGATCC
* * * *
15254790 TCGGCTTACGCATCCCGACCCTCTTGCCGGCTGAGCACCCGCACGGTCATTTCGTG
840 CCGGCTTACGCATCCCGACCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTG
* *
15254846 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACAGAGTTCATTCTCAGTCTAAGA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA-AGAGTTCATTCCCAGTCTAAGA
* *
15254911 TCAGACCGGACCGAGGGTTGCGGTAGCACTTGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTT
65 TCAGACCGGACCGAGGGTTGCGGCAGCACTTGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTT
* * * * * *
15254976 CTTCACCGAGACACCATTGTCGGAGCATCACCAGAGAACCTGACCGGTTGCTTTAGGGTTCCAAC
130 CTTCATCGAGGCACCATCGTCGGAGCATCATCAGAGAACCTGACCGGTTGCTTTGGGGTTCCAGC
*
15255041 GATCGGGGGGGCCGTGGGGGTGTGCACACATGATGTGCGATGGGTGCTGATACTTGGCCCTTATA
195 GATCGGGGGGGCCG-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
15255106 TTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
259 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
15255170 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGCGGACACTTTTTTCAAATGGTCACAAA
324 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * * *
15255235 ATCTTTTACACTTCTAGTTTTTAGTTGAATTTTTTTGTGCTTGCCAACAAAGATACAAGGATCAT
389 ATCTTGTACACTTC-AGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * * *
15255300 GTCTACCAAGTTTGTGGCCAAAAATCCCTCTGAAAAAATTTTAAAAAATCCAGAACCGTAAAAGG
453 GTCTACCAAGTTAG-GGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAG
* * * *
15255365 TCTCGTAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAGCTTAAG
517 TTTCGAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
15255430 GGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
582 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCC
* * *
15255495 TAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTAGCCAGCGTAGTGC
647 TAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGC
* * *
15255560 CCGCCTGTCTGCCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGT
712 CCGCC---C-GCCTGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCT
15255625 AAG
772 AAG
15255628 CATACGGAGT
Statistics
Matches: 1481, Mismatches: 185, Indels: 26
0.88 0.11 0.02
Matches are distributed among these distances:
897 53 0.04
898 351 0.24
899 922 0.62
900 101 0.07
902 2 0.00
903 52 0.04
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (895 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAAGAGTTCATTCCCAGTCTAAGAT
CAGACCGGACCGAGGGTTGCGGCAGCACTTGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTC
TTCATCGAGGCACCATCGTCGGAGCATCATCAGAGAACCTGACCGGTTGCTTTGGGGTTCCAGCG
ATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
TACCAAGTTAGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCCAGAACCGCAAAAAGTTTC
GAAAATCATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAAAATGAAGATGTGCCTAAA
CCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
CCGCCTGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGCA
CCAGACCAAGGGTTGTGGCAGCAAGATCGGCAGCACGCAGAGGGGGACCCAACCGATCCCCGGCT
TACGCATCCCGACCCTCTGGCCGACTGAGCACCCGCACGCTCATTTCGTG
Found at i:15254888 original size:26 final size:26
Alignment explanation
Indices: 15254859--15254909 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15254849 TGACTTAGGC
*
15254859 ATACGGAGTTCATTCCCAGTCTAAGT
1 ATACAGAGTTCATTCCCAGTCTAAGT
*
15254885 ATACAGAGTTCATTCTCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTCTAAG
15254910 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.22, G:0.18, T:0.31
Consensus pattern (26 bp):
ATACAGAGTTCATTCCCAGTCTAAGT
Found at i:15255637 original size:26 final size:26
Alignment explanation
Indices: 15255601--15255653 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15255591 GTTGGCTTAG
*
15255601 GCATACGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15255627 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15255653 G
1 G
15255654 ATTAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15256280 original size:743 final size:740
Alignment explanation
Indices: 15254839--15256366 Score: 2315
Period size: 743 Copynumber: 2.1 Consensus size: 740
15254829 CGCACGGTCA
* * *
15254839 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGTATACAGAGTTCATTCTCAG
1 TTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* *
15254904 TCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACTTGCTGGGCTCAGGCATGTGCTGGTGTCG
66 TCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACTTGCTAGGCTCAGGCATGTGCTGGTGTCG
* *
15254969 CATTTTTCTTCACCGAGACACCATTGTCGGAGCATCACCAGAGAACCTGACCGGTTGCTTTAGGG
131 CATTTTTCTTCACCGAGACACCATCGTCGGAGCATCACCAGAGAACCTCACCGGTTGCTTTAGGG
15255034 TTCCAACGATCGGGGGGGCCGTGGGGGTGTGCACACATGATGTGCGATGGGTGCTGATACTTGGC
196 TTCCAACGATCGGGGGGGCCGTGGGGGTGTGCACACATGATGTGCGATGGGTGCTGATACTTGGC
*
15255099 CCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAG
261 CCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
*
15255164 ATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTATGAAATGCGGACACTTTTTTCAAATGGT
326 ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATGAAATGCGGACACTTTTTTCAAATGGT
* * * * *
15255229 CACAAAATCTTTTACACTTCTAGTTTTTAGTTGAATTTTTTTGTGCTTGCCAACAAAGATACAAG
391 CACAAAATCTTGTACACTTCTACTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAGATACAAG
* * * * * **
15255294 GATCATGTCTACCAAGTTTGTGGCCAAAAATCCCTCTGAAAAAATTTTAAAAAATCCAGAACCGT
456 GATCACGTCTACCAACTTTGGGGCCAAAAATCCCTCCGAAAAAATTTAAAAAAATCCAGAACCAC
* *
15255359 AAAAGGTCTCGTAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAAG
521 AAAAGGTCTCGTAAATCATGAAAAATAAAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAAG
15255424 CTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
586 CTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
* *
15255489 TGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGTGCATCCCGTCTCTCTAGCC-AGC
651 TGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGA-C
15255553 GTAGTGCCCGCCTGTCTGCCCG-CTCGCTCG
715 GTAGTGCCCGCC---C-GCCCGCCT-GCTCG
* * *
15255583 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGCATACGGAGTTCATTCCCAG
1 TTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
* * *
15255648 TCTAAGATTAGATCGGACCGAGTGTTGCGGCAGCACTTGCTAGGCTCAGGCATGTGCTGGTG-CT
66 TCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACTTGCTAGGCTCAGGCATGTGCTGGTGTC-
* * * * * * *
15255712 GCATTTTTCTTCATCGGGGCACCATCGTCTGAGCATCACCGGAGACCCTCACCGGTTGCTTTGGG
130 GCATTTTTCTTCACCGAGACACCATCGTCGGAGCATCACCAGAGAACCTCACCGGTTGCTTTAGG
** * *
15255777 GTTCCGGCGATCGGGGGGGTCG-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGG
195 GTTCCAACGATCGGGGGGGCCGTGGGGGTGTGCACACATGATGTGCGATGGGTGCTGATACTTGG
15255841 CCCTTATATT-GCCGCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
260 CCCTTATATTGGCC-CCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTG
* *
15255905 AGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
324 AGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATGAAATGCGGACACTTTTTTCAAATG
15255970 GTCACAAAATCTTGTACACTT-TGACTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAGAA-ATA
389 GTCACAAAATCTTGTACACTTCT-ACTTTTTAGCTGAAGTTTTTTGTGCATGCCAACA-AAGATA
** * *
15256033 CAAGGATCACGTCTACCAACTTTGGGGGTAAAACTCCTTCCGAAAAAATTTAAAAAAATCCCA-A
452 CAAGGATCACGTCTACCAACTTTGGGGCCAAAAATCCCTCCGAAAAAATTTAAAAAAAT-CCAGA
* * *
15256097 ATCACAGAAA-GTTTCG-AGAATCGTGAAAAATAAAAAACGAGTCGTATTGCCATGAAACTTCAC
516 ACCACA-AAAGGTCTCGTA-AATCATGAAAAATAAAAAACGAGTCGTATTGCCATGAAACTTCAC
* * *
15256160 GTG-AAGCTTTTAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
579 GTGAAAGC-TTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
*
15256224 TATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCAC-GATTTGCGCATCCCGTCTCTC
643 TATGAAGATGTACCTAAACCCACCTACCACCCTATCGATCCACAG-CTTGCGCATCCCGTCTCTC
* *
15256288 TGGCCGACGTAGTGCCCGCCCGCCCGCCTGTTCG
707 TAGCCGACGTAGTGCCCGCCCGCCCGCCTGCTCG
*
15256322 TTTCGTCGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCTAAG
1 TTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG
15256367 ATTGGATCGA
Statistics
Matches: 713, Mismatches: 60, Indels: 27
0.89 0.08 0.03
Matches are distributed among these distances:
739 51 0.07
740 3 0.00
742 10 0.01
743 449 0.63
744 200 0.28
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.27
Consensus pattern (740 bp):
TTTCGTCGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTCATTCCCAG
TCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACTTGCTAGGCTCAGGCATGTGCTGGTGTCG
CATTTTTCTTCACCGAGACACCATCGTCGGAGCATCACCAGAGAACCTCACCGGTTGCTTTAGGG
TTCCAACGATCGGGGGGGCCGTGGGGGTGTGCACACATGATGTGCGATGGGTGCTGATACTTGGC
CCTTATATTGGCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAG
ATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTATGAAATGCGGACACTTTTTTCAAATGGT
CACAAAATCTTGTACACTTCTACTTTTTAGCTGAAGTTTTTTGTGCATGCCAACAAAGATACAAG
GATCACGTCTACCAACTTTGGGGCCAAAAATCCCTCCGAAAAAATTTAAAAAAATCCAGAACCAC
AAAAGGTCTCGTAAATCATGAAAAATAAAAAACGAGTCGTATTGCCATGAAACTTCACGTGAAAG
CTTAAGGGACCATTGTATCAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGA
TGTACCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTAGCCGACG
TAGTGCCCGCCCGCCCGCCTGCTCG
Found at i:15257402 original size:26 final size:26
Alignment explanation
Indices: 15257373--15257425 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15257363 GTTGACTTAC
15257373 GCATACGGAGTTCATTGCC-AGTCTAA
1 GCATACGGAGTTCATT-CCTAGTCTAA
15257399 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15257425 G
1 G
15257426 ATCCGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15258325 original size:26 final size:26
Alignment explanation
Indices: 15258289--15258341 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15258279 GTCGACTTAG
* *
15258289 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
15258315 GCATACAGAGTTCAATCCCAGTCTAA
1 GCATACAGAGTTCAATCCCAGTCTAA
15258341 G
1 G
15258342 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCAATCCCAGTCTAA
Found at i:15258641 original size:916 final size:902
Alignment explanation
Indices: 15256499--15266676 Score: 11582
Period size: 916 Copynumber: 11.3 Consensus size: 902
15256489 GTTGACTTAG
* * *
15256499 GCATACAGAGTTCATTCCCAGACTAAGATCGGA-TCGGACTGAAGGTTGCGGTAGCACATGTTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACT-GGACTGAGGGTTGCGGTAGCACATGCTGG
* * *
15256563 GCTCAGGCATGTGCTGGTGCCGTATTTTGCTTCGCCGGGGCACCA---TC---G---C-T-GGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * * * *
15256617 CACCTGACCCGACGACATTGGGGTTCTGACGATCGGGGGGGCCAAGGGGGGGTGTGTGCCCATGA
130 AACCTGA-CCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC---GGGGGGTGTGCGCACATGA
* *
15256682 TGTGCGATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAGCTCGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
15256747 TCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGCTTGCTGCCAGTAGCCATTAAAGTGTCTA
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* * * *
15256812 AAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTGT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
* *
15256877 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGTCAAAACTCCTTTCGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
15256942 AAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATCGTGAAAAACAGAAAATGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
15257007 TCTTGCCTTGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
15257072 GGCATTGGCATGAAAAAATAAGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACT
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * *
15257137 TGCGCATCCCGTCTCTCTAGCCGGCGTAGGGCCCGCCCGCCCGCTCGCCCGCCTGCTCGTTTCGT
646 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC-CG--C-CC-GCTCATTTCGT
* * * * * *
15257202 CGGTTGGCTTTGGCGTACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGC-AGC
706 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-C
* *
15257266 AGCAGGATC-AGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACATGCGCATCCCACCCCTCT
770 AGCAGGATCGA-CAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCC-GCCCTCT
* * * *
15257330 GGCCGGGTGAGCGCCCGTACGCT-TGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTGCCAG
833 GGCCGGCTGAGCGCCCGCACGCTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG
15257394 TCTAA
898 TCTAA
* * * * * * *
15257399 GCATACGGAGTTCATTCCTAGTCTAAGATCCGACCGGACTGAGGGTTGCGGCAGCAGATGCTGGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGG
* * *
15257464 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCGCCGGAGCATTGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
15257529 ACCTGA-TGGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCTGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGG-CGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
15257592 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAAGTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15257657 CTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15257722 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGAAGTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* **
15257787 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAACTTTGGGGGTAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * * * *
15257852 AATTTAAAAAAATCCCAAATCGCAGAAAGTTTCGAGAATCGTGAAAAATAAAAAACGAGTCGTAT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15257917 TGCCATGAAACTTCACGTGAA-GCTTTTAGGGAGCATTGTATGAATTTACAAGCCATAAAAATGG
519 TGCCATGAAACTTCACGTGAAGGC-TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15257981 CATTGGCATGCAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCAATGGCTT
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCC-ACGGCTT
* * * * * * *
15258046 GCACCAATCCTGTTTCCCTGGATTCGACGTAATGCCCGCCCGCCCG-C-ACCGCTCATCTTCGTC
647 GC-GC-ATCCCGTCTCTCTGG--CCGACGTAGTGCCCGCCCGCCCGCCGCCCGCTCAT-TTCGTC
* *
15258109 GGTTGGCTTAGGTATGCGGGAGTTCATTCCCAGTCTACAGATTCGGACCAGACCGAGGGTTGCCG
707 GGTTGGCTTAGGCATAC-GGAGTTCATTCCCAGTCTA-AGA-TCGGACCAGACCGAGGGTTG-CG
* * * * * * *
15258174 ACAGCAAGATCGGCAGCCATGCAGAGGGGGACGTCAGTCGATCCCCAGGCTTGCCAACATCCCGC
768 ACAGCAGGATCGACAG-CACGCAGAGGGGGAC-CCGGTCGATCCCC-GACTTG-C-GCATCCCGC
* ** ** * *
15258239 CTTCTACCCGTATTGATGCGCTCGCAC-CTCTGTTTCGTGGGTCGACTTAGGCATACGGAGTTCA
828 CCTCTGGCCG-GCTGA-GCGCCCGCACGCTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCA
15258303 TTCCCAGTCTAA
891 TTCCCAGTCTAA
* * * *
15258315 GCATACAGAGTTCAATCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCAGTAGCACATCCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGG
* * * * **
15258380 TTCAGGCATGTGCTGGTGCCTCATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCACCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * * * *
15258445 ACTTGACCGGCTACATTGGGGTTTCGGCGACCGGGGGGGCCGGGGGGTGTGCGCCCATGAAGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * * * *
15258510 AATCGGTACTGGTACTTGGCCCTTATATTGGCACCCTATCCCTCATCAAACCTCAAGAACTCACG
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
15258575 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTGGCCATTAAAGTGTCTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
15258640 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
15258705 GCATGCCAACAAAAATACAAGGATCATGTATACTAAGTTTGGGGCCAAAAATCCTTTCGAAAAAA
391 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * *
15258770 GTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
456 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
15258835 CTATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
521 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * *
15258900 TGGCATGAAAAAATAAGAATATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCGC
586 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * *
15258965 ATCCCGTCTCTCTAGCCGGCGTAG-GGCCGCCCGCCCGCTCGCCCGCCTGCTCGTTTCGTCGGTT
651 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC-CG--C-CC-GCTCATTTCGTCGGTT
* * * * * *
15259029 GGCTTTGGCGTACGGAGTTCATTCCTAGTCTAAGATCAGATCGGACCGAGGGTTGC-AGCAGCAG
711 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGA-CAGCAG
* *
15259093 GATC-AGCAGCACGCAGAGGGGGACCCGGTCGATCCCCGACATGCGCATCCCACCCCTCTGGCCG
775 GATCGA-CAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCC-GCCCTCTGGCCG
* * * *
15259157 GGTGAGCGCCCGTACGCT-TGTTTCGTGGGTTGACTTACGCATACGGAGTTCATTGCCAGTCTAA
838 GCTGAGCGCCCGCACGCTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
15259221 GCATACGGAGTTCATTCCTAGTCTAAGATCCGACCGGACTGAGGGTTGCGGCAGCAGATGCTGGA
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGG
* * *
15259286 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACTATCGCCGGAGCATTGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
15259351 ACCTGA-TGGACGGCATTGGGGTTCCGGCGATC-GGGGGGCCTGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGG-CGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
15259414 GCAATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCATCATCAAACCTCGAGAAGTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15259479 CTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGGCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
15259544 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* * **
15259609 GTGCATGCCAGCAAAAATACAAGGATCACATCTACCAAGTTTATGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
15259674 AATTTTAAACAATCCAGAACCGCAAAGAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCATCT
454 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * * *
15259739 TGCCATGAAACTTCATGCGAAGGCTTAAGGGAGCACTGTATGAATTTACAAGCCATAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** * * *
15259804 ATTGGCACACAGAAATATGAAGATGTACCTAAACCCACCTACCACACTATCGATCCACGGCTTGT
584 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
15259869 GCATCCTGTCTCTCTGGCCGACGTAGTGCCCGACCGCCCGCCTGCCCGCCCGCTCAATTT-GTCG
649 GCATCCCGTCTCTCTGGCCGACGTAGTG--C--CCGCCCGCCCG-CCGCCCGCTC-ATTTCGTCG
* * * * * *
15259933 GTTGGCTTAGGCATATGGAGTTCATTCCCAGCCTAAGATTGGACCGGACCAAGGGTTACGACAGC
708 GTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGC
** * * *
15259998 AGGATCGACAGCACGCAGAGGGGGACCCGACCAATCCCCGACTTGCGCATCCCGCCCCTCCGGTC
773 AGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCG-CCCTCTGGCC
* *
15260063 GGCTGAGCACCCGCACGCT-TGTTTCGCGGGTTGACTTAGGCATACGGAGTTCATT-CCAG--T-
837 GGCTGAGCGCCCGCACGCTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
15260123 -
902 A
* * *
15260123 -C-T--A-AG---------A-TC--AGATCGGA-T----TGAGGGTTCCAGTAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGG
** * * *
15260166 CTTGGGCATGTTCTGGTG-CACATTTTTTTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * **
15260230 ACCTGACCGACGGCATTAGGGTTCCTGTGATTGGGGGGACGGGGGAGGGGGTGTGCGCACATGAT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGA-TCGGGGG--GGCCG-GGGGGTGTGCGCACATGAT
* *
15260295 GTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACCTTGAGAAC
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAAC
* *
15260360 TTACACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
15260425 AAAT-GGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACCTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
* * *
15260488 TTT-T-CATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTACGA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
** * **
15260551 AAAAATTTTAAAAAATCTTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
*
15260616 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAATTTACAAGCCATAAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* *
15260681 GGTATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCATC-GC
581 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA-CGGC
* * * * * * *
15260745 TTGCGGATCCTGTCTCTCTGGTCGACGTAGTGCCCGTCCGTCCACTCGCCCGTTCATTTCGTCGG
645 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGC-CGCCCGCTCATTTCGTCGG
* * * * **
15260810 TTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATCGGATCAGATCGAGGGTTGGGGTAGCA
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCA
* * * * * *
15260875 TGATCAACAGCACGCAGAGGGGGACCCGGTCGATCCTCGGCATGCGCATCCAGCCCCTCTGGCCG
774 GGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCG-CCCTCTGGCCG
* * *
15260940 GCTGACCGCCCGCACG-TTTGTTT-TTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
838 GCTGAGCGCCCGCACGCTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * * *
15261003 GCATAGGGAGTTCATTCCCAGTCTAAGATCGGACCGAAGC-GAGGGTTGCGGCAGCACATGCTGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGA-CTGAGGGTTGCGGTAGCACATGCTGG
* *
15261067 GCTCAGGCATGTGCTGGTCCCGTATTTTTCTTCGTCGGGGCACCA---T-----CA---TCGGAG
65 GCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * **
15261121 AACCTGACCGGCGGCATTGGGGTTTCGACGATCCGGGGGGTTGGGGAGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGG-GGTGTGCGCACATGATGT
* * * * * * *
15261186 GCGATGGGTGCTAGTACTTGGCCCTGATAGTGGCCACCTATCTCTCATCAAATCTCGAGAACACA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
15261251 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15261316 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* * * *
15261381 GTGCATGCTGAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTGCTACCAAAA
389 GTGCATGC-CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
15261445 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAATGAGTTGTC
453 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * *
15261510 TTGCCATGAAACTTTACGTAAAGGCTTACGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
518 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* **
15261575 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCGTGGCTTG
583 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * **
15261640 CGCATCCTGTTTCTCT-G--G-C---GTG--CG--GGCCCGTCG--CG-TCGTTTCGTCGGTTCT
648 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGCTCATTTCGTCGGTTGG
* * * * * **
15261691 CTTAGACATACGGAGTTCATTGCCAGTCTAACATCTGACCAGACCGAGGGTTGTGGTAGCAGGAA
713 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGG-A
** * * * * *
15261756 T-GGTAGCACGTAGAGGGGGACCTGG-CAAAT-CCCAACTTGAGCATCCCGCCCTCTGGCCGGCT
777 TCGACAGCACGCAGAGGGGGACCCGGTC-GATCCCCGACTTGCGCATCCCGCCCTCTGGCCGGCT
* *
15261818 GAGCGCCCGCACGCTC-GTTTCGTGAGTTGACTTCGGCATACGGAGTTCATTCCCAG--T--
841 GAGCGCCCGCACGCTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15261875 -C-T--A-AG---A-----A-TC--AGA-C---C-GGACCGA-GGTTGTGGTAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGG
* * * * * *
15261918 CTCGGGCATGTGCCTGTTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCGGAGCATCGCCAGAG
66 CTCAGGCATGTG-CTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * **
15261983 AACTTGACTGGCGGCATT-GGTTTCCGGCTTTCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGT
* * *
15262047 GTGATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCC-CATCAAAACCTCAAGAACTC
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC-AAACCTCGAGAACTC
* * * * *
15262111 ACACCCCCTTCAAGAGCATTTGAGATTTTACAGGCTTGTTGCCATTAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
15262176 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGATTTTT-GCTG-ATTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAG-TTTTTAGCTGAATTTTT
* ** * *
15262239 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGCACCAAAAATCCTTCCAAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
** * * *
15262304 AAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGT
452 AAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGT
* ** *
15262369 CTTGCCCTGAAACTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAGG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
15262434 GCATTGGCACGCAGAAATATGAAGATGTGTCTAAGCCCACTTACCACCCTATCGATCCACGGCTT
582 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *
15262499 GGGCATCCCGTCTCTCTGGCCGACGTAGT--------G--C-CCGCCCGCTCATTTCGTCGATTG
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGCTCATTTCGTCGGTTG
* * * * * * * * *
15262553 GCTTAGGCATACGAAATTCATTCCCTGTCTAAGATTGCACCAGACCGAGGTTTGTGGCAGCATGA
712 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGA
* * * * * * *
15262618 TCGATAGCACACAGAGGGAGACCCAGTCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCTGGCT
777 TCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCG-CCCTCTGGCCGGCT
* * *
15262683 GAGCGCCCGTACGCTC-GTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAAGTGTAA
841 GAGCGCCCGCACGCTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCC-AGTCTAA
* * * * * * ** * * *
15262745 CCATACGGAGTTCATTGCTAGTCTAAGATCCGACTGGACCGAGCATTACGGCAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGG
* *
15262810 -TCCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAT
66 CTCAG-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGA-
* * * * * *
15262874 AAACCTGACCGGTGGCGTTTGGGTTCCGACGATC-GGGGGGCC-GGGGGTGTGCGAACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
15262937 GCGATGGGTGCTGGTACTTAGG-CCTTACAATGGCCCCCTAT-CCTCATCAAACCTCGGGAACTG
194 GCGATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15263000 ACACCCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGA
258 ACA-CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* *
15263065 AA-CGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
322 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
* * *
15263129 TTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCTTCCTAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GA
* * *
15263194 AAAAATTTTAAAAAATCGCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCG
451 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* * *
15263259 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTAACGAATTTAAAAGCCATAAAAT
516 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT-ATGAATTTACAAGCCATAAAAA
*** * * *
15263324 TGGCATTGGCCCACAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGCTCCACGGC
580 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
** * * *
15263389 TTGCGCATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCTCGCCCGCCCGGCCGCTCGTTTCGTCGG
645 TTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCG-CCGCCCGCTCATTTCGTCGG
* * * ** **
15263454 TTGGCTTAGGCATACCGAGTTCATTCCCACTCTAAGATCGGACCAGATCGAGGGTTATGGTAGCA
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCA
* * * * ** * * *
15263519 GGATAGGCAGCACACAGAGGGGGACCCGGCCGATCCTTGGCTTGCGCATCGCGCCCCTCTGGCCT
774 GGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCG-CCCTCTGGCCG
* * * * **
15263584 ACTGAGTGCCCGCACCCTC-GTTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCCCAGAATAA
838 GCTGAGCGCCCGCACGCTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** *
15263648 GCATAC-GAAGTTCATTCCCAGTCTAAGATCAGA-TCGGACCAAGGGTTGCGATAGCACATGCTG
1 GCATACAG-AGTTCATTCCCAGTCTAAGATCGGACT-GGACTGAGGGTTGCGGTAGCACATGCTG
* *
15263711 GGCTCGGGCATGTGCTGGTGCCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGCCAG
64 GGCTCAGGCATGTGCTGGTG-CCGCATTTTTCTTCGTCGGGGCACCAT---C---G--TCG---G
* *
15263776 AGCATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGG-C-GGGGGTGTG
117 AGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTG
*
15263839 CGCACATAATGTGCGATGGGTGCTGGTACTTGGCCC-TATATTGG-CCCCTATCCCTCATCAAAC
182 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* * * *
15263902 CTCGAGAACTCACACCCCCTTCAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAATAGCAATTA
247 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
* *
15263967 AAGTGTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAG
312 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAG
* * * ***
15264032 CTGAATTTTTTTGTGCATACCAAAAAAAATACAAGGATCCCGTCTACCAAGTTTGTCCCCAAAAC
377 CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
* * * *
15264097 TCCTTCCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTTAAAAATCGTGAAAAAAAGAA
442 TCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAA
* * *
15264162 AACTAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTACGAATTTACAAGC
507 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
* **
15264227 CATGAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCCTATCG
572 CATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCA-CCCTATCG
* * *
15264292 ATCCACGGCTTGTGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGACCGCCCGCCTGCCCGCCCG
636 ATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTG--C--CCGCCCGCCCG-CCGCCCG
* * * * *
15264357 CTCAATTT-GTCGGTTGGCTTAGGCATATGGAGTTCATTCCCCAGCCTAAGATTGGACCGGACCA
696 CTC-ATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT-CCCAGTCTAAGATCGGACCAGACCG
* ** *
15264421 AGGGTTACCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCAATCCCCAGACTTGCGCA
759 AGGGTT-GCGACAGCAGGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCC-GACTTGCGCA
* * * *
15264486 TCCCGCCCCTCCGGTCGGCTGAGCACCCGCACGCT-TGTTTCGCGGGTTGACTTAGGCATACGGA
822 TCCCG-CCCTCTGGCCGGCTGAGCGCCCGCACGCTCTGTTTCGTGGGTTGACTTAGGCATACGGA
15264550 GTTCATTCCCAG--T--
886 GTTCATTCCCAGTCTAA
* * *
15264563 -C-T--A-AG---------A-TC--AGATCGGA-T----TGAGGGTTCCAGTAGCACATGCTAGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGG
** *
15264606 CTTGGGCATGTGCTGGTGCCACATTTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
66 CTCAGGCATGTGCTGGTGCCGCA-TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
** * * * **
15264671 AACCTGACCAACGGCATTAGGGTTCCGGTGATTGGGGGGACGGGGGAGGGGGTGTGCGCACATGA
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGA-TCGGGGG--GGCCG-GGGGGTGTGCGCACATGA
* *
15264736 TGTGCGATAGGTGCTGGTACTTGGCCCTTATA-TGGCCCCCTATCCCTCATCAAACCTTGAGAAC
191 TGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAAC
* * *
15264800 TTACACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTT
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
* *
15264865 AAATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
* * * * * * *
15264930 TTTATGCATG-CAAAAAAAATACAAGGATCACGTCTACAAAGCTTGGTGG-CAAAATTCCTTTCA
386 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTCCG
* * *
15264993 AAAAAATTTAAAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
450 AAAAAATTT-TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGT
*
15265058 CATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
514 CGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAA
* * * * *
15265123 ATGGCATTGCCATGCAGAAATGTGAAGATGTGACTAAACCCACCTACCACCCTGTCGATCCACGA
579 ATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGG
* * * *
15265188 CTTGCGCATCCCGTCTCTCTGGCCGATGTAGT----GCCCG--C-CTGCCAGCTCGTTTCGTCGG
644 CTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGCTCATTTCGTCGG
** * * * * * * *
15265246 TTGGCTTAGGCATGTGGAGTTCATTCCTAGTCTAAGATCAGAACGGACCAAGGGTTGCAATAGCA
709 TTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCA
** * * *
15265311 GGATCGACAGCACATAGAGTGGGACCCGGTCGATCCCCGACTTGCTCATCCTAC-CCCTCTGGCT
774 GGATCGACAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCC--CGCCCTCTGGCC
* * **
15265375 GGTTGAGCGCCCGCATGCTC-GTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTA
837 GGCTGAGCGCCCGCACGCTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTA
15265439 A
902 A
* * **
15265440 GTATACGGAGTTCATTCATAGTCTAAGTATACGGAGTTCATTCGTAGTCTAAGATCAAACTGGAT
1 GCATACAGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A--C-T-G-----G-----AC----T
*
15265505 CGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCCAGCATTTTTC-TCGTCGG
41 -GAGGGTTGCGGTAGCACATGCTGGGCTCAGGCATGTGCTGGTG-CC-GCATTTTTCTTCGTCGG
* ** * *
15265569 GGCATCAATCGTCGGAGCATCACCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGA
103 GGCA-CCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG-
* * * *
15265634 GGGCCCGGAGGGGGGTGTGCGCACAATGAATGTGCAATGGGTGCTCGTAC-TGG-CCTTATATAG
166 GGGGCC---GGGGGGTGTGCGCAC-ATG-ATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
*
15265697 GCCCCCTATCCCTCATCAAACCTCGAGAAACACACACCCCCTTAAAGAGCATTTGAGATTTTACA
226 GCCCCCTATCCCTCATCAAACCTCGAG-AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
15265762 AGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTAATGGGGACACTTTTTTCAAATGGTCACAAAAT
290 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * *
15265827 -TTGTACACTTTGAGTTTTTGGCTGAATTTTTTTATGCATGCCAACAAAGAAAACAAGGGTCACG
355 CTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAA-AATACAAGGATCACG
* * * * *
15265891 TCTAGCAAGTTTGGGGCCAAAACGCCTTCCAAAAAAATTTAAAAAAATCTCGAACCGCAAAAAGT
419 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGT
* *
15265956 TTCAAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCAATGAAACTTCATGTGAAGGCTTAAG
484 TTC-AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* *
15266021 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCGTGCAGCCAAAATATGAAAATGT
548 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAG---AAATATGAAGATGT
* * * * *
15266086 GCCTAAACCCACCTACCA-CCTATTGATCAACGGGCTTTTGCGCATCCCGTCTCTATGGGTCGGG
610 GCCTAAACCCACCTACCACCCTATCGATCCAC-GGC--TTGCGCATCCCGTCTCTCT-GG-CCGA
* * * * * * *
15266150 CGTAGTGCCCTCCCCGCCCGCCCGCCCACCGTCGTTTAGTCGATTGCGCTTAGGCATAC-AAATT
670 CGTAGTGCCC-GCCCGCCCG-CCGCCC-GC-TCATTTCGTCGGTTG-GCTTAGGCATACGGAGTT
* * * * * * * *
15266214 CATTCCCAGTCCACAGATCGTGATCAGATCGAGGGTT-CTAATAG-TGGAATCGGCAGCAC-C-T
730 CATTCCCAGTCTA-AGATCG-GACCAGACCGAGGGTTGC-GACAGCAGG-ATCGACAGCACGCAG
* * * * * * *
15266275 ATGGGGACCC-GTCGAT-ACCGGCTTGCGCCTCTTCGCCCCATCT-GTCGACCTGAGCGCACCGC
791 AGGGGGACCCGGTCGATCCCCGACTTGCGCATC-CCG-CCC-TCTGGCCG-GCTGAGCGC-CCGC
** ** * *
15266337 GGGGAAAAACGCTCCATTTC-AAGGTTGACATGGGCATACGGAGTTCATTCCCAGTCTAA
851 --------ACGCTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** * * *
15266396 GCATATAGAGTTCATTCCCAATCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGG
* **
15266461 CTCGGGCATGTGCTGGTG-C-CATATTTTCTTCGTCGGGGCACCATCACCGGAGCATCGTCGGAG
66 CTCAGGCATGTGCTGGTGCCGCAT-TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* *
15266524 AACCTGACCGGTGGCATTGGGGTTCTGGCGATC-GGGGGGCC--GGGG-GTGCGCACATGATGT-
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
15266584 -GATGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15266648 ATCCCCTTAAAGAGCATTTGAGATTTTAC
260 ACCCCCTTAAAGAGCATTTGAGATTTTAC
15266677 NNNNNNNNNN
Statistics
Matches: 7920, Mismatches: 1012, Indels: 676
0.82 0.11 0.07
Matches are distributed among these distances:
850 32 0.00
851 32 0.00
852 1 0.00
855 1 0.00
856 3 0.00
858 2 0.00
859 5 0.00
860 258 0.03
861 194 0.02
862 33 0.00
863 85 0.01
864 17 0.00
865 63 0.01
866 2 0.00
867 4 0.00
868 1 0.00
870 1 0.00
871 2 0.00
872 1 0.00
873 72 0.01
874 39 0.00
875 97 0.01
876 234 0.03
877 88 0.01
878 7 0.00
879 65 0.01
880 298 0.04
881 10 0.00
882 79 0.01
883 102 0.01
884 78 0.01
885 17 0.00
886 3 0.00
887 4 0.00
888 228 0.03
889 467 0.06
890 215 0.03
891 166 0.02
892 428 0.05
893 70 0.01
894 3 0.00
895 6 0.00
896 1 0.00
897 11 0.00
898 9 0.00
900 99 0.01
901 3 0.00
902 38 0.00
903 91 0.01
904 203 0.03
905 16 0.00
906 668 0.08
907 624 0.08
908 26 0.00
909 32 0.00
910 71 0.01
911 123 0.02
912 255 0.03
913 177 0.02
914 87 0.01
915 68 0.01
916 712 0.09
917 85 0.01
918 39 0.00
919 82 0.01
920 4 0.00
924 2 0.00
925 59 0.01
926 81 0.01
927 126 0.02
928 158 0.02
929 148 0.02
930 42 0.01
931 10 0.00
932 31 0.00
934 18 0.00
935 4 0.00
936 7 0.00
940 1 0.00
941 4 0.00
943 1 0.00
944 1 0.00
945 16 0.00
946 12 0.00
947 46 0.01
948 22 0.00
949 28 0.00
954 1 0.00
955 2 0.00
956 59 0.01
957 4 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (902 bp):
GCATACAGAGTTCATTCCCAGTCTAAGATCGGACTGGACTGAGGGTTGCGGTAGCACATGCTGGG
CTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCGCCCGCTCATTTCGTCGGTTGGCTT
AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGACAGCAGGATCGA
CAGCACGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGCATCCCGCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15259224 original size:26 final size:26
Alignment explanation
Indices: 15259195--15259247 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15259185 GTTGACTTAC
15259195 GCATACGGAGTTCATTGCC-AGTCTAA
1 GCATACGGAGTTCATT-CCTAGTCTAA
15259221 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCTAGTCTAA
15259247 G
1 G
15259248 ATCCGACCGG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCTAGTCTAA
Found at i:15261013 original size:26 final size:26
Alignment explanation
Indices: 15260977--15261029 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15260967 GTTGACTTAG
15260977 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15261003 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15261029 G
1 G
15261030 ATCGGACCGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15265452 original size:26 final size:26
Alignment explanation
Indices: 15265416--15265492 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
15265406 TGACTTAGGC
15265416 ATACGGAGTTCATTCATAGTCTAAGT
1 ATACGGAGTTCATTCATAGTCTAAGT
15265442 ATACGGAGTTCATTCATAGTCTAAGT
1 ATACGGAGTTCATTCATAGTCTAAGT
*
15265468 ATACGGAGTTCATTCGTAGTCTAAG
1 ATACGGAGTTCATTCATAGTCTAAG
15265493 ATCAAACTGG
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.34
Consensus pattern (26 bp):
ATACGGAGTTCATTCATAGTCTAAGT
Found at i:15266399 original size:26 final size:26
Alignment explanation
Indices: 15266370--15266422 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15266360 GTTGACATGG
* *
15266370 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
15266396 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15266422 G
1 G
15266423 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15267982 original size:26 final size:26
Alignment explanation
Indices: 15267931--15267983 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15267921 CCGGTTTGAT
* *
15267931 CTTAGATTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15267957 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15267983 C
1 C
15267984 CCATGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15268873 original size:26 final size:26
Alignment explanation
Indices: 15268834--15268910 Score: 145
Period size: 26 Copynumber: 3.0 Consensus size: 26
15268824 CCAGTTTGAT
*
15268834 CTTAGACTACGAATGAACTCCGTATA
1 CTTAGACTATGAATGAACTCCGTATA
15268860 CTTAGACTATGAATGAACTCCGTATA
1 CTTAGACTATGAATGAACTCCGTATA
15268886 CTTAGACTATGAATGAACTCCGTAT
1 CTTAGACTATGAATGAACTCCGTAT
15268911 GCCTAAGTCA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.30
Consensus pattern (26 bp):
CTTAGACTATGAATGAACTCCGTATA
Found at i:15269609 original size:921 final size:924
Alignment explanation
Indices: 15267941--15269782 Score: 2575
Period size: 921 Copynumber: 2.0 Consensus size: 924
15267931 CTTAGATTGG
* * * * * *
15267941 GAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCCATGTCAACCTATGAAACGAG
1 GAATGAACTCCATATACTTAGACTAGGAATGAACTCCGTATGCCCAAGTCAACCCACGAAACGAG
* ** * *
15268006 CGTGCGGGCGCTCAGTCGACCAGATGGGCGAGAGGCGCAAGCCGAGTATCGACCGGGTCCCCCAT
66 CATGCGGGCGCTCAACCGACCAGATGGGCGAGAGGAGCAAGCCGAGGATCGACCGGGTCCCCCAT
* * * *
15268071 AGGTGCTGCCGATCCTACTATTAGAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAATTCT
131 AGGTGCTGCCGATCCTACTATTAGAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCC
** * * * *
15268136 GTATGCCTAAGCCAATCGACGAAACGAGTGGGCGGGCGGGCGGGAGGGCACTACGCCGACCATAG
196 ACATGCCTAAGCCAACCGACGAAACGA---GGCGGGCAGGC--G-GGGCACTACACCGACCAGAG
* * *
15268201 AGACGGGATGCGCAAGCCGTGGATCAATAAGGTGGTAGGTGGGTTTAGGCACATTTTCATATTTT
255 AGACGGGATGCGCAAGCCGTGGATCAACAAGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTT
15268266 CTGCACGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGA
320 CTGCACGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGA
* * *
15268331 AGTTTCATTGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTGAAACTTTTTGCGGTTCGAG
385 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTGAAACCTTTTACGGTTCGAG
* *
15268396 ATTTTTTAAAATTTTTTTGGAAGGCGTTTTGGCCCCAAACTTGCTAGACGTGACCCTTGTTTTCT
450 ATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGCTAGACGTGACCCTTGTTTTCT
15268461 TGTTGGCATGCATAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAATTTTGTGACCATTTGAAA
515 TGTTGGCATGCATAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAATTTTGTGACCATTTGAAA
* * *
15268526 AAAGTGTCCCCATTACAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAATCTCAAATGCTC
580 AAAATGTCCCCATTACAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCGCAAATGCTC
** * * *
15268591 TTTAAGGGGGTGTGTGTTCTCGAGGTTTGATGAGGGATAGGGGCCTATATAAGGGCCAAGTACGA
645 TTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCA
* * * **
15268656 GCACCCATTGCACATCATGTGCGCACACCCCCTCGGCCC-T-CCCGATCGTCGGAACCCCAATGC
710 GCACCCATCGCACATCATGTGCGCACACCCCCTC-CCCCGTCCCCAATCACCGGAACCCCAATGC
* **
15268719 CGCCGGTCAGGTTCTCTGGTGATGCTCCGACGATGATGCCCCGACGAAGAAAAATGCGGCACCAG
774 CGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGATGCCCCGACGAAGAAAAATGCGGCACCAG
* * *
15268784 CACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCC-AGTTTGATCTTAGACTACGAAT
839 CACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCAATCCGA-TCTGATCTTAGACTACGAAT
15268848 GAACTCCGTATACTTAGACTAT
903 GAACTCCGTATACTTAGACTAT
* * *
15268870 GAATGAACTCCGTATACTTAGACTATGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
1 GAATGAACTCCATATACTTAGACTAGGAATGAACTCCGTATGCCCAAGTCAACCCACGAAACGAG
* * *
15268935 CATGCGGGCGCTCAACC-AGCCAGA-GGG-GTAGGATGAGCAAGTCGGGGATCGACCGGGTCCCA
66 CATGCGGGCGCTCAACCGA-CCAGATGGGCG-A-GAGGAGCAAGCCGAGGATCGACCGGGTCCC-
* * * * * * *
15268997 CTC-TATGTGCTGTCGATCCTGCTATT-GCAACCCTTGGTCCGTTCTGATCTTAGACTAGGAATG
127 C-CATAGGTGCTGCCGATCCTACTATTAG-AACCCTCGATCCGATCCGATCTTAGACTAGGAATG
* * *
15269060 AACTCCACATGCCTAAGCCAACCGACGAAACGA-GCTGGCAGGC-GGGCACTACATCGGCCAGAG
190 AACTCCACATGCCTAAGCCAACCGACGAAACGAGGCGGGCAGGCGGGGCACTACACCGACCAGAG
* * * *
15269123 AGACGGGATGCGCAAGTCGTGGATCGACAGGGTGGTAGGTGGGTTTAGTCACATCTTCACA-TTT
255 AGACGGGATGCGCAAGCCGTGGATCAACAAGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTT
* * *
15269187 CTGCATGGCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGA
320 CTGCACGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGA
* *
15269252 AGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA-TTTTTGAAACCTTTTACGGTTCGGG
385 AGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTGAAACCTTTTACGGTTCGAG
* *
15269316 ATTTTTT-AAATTTTTTTGAAAGGAGTTTT-GCCACCAAGCTTTG-TAGACGTGATCCTTGTATT
450 ATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCC-CCAAAC-TTGCTAGACGTGACCCTTGT-TT
* * *
15269378 T-TTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTT
512 TCTTGTTGGCATGCATAAAAAAATTCAGCCAAAAACTCAAAGTGTACAA-ATTTTGTGACCATTT
15269442 GAAAAAAATGTCCCCATTTA-AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCGCAAA
576 GAAAAAAATGTCCCCA-TTACAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCGCAAA
15269506 TGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAA
640 TGCTCTTTAAGGGGGTGTAAGTTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAA
*
15269571 GTACCAGCACCTATCGCACATCATGTGCGCACACCCCCTCCCCCGTCCCCCCAATCACCGGAACC
704 GTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCCCCCGT--CCCCAATCACCGGAACC
* * * *
15269636 CTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGTG
767 CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGATGCCCCGACGAAGAAAAATGCG
* * *
15269701 GCACCAGCACATGCCCAAGCCTAGCATGTGCTACTGGAACCCTCAATCCGATCTGATCTTAGACT
832 GCACCAGCACATGCCCAAGCCCAGCATGTGCTACCGCAACCCTCAATCCGATCTGATCTTAGACT
**
15269766 GGGAATGAACTCCGTAT
897 ACGAATGAACTCCGTAT
15269783 GCCTAAGTCA
Statistics
Matches: 808, Mismatches: 88, Indels: 39
0.86 0.09 0.04
Matches are distributed among these distances:
918 3 0.00
919 84 0.10
920 151 0.19
921 162 0.20
922 70 0.09
924 143 0.18
925 1 0.00
926 8 0.01
927 1 0.00
928 5 0.01
929 101 0.12
930 78 0.10
931 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (924 bp):
GAATGAACTCCATATACTTAGACTAGGAATGAACTCCGTATGCCCAAGTCAACCCACGAAACGAG
CATGCGGGCGCTCAACCGACCAGATGGGCGAGAGGAGCAAGCCGAGGATCGACCGGGTCCCCCAT
AGGTGCTGCCGATCCTACTATTAGAACCCTCGATCCGATCCGATCTTAGACTAGGAATGAACTCC
ACATGCCTAAGCCAACCGACGAAACGAGGCGGGCAGGCGGGGCACTACACCGACCAGAGAGACGG
GATGCGCAAGCCGTGGATCAACAAGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTTCTGCAC
GCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTC
ATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTTGAAACCTTTTACGGTTCGAGATTTTT
TAAAATTTTTTTGAAAGGAGTTTTGGCCCCAAACTTGCTAGACGTGACCCTTGTTTTCTTGTTGG
CATGCATAAAAAAATTCAGCCAAAAACTCAAAGTGTACAAATTTTGTGACCATTTGAAAAAAATG
TCCCCATTACAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCGCAAATGCTCTTTAAG
GGGGTGTAAGTTCTCAAGGTTTGATGAGGGATAGGGGCCAATATAAGGGCCAAGTACCAGCACCC
ATCGCACATCATGTGCGCACACCCCCTCCCCCGTCCCCAATCACCGGAACCCCAATGCCGCCGGT
CAGGTTCTCCGACGATGCTCCGACGATGATGCCCCGACGAAGAAAAATGCGGCACCAGCACATGC
CCAAGCCCAGCATGTGCTACCGCAACCCTCAATCCGATCTGATCTTAGACTACGAATGAACTCCG
TATACTTAGACTAT
Found at i:15273326 original size:26 final size:26
Alignment explanation
Indices: 15273290--15273342 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15273280 TCGGTCCGAT
15273290 CTTAGACTGGGAATGAACACCCTATG
1 CTTAGACTGGGAATGAACACCCTATG
* *
15273316 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCCTATG
15273342 C
1 C
15273343 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.23, G:0.25, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCCTATG
Found at i:15275091 original size:26 final size:26
Alignment explanation
Indices: 15275062--15275114 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15275052 CCGGTCGGAT
15275062 CTTAGACTAGG-AATGAACTCCGTATG
1 CTTAGACT-GGTAATGAACTCCGTATG
15275088 CTTAGACTGGTAATGAACTCCGTATG
1 CTTAGACTGGTAATGAACTCCGTATG
15275114 C
1 C
15275115 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGTAATGAACTCCGTATG
Found at i:15276003 original size:26 final size:26
Alignment explanation
Indices: 15275967--15276019 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15275957 CCAGTCCGAT
* *
15275967 CTTAGACTGGGATTGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15275993 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15276019 C
1 C
15276020 CTAAGTCGAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15276935 original size:899 final size:899
Alignment explanation
Indices: 15272437--15280554 Score: 10252
Period size: 899 Copynumber: 9.1 Consensus size: 899
15272427 CCGGTCTGAT
* *
15272437 CTTAGACTGGGAATGAACTCCGTATGCCGAAGTCAACTCACGAAACGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** * ** * *
15272502 CGGCCAGAGGGGCGGGATGCTCAAGTTGGGGATTTG-CCAGGTCCCCCTCTACGTGCTACC-ATT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA-TCGACTGGGTCCCCCTCTGCGTGCTGCCGA-T
* * * * * **
15272565 CCTGCTACCACAACCCTCGGTCTGGTCAGATGTTAGACTGGCAATGAACTCCGTATGTCTAAGAG
129 CCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * *
15272630 AACCGACGAAACGAGCGGACGGGC---C-----CGC-A---C-GCCAGAGAAACAGGATGCGCAA
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
** *
15272682 GCCACGGATCGATAGGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
* * *
15272747 TTTTTATGGCTTGTAAATTCATACAATGGTCCCGTAAGCCTTTACGTAAAGTTTCATGGCAAGAC
324 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * *
15272812 AACTCATTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
389 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAA-TTTTT
* * * * *
15272877 TGGTAGGAGTTTTGGCCCCAAACTCGGTAGACGTGATCCTTGTATTTTTTTCTAGCATGCACAAA
453 TCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGT-TGGCATGCACAAA
15272942 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
15273007 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGT
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * * * * *
15273072 GTTCTCGAGATTTGATGAGAGATAGGTGGCCACTATCAGGGCCAAGTACTAGCACCCATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
** * * *
15273137 TCATGTGCGCACACCTCCCCAACCCGCCGGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCT-
712 TCATGTGCGCACACC-CCCCGGCCC-CCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTC
* *
15273201 C--CGA---T-----GATGGTGCCCCGACGAAGAAAAATACGGGACCAGCACATGCCTGAGCCCA
775 CGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCA
* * * * *
15273256 GCATGTGCTGCCGCAACCCTCGCTTCGGTCCGATCTTAGACTGGGAATGAACACCCTATG
840 GCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
15273316 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAAAAAACAAACGTGCGGGCGGTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
15273381 CGGCCAGAGGGGCAGGATGCGCATGCCGAGGATCGGCTGGGTCCCCCTCTGCGTGCTGTCGATCA
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
* ** *
15273446 TGCTACCCCAACCCTCGGTCTAATCCGATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
15273511 CCGACGAAATGAACGGGCGAGTGGACGGACGGGCACTACGTCGACCAGAGAGACGGGATCCGCAA
196 CCGACGAAACGAGCGGGCGGGCGGGCGG--GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
15273576 G-CGATGGATCGATAGGGTGGTCGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATACC
259 GCCG-TGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
15273640 ATTTTTATGGCTTGTAAATTCGTACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
323 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** **
15273705 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTT
388 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTT
* * *
15273770 TCGTAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATG-AAAAA
453 TCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
*
15273834 AAAATTCAGCTAAAAACTCGAGGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTT
517 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
15273898 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCGCAAATGCTCTTTAAGGGGGTGTAA
582 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
15273963 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCTATCGCACA
647 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * *
15274028 TCATGTGCGCACACCCCCTCCCCCGTCCCCCCAATCACCGGAACCCTAATGCCGTCGGTCAGGTT
712 TCATGTGCGCACA----C-CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTT
* * * * **
15274093 CTCCGACGATGCTCCGACGATGGTGCCCCGACGAAAAAAAATGTGGCACCAGAACATGCCCAAGC
772 CTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGC
*
15274158 CTAGCATGTGCTGCCGCAA-CC-C--T-CGG--T--TC-----C---G-AT---CT-CG-AT-
837 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15274197 CTTAGA-TGGGAATGAGCTCTGCATGCCTAAGTCAACCCACG-AATGAGCGGTGC-GGTGCTCAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGC-GTGCGGGCGCTCAG
* * * * *
15274259 CCGGCTAGAGGGGCGGGATGCGCAAGCC-GGGATCGACCGGGACCCCCTCTACGTGCTGTCGATC
65 CCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATC
* ** * * *
15274323 CTACTACCGCAACCCTCGGTCCAGTCTGATCTTAGACTAGGAATGAAACTTCGTATGCCTAAGCC
130 CTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATG-AACTCCGTATGCCTAAGCC
* * * *
15274388 AACCGACGAAACGA---TGCGGGCAGGCGGAGGCACTACGCCGACCAGAGAGACGGGATGCGCAA
194 AACCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
15274450 G-CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTTG--TGCCAATGCC
259 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTC-TGCATGCCAATGCC
15274512 ATTTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
323 A-TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
15274577 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTCTTTGCGGTTTC-GGATTTTTTTAAAATT
387 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGG-TTCGGGA-TTTTTTAAAATT
15274641 TTTTCGAAGGA-TTTTGG-CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
450 TTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
15274704 AAAAAATTCAGCT-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
515 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
15274768 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
580 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
*
15274833 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTA-CAGCACCCATTGCA
645 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
*
15274897 CATCATGTGCGCACACCCCCCAGGCCCCCCGATCGCCGGAACCCCAATGCCGTCC-ATCAGGTTC
710 CATCATGTGCGCACACCCCCC-GGCCCCCCGATCGCCGGAACCCCAATGCCG-CCGGTCAGGTTC
* * *
15274961 TCCGGCGATGCTCCGGCGATAGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGTC
773 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCC
* * *
15275026 CAGCATGTGCTGCCGCAACCCTCAGTCCGGTCGGATCTTAGACTAGGAATGAACTCCGTATG
838 CAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
15275088 CTTAGACTGGTAATGAACTCCGTATGCCTAAGTCAACCCACGAAACAAGCGTACGGGCGCTCACC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
15275153 CGGCCAGAGGGGTGGGATGCGCATGCCGGGGATCGGCCGGGTCCCCCTCTGCGTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * ** * * *
15275218 TGCTGCTGCAACCCTCGATCTGATTTGATCTTAGACTAGGAATGAACTCCGTACGCCAAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
15275283 CCGACGAAACGAGCAGGCGGGCGAGCGGGCGGGCGGGCCCTACG-CGGCTAGAGAGACGGGATGC
196 CCGACGAAAC--G-A-GCGGGCGGGCGGGC-GG-GGGCACTACGCCGGCCAGAGAGACGGGATGC
* * * *
15275347 GCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCTTATTTTTTCATGCCAAT
255 GCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAAT
15275412 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
320 GCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCA
* *
15275477 AGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAACTT
385 AGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATT
* * * *
15275542 TTTTCGAAAGGATTTTTGGCCCCAAACTTAGTATACATGATCCTTGTATTTTTGTTGGCATGCAC
450 TTTTCG-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
15275607 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
514 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
15275672 TTTTAGACACTTTAATGGCCACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTG
579 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* * * *
15275737 TGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCGATTGC
644 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGC
* * * * ** *
15275802 ACTTCATGGGCGCACACCCCCCGGCCCCCCGGTCGCCGAAACCCCAATGTAGCCGGTCAAGTTCT
709 ACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
* * * * *
15275867 CCGGTGATGCTCTGACGATGGTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCTGAACCT
774 CCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCC
* * * * * * * *
15275932 AGGATGTGCTACTGCAACCCTCAGTCCAGTCCGATCTTAGACTGGGATTGAACTCTGTATG
839 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * **
15275993 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCGACCCACGAAACGAGCGTGCGAGCGCTCAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * * * *
15276058 CGGGTAGAAGGGCGGGATGTGCAAGCCGGGGATCGACTGCGTCCCCCTCTGCATGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
*** * *
15276123 TGCTGTTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGCATACCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
15276188 CCGACGAAATGAGCGGGCGGGCGGGCGGGGGCATTACG-CGACCAGGGAAACAGGATGTGCAAGC
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
15276252 CATGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATGCCATT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
*
15276317 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCAAGGCAAGACGA
326 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
15276382 CTCATTTTCTGTTTTTCACGATTTTTTGAAACTTTTTTGCGGTT-TGGA-TTTTTAAAATTTTTT
391 CTCGTTTTCTATTTTTCACGA-TTTTTGAAAC-TTTTTACGGTTCGGGATTTTTTAAAATTTTTT
15276445 CGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAC
454 CGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-
15276510 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
15276575 AGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * * *
15276640 CTTCTCGAGCTTTGATGATGGATAGGGCGCCAATATAAGGGCCAA-TACCAGCAACCCATTGCAC
648 -TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC-ACCCATCGCAC
*
15276704 ATCATGTGCGCACACCCCCCAGGCCCCCCGATCGCCGGAAACCCCAATGCCGTCC-ATCAGGTTC
711 ATCATGTGCGCACACCCCCC-GGCCCCCCGATCGCCGG-AACCCCAATGCCG-CCGGTCAGGTTC
*
15276768 TCCGGCGATGCTCCGACGATAGTGCCCCGACGAAGAAAAATTGCTGGCACCAGCACAT-CCTGAG
773 TCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA-TGC-GGCACCAGCACATGCCTGAG
* * *
15276832 TCCAGCATGTG-TGCCGCAACCCTCGGTCCGGT-TGATCCTAGACT-AGAATGAACTCCGTATG
836 CCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15276893 CCTTAGACT-GCAATGACCTCCGTATACCTAAATCAA-CCACGAAAC-AGCGTACGGGCGCCTCA
1 -CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCG-CTCA
* * * * * * * *
15276955 CCCGGCCAGA--GGCGGCATGCGC-ATCCGGGAATTG-GTCGGTTCCCCCTCTGCG-GCTGCTGA
64 GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCGTGCTGCCGA
* * * * * * * * *
15277015 TCCTACTGCTGCAACCCTC-GTCCGAT-CTATCTTAGAC-AGGAATGAACTCCGTACGCC-AAAC
128 TCCTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGC
* * *
15277076 CAAACCGACGAAACGAGCAGGCGGCGCAACGGGCAGGCGGGTTACTACGCCGGCTAGAGAGACGG
193 C-AACCGACGAAACGAGCGGGCGG-G---CGGGC-GG-GGG-CACTACGCCGGCCAGAGAGACGG
* * * *
15277141 G-TGCGCAAGTCGTGGATCGATAGGGTGGTAGGT-GGTTTAGGCACATCTTCTTATTTTTTCATG
250 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATG
*
15277204 CCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
315 CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCA
* *
15277269 TGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTA
380 TGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTA
* * * * * * *
15277334 AACTTTTTTGGAAGGATTTTTGGCCCCAAACTTAGTATACATGATCCTTGTATTTTTATTGGCAT
445 AAATTTTTTCGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT
*
15277399 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACACGATTTTGTGACCATTTGAAAAAAGTGTC
510 GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
* * * *
15277464 CCCATTTTAGACACTTTAATGGCCACTGGTAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGG
575 CCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGG
* * * *
15277529 GGCGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAA-GGCCAAGTACCAGCATCGA
640 GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCA
* * * * **
15277593 TTGCACTTCATGGGTGCACACCCCCC-G------G-TCGCCGGAACCCCAATGTAGCCGGTCAGG
705 TCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGG
* * * *
15277650 TTCTCCGGTGATGCTCTGACGATGGTGCCCTGATGAAGAAAAATGCGGCACCAGCACATGCCCTG
770 TTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG-CCTG
* * * * * * *
15277715 AACCTAGGATGTGCTGCCTGCAACCCTCGGTCCAGTCCGATCTTAGACTGGTGGATTGGAACTCT
834 AGCCCAGCATGTGCTGCC-GCAACCCTCGGTCCGGTCTGATCTTAGACT-G-GGAAT-GAACTCC
15277780 GTATG
895 GTATG
* * * **
15277785 CTTAGACTGGGAATGAACTCCGTATGCCTAA-TCGACCCACGAAACGAGCGTGCGAGTGCTCAAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
** * * ** * *
15277849 CGGGTAGAAGGGCGGGATGCGCAAGCCGGGGATTGACTGCATCCCCCTCTGCATGCTGCCGATCT
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
*** * * * *
15277914 TGCTGTTGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCTGCATACCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * *
15277979 CCGACGAAATGAGCGGGCGGGCGGGC--GGGCATTACGCCGACCAGGGAAACAGGATGCGCAAGC
196 CCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
* *
15278042 CATGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTGCATGCCAATGCCATT
261 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
15278107 TTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGA
326 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* ** * *
15278172 CTCGTTTTTTATTTTTCACGATTTGCGAGAAC-TTTTACGGTTCTGGATTTTTTTTAAATTTTTT
391 CTCGTTTTCTATTTTTCACGATTTTTGA-AACTTTTTACGGTTCGGGA-TTTTTTAAAATTTTTT
* * *
15278236 CAAAGGGAGTTTTGGCCACAAACTTGGTAGACGTGATCCTTGTATCTTTGTTGGCATGCACAAAA
454 CGAA-GGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
15278301 AAATTCAACTAAAAACTAGAAGTGTAAAAGATTTTGTGACCATTTGAAAAAAGTGTCCGCATTTC
518 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
15278366 ATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
583 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* *
15278431 TTCTCAAGGTTTGATGAGGGATA-GGGGCCAATATAAGGGCCAAGTATCAGCACCCATCGCACAT
648 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * ** *
15278495 CATGTGTGCACACCCCCCGACCCCCCCGATCGCTGGAACCCTAAAGCAACAGGTCAGGTTCTCCG
713 CATGTGCGCACACCCCCCG-GCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
* ** * * ** * *
15278560 GTGATGCTCCGACGATAATGTCTCGGTGAAGAAAAATGCGACACCAGCACATGCCTGAGCCTAGC
777 GCGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGC
* * *
15278625 AAGTGCTACCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
842 ATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* *
15278683 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAATGAGCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** ** * *
15278748 CGGCAAGAGGGTCGGGATGCGTAAGCCAAGGATCGGTTAGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * **
15278813 TGCTACCGCAACCCTTGGTCCGGTCCAATCTTAGACTGGGAATGAACTTTGTATGCCTAAGCCAA
131 TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
15278878 CCGACGAAACGAGCGGGCGGGGGCGGG-GCCGGGCACTATTG-CGGCCAG-GAGGAAGGGATGCG
196 CCGACGAAACGAGCGGGC--GGGCGGGCG-GGGGCACTA-CGCCGGCCAGAGA-GACGGGATGCG
*
15278940 CAAGCCGTGGGATCGATA-GGTGGTAGGTGGG-TTAGTCCGACAATC-TCATATTTCTGCATGCC
256 CAAGCCGT-GGATCGATAGGGTGGTAGGTGGGTTTAG-GC-AC-ATCTTCATATTTCTGCATGCC
*
15279002 AATGGCCAATTTTTATGGCTTGTAAATTCATACAATGGTCCC-TAGCGCCTTCACGTGGAAGTTT
317 AAT-GCC-ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA-AGCCTTCACGT-GAAGTTT
* *
15279066 CATGGCTAAGACGACTCGTTTTCTATTTTTCATGATTTTTGGAAACCTTCTTTGCGGTTCGGGAT
378 CATGGC-AAGACGACTCGTTTTCTATTTTTCACGATTTTT-GAAA-CTT-TTTACGGTTCGGGAT
** *
15279131 TTTTTAAAATTTTTTTCAGGAAGGAGTTTTTAACCTCAAACTTGGTAGACGTGATCCTTGTATTT
439 TTTTTAAAA-TTTTTTC--GAAGGAG-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTT
*** *
15279196 TT-TTGTTGTGCACCAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTTG
500 TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA-TTTG
*
15279260 AAAAAAGTGTCCCCACTTTCAGACACTTTAATGGCTATTGGCAAGCAAACCCTGTAAAATCTCAA
564 AAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGC-AGCAAA-CCTGTAAAATCTCAA
* *
15279325 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGCATAGGGGGCCAAAATAAGGGCC
626 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG-AGGGATAGGGGGCCAATATAAGGGCC
* * * *
15279390 AAGTACCAGCACCCATCACACATCATGTACGCACACCCCCCGGCCCCTCCGATCGCAGAAACCCC
690 AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGCCGGAACCCC
* * * *
15279455 AATGCCGCCGGTCAGGTTCTCTGACGATGCTCCTG-CGATGGTGCCCCGATGAAGAAAAATACGG
754 AATGCCGCCGGTCAGGTTCTCCGGCGATGCTCC-GACGATGGTGCCCCGACGAAGAAAAATGCGG
* * * *
15279519 CACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCTGTCTGATCTCAGATTG
818 CACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTG
**
15279584 GGAATGAACTCTATATG
883 GGAATGAACTCCGTATG
* * *
15279601 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* *
15279666 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG-GTCGGGTCCCCCTCTGCGTGCTACCGATC
66 CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACT-GGGTCCCCCTCTGCGTGCTGCCGATC
* * * * * **
15279730 TTGCTGCCACAACCCTTGGTCTGGTCCAATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCA
130 CTGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
15279795 ACTGACGAAACAAGGGGGCAGGCGGGC--GGGCACTACACCTGCCAGAGAGACAGGATGCGCAAG
195 ACCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
15279858 CCGTGGTTCGATAAGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATACCAATGCCAT
260 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCAT
15279923 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
325 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * *
15279988 ACTCGTTTTCTATTTTTCACGATTTTGGAAACTTTTTGCGGTTCAGGATTTTTTAACATTTTTTT
390 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAA-AATTTTTT
* * * *
15280053 TGAAGGAGTTGTGGCCCCAAAGTAT--TAGATGTGATCCTTGTATATTTT-TTGGCATGCACAAA
454 CGAAGGAGTTTTGGCCCCAAACT-TGGTAGACGTGATCCTTGTAT-TTTTGTTGGCATGCACAAA
15280115 AAAATTCAGCTAAAAACT-GAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
517 AAAATTCAGCTAAAAACTCG-AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
*
15280179 TCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
581 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
15280244 AGTTCTTGAGGTTTGATGA-GGATAGGCGG-TAATATAAGGGCCAAGTACCAGCACCCATCGCAC
646 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * **
15280307 ATCATGTGTGCACACCCCCCCGGCCCCCCCGATCGCCGGAACCCCAAAGCAACCGGTCA-GTTCT
711 ATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT
** * *
15280371 CCGATGATGCTCCGACGATGGTGCCTCGACTGAAGAAAAATGCAGCACCAGCACATGCC-GAGCC
774 CCGGCGATGCTCCGACGATGGTGCCCCGAC-GAAGAAAAATGCGGCACCAGCACATGCCTGAGCC
* * *
15280435 CAGCAATGTTGCTG-C-CAACACTCTGTCC-GTCTAATCTTAGACTGGGGAATGAACTCCGTATG
838 CAGC-ATG-TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACT-GGGAATGAACTCCGTATG
* * * * *
15280497 CTTACACTGGGAATGGAACTCCGTAAGGCCCTAAGCCAACCGACGAAAC-AGCGAGCGG
1 CTTAGACTGGGAAT-GAACTCCGT-ATG-CCTAAGTCAACCCACGAAACGAGCGTGCGG
15280555 CAGAGCGAGC
Statistics
Matches: 6319, Mismatches: 711, Indels: 399
0.85 0.10 0.05
Matches are distributed among these distances:
866 5 0.00
867 108 0.02
868 3 0.00
869 1 0.00
871 113 0.02
872 151 0.02
873 154 0.02
874 58 0.01
876 10 0.00
878 71 0.01
879 243 0.04
880 35 0.01
881 7 0.00
882 3 0.00
883 14 0.00
884 7 0.00
885 69 0.01
886 11 0.00
887 19 0.00
888 13 0.00
889 4 0.00
890 20 0.00
891 197 0.03
892 316 0.05
893 133 0.02
894 580 0.09
895 106 0.02
896 224 0.04
897 238 0.04
898 334 0.05
899 631 0.10
900 153 0.02
901 162 0.03
902 299 0.05
903 219 0.03
904 113 0.02
905 547 0.09
906 100 0.02
907 17 0.00
908 35 0.01
909 34 0.01
910 23 0.00
911 63 0.01
912 62 0.01
913 84 0.01
914 69 0.01
915 12 0.00
916 58 0.01
917 11 0.00
918 379 0.06
919 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (899 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTACCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGCGGGCGGGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGC
CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
CTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCG
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGA
TGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGT
GCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:15278686 original size:26 final size:26
Alignment explanation
Indices: 15278657--15278709 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15278647 CCGGTCTGAT
*
15278657 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15278683 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15278709 C
1 C
15278710 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15280505 original size:27 final size:27
Alignment explanation
Indices: 15280470--15280521 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
15280460 TCCGTCTAAT
*
15280470 CTTAGACTGGGGAAT-GAACTCCGTATG
1 CTTACACT-GGGAATGGAACTCCGTATG
15280497 CTTACACTGGGAATGGAACTCCGTA
1 CTTACACTGGGAATGGAACTCCGTA
15280522 AGGCCCTAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
26 6 0.26
27 17 0.74
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (27 bp):
CTTACACTGGGAATGGAACTCCGTATG
Found at i:15281239 original size:26 final size:26
Alignment explanation
Indices: 15281210--15281262 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15281200 CTGATCCGAT
*
15281210 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15281236 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15281262 C
1 C
15281263 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15281256 original size:738 final size:740
Alignment explanation
Indices: 15279760--15281291 Score: 2099
Period size: 738 Copynumber: 2.1 Consensus size: 740
15279750 CTGGTCCAAT
* *
15279760 CTTAGACTGGGAATGAACT-C-TATATGCCTAAGCCAACTGACGAAACAAG-GG-GGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTA-ATGCCTAAGCCAACCGACGAAACAAGCGGCGGCAGGCGAG
* * * * *
15279821 CGGGCACTACACCTGCCAGAGAGACAGGATGCGCAAGCCGTGGTTCGATAAGGTGGTAGGTGGGT
65 CGGGCACTACACCGGCCAGAGACACAGGATGCGCAAGCCGTGGATCGATAAGGTAGCAGGTGGGT
* *
15279886 TTAGGCACATCTTCATATTTTTGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATAG
**
15279951 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTGG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAC
* * * * ** * *
15280016 AAACTTTTTGCGGTTCAGGATTTTTTAACATTTTTTTTGAAGGAGTTGTGGCCCCAAAGTATTAG
260 AAACTCTTTACGGTTCAGGATTTGTTAAAATTTTTTCGGAAGGAGTTGTGGCCACAAACTATTAG
* *
15280081 ATGTGATCCTTGTATATTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTGAAAGTGTACAAG
325 ACGCGATCCTTGTATATTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTGAAAGTGTACAAG
**
15280146 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACC
* ** **
15280211 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGATAGGCGGTAA
455 TGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGATAGGCGCCAA
15280276 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCCGATC
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCCGATC
* * *
15280341 GCCGGAACCCCAAAGCAACCGGTCAGTTCTCCGATGATGCTCCGACGATGGTGCCTCGACTGAAG
585 GCCAGAACCCCAAAGCAACCGGTCAGTTCTCCGATGATGCCCCGACGATGGCGCCTCGACTGAAG
* * *
15280406 AAAAATGCAGCACCAGCACATGCCGAGCCCAGCAATGTTGCTGCCAACACTCTGTCCGTCTAATC
650 AAAAATGCAGCACCAGCACATGCCGAGCCCAACAATGTTACTGCCAACACTCTGTCCGTCCAATC
15280471 TTAGACTGGGGAATGAACTCCGTATG
715 TTAGACTGGGGAATGAACTCCGTATG
* *
15280497 CTTACACTGGGAATGGAACTCCGTAAGGCCCTAAGCCAACCGACGAAAC-AGCGAGCGGCAGAGC
1 CTTAGACTGGGAAT-GAACTCCGTAATG-CCTAAGCCAACCGACGAAACAAGCG-GCGGCAG-GC
* * * * *
15280561 GAGCGTGCACTAC-GCGGCTAGAGACACGGGATGCGCAAGCCGT-GATCGATAGGGTAGCAGGTG
62 GAGCGGGCACTACACCGGCCAGAGACACAGGATGCGCAAGCCGTGGATCGATAAGGTAGCAGGTG
* *
15280624 GGTTTAGGCAACATCTTCATA-TTCTGCATGCCAATGCCA-TTTTATGGCTTTGTTAAATTGATA
127 GGTTTAGGC-ACATCTTCATATTTCTGCATACCAATGCCATTTTTATGGC-TTG-TAAATTCATA
15280687 CAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
189 CAATAGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
15280752 -TTTACAAAC-CTTTACGGTTCTGGATTTGTTAAAATTTTTTCGGAGGGA-TTTTGGCCACAAAC
254 TTTTACAAACTCTTTACGGTTCAGGATTTGTTAAAATTTTTTCGGAAGGAGTTGTGGCCACAAAC
*
15280814 T-TGGTAGACGCGATCCTTGTAT-TTTTGTT-GCA-GCACAAAACAATTCAGCTAAAAACTCG-A
319 TAT--TAGACGCGATCCTTGTATATTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACT-GAA
* * * *
15280874 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTCGCATTTCATACACTTTAATGGGTACTG
380 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
*
15280939 ACAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAAGG
445 ACAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATG-AGG
* *
15281004 ATAGG-GCCCAATATAAGGGCCAAGTATCAGCACCCATCGTACATCATGTGTGCACACCCCCCCG
509 ATAGGCG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCG
* * *
15281068 GCCCCCCCGATCGCTAGAACCCCAAAGCAACCGGTCAAGTTCTCCGTTGATGCCCCGGCGATGGC
573 GCCCCCCCGATCGCCAGAACCCCAAAGCAACCGGTC-AGTTCTCCGATGATGCCCCGACGATGGC
*
15281133 GCC-CGA-TGAAGAAAAATG-TGACACCAGCACATGCCCGAGCCCAACAA-G-TACTGCCGTAAC
637 GCCTCGACTGAAGAAAAATGCAG-CACCAGCACATG-CCGAGCCCAACAATGTTACTGCC--AAC
* * * *
15281193 CCTC-GATCTGATCCGATCTTAGA-TTGGGAATGAACTCCGTATG
698 ACTCTG-TCCG-TCCAATCTTAGACTGGGGAATGAACTCCGTATG
* * *
15281236 CTTAGACTGGGAATGAACTCCGT-ATGCCTAAGTCAACCCACGAAACGAGCGTGCGG
1 CTTAGACTGGGAATGAACTCCGTAATGCCTAAGCCAACCGACGAAACAAGCG-GCGG
15281292 GTGCTCAGCC
Statistics
Matches: 703, Mismatches: 67, Indels: 50
0.86 0.08 0.06
Matches are distributed among these distances:
736 18 0.03
737 30 0.04
738 183 0.26
739 176 0.25
740 117 0.17
741 52 0.07
742 114 0.16
743 13 0.02
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.26
Consensus pattern (740 bp):
CTTAGACTGGGAATGAACTCCGTAATGCCTAAGCCAACCGACGAAACAAGCGGCGGCAGGCGAGC
GGGCACTACACCGGCCAGAGACACAGGATGCGCAAGCCGTGGATCGATAAGGTAGCAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAATTCATACAATAGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTACA
AACTCTTTACGGTTCAGGATTTGTTAAAATTTTTTCGGAAGGAGTTGTGGCCACAAACTATTAGA
CGCGATCCTTGTATATTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTGAAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTCAAGGTTTGATGAGGATAGGCGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCCGGCCCCCCCGATCG
CCAGAACCCCAAAGCAACCGGTCAGTTCTCCGATGATGCCCCGACGATGGCGCCTCGACTGAAGA
AAAATGCAGCACCAGCACATGCCGAGCCCAACAATGTTACTGCCAACACTCTGTCCGTCCAATCT
TAGACTGGGGAATGAACTCCGTATG
Found at i:15282137 original size:26 final size:26
Alignment explanation
Indices: 15282108--15282160 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15282098 CTGATCCGAT
* *
15282108 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCCTATG
*
15282134 CTTAGGCCGGGAATGAACTCCCTATG
1 CTTAGACCGGGAATGAACTCCCTATG
15282160 C
1 C
15282161 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCCTATG
Found at i:15283208 original size:185 final size:185
Alignment explanation
Indices: 15282896--15283247 Score: 467
Period size: 185 Copynumber: 1.9 Consensus size: 185
15282886 CCCAATTTGA
* * * * **
15282896 CTGTATGCCTAAGTCAACCCACGAAACGAGGGTGCGGGCGCTCAATAGGCCATAGGGGCGGGATG
1 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAATAGACCAGAAGGGCACGATG
* * * *
15282961 CGCAAGCTGAGGATCTATCAGGTCCCCCTCTACGTGCTGCCGATCCTACTGTCGCAACCCTCGGT
66 CACAAGCCGAGGATCGATCAGGTCCCCCTCTACGTGCTGCCGATCCTACTCTCGCAACCCTCGGT
*
15283026 C-AGATCCGATCTTAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
131 CTAG-TCCGATCATAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
* * * *
15283081 CTGTATGCCTAAGTCATCCCACGAAACGAGCGTTCGGGCGCTCAGTCGACCAGAAGGGCACGATG
1 CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAATAGACCAGAAGGGCACGATG
* * *
15283146 CACAAGCCG-GTGATCGATCGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACT-GCAACCCTCG
66 CACAAGCCGAG-GATCGATCAGGTCCCCCTCTACGTGCTGCCGATCCTACT-CTCGCAACCCTCG
* * *
15283209 GTCTAGTCCGATCATAGACTGGGAATGAAGTCCGTATGC
129 GTCTAGTCCGATCATAGACTAGGAATGAACTCCATATGC
15283248 CGAAGCCAAT
Statistics
Matches: 143, Mismatches: 21, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
184 1 0.01
185 139 0.97
186 3 0.02
ACGTcount: A:0.23, C:0.29, G:0.27, T:0.21
Consensus pattern (185 bp):
CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAATAGACCAGAAGGGCACGATG
CACAAGCCGAGGATCGATCAGGTCCCCCTCTACGTGCTGCCGATCCTACTCTCGCAACCCTCGGT
CTAGTCCGATCATAGACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACT
Found at i:15283970 original size:26 final size:26
Alignment explanation
Indices: 15283941--15283993 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15283931 CCGGTTCGAT
15283941 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15283967 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15283993 C
1 C
15283994 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15284831 original size:26 final size:26
Alignment explanation
Indices: 15284795--15284847 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15284785 CTGGTCTGAT
15284795 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15284821 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15284847 C
1 C
15284848 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15285739 original size:26 final size:26
Alignment explanation
Indices: 15285700--15285750 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15285690 CCGGTCCGAT
*
15285700 CTTAGACTGAGAATGAACTTCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
15285726 CTTAGACTGGGAATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
15285751 TCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.24, T:0.29
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15286183 original size:25 final size:26
Alignment explanation
Indices: 15286135--15286189 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
15286125 TTTTTCAAGA
* *
15286135 TTTTTGAAACTTTTTGTGGTTAGGGAT
1 TTTTTGAAACTTTTTGTCGATA-GGAT
15286162 TTTTTGAAA-TTTTT-TCGATAGGAT
1 TTTTTGAAACTTTTTGTCGATAGGAT
15286186 TTTT
1 TTTT
15286190 GGCCCCAACC
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 8 0.31
25 4 0.15
26 5 0.19
27 9 0.35
ACGTcount: A:0.20, C:0.04, G:0.20, T:0.56
Consensus pattern (26 bp):
TTTTTGAAACTTTTTGTCGATAGGAT
Found at i:15286303 original size:901 final size:900
Alignment explanation
Indices: 15284259--15290317 Score: 7335
Period size: 908 Copynumber: 6.7 Consensus size: 900
15284249 TAGGCACATC
* * * *
15284259 TTCATACAATGGTGCTTTAAGCGC-TCACGTGAAGTTTCATGGCACGATGACTCGTTTTCTATTT
1 TTCATACAATGGTCCCTTAAGC-CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * **** * * * * *
15284323 TTCACGATTTTTGAAACTTTTTGTGGTTCCAAATTTTTTTAAATTTTTTTGGATGGGGTTTTGGA
65 TTCATGATTTTTGAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * *
15284388 CCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCCAAAAAC
130 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
15284453 TCGAATTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACATTAATTGCT
195 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* * * *
15284518 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGCTTTGATA
260 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
15284583 AGGGTTAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATCGCACATCATATGCGCAAACCCC
325 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
** * * * * *
15284648 CTCGGCCCCTTCAATCACCGGAAACCCAATGCCGCCGGTTAGGTTCTCCGACGATGCTCCGGCGA
390 C-CGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGA
* * * * * *
15284713 TGGTGCCCCGAGGTAGAAAAATGTGACACCAGCACATGCCCGAGCCCAGCATGTGCTGTCACAAC
454 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* *
15284778 CCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCG
519 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * **
15284843 TATGCCTAAGTCAACCCACAAAAC-AAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCG
584 TATGCCTAAGTCAACCCACGAAACGAA-CGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCG
* * * * *** *
15284907 CAAGCCGAGGATCGACCTGGTCCCCTTCTGCATGCTGTCGATCCTGCTGTCATAAACCC-CGCTC
648 CAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTG-CCGCAACCCTCGGTC
** * * * * * * *
15284971 CAGTCCGATCTTAGACTAGGAATGAACTCTGCATGCCTAAGCCAATCGATGAAACGAGCGGGTGG
712 TGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GA--GGGCGG
* * * * *
15285036 GCGGACGGGCCGGCACTACATCGGCCAGAGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGG
774 GCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
15285101 TAGGTGGGTTTAGG-AAATTCTTCATATTTCTACGTGCCAATGTCATATTTATGGCTTGTAAA
839 TAGGTGGGTTTAGGCACA-TCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
*
15285163 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTT
1 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * **
15285228 TCAAGATTTTTGAAACTTTTTACGGTTTA-GGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGAA
66 TCATGATTTTTGAAACTTTTTGCGG-TTAGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* * * *
15285292 CCCAAACTTAGTAGATGTGATCCTTGTATTTTTGTTGACATGCACAAAAAGATTCAGCTAAAAAC
130 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
*
15285357 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTC-GCCACTTTAATGGC
195 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGC
* *
15285421 TATTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGGTGTGAGTTCTCGAGGTTTGA
259 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGGTGTGAGTTCTCGAGGTTTGA
* * *
15285486 TGATGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATCATGTACGCACACC
323 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* * * * ** *
15285551 CCCCCGACCCCCCCCGATCGTCGG-ACCCCAATACCGTCGGTCAAGTTCTCCGGTGATGCTCCGA
387 CCCCCG-GCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGG
* * * * **
15285615 CAATGGTGCCCCGACGAAGAAAAATGCCGTACCAGCACATGCCCGAGCCGAGCATGTGCTGTTGC
451 CGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * * *
15285680 AACCCTCGATCCGGTCCGATCTTAGACTGAGAATGAACTTCGTATGCTTAGACTGGGAATGAACT
516 AACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACT
* *
15285745 CCGTATTCCTAAGTCAACCCACGAAACGAACGTACGGGCGATCAGCCGACCAGAGGGGCGGGATG
581 CCGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATG
* * *** * *
15285810 CGCAAGCCGAGCATCGGTCGGGTCCTATTCTGCGTGCTGTCAATCTTGCTGCCGCAACCCTCGGT
646 CGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGT
* * * *
15285875 CCGGTCCAATCTTAGACTGGGAATGAACTCTGTACGCCTAAGCCAACCGACGAAA-TGGGCGGGC
711 CTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGGGCGGGC
* * * *
15285939 GGCCGGGCGGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTTGATCGATCGGGTGGTA
776 GGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* * *
15286004 GGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCATGTAAA
841 GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
* *
15286064 TTCATACAATGGTCCCTTAAGCCTTCACGTGGAGTTTAATGGCAAGACGACTCGTTTTCTATTTT
1 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
15286129 TCAAGATTTTTGAAACTTTTTGTGGTTAGGGATTTTTTGAAATTTTTTC-GATAGGATTTTTGGC
66 TCATGATTTTTGAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGGA-AGGAGTTTTGGC
*
15286193 CCCAACCTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
130 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
15286258 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
195 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
15286323 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATG
260 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
*
15286388 AGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
325 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
** * * * * *
15286453 CTAGCCCCCCCGATCGTCGGAACCCCAATGCCGTTGGTCAGGTTCTCCGGCGACGCTCCGGTGAT
390 CCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGAT
** * * * ** *
15286518 GGTGCCCCGATAAAGAAAAATGTGGCACCAGCACATGCCTGACCCCAGCATGTGCTATCGTAACC
455 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACC
* * *
15286583 CTTGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTCTGT
520 CTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
15286648 ACGCCTAAGTCAACCCACGAAACGAGCGTACGGCCGTTCAGCCGGCCAGAGGGGCGGGATGCGCA
585 ATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCA
* * * * * * *
15286713 AGCCGGGGATCGGCTGGGTCCCCCTCTGTGTGCTG-CAGATCTTGTTGCAGCAACCCTCAGTCTA
650 AGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTC-GATCCTGCTGCCGCAACCCTCGGTCT-
**
15286777 GGTTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCGACGAAACGAGCGGACAG
713 GG-TCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAG-GG-C--
* * *
15286842 GCAGGCGGGCGGGCGGGCACTACGCCGCCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGT
772 G--GGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* **
15286906 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATTTCTTGTAA
835 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAA
15286971 A
900 A
* *
15286972 TTCATACAATGGTCCCTTAAGCTTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
1 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* ** * *
15287037 TCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTTAAAATTTTTT-GAGAAGGAGTTTTGG
66 TCATGATTTTTGAAACTTTTTGCGGTTAGGGA-TTTTTTAAAATTTTTTCG-GAAGGAGTTTTGG
* * ** * *
15287101 CCCCAAACTTGGTAGACATGATCCTTGTATTTTTTTTCACTTGCATAAAAAAATTCAGCTAAAAA
129 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
15287166 CTCGAAGTGGACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGC
194 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * *
15287231 TACTGGCAGC-AACCTATAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAT
259 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
* ** *
15287295 GAGGGATACGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTGCATCATGTACGCACACCC
324 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * ** * *
15287360 CCCGGCCCCCCCGATCATCAGAAACCCAATGCCACCAGTCAGGTTCTCCGACGATGCTCCGACGA
389 CCCGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGA
* ** * * * * *
15287425 TGGTTCCCCGGTGAAGAAAAATGCAGCACCAGCACATTCTCGAGCCCAGTATGTGCTGCCCCAAC
454 TGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAAC
* * * *
15287490 CCTTGGTCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGCAATGAATTCCG
519 CCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
* * * * * * *
15287555 TATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGTGCCCAGCC-AGCCAGAGGGGCAGAATGCG
584 TATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCG
* * * * * * * * * *
15287619 CAAGCCAAGAATCAGACGGGTCCCCCTTTACATGCTGCCGATCCTGCTGCCACAACCCTTGGTCT
648 CAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCT
* * ** * *
15287684 GGTTCGATCTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGATGAAACAAGCGGGCGGG
713 GGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AAGAGGGCGGG
* *
15287749 CGGGCGGGCAGGTGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
775 CGGGCGGGC----GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
15287814 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCTAATGCCATTTTTATGGCTTGTAAA
836 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
*
15287879 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTT
1 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
* * * *
15287944 TCATGATTTTTGAAACCTTTTACGGTCT-GGGATTTTTTTTAAA-TTTTTCGGAAGGTGTTTTGG
66 TCATGATTTTTGAAACTTTTTGCGGT-TAGGGA-TTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* *
15288007 CCCCAAATTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCGCAAAAAAATTCAGCTAAAAA
129 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
* *
15288072 CCCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGC
194 CTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC
* * * * *
15288137 TACTGGCAGGAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTATCAAGGTTTGAC
259 TACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGAT
15288202 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC
324 GAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC
* * * * *
15288266 CCCTGACCCCTCGATCACCGAGAACCCCAATGGCCGTCGGGTCCAGGTTCTCCGGCGATGCTCCG
389 CCCGGCCCCCCCGATCATCG-GAACCCCAAT-GCCGTC-GGT-CAGGTTCTCCGACGATGCTCCG
* * * ** *
15288331 GTGATGGTGCCCCGACGGAGAAAAATGCAGGCACCACTGCAGATCCGCCCGAGGTCGGCATGCTG
450 GCGATGGTGCCCCGACGAAGAAAAATGC-GGCACCA--GCACAT--GCCCGAGCCCAGCATG-TG
* * * * * *
15288396 CTGCTGTAACCCTCGTTTTCGGTCTGATCTTAGACGGGGAATGAACTCCGTATGCTTAGGCTGGG
509 CTGCCGCAACCCTCG-GTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGG
* * * * *
15288461 AATGAACTCCGTATTCCCTAAGTCAACCCATGAAAC-AACGTCCGGGCGCTCAGCCGGCCAGATG
573 AATGAACTCCGTA-TGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGCCGACCAGAGG
* * * ** * *
15288525 GGC-GGATGCGCAAGTCGGGGATCAG-TTGGTCCCCCTCTACGTGCTGTCGATCCTG-TTCCGCA
637 GGCGGGATGCGCAAGCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCA
* * * ** *
15288587 ACCCTTGGTCTGGTTCAATCTGAGACTGGGAATGAACTCCGTATGCCTAAGCCAAATGACGAAAT
702 ACCCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAG
* * * * *
15288652 A---------AGCAGACGGGCACTACG-CCGCCAAAGAGACGGGATGCGCAAGCCGTGGGATCGA
767 AGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGT-GGATCGA
* * *
15288707 TAGGGTGGTAGATGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTT
831 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
15288772 GTAAA
896 GTAAA
*
15288777 TTCATACCAAT-GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTT
1 TTCATA-CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * *
15288841 TTCATGATTTTTGAAACTTTTTGCGGTTCA-GGATTTTTT-TAATTTTTTCAGAATGAGTTTT-G
65 TTCATGATTTTTGAAACTTTTTGCGGTT-AGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGG
* * * * * * * *
15288903 ACCCAAACCTAGTAGATGGGATCCTTGTATTTTTTTTTGCATGCATAAAAAAATTCAGCTAAAAA
129 CCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAA
*
15288968 CTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAAGTGTCCCCATTTCAGACAC-TTAATGG
194 CTCGAAGTGTACAAGATTTTGTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGG
* * * * * * * *
15289032 CTACTGGCAACAAACCTGTAAAATCTTAAGTGTTTTTTAAGAGGGTGTGAGTTCTCGAGATTTAA
258 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
*
15289097 TGA-GGATA-GGGGCCAATATAA-GGCCAAGTACCAGCA-CCATCGCACATCATGTGCGCACAAC
323 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC
* * *
15289158 CCCCGGCCCCTCCGATCA-CTGGAACCACAATGCCGTCGCGGTCAGGTTCTCCGATGATTGCTCC
388 CCCCGGCCCCCCCGATCATC-GGAACCCCAATGCCGT--CGGTCAGGTTCTCCGACGA-TGCTCC
* * * *
15289222 GGCGATGGTGCCCCGGC-AAGAAAAATGCGGGCACTAGCAGCATGCCGGTGCCCAGCATGTGCTG
449 GGCGATGGTGCCCCGACGAAGAAAAATGC-GGCACCAGCA-CATGCCCGAGCCCAGCATGTGCTG
* * * * **
15289286 CCGCAACCCTCTGGACCGGTCCGATGTTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAAT
512 CCGCAACCCTC-GGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * * * *
15289351 GAACTCTGTATGCGTAAGTCAACCCACG-AACGAGCGTGCGGGCACTCAGTCGACCAGAGGGACG
576 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGCCGACCAGAGGGGCG
** * * * ** * *
15289415 GGATGCTTAAGACGGGGATCGCGCCAGGTCCCCCTCTGCGTGCTCCCGATCCTGCTACTG-AACC
641 GGATGCGCAAGCCGAGGATCG-GCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACC
* *
15289479 CTCCGGGTCTGGTCAAATCGTATAGACTAGGAATGGAACTCCGTATGCCTAAGCCAGACCGACGA
705 CT-C-GGTCTGGTCCAATC-T-TAGACTGGGAAT-GAACTCCGTATGCCTAAGCCA-ACCGACGA
* ** * *
15289544 AACAACGCGGGCGGGCGGGCGGGAAACTACGTCGGCCAAGAGAGAC-GAATGCGCAAGCCGTGGA
764 AAGAGGGCGGGCGGGCGGGCGGG-CACTACGTCGGCC-AGAGAGACGGGATGCGCAAGCCGTGGA
*
15289608 TCGATAGGGTGGTTAGGTGGGTTTTAGG-A-ATTCTTCATATTTCTGTGTGCCAATGCCATTTTT
827 TCGATAGGGTGG-TAGGTGGG-TTTAGGCACA-TCTTCATATTTCTGCGTGCCAATGCCATTTTT
15289671 ATGGCTTGTAAA
889 ATGGCTTGTAAA
15289683 TTCATTAC-ATGGTCTCCCTTAAGCCTTCCACGTGAAGTTTCATGGCAAGGACGACTCGTTTTCT
1 TTCA-TACAATGG--TCCCTTAAGCCTT-CACGTGAAGTTTCATGGCAA-GACGACTCGTTTTCT
*
15289747 A-TTTTCATGATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
61 ATTTTTCATGATTTTTGAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
** * * *
15289811 TGAACCCAAACTTGGTAGATGTGATCCTTGTATTTTTGTTGACATGCACAAACAAATTCAGCTAA
126 TGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAA
* * *
15289876 AAACTTGAAGT-TACAAGATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTTC-GCCACTTTAA
191 AAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAA
* * *
15289939 TGGCTATTGGCAACAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCATCGAGGT
255 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC-TCGAGGT
15290004 TTGATGTAAGATGGATAGGGGGCCCAATTATTAAGGGCCAAGTTACCAGCACCACATCGCACATC
319 TTGATG--AG--GGATAGGGGG-CCAA-TA-TAAGGGCCAAG-TACCAGCACC-CATCGCACATC
* * * * *
15290069 ATGTGCGCAACCCCCCCCGGCCCCTCCGATCGTC-GAAACCCAATGTTCGTCAGGTCAGGTTCTC
375 ATGTGCGC-ACACCCCCCGGCCCCCCCGATCATCGGAACCCCAATG-CCGTC-GGTCAGGTTCTC
* * * * *
15290133 CGACGATGCTCTGGCAATGGTG-CCCGACGGAGAAAAATGCGGCACCAGCACATGGCTCGAG-GC
437 CGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACAT-GCCCGAGCCC
* * * * * *
15290196 TGGATGTGCTACCGC-A-CCT--GTTCGGTCTGATCTTAGACGGGGAACGAACTCCGTATGCTTA
501 AGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * *
15290257 GGC-GGGAATTGAACTCCGTATCCCTAAGTTCAACCCATGAAAC-AAGCGTACCGGG-GCTCAG
566 GACTGGGAA-TGAACTCCGTATGCCTAAG-TCAACCCACGAAACGAA-CGTA-CGGGCGCTCAG
15290318 TCGGTCAGAT
Statistics
Matches: 4449, Mismatches: 578, Indels: 242
0.84 0.11 0.05
Matches are distributed among these distances:
885 3 0.00
886 39 0.01
887 82 0.02
888 13 0.00
889 34 0.01
890 5 0.00
891 46 0.01
892 58 0.01
893 42 0.01
894 34 0.01
895 14 0.00
896 149 0.03
897 72 0.02
898 185 0.04
899 264 0.06
900 94 0.02
901 429 0.10
902 17 0.00
903 2 0.00
904 272 0.06
905 404 0.09
906 319 0.07
907 318 0.07
908 566 0.13
909 269 0.06
910 159 0.04
911 82 0.02
912 1 0.00
913 6 0.00
914 59 0.01
915 38 0.01
916 88 0.02
917 93 0.02
918 36 0.01
919 9 0.00
920 4 0.00
921 23 0.01
922 26 0.01
923 26 0.01
924 45 0.01
925 23 0.01
926 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTT
TCATGATTTTTGAAACTTTTTGCGGTTAGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCC
CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACT
CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
CGGCCCCCCCGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGCGATG
GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
TGCCTAAGTCAACCCACGAAACGAACGTACGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAA
GCCGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCGGTCTGGT
CCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGGGCGGGCGGGCG
GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
GTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAA
Found at i:15287547 original size:26 final size:26
Alignment explanation
Indices: 15287507--15287559 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15287497 CCAGTCTGAT
*
15287507 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
*
15287533 CTTAGACTGGCAATGAATTCCGTATG
1 CTTAGACTGGCAATGAACTCCGTATG
15287559 C
1 C
15287560 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCGTATG
Found at i:15289341 original size:26 final size:26
Alignment explanation
Indices: 15289305--15289363 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
15289295 TCTGGACCGG
*
15289305 TCCG-ATG-TTAGACTAGGAATGAAC
1 TCCGTATGCTTAGACTACGAATGAAC
15289329 TCCGTATGCTTAGACTACGAATGAAC
1 TCCGTATGCTTAGACTACGAATGAAC
*
15289355 TCTGTATGC
1 TCCGTATGC
15289364 GTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTACGAATGAAC
Found at i:15292041 original size:26 final size:26
Alignment explanation
Indices: 15292005--15292054 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15291995 CCGGTCTGAT
* *
15292005 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTGGGAATGAACTCCGTATG
15292031 CTTACACTGGGAATGAACTCCGTA
1 CTTACACTGGGAATGAACTCCGTA
15292055 AGCCCTAAGC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCCGTATG
Found at i:15292776 original size:26 final size:26
Alignment explanation
Indices: 15292747--15292799 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15292737 CTAATCCGAT
*
15292747 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
* *
15292773 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15292799 C
1 C
15292800 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15293674 original size:26 final size:26
Alignment explanation
Indices: 15293645--15293697 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15293635 CTGATCCGAT
* *
15293645 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACCGGGAATGAACTCCCTATG
*
15293671 CTTAGGCCGGGAATGAACTCCCTATG
1 CTTAGACCGGGAATGAACTCCCTATG
15293697 C
1 C
15293698 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACCGGGAATGAACTCCCTATG
Found at i:15294612 original size:26 final size:26
Alignment explanation
Indices: 15294576--15294628 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15294566 CAGATCTGAT
15294576 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
*
15294602 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15294628 C
1 C
15294629 CTAAGTTATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15295511 original size:26 final size:26
Alignment explanation
Indices: 15295482--15295534 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15295472 CCGGTTCGAT
15295482 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15295508 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15295534 C
1 C
15295535 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15296411 original size:26 final size:26
Alignment explanation
Indices: 15296375--15296427 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15296365 CTAGTCTGAT
15296375 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15296401 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15296427 C
1 C
15296428 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15297756 original size:25 final size:26
Alignment explanation
Indices: 15297708--15297762 Score: 69
Period size: 27 Copynumber: 2.2 Consensus size: 26
15297698 TTTTTCAAGA
* *
15297708 TTTTTGAAACTTTTTGTGGTTAGGGAT
1 TTTTTGAAACTTTTTGTCGATA-GGAT
15297735 TTTTTGAAA-TTTTT-TCGATAGGAT
1 TTTTTGAAACTTTTTGTCGATAGGAT
15297759 TTTT
1 TTTT
15297763 GGCCCAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
24 8 0.31
25 4 0.15
26 5 0.19
27 9 0.35
ACGTcount: A:0.20, C:0.04, G:0.20, T:0.56
Consensus pattern (26 bp):
TTTTTGAAACTTTTTGTCGATAGGAT
Found at i:15299952 original size:26 final size:26
Alignment explanation
Indices: 15299923--15299973 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15299913 CCGGTCTGAT
15299923 CTTAGACGGGGAATGAACTCCGTATG
1 CTTAGACGGGGAATGAACTCCGTATG
* *
15299949 CTTAGGCTGGGAATGAACTCCGTAT
1 CTTAGACGGGGAATGAACTCCGTAT
15299974 CCCTAAGTCA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAATGAACTCCGTATG
Found at i:15300844 original size:26 final size:26
Alignment explanation
Indices: 15300808--15300866 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
15300798 CTTGGACCGG
*
15300808 TCCG-ATG-TTAGACTAGGAATGAAC
1 TCCGTATGCTTAGACTACGAATGAAC
15300832 TCCGTATGCTTAGACTACGAATGAAC
1 TCCGTATGCTTAGACTACGAATGAAC
*
15300858 TCTGTATGC
1 TCCGTATGC
15300867 CTAAGTCAAC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 4 0.13
25 3 0.10
26 24 0.77
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTACGAATGAAC
Found at i:15301277 original size:897 final size:898
Alignment explanation
Indices: 15292031--15305107 Score: 15087
Period size: 897 Copynumber: 14.6 Consensus size: 898
15292021 ACTTCGTATG
* * * * *
15292031 CTTACACTGGGAATGAACTCCGTAAGCCCTAAGCCAACCGATGAAACTAGCGAGCGGGCAGGCGA
1 CTTAGACTGGGAATGAACTCCGTATG-CCTAAGCCAACCGACG-AA--A-CGAGCGGGCGGGCGG
* * * * *
15292096 GCGCGCACTACGCCGGCTAGAGACACGGGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGGG
61 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
15292161 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATA
126 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
15292226 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTAT
191 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * ** * *
15292291 GAAACCTTTTACGGTTCTAGATTTTGTTAAAATTTTTTCGGAGGGAGTTTTGGCCACAAACTTGG
256 GAAACTTTTTGCGGTTCGGGATTTT-TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
* *
15292356 TAGACGTGATCGTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTAC
320 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * *
15292421 AAGATTTTGTGACCATTTGAAAAAAGTGTTCGCATTTCATACACTTTAATGGCTACTGACAGCAA
385 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
15292486 ACCTGTAAAATCTCAAATGTTCTTTAAGGGAGTATGAGTTCTCGAGGTTTGATGAGGGATA-GGG
450 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
15292550 CCCAATATAAGGGCCAAGTATCAGCACCCATCGCACATCATGTGTGCACA-CCCCCGGCCCCCCC
515 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* * *** * * *** *
15292614 GATCGCTAGAA-CCCAAAGCAACCGGTCAAGTTCTCCGTTGATGC-CCGGCGATGGTGTATCGAT
580 GATC-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGAC
* * ** * * * * * ***
15292677 GAAGAAAAATGTGACACCAGCACATGCCCAAGCCCAGCAAGTACTGCCGTAACCCTCGATCTAAT
644 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGT
* * *
15292742 CCGATCTTAGATTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
709 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
15292807 AACCCACAAAACGAGCGTACGGGTGCTCAGCCGACCAGAGGGTCGGGATGAGCAAGCCGGGGATC
774 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATC
** * * * * *
15292872 GGTTGGGTCCCCCTCTGCGTGCTGCCGATCCTACTACCACAACCCTCGGTCTAGTCCGAT
839 GGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCAGAT
* * * * *
15292932 CTTAGGCTAGGAATGAACTCTGTATGCCTAAGCCAACCGATGAAACGAGCGGGCGGGCGAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
15292997 CACTATGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGCGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
** * *
15293062 GCACATCTTCATATTTCTGTGTGCGAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * *
15293127 TTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * *
15293192 TTTTT-CTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTTGCCTCGAACTTGGTAGAT
261 TTTTTGC-GGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*** *
15293256 GTGATCCTTGTATTTTTGTTGTTGTGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
15293321 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTCGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
15293386 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* ** * *
15293451 TATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCTTACACCCCCCGACCCCGCCGATCG
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC-
* * * *
15293516 CCGAAACCCCAATGCCG-CAGTTCAGGTTCTCCGACGATGCTCCGGCGATGGTGCCCCGACGAA-
584 CTGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAG
* * * * * * *
15293579 AAAAATGTGGTACCAGCACATGCCTAAGCCCAGCAAGTGTTGCCGCAA-CCTTCGGTCTGATCCG
648 AAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTT-GGTCCGGTCCG
* * *
15293643 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGGCCGGGAATGAACTCCCTATGCCTAAGTCAAC
712 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * * * * * * *
15293708 CCACGAAACAAGCATGCAGGCGCTTAACTGGCCGGAGGGGCGAGATGCGTAAGCC-AGGGATCGG
777 CCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGA-GGATCGG
* * * * ** * * *** * *
15293772 CCGGGTCTCCCACTACGTGCTGCCGATCCTACTGCCGC-A-TTTCAGACACTTTAAAT
841 CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCAGAT
* * *
15293828 GGCTACCAGACTGGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAACGAGCGGGCGGGCGGG
1 --CT--TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
* * * * * *
15293893 CAGGCAGGCACTATGCCAGCCAAAGAGATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGT
62 C--G--GGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* **
15293958 GGGTTTAGGCACATCTTCATATTTCTTCATGCCAATGCCATTTTTACAGCTTGTAAATTCATACA
123 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * *
15294023 ATGGTCCCTTGAGCCCTCACGTGAAGTTTTATGGCAAGACGACTCGTTTTCTATTTTTCAAGATT
188 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* ** *
15294088 TTTGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTTTGAAGGATTTTTGGCCCCAAACTT
253 TTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* *
15294153 GGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGT
318 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
*
15294218 ACAAGATTTTGTGACCATTTGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCAGC
383 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
*
15294283 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGG
448 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
15294348 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGG-CCCC
513 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * ** * * * * ** ***
15294412 TCGATCGTCGGAACCCCAATTCGACCGTATGCCTAAG-TCAACCCATGAAACGAGGGTGCGA-GC
578 CCGATCCT-GGAACCCCAA-T-G-CCGTCGGTC-AGGTTC-TCCGATGATGC-TCCG-GCGATG-
*** * * * **** * * * * *
15294475 GCTTAACAGGCCATAGGGGCGGGATGC-GCTAGCCGAGGATTGATCAGGTCCCCCTCTGTGTGCT
634 G-TGCCCCGACGA-A---GAAAAATGCGGC-A-CC-A-G---CA-CA--T---GC-CTGAG-CCC
* * * * * * * * * * *
15294539 ACCGATCCTACTGTCGTAACCCTCGGTCAGATCTGATCTTAGACTAGGAATGAACTCCATATGCT
679 AGC-AT-GTGCTGCCGCAACCCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCT
* * * * *
15294604 TAGACTAGGAATGAACTCCGTATGCCTAAGTTATCCCACGAAACGAGCGTTCGGGCGCTCAGTCG
742 TAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
* * * * *
15294669 ACCAGAGGGGCGGGATGCACAAGCTG-GCGATCGACCGGGTCCCCCTCTGCGTGCTACTGATCCT
807 ACCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCT
* * * *
15294733 GCTACTGCAACCCTCGGTCTAGTCCGAT
871 GCTGCCGCAACCCTCGGTCTGGTCAGAT
* * * * *
15294761 CATAGACTGGGAATGAACTCCGTATGCCGAAGCCAATCGACGAAATGAGTGGGCAGGCGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A---CG-A-GCGGGCGGG
* * *
15294826 CGGGCGGGCACTACATCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCGCTAGGGTGGTAGGT
58 CGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * *
15294891 GGGTTTCA-GCCCATCTTTATATTTCTACATGCAAATGCCATTTTTATGGCTTGTAAAATCATAC
123 GGGTTT-AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
15294955 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
187 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * * * *
15295020 TTTAAAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGAAAGAAGTTTTGGTCCCAAACT
252 TTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
15295085 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACA-TCAGCTAAAAACTTGAAGT
317 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGT
*
15295149 GTACAAGATTTTGTGACCATTTGAAAAAAGTGACCCCATTTCAGACACTTTAATGGCTACTGGCA
381 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
15295214 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATA
446 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
15295279 GGGGGCCAATATAAGGGCCAAGTACCAGCACCAATCGCACATCATGTGCGCACACCCCCTGG-CC
511 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
** * * * * * * *
15295343 CCTTGATCGCCGGAACCTCAATGCTGGCGGTCAGGTTCTCCGACGATTCTCCGAG-GACGGTGCC
576 CCCCGATC-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCG-GCGATGGTGCC
* * * *
15295407 TCGACGAAGAAAAATACGGCACCAGCACTTG-CTCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
639 CCGACGAAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTTGG
* *
15295471 TCCGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCC
703 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * ** *
15295536 TAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAG-CTAGCCAGAGGGATGGGATACGCAAGCC
768 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCC
* * ** * * *
15295600 GGGGATCGGGCGGGTCCCCCTCTGTTTGCTACCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTG
832 GAGGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCAG
15295665 AT
897 AT
* *
15295667 CTTAGATTGGGAATGAA-TGCTGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGG
1 CTTAGACTGGGAATGAACT-CCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGG
* *
15295727 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGAGTTTT
65 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* * *
15295792 GGTACATCTTCATATTTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTG
130 GGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* ** * *
15295857 CTTTAAGTGTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTAAA
194 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * * * *
15295922 ACTTTTTGTGGTTCCGAATTTTTTTAAATTTTTTCGGATGGGGTTTTGGCCCCAAACTTGGTAGA
259 ACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * * *
15295987 CATGATCCTTGTATTTTTTTTGGCATGCAAAAAAAAATTCAGCTAAAAAATCGAATTGTACAAGA
324 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
15296052 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
389 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* * * *
15296117 GTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTCAAGCTTTGATAAGGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
15296182 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCTCGG-CCCCCCGATC
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
** *
15296246 ACCAGAACCCCAATGCCG-CTGGTCAGGTT-T-CGATGATGCTCCGGCGATGGTGCCCCGAGGAA
584 -CTGGAACCCCAATGCCGTC-GGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAA
* * * * ** *
15296308 GAAAAATGCGACACCAGCACATTCCTGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCTAGTCTG
647 GAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCG
*
15296373 ATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
712 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
** * * * *
15296438 CCATAAAACAAGCGTACGGGTGCTTCAGCCCG-CCAGAGGGGCATGGATGCGGCAAGCCGAAGGA
777 CCACGAAACGAGCGTGCGGGCGC-TCAG-CCGACCAGAGGGGC-GGGATGC-GCAAGCCG-AGGA
* * * * * * * *
15296502 TCGGACCTGGTCCCCCTCCGCATGCTGTCGATCATGCTG--GTCATAGCCCTCGCTCTAGTCTGA
837 TCGG-CCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG-CA-A-CCCTCGGTCTGGTCAGA
15296565 T
898 T
* * * * *
15296566 CTATAGACTAGGAATGAACTCTGCATGGCCTAAGCCAATCGATGAAACGAGCGGGTGGGGGCGGA
1 CT-TAGACTGGGAATGAACTCCGTAT-GCCTAAGCCAACCGACGAAACGAGC------GGGCGG-
* * * * *
15296631 CCGGGCCGGCACTACATCGGCCAGAGAGACAGAGATGTGCAAGCCGTGGATCGATAGGGTGGTAG
57 GCGGGCGGGCACTACGTCGGCCAGAGAGAC-GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
* *
15296696 GTGGGTTTAGGCA-ATTCTTCATATTTCTACATGCCCAATGCCATTTTTATGGCTTCTAAATTCA
121 GTGGGTTTAGGCACA-TCTTCATATTTCTGCATG-CCAATGCCATTTTTATGGCTTGTAAATTCA
* *
15296760 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA-AACTCG-TTTCTATTTTTCAA
184 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
* * **
15296823 GATTTTTGAAACTTTTTGCGGTTTGGAATTTTTT-AAATTTTTTCGGAAGGAGTTTTGAAACCCA
249 GATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG-GCCCCA
* * * *
15296887 AACTTAGTAGATGTGATCCTTGTATTTTTTGTTGACATGCACAAAAAGATTCAGCTAAAAACTCG
313 AACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
* *
15296952 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTC-GCCACTTTAATGGCTAT
377 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTAC
* *
15297016 TGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAT
441 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
15297081 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAAATTATGTACGCACACCCCCC
506 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * * * * *
15297146 TGACCCCCCGATCGTCGAACCCTAATACCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGT
571 GGCCCCCCCGATCCTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGT
* * ** *
15297211 GCCCCGACGAAGAAAAATGCCGTACCAGCACATGCCTGAGCCCAGCATGTGCTGTTGCAACCCTC
636 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTT
* * *
15297276 GATCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACT--G---G------G--TG
701 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* * *
15297328 CCTAAGTCAACCCACGAAACGAGCGTACGGGCGATCAACCGACCAGAGGGGCGGGATGCGCAAGC
766 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGC
* ** * * * * * *
15297393 CG-GGCATCGGTCGGGTCCCATTCTACGTGTTGTCAAT-CTTCTGCCGCAACCCTC-GTCGGGTC
831 CGAGG-ATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGT-
15297455 CA-AT
894 CAGAT
* * * *
15297459 CTTAGACTGGGAATGAACTCTGTACGCCTAAGCCAACCGACGAAATGGGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* *
15297524 CACTATGTCGGCCTGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* *
15297589 GTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
15297654 TTAAGCCTTCACGTG-AGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
15297718 TTTTTGTGGTTAGGGATTTTTTGAAATTTTTTC-GATAGGATTTTTGG-CCCAACCTTGGTAGAC
261 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGA-AGGAGTTTTGGCCCCAAACTTGGTAGAC
15297781 GTGATCCTTGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
15297845 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
15297910 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAAGTTCCTTCGAGG-TTGATGAGGGATACGGGGG
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTG-AGTT-C-TCGAGGTTTGATGAGGGATA-GGGGG
* *
15297974 CCAATATAAGGGCCAAGTGCCAGCA-CCATCG--CATCATGTGCGCACACCCCCCAGCCCCCCCG
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * *
15298036 ATCCTCGAGAA-CCCAA-GCCG--GAGTCAGGTTCT-CG-GGCTGCT--GG-GA---TG-CCTGT
581 ATCCT-G-GAACCCCAATGCCGTCG-GTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCG-
* * * * * * * *
15298088 AAG-TGGAAAATGTGGCACCATCACATGCCTGA--CC-GCA-ATGCTACCG-TACCCTTGG--CG
642 ACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCG
* *
15298145 GTCCTGATCTTAGACTGGGAATGCACT-CGTATTCTTAGACTGGGAATGAACTCCGTTATGCCTA
707 GTCC-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG-TATGCCTA
* *
15298209 AGTCAACCTCACGAAACAGAGCGTGC-GGC-CTCAGCCGGCCAGAGGGGCGGGATGC-CAA-CAG
770 AGTCAACC-CACGAAAC-GAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCG
* ** * * * * * *
15298270 GGGATC-GTTGGGTACCCCTCTGTCGTGCTGCAGATCTTCGTTG-AG-AA-CCTC-GTCAGG-C-
833 AGGATCGGCCGGGTCCCCCTCTG-CGTGCTGCCGATCCT-GCTGCCGCAACCCTCGGTCTGGTCA
15298328 GAT
896 GAT
* * ** *
15298331 CTTAGACTGGGAATG-ACT-CGTATG-CT-A---AACC-ACGAATACGGGGGGGCAAGCACGGGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA-ACGAGCGGGC--GGGCGGGC
* * *
15298388 GGGCACTACGCCGCCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTT
63 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
**
15298453 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATTTCTTGTAAATTCATACAATGGT
128 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * **
15298518 CCCTTAAGCTTTCACGTCAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTCAA
193 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* *
15298583 AACTTTTTGCGGTTCGAGATTTTTTTAAAATTTTTT-GACAAGGAGTTTTGGCCCCAAACTTGGT
258 AACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCG-GAAGGAGTTTTGGCCCCAAACTTGGT
* * ** * * *
15298647 AGACATGATCCTTGTATTTTTTTTCCCTTGCATAAAAAAATTCAGCTAAAAACTCGAAGTGGACA
321 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
15298712 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAA
386 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * * *
15298777 CCTATAAAATCTGAAATGCTCTTTAAGAGGGCGTGAGTTCTTGAGGTTTGATGAGGGATACGGGG
451 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
15298842 CCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGCCCCCCGG
516 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * ** * * * * **
15298907 ATCATCAGAAACCCAATGCCACCAGTCAGGTTCTCCGGTGATGCTCCGACGATGGTACCCCGGTG
581 ATCCT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACG
* ** * * *
15298972 AAGAAAAATGCGACACCAGCACAT-TTTCGAGCCCAGTATGTGTTGCCCCAA--C-----CC--T
645 AAGAAAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGT
15299027 CC-ATC-----C-----A-G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
709 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * ** * *
15299075 AACCCATGAAACGAGCGGGCGGGTGCTCAGCC-AGCCAGAGGGGCAAGATGCACAAGCCGAGAAT
774 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGA-CCAGAGGGGCGGGATGCGCAAGCCGAGGAT
* * * * * * * *
15299139 CAGACGGATCCCCCTTTACATGCTGCCGATCCTGCTGTCGCAACCCTTGGTCTGGTTC-GAT
838 CGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGG-TCAGAT
** *
15299200 CTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACGAAACAAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-CGAGCGGGCGGGC--G
* * *
15299265 CAGGCGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGT
60 --GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
15299330 GGGTTTAGGCACATCTTCATATTTCTGCATGCTAATGCCATTTTTATGGCTTGTAAATTCGTACA
123 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * * *
15299395 ATGGTCCCTTCAGCCTTTACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTATTTTTCATGACT
188 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * *
15299460 TTTGAAACCTTTTGCGG-TCTGGGATTTTTT-TAATATTTTTCGGAAGGTGTTTTGGCCCCAAAT
253 TTTGAAACTTTTTGCGGTTC-GGGATTTTTTAAAAT-TTTTTCGGAAGGAGTTTTGGCCCCAAAC
*
15299523 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACCCGAAGT
316 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
15299588 GTACAAGATTTTGTGACGATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCA
381 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * *
15299653 GGAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTATCAAGGTTTGATGAGGGATA
446 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
*
15299718 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGACC
511 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCC
* * * * ** *
15299783 CCTCCGATCGCCGGAACCCCAATGTCGTCGGTCAGGTTCTCTGGCGATGCTCCGGTGATGGTGCC
575 CCCCCGATC-CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCC
* * * ** * * * * *
15299848 CCGACGGAGAAAAATGCAGCACCAGCACATGCCCGAGGTCGGCATGTGCTGCTGTAACCCTCGTT
639 CCGACGAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGT
* * * *
15299913 CCGGTCTGATCTTAGACGGGGAATGAACTCCGTATGCTTAGGCTGGGAATGAACTCCGTATCCCT
704 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * *
15299978 AAGTCAACCCATGAAACAAACGTCCGGGCGCTCAGCCGGCCAGATGGGCGGGATGCGCAAGTCGG
769 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGA
* ** * * * * *
15300043 GGATCAGTTGGGTCCCCCTCTACGTGCTGTCGATCCTGTTGCCCACAACCCTTGGTCTGGTTCA-
834 GGATCGGCCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTG-CCGCAACCCTCGGTCTGG-TCAG
15300107 AT
897 AT
* * ** * * * *
15300109 CTGAGACTGGGAATGAACTCTGTATGCCTAAGCCAAATGACGAAA-TA-------AGCAGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * *
15300166 CACTACGCCGGCCAAAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGATGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* ** *
15300231 GCACATCTTCATATTTTTGTGTGCCAATGCCAATTTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
15300296 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * * * *
15300361 TTTTTGCGGTTCAGGATTTTTTTAAATTTTTTCAGAATGAGTTTTGGACCCAAACCTAGTAGACG
261 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* * *
15300426 GGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
*
15300491 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * * * * * *
15300556 AAAATCTTAAGTGTTTTTTAAGAGGGTGTGAGTTCTCGAGATTTAATGAGGGATA-GGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
*
15300620 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCGGCCCCCCCGATCAC
521 ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC-C
*
15300685 TGGAACCACAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAA
585 TGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAA
* * * *
15300750 AAATGCGGCACTAGCACATGCCTGTGCCCAGCATGTGCTGCCGCAACCCTTGGACCGGTCCGATG
650 AAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATC
* ** *
15300815 TTAGACTAGGAATGAACTCCGTATGCTTAGACTACGAATGAACTCTGTATGCCTAAGTCAACCCA
715 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * * ** * *
15300880 CGAAACGAGTGTGCGGGCACTCAACCGACCAGAGGGACAGGATGCTTAAGACGAGGATCGGCCAG
780 CGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGG
* * * * * *
15300945 GTCCCCCTCTGCGTGTTCCCGATCCTGCTACTGCAAGCCTCGGTCCGGTCAGAT
845 GTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCAGAT
* * *
15300999 CTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAACAAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
*
15301064 AACTACGTCGGCCAGAGAGAC-GGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
**
15301128 GCA-ATTCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
131 GCACA-TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
*
15301192 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* ** *
15301257 CTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGAACCCAAACTTGGTAGAT
260 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
15301322 GTGATCCTTGTATTTTTGTTGACATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* * * *
15301387 TTTGTGACCATTTGAAAAAAGTGTGCCCATTTTC-GCCACTTTAATGGCTATTGGCAACAAACCT
390 TTTGTGACCATTTGAAAAAAGTGTCCCCA-TTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* *
15301451 ATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGATGGATAGGGGGCCA
454 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
15301516 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCTCCGATC
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * * * * * *
15301581 GTCGAAACCCATTGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCAATGGTGCCCCGACGGAGA
584 CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGA
* ** * * * * *
15301646 AAAATGCGGCACCAGCACATG-CTCGAGGCTGGCATGTGCTACCGCAACCTTTGTTTCGGTCTGA
649 AAAATGCGGCACCAGCACATGCCT-GAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGA
* * * * *
15301710 TCTTAGACGGGGAACGAACTCTGTATGCTTAGGCTGGGAATGAACTCCGTATCCCTAAGTCAACC
713 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * ** * * *
15301775 CATGAAACAAGCGTCCGGGCGCTCAGCCGGTCAGATGGGTGGGATGCGCAAGTC-AGAGATCGGC
778 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAG-GATCGGC
* * * * *
15301839 CGGGTCCCCCTTTGCGTGCTCCCAATCCTGTTGCCACAA--------C----C----
842 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCAGAT
** * * * *
15301880 C-T---C-------G-A-TCCGTATGCCTAAGCCAAATGATC-AAA-TA-------AGTGAGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAAACGAGCGGGCGGGCGGGCGG
*
15301923 GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
65 GCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTA
* *
15301988 GGCACATCTTCATATTTTTGCATGCTAATGCCA-TTTTA----TTGTAAATTCATACAATGGTCC
130 GGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCC
* * * * * *
15302048 CTTAAGCCTTCACGTGAGGTTTAATGGCAAGATGACTTGTTTTCTATTATTCATGATTTTTGAAA
195 CTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAA
* * * * *
15302113 CTTTTTGCGGTTCGTGATTTTTTAAAATCTTTT-GGAAAGAGCTCTGGCCCCAAACTTGGTAGAC
260 CTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
* *
15302177 GTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
* *
15302242 TTTGTTACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
*
15302307 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATA-GGGGCCAA
455 TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
* *
15302371 TATAAGGGCTAAGTACCAGAACCCATCGCACATCATGTGCGCACA---------CCCCCCGATCT
520 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC-
** * * *
15302427 CTGGAACCCCAATGCCACCGGTCAGGTTCTCCGGTGATGCTCCGGTGATGGTGCCCCGATGAAGA
584 CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGA
* *
15302492 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTACTGCCACAACCC----T-C-G---G--
649 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGAT
* *
15302546 --T---CT--G---G---TCCG-AT-CTTAGACTGGGAATTAACTCCATATGCCTAAGTCAACCC
714 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * * * *
15302596 ACGAAACGAGTGTGCGGGCGCTCAGTCGGCCAGAAGGGTGGGATGCACAAGCTGAGGATCGGCTG
779 ACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCG
* * * * ** *
15302661 GGTCCCCCTCTACGTGCTGGCGATCCTGCTGCCGTAACCCTCAGTCCAGTCCA-AC
844 GGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGT-CAGAT
*
15302716 CTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * * *
15302781 CACTACGTCGACGAGAGAAACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTTGGTTTGG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
* * ** * *
15302846 GCACTTCTTCTTATTTCTGTGTGCTAATGCCATTTTTATGGCTTGTAAATTCATATAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* * * **
15302911 TTAAGCCTTCACGTGAAATTTCATGGCAAGACGACTCGTTTTATATATTTCACGATTTTCAAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
* * * * *
15302976 TTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGCGTTTTGGCCCCAAACTTGGTAGACA
261 TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
* *
15303041 TGATCCTTGTATTTTTGTTGGCATGCA-TAAAAAATTCAGCTAAAAACTCGAAGTGTTCAAGATT
326 TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
* **
15303105 TTGCGACCATTTGAATTAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
391 TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
* * *
15303170 AAAATCTCAAGTGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATACGGGGCCAAT
456 AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
* * * * *
15303235 ATGAA-GGCCAAGTGCCAGCACCCATCGCTCATCATGTGCGCGCACCCCCC-GACCCCTCGATCA
521 AT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC-
** * ** * * *
15303298 CCAGATCCTTAATGCCGTCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCTCGACGAAGA
584 CTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGA
* * * * * * *
15303363 AAAATGTGGCACCAACACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCTGAT
649 AAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGAT
* *
15303428 CTTAGACTGGGAACGAACTCCAG-ATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACC
714 CTTAGACTGGGAATGAACTCC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * * *
15303492 CACGAAATGAGCGTGCAGGCGCTCAGCCGACCAAAAGGGCGGGATACGCAAGCCGGGGATCGACC
778 CACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCC
* * * * * * * *
15303557 GGGTCCCCCTCTACATGCTGTCGATCCTACTGGCGTAACCCTTGGTCTGGTCTGAT
843 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCAGAT
* * * * * **
15303613 CTTAGACTGGGAATGAATTTCGTATGCTTAAGCCAATCGATGAAACGA--------GCAAGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* * * *
15303670 CACTACGCCAGCCAAAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
66 CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
*
15303735 GCACATCTTCATATTTCTGCATGCCAATGCCATTCTTATGGCTTGTAAATTCATACAATGGTCCC
131 GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
* *
15303800 TTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAAC
196 TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
*** * *
15303865 TTTTTATAGTTCGGGATTTTTTAAAATTTCTTT-GGAAGGAGTTTTAGCCCCAAACATGGTAGAC
261 TTTTTGCGGTTCGGGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGAC
*
15303929 GTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
325 GTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGAT
*
15303994 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTACTGGCAGCAAACCTG
390 TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTG
* * * * *
15304059 TAAAATGTCAAAATGCTCTTTAAAGGGGTGTGAGTTGTCAAGGTTTGATGAGGGATAGGGGCCCA
455 TAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* *
15304124 ATATAAGGGCCAAGTACTAGCACCCATCACACATCATGTGCGCACATCCCCCCTGGCCCCCCCGA
519 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC-GGCCCCCCCGA
* * * ** * * ** **
15304189 TCGTCGGAACCCCATTGCCGCCCATCAAGTTCTCTGGCGATGCTCCGGCGATGGTGCCCCGGTGA
582 TCCT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGA
* * * * **
15304254 AGAAAAATACGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCGTAACCCCCGGTCCGGTCC
646 AGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCC
* * * * *
15304319 CATCTTTGACTGGGAATGTACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAA
711 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * * * *
15304384 CCCACGAAACGAGTAG-GCAGGCACTAAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATTG
776 CCCACGAAACGAG-CGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCG
** *
15304448 ATCGGGTCCCCC-CATGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGTTTC-GAT
840 GCCGGGTCCCCCTC-TGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTG-GTCAGAT
*
15304507 CTTAGACTGGGAATGAACTCCGTATGCCTCAGCCAACCGACGAAACGAGCGGGCGGACGTGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G-GG-C----GGG
15304572 CCGACAGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
58 -CG---GGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
*
15304637 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTTATGGCTTGTAAATTC
119 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA-TTTTTATGGCTTGTAAATTC
* * *
15304702 ATAGAATGGTCCCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCA
183 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * *
15304767 CGATTTTTGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCACA
248 CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCA
*
15304832 AACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACTCGACATAAAAAATTCA
313 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATG-----------C-ACA-AAAAAATTCA
15304897 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
365 GCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACT
* *
15304962 TTAATGGCTACTGACAGCAAACCTGTAGAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
430 TTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGA
** * *
15305027 GGTTTGATGAGGGATACAGGGACAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGC
495 GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGC
15305092 GCACACCCCCCGGCCC
560 GCACACCCCCCGGCCC
15305108 TTATATTGTC
Statistics
Matches: 10391, Mismatches: 1382, Indels: 782
0.83 0.11 0.06
Matches are distributed among these distances:
820 115 0.01
821 4 0.00
822 3 0.00
825 1 0.00
828 2 0.00
830 1 0.00
833 2 0.00
836 1 0.00
837 2 0.00
840 2 0.00
841 1 0.00
842 1 0.00
845 9 0.00
846 92 0.01
847 3 0.00
848 2 0.00
849 22 0.00
850 1 0.00
854 54 0.01
855 195 0.02
856 112 0.01
857 92 0.01
858 5 0.00
860 38 0.00
861 78 0.01
862 290 0.03
863 144 0.01
864 50 0.00
865 33 0.00
866 8 0.00
867 152 0.01
868 117 0.01
869 68 0.01
870 68 0.01
871 294 0.03
872 23 0.00
873 12 0.00
874 25 0.00
875 22 0.00
876 11 0.00
877 50 0.00
878 21 0.00
879 23 0.00
880 189 0.02
881 290 0.03
882 420 0.04
883 143 0.01
884 49 0.00
885 10 0.00
886 5 0.00
887 3 0.00
889 264 0.03
890 162 0.02
891 359 0.03
892 88 0.01
893 569 0.05
894 416 0.04
895 650 0.06
896 307 0.03
897 841 0.08
898 348 0.03
899 47 0.00
900 102 0.01
901 74 0.01
902 2 0.00
903 20 0.00
904 470 0.05
905 7 0.00
906 225 0.02
907 14 0.00
908 119 0.01
909 67 0.01
910 27 0.00
911 74 0.01
912 274 0.03
913 135 0.01
914 221 0.02
915 175 0.02
916 3 0.00
917 1 0.00
918 1 0.00
919 1 0.00
920 1 0.00
921 3 0.00
922 7 0.00
923 2 0.00
924 1 0.00
925 6 0.00
926 11 0.00
927 98 0.01
928 111 0.01
929 48 0.00
930 10 0.00
931 151 0.01
932 6 0.00
933 497 0.05
934 2 0.00
935 2 0.00
936 1 0.00
937 13 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
CACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC
TTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATT
TTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGT
AAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAAT
ATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCCT
GGAACCCCAATGCCGTCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCCGACGAAGAAA
AATGCGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCGATCT
TAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGCGGGATGCGCAAGCCGAGGATCGGCCGGG
TCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCGGTCTGGTCAGAT
Found at i:15301740 original size:26 final size:26
Alignment explanation
Indices: 15301711--15301761 Score: 66
Period size: 26 Copynumber: 2.0 Consensus size: 26
15301701 TCGGTCTGAT
*
15301711 CTTAGACGGGGAACGAACTCTGTATG
1 CTTAGACGGGGAACGAACTCCGTATG
* * *
15301737 CTTAGGCTGGGAATGAACTCCGTAT
1 CTTAGACGGGGAACGAACTCCGTAT
15301762 CCCTAAGTCA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.25, C:0.20, G:0.29, T:0.25
Consensus pattern (26 bp):
CTTAGACGGGGAACGAACTCCGTATG
Found at i:15305978 original size:26 final size:26
Alignment explanation
Indices: 15305940--15305992 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15305930 CCAGTCTAAT
* *
15305940 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
*
15305966 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAAAGAACTCCGTATG
15305992 C
1 C
15305993 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAAAGAACTCCGTATG
Found at i:15306891 original size:26 final size:26
Alignment explanation
Indices: 15306840--15306892 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15306830 CCGGTCTGAT
*
15306840 CTTAGACTAGGAATCAATTCCATATG
1 CTTAGACTAGGAATCAACTCCATATG
* * *
15306866 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCATATG
15306892 C
1 C
15306893 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCATATG
Found at i:15307106 original size:900 final size:896
Alignment explanation
Indices: 15305194--15307158 Score: 2953
Period size: 900 Copynumber: 2.2 Consensus size: 896
15305184 CTCTGTGTGC
* * * * * *
15305194 TGCCGATCCTGCTGCCGCAACCCTTGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTACGC
1 TGCCGATCCTGCTGCTGCAACACTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
15305259 CTAAGCCAACCGACGAAACGA----ACGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATG
66 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGCTG
*
15305320 CACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAA
131 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAA
*
15305385 TGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGC
196 TGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCC
* * *
15305450 AAGACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCAGGATTTTTTAAAAT
261 AAGACGACTCGTTTTCTATTTCTCACAATTTTTGAAACTTTTTACAGTTCAAGATTTTTTAAAAT
* *
15305515 TTTTTCTGAAGTGGTTTTGGCCCCAAACTTGTAGATGTGATCCTTGTATTTTTGTTGGCATGCAC
326 TTTTTCGGAAGTGGTTTTGGCCCCAAACTTGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
15305580 AAAAAAATTCAGGTAAAAACTCAAAGTGTGCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
391 AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* * *
15305645 TTTTAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGTGGTG
456 TTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
15305710 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGC
521 CGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGC
* * * * *
15305775 ACATCATGTGTGCAAACCCCCCGGCCCCTCTGATCGTCGAAACCCCAATACCGCCGGCTTGGTTC
586 ACATCATGTGCGCAAACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATACCGCCGGCTAGGATC
*
15305840 TCCGACGATGCTACGACGATGGTGCCCCGACGAAGAAAATACGACACCAGCACATGCCCGAGCCC
651 TCCGACGATGCTACGACGATGGTGCCCCGACGAAGAAAAAACGACACCAGCACATGCCCGAGCCC
* * * * **
15305905 AGCACGTGCTGCCACAACCTTTGGTCCAGTCTAATCTTAGACTGGGAAAGAACTCTGTATGCTTA
716 AGCACGTGCTGCCACAACCCTCGGTCCAGTCTAATCTTAGACTAGGAAACAACTCCATATGCTTA
*
15305970 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGCTCAGCCGGC
781 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGC
* * * *
15306035 CAGAGGGGCAGGATGCGCTAACCGGGGATCAATCGGGTCCCCCTCTACGTGT
846 CAGAAGGGCAGGATGCACTAACCGGGGATCAACCAGGTCCCCCTCTAC-TGT
* * *
15306087 TGCCGATCCTGCT-ATCGCAACACTCAATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATG
1 TGCCGATCCTGCTGCT-GCAACACTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15306151 CCTAAGCCAACCGAAGAAACGAGCGGGCAGGCAGGCGGGCACTACACCAGCCAAAGAGACGGGCT
65 CCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGCT
*
15306216 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCA
130 GCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCA
15306281 ATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGC
195 ATGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGC
* **
15306346 CAAGCCGACTCGTTTTCTATTTCTCATGATTTTTGAAACTTTTTACAGTTCAAGATTTTTTAAAA
260 CAAGACGACTCGTTTTCTATTTCTCACAATTTTTGAAACTTTTTACAGTTCAAGATTTTTTAAAA
*
15306411 TTTTTTCGGAAG-GAGTTTTGGCGCCAAACTTGGTAGACAG-GATCCTTGTATTTTTGTTGGCAT
325 TTTTTTCGGAAGTG-GTTTTGGCCCCAAACTT-GTAGA-AGTGATCCTTGTATTTTTGTTGGCAT
* *
15306474 GCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
387 GCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTC
*
15306539 CCCATTTCGA-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGG
452 CCCATTT-GAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGG
* *
15306603 GGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTTCCAGCACCC
516 GGGTGCGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCC
* * * * *
15306668 ATCGCACATCATGTGCGCACACCCGCCCGGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGG-T
581 ATCGCACATCATGTGCGCAAACCC-CCCGGCCCCCCCGATCGTCGAAACCCCAATACCGCCGGCT
* * ** * * *
15306732 CAGGATCTCCGACGCTGCTCCGGTGATGGTGCCCCGATGAAGAAAAAAGTGGCACCAGCACATGC
645 -AGGATCTCCGACGATGCTACGACGATGGTGCCCCGACGAAGAAAAAA-CGACACCAGCACATGC
* * * * * * *
15306797 CCGAGCCCAGCATGTGCTGGCGCAACCCTCGGTCCGGTCTGATCTTAGACTAGGAATCAATTCCA
708 CCGAGCCCAGCACGTGCTGCCACAACCCTCGGTCCAGTCTAATCTTAGACTAGGAAACAACTCCA
* * *
15306862 TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCT
773 TATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCT
* * * *
15306927 CAGTCGGCCAGAAGGGCGGGATGCAC-AAGCTGGGGATCAACCAGGTCCTCCTCCGTA-TGT
838 CAGCCGGCCAGAAGGGCAGGATGCACTAA-CCGGGGATCAACCAGGTCCCCCT-C-TACTGT
*
15306987 TGCTGATCCTGCTGCTGCAACACTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
1 TGCCGATCCTGCTGCTGCAACACTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
15307052 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGCTG
66 CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGCTG
* * *
15307117 TGCAAGCCATGGATCGATAGGGCGGTAGGTGGGTTTAGGCAC
131 CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
15307159 TATAGACACT
Statistics
Matches: 960, Mismatches: 96, Indels: 25
0.89 0.09 0.02
Matches are distributed among these distances:
893 75 0.08
896 1 0.00
897 244 0.25
898 232 0.24
899 75 0.08
900 329 0.34
901 2 0.00
902 2 0.00
ACGTcount: A:0.25, C:0.25, G:0.26, T:0.24
Consensus pattern (896 bp):
TGCCGATCCTGCTGCTGCAACACTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCCGGCCAAAGAGACGGGCTG
CGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCAGCATGCCAA
TGCCATTTTTATGGCTTGTAAATTGATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGCC
AAGACGACTCGTTTTCTATTTCTCACAATTTTTGAAACTTTTTACAGTTCAAGATTTTTTAAAAT
TTTTTCGGAAGTGGTTTTGGCCCCAAACTTGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCAC
AAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
TTTGAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
CGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAACTACCAGCACCCATCGC
ACATCATGTGCGCAAACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATACCGCCGGCTAGGATC
TCCGACGATGCTACGACGATGGTGCCCCGACGAAGAAAAAACGACACCAGCACATGCCCGAGCCC
AGCACGTGCTGCCACAACCCTCGGTCCAGTCTAATCTTAGACTAGGAAACAACTCCATATGCTTA
GACTAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGC
CAGAAGGGCAGGATGCACTAACCGGGGATCAACCAGGTCCCCCTCTACTGT
Found at i:15307206 original size:20 final size:21
Alignment explanation
Indices: 15307168--15307206 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15307158 CTATAGACAC
15307168 TCAATTGGGTCCAGGCCCAGA
1 TCAATTGGGTCCAGGCCCAGA
*
15307189 TCAATTGGG-CCTGGCCCA
1 TCAATTGGGTCCAGGCCCA
15307207 AATGGGTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.21
Consensus pattern (21 bp):
TCAATTGGGTCCAGGCCCAGA
Found at i:15307261 original size:13 final size:12
Alignment explanation
Indices: 15307243--15307291 Score: 64
Period size: 13 Copynumber: 4.1 Consensus size: 12
15307233 CTTTGTATTA
*
15307243 TTTTTTTTCTCT
1 TTTTTTTTCTTT
*
15307255 TTTTTTTT-TAT
1 TTTTTTTTCTTT
15307266 TTTTTTTTCTTT
1 TTTTTTTTCTTT
15307278 CTTTTTTTTCTTT
1 -TTTTTTTTCTTT
15307291 T
1 T
15307292 GTATTTTATG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
11 10 0.30
12 11 0.33
13 12 0.36
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (12 bp):
TTTTTTTTCTTT
Found at i:15307268 original size:22 final size:22
Alignment explanation
Indices: 15307240--15307285 Score: 76
Period size: 22 Copynumber: 2.1 Consensus size: 22
15307230 TTACTTTGTA
15307240 TTATTTTTTTTCTCTTT-TTTTT
1 TTATTTTTTTT-TCTTTCTTTTT
15307262 TTATTTTTTTTTCTTTCTTTTT
1 TTATTTTTTTTTCTTTCTTTTT
15307284 TT
1 TT
15307286 TCTTTTGTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 5 0.22
22 18 0.78
ACGTcount: A:0.04, C:0.09, G:0.00, T:0.87
Consensus pattern (22 bp):
TTATTTTTTTTTCTTTCTTTTT
Found at i:15307270 original size:21 final size:22
Alignment explanation
Indices: 15307244--15307285 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
15307234 TTTGTATTAT
15307244 TTTTTTTCTCTTT-TTTTTTTA
1 TTTTTTTCTCTTTCTTTTTTTA
*
15307265 TTTTTTTTTCTTTCTTTTTTT
1 TTTTTTTCTCTTTCTTTTTTT
15307286 TCTTTTGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (22 bp):
TTTTTTTCTCTTTCTTTTTTTA
Found at i:15307272 original size:25 final size:25
Alignment explanation
Indices: 15307238--15307286 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
15307228 TTTTACTTTG
15307238 TATTATTTTTT-TTCTCTTTTTTTTT
1 TATTATTTTTTCTT-TCTTTTTTTTT
*
15307263 TATTTTTTTTTCTTTCTTTTTTTT
1 TATTATTTTTTCTTTCTTTTTTTT
15307287 CTTTTGTATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.06, C:0.08, G:0.00, T:0.86
Consensus pattern (25 bp):
TATTATTTTTTCTTTCTTTTTTTTT
Found at i:15307273 original size:23 final size:23
Alignment explanation
Indices: 15307243--15307291 Score: 73
Period size: 23 Copynumber: 2.1 Consensus size: 23
15307233 CTTTGTATTA
15307243 TTTTTTTTCTCTT-TTTTTTTTAT
1 TTTTTTTTCT-TTCTTTTTTTTAT
*
15307266 TTTTTTTTCTTTCTTTTTTTTCT
1 TTTTTTTTCTTTCTTTTTTTTAT
15307289 TTT
1 TTT
15307292 GTATTTTATG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 2 0.08
23 22 0.92
ACGTcount: A:0.02, C:0.10, G:0.00, T:0.88
Consensus pattern (23 bp):
TTTTTTTTCTTTCTTTTTTTTAT
Found at i:15307393 original size:14 final size:14
Alignment explanation
Indices: 15307376--15307452 Score: 51
Period size: 12 Copynumber: 5.9 Consensus size: 14
15307366 TTTTATATAG
15307376 TTATATATTTATTA
1 TTATATATTTATTA
* *
15307390 TTATAT-TATAAT-
1 TTATATATTTATTA
*
15307402 TTATTTA-TTATTA
1 TTATATATTTATTA
15307415 TTAT-TATTT-TATA
1 TTATATATTTAT-TA
*
15307428 TT-T-TATTTATTT
1 TTATATATTTATTA
*
15307440 TTGTATATTTATT
1 TTATATATTTATT
15307453 TATCTAATTA
Statistics
Matches: 50, Mismatches: 6, Indels: 14
0.71 0.09 0.20
Matches are distributed among these distances:
12 20 0.40
13 16 0.32
14 14 0.28
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.69
Consensus pattern (14 bp):
TTATATATTTATTA
Found at i:15307426 original size:28 final size:28
Alignment explanation
Indices: 15307384--15307438 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
15307374 AGTTATATAT
15307384 TTATTATTATATTATAATTTATTTATTA
1 TTATTATTATATTATAATTTATTTATTA
* *
15307412 TTATTATTATTTTATATTTTATTTATT
1 TTATTATTATATTATAATTTATTTATT
15307439 TTTGTATATT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (28 bp):
TTATTATTATATTATAATTTATTTATTA
Found at i:15307429 original size:19 final size:20
Alignment explanation
Indices: 15307376--15307483 Score: 70
Period size: 19 Copynumber: 5.5 Consensus size: 20
15307366 TTTTATATAG
15307376 TTATATATTTAT-TATTA-TA
1 TTAT-TATTTATATATTATTA
* *
15307395 TTATAATTTATTTATTATTA
1 TTATTATTTATATATTATTA
15307415 TTATTATTT-TATATT-TTA
1 TTATTATTTATATATTATTA
*
15307433 TTTATT-TTTGTATA-T-TTA
1 -TTATTATTTATATATTATTA
* *
15307451 TTTATCTAATTATATATCTGTTA
1 -TTAT-TATTTATATAT-TATTA
15307474 TT-TTATTTAT
1 TTATTATTTAT
15307484 CCTATAATAT
Statistics
Matches: 74, Mismatches: 6, Indels: 17
0.76 0.06 0.18
Matches are distributed among these distances:
18 21 0.28
19 24 0.32
20 22 0.30
21 1 0.01
22 3 0.04
23 3 0.04
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.67
Consensus pattern (20 bp):
TTATTATTTATATATTATTA
Found at i:15307450 original size:18 final size:19
Alignment explanation
Indices: 15307415--15307455 Score: 59
Period size: 18 Copynumber: 2.2 Consensus size: 19
15307405 TTTATTATTA
15307415 TTATTATTTTATATTTTAT
1 TTATTATTTTATATTTTAT
15307434 TTATT-TTTGTATA-TTTAT
1 TTATTATTT-TATATTTTAT
15307452 TTAT
1 TTAT
15307456 CTAATTATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
18 12 0.57
19 9 0.43
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (19 bp):
TTATTATTTTATATTTTAT
Found at i:15307480 original size:28 final size:27
Alignment explanation
Indices: 15307447--15307513 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 27
15307437 TTTTTGTATA
*
15307447 TTTATTTATCTAATTATATATCTGTTAT
1 TTTATTTATCT-ATAATATATCTGTTAT
* *
15307475 TTTATTTATCCTATAATATATCTTTTTT
1 TTTATTTAT-CTATAATATATCTGTTAT
15307503 TTTATTTATCT
1 TTTATTTATCT
15307514 GTTCTAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.06
28 31 0.89
29 2 0.06
ACGTcount: A:0.25, C:0.09, G:0.01, T:0.64
Consensus pattern (27 bp):
TTTATTTATCTATAATATATCTGTTAT
Found at i:15308406 original size:18 final size:18
Alignment explanation
Indices: 15308360--15308409 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
15308350 CCGCTCCAGG
15308360 TTTTTTTTTTT-TTTGAA
1 TTTTTTTTTTTATTTGAA
* *
15308377 TTTTTTTGTTTATTTG-T
1 TTTTTTTTTTTATTTGAA
15308394 TTTTTTATTTTTATTT
1 TTTTTT-TTTTTATTT
15308410 AGATTAGGTT
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
17 16 0.57
18 12 0.43
ACGTcount: A:0.10, C:0.00, G:0.06, T:0.84
Consensus pattern (18 bp):
TTTTTTTTTTTATTTGAA
Found at i:15308483 original size:18 final size:16
Alignment explanation
Indices: 15308439--15308514 Score: 62
Period size: 19 Copynumber: 4.2 Consensus size: 16
15308429 TCTTTTCATC
15308439 TTTATTTTTTTATTTT
1 TTTATTTTTTTATTTT
15308455 GTTTGACTTTTCTTTATTTT
1 -TTT-A-TTTT-TTTATTTT
15308475 TTTATTTTTATTTATTTTT
1 TTTA-TTTT-TTTA-TTTT
* *
15308494 TTTATTATTCTATTTT
1 TTTATTTTTTTATTTT
15308510 CTTTA
1 -TTTA
15308515 AATGAAAATT
Statistics
Matches: 50, Mismatches: 4, Indels: 10
0.78 0.06 0.16
Matches are distributed among these distances:
16 4 0.08
17 10 0.20
18 13 0.26
19 15 0.30
20 8 0.16
ACGTcount: A:0.14, C:0.05, G:0.03, T:0.78
Consensus pattern (16 bp):
TTTATTTTTTTATTTT
Found at i:15308682 original size:60 final size:60
Alignment explanation
Indices: 15308536--15309109 Score: 751
Period size: 60 Copynumber: 9.7 Consensus size: 60
15308526 AAACTTTCAA
* * *
15308536 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-AAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
**** *
15308595 -AAAAGGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
*
15308654 AAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
15308714 AAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
1 AAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
* * * * *
15308774 AAAAAAAATATTTTTAAGGAAAAGTTGAAATTATCAATTTTGCTTAGAAATAAAATTTT-
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
* *** *
15308833 GAAAAATGGATTTTTGAGGAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
* * *
15308893 -AAAAAAA-A-TTTTAAGGAAAAGTTGAAAATATCAATTTTTCCTTAGAAAT-AAATTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTTCCTTGGAAATCAAATTTTC
*** *
15308950 -AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
* *
15309009 AAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTT-AAACAT-AAATTTTC
1 -AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAA-ATCAAATTTTC
* *
15309069 --AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAGTTTTCC
1 AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
15309110 CTACACAAAA
Statistics
Matches: 453, Mismatches: 50, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
57 74 0.16
58 71 0.16
59 93 0.21
60 172 0.38
61 43 0.09
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (60 bp):
AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
Found at i:15308757 original size:120 final size:118
Alignment explanation
Indices: 15308536--15309109 Score: 863
Period size: 120 Copynumber: 4.9 Consensus size: 118
15308526 AAACTTTCAA
**
15308536 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTCAAAAGG
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTCAAAAAA
15308601 GGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
66 GGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
* * * *
15308654 AAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAAAAA
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-AAATTTTCAAAAA
* * *
15308719 A-AATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTC
65 AGGAT-TTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
* * *
15308774 AAAAAAAATATTTTTAAGGAAAAGTTGAAATTATCAATTTTGCTTAGAAATAAAATTTTGAAAAA
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-AAATTTTCAAAAA
* * *
15308839 TGGATTTTTGAGGAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAATTTTC
65 AGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
15308893 -AAAAAAA-A-TTTTAAGGAAAAGTTGAAAATATCAATTTTTCCTTAGAAATAAATTTTCAAAAA
1 AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAA-TTTTCCTTAGAAATAAATTTTCAAAAA
*
15308955 GGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
65 AGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
*
15309009 AAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTA-AACATAAATTTTCAAAA
1 -AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAA-ATAAATTTTCAAAA
* * *
15309073 AA-TATTTTTGGGGAAAAGTTGAAAGTATCAGTTTTCC
64 AAGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
15309110 CTACACAAAA
Statistics
Matches: 415, Mismatches: 31, Indels: 20
0.89 0.07 0.04
Matches are distributed among these distances:
116 88 0.21
117 14 0.03
118 97 0.23
119 84 0.20
120 130 0.31
121 2 0.00
ACGTcount: A:0.44, C:0.08, G:0.14, T:0.34
Consensus pattern (118 bp):
AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATAAATTTTCAAAAAA
GGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGTTTC
Found at i:15314791 original size:26 final size:26
Alignment explanation
Indices: 15314762--15314814 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15314752 CCGGTCTGAT
*
15314762 CTTAGACTAGGAATCAATTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
* *
15314788 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
15314814 C
1 C
15314815 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:15315128 original size:20 final size:21
Alignment explanation
Indices: 15315090--15315128 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15315080 CTGTAGACAC
15315090 TCAATTGGGTCCAGGCCCAGA
1 TCAATTGGGTCCAGGCCCAGA
*
15315111 TCAATTGGG-CCTGGCCCA
1 TCAATTGGGTCCAGGCCCA
15315129 AATGGTAAGC
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.21
Consensus pattern (21 bp):
TCAATTGGGTCCAGGCCCAGA
Found at i:15315181 original size:18 final size:19
Alignment explanation
Indices: 15315160--15315203 Score: 63
Period size: 18 Copynumber: 2.4 Consensus size: 19
15315150 TTACTTTGTA
15315160 TTATTTTTTTCTCTTT-TT
1 TTATTTTTTTCTCTTTCTT
*
15315178 TTATTTTTTTTTCTTTCTT
1 TTATTTTTTTCTCTTTCTT
*
15315197 TTCTTTT
1 TTATTTT
15315204 GTATTTTTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
18 15 0.65
19 8 0.35
ACGTcount: A:0.05, C:0.11, G:0.00, T:0.84
Consensus pattern (19 bp):
TTATTTTTTTCTCTTTCTT
Found at i:15315187 original size:21 final size:22
Alignment explanation
Indices: 15315158--15315211 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
15315148 TTTTACTTTG
15315158 TATTATTTTTT-TCTCTTTTTT
1 TATTATTTTTTCTCTCTTTTTT
* *
15315179 TATTTTTTTTTCTTTCTTTTCTT
1 TATTATTTTTTCTCTCTTTT-TT
15315202 T-TGTATTTTT
1 TAT-TATTTTT
15315212 ATGTGTTTTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 10 0.37
22 8 0.30
23 9 0.33
ACGTcount: A:0.07, C:0.09, G:0.02, T:0.81
Consensus pattern (22 bp):
TATTATTTTTTCTCTCTTTTTT
Found at i:15315304 original size:23 final size:23
Alignment explanation
Indices: 15315278--15315351 Score: 87
Period size: 23 Copynumber: 3.2 Consensus size: 23
15315268 TATTTATATG
*
15315278 TATTTTTATA-TAGTTATATATTT
1 TATTATTATATTA-TTATATATTT
* *
15315301 TATTATTATATTATAATTTATTT
1 TATTATTATATTATTATATATTT
*
15315324 TATTATTATTATTATTTTATATTT
1 TATTATTA-TATTATTATATATTT
15315348 TATT
1 TATT
15315352 TATTTTTGTA
Statistics
Matches: 43, Mismatches: 6, Indels: 3
0.83 0.12 0.06
Matches are distributed among these distances:
23 25 0.58
24 18 0.42
ACGTcount: A:0.31, C:0.00, G:0.01, T:0.68
Consensus pattern (23 bp):
TATTATTATATTATTATATATTT
Found at i:15315315 original size:18 final size:17
Alignment explanation
Indices: 15315294--15315357 Score: 69
Period size: 18 Copynumber: 3.8 Consensus size: 17
15315284 TATATAGTTA
15315294 TATATTTTATTATTATAT
1 TATATTTTATT-TTATAT
*
15315312 TATAATTTATTTTATTAT
1 TATATTTTATTTTA-TAT
*
15315330 TAT-TATTATTTTATAT
1 TATATTTTATTTTATAT
*
15315346 TTTA-TTTATTTT
1 TATATTTTATTTT
15315358 TGTATATTTA
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
16 12 0.31
17 11 0.28
18 16 0.41
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TATATTTTATTTTATAT
Found at i:15315343 original size:29 final size:28
Alignment explanation
Indices: 15315296--15315357 Score: 90
Period size: 29 Copynumber: 2.2 Consensus size: 28
15315286 TATAGTTATA
15315296 TATTTTATTATTATATTATAATTTATTT
1 TATTTTATTATTATATTATAATTTATTT
* *
15315324 TATTATTATTATTATTTTATATTTTA-TT
1 TATT-TTATTATTATATTATAATTTATTT
15315352 TATTTT
1 TATTTT
15315358 TGTATATTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
27 2 0.06
28 10 0.32
29 19 0.61
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (28 bp):
TATTTTATTATTATATTATAATTTATTT
Found at i:15315358 original size:10 final size:10
Alignment explanation
Indices: 15315175--15315358 Score: 54
Period size: 10 Copynumber: 17.5 Consensus size: 10
15315165 TTTTTCTCTT
*
15315175 TTTTTATTTT
1 TTTTTATTTA
* *
15315185 TTTTTCTTTC
1 TTTTTATTTA
*
15315195 TTTTCTTTTGTA
1 TTTT-TATT-TA
15315207 TTTTTATGTGT-
1 TTTTTAT-T-TA
15315218 TTTATTATTTA
1 TTT-TTATTTA
*
15315229 TTATTATTTA
1 TTTTTATTTA
*
15315239 TTGTATATTTA
1 TT-TTTATTTA
*
15315250 TTTTT-TTCTT
1 TTTTTATT-TA
*
15315260 TTTGTTA-ATA
1 TTT-TTATTTA
* *
15315270 TTTATATGTA
1 TTTTTATTTA
*
15315280 TTTTTATATA
1 TTTTTATTTA
* *
15315290 GTTATATATT-
1 TTTTTAT-TTA
*
15315300 TTATTATTATA
1 TTTTTATT-TA
* *
15315311 TTATAATTTA
1 TTTTTATTTA
15315321 -TTTTATTATTA
1 TTTTTA-T-TTA
*
15315332 TTATTATTTTA
1 TTTTTA-TTTA
15315343 TATTTTATTTA
1 T-TTTTATTTA
15315354 TTTTT
1 TTTTT
15315359 GTATATTTAT
Statistics
Matches: 130, Mismatches: 27, Indels: 34
0.68 0.14 0.18
Matches are distributed among these distances:
9 8 0.06
10 59 0.45
11 41 0.32
12 22 0.17
ACGTcount: A:0.22, C:0.02, G:0.04, T:0.72
Consensus pattern (10 bp):
TTTTTATTTA
Found at i:15315362 original size:82 final size:80
Alignment explanation
Indices: 15315217--15315368 Score: 175
Period size: 82 Copynumber: 1.9 Consensus size: 80
15315207 TTTTTATGTG
* * * * *
15315217 TTTTATTATTTATTATTATTTATTGTATATTTATTTTTTTCTTTTTGTTAATATTTATATGTATT
1 TTTTATTATTTATTATAATTTATTGTATATTTATTATTTTATTTTTATT-ATATTTATATGTATA
15315282 TTTATATAGTTATATA
65 TTTATATAGTTATATA
*
15315298 TTTTATTATTATATTATAATTTATTTTATTATTATTATTATTTTATATTTTATT-TATTT-T-TG
1 TTTTATTATT-TATTATAATTTATTGTA-TA-T-TTATTATTTTAT-TTTTATTATATTTATATG
15315360 TATATTTAT
61 TATATTTAT
15315369 TTATCTAATT
Statistics
Matches: 60, Mismatches: 6, Indels: 9
0.80 0.08 0.12
Matches are distributed among these distances:
81 10 0.17
82 25 0.42
83 3 0.05
84 6 0.10
85 10 0.17
86 6 0.10
ACGTcount: A:0.27, C:0.01, G:0.03, T:0.69
Consensus pattern (80 bp):
TTTTATTATTTATTATAATTTATTGTATATTTATTATTTTATTTTTATTATATTTATATGTATAT
TTATATAGTTATATA
Found at i:15315367 original size:18 final size:19
Alignment explanation
Indices: 15315318--15315372 Score: 64
Period size: 18 Copynumber: 3.1 Consensus size: 19
15315308 ATATTATAAT
*
15315318 TTATTTTAT-TATTA-TTA
1 TTATTTTATATTTTATTTA
15315335 TTATTTTATATTTTATTTA
1 TTATTTTATATTTTATTTA
15315354 TT-TTTGTATA-TTTATTTA
1 TTATTT-TATATTTTATTTA
15315372 T
1 T
15315373 CTAATTATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 5
0.85 0.03 0.12
Matches are distributed among these distances:
17 9 0.26
18 16 0.47
19 9 0.26
ACGTcount: A:0.25, C:0.00, G:0.02, T:0.73
Consensus pattern (19 bp):
TTATTTTATATTTTATTTA
Found at i:15315397 original size:28 final size:27
Alignment explanation
Indices: 15315364--15315430 Score: 89
Period size: 28 Copynumber: 2.4 Consensus size: 27
15315354 TTTTTGTATA
*
15315364 TTTATTTATCTAATTATATATCTGTTAT
1 TTTATTTATCT-ATAATATATCTGTTAT
* *
15315392 TTTATTTATCCTATAATATATCTTTTTT
1 TTTATTTAT-CTATAATATATCTGTTAT
15315420 TTTATTTATCT
1 TTTATTTATCT
15315431 GTTCTAATTA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
27 2 0.06
28 31 0.89
29 2 0.06
ACGTcount: A:0.25, C:0.09, G:0.01, T:0.64
Consensus pattern (27 bp):
TTTATTTATCTATAATATATCTGTTAT
Found at i:15315936 original size:11 final size:11
Alignment explanation
Indices: 15315899--15315937 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
15315889 CCCAGAAACT
*
15315899 GGTGATCTTCC
1 GGTGAACTTCC
*
15315910 GGTCAACTTCC
1 GGTGAACTTCC
15315921 GGTGAACTTCC
1 GGTGAACTTCC
*
15315932 AGTGAA
1 GGTGAA
15315938 ATTTTCTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.28
Consensus pattern (11 bp):
GGTGAACTTCC
Found at i:15316385 original size:9 final size:9
Alignment explanation
Indices: 15316371--15316415 Score: 54
Period size: 9 Copynumber: 4.7 Consensus size: 9
15316361 TCTTTTCATC
15316371 TTTATTTTT
1 TTTATTTTT
15316380 TTTATTTTT
1 TTTATTTTT
*
15316389 GTTTGACTTTTC
1 -TTT-A-TTTTT
15316401 TTTATTTTT
1 TTTATTTTT
15316410 TTTATT
1 TTTATT
15316416 ATTCTATTTT
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
9 19 0.61
10 4 0.13
11 4 0.13
12 4 0.13
ACGTcount: A:0.11, C:0.04, G:0.04, T:0.80
Consensus pattern (9 bp):
TTTATTTTT
Found at i:15316425 original size:26 final size:30
Alignment explanation
Indices: 15316369--15316430 Score: 78
Period size: 30 Copynumber: 2.2 Consensus size: 30
15316359 ATTCTTTTCA
* *
15316369 TCTTTATTTTTTTTATTTTTGTTTGACTTT
1 TCTTTATTTTTTTTATTTATGTCTGACTTT
15316399 TCTTTATTTTTTTTA-TTAT-TCT-A-TTT
1 TCTTTATTTTTTTTATTTATGTCTGACTTT
15316425 TCTTTA
1 TCTTTA
15316431 AATGAAAATT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
26 9 0.30
27 1 0.03
28 2 0.07
29 3 0.10
30 15 0.50
ACGTcount: A:0.13, C:0.08, G:0.03, T:0.76
Consensus pattern (30 bp):
TCTTTATTTTTTTTATTTATGTCTGACTTT
Found at i:15316512 original size:60 final size:60
Alignment explanation
Indices: 15316446--15317022 Score: 748
Period size: 60 Copynumber: 9.8 Consensus size: 60
15316436 AAATTAAAAC
* * **
15316446 TTTCAAAAAAAAATATTTTTAAGGAAAATTTGAAAATATCAATTTTCCTTATAAAT-AAAT
1 TTTC-AAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
* * *
15316506 TTTC--AAAAAGTGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAG
1 TTTCAAAAAAAAT-ATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
* *
15316565 TTTCAAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
1 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
*
15316625 TTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
1 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
* *
15316685 TTTGAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAAT
1 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
** *** * *
15316744 TTTTGAAAAATGGATTTTTGAGGAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAAT
1 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
* *
15316804 TTTCAAAAAAAA-ATTTTTAAGGAAAAGTTGAAAATATCAA-TTTCCTTAGAAAT-AAAT
1 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
*** * *
15316861 TTTC-AAAAAGGGA-TTTTAAGGAAAAGTTGAAAGTATCAATTTCCCTTGGAAATCAAAG
1 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
* * *
15316919 TTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTT-AAACAT-AAAT
1 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAA-ATCAAAT
** *
15316978 TTTC--AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAGTTTTCC
1 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCC
15317023 CTACACAAAA
Statistics
Matches: 457, Mismatches: 49, Indels: 25
0.86 0.09 0.05
Matches are distributed among these distances:
56 30 0.07
57 64 0.14
58 56 0.12
59 98 0.21
60 203 0.44
61 6 0.01
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (60 bp):
TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
Found at i:15321612 original size:81 final size:82
Alignment explanation
Indices: 15321494--15321830 Score: 493
Period size: 81 Copynumber: 4.1 Consensus size: 82
15321484 ATGATTGTCA
*
15321494 AGGAGCAATTTACTTTTCAAAGTTCCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG
1 AGGAGCAATTTACTTTTCAAAG-T-CGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAG
*
15321557 TCGTGGTACCTC-GTTTAG
64 TCGTGGTGCCTCTGTTTAG
*
15321575 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCC-CTGTTTAGAGGAGCAATTTACTTTTCAAAGT
1 AGGAGCAATTTACTTT-TCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGT
*
15321639 CGTGGTGCCTCTGCTTAG
65 CGTGGTGCCTCTGTTTAG
*
15321657 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTTCAAAGT
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTAC-TTTTCAAAGT
15321722 CGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAG
* *
15321740 AGGAGCAATTTACTTTTCCAAAGTTGTGGTGCCTCTATTTAGAGGAGCAATTTAGGTTTCTCAAA
1 AGGAGCAATTTACTTTT-CAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTA-CTTT-TCAAA
* *
15321805 GTCGTTGAGCCTCTGTTTAG
63 GTCGTGGTGCCTCTGTTTAG
*
15321825 AAGAGC
1 AGGAGC
15321831 TTTGGTAAAA
Statistics
Matches: 236, Mismatches: 11, Indels: 14
0.90 0.04 0.05
Matches are distributed among these distances:
80 3 0.01
81 74 0.31
82 50 0.21
83 43 0.18
84 38 0.16
85 28 0.12
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (82 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTATTTAGAGGAGCAATTTACTTTTCAAAGTC
GTGGTGCCTCTGTTTAG
Found at i:15321728 original size:42 final size:42
Alignment explanation
Indices: 15321494--15321830 Score: 483
Period size: 41 Copynumber: 8.1 Consensus size: 42
15321484 ATGATTGTCA
15321494 AGGAGCAATTTAC-TTTTCAAAGTTCCGT--TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAG-T-CGTGGTGCCTCTGTTTAG
*
15321535 AGGAGCAATTTAC-TTTTCAAAGTCGTGGTACCTC-GTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
15321575 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCC-CTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
15321616 AGGAGCAATTTAC-TTTTCAAAGTCGTGGTGCCTCTGCTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
15321657 AGGAGCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
15321698 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * *
15321740 AGGAGCAATTTACTTTTCCAAAGTTGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
15321782 AGGAGCAATTTAGGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
*
15321825 AAGAGC
1 AGGAGC
15321831 TTTGGTAAAA
Statistics
Matches: 269, Mismatches: 19, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
39 3 0.01
40 39 0.14
41 120 0.45
42 79 0.29
43 28 0.10
ACGTcount: A:0.23, C:0.18, G:0.23, T:0.36
Consensus pattern (42 bp):
AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:15321855 original size:12 final size:12
Alignment explanation
Indices: 15321838--15321868 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
15321828 AGCTTTGGTA
15321838 AAAAAAAAAAAC
1 AAAAAAAAAAAC
15321850 AAAAAAAAAAAC
1 AAAAAAAAAAAC
15321862 AAAAAAA
1 AAAAAAA
15321869 TGACAATGTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.94, C:0.06, G:0.00, T:0.00
Consensus pattern (12 bp):
AAAAAAAAAAAC
Found at i:15322157 original size:3 final size:3
Alignment explanation
Indices: 15322149--15322202 Score: 53
Period size: 3 Copynumber: 18.7 Consensus size: 3
15322139 AGTTATATAT
*
15322149 TTA TTA TTA -TA TTA TAA TTTA TTTA TTA TTA TTA TTA TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA
15322194 -TA TT- TTA TT
1 TTA TTA TTA TT
15322203 TATTTTTGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
2 8 0.18
3 30 0.68
4 6 0.14
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:15322171 original size:22 final size:23
Alignment explanation
Indices: 15322146--15322191 Score: 76
Period size: 22 Copynumber: 2.0 Consensus size: 23
15322136 TATAGTTATA
15322146 TATTTATTATTA-TATTATAATT
1 TATTTATTATTATTATTATAATT
*
15322168 TATTTATTATTATTATTATTATT
1 TATTTATTATTATTATTATAATT
15322191 T
1 T
15322192 TATATTTTAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 12 0.55
23 10 0.45
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (23 bp):
TATTTATTATTATTATTATAATT
Found at i:15322252 original size:28 final size:27
Alignment explanation
Indices: 15322214--15322281 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 27
15322204 ATTTTTGTAT
*
15322214 TTTTATTTATCTAATTATATATCTGTTA
1 TTTTATTTATCT-ATAATATATCTGTTA
* *
15322242 TTTTATTTATCCTATAATATATCTTTTT
1 TTTTATTTAT-CTATAATATATCTGTTA
15322270 TTTTATTTATCT
1 TTTTATTTATCT
15322282 GTTCTAATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
27 2 0.06
28 32 0.89
29 2 0.06
ACGTcount: A:0.25, C:0.09, G:0.01, T:0.65
Consensus pattern (27 bp):
TTTTATTTATCTATAATATATCTGTTA
Found at i:15323143 original size:12 final size:11
Alignment explanation
Indices: 15323126--15323261 Score: 76
Period size: 12 Copynumber: 11.2 Consensus size: 11
15323116 CCGCTCCAAG
15323126 TTTTTTTTTTCA
1 TTTTTTTTTT-A
15323138 TTTTTTTGTTTA
1 TTTTTTT-TTTA
15323150 TTTGTTTTTTTA
1 TTT-TTTTTTTA
*
15323162 TTTTTTATTTAGA
1 TTTTTT-TTT-TA
15323175 TTATTTTTATTTAA
1 TT-TTTTT-TTT-A
* * *
15323189 TATTCTTTTCA
1 TTTTTTTTTTA
*
15323200 TCTTTATTTTTTT
1 T-TTT-TTTTTTA
*
15323213 TTTTTTACTTTTC
1 TTTTTT--TTTTA
15323226 TTTATTTTTTTA
1 TTT-TTTTTTTA
*
15323238 -TTTTTATTTA
1 TTTTTTTTTTA
15323248 TTTTTTTTATTA
1 TTTTTTTT-TTA
15323260 TT
1 TT
15323262 CTATTTTCTT
Statistics
Matches: 97, Mismatches: 13, Indels: 28
0.70 0.09 0.20
Matches are distributed among these distances:
10 7 0.07
11 15 0.15
12 37 0.38
13 27 0.28
14 11 0.11
ACGTcount: A:0.15, C:0.04, G:0.02, T:0.79
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:15323229 original size:10 final size:9
Alignment explanation
Indices: 15323206--15323258 Score: 65
Period size: 10 Copynumber: 5.9 Consensus size: 9
15323196 TTCATCTTTA
15323206 TTTTT-TTT
1 TTTTTATTT
15323214 TTTTTACTTT
1 TTTTTA-TTT
*
15323224 TCTTTA-TT
1 TTTTTATTT
15323232 TTTTTATTT
1 TTTTTATTT
15323241 TTATTTATTT
1 TT-TTTATTT
15323251 TTTTTATT
1 TTTTTATT
15323259 ATTCTATTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
8 12 0.31
9 10 0.26
10 17 0.44
ACGTcount: A:0.11, C:0.04, G:0.00, T:0.85
Consensus pattern (9 bp):
TTTTTATTT
Found at i:15323233 original size:18 final size:18
Alignment explanation
Indices: 15323212--15323254 Score: 68
Period size: 18 Copynumber: 2.4 Consensus size: 18
15323202 TTTATTTTTT
*
15323212 TTTTTTTACTTTTCTTTA
1 TTTTTTTACTTTTATTTA
*
15323230 TTTTTTTATTTTTATTTA
1 TTTTTTTACTTTTATTTA
15323248 TTTTTTT
1 TTTTTTT
15323255 TATTATTCTA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 23 1.00
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.84
Consensus pattern (18 bp):
TTTTTTTACTTTTATTTA
Found at i:15323251 original size:27 final size:27
Alignment explanation
Indices: 15323206--15323273 Score: 77
Period size: 27 Copynumber: 2.6 Consensus size: 27
15323196 TTCATCTTTA
15323206 TTTTT-TTTTTTTTACTTTTCTTTATT
1 TTTTTATTTTTTTTACTTTTCTTTATT
*
15323232 TTTTTATTTTTATTTA-TTTTTTTTATT
1 TTTTTATTTTT-TTTACTTTTCTTTATT
* * *
15323259 ATTCTATTTTCTTTA
1 TTTTTATTTTTTTTA
15323274 AATGAAAATC
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
26 9 0.25
27 23 0.64
28 4 0.11
ACGTcount: A:0.13, C:0.06, G:0.00, T:0.81
Consensus pattern (27 bp):
TTTTTATTTTTTTTACTTTTCTTTATT
Found at i:15323266 original size:17 final size:16
Alignment explanation
Indices: 15323202--15323273 Score: 57
Period size: 14 Copynumber: 4.8 Consensus size: 16
15323192 TCTTTTCATC
15323202 TTTATTTTTTTT-TT-
1 TTTATTTTTTTTATTA
* *
15323216 TTTA-CTTTTCT-TTA
1 TTTATTTTTTTTATTA
*
15323230 TTT-TTTTATTT-TTA
1 TTTATTTTTTTTATTA
15323244 TTTATTTTTTTTATTA
1 TTTATTTTTTTTATTA
*
15323260 TTCTATTTTCTTTA
1 TT-TATTTTTTTTA
15323274 AATGAAAATC
Statistics
Matches: 46, Mismatches: 7, Indels: 7
0.77 0.12 0.12
Matches are distributed among these distances:
13 7 0.15
14 17 0.37
15 7 0.15
16 5 0.11
17 10 0.22
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTATTTTTTTTATTA
Found at i:15323353 original size:60 final size:60
Alignment explanation
Indices: 15323279--15323749 Score: 634
Period size: 60 Copynumber: 7.9 Consensus size: 60
15323269 CTTTAAATGA
* * * *
15323279 AAATCAAAACTTTCAAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAG
1 AAATC-AAATTTTC-AAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
*** *
15323341 AAAT-AAATTTTC-AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
*
15323399 AAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
15323459 AAATCAAATTTTCAAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGG
* * * *
15323519 AAATCAAATTTTCAAAAAATATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
***
15323579 AAAT-AAATTTTC-AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
* * * * * **
15323637 AAATCAAAGTTTAAAAAAAAATATTTTTGAGGAAAAGGTGAAAATACCAATTTTCCTTAA
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
* *
15323697 AAAT-AAATTTTC--AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCATTTTTCC
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
15323750 CTACACAAAA
Statistics
Matches: 363, Mismatches: 40, Indels: 17
0.86 0.10 0.04
Matches are distributed among these distances:
57 36 0.10
58 87 0.24
59 28 0.08
60 207 0.57
61 1 0.00
62 4 0.01
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.34
Consensus pattern (60 bp):
AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
Found at i:15323408 original size:32 final size:32
Alignment explanation
Indices: 15323372--15323466 Score: 76
Period size: 29 Copynumber: 3.1 Consensus size: 32
15323362 TTTTTGAGGA
15323372 AAAGTTGAAAGTATCAATTTTCTTTGGAAATC
1 AAAGTTGAAAGTATCAATTTTCTTTGGAAATC
* ** * *
15323404 AAAGTTTCAAA--AAAAATATT-TTT-GAGGA--
1 AAAG-TTGAAAGTATCAATTTTCTTTGGA-AATC
*
15323432 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
1 AAAGTTGAAAGTATCAATTTTCTTTGGAAATC
15323464 AAA
1 AAA
15323467 TTTTCAAAAA
Statistics
Matches: 44, Mismatches: 11, Indels: 16
0.62 0.15 0.23
Matches are distributed among these distances:
27 5 0.11
28 4 0.09
29 8 0.18
30 7 0.16
31 8 0.18
32 7 0.16
33 5 0.11
ACGTcount: A:0.43, C:0.08, G:0.15, T:0.34
Consensus pattern (32 bp):
AAAGTTGAAAGTATCAATTTTCTTTGGAAATC
Found at i:15323426 original size:118 final size:117
Alignment explanation
Indices: 15323279--15323749 Score: 708
Period size: 118 Copynumber: 4.0 Consensus size: 117
15323269 CTTTAAATGA
*
15323279 AAATCAAAACTTTCAAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAA
1 AAATC-AAAGTTTC-AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAA
* *
15323344 TAAATTTTCAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCTTTGG
64 TAAATTTTCAAAAA-AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
* * *
15323399 AAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATC
1 AAATCAAAGTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-
* *
15323464 AAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTTGG
65 AAATTTTCAAAAAAGAT-TTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGG
* *
15323519 AAATCAAATTTTCAAAAAATATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATA
1 AAATCAAAGTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATA
*
15323584 AATTTTCAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
66 AATTTTCAAAAA-AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
* * * * *
15323637 AAATCAAAGTTTAAAAAAAAATATTTTTGAGGAAAAGGTGAAAATACCAATTTTCCTTAAAAATA
1 AAATCAAAGTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATA
* * *
15323702 AATTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCATTTTTCC
66 AATTTTCAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
15323750 CTACACAAAA
Statistics
Matches: 320, Mismatches: 27, Indels: 11
0.89 0.08 0.03
Matches are distributed among these distances:
117 32 0.10
118 150 0.47
119 43 0.13
120 95 0.30
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.34
Consensus pattern (117 bp):
AAATCAAAGTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATA
AATTTTCAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
Found at i:15324784 original size:26 final size:26
Alignment explanation
Indices: 15324732--15324784 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15324722 CCAGTCCGAT
* * *
15324732 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTAGGAATGAACTCCACATG
*
15324758 CTTAGACTAGGAATGAACTCCGCATG
1 CTTAGACTAGGAATGAACTCCACATG
15324784 C
1 C
15324785 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCACATG
Found at i:15325657 original size:26 final size:26
Alignment explanation
Indices: 15325628--15325680 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15325618 CCAATCTGAT
*
15325628 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACGAGGAATGAACTCTGTATG
*
15325654 CTTAGACGGGGAATGAACTCTGTATG
1 CTTAGACGAGGAATGAACTCTGTATG
15325680 C
1 C
15325681 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACGAGGAATGAACTCTGTATG
Found at i:15326366 original size:898 final size:891
Alignment explanation
Indices: 15324145--15329368 Score: 6406
Period size: 896 Copynumber: 5.8 Consensus size: 891
15324135 ACGTTATGAC
*
15324145 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * **
15324210 CCTTGAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
* **
15324275 ACTTTTTACGATTTAGGATTTTTTAAAATTGTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAG
131 ACTTTTTACGGTTCGGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
15324339 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAAT
195 ACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
** * * ** * *
15324404 ATTTTGTGACCAACTGAAAAAATTATCCATATTTCAGACACTTTAATGGCCACTA-GCAGCAAAC
259 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTAC-AGGCAGCAAAC
*
15324468 CAGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
323 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
15324533 CAATATAAGGGCCAAGTACCAGCACCCATTGCATATCATGTGCGCACACCCCCCCGGCCCCCCCG
388 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCGG-CCCCCCG
* * * *
15324598 ATCGCCTGAACCCCGATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGTCG
450 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
* * * * * *
15324663 AAGAAAAATGCGACACCAGCACATGCCCAAGCCTAGCATGTGCAGGCGCAACCCTTGGTCCAGTC
515 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTC
* * * *
15324728 CGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTAGGAATGAACTCCGCATGCCTAAGTCA
580 TGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * * * * *
15324793 ACCCACGAAATGAGCGTACAGGCGCTCAGCCAGCCAGAGGGTCAGGATGCGCAAGCCGGGGATCG
645 ACCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTG
* * *
15324858 G-CAGGGTCCCCCTC--TGCG-T-G--CT---GCCGCAACCCTCGATCCAGTCTGATCTTAGACT
710 GTC-GGGTCCCCCTCTGTGTGTTCGATCTACGGCCGCAACCCTC-ATCCGGTCTAATCTTAGACT
* * * * *
15324913 AGGAATGAACTACGTATGCCTAACCCAATCGACAAAATGAGCGAGCTGACGGGTGGACGGGCGGG
773 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCG-G--G-C--G-GG-CGGGCGGG
*
15324978 CACTACGCTGGCCAGAGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
830 CACTACGC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
15325041 AGGCACATCTTCATATTTCTGCAAGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
15325106 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
* * *
15325171 ACTTTTTGA-GGTTCGGGATTTTTTAAAATTTCTTCGGAAGGATTTTTGGCCCCAAACTTGGCAG
131 ACTTTTT-ACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
15325235 ACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAACTTCAACTAAAAACTCGAAGTGTGCAAG
195 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAACTCAAAGTGTACAAG
* * * *
15325300 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAATGGCTACTGGCAGCAAACA
259 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAACC
* * * *
15325365 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGACTCCTTGAGGTTTGATGAGGGATAGGGGGCC
324 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
15325430 AATATAAGGGACAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCTCGA
389 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCC-CGGCCCCC-CGA
* * ** * * * *
15325495 TCGTCGAAACCCCAATACTACCGGTCAGGTTCTCCAGCGATGCTCTGGCAATGGTGCCCCGACGA
451 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGA
* * * *
15325560 AGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAATCT
516 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCT
* * *
15325625 GATCTTAGACTAGGAATGAACTCTGTATGCTTAGACGGGGAATGAACTCTGTATGCCTAAGTCAA
581 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * * *
15325690 CGCACGAAACGAGCGTGCGGGCACTCAACTGGCCAGGGGGGCAGGATGCACAAGTCGGGGATTGG
646 CCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGG
15325755 TCGGGTCCCCCTCTGTGTGTTACTGATCCTACGGCCGCAACCCTCATACCGGTCTAATCTTAGAC
711 TCGGGTCCCCCTCTGTGTGTT-C-GAT-CTACGGCCGCAACCCTCAT-CCGGTCTAATCTTAGAC
* *
15325820 TGGGAATGAACTCCGTATGCCTAAGCCAACCAACGAAATGAGCGGGCGGGCGGGTGGGCACTACG
772 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACG
* * * * * * *
15325885 CCGCCAAAGAGACGGGCTACGTAAGCTGTGGAACGATAGGGTGGTAGGTGGGTTT
837 CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
15325940 AGGCACATCTTTATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
15326005 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
** * *
15326070 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAG-TTTAGCCCCAAACTTGGTAGA
131 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
15326134 TGTGATCCTTGTACTTTTT-TTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
196 CGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCAAAGTGTACAAG
15326198 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAACC
259 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAACC
15326263 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
324 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
15326328 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAC-CCCCCGGCCCCCCCGATA
389 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGG-CCCCCCGATC
* * * *
15326392 GTCGGAACCCGAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAACGAAG
453 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* * * * *
15326457 AAAAATGTGGTACCAACACATGCCCGAGCCCAGCATGTGCTATTGCAACCCT---T---G---G-
518 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCTGA
*
15326512 TC-----C---G-AT----T-TG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACC
583 TCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * * *
15326561 CACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATC
648 CACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTC
* * * * * * * *
15326626 GGGTCACCCTCTGCGTGCTACCGATCTAGCTGCTGCAACCCTCAGTTCGGTCTGATCTTAGATTG
713 GGGTCCCCCTCTGTGTG-T-TCGATCTA-CGGCCGCAACCCTCA-TCCGGTCTAATCTTAGACTG
* * * * *
15326691 GGAATGAACTCAGTATGCCTAAGCCAACAGACGAAACGTGCGGGCGAAGGGGCGGGTGGGCACTA
774 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGC----GGGCGGGCGGGCACTA
15326756 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
835 CG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
15326814 AGGCACATCTTCATATATCTGCATGCCAATGCCATTTTTATGTCTTGTAAATTCATATAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* ** * *
15326879 CCTTAAGCCTTGACGTGAAAATTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
** * * *
15326944 ACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGCCCCCAAACTTGGTAGA
131 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
15327009 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAAATCAAAGTGTACAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTAAAAACTCAAAGTGTACAAGA
* * * *
15327074 TTTTGTGACCATTTTAAAAAGGTGTCCCAATTTCA-AACACTTTAATGGCTACTGGCAGCAAACC
260 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAA-ACTTTAATGGCTACAGGCAGCAAACC
* ** *
15327138 TGTAAAATCTCAAATGCTCATTAAGGGGCCGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
324 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
15327203 AATATAAGGGCCAAGTACCAGCACCCATCGCACATAATGTGAGCACACCCCCGACCCCCTCGATC
389 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCC-CGATC
* **
15327268 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCGGTGAAG
453 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
* * * *
15327333 AAAAATGCGTCATCAACACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTGGGTCTGGTTCGA
518 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCC----TC--G---G-
*
15327398 TCTTCGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
573 TC--C-A----G--T---CT---GAT-CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
* *
15327463 ATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACACATGAAACGAGCG
622 ATGAACTCCGTATGC-----------CT-AA----G--T--C-AA--C--C-CACGAAACGAGCG
* * * ** * * * * * *
15327528 TGTGGGCATTCAGCCGGCTAGAGGGGTGGGATGTGCAAGCCAGGAATCGGTCGGGTCCTTCTCTA
661 TGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGGTCC--CCCTC
* * ** * * ** **
15327593 TTTGCTGTT-GATCTTGCTACCACAACCCTCGGTCTAGTCCGATCTTAGACTGGGAATGAACTCC
724 TGTG-TGTTCGATC-TACGGCCGCAACCCTC-ATCCGGTCTAATCTTAGACTGGGAATGAACTCC
* * * * * * * * *
15327657 GTATGCCTAAGCCAGCCGATGAAACGAGCGGGTGGGCGGGCGGACAATACGTTGGCTAGAGAGAA
786 GTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACG-CGGCCAGAGAGAC
* *
15327722 TGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTT
850 GGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
15327764 ATGCACATCTTCATATTTCTACTTGCCAATGCCA-TTTTATGGCTTGTAAATTCATACAATGGT-
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
15327827 CCTATGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
66 CCT-TAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGA
* * * * *
15327892 AACATTTTATGGTTTGGGATTTTTTAAAATTTTTTCAGCAA-GAGTTTTAGCCCCAAACTTGGTA
130 AACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
15327956 GACGTCATCCTTGTAGTTTTGTTTGCATGCACAAAAAAATTCAGCTAAAAACTCAAAATGTACAA
194 GACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCAAAGTGTACAA
* * * *
15328021 GATTTTGTGACCATTTGAAAAAACTATCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
258 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAAC
15328086 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
323 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
15328151 CACTATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCGGCCCCCCGATC
388 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCGATC
* * ** * * * *
15328216 GTCGGAACCCCAATGCCGTCC-GTCAGGTTTTCCGACGATGCTCCGGTGATAGTACCCCGGCAAA
453 GTCGGAACCCCAATGCCG-CCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAA
* * * * *
15328280 GAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTTCTG-CTGCAACCCTCTGTCCATTTT
517 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCAGTCT
* *
15328344 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATAAACTTCGTATGCCTAAGTCAA
581 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
15328409 CCCACGAAACGAGCGTGCGGGCGCTCCGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGATTGG
646 CCCACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGG
* * ** ** * *
15328474 TCGGGTCCCCCTCTGTGAGCTGTCGATCTTGCTACCATAACCCTCAGTTCGGTCCAATCTTAGAC
711 TCGGGTCCCCCTCTGTGTG-T-TCGATC-TACGGCCGCAACCCTCA-TCCGGTCTAATCTTAGAC
* * * *
15328539 TGGGAAAGAACTTCGTATGCCTAAGCCAACCGACCAAATGAGCGGGCGGGCGGGCGGGCACTATG
772 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACG
* * *
15328604 CCAGCCAGAGAGACGGGATACGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTT
837 -CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * * *
15328660 AGGCATATCTTCATATTTCTGCCTCCCAATGCCATTTTTATGGCTCGTAAATTCATTCAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
15328725 CCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
* * * *
15328790 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGTCACAAACTTGGTAGG
131 ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* *
15328855 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAATATTCAGCAAAAAACTCAAAGTGTACAAGA
196 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-ATTCAGCTAAAAACTCAAAGTGTACAAGA
*
15328920 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAACTT
260 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAACCT
* * *
15328985 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACAA
325 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * **
15329050 ATATAAGGGCCAAATACCAGCACCCATCTCACATCATGTGCGCACACCCCTCGAACCCCCGATCG
390 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CGGCCCCCCGATCG
* * * * *
15329115 TCGGAACCCCAATGCCGCCGATCAGGTTCTTCGACGATGCTCCGGCGATGGTGCCCCGAGGAAGA
454 TCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * * * *
15329180 AAAATGCGACACCAGCACATGCCCGAGCCCAGCATGTGCTATCACAACCGTTGGCCCAGTCTGAT
519 AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCTGAT
*
15329245 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
584 CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* *** *
15329310 ACGAAACGAGCGTGCGGGCATTCAGCCGGCCAGAGGGATGGGATGCGCAAGCCGTGGAT
649 ACGAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
15329369 CGATAGGGTG
Statistics
Matches: 3750, Mismatches: 440, Indels: 274
0.84 0.10 0.06
Matches are distributed among these distances:
868 3 0.00
869 175 0.05
870 5 0.00
871 2 0.00
872 1 0.00
873 18 0.00
874 211 0.06
875 241 0.06
876 116 0.03
877 1 0.00
880 2 0.00
885 2 0.00
886 1 0.00
889 1 0.00
892 1 0.00
893 1 0.00
894 7 0.00
895 126 0.03
896 861 0.23
897 363 0.10
898 475 0.13
899 220 0.06
900 15 0.00
901 4 0.00
902 3 0.00
904 2 0.00
905 3 0.00
906 1 0.00
907 3 0.00
908 65 0.02
910 2 0.00
911 2 0.00
912 1 0.00
917 1 0.00
920 1 0.00
921 2 0.00
922 51 0.01
923 2 0.00
925 1 0.00
926 3 0.00
927 2 0.00
928 27 0.01
929 1 0.00
935 1 0.00
936 1 0.00
938 2 0.00
939 2 0.00
940 2 0.00
944 3 0.00
946 1 0.00
947 1 0.00
948 105 0.03
949 365 0.10
950 104 0.03
951 1 0.00
953 1 0.00
954 127 0.03
955 1 0.00
956 6 0.00
957 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (891 bp):
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
ACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGAT
TTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAACCTG
TAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCGGCCCCCCGATCGTC
GGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAGAAA
AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCTGATCT
TAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCAC
GAAACGAGCGTGCGGGCACTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATTGGTCGGG
TCCCCCTCTGTGTGTTCGATCTACGGCCGCAACCCTCATCCGGTCTAATCTTAGACTGGGAATGA
ACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGGCACTACGCGGCCAGAG
AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
Found at i:15327439 original size:26 final size:26
Alignment explanation
Indices: 15327403--15327503 Score: 175
Period size: 26 Copynumber: 3.9 Consensus size: 26
15327393 TTCGATCTTC
*
15327403 GACTGGGAATGAACTCCATATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
*
15327429 GACTGGGAATGAACTCTGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
15327455 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
*
15327481 GATTGGGAATGAACTCCGTATGC
1 GACTGGGAATGAACTCCGTATGC
15327504 CTAAGTCAAC
Statistics
Matches: 71, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 71 1.00
ACGTcount: A:0.28, C:0.18, G:0.27, T:0.28
Consensus pattern (26 bp):
GACTGGGAATGAACTCCGTATGCTTA
Found at i:15328383 original size:26 final size:26
Alignment explanation
Indices: 15328347--15328399 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15328337 CCATTTTGAT
*
15328347 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATAAACTTC-GTATG
15328373 CTTAGACTGGGAATAAACTTCGTATG
1 CTTAGACTGGGAATAAACTTCGTATG
15328399 C
1 C
15328400 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 23 0.92
27 2 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTTCGTATG
Done.