Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 80 of 195
Found at i:15329281 original size:26 final size:26
Alignment explanation
Indices: 15329245--15329297 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15329235 CCAGTCTGAT
15329245 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15329271 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15329297 C
1 C
15329298 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15330010 original size:26 final size:26
Alignment explanation
Indices: 15329981--15330033 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15329971 CCGGTCCGAT
*
15329981 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15330007 CTTAGACTGGGAATAAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCGTATG
15330033 C
1 C
15330034 CCAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCGTATG
Found at i:15332374 original size:14 final size:14
Alignment explanation
Indices: 15332355--15332381 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15332345 GATGCTCCGA
15332355 CGATGGTGCCCCGG
1 CGATGGTGCCCCGG
15332369 CGATGGTGCCCCG
1 CGATGGTGCCCCG
15332382 ACGAAGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.37, G:0.41, T:0.15
Consensus pattern (14 bp):
CGATGGTGCCCCGG
Found at i:15332483 original size:26 final size:26
Alignment explanation
Indices: 15332454--15332506 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15332444 CTGATCCAAT
15332454 CTTAGACTGGGAATGAAATCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
*
15332480 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAAATCCGTATG
15332506 C
1 C
15332507 CTGAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAAATCCGTATG
Found at i:15333771 original size:26 final size:26
Alignment explanation
Indices: 15333731--15333780 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15333721 CCGGTCTGAT
15333731 CTTAGACTGGAAATGAACTCCATACG
1 CTTAGACTGGAAATGAACTCCATACG
*
15333757 CTTAGACTGGGAATGAACTCCATA
1 CTTAGACTGGAAATGAACTCCATA
15333781 TGCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.34, C:0.22, G:0.20, T:0.24
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATACG
Found at i:15335986 original size:889 final size:894
Alignment explanation
Indices: 15334720--15338966 Score: 5342
Period size: 874 Copynumber: 4.8 Consensus size: 894
15334710 AAAAGATTCA
* ** *
15334720 CAAGTCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGTATGCCAAAG
1 CAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
15334785 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
66 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * *
15334850 GACGACTCGTTCTCTATTTTTCAGGATTTTTG-AATTTTTTGCGGTTC-AGGATTTTTTAAAATT
131 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATT
*
15334913 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGCCGTGATCCTTGTATTTTTGTTGGCATGCAC
195 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* *
15334978 -CAAAAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
260 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
*
15335042 TTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
325 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
* *
15335107 TGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACAAGCACCCATCAC
390 TGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCAC
*
15335172 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCAAATGTCGTCGATCAGGTTC
455 ACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTCGATCAGGTTC
** * *
15335237 TCCGATGATGCTTTGACGATGGTGCCCCGACGAAGAAAAATGCGACACCAGCACATGCCTGAGCC
520 TCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCC
* * ** * * *
15335302 CAGCATGTGCTGCCGTAACCCTCGGTTCGATTTGATCTTTGAATGGGAATGAACTCCGTATGGTT
585 CAGCATGTGCTGTCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
15335367 AGAATGGCAATGAACTCTGTATGCCTAAGTCAACCCATGAAATGAGCGTGCGGGCGCTCAGTCGG
650 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
** * * * * ***
15335432 CCAGAAGGATGAGATGCGCAAGTCGAGGATCGATCGAGTCCCCCTCTGCGTGCTGTTGATCCTGC
715 CCAGAAGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGC
* *
15335497 TGCCACAACCCTC-GTCTGATCT-ACTCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
780 TACCGCAACCCTCGGTCTGATCTGA-TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
15335560 GATGAAACGAG-CGGCGAGCGGGCGGG-CG-GGCCAGAGAGACGGGATGCG
844 GATGAAACGAGACGGCGAGCGGGCGGGACGTGGCCAGAGAGACGGGATGCG
* * *
15335608 CAAGCCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATG
1 CAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
15335673 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
66 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * ** * *
15335738 GACGCCTCGTTTTCTATTTTTCATGATTTTTGAAAAATTTCACAGTTCGAGATTTTTTAAAATTT
131 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* *
15335803 TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTATTTTT-TTGGCATGCACA
196 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
*
15335867 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGAGACCATTTGAAAAAAGTGTCCCCAT
261 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* *
15335932 TTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTGT
326 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* * * * *
15335997 GAGTTCTTGAGTTTTGAAGAGGGATAAGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
391 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
15336062 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCG-CTGGAACCCCAATGTCG-C---C-GG---
456 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGTCGTCGATCAGGTTC
* * *
15336118 T-C-ATG-TTCTCCGATGATGGTGCCCCGACGAAGAAAAATACTG-CACCAGCACATGCCTGAGC
520 TCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAC-GACACCAGCACATGCCCGAGC
* * * * * **
15336179 GCAACATGTGCTGTCGCAACCCTCGGTCTGGCT-CAATCTTAGACTGCAAATGAACTCCGTATGC
584 CCAGCATGTGCTGTCGCAACCCTCGGT-TCGATCCGATCTTAGACTGGGAATGAACTCCGTATGC
* * * *
15336243 TTAGATTGGGAATGAACTATGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCGCTCAACC
648 TTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC
* * *
15336308 GACCAGAAGGGCGAGATGCGTAAGCCGGGGTTCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCT
713 GGCCAGAAGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCT
* * * *
15336373 ACTACTGTAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCTGTATGCCTAAG-----
778 GCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC
* * ** ***
15336433 CG--G--GCGGGTGGGC-AGACGGGCACTACGTCGGCCAGAGAGACGGGATGCG
843 CGATGAAACGAGACGGCGAG-CGGGCGGGACGT-GGCCAGAGAGACGGGATGCG
* *
15336482 CAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGCCAATG
1 CAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
*
15336547 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAATTTCATGGCAA
66 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * * * *
15336612 GACGACTTGTTTTATATTTTTGACGATTTTCGAAACTTTTTACTGTTTGGGATTTTTTAAAATTT
131 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * * *
15336677 TTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTTCTTTTTGTTGG-ATGCATA
196 TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
* *
15336741 AAAAAATTCCGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTTTCCCCAT
261 AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
* * * * * *
15336806 TTAAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCACTATGAGGGGGCGT
326 TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
* ** * **
15336871 GAGTTCTCGAGGTTTGATGGGGGATAGGAAGCCAATAGAAGGGCCAAGTACTGGCACCCATCACA
391 GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
* *
15336936 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCATCAGAACCCCAATGTCGTCTG-TCAGGTTC
456 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTC-GATCAGGTTC
* * * *
15337000 TCCGATGATGCTCCGACGATGGTGCCCTGGCGAAGAAAAATACGGCGCCAGCACATGCCCGAGCC
520 TCCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCC
**
15337065 CAGCATGTGCTACCGCAA-CC-C---TCG----G-TC-----C------TG---TCCG-AT-CTT
585 CAGCATGTGCTGTCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTT
* * * * *
15337104 AGACTGGGAATGAACTCCT-TATGCCTAAGTCAACCCACGAAACGAGTGTGCAGGCGATCAACTG
650 AGACTGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCG
** * *
15337168 GCCAG-AGGG-GTAGGATGCATAAGCCGGGGATCGGTCGGGTCCCTCTCCGCGTGCTACCGATCC
714 GCCAGAAGGGCG-A-GATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCC
* * ** * * * *
15337231 TGCTACCGCAACCCTCGGTCCGGTCCAATCTTAGACTAGAAATGAACTTCGTATGCCTAAGCTAA
777 TGCTACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
15337296 TCGATGAAATGA-ACGGGTGGGCGAGCAGGCGGGCACTACGTTTGCCAGAGAAACGGGATGCG
842 CCGATGAAACGAGAC-----GGCGAGCGGGCGGG----ACG-TGGCCAGAGAGACGGGATGCG
* * * *
15337358 CAATTCATGGATCGATAGGGTGGTAGGTGGGTTTAGACACATCTTCATATTTCTGTGTGCCAATG
1 CAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
*
15337423 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAA
66 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
*
15337488 GACGACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTACGGTTCTG-GATTTTTTAAAATT
131 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATT
* * * *
15337552 GTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTACACGTGATCCTTGTATTTTTGCTGGCATGCAC
195 TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
* * * * *
15337617 AAAAAAAATCAGCTAAAAGCTCGAATTGTACAAGAGTTTATGACCATTTGAAAAAAGTGTCCCCA
260 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* *
15337682 TTTCAGACACTTTAATAGCTACTGGCAGCAAACCTGTAAAATCTAAAATGCTCTTTAAGGGGGTG
325 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTG
*
15337747 TGAGTTCTC-ATGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCG
390 TGAGTTCTCGA-GGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCA
* * ** *
15337811 CACATCATGTGCGCACACCCCCCCCGGCCCCTCCGATCATCGGAACCCCAAT-TCCACCGATTAG
454 CACATCATGTGCGCACA--CCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGT-CGTCGATCAG
* * * *
15337875 GTTCCCCGATGATGCTCC-AGCGTTGGTGCCCCGACGATGAAAAATACGACACCAGCACGTGCCC
516 GTTCTCCGATGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCC
* * * *
15337939 GCGCCCAGCATGTGCTGTCGCATCCC-CGGTCCGGTCCGATCTTAGACTGGGAATGAACT-CGTA
580 GAGCCCAGCATGTGCTGTCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTA
* * *
15338002 TGCTTAGACTGGGAATGAACTCCT-TATGACTAAGTTAACCCATGAAACGAGCGTGCGGGCGCTC
645 TGCTTAGACTGGGAATGAACT-CTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTC
* * * * * * *
15338066 AGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCTGTTCCCCCTCTGCGTGTTGCCGA
709 AGCCGGCCAGAAGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGA
* * * *
15338131 TCCTGCTGCCGCAACCCTCAGCTCTG-TCTGATCATAGACTGGGAATTAACTCCGTATGCCTAAG
774 TCCTGCTACCGCAACCCTC-GGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * *
15338195 CCAACTGACGAAACGAGGCGGCGGTGTGCGGGACGGGCCGTGCGGGCGGGCATTACGTCGGCCGG
838 CCAACCGATGAAACGA---------------GAC-GG-CGAGCGGGCGGG----ACGT-GGCCAG
*
15338260 AGAGACGAGATGCG
881 AGAGACGGGATGCG
* **
15338274 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTGCATCTTCATATTTCTGCGTGCCAATG
1 CAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
*
15338339 CCATTTTTCTGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
66 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* * * * *
15338404 GACGGCTCGTTTTTTATTTTTCATGATTTTTGAAACTTTTTACGGTTCGGGATTTTGTAAAATTT
131 GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
* * *
15338469 TTTCGGAAGGAGTTTTGG--CTAAATCCTCGGTAGACGTGATCCTTGTATTTTTCTTGGCATGCA
196 TTTCGGAAGGAGTTTTGGCCCCAAA--CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA
* * * *
15338532 TAAAAGAATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAATAAAGTGTCCCC
259 CAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC
* * *
15338597 ATTTCA-AGCACTTTACTGGTTACTGGCAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGGGGG
324 ATTTCAGA-CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGG
**
15338661 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGTGAATATAAGGGCCAAGTACCAGCACCCATC
388 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * *
15338726 CCACATCATGTGCGCACA-CCCCCGG-CCCCCCGATCG-CTGGAACCCCAATGCCGTTGGTCAGG
453 ACACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTC-GGAACCCCAATGTCGTCGATCAGG
* * *
15338788 TTCTCTGACGATGCTCCGACGATGGTGCCCCTG-CGAAGAAAAATACGGCACCAGCACATGCCCG
517 TTCTCCGATGATGCTCCGACGATGGTGCCCC-GACGAAGAAAAATACGACACCAGCACATGCCCG
* * * * *
15338852 AGCCCAGCATGTGCTATCGTAACCCTCGGTCCGATCTGATCTTAGATTGGGAATGAACTCCGTAT
581 AGCCCAGCATGTGCTGTCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTAT
* *
15338917 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAG
646 GCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG
15338967 AGGGCGGACA
Statistics
Matches: 2906, Mismatches: 337, Indels: 206
0.84 0.10 0.06
Matches are distributed among these distances:
857 1 0.00
858 5 0.00
859 158 0.05
860 3 0.00
861 4 0.00
864 4 0.00
866 1 0.00
868 1 0.00
870 6 0.00
871 8 0.00
872 10 0.00
873 2 0.00
874 476 0.16
875 8 0.00
876 252 0.09
877 195 0.07
878 220 0.08
879 161 0.06
880 5 0.00
881 1 0.00
882 1 0.00
883 4 0.00
884 8 0.00
885 64 0.02
887 1 0.00
888 169 0.06
889 305 0.10
890 1 0.00
893 1 0.00
899 2 0.00
901 2 0.00
902 3 0.00
903 162 0.06
904 7 0.00
905 1 0.00
911 1 0.00
912 100 0.03
913 41 0.01
914 51 0.02
915 6 0.00
916 452 0.16
917 1 0.00
919 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (894 bp):
CAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATG
CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
GACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTT
TTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACA
AAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCAT
TTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGT
GAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACA
CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGTCGTCGATCAGGTTCT
CCGATGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACGACACCAGCACATGCCCGAGCCC
AGCATGTGCTGTCGCAACCCTCGGTTCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
CAGAAGGGCGAGATGCGCAAGCCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT
ACCGCAACCCTCGGTCTGATCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGA
TGAAACGAGACGGCGAGCGGGCGGGACGTGGCCAGAGAGACGGGATGCG
Found at i:15338921 original size:26 final size:26
Alignment explanation
Indices: 15338892--15338944 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15338882 CCGATCTGAT
*
15338892 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15338918 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15338944 C
1 C
15338945 CTAAGCCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15339655 original size:26 final size:26
Alignment explanation
Indices: 15339626--15339676 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15339616 GGTCCGATCC
*
15339626 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTAGGAATGAACTCCGTATGCT
*
15339652 TAGACTAGGAATGAACTTCGTATGC
1 TAGACTAGGAATGAACTCCGTATGC
15339677 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.18, G:0.25, T:0.27
Consensus pattern (26 bp):
TAGACTAGGAATGAACTCCGTATGCT
Found at i:15340567 original size:26 final size:26
Alignment explanation
Indices: 15340531--15340583 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15340521 TCGGTCCGAT
15340531 CTTAGACTGGGAATGAA-TTCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
15340557 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15340583 C
1 C
15340584 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15340803 original size:907 final size:900
Alignment explanation
Indices: 15338918--15348814 Score: 12108
Period size: 907 Copynumber: 11.0 Consensus size: 900
15338908 ACTCCGTATG
* * * * * *
15338918 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGACAGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
* * *
15338983 CAGGCACTACGCCGGCCAGAGAGACGGGATGCCCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
15339048 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
15339113 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
15339178 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
* * * * * * *
15339243 GACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAATAATTCAGCTAAAAAATCGAACTATACAA
326 GAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
15339308 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
15339373 CTGTAAAATCTC-AATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
15339437 CAATATAAGGGCCAAGTACCAGCACACATTGCACATCATGTGCGCACA-----C--CCCCCCGAT
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
* * * **
15339495 CG-CTGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGC-CTGGCGATGGTGCGCTGGTGAA
586 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAA
*
15339557 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCCG
651 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTTCGGTCCG
* *
15339622 ATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAAC
715 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAAC
* * * * * * *
15339687 CCATGAAACGAGCGTGTGGGCGCTCAGTCGGCCGACCAGAGGGGCGGGATGTGCATGTCGGGGTT
780 CCACGAAACGAGCGTGCGGGCGCTCA----GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * * *
15339752 CGACCGAGTCCCTCTCTATGTGCTGTCAATCTTACTACCACAACCCTCAGTCCGATCCGAT
841 CG-CCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCCAAT
* * *
15339813 CTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGTGAGTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
*
15339878 CGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
15339943 TTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGTCTTGTAAACTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
15340008 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTGGTTTTCTATTTTTCACGATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *** * * * * *
15340073 AAACTTTTTGTGATTCCAAATTTTTTAAAATTTTTTCGGAAGGATTATTAGCCCCAAACCTGGTT
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
* * * *
15340138 GAAGTGATCCTTGTATCTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
326 GAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
15340203 GATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCA-AGCACTTTACTGGTTACTGGCAGCAAA
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGGCTACTGGCAGCAAA
* *
15340267 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
15340332 CCAATCTAAAGGCCAAGTACCGGCACCCATCGCACATCACGTGCGCACACCCCTCCGGCCCCCTC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCC-C
* * * **
15340397 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGACGGTGCTCTGGCGATGGTGCCCTGGT
583 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGAC
**
15340461 GAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTTCGGT
648 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTTCGGT
* * *
15340526 CCGATCTTAGACTGGGAATGAATTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGCC
712 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
* * *
15340591 AACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAACCAGAGGGGCGGGATGTGCAAGTCGGG
777 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG----CCAGAGGGGCGGGATGCGCAAGCCGGG
* * * * * **
15340656 GTTCAGCCGGGTCCCCCTCTATGTGATGTCGATCTTACTACCACAACCCTCAGTCCGGTCTGAT
838 GATC-GCCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCCAAT
* * * * * * *
15340720 CTTAAACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATGAGTGAGTGGGCGGGCGAG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
* * * *
15340785 CGGGCACTACGTCGGCCAGAGAGACGAGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15340850 TTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
15340915 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTGGTTTTCTATTTTTCACGATTTTTA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * ** *
15340980 AAACCTTTTGTGATTTC-AAATTTTTTAAAATTTTTTCGGAAAGATTATTGGCCCCAAACTTGGT
261 AAACTTTTTGCG-GTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGT
* * *
15341044 AGAAGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTACA
325 AGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
15341109 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-AT-GCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
15341172 CCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGAGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
15341237 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCTA
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGA
* * * *
15341301 TCGTCGGAACCCTAATCCCGCCGGTCAGGTTCTCCGGCGATGCTCTAGCGATGGTG-CCCGACGA
585 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGA
* * * * *
15341365 AGAAAAATGCAGCACCAGCACATGCCCGAGCCCACCATGTGCTGCCACAACCCTCGGTCTGGTTC
650 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTTC-GGTCC
15341430 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTCAAAATGAACTCTGTATGCTTAGACTGG
714 GATCTTAGACT-GG---G-A------ATG---A-A--C----T---C-C-GTATGCTTAGACTGG
** * *
15341495 GAATGAACGCCGTATGCCTAAGTCAACCCACGAAAC-ATGCGTGCGAGAGCTCAGCCGGCCAGAG
753 GAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGGCCAGAG
* * * * *
15341559 GGGCGGGATGCACAAGCTGGGGATCGACCGGGTCCCCCTCTACGTGCTACCCATCCTGCTACCAC
817 GGGCGGGATGCGCAAGCCGGGGATCG-CCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCAC
* *
15341624 AACCCTCAGTCTGGTCTAAT
881 AACCCTCAGTCCGGTCCAAT
* * * * * *
15341644 CTTAGACTGGGAATGACCTCCGTATGCCGAAGCCAACTGACGAAATGACCGCA-CGGACGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-AGCGGGCGGGCGG
* * * *
15341708 GCGGGCACTACGCCGACAAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGC
65 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
15341773 TTTAGGCACATCTTCATATTTCTGCATGCTAATGCCCTTTTTATGGCTTGTAAATTCATACAACG
130 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
15341838 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** * *
15341903 GAAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGT
260 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGT
* * *
15341968 TGACA-TGATCCTTGTA-TTTTTTTGGGATGCAAAAAAAAATTCAGCTAAAAAC-CTGAAGTGTA
325 AGA-AGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-GAAGTGTA
* * * * *
15342030 CAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCGGAGACTTTAATGGCTACTGGTAGCA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
15342095 AACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTAATGAGGGATAGGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
15342160 GGCCAATATGAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACACCCCCTGGCACCCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCC
* * * *
15342225 AGATCACCGGAACCCCAATGTCGCCGGTCAAG-T-T----C--T-C-C-GGCGATGGTGCCCCGA
582 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGA
* * * * *
15342279 CGAACAAAAATGAGACACCAGCACATGCACGAGCCCAGCATGTGCTGCCGCAA-CCTCGATCTGG
647 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTTC-GG
* * * *
15342343 TCCGATCTTCGATTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGT
711 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
** * *
15342408 CAACCCACGAAATAAGCGTGCCGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGAT
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * ** *
15342473 CGGCCGGGTCCCCTTCTATGTGCTGCCGATCCTACTGCCGCAACCCTAAGTTTGAT-CAAT
841 C-GCCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCCAAT
* * * * * *
15342533 CTTAGACTAGAAATGAACTCTGTATGCCTAAGCCAACCGATGAAA-TA---AGC-GGCTAGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGC-GGGCGG
* * *
15342593 GCAGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGG
65 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
15342658 TTAAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATG
130 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
15342723 ATCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
15342788 GAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTGCGCCCCAAACTTGG
260 GAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTG-GCCCCAAACTTGG
* * *
15342852 TAGACA-TTATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTA
324 TAGA-AGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
15342916 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
388 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * *
15342981 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAAGG
453 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
15343046 GGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACA-----C--CCCCCC
518 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* * * *
15343104 GATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGAC
583 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGAC
* * * * * *
15343169 GAAGAAAAGTGCGACACCAGCACATGCCCGAGCACAGCATGTGCTGTCGCAACCCTCGGTCCGTC
648 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTTCGGTC
** **
15343234 TAATCTTAGACTGGGAATGAACTTTGTATGCTTAGA-TCGGGAATGAAC-TCAGTATGCCTAAGT
713 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTTC-GTATGCCTAAGT
* * * * *
15343297 CAACCCACGAAACGAGCGTGCGAGCGCTTAGCTGGCCAGAGGGGCGTGATGCGCAAGCCAGGGAT
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
*** * * * * *
15343362 CGACCGGGTCCCCCTCTGCATGCTGCCAATCTTGCTACCGCAACCTTGA-TCCGGTCCAAT
841 CG-CCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCCAAT
* * * *
15343422 CTTAGACTGGGAATGATCTCCGTATGCCTAAACCAATCGA-GGAA--A-CGA----GCGGGC---
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
* * *
15343476 C-GGCACTACGCCGGCCAGAGAGACGGGTTGCACAAGCCGTGGATCGATAGAGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
15343540 TTAGGCACGTCTTCATTTTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
15343605 TCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
15343670 AAAATTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGATTTTTGGCCCGAAACATT-GT
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAAC-TTGGT
* * *
15343734 AG-AGAGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACA
325 AGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * **
15343798 AGATTTTGTGACCATTTGAAAAAAGTTTCTCGATTTCAGACACTTTAATGGCTACTGATAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
15343863 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGTG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
15343928 CCAATATAAGGGCCAAGTACCAACACCCATCACACATCATGTGCGCACCCCCCCCGACCCCCCCG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCG
* * *
15343993 ATCGCC-GAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCTGGC-AGTGGTACCCCGAC
584 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGA-TGGTGCCCCGAC
* * * * * * * *
15344056 GAAGAAAAATGCGACCCCAGCACATGCCCAAGCCCAACATCTGCCGCCGTAACCCTCG-TCAAGT
648 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTTC-GGT
*
15344120 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTA-ACTGGGAATGAAC-TCTGTATGCCTAAGT
712 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGT
* * * *
15344183 TAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGA-GGGCGGGATGCGAAAGCC-GGGAT
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * *
15344246 CGATCGGGTCCCCTTCT-TCATGCTACCGATCCTTGCTGCCACAACCCTCGGTCCGGTCCAAT
841 CG-CCGGGTCCCCCTCTAT-GTGCTGCCGATCC-TGCTACCACAACCCTCAGTCCGGTCCAAT
* * * *
15344308 CTTTGA-TAGGGAATGAACTTCATATGCCTAAGCCAACCGACGAAAGGAGCGGGCAAGTGGGCGG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--A----GCGG
* * * * * *
15344372 GTGGGCGGGTGGGCACTATGCCAGCCAGAGAGACTGGATGCGCAAGCCATGGATCGATAGGGTGG
57 GCGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
15344437 TAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGTCAATGCCATTTTTATGGCTTGTAAATTC
122 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
15344502 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
187 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * ** * *
15344567 TC-ATTTTTGAAACTTTTTCCCGTTCGGGATTTTTTCAAATTTTTTCAAAAAAAGTTTTGGCCCC
252 -CGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCC
*
15344631 AAACTTGGTAGATGTGATCCTTGTATTTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
316 AAACTTGGTAGAAGTGATCCTTGTA--TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
15344696 CGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTA
379 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
** *
15344761 CTGATAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
444 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
15344826 AGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTACGCACACCCCC
509 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
**
15344891 CGGCCCCCCCGATCGCCGGAACCAGAATGCCGCCGGTCAGGTTCT-C--CGA--------CGATG
574 CGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATG
** * * * * *
15344945 GTGCCCCGACGAAGAAAAATAAGGCACCAGCACAT-CCTTGAGCCCATCATGTACTGTCGTAACC
638 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC-CGAGCCCAGCATGTGCTGCCGCAACC
* * *
15345009 CTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
702 CTCGTTC-GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGT
* * * * * *
15345074 ATGCCTAA-TTAACGCACGAAATGAGCGTGCGGGCGTTCAGCCGGCCAAAGGGGCGGGATGCGTA
766 ATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCA
* * * * *
15345138 AGCCGGGGATCGGTCGGGTCCCCCTCT-TCATGCTACCGATCCTGCTGCCACAACCTTCAGTCCG
831 AGCCGGGGATC-GCCGGGTCCCCCTCTAT-GTGCTGCCGATCCTGCTACCACAACCCTCAGTCCG
15345202 GTCCAAT
894 GTCCAAT
* * * * * *
15345209 CTTCGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
* * *
15345274 TGGGCACTATGCCGGCCAGAGAGACTGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15345339 TTAGGAACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
15345404 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * ** *
15345469 AAACTTTTTGTGGTTCGGGATTTTTTAAAA-TTTTTCAGAAAGATTTTTGGCCTGAAACTTTGTA
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
* * * * *
15345533 GACGGGATCCTTGCATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAA
326 GAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * **
15345598 GATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGATAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
15345663 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
15345728 CGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCCTGGCCCCCC
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCC-GG-CCCCC
* * * * * * * *
15345793 CGATCGGCGGAACCCCAATGCCGCCGGTCAAGTTCTTCGGTGACGCTCCGACGAAGGTGCCCCGA
582 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGA
* * ** *
15345858 CGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCCGG
647 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTTCGG
* * *
15345923 TCCGATGTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
711 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
* ** ** * *
15345988 CAACCCATGAATTGAATGTGCGGGCGTTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * ** * **
15346053 CAACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGCAACCCTCAGTCTGGTCTGAT
841 C-GCCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCCAAT
* * * * * * * * * ** *
15346114 CTTAGACTAGGAATGAACTTCGTATGCCTAAGCCGATCGGCAAAACAAGCGGGCGAGCGGGATGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
* * * * *
15346179 CAGACACTACGTCGGTC-GAAGTGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
66 CGGGCACTACGCCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
15346243 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
15346308 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTCTATTTTTCATGATTTTC
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** * * * *
15346372 GTAACTTTTTATGGTTC-GGATTTTTTTAAAA-TTTTTCAGAAAGAGTTTTGGCCCAAAACTTTG
260 GAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGG
* * *
15346435 TAGACGTGATCCTTGTA--TTTTTTGGTATGCACAAAAAAATTCACCTAAAAACTCGAAGTGTAC
324 TAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
*
15346498 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
15346563 ACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGT
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* ** *
15346627 GCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCGCGTGCGCACACCCCCCGACCCCACC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CC
* * * * * * * * *
15346692 GATCGCCAGAATCCCAATGTCGTCGGTCAGGTTCTCCGACGATTCTCCGGCGATGGTGCCCTGGC
583 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGAC
* * * * * * *
15346757 GAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATCTACTG-CGTAAACCCTCGATCCAG
648 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG-CAACCCTCG-TTCGG
* * *
15346821 TCTGATCTTAGACTGGGAATGAAGTCTGTATGCTTAGACT-GGAATGAACTTCGTA-GCCTAAGT
711 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
* * * *
15346884 CAACCCACGAAACGGGCGTGCGGGCGCTCAGTCTGCCAAAGGGGCGGGATGCGCAA------G--
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * ** ** **
15346941 C-CCGGGTCCCCCTCTGTATACTATCGATCCTGCT-GGAGCAACCCTCAGTCCGGTCTGAT
841 CGCCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCA-CAACCCTCAGTCCGGTCCAAT
* * * * * * *
15347000 CTTAGACTAGGAATGAGCTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGGACGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
* * * * * * * * *
15347065 CGGGAACTATGCCGGCCAAAGAGACGAGAGGCACAAGGCATGGATCGATAGGGTGGCAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15347130 TTAGGCACCTCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
15347195 ACCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATATTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * *
15347260 AAACTTTTTGC-GTTCGGGATTTTTTAAATTTTTTTCAGAAAAAGTTTTGGTCCCAAACTTGGTA
261 AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
* * * *
15347324 CACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAGTTCAACCT-AAAACTCGAAGTGTACA
326 GAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCGAAGTGTACA
* *
15347388 AGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
15347453 CCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGT-AGTTCTAGAGGTTTGATAAGGGATAGGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
15347517 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCCGGCCCCCTG
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCG
* * * * * * *
15347582 ATCACTGGAACCCTAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATG
584 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACG
* * * * * * *
15347647 AAGAAAAATGTGTCACCGGCACATGCCCGAGGCTAGCATGTGCTACCGCAACCCTCGGTCCGGTC
649 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC-GTTCGGTC
* *
15347712 CGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCATATGCCTAAGTCA
713 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
* * * * * *
15347777 AACCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGAGAATCG
778 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* ** ** *** * * *
15347842 ATCATGTCCCCCTCCGTGTGCTATTGATCCTGCTACTACAACCCTC-GATCTGATCCAAT
843 -CCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTCAG-TCCGGTCCAAT
**
15347901 CTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACG-AA--A-CGA--------GCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
15347954 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGC--GCCGTGGATCGCATAGGGTGGTAGGTGGG
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG-ATAGGGTGGTAGGTGGG
* *
15348017 TTTA-GTACATCTTCATATTT-TG--TGTCCATTGCCATTTTT-TGGCTTGTAAATTCATACAAT
130 TTTAGGCACATCTTCATATTTCTGCATG-CCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
*
15348077 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT
194 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* ** * * * *
15348142 AGAAAC-TTTTAAGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACCTGG
259 TGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGG
* * * * *
15348206 TAGACGTGATCCTTCTATTTTTATTGGCATGCACAAAAAAATTCAGCTAACAACTCAAAGTGTAC
324 TAGAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * * *
15348271 AAGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATTGCTATTGGCAGGAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * * *
15348336 ACCTGTAAAATTTCAAATGCTTTTTAAGGGGGTTTCATTTCTCGAGGTTTGATGAGGGATA-GGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * *
15348400 GACAATATAAGGG-CAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCA
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCC
* * * * **
15348464 TATCACCAGAACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCTC---C------G----G-C
583 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGAC
* * *
15348515 GAAGAAAAATGCGGCACCATCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGATTTGGT
648 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG-TTCGGT
* * * * *
15348580 CCGATCTTAGACTAGGAATGAACTCCATATTCTTAGATTGGGAATGAAC-TCTATATGCCTAAGT
712 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGT
* * * *
15348644 CAACCCACGAAACGAGCATGCGGGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATACGCAAGTCGG
776 CAACCCACGAAAC--G-A-GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * * * * * * **
15348709 GGATTGGTCGTGTCCCCCTCCACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGAT
837 GGA-TCGCCGGGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCCAAT
15348774 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
15348815 AAAATGAGTG
Statistics
Matches: 7896, Mismatches: 904, Indels: 426
0.86 0.10 0.05
Matches are distributed among these distances:
868 3 0.00
869 121 0.02
870 1 0.00
872 1 0.00
873 126 0.02
874 4 0.00
878 30 0.00
879 3 0.00
880 222 0.03
881 228 0.03
882 7 0.00
883 94 0.01
884 325 0.04
885 319 0.04
886 581 0.07
887 238 0.03
888 44 0.01
889 657 0.08
890 400 0.05
891 62 0.01
892 45 0.01
893 266 0.03
894 3 0.00
895 422 0.05
896 149 0.02
897 22 0.00
898 142 0.02
899 62 0.01
900 79 0.01
901 272 0.03
902 275 0.03
903 33 0.00
904 221 0.03
905 452 0.06
906 263 0.03
907 676 0.09
908 5 0.00
909 237 0.03
910 23 0.00
911 1 0.00
912 1 0.00
913 3 0.00
915 2 0.00
916 31 0.00
917 53 0.01
918 1 0.00
919 1 0.00
921 1 0.00
923 91 0.01
924 373 0.05
925 129 0.02
926 2 0.00
927 29 0.00
928 65 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (900 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
AAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
GAAGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGAT
CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCTGGCGATGGTGCCCCGACGAA
GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGTTCGGTCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGCCG
GGTCCCCCTCTATGTGCTGCCGATCCTGCTACCACAACCCTCAGTCCGGTCCAAT
Found at i:15341473 original size:26 final size:26
Alignment explanation
Indices: 15341444--15341511 Score: 91
Period size: 26 Copynumber: 2.6 Consensus size: 26
15341434 TTAGACTGGG
15341444 AATGAACTCCGTATGCTTAGACTCAA
1 AATGAACTCCGTATGCTTAGACTCAA
* ***
15341470 AATGAACTCTGTATGCTTAGACTGGG
1 AATGAACTCCGTATGCTTAGACTCAA
*
15341496 AATGAACGCCGTATGC
1 AATGAACTCCGTATGC
15341512 CTAAGTCAAC
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.31, C:0.21, G:0.22, T:0.26
Consensus pattern (26 bp):
AATGAACTCCGTATGCTTAGACTCAA
Found at i:15343288 original size:26 final size:26
Alignment explanation
Indices: 15343238--15343290 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15343228 TCCGTCTAAT
**
15343238 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
15343264 CTTAGA-TCGGGAATGAACTCAGTATG
1 CTTAGACT-GGGAATGAACTCAGTATG
15343290 C
1 C
15343291 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:15344160 original size:25 final size:26
Alignment explanation
Indices: 15344125--15344176 Score: 88
Period size: 25 Copynumber: 2.0 Consensus size: 26
15344115 CAAGTCTGAT
15344125 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15344151 CTTA-ACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15344176 C
1 C
15344177 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 21 0.84
26 4 0.16
ACGTcount: A:0.27, C:0.19, G:0.25, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15345054 original size:26 final size:26
Alignment explanation
Indices: 15345025--15345077 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15345015 CTGGTCCGAT
15345025 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15345051 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15345077 C
1 C
15345078 CTAATTAACG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15345959 original size:26 final size:26
Alignment explanation
Indices: 15345923--15345981 Score: 95
Period size: 26 Copynumber: 2.3 Consensus size: 26
15345913 CTCGGTCCGG
15345923 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
*
15345947 TCCGTATGCTTAGATTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
15345973 TCCGTATGC
1 TCCGTATGC
15345982 CTAAGTCAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
24 4 0.12
25 3 0.09
26 25 0.78
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:15346858 original size:26 final size:23
Alignment explanation
Indices: 15346819--15346868 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 23
15346809 CCCTCGATCC
15346819 AGTCTGATCTTAGACTGGGAATGA
1 AGTCTGATCTTAGACT-GGAATGA
15346843 AGTCTGTATGCTTAGACTGGAATGA
1 AGTCTG-AT-CTTAGACTGGAATGA
15346868 A
1 A
15346869 CTTCGTAGCC
Statistics
Matches: 24, Mismatches: 0, Indels: 3
0.89 0.00 0.11
Matches are distributed among these distances:
24 6 0.25
25 10 0.42
26 8 0.33
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (23 bp):
AGTCTGATCTTAGACTGGAATGA
Found at i:15347637 original size:889 final size:893
Alignment explanation
Indices: 15338918--15348814 Score: 11611
Period size: 889 Copynumber: 11.0 Consensus size: 893
15338908 ACTCCGTATG
* * *
15338918 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGAGGGCGGACAGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-AGGGCGGACGGGCGGG
* * *
15338983 CAGGCACTACGCCGGCCAGAGAGACGGGATGCCCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
15339048 TTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
15339113 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
15339178 AAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTA
260 AAACTTTTTGC-GTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
* * * * * *
15339243 GACGTGATCCTTGTATTTTTGTTGGCTTGCACAAAATAATTCAGCTAAAAAATCGAACTATACAA
324 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
15339308 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGGCTACTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
15339373 CTGTAAAATCTC-AATGCTCTTTAAGGGGGTGTGAGTTCCCGAGGTTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
15339437 CAATATAAGGGCCAAGTACCAGCACACATTGCACATCATGTGCGCACA------C--CCCCCCGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGA
* * * * * **
15339494 TCG-CTGAACCCCAATGCCGCCGGTCAGGTTCTCC-GCGATGC-CTGGCGATGGTGCGCTGGTGA
584 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGA
* *
15339556 AGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTTCGGTCC
649 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
* *
15339621 GATCCTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAA
714 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
* * * **
15339686 CCCATGAAACGAGCGTGTGGGCGCTCAGTCGGCCGACCAGAGGGGCGGGATGTGCATGTCGGGGT
779 CCCACGAAACGAGCGTGCGGGCGCTCA----GCCGGCCAGAGGGGCGGGA--TGC--G-CAAGG-
* * * ** * * * * *
15339751 TCGACCGAGTCCCTCTCTATGTGCTGTCAATCTTACTACCACAACCCTCAGTCCGATCCGAT
834 TCG-CCGGGTCCCCCTCTATATGCTACCGATCCTGCT-CCACAACCCTCAGTCCGGTCCAAT
* * *
15339813 CTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG-AGTGAGTGGGCGGGCGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAG-G-GCGGACGGGCGG
*
15339877 GCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
64 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
15339942 TTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGTCTTGTAAACTCATACAATG
129 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
15340007 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTGGTTTTCTATTTTTCACGATTTTC
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *** * * * *
15340072 AAAACTTTTTGTGATTCCAAATTTTTTAAAATTTTTTCGGAAGGATTATTAGCCCCAAACCTGGT
259 GAAACTTTTTGCG-TTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGT
* * * * * *
15340137 TGAAGTGATCCTTGTATCTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
323 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
15340202 AGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCA-AGCACTTTACTGGTTACTGGCAGCAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA-CACTTTAATGGCTACTGGCAGCAA
* *
15340266 ACTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAAAGGGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * * *
15340331 GCCAATCTAAAGGCCAAGTACCGGCACCCATCGCACATCACGTGCGCACACCCCTCCGGCCCCCT
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-
* * * * * *
15340396 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCT-CGACGGTGCTCTGGCGATGGTGCCCTGG
581 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* ** * *
15340460 TGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTTCGG
646 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * *
15340525 TCCGATCTTAGACTGGGAATGAATTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGC
711 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
* *
15340590 CAACCCACGAAACGAGCGTGTGGGCGCTCAGCCGGCCAACCAGAGGGGCGGGATGTGCAAGTCGG
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG----CCAGAGGGGCGGGATGCGCAA-----
* * ** * * **
15340655 GGTTCAGCCGGGTCCCCCTCTATGTGATGTCGATCTTACTACCACAACCCTCAGTCCGGTCTGAT
832 GG-TC-GCCGGGTCCCCCTCTATATGCTACCGATCCTGCT-CCACAACCCTCAGTCCGGTCCAAT
* * * * * * *
15340720 CTTAAACTAGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAATG-AGTGAGTGGGCGGGCGA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAG-G-GCGGACGGGCGG
* * * *
15340784 GCGGGCACTACGTCGGCCAGAGAGACGAGATGCACAAGTCGTGGATCGATAGGGTGGTAGGTGGG
64 GCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
15340849 TTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATG
129 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
15340914 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTGGTTTTCTATTTTTCACGATTTTT
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** ** *
15340979 AAAACCTTTTGTGATTTC-AAATTTTTTAAAATTTTTTCGGAAAGATTATTGGCCCCAAACTTGG
259 GAAA-CTTTT-TGCGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGG
* * * *
15341043 TAGAAGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTTGAAGTGTAC
322 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
15341108 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTT-AT-GCTACTGGCAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
15341171 ACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGAG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
15341236 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCC
* * * * *
15341299 TATCGTCGGAACCCTAATCCCGCCGGTCAGGTTCTCCGGCGATGCT-CTAGCGATGGTG-CCCGA
582 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGA-CGATGGTGCCCCGA
* * * *
15341362 CGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCACCATGTGCTGCCACAACCCTCGGTCTGG
646 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
*
15341427 TTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTCAAAATGAACTCTGTATGCTTAGAC
711 TCCGATCTTAGACT-GG---G-A------ATG---A-A--C----T---C-C-GTATGCTTAGAC
** * *
15341492 TGGGAATGAACGCCGTATGCCTAAGTCAACCCACGAAAC-ATGCGTGCGAGAGCTCAGCCGGCCA
750 TGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGGCCA
* ** *
15341556 GAGGGGCGGGATGCACAAGCTGGGGATCGACCGGGTCCCCCTCTACGTGCTACCCATCCTGCTAC
814 GAGGGGCGGGATGCGCAA-----GG-TCG-CCGGGTCCCCCTCTATATGCTACCGATCCTGCT-C
* *
15341621 CACAACCCTCAGTCTGGTCTAAT
871 CACAACCCTCAGTCCGGTCCAAT
* * * * * **
15341644 CTTAGACTGGGAATGACCTCCGTATGCCGAAGCCAACTGACGAAATGACCGCACGGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-AGGGCGGACGGGCGGG
* * * *
15341709 CGGGCACTACGCCGACAAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGCT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
15341774 TTAGGCACATCTTCATATTTCTGCATGCTAATGCCCTTTTTATGGCTTGTAAATTCATACAACGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
15341839 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTTGTTTTCTATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* ** * * *
15341904 AAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTTGGTT
260 AAACTTTTTGC-GTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
* * *
15341969 GACATGATCCTTGTA-TTTTTTTGGGATGCAAAAAAAAATTCAGCTAAAAAC-CTGAAGTGTACA
324 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC-GAAGTGTACA
* * * * *
15342032 AGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCGGAGACTTTAATGGCTACTGGTAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
15342097 CCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTAATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
15342162 CCAATATGAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACA-CCCCCTGGCACCCCA
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CCCCC
* * *
15342226 GATCACCGGAACCCCAATGTCGCCGGTCAAGTTCT-C--C---G----G-CGATGGTGCCCCGAC
582 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGAC
* * * * * *
15342280 GAACAAAAATGAGACACCAGCACATGCACGAGCCCAGCATGTGCTGCCGCAA-CCTCGATCTGGT
647 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * *
15342344 CCGATCTTCGATTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTC
712 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTC
** * *
15342409 AACCCACGAAATAAGCGTGCCGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATC
777 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA-----GG-TC
* * * * * * ** *
15342474 GGCCGGGTCCCCTTCTATGTGCTGCCGATCCTACTGCCGCAACCCTAAGTTTGAT-CAAT
836 -GCCGGGTCCCCCTCTATATGCTACCGATCCTGCT-CCACAACCCTCAGTCCGGTCCAAT
* * * * * *
15342533 CTTAGACTAGAAATGAACTCTGTATGCCTAAGCCAACCGATGAAA-TAA--GCGG-CTAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGGGCGGAC-GGGCGGG
* * *
15342594 CAGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
15342659 TAAGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGA
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
15342724 TCCCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
15342789 AAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA-GTTTGCGCCCCAAACTTGGT
260 AAACTTTTTGC-GTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTG-GCCCCAAACTTGGT
* * * *
15342853 AGACATTATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACA
323 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
15342918 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
15342983 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTCATGAGGGATAAGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
15343048 CCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACA------C--CCCCCCG
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * * *
15343105 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCTGACGATGGTGCCCCGACG
583 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
* * * *
15343170 AAGAAAAGTGCGACACCAGCACATGCCCGAGCACAGCATGTGCTGTCGCAACCCTCGGTCC-GTC
648 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
** **
15343234 TAATCTTAGACTGGGAATGAACTTTGTATGCTTAGA-TCGGGAATGAAC-TCAGTATGCCTAAGT
713 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTTC-GTATGCCTAAGT
* * * *
15343297 CAACCCACGAAACGAGCGTGCGAGCGCTTAGCTGGCCAGAGGGGCGTGATGCGCAAGCCAGGGAT
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC-A---A-GG-T
** * * * * * *
15343362 CGACCGGGTCCCCCTCTGCATGCTGCCAATCTTGCTACCGCAACCTTGA-TCCGGTCCAAT
835 CG-CCGGGTCCCCCTCTATATGCTACCGATCCTGCT-CCACAACCCTCAGTCCGGTCCAAT
* * * *
15343422 CTTAGACTGGGAATGATCTCCGTATGCCTAAACCAATCGAGGAAACG-A-----G-CGGGC---C
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGGGCGGACGGGCGGGC
* * *
15343477 -GGCACTACGCCGGCCAGAGAGACGGGTTGCACAAGCCGTGGATCGATAGAGTGGTAGGTGGGTT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
15343541 TAGGCACGTCTTCATTTTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
131 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
15343606 CTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTTGA
196 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * *
15343671 AAATTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGATTTTTGGCCCGAAACATT-GTA
261 AACTTTTTG-CGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAAC-TTGGTA
* * *
15343735 GA-GAGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCTAAAAACTTGAAGTGTACAA
324 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * * **
15343799 GATTTTGTGACCATTTGAAAAAAGTTTCTCGATTTCAGACACTTTAATGGCTACTGATAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
15343864 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGACGGATAGGGTGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
15343929 CAATATAAGGGCCAAGTACCAACACCCATCACACATCATGTGCGCAC-CCCCCCCGACCCCCCCG
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCCCG
* * * * *
15343993 ATCGCC-GAACCCCAATGCTGTCGGTCAGGTTCTCCGGCGATGCTCTGGC-AGTGGTACCCCGAC
583 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGA-TGGTGCCCCGAC
* * * * * * * **
15344056 GAAGAAAAATGCGACCCCAGCACATGCCCAAGCCCAACATCTGCCGCCGTAACCCTC-GTCAAGT
647 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
*
15344120 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTA-ACTGGGAATGAAC-TCTGTATGCCTAAGT
712 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGT
* * * *
15344183 TAACCCACGAAACGAGCGTGCGGGTGCTCAGCTGGCCAGA-GGGCGGGATGCGAAAGCCGGGATC
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA----GG-TC
* * *
15344247 GATCGGGTCCCCTTCT-TCATGCTACCGATCCTTGCTGCCACAACCCTCGGTCCGGTCCAAT
836 G-CCGGGTCCCCCTCTAT-ATGCTACCGATCC-TGCT-CCACAACCCTCAGTCCGGTCCAAT
* * *
15344308 CTTTGA-TAGGGAATGAACTTCATATGCCTAAGCCAACCGACGAAAGGAGCGGGCAAGTGGGCGG
1 CTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G-AA--GGGCGG
** * * * * *
15344372 GTGGGCGGGTGGGCACTATGCCAGCCAGAGAGACTGGATGCGCAAGCCATGGATCGATAGGGTGG
56 ACGGGCGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
* * * *
15344437 TAGGTGGGTTTAGGCACATCTTCATATTTTTACGTGTCAATGCCATTTTTATGGCTTGTAAATTC
121 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
15344502 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
186 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * ** * *
15344567 TC-ATTTTTGAAACTTTTTCCCGTTCGGGATTTTTTCAAATTTTTTCAAAAAAAGTTTTGGCCCC
251 -CGATTTTTGAAACTTTTT-GCGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCC
*
15344631 AAACTTGGTAGATGTGATCCTTGTATTTTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
314 AAACTTGGTAGACGTGATCCTTGTA--TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
* *
15344696 CGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTCAGACACTTTAATGGCTA
377 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
** *
15344761 CTGATAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
442 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* * * *
15344826 AGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTACGCACA-CCCC
507 GGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC
**
15344890 CCGGCCCCCCCGATCGCCGGAACCAGAATGCCGCCGGTCAGG---T-------T-CTCCGACGAT
572 CCGG-CCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
** * * * * *
15344944 GGTGCCCCGACGAAGAAAAATAAGGCACCAGCACAT-CCTTGAGCCCATCATGTACTGTCGTAAC
636 GGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCC-CGAGCCCAGCATGTGCTGCCGCAAC
* * *
15345008 CCTTGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCG
700 CCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCG
* * * * * *
15345073 TATGCCTAA-TTAACGCACGAAATGAGCGTGCGGGCGTTCAGCCGGCCAAAGGGGCGGGATGCGT
765 TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* *
15345137 AAGCCGGGGATCGGTCGGGTCCCCCTCT-TCATGCTACCGATCCTGCTGCCACAACCTTCAGTCC
830 AA-----GG-TC-GCCGGGTCCCCCTCTAT-ATGCTACCGATCCTGCT-CCACAACCCTCAGTCC
15345201 GGTCCAAT
886 GGTCCAAT
* * * * **
15345209 CTTCGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA-AGGGCGGACGGGCGGG
* * *
15345274 TGGGCACTATGCCGGCCAGAGAGACTGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15345339 TTAGGAACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
15345404 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * ** *
15345469 AAACTTTTTGTGGTTCGGGATTTTTTAAAA-TTTTTCAGAAAGATTTTTGGCCTGAAACTTTGTA
260 AAACTTTTTG-CGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTA
* * * *
15345533 GACGGGATCCTTGCATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTAGAAGTGTACAA
324 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * **
15345598 GATTTTGGGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGATAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
15345663 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
15345728 CGATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCCTGGCCCCCC
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCC-GG-CCCCC
* * * * * *
15345793 CGATCGGCGGAACCCCAATGCCGCCGGTCAAGTTCTTCGGTGACGCTCCGACGAAGGTGCCCCGA
581 CGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGA
* * **
15345858 CGAAGAAAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCCGG
646 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* * *
15345923 TCCGATGTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
711 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
* ** ** * *
15345988 CAACCCATGAATTGAATGTGCGGGCGTTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA-----GG-T
* ** * ** * **
15346053 CAACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGCAACCCTCAGTCTGGTCTGAT
835 C-GCCGGGTCCCCCTCTATATGCTACCGATCCTGCT-CCACAACCCTCAGTCCGGTCCAAT
* * * * * * **
15346114 CTTAGACTAGGAATGAACTTCGTATGCCTAAGCCGATCGGCAAAAC-AAGCGG-GCGAGCGGGAT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAG-GGCG-GA-CGGGCG
* * * * * *
15346177 GCCAGACACTACGTCGGTC-GAAGTGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
63 GGCGGGCACTACGCCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
15346241 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
127 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
15346306 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTCTATTTTTCATGATTT
192 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * *
15346370 TCGTAACTTTTTATG-GTTC-GGATTTTTTTAAAA-TTTTTCAGAAAGAGTTTTGGCCCAAAACT
257 TTGAAAC-TTTT-TGCGTTCGGGA-TTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACT
* * *
15346432 TTGTAGACGTGATCCTTGTA--TTTTTTGGTATGCACAAAAAAATTCACCTAAAAACTCGAAGTG
319 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
15346495 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAG
384 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
15346560 CAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAG
449 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * ** *
15346624 GGTGCCAATATAAGGGCCAAGTACAAGCACCCATCGCACATCGCGTGCGCACA-CCCCCCGACCC
514 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
* * * * * * *
15346688 CACCGATCGCCAGAATCCCAATGTCGTCGGTCAGGTTCTCCGACGATTCTCCGGCGATGGTGCCC
579 C-CCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC
* * * * * * * *
15346753 TGGCGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAACATCTACTG-CGTAAACCCTCGAT
643 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG-CAACCCTCGGT
* * * *
15346817 CCAGTCTGATCTTAGACTGGGAATGAAGTCTGTATGCTTAGACT-GGAATGAACTTCGTA-GCCT
707 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCT
* * * *
15346880 AAGTCAACCCACGAAACGGGCGTGCGGGCGCTCAGTCTGCCAAAGGGGCGGGATGCGCAA-G-C-
772 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGGTCG
* * * ** **
15346942 CCGGGTCCCCCTCTGTATACTATCGATCCTGCTGGAGCAACCCTCAGTCCGGTCTGAT
837 CCGGGTCCCCCTCTATATGCTACCGATCCTGCTCCA-CAACCCTCAGTCCGGTCCAAT
* * * *
15347000 CTTAGACTAGGAATGAGCTCCGTATGCCTAAGCCAACTGACGAAACGAACGGGCGGACGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAA-GGGCGGACGGGCGGG
* * * * * * * * *
15347065 CGGGAACTATGCCGGCCAAAGAGACGAGAGGCACAAGGCATGGATCGATAGGGTGGCAGGTGGGT
65 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15347130 TTAGGCACCTCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
130 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * *
15347195 ACCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGATATTTG
195 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * * * *
15347260 AAACTTTTTGCGTTCGGGATTTTTTAAATTTTTTTCAGAAAAAGTTTTGGTCCCAAACTTGGTAC
260 AAACTTTTTGCGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTAG
* *
15347325 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAGTTCAACCT-AAAACTCGAAGTGTACAA
325 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCGAAGTGTACAA
* *
15347389 GATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTCCTGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
15347454 CTGTAAAATCTTAAATGCTCTTTAAGGGGGTGT-AGTTCTAGAGGTTTGATAAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
15347518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCCGGCCCCCTGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGA
* * * * *
15347583 TCACTGGAACCCTAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGA
584 TCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGA
* * * * * *
15347648 AGAAAAATGTGTCACCGGCACATGCCCGAGGCTAGCATGTGCTACCGCAACCCTCGGTCCGGTCC
649 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCC
* *
15347713 GATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAA
714 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
* * *
15347778 ACCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGTCGAGAATCGA
779 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA---G-G--TCG-
* ** ** * ** * * *
15347843 TCATGTCCCCCTCCGTGTGCTATTGATCCTGCTACTACAACCCTC-GATCTGATCCAAT
837 CCGGGTCCCCCTCTATATGCTACCGATCCTGCT-CCACAACCCTCAG-TCCGGTCCAAT
**
15347901 CTTAGACTGGGAATGAACTCTATATGCCTAAGCCAACCGACG--A--AA---C-GA---GCGGGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGGGCGGACGGGCGGGC
15347955 GGGCACTACGCCGGCCAGAGAGACGGGATGCGC--GCCGTGGATCGCATAGGGTGGTAGGTGGGT
66 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG-ATAGGGTGGTAGGTGGGT
* *
15348018 TTA-GTACATCTTCATATTT-TG--TGTCCATTGCCATTTTT-TGGCTTGTAAATTCATACAATG
130 TTAGGCACATCTTCATATTTCTGCATG-CCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
15348078 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTA
194 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
15348143 GAAACTTTTAAG-GTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACCTGGT
259 GAAACTTTT-TGCGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGT
* * * *
15348207 AGACGTGATCCTTCTATTTTTATTGGCATGCACAAAAAAATTCAGCTAACAACTCAAAGTGTACA
323 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * * *
15348272 AGATTTTGTGACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATTGCTATTGGCAGGAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * * *
15348337 CCTGTAAAATTTCAAATGCTTTTTAAGGGGGTTTCATTTCTCGAGGTTTGATGAGGGATA-GGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * **
15348401 ACAATATAAGGG-CAAGTACCAGAACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCAT
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCG
* * * * *
15348465 ATCACCAGAACCCCAATGCCGTCGGTCAGGTTCT-C--C-A-------ACGA---TGCTCCGGCG
583 ATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACG
* * * **
15348516 AAGAAAAATGCGGCACCATCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGATTTGGTC
648 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * * *
15348581 CGATCTTAGACTAGGAATGAACTCCATATTCTTAGATTGGGAATGAAC-TCTATATGCCTAAGTC
713 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTC
* * *
15348645 AACCCACGAAACGAGCATGCGGGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATACGCAAGTCGGG
777 AACCCACGAAAC--G-A-GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA-----G
* * * * ** * * **
15348710 GATTGGTCGTGTCCCCCTCCACGTGCTGCCGATCCTGCTGCCACAACCCTCGGTCCGGTCTGAT
833 G--TCGCCGGGTCCCCCTCTATATGCTACCGATCCTGCT-CCACAACCCTCAGTCCGGTCCAAT
15348774 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGAC
15348815 AAAATGAGTG
Statistics
Matches: 7873, Mismatches: 901, Indels: 478
0.85 0.10 0.05
Matches are distributed among these distances:
868 2 0.00
869 128 0.02
872 5 0.00
873 120 0.02
874 5 0.00
875 1 0.00
878 34 0.00
879 3 0.00
880 221 0.03
881 229 0.03
882 8 0.00
883 80 0.01
884 329 0.04
885 319 0.04
886 579 0.07
887 235 0.03
888 43 0.01
889 656 0.08
890 400 0.05
891 62 0.01
892 47 0.01
893 268 0.03
894 5 0.00
895 419 0.05
896 149 0.02
897 22 0.00
898 143 0.02
899 65 0.01
900 81 0.01
901 261 0.03
902 278 0.04
903 33 0.00
904 231 0.03
905 444 0.06
906 266 0.03
907 655 0.08
908 10 0.00
909 238 0.03
910 19 0.00
911 1 0.00
912 1 0.00
913 3 0.00
915 2 0.00
916 30 0.00
917 52 0.01
921 1 0.00
922 2 0.00
923 95 0.01
924 366 0.05
925 126 0.02
926 3 0.00
927 33 0.00
928 65 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (893 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAGGGCGGACGGGCGGGC
GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
AACTTTTTGCGTTCGGGATTTTTTAAAATTTTTTCGGAAAGATTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCGATC
GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGACGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGGTCGCCGGGTCCC
CCTCTATATGCTACCGATCCTGCTCCACAACCCTCAGTCCGGTCCAAT
Found at i:15347767 original size:26 final size:26
Alignment explanation
Indices: 15347716--15347768 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15347706 CCGGTCCGAT
* *
15347716 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15347742 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15347768 C
1 C
15347769 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15348623 original size:26 final size:26
Alignment explanation
Indices: 15348584--15348635 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15348574 TTTGGTCCGA
15348584 TCTTAGACTAGGAATGAACTCCATAT
1 TCTTAGACTAGGAATGAACTCCATAT
* * *
15348610 TCTTAGATTGGGAATGAACTCTATAT
1 TCTTAGACTAGGAATGAACTCCATAT
15348636 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.33, C:0.15, G:0.17, T:0.35
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCATAT
Found at i:15349467 original size:26 final size:26
Alignment explanation
Indices: 15349431--15349483 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15349421 TCGGTCTGAT
*
15349431 CTTACACTGGGAATGAACTTTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
*
15349457 CTTAGACTGGGAATGAACTCTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
15349483 C
1 C
15349484 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:15350773 original size:26 final size:26
Alignment explanation
Indices: 15350744--15350795 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15350734 CAGTTCGATG
15350744 TTAGACTGGGAATGAACTCCATATGC
1 TTAGACTGGGAATGAACTCCATATGC
* *
15350770 TTAGATTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCATATGC
15350796 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.17, G:0.25, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCATATGC
Found at i:15357095 original size:26 final size:26
Alignment explanation
Indices: 15357066--15357118 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15357056 CTGGTCTGAT
*
15357066 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15357092 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15357118 C
1 C
15357119 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15357591 original size:903 final size:897
Alignment explanation
Indices: 15353807--15362062 Score: 8159
Period size: 877 Copynumber: 9.4 Consensus size: 897
15353797 AAATAAGTGG
* *
15353807 GGGCACTACG-CGA-TAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGG-GTGTAGGTGGGT
1 GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG-GTAGGTGGGT
* *
15353869 TTAGGCCACATCTTCCATATTTTTGCATGCTAATGCCATTTTTA----TTGTAAATTCATACAAT
65 TTAGG-CACATCTT-CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * * * *
15353930 GGTCCCTTAAGCCTTCACGTGAGGTTTAATGGCAAGATGACTTGTTTTCTATTATTCATGATTTT
128 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTT
* * * *
15353995 TGAAACTTTTTGCGGTTC-GTGATTTTTTAAAATCTTTT-GGAAAGAGCTCTGGCCCCAAACTTG
193 TGAAACTTTTTG-GGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
15354058 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCAAAGTGTA
256 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
15354123 CAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTAAGACACTTTAATGGCTACTGGCAGCA
321 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
15354188 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA-GG
386 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
15354252 GGCCAATATAAGGGCTAAGTACCAGAACCCATCGCACATCATGTGCGCACA---------CCCCC
451 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCC
* *
15354308 CGATC-TCTGGAACCCCAATGCCACCGATCAGGTTCT-C--CG--G-T-----GATGGTGCCCCG
516 CGATCGTC-GGAACCCCAATGCCCCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-
* * * **
15354361 GTGAAGAAAAATACGGCACCAGCACATGCCTGAGCCCAGCATGTGCTGCCACAA-CC-C--T-C-
579 GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCG
15354420 G---G-TC-----C--GG--T----TC-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
644 GTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
15354465 TCAACCCACGAAACGAGTGTACGGGCGCTCAGTCAGCCAGAAGGGCGGGATGCACAAGCCGAGGA
709 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * * ** *
15354530 TCGGCTGGGTCCCCCTCTACGTGCTGGCGATCCTGCTGCCGCAACCCTCAGTCC-AGTCCAACCT
774 TCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAG-CCTGGTCTGATCT
*
15354594 TAGACTGGGAATGAACTCCGTATGCCTCAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
838 TAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * *
15354654 GGGCACTACGTCGACGAGAGAAAC-GGATGCGCAAGCCGTGGATCGA-A-GGT-GTAGGTTGGTT
1 GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * ** *
15354715 TTGGCACTTTCTTC-TGATTTCTGTGTGCTAATTGCCCA--TTTATGGCTTG-AAATTCATA-AA
66 TAGGCAC-ATCTTCAT-ATTTCTGCATGCCAA-TG-CCATTTTTATGGCTTGTAAATTCATACAA
* * * *
15354775 TGGTCCCTTAAGCCTTCACGTGAAATTTCAT-GCAAGA-GACTCGTTTTATATATTTCACGATTT
127 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTT
* * * *
15354838 TTCAAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTC-GAAGGCGTTTTGACCCC-AACT
192 TT-GAAACTTTTT-GGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
15354900 TGGTAGACATGATCCTTGTA-TTTTGTTGGCATG-ATGAAAAAAATTCAGCTAATAAAACTTGAA
254 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCA-CAAAAAAATTCAGCT-A-AAAACTCGAA
* * ** *
15354963 GTGTTCAAGGATTTTTGCGACGCATTTTGAATTAAGTATCCCCATTTTCAGACACTTTTAATGGC
316 GTGTACAA-GA-TTTTGTGAC-CA-TTTGAAAAAAGTGTCCCCA-TTTCAGACAC-TTTAATGGC
* **
15355028 TGACTGGCAAGC-AACCTGTAAAATCTCAAGTGCTCGTTT-AGGGGGTG-GAG-TCTTAAGGTTT
375 T-ACTGGC-AGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTGAGTTCTCGAGGTTT
* * * *
15355089 GATGA-GGATACGGGGCCAATATGAA-GGCCAAGTGCCAGCACCCATCGCTCATCATGTGCGCGC
437 GATGAGGGATAGGGGGCCAATAT-AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC
* * * ** * * ** * * *
15355152 ACCCCCCCGACCCCTCGATCACCTGATCCTTAATG-CCGCGGTCAGG-TCT-CGACGATGCTCTG
501 ACCCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCCCCGGTCAGGTTCTCCGGCGATGCTCCG
* * * * * *
15355214 GCGATGGTG--CCTC--ACAAAAAT--TGCACCAACACATGCCGTGAGCCCAG-ATGTGCTGC--
566 ACGATGGTGCCCCGCGAAGAAAAATGCGGCACCAGCACATGCC-CGAGCCCAGCATGTGCTGCTG
* * * * * * * *
15355270 CAAACCCTTGGTCTGGTCTGATCTTA-A--AGGAA-CAA-TCCAG-ATGCTTAGATTGGAAATG-
630 C-AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACT-CTGTATGCTTAGACTGGGAATGA
* * * * ** * **
15355328 AGTCCGAAATATGCCT-GGTCAACCCAC-AAATGAGCTTGCAAGCGCTCAGCCGACCA-AAAGGC
693 ACTCCG---TATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGC
* * * * * *
15355390 GGG-TACGCAAAGCC-GGGATCGACCGGGT--TCTTC-ACATGCTGGCCAGA-ACTAC-G--GCT
755 GGGATGCGC-AAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCT-GCC-GATCCTACTGCCGC-
** * * * * *
15355446 AACCCTTTGGTCTGGTCTGATC-TAGAC--GGAAT-AATTCCGTATGCTTAAG-CAATC-ATG--
816 AACCC-TCAGCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAA
*
15355503 A-GA---------C-AGC
880 ACGAGCGGGCGGGCGGGC
* * * * *
15355510 GAGCACTACG-CCAGCCAAAGAGACGGGCAT-CGTTCAAGTCG-GGATCGATTA-GGTGGTAAG-
1 GGGCACTACGTCGA-CCAGAGAGACGGG-ATGCG--CAAGCCGTGGATCGA-TAGGGTGGTAGGT
* *
15355570 GGGTTTAGGCACATCTTCATATTT-TGCATG-CAATGCC--TCTT-TGG-ATGTAAATTCATA-A
61 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
15355628 A--GTCCCTTAAG-CTTCACGTGAAGTTTAATGGCCCAAGACGACTCG-TTTCTA-TTTTCACA-
126 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGG--CAAGACGACTCGTTTTCTATTTTTCA-AG
** *
15355687 ATTTTTTGAAACTTTTTATAGTTCAGGATTTTTTAAAATTTCTTT-GGAAGGAGTTTTAGCCCCA
188 A-TTTTTGAAACTTTTT-GGGTTCAGGATTTTTTAAAATTT-TTTCGGAAGGAGTTTTGGCCCCA
* *
15355751 AACATGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
250 AACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
*
15355816 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGGCACTTTAATGGCTACTG
315 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* * * *
15355881 GCAGCAAACCTGTAAAATCTCAAAATGCTTTTTAAAGGGGTGTGAGTTGTCAAGGTTTGATGAGG
380 GCAGCAAACCTGTAAAATCTC-AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* *
15355946 GATAGGGGCCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACATCCCCCC
444 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
* * * * * **
15356011 TGGCCCCCCCGATCGTCGGAACCCCATTGTCGCCC-ATCAAGTTCTCTGGCGATGCTCCGGTGAT
508 -GGCCCCCCCGATCGTCGGAACCCCAATG-CCCCCGGTCAGGTTCTCCGGCGATGCTCCGACGAT
* * * * *
15356075 GGTGCCCCGGTGAAGAAAAATGCGGCACCAGCACTTGTCCGAGCCCAGCATGTGCTGCCGTAACC
571 GGTGCCCC-GCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACC
* * **
15356140 CTCGGTCCGGTCCGATCTTTGACTGGGAATGTACTCCATATGCTTAGACTGGGAATGAACTCCGT
635 CTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGT
* * * * *
15356205 ATGCCTAAGTCAACCCACGAAACGAGTAG-GCGGGCACTAAGCCGGCCAGAGGGGTGGGATGCGT
700 ATGCCTAAGTCAACCCACGAAACGAG-CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGC
* ** * * *
15356269 AAGTCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTC-GATCT
764 AAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAG-CCT
* * *
15356333 -ATTTCGATCTTAGACTGGGAATGAACTCCGTATG-CTCAGCCAACCGACGAAACGAGTGGGCGA
828 GGTCT-GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCG-
15356396 ACGTGCGGGCCGGCAGGC
887 --G-GCGGG-C-G--GGC
* * *
15356414 GGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGGGGGGTT
1 GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
15356479 TAGGCACATCTTCATATTTCTGCATACCAATGCCATTTTTATGGCTTGTAAATTCATAGAATGGT
66 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
15356544 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTTGA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGA
* * * *
15356609 AACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCAAAACTTGGTAG
196 AACTTTTTG-GGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
15356674 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAG
260 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
15356739 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
325 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * ** *
15356804 TGTAGAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATATAGGGAC
390 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
15356869 AATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTACGCACACCCCCCGGCCCCCCCGAT
455 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * *
15356934 CGTCGAAACCCCAATGCCCCCAGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGGTGAA
520 CGTCGGAACCCCAATGCCCCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCC-GCGAA
* * * * *
15356999 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGCGCTGCTGCAACCCTCGATCTGGTCTG
584 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCG
15357064 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
649 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
15357129 CCACGAAACGAGCGTGAGGGCGCTCAACCGTCCAGAGGGGCGGGATGCGCAAGCCGAGGATTGGC
714 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGC
* ** * * * *
15357194 CGGGTCCCCCTCTACGTGTTGCCGATCCTACTATCACAACCCTCACCCTGATCTGATATTAGACT
779 CGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGCCTGGTCTGATCTTAGACT
* * *
15357259 GGGAATGAACTCCGCATGCCTAAGCCAACCAATGAAACGAGTGGGCGGGCGGGCGGGC
844 GGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----GCGGGCGGGCGGGC
* * * *
15357317 GAGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
1 GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
15357382 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGGT
66 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
15357447 CCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGA
* * *
15357512 AACTTTGTGGGCTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
196 AACTTTTTGGG-TTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
15357577 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAG
260 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
15357642 ATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATTGGCAGCAAACC
325 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
15357707 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
390 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * *
15357772 AATATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCACAGACCCCCCAGG--CCCCCGA
455 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCGA
** * * * *
15357835 TCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCAATGGTG--CC-C---
519 TCGTCGGAACCCCAATGCCCCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGCGAA
* **
15357894 -----A----G-----G-ACATGCCCGAGCCCAGCATGTGCTG-TCACAACCCTTTGTCCGGTCC
584 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCT-GCAACCCTCGGTCCGGTCC
* * *
15357943 GATCTTAGACTGGGAATGCACT-TCGTATGCTTAGACTGGGAATTAACTCTGTATGCCTAAGTCA
648 GATCTTAGACTGGGAATGAACTCT-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * *
15358007 ACGCTCGAAACGAGCGTGCGGGCGCTCAGGCCGGCCAGAGGGGCGGGGTGCGCAAGCCGGGGATC
712 ACCCACGAAACGAGCGTGCGGGCGCTCA-GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * *
15358072 GGCCTGGTCCCCCTC-ATCGTGCTGCCGATCTTACTACTGCAACCCTCGGTCTGGTTTGATCTTA
776 GGCCGGGTCCCCCTCTA-CGTGCTGCCGATCCTACTGCCGCAACCCTCAGCCTGGTCTGATCTTA
* *
15358136 GACTAGGAATGAACTCCGTATGCCTAAGTCAACCGACGAAACGAGCGGGCGGGCGGGC
840 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* ** * * *
15358194 GGGCACTACGCCGTTCGGAGAGATGGGATGCGAAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
1 GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
15358259 TAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTGAATTCATACAATGGT
66 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
*
15358324 CCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGA
* * *
15358389 AACTTTGTGGGCTTCAAGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAG
196 AACTTTTTGGG-TTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
15358454 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTTAGCTAAAAACTCGAAGTGTACAAG
260 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
15358519 ATTTTGTGACCATTTGAAAAAAGTGTGCCCATTTCAGACACTTTAATTGCTACTGGCAGCAAACC
325 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
15358584 TGTAAAATCTCAAATACTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
390 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
15358649 AATATAAGGGCCAAGTACCAGCACCCATCACACATCAAGTGCGCACA-CCCCCGGCCCCCCCTGA
455 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC-GA
* * * * * * * * *
15358713 TCGCCGAAACCCCAATGCCACCGATCAGGTTCTCTGGAGATGCTCCGATGATGGTGACCGGACGA
519 TCGTCGGAACCCCAATGCCCCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCG-CGA
*
15358778 AGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCTGCAA----C---CC--T-C
583 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCC
*
15358833 GATC-----C--GG--T---C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCCTACGTCAA
648 GATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
15358882 CCCACGAAACGAGCATGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATACGCAAGCCGAGGATCGG
713 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGG
* * ** * *
15358947 CCGGGTCCCCCTCTACGTGCTGCCAATCCTACTGTCGCAACCCTCAGCCCAGTCCGAACTTAGAC
778 CCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGCCTGGTCTGATCTTAGAC
* *
15359012 TGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACAAGCGGGCTGGCAGACGGGC
843 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC-GG--G-CGGGC
* * * * * * * * *
15359071 AGGCATTACGTCGAACAGAGAGACGGGTTACACAAGCCGTGGATCGATTGGGTGATAGGTGAGTT
1 GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
15359136 TTGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
66 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * *
15359201 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATATTCGA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGA
* * * * *
15359266 AACTTTTTTTGGTTCGGGATATTTTAAAATTTTTT-GAAAGGAGTTTTGGCCCTAAAC-TGG-A-
196 AAC-TTTTTGGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* ** * *** * * *** **
15359327 AC-TG-TACAAG-A--TTTG-TGACCAT--TTGAAAAAAGT--GTTCCCATTTC--A--G-AC-A
260 ACGTGATCCTTGTATTTTTGTTG-GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* ** * * * * * ** *** * * *
15359376 -CTTTAATGGCTACTAGCAGCAAACCTGT-AAAATCTCAAATGCTCTTTAA-GG-----GG--G-
324 GATTTTGTGACCATTTG-A-AAAAAGTGTCCCCATTTCAGA--CACTTTAATGGCTACTGGCAGC
* ** * * * * * ** * * **
15359430 -----TGTGAGTTCTC-GA-GGT-TTGATGAGGGATAG-G-GGGC-C-A---AT-ATAAGGGCCA
385 AAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGGT-GTGAGTTCTCGAGGTTTGATGAGGGATA
* ** ** ** ** * * ** * ** *
15359479 -AGTACCAGCACCCATCGCACATCATGTGCGCA-CCCCCCCCGGCCCCCCCAATCGT-CGGA-AC
448 GGGGGCCAATA-TAAGGGC-CA--A-GTAC-CAGCACCCATC-G-CACATC-AT-GTGCGCACAC
*** * * ** * ** * * * *
15359540 CCCAATG--CCGCCGAT--TAGGTTCTCCGATGATG-ATCCGGTGATGGTGAC-CCGACGAAG--
503 CCCCCGGCCCCCCCGATCGTCGGAAC-CCCA--ATGCCCCCGGTCA-GGT-TCTCCGGCGATGCT
*** ** * * **** ** * *
15359597 AAAAAAAT-G-G-CAC-C--AGCACATGCCCGAGC-CCAGCATGTGCTGCCGTAACCC-TCA-GT
563 CCGACGATGGTGCCCCGCGAAG-AAAAATGCG-GCACCAGCACATGC--CCG-AGCCCAGCATGT
* * * * ** * * *
15359653 -CTGATCCGA-TCTTAGACTGGGAATGAACTCCATGCTTAGACTGGGAATGAACTC------C--
623 GCTGCTGCAACCCTCGGTC-CGG--T---C-CGAT-CTTAGACTGGGAATGAACTCTGTATGCTT
* *
15359708 --A-T----ATG----CC-TA---C---GTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGG
680 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * ** ** *
15359755 CCAGAGGGGCGGGATGCACAAGCTGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCTGATCCTAC
745 CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTAC
* * * * *
15359820 TGCCACAACCCTCGATCC-GGTCTGATCTTAGAGTGGGAATGAACACCGTATGCCTAAGCGAACC
810 TGCCGCAACCCTC-AGCCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACC
15359884 GACGAAACGAGCGGGCGGGTAGACGGGC
874 GACGAAACGAGCGGGC-GG--G-CGGGC
* * * * * *
15359912 GGGCACTACGCCGACCAGAGAGACAGGATGTGCAAGCCATGGATCGATA-GGTGCTAGGTGTGTT
1 GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
*
15359976 TAGGCACAAT-TTCATATTTATGCATGCCAACT-CCATTTTTATGGCTTGTAAATTCATACAATG
66 TAGGCAC-ATCTTCATATTTCTGCATGCCAA-TGCCATTTTTATGGCTTGTAAATTCATACAATG
* * *
15360039 GTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCACGATTTTT
129 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTT
*
15360104 GAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
194 GAAACTTTTTG-GGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
15360169 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAG-TGAAAAACTCAAAGTGTAC
258 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTAC
15360233 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
322 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * *
15360298 ACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGATAGGGG
387 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
15360363 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCA
452 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCC
* ** * * * **
15360428 GATCGTTGGAA-CCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGCGACCCAAC
517 GATCGTCGGAACCCCAATGCCCCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTG-CCCCGC
* **
15360492 GAAGAAAAATGCGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCCCAACCCTCGGTCCGGT
581 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGT
*
15360557 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTC
646 CCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTC
* * * * * *
15360622 AACCCACGAAACGAACGTGCGGTAC-CTCAGCCGACTAGAGGGGCAGGATGCGCAAGTCGGGGAT
711 AACCCACGAAACGAGCGTGCGG-GCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * * * *
15360686 CGGTCGGGTCCCCTTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTCAGTCTGGTCCGATCTTA
775 CGGCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGCCTGGTCTGATCTTA
* *
15360751 AACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGC
840 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
15360809 GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
1 GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * *
15360874 TTGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGT
66 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * **
15360939 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAA
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGA
* * * **
15361004 AACTTTTTGTGGTTCTGGATTTTTAAAAATTTTTTTGGAAGGAGTTTTTTCCCCAAACTTGGTAG
196 AACTTTTTG-GGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
15361069 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
260 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
15361134 ATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATGGCTAATGGTC-GCAAAC
325 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-CAGCAAAC
* * *
15361198 CTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCACGAGGTTTGATAAGGGATAGGGGGC
389 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * * *
15361263 CAATATAATGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCGACCCCCCG
454 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCCCCCG
* ** * * * *
15361328 ATCGTCGGAACCCCAATGCCGCCAATCAAGTTCTCCGGCGACGCTCCGACAATGGTGCCCTTGCG
518 ATCGTCGGAACCCCAATGCCCCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCC-CGCG
** *
15361393 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTGGGTCCGGTC
582 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTC
* *
15361458 CGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTA
647 CGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ** * *
15361523 ACCAATGAAACGAGCGTGCGGGCTTTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCG
712 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* ** * ** * *
15361588 ACCGGGTCCCCCTCTGTGTGCTACCGATCCTGTTGCCGTAACCCTCGATCC-GGTCTGATCTTAG
777 GCCGGGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTC-AGCCTGGTCTGATCTTAG
* *
15361652 ATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA----ACGGGCGGGC
841 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * *
15361705 GGGCACTACGTTGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
1 GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
15361770 TAGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGT
66 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
15361835 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATA-ATTTTTG
131 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-AGATTTTTG
*
15361899 AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCTGAAGTG-GTTTTGGCCCCAAACTT-GT
195 AAACTTTTTG-GGTTCAGGATTTTTTAAAATTTTTTCGGAAG-GAGTTTTGGCCCCAAACTTGGT
* *
15361962 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
258 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
*
15362027 ACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
323 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
15362063 GATCTGATCT
Statistics
Matches: 6130, Mismatches: 860, Indels: 790
0.79 0.11 0.10
Matches are distributed among these distances:
833 2 0.00
834 19 0.00
835 5 0.00
836 9 0.00
837 15 0.00
838 4 0.00
839 8 0.00
840 163 0.03
841 240 0.04
842 25 0.00
843 40 0.01
844 84 0.01
845 91 0.01
846 51 0.01
847 54 0.01
848 54 0.01
849 47 0.01
850 105 0.02
851 90 0.01
852 66 0.01
853 67 0.01
854 69 0.01
855 41 0.01
856 66 0.01
857 30 0.00
858 44 0.01
859 53 0.01
860 59 0.01
861 22 0.00
862 17 0.00
863 25 0.00
864 26 0.00
865 5 0.00
866 9 0.00
867 21 0.00
868 20 0.00
869 41 0.01
870 20 0.00
871 40 0.01
872 13 0.00
873 157 0.03
874 113 0.02
875 59 0.01
876 60 0.01
877 717 0.12
878 88 0.01
879 32 0.01
880 174 0.03
881 144 0.02
882 31 0.01
883 8 0.00
885 2 0.00
886 2 0.00
890 10 0.00
891 1 0.00
893 2 0.00
894 3 0.00
895 101 0.02
896 241 0.04
897 54 0.01
898 422 0.07
899 23 0.00
900 341 0.06
901 156 0.03
902 67 0.01
903 491 0.08
904 51 0.01
905 7 0.00
906 8 0.00
907 5 0.00
908 4 0.00
909 8 0.00
910 311 0.05
911 36 0.01
912 103 0.02
913 212 0.03
914 26 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (897 bp):
GGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAAGATTTTTGA
AACTTTTTGGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
GTCGGAACCCCAATGCCCCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGCGAAGA
AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCCGGTCCGAT
CTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGGCCG
GGTCCCCCTCTACGTGCTGCCGATCCTACTGCCGCAACCCTCAGCCTGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
Found at i:15357996 original size:26 final size:26
Alignment explanation
Indices: 15357946--15357998 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15357936 CCGGTCCGAT
*
15357946 CTTAGACTGGGAATGCACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
*
15357972 CTTAGACTGGGAATTAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
15357998 C
1 C
15357999 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 2 0.08
26 22 0.92
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15359695 original size:24 final size:24
Alignment explanation
Indices: 15359663--15359709 Score: 94
Period size: 24 Copynumber: 2.0 Consensus size: 24
15359653 CTGATCCGAT
15359663 CTTAGACTGGGAATGAACTCCATG
1 CTTAGACTGGGAATGAACTCCATG
15359687 CTTAGACTGGGAATGAACTCCAT
1 CTTAGACTGGGAATGAACTCCAT
15359710 ATGCCTACGT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (24 bp):
CTTAGACTGGGAATGAACTCCATG
Found at i:15360613 original size:26 final size:26
Alignment explanation
Indices: 15360562--15360614 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15360552 CCGGTCCGAT
**
15360562 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15360588 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15360614 C
1 C
15360615 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15361102 original size:898 final size:896
Alignment explanation
Indices: 15359329--15362062 Score: 4133
Period size: 900 Copynumber: 3.0 Consensus size: 896
15359319 AAACTGGAAC
* *
15359329 TGTACAAGA-TTTGTGACCATTTGAAAAAAGTGTTCCCATTTCAGACACTTTAATGGCTACTAGC
1 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
*
15359393 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
66 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGAT
*
15359458 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACCCCCCCCGGCC
131 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-C
* * * *
15359523 CCCCCA-ATCGTCGGAACCCCAATGCCGCCGATTAGGTTCTCCGATGATGATCCGGTGATGGTGA
195 CCCCCAGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGATGATGGTGA
* *** ** *
15359587 CCCGACGAAGAAAAAAATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGTAACCCTCAG
260 CCCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGG
* * *
15359652 TCTGATCCGATCTTAGACTGGGAATGAACTC-CATGCTTAGACTGGGAATGAACTCCATATGCCT
325 TCCGGTCCGATCTTAGACTGGGAATGAACTCTTATGCTTAGACTGGGAATGAACTCCATATGCCT
* * * *
15359716 ACGTCAACCCACGAAATGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCACAAGCTGG
390 AAGTCAACCCACGAAACGAGCGTGC-GGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGC-GG
* * *
15359781 GGATCGATCGGGTCCCCCTCTGTGTGCTGCTGATCCTACTGCCACAACCCTCGATCCGGTCTGAT
453 GGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGAT
* * *
15359846 CTTAGAGTGGGAATGAACACCGTATGCCTAAGCGAACCGACGAAACGAGCGGGCGGGTAGACGGG
518 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-AG-CGGG
* * * * * *
15359911 CGGGCACTACGCCGACCAGAGAGACAGGATGTGCAAGCCATGGATCGATA-GGTGCTAGGTGTGT
579 CGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
15359975 TTAGGCACAAT-TTCATATTTATGCATGCCAACT-CCATTTTTATGGCTTGTAAATTCATACAAT
644 TTAGGCAC-ATCTTCATATTTCTGCATGCCAA-TGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
15360038 GGTCCATTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTCTCACGATTTT
707 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* *
15360103 TGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGG
772 TGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGG
*
15360168 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAG-TGAAAAACTCAAAG
837 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCAAAG
15360228 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
1 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
15360293 AGCAAACCTGTAAAATCTGAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATAAGGGAT
66 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGAT
15360358 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
131 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
* * * *
15360423 CCCCAGATCGTTGGAA-CCCAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGATGATGGCGAC
196 CCCCAGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGATGATGGTGAC
* *
15360487 CCAACGAAGAAAAATGCGGCACCAGCACTTGCCCGAGCCCAGCATGTGCTGCCCCAACCCTCGGT
261 CCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
15360552 CCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCCT
326 CCGGTCCGATCTTAGACTGGGAATGAACTCT-TATGCTTAGACTGGGAATGAACTCCATATGCCT
* * *
15360617 AAGTCAACCCACGAAACGAACGTGCGGTAC-CTCAGCCGACTAGAGGGGCAGGATGCGCAAGTCG
390 AAGTCAACCCACGAAACGAGCGTGCGG--CGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAG-CG
* * * * * *
15360681 GGGATCGGTCGGGTCCCCTTCTGCGTGCTGCCGATCCTGCTACCGCAACCCTC-AGTCTGGTCCG
452 GGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCGA-TCCGGTCTG
*
15360745 ATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCG
516 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCG
15360810 GGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
581 GGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
15360875 TGGCACATCTTCATATTTCTGTATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGGTC
646 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* **
15360940 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAA
711 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * **
15361005 ACTTTTTGTGGTTCTGGATTTTTAAAAATTTTTTTGGAAGGAGTTTTTTCCCCAAACTTGGTAGA
776 ACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
15361070 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
841 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
* * *
15361126 TGTACAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTGATGGCTAATGGT
1 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGG-
* *
15361191 C-GCAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTGAGTTCACGAGGTTTGATAAGGGA
65 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGA
* *
15361255 TAGGGGGCCAATATAATGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCTCG
130 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-CG
* * * * * **
15361320 ACCCCCC-GATCGTCGGAACCCCAATGCCGCCAATCAAGTTCTCCGGCGACGCTCCGACAATGGT
193 GCCCCCCAGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGATGATGGT
**
15361384 G-CCCTTGCGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
258 GACCC-AACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCT
* *
15361448 GGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTATATGCTTAGACTGGGAATGAACTCCGTAT
322 CGGTCCGGTCCGATCTTAGACTGGGAATGAACTCT-TATGCTTAGACTGGGAATGAACTCCATAT
* * * *
15361513 GCCTAAGTTAACCAATGAAACGAGCGTGCGG-GCTTTCAGTCGGCCAGAGGGGCAGGATGCGCAA
386 GCCTAAGTCAACCCACGAAACGAGCGTGCGGCGC--TCAGCCGGCCAGAGGGGCAGGATGCGCAA
* * * *
15361577 GCCGGGGATCGACCGGGTCCCCCTCTGTGTGCTACCGATCCTGTTGCCGTAACCCTCGATCCGGT
449 G-CGGGGATCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGT
* *
15361642 CTGATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAAC--G-G-GCGG
513 CTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGG
* * *
15361703 GCGGGCACTACGTTGGCCAGAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGG
578 GCGGGCACTACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
15361768 TTTAGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATG
643 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
**
15361833 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTT
708 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
15361898 GAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCT-GAAGTG-GTTTTGGCCCCAAACTT-
773 GAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTT-TGGAAG-GAGTTTTGGCCCCAAACTTG
*
15361960 GTAGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
836 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
*
15362021 TGTACAACATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
1 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
15362063 GATCTGATCT
Statistics
Matches: 1673, Mismatches: 139, Indels: 50
0.90 0.07 0.03
Matches are distributed among these distances:
895 99 0.06
896 239 0.14
897 56 0.03
898 418 0.25
899 163 0.10
900 508 0.30
901 188 0.11
902 2 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGAT
AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
CCCCAGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCTCCGATGATGGTGAC
CCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGT
CCGGTCCGATCTTAGACTGGGAATGAACTCTTATGCTTAGACTGGGAATGAACTCCATATGCCTA
AGTCAACCCACGAAACGAGCGTGCGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCGGGGA
TCGATCGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTGCCGCAACCCTCGATCCGGTCTGATCTT
AGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCGGGCGGGCAC
TACGTCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTT
TTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
Found at i:15361513 original size:26 final size:26
Alignment explanation
Indices: 15361462--15361514 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15361452 CCGGTCCGAT
*
15361462 CTTAGACTGGGAATGAACTCTATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15361488 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15361514 C
1 C
15361515 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15363523 original size:26 final size:26
Alignment explanation
Indices: 15363494--15363543 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15363484 CTGGTCCGAT
15363494 CTTAGACTAGGAATGAACTCCGTAAG
1 CTTAGACTAGGAATGAACTCCGTAAG
* *
15363520 CTTAGACTGGGAATGAAGTCCGTA
1 CTTAGACTAGGAATGAACTCCGTA
15363544 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.18, G:0.26, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTAAG
Found at i:15365316 original size:26 final size:26
Alignment explanation
Indices: 15365287--15365339 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15365277 CCGGTCTGAT
*
15365287 CTTAGACTAGGAATCAATTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
* *
15365313 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATCAACTCCGTATG
15365339 C
1 C
15365340 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTAGGAATCAACTCCGTATG
Found at i:15365550 original size:900 final size:897
Alignment explanation
Indices: 15362769--15365605 Score: 4055
Period size: 893 Copynumber: 3.2 Consensus size: 897
15362759 GGTCCGATCC
* ** * *
15362769 GATCTTAGACTGGGAATGAACTCCGTATACCTCAA-CCAACCGGTGAAACAAACAGGTGGGCGGG
1 GATCTTAGACTGGGAATGAACTCCGTATGCCT-AAGCCAACCGACGAAAC---GA-GCGGGCGGG
* * *
15362833 CAAGAGGGCAAGCACTACGCCGGCCAGATAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
61 C--GAGGG---GCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGT
*** *
15362898 AGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCA
121 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGA
* *
15362963 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCAT
186 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAT
* * * *
15363028 GATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTTGAAAGGAGTTTTGGCCCCCA
251 GATTTTTGAAACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAA
* *
15363093 ACTTGGTAGACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGA
316 ACTTGGTAGACGTGATCCTTGTA-TTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGA
* * *
15363158 AGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCAATTCAGACACTTTAATGGCTACTA
380 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* **
15363223 GCAGCCAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTTTGTTCTCGAGGTTTGATGAGGG
445 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * * * *
15363288 ATAGGGGGCCAATATAATGGCCAAGTACTAGCATCAATCGCACATCAGGTGCGCACACCCCCCGG
509 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG
* * * * * * *
15363353 -CCCCCCGATCGTCAAAACCCTAATGTCGTCGGTAAGGTTCTCC-AGTGATGCTCCAACGATGGT
574 CCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGACGATGGT
* * ** *
15363416 GCCCCGGTGAAGAAAAATGCAGCACCAGCTCATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
638 GCCCCGATGAAGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * *
15363481 GGTCTGGTCCGATCTTAGACTAGGAATGAACTCCGTAAGCTTAGACTGGGAATGAAGTCCGTATG
703 GGTCCGGTCTGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
* *
15363546 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA-ACTGGACAGAGGGGCAGGATGCGTAAG
768 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGAC-GGCCAGAGGGGCAGGATGCGCAAG
* * * ** * * * *
15363610 CCGGGGATCGACTGGGTCCCCCTCTGCGTGCTGCTGATCCTGCTGCCGCAACCCTCGGTCCGGTC
832 CCGGGGATCAACCGGGTCCCCCTCCGTATGTTGCCGATCCTGCTGCCGCAACACTCGATCCGGTC
*
15363675 C
897 T
* *
15363676 GATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAACGGGCGGGCGA--
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGAGG
* * *
15363739 -GCACTACGTCGGCCAGAGAGACGGGATGCACAAGCCGTGGAACGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
15363803 AGGCACATCTTCATATTTCAGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTC
131 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTC
*
15363868 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* *
15363933 ACTTTTTGCAGTTCAAGATTTTTTAAAATTTTTTCTGAAGTG-GTTTTGGCCCCAAACTT-GTAG
261 ACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAG-GAGTTTTGGCCCCAAACTTGGTAG
* *
15363996 ATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
15364061 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
15364126 TGTAAAATCTCAAATGCTCTTTAAGGTGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGG-GGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * **
15364191 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCAAACCCCCCGGCCCCTCTTAT
519 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * * *
15364256 CGTCGAAACCCCAATACCTCCGG-CTTGGTTCTCCGACGATGCTACGACGATGGTACCCCGATGA
584 CGTCGAAACCCCAATGCCGCCGGTC-AGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGA
* * * * *
15364320 AGAAAATA-TGACACCAGCACATGCCCGAGCCCAGCACGTGCTGCCGCAACCTTCGGTCCAGTCT
648 AGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
* * * * **
15364384 AATCTTATACTGGGAAAGAACTCCGTATGCTTAGACCAGGAATGAACTCCGTATGCCTAAGTCAA
713 GATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * *
15364449 CCCACGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGGCAGGATGCGCTAGCCGGGGATCAA
778 CCCACGAAACGAGCGTGCGGGCGCTCAGACGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAA
* * * * *
15364514 TCGGGTCCCCCT-C-TACGTGTTGCCGATCATGCTACCACAACACTCAATCCGGTCT
843 CCGGGTCCCCCTCCGTA--TGTTGCCGATCCTGCTGCCGCAACACTCGATCCGGTCT
* * * *
15364569 GATCTTAGACTGGGAATGAACTCCGTATGTCTAAGCCAACTGACGAAACGAGCGGACGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGAG-
* *
15364634 GGGCACTACACCGGCCAAAGAGACGGGCTGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
65 GGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
15364699 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGT
130 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGT
* * * * *
15364764 CCCTTAAGCCTTCACGTGAAGTTTCATGCCAAGCCGACTCGTTTTCTATTTCTCACGATTTTTTA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* *
15364829 AACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCGCCAAACTTGGTAG
260 AACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
15364894 ACGGGATCCTTGTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
15364959 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC-GAACACTTTAATGGCTACTGGCAGCAAAC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG-ACACTTTAATGGCTACTGGCAGCAAAC
* * *
15365023 CTGTAAAATCTCAAATGCTTTTTAAGTGGGTGCGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
15365088 CAATATAAGGGCCAAGTTCCAGCACCCATCGCACATCATGTGCGCACACCCGCCCGGCCCCCCCG
518 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCCCG
* * * ** * *
15365153 ATCGTCGGAACCCCAATGCCGCCGGTCAGGATCTCCGACGCTGCTCCGGTGATGGTGCCCTGACG
582 ATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATG
* * * * *
15365218 AAAAAAAAAGTGGCACCAGCACATGCCTGACCCCAGCATGTGCTGGCGCAACCCTCAGTCCGGTC
647 AAGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* *
15365283 TGATCTTAGACTAGGAATCAATTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
712 TGATCTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * * *
15365348 ACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCA
777 ACCCACGAAACGAGCGTGCGGGCGCTCAGACGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCA
* * *
15365413 ACCAGGTCCTCCTCCGTATGTTGCCGATCCTGCTGTCGCAACACTCGATCCGGTCT
842 ACCGGGTCCCCCTCCGTATGTTGCCGATCCTGCTGCCGCAACACTCGATCCGGTCT
* *
15365469 GATCTTAGACTGGGAATGAGCTCCGTATGCCTAAGCCAACCGACGAAACGAGTGGGCGGGCGAGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGAG-
* * * *
15365534 GGGCACTACGCCGGCCAAAGAGACGGGCTGCGCAAGCCATGGATCGATAGAGTGGTAGGTGGGTT
65 GGGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
15365599 TAGGCAC
130 TAGGCAC
15365606 TGTAGACACT
Statistics
Matches: 1722, Mismatches: 186, Indels: 51
0.88 0.09 0.03
Matches are distributed among these distances:
892 2 0.00
893 474 0.28
894 78 0.05
895 234 0.14
896 2 0.00
897 236 0.14
898 235 0.14
899 69 0.04
900 334 0.19
901 3 0.00
902 2 0.00
903 8 0.00
904 1 0.00
906 2 0.00
907 42 0.02
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.25
Consensus pattern (897 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGAGG
GGCACTACGCCGGCCAAAGAGACGGGATGCACAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTGATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
ACTTTTTGCGGTTCAAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAA
TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCG
TCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGA
AAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGAT
CTTAGACTAGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGACGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCAACCG
GGTCCCCCTCCGTATGTTGCCGATCCTGCTGCCGCAACACTCGATCCGGTCT
Found at i:15365653 original size:20 final size:21
Alignment explanation
Indices: 15365615--15365653 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
15365605 CTGTAGACAC
15365615 TCAATTGGGTCCAGGCCCAGA
1 TCAATTGGGTCCAGGCCCAGA
*
15365636 TCAATTGGG-CCTGGCCCA
1 TCAATTGGGTCCAGGCCCA
15365654 AATGGGTAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.21, C:0.31, G:0.28, T:0.21
Consensus pattern (21 bp):
TCAATTGGGTCCAGGCCCAGA
Found at i:15365781 original size:22 final size:22
Alignment explanation
Indices: 15365756--15365901 Score: 70
Period size: 22 Copynumber: 7.1 Consensus size: 22
15365746 TGTTTTATTA
15365756 TTTATTATTATTATATGTATAT
1 TTTATTATTATTATATGTATAT
*
15365778 TTTATT-TT-TT-T-TCT-T-T
1 TTTATTATTATTATATGTATAT
* *
15365794 TTTGTTAATATGTATATGTAT-T
1 TTTATTATTAT-TATATGTATAT
*
15365816 TTTATATAGTTA-TATATTTATTAT
1 TTTAT-TA-TTATTATATGTA-TAT
* *
15365840 TATATTATAATT-TAT-T-TAT
1 TTTATTATTATTATATGTATAT
*
15365859 TATTATTATTATTAT-TTTATAT
1 T-TTATTATTATTATATGTATAT
*
15365881 TTTA-T-TTATT-TTTGTATAT
1 TTTATTATTATTATATGTATAT
15365900 TT
1 TT
15365902 ATTTATCTAA
Statistics
Matches: 96, Mismatches: 12, Indels: 35
0.67 0.08 0.24
Matches are distributed among these distances:
16 6 0.06
17 2 0.02
18 4 0.04
19 19 0.20
20 14 0.15
21 10 0.10
22 28 0.29
23 6 0.06
24 7 0.07
ACGTcount: A:0.27, C:0.01, G:0.04, T:0.68
Consensus pattern (22 bp):
TTTATTATTATTATATGTATAT
Found at i:15365841 original size:3 final size:3
Alignment explanation
Indices: 15365833--15365886 Score: 53
Period size: 3 Copynumber: 18.7 Consensus size: 3
15365823 AGTTATATAT
*
15365833 TTA TTA TTA -TA TTA TAA TTTA TTTA TTA TTA TTA TTA TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA
15365878 -TA TT- TTA TT
1 TTA TTA TTA TT
15365887 TATTTTTGTA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
2 8 0.18
3 30 0.68
4 6 0.14
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:15365898 original size:19 final size:18
Alignment explanation
Indices: 15365828--15365907 Score: 68
Period size: 18 Copynumber: 4.7 Consensus size: 18
15365818 TATATAGTTA
*
15365828 TATATTTA-TTATTATAT
1 TATATTTATTTATTATTT
15365845 TATAATTTATTTATTA---
1 TAT-ATTTATTTATTATTT
15365861 T-TA-TTA-TTATTATTT
1 TATATTTATTTATTATTT
15365876 TATATTTTATTTATT-TTT
1 TATA-TTTATTTATTATTT
15365894 GTATATTTATTTAT
1 -TATATTTATTTAT
15365908 CTAATTATAT
Statistics
Matches: 53, Mismatches: 0, Indels: 19
0.74 0.00 0.26
Matches are distributed among these distances:
12 6 0.11
13 3 0.06
14 1 0.02
15 2 0.04
16 3 0.06
17 3 0.06
18 20 0.38
19 15 0.28
ACGTcount: A:0.30, C:0.00, G:0.01, T:0.69
Consensus pattern (18 bp):
TATATTTATTTATTATTT
Found at i:15365932 original size:28 final size:26
Alignment explanation
Indices: 15365899--15365964 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 26
15365889 TTTTTGTATA
*
15365899 TTTATTTATCTAATTATATATCTGTTAT
1 TTTATTTATCT-ATAATATATCT-TTAT
*
15365927 TTTATTTATCCTATAATATATCTTTTT
1 TTTATTTAT-CTATAATATATCTTTAT
15365954 TTTATTTATCT
1 TTTATTTATCT
15365965 GTTCTAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
26 2 0.06
27 12 0.34
28 19 0.54
29 2 0.06
ACGTcount: A:0.26, C:0.09, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTATTTATCTATAATATATCTTTAT
Found at i:15366471 original size:11 final size:11
Alignment explanation
Indices: 15366434--15366472 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
15366424 CCCAGAAACT
*
15366434 GGTGATCTTCC
1 GGTGAACTTCC
*
15366445 GGTCAACTTCC
1 GGTGAACTTCC
15366456 GGTGAACTTCC
1 GGTGAACTTCC
*
15366467 AGTGAA
1 GGTGAA
15366473 ATTTTCTAGA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
11 24 1.00
ACGTcount: A:0.21, C:0.26, G:0.26, T:0.28
Consensus pattern (11 bp):
GGTGAACTTCC
Found at i:15366948 original size:16 final size:16
Alignment explanation
Indices: 15366906--15366967 Score: 63
Period size: 16 Copynumber: 3.6 Consensus size: 16
15366896 TCTTTTCATC
15366906 TTTATTTT-TTTATTTT
1 TTTATTTTCTTTA-TTT
15366922 TGTTGACTTTTCTTTATTT
1 T-TT-A-TTTTCTTTATTT
*
15366941 TTTATTTTATTTATTT
1 TTTATTTTCTTTATTT
15366957 TTTATTATTCT
1 TTTATT-TTCT
15366968 ATTTTCTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 9
0.78 0.04 0.18
Matches are distributed among these distances:
16 18 0.46
17 6 0.15
18 3 0.08
19 8 0.21
20 4 0.10
ACGTcount: A:0.15, C:0.05, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTATTTTCTTTATTT
Found at i:15367068 original size:58 final size:59
Alignment explanation
Indices: 15366993--15367567 Score: 772
Period size: 59 Copynumber: 9.8 Consensus size: 59
15366983 AAATTAAAAC
* * **
15366993 TTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTATAAAT-AAAT
1 TTTC-AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
*** *
15367052 TTTCAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAA-TTTCCTTGGAAATCAAAG
1 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
* *
15367110 TTTCAAAAAAATATTTTTGAGAAAAAGTTGAAAGTATCAATTTTCCTTGCAAATCAAAT
1 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
15367169 TTTCAAAAAAATATTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
1 TTTCAAAAAAATATTTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
* *
15367228 TTTCAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAGAAAT-AAAT
1 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
** *
15367286 TTT-TGAAAAATGGATTTTTGAGGAAAAGTTGAAAGCATCAATTTTCCTTGGAAATCAAAT
1 TTTCAAAAAAAT--ATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
* * * * *
15367346 TTTCAAAAAAAAAATTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-AAAT
1 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
*** *
15367404 TTTCAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAG
1 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
* *
15367463 TTTCAAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTT-AAACAT-AAAT
1 TTTC--AAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAA-ATCAAAT
* *
15367523 TTTC-AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAGTTTTCC
1 TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
15367568 CTACACAAAA
Statistics
Matches: 457, Mismatches: 47, Indels: 26
0.86 0.09 0.05
Matches are distributed among these distances:
57 55 0.12
58 129 0.28
59 209 0.46
60 17 0.04
61 47 0.10
ACGTcount: A:0.44, C:0.08, G:0.13, T:0.35
Consensus pattern (59 bp):
TTTCAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAT
Found at i:15372079 original size:41 final size:40
Alignment explanation
Indices: 15372034--15372371 Score: 482
Period size: 41 Copynumber: 8.2 Consensus size: 40
15372024 ATGATTGTCA
15372034 AGGAGCAATTTACTTTTCAAAGTTCCGT-TGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAG-T-CGTGTGCCTCTGTTTAG
15372075 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAG
15372116 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTC-GTTTAG
1 AGGAGCAATTTAC-TTTTCAAAGTCGT-GTGCCTCTGTTTAG
15372157 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTT-TCAAAGTCGT-GTGCCTCTGTTTAG
*
15372199 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGCTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAG
*
15372240 AGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTTCAAAGTCGT-GTGCCTCTGTTTAG
*
15372281 AGGAGCAATTTACTTTTTCAAAGTTGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTTCAAAGTCGT-GTGCCTCTGTTTAG
* *
15372323 AGGAGCAATTTAGGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTT-TCAAAGTCG-TGTGCCTCTGTTTAG
*
15372366 AAGAGC
1 AGGAGC
15372372 TTTGGTAAAA
Statistics
Matches: 279, Mismatches: 9, Indels: 16
0.92 0.03 0.05
Matches are distributed among these distances:
39 3 0.01
40 4 0.01
41 160 0.57
42 85 0.30
43 26 0.09
44 1 0.00
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.36
Consensus pattern (40 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGTGCCTCTGTTTAG
Found at i:15372187 original size:83 final size:83
Alignment explanation
Indices: 15372034--15372371 Score: 533
Period size: 83 Copynumber: 4.1 Consensus size: 83
15372024 ATGATTGTCA
15372034 AGGAGCAATTTACTTTTCAAAGTTCCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTT-TCAAA
1 AGGAGCAATTTACTTTTCAAAG-T-CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAA
15372096 GTCGTGGTGCCTCTGTTTAG
64 GTCGTGGTGCCTCTGTTTAG
15372116 AGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTC-GTTTAGAGGAGCAATTTACTTTCTCAAAG
1 AGGAGCAATTTAC-TTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAG
15372180 TCGTGGTGCCTCTGTTTAG
65 TCGTGGTGCCTCTGTTTAG
* *
15372199 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGCTTAGAGGAGCAATTTA-TTTTTCAAAGT
1 AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGT
15372263 CGTGGTGCCTCTGTTTAG
66 CGTGGTGCCTCTGTTTAG
* *
15372281 AGGAGCAATTTACTTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTAGGTTTCTCAAA
1 AGGAGCAATTTAC-TTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTTCTCAAA
* *
15372346 GTCGTTGAGCCTCTGTTTAG
64 GTCGTGGTGCCTCTGTTTAG
*
15372366 AAGAGC
1 AGGAGC
15372372 TTTGGTAAAA
Statistics
Matches: 240, Mismatches: 8, Indels: 13
0.92 0.03 0.05
Matches are distributed among these distances:
81 3 0.01
82 98 0.41
83 108 0.45
85 31 0.13
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.36
Consensus pattern (83 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTCTCAAAGT
CGTGGTGCCTCTGTTTAG
Found at i:15372197 original size:124 final size:123
Alignment explanation
Indices: 15372034--15372371 Score: 538
Period size: 124 Copynumber: 2.7 Consensus size: 123
15372024 ATGATTGTCA
15372034 AGGAGCAATTTACTTTTCAAAGTTCCGT--TGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG
1 AGGAGCAATTTACTTTTCAAAG-T-CGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAG
15372097 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTTCAAAGTCGTGGTGCCTC-GTTTAG
64 TCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-TTTTTCAAAGTCGTGGTGCCTCTGTTTAG
15372157 AGGAGCAATTTACTTTCTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
1 AGGAGCAATTTACTTT-TCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGT
*
15372222 CGTGGTGCCTCTGCTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
65 CGTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
* *
15372281 AGGAGCAATTTACTTTTTCAAAGTTGTGGTGCCTCTGTTTAGAGGAGCAATTTAGGTTTCTCAAA
1 AGGAGCAATTTAC-TTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTA-CTTT-TCAAA
* * *
15372346 GTCGTTGAGCCTCTGTTTAGAAGAGC
63 GTCGTGGTGCCTCTGTTTAGAGGAGC
15372372 TTTGGTAAAA
Statistics
Matches: 201, Mismatches: 7, Indels: 11
0.92 0.03 0.05
Matches are distributed among these distances:
122 3 0.01
123 39 0.19
124 126 0.63
125 6 0.03
126 27 0.13
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.36
Consensus pattern (123 bp):
AGGAGCAATTTACTTTTCAAAGTCGTGGTGCCTCTGTTTAGAGGAGCAATTTACTTTTCAAAGTC
GTGGTGCCTCTGTTTAGAGGAGCAATTTATTTTTCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:15372396 original size:11 final size:11
Alignment explanation
Indices: 15372380--15372407 Score: 56
Period size: 11 Copynumber: 2.5 Consensus size: 11
15372370 GCTTTGGTAA
15372380 AAAAAAAAAAC
1 AAAAAAAAAAC
15372391 AAAAAAAAAAC
1 AAAAAAAAAAC
15372402 AAAAAA
1 AAAAAA
15372408 TGACAATGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 17 1.00
ACGTcount: A:0.93, C:0.07, G:0.00, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAC
Found at i:15372694 original size:3 final size:3
Alignment explanation
Indices: 15372686--15372734 Score: 50
Period size: 3 Copynumber: 16.7 Consensus size: 3
15372676 AGTTATATAT
*
15372686 TTA TTA TTA TTA TAA TTTA TTTA TTA TTA TTA TTA TT- TTA -TA TT-
1 TTA TTA TTA TTA TTA -TTA -TTA TTA TTA TTA TTA TTA TTA TTA TTA
15372730 TTA TT
1 TTA TT
15372735 TATTTTTGTA
Statistics
Matches: 40, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
2 6 0.15
3 28 0.70
4 6 0.15
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (3 bp):
TTA
Found at i:15372709 original size:17 final size:17
Alignment explanation
Indices: 15372665--15372767 Score: 69
Period size: 18 Copynumber: 6.2 Consensus size: 17
15372655 TATGTATATG
15372665 TATTT-TTATATAGTTATA
1 TATTTATTAT-TA-TTATA
15372683 TATTTATTATTATTATA
1 TATTTATTATTATTATA
15372700 -ATTTA-T-TTATTAT-
1 TATTTATTATTATTATA
15372713 TA-TTATTATT-TTATA
1 TATTTATTATTATTATA
* *
15372728 T-TTTATTTATTTTTGTA
1 TATTTA-TTATTATTATA
*
15372745 TTTTTATTTATCTAATTATA
1 TATTTA-TTAT-T-ATTATA
15372765 TAT
1 TAT
15372768 CTGTTATTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 20
0.74 0.04 0.21
Matches are distributed among these distances:
13 3 0.04
14 13 0.19
15 7 0.10
16 10 0.14
17 10 0.14
18 16 0.23
19 5 0.07
20 6 0.09
ACGTcount: A:0.30, C:0.01, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTTATTATTATTATA
Found at i:15372729 original size:23 final size:22
Alignment explanation
Indices: 15372683--15372755 Score: 73
Period size: 20 Copynumber: 3.3 Consensus size: 22
15372673 TATAGTTATA
*
15372683 TATTTATTATTATTA-TA-ATT
1 TATTTATTATTATTATTATTTT
15372703 TATTTATTATTATTATTATTTT
1 TATTTATTATTATTATTATTTT
15372725 ATATTTTATTTATT-TT-TGTATTTT
1 -TA-TTTA-TTATTATTAT-TATTTT
15372749 TATTTAT
1 TATTTAT
15372756 CTAATTATAT
Statistics
Matches: 46, Mismatches: 1, Indels: 11
0.79 0.02 0.19
Matches are distributed among these distances:
20 15 0.33
21 3 0.07
22 6 0.13
23 5 0.11
24 12 0.26
25 5 0.11
ACGTcount: A:0.27, C:0.00, G:0.01, T:0.71
Consensus pattern (22 bp):
TATTTATTATTATTATTATTTT
Found at i:15372784 original size:28 final size:26
Alignment explanation
Indices: 15372746--15372812 Score: 89
Period size: 28 Copynumber: 2.5 Consensus size: 26
15372736 ATTTTTGTAT
*
15372746 TTTTATTTATCTAATTATATATCTGTTA
1 TTTTATTTATCT-ATAATATATCT-TTA
*
15372774 TTTTATTTATCCTATAATATATCTTTT
1 TTTTATTTAT-CTATAATATATCTTTA
15372801 TTTTATTTATCT
1 TTTTATTTATCT
15372813 GTTCTAATTA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
26 2 0.06
27 12 0.33
28 20 0.56
29 2 0.06
ACGTcount: A:0.25, C:0.09, G:0.01, T:0.64
Consensus pattern (26 bp):
TTTTATTTATCTATAATATATCTTTA
Found at i:15373410 original size:15 final size:16
Alignment explanation
Indices: 15373384--15373417 Score: 52
Period size: 15 Copynumber: 2.2 Consensus size: 16
15373374 AACTTTTAGA
15373384 GAGAAGGAGAGGAAAG
1 GAGAAGGAGAGGAAAG
*
15373400 GAGAA-GAGAGGAAGG
1 GAGAAGGAGAGGAAAG
15373415 GAG
1 GAG
15373418 TGTTCTGCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 12 0.71
16 5 0.29
ACGTcount: A:0.47, C:0.00, G:0.53, T:0.00
Consensus pattern (16 bp):
GAGAAGGAGAGGAAAG
Found at i:15373674 original size:12 final size:11
Alignment explanation
Indices: 15373657--15373789 Score: 72
Period size: 12 Copynumber: 11.2 Consensus size: 11
15373647 CCGCTCCAAG
15373657 TTTTTTTTTTCA
1 TTTTTTTTTT-A
15373669 TTTTTTTGTTTA
1 TTTTTTT-TTTA
15373681 TTTGTTTTTTTA
1 TTT-TTTTTTTA
*
15373693 TTTTTTATTTAGA
1 TTTTTT-TTT-TA
15373706 TTATTTTTATTTAA
1 TT-TTTTT-TTT-A
* * *
15373720 TATTCTTTTCA
1 TTTTTTTTTTA
15373731 TCTTTATTTTTT-
1 T-TTT-TTTTTTA
* *
15373743 TTTTTACTTTTC
1 TTTTT-TTTTTA
15373755 TTTATTTTTTTA
1 TTT-TTTTTTTA
*
15373767 -TTTTTATTTA
1 TTTTTTTTTTA
*
15373777 TTTTTTTATTA
1 TTTTTTTTTTA
15373788 TT
1 TT
15373790 CTATTTTCTT
Statistics
Matches: 94, Mismatches: 14, Indels: 27
0.70 0.10 0.20
Matches are distributed among these distances:
10 8 0.09
11 24 0.26
12 33 0.35
13 21 0.22
14 8 0.09
ACGTcount: A:0.15, C:0.05, G:0.02, T:0.78
Consensus pattern (11 bp):
TTTTTTTTTTA
Found at i:15373758 original size:10 final size:8
Alignment explanation
Indices: 15373737--15373801 Score: 60
Period size: 9 Copynumber: 7.6 Consensus size: 8
15373727 TTCATCTTTA
15373737 TTTT-TTT
1 TTTTATTT
15373744 TTTTACTTT
1 TTTTA-TTT
15373753 TCTTTATTT
1 T-TTTATTT
15373762 TTTTATTTT
1 TTTTA-TTT
15373771 TATTTATTT
1 T-TTTATTT
*
15373780 TTTTATTA
1 TTTTATTT
*
15373788 TTCTATTT
1 TTTTATTT
15373796 TCTTTA
1 T-TTTA
15373802 AATGAAAATC
Statistics
Matches: 48, Mismatches: 4, Indels: 10
0.77 0.06 0.16
Matches are distributed among these distances:
7 4 0.08
8 17 0.35
9 19 0.40
10 8 0.17
ACGTcount: A:0.14, C:0.06, G:0.00, T:0.80
Consensus pattern (8 bp):
TTTTATTT
Found at i:15373781 original size:28 final size:32
Alignment explanation
Indices: 15373706--15373781 Score: 83
Period size: 28 Copynumber: 2.6 Consensus size: 32
15373696 TTTATTTAGA
*
15373706 TTATTTTTATTTAATATTCTTTTCATCTTTAT
1 TTATTTTTATTTAATTTTCTTTTCATCTTTAT
*
15373738 TT-TTTTT-TTTACTTTTC-TTT-AT-TTT-T
1 TTATTTTTATTTAATTTTCTTTTCATCTTTAT
*
15373764 TTATTTTTATTTATTTTT
1 TTATTTTTATTTAATTTT
15373782 TTATTATTCT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
26 3 0.08
27 8 0.21
28 10 0.26
29 3 0.08
30 8 0.21
31 5 0.13
32 2 0.05
ACGTcount: A:0.16, C:0.07, G:0.00, T:0.78
Consensus pattern (32 bp):
TTATTTTTATTTAATTTTCTTTTCATCTTTAT
Found at i:15373786 original size:18 final size:18
Alignment explanation
Indices: 15373677--15373786 Score: 91
Period size: 18 Copynumber: 6.0 Consensus size: 18
15373667 CATTTTTTTG
*
15373677 TTTATTTGTTTTTTTATTT
1 TTTATTTATTTTTTTA-TT
15373696 TTTATTTAGATTATTTTTA--
1 TTTATTT--ATT-TTTTTATT
* * *
15373715 TTTA-ATATTCTTTTCATC
1 TTTATTTATT-TTTTTATT
* *
15373733 TTTATTTTTTTTTTTACT
1 TTTATTTATTTTTTTATT
*
15373751 TTTCTTTATTTTTTTATT
1 TTTATTTATTTTTTTATT
15373769 TTTATTTATTTTTTTATT
1 TTTATTTATTTTTTTATT
15373787 ATTCTATTTT
Statistics
Matches: 72, Mismatches: 13, Indels: 13
0.73 0.13 0.13
Matches are distributed among these distances:
16 8 0.11
18 42 0.58
19 14 0.19
21 2 0.03
22 6 0.08
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (18 bp):
TTTATTTATTTTTTTATT
Found at i:15373796 original size:26 final size:28
Alignment explanation
Indices: 15373739--15373796 Score: 75
Period size: 26 Copynumber: 2.1 Consensus size: 28
15373729 CATCTTTATT
* * *
15373739 TTTTTTTTTACTTTTCTTTATTTTTTTA
1 TTTTTATTTACTTTTCTTTATTATTCTA
15373767 TTTTTATTTA-TTTT-TTTATTATTCTA
1 TTTTTATTTACTTTTCTTTATTATTCTA
15373793 TTTT
1 TTTT
15373797 CTTTAAATGA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 14 0.52
27 4 0.15
28 9 0.33
ACGTcount: A:0.14, C:0.05, G:0.00, T:0.81
Consensus pattern (28 bp):
TTTTTATTTACTTTTCTTTATTATTCTA
Found at i:15373884 original size:60 final size:60
Alignment explanation
Indices: 15373807--15374278 Score: 620
Period size: 60 Copynumber: 7.9 Consensus size: 60
15373797 CTTTAAATGA
* * *
15373807 AAATCAAAACTTTCAAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAG
1 AAATC-AAATTTTC-AAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTGG
*** *
15373869 AAAT-AAATTTTC-AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTGG
* *
15373927 AAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTGG
15373987 AAATCAAATTTTCAAAAAAAATATTTTT-AGGGAAAAGTT-AAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGA-GGAAAAGTTGAAAA-TATCAATTTTCCTTGG
* * *
15374047 AAATCAAATTTTCAAAAAATATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTGG
*** *
15374107 AAAT-AAATTTTC-AAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTGG
** * * **
15374165 AAATCAAAGTTTAAAAAAAAAATATTTTTGAGTAAAAGTTGAAAATACCAATTTTCCTTAA
1 AAATCAAA-TTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTGG
* *
15374226 AAAT-AAATTTTC--AAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCC
15374279 CTACACAAAA
Statistics
Matches: 364, Mismatches: 37, Indels: 23
0.86 0.09 0.05
Matches are distributed among these distances:
57 37 0.10
58 88 0.24
59 25 0.07
60 163 0.45
61 47 0.13
62 4 0.01
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (60 bp):
AAATCAAATTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAATATCAATTTTCCTTGG
Found at i:15373936 original size:32 final size:32
Alignment explanation
Indices: 15373900--15373994 Score: 78
Period size: 32 Copynumber: 3.1 Consensus size: 32
15373890 TTTTTGAGGA
15373900 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
1 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
* ** *
15373932 AAAGTTTCAAA--AAAAATATTT--TT-GAGGA--
1 AAAG-TTGAAAGTATCAAT-TTTCCTTGGA-AATC
15373960 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
1 AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
15373992 AAA
1 AAA
15373995 TTTTCAAAAA
Statistics
Matches: 45, Mismatches: 8, Indels: 20
0.62 0.11 0.27
Matches are distributed among these distances:
27 5 0.11
28 7 0.16
29 6 0.13
30 6 0.13
31 6 0.13
32 10 0.22
33 5 0.11
ACGTcount: A:0.43, C:0.09, G:0.15, T:0.33
Consensus pattern (32 bp):
AAAGTTGAAAGTATCAATTTTCCTTGGAAATC
Found at i:15373960 original size:118 final size:117
Alignment explanation
Indices: 15373807--15374278 Score: 710
Period size: 118 Copynumber: 4.0 Consensus size: 117
15373797 CTTTAAATGA
*
15373807 AAATCAAAACTTTCAAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAA
1 AAATC-AAAGTTTC-AAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAA
*
15373872 TAAATTTTCAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
64 TAAATTTTCAAAAA-AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
* * *
15373927 AAATCAAAGTTTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATC
1 AAATCAAAGTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT-
* * *
15373992 AAATTTTCAAAAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCCTTGG
65 AAATTTTCAAAAAAGAT-TTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGG
* *
15374047 AAATCAAATTTTCAAAAAATATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATA
1 AAATCAAAGTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATA
*
15374112 AATTTTCAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
66 AATTTTCAAAAA-AGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
* * * * *
15374165 AAATCAAAGTTTAAAAAAAAAATATTTTTGAGTAAAAGTTGAAAATACCAATTTTCCTTAAAAAT
1 AAATCAAAGTTT-CAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAAT
* *
15374230 AAATTTTCAAAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
65 AAATTTTCAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
15374279 CTACACAAAA
Statistics
Matches: 320, Mismatches: 27, Indels: 12
0.89 0.08 0.03
Matches are distributed among these distances:
118 123 0.38
119 102 0.32
120 95 0.30
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (117 bp):
AAATCAAAGTTTCAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAATA
AATTTTCAAAAAAGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGG
Found at i:15374236 original size:238 final size:238
Alignment explanation
Indices: 15373807--15374278 Score: 806
Period size: 238 Copynumber: 2.0 Consensus size: 238
15373797 CTTTAAATGA
15373807 AAATCAAAACTTTCAAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAA
1 AAATCAAAACTTTCAAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAA
15373872 TAAATTTTCAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGT
66 TAAATTTTCAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGT
* * * **
15373937 TTCAAAAAAAATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAATTTTCAA
131 TTAAAAAAAAATATTTTTGAGGAAAAGTTGAAAATACCAATTTTCCTTAAAAATCAAATTTTC--
15374002 AAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCCTTGG
194 AAAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCCTTGG
* *
15374047 AAATC-AAATTTTC-AAAAAATATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAA
1 AAATCAAAACTTTCAAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAA
15374110 TAAATTTTCAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGT
66 TAAATTTTCAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGT
*
15374175 TTAAAAAAAAAATATTTTTGAGTAAAAGTTGAAAATACCAATTTTCCTTAAAAAT-AAATTTTCA
131 TT-AAAAAAAAATATTTTTGAGGAAAAGTTGAAAATACCAATTTTCCTTAAAAATCAAATTTTCA
* *
15374239 AAAAATATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
195 AAAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCC
15374279 CTACACAAAA
Statistics
Matches: 221, Mismatches: 10, Indels: 6
0.93 0.04 0.03
Matches are distributed among these distances:
236 39 0.18
238 124 0.56
239 53 0.24
240 5 0.02
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (238 bp):
AAATCAAAACTTTCAAAAAAAAATATTTTTAAGGAAAAGTTGAAAATATCAATTTTCCTTAGAAA
TAAATTTTCAAAAAGGGATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGGAAATCAAAGT
TTAAAAAAAAATATTTTTGAGGAAAAGTTGAAAATACCAATTTTCCTTAAAAATCAAATTTTCAA
AAAATATTTTTAGGGAAAAGTTAAAAGTATCAATTTTCCTTGG
Found at i:15375374 original size:26 final size:26
Alignment explanation
Indices: 15375338--15375390 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15375328 CTAGTCCGAT
*
15375338 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15375364 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15375390 C
1 C
15375391 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15376263 original size:26 final size:26
Alignment explanation
Indices: 15376234--15376286 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15376224 CCAATCTGAT
*
15376234 CTTAGACTAGGAATGAACTCTGTATG
1 CTTAGACGAGGAATGAACTCTGTATG
*
15376260 CTTAGACGGGGAATGAACTCTGTATG
1 CTTAGACGAGGAATGAACTCTGTATG
15376286 C
1 C
15376287 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACGAGGAATGAACTCTGTATG
Found at i:15376749 original size:899 final size:896
Alignment explanation
Indices: 15374752--15379937 Score: 6060
Period size: 895 Copynumber: 5.7 Consensus size: 896
15374742 ATATTATGAC
* * *
15374752 AGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGTCTTATAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * **
15374817 CCTTAAGCCTTCAAGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTCAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAA
* * *
15374882 ACCTTTTACGATTTAGGATTTTTTAAAATTGTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAG
131 ACTTTTTACGGTTCAGGATTTTTTAAAATT-TTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
15374946 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTATACAAT
195 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* ** * * * * * *
15375011 ATTTTATGACCAACTGAAAAAATTATCCCTATTTCAGACACTTTAACGGCCACTAGCAGCAAACC
260 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * *
15375076 AGTAAAATCTCAAATGCTCTTTAAGGAGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCC
325 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
*
15375141 AATATAAGGGCCAAGTACCAGCACCCACCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
390 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* * * * *
15375206 CGCCTGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGTCGAA
455 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGG-TATGCTCCGGCGATGGTGCCCCGACGAA
* ** * * * * * * *
15375271 GAAAAATGCGACACCAATACATGCCCAAGCCTAGCATGTGCAGGCGCAACCCTTGGTCTAGTCCG
519 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCTG
* *
15375336 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC
584 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAAC
* * *
15375401 CCACGAAATGAGCGTGCAGGCGCTCAGCCAGCCAGA-GGGTCAGGATGCGCAAGCCGGGGATCGG
649 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGT-AGGATGCGCAAGCCGGGGATCGG
** * * *
15375465 -CAGGGTCCCCCTCTACGTG--CTG---------CCGTAACCCTCGATCCAGTTTGATCTTAGAC
713 TC-GGGTCCCCCTCTGTGTGCTCTGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGAC
* * * * *
15375518 TGGGAACGAACTCCGTATGCCTAACCCAATCGACAAAATGAGCGGGCTGGAGGGCGGACGGGCGG
777 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC------G-GG-CGGGCGG
*
15375583 GCACTACGCTGGCCAGAGGGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
834 GCACTACGC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
15375647 AGGCACATCTTCATATTTCTGCAAGCCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
15375712 CCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAA
* * *
15375777 ACTTTTTGA-GGTTCAGGATTTTTTAAAATTTCTTCGAAAGGAGTTTTGGCCCCAAACTTGGCAG
131 ACTTTTT-ACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
15375841 ACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAACA-TCAACTAAAAACTCGAAGCGTGCAA
195 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAA
*
15375905 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTGAATGGCTACTGGCAGCAAAC
259 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
15375970 ATGTAAAATCTCAAATGCTCTTTAAGGGGGTGCGA-TTCCTTGAGGTTTGATGAGGGATAGGGGG
324 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT-CTCGAGGTTTGATGAGGGATAGGGGG
* * *
15376034 CCAATATAAGGGACAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCTC
388 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCC
* * * * * *
15376099 GATCGTCGGAACCCCAATACTGCCGGTCAGGTTCTCCAGTATTGCTCTGGCAATGGTGCCCCAAC
452 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTA-TGCTCCGGCGATGGTGCCCCGAC
* * * *
15376164 GAAGAAAAAAGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCAAT
516 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGT
* * *
15376229 CTGATCTTAGACTAGGAATGAACTCTGTATGCTTAGACGGGGAATGAACTCTGTATGCCTAAGTC
581 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTC
* * * * * * *
15376294 AACGCATGAAACGAGCGTGCGGGCACTCAACCGGCCAGAGGGGTAGGATGCACAAGTCGGGGATT
646 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATC
* * * * *
15376359 GGTCGGGTCCCCCTCTATGTGTTACTGATCCTACTACCGCAACCCT-TATATCGGTCTAATCTTA
711 GGTCGGGTCCCCCTCTGTGTGCT-CTGATCCTACTACCGCAACCCTCGAT-CCGGTCTGATCTTA
* * * **
15376423 GACTGGGAATGAACTCCGTATACCTAGGCCAACCAACGAAACGAGCGGGCGGGCGGGTAGGCACT
774 GACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACT
* * * * * * * * *
15376488 ATGCCGCCAAAGAGACGGGCTACGTAAGTCGTGGAACGATAAGGTGGTAGGTGGGTTT
839 ACGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
15376546 AGGCACATCTTTATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
15376611 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTTTATTTTTCATGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAA
* * *
15376676 ACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGA
131 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * *
15376741 TGTGATCCTTGTACTTTTTTTGGCACGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGA
196 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
15376806 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGAAACTTTAATGGCTACAGGCAGCAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
15376871 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCCAGGTTTGATGAGGGATAGGGGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
15376936 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGT--GCACACCCCCCGGCCCCCCCGATC
391 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* * * *
15376999 GTCGGAACCCGAATGCCGTCGGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCCAACGAAG
456 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGT-ATGCTCCGGCGATGGTGCCCCGACGAAG
** * * * *
15377064 AAAAATATGGTACCAACACATGCCCGAGCCCAGCATGTGCTATTGCAACCCT---T---G---G-
520 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCTGA
* * * *
15377119 --TT---C---G-AT----T-TG-AT-CTTAGACTAGGAATGAACTCCGTATGCTTAAGTCAACC
585 TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
* ** * *
15377168 CACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCGATC
650 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTC
* * * * * * * *
15377233 GGGTCACCCTCTGCGTGCTACCGATCCAACTGCCGCAACCCTCGGTTCGGTCTGATCTTAGATTG
715 GGGTCCCCCTCTGTGTGCT-CTGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGACTG
* * * * * *
15377298 GGAATTAACTCAGTATGCCTAAGCCAACAGATGAAACGTGCGGGCGAAGGGGCGGGTGGGCACTA
779 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----GGGCGGGCGGGCACTA
15377363 CGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
840 CG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
15377421 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGTCTTGTAGATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
** * *
15377486 CCTTAAGCCTTCACGTGAAAATTCATGGCAAGATGACTCATTTTCTATTTTTCATGATTTTTAAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAA
** * * * *
15377551 ACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAGGATTTTTGCCCCCAAACTTGGTAGA
131 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * *
15377616 CGTGATCCTTTTATTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGA
196 CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * * *
15377681 TTTTGTAACCATTTTAAAAAGGTGTCCCAATTTCAAACACTTTAATGGCTACTGGCAGCAAACCT
261 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
* ** * *
15377746 GTAAAATCTCAAATGCTCATTAAGGGGCCGTGAGTTTTTGAGGTTTGATGAGGGATAGGGGGCCA
326 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
* * * * *
15377811 ATATAAGGGCCAAGTACCAGCACCCATCGCATATAATGTGAGCACACCCCCCGACCCCCTCGATC
391 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
**
15377876 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCGGTGAAG
456 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGT-ATGCTCCGGCGATGGTGCCCCGACGAAG
* * * **
15377941 AAAAATGCGTCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGCAACCCTGGGTCTGGT-TCG
520 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCT-G
* * *
15378005 ATCTTCGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGG
584 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTA-A----G
* * * * * * * **
15378070 AATGAACTCCGTATGCTTAGATTAGGAATGAAC-TCCGTATGC-CTAAGTCAACACATGAAACGA
644 --TCAAC-CC--A--C---G---A--AACGAGCGTGCG--GGCGCTCAGCCGGC-CA-G--A-G-
* ** * * ** ** * *
15378133 GCGTGTGGGCATTCAGTCGGCTAGAGGGGTGGGATGCGTAAGCCATGG-ATCGGTC-GGGTCCTC
686 G-G-GTAGG-A-T--G-C-GC-A-AGCCG-GGGAT-CG---GTC-GGGTCCCCCTCTGTGT--G-
* * * * * *
15378196 CTCTGTTTGCTGTTGATCTTGCTACCACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAA
732 --C----T-C---TGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATGAA
* * * * *
15378261 CTCCGTATGCCTAAGCCAGCCGATGAAACGAGCGGGTGGGC-GGCGGGCAATACGTTGGCCAGAG
787 CTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACG-CGGCCAGAG
** *
15378325 AGAATGGATGCGCAAGCCGTGGATCGATAGGTTGGTAGGTGGGTTT
851 AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
15378371 ATGCACATCTTCATATTTCTACTTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * *
15378436 CCATGAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAA
* * ** * *
15378501 ACATTTTATGGTTTGGGATTTTTTAAAATTTTTTCAGCAA-GAGTTTTAGCCCCAAACTTGGTAG
131 ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-GGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * * * *
15378565 ACGTCATCCTTGTAGTTTTGTTT-GCTTGCACAAAAAAATTCAGCTAAAAAGTCAAAATGTACAA
195 ACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
15378629 GATTTTGTGACCATTTGAAAAAACTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
259 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
15378694 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
324 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
15378759 CACTATAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGTGCACACCCCCCCCGGCCCCCCC
389 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCC
* ** * * * *
15378824 GATCGTCGGAACCCCAATGCCGTCC-GTCAGGTTTTCCGACAATGCTCCGGTGATAGTACCTCGA
452 GATCGTCGGAACCCCAATGCCG-CCGGTCAGGTTCTCCG-GTATGCTCCGGCGATGGTGCCCCGA
* * * *
15378888 CAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCTAGCATGTTCTG-CTGCAACCCTCTGTCCA
515 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTC-GCAACCCTCGGTCCA
* * * * *
15378952 TTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTAGGAATAAACT-TCGTATGCCTAA
579 GTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCT-GTATGCCTAA
* * * *
15379016 GTCAACCCACGAAACGAGCGTGCGGGCGCTCCGCAGGCCAGAGGGG-CGAGATGCGCAAGCCGAG
643 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAG-GATGCGCAAGCCGGG
* * * * ** **
15379080 GATCGGTCGGGTCCCCCTCTGTGAGCTGTCGATCTTGCTACCATAACCCTC-AGTCCGGTCCAAT
707 GATCGGTCGGGTCCCCCTCTGTGTGCTCT-GATCCTACTACCGCAACCCTCGA-TCCGGTCTGAT
* * * *
15379144 CTTAGACTGGGAAAGAACTTCGTATGCCTAAGCCAACCGACCAAATGAGCGGGCGGGCGGGCGGG
770 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGG
* ** *
15379209 CACTATGCCAACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTCGGTGGGTTT
835 CACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
15379272 AGGCATATCTTCATATTTCTGCCTCCCAATGCCATTTTTATGGCTTGTAAATTCATTCAATGGTC
1 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
15379337 CCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAA
66 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAA
* * * *
15379402 A-TGTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGATGGAGTTTTGGTCACAAAC-T--TAG
131 ACT-TTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
15379463 GCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCAAAAAACTCAAAGTGTACAAC
195 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* * *
15379528 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACAGGCAGCAAACT
260 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
15379593 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGACC
325 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
**
15379658 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GAACCCCCGAT
390 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* *
15379722 CGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACG-ATGCTCCGGCGATGGTGCCCTGACGA
455 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG--GTATGCTCCGGCGATGGTGCCCCGACGA
* * * *
15379786 AGAAAAATGCGACACCAGCACATGCCTGAGCCCAGCATGTGCTGTCACAACCGTCGG-CCTAGTC
518 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCC-AGTC
*
15379850 TGATCTTAG-CTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
582 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCA
15379914 ACCCACGAAACGAGCGTGCGGGCG
647 ACCCACGAAACGAGCGTGCGGGCG
15379938 GGCGGGCACT
Statistics
Matches: 3665, Mismatches: 486, Indels: 281
0.83 0.11 0.06
Matches are distributed among these distances:
870 176 0.05
871 3 0.00
872 2 0.00
873 1 0.00
874 16 0.00
875 435 0.12
877 127 0.03
878 1 0.00
880 1 0.00
881 1 0.00
883 1 0.00
884 2 0.00
886 1 0.00
887 1 0.00
889 2 0.00
892 1 0.00
893 1 0.00
894 83 0.02
895 509 0.14
896 367 0.10
897 23 0.01
898 222 0.06
899 442 0.12
900 99 0.03
901 224 0.06
902 3 0.00
903 29 0.01
904 1 0.00
907 3 0.00
908 62 0.02
910 6 0.00
911 7 0.00
912 2 0.00
913 1 0.00
914 2 0.00
915 5 0.00
916 3 0.00
917 1 0.00
918 3 0.00
919 1 0.00
920 1 0.00
921 1 0.00
922 4 0.00
923 12 0.00
924 6 0.00
925 2 0.00
926 1 0.00
927 2 0.00
928 2 0.00
929 1 0.00
930 2 0.00
931 8 0.00
932 10 0.00
933 4 0.00
934 1 0.00
935 1 0.00
936 1 0.00
937 2 0.00
938 1 0.00
939 3 0.00
940 6 0.00
941 2 0.00
942 1 0.00
943 3 0.00
944 6 0.00
945 6 0.00
947 1 0.00
948 1 0.00
950 442 0.12
951 16 0.00
952 171 0.05
953 2 0.00
955 73 0.02
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (896 bp):
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTTGAA
ACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGTATGCTCCGGCGATGGTGCCCCGACGAAGA
AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTCTGAT
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTAGGATGCGCAAGCCGGGGATCGGTCG
GGTCCCCCTCTGTGTGCTCTGATCCTACTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGG
AATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCACTACGCGGC
CAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
Found at i:15378047 original size:26 final size:26
Alignment explanation
Indices: 15378011--15378111 Score: 166
Period size: 26 Copynumber: 3.9 Consensus size: 26
15378001 TTCGATCTTC
*
15378011 GACTGGGAATGAACTCCATATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
*
15378037 GACTGGGAATGAACTCTGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
15378063 GACTGGGAATGAACTCCGTATGCTTA
1 GACTGGGAATGAACTCCGTATGCTTA
* *
15378089 GATTAGGAATGAACTCCGTATGC
1 GACTGGGAATGAACTCCGTATGC
15378112 CTAAGTCAAC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 70 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
GACTGGGAATGAACTCCGTATGCTTA
Found at i:15378997 original size:26 final size:26
Alignment explanation
Indices: 15378959--15379011 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15378949 CCATTCCGAT
* *
15378959 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTAGGAATAAACTTC-GTATG
15378985 CTTAGACTAGGAATAAACTTCGTATG
1 CTTAGACTAGGAATAAACTTCGTATG
15379011 C
1 C
15379012 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTAGGAATAAACTTCGTATG
Found at i:15379889 original size:26 final size:25
Alignment explanation
Indices: 15379854--15379905 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 25
15379844 CTAGTCTGAT
15379854 CTTAGCTGGGAATGAACTCCGTATG
1 CTTAGCTGGGAATGAACTCCGTATG
15379879 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAG-CTGGGAATGAACTCCGTATG
15379905 C
1 C
15379906 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 5 0.19
26 21 0.81
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (25 bp):
CTTAGCTGGGAATGAACTCCGTATG
Found at i:15380513 original size:14 final size:14
Alignment explanation
Indices: 15380494--15380520 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
15380484 GATGCTCCGA
15380494 CGATGGTGCCCCGG
1 CGATGGTGCCCCGG
15380508 CGATGGTGCCCCG
1 CGATGGTGCCCCG
15380521 ACGAAGAAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.37, G:0.41, T:0.15
Consensus pattern (14 bp):
CGATGGTGCCCCGG
Found at i:15380623 original size:26 final size:26
Alignment explanation
Indices: 15380586--15380645 Score: 88
Period size: 26 Copynumber: 2.4 Consensus size: 26
15380576 CCTCGATCTG
15380586 ATCCA-AT-CTTAGACTGGGAATGAA
1 ATCCATATGCTTAGACTGGGAATGAA
15380610 ATCCATATGCTTAGACTGGGAATGAA
1 ATCCATATGCTTAGACTGGGAATGAA
* *
15380636 CTCCGTATGC
1 ATCCATATGC
15380646 CTGAGTCAAC
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
24 5 0.16
25 2 0.06
26 25 0.78
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
ATCCATATGCTTAGACTGGGAATGAA
Found at i:15383445 original size:26 final size:26
Alignment explanation
Indices: 15383409--15383461 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15383399 TCGGTTCGAT
15383409 CTTAGACTGGGAATGAA-TTCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
15383435 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15383461 C
1 C
15383462 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 23 0.88
27 3 0.12
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15384341 original size:26 final size:26
Alignment explanation
Indices: 15384312--15384390 Score: 97
Period size: 26 Copynumber: 3.0 Consensus size: 26
15384302 CTGGTCCGAT
15384312 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*** *
15384338 CTTAGACTTAAAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15384364 CTTAAACTGGGAATGAACGT-CGTATG
1 CTTAGACTGGGAATGAAC-TCCGTATG
15384390 C
1 C
15384391 CTAAGTCAAC
Statistics
Matches: 43, Mismatches: 9, Indels: 2
0.80 0.17 0.04
Matches are distributed among these distances:
26 42 0.98
27 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.23, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15386163 original size:26 final size:26
Alignment explanation
Indices: 15386113--15386165 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15386103 CCGGTCTGAT
**
15386113 CTTAGACTGGGAATGAACTTTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
15386139 CTTAGA-TCGGGAATGAACTCAGTATG
1 CTTAGACT-GGGAATGAACTCAGTATG
15386165 C
1 C
15386166 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 1 0.04
26 23 0.96
ACGTcount: A:0.28, C:0.15, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:15387053 original size:26 final size:26
Alignment explanation
Indices: 15387017--15387069 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15387007 CAAGTCTGAT
*
15387017 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15387043 CTTAGACTGGGAATGAAGTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15387069 C
1 C
15387070 CTAAGTTAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15387806 original size:912 final size:902
Alignment explanation
Indices: 15382766--15398910 Score: 11519
Period size: 890 Copynumber: 17.7 Consensus size: 902
15382756 CAGGAGTTCA
* *
15382766 GCCGGCCAGAGAGACGGGATG-GCCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTCAGGCACA
1 GCCGGCCAGAGAGACGGGATGCG-CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
15382830 TCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
65 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * * * ** *
15382895 CCTGCACATGAAGTTTCATGGCAAGACGCCTCATTTTCTATTTTTCATGATTTTTGAAAAATTTC
130 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * * *
15382960 ATAGTTCGAGATTTTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGAT
195 GTGGTTCGGGATTTTTT-AAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* *
15383024 CCTTTTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGA
259 CCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
15383088 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
324 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* * *
15383153 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATCTAA
389 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
15383218 AGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACACCCCTCCGGCCCCCCTGATCGCCGG
454 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCGGCCCCCC-GATCGCCGG
* * * * * **
15383283 AACCCCAATGTCGTCGGTCAGGTTCTTCGACGATGCTCTGACGATGGTGCCCTGGTGAAGAAAAA
517 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * *
15383348 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTTCGGTTCGATCTTA
582 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* *
15383413 GACTGGGAATGAA-TTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCATG
647 GACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * * * *
15383477 AAACGAGCGTGTGGGCACTCAGCCGGCCGACCAGAGGGGCGGGATGTGCAAGTCAGGGTTC-AGC
711 AAACGAGCGTGCGGGCGCTCAGCC-G--G-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-T
* * * * * * * * *
15383541 CGGTTCCCCCTCTAT-GTGCTGTCGATCTTACTACCACAACCCTCAGTCCGGTCCGATCTTAAAC
771 CGGGTCCCCTTCT-TCATGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGAC
* * *
15383605 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTG-AGTGGGCGGGCGAGCGGGCA
835 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGCAGCGGGCGGGCGGGCGGGCA
15383669 CTAC
899 CTAC
* * *
15383673 GCCGGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
15383738 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
15383803 CTTCACGTGAAGTTTCATGGCAAGACAACTGGTTTTCTTTTTTTCACGATTTTTAAAACTTTTTG
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* ** *
15383868 TGATTTC-AAATTTTTTAAAATTTTTTC-GAAAG-GATTATTGGCCCCAAACTTGGTAGAAGTGA
196 TG-GTTCGGGATTTTTTAAAATTTTTTCGGAAAGAG-TT-TTGGCCCCAAACTTGGTAGACGTGA
* *
15383930 TCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
258 TCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
15383995 TGACCATTTGAAAAAAGTGTCCCCATCTCAGACACTTT-ATGGCTACTGGCAGCAAACCTGTAAG
323 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
15384059 ATCTTAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGAGGCCAATATA
388 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* **
15384124 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCTATCATCGGA
453 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGA
* * * *
15384188 ACCCTAATCCCGCCGGTCAGGTTCTCCGACGATGCT-CTAGCGATGGTG-CCCGGCGAAGAAAAA
518 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAA
* * * * *
15384251 TGCAGCACCAGCACATGCCCGAGCCCACCATGTGCTGCCACAACCCTCGGTCTGGTCCGATCTTA
582 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
15384316 GACTGGGAATGAACTCCGTATGCTTAGACTTAAAATGAACTCTGTATGCTTAAACTGGGAATGAA
647 GACTGGGAATGAA---C-T-T-C---G---T---ATG----CT-TA-G-----ACTGGGAATGAA
* * *
15384381 CGT-CGTATGCCTAAGTCAACCCACGAAAC-ATGCGTGCGAGAGCTCAACCGGCCAGAGGGGC-G
686 C-TCCGTATGCCTAAGTCAACCCACGAAACGA-GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * *
15384443 GATGCACAAG-CGGGGATCGACCGGGTCCCCCCTCTACGTGCTACCCATCCTGCTGCCACAACCC
749 GATGCGCAAGCCGGGGATCGATCGGGT-CCCCTTCTTCATGCTGCCGATCCTGCTGCCACAACCC
* * * * *
15384507 TCAGTCTGGTCTAATCTTAGACT-GGAATGACCTCCGTATG-CGAAGCCAACTGACGAAATGAGC
813 TCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGC
*
15384570 GC-GC-GGCGGGC-GGTGGGCAC-AC
877 GCAGCGGGCGGGCGGGCGGGCACTAC
* * *
15384592 GCCGACAAGAGAGAC-GG-TGCGCAAGCCGTGGATTGATAGGG-GTGTAGGTGGGTTTAGGCACA
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG-GTAGGTGGGTTTAGGCACA
* *
15384654 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAG
65 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
15384719 CCTTCACGTGCAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTCT
130 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* ** * * *
15384784 GCGGTTCAAGATTTTTTAAAATTTTTT-GGAAGGATTTTTGGCCCCAAACTTGGTTGACGTGATC
195 GTGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
15384848 CTTGTATTTTTGTTGGGATGCAAAAAAAAAATTCAGCTAAAAAC-CTGAAGTGTACAAGATTTTG
260 CTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTC-GAAGTGTACAAGATTTTG
* * * * * *
15384912 TGACCATTTGAAAAAAATGTCCTCATTTCGGAGACTTTAATGGCTACTGGTAGCAAACCTGTGAA
323 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
15384977 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTAATGAGGGATAGGGGGTCCAATAT
388 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG-CCAATAT
* * * * *
15385042 GAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACACCCCCTGGCACCCCAGATCACCG
452 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC-CCCCCGATCGCCG
* * * *
15385107 GAACCCCAATGTCGCCGGTCA---------A-G-TTCTCCGACGATGGTGCCCTGACGAACAAAA
516 GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
* * *
15385161 ATACGGCACCAGCACATGCACGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTGGTCCGATCTT
581 ATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTT
* * *
15385226 CGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTACGTATGCCTAAGTCAACCCACG
646 AGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * *
15385291 AAACAAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGGATCGGTCGGGT
711 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT
* * * * * ** * * * *
15385356 CCCCTTCTAT-GTGCTGCCGATCCTACTGTCGCAACCCTAAGTTTGAT-CGATCTTAGACTAGAA
776 CCCCTTCT-TCATGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGA
* * * * *
15385419 ATGAACTCCGTATGCCTAAGCCAATCGATGAAATA----AGC-GGCTAGGCGGGCGGGCACTAT
840 ATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGCAGCGGGC-GGGCGGGCGGGCACTAC
* * *
15385478 ACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTAAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
15385543 CTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGATCCCTTAAGG
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
15385608 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTTA
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* * * * *
15385673 CGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTGCGCCCCAAACTTGGTAGACATTATC
196 TGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTG-GCCCCAAACTTGGTAGACGTGATC
* * * * *
15385737 CTTGTATTTTTGTTGGCTTGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAACATTTTGTG
260 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
15385802 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
325 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
15385867 CTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTCATGAGGGATAAGGGGCCAATATAAG
390 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
15385932 GGCCAAGTACCAGCACCCATCACACATCATGTGTGCACA-----C--CCCCCCGATCGTCGGAAC
455 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAAC
* * * ** * *
15385990 CCCAATGCCGTCGGTCAGGTTCTACGGCGATGCTCCGGTGATGGTGCCCCGACGAAGAAAAGTGC
520 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAC
* ** * *
15386055 GACACCAGCACATGCCCGAGCATAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTGATCTTAGAC
585 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* *
15386120 TGGGAATGAACTTTGTATGCTTAGA-TCGGGAATGAACTCAGTATGCCTAAGTCAACCCACGAAA
650 TGGGAATGAACTTCGTATGCTTAGACT-GGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * * * * *
15386184 CGAGCGTGCGAGCGCTCAGCTGGCCAGAGGGGTGTGACGCGCAAGCCAGGGATCGATCGGGTCCC
714 CGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCC
* * * * * ** * * *
15386249 CCTCTGCATGCTGCCAATCTTGCTACTGCAATCCT-TGAACCGGTCCAATCTTAGACTGGGAATG
779 CTTCTTCATGCTGCCGATCCTGCTGCCACAACCCTCAG-TCCGGTCCAATCTTAGACTGGGAATG
* * * * * ** * *
15386313 ATCTCCGTATGCCTAAACCAATCGAGGAAACGAGCG-GGCGAACGAGTGGGCGGGCACTAC
843 AACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGCAGCGGGCGGGCGGGCGGGCACTAC
* *
15386373 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGGCACGT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
15386438 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATTGTCCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
15386503 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTTTGAAACTTTTTG
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* * * * *
15386568 TGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGATTTTTGGCCCGAAACTTTGTAGACGAGATCC
196 TGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
15386633 TTGTATTTTTTTTGGCATGCATAAAAACATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGA
261 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * **
15386698 CCATTTGAAAAAAGTTTTCCGATTTCAGACACTTTAATGGCTACTGATAGCAAACCTGTAAAATC
326 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* ***
15386763 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAATGCCAATATAAGG
391 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * *
15386828 GCCAAGTACCAACACCCATCACACATCATGTGCGCTCACCCCCCCGACCCCCCCGATCGTCGGAA
456 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCG-GCCCCCCGATCGCCGGAA
* * ** * *
15386893 CCCCAATGCTGCCGATCAGGTTCTCCGGTGATGCTCTGAC-AGTGGTACCCCGACGAAGAAAAAT
519 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA-TGGTGCCCCGACGAAGAAAAAT
* * * * * * ** *
15386957 ACGACCCCAGCACATGCCCAAGCCCAACATCTGCTGTCGCAACCCTCGGTCAAGTCTGATCTTAG
583 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* *
15387022 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAAGTCCGTATGCCTAAGTTAACCCACGAA
648 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
15387087 ACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGAAAGCCGGGGATCGATCGGGTCC
713 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
* * * *
15387152 CCTTTTTCATGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTTGA-TAGGGAAT
778 CCTTCTTCATGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACT-GGGAAT
* * *
15387216 GAACTTCGTATGCCTAAGCCAACCGACGAAAGGAGCGGGCAAGTGGACGGGTGGGCGGGTGGGCA
842 GAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGC--GC-A---G-CGGGCGGGCGGGCGGGCA
*
15387281 CTAT
899 CTAC
* * *
15387285 GCCAGCCAGAGAGACTGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
15387350 CTTCATATTTTTGCGTGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
15387415 CTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATC-ATTTTTGAAACTTTTT
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA-CGATTTTTGAAACTTTTT
** * ** * *
15387479 GCCGTTCGGGATTTTTTCAAATTTTTTCAAAAAAAGTTTTGGCCCCAAACTTGGTAGATGTGATC
195 GTGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
*
15387544 CTTGTATTTTCTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAATGTACAAGATTTTGT
260 CTTGTATTTT-TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * ** *
15387609 GACCATTTGAAAAAAGTGTCCCGATTTTAGACACTTTAATGGCTACTGATAGCAAACCTATAAAA
324 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
15387674 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAGGATAGGGTGCCAATATAA
389 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
15387739 GGGCCAAGTACCAGCACCCATCGCACATCTTGTACGCACACCCCCCGGCCCCCTCGATCGCCGGA
454 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC-CGATCGCCGGA
** * * *
15387804 ACCAGAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCAATGAAGAAAAAT
518 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * * * *
15387869 AAGGCACCAGCACAT-CCTTGAGCCCATCATGTGCTGTCGTAACCCTCGGTCTGGTCCGATCTTA
583 ACGGCACCAGCACATGCC-CGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* * *
15387933 GACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTAACCCACGA
647 GACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * ** *
15387998 AATGAGCGTGCGGGCGTTCAGCCGGCCAAAGGGGCAGGATGCATAAGCCGGGGATCGGTCGGGTC
712 AACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* * * * *
15388063 CCCCTCTTCATGCTACCAATCCTGCTGCCACAACCCTCGGTCCGGTCCAATCTTCGACTGGGAAT
777 CCCTTCTTCATGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAAT
* * *
15388128 GAACTTCGTATGCCTAAGCCAACCGACG-AA-A-CG-A----GCGGGCGGGTGGGCACTAT
842 GAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGCAGCGGGCGGGCGGGCGGGCACTAC
* * *
15388181 GTCGGCCAGAGAGACTGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCTCAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
15388246 CTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAGGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
15388311 CTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAACTTTTTG
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* * * * * *
15388376 TGGTTCAGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCGAAACTTTGTAGACGGGATCC
196 TGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
15388441 TTGCATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGGGA
261 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * *
15388506 CTATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATC
326 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
15388571 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATATAAGG
391 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* *
15388636 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCCTGGCCCCCCCGATCGGCAG
456 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CC-CCCC-GG-CCCCCCGATCGCCGG
* * * ** * *
15388701 AACCCCAATACCGCCAGTCAAGTTCTCCGGTGACGCTCCGACGAAGGTGCCCCGACGAAGAAAAA
517 AACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAA
* * * ** *
15388766 TGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCCGGTCCGATGTTA
582 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* * *
15388831 GACTGGGAATGAAC-TCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACCATG
647 GACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
** * * * *
15388895 AATTGAACGTGCGGGCGTTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAATCGGGT
711 AAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT
* * * * ** * * ** *
15388960 CCCCCTCTACGTGCTGCCGATCCTGCTACTGCAACCCTCAATCTGGTCTGATCTTAGACTAGGAA
776 CCCCTTCTTCATGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAA
* * * * * * * * * *
15389025 TGAACTTCGTATGCCTAAGCCGATCGGCAAAACAAGCG-GGCGGGCGGGCGGCCAGACACTAC
841 TGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGCAGCGGGCGGGCGGGCGGGCACTAC
*
15389087 GCCGGCC-GAAGTGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
1 GCCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
15389151 TCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
65 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * *
15389216 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTCGTAACTTTTT
130 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
* * * *
15389281 ATGGTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCGAAACTTTGTAGACGTGATC
195 GTGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
15389346 CTTGTA-TTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
260 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * *
15389410 ACCATTTGAAAAAATTGTCCCCATTTGAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
325 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
15389475 CTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGGGTGCCAATATAAG
390 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
15389539 GGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACACCCCCCGACCCCACCGATCGCCAGAA
455 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC-CCGATCGCCGGAA
* ** * * * * * *
15389604 TCCCAATATCGTCGGTCAGGTTCTTCGACGATTCTCCGACGATGGTGCCCTGGCGAAAAAAAATA
519 CCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATA
* * * * * * * *
15389669 TGGCACCAGCACATGCCCGAGCCCAACATCTACTGCCGTAACCCTCGATCCAGTCTGATCTTAGA
584 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * *
15389734 CTGGGAATGAA-GTCTGTATACTTAGACTGGGAATGAACTTCGTA-GCCTAAGTCAACCCACGAA
649 CTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * *
15389797 AC-AGGCGTGCGGGCGCTCAGTCTGCCAAAGGGGCGGGATGCGCAAG-C------C---CGGGTC
713 ACGA-GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTC
* * * ** * ** *
15389851 CCCCTCTGT-GTACTATCGATCCTGCTG-GAGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGA
777 CCCTTCT-TCATGCTGCCGATCCTGCTGCCA-CAACCCTCAGTCCGGTCCAATCTTAGACTGGGA
* * * *
15389914 ATGAGCTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCGGGGACT
840 ATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGC--GC-AGCGGGCGGGCGGGCGGGCACT
*
15389979 AT
901 AC
* * * * * * * * *
15389981 ACCGGCCAAAGAAACGAGAGGCACAAGGCATGGATCGATAGGGTGGCAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
15390046 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
15390111 CTTCATGTGAAGTTTAATGGCAAGACAACTCGTTTTCTATTTTTCACGATATTTGAAACTTTTTG
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* * * *
15390176 -CGTTCGGGATTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCCCAAACTTGGTACACGTGATCC
196 TGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
15390240 TTGTATTTTTTTTTGGCATGCACAAAAAAGTTCAACCT-AAAACTCGAAGTGTACAAGATTTTGC
261 TTGTA-TTTTTTTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
15390304 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAA
324 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
15390369 TCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAA
389 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * **
15390434 GGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCCGGCCCCCTGGTCATC-GA
454 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGA
* * *
15390498 ACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAT
518 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
** * * *
15390563 GTGGCACCGGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGTCCGGTCCGATCTTAG
583 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* * * * * *
15390628 ATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCATATGCCTAAGTCAAACCATGAA
648 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
* * * * ** * *
15390693 ACAAGCATGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGTAAGCCAAGAATCGATCGTGTCC
713 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
* ** * * * *
15390758 CC--CTCCATGTGCTGTTGATCCTGCTACTACAACCCTCGGTCTGGTCCAATCTTAGACTGGGAA
778 CCTTCTTCA--TGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAA
* *
15390821 TGAACTCTGTATGCCTAAGCCAACCGACG-AA-A-CG-A--------GCGGGCGAGCACTAC
841 TGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGCAGCGGGCGGGCGGGCGGGCACTAC
15390871 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
15390936 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
15391001 CTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTAGAAACTTTTTA
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* * * * * * *
15391066 AGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGTCCCAAACCTGGTAGACGTGATCC
196 TGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * * *
15391131 TTCTATTTTTATTGGCATGCATAAAAAAATTCAGCTAACAACTCAAAGTGTACAAGATTTTGTGA
261 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * * * * *
15391196 CCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATTGCTATTGGCAGGAAACCTGTAAAATT
326 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
* * * * *
15391261 TCAAATGCTTTTTAAGGGGGTTTCATTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAGG
391 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* ** * *
15391326 G-CAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCATATCACCAGAAC
456 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAAC
* * *
15391390 CCCAATGCCGTCGGTCAGGTTCTCCAACGATGCT-C--C------G----G-CGAAGAAAAATGC
520 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATAC
* * * *
15391441 GGCACCATCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTTCGGTCCGATCTTAGAT
585 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGAC
* * * *
15391506 TAGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAAAC
650 TGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
* * * * * **
15391571 GAGCATGCGGGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATACGCAAGTCGGGGATCGGTCATGT
715 --G-A-GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT
* * * * * *
15391636 CCCACTCCAT-GTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTAATCTTAGACTGGGA
776 CCC-CTTCTTCATGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGA
* * * * * * ** *
15391700 ATGAACTTCGTATGCCTAAGCCAACCGAC-AAA-A-C-AAGTGGGCGGGTGTGTGTGTG-TTTAG
840 ATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGCAGCGGGCGGGCG-G-GCGGGCACTAC
** * *** * * ** *** ** **
15391760 GCACATCTTCATA-TTTCTGTG-TGC-CAATGCCATTTTTATC-ACTTGTAAATTCATACAAT-G
1 GC-CGGC--CAGAGAGAC-GGGATGCGCAA-GCC--GTGGATCGA----TAGGGTGGTA-GGTGG
* * * * * * *
15391820 GTCCCTTAAGC-CTTCATGTGA-AGTT-T-CATGGCAAGATGACTCGTTTTTTAT---TTTTCAC
54 GT---TTAGGCACATC-T-TCATATTTCTGCAT-GCCA-ATG-C-C-ATTTTTATGGCTTGT-A-
* ** *** * ** * * * * ** * * ** * ***
15391878 GATTTTCA-A-AACTTTTTATGGTTCAGGATTTA-TTAAAATTTTTTTGAAAGGA-GTTTTGGCC
107 -A-ATTCATACAA--TGGT-CCCTTAAGCCTTCACGTGAAGTTTCATGGCAA-GACGACTCGTTT
* * * ** ** * * * **
15391939 CCAAACTTGGTAGACGTGATCCTTG-TA-TTTTTGTTGG-TAGGCATAAAAAAATTCAGCTAAAA
166 TC-TA-TT-TTTCAC--GATTTTTGAAACTTTTTG-TGGTTCGGGAT-------TT--TTTAAAA
** **** * *** **
15392001 ACTCAAAGTGTACAAGA-TTTTGTGTCCC-AA-TT--TCAGAC---A--CTT-TAATGGCTACTG
216 TTTTTTCG-G-A-AAGAGTTTTG-GCCCCAAACTTGGT-AGACGTGATCCTTGT-ATTTTTTTTG
* ** * * ***** * * * ***
15392055 GCA-GCA-AACCTGTAAAATCTCA---AAATGCTCTTTAAGGGGGTGTGA-GTTCTCAAGGTTTG
275 GCATGCACAA----AAAAAT-TCAGCTAAAAACTC--GAAGTGTACAAGATTTTGTGACCATTTG
* ** * * * * ** *** * * *
15392114 ATAAAGGATAGGGGGCCAATATAAGGGC-CAAGTACCAGC-AC--CCATCGCACATCATGTACGC
333 A-AAA--A-AGTGTCCCCATTTCA-GACAC-TTTAATGGCTACTGGCA--GCA-AACCTGTA---
* * * **** * ** * * *
15392175 ACACCCCCCCGGCCCCCTGGTCATCGAACCCCAATGTCGCCG-GTCAGGTTCTCCG-GCG-ATGC
386 AAATCTCAAATG--CTCT--T--T--------AA-G--GGGGTGTGA-GTTCT-CGAG-GTTTGA
* ** * * *** * * *
15392237 TCCGA-CGAT-GGTGCCCCGAT-GAA-GAAAAATGTGGCACCGGCA--CATGCCCGAGCCTAGCA
431 T--GAGGGATAGG-GGGCCAATATAAGGGCCAA-GT---ACCAGCACCCAT-CGC-A--C-ATCA
* * ** *** ***** * * * *
15392296 TGTGCTGCCACAACCCTCGGTCCGGTCCGATC-TTAGATTGGGAATGAACTCC-GT-A--TGCTT
484 TGTGC-G-CACACCCCCCGG-CC-CCCCGATCGCCGGAACCCCAATG-CCGCCGGTCAGGTTCTC
* * * * * ** * *
15392356 AGACTGGGAATGAACTTC-A-TATGCCTAAGTCAAACC-ACGAA-ACAAGCGTGCGGGCGCTCAG
544 CGAC---G-ATG--CTCCGACGATG-GT--G-C--CCCGACGAAGA-AA-AATAC-GGCAC-CAG
* * ** * * * * ** * ** * *
15392417 C-C-GGCCAGAGGGGCGGGATGCG-TAAGCCGAGAATCGATCATGTCCCCCTCCGTGTGCTGTTG
593 CACATGCCCGA-GCCCAGCATGTGCT--GCCG-CAA-CCCTC-GGT-CCGGTCCG-AT-CT-TAG
** * * *
15392479 ATCCTGCTACTACAACCCTCGGTCTGGTCCAAT-CTTAGACTGGGAATGAACTCTGTATGCCTAA
648 A--CTGGGAAT-GAA--CT---TC--GT---ATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
* * * * * * * *
15392543 GCCAACCGACGAAACGAGCGGGCGAGCACT-ACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
700 GTCAACCCACGAAACGAGCGTGCGGGCGCTCA-GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* **** ** * * ** * **
15392607 GATCGATAGGGTGGTAGGTGGGTTTA-G--G-C-A--CT-TTTTCA-TACCTCTACA-TGCCAAT
764 GATCGATCGGGT--CCCCT-TCTTCATGCTGCCGATCCTGCTGCCACAACC-CT-CAGT-CCGGT
* * * ** ** * * * * *** * ***
15392662 GACATTTTTATTTCTTGTAAATTCATACAAT-GGTCT-CTTAAG-CTTTC-ACGTGAAG-TTTCA
823 -CCAATCTTA-GAC-TGGGAA-TGA-AC--TCCGTATGCCTAAGCCAACCGACG-AAAGAGCGCA
* * * ** ** *
15392722 --TGGCAAGACGACTCGTTTTCTATTTTTCAC
880 GCGGGC-GGGCG-GGCG--GGC-A---CT-AC
***** **** * * * ** * *** ** * * *
15392752 GATTTTCA-A-A-ACTTTTTTCG---GTTCG-GGATTTTTTAAAATTTTTTCGGAAGGAGTTTTG
1 GCCGGCCAGAGAGACGGGATGCGCAAG-CCGTGG---ATCGATAGGGTGGTAGG-TGG-GTTTAG
* * ** ** * * * ** * * *
15392810 GCCCAAAAGC-TGGTA-GACATG-AT-CC-TTG-TATTTTTGTTCCCTTGCAAA---AAAAAAT-
60 G--C-ACATCTTCATATTTC-TGCATGCCAATGCCATTTTT-ATGGCTTGTAAATTCATACAATG
* * ** * * * ** * *** ** * * *
15392865 -TCAGCTAAAAAC-T--C--GAAGTGTACA-AG-ATGTTGTGAC-CATTTGAAAAAAGTGTCCCC
120 GTC-CCTTAAGCCTTCACGTGAAGT-TTCATGGCAAG--ACGACTCGTTT--TCTATTTTTCACG
** * * * ** ** * ** ** *
15392921 ATTTCAGACACTTTAATG-GCTACTGACAGCAAACTTGTAAAATCTCAAATGCTCTTTAAGAGGG
179 ATTTTTGAAACTTT-TTGTGGT--T--C-GGGATTTTTTAAAAT-T----TTTTC-GGAA-AGAG
** * * * * * * * ****
15392985 TGTGCGGGCGGGCGCTATAC-TGACCAGAGAGATGGGATGCGCAAGCTGTCGATCGATAGGGTGG
231 T-T-TTGGC---C-CCAAACTTG----G-TAGACGTGAT-C-C---TTGT--AT--TTTTTTTGG
******** * * * ** * * * *
15393049 CAGGTGGGTTTGGGAA--CATCTTCATATTTCTACA-TG-CCAATGCCATTTTTATG-GC--TTG
276 CA--TGCACAAAAAAATTCAGC-TAAAAACTCGA-AGTGTACAA-G--A-TTTTGTGACCATTTG
* ** * * * * * * ** *
15393107 TAAATTCATACAATGGACCC--TTAAG-C-CTTCATGTGAAGTTTCATGGCA--AGACCACT-CA
333 -AAA---A-A-AGTGTCCCCATTTCAGACACTTTA-ATG--GCTAC-TGGCAGCAAACCTGTAAA
* * * * **** * ** * * **** ******
15393165 TTTTC-TAT--T-TTTCACGATAAT-TGAAACTT-TTTACGTTCGA-GATTTTTTA---AAATTT
388 ATCTCAAATGCTCTTT-AAGGGGGTGTG--AGTTCTCGAGGTTTGATGA-GGGATAGGGGGCCAA
* * *** **** * ** ** * ********* *
15393220 TTTCA-GAAAAAGTTTTGGC-CCCA----A-A-CTTG-GTACACATGATCCTCGTATTTTTTTTG
449 TATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA--CCCCCCGGCCCCCCGATC
** * *** * **** **** * * ** *
15393276 GCATGCACAAAAAAGTTTAAC--T-AAAAACT-CGA--ACTG-TAC-AAGATTTTG---CGACCA
512 GCCGGAACCCCAATG-CCGCCGGTCAGGTTCTCCGACGA-TGCTCCGACGATGGTGCCCCGACGA
* * * ** * **** * * *
15393330 TTTGAAAAA-A-GTG--TC--CTCATTTCAGA-CACTTTAATGGCTACTGGCAGCAAACCT--GT
575 --AGAAAAATACG-GCACCAGCACATGCCCGAGC-CCAGCAT-G-TGCT-GCCGCAACCCTCGGT
**** * ** ** * * * * * * **
15393386 AAAATCTCAAAATGCTCTTTA-AGGGGGTGTG-AGTTC-TCAAGGTTTGA-TAAAGGATAGGGGG
633 CCGGTC-C-----GATC-TTAGACTGGGAATGAACTTCGT-ATGCTTAGACT--GGGA-A-TGAA
** * * ** * **
15393447 C-CAATATAAGGGCC-AAGTACCAGCACCCATCGCACATC-A-TGTGCGCACAC-CCCCCGGCCC
686 CTCCGTAT----GCCTAAGT--CA--ACCCA-CG-A-AACGAGCGTGCGGGCGCTCAGCCGG---
* ** ** ** * * * **
15393507 CCCCCGA-TCGCTTGACCCCCAATGCCGCCGG-TC-A--GGTTCTTCGATGATGCTCTGACGATG
737 --CCAGAGGGGCGGGATGCGCAA-GCCG-GGGATCGATCGGGTC--CCCT--T-CT-T--C-ATG
* *** * *** * * * * **
15393567 GTGCCCTGATGAAGAAAAATGTGGC-ACCGGCACATGCCCGAGCCCAGCAT-GT-G-CT-GCCAT
789 CTG-CC-GATCCTG----CTGCCACAACC--CTCA-GTCCG-GTCCA--ATCTTAGACTGGGAAT
* * * * ** * * * * * ***
15393627 -AAC-CCTTGTTCCGGTTCGATGTTAAACTG-GGAATGAACTCCATATGCTTAGATTGGGAATAA
842 GAACTCCGTATGCC---T--AAG-CCAACCGACGAAAGAGC-GC--A-GC---GGGCGGG-----
** * *
15393689 AC-TCCGTATGC-CTAA
889 -CGGGCG--GGCACTAC
*** * * * * * ***
15393704 GTCAACCCATGA-ATTGAACGTGCG-GGCGCTCAGCC--GG--CCA-AAGG-GGCAGGAT-GCAC
1 G-CCGGCCA-GAGA--G-ACG-G-GATGCGC-AAGCCGTGGATCGATAGGGTGGTAGG-TGGGTT
* * * ** * *** * * * * * * ***
15393760 AAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTG-C--TACCGATCCTGT-T-GC-CGCCACCCTC
57 TAGGC-A-CATC-TTC--AT--ATTTCTGCATGCCAATGCC-AT-TTTTATGGCTTG-TAAATTC
** * *** * *
15393819 AGT-C--TGGTCCAATCTTAGACTGGGAATGATCTCCGTATGCCTAAGCCAACCGACGAAACGAA
112 A-TACAATGGTCC---CTTA-A----GCCT--TC-ACG--TG---AAG--TTTC-ATG--GC-AA
* * * **** **** *** ** *
15393881 CGGGCGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
154 --GAC-GAC--TCGTTTTCTAT--TTTTC------ACGATTTTTG-AA-AC-T---T---T----
* * ** * * * * * * * * ***
15393946 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAA
193 T--T--GT-GG-TTCGGGATTTTTTAAAATTTTTTC--G-GAAAG--A-GTTT-TGGC-CCCAAA
** * * * *
15394011 -TTCATACA-ATGGTCCCTTAAGCCTTCTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAA
244 CTTGGTAGACGTGAT-CCTT--G-----TATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAA
* *
15394074 ACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAGTGG
301 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
*
15394139 CTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
366 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* * *
15394204 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTACGGACACC
431 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-C
* * * * *
15394269 CCCCCAGCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCG
495 CCCCCGGCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACG
* ** * *
15394334 ATGGTGCCCC-AGCGAAGAAAAATGCGGCACCAGCACATGCCCGATTCCAGCATGTGCTGTCGTA
560 ATGGTGCCCCGA-CGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
*
15394398 ACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAAC-TCTGTATGCTTAGACTGGGAATGAACT
624 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACT
* * * *
15394462 CTGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCATCCAGG-CAGAGGGGTGGGAT
688 CCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCC-GGCCAGAGGGGCGGGAT
* * * * * * * **
15394526 GCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCTGCAACCCTCAG
752 GCGCAAGCCGGGGATCGATCGGGTCCCCTTCTTCATGCTGCCGATCCTGCTGCCACAACCCTCAG
* * *
15394591 TCCGGTCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GG
817 TCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGCAG
*
15394655 CGGGCGGGCGGGCGGGCACAAC
881 CGGGCGGGCGGGCGGGCACTAC
* * **
15394677 GTCGGCAAGAGAGACAAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
15394742 CTTCATAGTTATGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
15394807 CTTCACGTGAAGTTTCATGGCAAGACGACTCGCTTTT-TATTTTTCACGATTTTTCAAACTTTTT
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTT
** *** * * *
15394871 ACGGTTCTAAATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACATGATG
195 GTGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * *
15394936 CTTGT-TTTTTTGTTGGCATGCATAAAACAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGT
260 CTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
15395000 GACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
324 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
15395065 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGA-GGATAGGGGGCCAATATAA
389 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* *
15395129 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGCCCCCCCCGATCGCTGGA
454 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG-GCCCCCCGATCGCCGGA
* * * *
15395194 ACCCTAATGCCGCCGATCAGGTTCTCTGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAAT
518 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
** * * ** * * ** *
15395259 GTGGCACCGGCACATGCCCGAGCCCAGTATGTGCTGCCATAACCCTCGTTCTGGTTTGATGTTAG
583 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* * * * *
15395324 ACTGGGAATGAACTCCATATGCTTAGATTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAA
648 ACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
** * * ** **
15395389 TTGAACGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCAAGGATCGGCCGGGTCC
713 ACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
* * * * * * * * *
15395454 CCCTCTGCGTGCTACCGATCCTGTTGCCGCCACCCTCAGTCTGGTCCAATCTCAGACTGGGAATG
778 CCTTCTTCATGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATG
* * *
15395519 ATCTCCGTATGCCTAAGCCAACCGACG-AA-A-CG-AGCGGGCGGGCGGGCAGGCACTAT
843 AACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGCAGCGGGCGGGCGGGCGGGCACTAC
15395575 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
15395640 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * * ** *
15395705 CTTCACGTGAAGTTTCGTGGCAAGACAACTCGTTTTCTATTTTTCATGATTTTTCAAAAATTTTA
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* *** * * *
15395770 CGGTTTACGATTTTTTAAAATTATTTT-GGAAGGAGTTTTGGCCCCAAACATGGTAGACATGATC
196 TGGTTCGGGATTTTTTAAAATT-TTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* *
15395834 CTTGT-TTTTTTGTTGGCATG------------CA-CTAAAAACTCTAAGTGTACAAGATTTGGT
260 CTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * * *
15395885 GATCATTTGAAAAACGTGTCCCCATTTTAGACACTTTAATTGCTACTGGAAGCAAACCTGTAAAA
324 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
15395950 TCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
389 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * *
15396015 GGGCCAAGTACCAGCACCCATCACACATCATGTACGGACACCCCCCCAGCCCCCCGATCGTCGGA
454 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGA
* * *
15396080 AACCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCTGGCGATGGTGCCCC-AGCGAAGAAAAA
518 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAA
* ** * * *
15396144 TGCGGCACCAGCACATGCCCGATTCCAGCATGTGCTGTCGTAACGCTCGGTCCGGTCCGATCTTA
582 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* * * *
15396209 GATTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGA
647 GACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGA
* * * * *
15396274 AACGAGGGTGCGGGCGCTCAGCCAGG-CAGAGGTGTGGGATGCGCAAGCCGGGGATCGGTCAGGT
712 AACGAGCGTGCGGGCGCTCAGCC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT
* * * ** * * * *
15396338 CCCCCTCTACATGCTGCCGATCTTGCTGCTGCAACCCTCGGTCCGATCCAATTTTAGACTAGGAA
776 CCCCTTCTTCATGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAA
* * *
15396403 TGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GGCGGGCGGGCGGGCGGTCACAAC
841 TGAACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGCAGCGGGCGGGCGGGCGGGCACTAC
** * * *
15396465 ATCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTACGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
15396530 CTTCATATTTATGCTTGCGAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
*
15396595 CTTCACGTGAAGTTTCATGGCAAGACGACTCGCTTTT-TATTTTTCACGATTTTTCAAACTTTTT
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCACGATTTTTGAAACTTTTT
** *** * * * *
15396659 ACGGTTCTAAATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCCCAAACATGGTAGACATGATC
195 GTGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
15396724 CTTGT-TTTTTTGTTGGCATG------------CA-CTAAAAACTCGAAGTGTACAAGATTTTGT
260 CTTGTATTTTTT-TTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
* * * * *
15396775 GATCATTTGAAAAACGTGT-CCCATTTTAGACACTTTAATTGCTACTGGAAGCAAACCTGTAAAA
324 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
*
15396839 TCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
389 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * * * *
15396904 GGGCCAAG-ACCAGCACCCATCACACATCATGTACGGACACCCCCCCAGCCCCCCGATCGTCGGA
454 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGA
* * * *
15396968 AACCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCTGGCGATGGTGCCCC-AGCGAAGAAAAA
518 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAA
* ** ** *
15397032 TGCGGCACCAGCACATGCCCGATTCCAGCATGTGCTATCGTAACCCTCGGTCCGGTCCGATCTTA
582 TACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTA
* *
15397097 GACTGGGAATGAAC-TCTGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTGAACCCACG
647 GACTGGGAATGAACTTC-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACG
* * * * *
15397161 AAACGAACGTGCGGGCGCTCAGCCTGG-CAGAGGGGTGGGATGCGCAAGCTGGGGATCGGTCAGG
711 AAACGAGCGTGCGGGCGCTCAGCC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGG
* * * * * ** * * *
15397225 TCCCCCTCTGCGTGCTGCCGATCTTGCTACTGCAACCCTCGGTCCGGTCCAATTTTAGACTAGGA
775 TCCCCTTCTTCATGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGA
* *
15397290 ATGAACTCCGTATGCCTAAGCCAACTGACG-AA-A-CG-A--------GCGGGCGGGCACAAC
840 ATGAACTCCGTATGCCTAAGCCAACCGACGAAAGAGCGCAGCGGGCGGGCGGGCGGGCACTAC
* * **
15397341 GTCGGCAAGAGAGACAAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * *
15397406 CTTCATATTTATGCTTGCCATTGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
15397471 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTAGAAACTTTTTA
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* ** * * * * *
15397536 AGGTTCAAGA-TTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACGTGATAGACATGATCC
196 TGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
15397600 TTCTATTTTTATTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGA
261 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* ** *
15397665 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAGGGGCTACTGGCAGTAAACCTGTAAAATC
326 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
15397730 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
391 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * ** * * * * *
15397795 GCCAAGTACCAGCACCCATCACATATCATGTATGGAAACCCCCCCAGCCCCCCGATCGTCGGAAA
456 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGCCGGAAC
* * * * *
15397860 CCCAATGCCGTCGGTCAGGTTCTCTGACGATGCTCTGGCGATGGTGCCCC-AGCGAAGAAAAATG
520 CCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA-CGAAGAAAAATA
** * * *
15397924 CGGCACCAGCACATGCCCGATTCCAGCATGTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGA
584 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
*
15397989 CTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAA
649 CTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
* * *
15398054 CGAGCGTGCGGGCGCTCAGCCAGG-CAGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCAGGTCC
714 CGAGCGTGCGGGCGCTCAGCC-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC
* * * * ** * * *
15398118 CCCTCTGCGTGCTGCCGATCTTGCTGCTGCAACCCTCGGTCCGGTCCAATTTTAGACTAGGAATG
778 CCTTCTTCATGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATG
* *
15398183 AACTCCGTATGCCTAAGCCAACCGACGAAACGAGCG-GGCGGGCGGGCGGGCGGGCACAAC
843 AACTCCGTATGCCTAAGCCAACCGACGAAA-GAGCGCAGCGGGCGGGCGGGCGGGCACTAC
** * *
15398243 ATCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
1 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* * * *
15398308 CTTCATATTTATGCTTGCGAATGCCATTTTTATGGCTTGTAAATTCATAAAATGGTCCCTTAAGC
66 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * * *
15398373 CTTCACGTGAAGTTTCATCGCAAGACAACTCGTTTTCTATTTTTCACGATTTTTCAAACTTTTTA
131 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
* *** * * *
15398438 CGGTTCTAAATTTTTTAAAATTTTTTCGGAAGGCGTTTTGGCCCCAAACTTGGTAGACATGATCC
196 TGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
15398503 TTGT-TTTTTGTTGGCATGCACAAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
261 TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
15398567 CCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
326 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
15398632 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
391 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * *
15398697 GCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCAGCCCCCCGATCGTCGGAACC
456 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACC
* * * * *
15398762 CCAATGCCGCTGGTCAGGTTCACC-AGTGATTCTCC-AGCGATGGTGCCCCGACGAAGAAAAATG
521 CCAATGCCGCCGGTCAGGTTCTCCGA-CGATGCTCCGA-CGATGGTGCCCCGACGAAGAAAAATA
* * * *
15398825 CAGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGA
584 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGA
* * *
15398890 CTAGGATTGAACTCCGTATGC
649 CTGGGAATGAACTTCGTATGC
15398911 CTAAGCCAAC
Statistics
Matches: 12238, Mismatches: 2144, Indels: 1718
0.76 0.13 0.11
Matches are distributed among these distances:
875 65 0.01
876 336 0.03
877 1 0.00
879 30 0.00
880 131 0.01
881 2 0.00
883 6 0.00
884 6 0.00
885 215 0.02
886 445 0.04
887 90 0.01
888 770 0.06
889 347 0.03
890 1422 0.12
891 118 0.01
892 10 0.00
893 70 0.01
894 196 0.02
895 943 0.08
896 426 0.03
897 26 0.00
898 582 0.05
899 31 0.00
900 65 0.01
901 324 0.03
902 814 0.07
903 320 0.03
904 458 0.04
905 144 0.01
906 373 0.03
907 344 0.03
908 105 0.01
909 9 0.00
910 41 0.00
911 112 0.01
912 602 0.05
913 216 0.02
914 7 0.00
915 29 0.00
916 68 0.01
917 286 0.02
918 90 0.01
919 75 0.01
920 10 0.00
921 41 0.00
922 27 0.00
923 31 0.00
924 68 0.01
925 22 0.00
926 13 0.00
927 3 0.00
928 13 0.00
929 68 0.01
930 14 0.00
931 4 0.00
932 3 0.00
933 6 0.00
934 5 0.00
935 7 0.00
936 22 0.00
937 14 0.00
938 7 0.00
939 5 0.00
940 8 0.00
941 5 0.00
942 11 0.00
943 10 0.00
944 18 0.00
945 19 0.00
946 19 0.00
947 8 0.00
948 11 0.00
949 12 0.00
950 10 0.00
951 6 0.00
952 7 0.00
953 5 0.00
954 2 0.00
955 8 0.00
956 5 0.00
957 2 0.00
958 14 0.00
959 7 0.00
960 7 0.00
961 10 0.00
962 9 0.00
963 6 0.00
964 10 0.00
965 19 0.00
966 23 0.00
967 31 0.00
968 30 0.00
969 18 0.00
970 9 0.00
971 25 0.00
972 16 0.00
973 18 0.00
974 6 0.00
975 5 0.00
976 5 0.00
977 8 0.00
978 10 0.00
979 14 0.00
980 12 0.00
981 8 0.00
982 21 0.00
983 55 0.00
984 21 0.00
985 19 0.00
986 12 0.00
987 52 0.00
988 13 0.00
989 11 0.00
990 14 0.00
991 16 0.00
992 12 0.00
993 29 0.00
994 14 0.00
995 17 0.00
996 23 0.00
997 12 0.00
998 14 0.00
999 27 0.00
1000 23 0.00
1001 7 0.00
1002 16 0.00
1003 15 0.00
1004 8 0.00
1005 5 0.00
1006 9 0.00
1007 15 0.00
1008 5 0.00
1009 6 0.00
1010 20 0.00
1011 10 0.00
1012 11 0.00
1013 5 0.00
1014 11 0.00
1015 17 0.00
1016 13 0.00
1017 9 0.00
1018 2 0.00
1019 11 0.00
1020 4 0.00
1021 5 0.00
1022 10 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (902 bp):
GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
TGGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
TTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGCCGGAACC
CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
GGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACG
AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCT
TCTTCATGCTGCCGATCCTGCTGCCACAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGCCAACCGACGAAAGAGCGCAGCGGGCGGGCGGGCGGGCACTAC
Found at i:15387958 original size:26 final size:26
Alignment explanation
Indices: 15387929--15387981 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15387919 CTGGTCCGAT
15387929 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
15387955 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
15387981 C
1 C
15387982 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:15388864 original size:26 final size:26
Alignment explanation
Indices: 15388821--15388879 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
15388811 CTCGGTCCGG
15388821 TCCG-ATG-TTAGACTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
* *
15388845 TCTGTATGCTTAGATTGGGAATGAAC
1 TCCGTATGCTTAGACTGGGAATGAAC
15388871 TCCGTATGC
1 TCCGTATGC
15388880 CTAAGTCAAA
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
24 3 0.10
25 3 0.10
26 24 0.80
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (26 bp):
TCCGTATGCTTAGACTGGGAATGAAC
Found at i:15389759 original size:26 final size:24
Alignment explanation
Indices: 15389720--15389770 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 24
15389710 CCCTCGATCC
15389720 AGTCTGATCTTAGACTGGGAATGA
1 AGTCTGATCTTAGACTGGGAATGA
15389744 AGTCTGTATACTTAGACTGGGAATGA
1 AGTCTG-AT-CTTAGACTGGGAATGA
15389770 A
1 A
15389771 CTTCGTAGCC
Statistics
Matches: 25, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
24 6 0.24
25 2 0.08
26 17 0.68
ACGTcount: A:0.31, C:0.12, G:0.27, T:0.29
Consensus pattern (24 bp):
AGTCTGATCTTAGACTGGGAATGA
Found at i:15389959 original size:4 final size:4
Alignment explanation
Indices: 15389950--15389974 Score: 50
Period size: 4 Copynumber: 6.2 Consensus size: 4
15389940 GACGAAACGA
15389950 GCGG GCGG GCGG GCGG GCGG GCGG G
1 GCGG GCGG GCGG GCGG GCGG GCGG G
15389975 GACTATACCG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 21 1.00
ACGTcount: A:0.00, C:0.24, G:0.76, T:0.00
Consensus pattern (4 bp):
GCGG
Found at i:15390674 original size:26 final size:26
Alignment explanation
Indices: 15390623--15390675 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15390613 CCGGTCCGAT
* *
15390623 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15390649 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15390675 C
1 C
15390676 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15391003 original size:890 final size:890
Alignment explanation
Indices: 15382701--15391742 Score: 10655
Period size: 895 Copynumber: 10.1 Consensus size: 890
15382691 ATCTGATCTG
* * * * * *
15382701 ATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACTC-ACGAAACGAGCGTGC-AGGAGTT
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAC-CGACGAAACGAGCGGGCGAGCACTA
* *
15382764 CAGCCGGCCAGAGAGACGGGATG-GCCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTCAGGCA
65 C-GCCGGCCAGAGAGACGGGATGCG-CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*
15382828 CATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
128 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
* * * * * *
15382893 AGCCTGCACATGAAGTTTCATGGCAAGACGCCTCATTTTCTATTTTTCATGATTTTTGAAAAATT
193 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG-AAACTT
* * * * *
15382958 TCAT-AGTTCGAGATTTTTTAAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
257 T-TTGCGTTCGGGATTTTTT-AAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGT
*
15383021 GATCCTTTTA-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
320 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTT
*
15383085 TGAGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
385 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* * *
15383150 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGAAAGGGGGCCAATC
450 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATA
* * *
15383215 TAAAGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACACCCCTCCGGCCCCCCTGATCGC
515 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGG-CCCCCTGATCGC
* * * * * **
15383280 CGGAACCCCAATGTCGTCGGTCAGGTTCTTCGACGATGCTCTGACGATGGTGCCCTGGTGAAGAA
579 CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAA
* * *
15383345 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTTCGGTTCGATC
644 AAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATC
* *
15383410 TTAGACTGGGAATGAATTCTGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
709 TTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCA
* * * * * * * *
15383475 TGAAACGAGCGTGTGGGCACTCAGCCGGCCGACCAGAGGGGCGGGATGTGCAAGTCAGGGTTC-A
774 CGAAACAAGCGTGCGGGCGCTCAGCC-G--G-CCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * * * *
15383539 GCCGGTTCCCCCTCTATGTGCTGTCGATCTTACTACCACAACCCTCAGTCCGGTCCG
835 -TCGGGTCCCCCTCCATGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCA
* *
15383596 ATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGAGTGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGA----GCGGGCG
* *
15383661 AGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGG
58 A----GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
* *
15383726 GTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAACTCATACAAT
119 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * *
15383791 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTGGTTTTCTTTTTTTCACGATTTT
184 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * **
15383856 TAAAACTTTTTGTGATTTC-AAATTTTTTAAAATTTTTTC-GAAAG-GATTATTGGCCCCAAACT
249 TGAAACTTTTTGCG--TTCGGGATTTTTTAAAATTTTTTCGGAAAGAG-TT-TTGGCCCCAAACT
* * *
15383918 TGGTAGAAGTGATCCTTGTATTTTTGTTGGCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTG
310 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
15383983 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATCTCAGACACTTT-ATGGCTACTGGCAG
375 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
15384047 CAAACCTGTAAGATCTTAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAG
440 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
15384112 GAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCC
505 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCC
** * * *
15384176 CCT-ATCATCGGAACCCTAATCCCGCCGGTCAGGTTCTCCGACGATGCT-CTAGCGATGGTG-CC
570 CCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCC
* * * * *
15384238 CGGCGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCACCATGTGCTGCCACAACCCTCGGTC
634 CGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
*
15384303 TGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTAAAATGAACTCTGTATGCTTA
699 CGGTCCGATCTTAGACTGGGAATGAACT-C-----C---G---T---ATG----CT-TA-G----
* * * * *
15384368 AACTGGGAATGAACGTCGTATGCCTAAGTCAACCCACGAAACATGCGTGCGAGAGCTCAACCGGC
739 -ACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
15384433 CAGAGGGGC-GGATGCACAAG-CGGGGATCGACCGGGTCCCCCCTCTACGTGCTACCCATCCTGC
803 CAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGT-CCCCCTCCATGTGCTGCCGATCCTGC
* * * *
15384496 TGCCACAACCCTCAGTCTGGTCTA
867 TACCACAACCCTCGGTCCGGTCCA
* * * *
15384520 ATCTTAGACT-GGAATGACCTCCGTATG-CGAAGCCAACTGACGAAATGAGCGCGCGGCGGGCGG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A---CG-AGCGGGC--
* * * *
15384583 TGGGCAC-ACGCCGACAAGAGAGAC-GG-TGCGCAAGCCGTGGATTGATAGGG-GTGTAGGTGGG
57 -GAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTG-GTAGGTGGG
* *
15384644 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACG
120 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
15384709 GTCCCTTAAGCCTTCACGTGCAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
185 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* ** * *
15384774 GAAACTTTCTGCGGTTCAAGATTTTTTAAAATTTTTT-GGAAGGATTTTTGGCCCCAAACTTGGT
250 GAAACTTTTTGC-GTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGT
* * * *
15384838 TGACGTGATCCTTGTATTTTTGTTGGGATGCAAAAAAAAAATTCAGCTAAAAAC-CTGAAGTGTA
314 AGACGTGATCCTTGTATTTTTTTTGGCATGC-ACAAAAAAATTCAGCTAAAAACTC-GAAGTGTA
* * * * *
15384902 CAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCGGAGACTTTAATGGCTACTGGTAGCA
377 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
15384967 AACCTGTGAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCCCAAGGTTTAATGAGGGATAGGG
442 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * *
15385032 GGTCCAATATGAGGGCCAAGTACCAGCACCCATCGCACATTATGTGCGCACA-CCCCCTGGCACC
507 GG-CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC-CC
* * * * *
15385096 CCAGATCACCGGAACCCCAATGTCGCCGGTCA---------A-G-TTCTCCGACGATGGTGCCCT
570 CCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * *
15385150 GACGAACAAAAATACGGCACCAGCACATGCACGAGCCCAGCATGTGCTGCCGCAACCCTCGATCT
635 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * *
15385215 GGTCCGATCTTCGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAACTACGTATGCCTAA
700 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
* *
15385280 GTCAACCCACGAAACAAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCTGGGG
765 GTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * * * ** * ** ** * *
15385345 ATCGGTCGGGTCCCCTTCTATGTGCTGCCGATCCTACTGTCGCAACCCTAAGTTTGAT-CG
830 ATCGATCGGGTCCCCCTCCATGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCA
* * * *
15385405 ATCTTAGACTAGAAATGAACTCCGTATGCCTAAGCCAATCGATGAAATAAGCGGCTAGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG--A-AA-C-G--A-GCGGGCG
* ** * *
15385470 GGCACTATACCGGCCAGAGAGACGGGATGCGCAAGCCATGGATCGATAGGGTGGTAGGTGGGTTA
58 AGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * *
15385535 AGGCACATCTTCATATTTCTGCTTGCCAATGCCATTTTTATGGCTTGTAAATTCACACAATGATC
123 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* *
15385600 CCTTAAGGCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCACGATTTTTGAA
188 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * *
15385665 ACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAG-TTTGCGCCCCAAACTTGGTAG
253 ACTTTTTGC-GTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTG-GCCCCAAACTTGGTAG
* * * * * * *
15385729 ACATTATCCTTGTATTTTTGTTGGCTTGCACAAAACAATTCAGCTAAAAACTCAAAGTGTACAAC
316 ACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
15385794 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
381 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * *
15385859 TGTAAAATCTCAAATGCTCTTTAAGGGAGTGTGAGTTCTTGAGGTTTCATGAGGGATAAGGGGCC
446 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
15385924 AATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGTGCACA-----CC--CCCCC-GAT
511 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTGAT
* * * * **
15385981 CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTACGGCGATGCTCCGGTGATGGTGCCCCGACGAA
576 CGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
* * * ** * *
15386046 GAAAAGTGCGACACCAGCACATGCCCGAGCATAGCATGTGCTGTCGCAACCCTCGGTCCGGTCTG
641 GAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCG
**
15386111 ATCTTAGACTGGGAATGAACTTTGTATGCTTAGA-TCGGGAATGAAC-TCAGTATGCCTAAGTCA
706 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGGAATGAACTTC-GTATGCCTAAGTCA
* * * * * * *
15386174 ACCCACGAAACGAGCGTGCGAGCGCTCAGCTGGCCAGAGGGGTGTGACGCGCAAGCCAGGGATCG
769 ACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * ** * * **
15386239 ATCGGGTCCCCCT-C-TGCATGCTGCCAATCTTGCTACTGCAATCCTTGAACCGGTCCA
834 ATCGGGTCCCCCTCCATG--TGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCA
* * * *
15386296 ATCTTAGACTGGGAATGATCTCCGTATGCCTAAACCAATCGAGGAAACGAGCGGGCGAACGAGTG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GG-G--CGA---
*
15386361 GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGAGTGGTAGGTGG
59 -----GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
15386426 GTTTAGGCACGTCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
119 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* * * *
15386491 TGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCATGATTTT
184 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
* * * * *
15386556 TGAAACTTTTTGTGGTTCGGGATTTTTTAAAATTTTTTTGGAAAGATTTTTGGCCCGAAACTTTG
249 TGAAACTTTTTG-CGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGG
* * * *
15386621 TAGACGAGATCCTTGTATTTTTTTTGGCATGCATAAAAACATTCAGCTAAAAACTTGAAGTGTAC
313 TAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * * **
15386686 AAGATTTTGTGACCATTTGAAAAAAGTTTTCCGATTTCAGACACTTTAATGGCTACTGATAGCAA
378 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* ***
15386751 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGAAT
443 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
15386816 GCCAATATAAGGGCCAAGTACCAACACCCATCACACATCATGTGCGCTCACCCCCCCGACCCCCC
508 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCG-GCCCCC
* * * * ** * *
15386881 CGATCGTCGGAACCCCAATGCTGCCGATCAGGTTCTCCGGTGATGCTCTGAC-AGTGGTACCCCG
572 TGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA-TGGTGCCCCG
* * * * * * **
15386945 ACGAAGAAAAATACGACCCCAGCACATGCCCAAGCCCAACATCTGCTGTCGCAACCCTCGGTCAA
636 ACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* * * *
15387010 GTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAAGTCCGTATGCCTAAG
701 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAG
* * * * *
15387075 TTAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTGAAAGCCGGGGA
766 TCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
* * * *
15387140 TCGATCGGGTCCCCTTTTTCA--TGCTACCGATCCTGCTGCCACAACCCTCGGTCCGGTCCA
831 TCGATCGGGTCCCC--CTCCATGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCA
* *
15387200 ATCTTTGA-TAGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAAGGAGCGGGCAAGTGGAC
1 ATCTTAGACT-GGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-C--G--A---G-C
* * * * *
15387264 GGGTGGGCGGGTGGGCACTATGCCAGCCAGAGAGACTGGATGCGCAAGCCATGGATCGATAGGGT
53 ----GGGC----GAGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
* * *
15387329 GGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCGTGTCAATGCCATTTTTATGGCTTGTAAAT
110 GGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
15387394 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTT
175 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
* ** *
15387459 CATC-ATTTTTGAAACTTTTTGCCGTTCGGGATTTTTTCAAATTTTTTCAAAAAAAGTTTTGGCC
240 CA-CGATTTTTGAAACTTTTTG-CGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCC
*
15387523 CCAAACTTGGTAGATGTGATCCTTGTATTTTCTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
303 CCAAACTTGGTAGACGTGATCCTTGTATTTT-TTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * *
15387588 TCGAAATGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCGATTTTAGACACTTTAATGGCT
367 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
** *
15387653 ACTGATAGCAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
432 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
15387718 AAGGATAGGGTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCTTGTACGCACA-CCC
497 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
**
15387782 CCCGGCCCCCTCGATCGCCGGAACCAGAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA
562 CCCGGCCCCCT-GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGA
* * * * * * * *
15387847 TGGTGCCTCAATGAAGAAAAATAAGGCACCAGCACAT-CCTTGAGCCCATCATGTGCTGTCGTAA
626 TGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCC-CGAGCCCAGCATGTGCTGCCGCAA
* * *
15387911 CCCTCGGTCTGGTCCGATCTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCC
690 CCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC
* ** * * * *
15387976 GTATGCCTAAGTTAACCCACGAAATGAGCGTGCGGGCGTTCAGCCGGCCAAAGGGGCAGGATGCA
755 GTATGCCTAAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCG
* * * * *
15388041 TAAGCCGGGGATCGGTCGGGTCCCCCTCTTCA--TGCTACCAATCCTGCTGCCACAACCCTCGGT
820 CAAGCCGGGGATCGATCGGGTCCCCCTC--CATGTGCTGCCGATCCTGCTACCACAACCCTCGGT
15388104 CCGGTCCA
883 CCGGTCCA
* * *
15388112 ATCTTCGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGTGGGCA
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC----GAGCA
* * *
15388177 CTATGTCGGCCAGAGAGACTGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
62 CTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGC
* *
15388242 TCATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
127 ACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTT
* * * *
15388307 AGGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCATGATTTTCGAAACTT
192 AAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
* * * * * * *
15388372 TTTGTGGTTCAGGATTTTTTAAAATTTTTTCAGAAAGATTTTTGGCCCGAAACTTTGTAGACGGG
257 TTTG-CGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTG
* *
15388437 ATCCTTGCATTTTTTTTGTCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
321 ATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
* * * * *
15388502 GGGACTATTTGAAAAAAATGTCCCCATTTTAGACACTTTAATGGCTACTGACAGCAAACCTGTAA
386 GTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAA
*
15388567 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGGGCCAATAT
451 AATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATAT
*
15388632 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCTCCCCTGGCCCCCCCGATCG
516 AAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCC-GG-CCCCCTGATCG
* * * * * ** * *
15388697 GCAGAACCCCAATACCGCCAGTCAAGTTCTCCGGTGACGCTCCGACGAAGGTGCCCCGACGAAGA
578 CCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGA
* * * **
15388762 AAAATGCAGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCATAACCCTCGGTCCGGTCCGAT
643 AAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGAT
* * * * *
15388827 GTTAGACTGGGAATGAACTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAAACC
708 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCC
* ** * * *
15388892 ATGAATTGAA-CGTGCGGGCGTTCAGTCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAATC
773 ACGAA-ACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * ** ** * **
15388956 GGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGCAACCCTCAATCTGGTCTG
837 GGGTCCCCCTCCATGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCA
* * * * ** *
15389010 ATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCGATCGGCAAAACAAGCGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC-AACCG-ACGA-AA-----CGAGCGGGC-
*
15389075 GCCAGACACTACGCCGGCC-GAAGTGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
57 G--AG-CACTACGCCGGCCAG-AGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
15389139 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
118 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
15389204 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTT
183 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
15389269 TCGTAACTTTTTATG-GTTCGGGATTTTTTAAAATTTTTTCAGAAAGAGTTTTGGCCCGAAACTT
248 TTGAAAC-TTTT-TGCGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTT
* * *
15389333 TGTAGACGTGATCCTTGTA-TTTTGTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
311 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
15389397 ACAAGATTTTGTGACCATTTGAAAAAATTGTCCCCATTTGAAACACTTTAATGGCTACTGGCAGC
376 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
15389462 AAACCTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTCAAGGTTTCATGAGGGATAGG
441 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* * *
15389526 GTGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGCGCACA-CCCCCCGACCCC
506 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCC
* * * ** * * * *
15389590 ACCGATCGCCAGAATCCCAATATCGTCGGTCAGGTTCTTCGACGATTCTCCGACGATGGTGCCCT
571 -CTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCC
* * * * * * * *
15389655 GGCGAAAAAAAATATGGCACCAGCACATGCCCGAGCCCAACATCTACTGCCGTAACCCTCGATCC
635 GACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * * *
15389720 AGTCTGATCTTAGACTGGGAATGAAGTCTGTATACTTAGACTGGGAATGAACTTCGTA-GCCTAA
700 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAA
* * * *
15389784 GTCAACCCACGAAACAGGCGTGCGGGCGCTCAGTCTGCCAAAGGGGCGGGATGCGCAAG-C----
765 GTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
** * ** ** * **
15389844 --C---CGGGTCCCCCTCTGTGTACTATCGATCCTGCT-GGAGCAACCCTCAGTCCGGTCTG
830 ATCGATCGGGTCCCCCTCCATGTGCTGCCGATCCTGCTACCA-CAACCCTCGGTCCGGTCCA
* * *
15389900 ATCTTAGACTAGGAATGAGCTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA------------GCG
* ** * * * * * * * *
15389965 GGCGGGCGGGGACTATACCGGCCAAAGAAACGAGAGGCACAAGGCATGGATCGATAGGGTGGCAG
54 GGCGAGC----ACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAG
*
15390030 GTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
115 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* * * *
15390095 CAATGGACCCTTAAGCCTTCATGTGAAGTTTAATGGCAAGACAACTCGTTTTCTATTTTTCACGA
180 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
15390160 TATTTGAAACTTTTTGCGTTCGGGATTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCCCAAACT
245 TTTTTGAAACTTTTTGCGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACT
* * *
15390225 TGGTACACGTGATCCTTGTATTTTTTTTTGGCATGCACAAAAAAGTTCAACCT-AAAACTCGAAG
310 TGGTAGACGTGATCCTTGTA-TTTTTTTTGGCATGCACAAAAAAATTC-AGCTAAAAACTCGAAG
* *
15390289 TGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGC
373 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
15390354 AGCAAACCTGTAAAATCTTAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATAAGGGAT
438 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
15390419 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGCACACCCCCCCGGC
503 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGC
* ** * *
15390484 CCCCTGGTCATC-GAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCC
568 CCCCTGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCC
* ** * * *
15390548 CCGATGAAGAAAAATGTGGCACCGGCACATGCCCGAGCCTAGCATGTGCTGCCACAACCCTCGGT
633 CCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
15390613 CCGGTCCGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCATATGCCT
698 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCT
* * * * * **
15390678 AAGTCAAACCATGAAACAAGCATGCGGGCGCTCAGCTGGCCAGAGGGGCGGGATGCGTAAGCCAA
763 AAGTCAACCCACGAAACAAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGG
* * ** * *
15390743 GAATCGATCGTGTCCCCCTCCATGTGCTGTTGATCCTGCTACTACAACCCTCGGTCTGGTCCA
828 GGATCGATCGGGTCCCCCTCCATGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCA
*
15390806 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCACTAC
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCACTAC
15390871 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
66 GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
*
15390936 CTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
131 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* *
15391001 CTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTAGAAACTTTTTA
196 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT-
* * * * * *
15391066 AG-GTTCGAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGTCCCAAACCTGGTAGACGTGATC
260 -GCGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATC
* * * * *
15391130 CTTCTATTTTTATTGGCATGCATAAAAAAATTCAGCTAACAACTCAAAGTGTACAAGATTTTGTG
324 CTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* * * * *
15391195 ACCATTTGAAAAAAGTGTCTCCATTTTAGACACTTTAATTGCTATTGGCAGGAAACCTGTAAAAT
389 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * * * *
15391260 TTCAAATGCTTTTTAAGGGGGTTTCATTTCTCGAGGTTTGATGAGGGATAGGGGGACAATATAAG
454 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * *
15391325 GG-CAAGTACTAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCAT-ATCACCAGA
519 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCC-TGATCGCCGGA
* *
15391388 ACCCCAATGCCGTCGGTCAGGTTCTCCAACGATGCT-C--C------G----G-CGAAGAAAAAT
583 ACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * * *
15391439 GCGGCACCATCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTTCGGTCCGATCTTAG
648 ACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAG
* * * * *
15391504 ATTAGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCATATGCCTAAGTCAACCCACGAA
713 ACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAA
* * * * * **
15391569 ACGAGCATGCGGGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATACGCAAGTCGGGGATCGGTCAT
778 AC-A--A-GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGG
* * * *
15391634 GTCCCACTCCATGTGCTGTCGATCCTGCTGCCACAACCCTCGGTCCGGTCTA
839 GTCCCCCTCCATGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCA
* * * *
15391686 ATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACAAGTGGGCG
1 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCG
15391743 GGTGTGTGTG
Statistics
Matches: 7077, Mismatches: 840, Indels: 475
0.84 0.10 0.06
Matches are distributed among these distances:
876 130 0.02
877 2 0.00
879 26 0.00
880 147 0.02
881 2 0.00
882 2 0.00
883 3 0.00
884 3 0.00
885 85 0.01
886 77 0.01
887 78 0.01
888 348 0.05
889 113 0.02
890 683 0.10
891 101 0.01
892 5 0.00
893 70 0.01
894 190 0.03
895 974 0.14
896 419 0.06
897 16 0.00
898 297 0.04
899 15 0.00
900 64 0.01
901 160 0.02
902 5 0.00
903 101 0.01
904 430 0.06
905 145 0.02
906 374 0.05
907 335 0.05
908 102 0.01
909 1 0.00
910 13 0.00
911 97 0.01
912 574 0.08
913 209 0.03
915 2 0.00
916 52 0.01
917 259 0.04
918 80 0.01
919 72 0.01
920 9 0.00
921 30 0.00
922 21 0.00
923 29 0.00
924 63 0.01
925 10 0.00
926 1 0.00
928 1 0.00
929 52 0.01
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (890 bp):
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGAGCACTAC
GCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTG
CGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCT
CAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCTGATCGCCGGAACC
CCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATACG
GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACT
GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACA
AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCC
TCCATGTGCTGCCGATCCTGCTACCACAACCCTCGGTCCGGTCCA
Found at i:15391528 original size:26 final size:26
Alignment explanation
Indices: 15391499--15391551 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15391489 TCGGTCCGAT
*
15391499 CTTAGATTAGGAATGAACTCCGTATG
1 CTTAGATTAGGAATGAACTCCATATG
*
15391525 CTTAGATTGGGAATGAACTCCATATG
1 CTTAGATTAGGAATGAACTCCATATG
15391551 C
1 C
15391552 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.17, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGATTAGGAATGAACTCCATATG
Found at i:15392378 original size:26 final size:26
Alignment explanation
Indices: 15392327--15392379 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15392317 CCGGTCCGAT
* *
15392327 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15392353 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15392379 C
1 C
15392380 CTAAGTCAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15393401 original size:428 final size:428
Alignment explanation
Indices: 15392580--15393416 Score: 1230
Period size: 428 Copynumber: 2.0 Consensus size: 428
15392570 ACTACGCCGG
* * * * *
15392580 CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACTTTTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGCAGGTGGGTTTAGGAACATCTTCA
** * * *
15392645 TACCTCTACATGCCAATGACATTTTTATTTCTTGTAAATTCATACAATGGTCTCTTAAGCTTTCA
66 TACCTCTACATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCA
* * * *
15392710 CGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTTCGGTT
131 CGTGAAGTTTCATGGCAAGACCACTCATTTTCTATTTTTCACGATATTCAAAACTTTTTACGGTT
* * ** * *
15392775 CGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCAAAAGCTGGTAGACATGATCCTTGTA
196 CGAGATTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCCAAAAGCTGGTACACATGATCCTCGTA
* * * *
15392840 TTTTTGTTCCCTTGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATGTTGTGACCATT
261 TTTTTGTTCCCATGCAAAAAAAAATTCAACTAAAAACTCGAACTGTACAAGATGTTGCGACCATT
*
15392905 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACTTGTAAAATCTCAAA
326 TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAA
15392970 TGCTCTTTAAGAGGGTGTGCGGGCGGGCGCTATACTGA
391 TGCTCTTTAAGAGGGTGTGCGGGCGGGCGCTATACTGA
* * *
15393008 CCAGAGAGATGGGATGCGCAAGCTGTCGATCGATAGGGTGGCAGGTGGGTTTGGGAACATCTTCA
1 CCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGCAGGTGGGTTTAGGAACATCTTCA
** *
15393073 TATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCA
66 TACCTCTACATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCA
* *
15393138 TGTGAAGTTTCATGGCAAGACCACTCATTTTCTATTTTTCACGATAATT-GAAACTTTTTAC-GT
131 CGTGAAGTTTCATGGCAAGACCACTCATTTTCTATTTTTCACGAT-ATTCAAAACTTTTTACGGT
*
15393201 TCGAGATTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCCCAAA-CTTGGTACACATGATCCTCG
195 TCGAGATTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCCAAAAGC-TGGTACACATGATCCTCG
* ** * * * *
15393265 TATTTTTTTTGGCATGCACAAAAAAGTTTAACTAAAAACTCGAACTGTACAAGATTTTGCGACCA
259 TATTTTTGTTCCCATGCAAAAAAAAATTCAACTAAAAACTCGAACTGTACAAGATGTTGCGACCA
* *
15393330 TTTGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
324 TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTC-
*
15393395 AAATGCTCTTTAAGGGGGTGTG
388 AAATGCTCTTTAAGAGGGTGTG
15393417 AGTTCTCAAG
Statistics
Matches: 362, Mismatches: 44, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
426 1 0.00
427 172 0.48
428 187 0.52
429 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.20, T:0.33
Consensus pattern (428 bp):
CCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGCAGGTGGGTTTAGGAACATCTTCA
TACCTCTACATGCCAATGACATTTTTATGGCTTGTAAATTCATACAATGGACCCTTAAGCCTTCA
CGTGAAGTTTCATGGCAAGACCACTCATTTTCTATTTTTCACGATATTCAAAACTTTTTACGGTT
CGAGATTTTTTAAAATTTTTTCAGAAAAAGTTTTGGCCCAAAAGCTGGTACACATGATCCTCGTA
TTTTTGTTCCCATGCAAAAAAAAATTCAACTAAAAACTCGAACTGTACAAGATGTTGCGACCATT
TGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGACAGCAAACCTGTAAAATCTCAAA
TGCTCTTTAAGAGGGTGTGCGGGCGGGCGCTATACTGA
Found at i:15394446 original size:26 final size:26
Alignment explanation
Indices: 15394417--15394469 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15394407 CCGGTCTGAT
15394417 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15394443 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15394469 C
1 C
15394470 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15397129 original size:26 final size:26
Alignment explanation
Indices: 15397093--15397145 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15397083 CCGGTCCGAT
15397093 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15397119 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15397145 C
1 C
15397146 CTAAGTGAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15397269 original size:888 final size:891
Alignment explanation
Indices: 15394065--15398910 Score: 7534
Period size: 902 Copynumber: 5.4 Consensus size: 891
15394055 CAAAAAAATT
* *
15394065 CAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTCAGACA
1 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
* *
15394130 CTTTAGTGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
66 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
15394195 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
131 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
*
15394260 ACGGACACCCCCCCAGCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGAT
196 ACGGACACCCCCCCAGCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCTGACGAT
15394325 GCTCTGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGATTCCAGCATGTG
261 GCTCTGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGATTCCAGCATGTG
*
15394390 CTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
326 CTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
*
15394455 ATGAACTCTGTATGCCTAAGTCAACCCACGAAAC-AAGCGTGCGGGCGCTCATCCAGGCAGAGGG
391 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAA-CGTGCGGGCGCTCAGCCAGGCAGAGGG
*
15394519 GTGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGTCGATCTTGCTGCTGCAA
455 GTGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAA
*
15394584 CCCTCAGTCCGGTCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
520 CCCTCGGTCCGGTCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACG
* *
15394649 AGCGGGCGGGCGGGCGGGCGGGCACAACGTCGGCAAGAGAGACAAGATGCGCAAGCCGTGGATCG
585 AGCGGGCGGGCGGGCGGGC-GGCACAACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCG
*
15394714 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAGTTATGCTTGCCAATGCCATTTTTATGGCT
649 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCTTGCCAATGCCATTTTTATGGCT
15394779 TGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGCTTTT
714 TGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTT
15394844 -TATTTTTCACGATTTTTCAAACTTTTTACGGTTCTAAATTTTTTAAAATTTTTTCGGAAGGAGT
778 CTATTTTTCACGATTTTTCAAACTTTTTACGGTTCTAAATTTTTTAAAATTTTTTCGGAAGGAGT
* *
15394908 TTTGGCCCCAAACTTGGTAGACATGATGCTTGTTTTTTTGTTGGCATGCATAAAACAA
843 TTTGGCCCCAAACATGGTAGACATGATCCTTGTTTTTTTGTTGGCATG---------A
*
15394966 TTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
1 --CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
15395031 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
64 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
15395096 TTGAGGTTTGATGA-GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
129 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* * * *
15395160 GTGCGCACACCCCCCGC-CCCCCCCGATCG-CTGG-AACCCTAATGCCGCCGATCAGGTTCTCTG
194 GTACGGACACCCCCC-CAGCCCCCCGATCGTC-GGAAACCC-AATGCCGCCGGTCAGGTTCTCTG
* * * * * **
15395222 ACGATGCTCCGACGATGGTGCCCC-GATGAAGAAAAATGTGGCACCGGCACATGCCCGAGCCCAG
256 ACGATGCTCTGGCGATGGTGCCCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGATTCCAG
* * * * * * * *
15395286 TATGTGCTGCCATAACCCTCGTTCTGGTTTGATGTTAGACTGGGAATGAACTCCATATGCTTAGA
320 CATGTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGA
* * * * **
15395351 TTAGGAATGAACTCCGTATGCCTAAGTCAACCCATGAATTGAACGTGCGGGCGCTCAGCC-GGCC
385 CTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCAGG-C
** ** * * * * *
15395415 AGAGGGGCAGGATGCGCAAGCCAAGGATCGGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGTTG
449 AGAGGGGTGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCTTGCTG
* * * * * * * *
15395480 CCGCCACCCTCAGTCTGGTCCAATCTCAGACTGGGAATGATCTCCGTATGCCTAAGCCAACCGAC
514 CTGCAACCCTCGGTCCGGTCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGAC
* * * * *
15395545 GAAACGAGCGGGCGGGCGGGC---AGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTG
579 GAAACGAGCGGGCGGGCGGGCGGGCGGCACAACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTG
* * *
15395607 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTA
644 GATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCTTGCCAATGCCATTTTTA
* * *
15395672 TGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGACAACTCG
709 TGGCTTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG
* ** *
15395737 TTTTCTATTTTTCATGATTTTTCAAAAATTTTACGGTT-TACGATTTTTTAAAATTATTTT-GGA
774 TTTTCTATTTTTCACGATTTTTCAAACTTTTTACGGTTCTA-AATTTTTTAAAATT-TTTTCGGA
15395800 AGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTTTTTTTGTTGGCATG-
837 AGGAGTTTTGGCCCCAAACATGGTAGACATGATCCTTGTTTTTTTGTTGGCATGA
* * * *
15395854 CA-CTAAAAACTCTAAGTGTACAAGATTTGGTGATCATTTGAAAAACGTGTCCCCATTTTAGACA
1 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
* * *
15395918 CTTTAATTGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTC
66 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
15395983 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
131 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
*
15396048 ACGGACACCCCCCCAGCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCCGACGAT
196 ACGGACACCCCCCCAGCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCTGACGAT
15396113 GCTCTGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGATTCCAGCATGTG
261 GCTCTGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGATTCCAGCATGTG
* * * *
15396178 CTGTCGTAACGCTCGGTCCGGTCCGATCTTAGATTGGGAATGAACTCCATATGCTTAGACTGGGA
326 CTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
** *
15396243 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGGGTGCGGGCGCTCAGCCAGGCAGAGGTG
391 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCAGGCAGAGGGG
* *
15396308 TGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTACATGCTGCCGATCTTGCTGCTGCAAC
456 TGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAAC
*
15396373 CCTCGGTCCGATCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
521 CCTCGGTCCGGTCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
15396438 GCGGGCGGGCGGGCGGGCGGTCACAACATCGGCCAGAGAGACGAGATGCGCAAGCCATGGATCGA
586 GCGGGCGGGCGGGCGGGCGG-CACAACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGA
* *
15396503 TAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTATGCTTGCGAATGCCATTTTTATGGCTT
650 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCTTGCCAATGCCATTTTTATGGCTT
15396568 GTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGCTTTT-
715 GTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTC
*
15396632 TATTTTTCACGATTTTTCAAACTTTTTACGGTTCTAAATTTTTTAAAATTTTTTTGGAAGGAGTT
779 TATTTTTCACGATTTTTCAAACTTTTTACGGTTCTAAATTTTTTAAAATTTTTTCGGAAGGAGTT
15396697 TTGGCCCCAAACATGGTAGACATGATCCTTGTTTTTTTGTTGGCATG-
844 TTGGCCCCAAACATGGTAGACATGATCCTTGTTTTTTTGTTGGCATGA
* *
15396744 CA-CTAAAAACTCGAAGTGTACAAGATTTTGTGATCATTTGAAAAACGTGT-CCCATTTTAGACA
1 CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
* * *
15396807 CTTTAATTGCTACTGGAAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTTTGAGTTCTC
66 CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
15396872 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG-ACCAGCACCCATCACACATCATGT
131 GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
15396936 ACGGACACCCCCCCAGCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCTGACGAT
196 ACGGACACCCCCCCAGCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCTGACGAT
15397001 GCTCTGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGATTCCAGCATGTG
261 GCTCTGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGATTCCAGCATGTG
* * *
15397066 CTATCGTAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGA
326 CTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
* *
15397131 ATGAACTCTGTATGCCTAAGTGAACCCACGAAACGAACGTGCGGGCGCTCAGCCTGGCAGAGGGG
391 ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCAGGCAGAGGGG
* *
15397196 TGGGATGCGCAAGCTGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCTTGCTACTGCAAC
456 TGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAAC
*
15397261 CCTCGGTCCGGTCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGA
521 CCTCGGTCCGGTCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
* *
15397326 --------GCGGGC--G-GGCACAACGTCGGCAAGAGAGACAAGATGCGCAAGCCGTGGATCGAT
586 GCGGGCGGGCGGGCGGGCGGCACAACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGAT
*
15397380 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCTTGCCATTGCCATTTTTATGGCTTG
651 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCTTGCCAATGCCATTTTTATGGCTTG
*
15397445 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
716 TAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
** * *
15397510 TTTTTCACGATTTTAGAAACTTTTTAAGGTTC-AAGA-TTTTTAAAATTTTTTCGGAAGGATTTT
781 TTTTTCACGATTTTTCAAACTTTTTACGGTTCTAA-ATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * * * *
15397573 TGGCCCCAAACGTGATAGACATGATCCTTCTATTTTTATTGGCATGCACAAAAAAA
845 TGGCCCCAAACATGGTAGACATGATCCTTGTTTTTTTGTTGGCATG---------A
*
15397629 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTTTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
1 --CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
** *
15397694 CACTTTAGGGGCTACTGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
64 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
* *
15397759 TTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACATATCAT
129 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
* * *
15397824 GTATGGAAACCCCCCCAGCCCCCCGATCGTCGGAAACCCAATGCCGTCGGTCAGGTTCTCTGACG
194 GTACGGACACCCCCCCAGCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCTGACG
15397889 ATGCTCTGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGATTCCAGCATG
259 ATGCTCTGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGATTCCAGCATG
*
15397954 TGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGG
324 TGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGG
*
15398019 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCAGGCAGAGG
389 GAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCAGGCAGAGG
15398084 GGTGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCA
454 GGTGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCA
15398149 ACCCTCGGTCCGGTCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
519 ACCCTCGGTCCGGTCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC
* *
15398214 GAGCGGGCGGGCGGGCGGGCGGGCACAACATCGGCCAGAGAGACGAGATGCGCAAGCCATGGATC
584 GAGCGGGCGGGCGGGCGGGC-GGCACAACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATC
*
15398279 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCTTGCGAATGCCATTTTTATGGC
648 GATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCTTGCCAATGCCATTTTTATGGC
* *
15398344 TTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGACAACTCGTTTT
713 TTGTAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
*
15398409 CTATTTTTCACGATTTTTCAAACTTTTTACGGTTCTAAATTTTTTAAAATTTTTTCGGAAGGCGT
778 CTATTTTTCACGATTTTTCAAACTTTTTACGGTTCTAAATTTTTTAAAATTTTTTCGGAAGGAGT
*
15398474 TTTGGCCCCAAACTTGGTAGACATGATCCTTG-TTTTTTGTTGGCATGCACAAAACAA
843 TTTGGCCCCAAACATGGTAGACATGATCCTTGTTTTTTTGTTGGCATG---------A
15398531 TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
1 --CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGA
15398596 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
64 CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
*
15398661 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
129 TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCAT
** * * * * * *
15398726 GTGTGCACA-CCCCCCAGCCCCCCGATCGTCGGAACCCCAATGCCGCTGGTCAGGTTCAC-CAGT
194 GTACGGACACCCCCCCAGCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCTGA-C
* ** * **
15398789 GATTCTCCAGCGATGGTGCCCC-GACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCA
258 GATGCTCTGGCGATGGTGCCCCAG-CGAAGAAAAATGCGGCACCAGCACATGCCCGATTCCAGCA
** * * * *
15398853 TGTGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGATTGAACTCCGTATGC
322 TGTGCTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
15398911 CTAAGCCAAC
Statistics
Matches: 3626, Mismatches: 262, Indels: 112
0.91 0.07 0.03
Matches are distributed among these distances:
875 72 0.02
876 192 0.05
877 2 0.00
878 1 0.00
880 6 0.00
885 131 0.04
886 391 0.11
887 11 0.00
888 442 0.12
889 235 0.06
890 702 0.19
891 6 0.00
897 6 0.00
898 261 0.07
899 4 0.00
900 3 0.00
901 162 0.04
902 806 0.22
903 193 0.05
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (891 bp):
CAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACA
CTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC
GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGT
ACGGACACCCCCCCAGCCCCCCGATCGTCGGAAACCCAATGCCGCCGGTCAGGTTCTCTGACGAT
GCTCTGGCGATGGTGCCCCAGCGAAGAAAAATGCGGCACCAGCACATGCCCGATTCCAGCATGTG
CTGTCGTAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAACGTGCGGGCGCTCAGCCAGGCAGAGGGG
TGGGATGCGCAAGCCGGGGATCGGTCAGGTCCCCCTCTGCGTGCTGCCGATCTTGCTGCTGCAAC
CCTCGGTCCGGTCCAATTTTAGACTAGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGA
GCGGGCGGGCGGGCGGGCGGCACAACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGAT
AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTATGCTTGCCAATGCCATTTTTATGGCTTG
TAAATTCATAAAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA
TTTTTCACGATTTTTCAAACTTTTTACGGTTCTAAATTTTTTAAAATTTTTTCGGAAGGAGTTTT
GGCCCCAAACATGGTAGACATGATCCTTGTTTTTTTGTTGGCATGA
Found at i:15398019 original size:26 final size:26
Alignment explanation
Indices: 15397983--15398035 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15397973 CCGGTCTGAT
15397983 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
15398009 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15398035 C
1 C
15398036 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15400519 original size:26 final size:26
Alignment explanation
Indices: 15400467--15400519 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15400457 CTGGTCCGAT
* **
15400467 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCACATG
*
15400493 CTTAGACTAGGAATGAACTCTACATG
1 CTTAGACTAGGAATGAACTCCACATG
15400519 C
1 C
15400520 CTAAGTGAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCACATG
Found at i:15401395 original size:26 final size:26
Alignment explanation
Indices: 15401359--15401411 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15401349 CTGGTTCGAT
15401359 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15401385 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15401411 C
1 C
15401412 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15402268 original size:26 final size:26
Alignment explanation
Indices: 15402232--15402284 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15402222 CTGGTCCAAT
15402232 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15402258 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15402284 C
1 C
15402285 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15402480 original size:4 final size:4
Alignment explanation
Indices: 15402465--15402503 Score: 51
Period size: 4 Copynumber: 9.8 Consensus size: 4
15402455 GATGAAACTA
* * *
15402465 GCGG GTGG GCGG GCGG GCGG GCAG GCGG ACGG GCGG GCG
1 GCGG GCGG GCGG GCGG GCGG GCGG GCGG GCGG GCGG GCG
15402504 TGCACTACTC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
4 29 1.00
ACGTcount: A:0.05, C:0.23, G:0.69, T:0.03
Consensus pattern (4 bp):
GCGG
Found at i:15403178 original size:26 final size:26
Alignment explanation
Indices: 15403142--15403194 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15403132 CTGATTCGAT
15403142 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15403168 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15403194 C
1 C
15403195 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15404317 original size:904 final size:898
Alignment explanation
Indices: 15398855--15405024 Score: 7733
Period size: 904 Copynumber: 6.9 Consensus size: 898
15398845 GCCCAGCATG
* * * * *
15398855 TGCTACCGCAACCCTCAGTCCGGTCTGATCTTAGACTAGGATTGAACTCCGTATGCCTAAGCCAA
1 TGCTACCACAACCCTCAGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
15398920 CCGATGAAACGAGCGGGCGGGCA-GACGGGCACTATG-CAGGCCAGAGAGACAGGATGCGCAAGC
66 CCGACGAAACGAGCGGGCGGGGAGGGCGGGCACTACGCCA-GCCAGAGAGACGGGATGCGCAAGC
* * * ** **
15398983 CGTGGATCGATAGGGTGGTATGTGGGTTTAGGTACATCGTCATATTTCTGGGTGCCAATGATATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* *
15399048 TTTATGGTTTGTAAATTCATACAATGGTCCCATAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
15399113 CTCATTTTCTATTTTTCACTATTTTCAAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTTG
260 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG
* * * *
15399178 GAAGGAGTTTTGGCCCCAAACTTGTTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAA
325 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* *
15399243 ATTCAGCTAAAAACTCGAAGTGTTCAAGATTTTG-GACCATTTGAAAAAAGTGTCCCAATTTCAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
* *
15399307 ACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTG
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
15399372 CTCGAGGTTTGATGAGGGATAGAGGGCCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCA
520 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * ** *
15399437 TGTGCGCACACCCCCCCGGCGCCCCCAACCG-TCAGAACCAAAATGTCGTGGGTCAGGTTCTCC-
585 TGTGCGCACACCCCCCCGAC-CCCCCGATCGCT-GGAACCCCAATGTCGTCGGTCAGGTTCTCCG
* * * *
15399500 GA---------GATGGTTCCCCAACGAAGAAAAATGCGGCACCAGCACATACCCGAGGCCAGCAT
648 GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCAT
* * * * * * *
15399556 GTGCTGGCACAACCCTCGGTCTGGTCTGATCTTAGATTGGGAATGAACTCCATATGCTTACAATG
713 GTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTG
* * **
15399621 GGAATGAACT-TCGTATGCCTAAGTCAACCCACAAAACGAGTGTGCGGGCGCTCAGTTGGCCAGA
778 GGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * * * * *
15399685 GGGGCGGGATGCGCAAGCCGGTGATAGGCCGGGTCCCCCTCTGCGTGTTGCCAATCC
842 GGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
** * * * *
15399742 TGCTACCGTAACCCTCATTCTGGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAAGCCAA
1 TGCTACCACAACCCTCAGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
15399807 CCGATGAAACGAGCGGGC-----GGGCGGGCAGTACTCC-GACCAGAGAGACGGGATGCGCAAGC
66 CCGACGAAACGAGCGGGCGGGGAGGGCGGGCACTACGCCAG-CCAGAGAGACGGGATGCGCAAGC
* *
15399866 CGTGGATCGATAGGGTGGTAGGTGGGTTTACGCACATCTTCATATTTTTGCATGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
15399931 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* *
15399996 CTTG-TTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCAGGA-TTTTTAAAATTTTTTCG
260 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG
* * * * * *
15400059 GAAGGAGTTTTAGCTCTAAACTTGGTAGACGTGATGCTTGTATTTTTGTTGGCATGCATAAAAAA
325 AAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
* * *
15400124 ATTCAACTAGAAACTCGAAGTGTACAAGATTTTGTAACCATTTGAAAAAAGTGTCCCCATTTCAG
390 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
15400189 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTT
455 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* * * * * *
15400254 GTCAAGGATTGATGAGGGATAGGGGACAAATATAAGGGCCAAGTACCAGCACCCACCGCACATCA
520 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * *
15400319 TGTGCACACA-CTCCTCGACCCCCCCGATCG-TCGGAACCCCAATGCCGTCGGTCAGG---T---
585 TGTGCGCACACCCCCCCGA-CCCCCCGATCGCT-GGAACCCCAATGTCGTCGGTCAGGTTCTCCG
* * * *
15400376 --T-CTCCGGCAATGGTGCCCC-ACCGAAGAAAAATGTGACACCAGCACATG-CCGAGCACAGCA
648 GATGCTCCGGCGATGGTGCCCCGA-CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCA
* * *
15400436 TGTACTACCGTAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
712 TGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT
* ** * * ** *
15400501 AGGAATGAACTCTACATGCCTAAGTGAACCCACAAAACGAGCGTTTGGGCGCTCAGCCGACCAGA
777 GGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGA
* * *
15400566 GGGGCGGGATGCGTAAGCCAGGGATCGGCCGGGT---CCTCTACGTGCTGCCGATCC
842 GGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
* * * *
15400620 TGCTACCACAACCCTCAGTCCGGTCCA-ATCTTAAATTGGGAATGAACTCCGTATGCCTACGCCA
1 TGCTACCACAACCCTCAGTCTGGT-CAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * *
15400684 ATCGACGAAACAAGCGGGC---GA--GCGGGCACTACGCCGGCCAGAGAGACGAGATGCGTAAGC
65 ACCGACGAAACGAGCGGGCGGGGAGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGC
*
15400744 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * *
15400809 TTTATGGCTTGTAAATTCATACAATGGTCCCCTAAGCCTTCATGTGAAGTTTCATGGCAAGATGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * *
15400874 CTCGTTTTCTATTTTTCACGATTTTGGACACTTTTTGCGG-TCTGAGATTTTTTAAAATTTTTTC
260 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAG-GATTTTTTAAAATTTTTTC
* * *
15400938 GGAAGGAGTTTTGACCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAT
324 GAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* * * * *
15401003 AATTCAGCTAAGAACTCGAAGTGTACAAGATCTTATGACCGTATGAAAAAAGTGTCCCCATTTCA
389 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
*
15401068 GACACTTTAATGGCTACTGGCAGCAAAACTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
454 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
15401133 TCTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
519 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * *
15401198 ATTTGCGCACACCCCTCGGCCCCCCCGATC-ATCGGAACCCCAATGTGGCCGGTCAGGTTCTCCG
584 ATGTGCGCACACCCCCCCGACCCCCCGATCGCT-GGAACCCCAATGTCGTCGGTCAGGTTCTCCG
* * * * *
15401262 ATGATGCTCCGGTGATGGTGCCCCAATGAAGAAAAATGCGACACCAGCACATGCCTGAGCCCAGC
648 --GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGC
* * * *
15401327 ATGTGCTACCGTAACCCTCGATCTGGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
711 ATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGAC
* ** *
15401392 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGTGTATGGGCGCTAAGCCGGCCAG
776 TGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAG
* *
15401457 AGGGGCGGGATGCGCAAG-CTAGGGATCGGCC-GG-----------GT-C--CCGATCT
841 AGGGGCGGGATGCGCAAGTC-GGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
** * * *
15401500 TGCTACCACAACCCTCAGTCCAGTCCA-ATCTTAAACTGGGAATCAACTTCGTATGCCTAAGCCA
1 TGCTACCACAACCCTCAGTCTGGT-CAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * *
15401564 ACCGACGAAACAAGCGGGC-----GGGCGGGCACTACGTCAGCCAGAGAGACGAGATGCGCAAGC
65 ACCGACGAAACGAGCGGGCGGGGAGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGC
*
15401624 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACATCTTCATATTTCTGCATGCCAATGCCATT
130 CGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATT
* * * *
15401689 TTTATGGCTTGTAAATTCATACAACGGTCCCCTAAGCCTCCACGTGAAGTTTCATGGCAAGATGA
195 TTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGA
* * * * * * **
15401754 CACGTTTTCTATTTTTCATGATTTTTGAAACATTTTGCGATTTGGGATTTTTTAAAATTTTTTC-
260 CTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG
* * * * * * * *
15401818 AGAAGGTGTTGTGGCCCCAAACTTCATGTAGACATGATCCCTGTATTTTTTTTGGCACGTACAAA
325 A-AAGGAGTTTTGGCCCCAAACTT--GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
15401883 AAAATTCAACTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
387 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
15401948 C-GAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTG
452 CAG-ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* * *
15402012 AGTTCTCAAGGATTGATGAGGGATAGGGGGCCAATATAAGGGCGAAGTACCAGCACCCATCGCAC
516 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * * *
15402077 ATCATGTGTGCATACCCCCCCCGGCCACCCCGATCGCCGGAACCCCAAT-TCCGTCGGTCAGGTT
581 ATCATGTGCGCACA-CCCCCCCGACC-CCCCGATCGCTGGAACCCCAATGT-CGTCGGTCAGGTT
* ** *
15402141 CTCC-GA--------CGATGGTACCCCGGTGAAGAAAAATGCGGCACCAGCACAAGCCCGAGCCC
643 CTCCGGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * *
15402197 AGCATGTGCTGTCGCAAACCTCGGTCTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTA
708 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* *
15402262 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTTAGCAGGC
773 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* ** * * * *
15402327 CAGAGGGGTGGGATGCAAAAGTCGGGGATAGGTCGGGTCCCCCTCTGCGTGCTGTCGATCC
838 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
**** * * * *
15402388 TGCTACTGTGACCCTCGGTCTGATCCA-ATCTTAGACTGGGAATGAGCTCCATATGCCTAAGCCA
1 TGCTACCACAACCCTCAGTCTGGT-CAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * *
15402452 ACTGATGAAACTAGCGGGTGGGCGGGCGGGCGGGCAGGCGGACGGGCGGGCGTGCACTACTCC-G
65 ACCGACG-AA--A-------------CGAGCGGGC-GG-GGA-GGGC--G-G-GCACTACGCCAG
* * *
15402516 ACCAAAGTGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
107 -CCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTC
15402581 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
171 ATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTC
* * * * * *
15402646 ACGTGAAGTTTCATGGCAAGACAACTTGTTTTCTTTTTTTCACGAATTTCAAAAATTTTTACGGT
236 ACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGT
* * * *
15402711 TCAGGAATTTTTAAAATTTTTT----TGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTTT
301 TCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGT
* * * *
15402772 ATTATTGTTGGCATGCACAAAAATATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCAT
366 ATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCAT
15402837 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
431 TTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAA
* * * *
15402902 AAGCTCTTCAAGGGGGTGTGAGTTCTCGAGGTTTTAAGAGGGATAGGGGGCCAATATAAGGGCCA
496 ATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCA
* * *
15402967 AATACCAGCACCCAAT-GCACATCATGTGCGCACAACCCCCCCGACCCCCCCGATCACCGGAACC
561 AGTACCAGCACCC-ATCGCACATCATGTGCGCAC-ACCCCCCCGA-CCCCCCGATCGCTGGAACC
* * *
15403031 CCAATGTCGTCGGTCAGGTTCTCC-G--G-T-----GATGGTGCCCGGATGAAGAAAAATACGGC
623 CCAATGTCGTCGGTCAGGTTCTCCGGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGC
* * * * * *
15403087 ACTAGCCCATACCCGAGCCTAGCATGTGCTGCCGCAACCCTCGGTCTGATTCGATCTTAGACTGG
688 ACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGG
*
15403152 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCATGAAACGAG
753 GAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG
* * * * * * *
15403217 CGTGCGGGCGCTTAGCCGACAAGAGGGGCGGGATGCGCAAGTCGGCGATCGACTGAGTCCCCCTC
818 CGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTC
15403282 T--GTGTCTTGCCGATCC
883 TACGTG-C-TGCCGATCC
* * * * *
15403298 TGCTGCCACAACCCTCAGTCTGATCTGATCATAGACTGGGAATGAACTCCGTATGCCTAAGCCTA
1 TGCTACCACAACCCTCAGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
15403363 CCGACGAAACGAGCGGGCAGGCCGGTGGGCGAGCACTACGAC-GACCAGAGAGACGGGATCCGTA
66 CCGACGAAACGAGCGGGC-GG--GGAGGGCGGGCACTACGCCAG-CCAGAGAGACGGGATGCGCA
* * ** *
15403427 AGCCGTGGATCGATAGGATGGTAGGAGGGTTTAGGCACATCTTCATATTTCTGTGTCCCAATGCC
127 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCC
*
15403492 ATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG-
192 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * **
15403556 CTGACTCGTTTTCTATTTTTCATGATTTTCGAAACCTTTTACGGTTTGGGATTTTTTAAAATTTT
257 C-GACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTT
*** *
15403621 TTCGAAAGGAGTTTTGGAAACAAACTTCGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
321 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
*
15403686 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGCGACCATTTGAAAAAAGTGTCCCCATT
386 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* * *
15403751 TCAAACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTTAAATGATCTTTAAGGGGGTGTG
451 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
* *
15403816 AGTTCTCGAGGTTTGATGAGGGATAAGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCAC
516 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
*
15403881 ATCATGTGCGCACACGCCCCCCGACCCCCCGATCGCTGGAACCCAAATGTCGTCGGTCAGGTTCT
581 ATCATGTGCGCACAC-CCCCCCGACCCCCCGATCGCTGGAACCCCAATGTCGTCGGTCAGGTTCT
*
15403946 CCGGTGATGCTCCGGCGATGGTGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
645 CC-G-GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* * * *
15404011 AGGATGTGCTGCTGCAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
708 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * * *
15404076 GATTGGGAATGAACTCCGTTTGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAACCGGC
773 GACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * * *
15404141 CAAAGGGGCAGGATACGCAAGTCGGGGATCGACTGGGTCCCCCTCTACGTGCTGTCGATCC
838 CAGAGGGGCGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
* * **
15404202 TACTGCCACAACCCTTGGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
1 TGCTACCACAACCCTCAGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * **
15404267 GCTACGACACGAGCGGGCGGGTGGATGGGCAGGCACTACGCCAGCCAGAGAGACAGGATATGCAA
66 CCGACGAAACGAGCGGGC-GG-GGA-GGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAA
* *
15404332 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCACATTTCTGCGTGCCAATGCCA
128 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCA
*
15404397 TTTTTATGGCTTTTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
193 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** * * *
15404462 GACTTGTTTTCTATTTTTTACGATTTTTTAAACATTTTACGATTCAAGATTTTTTAAAATTTTTT
258 GACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTT
* * * *
15404527 C-AGAAGGAGTTTTGTCCCCAAACTTGGTATACGGGATCCTTGTATTTTT-TTGCCATGCACAAA
323 CGA-AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
15404590 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
387 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
15404655 CAGACACTTTAATGGCTACTAGTAGCAAACTTGTAAAATCTCAAATGCTTTTTAATGGGGTGTGA
452 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
15404720 GTTCTCGAGGTTTGATAAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
517 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* ** * *
15404785 TCATGTGCGCACACCCCCCTCGGCCCCCCCGATCGCCCGAACCCCAATGCCGCCGGTCAGGTTCT
582 TCATGTGCGCACACCCCCC-C-GACCCCCCGATCGCTGGAACCCCAATGTCGTCGGTCAGGTTCT
*
15404850 CCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGCACATGCCCGAGCCC
645 CC-G-GATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCC
* **
15404915 AGCATGTGCTGCCGCAACCCTCGATCTGGTCTAATCTTAGACTGGGAATGAACTCTC-TATGCTT
708 AGCATGTGCTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTC-CGTATGCTT
* * * * * *
15404979 AGAGTGGGAATGAACTCCGCATGCCTAAGCCAACCGATGAAACGAG
772 AGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAG
15405025 TGGGCAGGCG
Statistics
Matches: 4625, Mismatches: 526, Indels: 247
0.86 0.10 0.05
Matches are distributed among these distances:
873 187 0.04
874 3 0.00
878 249 0.05
879 36 0.01
880 612 0.13
881 297 0.06
882 454 0.10
883 164 0.04
884 35 0.01
885 2 0.00
886 1 0.00
887 76 0.02
888 61 0.01
889 3 0.00
890 203 0.04
891 45 0.01
892 157 0.03
893 44 0.01
894 265 0.06
895 3 0.00
896 1 0.00
898 1 0.00
899 1 0.00
902 5 0.00
903 214 0.05
904 732 0.16
905 4 0.00
906 3 0.00
907 1 0.00
908 3 0.00
909 4 0.00
910 528 0.11
911 7 0.00
912 21 0.00
914 1 0.00
915 2 0.00
916 200 0.04
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (898 bp):
TGCTACCACAACCCTCAGTCTGGTCAGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGCGGGGAGGGCGGGCACTACGCCAGCCAGAGAGACGGGATGCGCAAGCC
GTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTT
TTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAC
TCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGA
AAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAA
TTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGA
CACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTC
TCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCAT
GTGCGCACACCCCCCCGACCCCCCGATCGCTGGAACCCCAATGTCGTCGGTCAGGTTCTCCGGAT
GCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTG
CTGCCGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGA
ATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGG
CGGGATGCGCAAGTCGGGGATCGGCCGGGTCCCCCTCTACGTGCTGCCGATCC
Found at i:15405713 original size:26 final size:26
Alignment explanation
Indices: 15405677--15405729 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15405667 CTGATCTGAT
15405677 CTTAGACTGGGAATGAACACCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
*
15405703 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACACCGTATG
15405729 C
1 C
15405730 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACACCGTATG
Found at i:15408360 original size:26 final size:26
Alignment explanation
Indices: 15408320--15408372 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15408310 CTGGTCTGAT
15408320 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
*
15408346 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
15408372 C
1 C
15408373 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:15410966 original size:26 final size:26
Alignment explanation
Indices: 15410937--15410987 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15410927 TTGATCCGAT
*
15410937 CTTAGACTGGGAATGAACTCCGTATA
1 CTTAGACTAGGAATGAACTCCGTATA
15410963 CTTAGACTAGGAATGAACTCCGTAT
1 CTTAGACTAGGAATGAACTCCGTAT
15410988 GCCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATA
Found at i:15411841 original size:26 final size:26
Alignment explanation
Indices: 15411812--15411864 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15411802 CCGATCTGAT
*
15411812 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15411838 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15411864 C
1 C
15411865 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15412745 original size:26 final size:26
Alignment explanation
Indices: 15412716--15412767 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15412706 CCGGTCTGAT
15412716 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15412742 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15412768 TCTAAGTCAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15413660 original size:26 final size:26
Alignment explanation
Indices: 15413608--15413660 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15413598 CTGGTCCGAT
* * * *
15413608 CTTAGACTGGGAATGAACTTCGTATG
1 CTTACACTAGGAATGAACTCCGCATG
15413634 CTTACACTAGGAATGAACTCCGCATG
1 CTTACACTAGGAATGAACTCCGCATG
15413660 C
1 C
15413661 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTACACTAGGAATGAACTCCGCATG
Found at i:15413954 original size:892 final size:890
Alignment explanation
Indices: 15409181--15419838 Score: 12977
Period size: 904 Copynumber: 12.0 Consensus size: 890
15409171 CCGGTTCGAT
* * ** *
15409181 CTTATACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCATGCGGATGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * *
15409246 TGGTCAGAGGGGTGAGATGCGCAAGTCAGGGATCGGTTGGGTCCCCCTCTGCATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* **
15409311 TGCTGCCGCAACCCTTGGTCTAGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* ** * *
15409376 CCGACGAAACGAG-GGGCGGGCGGGTGGGCGGGCACTACGCTGGCCAGAGAGACAGGATGCGCAA
196 CCGACGAAACGAGCGGGAGGGCGGACGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* *
15409440 GCTGTGGATCGATAGGGTGGTATGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * * *
15409505 TTTTAATGGCTTGTAATTTCATACCATGGTCCCTTAAG-CTTCACGTGAAATTTCATGGCAAGAT
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* ** **
15409569 GACTCGTTTTCTATTTTTCATGATTTTCAAAACTTTTTATGGTTCGGGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTT
* * * *
15409634 TAGAAAGAGTTTTTGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGGACAAAA
454 TGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* *
15409699 AAATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
*
15409764 AGACACTTGAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
* * *
15409829 TTTTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCACCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* ** * *
15409894 CATGTGTGCACACCCCCCGGCCCATCCGATCGCCGAAACCCCAATGCTGTCGGTCAAGTTCCCCG
714 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTC-A-------G
* ** ** * * *
15409959 GTGATGCTCCGACGATGGTGCCTTGGTGAAGAAAAATACGGCACCAGCACATGTCCGAGCCCAGC
771 GT--T-CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGC
* * * * * * *
15410024 ATGTGCTACCACAACCCTCGGTCTGGTCTGATCTTACACTAGGAATGAACTCCATATG
833 ATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
** * * *
15410082 CTTAGACAAGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAACGTGTGGGCGCTTAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
15410147 CGGGCAGAGAGGCGGGTTGCGCAAGTCGGGGATCGGTCGAGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * *
15410212 TGCTGCCACAACCCTCGATCTGGTCTGATCTTAGACTGGGAATGAAATCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
15410277 CTGAAGAAACGAACGGGAAGGTGG--GTG-GGCACTACGTCGGCCAGAGAAACGGGATGCGCAAG
196 CCGACGAAACGAGCGGGAGGGCGGACGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * *
15410339 CCGTGGATCGATAGGGTGGTAGGTGGGTTTTGGCACATCTTCATATTTCTACATGCCAATACCAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* *
15410404 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAGGACA
326 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* ** *
15410469 ACTCGTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCAAGATTTTTCAAAATTTTTTC
391 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT-
** * * * *
15410534 CAAATGAGTTTTGGTCCCAAACTCGGTAGACGTGATCCTTTTATTTTTGTTGGCATGCACAAAAA
455 GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA
* *
15410599 AATTCAGCTAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAGAAGTGTCCCCATTTCA
520 AATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCA
* * * *
15410664 GACACTTTAATGGCTACTGGAAGCGAACCTGTAAAATCTCAAATGCGCTTTAAGGGAGTGTGAGT
585 GACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGT
*
15410729 TCTCGAGGTTTGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
650 TCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATC
* * * * * * *
15410794 ATGTGTGCATA-CCCCCTG-CCCCCTGATCGCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGA
715 ATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* * * *
15410857 CGATGGTGCCCCGGCAAAGGAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGCTGCCGC
780 CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* *
15410922 AACCCT---T--GATCCGATCTTAGACTGGGAATGAACTCCGTATA
845 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15410963 CTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACCAACGAAACGAGCATGCGGGCGCTCA--
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
15411026 AGACC--AGGGGCGGGATGCGTAAGTCGGGGATTGGTC-GGTCCCCATCTGCGTGCTGCTGAT-C
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * * *
15411087 --CT-ACGTAACCCTTGGT-CTGTC-AATCTT-GACAGGGACTGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
15411146 -CGACGAAAC-AAC-GGACGGGCGGATGGGCGAGCGCCACGTCGACCAGAG-GATGGGATGCGCA
196 CCGACGAAACGAGCGGGA-GGGCGGACGGGCG-GCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * * *
15411207 AGCCGTGGATCGATAGAGTGGTAGGTGGGTGTAGGCACATCTCCATATTTCTGCATGCCATTGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* *
15411272 ATTTTTAT-GCTTGTAAACTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCGTGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
** *
15411336 CGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTG
389 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT-
* * * * * *
15411401 TTGGTAGGAGTTTTGGCCCCAAA-TTGGTAGACATGATCCCTGTAATTTTGTTCGTATGCACAAA
453 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
15411465 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
15411530 CAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAA-GGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
15411594 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
15411659 TCATGTGCGCACACCCCCTCGGCCCTCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTC
713 TCATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTC
* * **
15411724 CGGCGATGGTGCCCCGACGAAAAAAAATGCTGCACCAGCACATGCATGAGCCCAGCATGTGCTGC
777 CGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
* * * * *
15411789 CACAACCCTTGGTCCGATCTGATCTTAGACTGGGAATGAACTCTGTATG
842 CGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * *
15411838 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCTACGAAACGAGCATGCGGGTGCTCAAC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
15411903 CGACCAGAGGGGCGGGATGCGTAAGTCGGGGATCGGTCGGATCCCCCTCTGCGTGCTACTGATTC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * ** * **
15411968 TGTTACCGTAACCCTCGGTCTGGTCCAATCATT-GACAGGGAACAAACTCCGTATGCCTAAGCCA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATC-TTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * * *
15412032 ACAGACGAAACGAAC-GGACGGGCGGATGGGCGAGCGCCACGCCGACCAGAGGGATGGGATGCGC
195 ACCGACGAAACGAGCGGGA-GGGCGGACGGGCG-GCACTACGCCGGCCAGAGAGACGGGATGCGC
* * *
15412096 AAGTCGTGGATCGATAGGATGGTAGGTGGG-TTAGGCACATCTTCATATTTCTGCGTGCCAATGC
258 AAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGC
* * * *
15412160 CATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACATAAAGTTTCATGGGAAG
323 CATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAG
* *
15412225 ACGACTCCTTTTCTATTTTTCACAATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
388 ACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* *
15412290 TTCGAAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGTATGCACAA
453 TT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAA
* *
15412355 AAAATTTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
517 AAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATT
* *
15412420 TCAGACACTTTAATTGCTACTGGCAGCAAACCTGTAAAATCTCACATGCTCTTTAAGGGGGTGTG
582 TCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTG
15412485 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
647 AGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAC
* * ** * *
15412550 ATCATGTGCGCACACCCCCCCTGGCCACCCCTATCATCGAAACCCTAATACCGCCGGTCAAGTCC
712 ATCATGTGCGCACA-CCCCCC-GGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTC-A----
* * * * *
15412615 TCCGGCGATGCTCCGACGATGGTGCCCCGATGAAGGAAAATG-TGACACCAGCACATGCCCGAGC
770 ----G-G-TTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCCCGAGC
* * * * *
15412679 CCAGTACGTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATG
828 CCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
15412742 CTTAGACTGGGAATGAACTCCGTATGTCTAAGTCAACCCACGAAAGGAGCGTGCGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * *
15412807 CGGCCAGAGGGGCGGGATGAGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCTTGCTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
** * **
15412872 TGCTGCCATAACCCTCAGTTTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * *
15412937 CTGATGAAACGAGC-GGCGGGCGGACTGGCTGGCACTACGTCGGCCAGAGAGACGGGATGCGCAA
196 CCGACGAAACGAGCGGGAGGGCGGACGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * * * *
15413001 GCTGTAGATCGATAGGGTGGTAGGTGGGATTAGGCACATCTTCATATTTCCATGTGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * *
15413066 TTTTTATGTCTTGTAAATTCATACAATGGTCCCATAAGCCTTAACGTGAAGTTTCATGGCAAGAT
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * ** *
15413131 GACTCATTTTCTATTTTTCATGATTTTCAAAACTTTTTGTGGTTCGGGATTTTTTAAAAGTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAA-TTTTT
* *
15413196 TGGAAGGCA-TTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCAAAAA
454 TGGAAGG-AGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
15413260 AAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
*
15413325 TAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTTAAGGGGGTGTG
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTC-TTTAAGGGGGTGTG
* *
15413390 AGTTC-CTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGACAAGTACCAGCACCCATTGCA
647 AGTTCTC-GAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCA
* * *
15413454 CATCATGTGCGCACACCCACCGACCCCCCCGATCGTCGAAACCCCAATGCCGCCGGTCAGGTTCT
711 CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCT
* *
15413519 CCGGCGATGGTGCCCCGGCGAACAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
776 CCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTG
* * *
15413584 CTGCAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTTCGTATG
841 CCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * * * *
15413634 CTTACACTAGGAATGAACTCCGCATGCCTAAGTCAACCCACAAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * ** * *
15413699 CGGCCAGAGGGGCGAGATGCACAAGTTGGGGATTAGTCGGGTCCCCCTCTGCATGCTACCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
**
15413764 TGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * *
15413829 CCGCCGAAACGAACGGGAGGGCGGGCGAGCGAGCGCTACGCCGACCAGAGAGACAGGATGCGCAA
196 CCGACGAAACGAGCGGGAGGGCGGACGGGCG-GCACTACGCCGGCCAGAGAGACGGGATGCGCAA
* * *
15413894 GCTGTGGATCGAT-GGGTGGTAGGTGAGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * *
15413958 TTTTTATGGCTTGTGAATTCATATAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGAT
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * *
15414023 GACTCGTTTTCTTTTTTTCACGATTTTTGAAACTTTTTACGATTCGGGATTTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
* * * * * * ** *
15414088 CGAAAGTATTTTTGGACCCAAACTTGGTACACATGATCCTTGTATGCTTCTTGGCATGCACAAAA
455 -GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * * *
15414153 AAATTCAGCTAAAAACTCGAAGTGTAAAAGTTTTTGTGAACATTTGAAAAAAGTGTCCCCATTTT
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* * * *
15414218 AGACACTTTAATGACTACTAGCAACAAACCTGTAAAATCTCAAATGCGCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
*
15414283 TTCTCGAGGTTTGATGAGGGATGGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
* * * * * *
15414348 CATGTGTGCATACCCCCCGG-CCCCCTGATCACCGGAACCCCAATGCCGCCAGTCAGGTTCTCCG
714 CATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCG
* * ** *
15414412 ACGATGGTGCCTCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTAATGCCA
779 GCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCG
* ** *
15414477 CAACCCTCGGTCCAGTTTGATCTTAGACTGGGAATGAACTTCGTATG
844 CAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* *
15414524 CTTAGGCTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
15414589 AGGCCAGACGGGCGGGATGCGCAAGCCGAGGATTGGTCGGGTCCCCATCTGCGTGTTGCTGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * * * *
15414654 TACTGCCGCAACCCTCAGTCCGATCTGACCTTAGACTGCGAATGAACTCCGTATGCCTCAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
15414719 CCGACGAAACGAGCGGGCGGG-TG--GGGAGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
196 CCGACGAAACGAGCGGGAGGGCGGACGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* * * *
15414781 CCGTGGATCAATAGGGTGGTAGGTGGGTTTAGGCACATCTTAAAATTTCTATGTGCCAATGCCAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * * * *
15414846 TTTTATGTCTTGTAAATTCATATAGTGGTCCCTTAAGCCTTCACGCGAAGTTTCATGGGAAGACG
326 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
* * * **
15414911 ACTCGTTTTCTATTTTTCATGATTTTTGAAACCTTTTGCAGTTTAGGATTTTTTTAAAATTTTTT
391 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGA-TTTTTTAAAATTTTTT
* * * *
15414976 CGGAAGGAGTCTTGGCCCCCAACTTGGTAGATGTGATCCTTGTATTTTTGTTGGCATGCATAAAA
455 -GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA
* * *
15415041 AAATTCAGCTAAAAACTTGAAGTGTACAATATTTTGTGACCATTTGAAAAAAGTGTCCCCATTCC
519 AAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTC
* *
15415106 ATACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAGTGCTCTTTAAGGGGGTGTGAG
584 AGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAG
15415171 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
649 TTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACAT
*
15415236 CATGTGCGCACACCCCCTCGGCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCC
714 CATGTGCGCACACCCCC-CGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCT-C
** *
15415301 GACGATGCTGCGGTGATGGTGCCCCGGTGAAGAAAAATAC-GACACCAGCACATGCCCGAGCCCA
777 --C---G--GC---GATGGTGCCCCGACGAAGAAAAATGCAG-CACCAGCACATGCCCGAGCCCA
* * * * * *
15415365 GCATATGCTACCGCAACCCTTGATCCGGTTCGATCTTAGACTGAGAATGAACTCCGTATG
831 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15415425 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * *
15415490 CGGCCAGAGGGGCAGGATGTGCAAGCCGGGGATCAGTCGGGTCCCCCTCTACATGCTGCCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * ** * * * * *
15415555 TGCTGCCGTAACCTTCAATCCAGTCCGATCTTAGACTAGGAATGAACTCCATATGCCTCAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * *
15415620 CTGCCGAAACGAGCGGGCA-GGCGGACGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCA
196 CCGACGAAACGAGCGGG-AGGGCGGACGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * ** *
15415684 AGCTGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATCCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* *
15415749 ATTTTTATGGCTTGTAAATTCATACAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGCCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * * **
15415814 CGACTCATTTTCTATTTTTTGATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
389 CGACTCGTTTTCTA-TTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTT
* * * * *
15415879 TCGGAAGGAGTTTTGACCCCAACCTTGGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAA
453 TTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
15415944 AAAATTTAGCCAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* *
15416009 CAGACACTTTAATGGCTGCTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
*
15416074 GTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * *
15416139 TCATGTGCGCACACCCCCCGACCCCCCCGATCGCCAAAACCCCAATGCCACCGATCAGGTTCTCT
713 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTC-
* * *
15416204 GACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATGCGGCACCAGCACATGTCCGAGCCCAG
777 --C---G----G-CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAG
* **
15416269 TATGTGCTATCGCAA-CC-C--T-C-G---G--C-----CT-GG--T---CT--G-AT-
832 CATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15416302 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGACCGTGCGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* ** *
15416367 CGGTCAGAGGGGCGGGATGCGCAAG-CTGAAGATCGAG-CGGATCCCCCTCTGCGTGCTGCCGAT
66 CGGCCAGAGGGGCGGGATGCGCAAGTC-GGGGATCG-GTCGGGTCCCCCTCTGCGTGCTGCCGAT
* * * ** * *
15416430 CTTGCTGCTGTAACCCTCCATCCAGTCTGATCTTAG-CTGGGAATGAACTCTGTATGCCTAAGCC
129 CCTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCC
* * * * * *
15416494 AGCCGACGAAATGAGCAGGCA-GGCAGACGGGCAGGCACTACGCCGACCAGAGAGACAGGATGCG
194 AACCGACGAAACGAGC-GGGAGGGCGGACGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCG
* * *
15416558 CAAGCCATGGATCGATAGGGTGGTAGGTGAGTTTAGACACATCTTCATATTTCTACGTGCCAATG
257 CAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATG
* *
15416623 CCATTTTTATGGCTTGTAAAATCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAA
322 CCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAA
* *
15416688 GACGACAT-GTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTTCAAATT
387 GACGAC-TCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTT-AAAAT
*
15416752 TTTTTGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
450 TTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCAC
*
15416817 AAAACAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
515 AAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCA
* ** *** * ** ** * * * *
15416882 --TC--TCA----AAT-GCT-CT-TTA--AAGGGTGTGAGTTCT-GGA-GGT-TTGATGAGGGAT
580 TTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAG-GGGGT
** * * * *
15416931 AG-G-GGGC-C-A---AT-AT-A---AT----GGCCAA-GT-A---CC-AGCACC--CATCGCA-
644 -GTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA-CCCAT
** * ** * * * * * * *
15416971 --CATCAT-GGGCGCATACCCCCCCCGACCCCCTCGATTGCCGTAACCCCAATACCATCCGGT--
707 CGCA-CATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCC-GCCGGTCA
* * * * ** * * *
15417031 GATACTCCGACGATGGTGCCCCGATGAAGAAAAATGTGGCACCACCACATGCCTGAGCCCAACAT
770 GGTTCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCAT
* * *
15417096 GTGCTACCGCAACCCT-GGCCCGGTCCGATCTTAGACTGGGAATGAACTCCATAT-
835 GTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *
15417150 CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGT
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * *
15417215 CGGCCAGAAGGGCGGGATGCGGAAGTCGGGGATCGGCCGGGT-CCCTTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* *** * * *
15417279 TGCTGCCGTAACCCTCGGTCTATTCTAATCTTAGACTGGGAATGAACTCCATACGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
** * * * * *
15417344 CCGACGAAACGAGCGGGCTGGCGG--GTG-GGCACTACGCCGGCCTGAAAGACGTGATGTGCAAG
196 CCGACGAAACGAGCGGGAGGGCGGACGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
* *
15417406 CCGTGGATCGATAGGG-GGTAGTTGGGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCAT
261 CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
* * *
15417470 TTTCATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGTGAAGTTTCATGGCAAGATG
326 TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
** * *
15417535 ACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTC
391 ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTG
** * * * * *
15417600 GAAAAATTTTTGGTCCCAAACTTGGTAAACGTGATCCTTTTATTTTGGTTGGCATGCACAAAAAA
456 GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
*
15417665 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAATTGT-CCCATTTCAG
521 ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
*
15417729 ACACTTTAATGTCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
586 ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
* *
15417794 CTTGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGTACCCATCGCACATCA
651 CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
* * * * * *
15417859 TTTGTGCACACCCTCTCGGCCCCCCTGATCGTCGAAACCCCAATGCCACCGGTCAGGTTCTCCGG
716 TGTGCGCACACCC-CCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGG
* ** * **
15417924 CGATGGTGCCCCTACGAAGAAAAATGCAGCACCAGCACATGCTTGAGCCTAGCATGTGCTGTAGC
780 CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGC
* * *
15417989 AATCCTTGGTCCGGTCCGATCTCAGACT-GGAATGAACTCCGTATG
845 AACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* ** * * *
15418034 CTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACATACGAAACGAACGTGTGGGTGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * *** * *
15418099 TGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCAACCAGGTCCCCCTCTGCGTGCTGTCGATCC
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
* * * ** **
15418164 AGCTGCCGCAACTCTCAGTTTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
131 TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
* * * * * * * *
15418229 CTGATGAAACGAGCAGGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGAGACGGGACGTGCAA
196 CCGACGAAACGAGCGGGAGGGCGGACGGG-CGGCACTACGCCGGCCAGAGAGACGGGATGCGCAA
*
15418294 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATATTTCTACGTGCCAATGCCA
260 GCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA
* * * *
15418359 TTTTTGTGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTGCTCGTGAAGTTTCATGGCAAGAC
325 TTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC
* * * ** *
15418424 GACTTGTTTTCTACTTTTCACGATTTTTGAAACTTTTTGTGGTTCAAGAATTTTTAAAATTTTTT
390 GACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTT
** * *
15418489 CGGATA-GAGTTTTGTTCCCAAACTTGGTAGACGTGATCCTTGCATTTTTTTTGGCATGCACAAA
455 -GGA-AGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
15418553 AAAATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTCAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * *
15418618 CAGACACTTTAATGGCTGCTGGCAGCAAACCTATAAAATCTCAAATGCTCTTTAAGAGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
15418683 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAGGTACAAGCCCCCATCGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * * * * *
15418748 TCATGTACGCACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCTGCTGTTCAAGTTCTCC
713 TCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGC--C-G--C-CG--GTCA
* * * *
15418812 GGTGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAATGCGGCACCAGCACATGCCGGAGCCCAA
770 GGT--T-CTCCGGCGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAG
* * *
15418877 CATGTGCTACCGTAACCCTCGAGTCCGATCCGATCTTAGACTGGGAATGAACTCCGTATG
832 CATGTGCTGCCGCAACCCTCG-GTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
* * *** * * *
15418937 CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCATCCTGTGAAACGAACGTGCCGTCGCTCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
* * * * * * * *
15419002 TGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCAGTTGGGTCCCCTTCTACGTGCTGCC-AACA
66 CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATC-
* * *
15419066 CTGCTGCCACAACCCTCTGTCCGGTCTGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
130 CTGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA
* * * * * * *
15419131 ACCGATGAAACGAGTGGGCGGGCGGACGAGCGGGCACTACGCCGGCTAGAGAGACAGGATGCGTA
195 ACCGACGAAACGAGCGGGAGGGCGGACGGGC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCA
* * * * *
15419196 ACCCGTGGATCGGTAGAGTGGTAGGTGGGTTTAGGCAAATCTTCATATTTTTACGTGCCAATGCC
259 AGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCC
* *
15419261 ATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGA
324 ATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGA
* * *
15419326 CGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGGTTCGAGATTTTTGAAAATTTTT
389 CGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTT
* ** * * * *
15419391 TCAGAATTATTTTTGGCCCCAAACTTGGTATACATGATCCTTGTATTTTTTTTGGCATGCACAAA
454 T-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAA
* *
15419456 AAAATTCAGCGAAAAACTCGAAGTATACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
518 AAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTT
* * * * *
15419521 CAAACACCTTAATCGCTACTGGCAACAAACCTTTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
583 CAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* *
15419586 GTTCTCGTGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATTGCACA
648 GTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACA
* * *
15419651 TCATGTGCGCACACCCCCCCGGCACCCCCGATCACCG---CCCCAATGCCGCCGGTCAAGTTCTC
713 TCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCT-
* * * *
15419713 CGACGATGCTCCGACGATGGTGCCCCGACGAACAAGAATGCGGCACCAGCACATGCCCAAGCCCA
776 C--C---G----G-CGATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCA
* * * * * * *
15419778 GCAAGTGCTGCCGCAACCTTTGGTTCAGTTCGATCTTAAACTGGGAATGAACTCCGTATG
831 GCATGTGCTGCCGCAACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
15419838 C
1 C
15419839 CTAAGCCAAC
Statistics
Matches: 8467, Mismatches: 1073, Indels: 434
0.85 0.11 0.04
Matches are distributed among these distances:
824 58 0.01
825 2 0.00
828 1 0.00
829 2 0.00
832 2 0.00
834 1 0.00
835 5 0.00
836 38 0.00
837 7 0.00
838 2 0.00
839 5 0.00
840 7 0.00
841 6 0.00
842 122 0.01
843 156 0.02
844 45 0.01
845 5 0.00
846 8 0.00
847 50 0.01
848 136 0.02
849 4 0.00
850 4 0.00
851 2 0.00
852 1 0.00
853 1 0.00
854 11 0.00
855 3 0.00
856 7 0.00
857 6 0.00
858 1 0.00
859 2 0.00
860 6 0.00
861 7 0.00
862 3 0.00
863 11 0.00
864 1 0.00
865 1 0.00
866 5 0.00
867 95 0.01
868 162 0.02
869 160 0.02
870 186 0.02
871 24 0.00
872 12 0.00
873 4 0.00
874 2 0.00
875 129 0.02
876 354 0.04
877 181 0.02
878 6 0.00
879 34 0.00
880 24 0.00
881 101 0.01
882 25 0.00
883 83 0.01
884 123 0.01
885 99 0.01
886 112 0.01
887 184 0.02
888 272 0.03
889 133 0.02
890 714 0.08
891 364 0.04
892 834 0.10
893 89 0.01
894 8 0.00
895 1 0.00
896 4 0.00
897 30 0.00
898 144 0.02
899 325 0.04
900 5 0.00
901 560 0.07
902 105 0.01
903 856 0.10
904 874 0.10
905 285 0.03
906 30 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (890 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC
CGGCCAGAGGGGCGGGATGCGCAAGTCGGGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCC
TGCTGCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAA
CCGACGAAACGAGCGGGAGGGCGGACGGGCGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAG
CCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCAT
TTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACG
ACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTG
GAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA
ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAG
ACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTT
CTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA
TGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGC
GATGGTGCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATG
Found at i:15414534 original size:26 final size:26
Alignment explanation
Indices: 15414498--15414550 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15414488 CCAGTTTGAT
*
15414498 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15414524 CTTAGGCTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15414550 C
1 C
15414551 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15415428 original size:26 final size:26
Alignment explanation
Indices: 15415399--15415451 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15415389 CCGGTTCGAT
15415399 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
*
15415425 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15415451 C
1 C
15415452 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15418040 original size:25 final size:26
Alignment explanation
Indices: 15418012--15418060 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15418002 GTCCGATCTC
15418012 AGACT-GGAATGAACTCCGTATGCTT
1 AGACTGGGAATGAACTCCGTATGCTT
*
15418037 AGACTGGGAATGAACTCTGTATGC
1 AGACTGGGAATGAACTCCGTATGC
15418061 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
25 5 0.23
26 17 0.77
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.27
Consensus pattern (26 bp):
AGACTGGGAATGAACTCCGTATGCTT
Found at i:15418940 original size:26 final size:26
Alignment explanation
Indices: 15418911--15418963 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15418901 CCGATCCGAT
15418911 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15418937 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15418963 C
1 C
15418964 CTAAGTCATC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15419030 original size:903 final size:893
Alignment explanation
Indices: 15416881--15419838 Score: 3861
Period size: 903 Copynumber: 3.3 Consensus size: 893
15416871 AAGTGTCCCC
*
15416881 ATCTCAAATGCTCTTTAA-AGGGTGTGAGTTCTGGAGGTTTGATGAGGGATAGGGGGCCAATATA
1 ATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * * * *
15416945 ATGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCATACCCCCCCCGACCCCCTCGATTGCC
66 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACACCCCCCGGCCCCC-CGATCGTC
* * * * *
15417010 GTAACCCCAA---TAC-CA--TCCGGTGATACTCCGACGATGGTGCCCCGATGAAGAAAAATGTG
128 GGAACCCCAATGCTGCTCAGCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCG
* * *
15417069 GCACCACCACATGCCTGAGCCCAACATGTGCTACCGCAACCC-TGGCCCGGTCCGATCTTAGACT
193 GCACCAGCACATGCCTGAGCCCAACATGTGCTACCGCAACCCTTGGTCCGATCCGATCTTAGACT
* * *
15417133 GGGAATGAACTCCATAT-CTTAGACTAGGAATGAACTTCGTATGCCTAAGTCAACCCACGAAACG
258 GGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACGAAACG
* * * * * *
15417197 AGCGTGCGGGCGCTCAG-TCGGCCAGAAGGGCGGGATGCGGAAGTCGGGGATCGGCCGGGT-CCC
323 AACGTGCGGTCGCTCAGCT-GGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCC
* * **
15417260 TTCTGCGTGCTGTCGATCCTGCTGCCGTAACCCTCGGTCTATTCTAATCTTAGACTGGGAATGAA
387 TTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAA
* * * * * *
15417325 CTCCATACGCCTAAGCCAACCGACGAAAC--GA-GCGGGCTGGCGGGTGGGCACTACGCCGGCCT
452 CTCCGTATGCCTAAGCCAACCGATGAAACGAGAGGCGGGCGGGCGGGAGGGCACTACGCCGGCCA
* * *
15417387 GAAAGACGTGATGTGCAAGCCGTGGATCGATAGGG-GGTAGTTGGGTTTAGGCACATCTTCATAT
517 GAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATAT
* * *
15417451 TTCTATGTGCCAATGCCATTTTCATGGCTTGTAAATTCATACAATGGTCCCTTCAGCCTTCACGT
582 TTCTACGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGT
* **
15417516 GAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTCGA
647 GAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGA
* *
15417581 GATTTTTTAAAATTTTTTCGAAAAATTTTTGGTCCCAAACTTGGTAAACGTGATCCTTTTATTTT
712 GAATTTTTAAAATTTTTTCG-AAAATTTTTGGTCCCAAACTTGGTAAACGTGATCCTTGTATTTT
**
15417646 GGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
776 TTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAA
* * *
15417711 AAAATTGT-CCCATTTCAGACACTTTAATGTCTACTGGCAGCAAACCTGTAAA
841 AAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
* *
15417763 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGCCAATATA
1 ATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
15417828 AGGGCCAAGTACCAGTACCCATCGCACATCATTTGTGCACACCCTCTCGGCCCCCCTGATCGTCG
66 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCGGCCCCCC-GATCGTCG
* * * * * * * *
15417893 AAACCCCAATGC--CACCGGTCAGGT--T-CTCCGGCGATGGTGCCCCTACGAAGAAAAATGCAG
129 GAACCCCAATGCTGCTCAGCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGG
* * * *** * * *
15417953 CACCAGCACATGCTTGAGCCTAGCATGTGCTGTAGCAATCCTTGGTCCGGTCCGATCTCAGACT-
194 CACCAGCACATGCCTGAGCCCAACATGTGCTACCGCAACCCTTGGTCCGATCCGATCTTAGACTG
*
15418017 GGAATGAACTCCGTATGCTTAGACTGGGAATGAAC-TCTGTATGCCTAAGTCAACATACGAAACG
259 GGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTC-GTATGCCTAAGTCAACCTACGAAACG
* * * *
15418081 AACGTGTGGGT-GCTCAGCTGGCCAGAGGGGCGGGATGCGTAAGCCGGGGATCAACCAGGTCCCC
323 AACGTG-CGGTCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCC
* * * * *
15418145 CTCTGCGTGCTGTCGATCCAGCTGCCGCAACTCTCAGTTTGGTCCAATCTTAGACTGGGAATGAA
387 TTCTGCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAA
*
15418210 CTCCGTATGCCTAAGCCAACTGATGAAACGAGCAGGCGGGCGGGCGGGAGGGCACTACGCCGGCC
452 CTCCGTATGCCTAAGCCAACCGATGAAACGAG-AGGCGGGCGGGCGGGAGGGCACTACGCCGGCC
* *
15418275 AGAGAGACGGGACGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCCTCATA
516 AGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
** * * *
15418340 TTTCTACGTGCCAATGCCATTTTTGTGGCTTCTAAATTCATACAATGGTCCCTTAAGCCTGCTCG
581 TTTCTACGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACG
* * * *
15418405 TGAAGTTTCATGGCAAGACGACTTGTTTTCTACTTTTCACGATTTTTGAAACTTTTTGTGGTTCA
646 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCG
* * * * *
15418470 AGAATTTTTAAAATTTTTTCGGATAGAGTTTTGTTCCCAAACTTGGTAGACGTGATCCTTGCATT
711 AGAATTTTTAAAATTTTTTC-GA-AAATTTTTGGTCCCAAACTTGGTAAACGTGATCCTTGTATT
* *
15418535 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGCACAAGATTTTGTGACCATTTC
774 TTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTG
*
15418600 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAAACCTATAAA
839 AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
15418655 ATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
1 ATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * * *
15418720 AGGGCCAGGTACAAGCCCCCATCGCACATCATGTACGCACACCCCCCGGCCCCCCGATCGTCGGA
66 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGA
* *
15418785 ACCCCAATGCTGCTGTTCAAGTTCTCCGGTGATGCTCCGGCGATGGTGCCCCAACGAAGAAAAAT
131 ACCCCAATGCTGC---TC-AG--CTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAAT
* * *
15418850 GCGGCACCAGCACATGCCGGAGCCCAACATGTGCTACCGTAACCCTCGAGTCCGATCCGATCTTA
190 GCGGCACCAGCACATGCCTGAGCCCAACATGTGCTACCGCAACCCTTG-GTCCGATCCGATCTTA
* **
15418915 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCATCCTGTGA
254 GACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACGA
* * **
15418980 AACGAACGTGCCGTCGCTCAGCTGGCCAGAGGGGCGGGATGAGCAAGCCGGGGATCAGTTGGGTC
319 AACGAACGTGCGGTCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTC
* * * * * * * *
15419045 CCCTTCTACGTGCTG-CCAACACTGCTGCCACAACCCTCTGTCCGGTCTGATATTAGACTGGGAA
384 CCCTTCTGCGTGCTGTCGATC-CTGCTGCCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAA
* * * *
15419109 TGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGACGAGCGGGCACTACGCC
448 TGAACTCCGTATGCCTAAGCCAACCGATGAAACGAG-AGGCGGGCGGGCGGGAGGGCACTACGCC
* * * * * * * *
15419174 GGCTAGAGAGACAGGATGCGTAACCCGTGGATCGGTAGAGTGGTAGGTGGGTTTAGGCAAATCTT
512 GGCCAGAGAGACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
*
15419239 CATATTTTTACGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
577 CATATTTCTACGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* *
15419304 CACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTGCGG
642 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGG
* * * *
15419369 TTCGAG-ATTTTTGAAAATTTTTTCAGAATTATTTTTGGCCCCAAACTTGGTATACATGATCCTT
707 TTCGAGAATTTTT-AAAATTTTTTC-GAA-AATTTTTGGTCCCAAACTTGGTAAACGTGATCCTT
* *
15419433 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTATACAAGATTTTGTGACC
769 GTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
* * * * *
15419498 ATTTGAAAAAAGTGTCCCCATTTCAAACACCTTAATCGCTACTGGCAACAAACCTTTAAA
834 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
* *
15419558 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGTGGTTTGATGAGGGATAGGGGGCCAATATA
1 ATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* * *
15419623 AGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCACCCCCGATC-ACC
66 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC-CCCCCGATCGTCG
* ** * *
15419687 G--CCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAACAAGA
129 GAACCCCAATGCTG-C--TC-AG--CTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAA
** * * * * * *
15419750 ATGCGGCACCAGCACATGCCCAAGCCCAGCAAGTGCTGCCGCAACCTTTGGTTC-AGTTCGATCT
188 ATGCGGCACCAGCACATGCCTGAGCCCAACATGTGCTACCGCAACCCTTGGTCCGA-TCCGATCT
*
15419814 TAAACTGGGAATGAACTCCGTATGC
252 TAGACTGGGAATGAACTCCGTATGC
15419839 CTAAGCCAAC
Statistics
Matches: 1810, Mismatches: 221, Indels: 71
0.86 0.11 0.03
Matches are distributed among these distances:
881 6 0.00
882 40 0.02
883 158 0.09
884 109 0.06
885 87 0.05
886 5 0.00
887 1 0.00
888 1 0.00
889 60 0.03
890 181 0.10
891 116 0.06
892 142 0.08
895 1 0.00
896 1 0.00
898 5 0.00
900 2 0.00
901 101 0.06
902 124 0.07
903 648 0.36
904 13 0.01
905 9 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (893 bp):
ATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGGA
ACCCCAATGCTGCTCAGCTCCGGTGATGCTCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCA
CCAGCACATGCCTGAGCCCAACATGTGCTACCGCAACCCTTGGTCCGATCCGATCTTAGACTGGG
AATGAACTCCGTATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAACCTACGAAACGAAC
GTGCGGTCGCTCAGCTGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCAGCCGGGTCCCCTTCT
GCGTGCTGTCGATCCTGCTGCCGCAACCCTCAGTCTGGTCTAATCTTAGACTGGGAATGAACTCC
GTATGCCTAAGCCAACCGATGAAACGAGAGGCGGGCGGGCGGGAGGGCACTACGCCGGCCAGAGA
GACGGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCT
ACGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAG
TTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTGCGGTTCGAGAAT
TTTTAAAATTTTTTCGAAAATTTTTGGTCCCAAACTTGGTAAACGTGATCCTTGTATTTTTTTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAA
Found at i:15420449 original size:715 final size:716
Alignment explanation
Indices: 15419101--15420546 Score: 2160
Period size: 715 Copynumber: 2.0 Consensus size: 716
15419091 CTGATATTAG
** *
15419101 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGATGAAACGAGTGGGCGGGCGGACGAGCGGGC
1 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACCAAACGAGCGGGCGGGCGGACGAGCGGGC
* * *
15419166 ACTACGCCGGCTAGAGAGACAGGATGCGTAACCCGTGGATCGGTAGAGTGGTAGGTGGGTTTAGG
66 ACTACGCCGGCCAGAGAGACAGGATGCGCAACCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGG
*
15419231 CAAATCTTCATATTTTTACGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCT
131 CAAATCTTCATATTTCTACGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCT
* *
15419296 TAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACT
196 TAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
* * ** * *
15419361 TTTTGCGGTTCGAGATTTTTGAAAATTTTTTCAGAATTATTTTTGGCCCCAAACTTGGTATACAT
261 TTGTACGGTTCGAGATTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
*
15419426 GATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTATACAAGATTT
326 GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTATACAAGATTT
*
15419491 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACCTTAATCGCTACTGGCAACAAACCTTTA
391 TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACCTTAATCGCTACTGGCAACAAACCTGTA
** *
15419556 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGTGGTTTGATGAGGGATAGGGGGCCAATA
456 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTTTGATGAAGGATAGGGGGCCAATA
*
15419621 TAAGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCCCGGCACCCCCGATCAC
521 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCACCCCCGATCAC
* *
15419686 CGCCCCAATGCCGCCGGTCAAGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAACAAGAA
586 CGCCCCAATGCCGCCAGTCAAGTTCTCCGACGATGATCCGACGATGGTGCCCCGACGAACAAGAA
* * * * *
15419751 TGCGGCACCAGCACATGCCCAAGCCCAGCAAGTGCTGCCGCAACCTTTGGTTC-AGTTCGATCTT
651 TGCAGCACCAGCACATGCCCAAGCCCAGCAAGTGCTGCCGCAACCCTCGGTTCGA-TCCAATCTT
15419815 AA
715 AA
* * * *
15419817 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACCATACGAGCGGGCGTGCAGG-CGGGTGGG
1 ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACCAAACGAGCGGGCGGGC-GGACGAGCGGG
* * * *
15419881 CACTATGCCGGCCAGAGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
65 CACTACGCCGGCCAGAGAGACAGGATGCGCAACCCGTGGATCGATAGAGTGGTAGGTGGGTTTAG
*
15419946 GCACATCTTCATATTTCTACGTGCCAATGCCATTTTAGA-GGCTTGTAAATTCATGTAC-AT-GT
130 GCAAATCTTCATATTTCTACGTGCCAATGCCATTTTA-ATGGCTTGTAAATTCA--TACAATGGT
* *
15420008 -CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCACGATTTTTAA
192 CCCTTAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAA
*
15420072 AACTTTGTACGGTTCGAGAGTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
257 AACTTTGTACGGTTCGAGA-TTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
15420136 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACCA
321 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTATA-CA
* * * *
15420201 AGA-TTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAAACACTTTAATGGCTATTGGCAGCAAA
385 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACCTTAATCGCTACTGGCAACAAA
15420264 CCTGTAAAATCTCAAATGCTC-TTAA-GGGGTGTGAGTTCTCGACGTTTGATGAAGGATAGGGGG
450 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTTTGATGAAGGATAGGGGG
* * *
15420327 CCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCCCGGGCGCCCCC
515 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCACCCCC
* * * *
15420392 GATCTCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGAGGATGATCC-AGTGATGGTGCCCCGA
580 GATCACC-G--CCCCAATGCCGCCAGTCAAGTTCTCCGACGATGATCCGA-CGATGGTGCCCCGA
* * * * * *
15420456 CGAAGAATAATGCAGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTTCGA
641 CGAACAAGAATGCAGCACCAGCACATGCCCAAGCCCAGCAAGTGCTGCCGCAACCCTCGGTTCGA
*
15420521 TCCAATCTTAG
706 TCCAATCTTAA
15420532 ACTGGGAATGAACTC
1 ACTGGGAATGAACTC
15420547 TGTAAGCTTA
Statistics
Matches: 658, Mismatches: 61, Indels: 23
0.89 0.08 0.03
Matches are distributed among these distances:
712 102 0.16
713 5 0.01
714 53 0.08
715 316 0.48
716 174 0.26
717 5 0.01
718 3 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (716 bp):
ACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACCAAACGAGCGGGCGGGCGGACGAGCGGGC
ACTACGCCGGCCAGAGAGACAGGATGCGCAACCCGTGGATCGATAGAGTGGTAGGTGGGTTTAGG
CAAATCTTCATATTTCTACGTGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGGTCCCT
TAAGCCTTCACGTAAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTAAAACT
TTGTACGGTTCGAGATTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTAGACAT
GATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCGAAAAACTCGAAGTATACAAGATTT
TGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACCTTAATCGCTACTGGCAACAAACCTGTA
AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGACGTTTGATGAAGGATAGGGGGCCAATA
TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCACCCCCGATCAC
CGCCCCAATGCCGCCAGTCAAGTTCTCCGACGATGATCCGACGATGGTGCCCCGACGAACAAGAA
TGCAGCACCAGCACATGCCCAAGCCCAGCAAGTGCTGCCGCAACCCTCGGTTCGATCCAATCTTA
A
Found at i:15421457 original size:26 final size:26
Alignment explanation
Indices: 15421421--15421473 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15421411 CCAGTCCGAT
15421421 CTTAGACTGGGAATGAACGCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
*
15421447 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACGCCGTATG
15421473 C
1 C
15421474 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACGCCGTATG
Found at i:15422362 original size:26 final size:26
Alignment explanation
Indices: 15422326--15422376 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15422316 AGTCTGATCT
*
15422326 TAGATTGGGAATGAACTCCGTATGCA
1 TAGACTGGGAATGAACTCCGTATGCA
*
15422352 TAGACTGGGAATGAACTTCGTATGC
1 TAGACTGGGAATGAACTCCGTATGC
15422377 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.16, G:0.27, T:0.27
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCA
Found at i:15425040 original size:26 final size:26
Alignment explanation
Indices: 15425011--15425089 Score: 131
Period size: 26 Copynumber: 3.0 Consensus size: 26
15425001 CTGGTCTGAT
* *
15425011 CTTAGACTGGGAAAGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15425037 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
15425063 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15425089 C
1 C
15425090 CTAAGTCAAC
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 49 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15425983 original size:25 final size:26
Alignment explanation
Indices: 15425940--15425991 Score: 97
Period size: 25 Copynumber: 2.0 Consensus size: 26
15425930 CTGGTTCAAT
15425940 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15425966 CTTAGACT-GGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15425991 C
1 C
15425992 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 18 0.69
26 8 0.31
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.27
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15426417 original size:903 final size:904
Alignment explanation
Indices: 15419809--15428717 Score: 11400
Period size: 903 Copynumber: 9.8 Consensus size: 904
15419799 GGTTCAGTTC
* * * * *
15419809 GATCTTAAACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACCATACGAGCGGGCGTGCAGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * * *
15419874 GGGTGGGCACTATGCCGGCCAGAGAGACAGGATGTGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
** *
15419939 GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCA-TTTTAGAGGCTTGTAAATTCATGTA
131 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTA-TGGCTTGTAAATTCA--TA
*
15420003 C-AT-GT-CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTGTATTTTTCACGA
193 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* * *
15420065 TTTTTAAAACTTTGTACGGTTCGAGAGTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
258 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
15420130 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
323 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* *
15420195 GTACCAAGA-TTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAAACACTTTAATGGCTATTGGC
388 GTA-CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* *
15420258 AGCAAACCTGTAAAATCTCAAATGCTC-TTAA-GGGGTGTGAGTTCTCGACGTTTGATGAAGGAT
452 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
*
15420321 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGTACATCATGTGCGCACACCCCC-CGGG
517 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTC-GG
* * * * *
15420385 CGCCCCCGATC-TCCGGAACCCCAATGCCGCCAGTCAGGTTCTCCGAGGATGATCCAGTGATGGT
581 CCCCCCCGATCGT-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGT
* * * *
15420449 GCCCCGACGAAGAATAATGCAGCACTAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTC
645 GCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
* * * * * *
15420514 GGTTCGATCCAATCTTAGACTGGGAATGAACTCTGTAAGCTTAGATTGGGAATGAACTCCGTATG
710 GGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
** * * * * * *
15420579 CCTAAGTCAACCCAAAAAACGAGTGTGCGAGCGCTCAACCGACCAGAGGGGCGAGATACGCAAGC
775 CCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * * *
15420644 C-AGGGATCGA-CTGGGTCCCCCTCTACGTGCTGCTGATCCTGCTACCGCAACCCTCAGTTTGGT
840 CGA-GGATCGATC-GGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGT
15420707 CT
903 CT
* * **
15420709 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGATGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * * *
15420774 AGGCGGGCACTACG-TCGGCTAGAGAGACGGGATGCGCAAGCCTTGGATCGTTAGGGTGGCAGGT
66 GGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
15420838 GGGTTTAGGTACATCTTCATATTTCT-TCATGCCAATGCCATTTTTATGGCTTGTAAATTGATAC
130 GGGTTTAGGCACATCTTCATATTTCTGT-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* *
15420902 AATGGTCCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCACGAT
194 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGAT
** * * * *
15420967 TTTCAAAACTTTTTGCGGTTCTG-GATTTCTTAAAATTTTTTCAGAAGGAGTTCTGGCCCCAAAC
259 TTTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* *
15421031 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAATAATTAAGCTAAAAACTCGAAGT
323 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
*
15421096 GTACAAGATTTTGTGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATTGCTACTGGCA
388 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
**
15421160 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAATGATA
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * ** * *
15421225 GGGGGACAATATACGGGCCAAGTACTGGCACCCATCGCACATCATCTGCGTACACCCCC-CGG-C
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCC
* * *
15421288 CCCCCGATTGTCGGAACCCCAATGCCACCGGTCAGGTTTTCCGACGATGCTCCGGTGATGGTGCC
583 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCC
* * * * * * *
15421353 CCGGCAAAGAAAAATGAGGCACCAGCAC-T-----TGCCCAGCATGTGCTGCCACAA-CCTCAGC
648 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
15421411 CCAGTCCGATCTTAGACTGGGAATGAACGCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
713 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * * * * * * *
15421476 AAGTCAACTCATGAAACGAGCGTACAGGCGCTCAGCCTGACAGAGGGGCGGGATGCACAAGCCGG
778 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA
* * * * * *
15421541 GGATCGGTCGGGTCCCCCTTTACGTGCTACCGATCCTGCTGCCGCAACCCTCAGTCCGGTCT
843 GGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGTCT
* * *
15421603 GATCTTAGATTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCCGACGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
15421668 GGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* * * * *
15421733 GGTTTAGGTACATCTTCATATTTCAGCGTGCCAATGCAATTTTTGTGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * *
15421798 TGGTCCCTTCAG-CTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTTTATTTTTCACGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * * * * * *
15421862 TCAAAACTTTTTGCGGTTTGGGATGTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAAATTA
261 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
15421927 GTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTAAGCTAAAAACTCGAAGTGTA
326 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
15421992 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCCGCA
391 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* * * *
15422057 AACCGGTAAAATATCAAATGCTCTTTAAGAGGGTCTGAGTTCT-GAAGGTTTGATGAGGGATA-G
456 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCG-AGGTTTGATGAGGGATAGG
* * *
15422120 GGGCCAATATAACGGCCAGGTACCAGCACCCATCGCACATCACGTGCGCACAACCCCCTCGGCCC
520 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCTCGGCCC
* * * * * * *
15422185 CCCCGATTGCCGGAACGCCAATGCCGTCGGTTAGGTTCTCCGACGATGCTCCGATGATGGTGCCT
584 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCC
** * * * * *
15422250 CGGTGAAGAAAAATACGGCACCAGCACATGCCCAACCCCGGCATGTCCTGCCGCAACCCTCGGTC
649 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * * * *
15422315 CAGTCTGATCTTAGATTGGGAATGAACTCCGTATGCATAGACTGGGAATGAACTTCGTATGCCTA
714 CGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA
* ** * *** *
15422380 AGTCAACCCACGAAATGAGCGTGCGGATGCTCAACCGGCCAGAGGGTTAGGATGAGCAAGCCGAG
779 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAG
* * * *** * *
15422445 GATCGGTAGGGTCCCCCTCTGCGTACTACCGATCCTACTATTGTAACCCTCGGTCCGGTCT
844 GATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGTCT
*
15422506 GATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGA------------GC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
*
15422559 GGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*** * * *
15422624 GGTTTAGGCACATCTTCATATTTCTACATTCCAATGCTATTTTTATGGCTTGTAAATTAATACAA
131 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
15422689 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTACTATTTTTCACGA-TT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * * * * *
15422753 TTCAAAATCTTTTATGGTAT-GGGATTTTTTAAAAAATTTTTCGAAAGGATTTTTGGCCCCAAAC
261 TTGAAACT-TTTTACGGT-TCGAGATTTTTT-AAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* *
15422817 TTGGTAGACGTGATCCATGTATTTTTGTTGGGATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
323 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* * * *
15422882 GTACAAGATTTTCTGACCATTTGAAAAAAGTGTCCCCATTTCATACACTTTAATAGCTATTGGCA
388 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* * * * * * **
15422947 GGAAACCTGTAAAATCTCAAATTCTCTTTAAGTGGGTGTGAGTTCTGGAGGATTCATGACAGATA
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * * * * * *
15423012 GAGGGCCAACATAAGAGCCAAGTACCAGCACCCATCACACATCACGTGTGCACACCCCCCCGGCC
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCC
* * *** ** * **
15423077 CCCCCAATCGCCGGAACCCCAACATCGCCGGTCAGGTTCTCCGGTGATGCTTCGACGATGGTGCC
583 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCC
*
15423142 CCAACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
648 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * *
15423207 CCGATCCGATCTTAGATTGGGAATGAACTCCGTATCCTTAGACTGGGAATGAACTTCGAATGCCT
713 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCT
* * ** *
15423272 AAGTCAA-CCACGAAACGAGCGTGTGGACGCTCAGTTGGCCAGAGGGGCGAGATGCGCAAGCC-A
778 AAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGA
** * * ** * *
15423335 GGGATC-AGTCGGGTCCCCCTCTGCGTGCTGTCGATCCTGCTACCATAACCCTCGATTTGGT-T
843 -GGATCGA-TCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGTCT
* * *
15423397 CGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAATGAGCGAGCGGGCGGG
1 -GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG
** * *
15423462 CGGATGGGCACTACG-TCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTTGG
65 CGGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* *
15423526 TGGGTATAGGCACATCTTCATATTTCT-TCATG-CAATGCCATTTTTATGGCTTGTAAATTCATA
129 TGGGTTTAGGCACATCTTCATATTTCTGT-GTGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
15423589 CAATGGTCCTTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGA
193 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* ** * * *
15423654 TTTCTGAAACTTTTTGTGGTTTGGGATTTTTTAAAATTCTTTCGGAAGGAGTTTTGGCCCCAAAC
258 TTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC
* * *
15423719 TTGGTAGACGTGATTCTTGTATTTCTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGT
323 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
15423784 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
388 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
15423849 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
453 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* * *
15423914 GGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCAAGTGCGCACACCCCC-C-GAC
518 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCC
* * * * * * * *
15423977 CCCCCGATCGTCGGAACCCCAATGCTGTCGGTCATGTTCTTCGATGATGCTCCGATAACGGTGCC
583 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCC
* * * * * * *
15424042 CCGACAAAGAAAAATGTGGCACCAGCAGATGACCAAGCCCAGCATGTGCTACCACAACCCTCGGT
648 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
**
15424107 CCGATCTGATCCGATCTTAGACTGGGAATGAACTCCACATGCTTAGACTGGGAATGAACTCCGTA
713 CCG----G-TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* *
15424172 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGTAA
773 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * ** * *
15424237 GCTGAGGATCGGTCGGGTCCCCTTCTGTGTGCTGTCAATCCTACTGCCGCAACCCTTGGTCTGGT
838 GCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGT
*
15424302 CC
903 CT
* * * * * * *
15424304 AATCTTAAATTGGGAATGAACTCCGTATGCCTAAGCCAATCGAAGAAACGAGCAGGCGGACGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * * *
15424369 GGACGGGCACTACG-TCGACCAGAGAGATGGGATACGTAAGCCGTGGATCGATAGGGTGGTAGGT
66 GGGCGGGCACTACGCT-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
15424433 GGGTTTAGGCACATCTTCATATTTCTGTCTGCCAATGCCATTTTTATGGCTTGTGAATTCATACA
130 GGGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * * * *
15424498 ATGGTCCCTTAAGCCTTCACATGAAGTTTCGTGGCGAGACGACTCGTTTTCTATTTTGCACAATT
195 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* *
15424563 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGAAAGGTGTTTTGGCCCCAAACTT
260 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
15424628 GGTAGATGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGC
325 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* ** *
15424693 ACAAGATTTTGTGAACATTTGAAAAAAGTGTCCCCATTTGGGACACTTTAATTGCTACTGGCAGC
390 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
15424758 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGATTTCTCGAGGTTTGATGATGGATAGG
455 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
15424823 GGGCCAATATAAGGGCCAAGT---AG----CAT-G----T-A----CGCACACCCCCAGCCGGCC
520 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC--TCGGCC
* ** * * ** *
15424871 CCCCCGATCGTCGGAACCCCAGTGCTTCCGATCAGGTTCTTCGGTGATGCTTCGGTGATGGTGCC
583 CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCC
** * * * *
15424936 CCGGTGAAGAAAAATGTGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGTCGTAACCCTCGGT
648 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
*
15425001 CTGGTCTGATCTTAGACTGGGAAAGAACTCTGTATGCTTAGACTGGGAATGAACTCCATATGCTT
713 C----C-G------G--T---------C-C-G-AT-CTTAGACTGGGAATGAACTCCGTATGCTT
* * * *
15425066 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGAGCACTCAGCTGT
752 AGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGG
* * * * ** *
15425131 TCAGAGGGGCGGGATGCGCAACCCAAGGATCGATCGGGACCTGCTCTGCATGCTACCGATCCTAC
817 CCAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTAC
* * * *
15425196 TACCGTAACCCTCGATCCGGTCT
882 TGCCGCAACCCTCGGTCTGGTCT
* * * ** * *
15425219 GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAA-CGACAAAACAAGCGGGCGAACAGGT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * *
15425283 GGGCAGGCACTACGCCGACTAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
*
15425348 GGTTCAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
15425413 TGGTCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
** * * * * *
15425478 TCAAAACTTTTTACAGTTCTAGATTTTTTAAAATTTTTTTGGAAGGTGCTTTGGCCCCAAACTTG
261 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* ** * * *
15425543 GTAGACGTGATCCTTGTATTTTTATTCACTTGCACAAAAAAATTCAGCTAAAAACTTGAAGTTTA
326 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
15425608 CAAGATTTTGTTACCAATTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCA
391 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
15425673 AACCTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGG
456 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
15425738 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCC
521 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCC
* * *
15425803 CCGATCGTCGGAACCCCAGTGCCGTCGGTCAGGTTCTCCGACGATGCTTCGGTGATGGTGCCCCG
586 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCG
** * ** * * *
15425868 GTGAAGAAAAATGCTGCACCAGCACATGCCCGAGCCCAGCATGTGCTATCGTAACCTTCGGTCTG
651 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* *
15425933 GTTCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACT-GGAATGAACTCCGTATGCCTAAG
716 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
* *
15425997 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGACGGGATGCGCAAGCCAAGGA
781 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGA
** * * * * * *
15426062 TCGATTAGGTCCCCCTCTGTGGGCTGCCGATCTTACTGCCGCAACCCTCGGTCTAGTTT
846 TCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGTCT
* * *
15426121 GATCTTAGATTGGCAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGGCGGGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * * * * *
15426186 AGACGGGCACTATGCTGACCAGAGAGATGGGATGCGTAAGCCGTGGAACGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
15426251 GGTTTAGGCACATCTTCATATATCTGTGTGCCAATACCATTTTTATGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * * *
15426316 CGATCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGAGTCGTTTTCTATTTTTCACAATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * *
15426381 TTGAAACTTTTTACGGTTCGGGATTTTTTCAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACTTG
261 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * *
15426446 GTAGACATGATCTTTGTATTTTTTTTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
326 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* *
15426511 CAAGATTTTGTTACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAGCA
391 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
15426576 AACCTGTAAAATCTCAAATGCTCTTTAAGGCGGTGTGAATTCTCGAGGTTTGATGAGGGATAGGG
456 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
15426641 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCAGATCATGTGCGCACACCCCCCGCCGGCCC
521 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCC-TCGGCCC
* * * ** ** *
15426706 CCCCGATCGCCGTAACCCCAATGCCGCCGATCAGGTTCTCCGGTGATGCTTTGGCGATGGTGCCC
584 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCC
* * * *
15426771 CGATGAAGAAAAATGTGGCACCAACATATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
649 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C--TC
*
15426836 TGGTCCGATCTTAGACTGGGAATGAACTTCGTATGCTTAGACTGGGAATGAACTCTGTATGCTTA
710 --G---G-TC-----C--GG--T---C--CG-AT-CTTAGACTGGGAATGAACTCCGTATGCTTA
* **
15426901 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCCGTT
753 GACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGC
* * * * *** *
15426966 CAGAGGGGTGGGATGTGTAAGCCGAGGATCGACCGGGTCTTGCTCTGGGTGCTACCGATCCTACT
818 CAGAGGGGCGGGATGCGCAAGCCGAGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACT
*
15427031 GCC-CTAACCCTCGGTCCGGTCT
883 GCCGC-AACCCTCGGTCTGGTCT
* * * * * *
15427053 GATCTTAGACTAGGAATGAACTTCGTATGCCTAAGCCAA-TGACGAAACGAGTGGGCGGACGAGC
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
* * * * * *
15427117 GGGCGGGCACTGCACCGGCAAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGAGTGGTAGGTG
66 GGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
15427182 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
131 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
15427247 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * ** *
15427312 TTGAATCTTTTTATGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGGTCCAAACGTG
261 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
*
15427377 GTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAACAA-TCAGCTAAAAACTCGAAGTGT
326 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAA-AATTCAGCTAAAAACTCGAAGTGT
* * * *
15427441 ACAACATTTTGTGACCTTTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAATGGCTACTGGAAGC
390 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* *
15427506 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGA
455 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
* *
15427571 GGGCCAATATAATGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCCCTCGGC
520 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---CCCCCTCGGC
* * *
15427636 CCCCTCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGC
582 CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGC
* * ** *
15427701 CTCGGCGAAGAAAAATGCGGCACCAGCACATGCTTGAGCCCAGCATGTGCTGCCGCAACCCTCGA
647 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * *
15427766 TCCGGTCGGATCTTAGACTGGAAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCC
712 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCC
* * * *
15427831 TAAGTCAACCCACGAAACGAGCGTGTGGGCGC-CAGTCGACCAGAGGGGCTGGATGCGCAAGCCG
777 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* ** ** * * * *
15427895 GGGATCGGCCGGGTCCTTCTTTGCGTGCTACCGATCCTGCTGCCGCAACCCTTGGTCTGGTAT
842 AGGATCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGTCT
* * * *
15427958 GATCTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAGCGAGCGGGCGGGT
1 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
*
15428023 GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
66 GGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* ** * *
15428088 GGTTTAGGCACACCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTCATAAAA
131 GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
* * * * *
15428153 TGGTCCCTTAAGCCTTCACGTGAATTTTCATGGCAAGATGACTCATTTTTTATTTTTCATGATTT
196 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * ** *
15428218 TTGAAACTTTTAATGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGGTCCAAACATG
261 TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* *
15428283 GTAGACGTGATCCTTGTATTTTTCTTGGCATGCACAAAAAAAATCAGCTAAAAACTCGAAGTGTA
326 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
*
15428348 CAAGATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
391 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
* *
15428413 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTCAGTTCTCAAGGTTTGATGAGGGATAGGG
456 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* * * * * *
15428478 GACGAATATAGGGGCCAAGTACC-GACACCCATCGTACATCATGTGCGCACACTCCCTTGGCCCC
521 GGCCAATATAAGGGCCAAGTACCAG-CACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCC
**
15428542 CCCGATCACCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCAGTGATCCTCTGGC
585 CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCC-G-G------T---
* * *
15428607 GATGGTGCCTCGACGAAGAAAAATGCGGCACCAGCACATGGCTGAGCCCAGCATGTGCTGCCGCA
639 GATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCA
* * *
15428672 ACCCTCTGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATGC
704 ACCCTCGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
15428718 CTAAGCCAAC
Statistics
Matches: 7017, Mismatches: 836, Indels: 298
0.86 0.10 0.04
Matches are distributed among these distances:
890 11 0.00
891 143 0.02
892 204 0.03
893 631 0.09
894 604 0.09
895 25 0.00
896 82 0.01
897 1 0.00
898 4 0.00
899 4 0.00
900 284 0.04
901 340 0.05
902 446 0.06
903 980 0.14
904 103 0.01
905 288 0.04
906 804 0.11
907 355 0.05
908 1 0.00
909 2 0.00
910 1 0.00
911 2 0.00
912 1 0.00
913 2 0.00
914 556 0.08
915 194 0.03
916 1 0.00
917 3 0.00
918 1 0.00
921 3 0.00
922 5 0.00
924 2 0.00
926 2 0.00
927 1 0.00
928 2 0.00
929 125 0.02
930 3 0.00
931 522 0.07
932 273 0.04
933 6 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (904 bp):
GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGC
GGGCGGGCACTACGCTGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
GGTTTAGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
TTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCC
CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGTGATGGTGCCCCG
ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAG
TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGAGGA
TCGATCGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCGCAACCCTCGGTCTGGTCT
Found at i:15426881 original size:26 final size:26
Alignment explanation
Indices: 15426845--15426923 Score: 133
Period size: 26 Copynumber: 3.0 Consensus size: 26
15426835 CTGGTCCGAT
15426845 CTTAGACTGGGAATGAACTTCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15426871 CTTAGACTGGGAATGAAC-TCTGTATG
1 CTTAGACTGGGAATGAACTTC-GTATG
*
15426897 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTTCGTATG
15426923 C
1 C
15426924 CTAAGTCAAC
Statistics
Matches: 50, Mismatches: 1, Indels: 4
0.91 0.02 0.07
Matches are distributed among these distances:
25 2 0.04
26 47 0.94
27 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTTCGTATG
Found at i:15427817 original size:26 final size:26
Alignment explanation
Indices: 15427777--15427829 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15427767 CCGGTCGGAT
15427777 CTTAGACTGGAAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
15427803 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
15427829 C
1 C
15427830 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:15429438 original size:26 final size:26
Alignment explanation
Indices: 15429398--15429450 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15429388 CCGGTCCGAT
*
15429398 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGAAATGAACTCCATATG
* *
15429424 CTTAGATTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCATATG
15429450 C
1 C
15429451 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCATATG
Found at i:15430330 original size:26 final size:26
Alignment explanation
Indices: 15430301--15430353 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15430291 CCGATCTGAT
15430301 CTTAGACTAGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
*
15430327 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCGTATG
15430353 C
1 C
15430354 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCGTATG
Found at i:15433150 original size:26 final size:26
Alignment explanation
Indices: 15433121--15433173 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15433111 CTGGTCCGAT
*
15433121 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15433147 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15433173 C
1 C
15433174 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15435893 original size:26 final size:26
Alignment explanation
Indices: 15435837--15435932 Score: 167
Period size: 26 Copynumber: 3.7 Consensus size: 26
15435827 TCCGTCTTAA
15435837 TTAGACTGGGAATGAAC-CCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
* *
15435862 TTAGACTGGGAATGAACTTCATATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15435888 TTAGACTGGGAATGAACTCCGTATGC
1 TTAGACTGGGAATGAACTCCGTATGC
15435914 TTAGACTGGGAATGAACTC
1 TTAGACTGGGAATGAACTC
15435933 TGTCTGCCTA
Statistics
Matches: 66, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 17 0.26
26 49 0.74
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.27
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTCCGTATGC
Found at i:15438575 original size:26 final size:26
Alignment explanation
Indices: 15438546--15438643 Score: 178
Period size: 26 Copynumber: 3.8 Consensus size: 26
15438536 CCGGTCTGAT
15438546 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
* *
15438572 CTTAGACTGGGAATGAACTTCATATG
1 CTTAGACTGGGAATGAACTCCGTATG
15438598 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15438624 CTTAGACTGGGAATGAACTC
1 CTTAGACTGGGAATGAACTC
15438644 TGTCTGCCTA
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 68 1.00
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15440400 original size:26 final size:26
Alignment explanation
Indices: 15440360--15440412 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
15440350 CCGGTTTGAT
15440360 CTTAGACCAGAAATGAAC-TCAGTATG
1 CTTAGACCAGAAATGAACTTC-GTATG
* *
15440386 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACCAGAAATGAACTTCGTATG
15440412 C
1 C
15440413 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (26 bp):
CTTAGACCAGAAATGAACTTCGTATG
Found at i:15440686 original size:890 final size:888
Alignment explanation
Indices: 15435887--15442938 Score: 7730
Period size: 890 Copynumber: 7.9 Consensus size: 888
15435877 ACTTCATATG
* * *
15435887 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTCTGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * *
15435952 ACGAAACGAGCGTGCGGGTGCTCAGCTGTGCTCAGCTGGTAGAGGGGCGGGATGCGCAAGTCGAG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCG-G--C--C----AGAGGGGCGGGATGCGCAAGCCG-G
* ** * * * * *
15436017 GGATTGGCCGGGTCCCCCTCTACG-GCATACCGAT-CTGCT-ACGTAACCCTTGGTCCGGTTCGA
121 GGATCGATCGGGTCCCCCTCTACGTGC-TGCTGATCCTGCTGCCGTAACCCTCGGTCCGGTCCGA
* * * * *
15436079 TCTTAGA--GGGTATGAACTCCGTATGCCTAAGCCATACTGATTGAAATGAGCGGC-GGTGGGCA
185 TCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCA-ACCGA-CGAAACGAGCGGCGGGCGGGC-
* * *
15436141 GGCGGGCACTACGTTGGCCAGAGAGATC-AGATGCGCAAGCCGTAGATTGATA-GG-GGTAGGTG
247 GGCGGGCACTACGTCGGCCAGAGAGA-CGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* **
15436203 GGTTTAGGCACATCTTC-TATTTCTGCGTGCCAATGAAATTTTCTATGGCTTGTAAATTCATACA
311 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTT-TATGGCTTGTAAATTCATACA
*
15436267 ATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
375 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * * **
15436332 TTCAAAAATTTTTAAGGTTCGGTATTTTTTAAAATTTTTTTGGAAAAAGTTTTGGCCCCAAACTT
440 TTCGAAACTTTTTAAGGTTCGGGATTTTTTAAAA-TTTTTTGGAAGGAGTTTTGGCCCCAAACTT
* *
15436397 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAATATTTAGCTAAAAACTCGAAGTGT
504 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
* * *
15436462 ACAAGATTTTGTGACCATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAAC
569 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * * *
15436527 AAACCTGTAAAATCTCAATTGCTCTTTAAGGGTGTGTAAGTTCTCGAGGATTGATGAGGGATAGG
634 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
15436592 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGGCCCC
699 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-GGCCCC
* * *
15436657 CCGATCGT-GAGAACCCCAATGTAGCCGGTCAGGTTCTCCGACGATGCTCCGACGCGATGGTG-C
763 CCGATCGTCGA-AACCCCAATGT---C-GTC--G--AT-C-AGGCTGCTCCG--GCGATGGTGCC
*
15436720 CCGACAAAG-AAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAA-CC-C---
815 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
15436779 CC----GA-
880 CCGTTTGAT
* * *
15436783 --T---CT-GG--T---C-C-G-AT-CTTAGGCTGGGAATGAACTCCGTATTCCTAAGTCAACCT
1 CTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * ** * *
15436833 ATG-AACGAGCGTGCGGGCACTCAGCCGTTCAGATGGGCGGGATGCGCTAGCCGGGGATCGATCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * *** * *
15436897 GGTCCCCCTCTACGTGTTG-TCGATCCTACTATTGCAACCCTCTGTCCGGTCCGATCTTAGACTG
131 GGTCCCCCTCTACGTGCTGCT-GATCCTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTG
* * * * **
15436961 GGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACAAGCGGGCGGACGGGCGGGCAAGCACTA
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGC-GGCGGGCACTA
* * *
15437026 CGTCGGCCAGAGAGACGGGATGCGCAAGTCATGGATCG--A------TA---GGG--T-GGCACA
258 CGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
*
15437077 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAG
323 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
15437142 CCTTCACGTGAACTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTTGAAACTTTTT
388 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT
* * * *
15437207 AAGGTTCAGGATTTTTGAAAATTTTTCGGAAGGAGTTTTGCCCCCAAACTTGGTAGACGTGATCC
453 AAGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * *
15437272 TTGTATTTCTT-TTAGCATGCACAAAAAAATTCAGGTAAAAACTCGAAGTGTACCAGATTTTGTG
518 TTGTATTT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
15437336 ACCATTTGGAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAAT
582 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * * *
15437401 CTCAATTGCTCTTTAAGGGTGTGTGAGTTCTCGAGGATTGATGAGGGATAGTGGGCCAATATAAG
647 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
* * **
15437466 GGCCAAGTACCAGCACCCATCGCACAT-ATGTGCACACACCCCCCCGG-TCCCCGATCACCGAAA
712 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGAAA
* * * * * * * *
15437529 CCCCAATTTTGCGGTTAGGTTCTCCGGTGATGCTCCGCCGATGGTGCACCGACGAAGAAAAATGT
776 CCCCAA-TGT-C-G-T-CG--AT-CAG-GCTGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGC
* * * ** * * *
15437594 GACACCAGCACATTCTCGAGCCCAGCATGTGCTGTTGGAACCCTCGGTCTAGTTCGAT
832 GGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC-CGTTTGAT
* * * *
15437652 CTTAGGCTGGGAATGAACTCCGTGTGAC-TAGACTGGGAAAGAACTCCGTATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACTCAGTATG-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * *
15437716 CACGAAACGAGCATACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGTGCAAGCCGGGGATCGATC
65 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * * *
15437781 GGGTCCCCCTCTGCGTGCTGCGCCGATCCTGCTGCC-TCAACCCTCGGTCCGGTCTGATCTTGGA
130 GGGTCCCCCTCTACGTGCT--GCTGATCCTGCTGCCGT-AACCCTCGGTCCGGTCCGATCTTAGA
*
15437845 CTGGGAATGAACTCCGCATGCCTAAGCCAA-CGAACGAAACGA---GCGGGC-GG-GGCGGGCAC
192 CTGGGAATGAACTCCGTATGCCTAAGCCAACCG-ACGAAACGAGCGGCGGGCGGGCGGCGGGCAC
* * * *
15437904 TACGCCGGCCAGAGAGACGGGATGGGCAAGCCGTGGATCGATAGGGTGTTAGGTGGGTTTAGGCA
256 TACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCA
*** * **
15437969 CATCTTCATATTTCTGCATGCCAATTATATTTTTATGGTTTGTAAATTCATACAACAGTCCCTTA
321 CATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTA
*
15438034 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTT
386 AGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTT
* * *
15438099 TTACGGTTCGGGATTTTTTAAAATTGTTTTGAAATGAGTTTTGG-CCCAAACTTGGTAGACGTGA
451 TTAAGGTTCGGGATTTTTTAAAATT-TTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
*
15438163 TCCTTGTATTTTTGTTGGCATGTACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
515 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
15438228 TGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAA
580 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
15438293 ATCTCAAATGCTCTTTAAGGGGGTGCGAGTTCTCAAGGTTTGATGAGGGATAGGGGCCCAATATA
645 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATA
* *
15438358 AGGGACC-AGTACCAGCACCCATCACACATCATATGCGCACACCCCCCCGGCCCCCCCGATCGTC
710 AGGG-CCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGG-CCCCCCGATCGTC
* * * * * *
15438422 GGAA--CC--TGCCGTCGGTCAGGTTCTCCGACGATTCTCTGGTGATGGTGCCCCAACGATGAAA
772 GAAACCCCAATGTCGTCGATCAGG--CT--G-C---TC-C-GGCGATGGTGCCCCGACGAAGAAA
* * * *
15438483 AATACGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGAT
827 AATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GTTTGAT
* * * *
15438546 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTTCATATGCTTAGACTGGGAA
1 CTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTA-A----G--
* * * * ** * * * ***
15438611 TGAACTCCGTATGCTTAGACTGGGAATGAACTCTGTCTGCCTAAGTCAACCCACGAAACGAGCGT
59 TCAAC-CC--A--C-GAAAC-GAGCGTG----CGGGC-G-CTCAG-CCGGCCA-G--A-G-G-G-
* * * ** * * * *** * * * *
15438676 GCGGG-TGCTC-AGCTGGCCAGAGGGGT-GGGATGCGCAAGT-CGGGGATTGGCCGGGTCCCCCT
103 GCGGGATGCGCAAGCCGG--GGATCGATCGGG-TCCCCCTCTAC-GTG-CT-G-CTGAT---CCT
* * * * * * * * **
15438737 -CTGCGTGCTACAATCCT-GCTGCC-GTAACC---CTTGGTCCGGTTCGATCTTAGACTGGGTAT
158 GCTGC-CG-T--AACCCTCGGT-CCGGT--CCGATCTTAGACTGG---GA-ATGA-ACTCCG--T
* * * *
15438796 GAACTCCGTATGCCTAAGCCAACTGACGAAATGA---ACGGGTGGGCAGGCGGGCACTACG-CTG
209 ---------ATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGC-GGCGGGCACTACGTC-G
* *
15438857 GCCAGAGAGATCG-GATGCGCAAGCTGTGGATTGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
263 GCCAGAGAGA-CGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTT
* ** * *
15438921 CATATTTCTGCGTGCCAATGAAATTTCTATGGCTTGTAAATTCATACAATGGTCCCTTAATCCTT
327 CATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTT
* * * *
15438986 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACAATTTTCAAAAATTTTTAAGG
392 CACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAAGG
* *
15439051 TTCGGTATTTTTTAAAATTTTTTTGGAA-AACGTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
457 TTCGGGATTTTTTAAAA-TTTTTTGGAAGGA-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTT
* *
15439115 GTATTTTTGTTGGCATGCACAAAAATATTTAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
520 GTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
*
15439180 ATTTGAATAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
585 ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
* * * *
15439245 AATTGCTCTTTAAGGGTGTGTGAGTTCTCAAGGATTGATGAGGGATAGGGGGCCAATATAAGGGC
650 AAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGC
15439310 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGT-GAGAACC
715 CAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCGATCGTCGA-AACC
*
15439374 CCAATGTAGCCGGTCAGATTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
778 CCAATGT---C-GTC-GA---TCAGGC--TGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCG
*
15439439 GCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAA-CC-C--T-C----GA-
833 GCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTTTGAT
* *
15439485 --T---CT-GG--T---C-C-G-AT-CTTAGACTGGGAATGAGCTCCGTATTCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* ** * * *
15439535 ATGAAACGAGCGTGCGGGCGCTCAGCCGTTCAGATGGGCGGGATGCGCTAGCTGGGGATCGATCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
* * * ** * * *
15439600 GGTCCCTCTCTACGTGTTG-TAGATCTTGCTGTTGCAACCCTCAGTCCGGTCCAATCTTAGACTG
131 GGTCCCCCTCTACGTGCTGCT-GATCCTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTG
* * * * *
15439664 GGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACAAGCGGGCGGACGGGCGGGCGGGTACTA
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGC-GGCGGGCACTA
* * *
15439729 CGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTTAGTCACA
258 CGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* *
15439794 TCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAATTTCATACAATGGTCCCTTAAG
323 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* *
15439859 CCTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTT
388 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT
** * *
15439924 AAGGTTCAAGATTTTTGAAAATTTTTTGGAAGGAGTTTTGCCCCCAAACTTGGTAGACGTGATCC
453 AAGGTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* * * *
15439989 TTGTATTTCTT-TTGGCATGCACAAATAAATTCAGGTAAAAACTTGAAGTGTACCAGATTTTGTG
518 TTGTATTT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTG
* *
15440053 ACCATTT-AAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGAAGCAAACCTGTAAAAT
582 ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAAT
* * *
15440117 CTCAAATGCTCTTTAACGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGAGGGCCAATATAAG
647 CTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAG
** * *
15440182 GGCCAAGTACCAGCACTTATCGCACATCATGTGCGTACACCGCCCCGACCCCCCGATCGTCGAAA
712 GGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCCGGCCCCCCGATCGTCGAAA
** * *
15440247 CTTCAGTGTCGTCGATCAGGCT-CTCCGGCGATGGTGCCCCGACGAAGAAAAATACGGCACCAGC
776 CCCCAATGTCGTCGATCAGGCTGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGC
* *
15440311 ACATGCTCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCCGGTTTGAT
841 ACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GTTTGAT
** * * * *
15440360 CTTAGACCAGAAATGAACTCAGTATGCTTAGACTAGGAATGAACTTCGTATGCCCAAGTCAACCC
1 CTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * * *
15440425 ACGAAATGAGCGTGCGGGCGCTCAGCAGGCCAGAGGGGCAGGATGCGCAAGCCGAGGATTGACCG
66 ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
** * * * * * * *
15440490 CATCCCCCTCTATGTGCTGCTGATCCTACTGCTGCAACCCTCTGTCTGGTCCGATCTTACACTGG
131 GGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGG
* ** * * * *
15440555 GAATAAACTTTGCATGCCTAAGCCAACCGACGAAATGAGCAGGCGGACGGGCAGGCGGTCACTAC
196 GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGC-GGCGGGCACTAC
* *
15440620 GTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGGTCGATGGGGTGGTAGGTGGGTTTAGGCACAT
259 GTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
* *
15440685 CTTCATATTTCTACGT-CCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
324 CTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGC
* * *
15440749 CTTCACGTGAAGTTTCATGGCAGGACGACTCATTTTCTATTTTTTACGATTTTCGAAACTTTTTA
389 CTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTA
* * * * *
15440814 CGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCTCAAACCTGGTAGACGTCATCC
454 AGGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCC
* *
15440879 ATGTA-TTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGT
518 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
15440943 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACCTGTAAAATC
583 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
*
15441008 TCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
648 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * *
15441073 GCCAAGTACCAGCACCCAACGCACATCATGTGTGCCCACCCCCCCGGCCCCCCGATCGTCGGAAC
713 GCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGAAAC
* * * * * * *
15441138 CCCAATGTCATCGGTCAGG-TTCTCCGACAATGGTGACCCGATGAAGAAAAATGCGGCACCAGCA
777 CCCAATGTCGTCGATCAGGCTGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCA
* *
15441202 CATGCTCGAGCCCAGCATGTGCTGTCGCAACCCTCGGTCCAGTTTGAT
842 CATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GTTTGAT
* * * * *
15441250 CTTAAACTAGGAATGAACTCCA-TTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTATCC
1 CTTAGACTGGGAATGAACT-CAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * *
15441314 CACGAAATGAGCGTGCAGACGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGATC
65 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * * ** * * *
15441379 GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCCACCCTCGGTCTGGTTCGATCTTATACTG
130 GGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTG
* * * *
15441444 GGAATGAACTCTGTATGCCTAAACCAATCGACGAAACGAGCGGGCGGGCGGACGGCCGGGCACTA
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GGCGGGCGGGCGG-CGGGCACTA
* *
15441509 CGTCGGCCAGAGAGACGAGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGTACA
258 CGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACA
* * *
15441574 TCTACATATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAGTGGTCCCTTAAG
323 TCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAG
* * * *
15441639 CCTTCACGCGAAGTTTCATGGCGAGACGACTCGTTTTCTATTTTTCACAATTTTCAAAAC-TTTT
388 CCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTT
* * *
15441703 AACGGTTCGAGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGAT
453 AA-GGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGAT
* * * * * *
15441768 ACTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCCAAAAACTTGAAGTGTAGAAGATTTTGT
516 CCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGT
*
15441833 GA-CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACTTGTAAAA
581 GACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAA
* *
15441897 TCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCAAATATAA
646 TCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAA
* * *
15441962 GGGCCAAGTACCAGCACCCATCACACATCATGTGCGCAGATCCCCCCGGCCCCCCGATCG-CCAG
711 GGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCGATCGTCGA-
* * * **
15442026 AACCCCAATGCCG-CCAGTCAGGTTCTCTGGTGATGCTCCGACGATGGTGCCCCGGTGAAGAAAA
774 AACCCCAATGTCGTCGA-TCAGG----C------TGCTCCGGCGATGGTGCCCCGACGAAGAAAA
* * * * * *
15442090 ATGCGGCACCAACACTTGCCCGAGTCCAGCATGTGCTGTCGTAACCCTCGGTCCAGTCTGAT
828 ATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC-GTTTGAT
*
15442152 CTTAGACTGGGAATGAACT-ACGTATGTTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
1 CTTAGACTGGGAATGAACTCA-GTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACC
* * * * ** **
15442216 CACGAAATGAGCGTGCGGGCGCTCAGTCGGCTAGAGGGGTGGGATGCGTGAGCCGGGGATCGGGC
65 CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
* * * * * ** **
15442281 GGATCCCCTTTTACGTGCTGCCGAT-CTGCTACCGTAACCCTCGGTCCTATTTGATCTTAGACTG
130 GGGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTG
* * * *
15442345 GAAATGAACTTCGTATGGCTAAGCCAACCGACGAAATGAGCGGACGGGCGGGCGGGCGGGCACTA
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGG-CGGGCGGGC-GGCGGGCACTA
* *
15442410 CGCCGGCC-GAGAGAC-AGGATGCGCAAGCCGTGGATCGATAGGGGGGTAGGTGGGTTTAGGCAC
258 CGTCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCAC
15442473 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
322 ATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAA
*
15442538 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAAC-TTT
387 GCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTT
* *
15442602 TAACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTAGACGTGA
452 TAA-GGTTCGGGATTTTTTAAAATTTTTT-GGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGA
15442667 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
515 TCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
* *
15442732 TGACCTTTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
580 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* * *
15442797 ATCTCAATTGCTCTTTAAGGGGGTGT-AGTTATCAAGGTTTTGATTGAGGGATAGGGGGCCAATA
645 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGG-TTTGA-TGAGGGATAGGGGGCCAATA
* *
15442861 TACA-GGCCTAGTACCAGCACCCTTCGCACATCATGTGCGCACACGCCCGTCC-GCCCCCCGA-C
708 TA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCC--CCGGCCCCCCGATC
*
15442923 GCCGGAAACCCCAATG
769 GTC-GAAACCCCAATG
15442939 CCGCCAGTCA
Statistics
Matches: 5250, Mismatches: 652, Indels: 501
0.82 0.10 0.08
Matches are distributed among these distances:
856 8 0.00
857 8 0.00
858 59 0.01
859 19 0.00
860 17 0.00
861 252 0.05
862 122 0.02
863 24 0.00
864 69 0.01
865 6 0.00
866 1 0.00
867 5 0.00
868 5 0.00
869 1 0.00
870 28 0.01
871 29 0.01
872 33 0.01
873 32 0.01
874 73 0.01
875 173 0.03
876 111 0.02
877 212 0.04
878 1 0.00
880 66 0.01
881 38 0.01
882 7 0.00
883 8 0.00
884 41 0.01
885 75 0.01
886 8 0.00
887 76 0.01
888 11 0.00
889 198 0.04
890 874 0.17
891 365 0.07
892 56 0.01
893 7 0.00
894 486 0.09
895 39 0.01
896 14 0.00
897 21 0.00
898 7 0.00
899 2 0.00
900 308 0.06
901 182 0.03
902 280 0.05
903 24 0.00
904 8 0.00
905 1 0.00
906 4 0.00
907 3 0.00
908 4 0.00
910 4 0.00
911 3 0.00
912 3 0.00
913 1 0.00
914 5 0.00
915 4 0.00
916 3 0.00
917 4 0.00
918 1 0.00
919 2 0.00
920 6 0.00
921 8 0.00
922 16 0.00
923 5 0.00
924 25 0.00
925 6 0.00
926 4 0.00
927 9 0.00
928 6 0.00
929 8 0.00
930 3 0.00
931 3 0.00
932 4 0.00
933 2 0.00
934 2 0.00
937 1 0.00
940 2 0.00
943 25 0.00
944 3 0.00
945 4 0.00
946 245 0.05
947 244 0.05
948 3 0.00
949 2 0.00
950 67 0.01
951 1 0.00
952 2 0.00
953 1 0.00
954 3 0.00
955 2 0.00
956 2 0.00
958 5 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (888 bp):
CTTAGACTGGGAATGAACTCAGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATCG
GGTCCCCCTCTACGTGCTGCTGATCCTGCTGCCGTAACCCTCGGTCCGGTCCGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGCGGGCGGGCGGCGGGCACTACGT
CGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCT
TCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCT
TCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTAAG
GTTCGGGATTTTTTAAAATTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTG
TATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCA
TTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCA
AATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCGATCGTCGAAACCCCA
ATGTCGTCGATCAGGCTGCTCCGGCGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATG
CCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGTTTGAT
Found at i:15442189 original size:26 final size:26
Alignment explanation
Indices: 15442153--15442203 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15442143 CAGTCTGATC
15442153 TTAGACTGGGAATGAACTACGTATGT
1 TTAGACTGGGAATGAACTACGTATGT
*
15442179 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTACGTATG
15442204 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTACGTATGT
Found at i:15444625 original size:26 final size:26
Alignment explanation
Indices: 15444596--15444646 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15444586 CCGGTCCAAT
*
15444596 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15444622 CTTAGACTGAGAATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
15444647 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15444752 original size:26 final size:26
Alignment explanation
Indices: 15444720--15444838 Score: 184
Period size: 26 Copynumber: 4.6 Consensus size: 26
15444710 CAAGTCGGGG
15444720 ATGAACTCCGTATGCTTAGACTGGGA
1 ATGAACTCCGTATGCTTAGACTGGGA
** *
15444746 ATGAACTTTGTATGCTTAGACTAGGA
1 ATGAACTCCGTATGCTTAGACTGGGA
* *
15444772 ATGAACTTCATATGCTTAGACTGGGA
1 ATGAACTCCGTATGCTTAGACTGGGA
15444798 ATGAACTCCGTATGCTTAGACTGGGA
1 ATGAACTCCGTATGCTTAGACTGGGA
*
15444824 ATGAACTCTGTATGC
1 ATGAACTCCGTATGC
15444839 CTAAGCCAAC
Statistics
Matches: 84, Mismatches: 9, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 84 1.00
ACGTcount: A:0.29, C:0.17, G:0.24, T:0.30
Consensus pattern (26 bp):
ATGAACTCCGTATGCTTAGACTGGGA
Found at i:15445546 original size:27 final size:26
Alignment explanation
Indices: 15445516--15445569 Score: 65
Period size: 26 Copynumber: 2.0 Consensus size: 26
15445506 CCGGTTTGAT
15445516 CTTAGAACCAGAAATGAAC-TCAGTATG
1 CTTAG-ACCAGAAATGAACTTC-GTATG
* *
15445543 CTTAGACTAGGAATGAACTTCGTATG
1 CTTAGACCAGAAATGAACTTCGTATG
15445569 C
1 C
15445570 CCAAGTCAAC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
26 17 0.71
27 7 0.29
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26
Consensus pattern (26 bp):
CTTAGACCAGAAATGAACTTCGTATG
Done.