Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 81 of 195
Found at i:15446776 original size:891 final size:892
Alignment explanation
Indices: 15444812--15448210 Score: 4410
Period size: 891 Copynumber: 3.8 Consensus size: 892
15444802 ACTCCGTATG
* *
15444812 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACTGACGAAACAAGCGGGCGGACGG-C-GG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGACGGG
* *
15444875 -GGGCACTATGTCGGCCAGAGAGACGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
** * *
15444939 TTAGGCACATCTTCATATTTCTGCATTTCAATACCATTTTTATGGCTTGTAATTTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
15445004 TCCCTTAAGCCTTCACGTGAACTTTCATGGCAATACGACTCGTTTTCTATTTTTCACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * ** *
15445069 AAACTTTTTAAGGTTCAGGATTTTAGAAAA-TTTTTCGGAAGGAGTTTTGCCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
15445133 GACGTGATCCTTGTATTTCTT-TTGGCATGCACAAAAAAATTCAGGTAAAAACTTGAAGTGTACC
326 GACGTGATCCTTGTATTT-TTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
15445197 AGATTTTGTGACCATTTGGAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGAAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
15445262 CCTGTAAAATCTCAAATGCTCTTTAAACGGGGTGTGAGTTCTCGAGGTTTGATGAGAGATAGAGG
455 CCTGTAAAATCTCAAATGCTCTTT-AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
15445327 GCCAATATAAGGGCCAAGTAACCAGCACCTATCGCACATCATGTGCGCACACCGCCCCG-ACCCC
519 GCCAATATAAGGGCCAAGT-ACCAGCACCCATCGCACATCATGTGCGCCCACC-CCCGGCCCCCC
* ** * * * *
15445391 CGATCGTCGAAACTTCAAGTGTCGTCGATCA-GTCTCTCCGGCGATGGTGCCCCGACGAAGAAAA
582 CGATCGTCGGAACCCCAA-TGCCGTCGGTCAGGT-TCTCCGACGATGGTGCCCCGATGAAGAAAA
* * * *
15445455 ATGCGACACCAGCACATG-CTCGAGCCCAGCATGTGCTG-CACAACCCTCGATCCGGTTTGATCT
645 ATGCGGCACCAGCACATGCCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCTGATCT
* * * * *
15445518 TAGAACCAGAAATGAACT-CAGTATGCTTAGACTAGGAATGAACTTCGTATGCCCAAGTCAACCC
710 TA-AACTAGGAATGAACTCCA-TATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* ** *
15445582 ACGAAATGAGCGTGCGGGCGCTCAGTAGGCCAGA-GGGCAGGATGCGCAAGCCGAGGATTGACCG
773 ACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA-TGACCG
* * * * * *
15445646 CATCCCCCTCTATGTGCTGCTGATCCTACTGCTACAACCCTCTGTCCTGGTCTGAT
837 CATCCCCCTCTACGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCTGGTCTGAT
* * * * * * *
15445702 CTTACACTGGGAATGAAACTTTGCATGCCTAAGCCAACCGACGAAATGAGCAGGCGGACGGGCAG
1 CTTAGACTGGGAATG-AACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGACGG
** * * * *
15445767 GCGATCACTACGTCGGCCAGAGAGACGAGATGCGCAATCCGTGGGTCGATGGGGTGGTAGGTGGG
65 GCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
*
15445832 TTTAGGCACATCTTCATATTTCTACAT-CCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
130 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * *
15445896 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGTAGGACGACTCATTCTCTATTTTTTACGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * *
15445961 GAAACTTTTTACGGTTTGGGATTTTTTAAAATTTTTTTGGAAGGAGTTTTGGCCTCAAACCTGGT
260 GAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
15446026 AGACGTCA-CCATGTAATTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGTGTACA
325 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * * *
15446090 AGA-TTTGTGTTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACGGCCACT-ACAGCAA
390 AGATTTTGTG-ACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
15446153 ACCTGTAAAATCTCAAATGCTCCTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
15446218 GCCAAATATAAGGGCCAAGTA-CAGCACCCCAACG-ACATCATGTGTGCCCACCCCCGGCCCCCC
519 GCC-AATATAAGGGCCAAGTACCAGCA-CCCATCGCACATCATGTGCGCCCACCCCCGGCCCCCC
* * * *
15446281 CGATCG-C-GAACCCCCAATGTCATCGGTCAGGTTCTCCGACAATGGTGACACCGATGAACGAAA
582 CGATCGTCGGAA-CCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTG-CCCCGATGAA-GAAA
*
15446344 AATGCGGCACCAGCACATGCCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTTTGATC
644 AATGCGGCACCAGCACATGCCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCTGATC
* * *
15446409 TTAAACTAGGAATGAACTCCATTTGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTTATCCCA
709 TTAAACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCA
* * * * *
15446474 CAAAATGAGCGTGCAGACGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCAGGGATCGACCGG
774 CAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT-GACCGC
* * * *
15446539 GTCCCCCTCTGCGTGCTGCCGATCCTGCTACCGCCACCCTCGGT-CTGGT-TCGAT
838 ATCCCCCTCTACGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCTGGTCT-GAT
* * * *
15446593 CTTATACTGGGAATGAACTCTGTATGCCTAAGCCAATCGACGAAACGAGTGGGCGGGCGGACGGG
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGACGGG
*
15446658 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
15446723 TTAGGTACATCTACATATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * * **
15446788 TTCCTTAAGCCTTCACGCGAAGTTTCATGGCGAGATGACTCGTTTTCTATTTTTCACAATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * * *
15446853 AAACTTTTAACGGTTCGAGATTTTTTAAAACTTTTTCAGAAGGAGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * * *
15446918 GACGTGATACTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGCCAAAAACTTGAAGTGTAGAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
15446983 GATTTTGTGA-CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCGACTGGCAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
15447047 TTGTAAAATCTCAAATGCTGTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
15447112 AAATATAAGGGCCAAGTACCAGCACCAGCACCCATCACACATCATGTGCGGACACC-CCCCCGGC
521 CAATATAAGGGCCAAGT------ACCAGCACCCATCGCACATCATGTGC-G-C-CCACCCCCGGC
* * * *
15447176 CCCCCCGATCGCCAGAACCCCAATGCCGCCAGTCAGGTTCTCTGCTGATGCTCCGACGATGGTGC
577 CCCCCCGATCGTCGGAACCCCAAT---GCC-GTC-GG---TCAG--G-TTCTCCGACGATGGTGC
* * * * ** *
15447241 CCCGATGAAGAAAAATGCGGTACCAACACTTGCC-CGAGTCCAGCATGTGCTATCGTAACCCTCG
631 CCCGATGAAGAAAAATGCGGCACCAGCACATGCCTCGAGCCCAGCATGTGCTGCCGCAACCCTCG
* * * * * *
15447305 GTCCAGTCTGATCTTAGACTGGGAATGAACTACGTATGTTTAGACTGGGAATGAACTCCGTATGC
696 ATCCAGTCTGATCTTAAACTAGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * **
15447370 CTAAGTCAACCCACGAAATGAGCGTGCGGGCGCTCAGTCGGCTAGAGGGGTAGGATGCGTGAGCC
761 CTAAGTCAACCCACAAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCC
** * * * *
15447435 GGGGATAGGGCGGATCCCCTTTTACGTGCTGCCGAT-CTGCTACTGTAACCCTCGGTCCT-GTCT
826 GGGGAT-GACCGCATCCCCCTCTACGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCTGGTCT
15447498 GAT
890 GAT
* * * * * * * *
15447501 CTTAGACTGGAAATGAACTCCGTATGGCTAAGCCAACCGATGAAATGAGCGGACGGGCGGACGGA
1 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGACGGG
* *
15447566 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGG-GGTAGGTGGGT
66 CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
15447630 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTAGGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
*
15447695 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
15447760 AAACTTTTAACGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTGGCCCCAAACATGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
15447825 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAACATTCAGCTAAAAACTCGAAGTGTACA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACA
* * * *
15447890 AGATTTTGTGACCTTTTGAGAAAAGTGTCCCCGTTTCAGACAATTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
15447955 CCTGTAAAATCTCAAATGCTCTTTAAGGGGTGTGTGAGTTATCGAGGTTTGATGAGGGATAGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGG-GTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
15448020 GCCAATATACGGGCCAAGTACCAGCACCCTTCGCACATCATGTGCGCACACCCCGTCCGCCCCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCCCACCCC--CGGCCCCCC
* * * * * * *
15448085 C-AACGTCGGAACCCCAATGCCGCCAGTCAGATTCTCCGGCGGTGGTGCCCCGGTGAAGAAAAAT
582 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGATGAAGAAAAAT
* * *
15448149 GGGGCACCAGCACATGCC-CGAGCCCAGCATGTACTGCCGCAACCCTCGA-CCTAGTCCGATCT
647 GCGGCACCAGCACATGCCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCC-AGTCTGATCT
15448211 AAGTCAACCC
Statistics
Matches: 2181, Mismatches: 271, Indels: 112
0.85 0.11 0.04
Matches are distributed among these distances:
888 25 0.01
889 19 0.01
890 189 0.09
891 421 0.19
892 339 0.16
893 217 0.10
894 117 0.05
895 3 0.00
897 6 0.00
898 16 0.01
899 3 0.00
900 23 0.01
901 11 0.01
902 8 0.00
903 15 0.01
904 35 0.02
905 2 0.00
906 2 0.00
907 226 0.10
908 161 0.07
909 247 0.11
910 72 0.03
911 10 0.00
912 14 0.01
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGACGGACGGG
CGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCCCACCCCCGGCCCCCCCGAT
CGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGGTGCCCCGATGAAGAAAAATGCGG
CACCAGCACATGCCTCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCCAGTCTGATCTTAAACT
AGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACAAAATG
AGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATGACCGCATCCCCCT
CTACGTGCTGCCGATCCTGCTACTGCAACCCTCGGTCCTGGTCTGAT
Found at i:15447354 original size:26 final size:26
Alignment explanation
Indices: 15447318--15447368 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15447308 CAGTCTGATC
15447318 TTAGACTGGGAATGAACTACGTATGT
1 TTAGACTGGGAATGAACTACGTATGT
*
15447344 TTAGACTGGGAATGAACTCCGTATG
1 TTAGACTGGGAATGAACTACGTATG
15447369 CCTAAGTCAA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.14, G:0.27, T:0.29
Consensus pattern (26 bp):
TTAGACTGGGAATGAACTACGTATGT
Found at i:15449076 original size:26 final size:26
Alignment explanation
Indices: 15449047--15449099 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15449037 CCAGTTTGAT
*
15449047 CTTAAACTGGGAATGAACTCCATATG
1 CTTAAACTGGGAAAGAACTCCATATG
* *
15449073 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAAACTGGGAAAGAACTCCATATG
15449099 C
1 C
15449100 CTAAGTTAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAAACTGGGAAAGAACTCCATATG
Found at i:15449990 original size:26 final size:26
Alignment explanation
Indices: 15449951--15450001 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15449941 CTGGTCCAAT
*
15449951 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15449977 CTTAGACTGAGAATGAACTCCGTAT
1 CTTAGACTGAGAATGAACTCCGTAT
15450002 ACCTAAGTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.20, G:0.24, T:0.27
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15451786 original size:25 final size:26
Alignment explanation
Indices: 15451758--15451809 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15451748 CTGGTCCGAT
*
15451758 CTTAGAC-TGAAATGAACTCCGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
* *
15451783 CTTAGACAGGGAATGCACTCCGTATG
1 CTTAGACAGGAAATGAACTCCGTATG
15451809 C
1 C
15451810 CTAAGTCAAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.29, C:0.23, G:0.23, T:0.25
Consensus pattern (26 bp):
CTTAGACAGGAAATGAACTCCGTATG
Found at i:15454489 original size:26 final size:26
Alignment explanation
Indices: 15454453--15454505 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15454443 CTGGTCTGAT
*
15454453 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15454479 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15454505 C
1 C
15454506 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15455367 original size:26 final size:26
Alignment explanation
Indices: 15455338--15455390 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15455328 CCGGTCCGAT
*
15455338 CTTAGTCTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
15455364 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
15455390 C
1 C
15455391 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15456065 original size:902 final size:899
Alignment explanation
Indices: 15448209--15457222 Score: 11601
Period size: 885 Copynumber: 10.0 Consensus size: 899
15448199 CTAGTCCGAT
* * *** * *
15448209 CTAAGTCAACCCATGAAACGAACGTGCGGGCGCTCAGCCATTCAGATGGGCGGGATGCGCAAGTC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * ** *
15448274 -AGGGATCGATCGGGTCCACATCTGCGTGCTACCGATCCTGCTGCAACAATCCTCGATCCGGTC-
66 GA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTCT
* ** * * * *
15448337 AGATCTTTGACTGGGAATGAACTTTGTATGCCTAAGCCAACTGATGAAATGAGCGGGCAGACGGG
130 A-ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACG-AA--A-CGAGCAGATGGG
** * * * * *
15448402 CGGGCGGGCACTACGCCAACCAGACAGACGGGATGCGCAAGTCGTGCATTGATAGGGTGGTAGGT
190 CGGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
*
15448467 GGGTTTAAGCACATCTTCATATTT-TAGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
255 GGGTTTAGGCACATCTTCATATTTCT-GCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* ***
15448531 AATGGTCCCTTAAGCCTTCACGTGAACTTTCATGGCAAGACGACTCGTTTTCTATTTTTCCCAAT
319 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * *
15448596 TTTTGAAACATTTTACGATTCAAGATTTTTTGAAATTTTTTCGGAAGGAGTTTTGTCCCCAAACT
384 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * *
15448661 TGGTAGACGAGATCCTTGTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
449 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
* * * * *
15448726 TACAAGATTTTGTG-TCATTTGCAAAAAGTGTCCCCATTTTAGACACTTTAATGGTTACTAGCAG
514 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
15448790 CAAACCTAT-AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
579 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
*
15448854 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
644 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCC
* * * * *
15448919 GCCGATCGTCGGAACCCCAATGTCGTCGGTCAGGATCT-------T-CT--GGCAATGGTGACCC
709 CCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCC
* ** * * * *
15448974 GACGAAGAAAAATACAACACCAGCACATGCTCAAGCCCAGCATGTGCTGCTGCAACCCTCAGTCC
774 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* ** * * *
15449039 AGTTTGATCTTAAACTGGGAATGAACTCCATATGCTTAGACTGGGAAAGAACTCCGTATGC
839 GGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
15449100 CTAAGTTAACCCACGAAACGAGCGTGCGGACGCTCAGCTGGCCAGAGGGGCGGGATGGGCAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* ** * * * * * * *
15449165 GGGGATCGG-CCAGTCCCCCTCTGCGTGCTGCCAATCCTGCTACCTCAACCCTCGGTCTGGTTTA
66 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTCTA
* * * **
15449229 ATCTTATACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGATG
131 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGATGGGC----G
* * *
15449294 GGCGGGCAGTACGTCGGCCAGGGAGAC-AGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
192 GGCGGGCACTACGCCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
15449358 GGTTTAGGCACATCTACATATTTCTGCAAGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
256 GGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
15449423 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACG-TAT
321 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT-T
** * * *
15449487 TTCAAAACTTTTTACGGTTCAAGATTTTTTAAAATTTTTTTGGAAGGATTTTTGGCCCCAAACTT
385 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * *
15449552 AGTAGACGTGATCCTTTTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCTAAGTGT
450 GGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGT
* * * *
15449617 GCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGCCAAC
515 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
* * **
15449682 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCGAGGTTTGATGGGGGATACC
580 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
15449747 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAACCCCCCCGGCAC
645 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCC-GCCC
** ** *
15449812 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCTAGCGATGCTCTAGCGATGCTGCCC
708 CCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCC
* * * *
15449877 CGACGAAGAAAAATACGGCACCATG-ACGTGCCCGAGCCCAGTATGTGCTGCCGCAACCCTTGGT
773 CGACGAAGAAAAATGCGGCACCA-GCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
15449941 CTGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGAGAATGAACTCCGTATAC
837 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * ** * *
15450004 CTAAGTCATCCTACAAAAACAAGCGTGCGGGCGCTCAACCGGCCAGAAGGGCTAGATGTGCAAGT
1 CTAAGTCAACCCAC-GAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGC
* ** * * * * * *
15450069 CGAGGATCGGCCGGGTCCCCCTCTGCGTGCTGTTGATCCTACTGCTGAAACCCTTGATCTGATCC
65 CGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTCT
* * * * *
15450134 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCGACTGACGAAACGAGCGGGTTGGCGGGT
130 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-AGAT---GGGC
* * * *
15450199 GGGCGGGTACTACGCCGGCCAGAGAGACGGGATGCGCAAGCTGTGGATCAATAGGGTGGTAGGTG
191 GGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
15450264 GGTTTAGGCGCATCTTCATATTTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
256 GGTTTAGGCACATCTTCATA-TTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
15450329 GTGGTCCCTTAAGCCTGCACGTGAATTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
320 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * * * *
15450394 TTTGAAACATTTTGCGGTTTGGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTT
385 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * *
15450459 GGTAGATGTGATCCTTGCATTTTTTTTGGGGGCATGCAAAAAAAAATTCAGCCAAAAACTCAAAG
450 GGTAGACGTGATCCTTGTATTTTTTTT---GGCATGCACAAAAAAATTCAGCTAAAAACTCAAAG
* *
15450524 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGCC
512 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
* * *
15450589 AACAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGTGTTCTCGAGGTTTGATGGGGGAT
577 AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
** *
15450654 ACCGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGC
642 AGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCC
* * * ** * *
15450718 CCCCCGATTGCCGGAACCCCAATGCCGCCTCTCAGGTTCTCAGGCGATGCTCCGGCGATGGTGGC
707 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* **
15450783 CCGACAAAGAAAAATGCGGCACCAGCACATGCCAAAGCCCAGCATGTGCTGCCGCAACCCTCGGT
772 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * * * *
15450848 CCGGTTCGATCTTAAACT-GGAATGAACTTTCGTATGCTTAGACAGGGAATGCACTCCATATG-
837 CCGGTCCGATCTTAGACTGGGAATGAAC-TCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * ** * *
15450910 CTAAGTCAACCCATGAAACAAGCGTGCCGGTACTCA-CTCGGCCA-AAGGGCAGGATGCGCAAGC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGC-CGGCCAGAGGGGCGGGATGCGCAAGC
* * * * * *
15450973 CGGGGATCGGCCAGGTCCCCCTATGCGTGCTGTCGATCCTACTGTCGCAACCCTC-AGTCCGGTC
65 CGAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGA-TCCGGTC
* *
15451037 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GTGTGGGCGG
129 TAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG-ATGGGC--
* * * * *
15451101 GTGGGCAGGCACTACGTCGGCTAGAGAGACGTGATGCGCAAGCCGTGGATCGATAGGGT-ATAGG
191 --GGGCGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGG
* * * * *
15451165 TGGGTTTAGGCACATCTTCATATTTTTACGTGCCAAAGCCATTTTTGTGGCTTGTAAATTCATAC
254 TGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATAC
* * *
15451230 AATGGTCCCTTAAGCCTTCACATGAAGTTTCATGGCAAAATGACTCGTTTTCTATTTTTCATGAT
319 AATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGAT
* * * * *
15451295 TTTTGAAACATTTTGCGGTTCGGGATTTTTTTAAATTTTTTCGGAAGGATTTTTGGCCCCAAACT
384 TTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * * *
15451360 TGGTAGATGTGATCCTTGCATTTTTTTTGGCATGCAAAAAAAAATTCAGCCAAAAACTCAAAGTG
449 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
*
15451425 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGGCAG
514 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
15451490 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGAGGAGGGATAG
579 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * **
15451555 GGGGCCAATATACGGGCCAAGTACCAGCACCCATTGCACATCATGTGCGCACACCCCCTGGCCCC
644 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCC
* *
15451620 CCCAATC-TCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCAGG-GATGCTCCGACGATGGTGCC
709 CCCGATCGT-CGGAACCCCAATGCCGTCGGTCAGGTTCTCC-GGCGATGCTCCGGCGATGGTGCC
* * * * * *
15451683 CCGACAAAGAAAAATGCGACACCAACACATGCCCAAGCCCAGCATGTGCTGTCGTAACCCTCGGT
772 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
15451748 CTGGTCCGATCTTAGACT-GAAATGAACTCCGTATGCTTAGACAGGGAATGCACTCCGTATGC
837 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
15451810 CTAAGTCAACCCACGAAACAAGCGTGCCGACGCTCAGTCGACCAGAGGGGCGGGATGCGCAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * ** * * **
15451875 GAGGATCGATTGGGTCCCCCTCTGTGTGCTATCGATCCTACTACTGCAACCCTC-AGTCCAAT-T
66 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGA-TCCGGTCT
** * * *
15451938 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAATTGACGAAACGAACGGGTGGGCGGG
130 -AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGATGGGCGGG
** * * *
15452003 CGGGTGGTCACTACATCGGCCAAAGAGACGAGATGCGTAAGCTGTGGATCGATAGGGTGGTAGGT
194 C--G-GG-CACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * *
15452068 GGGTTTAGGCACATCTTCATATTTCTACATCCCAATGCCATTTTTATGACCTGTAAATTCATACA
255 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* * *
15452133 ATGGTCCCTTAAG-CTTCACGTGAAATTTCCTGGCAAGACGACTCGTTTTATATTTTTCATGATT
320 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
* * * * *
15452197 TTCGAAACTTTTTGCGGTTC-AGGATTTTTTAAAATTTTTTCAGAAAGTGTTTTGGCCCCAAACT
385 TTTGAAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
** * * *
15452261 TCATAGACATGATCCTTGTATTTTTTTCGGCATGCTCAAAAAAATTCAGCTAAAAACTCAAAGTG
449 TGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTG
*
15452326 TACAAGATTTTGAGACCATTTGAAAAAAGTGT-CCCATTTCAGACACTTTAATGGCTACTGGCAG
514 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* *
15452390 CAAACCTGTAAAATCCCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAG
579 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
15452455 GGGGCCAATATAAGGGCCAAGTACCAGTACCCATCACACATCACT-TGCGCACACCCCCCCGACC
644 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCA-TGTGCGCACACCCCCCCG-CC
* * * * *
15452519 CCCCCGATCGCCGGAACCCTAATGCCGTCGGTTAGGTTCTCCGGCGATGCTCCAGTGATGGTGCC
707 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTG-C
** * * *
15452584 CCCGGTGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAACATGTGCTGCCGTAAACCTCGG
771 CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGG
* * * * * * *
15452649 TCTGGTCCAATCTTAGACTGCGAATGAACTCCATTTGCTTAGACTGCGAATGAACTCTGTATGC
836 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * *
15452713 CTAAGTCAACCCACGGAACGAACGTGCGGGCGCTCAGCCGACCAGAGGGGCAGGATGCGCAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * *
15452778 -AGGGATCGGTCGGGCCCCCCTCTGCGTGTTGCCAATCCTGCTGCCGTAACCCTCGGTCCGGTCT
66 GA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTCT
* * *
15452842 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-ACGGGCAGGC
130 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGATGGGCGGGC
* * * * * *
15452903 GGGCATTATGTCGGCCAGAGAGACGGGATGCGCAAGCCATGCATCGATAGGGTGGTAGGTGGGTT
195 GGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* * * * *
15452968 TAGGCACATCTTCAAATTTCTACGTGCCAATGCCTTTTTTATGGCTTGTAAATTCATTCAATGGT
260 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
15453033 CCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
325 -CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
* *
15453098 AAACTTTTTACGGTTC-AGGATTTTTTGAAATTTTTTCGGAAGCAGTTTTGGCCCCAAACTTGGT
389 AAACTTTTTACGGTTCGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
** * * *
15453162 AGACGTGATCCTTGTATTTTCGTTGGCATGCACAAAAAAATTCAGCTACAAACTCGAAGTGAACA
453 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* *
15453227 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATTGCTACTGGCAACAAA
518 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * *
15453292 CTTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGCTGAGGGATAGGGGG
583 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
15453357 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCA
648 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCG
* *
15453422 ATC-TCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGACGATGGTGCCCCAAC
713 ATCGT-CGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGAC
* * * * *
15453486 GAAGAAAAATGAGACACCAACACATGCCCGAGCCCAGCATGTGGTGTCGCAACCCTCGGTCCGGT
777 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* *
15453551 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCATGTGC
842 CCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * * * * *
15453609 CTAAGTCAACCCATGAAATGAGCATGCGGGCGCTCCGTCGACCAGAGGGGTGGGATGCGTAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * *
15453674 -AGGGATCGGTCGGGTCCCCCTCTACGTGCTGCTGATCCTACTCCCG-AGACCCTCGGTCTGATC
66 GA-GGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCA-ACCCTCGATCCGGTC
*
15453737 CAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAAC--G-A-ATGGGCGGG
129 TAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGATGGGCGGG
* * *
15453798 CGGGCCCTACGCCGGCCAGAGAGAC-AGGTTGCGCAAGCCGTGGATCGGTAGGGTGGTAGGTGGG
194 CGGGCACTACGCCGGCCAGAGAGACGA-GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* * *
15453862 TTTAGGCACATCTTCATAATTCTGCATGCCAATACCATTTTTATGGCTTGTAAATTGATACAATG
258 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
15453927 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAACATGACTCGTTTTCTATTTTTCATGATTTTT
323 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* ** * **
15453992 GAAACTTTTTGCTTTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGGT
388 GAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * * *
15454057 AGACATTATCCCTATATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
453 AGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
* *
15454122 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGTAGCAAA
518 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
15454187 CCTATAAAATCTTAAATGCTCTTTAAGGGTGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGG
583 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * * *
15454252 CCAATATAAGGGCCATGTACCAGCATCCATCGTACATCATGTGCACACAACCCCTCCGGCCCCCC
648 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCC-CCCGCCCCCC
* * * *
15454317 CGATCG-CTGGAACCACAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGGGGATGGTGCACCG
711 CGATCGTC-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCG
* *
15454381 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGATCTG
775 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCG
* *
15454446 GTCTGATCTTAGATTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
840 GTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
15454506 CTAAGTTAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGACCAGAGGGGTGGGATGCGTAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * *
15454571 GGGGAT-AGTCGAGTCCCCCTCTGCGTGCTGCCGATCCTGCTACTGCAACCCTC-AGTCCGGTTT
66 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGA-TCCGGTCT
* * * * * *
15454634 GACCTTAGATTGGTAATAAACTTCGTATGCCT-----------CGAAACGAGCA-A---GCGGGC
130 AATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGATGGGCGGGC
* * *
15454684 GGCCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
195 GGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
** * *
15454749 TAGGCACATCTTCATATTTCTGTGTGGCAATGCCTTTTTTATGGCTTGTAAATTCATACAATGGT
260 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * * * * *
15454814 CCCTTAAGCCTTCACGTGAAGTTTCATCGCAAGATGACCCGTTTTCTATTTTTCA-CAATTTTCA
325 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGA
* * *
15454878 AGACATTTTACGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCTCCAAACTTGGTA
390 A-ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
15454943 GACATAATCCTTGTATTTTTGTTGGCATGCA-AAACAAAATTCAGCTAAAAACTCAAAGTGTACA
454 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAA-AAAATTCAGCTAAAAACTCAAAGTGTACA
* * *
15455007 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGATACTTTAACGGCTACTGCCAGCAAA
518 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
** *
15455072 CCCATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGG
583 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
15455137 CCAACATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTTCCCGCCCCCC
648 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC--CCCGCCCCCC
** *
15455202 CGATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGGCGATGCTCCGGTGATGGTGCCCCGA
711 CGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGA
* ** * * *
15455267 TGAAGAAAAATATGGCACCAGCACACGCCCGAGCCCAGTATGTGCTGGCGCAACCCTCGGTCCGG
776 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
* *
15455332 TCCGATCTTAGTCTGGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTCCGTATGC
841 TCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
** *
15455391 CTAAGTCAACCCGTGAAACGAGCGTACGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * * * * * *
15455456 GAGGATCGGTCGGGTCCCCCTCTGCGTGCAGCCAATCCTGCTGCCGTAACCCTCGATCAGATCTG
66 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTCTA
*
15455521 ATCTTAGACTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCAGATGGGCGGGCG
131 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGATGGGCGGGCG
* * *
15455586 GGCACTACGCCGGCTAGAGTGACGAGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGTTT
196 GGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* *
15455651 AGGCACCTCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTC
261 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * **
15455716 CCTTAAGCCTTCATGTCAAGCTTCATGGCAAGACGACTCGTCTTCTATTTTTC-TTTTTTTTGGA
326 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT-GA
* *
15455780 AACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAAGTTGGTA
390 AACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAACTTGGTA
* * *
15455845 GGCGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAACTAAAAACTCGAAGTGTACAA
454 GACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAA
15455910 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAACT-GCTACTGGCAGCAAA
519 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA-TGGCTACTGGCAGCAAA
*
15455974 CCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
583 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * *
15456039 CCAATATAAGGGCCAAATACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCCCCCCG
648 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCG
** * ** ** * * **
15456104 ATCGTCAAAACCCTAATGCCACCGGTCAGGTTCTCCGATGATGCTCCGACGATGGTGCCCGGGGG
713 ATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACG
* * * * * * * * *
15456169 AAGAAAAATGCAGCACCAGCACCTACCTGAGCCCAGCATGTGCTACCGCAACCCTTGATTCAGTC
778 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * *
15456234 TGATCTTAGACTGGGAATGAACTCCGTATGCCTACATTGGGAATGAACTCCGTATGC
843 CGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
* * * * *
15456291 CTAAGTCAACGCACGAAACAAGCATGAGGGCGCTCAGCCGGCCAGAGGGGC-GGATGCGCATGCC
1 CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
* * ** ** * * * * * * * *
15456355 GGGGATCGGCCATGTCCCCCTCTATGTGTTGCTGATCCTATTGCAGGAACCCTCGGTCTGGTCCA
66 GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTCTA
* * * * ** *
15456420 ATCTTAGACTGGGAATGAACTGCATATGCATAAGCCAACCGACGAAACGAGCGGGCGGGCGAGCG
131 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGATGGGCGGGCG
* *
15456485 GGCACTATGCCGGCCAAAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
196 GGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* **
15456550 AGGCAC-TCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
261 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * * * * *
15456614 CCTTAAGCCGTCATGTGAAGTTTAACGGCAAGACGACTCATTTTCTATTTCTCATGATTTTTGAA
326 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
* * * * * * *
15456679 ACTTTTTACGGTTCGAGATTTTTTTAAATTTTTTTGAAAAGAGTTTTGGCCCTAAACATGGTAGG
391 ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
15456744 CGTGATCCTTGTATATTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
456 CGTGATCCTTGTAT-TTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAG
* * *
15456809 ATTTTATGACCATTTGAAATAAGTGTCCCCATTTCAGACACTTTAATCGCTACTGGCAGCAAACC
520 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* *
15456874 TGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGAGGCC
585 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
15456939 AATATAAGGG-CAAGTACCAGCACCCATCCCACATCACACATCATGTGCGCACACCCTCCCGGCC
650 AATATAAGGGCCAAGTACCAG----CA--CC-CATCGCACATCATGTGCGCACACCC-CCCCGCC
* * * * * *
15457003 CCCCCGATCGTTGGAACCCCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGACGATGGTCCC
707 CCCCCGATCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCC
* *
15457068 CCGACGAAGAAAAATGCGGCGCCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTTGGT
772 CCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* * * *
15457133 ACAGTCTGATCTTAGACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGAACTCCAG-ATGC
837 CCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCC-GTATGC
15457196 CTAAGTCAACCCACGAAACGAGCGTGC
1 CTAAGTCAACCCACGAAACGAGCGTGC
15457223 TAGAGGGGCG
Statistics
Matches: 7143, Mismatches: 855, Indels: 236
0.87 0.10 0.03
Matches are distributed among these distances:
884 15 0.00
885 697 0.10
886 82 0.01
887 3 0.00
888 2 0.00
889 3 0.00
890 381 0.05
891 114 0.02
892 103 0.01
893 7 0.00
894 39 0.01
895 451 0.06
896 471 0.07
897 542 0.08
898 480 0.07
899 438 0.06
900 541 0.08
901 638 0.09
902 584 0.08
903 216 0.03
904 321 0.04
905 269 0.04
906 185 0.03
907 335 0.05
908 7 0.00
909 1 0.00
910 218 0.03
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (899 bp):
CTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCC
GAGGATCGGTCGGGTCCCCCTCTGCGTGCTGCCGATCCTACTGCCGCAACCCTCGATCCGGTCTA
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGATGGGCGGGCG
GGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAA
ACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGCCCCCCCGATC
GTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTCCGGCGATGGTGCCCCGACGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCCGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGC
Found at i:15459964 original size:26 final size:26
Alignment explanation
Indices: 15459935--15459987 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15459925 CCGGTCCGAT
*
15459935 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
15459961 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
15459987 C
1 C
15459988 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:15463091 original size:26 final size:26
Alignment explanation
Indices: 15463055--15463104 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15463045 CCGGTCTGAT
*
15463055 CTTACACTGGGAATGAACTTTGTATG
1 CTTACACTGGGAATGAACTCTGTATG
*
15463081 CTTAGACTGGGAATGAACTCTGTA
1 CTTACACTGGGAATGAACTCTGTA
15463105 CGTCTAAGTC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.32
Consensus pattern (26 bp):
CTTACACTGGGAATGAACTCTGTATG
Found at i:15464384 original size:878 final size:876
Alignment explanation
Indices: 15461624--15465753 Score: 5136
Period size: 878 Copynumber: 4.7 Consensus size: 876
15461614 TCTGGCGATG
* *
15461624 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATAAAGTT
1 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * *
15461689 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACTTTTTGCGGTTGGGGATTTT
66 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTT
* * *
15461754 TTAAAATTTTTTCGGAAGAAGTTTT-GCCCCTAAACTTGGTAGACGTGCTCTTTGTATTTTTGTT
131 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCC-AAACTTGGTAGACGTGATCCTTGTATTTTTGTT
*
15461818 GGCATGCACAAAAAAATTCAGTTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
195 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
15461883 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
260 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
15461948 AAGGGGGTGTGAGTTCTCAAGGTTTGTTGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
325 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * *
15462013 ACCCATCGCACATCATGTGCACACACCCCCTC-GACCCCCCGATCGCCGAAACCCCAATGTCGCC
390 ACCCATCGCACATCATGTGCGCACACCCCC-CGGCCCCCCCGATCGTCGAAACCCCAATGCCGCC
* * * * *
15462077 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCTCGAAGAAGAAAAATGCAGTACCAACACA
454 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACA
*
15462142 TGCCCGAGCCCAGCATATGCTGTCACAACCCTCGGTCCAGTCCAATCTTAGATAGGCAATGAACT
519 TGCCCGAGCCCAGCATGTGCTGTCACAACCCTC--T---GT-C---C--------G----G---T
* * * * *
15462207 CCATATGCTTAGACTGGGAATGAACT-TCGTATGCCTAAGTCAACCCACGAAACAAACATGCAGG
560 CC-GATGCTTAGACTGGGAATGAACTCT-GTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * * * * * *
15462271 CGCTCAGCCGGCTAGAAGGGCAGGATGCACAAGCCAGGGATCGGCCAGCTCCGCCTCTATGTGCT
623 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCT
* ** * * * *
15462336 GCTGATCCTGCTACTGTAACCCTTGGTCTGATCCAATCTTAGAATAGGAATGAACTCCGTACACC
688 GCCGATCCTGCTACTGTAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATACC
** * * *
15462401 TAAGCCAACCGATAAAACAAGCGGGTGGGCG-GACGGGCGGGCACTACACCGGCCAGAGAGACAG
753 TAAGCCAACCGACGAAACGAGC-GG-GCGCGAG-CGGGCGGGCACTACACCGGCCAGAGAGACGG
15462465 GATGCGCAAGCCGTGGATCGATAGGGTGGTA-GTGGGTTTAGGCACATCTTCATATTTCTAC
815 GATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
* * * * *
15462526 GTGCCGATTCCTTTTTTATGGCTTGTAAATTCATACAATGCTCCCTTAAGCCTTCATGTGAAGTT
1 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * *
15462591 TCATGGCAAGATGACTTGTTTTCCATTTTTCAAGATTTTCGAAACTTTTTACGGTACGGGATTTT
66 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTT
*
15462656 TTAAAATTTTTTCGGAAGG-GTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTTTTTTTGTTG
131 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * *
15462720 GCATGCATAAAAAAATTCAGCTAAAAACACGAAGTGTACAAGATTTTGTTACCATTTGAAAAAAG
196 GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
* * * *
15462785 TGTCCCCATTTCAGACACATTAATAGCTACAGGCAGTAAACCTGTAAAATCTCAAATGCTCTTTA
261 TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
* *
15462850 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCATTATAAAGGCCAAGTACCAGCA
326 AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
* * * * * *
15462915 CCCATCGCACATCATGTGCGCACACCCCTCGG-GCCCCCGATCATCGGAACCACAATGCCGTCGG
391 CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGG
* * * * *
15462979 TCAGGTTCTTCGGCGATGCTCCGATGATGGTGCCCCGACGAAGAAAAATGCGGCA-CAAC-C---
456 TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATG
* * * ** **** **
15463039 CTCG-GTCCGGTC-TGAT-CT-T-AC-A--CTGGGAATGAACTTTGTATGCTTAGACTGGGAATG
521 CCCGAGCCCAG-CATG-TGCTGTCACAACCCTCTG--TCCGGTCCG-ATGCTTAGACTGGGAATG
* * * * * *
15463096 AACTCTGTACGTCTAAGTCAACCCTCGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCGA
581 AACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGG
* * * * * * * * * *
15463161 GATGCGTAAGTCGGGGATTGACCGAGTCCCCCTCTGCGTGCTGTCGATCCAGCTGCCGTAAACCT
646 GATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGTAACCCT
** * * ** * * *
15463226 CCTTTCAGTCTGATCTTAGACTGGGAATGAACTCCGTATACCTAATCCAACCGATGAAACGA---
711 CAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCG
*
15463288 -GCG-GA-CGGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
776 GGCGCGAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
*
15463350 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGC
841 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
*
15463386 ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
1 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * *
15463451 TCATGGCAAGACTACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTTGGGATTTT
66 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTT
* *
15463516 TTAAAATTTTTTCGGAAGGAGTTTTGGCTCCAAACATT-GTAGCCGTGATCCTTGTATTTTTGTT
131 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAAC-TTGGTAGACGTGATCCTTGTATTTTTGTT
* * * * *
15463580 GGCGTGCATAAAAAAATTCATCTAAAAACTCAAAGTGTACAAGATTTTATGACCATTTGAAAAAA
195 GGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
15463645 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAATCTGTAAAATCTCAAATGCTCTTT
260 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTT
* *
15463710 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAATACTAGC
325 AAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGC
* * * * * *
15463775 ACGCATTGCCCATCATGTGCGCACACCCCCCCGGCCCCCCCGATCATCGTAACCCCAATGCCGTC
390 ACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCC
** * * *
15463840 GGTCAGGTTCTCCGACGATGCTCCGGTGACGGTGCCCCGATTAAGAAAAATACGGCAGCAACACA
454 GGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACA
** * *
15463905 TGCTGGAGCCCAGCATGTGCTATCGCAACCCTCTGTCCGGTCCGAT-CTTAGACTGGGAATGAAC
519 TGCCCGAGCCCAGCATGTGCTGTCACAACCCTCTGTCCGGTCCGATGCTTAGACTGGGAATGAAC
* * * *
15463969 TCTGTATGCCTAATTCAACCTACGAAACGAGCGTGCGGGTGCTC-GATCGGCCAGAGGGGCGGGA
584 TCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAG-CCGGCCAGAGGGGCGGGA
* ** * * * *
15464033 TGCGTAAGCCGGGGATCGGTCGGGTCCCCCTCTACGTGCTACCGATCCTGTTGCTGCAACCCTCA
648 TGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGTAACCCTCA
*** * * *
15464098 GTCCGGTTTGATCTTAGACTAGGAATGAACTCCGTATGCCTAATCCAACTGACGAAACGAGCGGG
713 GTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGG
* *
15464163 CAAGCGAGCGGGCGGGCACTACATCGGCCAGAGAGATGGGATGCGCAAGCCGTGGATCGATAGGG
778 C--GCGAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGG
* *
15464228 TGGTAGGTGGGTTTAGGCACATCTTCATATTTGTAT
841 TGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
*
15464264 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACATGAAGTT
1 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* *
15464329 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCAAAACCTTTTACGGTTCGGGATTTT
66 TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTT
* * * *
15464394 TTAAAATTTTTTTGGAAGGATTTTTGGTCCCAAACTTGGTAGACATGATCCTTGTATTTTTGTTG
131 TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
* * *
15464459 GCGTGCA-AAAAAACATTCAGCCAAAAACTCAAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
196 GCATGCACAAAAAA-ATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAA
*
15464523 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTATAAAATCTCAAAATGCTCTT
260 GTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC-AAATGCTCTT
* * *
15464588 TAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGGGGTAGGGGGCCAATATAAGGGCCAAGTTCCCA
324 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAG-TACCA
* *
15464653 -CACCCATCACACATCATGTGCGCACACCCCCCGGCCGCCCCGATCGTCG-AACCCCAATGCCGC
388 GCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGC
* * ** * * *
15464716 CGATCAGGTTCACCGGTGATGCTCCGGCGATGGTGCCCCGATGAAGAAAAATATGGCACCAGCAC
453 CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAACAC
15464781 ATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCGGTCCGGTCCAAACTTAGGCTGGCAATGAAC
518 ATGCCCGAGCCCAGCATGTGCTGTCACAACCCTC--T---GT-----C-----C--G----G---
* * * * *
15464846 TCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAATGAGCGTGCGGG
559 TCC-GATGCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGG
* * * * * *
15464911 CGCTCAGCCGGCCAGAGGGGTGGGACGTGCAAGTCGGGGATCGATCGGGTCCACCTCTACGTGCT
623 CGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCT
* * *
15464976 GCCGATCCTGCTACTGAAACCCTCAGTCTGGTCCAATCTTAGACTAGGAATGAACTCCGTATGCC
688 GCCGATCCTGCTACTGTAACCCTCAGTCCGGTCCAATCTTAGACTAGGAATGAACTCCGTATACC
* * * ** * *
15465041 TAAGCCAACCAACGAAACGAGCGGGCGGGTAGGCAGGCGGGCACTATGCTGGCCAGAGAGACGAG
753 TAAGCCAACCGACGAAACGAGCGGGCGCG-A-GCGGGCGGGCACTACACCGGCCAGAGAGACGGG
* * * **
15465106 ATGCGCAAGCTGTGGATCCATAGGTTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGT
816 ATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAC
15465167 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
1 GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
* * * * *
15465232 TCATGGC-AGACGACTCGTTTTCTATTTTTCAATGATTTT-GAAACTTTTTTCAGTTCGAGATAT
66 TCATGGCAAGACGACTCGTTTTCTATTTTTC-ACGATTTTCGAAACTTTTTACGGTTCGGGATTT
*
15465295 TTTAAAATTTTTTCGGAAGGAGTTTTGG-CCCAAACTTAGTAGACGTGAATCCTTGTATTTTTGT
130 TTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTG-ATCCTTGTATTTTTGT
*
15465359 TGGAATGCACAAAAAAA-TCAGCT-AAAACTCGAAGTGTAC-AGATTTTGTGACCATTTGAAAAA
194 TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAA
* *
15465421 AGTATCCCCATTCCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
259 AGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTT
* ***
15465486 TAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGATGAATATAAGGGCCAAGTACCAG
324 TAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAG
* *
15465551 CACCCATCGCACATCGTGTGCACACACCCCCCGGCCCCCCCCGATCGTCGAAACCCCAATGCCGC
389 CACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCCCGATCGTCGAAACCCCAATGCCGC
* * * * *
15465616 CGGTCAGGTTCTCCGATGATGCTCCGACGATGGTG-CCCGGTGAAGAAAAATATGACACCAGCAC
453 CGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAACAC
* * * * *
15465680 ATGCCCGAGCCCAGCATGTGCTGCCACAACCCTCGGTCTGGTCCAAT-CTTAGACTGGCAATGAA
518 ATGCCCGAGCCCAGCATGTGCTGTCACAACCCTCTGTCCGGTCCGATGCTTAGACTGGGAATGAA
*
15465744 CTTTGTATGC
583 CTCTGTATGC
15465754 TTAGACTGGA
Statistics
Matches: 2825, Mismatches: 328, Indels: 179
0.85 0.10 0.05
Matches are distributed among these distances:
859 60 0.02
860 165 0.06
861 242 0.09
862 9 0.00
863 77 0.03
864 4 0.00
865 1 0.00
867 163 0.06
868 6 0.00
869 9 0.00
870 178 0.06
871 3 0.00
872 4 0.00
873 24 0.01
874 7 0.00
875 3 0.00
876 1 0.00
877 108 0.04
878 394 0.14
879 89 0.03
880 3 0.00
882 3 0.00
884 1 0.00
886 1 0.00
887 1 0.00
889 3 0.00
891 1 0.00
892 3 0.00
893 1 0.00
894 10 0.00
895 5 0.00
897 4 0.00
898 96 0.03
899 153 0.05
900 134 0.05
901 274 0.10
902 232 0.08
903 352 0.12
904 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (876 bp):
GTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTT
TCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCGAAACTTTTTACGGTTCGGGATTTT
TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTG
GCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAG
TGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTA
AGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCA
CCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGTCGAAACCCCAATGCCGCCGG
TCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGATGAAGAAAAATACGGCACCAACACATG
CCCGAGCCCAGCATGTGCTGTCACAACCCTCTGTCCGGTCCGATGCTTAGACTGGGAATGAACTC
TGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGC
GCAAGCCGGGGATCGACCGGGTCCCCCTCTACGTGCTGCCGATCCTGCTACTGTAACCCTCAGTC
CGGTCCAATCTTAGACTAGGAATGAACTCCGTATACCTAAGCCAACCGACGAAACGAGCGGGCGC
GAGCGGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTAC
Found at i:15464857 original size:26 final size:26
Alignment explanation
Indices: 15464828--15464880 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15464818 CCGGTCCAAA
*
15464828 CTTAGGCTGGCAATGAACTCCATATG
1 CTTAGACTGGCAATGAACTCCATATG
* *
15464854 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGCAATGAACTCCATATG
15464880 C
1 C
15464881 CTAACTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGCAATGAACTCCATATG
Found at i:15465777 original size:26 final size:26
Alignment explanation
Indices: 15465727--15465779 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15465717 CTGGTCCAAT
* **
15465727 CTTAGACTGGCAATGAACTTTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
15465753 CTTAGACTGGAAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
15465779 C
1 C
15465780 CTAAGCCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:15467514 original size:877 final size:876
Alignment explanation
Indices: 15465753--15469708 Score: 4522
Period size: 877 Copynumber: 4.5 Consensus size: 876
15465743 ACTTTGTATG
* * * *
15465753 CTTAGACTGGAAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGTGGGTGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGC-GG
* * * *
15465818 CAGACGGGCACTACGCCGCCCAAAGAGACGGGATGCGCAAGTCGTGGATCAATAGGGTGGTAGGT
65 --G-CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * * * * *
15465883 GGGTTTAGGCATATCTTCATATTTCTGCGTGCCAATTCCTTTTTTATGGCATGTAAATTCAAACA
127 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
15465948 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATT
192 ATGGT-CCTTAAGCCATCACGTGAAG-TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* * *
15466013 TTTGAAGCTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCAGAATGG-GTTTTGGCCCCAAACT
255 TTTGAAACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAA-GGAGTTTTGGCCCCAAACT
* * *
15466077 TGGTAGACGTGATCCTTGTA-TTTTGTTGGTATTCATAAAAAAATTCAGCTAAAAACTCGAAGTG
319 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
15466141 TACAAGATTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
384 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
*
15466206 CAAACCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
449 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* * * * *
15466271 GGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCTTGTGTGCACACCCCCTCTGG-G
514 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCC-CCGGCC
* * **
15466335 CCCCCGATCGTC-GGAACTCCAATGCCGCCGGTCAGGTTCTCCGGCGATGCTCCCACGATGGTGC
578 CCCCCGATC-TCTGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGC
* * * * * * *
15466399 CCCGATGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATGTGCTACCGCAACCCTCGG
642 CCCGACGAAGAAAAATATGGCACCAGCACATGCCCAAGCCAAGCATGTGCTGCCGCAACCCTTGG
* * * *
15466464 TCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAACCCACAAAACGAGCGTGC
707 TCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGC
* * * * * *
15466529 GGGCGCTCAGTCGGCCAGAGGGGTGGGCTGCGCAAGCCGAGGATCGATCGTGTCCCCCTCTGCGT
772 GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGT
* * * * **
15466594 GCTGTCAATCCTGCTGCCGCAGCCCTCAGTTC-GATCCAAT
837 GCTGCCGATCCTGCTGCCACAACCCTC-GGCCGGATCCAAT
15466634 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGG
* *
15466699 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCATGCCGTGGATCGATAAGGTGGTAGGTGGGT
66 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
15466764 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
15466829 TCCCTTAAGCCGTCACGTGATGTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
196 T-CCTTAAGCCATCACGTGAAGTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
15466894 AACTTTTTACGGTTCGGGATTTTTTAAAA-CTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
260 AACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * ** *
15466958 ACGTGATCCTTGTATTTTTATTGGCATGCACAAAAAAATACAATTAAAAACTTGAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
15467023 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
* * * * **
15467088 TGTAAAATCTAAAATGCTCTTCAAGGGGGTGTGAGCTCTTGATTTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* *
15467153 AATATAAGGGCCAAGTACCAGCAGCCATCGCACATCATGTGCGCACACCCGCCCCGGCCCCTCCG
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CCCCGGCCCCCCCG
* * ** * * ** *
15467218 ATTTCTTGAACCCCAATGTCGCCGGTCAGGTTCTCCTACGATGCTCTGGCGATGGTTCCGTGGCG
584 ATCTCTGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACG
* * * *
15467283 AAGAAAAATGTGGCACCAGCACAAGCCCAAGCCAAGCATGTGCTGCCGTAACCCTTTGTCCGGTC
649 AAGAAAAATATGGCACCAGCACATGCCCAAGCCAAGCATGTGCTGCCGCAACCCTTGGTCCGGTC
* * * *
15467348 CGATCTTAGACTGGGAATGAACTTCGTATTCCTAAGTCAGCCCACGAAACGAGCGTGCGGGTGCT
714 CGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCT
* * * * ** * * *
15467413 CAACCGGCTAAAGGGGCAGGATGCGCAAGCCGGGGATCGGTCAGGTCCCGCTCTGCGTGCTACCG
779 CAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCG
* * *
15467478 ATCATGCTGCCACAACCCTCAGGCCAG-TCTAAT
844 ATCCTGCTGCCACAACCCTC-GGCCGGATCCAAT
* * * * * * *
15467511 CTTAGACTAGGAATAAACTCCCTATGCCTAAGCCAACCAACG-AA--A-CGAGCAGACGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGG
* * * *
15467572 TGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGTT
66 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * * *
15467637 TTAGGCACATCTTCATATTTCTGCATGCCAATACCATTTTTATGGCTTTTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
15467702 TAACTTAAG----C-C------TTCAT--------G--T-G------A-----AAC--TTTTTGA
196 T-CCTTAAGCCATCACGTGAAGTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
15467732 AACTTTTTGTGGTTCCGAAATTTTTT-AAATTTTTTTGGAAGGAGTTTTGGCCCCAAACTTGGTA
260 AACTTTTTGCGGTT-CGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * * *
15467796 GACATGATGCTTGTATTTTTGTTGGCATGCACAAAAAAATTCACCTAAAAAATCAAAGTGTACAA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* *
15467861 GATTTTGTGACCATTTGATAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACAGGCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * *
15467926 TTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGATTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
*
15467991 CAATATAAGGGCCATGTACCAGCACCCATCGCACATCATGTGCGCACACACCCCCCGGCCCCCCC
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCGGCCCCCCC
* ** * * * *
15468056 GATCGCCAGAAGCCTAATGTCGCCGGTCAGGTTCTCCGGCGTTGCTCCT-ATGATGGTGCCCCGA
583 GATCTCTGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCT-CTGACGATGGTGCCCCGA
* * *
15468120 CGAAGAAAAATGTGGCACCAGCACATGCCCATG-CACAGCATGTGCTGCCGTAACCCTCAGTCTG
647 CGAAGAAAAATATGGCACCAGCACATGCCCAAGCCA-AGCATGTGCTGCCGCAA-CC-C--T-TG
* *
15468184 GTTCGATCTTAGATTGGGAATGAACTCCGTATGCTTAAACTGGGAATGAAATCCGTATGCCTAAG
706 G-TC---C---------G---G---TCCG-AT-CTTAGACTGGGAATGAACTCCGTATGCCTAAG
* * * * * * *
15468249 TCAACCCATGAAACGAGCTTACGGGTGCTCAGTCGGCCAGAGGGGCGGGATGCACAAGCCAGGGA
750 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGA
** * * * * *
15468314 TCGACCGGGTCCCCCTCTGTATGCTGCC-ATTCTTGCTACCATAATCCTCGATCCGG-TCCAAT
815 TCGACCGGGTCCCCCTCTGCGTGCTGCCGA-TCCTGCTGCCACAACCCTCG-GCCGGATCCAAT
* *
15468376 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGAGGGTGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGG
* * * *
15468441 CGGGCACTACGCCGACTAGAGAGACAGGATGCGCAAGCCGTGGATCGATAGGGTGGTAAGTGCGT
66 CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
15468506 TTAGGCACATCTTCCTATGTCT-TGTG--AA-GCCATTTTTATGGCTTGTATAATTCATACAATG
131 TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTA-AATTCATACAAT-
* * * *
15468567 GGTCCTTAAG-CATTACGTGAAGTTCATGGC-AGACG-CTCGTTTTCTATTTGTTAACTATTTTC
194 GGTCCTTAAGCCATCACGTGAAGTTCATGGCAAGACGACTCGTTTTCTATTT-TTCACGATTTTT
* * * *
15468629 AAAACTTTTTTGGGCGGTTC-AGATTTTATTAAAATTTTTTCGGAATGAGTTTTTGCCGCAAACT
258 GAAAC-TTTTT--GCGGTTCGAGATTTT-TTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
* * ** *
15468693 T-GTAGACATGATCC-TGTATTTTTG-TGGCATG--CTAAAAACGTCAGGTAAAAACT--AAGTG
319 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
*
15468751 TACAATATTTTGTGACCATTTGAAAAAAGTGTCCCTCCATTTCAGACACTTTTAATGGCTACTGG
384 TACAAGATTTTGTGACCATTTGAAAAAAGTGT-CC-CCATTTCAGACAC-TTTAATGGCTACTGG
* *
15468816 CAGC-AACGCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGGGTTCTTGAGGTTTGATGAGGG
446 CAGCAAAC-CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGG
* * *
15468880 AAAGGGGGCGCAATATATA-GGCCAAGTACCAGCACCCAT--AACATCATGGGCG-ACA---CCC
510 ATAGGGGGC-CAATATA-AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * * * * *
15468938 CTGCCCCCCCGATCACTCGGGA-CCCAATGTCGTCGAT-AGAG-T-T-------T--TCAGACGA
573 CGGCCCCCCCGATCTCT-GGAACCCCAATGTCGCCGGTCAG-GTTCTCCGGCGATGCTCTGACGA
* * *
15468990 TGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGTATGTGCTGCCGCAAC
636 TGGTGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCAAGCCAAGCATGTGCTGCCGCAAC
* * ** *
15469055 CCTTGGTCCGGTCTGATCTTAGACTGGGAATGCACTTTGTATGCCTAAGTCAACCCATGAAACGA
701 CCTTGGTCCGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
* *
15469120 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGTATGCGCAAGCCGGGGATCGACCGGGTCCACCT
766 GCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCT
* *
15469185 CTGCGTGCTGCCGATCCTGCTGCCCCAACCCTCGGTCCGGA-CCTAT
831 CTGCGTGCTGCCGATCCTGCTGCCACAACCCTCGG-CCGGATCCAAT
* * * * **
15469231 CTTAGATTGGGAATGAACTCTGTATGCCTAAGGCAACCGACGAAACGAGTAGGCGGCGGCGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGC-G-GGCGGGCG
* * * *
15469296 GG-GGGCGCTACGGTCGGCCAGAGAAGCCGGGATGCG-AA-CCGTGGATCGATAGGGTGGTAGGT
64 GGCGGGCACTAC-GCCGACCAGAG-AGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* * *
15469358 GGGTTTAGACACATCTTCATATTTCTAAGTGACAATGCCATTTTTATGGCTTGTAAATTCATACA
127 GGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
15469423 ATGGTCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
192 ATGGTCCTTAAGCCATCACGTGAAG-TTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTT
* * * *
15469488 TTGAAACTTTTTTGTGGTTCGAGATTTTTTAAAATTTTTTTGGAAGGTGTTTTTTGG-CACAAAC
256 TTGAAAC-TTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAG--TTTTGGCCCCAAAC
15469552 TTGGTAGA-GTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAATTCAGCTAAAAACTCGAAGT
318 TTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
* ** ** *
15469615 GTACAAAATTTTGTGAGGATTTGAAAAAAGTGTCTGCATTTCAGACACTTTAATTGCTA-TGGCA
383 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
*
15469679 G-AAACCTGTAAAATCTCACATGCTCTTTAA
448 GCAAACCTGTAAAATCTCAAATGCTCTTTAA
15469709 NNNNNNNNNN
Statistics
Matches: 2629, Mismatches: 327, Indels: 259
0.82 0.10 0.08
Matches are distributed among these distances:
838 24 0.01
839 370 0.14
840 8 0.00
841 1 0.00
843 1 0.00
844 2 0.00
845 3 0.00
848 1 0.00
851 1 0.00
852 1 0.00
854 1 0.00
855 181 0.07
856 57 0.02
857 25 0.01
858 20 0.01
859 49 0.02
860 74 0.03
861 53 0.02
862 36 0.01
863 34 0.01
864 6 0.00
865 215 0.08
866 22 0.01
867 3 0.00
868 4 0.00
869 89 0.03
870 1 0.00
872 1 0.00
873 140 0.05
874 3 0.00
875 46 0.02
876 294 0.11
877 419 0.16
878 2 0.00
879 1 0.00
880 5 0.00
881 118 0.04
882 1 0.00
883 2 0.00
884 1 0.00
885 1 0.00
890 1 0.00
891 4 0.00
892 30 0.01
893 2 0.00
895 35 0.01
896 5 0.00
897 46 0.02
898 77 0.03
899 41 0.02
900 22 0.01
901 15 0.01
902 35 0.01
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.26
Consensus pattern (876 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAATGAGCGGGCGGGCGGGCGGG
CGGGCACTACGCCGACCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCTTAAGCCATCACGTGAAGTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTGCGGTTCGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCCCGAT
CTCTGGAACCCCAATGTCGCCGGTCAGGTTCTCCGGCGATGCTCTGACGATGGTGCCCCGACGAA
GAAAAATATGGCACCAGCACATGCCCAAGCCAAGCATGTGCTGCCGCAACCCTTGGTCCGGTCCG
ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCA
GCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGAT
CCTGCTGCCACAACCCTCGGCCGGATCCAAT
Found at i:15472688 original size:6 final size:6
Alignment explanation
Indices: 15472665--15472737 Score: 53
Period size: 6 Copynumber: 12.3 Consensus size: 6
15472655 AAAACAGAAT
* * * *
15472665 AATAAA AAAAATA AATAAA AATAAA AA-AATA AAGAAA AGT-AA AACAAA
1 AATAAA AATAA-A AATAAA AATAAA AATAA-A AATAAA AATAAA AATAAA
* *
15472713 AATGAA AAT-AA AATAAA GATAAA AA
1 AATAAA AATAAA AATAAA AATAAA AA
15472738 GAATATTAAA
Statistics
Matches: 52, Mismatches: 10, Indels: 10
0.72 0.14 0.14
Matches are distributed among these distances:
5 10 0.19
6 35 0.67
7 7 0.13
ACGTcount: A:0.79, C:0.01, G:0.05, T:0.14
Consensus pattern (6 bp):
AATAAA
Found at i:15472693 original size:22 final size:22
Alignment explanation
Indices: 15472662--15472808 Score: 64
Period size: 22 Copynumber: 6.5 Consensus size: 22
15472652 AAGAAAACAG
*
15472662 AATAATAAAAAAAATAAATAAA
1 AATAAAAAAAAAAATAAATAAA
15472684 AATAAAAAAATAAAGA-AAAGT-AA
1 AATAAAAAAA-AAA-ATAAA-TAAA
* **
15472707 AACAAAAATGAAAATAAAATAAA
1 AATAAAAAAAAAAAT-AAATAAA
* * * *
15472730 GATAAAAAGAATATTAAATAAA
1 AATAAAAAAAAAAATAAATAAA
** *** *
15472752 CCTAATCTAATAAATAAATAAATA
1 AATAAAAAAAAAAATAAAT-AA-A
* * * *
15472776 AATAAATAAACAAAGAAATGAA
1 AATAAAAAAAAAAATAAATAAA
15472798 AATAAAAAAAA
1 AATAAAAAAAA
15472809 GAAAAAAAAA
Statistics
Matches: 88, Mismatches: 29, Indels: 16
0.66 0.22 0.12
Matches are distributed among these distances:
21 1 0.01
22 40 0.45
23 32 0.36
24 15 0.17
ACGTcount: A:0.74, C:0.03, G:0.05, T:0.18
Consensus pattern (22 bp):
AATAAAAAAAAAAATAAATAAA
Found at i:15472702 original size:11 final size:10
Alignment explanation
Indices: 15472668--15472729 Score: 56
Period size: 10 Copynumber: 6.2 Consensus size: 10
15472658 ACAGAATAAT
15472668 AAAAAAAATA
1 AAAAAAAATA
*
15472678 AATAAAAAT-
1 AAAAAAAATA
15472687 -AAAAAAATA
1 AAAAAAAATA
* *
15472696 AAGAAAAGTA
1 AAAAAAAATA
15472706 AAACAAAAATGA
1 AAA-AAAAAT-A
*
15472718 AAATAAAATA
1 AAAAAAAATA
15472728 AA
1 AA
15472730 GATAAAAAGA
Statistics
Matches: 41, Mismatches: 7, Indels: 8
0.73 0.12 0.14
Matches are distributed among these distances:
8 7 0.17
10 20 0.49
11 10 0.24
12 4 0.10
ACGTcount: A:0.81, C:0.02, G:0.05, T:0.13
Consensus pattern (10 bp):
AAAAAAAATA
Found at i:15472767 original size:4 final size:4
Alignment explanation
Indices: 15472760--15472785 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
15472750 AACCTAATCT
15472760 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
15472786 CAAAGAAATG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:15473174 original size:20 final size:20
Alignment explanation
Indices: 15473149--15473188 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
15473139 TTCACCAGAT
15473149 TCTGGGTTTTGTCGTCGGAA
1 TCTGGGTTTTGTCGTCGGAA
*
15473169 TCTGGGTTTTTTCGTCGGAA
1 TCTGGGTTTTGTCGTCGGAA
15473189 GTTCACCGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.10, C:0.15, G:0.33, T:0.42
Consensus pattern (20 bp):
TCTGGGTTTTGTCGTCGGAA
Found at i:15473827 original size:27 final size:27
Alignment explanation
Indices: 15473771--15473848 Score: 79
Period size: 27 Copynumber: 2.9 Consensus size: 27
15473761 ATACAATAAG
* * * *
15473771 ATAAATAAAAAAATA-TTACAAAAAAAA
1 ATAAATAATAAAATACATA-AAATAATA
*
15473798 ATAAATAA-AAATATACATATAATAATA
1 ATAAATAATAAA-ATACATAAAATAATA
15473825 ATAAATAATAAAATACATAAAATA
1 ATAAATAATAAAATACATAAAATA
15473849 CAAAAGAAAA
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
26 3 0.07
27 35 0.81
28 5 0.12
ACGTcount: A:0.72, C:0.04, G:0.00, T:0.24
Consensus pattern (27 bp):
ATAAATAATAAAATACATAAAATAATA
Found at i:15474433 original size:26 final size:26
Alignment explanation
Indices: 15474397--15474449 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15474387 CTGATCTGAT
*
15474397 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCCTATG
15474423 CTTAGACTGGGAATGAACTCCCTATG
1 CTTAGACTGGGAATGAACTCCCTATG
15474449 C
1 C
15474450 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCCTATG
Found at i:15476942 original size:26 final size:26
Alignment explanation
Indices: 15476905--15476957 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15476895 CTGATCCGAT
15476905 CTTAGATCGGGAATGAACTCCATATG
1 CTTAGATCGGGAATGAACTCCATATG
*
15476931 CTTAGA-CTGGGAATGAACTCCGTATG
1 CTTAGATC-GGGAATGAACTCCATATG
15476957 C
1 C
15476958 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCCATATG
Found at i:15477202 original size:892 final size:892
Alignment explanation
Indices: 15474423--15477871 Score: 4603
Period size: 892 Copynumber: 3.9 Consensus size: 892
15474413 ACTCCGTATG
* * * *
15474423 CTTAGACTGGGAATGAACTCCCTATGCCTAAGCCAACCGACGAAACGAACGGGCGGAC-GGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGGGCGGGCGGGCGGG
* * *
15474487 CGGGCACCACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGT-GTAGGT-GGT
66 CGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * *
15474550 TTAGGCACATCTTCATATTTCTGCATGTCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGG
* * * * * **
15474615 TCTCTTAAACCTTCACGTGAAGTTTCATGGCAAGACGACCCGTTTTCTGTTTTTCATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * * * * * *
15474680 AAACTTTTTGCTGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGTCCCAACCTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* *
15474745 GACGTGATCCTTGTATTTTTTTTGGCATGCATAAGAAA-ATTCAGCTAAAAACTCAAAGTGTACA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAA-AAACATTCAGCTAAAAACTCAAAGTGTACA
15474809 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
390 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* * * *
15474874 CCTGTAAAATCTCAAATGCTTTTTAAGGGGGTCTAAGTTCTCGAGGTTTGATGAGGGATAAGGGG
455 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * *
15474939 CCAATATAAGAGCCAAGTACCAGCACCCATCGCACATCGTGTGTGCACACCCCC-CGGCCCCCCC
520 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCACCCCC
* * *
15475003 GATCGTCGGAACCCCAATGCCGTCGGTCAAGTTCTCCGGTGATGCTCAAATGATGGTGCCCCAAC
585 GATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCC-G-GA----C----GATGGTGCCCCGAC
* * ***
15475068 GAAGAAAAATGCGGCACCAGCACATGCCTGAGCCCAGCAGGTGCTGCCATAACCCTCGGT-T-A-
640 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGAT
* *
15475130 --GGTC-----C------G-A-T-C--A----TAGACTGGGAATGAACTCTGTATGCCTAAGTCA
705 CCGATCTTAGACGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
* * ***
15475173 ACCCACGAAACGAGCGAGCGGGTGCAT-AGCCGGCTGGAGGGGCGGGATGCGCAAGCCGGGGATC
770 ACCCACGAAACGAGCGTGCGGGCGC-TCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * **
15475237 G-GCTGGGTCACCCTCTGCGTGGTGTCGATCCTGCTGCC-GCAACCCTCGGTCCGGTCTGAT
834 GATC-GGGTC-CCCTCTGCGTGCTGCCGATCCTGCT-CCTGCAACCCTCGGTTCGGTCCAAT
* * * * * * * **
15475297 CTTAGACTGAGAATGAACTCTGTATGCCTAATCCAACCGACGAAACAAGCGGACGGGTGGAAGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * * *
15475362 CGGGTACTACGCTGGCCA-AGAGATGAGATGTGCAAGCCATGGATCAATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *** *
15475426 TTAGGCACATCTTCATATTTATGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGG
* * **
15475491 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAATATGACTCGTTTTCTATTTTTCACGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* *
15475556 AAACTTTCTT-CGGTTCGGGATTTTCTAAAATTTTTTC-AGATGGAGTTTTGGCCCCAAACTTGG
261 AAACTTT-TTACGGTTCGGGATTTTTTAAAATTTTTTCGA-AAGGAGTTTTGGCCCCAAACTTGG
* ** * * * * * *
15475619 TAGTCACGATCCTTGTATTTTTTTTGGCGTACACAAAAAAATTCAGCTAAAAACTCGAAGTGTCC
324 TAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTAC
* *
15475684 AAGATTTTGTGACCATTTG-AAAAAGTGTCCCCATTTTAGACACTTTAATGGCTACTGACAGCAA
389 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
*
15475748 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGATTTGATGAGGGATAGGGG
454 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* *
15475813 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGGCACCCC
519 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCACCCC
**
15475878 CGATTGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
584 CGATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--C---G----GACGATGGTGCCCCGA
* * * *
15475943 CGAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCTTGTGCTGTTGCAACCCTCGGTCTGA
639 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGA
* *
15476008 TCCGATATTAGATCGGGAATGAACTCCATATGCTTAGACTAGGAATGAACTCC-TATGCCTAAGT
704 TCCGATCTTAGA-CGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGT
* * *
15476072 CAACCCACGAAACGAGCGTACGGGCGTTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCAGGGAT
768 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGAT
* * * **
15476137 CGATCGGGTCCCCCTCTGCGTGCTTCCGATCTTGCTGCTGCAACCCTC-AATCTGGTCCAAT
833 CGATCGGGT-CCCCTCTGCGTGCTGCCGATCCTGCTCCTGCAACCCTCGGTTC-GGTCCAAT
* *
15476198 CTTAGACTTGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGGGCGGGTGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGGGCGGGCGGGCGGG
* * *
15476263 CGGGCACTACGCCGGCCAGAGAGACGAGATGCGTAAGCTGTGGATCGATAGGGTGGCAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
15476328 TTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGG
* *
15476393 TCCCTTAAGCCTTCACGTGAAGTTTTATGGCAAGACAACTCGTTTTCTATTTTTCACGATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
15476458 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
15476523 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACCCGAAGTGTATAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAA
* * *
15476588 GATTTTGTGACCATTTGAAAAAAGCGTCCCCATTTCAGACACATTAATGGCTACTGGTAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
15476653 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
15476718 CAATATAAGGGCCAAGTACCAGCACCTATCGTACATCATGTGCGCACACCCCCTCGGCACCCACG
521 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCACCCCCG
* * * ** *
15476783 ATCATGGGATCCCCAATGCCGTCAGTCAGGTTCTCC-GACGATGGTGCCCCGGTGAAGACAAATG
586 ATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGACGATGGTGCCCCGACGAAGAAAAATG
* *
15476847 CGGCACCAGCACATGCCCAAGCCTAGCATGTGCTGCTGCAACCCTC-GTCTGATCCGATCTTAGA
651 CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGATCCGATCTTAGA
*
15476911 TCGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAA
716 -CGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAA
15476976 CGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCT
780 CGAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCC-
* * *
15477041 CCTTTGCGTGCTGCCGATCCTACTCCTGCAACCCTCGGTTCAGTCCAAT
844 CCTCTGCGTGCTGCCGATCCTGCTCCTGCAACCCTCGGTTCGGTCCAAT
* *
15477090 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAAACGACGAAACGAGCGGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGGGCGGGCGGGCGGG
* * * * *
15477155 TGGGCACTACGTCGGCCAGAAAGACGTGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
*
15477220 TTAGGCACATCTTCATATTTCCCCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGG
15477285 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * * **
15477350 AAACTTTTTACGGTTCGGGATTTTTTAAAATTATTTCGGAAGGAGCTTTCTCCCCAAACTTGGTA
261 AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
*
15477415 GACGTGATCCTTCTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAA
326 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAA
* *
15477480 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTCAATGGCTACTGGTAGCAAAC
391 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
15477545 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGAGAGTTCTCAAGGTTTGATGAGGGATAGGGGGC
456 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
15477610 CAATATAAAGGCCAGGTACCAGCA-CCATTCGCACATCATGTGCGCACA-CCCCTCCG-ACCCCC
521 CAATATAAGGGCCAAGTACCAGCACCCA-TCGCACATCATGTGCGCACACCCCCTCGGCA-CCCC
* * * *
15477672 CGGATCACCGAAACACCAATGCCGTCGGTCAGGTTCTCCGGCGCTGCTCCTACGTTGGTGCCCCG
584 C-GATCATCGGAACCCCAATGCCGTCGGTCAGGTTCT-C--CG--G-----ACGATGGTGCCCCG
* * * *
15477737 ACAAAGAAAAATGCGGCACCAGAACATGCCTGAGCCCAGCATGTGGTGCTGCAACCCTCGGT-TC
638 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCT-
* * *
15477801 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
702 GATCCGATCTTAGAC-GGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAA
*
15477866 GCCAAC
766 GTCAAC
15477872 TGACCAAACG
Statistics
Matches: 2274, Mismatches: 231, Indels: 110
0.87 0.09 0.04
Matches are distributed among these distances:
874 78 0.03
875 182 0.08
876 351 0.15
877 4 0.00
878 1 0.00
879 1 0.00
880 1 0.00
881 3 0.00
884 2 0.00
887 1 0.00
890 1 0.00
891 72 0.03
892 746 0.33
893 4 0.00
894 1 0.00
895 2 0.00
896 1 0.00
898 2 0.00
900 4 0.00
901 182 0.08
902 308 0.14
903 260 0.11
904 67 0.03
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.26
Consensus pattern (892 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAAACGACGAAACGAGCGGGCGGGCGGGCGGG
CGGGCACTACGCCGGCCAGAGAGACGAGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTCTCCATGCCAATGCCATTTTAATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
AAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGTA
GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAACATTCAGCTAAAAACTCAAAGTGTACAA
GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCTCGGCACCCCCG
ATCATCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGACGATGGTGCCCCGACGAAGAAAAATG
CGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTCGGTCTGATCCGATCTTAGA
CGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAAC
GAGCGTGCGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCCGGGGATCGATCGGGTCCCC
TCTGCGTGCTGCCGATCCTGCTCCTGCAACCCTCGGTTCGGTCCAAT
Found at i:15477845 original size:26 final size:26
Alignment explanation
Indices: 15477809--15477861 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15477799 TCGGTCTGAT
15477809 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15477835 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15477861 C
1 C
15477862 CTAAGCCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15478582 original size:26 final size:26
Alignment explanation
Indices: 15478545--15478597 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15478535 CTGATCTGAT
15478545 CTTAGATCGGGAATGAACTCCATATG
1 CTTAGATCGGGAATGAACTCCATATG
*
15478571 CTTAGA-CTGGGAATGAACTCCGTATG
1 CTTAGATC-GGGAATGAACTCCATATG
15478597 C
1 C
15478598 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
25 1 0.04
26 24 0.96
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGATCGGGAATGAACTCCATATG
Found at i:15480357 original size:26 final size:26
Alignment explanation
Indices: 15480321--15480373 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15480311 CCAGTTCAAT
*
15480321 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15480347 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15480373 C
1 C
15480374 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15482802 original size:902 final size:901
Alignment explanation
Indices: 15477835--15490775 Score: 17093
Period size: 904 Copynumber: 14.5 Consensus size: 901
15477825 ACTCCGTATG
* * *
15477835 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGAC-CAA--A-CGGGCGGGC--AGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCG
* * *
15477894 GGCACTACGTCGGCCAGAGAGACGGGATGCACAAACCGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
15477959 AGGCCCATCTTCATATTTCT-CTGTGCCAATGCCATTTTTATGGCTAGTAAATTCATACAATGGC
131 AGGCACATCTTCATATTTCTGC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* *
15478023 CCCTTAAGCCATCACGTGAAGTTTCATGGCAAGACGACTCGTTTCCTATTTTTCACGATTTTTGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * * * * *
15478088 AACTTTTTGTGCTTC-GATATTTTTTAAAATTTTTTTGGAAGGTGTTGTGGCCCCAAACTTGGTA
260 AACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * *
15478152 GACGTGATCCTTGTATTTTTGTTGGCGTACACAAAAAAATTCAGCTAAAAACTCGAAGTGTCCAA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
15478217 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAGACACTTTAATAGCTACTGCCAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
15478282 CTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* *
15478347 CAATATAAGGACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCACCCCCGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* *
15478412 TCGTCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGA
584 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
** * * *
15478477 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTAATGCTGCAACCCTCGGTCTGATCT
649 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
* *
15478542 GATCTTAGA-TCGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCA
714 GATCTTAGACT-GGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCA
* * * * *
15478606 ACCCACAAAACGAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGCGGGATGCACAAGTCGGGGATCG
778 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * *
15478671 ATCGGGTCCCCCTCTGCGTGCTGTCGATCCGGCTACCGCAACCCTCAGT-TCGGTCCAAT
843 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCT-GGTCCGAT
* * * **
15478730 CTTGGACTTGGAATGAACTCCGTATGACTAAGCCAAATGACGAAACGAGCGGGCGGGC--GGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCG
* * *
15478793 AGCACTACGCCGGCTAGAGAGACGGGATGCGCAAGCTGTGGATCGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * * *
15478858 AGGCACATGTTCA-ATTTCT-CTGTGCCAATGCCATTTTAATGGCTTGTGAATTCATACAATGGT
131 AGGCACATCTTCATATTTCTGC-ATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
15478921 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGA-TTTTCA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
15478985 AAC-TTTTGCGGTTCATGATTTTTTAAAATTTTTT-GAAAGGAGTTTTGGTCCCAAACTTGGTAG
260 AACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* *
15479048 ACGT-AT-CTTGTATTTTT-TTGGCGTGCATAAAAAAATTCAGCTAAAAAACTCGAAGTGTACAA
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCT-AAAAACTCGAAGTGTACAA
* * *
15479110 GA-TTTGTGACCATTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGC-AATGGTAGCAAA-
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* * * *
15479172 CTGT-AAATCTCAAATGCTCTTTAA-GAGGTATGAGTTCTCAAGGTTTGATGAGGGATAGGGGCC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
15479235 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA---------CCCCCCGA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGA
* * * * ** *
15479291 TCGCCAGAACCCCAATGCCTCCAGTCAGGTTCTCCGGTGATGCTCCGACGATGGTGCCCGGACGA
584 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * * * *
15479356 AGAAAAATGCGACACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCTGATCC
649 AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT
* ** * *
15479421 GATCTTTGACTGGGAATGAACTTTGTATGCTTAGACTGGGAATGAACTCCATATGCCTAAGTCAA
714 GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAA
* * * *
15479486 CCCATGAAACGAGCGTACGGGCGCTCAGCCGGCCAAAGGGGCGGGATGCGCAAGCTGGGGATCGA
779 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * * * * *
15479551 CCGGGTCCCCCTCTGCATGCTACCGATGCTACTGCTGCAACACTCAGTCTGGTCTGAT
844 TCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
* * * *
15479609 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACCATCGGAC-GG-GTGGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCG
*** *
15479672 GGCACTACGCCGATGAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTAGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* ***
15479737 AGGCACATCTTCATATTTATGCCCACCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
15479802 CCTTAAGCCTTCATGTGCAGTTTCATGGCAAGACGACTCGTTTTCTGTTTTTCACGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
*
15479867 ACTTTTT-CGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCATACTTGGTAGA
261 ACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
*
15479931 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGA
326 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * * *
15479996 TTTTGTGACCATTTGAGAAAAGTGTCCCCATTTCAGACACTTTAATGGCAATTGGTAGCAAACCT
391 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
15480061 GTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
456 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
** *
15480126 ATATAAGCACCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGG-CCCCCGGATC
521 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
* *
15480190 GCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACAATGGTGCCCCGACGAAG
586 GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
* * * *
15480255 AAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGTAACCCTCGGTCCAGT-TCA
651 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCT-G
*
15480319 ATCTTAGACTGGGAATGAACTCTGTATGCTTAGA-TTGGGAATGAACTCCGTATGCCTAAGTCAA
715 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTT-GGAATGAACTCCGTATGCCTAAGTCAA
* * * * **
15480383 CCCACGAAACTAGCGTGCGGGTGCTCAGCCGGCCAGAAGGACGGGATGCGCAAAACGGGGATCGA
779 CCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* ** * * * * * * *
15480448 CCAAGTCCCCCT-TCACGTGCAGTCGATCCTGCTGTCACAACCCTCGGTCTGGTCTGAT
844 TCGGGTCCCCCTCT-GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
* * * * *
15480506 CTTAGACTAGGAATGGAGTTCGTATGCCTAACCCAACCGACGAAACGAGCGGGCGGGCAGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G--GGC-GG
* * *
15480571 CGGGCGGGCTCTACGCCGGCCAGAGAGACGGGATGTGCAAGCTGTGGATCGATAGGGTGGTAGGT
61 -GGGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
* *
15480636 GGGTTTAGACACATCTTCATATTTCTGCATGCGAATGCCATTTTTATGGCTTGTAAATTCATACA
125 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
* *
15480701 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACTCGTTTTCTATTTTTCATGATT
190 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* *
15480766 TTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAACCCT
255 TTTGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
* * * * *
15480831 GTTAGACATGATCCTTGTATTTTTTTTGGCGTGCACAAAAAAACTCAGCTAAAAACTCGAAGTGT
320 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGT
** * *
15480896 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATATCAATTGGCAGC
385 ACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGC
15480961 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
450 AAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGG
*
15481026 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGGGCGCACACCCCCCGGCCCCC
515 GGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCC
* * * * * *
15481091 CCGATCGTCGGAACCCCAATTCCACCCGTTAGGTTC-CACGGCGATGCTCCGACGATGGTGCCCT
580 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC-CGACGATGCTCCGACGATGGTGCCCC
* * *
15481155 GACGAAGAAAAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGTCGTAACCCTCGGT-C
644 GACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* *
15481219 GAGT-TCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGA-TTGGGAATGAACTCCGTTTGCC
709 G-GTCT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTT-GGAATGAACTCCGTATGCC
* * * ** **
15481282 TAAGTCAACCCACGAAACTAGCGTGCGGGTGCTCAGCCGGCCAGAAGGATGGGATGCGCAAAACG
771 TAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * * ** * * * * *
15481347 GGGATCGATCGAGTCCCCCT-TCACGTGCAGTTGATCCTACTGTCGTAACCCTCGGTCCGGTCCG
836 GGGATCGATCGGGTCCCCCTCT-GCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCG
15481411 AT
900 AT
* * * *
15481413 CTTAGACTAGGAATGAAGTTCGTATGCCTAACCCAACCGACGAAACGAGCGGGCGGGCGGACGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC--G-GG-CGGG
* * **
15481478 CAGGCGGGCTCTACGCCGGCCAGAGAGACGGGATGTGCAAGTTGTGGATCGATAGGGTGGTAGGT
62 --GGCGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGT
15481543 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
125 GGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACA
*
15481608 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACAATT
190 ATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATT
* ****
15481673 TTTGAAACTTTTTACGGTTC-GAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCATTGAACT
255 TTTGAAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACT
*
15481737 TGGTAGACGTGATCCTTGTATTTTTGTTGGCGTGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
319 TGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
** * *
15481802 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATATCAATTGGCAG
384 TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
* * *
15481867 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTTTCAAGGTTTGACGAGGGATAG
449 CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
* *
15481932 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGTCAC
514 GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
* * * * *
15481997 CCCGATCG-CTGGAACCCCAATGCTGTCGGTTAGGTTCTACGACGAT-CTCCGACGATCGTGCCC
579 CCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCC
* * * * *
15482060 CGACGAAGAAAAATGTGGCTCCAGCACATGTCTGAGCCCAGGATGTGCTGCCGCAACCCTCGGTC
643 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTC
* * *
15482125 TGGTCTGATCTTAGACTGGAAATGAACTCCGTATGCTTAGACTTGAAATGAACTCTC-TATGCCT
708 CGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTC-CGTATGCCT
* * * * * *
15482189 AACTCCACCCACGAAACAAGCGTCGGGGGCGCTCAGCCGGCCAGAGGGGCGAGATGCACAAGCCG
772 AAGTCAACCCACGAAACGAGCGT-GCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCG
* * *
15482254 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCACTCTGGTCCAA
836 GGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGA
15482319 T
901 T
* * * *
15482320 CTTAGAATGGGAATGAACTTCGTATGCCTAAGCCAACCGACAAAACGAGCGGGCGGGCGGGAGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG-GGC
* * *
15482385 GGGCACTATGCCGGCCAAAGAGACGGGATGCGCAAGCCGTAGATCGATAGGGTGGTAGGTGGGTT
65 GGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTT
* *
15482450 TAGGCACATCTTCATATTTGTGCATGCCAATTCCATTTTTATGGCTTGTAAATTCATACAATGGT
130 TAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGT
* * *
15482515 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTTGGA
195 CCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGA
* * *
15482580 AACATTTTGCGGTTCAGGATTTTTTAAAATTTTTTTGGAAGGGGTTTTGGCCCCAAACTTGGTAG
260 AACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * * *
15482645 ACGTAATCCTAGTATTTTTATTGGCATGCACAAAAAAATTCAGCTAGAAACTCGAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
15482710 ATTTTGTGACCATTTGAAAAAAGTATCCCCATTTCAGACACTTTAATAGCTACTGGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
15482775 TGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* * * * * * *
15482840 AATATAAGGGCCAAGTACCAGCAGCCACCACATATCATGTGCACACACCCCCCGACCCCCCTGAT
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGAT
* *
15482905 CGTCGAAACCCCAATGCCGCCGGTCAGG---T-------T-CTCCGACGATGGTGCCCTGACGAA
585 CGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAA
* * * * *
15482959 GAGAAAT---G----AGCACATGCCCGAGCCCAACATGTGTTGCCGCCACCCTCGATCCGGTCTG
650 GAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTG
* * *
15483017 ATCATAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCGTATACCTAAGTCAAC
715 ATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAAC
* * * * *
15483082 CCATGAAACGAGCGTGC-GGCGCTCAGTCGGCCAGAGGGGCGAGATGAGCAAGCCGGGGATCGAC
780 CCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGAT
* ** * * *
15483146 CGGGTCCCCCTCTACGTGCTATCGATCCTGCTACCGCAACCCTCGGTCTGGTCTGAT
845 CGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
* * * *
15483203 CTTAGATTGGGAATGAACTCCATATGCCTAAGCCAACCGACGAAACGAGCGGGCAGTCGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGG--GG
15483268 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
64 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15483333 TTAGGCACATCTTCATATTTTTGTATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
129 TTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * **
15483398 TCCCTTAAGCCTTCACATGAAGTTTCATGGCAAGACGACCCGTTTTCTATTTTTCACGATTTTCA
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
* * *
15483463 AAACCTTTTGTGGTT-TGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
259 AAACTTTTTGCGGTTCAG-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
15483527 AGACGTAATCCTTGTATTTTTGTTGGCTTGCA-AAAAAAATTCAGCTAAAATCTCGAAGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
15483591 AGATTTTGTGATCGTTCGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
15483656 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAAGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* *
15483721 CCAATATAAGGGCCAAGTACCGGCACCCATCGCACATCATGTGCGCACACCCCCCCGGCCCCCAC
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCC
* * * **
15483786 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCCCCGATGATGCTCCGGCGATGGTGCCCCGGT
582 GATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * * * * *
15483851 GAAGAAAAATACGGCACCAACACATTCTCGAGCCCAGCATGTGCTACTGCAACCCTCAGTCCGGT
647 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
15483916 CTGA---T---CT-----T--A----G---GC-T--A---GGAATGAACTCCGTATGCCTAAGTC
712 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTC
* *
15483955 AACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGAATC
777 AACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATC
* * * * * * **
15484020 -AGCTAGGTCCCCCTCTACGTGCTGCCGATCTTGCTGCCGTAATCCTC-GATCCAGTCCGAT
842 GATC-GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAG-TCTGGTCCGAT
* * *
15484080 CTTAGACTGGGAATGAACTCCGTATGCCTAGGCCAACCGTCGAAACGAGCGAGCGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGC-GG-GGG
*** * * * **
15484145 CGAGG-ACTAC-ATAGCGAGAGAGACGGGATGCGTAAGCCGTGAATAAATAGGGTGGTAGGTGGG
64 CG-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *** *
15484208 TTTGGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATCCAATG
128 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * * * * * *
15484273 ATCCCTTAAGCTTTCACATGAAGTTTCATGGCAAGACGATTGGATTTCTAGTTTTCACGATTTTT
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * * * *
15484338 GAAACTTTTTACGGTTCGGGATTTTTGAAAATTTTTTCGGACGGAG-TTTGGGCCCAAACTTGGT
258 GAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
15484402 AGACATTATCCTTGTATTCTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAGA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
15484467 AGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
15484532 CCTATAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
15484597 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGACCCCCCCG
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
* * * * *
15484662 ATCGT-GAGAACCCCAATACCGTCGGTCAGGTTCTCTGATGATGCTCCGACGATGGTGCCCCGAT
583 ATCGTCG-GAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * * * * ** * * **
15484726 GAAGAAAAGTGCGACAGCAGCACATG-CTGGGCGCAGCACATGCT--CG--AGCC-CAG-CATGT
647 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* ** * * * * *
15484784 GCTG-CCGCA-ACCCTCGG-TTCG--GTCC-AAT-CTTAGACTGGGAATGAACTCCGTATGCCTA
712 -CTGATCTTAGA--CTGGGAAT-GAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTA
* * * * *
15484842 AGTCAACACATGAAACGAGCGTGCGGGCGCTCAGCCAGCCAGAGGGTCGGGATGCGCAAGCCAGG
773 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGG
* ** * * * * ** *
15484907 GATCGACCGGGTCAACCTCTACATGCTGCTGATCCTGCTGCCTCAACCCTTGGTCTGGTCTGAT
838 GATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
* * *
15484971 CTTACACTGGGAATGAACTCCGTATGCCTAAACCAACTGACGAAACGAGCGGGCAGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC--G--GGCGGGC-GG
* *
15485036 CGGGCGGGCGAGCACTACGTCGGCCAGAGAGACGGGATGCGTAAGCCGTGGATCGATAGGGTGGT
61 -GGGC--G-G-GCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGT
* ** *
15485101 AGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGAAAATTCA
121 AGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
* *
15485166 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCAT
186 TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCAC
**
15485231 GATTTTCT-AAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAAGG-GTTTTGGCCCC
251 GATTTT-TGAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGG-AAGGAGTTTTGGCCCC
* * * *
15485294 AAACTTGGAAGACTTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTAAAAGCTCG
314 AAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
15485359 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
379 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
15485424 GGCAGCAAACCTATAAAATCTCAAATGCTTTTTATGGGGGTTTGAGTTCTCGAGGTTTGATGAGG
444 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
**
15485489 GATAGGGACCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCC
509 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCC
* * * *
15485554 GGCCCCCCCGATCG-CTAGAACGCCAATGCTGTCGGTCAGGTTCT-C--CG--G-T-----GATG
573 GGCCCCCCCGATCGTC-GGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATG
* *
15485607 GTGCCCCGATGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCC
637 GTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
* ** * * * **
15485672 TCAGTCTAGTCTGATCTGAGACTGGGAATGAACTCTGTATGCTTAGGCCGGGAATGAACTCCGTA
702 TCGGTCCGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTA
* * * * *
15485737 TGCCTAAATCAACCCATGAAATGAGCGTGCGGGTGCTCAGCCGGCCAAAGGGGCGGGATGCGCAA
767 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAA
* * * * * * * *
15485802 GCCGGGGATCGATCGGGCCCCCCTATTCATGCTGCCAATCCTACGGCCACAACCCTCAGTCTGGT
832 GCCGGGGATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGT
15485867 CCGAT
897 CCGAT
* *
15485872 CTTAGACTGGGAATGAACTTCATATGCCTAAGCCAACCGACGAAACGA----GCGGGC--GGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCG
* * * * *
15485931 GGCACTACACCGACCAGAGAGACGGGATGCGCAAACCGTCGATAGATAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
**
15485996 AGGCACATCTTCATATTTCTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
*
15486061 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGAC-ACTCGTTTTTTATTTTTCACGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * *
15486125 ACTTTTTAG-GGTTCGGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCAAAACTTTGTAG
261 ACTTTTT-GCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
* * *
15486189 ACGGGATCCTTGTATTTTTTTTTGCATGCACAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
325 ACGTGATCCTTGTATTTTTGTTGGCATGCAC-AAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
* * *
15486254 GATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACACTATAATGGCTACTGACAGCAAAC
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
*
15486319 CTGTAAAATCTCAAATGCTCTTTAA-GGGGTGTGAGTTCTTGAGGTTTGATGAGGGATAGGGGGC
454 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* * *
15486383 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAAACCCCCCCGACCCCCCCA
519 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCG
* ** *
15486448 ATC-TCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCAACGACGATGGTGCCCCTAC
583 ATCGT-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* *
15486512 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGTTGCCGCAACCCTCGGTCCAGT
647 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* * * *
15486577 -TCGATCTTAGACTAGGAATGAACTCCGCATGCTTAGACTGGGAATGAACTTCGTATGCCTAAGT
712 CT-GATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGT
* * * *
15486641 CAACCCACGAAACGAGCGTGCGAGCACCCAGCCGGCCAGAGGGGCGGGATGCGCAAGTCGGGGAT
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * ** ** * * *
15486706 CGATCGAGTGCCCCTCTGCGTGCTGCCGATCCTACTACCATAAATCTCGGTCCGGTCTGAT
841 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
* * *
15486767 CTTAGACT-GGAATGAACTCCATATGCCTAAGCCAACCGATGAAACGA----GCGGGC--GTGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCG
* * * *
15486825 GGCACTACGCCAGCCAGAGAGATGGGATGCGCAAGTCGTGGATCGACAGGGTGGTAGGTGGGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
* * **
15486890 AGGCACATCTTCACATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
131 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* **
15486955 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTTCACAATTTTCAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTA-TTTTTCACGATTTTTGA
* * *
15487020 AACTATTTGCAGTTCAGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAG
260 AACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAG
*
15487085 ACGTGATCCTTGTATTTTTGTTGGCATCCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
325 ACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
* *
15487150 ATTTTGTGTCCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAAACC
390 ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
*
15487215 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCC
455 TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
* ** *
15487280 AATATAAGGGCCAGGCGCCAGCACCCATCGCACATCATGTGCGCATC-CCCCCCGGCCCCCCCAA
520 AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCA-CACCCCCCGGCCCCCCCGA
* * * * * **
15487344 TC-TCCGAAACCCTAATGCCGCCGGTCAGGTTCTTCGGCGATGCTACGACGATGGTGCCCTAACG
584 TCGT-CGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
* * *
15487408 AAGAAAAATGCAGCACCAGCACATGCCCGAGCCTAGCATGTGTTGCCGCAA---------C--TC
648 AAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * *
15487462 ---TC--AGTCT--G---G---TCCG-AT-CTTAGACTGGGAATGAACTTCGTATGCCTAAGTCA
713 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCA
* * *
15487512 ACCCACGAAATGAGCGTGC-GGCGCTCAACCGGCCAGAGGGGCGGGATGCACAAGCCGGGGATCG
778 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * ** * *
15487576 GTCGGGTCCCCCTCCGCGTGCTGCCGATCCTGCTG-CGACAACCCTTGGACCGGTCCGAT
843 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCG-CAACCCTCAGTCTGGTCCGAT
* * * * *
15487635 CTTAGACTAGTAATGAACTCCATATGCCTAAGCCAACCGACGAAACGA----------GTGGGTG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCG
* *
15487690 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGCAGGTGGGGTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
*
15487755 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCGTACAATGGTC
131 AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
* * *
15487820 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAG--GCCTTGTTTTTTATTTTTCACGATTTTTGAA
196 CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
* * * **
15487883 ACTTTTTGTGGTTCAGGATTTTTTAAAATTTTTTCGGAAAGAGTTTTGGCCCAAAACTTTCTAGA
261 ACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
* * * **
15487948 GGGGATCCTTGTATTTTTTTTTACATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
326 CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
* * *
15488013 TTTTGTGGCCATTTGAAAAAAGTGTCCCCATTTCAGACACTGTAATGGCTACTGACAGCAAACCT
391 TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
*
15488078 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGTATAGGGGGCCA
456 GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
*
15488143 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAGACACCCCCCGGCCCCCCCGA
521 ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACACCCCCCGGCCCCCCCGA
* * * *
15488208 TCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGCAATGGTGCCCCGACGA
584 TCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
* * *
15488273 A-AAGAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTGGGTCCGGTC
649 AGAA-AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTC
* * * *
15488337 TGATCTTACACTGAGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCA
713 TGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCA
* *
15488402 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGGATCG
778 ACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * ** * * *
15488467 ATCGGGTCCACCTCTGAGTGCTATCGATCCTGCTGCCGCAACCCCCAGTCCGGTCTGAT
843 ATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
* * * ** * *
15488526 CTTAGACTGGGAATGAACTCCATATGCCAAAACCAACCGACGAAATAAGCAGGCGGGC-GGGCCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCG
* * *
15488590 ATGGCCACTACGTCGGCCAGAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCG
66 --GG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
15488655 TTTAGGCACATCTTCATATTTCTGCATGCCAAT-CCATCTTTATGGCTTGCAAATTCATACAATG
128 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * **
15488719 GTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTTGTTTTCTATTTTTCATAATTTTT
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
15488784 AAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
258 GAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * * *
15488849 AGACGTGATCCTTGTATTTTTCTTGGC-TGGCACAAAAACATTCAACTAAAAACTCGAAATGTAC
323 AGACGTGATCCTTGTATTTTTGTTGGCAT-GCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* *
15488913 AAGATTTTTTAACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
387 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* *
15488978 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGG
452 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
*
15489043 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCACAGACACCCCCCGGCCCCC
517 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC--ACACCCCCCGGCCCCC
* * * *
15489108 CCGATCGTCGGAACCTCAATGCCGCCGGTCAGGTTCTCTGACGATGCTCCGGCAATGGTGCCCCG
580 CCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * *
15489173 ACGAA-AAGAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACCCTGGGTCC
645 ACGAAGAA-AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
* * * *
15489237 GGTCTGATCTTACACTGAGAATGAACTCCATATGCTTAGACTAGGAATGAACTCCGTATGCCTAA
709 GGTCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAA
* *
15489302 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATGCGCAAGTCGGGG
774 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGG
* * ** * * *
15489367 ATCGATCGGGTCCACCTCTGAGTGCTATCGATCCTGCTGCCGCAACCCCCAGTCCGGTCTGAT
839 ATCGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
* * * ** * *
15489430 CTTAGACTGGGAATGAACTCCATATGCCAAAACCAACCGACGAAATAAGCAGGCGGGC-GGGCCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCG
* * *
15489494 ATGGCCACTACGTCGGCCAGAGAGACGGGACGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGCG
66 --GG-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
* *
15489559 TTTAGGCACATCTTCATATTTCTGCATGCCAAT-CCATCTTTATGGCTTGCAAATTCATACAATG
128 TTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* * **
15489623 GTCCCTTAAGCCTTCACGTGAAGCTTCATGGCAAGACGACTTGTTTTCTATTTTTCATAATTTTT
193 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
* * *
15489688 AAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGGCCCCAAACTTGGT
258 GAAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* * *
15489753 AGATGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTTCAGCGAAAAACTCGAAGTGTACA
323 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* *
15489818 AGATTTTGTGACCATTTGAAAAAAGTGTCCCAATTTCAGACACTTTAATGGCTACTGGCAGTAAA
388 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
*
15489883 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGACTTCTCGAGGTTTGATGAGGGATAGGGGG
453 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * * **
15489948 CCAATATAAGGGCCAAGTACCAACAACCATCGCACATCATGTGTGCACACCCCCTAGCCCCCCCG
518 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCG
*
15490013 ATCGTCGGAACCCCAATGCCACCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
583 ATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACG
*** * * *
15490078 AAGAAAAAAATGGCACCAGTACATGCCCGCA-CCCAGCATGTGCTGTCGTAACCCTCGGTCCGGT
648 AAGAAAAATGCGGCACCAGCACATGCCCG-AGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGT
* ** *
15490142 CTGATCTTACACTGGGAATGAACTTTGTATGCTTAGA-TTGGGAATGAACTCTGTATGCCTAAGT
712 CTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTT-GGAATGAACTCCGTATGCCTAAGT
* * *
15490206 CAACCCACGAAATGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGTGGGATCCGCAAGCCGGGGAT
776 CAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGAT
* * * * ** * * * *
15490271 CGGTTGGGTCCCCCTCTGCATGCTGCTGATCCTGCTGCCATAACCCTTAGTCCGATCCAAT
841 CGATCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
* * *
15490332 CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAATGA----GCAGGC--GGGCG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCG
* * * *
15490391 GGCACTACGTCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTTGTAGGTGCGTTT
66 GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
15490456 AGGCACATCTTCATA-TT-TGCACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 AGGCACATCTTCATATTTCTGCA--TGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* *
15490519 TCCCTTAAGCTTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTG
194 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTG
** *
15490584 AAACTTTTTGCGGTTTGGGGTTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
259 AAACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTA
* * * *
15490649 GATGTGATCCATGTATTTTT-TTGGCATGCACAAAAAATTTCAGCGAAAAACTCGAAGTGTACAA
324 GACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
*
15490713 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTAGCAGCAA
389 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
15490776 TATAAGGGAT
Statistics
Matches: 10774, Mismatches: 1039, Indels: 467
0.88 0.08 0.04
Matches are distributed among these distances:
862 294 0.03
863 13 0.00
864 111 0.01
865 155 0.01
867 1 0.00
868 94 0.01
869 96 0.01
870 5 0.00
871 4 0.00
872 1 0.00
873 1 0.00
874 14 0.00
875 139 0.01
876 447 0.04
877 145 0.01
878 8 0.00
879 411 0.04
880 100 0.01
881 37 0.00
882 37 0.00
883 349 0.03
884 575 0.05
885 455 0.04
886 14 0.00
887 7 0.00
888 105 0.01
889 109 0.01
890 55 0.01
891 344 0.03
892 119 0.01
893 40 0.00
894 391 0.04
895 766 0.07
896 213 0.02
897 348 0.03
898 114 0.01
899 94 0.01
900 203 0.02
901 429 0.04
902 988 0.09
903 98 0.01
904 1191 0.11
905 192 0.02
906 439 0.04
907 1022 0.09
908 1 0.00
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (901 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGGGCG
GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTT
AGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTC
CCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAA
ACTTTTTGCGGTTCAGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGA
CGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGA
TTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCT
GTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCA
ATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATC
GTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGAAG
AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGGTCTGA
TCTTAGACTGGGAATGAACTCCGTATGCTTAGACTTGGAATGAACTCCGTATGCCTAAGTCAACC
CACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGATC
GGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCGCAACCCTCAGTCTGGTCCGAT
Found at i:15492364 original size:26 final size:26
Alignment explanation
Indices: 15492328--15492380 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15492318 CTGGTCTGAT
15492328 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15492354 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15492380 C
1 C
15492381 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15493243 original size:26 final size:26
Alignment explanation
Indices: 15493214--15493265 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15493204 TCTGGTCCGA
*
15493214 TCTTCGACTAGGAATGAACTCCGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
* *
15493240 TCTTAGACTGGGAATGAACTCTGTAT
1 TCTTAGACTAGGAATGAACTCCGTAT
15493266 GCCTAAGTCA
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (26 bp):
TCTTAGACTAGGAATGAACTCCGTAT
Found at i:15493679 original size:26 final size:26
Alignment explanation
Indices: 15493649--15493698 Score: 75
Period size: 26 Copynumber: 1.9 Consensus size: 26
15493639 CCGCTCCGAT
*
15493649 CTTAGACTGGGAATGAA-CTCCGTAAG
1 CTTAGACTAGGAAT-AAGCTCCGTAAG
15493675 CTTAGACTAGGAATAAGCTCCGTA
1 CTTAGACTAGGAATAAGCTCCGTA
15493699 TGCCTAAGTC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 2 0.09
26 20 0.91
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.24
Consensus pattern (26 bp):
CTTAGACTAGGAATAAGCTCCGTAAG
Found at i:15493702 original size:434 final size:436
Alignment explanation
Indices: 15492889--15493756 Score: 1334
Period size: 434 Copynumber: 2.0 Consensus size: 436
15492879 AAACTCGAAT
* **
15492889 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
1 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATAACTACTGGC
*
15492954 AGCAAACCTGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
66 AGCAAACCAGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
* *
15493019 AAGGGGGCAAATATAAGGGCCAAGTAGCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGG
131 AAGGGGGCAAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGG
**
15493084 CCCCCCCGATTGTCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAAGGTGCCCCGACGAAG
196 CCCCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAAGGTGCCCCGACGAAG
* ** * *
15493149 AAAAATGTGAAACCAGCACATCCCCGAGCCCAGCATGTGCTGTCGCAACCCTCAGTCTGGTCCGA
261 AAAAATGTCAAACCAGCACATCCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGCTCCGA
* ** * *
15493214 TCTTCGACTAGGAATGAACTCCGTATTCTTAGACTGGGAATGAACTCTGTATGCCTAAGTCAACC
326 TCTTAGACTAGGAATGAACTCCGTAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
* *
15493279 CACGAAACAAGCGTACGGGAGCTCAGTTGGCCAGAAGGGCGGGAAG
391 CACAAAACAAGCGTACGGGAGCTCAGTCGGCCAGAAGGGCGGGAAG
15493325 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATAACTACTGGC
1 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATAACTACTGGC
*
15493390 AGCAAACCAGTAAAATCTCAAATGCTCTTTAA-GAGGTTGTGAGTTCTCGAGGTTTGATGAGGGA
66 AGCAAACCAGTAAAATCTCAAATGCTCTTTAATG-GGGTGTGAGTTCTCGAGGTTTGATGAGGGA
*
15493454 T-AGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCT-CG
130 TAAGGGGGCAAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCG
* * * * * *
15493517 GCCCCCCCGATCATTGGAACCCCAATGCCGCTGGTCAGGTTCTCCGGTGATGGTGCCCCGATGAA
195 GCCCCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAAGGTGCCCCGACGAA
* *
15493582 GAAAAATG-CATCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTC-GATCCGCTC
260 GAAAAATGTCA-AACCAGCACATCCCCGAGCCCAGCATGTGCTACCGCAACCCTCAG-TCCGCTC
*
15493645 CGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTAGGAAT-AAGCTCCGTATGCCTAAGTC
323 CGATCTTAGACTAGGAATGAACTCCGTAAGCTTAGACTAGGAATGAA-CTCCGTATGCCTAAGTC
* * * * *
15493709 AACCCATAAAACAAGCGTGCGGGTGCTTAGTCGGCCAGAGGGGCGGGA
387 AACCCACAAAACAAGCGTACGGGAGCTCAGTCGGCCAGAAGGGCGGGA
15493757 TGCGCAAGCC
Statistics
Matches: 392, Mismatches: 36, Indels: 10
0.89 0.08 0.02
Matches are distributed among these distances:
433 4 0.01
434 207 0.53
435 58 0.15
436 123 0.31
ACGTcount: A:0.27, C:0.27, G:0.25, T:0.21
Consensus pattern (436 bp):
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATAACTACTGGC
AGCAAACCAGTAAAATCTCAAATGCTCTTTAATGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AAGGGGGCAAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCTCCGG
CCCCCCCGATCATCGAAACCCCAATGCCGCCGGTCAGGTTCTCCGGCGAAGGTGCCCCGACGAAG
AAAAATGTCAAACCAGCACATCCCCGAGCCCAGCATGTGCTACCGCAACCCTCAGTCCGCTCCGA
TCTTAGACTAGGAATGAACTCCGTAAGCTTAGACTAGGAATGAACTCCGTATGCCTAAGTCAACC
CACAAAACAAGCGTACGGGAGCTCAGTCGGCCAGAAGGGCGGGAAG
Found at i:15494549 original size:26 final size:26
Alignment explanation
Indices: 15494510--15494562 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15494500 CCGATCTGAT
*
15494510 CTTAGACTGTGAATGAACCCCATATG
1 CTTAGACTGGGAATGAACCCCATATG
* *
15494536 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACCCCATATG
15494562 C
1 C
15494563 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACCCCATATG
Found at i:15495511 original size:877 final size:866
Alignment explanation
Indices: 15493323--15496020 Score: 2924
Period size: 877 Copynumber: 3.1 Consensus size: 866
15493313 AAGGGCGGGA
* **
15493323 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGCCCCCATTTCAGACACTTTAATAACTACTG
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
* *
15493388 GCAGCAAACCAGTAAAATCTCAAATGCTCTTTAAGAGGTTGTGAGTTCTCGAGGTTTGATGAGGG
66 GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGG
*
15493453 ATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGG
131 ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC-G
***
15493518 CCCCCCCGATCATTGGAACCCCAATGCCGCTGGTCAGGTTCT-C--CG--G-T---GATGGTGCC
195 CCCCCCCGATCGCCGGAACCCCAATGCCGC-GGTCAGGTTCTCCGACGATGCTCGCGATGGTGCC
* * *
15493574 CCGATGAAGAAAAATGCATCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGAT
259 CCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGT
* *
15493639 CCGCTCCGATCTTAGACTGGGAATGAACTCCGTAAGCTTAGACTAGGAATAAGCTCCGTATGCCT
324 CCGGTCCGATC-T-G-CT-----TG-ACT--G---G----GA--ATG---AA-CTCCGTATGCCT
* * * * *
15493704 AAGTCAACCCATAAAACAAGCGTGCGGGTGCTTAG-TCGGCCAGAGGGGCGGGATGCGCAAGCCG
365 AAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCT-GGCCAGAGGGGTGGGATGCGCAAGCCG
* * * *
15493768 GGGATC-AGTCGAGTCCCCTTCTACGTGCTATCGATCCTGCTACCACAACCCTCAGTCCAGTCTG
429 GGGATCGA-TCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCGCAACCCTCA-TCCAGTCTG
* ** *
15493832 ATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCCACGAAACGAGCGGGCGGGCGGGCA
492 ATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCG
* * * * * **
15493897 GGCGGGCACTACGCCGGCTAGAGAGATGGATGCGCGAG-CGTCTGGATCG-T---TGGTTGG-CC
557 GGCGGGCACTACGTCGGCCAGAGAGACGGATGCGCAAGCCG--TGGATCGATGGGTGGTAGGTGG
* * * * *
15493956 CTTTA-GCCCATCTTCATATTT-TCAACTGCCATTGCCATTTTAATGGCATTGTAAATTC-TACA
620 GTTTAGGCACATCTTCATATTTCT-AAATGCCAATGCCATTTTTATGGC-TTGTAAATTCATACA
* * * *
15494018 ATGGTCC-T--GCC--CACGTGAAGTTTCATGGC-A-ACAACTGAGTTTTCTGTTTTTCATG--T
683 ATGGTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-CGTTTTCTATTTTTCACGATT
* * * * *
15494074 TTTGAAA-TTCTTGCGGTTTGAGATTTTTTAAAATTTTTT--GAAGCA-TTTG-CCCAAA-TCT-
747 TTTGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGATTTTGCCCCAAACT-TG
* * * * * * *
15494132 -TACACGTGATCCTTGTATTTTTTTTTGCATCCAGAAACAATTCAGCTAATAACTCG
811 GTAGACGAGATCCTTGTATTTTTGTTGGCATGCAAAAAAAATTCAGCTAA-AACTCG
* * *
15494188 AATGTACAAGAGTTTGTGACCATTTGAAAAAAGTGT-CCGA-TTCAGACAC-TTAATGGCTCACT
1 AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT-ACT
*
15494250 GGCAGCAAACCTG-AAAATCTC-AATGCTC-TTAAAAGGGTGTGA-TTCTCGAGG-TTGATGA-G
65 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
15494309 GA-A-GGTG-C-ATA-AA-GGCCAAGTACCAGCACCCACCGCACATCATGTGCGC-TACCCCTCA
130 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTC-
* *
15494367 GCCCCCCCGATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGATGATACTCTGGCGATGGT
194 GCCCCCCCGATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCTC--GCGATGGT
* * * *
15494432 GCCCCGACGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGTTGTCGTAACCCTC
256 GCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTC
*
15494497 AGTCCGATCTGATCTTAGACTGTGAATGAACCCCATATGCTTAGACTGGGAATGAACTCCGTATG
321 GGTCCG----G-TC-----C---G-AT------C---TGCTT-GACTGGGAATGAACTCCGTATG
* *
15494562 CCTAAGTCAACCCATGGAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGTGGGATGAGCAAGC
362 CCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTCAGCTGGCCAGAGGGGTGGGATGCGCAAGC
* * *
15494627 CGGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTGTTACCGCAACCCTCCATCCAGTCT
427 CGGGGATCGATCGGGTCCCCCTCTGCGTGCTATCGATCCTGCTACCGCAACCCT-CATCCAGTCT
* * *
15494692 AATCTTAGACTGGGTATGAACTCCGTATGGCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGC
491 GATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGC
* *
15494757 GGGCGGGCATTACGTCGGCCAGAGAGACGAGATGCGCAAGCCGTGGAACGATAGGGTGGTAGGTG
556 GGGCGGGCACTACGTCGGCCAGAGAGACG-GATGCGCAAGCCGTGGATCGAT-GGGTGGTAGGTG
** *
15494822 GGTTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGAAAATTCATACAA
619 GGTTTAGGCACATCTTCATATTTCTAAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
15494887 TGGTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
684 TGGTCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTT
*
15494952 TGAAACTTTTTACGGTTCGGGATTTTTTAAAATTTTTTCAAAAGGAGTTTTGGCCCCAAACTTGG
749 TGAAACTTTTTACGGTTCGAGATTTTTTAAAATTTTTTCAAAAGGA-TTTT-GCCCCAAACTTGG
*
15495017 TAGACGAGATCCTTGTATTTTTGTTGGCATGCATAAAAAAAGTCAGCTAAAAGCTCG
812 TAGACGAGATCCTTGTATTTTTGTTGGCATGCA-AAAAAAATTCAGCTAAAA-CTCG
* *
15495074 AGGTGTACAGGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTGCT
1 A-GTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
15495139 GGCAGCAAACCTGTAAAATCTCAAATGTTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
65 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
15495204 GATAGGGGGCCAATATAAGGGCCAAGTACTAGCACCCATCGCACATCTTGCGCGCACACCCCTC-
130 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCG
*
15495268 CCTGCCCTCCGATTGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCCGACGATG
195 CC--CCC-CCGATCGCCGGAACCCCAATGCCG-CGGTCAGGTTCTCCGACGATGCT-CG-CGATG
* * * * *
15495333 GTGGCCCGATGAAGAAAAATACGGCACCAGCACATGCCCAAGCCCAGCATGGGCTGCCGCAACCC
254 GTGCCCCGATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCC
*
15495398 TCGGTCCGGTCCGATC-G-TTGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGA
319 TCGGTCCGGTCCGATCTGCTTGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGA
* * * * * *
15495461 GCGTGCGGGCACTCAGCTGGCTAGAAGGGTGGGATCCGTAAGCTGGGGATCGATCGGGTCCCCCT
384 GCGTGCGGGCGCTCAGCTGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCT
* ** * **
15495526 CTGCGTGCTATCGATCCTGCTACCGTAACCCTTGGTCC-GATCCGATCTTAGACTAAGAATGAAC
449 CTGCGTGCTATCGATCCTGCTACCGCAACCC-TCATCCAG-TCTGATCTTAGACTGGGAATGAAC
* * * * * * * * *
15495590 TCCGTATGCCTAAGGCAATTGACTAAACGAGCTGGCTGACGAGCGGACGGGCAGTACGTCGGCCA
512 TCCGTATGCCTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCA
* *
15495655 GGGAGACGGGATGCGCACA-CCGTGGATCGATTGGGTGGTAGGTGGGTTTAGGTACATCTTCATA
577 GAGAGAC-GGATGCGCA-AGCCGTGGATCGA-TGGGTGGTAGGTGGGTTTAGGCACATCTTCATA
** * * *
15495719 TTTCTGCATGCCAATGCCATTTTTATGGCATGTAAATTCATACAATGGCCCCTTAAGCCTTCATG
639 TTTCTAAATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG-TCCTTAAGCCTTCACG
* ** *
15495784 TGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCACGATTTTCAAAACTTTTTTCGG-TCG
703 TGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCG
* * * *
15495848 AGATTTTTAAAAATCTTTTCAAAAGGATTTTTAGCCCAAAACTTGGTAGACGCGATCCTTGTATT
768 AGATTTTTTAAAATTTTTTCAAAAGGA-TTTT-GCCCCAAACTTGGTAGACGAGATCCTTGTATT
*
15495913 TTTGTTGGCATGCACAAAAGAATTCAGCTAAAAACT-G
831 TTTGTTGGCATGCA-AAAAAAATTCAGCT-AAAACTCG
15495950 AAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
1 --AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
*
15496015 TAGCAG
64 TGGCAG
15496021 TAATATAAGG
Statistics
Matches: 1560, Mismatches: 171, Indels: 192
0.81 0.09 0.10
Matches are distributed among these distances:
850 45 0.03
851 36 0.02
852 2 0.00
853 4 0.00
854 1 0.00
855 3 0.00
856 2 0.00
857 3 0.00
858 7 0.00
859 9 0.01
860 12 0.01
861 283 0.18
862 31 0.02
863 26 0.02
864 3 0.00
865 35 0.02
866 8 0.01
867 15 0.01
868 46 0.03
869 2 0.00
871 5 0.00
873 18 0.01
874 18 0.01
875 7 0.00
876 14 0.01
877 485 0.31
878 82 0.05
879 5 0.00
881 6 0.00
882 2 0.00
883 9 0.01
884 1 0.00
885 30 0.02
886 18 0.01
887 32 0.02
888 3 0.00
889 26 0.02
890 18 0.01
891 6 0.00
892 12 0.01
893 9 0.01
894 7 0.00
895 3 0.00
896 1 0.00
897 3 0.00
898 3 0.00
899 4 0.00
900 4 0.00
901 32 0.02
902 11 0.01
903 112 0.07
904 1 0.00
ACGTcount: A:0.25, C:0.25, G:0.25, T:0.25
Consensus pattern (866 bp):
AGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTG
GCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGTGAGTTCTCGAGGTTTGATGAGGG
ATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCTCGC
CCCCCCGATCGCCGGAACCCCAATGCCGCGGTCAGGTTCTCCGACGATGCTCGCGATGGTGCCCC
GATGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCC
GGTCCGATCTGCTTGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCATGAAACGAGCGTGCG
GGCGCTCAGCTGGCCAGAGGGGTGGGATGCGCAAGCCGGGGATCGATCGGGTCCCCCTCTGCGTG
CTATCGATCCTGCTACCGCAACCCTCATCCAGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
CTAAGCCAACTGACGAAACGAGCGGGCGGGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGG
ATGCGCAAGCCGTGGATCGATGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTAAATGCC
AATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCTTAAGCCTTCACGTGAAGTTTCATGG
CAAGACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTTTTTACGGTTCGAGATTTTTTAAAA
TTTTTTCAAAAGGATTTTGCCCCAAACTTGGTAGACGAGATCCTTGTATTTTTGTTGGCATGCAA
AAAAAATTCAGCTAAAACTCG
Found at i:15497895 original size:26 final size:26
Alignment explanation
Indices: 15497866--15497918 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15497856 CCGGTCCAAT
15497866 CTTAGACTGGGAATGAACTCCGCATG
1 CTTAGACTGGGAATGAACTCCGCATG
*
15497892 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGCATG
15497918 C
1 C
15497919 CTAGGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGCATG
Found at i:15498785 original size:26 final size:26
Alignment explanation
Indices: 15498756--15498808 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15498746 CTGATCCGAT
* *
15498756 CTTATACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
15498782 CTTAGACTGGGAATGAACTCAGTATG
1 CTTAGACTGGGAATGAACTCAGTATG
15498808 C
1 C
15498809 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCAGTATG
Found at i:15499734 original size:905 final size:900
Alignment explanation
Indices: 15496817--15501480 Score: 6023
Period size: 905 Copynumber: 5.2 Consensus size: 900
15496807 GGGTTTAGGG
* *
15496817 ACACCCCCCGGCCCCCCCGATCGCCGGAACCCCAATGCCGTCGGTCAGGTTCTCCGGCGATGCTC
1 ACACCCCCCGGCCCCCCCGATCG-TGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* * * * * * * *
15496882 TGGCGATGGTGCCCCGATGAAAAAAAATACAGCACCAACACATGCCCAAGCCCAGCATGTGCTGT
65 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGC
* * * *
15496947 CGCAACCCTCGGTCTGGTCCGATCTTAGACTGTGAATGAACTCCATATGCTTAGACTGAGAATGA
130 CACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * **
15497012 ACTCCGTATTCCTAAGTCAACCCACGAAACGAGCGTGTGGGCGCTCAGCTGGCCAGAGGGGTAGG
195 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * ** * * *
15497077 ATGAGCAAGCGAGGATCGTCTGGGTCCCCCTGTGCATGCTATCGATCCTACTGCCACAACCCTCC
260 ATGCGCAAGCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCATAACCCTCG
* ** * * * *
15497142 ATCCAGTCTGATCTTAGACTGGGTATGAACTCCGTATGCCTAAGCCAACTGACGAAATGAGC--G
325 GTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGG
* * * * *
15497205 -GG-CGGGCGGGC-GAGCACTATGCTGACCAGAGAGACGGGATGCGCAAGCTGTGGAACGATAGG
390 CGGACGGGCGGGCGGA-CACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
15497267 GTGGTAGGT-GGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
454 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
*
15497331 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTTCTATTT
519 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * * *
15497396 TTCATGATTTTCAAAACTTTTTGCGGTTCGGGGTTTTTTAAACTTTTTTCGGATGGAGTCTTCGC
584 TTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGC
* *
15497461 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTTAGCTAAAAAC
649 CCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAAAC
* * *
15497526 TCAAAGTGTTCAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCT
713 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
*
15497591 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATG
778 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* *
15497656 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGAGAGC
843 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
*
15497714 ACACCCCCCGG-CCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTC
1 ACACCCCCCGGCCCCCCCGATCGT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
** * * * *
15497778 CGGTGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGGATGTGTTGT
65 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGC
* * *
15497843 CACAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGCATGCTTAGACTGGGAATGA
130 CACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * * *
15497908 ACTCCGTATGCCTAGGTCAACCCATGAAACGAGCGTGCAGGCGTTCAGTCGGCAAGAGGGGCGGG
195 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
** * * * * *
15497973 ATAG-GCAAAATGGGCATCGACTAGGTGCCCCTCCGCATGCTGCCGATCCTGCTGCCGTAACCCT
260 AT-GCGC-AAGCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCATAACCCT
* * * *
15498037 CGGTCTGGTCTGATCTTAGCCTAGGAATGAACTTCGTCTGCCTAAGCCAACCGACGAAACGAGCA
323 CGGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCG
* * * ** * * *
15498102 GGCGGGCGGGCGAGCGGGA-ACTACGCCGACTGGAGAGATGGGATGCGCAAGCCAG-GGATAGAA
388 GGCGGACGGGCGGGC-GGACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCC-GTGGATCGAT
* *
15498165 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGGCTT
451 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTAT-GGCTT
*
15498230 GTAAATTCATACAATGGTTCCTTAAGCCGTTCACGTTGAAGTTTCATGGCAAGACGAACTCGTTT
515 GTAAATTCATACAATGGTCCCTTAAGCC-TTCACG-TGAAGTTTCATGGCAAGACG-ACTCG-TT
* * * *
15498295 TTCTATTTTTCATGCATTTTTTAAAAC-TTTTGCCGTTAGGAGA--TTTTAAAAGTTTTTCGAAA
576 TTCTATTTTTCATG-A-TTTTTAAAACTTTTTGCGGTTCGG-GATTTTTTAAAATTTTTTCGGAA
* *
15498357 GGGAGTTTTGGCCTCAAAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATAGCACAAAAAA
638 -GGAGTTTTGGCC-CCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCAT-GCACAAAAAA
* * * * *
15498422 TTCAGCTAGAAAACTGGAAGTTTACACGATTTTGTGACCATCTGAAAAAAG-GTCCCCTATTTTA
700 TTCAGCTA-AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCC-ATTTCA
* *
15498486 GACTACTTTAATGGCTACTGCCAGGCAAACCTGTAAAATCTCAAATGCTCTTTAAGAGGGTGT-A
763 GAC-ACTTTAATGGCTACTGGCA-GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGA
* * *
15498550 G-TCTCAAGGCTTGCATGA-GGATAGGGGGCCAATATAAGTGCCAAGTACCAG-ACCCATCAG-A
826 GTTCTCGAGGTTTG-ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC-GCA
15498611 CATCATGTGCGC
889 CATCATGTGCGC
* * * * *
15498623 ACA---------CCCCCCGATCGTCAGAACCCTAAT---GT-GG-CCGG---T-C-A-GGTTCTC
1 ACACCCCCCGGCCCCCCCGATCGT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
** * *
15498668 CGACGATGGTGCCCCGGTGAAGAAAAATGTGGCACCAGCACATTCCCAAGCCCAGCATGTGCTGC
65 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGC
* * * *
15498733 CGCAACCCTCGGTCTGATCCGATCTTATACTGGGAATGAACTCTGTATGCTTAGACTGGGAATGA
130 CACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* *
15498798 ACTCAGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGG
195 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* ** * * * * *
15498863 ATGCGCAAGCAGGGGATCGGCTGGGTCCTGCTCTACGTGCTGCCGATCCTGCTGCCGTAGCCCTT
260 ATGCGCAAGC-GGGGATCGACTGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCATAACCCTC
* * * *
15498928 GATCCGGTTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAATGAGCGG
324 GGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGG
* * * *
15498993 GCGGACGGGCGGGCGGACACTACGTCGGCCAGAGAGATGGGATGCGCAAGCCATGGATCGATAGA
389 GCGGACGGGCGGGCGGACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGG
* * * **
15499058 GTAGTAGGTGGGTTTAGGCACATCTTAATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAA
454 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAA
*
15499123 ATTCATACAGTGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACT-GATTTTCTATT
519 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATT
* * *
15499187 TTTTATGATTTTCAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGATGGA-TTCTTG
583 TTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT-TTG
* *
15499251 GCCCCAAACTTGGTATACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAATTTCAGCTAAAA
647 GCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAA-TTCAGCTAAAA
15499316 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
711 ACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGG
15499381 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
776 CTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGA
* *
15499446 TGAGGGATAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCACACATCATGTGCGC
841 TGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * **
15499506 ACACCCCCCCCGGCCCCCCCGATCGCTGGAACCCCTATGCCGCCAATCAGGTTCTCCGACGATGC
1 ACA--CCCCCCGGCCCCCCCGATCG-TGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGC
* * *
15499571 TCCGACGATGGTGCCCCGGCGAAGAAAAATGTGGCACCAGCAAATGCCCAAGCCCAGCATGTGCT
63 TCCGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCT
15499636 GCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
128 GCCACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAAT
* * * * *
15499701 GAACTCTGTACGCCTAAGTCAACCCATGAAACGAGCGTGCGGGCGCTGAGCCGGCCAGAGGGGTG
193 GAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCG
* * * * *
15499766 GGATGCACAAGCCGGGGATCGACCGGGTCCCCCTCGGCATGCTGCTGATCCTACTGCCATAACCC
258 GGATGCGCAAG-CGGGGATCGACTGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCATAACCC
* * ** * *
15499831 TTGGTCTGGTCTGATCTGAGACTGGGAATGAAC-TCTGTACACCCAAGCCAACTGACGAAACGAG
322 TCGGTCTGGTCTGATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGAAACGAG
* * * *
15499895 CTGGCTGACGGGCGGGCGTG-CACTACGCCCGCCAGAGAGAAGGGATGCGCAAGCCGTGGATCGA
386 CGGGCGGACGGGCGGGCG-GACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
15499959 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
450 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTT
*
15500024 GTAAATTCATTCAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
515 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
** * * * *
15500089 ATTTTTCACAATTTTTGAAACTTTTTACGG-TCGAGATTTTTTAAAATTTTTTTGGAAGGAGTTT
580 ATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTT
* * *
15500153 TGGCCCTC-AACTTGGTAAAAGTGATCCTTTTATTTTTGTTGGCATGCACAAAACAATTCAGCTA
645 TGGCCC-CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTA
* *
15500217 AAAACTCGAAGTGTATAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGAAACTTTAA
708 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * *
15500282 TGGCTACTGGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAAGTT
773 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* **
15500347 TGAAGAGGGATAGGGGGCCAATATAAGGGCCAAGTATGAGCACCCATCGCACATCATGTGCGC
838 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* * * * * * *
15500410 ACACCCCCTGGCCCCCCCGATCGTCGAAACCCTAATTCCGTCGGTCATGTTCTTCGGCGATGCTC
1 ACACCCCCCGGCCCCCCCGATCGT-GGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* *
15500475 CGACAATGGTG-CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGC
65 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGC
* ** * * ** * * *
15500539 CGCAACCCTCAATCTAGTCTGATCTTCTACTGCGAATGAACTGCGTATGCTTAGACTGGGAAGGA
130 CACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGA
* * * * *
15500604 ACTCCGTATGCCTGAGTCAACCCACAAAACAAGCGTGCGGGCGCTCAACCGGCCAGAAGGGCGGG
195 ACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGG
* * * * *
15500669 ATGCGCAAGTCGGGGATCGACTGAGTCCCCCTCTACGTGTTGCCGATCCTGCTGCCACAACCCTC
260 ATGCGCAAG-CGGGGATCGACTGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCATAACCCTC
* * * * * *
15500734 GGTCTGGTCGGATCTTATACTGGGAATGAACTCCATATGCCTAAGCCAATCGACGAAACGAGCGA
324 GGTCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGG
*
15500799 GCGGGCAGGCGGGCGGGCAGG-CACTACGCCGGCCAGAGAGACGGGATACGCAAGCCGTGGATCG
389 GC-GG-A--CGGGCGGGC-GGACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
15500863 ATACGGTGGTAGGTGGGTTTAGGCACGTCTTCATATTTCTACATGCCAATGCCATTTTTATGGCT
449 ATAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCT
*
15500928 TGTAAATTCATACAATGGTCTCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
514 TGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTC
** * *
15500993 TATTTTTCACAATTTTTGAAACTTTTTGCGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
579 TATTTTTCATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTT
* * *
15501058 TTGGCCCCAAAC-T--TAGATGTGATCCTTGTATTTTTGTTGGCTTTCACAAAACAATTCAGCTA
644 TTGGCCCCAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAA-AATTCAGCTA
* * * *
15501120 AAAACTTGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACATTTTAA
708 AAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAA
* * * *
15501185 GGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGAGTGAGTTATCGAGGTT
773 TGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTT
* * * *
15501250 TGAAGAGGGATAGGGGGCCAATATAAGTGCCAAGTACCAGCACCCATTGCACATCATGTGTGC
838 TGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
* *
15501313 ACACCCCCCGGTCCCCCCGATCGTTGGAACCCCAATGCCGTCAGTCAGGTTCT-C--C---G---
1 ACACCCCCCGGCCCCCCCGATCG-TGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTC
* ** * * * * * * *
15501369 -G-CGATTGTG-CCCGACGATCAAAAATGTGGCACCAGCACATGCTCGAGGCCAGTAAGTGCTAC
65 CGACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGC
** *
15501431 CACAACCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGC
130 CACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGC
15501481 CTAAGTCAAC
Statistics
Matches: 3289, Mismatches: 395, Indels: 171
0.85 0.10 0.04
Matches are distributed among these distances:
880 38 0.01
881 24 0.01
882 97 0.03
883 86 0.03
884 21 0.01
885 32 0.01
886 3 0.00
887 20 0.01
888 6 0.00
889 37 0.01
890 380 0.12
891 1 0.00
892 93 0.03
893 2 0.00
894 19 0.01
895 1 0.00
896 223 0.07
897 112 0.03
898 1 0.00
899 4 0.00
900 3 0.00
901 341 0.10
902 108 0.03
903 299 0.09
904 279 0.08
905 720 0.22
906 48 0.01
907 31 0.01
908 22 0.01
909 81 0.02
910 95 0.03
911 24 0.01
912 38 0.01
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.25
Consensus pattern (900 bp):
ACACCCCCCGGCCCCCCCGATCGTGGAACCCCAATGCCGTCGGTCAGGTTCTCCGACGATGCTCC
GACGATGGTGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCAAGCCCAGCATGTGCTGCC
ACAACCCTCGGTCTGGTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGA
TGCGCAAGCGGGGATCGACTGGGTCCCCCTCTGCATGCTGCCGATCCTGCTGCCATAACCCTCGG
TCTGGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGGC
GGACGGGCGGGCGGACACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGT
GGTAGGTGGGTTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAAT
TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTT
CATGATTTTTAAAACTTTTTGCGGTTCGGGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCC
CAAACTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCG
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGC
Found at i:15503194 original size:156 final size:159
Alignment explanation
Indices: 15502841--15503222 Score: 448
Period size: 159 Copynumber: 2.4 Consensus size: 159
15502831 GGCCAGTAAG
* * * * * *
15502841 TGCTACCACAATCCTCGGTCCAGTCCGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGTCAA
1 TGCTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
** ** * * * *
15502906 CCCATGGAACGAGTGTACAGGCGCTCAGCTGGCCTAAGGGGCGAGATGCGCAAGTCGGGGATCAA
66 CCCATAAAACGAAAGTACAGGCGCTCAGCCGGCCTAAGGGGCGAGATGAGCAAGCCGAGGATCAA
*
15502971 CCGGGTCCCCCGCTGCGTGTTGTCGATCC
131 CCGGGTCCCCCGCTGCGTGCTGTCGATCC
** * * *
15503000 TGCTGTCGCAACCCTCAGTCCGATCCAATCTTATACTGGGAATGAACTCCGTATGCCTAGGTCAA
1 TGCTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
* * * * *
15503065 CCCATAAAAGGAAAGTGCGGGCGCTCAGCCGGCCGT-AGGGG-G-GATGAGTAAGCCGAGGATCG
66 CCCATAAAACGAAAGTACAGGCGCTCAGCCGGCC-TAAGGGGCGAGATGAGCAAGCCGAGGATCA
* * *
15503127 GCC-GGTCCCCCTCTGCGTGCTGTCGATCT
130 ACCGGGTCCCCCGCTGCGTGCTGTCGATCC
* * *
15503156 TGCTACCGCAACCCTCAGTCTGGTCCAATCTTAGACTGGGAATGAACTCCTTATGCCTAAGCCAA
1 TGCTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
15503221 CC
66 CC
15503223 GACGAAACGA
Statistics
Matches: 186, Mismatches: 36, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
156 82 0.44
157 17 0.09
158 1 0.01
159 85 0.46
160 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.27, T:0.21
Consensus pattern (159 bp):
TGCTACCGCAACCCTCAGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAA
CCCATAAAACGAAAGTACAGGCGCTCAGCCGGCCTAAGGGGCGAGATGAGCAAGCCGAGGATCAA
CCGGGTCCCCCGCTGCGTGCTGTCGATCC
Found at i:15503928 original size:26 final size:26
Alignment explanation
Indices: 15503899--15503951 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15503889 TTTGGTCCGA
15503899 GCTTAGACTAGGAATGAACTCCGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
*
15503925 GCTTAGACTGGGAATGAACTCCGTAT
1 GCTTAGACTAGGAATGAACTCCGTAT
15503951 G
1 G
15503952 GCTAAGTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.26, T:0.26
Consensus pattern (26 bp):
GCTTAGACTAGGAATGAACTCCGTAT
Found at i:15504235 original size:158 final size:159
Alignment explanation
Indices: 15503926--15504273 Score: 414
Period size: 158 Copynumber: 2.2 Consensus size: 159
15503916 ACTCCGTATG
* * * *
15503926 CTTAGACTGGGAATGAACTCCGTATGGCTAAGTCAACGCACGAAACGAGCGTGCGGGCGCTAAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCCGGCGCTAAGC
* *
15503991 CGGCCAGAGGGGCAGGATGCATAAGACGGGGATCGCCTAGGTCCCCCTCTGTGTGCTGCCAATCC
66 CGGCCAGAGGGGCAGGATGCACAAGACGGGGATCGCCTAGGTCCCCCTCTGCGTGCTGCCAATCC
* * *
15504056 TGCTGCTCCAACCCTCGGTCCGATTTGAT
131 TACTGCTCCAACCCTCAGTCCGATCTGAT
* *
15504085 CTT-GACTGGGAATGAACTCCGTATGCCTAACTCAACCCATGAAACGAGGGTGCCGGCGCTCAA-
1 CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCCGGCGCT-AAG
* * ** * * * * *
15504148 CCGGCCAGAGGTGCGGGATGTGCAAGCCGGGGATCG-ATCGGGTCCCCCTCTGCGTGCTGTCGAT
65 CCGGCCAGAGGGGCAGGATGCACAAGACGGGGATCGCCT-AGGTCCCCCTCTGCGTGCTGCCAAT
* ** * *
15504212 CCTACTGTTGTAACCTTCAGTCCGGTCTGAT
129 CCTACTGCTCCAACCCTCAGTCCGATCTGAT
* *
15504243 CTTAGATTGGGAATGAACTCCATATGCCTAA
1 CTTAGACTGGGAATGAACTCCGTATGCCTAA
15504274 GCCAACCGAC
Statistics
Matches: 159, Mismatches: 27, Indels: 6
0.83 0.14 0.03
Matches are distributed among these distances:
157 1 0.01
158 128 0.81
159 30 0.19
ACGTcount: A:0.21, C:0.28, G:0.29, T:0.22
Consensus pattern (159 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAACTCAACCCACGAAACGAGCGTGCCGGCGCTAAGC
CGGCCAGAGGGGCAGGATGCACAAGACGGGGATCGCCTAGGTCCCCCTCTGCGTGCTGCCAATCC
TACTGCTCCAACCCTCAGTCCGATCTGAT
Found at i:15505755 original size:872 final size:873
Alignment explanation
Indices: 15504056--15505855 Score: 2651
Period size: 872 Copynumber: 2.1 Consensus size: 873
15504046 CTGCCAATCC
* * *
15504056 TGCTGCTC-CAACCCTCGGTCCGATTTGATCTT-GACTGGGAATGAACTCCGTATGCCTAACTCA
1 TGCTGC-CGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCA
* * * *
15504119 ACCCATGAAACGAGGGTGCCGGCGCTCAACCGGCCAGAGGTGCGGGATGTGCAAGCCGGGGATCG
65 ACCCACGAAACGAGCGTGCCGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * *** * * * **
15504184 ATCGGGTCCCCCTCTGCGTGCTGTCGATCCTACTGTTGTAACCTTCAGTCCGGTCTGATCTTAGA
130 ACCGGGTCCCCCTCTGCGTGCTATCGATCCTACTACCGCAACCGTCAGTCCAGTCCCATCTTAGA
* * * *
15504249 TTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAATGAGCGGCCAGGCGGGCGGGCACTAC
195 CTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAATGAGAGGCCAGGCAGACGGGCACTAC
* * *
15504314 ACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGCACAT
260 ACCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAAAAT
* * *
15504379 CTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCCTTGAGC
325 CTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGC
* *
15504444 CTTCACATGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAACTTTTTA
390 CTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTA
* * *
15504509 CGGTTTGGGATTTTTTAAAATTTTTTCGGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATCC
455 CGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATAC
*
15504574 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTTGAAGTGTACAAGATTTTGTGA
520 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
* * *
15504639 CCATTTGGAAAAAGTGTCCCTATTTCAGACACTTTAATGGCTATTGGCAACAAACCTGTAAAATC
585 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATC
* * * * *
15504704 TCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGTGGCCAATATAAGG
650 TCAAATGCTCTTCAAAGGCGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
* * * * *
15504769 GCCAAGTTCCAGCACCCATCGCACATCATGTTCGCAGACACCCCCGGCCCCTCGATCATCGGAAC
715 GCCAAGTTCCAGCACACATCGCACATCATGTGCGCACACACCCCCGCCCCCCCGATCATCGGAAC
* * **
15504834 CCCAATGCCACCGGTCAGGTTCTTTGACGATGCTCTTGCGATGGTGCCCCGACGAAGAAAAATAC
780 CCCAATGCCACCGATCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATAC
*
15504899 GGCACCAGCACATACCCGAGCCCAGCATG
845 GACACCAGCACATACCCGAGCCCAGCATG
* * **
15504928 TGC-GATCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATTCCTAGGTCA
1 TGCTG-CCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCA
* * * *
15504992 ACCTACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
65 ACCCACGAAACGAGCGTGCCGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCG
* * * * *
15505057 GCCGGGT-CCCCTCTGCGTGCTATCGATCTTGCTACCGCAACCGTCGGTCCAGTCCCATGTTAGA
130 ACCGGGTCCCCCTCTGCGTGCTATCGATCCTACTACCGCAACCGTCAGTCCAGTCCCATCTTAGA
*** * ** * *
15505121 CTGGGAATGAACTTTGTATGCCTATGCCAACCGATGAAATGAGAGGGCGGGCAGACGGGCACTAC
195 CTGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAATGAGAGGCCAGGCAGACGGGCACTAC
* *
15505186 GCCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGTGGGTTTAGGAAAAT
260 ACCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAAAAT
*
15505251 CTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAACGGTCCCTTAAGC
325 CTTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGC
* *
15505316 CTTCACGTGAAGTTTCATGGCAAGACTACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTA
390 CTTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTA
* * *
15505381 CGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGCTTTTTGGCCCTACACTTGGTAGACGTGATAC
455 CGGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATAC
* *
15505446 TTGTATTTTTGTTGGCATGCATAAAAACATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
520 TTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGA
*
15505511 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATC
585 CCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATC
*
15505576 TCAAATGCTCTTCAAAGGCGTGTGTGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
650 TCAAATGCTCTTCAAAGGCGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGG
*
15505641 GCCAAGTAT-CAGCACACATTGCACATCATGTGCGCACAC-CCCCCAGCCCCCCCGATCA-CTGG
715 GCCAAGT-TCCAGCACACATCGCACATCATGTGCGCACACACCCCC-GCCCCCCCGATCATC-GG
* * * * *
15505703 AACCCCAATGTCGCCGATTAGGTTCTCTGGCGATGCTCCGGCGATTGTGCCCCGACGAAGAAAAA
777 AACCCCAATGCCACCGATCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAA
* * * *
15505768 TGCGACACCAGCACATGCTCGAGCCTAGCATG
842 TACGACACCAGCACATACCCGAGCCCAGCATG
*
15505800 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCATATGC
1 TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGC
15505856 TTAGACTGGG
Statistics
Matches: 824, Mismatches: 97, Indels: 14
0.88 0.10 0.01
Matches are distributed among these distances:
871 8 0.01
872 724 0.88
873 92 0.11
ACGTcount: A:0.25, C:0.24, G:0.25, T:0.27
Consensus pattern (873 bp):
TGCTGCCGCAACCCTCGGTCTGGTCTGATCTTAGACTGGGAATGAACTCCGTATGCCTAACTCAA
CCCACGAAACGAGCGTGCCGGCGCTCAACCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
CCGGGTCCCCCTCTGCGTGCTATCGATCCTACTACCGCAACCGTCAGTCCAGTCCCATCTTAGAC
TGGGAATGAACTCCATATGCCTAAGCCAACCGACAAAATGAGAGGCCAGGCAGACGGGCACTACA
CCAGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAGGAAAATC
TTCATATTTCTATATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAACGGTCCCTTAAGCC
TTCACATGAAGTTTCATGGCAAGACGACTCATTTTCTATTTTTCATGATTTTCGAAACTTTTTAC
GGTTCGGGATTTTTTAAAATTTTTTCAGAAGGATTTTTGGCCCCAAACTTGGTAGACGTGATACT
TGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGAC
CATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAACAAACCTGTAAAATCT
CAAATGCTCTTCAAAGGCGTGTGAGTTCTCAAGGTTTGATGAGGGATAGGGGGCCAATATAAGGG
CCAAGTTCCAGCACACATCGCACATCATGTGCGCACACACCCCCGCCCCCCCGATCATCGGAACC
CCAATGCCACCGATCAGGTTCTCTGACGATGCTCCGGCGATGGTGCCCCGACGAAGAAAAATACG
ACACCAGCACATACCCGAGCCCAGCATG
Found at i:15505865 original size:26 final size:26
Alignment explanation
Indices: 15505829--15505881 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15505819 CTGGTCTGAT
15505829 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
*
15505855 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCATATG
15505881 C
1 C
15505882 CTAAGCCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15506601 original size:26 final size:26
Alignment explanation
Indices: 15506572--15506627 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15506562 CCGGTCTGAT
* *
15506572 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTAGGAATGAACTCCATATG
15506598 CTTAGACTAGGAATGAACTCCATATG
1 CTTAGACTAGGAATGAACTCCATATG
15506624 CTTA
1 CTTA
15506628 CGTCAACCCA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTAGGAATGAACTCCATATG
Found at i:15507512 original size:26 final size:26
Alignment explanation
Indices: 15507476--15507531 Score: 112
Period size: 26 Copynumber: 2.2 Consensus size: 26
15507466 CCGGTCCGAT
15507476 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15507502 CTTAGACTGGGAATGAACTCCATATG
1 CTTAGACTGGGAATGAACTCCATATG
15507528 CTTA
1 CTTA
15507532 AGTCAACCAA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.30, C:0.20, G:0.21, T:0.29
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCATATG
Found at i:15507726 original size:904 final size:903
Alignment explanation
Indices: 15505855--15510464 Score: 6306
Period size: 904 Copynumber: 5.1 Consensus size: 903
15505845 ACTCCATATG
* * * * * *
15505855 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACAAAACGAACGGGTGGGCGGGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCAGG
* * * *
15505920 CGGGCACTACGCCGGCCAGAGAGACGGGATGTGCATGCCATGGACCGATAGGGTGGTA-G-GGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15505983 TTAGGCACATCTTCATATTTCTT-TGTGCCAATGCCATTTTTATGGCATGTAAATTCATGCAATG
131 TTAGGCACATCTTCATATTT-TTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
*
15506047 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTT
195 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTC
* * * * * **
15506112 GAAACTTTTTATGGTTCGGGATTTTTCAAATTTTTTTCAGAAGGAGTTTTGGAACCAAACTTGGT
260 AAAACTTTTTGT-GTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGT
* *
15506177 AGACATGATCCTTATATTTTTGTTGGCATGCACAAAAAATTTCAGCTAAAAACTCGAAGTGTACA
324 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
15506242 AGATTTTGTGACCATTTGAAAAAGGTGTCCCCATTTAAGACACTTTAATGGCTACTAGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
15506307 CCTGTAAAATCTCAAATGCTCTTTCAGGGGGTGTGAGTTCTCGAGGTTTGGTGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
* * ** * * *
15506372 CCAATATAAGGGCCAAGTACCAGCACCCAGCACACATCATGTGCAAACAACCCCCCCGGTCGCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCCCAGCCCCCC
* * * * * *
15506437 CGATCGTCGGAA-CCCAATGCCACCGATCAGGTTCTCTGACGATGCTCCGACGTTGGTGCCCCGA
583 CGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * *
15506501 CAAAGAAAAATGCGGCACCAGCACATGCCAGAGCCCAGCATGTGCTGCCGCAACCCTCGGTCCGG
648 CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGG
* * * * *
15506566 TCTGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTAGGAATGAACTCCATATGCTTACGT
713 TCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGT
*
15506631 CAACCCATGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
778 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGAT
* * * * * *
15506696 CGATCGGGTCCCCCTCTGCATGCTGCCAATCTTGCCGCCGCAACACTCGGTCTGATCCAAT
843 CGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCTGATCCGAT
* * *
15506757 CTTAGACTGGGAATGAACTCCATATGGCTAAGCTAACCGACGAAACGAGCAGGCGGACGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCAGG
* * *
15506822 CGGGCACTACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTCGATCGATAGGGTGGTATGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
15506887 TTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* **
15506952 TCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATAATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
15507017 AAACTTTTTGTAGTTCGGGATTTTTTAAAATTTTTTCAGAAGGA-TTTTCAGCCCCAAACTTGGT
261 AAACTTTTTGT-GTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTT-AGCCCCAAACTTGGT
* * *
15507081 AGACATGATCGTTGTATTTTTGTTTGCATGCACAAAAAAATTCAGCTAAAAACTCAAAGTGTACA
324 AGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACA
* * *
15507146 AGTTTTTGTGACCATTTGAAAAAAGTGTCCCTATTTCAGACACTTTAAGGGCTACTGGCAGCAAA
389 AGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAA
* *
15507211 CCTGTAAAATCTCAAATGCTCTTTAAAGGGGTATGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
454 CCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGG
*
15507276 CCAATATAAGGGCCAAGTACCAGCACACATCGCACATCATGTGCGCACACCCCTCCCAGCCCCCC
519 CCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCAGCCCCCC
* * *
15507341 CGATCGCCAGAACCCCAATGTCGCCGGTCAGGTTCTCCGATGATGCTCCGGCGATGGTGCCCC-A
583 CGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGA
* * * *
15507405 GCGAAGAAAAATGTGG-ACCAGCACATGCCCGAGCCGAGCATGGGCTACCTCAACCCTCGGTCCG
648 -CGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCG
*
15507469 GTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCATATGCTTAAG
712 GTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAG
* * *
15507534 TCAACCAATGAAACGAGCGTGCGGGTGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
777 TCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGA
* * * ** * * *
15507599 TCGATCGGGTCCCCCTCTGCATGCTGCCAATCTTGCCACTGCAACACTCGGTCTGATCTGAT
842 TCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCTGATCCGAT
* *
15507661 CTTAGACTGGGAATGAACTCCGTATGGCTAAGCTAACCGACGAAACGAGCAGGCGGACGGGCAGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCAGG
* *
15507726 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTCGATCGATAGGGTGGTATGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
15507791 TTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * **
15507856 TCCCTTAAGCCTTCACGTGAAGTTTAATGGCAAGACGACTCGTTTTCTATTTTTAATGATTTTTG
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* *
15507921 AAACTTTTTACG-GTTTGGGATTTTTTAAAATTCTTTT-GGAAGGAGTTTTAGCCCCAAACTTGG
261 AAACTTTTT--GTGTTCGGGATTTTTTAAAATT-TTTTCAGAAGGAGTTTTAGCCCCAAACTTGG
* *
15507984 TAGACCTGATCCTTGTATTTTT-TCTGGCATGCACAAAAAAATTCAGCTAAAAAATCGAAGTGTA
323 TAGACATGATCCTTGTATTTTTGT-TGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTA
* * *
15508048 CAAGTTTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAGGGCTACTGGTAGCA
387 CAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCA
*
15508113 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGCG
452 AACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGG
* *
15508178 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCGCACTCCCCCC-GGCCC
517 GGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCCCCCAGCCCC
* * * ** * *
15508242 CCCGATCGTCGGAACCCCAATGTCGCTGGTTAGGTTCTCCGGTGATGCT-CAAGCGATGGTGCCT
581 CCCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGA-CGATGGTGCCC
* **
15508306 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTACTGTCGCAACCCTCGGTC
645 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTC
** * *
15508371 CGGTCCGATCTTAGACTGGGAATGAACTCGGTAAGCTTAGACTGGGAATGAACTCCGTATGCCTA
710 CGGTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTA
* * * ** * *
15508436 AGTCAACCCACGAAACGAGCGTACGGGCGATC-GGCGGACCAGAGGGGTGGGATGCGTAAGCTGG
775 AGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGG-CCAGAGGGGCAGGATGCGCAAGCCGG
* * * * ** * * * *
15508500 GGATCGGCCGGGTCCCTCTATGTGTGCTGCTGATCCTACTGCCGCAACCCTCGGTCTGGTCTGAA
839 GGATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCTGATCCGAT
* * * * *
15508565 ATTAGACTAGGAATGAACTCCATATGCCTAAGCCAACCGAC-AAA--A-CAAGC--A--GGCGGG
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCAGG
* * *
15508622 CGGGCACTACGCCGGCCAGAGAAATGGGATGCGCAAGTCGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* *
15508687 TTAGGCACATCTTTATATTTTTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * * * *
15508752 TCCTTTAAGCCTTCACGTGAAGATTCATGGTAAGACGACTTGTTTTCCATTTTTCACGATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * * *
15508817 AAACTTTTTGCTGGTCGGGATTTTTTAAAATTTTCTCGGAAGGAGTTTTAGCCTCAAACTTGGTA
261 AAACTTTTTG-TGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTA
* * **
15508882 GACGTGATCCTTGTATTTTTGTTAGCATGCATGAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
325 GACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAA
15508947 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
390 GATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAAC
* *
15509012 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGAGGGATAGAGGGC
455 CTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGC
* **
15509077 CAAAATAAGGGCCAAGTACCAGCACCCATCATACATCATGTGCGCACACCCCTCCCAGCCCCCCC
520 CAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC-CCCAGCCCCCCC
*
15509142 GATCGCCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
584 GATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGAC
* * * * * * * *
15509207 GAAGAAAAATACGGCACCAGCACATGCTCGAGCCCAGCATATGCTACCGGAACACTCAGTCTGAT
649 GAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGT
* *
15509272 CCGATCTCT-GACTGGGAATGAACTCCATATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGT
714 CCGATCT-TAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGT
* * * * *
15509336 CGACCCACGAAATGAGCATGCGGGCGCTCAGTCGGCCATAGGGG-TGCGATGCGCAAGCCGGGGA
778 CAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAG-GATGCGCAAGCCGGGGA
* * * * ** * * * *
15509400 TCGACTGGGTCCCCTTCTACGTGCTACTGATCCTGCTGCCACAACCCTCGATCCGATCCAAT
842 TCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCTGATCCGAT
* * * * * * * * *
15509462 GTTAGATTGGGAATGAACTCTGTATGCCTAAGCCAACTGATGAAATGATCA----GATGGGCAGC
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCAGG
* * *
15509523 CGGGCACTACGCCAGCCAGAGAGACAGGATGCGCAAGCAGTGGATCGATAGGGTGGTAGGTGGGT
66 CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
* * ** *
15509588 TTAGACACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTTTAAATTCATACAATGG
131 TTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
* * *
15509653 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGAATCATTTTTTATTTTTCACGATTTTCA
196 TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
* * * * *
15509718 AAACTTTTTGCTGTTCGAGATTTTTTAAAATTTTTTC-GAAAGAAGTTTT-GGCCCAAAATTGGA
261 AAACTTTTTG-TGTTCGGGATTTTTTAAAATTTTTTCAG-AAGGAGTTTTAGCCCCAAACTTGGT
* * *
15509781 AGACGTGATCCTTGTATTTTTGTTGG-AGTGTACAAAAAAATTCAGCCAAAAACTCGAAGTGTAC
324 AGACATGATCCTTGTATTTTTGTTGGCA-TGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTAC
* * *
15509845 AAGGTTTTGTGACCATTTGAAAAAAATGTCCCCATTTCAGACACTTTAATGGCTGCTGGCAGCAA
388 AAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAA
* * * *
15509910 ACCTGTAAAATCTCAAATTCTCTTTAAGGGGGTGTTATTTCTCGAGGATTGATGAGGGATAGGGG
453 ACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGG
* * * *
15509975 GCCAATTTAAGGGCCAAGTACCAGCACCCATCGCACATCACGTGTGCACACCCCCCGCGGCCCCC
518 GCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-CAGCCCCC
* *
15510040 CCGATCGCCGGAACCCCAATGTCGTCGGTCAGG---T-------T-CTCCGACGATGGTACCCCG
582 CCGATCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCG
* * * * ** *
15510094 ATGAAGAAAAATGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCTGCAACCCTTAGTCCA
647 ACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCG
* *
15510159 GTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAAATCCGTAT-CTCTAA
712 GTCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCT-TAA
* ** * * *
15510223 GTCAACCCACGAAACGAGCGTACGGGCGCT-AACCGGCCAGAGGGGCGGGATGCGTAAGCCGAGG
776 GTCAACCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGG
* * * * * *
15510287 ATCGGCCGGTTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCAGTC-CAGTTCGAT
841 ATCGACCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCTGA-TCCGAT
* *
15510350 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGC-GTGTGGGCGGGC-G
1 CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAG-GCGGACGGGCAG
* *
15510413 GACGGGCACTACGTCGGCCAGAGAGACGGGATGGGCAAGCCGTGGATCGATA
65 G-CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATA
15510465 TGCCTAAGTC
Statistics
Matches: 3305, Mismatches: 356, Indels: 104
0.88 0.09 0.03
Matches are distributed among these distances:
887 1 0.00
888 117 0.04
889 153 0.05
890 1 0.00
891 1 0.00
892 50 0.02
894 1 0.00
895 6 0.00
896 469 0.14
897 302 0.09
898 11 0.00
899 4 0.00
900 280 0.08
901 226 0.07
902 109 0.03
903 93 0.03
904 1413 0.43
905 67 0.02
906 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (903 bp):
CTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCAGGCGGACGGGCAGG
CGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGT
TTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGG
TCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGATTTTCA
AAACTTTTTGTGTTCGGGATTTTTTAAAATTTTTTCAGAAGGAGTTTTAGCCCCAAACTTGGTAG
ACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAG
ATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACC
TGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCC
AATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCCAGCCCCCCCGA
TCGCCGGAACCCCAATGTCGCCGGTCAGGTTCTCCGACGATGCTCCGACGATGGTGCCCCGACGA
AGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTACCGCAACCCTCGGTCCGGTCC
GATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCCGTATGCTTAAGTCAA
CCCACGAAACGAGCGTGCGGGCGCTCAGTCGGCCAGAGGGGCAGGATGCGCAAGCCGGGGATCGA
CCGGGTCCCCCTCTGCGTGCTGCCAATCCTGCTGCCGCAACCCTCGGTCTGATCCGAT
Found at i:15510560 original size:26 final size:26
Alignment explanation
Indices: 15510521--15510573 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15510511 CCAGTCCAAT
* *
15510521 CTTAGACTGGGAATGAGCTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15510547 CTTAGACTGAGAATGAACTCCGTATG
1 CTTAGACTGAGAATGAACTCCGTATG
15510573 C
1 C
15510574 CTAAGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGAGAATGAACTCCGTATG
Found at i:15510795 original size:356 final size:355
Alignment explanation
Indices: 15510143--15510815 Score: 1008
Period size: 356 Copynumber: 1.9 Consensus size: 355
15510133 CATGTGCTGC
* *
15510143 TGCAACCCTTAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGA
1 TGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGA
*
15510208 AATCCGTATCTCTAAGTCAACCCACGAAACGAGCGTACGGGCGCTAACCGGCCAGAGGGGCGGGA
66 AATCCGTATCTCTAAGTCAACCCACGAAACGAGCATACGGGCGCTAACCGGCCAGAGGGGCGGGA
* * * * *
15510273 TGCGTAAGCCGAGGATCGGCCGGTTCCCCCTCTGCGTGCTGCCAATCCTGCTACCGCAACCCTCA
131 CGCGTAAACCGAGGATCGACCGGTTCCCCCTCTACGTGCTACCAATCCTGCTACCGCAACCCTCA
* *
15510338 GTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGTG
196 GTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGG
* * * *
15510403 TGGGCGGGCGGACGGGCACTACGTCGGCCAGAGAGACGGGATGGGCAAGCCGTGGATCGATATGC
261 CGGACGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGC
15510468 CTAAGTCAACCCACGAAATGAGCGTGCGGG
326 CTAAGTCAACCCACGAAATGAGCGTGCGGG
* * *
15510498 TGCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACTGAGAATGA
1 TGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGA
* * * * *
15510563 ACTCCGTATGC-CTAAGTCAACCCACGAAACTAGCATGCGGGTGCTCAACCGGCCAGAGGGGTGG
66 AATCCGTAT-CTCTAAGTCAACCCACGAAACGAGCATACGGGCGCT-AACCGGCCAGAGGGGCGG
* * * * * *
15510627 GACGCGTAAATCGAGGATCGATCGGTTCCCCCTCTACGTGCTACCGATCCTGCTATCGTAGCCCT
129 GACGCGTAAACCGAGGATCGACCGGTTCCCCCTCTACGTGCTACCAATCCTGCTACCGCAACCCT
* * *
15510692 CAGTCCAG-TCTGATCTTAGACTGGGAATGAACTTCGTACGCCTAAGCCAATCGACGAAATGAGC
194 CAGTCCAGTTC-GATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGC
* *
15510756 GGGCGGACGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
258 GGGCGGACGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGAT
15510816 TGATTGGGTG
Statistics
Matches: 282, Mismatches: 33, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
355 100 0.35
356 182 0.65
ACGTcount: A:0.24, C:0.28, G:0.30, T:0.18
Consensus pattern (355 bp):
TGCAACCCTCAGTCCAGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGAGAATGA
AATCCGTATCTCTAAGTCAACCCACGAAACGAGCATACGGGCGCTAACCGGCCAGAGGGGCGGGA
CGCGTAAACCGAGGATCGACCGGTTCCCCCTCTACGTGCTACCAATCCTGCTACCGCAACCCTCA
GTCCAGTTCGATCTTAGACTGGGAATGAACTCCGTACGCCTAAGCCAACCGACGAAACGAGCGGG
CGGACGGGCGGACGGGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGC
CTAAGTCAACCCACGAAATGAGCGTGCGGG
Found at i:15511442 original size:26 final size:26
Alignment explanation
Indices: 15511413--15511465 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15511403 CTGATCCGAT
15511413 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15511439 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15511465 C
1 C
15511466 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15512333 original size:26 final size:26
Alignment explanation
Indices: 15512304--15512356 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15512294 CTGGTCTAAT
*
15512304 CTTAGACTGGAAATGAACTCTGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
* *
15512330 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGAAATGAACTCCGTATG
15512356 C
1 C
15512357 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGAAATGAACTCCGTATG
Found at i:15513703 original size:883 final size:884
Alignment explanation
Indices: 15510500--15514995 Score: 5458
Period size: 891 Copynumber: 5.0 Consensus size: 884
15510490 CGTGCGGGTG
* *
15510500 CAACCCTCGGTCC-AGTCCAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACTGAGAATGAA
1 CAACCCTCGGTCCGA-TCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
15510564 CTCCGTATGCCTAAGTCAACCCACGAAACTAGCATGCGGGTGCTCAACCGGCCAGAGGGGTGGGA
65 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGA
* * * * * * ** * *
15510629 CGCGTAAATCGAGGA-TCGATCGGTTCCCCCTCTACGTGCTACCGATCCTGCTATCGTAGCCCTC
130 TGCGTAAACCAAGGATTCG-CCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTC
* * * *
15510693 AGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTACGCCTAAGCCAATCGACGAAATGAGCGG
194 GGTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACG-AA--A-CGA
* *
15510758 GCGGACGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATTGG
255 GCGGACGGGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGA-TAG
*
15510823 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAA
319 GTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAA
* * *
15510888 ATTCATAGAATGGTCCCTTAAGCCTTCAC-----G-----T--CAAGATGACTCGTTTTATATTT
384 ATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTT
* * * * *
15510941 TTCACAATTTTCAAAACTTTTTGCGATTCAGGATTTTTTACAATTTTTTCGGAAGGGGTTTTGGC
449 TTCACGATTTTCGAAACTTTTTACGATTCAGGATTTTTTA-AATTTTTTCGGAAGGAGTTTTGAC
* * **
15511006 CCCAAACTTGGTAGACATGATCCTTGTATTTTAGTTGGCATGCACAAAAAAATTCAGCTAAAAAC
513 CCCAAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* * * *
15511071 TCGAAGTGTACAATATTTTGTGACCATTTGAAAAAATTATCCCCATTTTAGACACTTTAATGGCT
578 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
15511136 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGATGTGAGTTCTCGAGGTTTGATG
643 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * *
15511201 AGGGATAGGGGGCCGATATAAGGGCCAAGGACCAGCACCCATTGCACATCATGTGCGCACACCCC
708 AGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
*
15511266 CTCGGCCCCCCCGATCGTCGGAACCCCAATGCAGCCGGTCAGGTTCTCTGGCGATGCTCCGGCGA
773 C-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTC---CGA--------CGA
* * * * * * * *
15511331 TAGGGCCCCGGCAAACAAAAATGTGGCACCAGCACATGCTCTAGCCCAGCATGTGCTGCCG
826 T--GGTCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
* * *
15511392 CAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
1 CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* ***
15511457 TCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGCCG-GTTGAGGGGTGGGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGAT
*** * * *
15511521 --G--AA-GTTGGGTATCGGCCGGGTCCCCCTTTGCGTGCTACCGATCCTGCTGCCTCAACCCTC
131 GCGTAAACCAAGGAT-TC-GCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTC
** * * **
15511581 GGTCC-GATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTGACCGACGAAACGAGCG
194 GGTCCAG-TCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCG
* **
15511645 G-TGTAC--G-G-GCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGTGTG
258 GACGGGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAG-GTG
* * *
15511705 GTAGGTGGGTTTAGGCACATGTTCATATTTCTTCATGCCAATGCCAATTTTATGGCTTGTAAATT
322 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* *
15511770 CATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTC
387 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTC
* * * * *
15511835 ACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTTAATTTTTTCGAAAGGATTTTTGACCCC
452 ACGATTTTCGAAACTTTTTACGATTCAGGA-TTTTTTAAATTTTTTCGGAAGGAGTTTTGACCCC
* * *
15511900 AAACTTAATAGACGTGACCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAACTCG
516 AAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
*
15511965 AAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
581 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * * *
15512030 GGTAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGGAGTATGAGTTCTCGTGGTTTGATGAGG
646 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
15512095 GATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCCC
711 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCCC
* *
15512160 GGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGCAATACTCCGGCGATGG
775 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCC-G----A------CGATGG
* * * ** * *
15512225 TGCCCCGACAAAGAAAAATGCGGCACCAGGAAATGCCATAGCCTAGCATGTGATGCCA
829 T--CCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
* * * * * * *
15512283 CAACCCTCGATCTGGTCTAATCTTAGACTGGAAATGAACTCTGTATGCTTAGATTGGGAATGAAC
1 CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * *
15512348 TCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGTCGCTCAGCCGGCCAGAGGGGCGGGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGAT
** * ** ** * * * * * * *
15512413 GCACAAACC-AGGAATCGGGTGGGTCCATCTCTGCATGCTGCCGATCCTGTTGCTGTAACGCTCA
131 GCGTAAACCAAGGATTC-GCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCG
** * * * * * * * * *
15512477 ACCCAATCTGATCCTCGACTGGGAATGAACTCCATATGCCTAAGGCAACTGACGAAATGAGCGGG
195 GTCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGA
* * *
15512542 CGGGCGGGCAAGCACTATGTCGGCCAGAGAGACGGGAT-CTGCAAGCCGTGGATCGATAGGGTGG
260 CGGGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGC-GCAAGCCGTGGATTGATA-GGTGG
* ** *
15512606 TAGGTGGGTTTAGGCACATCTTCATATCTCTGCATTTCAAGGCCATTTTTATGGCTTGTAAATTC
323 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTC
* * *
15512671 ATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTTTCA
388 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
* * * * *
15512736 CGATTTTCAAAACTTTTTGC-AGTTCGGGATTTTTAAAATTTCTTT-GGAAGGCA-TTTTGGCCC
453 CGATTTTCGAAACTTTTTACGA-TTCAGGATTTTTTAAATTT-TTTCGGAAGG-AGTTTTGACCC
*
15512798 CAAACTTGCTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
515 CAAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
* *
15512863 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCTAC
580 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* *
15512928 TGGCAGGAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
645 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
* * *
15512993 GGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-TCTCACCCCCC
710 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC
* * *
15513057 GGCCCCCCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACGATGGT-CCGACGATG
775 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTCCCGACGAAG
* *
15513121 AAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCCA
840 AAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
* * * *
15513166 AAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAAC
1 CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
* * * * *
15513231 TCTGTATGCCTAAGTCAACCCCCGAAACAAGCGAGCGGGCGCTCAGCCGACCAGAGGGGCGGGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGAT
* * * ** * * * * *
15513296 GCGTAAGCCAAGGATTAGCCGGGTTCTTCTCTGTGAGCTATCGATCCTGCTACCGCAACCCTTGG
131 GCGTAAACCAAGGATTCGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGG
* * *
15513361 TCTAGTTTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCAAACCGACGAAACGAGCGGAC
196 TCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC
* * * * * **
15513426 GGGCGGGTGAGAACTACGCCGGCTAGAGAGACGGGATGTGCAAGCCGTGGAGCGATAGGTGGTAG
261 GGGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGTGGTAG
*
15513491 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGTAAATTCATA
326 GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
* *
15513556 CAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTCACGA
391 CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
* ** *
15513621 TTTTGGAAACTTTTTACGATTTGGGATTTTTTAAAGTTTTTTCGGAAGGAGTTTTCACCCCAAAC
456 TTTTCGAAACTTTTTACGATTCAGGATTTTTTAAA-TTTTTTCGGAAGGAGTTTTGACCCCAAAC
* * * *
15513686 TTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCGAAGT
520 TTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGT
** * * *
15513751 GTACAAGATTTCATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTCTCATGGCTACTGGTA
585 GTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCA
* **
15513816 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCCTGGTTTGATGAGGGATA
650 GCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATA
* *
15513881 GGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCGGCCC
715 GGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCC
* * *
15513946 CCCCGATCGTCAGAACCCCAATACCGCCGGTTAGGTTCTCCGACGATGCTCTGACAATAGTGCCC
780 CCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGA-----TG------GT--CC
* * * * *
15514011 CGACGAAGAAAAATGTGGCACCAGCACATTCCCGAGCCCAGCATGTGCCGTCG
832 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
* * * * * *
15514064 CAACCCTCGGTCCGGTCCAATTTTAGATTGGGAATAAACTTCGTATGCTTAGACTGGCAATGAAC
1 CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
*
15514129 TCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGAT
66 TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGAT
* * * * *
15514194 GCG-AAATCTAGGGA-TCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCTCAACTCTC
131 GCGTAAA-CCAAGGATTCG-CCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTC
** * * *
15514257 GGTCTGGT-TCGATCTTAGACTGGGAATGAAC-TCTGTATGCCTAACCCAATCAACGAAACGAGC
194 GGTCCAGTCT-GATCTTAGACTGGGAATGAACTTC-GTATGCCTAAGCCAACCGACGAAACGAGC
* *
15514320 GGATGGGTAGGCGGGCGAGCACCATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATA
257 GGA--CG--GGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATA
* **
15514385 GGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGT
318 -GGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGT
* *
15514450 AAATTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTAT
382 AAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTAT
* * *
15514515 TTTTCACGATTTTTGAAACTTTTTACGGTTCAGGATTTCTTAAAATTTTTTC-GATAGGAGTTTT
447 TTTTCACGATTTTCGAAACTTTTTACGATTCAGGATTT-TTTAAATTTTTTCGGA-AGGAGTTTT
* *
15514579 GACCCCAAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGGTAAA
510 GACCCCAAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
** *
15514644 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTTCCATTTCAGACATTTTAATG
575 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
15514709 GCAACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTG
640 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* *
15514774 ATGAGGGATA-GGGGCCAATATAAGGGCCAAGTACCACCACCCATCGCACTTCATGTGCGCAC-C
705 ATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * * * **
15514837 ACCCCCGGCCCCCCCGATCGCCTGAACCCCTATGCCGCTGGTCAGGTTCTCCGGTGATGGTGCCC
770 -CCCCCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGT--CC
** * * * ** * * * * * *
15514902 CGGTGAAGAAAAATACGGCACCGGCACAAGTTCAAGGCTAGAATGTGCTGTCG
832 CGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
*
15514955 CAACCCTCTGTCCGGA--CAGATCTTAGACTGGGAATGAACTC
1 CAACCCTCGGTCC-GATCCA-ATCTTAGACTGGGAATGAACTC
15514996 TGTGTGCCTA
Statistics
Matches: 3110, Mismatches: 415, Indels: 159
0.84 0.11 0.04
Matches are distributed among these distances:
878 2 0.00
879 134 0.04
880 1 0.00
881 1 0.00
882 161 0.05
883 543 0.17
884 69 0.02
885 1 0.00
886 9 0.00
887 5 0.00
888 83 0.03
889 7 0.00
890 2 0.00
891 593 0.19
892 124 0.04
893 2 0.00
895 88 0.03
896 7 0.00
897 55 0.02
898 264 0.08
899 256 0.08
900 193 0.06
901 2 0.00
902 146 0.05
903 357 0.11
904 5 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (884 bp):
CAACCCTCGGTCCGATCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAAC
TCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGAT
GCGTAAACCAAGGATTCGCCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCGCAACCCTCGG
TCCAGTCTGATCTTAGACTGGGAATGAACTTCGTATGCCTAAGCCAACCGACGAAACGAGCGGAC
GGGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGTGGTAG
GTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATA
CAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACGA
TTTTCGAAACTTTTTACGATTCAGGATTTTTTAAATTTTTTCGGAAGGAGTTTTGACCCCAAACT
TGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAGTG
TACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAG
CAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGATAG
GGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCC
CCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGGTCCCGACGAAGAAAAAT
GCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCA
Found at i:15514129 original size:26 final size:26
Alignment explanation
Indices: 15514086--15514137 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
15514076 CGGTCCAATT
* * *
15514086 TTAGATTGGGAATAAACTTCGTATGC
1 TTAGACTGGCAATAAACTCCGTATGC
*
15514112 TTAGACTGGCAATGAACTCCGTATGC
1 TTAGACTGGCAATAAACTCCGTATGC
15514138 CTAAGTCAAC
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (26 bp):
TTAGACTGGCAATAAACTCCGTATGC
Found at i:15514612 original size:903 final size:898
Alignment explanation
Indices: 15510499--15514889 Score: 5650
Period size: 883 Copynumber: 4.9 Consensus size: 898
15510489 GCGTGCGGGT
* * *
15510499 GCAACCCTCGGTCCAGTCCAATCTTAGACTGGGAATGAGCTCCGTATGCTTAGACTGAGAATGAA
1 GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
15510564 CTCCGTATGCCTAAGTCAACCCACGAAACTAGCATGCGGGTGCTCAACCGGCCAGAGGGGTGGGA
66 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGA
* * * * * * * *
15510629 CGCGTAAATCGA-GGATCGATCGGTTCCCCCTCTACGTGCTACCGATCCTGCTATCGT-AGCCCT
131 TGCG-AAATCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCT-GCCTCAACCCT
* * * *
15510692 CAGTCCAG-TCTGATCTTAGACTGGGAATGAACT-TCGTACGCCTAAGCCAATCGACGAAATGAG
194 CGGTCCAGTTC-GATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAG
*
15510755 CGGGCGGACGGGCGGGCGGGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGAT
257 C--G-GG-CGGGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGAT
*
15510820 TGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTG
318 AGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTG
* * *
15510885 TAAATTCATAGAATGGTCCCTTAAGCCTTCAC-----G--T-----CAAGATGACTCGTTTTATA
383 TAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTA
* * * * * *
15510938 TTTTTCACAATTTTCAAAACTTTTTGCGATTCAGGATTTTTTACAATTTTTTCGGAAGGGGTTTT
448 TTTTTCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-GAAGGAGTTTT
* * * **
15511003 GGCCCCAAACTTGGTAGACATGATCCTTGTATTTTAGTTGGCATGCACAAAAAAATTCAGCTAAA
512 GACCCCAAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAA
* * * *
15511068 AACTCGAAGTGTACAATATTTTGTGACCATTTGAAAAAATTATCCCCATTTTAGACACTTTAATG
577 AACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATG
* *
15511133 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGATGTGAGTTCTCGAGGTTTG
642 GCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTG
* * * *
15511198 ATGAGGGATAGGGGGCCGATATAAGGGCCAAGGACCAGCACCCATTGCACATCATGTGCGCACAC
707 ATGAGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC
* * *
15511263 CCCCTCGGCCCCCCCGATCGTCGGAACCCCAATGCAGCCGGTCAGGTTCTCTGGCGATGCTCCGG
772 CCCC-CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGG
* * * * * *
15511328 CGATAGGGCCCCGGCAAACAAAAATGTGGCACCAGCACATGCTCTAGCCCAGCATGTGCTGCC
836 CGATAGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * *
15511391 GCAACCCTCGATCTGATCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
1 GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* ***
15511456 CTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGCCG-GTTGAGGGGTGGGA
66 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGA
* * * *
15511520 T--GAAGT--TGGGTATCGGCCGGGTCCCCCTTTGCGTGCTACCGATCCTGCTGCCTCAACCCTC
131 TGCGAAATCCAGGG-ATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCTCAACCCTC
* * * * **
15511581 GGTCC-GATCCAATCTTAGACTAGGAATGAACTCCGTATGCCTAAGCTGACCGACGAAACGAGC-
195 GGTCCAG-TTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCG
* ** *
15511644 GGTGTAC--G-G-GCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGTGTG
259 GGCGGGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTG
* *
15511705 GTAGGTGGGTTTAGGCACATGTTCATATTTCTT-CATGCCAATGCCAATTTTATGGCTTGTAAAT
324 GTAGGTGGGTTTAGGCACATCTTCATATTT-TTGCATGCCAATGCCATTTTTATGGCTTGTAAAT
*
15511769 TCATACAATGGTCCCTTAAGCCTTCACATGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTT
388 TCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTT
* ** *
15511834 CACGATTTTTGAAACTTTTTACGGTTCAGGATTTTTTTTAATTTTTTCGAAAGGATTTTTGACCC
453 CACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCG-AAGGAGTTTTGACCC
* * *
15511899 CAAACTTAATAGACGTGACCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGGTAAAAACTC
517 CAAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTC
*
15511964 GAAGTGTACAAGATTTTATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
582 GAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTAC
* * * * *
15512029 TGGTAGCAAACCTGTAAAATCTCAAATGATCTTTAAGGGAGTATGAGTTCTCGTGGTTTGATGAG
647 TGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAG
15512094 GGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCACCC
712 GGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACC-CCC
* * * * * *
15512159 CGGCCCCCCCGATCGCCGGAACCCCAATGCTGCCGGTCAGGTTCTCCGGCAATACTCCGGCGATG
776 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATA
* * ** * *
15512224 GTGCCCCGACAAAGAAAAATGCGGCACCAGGAAATGCCATAGCCTAGCATGTGATGCC
841 GTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * * * *
15512282 ACAACCCTCGATCTGGTCTAATCTTAGACTGGAAATGAACTCTGTATGCTTAGATTGGGAATGAA
1 GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * *
15512347 CTCCGTATGCCTAAGTCAACCTACGAAACGAGCGTGCGGTCGCTCAGCCGGCCAGAGGGGCGGGA
66 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGA
* * *** ** * * * * *
15512412 TGC-ACAAACCAGGAATCGGGTGGGTCCATCTCTGCATGCTGCCGATCCTGTTG-CTGTAACGCT
131 TGCGA-AATCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCT-CAACCCT
*** * * * ** * * *
15512475 CAACCCA-ATCTGATCCTCGACTGGGAATGAACTCCATATGCCTAAGGCAACTGACGAAATGAGC
194 CGGTCCAGTTC-GATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGC
* * *
15512539 GGGCGGGCGGGCAAGCACTATGTCGGCCAGAGAGACGGGAT-CTGCAAGCCGTGGATCGATAGGG
258 GGGCGGGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGC-GCAAGCCGTGGATTGATAGGG
* * ** *
15512603 TGGTAGGTGGGTTTAGGCACATCTTCATATCTCTGCATTTCAAGGCCATTTTTATGGCTTGTAAA
322 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAA
* * * *
15512668 TTCATACAATGGTCCCTTAAGCCTTCATGTGAAGTTTCATGGCAAGACGACTCATTTTTTATTTT
387 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTT
* * * * * *
15512733 TCACGATTTTCAAAACTTTTTGCAGTTCGGGA-TTTTTAAAATTTCTTTGGAAGGCA-TTTTGGC
452 TCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTT-TTTCGAAGG-AGTTTTGAC
*
15512796 CCCAAACTTGCTAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
515 CCCAAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAAC
* *
15512861 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTTAAACACTTTAATGGCT
580 TCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCT
* *
15512926 ACTGGCAGGAAACCTGTAAAATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
645 ACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATG
* * * *
15512991 AGGGATAGGGGGCTAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTG-TCTCACCCC
710 AGGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCC
* *
15513055 CCGGCCCCCCCGATCGTCGGAACCCCAATACCGTCGGTCAGGTTCTCCGACGA---T-----G--
775 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGAT
* * * *
15513110 -GT---CCGACGATGAAAAATGCGACACCAGCACATGCCCGAGCCTAGCATGTGCTGCC
840 AGTGCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
** * * * *
15513165 AAAACCCTCGGTCCGATCCGATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATCAA
1 GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
* * * * *
15513230 CTCTGTATGCCTAAGTCAACCCCCGAAACAAGCGAGCGGGCGCTCAGCCGACCAGAGGGGCGGGA
66 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGA
* * * * * ** * * * * * *
15513295 TGCGTAAGCCAAGGAT-TAGCCGGGTTCTTCTCTGTGAGCTATCGATCCTGCTACCGCAACCCTT
131 TGCGAAATCCAGGGATCGA-CCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCTCAACCCTC
* * *
15513359 GGTCTAGTTTGATCTTAGACTGGGAATGAACT-TCGTATGCCTAAGCAAACCGACGAAACGAGCG
195 GGTCCAGTTCGATCTTAGACTGGGAATGAACTCT-GTATGCCTAAGCCAACCGACGAAACGAGCG
* * * * * * **
15513423 GACGGGCGGGTGAGAACTACGCCGGCTAGAGAGACGGGATGTGCAAGCCGTGGAGCGATA-GGTG
259 GGCGGGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTG
* *
15513487 GTAGGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCTTTTTTATGGCTTGTAAATT
324 GTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATT
* * *
15513552 CATACAATGGTCACTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCCTTTTCTATTTTTC
389 CATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTC
* * ** * *
15513617 ACGATTTTGGAAACTTTTTACGATTTGGGATTTTTTAAAGTTTTTTCGGAAGGAGTTTTCACCCC
454 ACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTC-GAAGGAGTTTTGACCCC
* * * *
15513682 AAACTTGGTAGACATGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCCAAAAACTCG
518 AAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCG
** * *
15513747 AAGTGTACAAGATTTCATGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTCTCATGGCTACT
583 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * **
15513812 GGTAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTATGAGTTCTCCTGGTTTGATGAGG
648 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
*
15513877 GATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACACCCCCCG
713 GATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * * *
15513942 GCCCCCCCGATCGTCAGAACCCCAATACCGCCGGTTAGGTTCTCCGACGATGCTCTGACAATAGT
778 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATAGT
* * * * *
15514007 GCCCCGACGAAGAAAAATGTGGCACCAGCACATTCCCGAGCCCAGCATGTGCCGTC
843 GCCCCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
* * * * *
15514063 GCAACCCTCGGTCCGGTCCAATTTTAGATTGGGAATAAACTTCGTATGCTTAGACTGGCAATGAA
1 GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
*
15514128 CTCCGTATGCCTAAGTCAACCCACGGAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGA
66 CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGA
* * *
15514193 TGCGAAATCTAGGGATCGACCGGGTCCCCCTCTGCGTGCTGCCGATCCTGCTGCCTCAACTCTCG
131 TGCGAAATCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCTCAACCCTCG
** * * *
15514258 GTCTGGTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAACCCAATCAACGAAACGAGCGGA
196 GTCCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGG-
* *
15514323 TGGGTAGGCGGGCGAGCACCATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGG
260 -GCG--GGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGG
**
15514388 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGTGTGCCAATGCCATTTTTATGGCTTGTAAA
322 TGGTAGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAA
*
15514453 TTCATACAATGGTCCCTTAAGCCCTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTT
387 TTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTT
* *
15514518 TCACGATTTTTGAAACTTTTTACGGTTCAGGATTTCTTAAAATTTTTTCGATAGGAGTTTTGACC
452 TCACGATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGA-AGGAGTTTTGACC
* *
15514583 CCAAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCATAAAAAAATTCAGGTAAAAACT
516 CCAAACTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACT
** * *
15514648 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTTTCCATTTCAGACATTTTAATGGCAA
581 CGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTA
*
15514713 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCAAGGTTTGATGA
646 CTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGA
* *
15514778 GGGATAGG-GGCCAATATAAGGGCCAAGTACCACCACCCATCGCACTTCATGTGCGCAC-CACCC
711 GGGATAGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACAC-CCC
* * * *
15514841 CCGGCCCCCCCGATCGCCTGAACCCCTATGCCGCTGGTCAGGTTCTCCG
775 CCGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCG
15514890 GTGATGGTGC
Statistics
Matches: 3025, Mismatches: 402, Indels: 134
0.85 0.11 0.04
Matches are distributed among these distances:
879 135 0.04
880 3 0.00
881 1 0.00
882 153 0.05
883 547 0.18
884 62 0.02
886 3 0.00
887 6 0.00
888 90 0.03
889 3 0.00
890 1 0.00
891 531 0.18
892 117 0.04
893 1 0.00
894 5 0.00
895 84 0.03
896 6 0.00
897 49 0.02
898 268 0.09
899 258 0.09
900 194 0.06
901 1 0.00
902 143 0.05
903 364 0.12
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (898 bp):
GCAACCCTCGGTCCGGTCCAATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAA
CTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGCGCTCAGCCGACCAGAGGGGTGGGA
TGCGAAATCCAGGGATCGACCGGGTCCCCCTCTGCGTGCTACCGATCCTGCTGCCTCAACCCTCG
GTCCAGTTCGATCTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGGG
CGGGCGGGCGAGCACTATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGT
AGGTGGGTTTAGGCACATCTTCATATTTTTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCA
TACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCACGGCAAGACGACTCGTTTTCTATTTTTCAC
GATTTTCGAAACTTTTTACGGTTCAGGATTTTTTAAAATTTTTTCGAAGGAGTTTTGACCCCAAA
CTTGATAGACGTGATCCTTGTATTTTTTTTGGCATGCACAAAAAAATTCAGCTAAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGGGAT
AGGAGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCC
CCCCCGATCGTCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGATGCTCCGGCGATAGTGCC
CCGACAAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCC
Found at i:15516612 original size:24 final size:24
Alignment explanation
Indices: 15516580--15516650 Score: 133
Period size: 24 Copynumber: 3.0 Consensus size: 24
15516570 ACCATTTGAT
15516580 GGCTACTGGCAGCAAACCTGTAAC
1 GGCTACTGGCAGCAAACCTGTAAC
15516604 GGCTACTGGCAGCAAACCTGTAAC
1 GGCTACTGGCAGCAAACCTGTAAC
*
15516628 GGCTACTGGCAGCAAACTTGTAA
1 GGCTACTGGCAGCAAACCTGTAA
15516651 AATCTCAAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.30, C:0.27, G:0.25, T:0.18
Consensus pattern (24 bp):
GGCTACTGGCAGCAAACCTGTAAC
Found at i:15517632 original size:26 final size:26
Alignment explanation
Indices: 15517603--15517652 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15517593 GGTCCGATCA
15517603 TAGACTGGGAATGAACTCCGTATGCT
1 TAGACTGGGAATGAACTCCGTATGCT
15517629 TAGACTGGGAATGAACTCCGTATG
1 TAGACTGGGAATGAACTCCGTATG
15517653 TCTAAGTCAA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (26 bp):
TAGACTGGGAATGAACTCCGTATGCT
Found at i:15519277 original size:733 final size:727
Alignment explanation
Indices: 15517770--15519581 Score: 2096
Period size: 733 Copynumber: 2.5 Consensus size: 727
15517760 TGCCGTAACC
* * * *
15517770 CTCGGTCTGGTCTGATCTTAGACTGGGAATAAACTCTGTATGCCTAAGCCAATCGATGAAACAAG
1 CTCGGTCTCGTCTGA-CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAA-AA-
* * *
15517835 CGGGCGGAAGGGCGGGCCGGGGCACTACGCCGACCAGA-AGACGGGATGCGCAAGCTGTGGATCG
63 -GAGCGG-A---CGGG-C-GGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCG
* * *
15517899 ATAAGGTGGTA-GTGGGTTTAGGTACATCTTTCATATTTCTGCATGCCAATGCCATTTTTATGGC
120 ATAGGGTGGTAGGTGGGTTTAGGCACATC-TTCATATTTCTGCGTGCCAATGCCATTTTTATGGC
* *
15517963 TTGTAAATTCATACAATGGTCCCTTAATCCTTCACGTGAAGTTTCATGGCAAGACGACTCATTTT
184 TTGTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTT
* * * * *
15518028 CTATTTTTCATAATTTTTGAAACTTTTTACAGTTTGGGATTTTTTAAAACTTTTTGGAAA-CAG-
249 CTATTTTTCACAATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGT
* * * *
15518091 TTTGTCCCCAAACTTGGTAGACGTGATATTTGTATTTTGGTTGGCATGCCATAAAAAAATTCAGC
314 TTTGCCCCCAAACTTGGTAGACGTGATACTTCTATTTTGGTTGGCATGCCACAAAAAAATTCAGC
15518156 TAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
379 TAAAACTCGAAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTA
* * * * *
15518221 TTGGCTACTGGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGTGTGTGAGTTCTTGAGGT
444 ATGGCTACTGGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTATGAGTTCTCGAGGT
* * * ** * *
15518286 TTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGCACCAGCACCCATCGTACATCGTGTATGCA
509 TTGATGAGCGATAAGGGGCCAATAGAAGGGCCAAGCACCAGCACCCATCACACATCATGTACGCA
* * *
15518351 CACCCCCCCGGCCCCCTGATCGCCGGAACCCCAATCCGTATGCCTAAGTCAACCCACGAAATGAG
574 CACCCCCCAGGCCCCATGATCGCCAGAACCCCAATCCGTATGCCTAAGTCAACCCACG-AATGAG
* * * * * * * * * * * * *
15518416 CGTACGGGTGCTCAGCCGACCAGAGAGGCGGGATGCACATGTTGGGATCGGTCGGGTTCCCCTTC
638 CGTACGGGTGCCCAGACGAACAAAAAGGCGGCAAGCACATGCTGCGA-C-GCCGAG-TCACCTGC
* ** * * *
15518481 TACGTGCTGCCGATCCTGCTGCCACAACG
700 TACGTACCCCCGATCCGGATG-CACAACA
* * * *
15518510 CTCGGTCTGGTCTGATCTTAGACTAGGTATGAACTCTGTATGCCTAAGCCAACCGACG-AAATGA
1 CTCGGTCTCGTCTGA-CTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAAAGA
* * * *
15518574 GCGGACGGGCGGGCACTACGCAGGCCAGAGAGACGGGATACGCAAGCCATTGATTGATAGGGTGG
65 GCGGACGGGCGGGCACTACGC-GGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGG
** * *
15518639 TAGGTGGGTTTAGGCACATCTTCATATTTCTATGTGCAAATCCCATTTTTATGGCTTGTAAATTC
129 TAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTC
* * * * *
15518704 AAACAATGGTCCCTTAAGCCTTCCCGGGAAGTTTCAAGGCAAGACGACTCGTTTTTTATTTTTCA
194 ATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCA
** * *
15518769 CAATTTTTGAAACTTTTTGCAGTTCAGGATTTTTTATAATTTTTTCGAAAGGAGTTTTGGCCCCA
259 CAATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCA
* **
15518834 AACTTGGTGGACGTGATACTTCTATTTTTTTTGGCATG-CACAAAAAAATTCAGCTAAAAACTCG
324 AACTTGGTAGACGTGATACTTCTATTTTGGTTGGCATGCCACAAAAAAATTCAGCT-AAAACTCG
15518898 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
388 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
15518963 GGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGC
453 GGCAGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGC
* *
15519028 GATAAGGGGCCAATAGAAGGGCCAAGTACCAGCACCCATCACACATCATGTGCGCACA-CCCCCA
518 GATAAGGGGCCAATAGAAGGGCCAAGCACCAGCACCCATCACACATCATGTACGCACACCCCCCA
* * * * * * ** **
15519092 GGCCCCAT-ATTGCCAGAACCCTAATGCCG-CTGTC-AGGTTC-TCTGACG-ATGCTTCG-ACGA
583 GGCCCCATGATCGCCAGAACCCCAAT-CCGTATGCCTAAG-TCAACCCACGAATG-AGCGTACG-
* * * * * **
15519151 TGGTGCCCCGAGGAAGAAAAATGTGGCACCAGCACATGCT-CGA-GCCGAG-CATGTGCTACCGT
644 -GGTGCCCAGACGAACAAAAAGGCGGCA--AGCACATGCTGCGACGCCGAGTCACCTGCTA-CGT
*
15519213 AACCCCCGATCCGGTATG-ATCTTACA
705 -ACCCCCGATCCGG-ATGCA-C-AACA
* * * *
15519239 CTGGGAATGAACTTCGTCTG-CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAA
1 CTCGG--T---C-TCGTCTGACTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAA
*
15519303 ACAAGAGTGCGGGCGGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
60 A-AAGA--GCGGACGGGCGGGCACTACG-CGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGA
* *
15519368 TGGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTTCCAATGCCATTTTTATGGCTT
121 TAGGGTGGTAGGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTT
* * * *
15519433 GTAAATTCATACAGTGGTACCTTAAGCCTTCATGTTAAGTTTCATGGCAAGACGACTCGTTTTCT
186 GTAAATTCATACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCT
*
15519498 ATTTTTCACAATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGGAAGGA-TTT
251 ATTTTTCACAATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTT
*
15519562 TTCCCCCAAAACTTGGTAGA
316 TGCCCCC-AAACTTGGTAGA
15519582 AGTGTACAAG
Statistics
Matches: 911, Mismatches: 131, Indels: 63
0.82 0.12 0.06
Matches are distributed among these distances:
726 5 0.01
727 4 0.00
728 20 0.02
729 11 0.01
730 38 0.04
731 195 0.21
732 61 0.07
733 261 0.29
734 3 0.00
735 10 0.01
736 13 0.01
737 233 0.26
738 2 0.00
739 2 0.00
740 53 0.06
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (727 bp):
CTCGGTCTCGTCTGACTTAGACTGGGAATGAACTCTGTATGCCTAAGCCAACCGACGAAAAAGAG
CGGACGGGCGGGCACTACGCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
GGTGGGTTTAGGCACATCTTCATATTTCTGCGTGCCAATGCCATTTTTATGGCTTGTAAATTCAT
ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCACA
ATTTTTGAAACTTTTTGCAGTTTGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTGCCCCCAAA
CTTGGTAGACGTGATACTTCTATTTTGGTTGGCATGCCACAAAAAAATTCAGCTAAAACTCGAAG
TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGC
AGCAAACCTGTAAAATCTCAAAAGCTCTTTAAGGGGGTATGAGTTCTCGAGGTTTGATGAGCGAT
AAGGGGCCAATAGAAGGGCCAAGCACCAGCACCCATCACACATCATGTACGCACACCCCCCAGGC
CCCATGATCGCCAGAACCCCAATCCGTATGCCTAAGTCAACCCACGAATGAGCGTACGGGTGCCC
AGACGAACAAAAAGGCGGCAAGCACATGCTGCGACGCCGAGTCACCTGCTACGTACCCCCGATCC
GGATGCACAACA
Found at i:15519954 original size:26 final size:26
Alignment explanation
Indices: 15519918--15519970 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15519908 CCAGTTCGAT
15519918 CTTAGACTGGGAATGAACTACGTATG
1 CTTAGACTGGGAATGAACTACGTATG
* *
15519944 CTTAGACTGGGAATGAGCTTCGTATG
1 CTTAGACTGGGAATGAACTACGTATG
15519970 C
1 C
15519971 CTATGTCAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.17, G:0.28, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTACGTATG
Found at i:15520849 original size:26 final size:26
Alignment explanation
Indices: 15520813--15520865 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15520803 CCATTCCGAT
* *
15520813 CTTAGATTGGGAAAGAACTTCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
15520839 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
15520865 C
1 C
15520866 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:15521320 original size:904 final size:896
Alignment explanation
Indices: 15519581--15523636 Score: 5413
Period size: 899 Copynumber: 4.5 Consensus size: 896
15519571 AACTTGGTAG
* *
15519581 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCTCCAATTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
15519646 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAAG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * *
15519711 GATAGGAGGCCACTATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTACGTACACCCCCCG
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
* * * * *
15519776 GCCCCCCTGATCGTTGGAACCCCAATGCCACCGATCAGGTTCTCCGATGATGCTCCGGCGAT-GT
196 GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCT-CTGCGATGGT
* * * *
15519840 GCCCC-AGCGAAGAAAAATGCGGCACCAGCACATAG-CTGAGCCTAGCATGTGCTGTCGTAACCC
260 GCCCCGA-CGAAGAAAAATGCGGCACCAGCACAT-GCCCGAGCCCAGCATGTGCTGCCGCAACCC
* * * * *
15519903 CCAGTCCAGTT-CGATCTTAGACTGGGAATGAACTACGTATGCTTAGACTGGGAATGAGCTTCGT
323 TCGGTCCAGTTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGT
* * * * * **
15519967 ATGCCTATGTCAACCCACGAAACGAGTGCGC-GGATGCTCAGCCGGCCAGAGGGGCAGGATGCAC
388 ATGCCTAAGTCAACCCACGAAACGAGCGTGCAGG-CGCTCAGCCGGCCAGAGGGGCGGGATGCGT
* *
15520031 AAGCC-GAGGATCGATTGGGTCCCCCTCTGTGTGCTGCCGATCCTGCTACCACAACCCTCAGTCT
452 AAGCCAG-GGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCACAACCCTCAGTCT
* * *
15520095 GGTCTAATCTTAGACTGGGAATGAACTCCGTATGCCTAAGCAAACTGACGAAACA-TGCGGGCGG
516 GGTCTAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAAACAGGGCGGGCGG
* *
15520159 GC-GGCACTACGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATAGATAGGGTGGTAGGTGGG
581 GCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGG
**
15520223 TTTAGGCACATCTTCATATTTCTATGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
646 TTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATG
* *
15520288 GCCCCTTAAGCCTTCACGTGAAGTTGCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
711 GTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTT
* * * * *
15520353 TAATCTTTTTACGGTTTGAGATATTTTAAAATTTTTTTGGAAGGAGGTTTGGCCCCAAACTTGGT
776 GAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGT
* *
15520418 AGACGTGATCCTTGTATTTTTGTTGGCATGCATAAAAAAATTCAGCTACAAACTCA
841 AGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
* *
15520474 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAATGTCCTCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
15520539 GGCAGCAAACCTGTAATATCTCAAATGATCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGGGG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * * * * *
15520604 GATGGGGGGCCAATATAAGAGCCAAGTAGCAGCACCCATCGCACATCATGTGTGTAGACCCCCCG
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-
* * * * *
15520669 GGCCCCCCCGATCGTCGGAACCCTAATGCCGTCGGTCAGGTTCTCCGATGATGCTGTTGCGATGG
195 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCT-CTGCGATGG
** * *
15520734 TGCCCCGACGAAGAAAAATATGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGTCGCAACTCT
259 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * *
15520799 CGGTCCA-TTCCGATCTTAGATTGGGAAAGAACTTCGTATGCTTAGACTGGGAATGAACTCCGTA
324 CGGTCCAGTTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * **
15520863 TGCCTAAGTCAACCCACGAAAAGAGCGTGCAGGCGCTCAGTCGATCAGAGGGGCGGGATGCGTAA
389 TGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAA
* * * ** *
15520928 GCCAGGGATC-AGTCGGGTCCCCTTCTGTATGCTATCGATCCTGCTACCACAACCCTTGGTCTGA
454 GCCAGGGATCGA-TCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGG
* * * *
15520992 TCTGATCTTAGACTAGGAATGAACTCTGTATACCTATGCCAACTGACCGAACAACCAGGTAAGCG
518 TCTAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGA-CG-A-AA-CAGG---GCG
* * * ** *
15521057 GGCTGACGGGCACTACACTGGCCTA-AGAGGTGGGATGCGCAAGCCTTGGATCGATAGGGTGGTA
576 GGCGGGCGGGCACTACACCGGCC-AGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTA
* **
15521121 GGTGGGTTTAGGCACATCTTCATATTTCTGCATGCCAATAACATTTTTATGGCTTGTAAATTCAT
640 GGTGGGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCAT
* * * * *
15521186 ACATTGGTCCCTTAAGCTTTCACATGAAGTTTCATGTCAAGACGACTCGTTTTCTCTTTTTCATG
705 ACAATGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATG
* * **
15521251 ATTTTTTAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGACTTTTGGCCCTGAA
770 ATTTTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAA
* * * **
15521316 CTTGGTAGACGTGATCCTTCTATTTTTTTTGGTATGCACAAAAAAATTCAGCTAAAAACTTG
835 CTTGGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
* * *
15521378 AAGTGTACAAGATTTTGTGACCGTTTGAAAAAAGTGTCCCCATTTCAGACTCATTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * * *
15521443 GGTAACAAACCTGTAAAATCTCAAATGCTCTTTAAAGGGGTGTCAGTTC-CTGAGGTTTGATGAG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTC-GAGGTTTGATGAG
* * * *
15521507 GGATAGGGGGCTAATATAAGGGCCTAGTACCAGCACCCATCACACATCATGTGCGCACTCCCACC
130 GGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCC-CC
* * *
15521572 CGGCCCCCCCGATCATCGGAACCCCAATACCGCCGATCAGGTGCT-C--CGA-------CGATGG
194 CGGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCTGCGATGG
* * * *
15521627 TGCCCCGACGAAGAAAACTGTGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGAAAGCCT
259 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
** *
15521692 TAGTCCAGTT-CGATCTTATACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
324 CGGTCCAGTTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* ** ** *
15521756 TGCCTAAGTCAACCCACGAAAAGAGCGTGTGGGCGCTCAGCCATCCAGAGGGTCGGGATGCGTAA
389 TGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAA
* * * * ** ** * *
15521821 GACAAGGATCGACCGGGTCCCCCTCTGTGTCCTGTCGATCCTGCTGTCGCAACCCTCAGTCCGGT
454 GCCAGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGGT
* *
15521886 CTAATCTTAGACTGGGAATAAAGTCCGTA-AGCCTAAGCC-ACATGACGAAACGAACGGGCGGGC
519 CTAATCTTAGACTGGGAATGAACTCCGTATA-CCTAAGCCAAC-TGACGAAAC--A-GGGCGGGC
** * **
15521949 GGGCGGGCACTACGTCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATTGATAGGGTGGTAGGAA
579 GGGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTG
* *
15522014 GATTTAGGCACATCTTCATATTTCTACGTGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
644 GGTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAA
*
15522079 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACAACT-GATTTTCTATTTTTCATGATT
709 TGGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCG-TTTTCTATTTTTCATGATT
15522143 TTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
773 TTTGAAACTTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTT
*
15522208 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAACAAATTCAGCTAAAAACTCA
838 GGTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
* * *
15522267 AAGTGTGCAAGATTTTGTCACCATTTGAAGAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
*
15522332 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTTGAGGTTTGATGAGG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
15522397 GATAGGGAGCCAATATAAGGGCCAAGTACCAGAAACCATCGCACAT-ATGTGCGCACACCCCCCA
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCC-
* * *
15522461 GGCCCCCCCGATCATCGGAACCCCAATGCCGCCGGTCAGGTTCTCCGACGGTGCTCTGACGATGG
195 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCTG-CGATGG
* * * * * ** *
15522526 TGCCCAGGCAAAGAAAAATGCAGCACCAGCACCTGCGTGAGCCCAGCATGTGCTGCTGCAACCCT
259 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * * *
15522591 CGAT-CAGGTCCAATCTTAGACTGGGAATGAACTCCATATGCTTAGACTGGGAATGAACTCTGTA
324 CGGTCCAGTTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * * * * * *
15522655 TGCCTAAATCAACCCTCGAAACGAGCGTGCAGACGCTTAGCCGGCCAAAGGCGCGGGATGCTTAA
389 TGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAA
* * * *
15522720 GCCAGGGATC-AGCTGGGTCCCCCTCTGCGTGCTACCGATCCTACTGCCACAACCCTCAGTCTGG
454 GCCAGGGATCGATC-GGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGG
** * * *
15522784 TCCGATATTAGACTGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCG
518 TCTAATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAAAC-A--GGGCGGGCG
* *
15522849 GGCGAGCACTACACCGGCCAGAGAGACGGGATGCACAAG-CGTGGATCGATAGGGTGGTAGGTGG
580 GGCGGGCACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGG
*
15522913 GTTTAGGCACATCTTCATATTTCTGCATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
645 GTTTAGGCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAAT
* *
15522978 GGTCCCTTAAGCCTTGACGTGAAGTTTCATGGCAAGACGACTCGTTTTTTATTTTTCATGATTTT
710 GGTCCCTTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTT
* * * * *
15523043 TGAAACTTTTTGCGG-TTCAGGATTTTTGAAAATTTTTTCAGAAGGAGTTTTGGCCTCAAACTTG
775 TGAAACTTTTTACGGTTTGA-GATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTG
* * * * * * *
15523107 GTAGACTTGATCCCTGTATTTTTATTGGCATGTAAAAAAAAATTCAACTAAAAACTCG
839 GTAGACGTGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
* *
15523165 AAGTGTACAAGATTTTGTGATCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTATT
1 AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
* * *
15523230 GCCAGCAAACCTGTAAAATGTCAAATGCTCTTTAAGGGGATGTGAGTTCTCGAGGTTTGATGAGG
66 GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
* * *
15523295 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATCGCACATTATGTGCGAACAACCCCCC
131 GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCAC-ACCCCCC
* * * *
15523360 GGTCCCCCCGATCGTCGGAACCCCAATACCGCCAATCAGGTTCTCCGACGATGCTCCGACGATGG
195 GGCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCTG-CGATGG
* * * * ** * *
15523425 TGCCCCGGCGAAGAAAAATACAGCACCAACACATGATCAAGCCCAGCATGTGCTCCCGCAACCCT
259 TGCCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCT
* * * **
15523490 CGGTCC-GGTCTGATCTTAGACTGGGAATAAACTCTATATGCTTAGACTGGGAATGAACTCCGTA
324 CGGTCCAGTTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTA
* * ***
15523554 TGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGCCGGCCAGAGGGGCGGGATGTACAA
389 TGCCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAA
* *
15523619 GCCGGGGATCGATAGGGT
454 GCCAGGGATCGATCGGGT
15523637 GTGAGTTCTC
Statistics
Matches: 2760, Mismatches: 350, Indels: 100
0.86 0.11 0.03
Matches are distributed among these distances:
887 3 0.00
888 56 0.02
889 448 0.16
890 2 0.00
891 4 0.00
892 7 0.00
893 439 0.16
894 61 0.02
895 253 0.09
896 6 0.00
897 4 0.00
898 421 0.15
899 545 0.20
900 11 0.00
901 2 0.00
903 10 0.00
904 484 0.18
905 4 0.00
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (896 bp):
AAGTGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACT
GGCAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGATGAGG
GATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCG
GCCCCCCCGATCGTCGGAACCCCAATGCCGCCGATCAGGTTCTCCGACGATGCTCTGCGATGGTG
CCCCGACGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCG
GTCCAGTTCCGATCTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATG
CCTAAGTCAACCCACGAAACGAGCGTGCAGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGTAAGC
CAGGGATCGATCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTACCACAACCCTCAGTCTGGTCT
AATCTTAGACTGGGAATGAACTCCGTATACCTAAGCCAACTGACGAAACAGGGCGGGCGGGCGGG
CACTACACCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATAGGGTGGTAGGTGGGTTTAG
GCACATCTTCATATTTCTACATGCCAATGCCATTTTTATGGCTTGTAAATTCATACAATGGTCCC
TTAAGCCTTCACGTGAAGTTTCATGGCAAGACGACTCGTTTTCTATTTTTCATGATTTTTGAAAC
TTTTTACGGTTTGAGATTTTTTAAAATTTTTTCGGAAGGAGTTTTGGCCCCAAACTTGGTAGACG
TGATCCTTGTATTTTTGTTGGCATGCACAAAAAAATTCAGCTAAAAACTCA
Found at i:15521742 original size:26 final size:26
Alignment explanation
Indices: 15521706--15521758 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15521696 CCAGTTCGAT
*
15521706 CTTATACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15521732 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15521758 C
1 C
15521759 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15523555 original size:26 final size:26
Alignment explanation
Indices: 15523504--15523556 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15523494 CCGGTCTGAT
*
15523504 CTTAGACTGGGAATAAACTCTATATG
1 CTTAGACTGGGAATAAACTCCATATG
* *
15523530 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATAAACTCCATATG
15523556 C
1 C
15523557 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.19, G:0.23, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATAAACTCCATATG
Found at i:15523897 original size:26 final size:26
Alignment explanation
Indices: 15523868--15523920 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15523858 CCGGTCTGAT
*
15523868 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15523894 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15523920 C
1 C
15523921 CTAAGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.19, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15523941 original size:364 final size:366
Alignment explanation
Indices: 15523270--15523942 Score: 1073
Period size: 365 Copynumber: 1.8 Consensus size: 366
15523260 TTTAAGGGGA
* *
15523270 TGTGAGTTCTCGAGGTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACTCATC
1 TGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * **
15523335 GCACATTATGTGCGAACAACCCCCCGGTCCCCCCGATCGTCGGAACCCCAATACCGCCAATCAGG
66 GCACATCATGTGCGAACAACCCCCCGATCCCCCCAATCACCGGAACCCCAATACCGCCAATCAGG
* *
15523400 TTCTCCGACGATGCTCCGACGATGGTGCCCCGGCGAAGAAAAATACAGCACCAACACATGATCAA
131 TTCTCCGACGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATACAGCACCAACACATGACCAA
* *
15523465 GCCCAGCATGTGCTCCCGCAACCCTCGGTCCGGTCTGATCTTAGACTGGGAATAAACTCTATATG
196 GCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATAAACTCTATATG
15523530 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
261 CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
15523595 CGGCCAGAGGGGCGGGATGTACAAGCCGGGGATCGATAGGG
326 CGGCCAGAGGGGCGGGATGTACAAGCCGGGGATCGATAGGG
*
15523636 TGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCGGCACCCATC
1 TGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
* * * **
15523701 GCACATCATGTGCGCAC-ACCCCCC-ATCCCCCTCAATCACCGGAACCCTAATGCCGCCGGTCAG
66 GCACATCATGTGCGAACAACCCCCCGATCCCCC-CAATCACCGGAACCCCAATACCGCCAATCAG
* * * * * * *
15523764 GTTCTCCGATGATGCTCCGGCGATGGTGCCCTGGCAAAGAAAAATACGGCACCAGCATATGCCCA
130 GTTCTCCGACGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATACAGCACCAACACATGACCA
* * *
15523829 AGCCCAGCATGTGCTACTGCAA-CCTCGATCCGGTCTGATCTTAGACTGGGAATGAACTCTGTAT
195 AGCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATAAACTCTATAT
15523893 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
260 GCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAG
15523943 TTTTGGCCCA
Statistics
Matches: 279, Mismatches: 27, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
364 95 0.34
365 107 0.38
366 77 0.28
ACGTcount: A:0.26, C:0.29, G:0.26, T:0.19
Consensus pattern (366 bp):
TGTGAGTTCTCGAGCTTTGATGAGGGATAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATC
GCACATCATGTGCGAACAACCCCCCGATCCCCCCAATCACCGGAACCCCAATACCGCCAATCAGG
TTCTCCGACGATGCTCCGACGATGGTGCCCCGGCAAAGAAAAATACAGCACCAACACATGACCAA
GCCCAGCATGTGCTACCGCAACCCTCGATCCGGTCTGATCTTAGACTGGGAATAAACTCTATATG
CTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCCACGAAACGAGCGTGCGGGTGCTCAGC
CGGCCAGAGGGGCGGGATGTACAAGCCGGGGATCGATAGGG
Found at i:15524443 original size:26 final size:26
Alignment explanation
Indices: 15524407--15524459 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
15524397 CCGGTCTGAT
15524407 CTTAGACTGGGAATGAACT-TCGTATG
1 CTTAGACTGGGAATGAACTCT-GTATG
15524433 CTTAGACTGGGAATGAACTCTGTATG
1 CTTAGACTGGGAATGAACTCTGTATG
15524459 C
1 C
15524460 CTAAGTTAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
26 25 0.96
27 1 0.04
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCTGTATG
Found at i:15524880 original size:26 final size:26
Alignment explanation
Indices: 15524844--15524896 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15524834 ACGGTTCGAT
15524844 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15524870 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15524896 C
1 C
15524897 CTAAGTCAAC
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.26
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15525893 original size:26 final size:26
Alignment explanation
Indices: 15525857--15525926 Score: 113
Period size: 26 Copynumber: 2.7 Consensus size: 26
15525847 TTTTCACCCT
*
15525857 GGAATGAACTCCGTATGCTTAGACTA
1 GGAATGAACTCCATATGCTTAGACTA
* *
15525883 GGAATGAACTCCCTATGTTTAGACTA
1 GGAATGAACTCCATATGCTTAGACTA
15525909 GGAATGAACTCCATATGC
1 GGAATGAACTCCATATGC
15525927 CTAAGTCAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.31, C:0.20, G:0.21, T:0.27
Consensus pattern (26 bp):
GGAATGAACTCCATATGCTTAGACTA
Found at i:15526805 original size:26 final size:26
Alignment explanation
Indices: 15526776--15526828 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15526766 CCAGTCCGAT
* *
15526776 CTTAGACTGGGAATGAAGTCTGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15526802 CTTAGATTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
15526828 C
1 C
15526829 CTAAGTCAAC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15527700 original size:26 final size:26
Alignment explanation
Indices: 15527671--15527720 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15527661 CCAGTCCGAT
15527671 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAATGAACTCCGTATG
*
15527697 CTTAGATTGGGAATGAACTCCGTA
1 CTTAGACTGGGAATGAACTCCGTA
15527721 ACCCTAAGTC
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.18, G:0.26, T:0.28
Consensus pattern (26 bp):
CTTAGACTGGGAATGAACTCCGTATG
Found at i:15528559 original size:903 final size:898
Alignment explanation
Indices: 15525874--15528837 Score: 3878
Period size: 903 Copynumber: 3.3 Consensus size: 898
15525864 ACTCCGTATG
* * * * *
15525874 CTTAGACTAGGAATGAACTCCCTATGTTTAGACTAGGAATGAACTCCATATGCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
15525939 ATGAAATGAGCGTGCGGACGCTCAGCCGGCCAGAGGGGCAGGATGAAG-AAGCCAGGGATCGACC
66 ATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATG-CGCAAGCCGGGGATCGACC
* * ** * * * ** *
15526003 GAGTACCCCTCTGCATGCTACCGATTCTGCTGCCGCAACCCTCGGTCCGGTCCAATCTTAGATTG
130 GGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTG
* * *
15526068 GGAATGAACTCCGTATGCCTAAGCCAA-CTATC-AAA--A-AGAGCGGGCGGGCGGGCAGGCACT
195 GGAATGAACTCCGTATGCCTAAGCCAACCGA-CGAAACGAGCGAGCGGGCGGGCGGGCAGGAACT
* * ** *
15526128 ATGCCGGCCAGAGAGACGGGATGCGCAAGCCGTGGATCGATATGGTGGTAAGTGGGTTTAGGCAC
259 ACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATCGGGTGGTAGGTGGGTTTAGGCAC
* * * *
15526193 ATCTTCATATTTTTGCATGCCAATGCGATTTTTATGGCTTGTAAATTCATACAATGGTCCCCTAA
324 ATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAA
* *
15526258 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCATTTTCTATTTTTCACGATTTTCAAAAATTTT
389 GCCTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTT-AAAAACTTT
* ** * **
15526323 TTTCGGTTTTGGATTTTTCAAAATTTTTTC-AGAAGGATTTTTGGAGCCAAACTTGGTAGACGTG
453 TTACGGTTCGGGATTTTTCAAAATTTTTTCGA-AAGGA-TTTTAGCCCCAAACTTGGTAGACGTG
* * *
15526387 ATCCTTGTATTTTTTTTGTCATGCAAAAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
516 ATCCTTGTATTTTTGTTGGCATGC-ACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTT
*
15526452 GTGACCATTTGAAAAAAAGTGTCCCCATTTCAAACACTTTAATGGCTACTGGCAGCAAACCTGTA
580 GTGACCATTTG-AAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTA
* *
15526517 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTCGAGGTTTGTTGAGGGATAGGGGGCCAATA
644 AAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGA-GGATAGGGGGCCAATA
* *
15526582 TAAGGGCCAAGTACCAGCACCCATCTCACATCATGTGCGCACACCCCCCCGGCCCCCCCGATCGT
708 TAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACA-CCCCCCGGCCCCCCCGATCGC
* * * *
15526647 CGAAACCCCAATGTCGCTGTTCAAGTTCTCCGACGATGCTCCGGCGATGGAGCCCCGGGGAAGAA
772 CG-AACCCCAATGCCGCTGATCAAGTTCTCCGGCGATGCTCCGACGATGGA-CCCCGGGGAAGAA
*
15526712 AAATGCGGCACCAGCACATGCTCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCGAT
835 AAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCGAT
* * *
15526776 CTTAGACTGGGAATGAAGTCTGTATGCTTAGATTGGGAATGAACTCCGTATGCCTAAGTCAACGC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAAC-C
* * *
15526841 CAT-AAACGAGCGTAGCGGGCGCTTAGCCGGCCAGAGGGGGTGGGTATGCACAA-CC-GGGATCG
65 CATGAAACGAGCGT-GCGGGCGCTCAGCCGGCCAGA-GGGGCGGG-ATGCGCAAGCCGGGGATCG
**
15526903 GTCGGGTCGCCCC-CTGTGTGCTTACCGATTCCTGCTGCCACAA-CCTCAGTCCGGTCTGATCTT
127 ACCGGGTC-CCCCTCTGTGTGC-TACCGA-TCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTT
* * * * *
15526966 ACACT-GGAATTGAACTACCGTATGCCTAAGCCAACCGATGAAA--TGC-AGCGGACAGG-GGGC
189 AGACTGGGAA-TGAACT-CCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGC
*
15527026 AGGAACTACGCCGGCCAGAGAGACA-GATGCGCAAGCCACTGGA-CGATCGGGTGGTAGGTGGGT
252 AGGAACTACGCCGGCCAGAGAGACAGGATGCGCAAGCC-GTGGATCGATCGGGTGGTAGGTGGGT
* *
15527089 TTA-GCACATCTTCATATTTATGCATGGCCAATGCCATTTTTTATGCCTTG-AAATGCACACAAT
316 TTAGGCACATCTTCATATTTATGCAT-GCCAATGCCA-TTTTTATGGCTTGTAAATGCATACAAT
15527152 GGTCCCTTAAGCCTTTCACG-GAAGTTTCAATGGCAAGATGACTCG-TTTCTATTTTTCACGATT
379 GGTCCCTTAAGCC-TTCACGTGAAGTTTC-ATGGCAAGATGACTCGTTTTCTATTTTTCACGATT
* * * *
15527215 TTCAAAACTTTTTATGG-TCGGGAATTTTTCAAAA-TTTTTGGACAGGATTTTAGCCCCAAAACT
442 TTAAAAACTTTTTACGGTTCGGG-ATTTTTCAAAATTTTTTCGAAAGGATTTTAGCCCC-AAACT
* * * *
15527278 TGGTAGGACTTGATCC-TG---TGTTGTTGGCATGCACAAAAAAAATTCAGGTAAAAAATCGAAG
505 TGGTA-GACGTGATCCTTGTATTTTTGTTGGCATGCAC--AAAAAATTCAGCTAAAAACTCGAAG
* *
15527339 TGTACAATATTTTGTGACCA--TGAAAAAAGTGTCCTCATTTCAGACACTTTAATGGGCTACT-G
567 TGTACAAGATTTTGTGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAAT-GGCTACTGG
* *
15527401 CAGC-AACCTGTAAAATCTCAATTGCTCTTTAAGGGGGTGTAAGTTCTAGAGGTTTGATGACGGA
631 CAGCAAACCTGTAAAATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGA-GGA
* * *
15527465 TAGGGGGCCAATATAAGGGCCAAATACCAGCACCCATCGCACATCGTGTGCGCACACCCCCCAGC
695 TAGGGGGCCAATATAAGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGC
* * * * * **
15527530 CCCCCCGATCGACGGAACCCTAATGCCGCTGGTTAAGTTCTCCGGCGATGCTCCGTCGATGGTTT
760 CCCCCCGATCG-CCGAACCCCAATGCCGCTGATCAAGTTCTCCGGCGATGCTCCGACGATGG-AC
* * * * *
15527595 CCTGGGGAAGAAAAATGCAGCACCAGCACATGCCCGAGCCCAGTATGTGCTACCGCAACCCTCGG
823 CCCGGGGAAGAAAAATGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAG
15527660 TCCAGTCCGAT
888 TCCAGTCCGAT
* **
15527671 CTTAGACTGGGAATGAACTCCGTATGCTTAGATTGGGAATGAACTCCGTAACCCTAAGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * * *
15527736 ATGAAACAAGCGTGCGGGGGGCGTTCAGCCGGCCAGAAGGGTGGGATGCGCAA-TCGGGGATCGA
66 ATGAAACGAGCGTGC---GGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA
* * * * *
15527800 TCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCGCAACCCTCAGTTCGGTATGATCATAGAC
128 CCGGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGAC
* *
15527865 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGGGCGGGCGGGCGGGCGGGAAC
193 TGGGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCAGGAAC
* *
15527930 TACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTTGATCGATCGGGTGGTAGGTGGGTTTAGGTA
258 TACGCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATCGGGTGGTAGGTGGGTTTAGGCA
* * * *
15527995 CAGCTTCATATTTCTGCATGCCAAAGCCATTTTTATGGTTTGTAAATGCATACAATGGTCCCTTA
323 CATCTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTA
* * **
15528060 AGCCTTCAAGTGAAGTTTCATGGC-AGCACGACTCGTTTTCTATTTTTCACGATTTTTGAAACTT
388 AGCCTTCACGTGAAGTTTCATGGCAAG-ATGACTCGTTTTCTATTTTTCACGATTTTAAAAACTT
*
15528124 TTTACGGTTCGGGATTTTTTAAAATTTTTTCGAAAGGAGTTTTAGCCCCAAACTTGGTAGACGTG
452 TTTACGGTTCGGGATTTTTCAAAATTTTTTCGAAAGGA-TTTTAGCCCCAAACTTGGTAGACGTG
* *
15528189 ATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAGCTCAAAGTGTACAAGATTTTG
516 ATCCTTGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTG
*
15528254 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGTAGCAAACCTGTAAA
581 TGACCATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAA
* *
15528319 ATCTCAAATGCTTTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGAGATAGGGGGCCAATACA
646 ATCTCAAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAG-GATAGGGGGCCAATATA
* *
15528384 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGTGCACACCCCCCGGCCCCCCTGATCGCCGA
710 AGGGCCAAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGA
* **
15528449 ACCCCAATGCCG-TCGATCAGGTTCTCCGGCGATGCTCCGACGATGGCACCCCGACGAAGAAAAA
775 ACCCCAATGCCGCT-GATCAAGTTCTCCGGCGATGCTCCGACGATGG-ACCCCGGGGAAGAAAAA
** * * * * *
15528513 TATGGCACCAGCACATGCCCGAGCCTAGCATGTGCTGTCGCAACCCTCAATCCCGTTCGAT
838 TGCGGCACCAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCGAT
* *
15528574 CTTAGACTGGGAAAGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTATGTCAACCC
1 CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
* * * *
15528639 ACGAAACGAGCGTGCAGGCGCTCAGCCAGCCAGAGGGGCGGGATGCGCAAGCCGGAGATC-AGCC
66 ATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGA-CC
* ** * * *
15528703 GGGTCCCCCTCTGTGTGCTATCGATCCTGCTGCCACAACCCTTTGTCCGGTCTGATCTCAGATTA
130 GGGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTG
* * * * *
15528768 GGAAAGAACTCTGTATGCCTAAGCCAACCGACGAAACGAGCGAGCTGGCGGACGGGCAGGCACTA
195 GGAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCAGGAACTA
15528833 CGCCG
260 CGCCG
15528838 NNNNNNNNNN
Statistics
Matches: 1795, Mismatches: 206, Indels: 123
0.85 0.10 0.06
Matches are distributed among these distances:
894 44 0.02
895 243 0.14
896 144 0.08
897 60 0.03
898 69 0.04
899 139 0.08
900 120 0.07
901 183 0.10
902 96 0.05
903 326 0.18
904 261 0.15
905 97 0.05
906 13 0.01
ACGTcount: A:0.26, C:0.25, G:0.25, T:0.24
Consensus pattern (898 bp):
CTTAGACTGGGAATGAACTCCGTATGCTTAGACTGGGAATGAACTCCGTATGCCTAAGTCAACCC
ATGAAACGAGCGTGCGGGCGCTCAGCCGGCCAGAGGGGCGGGATGCGCAAGCCGGGGATCGACCG
GGTCCCCCTCTGTGTGCTACCGATCCTGCTGCCACAACCCTCAGTCCGGTCTGATCTTAGACTGG
GAATGAACTCCGTATGCCTAAGCCAACCGACGAAACGAGCGAGCGGGCGGGCGGGCAGGAACTAC
GCCGGCCAGAGAGACAGGATGCGCAAGCCGTGGATCGATCGGGTGGTAGGTGGGTTTAGGCACAT
CTTCATATTTATGCATGCCAATGCCATTTTTATGGCTTGTAAATGCATACAATGGTCCCTTAAGC
CTTCACGTGAAGTTTCATGGCAAGATGACTCGTTTTCTATTTTTCACGATTTTAAAAACTTTTTA
CGGTTCGGGATTTTTCAAAATTTTTTCGAAAGGATTTTAGCCCCAAACTTGGTAGACGTGATCCT
TGTATTTTTGTTGGCATGCACAAAAAATTCAGCTAAAAACTCGAAGTGTACAAGATTTTGTGACC
ATTTGAAAAAAGTGTCCCCATTTCAGACACTTTAATGGCTACTGGCAGCAAACCTGTAAAATCTC
AAATGCTCTTTAAGGGGGTGTGAGTTCTAGAGGTTTGATGAGGATAGGGGGCCAATATAAGGGCC
AAGTACCAGCACCCATCGCACATCATGTGCGCACACCCCCCGGCCCCCCCGATCGCCGAACCCCA
ATGCCGCTGATCAAGTTCTCCGGCGATGCTCCGACGATGGACCCCGGGGAAGAAAAATGCGGCAC
CAGCACATGCCCGAGCCCAGCATGTGCTGCCGCAACCCTCAGTCCAGTCCGAT
Found at i:15528603 original size:26 final size:26
Alignment explanation
Indices: 15528574--15528626 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15528564 CCCGTTCGAT
15528574 CTTAGACTGGGAAAGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
*
15528600 CTTAGACTGGGAATGAACTCCGTATG
1 CTTAGACTGGGAAAGAACTCCGTATG
15528626 C
1 C
15528627 CTATGTCAAC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (26 bp):
CTTAGACTGGGAAAGAACTCCGTATG
Found at i:15533828 original size:26 final size:26
Alignment explanation
Indices: 15533792--15533842 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15533782 TGACTTAGGC
15533792 ATACGGAGTTCATTCATAGTCTAAGT
1 ATACGGAGTTCATTCATAGTCTAAGT
*
15533818 ATACGGAGTTCATTCGTAGTCTAAG
1 ATACGGAGTTCATTCATAGTCTAAG
15533843 ATCAAACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.16, G:0.22, T:0.33
Consensus pattern (26 bp):
ATACGGAGTTCATTCATAGTCTAAGT
Found at i:15534724 original size:26 final size:26
Alignment explanation
Indices: 15534694--15534746 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15534684 GTTGACATGG
* *
15534694 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
*
15534720 GCATATAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15534746 G
1 G
15534747 ATCAAACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15535534 original size:900 final size:901
Alignment explanation
Indices: 15530239--15547062 Score: 21238
Period size: 900 Copynumber: 18.8 Consensus size: 901
15530229 GTTGACTTAG
* * *
15530239 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15530304 CTCGGGCATGTGCTGTTGCCGCA-TTTT-TTCGTCAGGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * ** *
15530367 ACTTGACTGGCGGCATTGGGTTTCCGGCTTTCGGGGGGCCGGGGGGTGTGCGCACATGATGTGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGCG
* *
15530432 ATGGGTGCTGCTACTTGGCCCTTATATTGGCCCCCTATCCC-CATCAAACCTCAAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* * * * *
15530496 CCCCTTCAAGAGCATTTGAGATTTTACAGGCTTGTTGCCATTAGCCATTAAAGTGTTTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
15530561 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGATTTTT-GCTGATTTTTTTTGT
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG-TTTTTAGCTGAATTTTTTTGT
* ** *
15530625 GCATGCCAACAAAAATACAAGGATCACGTCTACCAGGTTTGGCACCAAAACTCCTTCCAAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
** * * *
15530690 TTTTAAAAAATCTTGAACCGCAAAAAGTTTTAAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* **
15530755 CCCTGAAACTTCTTGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
15530820 TGGCACGCAGAAATATGAAGATGTGCCTAAGCCCACGTACCACCCTATCGATCCACGGCTTGGGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
15530885 ATCCCGTCTCTCTGGCCGACGTAGT------------GCCCGCCCGCTCGTTTCGTCGATTGGCT
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * *
15530938 TAGGCATACGAAATTCATTCCCTGTCTAAGAT-TGCACCAGACCGAGGTTTGTGGCAGCATGATC
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGTGACAGCAGGATC
** * * * *
15531002 GATAGCACACAGAGGGAGACCCAGTCGATCCCCGGCTTGCGCATCCAGCCCCTCTGGCCGGCTGA
778 GGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
15531067 GCGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATACGGGGTTCATTCCCAGTGTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** * *
15531126 CCATACGGAGTTCATTGCTAGTCTAAGATCCGACTGGACCGAGCATTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15531191 -TCCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTTGGGGCACCATCGTCGGAGCATCGTCGGAT
66 CT-CGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * * * *
15531255 AACCTGACCGGTGGCGTTTGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGAACATGATGTGC
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGC
* * * *
15531320 GATGGGTGCTGGTACTTAGG-CCTTACAATGGCCCCCTATCCCTCATCAAACCTCGGGAACTGAC
194 GATGGGTGCTGGTACTT-GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15531384 ACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTTCCAGTAGCCATTAAAGTGTCTGAAA-
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15531448 CGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
15531513 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTATGGGGCCAAAACTCCTTCCTAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * *
15531578 ATTTTAAAAAATCGCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15531643 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAATTGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * * *
15531708 TTGGCCCACAGGAATATGAAGATGTGCCTAAACCCACCTACCACCCTATTGCTCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
** *
15531773 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGACCGCTCGTTTCGTCGGTTGGC
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * * * * ** *
15531838 TTAGGCATACCGAGTTCATTCCCACTCTAAGATCGGACCAGATCGAGGGTTATGGTAGCAGGATA
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATC
** * *
15531903 GGCAGCACACAGAGGGGGACCCGGCCGATCCTTGGCTTGCGCATCGCGCCCCTCTGGCCTGCTGA
778 GGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * * * **
15531968 GTGCCCGCACCCTCGTTTCGTGGGTTGACTTAGGCAGACGGAGTTCATTCTCAGAATAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15532027 GCATACGAAGTTCATTCCCAGTCTAAGATCAGATCGGACCAAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
15532092 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTGTCGGGGCACCATCGCCGGAGCATCGCCAGAGC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C---G--TCG---GAGC
* *
15532157 ATCGTCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCA
120 ATCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGTGTGCGCA
*
15532222 CATAATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
184 CATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCG
* * * *
15532287 AGAACTCACACCCCCTTCAAGAGCATTTGAGAATTTACAGGTTTGCTGCCAATAGCAATTAAAGT
249 AGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGT
* * *
15532352 GTCTTAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGACTTTTTAGCTGA
314 GTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA
* * * ***
15532417 ATTTTTTTGTGCATACCAAAAAAAATACAAGGATCCCGTCTACCAAGTTTGTCCCCAAAACTCCT
379 ATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT
* * * * *
15532482 TCCGAAAAAATTTTAAAAAATCCCGAATCGTAAAAAGTTTTAAAAATCGTGAAAAAAAGAAAACT
444 TCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACG
* * *
15532547 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTACGAATTTACAAGCCATG
509 AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
**
15532612 AAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAAACCCACCTACCACCCTATCGATCC
574 AAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT-AAACCCACCTACCACCCTATCGATCC
* * * *
15532677 ACGGCTTGTGCATCCTGTCTCTCTGGCCGACGTAGTGCCCGACCGCCCGCTGCCCGCCCGCTCAA
638 ACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CC-C-GCCCGCCCGCTC-G
* * ** *
15532742 TTT-GTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGCCTAAGATTGGACCGGACCAAGGGTT
699 TTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT
** * * * * *
15532806 ACGACAGCAGGATCGACAGCACGCAGA-GGGGACCCGACCAATCCCCGACTTGCGCATCCCGCCC
764 GTGACAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCC
* * * * * *
15532870 CTCCGGTCGGCTGAGCACCCGCACGCTTGTTTCGCGGGTTGACTTAGGCATACGAAGTTCATTCC
829 CTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC
15532935 CAGTCTAA
894 CAGTCTAA
* * * * *
15532943 G-AT-C--AG---A-T--C-G-----GAT----------TGAGGGTTCCAGTAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15532982 CTTGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
15533047 ACCTGACCGACGGCATTAGGGTTCCGGTGATTGGGGGGACGGGGGAGGGGGTGTGCGCACATGAT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-C-----CGGGGGTGTGCGCACATGAT
* *
15533112 GTGCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACT
190 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15533177 TACACCCCCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTTA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
15533242 AATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * * * * *
15533307 TTATGCATGCCAAAAAAAATACAAGGATCACGTCTACAAAGCTTGGTGG-CAAAATTCCTTTCAA
385 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGG-GGCCAAAACTCCTTCCGA
* * * *
15533371 AAAAATTTAAAAAAATCCCGAACCGTAAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCA
449 AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
15533436 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * * *
15533501 GGCATTGCCATGCAGAAATGTGAAGATGTGACTAAACCCACCTACCACCCTGTCGATCCACGACT
579 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * *
15533566 TGCGCATCCCGTCTCTCTGGCCGATGTAGT--------GCCCGCCTGCCAGCTCGTTTCGTCGGT
644 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
** * * * ** *
15533623 TGGCTTAGGCATGTGGAGTTCATTCCTAGTCTAAGATCAGAACGGACCAAGGGTTGCAATAGCAG
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAG
* * * * * * ** *
15533688 GATCGACAGCACATAGAGTGGGACCCGGTCGATCCCCGACTTGCTCATCCTACCCCTCTGGCTGG
774 GATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * **
15533753 TTGAGCGCCCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCATAGTCTAA
839 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** ** * * *
15533816 GTATACGGAGTTCATTCGTAGTCTAAGATCAAACTGGATCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15533881 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCATCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
*
15533946 ACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGAGGGCCGAGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGG-GGGCC---GGGGGTGTGCGCACATGATGT
* * * *
15534011 GCAATGGGTGCTCGTACTTGGCCCTTATATAGGCCCCCTATCCCTCATCAAACCTCGAGAACACA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15534076 CACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGTAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15534141 TGGGGACACTTTTTTCAAATGGTCACAAAAT-TTGTACACTTTGAGTTTTTGGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * * *
15534205 ATGCATGCCAACAAGAAA-ACAAGGGTCACGTCTAGCAAGTTTGGGGCCAAAACGCCTTCCAAAA
387 GTGCATGCCAACAA-AAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
*
15534269 AAATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15534334 TTGCAATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15534399 CATTGGCGTGCAGAAAATATGAAAATGTGCCTAAACCCACCTACCACCTTATTGATCCACGGCTT
581 CATTGGCATGCAG-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * * *
15534464 GCGCATCCCGTCTCTATGGTCGGCGTAGTGCCCTCCCGCCCGCCCGTCCACTCGTTTCGTCGATT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * * * * * * * *
15534529 GGCTTAGGCATACAGAATTCATTCCCAGTATAAGATCGGATCAGATCGAGGGTTCTAATAGTAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGG
* * * * * * * * *
15534594 ATCGGCAGCAC-CTA-TGGGGGACCCGGTCGATACTCGGCTTGCGCCTCTCGCCCATCTGGTCGA
775 ATCGGCAGCACAC-AGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * *
15534657 CTGAGCGCCCGCACGCTCGTTTCATAGGTTGACATGGGCATACGGAGTTCATTCCCAGTCTAA
839 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * **
15534720 GCATATAGAGTTCATTCCCAATCTAAGATCAAACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * **
15534785 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGCCAGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
15534850 ACCTGACCGGTGGCATTGGGGTTCTGGCGATCGGGGGGCC-GGGG-GTGCGCACATGATGTGCGA
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGA
* *
15534913 TGGGTGCTGGTACTTGGCCCATATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATC
196 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
* *
15534978 CCCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCCAGTAGCCACTAAAGTGTCTGAAATGGG
261 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * * *
15535043 GACATTTTTTTCAAATGGCCACAAAATCTTGTGCACTTTGAGTTTTTAGTTGAATGTTTTTTGTG
326 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTTGTG
* * * *
15535108 CATGCCAAGAAAAATACAAGGGTCACGTCTACCAAGTTTGGGGCCAAAATTCCTTTCGAAAAAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* * * * *
15535173 TTTAAAAAATCCCGAACCACAAAAACTTTCGAAAATCATGAAAAATAGAAAAAGAGTCGTCTTGC
455 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
15535238 GATGAAACTTCACGTGAAGGCTTAGGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * *
15535303 GGCATGCAGAAATATGAAGATGTGCCTAAACCCATCTACCACCCTATCGATCCACGGGTTGCTCA
585 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * * * * * *
15535368 -CCTCGTATCTCTGGCCGACGTAGTTCCCGCCTGCTCGCCCACCCGCTCGTTTCCTTGGTTGGCT
650 TCC-CGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * *
15535432 TATGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGTGACAGCAGGATTG
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCG
** * * **
15535497 GCAGCACGTAGAGGGGGACCTGGCCGATTCCCGGCTTGCGCATCTTGCCCCTCTGGCCGGCTGAG
779 GCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
15535562 TGCCCGCACGCTCGTTTCGTGGGATGACTTAGGCATACCGAGTTCATTCCCAATCTAA
844 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
** * ** * *
15535620 GCATACGGAGTTCATTCGTAGTCTAAGATCGAACATGATCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15535685 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCGCCAGGACACCATCATCGGAGCATCG-CTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAG
* * * * *
15535749 AACCTGACCGGTGG-ATTAGGGTTACGGCGATCGTGGGTGCCGGAGGGGGTGTGCGCACATGATC
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCG-GGGGGCC---GGGGGTGTGCGCACATGATG
* *
15535813 TGCGATGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15535878 ACACCCCCTTGAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* * * * *
15535943 ACGGGGACACTTTTTTCAAATAGTCACAAAATCTCGTACACTTCGTGTTTTTTGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * * *
15536008 TGTGCATGTCAACTAAAATTCCAGGATCACGTCTACCAAGTTTCGGACCAAAACTCCTTCCAAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * *
15536073 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATGGTGAAAAATAGAAAACCAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15536138 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATATATAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * * *
15536203 CATTGGCACGCAGAAATATGAAGATGTGCCTAAGCCGACGTACCACCCTATCGATCCACGCCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
15536268 CGCATCCCGTCTCTCTGGCCGACGTAGT----GCCTGCCCGCCCGCCCGCTCGTTTCGTCGATTG
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* ** * * * * *
15536329 GCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAGGGTTG-CAGTAGCAAG
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGA-CAGCAGG
* * * * * * * * *
15536393 ATCGGTAGCACGCAAAGGGGGACCTGACCGATCCTCGACTTGGGCATCCCGCCCCTCTGGTCGGC
775 ATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * *
15536458 TGACCGCTCGCATGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTTTAA
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
15536520 GCATATGGAGTTCATTCCCAGTCTAAGGTCGGACCAGACCGATGGTTGTGGTAGCACATGTTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15536585 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC-TCGGAGCATCGTTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * ** *
15536649 ACTTGACCGGCGGCGTTGGGGTTCCGACGATTAGGGGGCCGGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC--GGGGGTGTGCGCACATGATGTGC
* *
15536714 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACTTCGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15536779 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15536844 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAA-TTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
15536908 GCTTGCCAACAAAAATACAAGGATCATGTCTAGCAAGTTTGGGGCTAAAACTTCTAT-CGAACAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCT-TCCGAAAAA
* * * ** *
15536972 ATTTAAAAAAAATCACAAACCGCAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCT
453 ATTT-TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15537037 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCACTATATGAATTTACAAGCCATAAAAATTGG
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA-TGG
** ** *
15537102 -ATTGGCACACAGAAATATGAAGATGCACGTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * *
15537166 CGCATCCCGTCTCTCTGTCCGACGTAGTGCCTGCCCGCGCGCCCGCCTTCCCGCCTGCTCGTTTC
646 CGCATCCCGTCTCTCTGGCCGACGTA--G--TGCCCGCCCGCCCG----CCCGCCCGCTCGTTTC
* * * * * **
15537231 ATCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCAGATCGGATCAAGGGTTGCAA
703 GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGA
* ** * *
15537296 CAGCAGGATCAGCAGCACACATTGGGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCCTCT
768 CAGCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCT
* ** * * * *
15537361 GGCTGGCTGAGCGCCCGCACATTTGGTTCATGGGTTGACTTAGCCATACGGAGTTCATTCCCAGT
833 GGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGT
15537426 CTAA
898 CTAA
* ** * *
15537430 GCATACGGAGTTCATTCTCAGTCTAAGATCGGACCAAACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15537495 CTCGGGCATGAGCTGGTGCCGCATTTTTCTTCGTCGGGACACCATCGTCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
15537560 ACCTGACTGGCGGCATTGGGGTTCCGGTGAACGGGGGGGCGGGGGGTGTGCGCACATGATGTGAG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCCGGGGGTGTGCGCACATGATGTGCG
* * *
15537625 ATGGGTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAAAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
* *
15537690 CCCCTTAAAGAGCATTTTAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* *
15537755 GGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTTGAGTTTTTAGCTGAATTTTTTTGTG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * * * * *
15537820 CATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTCTAGGGCCAAAAATCCTTCCGAAATAAT
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
* ** * *
15537885 TTTAAAAAATCCCAAACCGTGAAAAGTTTCGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGC
455 TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
* *
15537950 CATGAAACTTCACATGAAGGTTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
15538015 GGAACAT--ACAAATATGAAGATGTACCTAAACCCACCTACCACCCTTTTGATCCACGGCTTGCG
585 GG--CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
15538078 CATCCCGTCTCTCTGGCCGACGTAGTGCTCGCCTGCCCGCCCGCCCCCTCATTTTGTCGGTTGGC
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* * * *
15538143 TTAAGCAT-CAGAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGTGACAGCAGGATC
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATC
* * * * * * * ** *
15538207 GACAGCACATAGAGAGGGACCTGACCAATCCTCGGCTTGCGCATCTTGCCCGTCTGGCCGGCTGA
778 GGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* * *
15538272 GCGCCCGTACGCTCATTTCGT-GGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAA
843 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *** * * * *
15538330 GCATATGGAGTTCATTCCCAAAATAAGATCAGACTAGG-CCGAGGGTTGTGGCAGCACAAGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-CGGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
15538394 GCTCAGGCATGTGCTGGTGCCGCATTTGTCTTCGTCGGGGCACCTTCGTCGGAGCATCGTCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAG
* * *
15538459 AACCTGACCGGCAGCATTCGGGTTCCAGCGATCGGGGGGCCAGGGGGTGTGCGCACATGATGTGC
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGC
*
15538524 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15538589 CCCTCTTAAAGAGCATTTGCGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* **
15538654 GGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATGATTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
15538719 GCATACCAACAAAAATACAAGGATCACGCCTACCAAGTTTGGGGCCAAAACTCTTTTCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * ** * *
15538784 TTTTAAAAAATCTCGAACCGCTAAAAGTTTTGAAAATCATGAAAAATAGAAAATGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
15538849 CCATGAAACTTCACGTGAAGGCTTGAGGGGTCCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 CCATGAAACTTCACGTGAAGGCTT-AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15538914 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * ** * * *
15538979 CATCCCGTCTCTTTGGCCGACATAGTGCCCGCCCGTCAGCCCGGACGCTCATTTCATCAGTTGGC
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGC
* ** *
15539044 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATC-GAACTGGACCGAGGGTTGCAACAGCAGGTT
713 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGTGACAGCAGGAT
* ** * * * * **
15539108 TGGCAGCACGTAGAGGGGGACCTGGTCGATCCCCGGCTTACGCATCCCACCCCTAAGGCCGGCTG
777 CGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
*
15539173 AGCGCCCGCACGCTCGTTTCATGGGTTGAC-T-----T----AG----------G---AA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15539210 -C--ACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15539272 CTCGGGCATGTGCTGGTGTCGCATTTCTCTTCGTCGGGGCACCATCGCCAGAGCAACGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
15539337 ACCTGACTGGCGGCATTGGGGTTTCGACGATCGGAGGGGCCGGGGGGGTGTACACACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGG-GGGGCC--GGGGGTGTGCGCACATGATGTG
*
15539402 CGATGGGTGGTGGTACTTGGCCC-T-TATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15539465 ACCCCCTTAAAGAGCATTTGAGATTTTACCGGTTTGCTGCTAATAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15539530 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTT
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
15539595 TGCATGCCAACAAAAATACAAGGATCACGTCTACAAAGTTT-GGGCCAAAACTCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* *
15539659 ATTTTAAAAAATCCCGAACCGTAAAAAGTTCCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15539724 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAAAAGCCATAAAAATGGCT
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * * *
15539789 TTGGCATGCAGAAACATGATGATGTGCCAAAACCCACCAACCACCCTATCGATCCACGGCATGCA
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * ** * * * * *
15539854 AATCTCGTCTCTCAAGTCGATGTAGTGCCCGCCCGTCCGCCTACCCGCCTGCCCGTATTTTTCGT
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG--C-CC-GCCCGCCCGCTCG----TTTCGT
* * * * **
15539919 CAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGATTAGACCGGACCGAGGGTTGCGGTA
705 CGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACA
* * * * * * *
15539984 GCAGGATCTGTAGCACGCAGAGGGAGACCCAGCCGATCCCCAGCTTGTGCATCCCGCCCCTCTGG
770 GCAGGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGG
* * * *
15540049 TCGACTGAGCGCCCGCATGCTCGTTTCGTGGTTTGACTTAGGCATACGGAGTTCA-T-----TC-
835 CCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
15540107 --
900 AA
* *
15540107 -C-T----AG-TC--T----G----AGATCGGACCGAACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15540155 CTCGGGCATGTGCTGGGGCTGTATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCAGAAA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* ** * * *
15540220 ACCTGACTGGCGGTGTTAGGGTTCCGGCGATCGGGGGACCGGGGGGTGTGCGCACATGATGTGAG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGGTGTGCGCACATGATGTGCG
* *
15540285 ATGGGTGTTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
195 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
*
15540350 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTGAAATGG
260 CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
* * * * *
15540415 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTGTAGGTGACTTTTTTTATG
325 GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
* * *
15540480 AATGCCAACAAAAAGACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCC-AAAACAA
390 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AA
* * * *
15540544 TTTTAAAAAATCCTGAACCGTAAAAAGTTTCAAAAATAGTGAAAAATAGAAAATGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
15540609 CCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTCACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15540674 TGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** * * * *
15540739 ATCCCGTCTCTTTGGCCGACGTAGT-TTCGCCCGCCCGCCTGGCCACTCATTTCGTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
** * * * **
15540803 TAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACTGGACCGAGGGTTGGGGCAGCAGGATTT
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCG
* * ** ** *
15540868 GCAGCACGCAGAGGGGAACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTACCCGGCTAAG
779 GCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* *
15540933 CGCCCGTACGCTTGTTTCGT-GG--G---T-----T---GA---C-TT---AG-----
844 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15540965 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGACAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15541030 CTCGGGCATGTGCTAGTGCCGTATTTCTCTACGTCGGGGCACCATCACATC--AGCATCGCCGGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--CGTCGGAGCATCGTCGGA
* * * * *
15541093 GAACTTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCCGGGGGGTGAGCACACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-CC-GGGGGTGTGCGCACATGATGT
15541158 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
15541222 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15541287 TGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * *
15541352 TGTGCATGCCAA-AAAAATACAAGGATCACCTTTACCAAGTTTGGGGCCAAAACTACTTCCGAAA
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * * *
15541416 AAATTTAAAAAAATCCCTAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15541481 TTGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* ** * *
15541546 CATTGACACACAAAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
15541611 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCTCTCATTTCGTCGGTTA
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
** * * *
15541676 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGAGTTGCT-ACAGCAAG
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG-TGACAGCAGG
* * * * *
15541740 ATCGACAGCACACAGAGGAGGACCCAGCCGATCCCCAGCTTACGCATCCCG-CCCTCTGGCCGGC
775 ATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
15541804 TGAGCACCCGTACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTTCCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15541866 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15541931 ATCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* *
15541996 ACCTGACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGTGGGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC--GG-GGGTGTGCGCACATGATGT
* * * *
15542061 GCGTTGGGTGCTGGTTCTTGGCCATTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15542126 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15542191 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * *
15542256 GTGCATGCCAACAAAAATTCAAGGATCACCTTTACCAAGTTTGGGGCCAAAACTACTTCCGAAAA
387 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * * * *
15542321 AATTTAAAAAAATCCCTAACCACAAAAAG-TTCTAAAAATCATGAAAAATAAAAAATGAGTCGTC
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTC-AAAAATCGTGAAAAATAGAAAACGAGTCGTC
* * * *
15542385 TTGCCATCAAACTCCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAATAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * * *
15542450 CATTGGCACACAAAAATATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
15542515 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCAGCCCGCCCACCCGCCCTCTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTG
* *
15542580 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTG-CAGCAGTAGG
711 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGA-CAGCAGG
** * * * * *
15542644 ATCGGCAGCATGCAGAGGGGGATGCC-GTCGATCCCCAGCTTACGCATCCCGCCCCTCTGGCCAG
775 ATCGGCAGCACACAGAGGGGGA-CCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
*
15542708 CTGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
839 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15542771 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * ** ** * * *
15542836 CTCTAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGACCGTCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * *
15542901 ACCTGACCGGTGACATTGGGGTTCCAGCGATCGGGGGGGTCGGGGGGTGTGCGCACTTGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGG-CCGGGGGTGTGCGCACATGATGTGC
* * * *
15542966 GATGGGTGCTGGTACGTGGCCCTTATATTGGCCCTCTATCTCTCATCAAACCTCCAGAACTCACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15543031 CCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15543096 GGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15543160 GCATGCCAA-AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAAAA
389 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
15543224 TTTTAAAAAATCCTGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCCTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
15543289 CCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * * * *
15543354 TGGCATGCAAAAATATGTAGATCTTCCTAAGCCCACCTACCACCCTATCGATCCATGGCTTGCGC
584 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * ** * *
15543419 ATCCCGTCTCTTTGGCCAACGTAGT----GCCCTTCCGCCCGCCCACTCGTTTCGTCAGTTGGCT
649 ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * * * *
15543480 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGTAGGATTG
714 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCG
* * ** * * * * *
15543545 GTAGAATGCAGAGGGGGACTCGACCGATCCCCGGCCTGCTCATCCCGCCCCTCTGGCCGGTTGAG
779 GCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
15543610 CACCCGCACGCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAA
844 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * * * * *
15543668 ACATACAAAGTTCAATCCCAGTCTAAGATCAGTCCAGACCGAGGGCTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * *
15543733 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGTCGGGGCATCATTGTCGGAGCATCG-CTGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTC-GGAG
* * *
15543797 AACCTGACCCGCGGCATT-GGGTTCCAGCGATCGGGGGGGCTGGTGGGGGTGTGCGCACATGATG
130 AACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGC---CGGGGGTGTGCGCACATGATG
* * * *
15543861 TGTGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCTAGAACTC
191 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
15543926 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
256 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15543991 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTT
321 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * * *
15544056 TTTGCATGCCAGCAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAATCTTCTTTCGAAG
386 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * *
15544120 AAATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAAACGAGTCGT
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAAT-AGAAAACGAGTCGT
15544185 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG--TGAATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
15544248 GCATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTT
580 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * * *
15544313 GCGCTTCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGTCCGCCAGCTCGCTCGTTTCGTCGGTT
645 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTT
* * * * ** *
15544378 GGCTTAGGCATACAGAGTTC-TTCCTAATCTGAGATCAGACCGGACAAAGGGTTGTGGCAGCAGG
710 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGG
** * * *
15544442 ATCGATAGCACACAGAGGGGGACCCGGCTGATCTCCGGCTTGCGCATCCCGCCCCTCTGGCTGGC
775 ATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* *
15544507 TGAGCGCCTGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
15544569 GCATACGGAGTTCTTTCCCAGTCTAAGATCGAACGGGATTGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT-GG
** *
15544634 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGTG--CCATCGTCGGAGCAT-GCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG-GCACCATCGTCGGAGCATCGTCGGA
* * *
15544696 GAACCTGATCGACGGCATTGGGGTT-CGGCGATCAGGGGGGCCGGGGGGTGTGCACACATGATGT
129 GAACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGCC-GGGGGTGTGCGCACATGATGT
* * *
15544760 GCGATGGGTGCTGGTAC-TGGCCCCTTGTATTGGCCCCCTATCTCTCATCCAAACCTCTAGAACT
192 GCGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCGAGAACT
* *
15544824 CACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
*
15544889 AATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTT-GAG-CTTTAGCTGAA-TTTT
320 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* *
15544950 TTGTGCATGCCAACAAAAATAACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTCGA
385 TTGTGCATGCCAACAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* *
15545015 AAAGATTTTAAAAAATCCCGAAACCGTAAAAAGTTTTCAAAAATCGTGAAAAATAG-AAACGGAG
449 AAAAATTTTAAAAAATCCCG-AACCGCAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAAC-GAG
* * *
15545079 TCGTGC-TGCCATGAAACTTTCAACCTTGGAAGGCTTAAGGGACCATTGTATGCATTTACAAAAC
511 TCGT-CTTGCCATGAAAC-TTC-A-CGT-GAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGC
* * * *
15545143 CATAAAAATGGCTTTGGGCATGCAGAAATATGAAGCTGTACCTAAAACCCAACCTACCACCCCGA
570 CATAAAAATGGCATT-GGCATGCAGAAATATGAAGATGTGCCT-AAACCC-ACCTACCA-CCCTA
* * * * *
15545208 TCGATCAAC-GCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTTCCACGCCCGCCCCGGCCGCCC
631 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCC-CGCCCG-CCCGCCCGCCC
* * * * *
15545272 GCTCGTTTCGTCGGTGGGCTTAGGCATACGGGAGTGTCA-TCCCAGTCTATGATCATACCGAACT
694 GCTCGTTTCGTCGGTTGGCTTAGGCATAC-GGAGT-TCATTCCCAGTCTAAGATCAGACCGGACC
* * ** *
15545336 GAGGGTTGCTGGCAGCCAGGGATCGGTAGCACACAGAGGGGGACCCGATCGATCCCC-G-ATGCG
757 GAGGGTTG-TGACAG-CA-GGATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCG
* * * * * ** **
15545399 CAGT-AC-ACCCTCTGGCCGGCTGAACACCCGCACGCTTGTTTCCAGGG-TGACTTAGGGTTACG
819 CA-TCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACG
*
15545461 GAGTTCATTCCCAATCTAA
883 GAGTTCATTCCCAGTCTAA
* * *
15545480 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** * *
15545545 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCCCCAGGAAACCATCGACGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * * *
15545610 ACTTAACCAGCGGCATTAGGGTTCCGTCGATCGGGGGGGCTGGGGGGTGTGCGCACACGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATC-GGGGGGC-CGGGGGTGTGCGCACATGATGTGC
* * *
15545675 GATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTTACA
194 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
*
15545740 CCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15545805 AGGACACTTTTTTCGAATGGTCACAAAATATTGTACACTTCGATTTTTTAGCTGAATTTTTTTGT
324 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * * *
15545870 GGCATGGCCAAAAAAAAAGCACAAGGATCACATCTACCAAGTTTGGGGCTAAAATTCCTTCCAAA
389 -GCAT-GCC-AACAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* ** *
15545935 AAAATTTTGAAAAAATCCCG-ACCG-TAAAAGTTTTGAAAATCGTGAAAAATAG-AAACGAGTCA
450 AAAATTTT-AAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
* *
15545997 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGCATTTACAAGCCATAAAAAT
514 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
* * * *
15546062 GGCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACATACCACCCGATCGATCCATGGCT
579 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * **
15546127 TGCGCATCCTGTCTCTCTGGCCGGCGTAGT----TCCTGCCCGCCCGTCCGCTCATTTCAACGGT
644 TGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGT
* * *
15546188 TGGCTTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAG
709 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAG
* * * * *
15546253 GATCGGTAGCACACAGAGGGGGACCCGACTGATCCCCGG-TTGTGCATCCCACCCCTCTGGCCGG
774 GATCGGCAGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * * *
15546317 CTAAGCGCCCGTACGCTCGTTTCATGGGTTTACTTAGGCATACGAAGTTCATTCCCAATCTAA
839 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15546380 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15546445 CTCGGGCATGTGCTGGTGCCGTATTTTTCTACCTCGGGGCTCCATTGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
* * * * * *
15546510 ACTTGAACAGCGACATTAGGGTTCTGGCGATCGGGGGGACCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGG-CC--GGGGGTGTGCGCACATGATGTG
* *
15546575 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCTTGAGAACTCAC
193 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15546640 ACTCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
258 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15546705 GGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACGCTTCGTGTTTTTAGCTGAGTTTTTTTG
323 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
15546770 TGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCGAAAAA
388 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* * * ** * *
15546835 ATTTTGAAAAATCCCAAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTAGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15546900 GCCATGAAACTTCACGTGAAGGCTTAGGGGACCA-TGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15546964 TTGCCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
15547029 CATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCC
648 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCC
15547063 TCACGTCTAC
Statistics
Matches: 13898, Mismatches: 1723, Indels: 617
0.86 0.11 0.04
Matches are distributed among these distances:
858 2 0.00
859 1 0.00
860 1 0.00
861 2 0.00
864 3 0.00
865 2 0.00
867 1 0.00
869 1 0.00
871 4 0.00
872 88 0.01
873 94 0.01
874 5 0.00
875 806 0.06
876 305 0.02
877 334 0.02
878 8 0.00
879 103 0.01
880 6 0.00
881 45 0.00
882 9 0.00
883 529 0.04
884 622 0.04
886 2 0.00
887 76 0.01
888 9 0.00
889 441 0.03
890 138 0.01
891 1 0.00
892 1 0.00
893 8 0.00
894 2 0.00
895 25 0.00
896 282 0.02
897 744 0.05
898 1084 0.08
899 693 0.05
900 1560 0.11
901 1370 0.10
902 333 0.02
903 227 0.02
904 1041 0.07
905 506 0.04
906 56 0.00
907 47 0.00
908 49 0.00
909 46 0.00
910 756 0.05
911 240 0.02
912 371 0.03
913 382 0.03
914 78 0.01
915 64 0.00
916 125 0.01
917 94 0.01
918 10 0.00
919 55 0.00
920 11 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCCGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGTGACAGCAGGATCGGC
AGCACACAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15536523 original size:26 final size:26
Alignment explanation
Indices: 15536494--15536546 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15536484 GTTGACTTAG
*
15536494 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15536520 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15536546 G
1 G
15536547 GTCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15537436 original size:26 final size:26
Alignment explanation
Indices: 15537405--15537456 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15537395 TTGACTTAGC
15537405 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
15537431 CATACGGAGTTCATTCTCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15537457 ATCGGACCAA
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15538356 original size:26 final size:26
Alignment explanation
Indices: 15538304--15538356 Score: 61
Period size: 26 Copynumber: 2.0 Consensus size: 26
15538294 GTTGACTTAG
* ***
15538304 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAAAATAA
*
15538330 GCATATGGAGTTCATTCCCAAAATAA
1 GCATACGGAGTTCATTCCCAAAATAA
15538356 G
1 G
15538357 ATCAGACTAG
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAAAATAA
Found at i:15541870 original size:26 final size:26
Alignment explanation
Indices: 15541840--15541892 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15541830 GTTCACTTAG
*
15541840 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15541866 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15541892 G
1 G
15541893 ATCGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15542781 original size:26 final size:26
Alignment explanation
Indices: 15542745--15542797 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15542735 GTTGACTTAG
15542745 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15542771 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15542797 G
1 G
15542798 ATCGAACCGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15544579 original size:26 final size:26
Alignment explanation
Indices: 15544543--15544595 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15544533 GTTGACATAG
15544543 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15544569 GCATACGGAGTTCTTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15544595 G
1 G
15544596 ATCGAACGGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15545493 original size:26 final size:26
Alignment explanation
Indices: 15545457--15545506 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15545447 GACTTAGGGT
15545457 TACGGAGTTCATTCCCAATCTAAGCA
1 TACGGAGTTCATTCCCAATCTAAGCA
*
15545483 TACGGAGTTCATTCCCAGTCTAAG
1 TACGGAGTTCATTCCCAATCTAAG
15545507 ATCGGACTGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (26 bp):
TACGGAGTTCATTCCCAATCTAAGCA
Found at i:15546384 original size:26 final size:26
Alignment explanation
Indices: 15546354--15546406 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15546344 GTTTACTTAG
15546354 GCATACGAAGTTCATTCCCAATCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
* *
15546380 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAATCTAA
15546406 G
1 G
15546407 ATCGGACTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAATCTAA
Found at i:15546627 original size:901 final size:897
Alignment explanation
Indices: 15540965--15547062 Score: 7998
Period size: 901 Copynumber: 6.8 Consensus size: 897
15540955 GTTGACTTAG
* * * *
15540965 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACTGAGGGTTACGACAGCATATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * ***
15541030 CTCGGGCATGTGCTAGTGCCGTATTTCTCTACGTCGGGGCACCATCACATCAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
15541095 ACTTG-ACCGACGGCATTGGGGTTCCGACGATCGGGGGGTCCGGGGGGTGAGCACACATGATGTG
131 ACCTGAACCG-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
15541159 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAC
15541223 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15541288 GGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTCAATTTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTT
* * *
15541353 GTGCATGCC-AAAAAAATACAAGGATCACCTTTACCAAGTTTGGGGCCAAAACTACTTCCGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * **
15541417 AATTTAAAAAAATCCCTAACCACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCCCAAACC-GTAAAAGTTTTAAAAATCGTGAAAAATAG-AAACGAGTCGTCT
*
15541482 TGCCATGAAACTTGACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* ** *
15541547 ATTGACACACAAAAATATGAACATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
15541612 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCTCGCCCTCTCATTTCGTCGGTTAG
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG-CC-C-CGCCCGCTCGTTTCGTCGGTTGG
** * * *
15541677 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCGGACCAAGAGTTGCT-ACAGCAAGA
709 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTG-TGGCAGCAGGA
** * * * *
15541741 TCGACAGCACACAGAGGAGGACCC-AGCCGATCCCCAGCTTACGCATCCCG-CCCTCTGGCCGGC
773 TCGGTAGCACACAGAGGGGGACCCGA-CTGATCCCC-GGTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
15541804 TGAGCACCCGTACGCTCGTTTCATGGGTTCACTTAGGCATACGGAGTTCATTTCCAGTCTAA
836 TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15541866 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * *
15541931 ATCGGGCATGTCCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCCGGAGCATCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
*
15541996 ACCTG-ACCGACGGCATTGGGGTTCTGGCGATCGGGGGGGCCGGGGTGGGTGTGCGCACATGATG
131 ACCTGAACCG-CGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGG-GGGTGTGCGCACATGATG
* * * * *
15542060 TGCGTTGGGTGCTGGTTCTTGGCCATTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTC
*
15542125 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* *
15542190 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * * *
15542255 TGTGCATGCCAACAAAAATTCAAGGATCACCTTTACCAAGTTTGGGGCCAAAACTACTTCCGAAA
388 TGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
* * ** * * * *
15542320 AAATTTAAAAAAATCCCTAACCACAAAAAGTTCTAAAAATCATGAAAAATAAAAAATGAGTCGTC
453 AAATTTTAAAAAATCCCAAACC-GTAAAAGTTTTAAAAATCGTGAAAAAT-AGAAACGAGTCGTC
* * * *
15542385 TTGCCATCAAACTCCACGTGAAGGCTTAAAGGACCATTGTATGAATTTACAAGCCATAATAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
** * *
15542450 CATTGGCACACAAAAATATGAAGATGTACCTAAACCAACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
15542515 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCAGCCCGCCCACCCGCCCTCTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG--C-CCCGCCCGCTCGTTTCGTCGGTTG
* ** *
15542580 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGCAGTAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGA
* ** * * * * *
15542645 TCGGCAGCATGCAGAGGGGGATGCCGTC-GATCCCCAGCTTACGCATCCCGCCCCTCTGGCCAGC
773 TCGGTAGCACACAGAGGGGGA-CCCGACTGATCCCC-GGTTGCGCATCCCGCCCCTCTGGCCGGC
* * *
15542709 TGAGCGCCCACACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 TGAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* *
15542771 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * ** * * * **
15542836 CTCTAGCATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCATCACCGGACCGTCATCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
15542901 ACCTG-ACCG-GTGACATTGGGGTTCCAGCGATCGGGGGGGTCGGGGGGTGTGCGCACTTGATGT
131 ACCTGAACCGCG-G-CATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * *
15542964 GCGATGGGTGCTGGTACGTGGCCCTTATATTGGCCCTCTATCTCTCATCAAACCTCCAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
*
15543029 CACCCCCTTAAAGATCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15543094 TGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACATCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
15543158 GTGCATGCC-AAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCATCCGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
** * * * * *
15543222 AATTTTAAAAAATCCTGAATCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCCTCT
454 AATTTTAAAAAATCCCAAACCG-TAAAAGTTTTAAAAATCGTGAAAAATAG-AAACGAGTCGTCT
* *
15543287 TGCCAAGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCTATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * *
15543352 ATTGGCATGCAAAAATATGTAGATCTTCCTAAGCCCACCTACCACCCTATCGATCCATGGCTTGC
582 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* ** * * *
15543417 GCATCCCGTCTCTTTGGCCAACGTAGTGCCCT-TCCG-CCCGCCCACTCGTTTCGTCAGTTGGCT
647 GCATCCCGTCTCTCTGGCCGGCGTAGTG-CCTGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCT
* * * * * *
15543480 TAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACTGGACCAAGGGTTGCGGCAGTAGGATTG
711 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCG
* ** * * * * *
15543545 GTAGAATGCAGAGGGGGACTCGACCGATCCCCGGCCTGCTCATCCCGCCCCTCTGGCCGGTTGAG
776 GTAGCACACAGAGGGGGACCCGACTGATCCCCGG-TTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * *
15543610 CACCCGCACGCTCATTTCGTGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAA
840 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * * * * *
15543668 ACATACAAAGTTCAATCCCAGTCTAAGATCAGTCCAGACCGAGGGCTACAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15543733 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTTGTCGGGGCATCATTGTCGGAGCATCGCTGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * *
15543798 ACCTGACCCGCGGCATT-GGGTTCCAGCGATCGGGGGGGCTGGTGGGGGTGTGCGCACATGATGT
131 ACCTGAACCGCGGCATTGGGGTTCCGGCGATCGGGGGGGC-CG-GGGGGTGTGCGCACATGATGT
* * *
15543862 GTGATGGGTGCTGGTACTTTGCCCTTATATTGGCCCCCTATGCCTCATCAAACCTCTAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCA
15543927 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15543992 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* ** * * * *
15544057 TTGCATGCCAGCAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAATCTTCTTTCGAAGA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * *
15544121 AATTTTAAAAAATCCCAAACCGTAAAAAGTTTTGAAAATCATGAAAAATAAAAAAACGAGTCGTC
454 AATTTTAAAAAATCCCAAACCGT-AAAAGTTTTAAAAATCGTGAAAAAT--AGAAACGAGTCGTC
15544186 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTG--TGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * * *
15544249 CATTGGCATACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCATGGCTTG
581 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* *
15544314 CGCTTCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGTCCGCCAGCTCGCTCGTTTCGTCGGTTG
646 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCG-CC-CC-GCCCGCTCGTTTCGTCGGTTG
* * * * *
15544379 GCTTAGGCATACAGAGTTC-TTCCTAATCTGAGATCAGACCGGACAAAGGGTTGTGGCAGCAGGA
708 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGA
* * * *
15544443 TCGATAGCACACAGAGGGGGACCCGGCTGATCTCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCT
773 TCGGTAGCACACAGAGGGGGACCCGACTGATCCCCGG-TTGCGCATCCCGCCCCTCTGGCCGGCT
* * * *
15544508 GAGCGCCTGCACGCTCGTTTCGTGGGTTGACATAGGCATACGGAGTTCATTCCCAGTCTAA
837 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * ** *
15544569 GCATACGGAGTTCTTTCCCAGTCTAAGATCGAACGGGATTGAGGGTTGCGACAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCT-GG
** *
15544634 GCTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGTG--CCATCGTCGGAGCAT-GCCGGA
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG-GCACCATCGCCGGAGCATCGCCGGA
* * *
15544696 GAACCTG-ATCGACGGCATTGGGGTT-CGGCGATCAGGGGGGCCGGGGGGTGTGCACACATGATG
129 GAACCTGAACCG-CGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATG
* *
15544759 TGCGATGGGTGCTGGTAC-TGGCCCCTTGTATTGGCCCCCTATCTCTCATCCAAACCTCTAGAAC
193 TGCGATGGGTGCTGGTACTTGG-CCCTTATATTGGCCCCCTATCCCTCAT-CAAACCTCTAGAAC
* *
15544823 TCACACCCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTG
256 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
*
15544888 AAATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGTACACTT-GAG-CTTTAGCTGAA-TTT
321 AAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * *
15544949 TTTGTGCATGCCAACAAAAATAACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTCG
386 TTTGTGCATGCCAAAAAAAAT-ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG
*
15545014 AAAAGATTTTAAAAAATCCCGAAACCGTAAAAAGTTTTCAAAAATCGTGAAAAATAGAAACGGAG
450 AAAAAATTTTAAAAAATCCC-AAACCGT-AAAAGTTTT-AAAAATCGTGAAAAATAGAAAC-GAG
* * *
15545079 TCGTGC-TGCCATGAAACTTTCAACCTTGGAAGGCTTAAGGGACCATTGTATGCATTTACAAAAC
511 TCGT-CTTGCCATGAAAC-TTC-A-CGT-GAAGGCTTAAGGGACCATTGTATGAATTTAC-AAGC
* * * * *
15545143 CATAAAAATGGCTTTGGGCATGCAGAAATATGAAGCTGTACCTAAAACCCAACCTACCACCCCGA
570 CATAAAAATGGCATT-GGCATGCAAAAATATGAAGATGTGCCT-AAACCC-ACCTACCA-CCCTA
* * * *
15545208 TCGATCAAC-GCTTGCGCATCCTGTCTCTCTGGCCGGCGTAGTTCCACGCCCGCCCCGGCCGCCC
631 TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC-TGCCCG--CC--CCGCCC
* * * * *
15545272 GCTCGTTTCGTCGGTGGGCTTAGGCATACGGGAGTGTCA-TCCCAGTCTATGATCATACCGAACT
691 GCTCGTTTCGTCGGTTGGCTTAGGCATAC-GGAGT-TCATTCCCAGTCTAAGATCAGACCGGACC
* *
15545336 GAGGGTTGCTGGCAGCCAGGGATCGGTAGCACACAGAGGGGGACCCGA-TCGATCCCC-GATGCG
754 AAGGGTTG-TGGCAG-CA-GGATCGGTAGCACACAGAGGGGGACCCGACT-GATCCCCGGTTGCG
* * * * **
15545399 CAGT-AC-ACCCTCTGGCCGGCTGAACACCCGCACGCTTGTTTCCA-GGG-TGACTTAGGGTTAC
815 CA-TCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT-CATGGGTTGACTTAGGCATAC
*
15545460 GGAGTTCATTCCCAATCTAA
878 GGAGTTCATTCCCAGTCTAA
* * *
15545480 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGCAGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* ** * ** *
15545545 CTCGGGCATGTGCTGGTGCTGCATTTTTCTTCCCCAGGAAACCATCGACGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * *
15545610 A-CTTAACCAGCGGCATTAGGGTTCCGTCGATCGGGGGGGCTGGGGGGTGTGCGCACACGATGTG
131 ACCTGAACC-GCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
15545674 CGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTTAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAC
*
15545739 ACCCCCTTAAAGAGCAATTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15545804 GAGGACACTTTTTTCGAATGGTCACAAAATATTGTACACTTCGATTTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * *
15545869 TGGCATGGCCAAAAAAAAAGCACAAGGATCACATCTACCAAGTTTGGGGCTAAAATTCCTTCCAA
390 T-GCAT-GCC-AAAAAAAA-TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGA
* * *
15545934 AAAAATTTTGAAAAAATCCC-GACCGTAAAAGTTTTGAAAATCGTGAAAAATAGAAACGAGTCAT
451 AAAAATTTT-AAAAAATCCCAAACCGTAAAAGTTTTAAAAATCGTGAAAAATAGAAACGAGTCGT
* *
15545998 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTGTGCATTTACAAGCCATAAAAATG
515 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * * *
15546063 GCATTGGCATGCATAAATATGAAGATGTGCCTAAACCCACATACCACCCGATCGATCCATGGCTT
580 GCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * **
15546128 GCGCATCCTGTCTCTCTGGCCGGCGTAGTTCCTGCCCG-CCCGTCCGCTCATTTCAACGGTTGGC
645 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGC
* **
15546192 TTAGGCATACGGAGTTCATTCCCAGTGTAAGATCAGACCGGACTGAGGGTTGTGGCAGCAGGATC
710 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATC
* * *
15546257 GGTAGCACACAGAGGGGGACCCGACTGATCCCCGGTTGTGCATCCCACCCCTCTGGCCGGCTAAG
775 GGTAGCACACAGAGGGGGACCCGACTGATCCCCGGTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * * *
15546322 CGCCCGTACGCTCGTTTCATGGGTTTACTTAGGCATACGAAGTTCATTCCCAATCTAA
840 CACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15546380 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACTGGACCAAGGGTTACGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * *
15546445 CTCGGGCATGTGCTGGTGCCGTATTTTTCTACCTCGGGGCTCCATTGCCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
* * * * * *
15546510 ACTTGAACAGCGACATTAGGGTTCTGGCGATCGGGGGGACCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGAACCGCGGCATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
*
15546575 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCGTCAAACCT-TGAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCT-AGAACTCA
* *
15546639 CACTCCCTTAAAGAGCATTTGAAATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15546704 TGGGGACACTTTTTTCAAATGGTCACAAAATGTTGTACGCTTCGTGTTTTTAGCTGAGTTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * **
15546769 GTGCATGACAACAAAAATACAAGGATCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
15546834 AATTTTGAAAAATCCCAAACCGTAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTAGTCT
454 AATTTTAAAAAATCCCAAACCGT-AAAAGTTTTAAAAATCGTGAAAAATAG-AAACGAGTCGTCT
*
15546899 TGCCATGAAACTTCACGTGAAGGCTTAGGGGACCA-TGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15546963 ATTGCCAAGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
582 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * *
15547028 GCATCCCGTCTCTCTGGTCGACGTAGTGCCCGCCC
647 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCTGCCC
15547063 TCACGTCTAC
Statistics
Matches: 4593, Mismatches: 506, Indels: 199
0.87 0.10 0.04
Matches are distributed among these distances:
895 22 0.00
896 68 0.01
897 433 0.09
898 552 0.12
899 318 0.07
900 326 0.07
901 843 0.18
902 160 0.03
903 212 0.05
904 542 0.12
905 238 0.05
906 42 0.01
907 49 0.01
908 47 0.01
909 39 0.01
910 85 0.02
911 137 0.03
912 170 0.04
913 121 0.03
914 14 0.00
915 60 0.01
916 29 0.01
917 13 0.00
918 8 0.00
919 55 0.01
920 10 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (897 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGA
ACCTGAACCGCGGCATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCCCAAACCGTAAAAGTTTTAAAAATCGTGAAAAATAGAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGGCGTAGTGCCTGCCCGCCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCAAGGGTTGTGGCAGCAGGATCGGTAGC
ACACAGAGGGGGACCCGACTGATCCCCGGTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCACCCG
CACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15547273 original size:269 final size:269
Alignment explanation
Indices: 15546794--15547331 Score: 862
Period size: 269 Copynumber: 2.0 Consensus size: 269
15546784 AATACAAGGA
* *
15546794 TCACGTCTACCAAGTTTGGCTCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGTAA
1 TCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGCAA
*
15546859 AAAGTTTTGAAAATTGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCT
66 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCT
* *
15546924 TAGGGGACCATGTATGAATTTACAAGCCATAAAAATGGCATTGCCAAGCAAAAATATGAAGATGT
131 TAAGGGACCATGTATGAATTTACAAGCCATAAAAATGGCATTGCCAAGCAAAAATATGAAGATAT
* * * *
15546989 GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGTCGACGTAG
196 GCCTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACATAG
15547054 TGCCCGCCC
261 TGCCCGCCC
* * * *
15547063 TCACGTCTACCAAGTTTGGGGCTAAAACTCCTTTCGAAAAAATTTTGAAAAATCCCGAACCGCAA
1 TCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGCAA
* *
15547128 AAGGTTTTGAAAATCGTGAAAAATAG-AAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
66 AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCT
* * * *
15547192 TAAGGGACCATTGTATGCATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATA
131 TAAGGGACCA-TGTATGAATTTACAAGCCATAAAAATGGCATTGCCAAGCAAAAATATGAAGATA
* *
15547257 TGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCTGTCTCTCTGGCCGGCATA
195 TGCCTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACATA
*
15547322 GTTCCCGCCC
260 GTGCCCGCCC
15547332 GCCCGCTCAT
Statistics
Matches: 246, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
268 46 0.19
269 200 0.81
ACGTcount: A:0.32, C:0.25, G:0.19, T:0.24
Consensus pattern (269 bp):
TCACGTCTACCAAGTTTGGCGCCAAAACTCCTTCCGAAAAAATTTTGAAAAATCCCAAACCGCAA
AAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTAGTCTTGCCATGAAACTTCACGTGAAGGCT
TAAGGGACCATGTATGAATTTACAAGCCATAAAAATGGCATTGCCAAGCAAAAATATGAAGATAT
GCCTAAACCCACCTACCACCCGATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGACATAG
TGCCCGCCC
Found at i:15547557 original size:26 final size:26
Alignment explanation
Indices: 15547518--15547570 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15547508 GTTGACTTAG
* *
15547518 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACAGACTTCATTCCCAATCTAA
*
15547544 GCATACAGACTTCATTCCCAGTCTAA
1 GCATACAGACTTCATTCCCAATCTAA
15547570 G
1 G
15547571 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (26 bp):
GCATACAGACTTCATTCCCAATCTAA
Found at i:15547918 original size:26 final size:26
Alignment explanation
Indices: 15547880--15547935 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15547870 TGGGTTGACT
15547880 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* *
15547906 TAAGCATATGGAGTTTATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15547932 TAAG
1 TAAG
15547936 ATCAGACCGG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15548818 original size:26 final size:26
Alignment explanation
Indices: 15548782--15548834 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15548772 GTTGATTTAG
15548782 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15548808 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15548834 G
1 G
15548835 ATTGGACCTG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15549716 original size:26 final size:26
Alignment explanation
Indices: 15549680--15549732 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15549670 GTTGACTTAG
15549680 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15549706 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15549732 G
1 G
15549733 ATCGAACTGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15551036 original size:904 final size:896
Alignment explanation
Indices: 15547809--15551857 Score: 5233
Period size: 897 Copynumber: 4.5 Consensus size: 896
15547799 TCACACCCTA
*** * *
15547809 TCGATCCCTGGCTTGTACATCCCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGG
1 TCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGTGGG
* *
15547874 TTGACTTAAGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTT-TATTCCCAGTCTAAGAT
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCT-TTCCCAGTCTAAGAT
** ** * * * * *
15547938 CAGACCGGACCGAGGGTTGCGGGAGCACATGCTGGGCTTGATCATGTGTTGGTGCTGTATTTTTC
130 C-GAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTC
* * ** * *
15548003 TTCGCCGGGGCACCATCGTCGGAGCATCGTCGGAGAACCTGATTGGCGGTATTAGGGTTCCGACG
194 TTCGCCGGGGCACCATCG-CAGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACG
* * *
15548068 ATCGGGGGGACCGGGGGGTTGTTCGCACATAATGTGCGATGAGTGCTGGTACTTGGCCCTTATAT
258 ATCGGGGGG-CCGGGGGG-TGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
* *
15548133 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACATCCCCTTAAAGAGCATTTGACATTTTAC
321 TGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * * *
15548198 AGGTTTGCTGGCAATAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGATCACAAAA
386 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * * *
15548263 TCTTGTACACTTCGAGTTTTTAGTTGAATTTTTTTTTACATGCCAACAAAAATACAGGGATCAAG
451 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * *
15548328 TCTTCCAAGTTTGAGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATC-CTGAACCGCAAAAAG
516 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-AAACCGTAAAAAG
* * *
15548392 TTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTCAAGGCTTAAG
580 TTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
15548457 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCC
645 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCC
* * * *
15548522 TAAACCCACCTACCACCCTATCGATCC-ACGCTTGTGCATCCCGTCTCTCTGGCCGGTGTAGTGC
710 TAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCAGGCCGGCGTAGTGC
* * *
15548586 TCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAATA
775 CCGCCCGCCCGCCCGGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * *
15548651 TCGGACCAGACTGAGGGTTGTGGCAGTAGGATC-AGTAGCACGCAGAGGGGGACCCAGC
840 TCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGA-CAGCACACAGAAGGGGACCCA-C
* * * * * * *
15548709 T-GATCCCTGGCTTAAGCATCCCGCCCCTTTGGCCGGCTAAGCGTCTGCACGCTCGTTTCGAGGG
1 TCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGTGGG
* * *
15548773 TTGATTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATT
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGA-T
* * * * *
15548838 GGACCT-GATCGAGGGTTGC-AGCAGCACATGCTGGGCTC-ACGCAGGTGCTGGTGCTGCATTTT
130 CGA-ATGGACCGAGGGTTGCGA-CAGCACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTT
* * * *
15548900 TCTTTGCCTGGGCACCATCGTCAGAGCACCGTCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
192 TCTTCGCCGGGGCACCATCG-CAGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGA
* * *
15548965 CGATCGGGGGGGCCGGGGGGTGTGCGCACAT-ATGTGCGATGGTTTCTGGTACTTGGCCCTTATA
256 CGATC-GGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
15549029 TTGGCTCCCTATCCCTCATTAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
320 TTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
* *
15549094 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTCTTCAAATGGTGACAAA
385 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * *
15549159 ATCTTGCACACTTTGAGTTTTTAGCTGAATTTGTTTGTGCATGCCAACAAAAATACAAGGATCAC
450 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
* * *
15549224 ATCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAG
515 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAG
* *
15549289 TTTCAAAAATCATGAAAAATAGAAAATC-AGTTGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
580 TTTAAAAAATCATGAAAAATAGAAAA-CGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAA
*
15549353 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGC
644 GGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGC
* ** * * *
15549418 CTAAATCTTCCTACCACCCTATCAATCCACGGCTTGCGCATCCCGTCTCTCTA-GCCGACGTAGT
709 CTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTC-AGGCCGGCGTAGT
* * * * *
15549482 GCCCGCCCGCCCGCCCGTTCGTTTCGTC-ATGTGGCTTAGGCTTACGGACTTTATTCCCAGTCTA
773 GCCCGCCCGCCCGCCCGGTCGTTTCGTCGGT-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * * * * * * * **
15549546 AGATTAGACCGGACTGAGGGTTGCGACAGCAAGATCGACAGGACGCAGAGGGGGACCCGG
837 AGATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAAGGGGACCCAC
* * ** *
15549606 TCGATCCTTGGCTTACGCATCCCGACCCTCTGGATGGCTGAGCGCCCACACGCTCTTTTCGTGGG
1 TCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGTGGG
*
15549671 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATC
** * * * * * * *
15549736 GAACTGGACTAAGGCTTTCGGCGGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAGTTTTCT
131 GAA-TGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCT
* * * *
15549801 TCGTCGGGGCACCAT--C---G-----TCGGAGCACCTGATCGGCGGTATTGGGGTTCCGACGAT
195 TCGCCGGGGCACCATCGCAGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* * * * * *
15549856 CGGGGGTCCGGGTGGGAGTGCGCACATGATGTGTGATGGGTGCTGGTACTAGGCCCTTATATTAG
260 CGGGGGGCCGGG-GGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* *
15549921 CCCCCTATCCCTCATCAAACCTC-AGGAACTGACACCCCTTTAAAGAGCATTTGAGATTTTACAG
324 CCCCCTATCCCTCATCAAACCTCGA-GAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
* * * *
15549985 GTTTGTTACCAGTAGCCATTAATGAGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
388 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * * *
15550050 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATACTAAAAAAAATAGAAGGATCACGTC
453 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
**
15550115 TACCAAGTTCAGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTT
518 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTT
* * * * *
15550180 AAAAAATCATGAAAAAGAGAAAACGAGTCCTCTTGACATGAAACTTCATGTGAAAGCTTAAGGGA
583 AAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* ** *
15550245 CCAATGTATGAATTTACAAGCCATAAAAATGTTATTGGCAAGCAGAAATATGAAGATGTGCCTAA
648 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
** * *
15550310 ACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCACCTCTCAGGCCAGTGTAGTGCCCG
713 ACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCAGGCCGGCGTAGTGCCCG
* * * *
15550375 CCAGCCCGCTCACCTGGTCG-TTCGGTCGGTTGGCATAGGTATACGGAGTTCATTCCTAGTCTAA
778 CCCGCCCG--C-CC-GGTCGTTTC-GTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * * *
15550439 GATCAGATCAGACCAACGGTTGTGGTAGCAGGATCGATAGCATACAGAAGGGGACCCGAC
838 GATCAGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAAGGGGACCC-AC
* * * *
15550499 T-GATCCCTGGCTTACGCATCCCGCCCCTCTGGTCGACTGAGCGCCTGTACGCTCTTTTCGTGGG
1 TCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGTGGG
** *
15550563 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCTTTCCCAATCTAAGATC
66 TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATC
* * **
15550628 GGAATGGACCGAGAGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCATATTTTTCT
131 -GAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCT
* * * * *
15550693 TCGTCGGGGCACCATCGCAACAGCATCATCGGAGAACCTAACCGACGGCATTAGGGTTCCGACGA
195 TCGCCGGGGCACCATCGC-AGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGA
* * *
15550758 TCGGGGGGGCCCGGGGGGTCTACGCACATGATGTGCGATGGGTGCTGCTACTTGGCTCTTATATT
259 TC-GGGGGG-CCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * * * *
15550823 GGCCCCCCATCCCCCATCAAACCTTGAGAACTCACACCCCCTTAAAGATCATTTGAGATATTACA
322 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* *
15550888 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGAGGACATTTTTTTCAAATGGTCACAAAAT
387 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * *
15550953 CTTGTACACTTTGAGTTTGTAGCTGAATTTTTTTATGCATGCCAACAAAAATACAAGGATCACGT
452 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * *
15551018 CTACCAAGTTTGGGGCCAAACCTCCTTCCAAAAAAATTTTAAAATATCTCAAACCGTAAAAAGAT
517 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTT
** *
15551083 TAAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGG
582 TAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
15551148 GCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
647 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * *
15551213 AACCCACCTACCACCCTATCTATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
712 AACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCAGGCCGGCGTAGTGCCC
* * * *
15551278 GCCCGCCCG--C-AT-GTTTCGTCAGTTTGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATT
777 GCCCGCCCGCCCGGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* * *
15551339 AGACCAGACTGAGGGTTGTGGCAGCAGGATTGGCAGCACACAG-AGGGGACCCAA
842 AGACCAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAAGGGGACCCAC
** *
15551393 TCGAT-CCTCGGCTTGTGCATCCTGCCCCTCTTGGCC-GCT-AGCATGCCGCGCA--CT-TGTTT
1 TCGATCCCT-GGCTTACGCATCCCGCCCCTC-TGGCCGGCTGAGC--GCC-CGCACGCTCT-TTT
* * * *
15551452 CGTGGGTTGACATAGGCATACGAAGCTCATTCCCAGTCTAAGCATACGTAGGTTCTTTCCCAGTC
60 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA-GTTCTTTCCCAGTC
* ** * * *
15551517 TAAGATCGAACCGGATGGTGGGTTACTGACAGCACATGCTAGGCTC-AGCTATGTGCTGGTGCCG
124 TAAGATCGAA-TGGACCGAGGGTTGC-GACAGCACATGCTGGGCTCGAGC-ATGTGCTGGTGCCG
* * *
15551581 CATTTTTCTTCGCTGGGGCA-CATCGCCGGAGCATCATCGGAGAACCTGA-CGGTGGCATTGGGG
186 CATTTTTCTTCGCCGGGGCACCATCG-CAGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGG
* * *
15551644 TTCCAACGATCAGGGGGCCGGGGGGTGTACGTACATGATGTGCGATGGGTGCTGGTACTTGGCCC
250 TTCCGACGATCGGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
15551709 TTATAGTGGCCTCCTATCCTTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
315 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* *
15551774 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAATTGGAGACACTTTTTTCAAATGGTC
380 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
15551839 ACAAAATCTTGTACACTTC
445 ACAAAATCTTGTACACTTC
15551858 TACCAAGTTT
Statistics
Matches: 2740, Mismatches: 352, Indels: 121
0.85 0.11 0.04
Matches are distributed among these distances:
886 10 0.00
887 52 0.02
888 443 0.16
890 1 0.00
891 5 0.00
892 261 0.10
893 185 0.07
894 15 0.01
895 107 0.04
896 135 0.05
897 472 0.17
898 313 0.11
899 232 0.08
900 9 0.00
903 33 0.01
904 461 0.17
905 6 0.00
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.26
Consensus pattern (896 bp):
TCGATCCCTGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCTTTTCGTGGG
TTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCTTTCCCAGTCTAAGATC
GAATGGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTTCTT
CGCCGGGGCACCATCGCAGAGCATCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
GGGGGGCCGGGGGGTGTACGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
CAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTAAA
AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACC
CACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCAGGCCGGCGTAGTGCCCGCCC
GCCCGCCCGGTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGAC
CAGACTGAGGGTTGTGGCAGCAGGATCGACAGCACACAGAAGGGGACCCAC
Found at i:15553306 original size:737 final size:737
Alignment explanation
Indices: 15552339--15553796 Score: 2068
Period size: 737 Copynumber: 2.0 Consensus size: 737
15552329 CCGGCAATAT
* ** *
15552339 GGGGCCGGGGGGTGTGCGCACCTGATGTGTGATCGGTGCTGGTACTTGGCCCTTCTATTGGCCCC
1 GGGGCCGGGGGGTGTGCACACCTGATGTACGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* ** * * * *
15552404 TTATCGGTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTG
66 CTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
*
15552469 CTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
131 CTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
15552534 CACTTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAAAAAAAATAGAAGTATCACGTCCACCA
196 CACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAATATCACGTCCACCA
* * **
15552599 AGTTTGGGGCCAAAACTCCTTTCGAAAAAA-TTATAAAAAATCCTGAACTGCAAAAAGTTTCAAA
261 AGTTTGGGGACAAAACT-CTTTCCAAAAAAGTTATAAAAAATCCCAAACTGCAAAAAGTTTCAAA
* * * *
15552663 AATTGTGAAAAATAAAAAATGAGTCGTCTTGCCTTGAAACTTCCCGGGAAGGCTTAAGGGACCAT
325 AATTATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGGGAAGGATTAAGGGACCAT
* * * * *
15552728 TGTTTGAATTTACAAGCCATAAAAATGGGATTTGCACATAGAAATATGAAGATGTGCCTAAACCC
390 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCC
** *
15552793 ACCTACCAGCC-TATCAATCAATGGCTTGCGCATCCCGTCTCTCTGGCCTGCGTAGTGCCCGCCC
455 ACCTACCA-CCTTATCAATCAACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC
* * *
15552857 G-T-CCGCTCATTTCGTCGGTTGGCTTAGGCATACAGAGTTCATACCTAGTCTAAGATCAGACCA
519 GCTCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATACCCAGTCTAAGATCAGACCA
**
15552920 GACCGAGCATTGTGGCAGAAGGATCGACAGCACGTAGAAGGGGAACCC-GACCGATCCCCAACAT
584 GACCGAGCATTACGGCAGAAGGATCGACAGCACGTAG-AGGGGAACCCAG-CCGATCCCCAACAT
* * * * * *
15552984 GTGCATCACGCCTCTCT-GGTCGGCTGAGCA-CCGTACGCTCATTTCTTTGGGTTTGACTTAGGC
647 GCGCATCACGCCCCTCTAGCT-GGCTGAGCATCCGCACGCTCATTTC-GTGGG-TTGACTTAGAC
15553047 ATACGGATTGGAGGTGTCCGGCGGATCAG
709 ATACGGATTGGAGGTGTCCGGCGGATCAG
* * *
15553076 GGGGCCGGGGGGTGTGCATACAC-GATGTACGATGGGTGCTGGTGCTTGGCCCTTATATTGGCCC
1 GGGGCCGGGGGGTGTGCACAC-CTGATGTACGATCGGTGCTGGTACTTGGCCCTTATATTGGCCC
15553140 CCTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTT
65 CCTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTT
15553205 GCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
130 GCTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
** *
15553270 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAACCAAAATACAAATATCACGTCTACC
195 ACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAATATCACGTCCACC
* * *
15553335 AAGTTTGGGGACAAAACTGTTTCCAAAAAAGTTTTAAAAAATCCCAAACTGTAAAAAGTTTCAAA
260 AAGTTTGGGGACAAAACTCTTTCCAAAAAAGTTATAAAAAATCCCAAACTGCAAAAAGTTTCAAA
* *
15553400 AATTATGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGATTAAGGGACCAT
325 AATTATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGGGAAGGATTAAGGGACCAT
**
15553465 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTACCTAAACCC
390 TGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCC
* * *
15553530 ACCTACCACCTTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCG
455 ACCTACCACCTTATCAATCAACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
** * *
15553595 CCCTTCCGCCCGCTTGTTTCATCGATTGGCTTAGGCATACAGAGTTTATTCCCAGTCTAAGATCA
520 --C-T---CCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATACCCAGTCTAAGATCA
** * * * * * * *
15553660 GACCAGACCGAGGGTTACGGTAGTAGGATCGATAGCATGTAGAGGGGGACCCAGCTGATCCCCGA
579 GACCAGACCGAGCATTACGGCAGAAGGATCGACAGCACGTAGAGGGGAACCCAGCCGATCCCCAA
* * *
15553725 CTTGCGCATCCCGCCCCTCTAGCTGGCTGAGCATCCGCACGTTCATTTCGTGGGTTGACTTAGAC
644 CATGCGCATCACGCCCCTCTAGCTGGCTGAGCATCCGCACGCTCATTTCGTGGGTTGACTTAGAC
15553790 ATACGGA
709 ATACGGA
15553797 GTTCATTCCC
Statistics
Matches: 633, Mismatches: 74, Indels: 22
0.87 0.10 0.03
Matches are distributed among these distances:
736 12 0.02
737 456 0.72
738 1 0.00
741 1 0.00
743 17 0.03
744 47 0.07
745 99 0.16
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (737 bp):
GGGGCCGGGGGGTGTGCACACCTGATGTACGATCGGTGCTGGTACTTGGCCCTTATATTGGCCCC
CTATCCCTCATCAAACCTCAAGAACTCACACACCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
CTGCCAGTAGCCAATAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
CACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAAAAAAAATACAAATATCACGTCCACCA
AGTTTGGGGACAAAACTCTTTCCAAAAAAGTTATAAAAAATCCCAAACTGCAAAAAGTTTCAAAA
ATTATGAAAAATAAAAAATGAGTCGTCTTGCCATGAAACTTCACGGGAAGGATTAAGGGACCATT
GTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTACCTAAACCCA
CCTACCACCTTATCAATCAACAGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC
TCCCGCTCATTTCATCGATTGGCTTAGGCATACAGAGTTCATACCCAGTCTAAGATCAGACCAGA
CCGAGCATTACGGCAGAAGGATCGACAGCACGTAGAGGGGAACCCAGCCGATCCCCAACATGCGC
ATCACGCCCCTCTAGCTGGCTGAGCATCCGCACGCTCATTTCGTGGGTTGACTTAGACATACGGA
TTGGAGGTGTCCGGCGGATCAG
Found at i:15553825 original size:26 final size:26
Alignment explanation
Indices: 15553789--15553838 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
15553779 TTGACTTAGA
15553789 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15553815 CATACGGAGTTCATTCCCAGTCTA
1 CATACGGAGTTCATTCCCAGTCTA
15553839 TGATCGGACC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15554820 original size:24 final size:24
Alignment explanation
Indices: 15554787--15554857 Score: 133
Period size: 24 Copynumber: 3.0 Consensus size: 24
15554777 ATTTGAGATT
*
15554787 TTACAAGTTTGCTGCCAGTAGCCG
1 TTACAGGTTTGCTGCCAGTAGCCG
15554811 TTACAGGTTTGCTGCCAGTAGCCG
1 TTACAGGTTTGCTGCCAGTAGCCG
15554835 TTACAGGTTTGCTGCCAGTAGCC
1 TTACAGGTTTGCTGCCAGTAGCC
15554858 ATCAAATGGT
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
24 46 1.00
ACGTcount: A:0.18, C:0.25, G:0.27, T:0.30
Consensus pattern (24 bp):
TTACAGGTTTGCTGCCAGTAGCCG
Found at i:15555366 original size:26 final size:26
Alignment explanation
Indices: 15555336--15555388 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15555326 GATGACTTAG
15555336 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15555362 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15555388 G
1 G
15555389 ATCGGTCCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15557330 original size:26 final size:26
Alignment explanation
Indices: 15557301--15557353 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15557291 GTTGACTTAG
* *
15557301 GCATACGGAGTTCATTGCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15557327 GCATACGAAGTTTATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15557353 G
1 G
15557354 ATTGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.23, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15558242 original size:26 final size:26
Alignment explanation
Indices: 15558206--15558258 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15558196 GTTGACTTAG
15558206 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15558232 GCATATGGAGTTCATTCCCAGTGTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15558258 G
1 G
15558259 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15559134 original size:26 final size:26
Alignment explanation
Indices: 15559104--15559159 Score: 94
Period size: 26 Copynumber: 2.2 Consensus size: 26
15559094 TGGGTTGACT
* *
15559104 TAAGCATATGGAGTTCATTCCTAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15559130 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15559156 TAAG
1 TAAG
15559160 ATCAGACCAG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.29, C:0.21, G:0.20, T:0.30
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15559325 original size:901 final size:901
Alignment explanation
Indices: 15556443--15559876 Score: 4725
Period size: 901 Copynumber: 3.8 Consensus size: 901
15556433 TAGGCACACA
* * * * * * * **
15556443 GAGTTCATTCCCAGTCTAAGATCAGTCCGGACAGAGGGTTGCGACAGCACATTCT-AGCTTCGAA
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGC-TCGGG
* * *
15556507 CTTGTGCCGGTGCCGTATTTTTCTTCGTCGGGGCACCAT-------CA-C--CGGAGAACCTGAC
65 CATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCGCGGAGCATCATCGGAGAACCTGAC
* * * * * *
15556562 CAGCGGCATAGGGGTTCAGGCGATCGGGGGGGCC-GGGGGGTGTGCGCACATGAAGTGCGATGGG
129 CGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
15556626 TGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
194 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * **
15556691 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTTGCCATTAAAATGTCTGAAATGGAAACA
259 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
15556756 GTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTACCTGAATTTTTTTATGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
15556821 CAAAAAAAATACAAGGATCACGTCTATCAAGTTTGGGG-TCAAAACTCCTATCGAAAAAATTTTA
389 CAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTCAAAACTCCT-TCGAAAAAATTTTA
* * * * *
15556885 AGAAATCCTGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCGTG
453 AAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
*
15556950 AAACTTCACGTGAGGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
15557014 CACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACCGCTTGCGCATCCC
583 CACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * ** * * * *
15557079 GTCTCTCTGGCCGGCATGGTGCCCGCCCGCCTACCCATCCGCTCGTTTCGTTGATTGGGTTAGGC
648 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGC
* * * * * *
15557144 ATACAGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGAGTTGAGGCAGCAGGATCGGTAGC
713 ATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGAGTTGCGGCAGCAAGATCGGCAGC
* * * * *
15557209 ACGCAGAGGGGGACCCGGTCGATCCCTAGATTTCGCATCCCACCCCTCTGGTCGGCTGAGCGCCC
778 ATGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCC
*
15557274 GCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTGCCAGTCTAAGCATACG
843 GCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATACG
* * * * *
15557334 AAGTTTATTCCCAGTCTAAGATTGGACCGGACCGAGGGTTGCGAC-GACACATGCTGGGCTCGGG
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAG-CACATGCTGGGCTCGGG
* * * *
15557398 CATGTGCTGGTGCCGTATTTTTCTTCGTCGAGGCACCATCGCTTGAGCATCACCGGAGAACCTAA
65 CATGTGCTGGTGCCGCATTTTTCTTCGTCG-GGCACCATCGC-GGAGCATCATCGGAGAACCTGA
* *
15557463 CCAGCGACATTGGGGTTCCGACGATC-GGGGGGCCGGGGGGAGTGCGCGCACATGATGTGCGATG
128 CCGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATG
*
15557527 GGTGCTGGTACTT-GCCCTTATATTGGCCCGCTATCCCTCATCAAACCTCGAGAACTCACA-CCC
192 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
* *
15557590 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCCTTAAAGTGTCTGAAATGGGGA
257 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
15557655 CACTTTTTTCAAATGGTCACAAAAACTTGTACACTTCGATTTTTTAGCTGAATTTTTTTGTGCAT
322 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
15557720 GCCAGAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCT-AAAACTCCTTCCAAAAGAATTT
387 GCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTCAAAACTCCTTCGAAAA-AATTT
* * *
15557784 TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATTAAAAATAGAAAACGAGTCGTCTTGCCA
451 TAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
15557849 TTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
15557914 CACATACAAATATAAAGTTGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTCGCGCATC
581 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* *
15557979 CCGTTTCTC-GGCCGACGTAGTGCCCGCCCGCCCGCCATCCCACCCGCTCGTTTCGTCGGTTGGC
646 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG----CCCACCCGCTCGTTTCGTCGGTTGGC
* * * * * * * *
15558043 TTAGGCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGATTGAGGGTTACAGTAG-AAGGAT
707 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGAGTTGCGGCAGCAA-GAT
** * * * * *
15558107 CGGCAGCATATAGATGGGGACCCGGTCGATCCGTGACTTGCGCATCCCACCCATCTGGCCGGTTG
771 CGGCAGCATGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTG
* * *
15558172 AGCACCCACACGCTCCTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATA
836 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATT-CCAGTCTAAGCATA
*
15558237 TG
900 CG
* * * * *
15558239 GAGTTCATTCCCAGTGTAAGATCGGACCAGACTGAGGGTTGAGGTAGCACATGCTCGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
15558304 ATGTGCTGGT-CCACATTTTTCTTCGCTGGGGCACCATCGCCGGAGCATCATCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCG-TCGGGCACCATCG-CGGAGCATCATCGGAGAACCTGAC
* * * *
15558368 CGGCGACATTGGGGTTCTGGCGATCGGGGGGGCTGGGAGGGGTGTGCGCACATGATGTGCGATGT
129 CGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGG-GGGGTGTGCGCACATGATGTGCGATGG
* *
15558433 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCATACCCCT
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* *
15558498 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAA-TGTCTGAAATAGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
15558562 ACTTTTTTCAAATGGTCACAAAA-CTTGTACACTTTGAG-TTTTAGCTGAATTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * *
15558625 -CAAACAAAAATACAACGATCATGTCTACCAAGTTTGGGGCTGAAAA-TGCTTCTGAAAAAATTT
388 CCAAA-AAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTCAAAACTCCTTC-GAAAAAATTT
* * ** *
15558688 TAAAAAATCCCGAACTACAAAAAGTTTTGAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCA
451 TAAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
*
15558753 TGAAACTTCACGTCAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
516 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* *
15558818 CACACAGAAATATGAAGATGTGCCTAAACCCACATACCACCCTATCGATCGACGGCTTGCGCATC
581 CACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * *
15558883 CTGTCTCTCTGGCCGGCGTAGTGCCCGCCTGCCCGTCCGCCTGCTCGTTTCGTCGGTTAGCTTAG
646 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * * *
15558948 CCATATGGAGTTCATTCCCAGTCTAAGATTGGATCAGATCGAGTGTTGCGGCGGCAAGATTGGCA
711 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGAGTTGCGGCAGCAAGATCGGCA
* * ** *
15559013 GCATGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCTGCCCCTCTGGCCGACTGAGCGC
776 GCATGCAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGC
* * *
15559078 CCGCACGCTCGTTTCATGGGTTGACTTAAGCATATGGAGTTCATTCCTAGTCTAAGCATACG
841 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCC-AGTCTAAGCATACG
* *
15559140 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCTGGC
1 GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * *
15559205 ATGTGCTTGTGCCGCATTTTTCTTTGTCAGGGCACCAACGTCGGAGCATCGTCAGAGAACCTGAT
66 ATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATCG-CGGAGCATCATCGGAGAACCTGAC
* * * * *
15559270 CGGTGGCATT-GGGTTCCGATGATCGGGGCGGCCGGGGGGGTTGTGCGCACATGATGTGTGATGG
129 CGGCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGG
* *
15559334 GTGCTGGTACTTGGCCATTATATTGGCCCCCTATCCCTCACCAAACCTCGAGAACTCACACCCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
* * *
15559399 TGAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTTAAATGGGGAC
258 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* *
15559464 ACCTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * ** *
15559529 CCAACAAAAATATAAGGATCATGTCTACCAAGTTTGGTTC-CAAAACTCCTTCTGAAAAAAATTT
388 CCAAAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTCAAAACTCCTTC-GAAAAAATTTT
* *
15559593 GAAAAATCCCGAACCATAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
452 AAAAAATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
15559658 GAAACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACATGCCATAAAAATGGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * * *
15559723 ACAAAGAAATATGAAGATGTGCCTAAA-CC-CCTACCACCCTATCGGTCCATGGCATGCACATCC
582 ACACAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
*
15559786 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGTTCGTTTCGTCGGTTGGCTTAGG
647 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGG
15559851 CATACGGAGTTCATTCCCAGTCTAAG
712 CATACGGAGTTCATTCCCAGTCTAAG
15559877 CATATGGAGT
Statistics
Matches: 2242, Mismatches: 256, Indels: 79
0.87 0.10 0.03
Matches are distributed among these distances:
890 2 0.00
891 84 0.04
892 2 0.00
899 2 0.00
900 13 0.01
901 710 0.32
902 357 0.16
903 57 0.03
904 537 0.24
905 341 0.15
906 87 0.04
907 50 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCACCATCGCGGAGCATCATCGGAGAACCTGACCG
GCGACATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCTCAAAACTCCTTCGAAAAAATTTTAAAA
AATCCCGAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACAC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCACCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGAGAGTTGCGGCAGCAAGATCGGCAGCATG
CAGAGGGGGACCCGGTCGATCCCTGGCTTGCGCATCCCACCCCTCTGGCCGGCTGAGCGCCCGCA
CGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCAGTCTAAGCATACG
Found at i:15559886 original size:26 final size:26
Alignment explanation
Indices: 15559850--15559902 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15559840 GTTGGCTTAG
15559850 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15559876 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15559902 G
1 G
15559903 ATCAGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15561774 original size:26 final size:26
Alignment explanation
Indices: 15561738--15561790 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15561728 TTGACTTAGC
15561738 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
15561764 CATACGGAGTTCATTCCTAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15561790 C
1 C
15561791 TCGCGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.26, G:0.19, T:0.28
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15562795 original size:159 final size:158
Alignment explanation
Indices: 15562462--15562818 Score: 394
Period size: 159 Copynumber: 2.3 Consensus size: 158
15562452 TCGTTTCGTC
* * * **
15562462 GGTTGGCTTAGGCATAAGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTGCAGGTA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACAGACA
* * * * * *
15562527 GCAAGATCGACAGCACGCAGAGGGGGACCTGGCCGATCCTCGGCTTACTCATCCCCCCTACGGCC
66 GCAAGATCGACAACACGCAGAGCGGGACCCGGCCGATCCCCGACTTACGCATCCCCCCTACGGCC
* ** **
15562592 GGCTGAGCGCCCGCACTTTCCTTTTATG
131 AGCTGAGCGCCCGCACACTCCTTCCATG
* * * * *
15562620 GGTTGACCTAGGCATACGGAGTTCATTCCCAGTATAAGATTGGATCGGATTGAGGGTTAC-GACA
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACAGACA
* * ** *
15562684 GCAGGATCGACAACACGCAGCGCGGGACCCGGTTGATCCCCGACTTGCGCATCTCGCCCCTTA-G
66 GCAAGATCGACAACACGCAGAGCGGGACCCGGCCGATCCCCGACTTACGCATC-C-CCCC-TACG
* * *
15562748 GCCAGCTGAGCGCCTGTACACTCGTTCCATG
128 GCCAGCTGAGCGCCCGCACACTCCTTCCATG
* *
15562779 GGTTGACTTAGGCATACGAAGTTCATTCCCAATCTAAGAT
1 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
15562819 CGGGACTGGA
Statistics
Matches: 163, Mismatches: 33, Indels: 5
0.81 0.16 0.02
Matches are distributed among these distances:
157 44 0.27
158 53 0.33
159 64 0.39
160 2 0.01
ACGTcount: A:0.22, C:0.28, G:0.28, T:0.23
Consensus pattern (158 bp):
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACTGAGGGTTACAGACA
GCAAGATCGACAACACGCAGAGCGGGACCCGGCCGATCCCCGACTTACGCATCCCCCCTACGGCC
AGCTGAGCGCCCGCACACTCCTTCCATG
Found at i:15566408 original size:901 final size:899
Alignment explanation
Indices: 15564203--15569431 Score: 6325
Period size: 900 Copynumber: 5.8 Consensus size: 899
15564193 GTTGACTTAG
* ** * * * *
15564203 GCATACGAAGTTCATTCCCAGTCTAAGATCGGACTGGACCGAGGGTTGTGGTAGCACTTACTGGC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * **
15564268 CTCGAGCATGTGCTGGTGCCACA-TTTTGATCGTC-GGG---CA----C--A--ATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
15564320 ACCTGACTGACGGCATTGGGGTTCCAACGATCGGGGGGACCGGGGGGTGTGCACACATGATGTGC
131 ACCTGACCGACGGCATAGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
* * * * *
15564385 AATGGGTGCTGGTACTTGGCACTTATATTGGCCCCCTATCCCTCTTCAAACCTCGATAACTCACT
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * * *
15564450 CCCCCTTAAAGAGCTTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCCTTAAAATGTTTAAAATG
261 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15564515 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTGTTTTGT
326 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTTGT
* * * *
15564580 GAAAGCCAACAAAAATACAAGGATCAC--AT-CTAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* *
15564642 TTTTAAAAAATCCCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
*
15564707 CCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
15564772 TGGCATGTAGAAATATGAAGACGTGCCTAAACCCACCTACCACCGTATCGATCCACGGCTTGCGT
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
15564837 ATCCCGTCTCTCTGGTCGGCGTAGTGCCTGCCCGCCCGCCTGCCCGCTCGCTCGTTTCGTCGATT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCC-GCCCGCCCGCC-G--C-C-CGCTCGTTTCGTCGGTT
* * * *
15564902 GGCTTAGGCATATGGAGTTCATTCCCAGTATAAGATCCGACCAGACCGAGGGTTGTGGCAGCAGG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTAT-GCAGCAGG
* * * * * * *
15564967 ATCGGCAACATGTAGAGGGGGACTCAGTCGATCCCCGACTTGCGCATCCCGCCCTTCTGGCCGGT
773 ATCGGCAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGC
* * * * *
15565032 TGAGCGCCCGCACGCTTGTTTTGTGGGTTGACTCAGGCATACGGAGTTCCTTCCCAGTCTAA
838 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * ** * ** ** **
15565094 GCATACGCAGTTCAATCCCAGTAGAAGATCAGACTGGATTGAGGGTT-TCAACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGT-GGCAGCACATGCTGG
* *
15565158 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCACCATTGTCGGAGCAACGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
15565222 AACATGACCGACGGAATTAGGGTTTCGA-CGATCGGGGGGGCCAGGGGGTGTGCACACATGATGT
130 AACCTGACCGACGGCA-TAGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGT
** * * *
15565286 GCGATGGGTGCTCATACTTGGCCCTTATATTGGCCCCCTATCCCTCTTCAAACTTTGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15565351 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTTTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
*
15565416 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCTGAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATT-TTTT
* * * * *
15565481 GTGCATGCCAACAAAAATAAAAGGATCACTTTTACCAAG-TTGAGGGCCAAAACTCCTTCCAAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTG-GGGCCAAAACTCCTTCCGAAA
* * *
15565545 AAATTTTAAAAAATCTCG-ACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTC
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15565609 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGAATGAATTTACAAGCCATAAAAATGG
517 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
15565674 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
582 CATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * * * *
15565739 TGCATCCCTTCTCTCTGGCGGGCGTAGTGCACGCCCGTCCGCCAGCCAGCTCGTTTCGTCAGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGC-CGCCCGCCCGCC-GCCCGCTCGTTTCGTCGGTTG
* ** * * *
15565804 GCTTTGGTGTACGGAGTTCATTCCCAGTCTCAGATCAGACCAAACCAAGGGTTATGCAGCAGGAT
710 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGCAGCAGGAT
* * * * *
15565869 CAGCAGCATGCCGAGGGGGACCCGGTCGATCCCCGGC-TGCGCATCCCGCCCCTCTGGCCGGCTC
775 CGGCAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTG
* *
15565933 AGCGCCCGCACGCTCGTTTCATGGGTTGACTTAGGCGTACAGAGTTCATTCCCAGTCTAA
840 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
15565993 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * *
15566058 CTTGGGCATTTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
15566123 ACCTGATCGGCGGCATAGGGGTTCCAGCGATC-GAGGGGCCGGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGACGGCATAGGGGTTCCAGCGATCGGGGGGGCC-GGGGGGTGTGCACACATGATGTG
* *
15566187 TGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCTCGAGAACTCA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCCTATCCCTCATCAAACCTCGAGAACTCA
15566252 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
15566317 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAATTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-AATTTTTT
*
15566382 GTGCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAGAA-TCCATCCGAAA
388 GTGCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAA-AACTCCTTCCGAAA
** * * *
15566446 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATTAAAAAATAGAAAATGAGTCGT
452 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC-GTGAAAAATAGAAAACGAGTCGT
* *
15566511 CTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCACTGTATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * * * * *
15566576 GCATTGGCACACAAAAATATTAAGATGTGCCTAAACCCACCTACTACTCTATCGATCCATGGCTT
581 GCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * *
15566641 GCGCATCCCATCTCTCTGGCAGACGTAGTGTCCGCCCGCCCGTCCGCCCGCTCATTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTT
* * * * * * * *
15566706 GGCTTACGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGATCAAGGGCTACGGCAGCAGG
709 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTA-TGCAGCAGG
* * * * *
15566771 ATCGGCAAGCACGTAGAGCAGGAACCCAGCCGATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCG
773 ATCGGC-AGCACGCAGAG-GGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCG
* *
15566836 GCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATT-CCAGTCTAA
836 GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * *
15566899 G-ATACAGAGTTCTTTCCCAGTATAAGATCGGATCAGA-C--GGG-T-T-GCTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGC-AGCACATGCTGG
* ** * * **** * * *
15566957 GCTTGGAATGTC-TGTGCTTTTTCGGGCACTGGGAGCATGGTGAGAACCTGACGCGCATTGTTCA
65 GCTCGG---G-CATGTGCTGGTGC-CGCA-T-TTTTC-T--T-CG--TC-G--GGGCA-----C-
* ** * * * *
15567021 CTTCACCTGGGGCACATCGCACGGAGAACATCGGACCACGACGGCATTGGGGATCC--C-AT-GT
108 CATCGTC-GGAG--CATCGC-CGGAGAAC--CTGA-C-CGACGGCATAGGGGTTCCAGCGATCG-
*** * * * * *
15567082 CATGGGTCGAGGGTGTCTGCA-ACATGATGTACGATAGGTGCTGGTACTTGGCCCTTATATTGGC
164 GGGGGGCCG-GGGGGTGTGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
15567146 CACCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
228 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * *
15567211 TTGCTACCAGTAGCCATTAATGTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTT
293 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
15567276 ATACACTTCGGGTTTTTAGCTGAATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
358 GTACACTTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTATA
* * **
15567341 CCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTG
422 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCA
* *
15567406 AAAATCGTGAAAAATAGAAAACGAGTTGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACC
487 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
15567471 ATTGTATGAATTTACAAGCCATTAAAATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAAC
552 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAAC
* * * * *
15567536 CCACCTGCCACCCTATCGATCCACAGCTTACGCATCTCGTCTCTCTGGCCGGCGTTGTGCCGCCC
617 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCGCCC
* * * * * *
15567601 GCCCACCCGCCCGCTCGTTTCATCGTTTGGCTTAGGCATGCGGAGTTCATTCCAAGTCTAAGATT
682 GCCC-GCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATC
* ** * * * * **
15567666 GGACCAGATTGAGGGTTGTGGCAACAGGATCGGAAGCACGCAGAGGGGGACCCGGTCGATCCCTA
746 AGACCAGACCGAGGGTTAT-GCAGCAGGATCGGCAGCACGCAGAGGGGGACCCAGTCGATCCCCG
* * * *
15567731 GCTTGCGCATTCCGCCCCTTTGGCCGGCTGAACGCCCGTACGCTCGTTTCGTGGGTTGACTTAGG
810 GCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
15567796 CATA-GGAGTTCATTCCTAGTCTAA
875 CATACAGAGTTCATTCCCAGTCTAA
* * * **** *
15567820 GCATATGGAGTTCATTCCC-GATCTAATATCGGATCAGACCGAGGGTTGCAATAGCACAAGCTGG
1 GCATACGGAGTTCATTCCCAG-TCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGG
* * * * *
15567884 GCTCGAGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGTCGCAGCATCGTCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
15567949 AACCTGACCGACGGCATTGGGGTTCC-GACAATCGGGGGTGCCGGGGGGGTTTGCGCACATGATG
130 AACCTGACCGACGGCATAGGGGTTCCAG-CGATCGGGGGGGCC-GGGGGGTGTGCACACATGATG
*
15568013 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAATCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* *
15568078 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGTCAGTAGCCATTAAAGTGTCTAAA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15568143 ATGGGGACAC-TTTTTCAAATGGTCACAAAATCTTGGACACTTCGAGTTTTTAGCTGAATTTTTT
323 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTT
* * * * *
15568207 TGTGTACGCCAAAAAAAATACAAGGAT--CGGACTACCAAGTTTGGGGCCAAAACTCCATCTGAA
387 TGTGCATGCCAAAAAAAATACAAGGATCACGTA-TACCAAGTTTGGGGCCAAAACTCCTTCCGAA
*
15568270 AAAATTTTAGAAAATCCCGAACCG-AAGAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
451 AAAATTTTAAAAAATCCCGAACCGCAA-AAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCG
15568334 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
515 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT
** * *
15568399 GGCATTGGCACACATAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCT
580 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * * *
15568464 TGCACATCTCATCTCT-TGGCCGGCATAGTACCCGCCCGCCCACCCGCCCGCTTGTTTCATCGGT
645 TGCGCATCCCGTCTCTCTGGCCGGCGTAGT-GCCGCCCGCCC-GCCGCCCGCTCGTTTCGTCGGT
* ** * * **
15568528 TGGATTAGGCATATAGAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCAG
708 TGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTT-ATGCAGCAG
* * * * * * ** *
15568593 GATCGACACCACGCAGAGGGTGACCCAGCCGATCCCCGGCTTACGCATCCTGCCCCTCCAGCCGA
772 GATCGGCAGCACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGG
* * * * *
15568658 CTGAGCACCCGCTCGCTCATTTCATGGGTTGACTTAGGCATATAGAGTTCATTCCCAGTCT--
837 CTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* ** *
15568719 --AT-----G---A-T--C-G-----GA-C---CTA-ACCGAGGGTTACGGCAGCACTTGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
* * * * * * *
15568760 CTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTTGGGGCACCATCATCTGAGCATCACAGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
15568825 ACTTGACCGGCGGCATTGAGGTTCC-GATGATCGGGGGGGCCGGGGGGTGTGCACACACGATGTG
131 ACCTGACCGACGGCATAGGGGTTCCAG-CGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTG
* * * *
15568889 CGATGGGTTCTGGTACTTGGCTCTTATATTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAG
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15568954 A-CCCCTTAAAAAGCATTTGAGATTTTACAGGTTTGCTG-CAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15569017 GGGGACACTTTTTTCAAATGGTCAC-AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTAT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGT
* * *
15569081 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTT-GGACCAAAAATCCTTCCGAAAAAA
390 GCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * * *
15569145 TTTTAAAAAATCCCAAACAGCAAAAAGTTTCAAAAATCATGAAAAACAGAAAACGGGTCGTCTTG
455 TTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
15569210 CCATGAAACTTCACGTGAAGGTTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* *
15569275 TGACATGCAGAAATATGAAGATGTGCCTAAA-CCACCTA-CACCCTATCGATCGACGGCTTGCGC
585 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* *
15569338 ATCCCGTCTCTCTGGCCGGCGTGGTGCCCGCCCG-CCGTCCGCCCGTTCGTTTCGTCGGTTGGCT
650 ATCCCGTCTCTCTGGCCGGCGTAGTG-CCGCCCGCCCG-CCGCCCGCTCGTTTCGTCGGTTGGCT
*
15569402 TAGGCATAGGGAGTTCATTCCCAGTCTAAG
713 TAGGCATACGGAGTTCATTCCCAGTCTAAG
15569432 CATACCGAGT
Statistics
Matches: 3755, Mismatches: 481, Indels: 226
0.84 0.11 0.05
Matches are distributed among these distances:
869 83 0.02
870 25 0.01
871 195 0.05
872 74 0.02
873 54 0.01
874 81 0.02
875 112 0.03
876 1 0.00
879 1 0.00
880 1 0.00
886 2 0.00
888 1 0.00
889 1 0.00
890 1 0.00
891 71 0.02
892 13 0.00
895 2 0.00
897 2 0.00
898 17 0.00
899 196 0.05
900 543 0.14
901 383 0.10
902 180 0.05
903 510 0.14
904 28 0.01
905 253 0.07
906 73 0.02
907 74 0.02
909 1 0.00
910 1 0.00
912 5 0.00
913 1 0.00
914 1 0.00
915 5 0.00
917 1 0.00
918 1 0.00
920 11 0.00
921 93 0.02
922 43 0.01
923 88 0.02
924 178 0.05
925 260 0.07
926 42 0.01
927 32 0.01
929 15 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (899 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGTGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGACGGCATAGGGGTTCCAGCGATCGGGGGGGCCGGGGGGTGTGCACACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
CATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAAT
TTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCGCCCGCCCGCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTATGCAGCAGGATCGGCAG
CACGCAGAGGGGGACCCAGTCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:15566908 original size:24 final size:25
Alignment explanation
Indices: 15566876--15566926 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
15566866 TGACTTAGGC
* *
15566876 ATACTGAGTTCATT-CCAGTCTAAG
1 ATACAGAGTTCATTCCCAGTATAAG
*
15566900 ATACAGAGTTCTTTCCCAGTATAAG
1 ATACAGAGTTCATTCCCAGTATAAG
15566925 AT
1 AT
15566927 CGGATCAGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 12 0.52
25 11 0.48
ACGTcount: A:0.31, C:0.20, G:0.16, T:0.33
Consensus pattern (25 bp):
ATACAGAGTTCATTCCCAGTATAAG
Found at i:15567356 original size:925 final size:926
Alignment explanation
Indices: 15566177--15567886 Score: 2576
Period size: 925 Copynumber: 1.8 Consensus size: 926
15566167 GGGTGTGCGC
** * * *
15566177 ACATGATGTGTGATGGGTGCTGGTATTTGGCCCTTATATTGGCCCCCCTATCCCTCATCAAACCT
1 ACATGATGTACGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCACCTATCCCTCATCAAACCT
*
15566242 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
66 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
*
15566307 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
131 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCT
15566372 GAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAGAA-T
196 GAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAA-AACT
*
15566436 CCATCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATTAAAAAATAGAA
260 CCATCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATC-GTAAAAAATAGAA
* * *
15566501 AATGAGTCGTCTTGCCATGAAACTTCACGTGAAGTCTTAAGGGACCACTGTATGAATTTACAAGC
324 AACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGC
* * *
15566566 CATAAAAATGGCATTGGCACACAAAAATATTAAGATGTGCCTAAACCCACCTACTACTCTATCGA
389 CATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
** * **
15566631 TCCATGGCTTGCGCATCCCATCTCTCTGGCAGACGTAGTGTCCGCCCGCCCGTCCGCCCGCTCAT
454 TCCACAGCTTACGCATCCCATCTCTCTGGCAGACGTAGTG-CCGCCCGCCCACCCGCCCGCTCAT
* * *
15566696 TTCGTCGGTTGGCTTACGCATACGAAGTTCATTCCCAGTCTAAGATCAAACCGGATCAAGGGCTA
518 TTCATCGGTTGGCTTACGCATACGAAGTTCATTCCAAGTCTAAGATCAAACCAGATCAAGGGCTA
* *
15566761 CGGCAGCAGGATCGGCAAGCACGTAGAGCAGGAACCCAGCCGATCCCCT-GCTTGCGCATCCCGC
583 CGGCAACAGGATCGG-AAGCACGCAGAG-AGGAACCCAGCCGAT-CCCTAGCTTGCGCATCCCGC
* *
15566825 CCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACTGAGTTCATT
645 CCCTCTGGCCGGCTGAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATA-GGAGTTCATT
*
15566890 CC-AGTCTAAG-ATACAGAGTTCTTTCCC-AGTATAAGATCGGATCAGA-C-GGGTTGC-TAGCA
709 CCTAGTCTAAGCATACAGAGTTCATTCCCGA-TATAAGATCGGATCAGACCAGGGTTGCATAGCA
*
15566949 CATGCTGGGCTTGGAATGTCTGTGCTTTTTCGGGCACTGGGAGCATGGTGAGAACCTGACGCGCA
773 CAAGCTGGGCTTGGAATGTCTGTGCTTTTTCGGGCACTGGGAGCATGGTGAGAACCTGACGCGCA
15567014 TTGTTCACTTCACCTGGGGCACATCGCACGGAGAACATCGGACCACGACGGCATTGGGGATCCCA
838 TTGTTCACTTCACCTGGGGCACATCGCACGGAGAACATCGGACCACGACGGCATTGGGGATCCCA
15567079 TGTCATGGGTCGAGGGTGTCTGCA
903 TGTCATGGGTCGAGGGTGTCTGCA
15567103 ACATGATGTACGATAGGTGCTGGTACTTGGCCCTTATATTGG-CCACCTATCCCTCATCAAACCT
1 ACATGATGTACGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCACCTATCCCTCATCAAACCT
*
15567167 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAT
66 CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
* *
15567232 GTGTCTGAAATGGGGACGCTTTTTTCAAATGGTCACAAAATCTTATACACTTCGGGTTTTTAGCT
131 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCT
* *
15567297 G-AATGTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT
196 GAAAT-TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACT
* * * *
15567361 CCTTTCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAA
260 CCATCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAA
* *
15567426 ACGAGTTGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
325 ACGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCC
* *** * *
15567491 ATTAAAATGGCATTGGCATGGAGAAATATGAAGATGTGCCTAAACCCACCTGCCACCCTATCGAT
390 ATAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * * *
15567556 CCACAGCTTACGCATCTCGTCTCTCTGGCCGGCGTTGTGCCGCCCGCCCACCCGCCCGCTCGTTT
455 CCACAGCTTACGCATCCCATCTCTCTGGCAGACGTAGTGCCGCCCGCCCACCCGCCCGCTCATTT
* * * * *** ** * **
15567621 CATCGTTTGGCTTAGGCATGCGGAGTTCATTCCAAGTCTAAGATTGGACCAGATTGAGGGTTGTG
520 CATCGGTTGGCTTACGCATACGAAGTTCATTCCAAGTCTAAGATCAAACCAGATCAAGGGCTACG
* * * * * *
15567686 GCAACAGGATCGGAAGCACGCAGAGGGGGACCCGGTCGATCCCTAGCTTGCGCATTCCGCCCCTT
585 GCAACAGGATCGGAAGCACGCAGAGAGGAACCCAGCCGATCCCTAGCTTGCGCATCCCGCCCCTC
* *
15567751 TGGCCGGCTGAACGCCCGTACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCCTAGT
650 TGGCCGGCTGAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCCTAGT
** * *
15567816 CTAAGCATATGGAGTTCATTCCCGATCTAATATCGGATCAGACCGAGGGTTGCAATAGCACAAGC
715 CTAAGCATACAGAGTTCATTCCCGATATAAGATCGGATCAGACC-AGGGTTGC-ATAGCACAAGC
15567881 TGGGCT
778 TGGGCT
15567887 CGAGCATGTG
Statistics
Matches: 698, Mismatches: 75, Indels: 21
0.88 0.09 0.03
Matches are distributed among these distances:
920 15 0.02
921 83 0.12
922 40 0.06
923 87 0.12
924 164 0.23
925 256 0.37
926 38 0.05
927 15 0.02
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.26
Consensus pattern (926 bp):
ACATGATGTACGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCACCTATCCCTCATCAAACCT
CGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAA
GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTATACACTTCGAGTTTTTAGCT
GAAATTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTATACCAAGTTTGGGGCCAAAACTC
CATCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCGTAAAAAATAGAAAA
CGAGTCGTCTTGCCATAAAACTTCACGTGAAGGCTTAAGGGACCACTGTATGAATTTACAAGCCA
TAAAAATGGCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
CACAGCTTACGCATCCCATCTCTCTGGCAGACGTAGTGCCGCCCGCCCACCCGCCCGCTCATTTC
ATCGGTTGGCTTACGCATACGAAGTTCATTCCAAGTCTAAGATCAAACCAGATCAAGGGCTACGG
CAACAGGATCGGAAGCACGCAGAGAGGAACCCAGCCGATCCCTAGCTTGCGCATCCCGCCCCTCT
GGCCGGCTGAACACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATAGGAGTTCATTCCTAGTC
TAAGCATACAGAGTTCATTCCCGATATAAGATCGGATCAGACCAGGGTTGCATAGCACAAGCTGG
GCTTGGAATGTCTGTGCTTTTTCGGGCACTGGGAGCATGGTGAGAACCTGACGCGCATTGTTCAC
TTCACCTGGGGCACATCGCACGGAGAACATCGGACCACGACGGCATTGGGGATCCCATGTCATGG
GTCGAGGGTGTCTGCA
Found at i:15567844 original size:26 final size:25
Alignment explanation
Indices: 15567795--15567845 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 25
15567785 GTTGACTTAG
*
15567795 GCATAGGAGTTCATTCCTAGTCTAA
1 GCATAGGAGTTCATTCCGAGTCTAA
15567820 GCATATGGAGTTCATTCCCGA-TCTAA
1 GCATA-GGAGTTCATT-CCGAGTCTAA
15567846 TATCGGATCA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
25 5 0.22
26 15 0.65
27 3 0.13
ACGTcount: A:0.27, C:0.22, G:0.20, T:0.31
Consensus pattern (25 bp):
GCATAGGAGTTCATTCCGAGTCTAA
Found at i:15570041 original size:27 final size:27
Alignment explanation
Indices: 15570006--15570079 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
15569996 TTTTCTTTTG
*
15570006 TATTTTATGTAT-TTTATTATTTATTAT
1 TATTATATGTATATTT-TTATTTATTAT
15570033 TATTATATGTATATTTTTATTTATTTATT
1 TATTATATGTATATTTTTATTTA-TTA-T
*
15570062 TATT-TTTGTAATATTTTT
1 TATTATATGT-ATATTTTT
15570080 TTATTTATCT
Statistics
Matches: 41, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
27 18 0.44
28 10 0.24
29 13 0.32
ACGTcount: A:0.26, C:0.00, G:0.04, T:0.70
Consensus pattern (27 bp):
TATTATATGTATATTTTTATTTATTAT
Found at i:15570060 original size:31 final size:30
Alignment explanation
Indices: 15570017--15570093 Score: 84
Period size: 31 Copynumber: 2.5 Consensus size: 30
15570007 ATTTTATGTA
*
15570017 TTTTA-TTATTTATTATTATTATATGTATAT
1 TTTTATTTATTTATTATTATTATA-ATATAT
* * *
15570047 TTTTATTTATTTATTTATTTTTGTAATATTT
1 TTTTATTTATTTA-TTATTATTATAATATAT
15570078 TTTTATTTATCTTATT
1 TTTTATTTAT-TTATT
15570094 GAATTATCTG
Statistics
Matches: 40, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
30 5 0.12
31 23 0.57
32 12 0.30
ACGTcount: A:0.25, C:0.01, G:0.03, T:0.71
Consensus pattern (30 bp):
TTTTATTTATTTATTATTATTATAATATAT
Found at i:15570082 original size:27 final size:28
Alignment explanation
Indices: 15570015--15570093 Score: 81
Period size: 28 Copynumber: 2.8 Consensus size: 28
15570005 GTATTTTATG
*
15570015 TATTTTATTATTTATTATTATTATATGTA
1 TATTTTTTTATTTA-TATTATTATATGTA
*
15570044 TATTTTTATTTATTTAT-TTATT-TTTGTAA
1 TA-TTTT-TTTATTTATATTATTATATGT-A
*
15570073 TATTTTTTTATTTATCTTATT
1 TATTTTTTTATTTATATTATT
15570094 GAATTATCTG
Statistics
Matches: 44, Mismatches: 2, Indels: 9
0.80 0.04 0.16
Matches are distributed among these distances:
27 9 0.20
28 13 0.30
29 10 0.23
30 5 0.11
31 7 0.16
ACGTcount: A:0.25, C:0.01, G:0.03, T:0.71
Consensus pattern (28 bp):
TATTTTTTTATTTATATTATTATATGTA
Found at i:15570114 original size:36 final size:31
Alignment explanation
Indices: 15570015--15570117 Score: 81
Period size: 31 Copynumber: 3.3 Consensus size: 31
15570005 GTATTTTATG
* *
15570015 TATTTTATTATTTA-TTATT-ATTATATGT-A
1 TATTTTTTTATTTATTTATTAATT-TCTGTAA
* *
15570044 TA--TTTTTATTTATTTATTTATTTTTGTAA
1 TATTTTTTTATTTATTTATTAATTTCTGTAA
15570073 TATTTTTTTATTTATCTTATTGAATTATCTGTTAA
1 TATTTTTTTATTTAT-TTATT-AATT-TCTG-TAA
15570108 TAATTTTTTT
1 T-ATTTTTTT
15570118 CTCTCTTGTT
Statistics
Matches: 60, Mismatches: 4, Indels: 13
0.78 0.05 0.17
Matches are distributed among these distances:
27 9 0.15
28 9 0.15
29 8 0.13
31 11 0.18
32 5 0.08
33 3 0.05
34 3 0.05
35 4 0.07
36 8 0.13
ACGTcount: A:0.26, C:0.02, G:0.04, T:0.68
Consensus pattern (31 bp):
TATTTTTTTATTTATTTATTAATTTCTGTAA
Found at i:15571108 original size:17 final size:16
Alignment explanation
Indices: 15571088--15571142 Score: 69
Period size: 14 Copynumber: 3.4 Consensus size: 16
15571078 TTTATCTTTA
15571088 TTTTATTTTCATTTTT
1 TTTTATTTTCATTTTT
*
15571104 GTTTTACTTTTCTTTTTT
1 -TTTTA-TTTTCATTTTT
15571122 TTTTA-TTT-ATTTTT
1 TTTTATTTTCATTTTT
15571136 TTTTATT
1 TTTTATT
15571143 ATTCTGTTTT
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
14 10 0.29
15 4 0.12
17 10 0.29
18 10 0.29
ACGTcount: A:0.11, C:0.05, G:0.02, T:0.82
Consensus pattern (16 bp):
TTTTATTTTCATTTTT
Found at i:15571109 original size:22 final size:22
Alignment explanation
Indices: 15571062--15571139 Score: 63
Period size: 22 Copynumber: 3.6 Consensus size: 22
15571052 TTACATTAGG
* * * *
15571062 TTTATTTAATATTCTTTTTATC
1 TTTATTTTATTTTCTTTTTGTA
15571084 TTTATTTTATTTTCATTTTTGT-
1 TTTATTTTATTTTC-TTTTTGTA
*
15571106 TTTACTTTTCTTTT-TTTTT-TA
1 TTTA-TTTTATTTTCTTTTTGTA
*
15571127 TTTATTTTTTTTT
1 TTTATTTTATTTT
15571140 ATTATTCTGT
Statistics
Matches: 48, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
20 9 0.19
21 9 0.19
22 16 0.33
23 14 0.29
ACGTcount: A:0.14, C:0.06, G:0.01, T:0.78
Consensus pattern (22 bp):
TTTATTTTATTTTCTTTTTGTA
Found at i:15571145 original size:17 final size:16
Alignment explanation
Indices: 15571076--15571142 Score: 64
Period size: 17 Copynumber: 4.1 Consensus size: 16
15571066 TTTAATATTC
*
15571076 TTTTTATCTTTATTTTA
1 TTTTTAT-TTTTTTTTA
*
15571093 TTTTCATTTTTGTTTTA
1 TTTTTATTTTT-TTTTA
* *
15571110 CTTTTCTTTTTTTTT-
1 TTTTTATTTTTTTTTA
*
15571125 TATTTATTTTTTTTTA
1 TTTTTATTTTTTTTTA
15571141 TT
1 TT
15571143 ATTCTGTTTT
Statistics
Matches: 39, Mismatches: 9, Indels: 5
0.74 0.17 0.09
Matches are distributed among these distances:
15 12 0.31
16 8 0.21
17 19 0.49
ACGTcount: A:0.12, C:0.06, G:0.01, T:0.81
Consensus pattern (16 bp):
TTTTTATTTTTTTTTA
Found at i:15571152 original size:17 final size:15
Alignment explanation
Indices: 15571088--15571157 Score: 61
Period size: 17 Copynumber: 4.3 Consensus size: 15
15571078 TTTATCTTTA
15571088 TTTTATTTTCATTTTT
1 TTTTATTTTC-TTTTT
15571104 GTTTTACTTTTCTTTTT
1 -TTTTA-TTTTCTTTTT
*
15571121 TTTT-TATTTATTTTT
1 TTTTAT-TTTCTTTTT
15571136 TTTTATTATTCTGTTTT
1 TTTTATT-TTCT-TTTT
*
15571153 CTTTA
1 TTTTA
15571158 AATAAAAATC
Statistics
Matches: 45, Mismatches: 3, Indels: 10
0.78 0.05 0.17
Matches are distributed among these distances:
14 1 0.02
15 13 0.29
16 8 0.18
17 18 0.40
18 5 0.11
ACGTcount: A:0.11, C:0.07, G:0.03, T:0.79
Consensus pattern (15 bp):
TTTTATTTTCTTTTT
Found at i:15577214 original size:22 final size:21
Alignment explanation
Indices: 15577189--15577250 Score: 67
Period size: 20 Copynumber: 3.0 Consensus size: 21
15577179 TGGATGAAAA
15577189 ATGAGAAAAGAAAAAAAAGATG
1 ATGA-AAAAGAAAAAAAAGATG
15577211 ATGAAAAA-AAAAAAGAA-ATG
1 ATGAAAAAGAAAAAA-AAGATG
*
15577231 A-GAAAATGAAAAAAAGAGAT
1 ATGAAAAAGAAAAAAA-AGAT
15577251 TCAAATTGAA
Statistics
Matches: 35, Mismatches: 1, Indels: 9
0.78 0.02 0.20
Matches are distributed among these distances:
19 6 0.17
20 17 0.49
21 8 0.23
22 4 0.11
ACGTcount: A:0.71, C:0.00, G:0.19, T:0.10
Consensus pattern (21 bp):
ATGAAAAAGAAAAAAAAGATG
Found at i:15577231 original size:17 final size:19
Alignment explanation
Indices: 15577199--15577236 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
15577189 ATGAGAAAAG
*
15577199 AAAAAAAAGATGATGA-AA
1 AAAAAAAAGATAATGAGAA
15577217 AAAAAAAAGA-AATGAGAA
1 AAAAAAAAGATAATGAGAA
15577235 AA
1 AA
15577237 TGAAAAAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
17 4 0.22
18 14 0.78
ACGTcount: A:0.76, C:0.00, G:0.16, T:0.08
Consensus pattern (19 bp):
AAAAAAAAGATAATGAGAA
Found at i:15578517 original size:41 final size:41
Alignment explanation
Indices: 15578447--15578660 Score: 329
Period size: 41 Copynumber: 5.1 Consensus size: 41
15578437 ATGATTGTTA
15578447 AGGAGCAATTTACTTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTAC-TTTCCAAAGTCGTGGTGCCTCTGTTTAG
15578489 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
*
15578530 AGGAGCAATTTATTTTCCAAAGTCGTGGTGCCTCTGTTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * * *
15578571 AGGAGCAATTTATTTTCAAAAGCCGTGGTGCCTCTATTTAG
1 AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
* * *
15578612 AGGAGCAATTTATGTTTCTCAAAGTCGTTGAGCCTCTGTTTAG
1 AGGAGCAATTTA-CTTTC-CAAAGTCGTGGTGCCTCTGTTTAG
15578655 AGGAGC
1 AGGAGC
15578661 TTTGGTAAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
41 118 0.74
42 17 0.11
43 25 0.16
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.35
Consensus pattern (41 bp):
AGGAGCAATTTACTTTCCAAAGTCGTGGTGCCTCTGTTTAG
Found at i:15578673 original size:1 final size:1
Alignment explanation
Indices: 15578667--15578712 Score: 56
Period size: 1 Copynumber: 46.0 Consensus size: 1
15578657 GAGCTTTGGT
* * * *
15578667 AAAAAAAAAAAAAACAAAAAACAAAAAAACAAAAAAAAACAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
15578713 TGACAATGTT
Statistics
Matches: 37, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
1 37 1.00
ACGTcount: A:0.91, C:0.09, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:15578951 original size:27 final size:27
Alignment explanation
Indices: 15578921--15578972 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
15578911 CTTTCTTTTG
*
15578921 TATTTTATGTAT-TTTATTATTTATTAT
1 TATTATATGTATATTT-TTATTTATTAT
15578948 TATTATATGTATATTTTTATTTATT
1 TATTATATGTATATTTTTATTTATT
15578973 TATTTATTCA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 20 0.87
28 3 0.13
ACGTcount: A:0.27, C:0.00, G:0.04, T:0.69
Consensus pattern (27 bp):
TATTATATGTATATTTTTATTTATTAT
Found at i:15578976 original size:35 final size:35
Alignment explanation
Indices: 15578932--15579016 Score: 104
Period size: 35 Copynumber: 2.4 Consensus size: 35
15578922 ATTTTATGTA
15578932 TTTTA-TTATTTATT-ATTATTATATGT-ATATTTT
1 TTTTATTTATTTATTCATTATTAT-TGTAATATTTT
* *
15578965 TATTTATTTATTTATTCATTTTTCTTGTAATATTTT
1 T-TTTATTTATTTATTCATTATTATTGTAATATTTT
15579001 TTTTATTTATCTTATT
1 TTTTATTTAT-TTATT
15579017 GTATTATCTG
Statistics
Matches: 45, Mismatches: 2, Indels: 7
0.83 0.04 0.13
Matches are distributed among these distances:
33 1 0.02
34 4 0.09
35 21 0.47
36 19 0.42
ACGTcount: A:0.24, C:0.04, G:0.02, T:0.71
Consensus pattern (35 bp):
TTTTATTTATTTATTCATTATTATTGTAATATTTT
Found at i:15578980 original size:39 final size:38
Alignment explanation
Indices: 15578923--15579023 Score: 95
Period size: 39 Copynumber: 2.7 Consensus size: 38
15578913 TTCTTTTGTA
*
15578923 TTTTATGTATTT-TATTATTTATTATTATTATATGT-ATAT
1 TTTTATTTATTTAT-TTATTTATTATT-TTAT-TGTAATAT
* *
15578962 TTTTATTTATTTATTTATTCA-T-TTTTCTTGTAATAT
1 TTTTATTTATTTATTTATTTATTATTTTATTGTAATAT
15578998 TTTT-TTTATTTATCTTATTGTATTAT
1 TTTTATTTATTTAT-TTATT-TATTAT
15579024 CTGTTAATAA
Statistics
Matches: 52, Mismatches: 4, Indels: 12
0.76 0.06 0.18
Matches are distributed among these distances:
35 12 0.23
36 16 0.31
37 3 0.06
38 2 0.04
39 18 0.35
40 1 0.02
ACGTcount: A:0.24, C:0.03, G:0.04, T:0.69
Consensus pattern (38 bp):
TTTTATTTATTTATTTATTTATTATTTTATTGTAATAT
Found at i:15579635 original size:20 final size:20
Alignment explanation
Indices: 15579599--15579637 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
15579589 TTCCGACGAA
* *
15579599 AAAACCCAGATTTCGATGAC
1 AAAACCCAGAATCCGATGAC
15579619 AAAACCCAGAATCCGATGA
1 AAAACCCAGAATCCGATGA
15579638 ATCTTCAACC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.26, G:0.15, T:0.15
Consensus pattern (20 bp):
AAAACCCAGAATCCGATGAC
Found at i:15580065 original size:17 final size:16
Alignment explanation
Indices: 15580032--15580119 Score: 65
Period size: 17 Copynumber: 5.4 Consensus size: 16
15580022 TTAGATTAGG
* *
15580032 TTTATTTAATATT-TT
1 TTTATTTTATTTTATT
15580047 TTTATCTTTATTTTATT
1 TTTAT-TTTATTTTATT
*
15580064 TTTATTTTTGTTTTACTT
1 TTTA-TTTTATTTTA-TT
*
15580082 TTT-TTTATTTTTTATT
1 TTTATTT-TATTTTATT
*
15580098 TTTA-TTTATTTTTTT
1 TTTATTTTATTTTATT
15580113 TATTATT
1 T-TTATT
15580120 CTGTTTTCTT
Statistics
Matches: 59, Mismatches: 6, Indels: 14
0.75 0.08 0.18
Matches are distributed among these distances:
15 13 0.22
16 19 0.32
17 21 0.36
18 6 0.10
ACGTcount: A:0.17, C:0.02, G:0.01, T:0.80
Consensus pattern (16 bp):
TTTATTTTATTTTATT
Found at i:15580066 original size:6 final size:6
Alignment explanation
Indices: 15580045--15580116 Score: 62
Period size: 6 Copynumber: 12.3 Consensus size: 6
15580035 ATTTAATATT
* * *
15580045 TTTTTA TCTTTA -TTTTA TTTTTA TTTTT- GTTTTA -CTTT- TTTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
15580089 TTTTTTA TTTTTA TTTATTT TTTTTA TT
1 -TTTTTA TTTTTA TTT-TTA TTTTTA TT
15580117 ATTCTGTTTT
Statistics
Matches: 53, Mismatches: 7, Indels: 12
0.74 0.10 0.17
Matches are distributed among these distances:
5 14 0.26
6 28 0.53
7 11 0.21
ACGTcount: A:0.14, C:0.03, G:0.01, T:0.82
Consensus pattern (6 bp):
TTTTTA
Found at i:15580067 original size:28 final size:25
Alignment explanation
Indices: 15580043--15580116 Score: 80
Period size: 28 Copynumber: 2.8 Consensus size: 25
15580033 TTATTTAATA
15580043 TTTTTTTATCTTTATTTTATTTTTAT
1 TTTTTTTATCTTT-TTTTATTTTTAT
15580069 TTTTGTTT-TACTTTTTTTTATTTTTTAT
1 TTTT-TTTAT-C-TTTTTTTA-TTTTTAT
15580097 TTTTATTTAT-TTTTTTTATT
1 TTTT-TTTATCTTTTTTTATT
15580117 ATTCTGTTTT
Statistics
Matches: 42, Mismatches: 1, Indels: 11
0.78 0.02 0.20
Matches are distributed among these distances:
25 2 0.05
26 13 0.31
27 9 0.21
28 17 0.40
29 1 0.02
ACGTcount: A:0.14, C:0.03, G:0.01, T:0.82
Consensus pattern (25 bp):
TTTTTTTATCTTTTTTTATTTTTAT
Done.