Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: NW_019167937.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_2, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 35885061
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.32
Warning! 165000 characters in sequence are not A, C, G, or T
File 82 of 195
Found at i:15580077 original size:11 final size:10
Alignment explanation
Indices: 15580053--15580113 Score: 65
Period size: 10 Copynumber: 6.2 Consensus size: 10
15580043 TTTTTTTATC
15580053 TTTATTTTATT
1 TTTATTTT-TT
15580064 TTTATTTTTGT
1 TTTATTTTT-T
*
15580075 TTTACTTTTT
1 TTTATTTTTT
15580085 TTTA---TTT
1 TTTATTTTTT
*
15580092 TTTATTTTTA
1 TTTATTTTTT
15580102 TTTATTTTTT
1 TTTATTTTTT
15580112 TT
1 TT
15580114 ATTATTCTGT
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
7 7 0.16
10 19 0.44
11 17 0.40
ACGTcount: A:0.13, C:0.02, G:0.02, T:0.84
Consensus pattern (10 bp):
TTTATTTTTT
Found at i:15580090 original size:27 final size:26
Alignment explanation
Indices: 15580043--15580116 Score: 96
Period size: 27 Copynumber: 2.8 Consensus size: 26
15580033 TTATTTAATA
*
15580043 TTTTTTTATCTTTATTTTATTTTTATT
1 TTTTTTTA-CTTTTTTTTATTTTTATT
15580070 TTTGTTTTACTTTTTTTTATTTTTTATT
1 TTT-TTTTACTTTTTTTTA-TTTTTATT
*
15580098 TTTATTTA-TTTTTTTTATT
1 TTTTTTTACTTTTTTTTATT
15580117 ATTCTGTTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 6
0.84 0.04 0.12
Matches are distributed among these distances:
25 2 0.05
26 9 0.21
27 16 0.37
28 16 0.37
ACGTcount: A:0.14, C:0.03, G:0.01, T:0.82
Consensus pattern (26 bp):
TTTTTTTACTTTTTTTTATTTTTATT
Found at i:15580126 original size:26 final size:27
Alignment explanation
Indices: 15580043--15580131 Score: 69
Period size: 26 Copynumber: 3.3 Consensus size: 27
15580033 TTATTTAATA
* *
15580043 TTTT-TTTATCTTTATTTTATTTT-TAT
1 TTTTATTTA-CTTTTTTTTATTTTCTAG
* * *
15580069 TTTTGTTTTACTTTTTTTTATTTTTTAT
1 TTTT-ATTTACTTTTTTTTATTTTCTAG
15580097 TTTTATTTA-TTTTTTTTATTATTCT-G
1 TTTTATTTACTTTTTTTTATT-TTCTAG
*
15580123 TTTTCTTTA
1 TTTTATTTA
15580132 AATAAAAAAT
Statistics
Matches: 54, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
26 23 0.43
27 20 0.37
28 11 0.20
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.80
Consensus pattern (27 bp):
TTTTATTTACTTTTTTTTATTTTCTAG
Found at i:15580301 original size:58 final size:58
Alignment explanation
Indices: 15580136--15580310 Score: 262
Period size: 59 Copynumber: 3.0 Consensus size: 58
15580126 TCTTTAAATA
* *
15580136 AAAAATCAAATTTTCAAAAAAAAAAATTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT
1 AAAAAT-AAATTTTC-AAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT
* * *
15580196 AAAAAT-AAGTTTAAAAAAAATATATTTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTT
1 AAAAATAAATTTTCAAAAAAATAT-TTTTAG-GGAAAAGTTGAAAGTATCAATTTTCCTT
15580255 AAAAATAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
1 AAAAATAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCC
15580311 CTACACAAGA
Statistics
Matches: 104, Mismatches: 8, Indels: 8
0.87 0.07 0.07
Matches are distributed among these distances:
57 8 0.08
58 36 0.35
59 39 0.38
60 21 0.20
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.34
Consensus pattern (58 bp):
AAAAATAAATTTTCAAAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT
Found at i:15581226 original size:26 final size:26
Alignment explanation
Indices: 15581189--15581241 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15581179 GTTGACTTAG
15581189 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15581215 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15581241 G
1 G
15581242 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15582117 original size:26 final size:26
Alignment explanation
Indices: 15582088--15582138 Score: 84
Period size: 26 Copynumber: 2.0 Consensus size: 26
15582078 TTACTTAGGT
*
15582088 ATACGGAGTTCATTCCTAGTCTAAGC
1 ATACGGAGTTCATTCCCAGTCTAAGC
*
15582114 ATACGGAGTTCTTTCCCAGTCTAAG
1 ATACGGAGTTCATTCCCAGTCTAAG
15582139 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.25, C:0.24, G:0.20, T:0.31
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGC
Found at i:15583372 original size:878 final size:875
Alignment explanation
Indices: 15580783--15585492 Score: 5688
Period size: 899 Copynumber: 5.3 Consensus size: 875
15580773 ACGATATGAC
* *** *
15580783 ACCGTAAAAAGATTCAAAAATTAAGAAAAATAGAAAACGATTCGTCTTGCCATGAAACTTCACGT
1 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
15580848 GAAGGGC-TAAGGGACCATTGTATGAATTTACAAGCCAT-AAAATAGGTATTGGCACGTAGAAAT
66 GAA-GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAT-GGCATTGGCACGTAGAAAT
* *
15580911 ATGATGATGTGCCTAAACCCACCCACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
129 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * *
15580976 GCCGGCGTAGTGCCAGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC-GAAG
194 GCCGGCGTAGTGCCCG-CC-CCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAG-AG
* * * * * *
15581040 TTCATTCCCAGTCTAAGATCGGACCGGACCGAGTGTTGGGGCAGCAGGATCGACAGCACGCAAAG
256 TTCATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG
* * * * * * ** * **
15581105 GGGGGCCCGATCGATCCCTGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGTGCCCGCACGTTC
321 GGGGACCCGATCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGACTGAGCGCCCGCACACTC
* *
15581170 GTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCA
386 ATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T----A----A-T---A
* * *
15581235 GTCTAAGATCAGACCGGACCGAGGGTTCCGGCAGCACATGCTAGGCTCGAGCATGTGCTGGTGCC
433 -TC--AGATCAGACC--A---AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCC
** ** *
15581300 TTATTTTTCTTCGTCGGGGCACCATCGTCGGAGCGCCACCGGAGAACCTGACTGGCGGCATTGGG
490 GCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGG
* ** *
15581365 GTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACGGGATGTGCAATGGGTGCTGGTACTTGGC
555 GTTCCGACGATCAGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* *
15581430 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTGA
620 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
* *
15581495 CATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGGAATGGGGACACTTTTTTCAAATGG
685 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * * * *
15581560 TCACAAAATCTTGTACACTACGAATTTTTAGCTGAA-TGTTTTGCGCAAGTCAACAAAAATACAA
750 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * *
15581624 GGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAACAAATTTTAAAAAATCCCGA
815 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA
* ** * *
15581685 ACCGTAAAAATTTTTGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATTAAACTTCACGT
1 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
15581750 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCGTAAAAATGGCATTGGCACGTAGAAATAT
66 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* * *
15581815 GAAGATGTGCCTAAACCAACCCACCACCCTATCGATCCATGGCTTGCGCATCCCGTCTCTCTGGC
131 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * **
15581880 CGGCGTAGTGCCCG--CCCGCCCGCCTGCTCGTTTCATCGGTTGGCTTAGGCATATGGAGTTCAT
196 CGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCAT
* * * * * * **
15581943 TCCCAGCCTAAGAGCAGACCGAATTGAGGGTTGCGACAGTAGGATTGGTAGCACGCAGAGGGGGA
261 TCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGA
* * * * ** * *
15582008 CCC-AGT-GATCCCCTGCTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGTACGCTCATTT
326 CCCGA-TCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGACTGAGCGCCCGCACACTCATTT
* *
15582071 CGTGGGCTT-ACTTAGGTATACGGAGTTCATTCCTAGTCTAAGCATACGGAGTTCTTTCCCAGTC
390 CGTGGG-TTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---A------T---A-TC
* * * * *
15582135 TAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATTCTGAGCTCGGGCATGTGCTAGTGCCACA
435 --AGATCAGACC--A---AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCA
* ** * * *
15582200 TTTTTCTTCGTCGGGACACCATCACCGGAGCATCGCCGTAGAACCTGACCGGAGGCATTGGGGTT
493 TTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTT
* *
15582265 CCGACGATCGGGGGGGTCGGGCGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
558 CCGACGATCAGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * *
15582330 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCTCTTAAAGATCGTTTGAGA
622 TTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * *
15582395 TTTTACAGGTTTGCTACCAATTGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
687 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * *
15582460 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATATTTTTGCGCATGCCAACAAAAATGCATGG
752 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * * *
15582525 ATCATGTCTACCAAATATGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTTGA
817 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA
15582584 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
1 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* *
15582649 CAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAAC-TAGAAATA
66 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC-ACGTAGAAATA
* * * *
15582713 TAAAGATGTGTCGAAACCCACCTACCACCTTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
130 TGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGG
**** * **
15582778 CAAATGTAATGCCCGCCCACCCGCCCGCCCGCTAATTTCATCAGTTGGCTTAGGCATACAGAGTT
195 CCGGCGTAGTGCCCG-CC-CCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTT
* * * *
15582843 CATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCAGCAGTAGGATTGGCAGCACGCAGAGGG
258 CATTCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGG
* * *
15582908 GGACCC-AGCCGATCCTCGGCTTGCGCATCCTGCCCCTCTGGTCGACTGAGCGCCCGCACACTCA
323 GGACCCGA-TCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGACTGAGCGCCCGCACACTCA
*
15582972 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGATCAGACTAAGGGTT
387 TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGATCAGACCAAGGGTT
* * * * *
15583037 GCGACAGCACATGCTGGGCTTGGGCATGTGCTGTTGCCGCATTTTTCTTTGTCGGGGCACAATCG
452 GCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG
* * * * * *
15583102 TCGGAGCATCATCGGAGAACCTGACCGACGGCATTAGGGTTCCAACGTTCAGGGGGGTCGGGGGG
517 TCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGG
* *
15583167 TGTGCGCACATGATGTACAATGGGTGCTGGTACTCT-GCCCTTATATTGGCCCCCCTATACCC-C
582 TGTGCGCACATGATGTGCGATGGGTGCTGGTACT-TGGCCCTTATATTGG-CCCCCTAT-CCCTC
*
15583230 ATCAAACCTCGAGAACTCACACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
644 ATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTA
* * * *
15583295 GCCATTAAAGTGTCTGGAATGGGGATAATTTTTTCAAATGATCACAAAATCTTGTACACTTCGAG
709 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
* * **
15583360 TTTTTAGCTGAATTTTTTTTTACATGCCAA-AAAATATACAAGGATCACGTCTATGAAGTTTGGG
774 TTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA-ATACAAGGATCACGTCTACCAAGTTTGGG
*
15583424 GCCACAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA
838 GCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA
* * * ** * *
15583462 ACCGCAAAAACTTTAAAAAATTATGAAAAATAGAAATCGAGTCGTCTTGCCATGAAACTTCACCT
1 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
* * * *
15583527 GAAGGGTTAA-GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATAT
66 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* * * * *
15583591 GGAGATGTGCCTAAATCCACCTACCACCCTATCGATTCATGACTTGCGCATCCCGTCTCTCTGGC
131 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * *
15583656 CGACGTAGT----G--CCCACCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCAT
196 CGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCAT
* * * ** * * *
15583715 TCCCATTCTCAGATCAGACCGGACCAAGGGTTGCGGTAGCAGGATCGACAGCACACAAAGGGGGA
261 TCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGA
*** * * *** * *
15583780 CCCGATCAAT-CCCGGCTTGCGCATCCT-CGTTTCATGGATTGACTTAG-GCATACAGAGTTCA-
326 CCCGATCAATCCCCGGCTTGCGCATCCTGCCCCTC-TGG-TCGACTGAGCGCCCGCACA-CTCAT
*** * * * * *
15583841 TTC----CCAGAC-TAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCAAGGGTTG
388 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGATCAGACCAAGGGTTG
** * ** *
15583901 CGATAGCACATCCTGGGCTTAGGCATGTGCTGGTGTCGCATTTTTCTTCGTCGGGGCACCATCGT
453 CGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGT
* *
15583966 CGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCTGGCGATC-GGGGGGCCGGGGGGG
518 CGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCC-GGGGGG
* *
15584030 TGTGCGCACATGATGCGCGATGGGTTCTGGTACTTGGCCCTTATATT-GCCCCCTATCCCTCATC
582 TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
* ** *
15584094 GAACCTCGAGAACTCACACCCTTTTAAAAAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
647 AAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCC
*
15584159 ATTAAAGTGTATGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
712 ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
15584224 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT-ACGTCTACCAAGTTTGGGGCCA
777 TTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
*
15584288 AAACTCCTTCCGAAAAAATTTTCAAAAATCTCGA
842 AAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA
* * *
15584322 ACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGT
1 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
15584387 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGCCATTGGCACGTAGAAATAT
66 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* *
15584452 AAAGATGTGCCTAAACCCACCTACCATCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
131 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * *
15584517 CGGCGTAGTGCCCG--CCTGCCCACCCGCTCGTTTCATCAGTTGGCTTAGGAATACAGAGTTCAT
196 CGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCAT
* * * * *
15584580 TCCCATTCTAAGATCAGACCAAACCT-AGGGTTGCGGTAGCAGGATCAACAGCACGTAGAGGGGG
261 TCCCAGTCTAAGATCAGACCGAA-CTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
* * * *
15584644 ACCCGATCAATCCCCGACTTGCGCAT-CTCGCCCCTCTGG-CTGGCTGAGCGCCCGTACGCTCAT
325 ACCCGATCAATCCCCGGCTTGCGCATCCT-GCCCCTCTGGTC-GACTGAGCGCCCGCACACTCAT
* *
15584707 TTTGGGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGT
388 TTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-T----A----A-T---A-T
* * * *
15584772 CTAAGATCAGATTGGACCGAGGGTTGCGGCAGCCCATGCTGGGCTCGGGCATGTGCTGGTGCTGT
434 C--AGATC--A---GACCAAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGC
* * * *
15584837 ATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACTTGACCGGCGGCATTGAGGT
492 ATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGT
* * * *
15584902 TTCGATGATCAGGGGGGCCGGGGGGGTGTGCGCAC-TCGTTGTACGATGGGTGCTGGTACTTGGC
557 TCCGACGATCAGGGGGGCC-GGGGGGTGTGCGCACAT-GATGTGCGATGGGTGCTGGTACTTGGC
* * * *
15584966 TCTTATGTTGGCCCCCTATTCCTCATCAAGCCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
620 CCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGA
*
15585031 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGG
685 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* * * *
15585096 TCACAAAATCTTGTACACTTCGAGTTTTGAGCTGAATTTTTTTATGCATGCCTAGAAAAATACAA
750 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAA
* * * *
15585161 GGATCACGTATACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTCAAAAATCCCAA
815 GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGA
* * *
15585222 ACCGTAAAAGGTTTCAAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCA-GT
1 ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
*
15585286 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATAT
66 GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
* *
15585351 GAAGATGTGCCTAAA-CCACCTA-TACCCCATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
131 GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * * ** *
15585414 CGGCGTGGTGCCCGTCCGCCTGCTCGCCTGCTCGTTTTGTCAGTTGGCTTAGGCATACGGAGTTC
196 CGGCGTAGTGCCCG-CC-CCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTC
*
15585479 ATTCGCAGTCTAAG
259 ATTCCCAGTCTAAG
15585493 CATACGGAGT
Statistics
Matches: 3325, Mismatches: 400, Indels: 167
0.85 0.10 0.04
Matches are distributed among these distances:
860 122 0.04
861 283 0.09
862 13 0.00
863 192 0.06
864 3 0.00
865 120 0.04
866 22 0.01
867 6 0.00
868 27 0.01
869 114 0.03
870 4 0.00
871 22 0.01
873 2 0.00
876 2 0.00
877 162 0.05
878 390 0.12
879 3 0.00
881 2 0.00
883 9 0.00
885 3 0.00
886 1 0.00
889 2 0.00
890 2 0.00
892 4 0.00
893 1 0.00
894 1 0.00
895 1 0.00
897 390 0.12
898 355 0.11
899 521 0.16
900 111 0.03
901 55 0.02
902 186 0.06
903 114 0.03
904 80 0.02
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (875 bp):
ACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGT
GAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGTAGAAATAT
GAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
CGGCGTAGTGCCCGCCCCCGCCCGCCCGCTCGTTTCATCAGTTGGCTTAGGCATACAGAGTTCAT
TCCCAGTCTAAGATCAGACCGAACTGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGA
CCCGATCAATCCCCGGCTTGCGCATCCTGCCCCTCTGGTCGACTGAGCGCCCGCACACTCATTTC
GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATATCAGATCAGACCAAGGGTTGCGG
CAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGG
AGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCAGGGGGGCCGGGGGGTGTG
CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTA
AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
CTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAC
TCCTTCCGAAAAAATTTTAAAAAATCTCGA
Found at i:15583850 original size:27 final size:26
Alignment explanation
Indices: 15583827--15583879 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15583817 ATTGACTTAG
15583827 GCATACAGAGTTCATTCCCAGACTAA
1 GCATACAGAGTTCATTCCCAGACTAA
** *
15583853 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGACTAA
15583879 G
1 G
15583880 ATCGGACCAG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:15584753 original size:26 final size:26
Alignment explanation
Indices: 15584724--15584776 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15584714 GTTGACTTAG
*
15584724 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15584750 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15584776 G
1 G
15584777 ATCAGATTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15585502 original size:26 final size:25
Alignment explanation
Indices: 15585466--15585517 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 25
15585456 GTTGGCTTAG
*
15585466 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCA-TCCCAGTCTAA
15585492 GCATACGGAGTTCATCCCAGTCTAA
1 GCATACGGAGTTCATCCCAGTCTAA
15585517 G
1 G
15585518 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
25 11 0.44
26 14 0.56
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (25 bp):
GCATACGGAGTTCATCCCAGTCTAA
Found at i:15586393 original size:26 final size:26
Alignment explanation
Indices: 15586349--15586401 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15586339 GTTGACTTAG
* *
15586349 GCATACGGAGCTCAATCCCAGTTTAA
1 GCATACGAAGCTCAATCCCAGTCTAA
* *
15586375 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGCTCAATCCCAGTCTAA
15586401 G
1 G
15586402 ATCAGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGCTCAATCCCAGTCTAA
Found at i:15587270 original size:26 final size:26
Alignment explanation
Indices: 15587240--15587292 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15587230 GTTGACATAG
15587240 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15587266 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15587292 G
1 G
15587293 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15587359 original size:891 final size:889
Alignment explanation
Indices: 15585463--15588936 Score: 4066
Period size: 891 Copynumber: 3.9 Consensus size: 889
15585453 TCAGTTGGCT
* * *
15585463 TAGGCATACGGAGTTCATTCGCAGTCTAAGCATACGGAGTTCA-TCCCAGTCTAAGATCGGACCG
1 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCG
* * * * * * * ** **
15585527 GACCTACGGTTGT-ACTAGCACATGCTGGGTTCGGGCATATGCTACTGCCATATTTTTCTTCGCT
66 GACCGAGGGTTGTGGC-AGCACATGCAGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCG-T
* * *
15585591 GGGG-CACCATCGCCGGAGAACCTGACCGGTGGCATTAGGGTTCCGACGATC-AGGGGGCC-GGG
129 GGGGACACCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGG
* *
15585653 GGTGTGCGCACATGATGTGCGGTGGGTGCTGGAACTTGGCCCTTATATTGGCCCCCTATCCCTCA
194 GGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCA
* *
15585718 TCAAACCTCGAA-AACTCACAACCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGTTGCCAATA
259 TCAAACCTC-AAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATA
* * * * **
15585782 GCCATTAAAGTGTCTGAAATTGGAACACTTTTGTCAAATGGTAACAAAATCTTACACACTTC---
323 GCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAG
*
15585844 -TTC--GCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
388 TTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGG
* * * * **
15585906 CCAAAACTCCTTCCGAAAAAATTTTTAAAAATCCCGAACTGTAAAAAGTTTCAAAAATCATGAAA
453 CCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAA
* * ** *
15585971 AATAGAAATCGAGTCGTCTTGCCATGAAACTTCTTGTGAAGGCTTAAGGGACCATTCTATGAATT
518 AATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATT
* * * * *
15586036 TACAAGACATAAAAATGGCACTGGCATGT-AGAAATATGAAGATGCGCCTAAACCCACCTACCAC
583 TACAAGCCAAAAAAATGGCATTGGCAT-TCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * **
15586100 CCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCAGCCTGCCCGCCCAT
647 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCC-GCCCGCCCGC
* * * * * **
15586165 TCACTCGTTTCGTCGGTTGGCTTAGACATACAGAGTTCATTCCCAATCTAAGACCGGACCAGATC
711 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATC
* * * * * * * * *
15586230 AAGTGTTGCGGCAACAGGATCAGCAGCACGCAGAGGGGGACCC-AACGGATCCCTGGCTTGCACA
776 GAGGGTTGCGGCAGCAGGATCAGCAGCATGCAAAAGGGGACCCGATC-GATCCC-GGATTGCGCA
* * * *
15586294 TCCCGCCCTTCTGGCCGGCTAAGCGCCCGCACGCTCGTTTTGTGGGTTGAC
839 TCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
* * * *
15586345 TTAGGCATACGGAGCTCAATCCCAGTTTAAGCATACGAAGTTCATTCCCAGTCTAAGATCAGATC
1 -TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
* ** **
15586410 GGACCGAGAGTTACGGCAGCACATGCTA-GGCTC-GAGCATGTGCTGGTTTCGCATTTTTCTTCG
65 GGACCGAGGGTTGTGGCAGCACATGC-AGGGCTCGGA-CATGTGCTGGTGCCGCATTTTTCTTCG
* * * * *
15586473 TAGAGG-CACCATCGCCAGAGAACCTGATCGGCAGCATTGGGGTTCTGACGATCGGGGGGGCCGG
128 T-GGGGACACCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGG
* *
15586537 GGGG-GTGCGCACAGGATGTGCGATGGGTTCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
192 GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCT
* *
15586601 CATCAAACGTCAAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGT
257 CATCAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAAT
15586666 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
322 AGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGA
* *
15586731 GTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCAACCAAGTTTGGG
387 GTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG
* * * * * ** * *
15586796 GCCAAAACTCCTTCTGAAGAAATTTTAAAAAATCTCAAATTGTAAAAAGTTTTGAAAATCGTGAA
452 GCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAA
* * *
15586861 AAATAAAAAACGAGTCGTCTTGCCATGAAAGTTCACGTCAAGGCTTAAGGGACCATGGTATGAAT
517 AAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAT
*
15586926 TTACAAGCCAAAAAAATGGCATTGGCATTCAAAAATATGAAGATGTGCCTAAACCCACATACCAC
582 TTACAAGCCAAAAAAATGGCATTGGCATTCAAAAATATGAAGATGTGCCTAAACCCACCTACCAC
* * *
15586991 CCTATCGATCCACAGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGACCACCCGCCTGC
647 CCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG-CCGCCCGCCCGC
* *
15587056 CCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACC
711 CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATC
* ** * * *
15587121 GAGGGTTGTGGCAGCAGGATTGGCAGCATGCAAAAGGGGACCTGGTTGATCCACGGATTGCGCAT
776 GAGGGTTGCGGCAGCAGGATCAGCAGCATGCAAAAGGGGACCCGATCGATCC-CGGATTGCGCAT
* * *
15587186 CCCGCCCCTCTGGTCGATTGAGCGCCCGCACGCTCGTTTCATGGGTTGAC
840 CCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
*
15587236 ATAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGA-C
1 -TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATC
* * *
15587300 TGGACCAAGGGTTGTGGTAGCACATGCAGGGCTCGGACATGTGCTGGTGCCGTATTTTTCTTCGT
65 -GGACCGAGGGTTGTGGCAGCACATGCAGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCG-
15587365 TGGGGCACCATCGTCGGAGCATCGTCGGAGCATCGTCGGAGAACCTGACCGGCGGCATTGGGGTT
128 TGGGG-A-CA----C----CATCG-C----CA------GAGAACCTGACCGGCGGCATTGGGGTT
* * * * *
15587430 CCGGCGATCGAGGGGGTCGGGGGGTGTGTGTACATGATGTGCGATGGGTGCTGGTACTTGGCCGT
172 CCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* **
15587495 TATATTGGCCCCCTATCCCTCTTCAAACCTTGAGAACTCAC-ACTCCCTTAAAGAGCATTTGAGA
237 TATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACAAC-CCCTTAAAGAGCATTTGAGA
* * *
15587559 TTTTACAGGTTTGCTACCAATAGCCATTAAAGTGTCTGAAATGGGGACCCTTTTTTGAAATGGTC
301 TTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
** ** * * *
15587624 GTAAAATCTTGTACACTTTAAGTTTTTAGCTGAATTTTTTTTTGCATGCCTACAAAAATACAAGG
366 ACAAAATCTTGTACACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
15587689 ATCACTTCTACCAAGTTTGGGACCAAAAATCCTTCCAAAAAAATTTTAAAAAAATCCCGAACCGC
431 ATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGC
**
15587754 AAAAAGTTTTGAAAATTGTGAAAAAT-AAAAACGAGTCGTCTTGCC-TGAAACTTCACGTGAAGG
495 AAAAAGTTTTGAAAATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* * * *
15587817 CTT-AGGGACCATTGTATGAATTTAGAAGCC-ATAAAATGGCATTGGCA-CCGTAGAACATATGA
560 CTTAAGGGACCATTGTATGAATTTACAAGCCAAAAAAATGGCATTGGCATTC--A-AAAATATGA
* *
15587879 ATATG-GCCTAAACCCACCTACCACCCTATCTATCCCATCGGCTTGCGCATCCCGTCTCTCCT-G
622 AGATGTGCCTAAACCCACCTACCACCCTATCGAT-CCA-CGGCTTGCGCATCCCGTCTCT-CTGG
*
15587942 CCGACGATAGTGCCTCGCCCGTCCGCCCGCCGCATTGCTCGTTTATCGTCGGTTGGCTTA-GCAT
684 CCGACG-TAGTGCC-CG-CCGCCCGCCCGCC-C---GCTCG-TT-TCGTCGGTTGGCTTAGGCAT
* * * * * *
15588006 ATGAAGTTCATTTCCAAGTCTAAGATTCAGACCAGATCGAGGGATTGCGGTAGCAGGAGCAGCAG
740 ACGGAGTTCA-TTCCCAGTCTAAGATT-GGACCAGATCGAGGG-TTGCGGCAGCAGGATCAGCAG
* *
15588071 CATG-TAGAGGGGACACCGATCGAATCCTC-GACTTTGCGCAT-CCGCCCCTCTGGCCGGTTGAG
802 CATGCAAAAGGGGAC-CCGATCG-ATCC-CGGA--TTGCGCATCCCGCCCCTCTGGCCGGTTGAG
* *
15588133 CGCAACGCACGGCTCGTATTCGTAGGCTTGAC
862 CGC-CCGCAC-GCTCGT-TTCGT-GGGTTGAC
* **
15588165 TGAGGCATACGGAGTTTCATTCCCAGTCTAAGTATACGGAGTTCATTCTTAGTCTAAGAT-AGGA
1 T-AGGCATACGGAG-TTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCA-GA
* * * * *
15588229 TCGGACACGAGGCCTCTGTAGGCAGCAGATGC-TGGCTCGGCCATGTGC-GGATGCTGGCATTTT
63 TCGGAC-CGAGG-GT-TGT-GGCAGCACATGCAGGGCTCGGACATGTGCTGG-TGC-CGCATTTT
** * * ** *
15588292 TCTTACGCCGGGATACCATCGCCGGAGAAACCTGACCGGCTGGCATTGGGGTTCCGGTGATCGGG
122 TCTT-CGTGGGGACACCATCGCCAGAG-AACCTGACCGGC-GGCATTGGGGTTCCGACGATCGAG
* ** * *
15588357 GGGGCCGGGGGGTTTGCATACATGACGTGCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCC
184 GGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC
* * * *
15588422 CTATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTG
249 CTATCCCTCATCAAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTG
* * * * **
15588487 CTGTCAGTAGCCATTAAAGTGTCTCAAATGCGGACACTTTTTTCAAATGGTCGTAAAATCTTGTA
314 CTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTA
* * *
15588552 CACTACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAGGTCTACCA
379 CACTTCGAGTTTCTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCA
* * * * * * *
15588617 GGTTTGGGGCCAAAAATCCTTCCCAAAAAATTTTAACAAATCCTGAATCACAAAAAGGTTTGAAA
444 AGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAA
* * * *
15588682 ATCATGAAAAATAGAAAACAAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATT
509 ATCATGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* **
15588747 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCA
574 GTATGAATTTACAAGCCAAAAAAATGGCATTGGCATTCAAAAATATGAAGATGTGCCTAAACCCA
* * * * *
15588812 CCTACCACCCTATCGATCCACGGCTTGCGCATCTCATCCCTCTGGCCGGCGTAGTGCCTGCTCGC
639 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGC-CGC
* *
15588877 CCGCCCGCCCGCTTGTTTTGTCGGTTGGCATT-GGCATACGGAGTTCATTCCCAGTCTAAG
703 CCGCCCGCCCGCTCGTTTCGTCGGTTGGC-TTAGGCATACGGAGTTCATTCCCAGTCTAAG
15588937 CATACGGAGT
Statistics
Matches: 2218, Mismatches: 277, Indels: 168
0.83 0.10 0.06
Matches are distributed among these distances:
883 40 0.02
884 106 0.05
885 179 0.08
886 5 0.00
889 3 0.00
890 3 0.00
891 536 0.24
892 6 0.00
894 2 0.00
898 1 0.00
902 5 0.00
903 1 0.00
907 25 0.01
908 16 0.01
909 4 0.00
910 1 0.00
911 16 0.01
912 54 0.02
913 96 0.04
914 353 0.16
915 371 0.17
916 49 0.02
917 54 0.02
918 15 0.01
919 2 0.00
920 5 0.00
921 14 0.01
922 29 0.01
923 22 0.01
924 31 0.01
925 27 0.01
926 13 0.01
927 6 0.00
928 6 0.00
929 19 0.01
930 48 0.02
931 5 0.00
932 4 0.00
933 21 0.01
934 23 0.01
935 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (889 bp):
TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGATCG
GACCGAGGGTTGTGGCAGCACATGCAGGGCTCGGACATGTGCTGGTGCCGCATTTTTCTTCGTGG
GGACACCATCGCCAGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGGGGGG
TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATC
AAACCTCAAGAACTCACAACCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCC
ATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTT
CTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCA
AAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATCATGAAAAAT
AAAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAC
AAGCCAAAAAAATGGCATTGGCATTCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTA
TCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCGCCCGCCCGCCCGCT
CGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGATCGAGGG
TTGCGGCAGCAGGATCAGCAGCATGCAAAAGGGGACCCGATCGATCCCGGATTGCGCATCCCGCC
CCTCTGGCCGGTTGAGCGCCCGCACGCTCGTTTCGTGGGTTGAC
Found at i:15587389 original size:11 final size:11
Alignment explanation
Indices: 15587373--15587405 Score: 66
Period size: 11 Copynumber: 3.0 Consensus size: 11
15587363 GTTGGGGCAC
15587373 CATCGTCGGAG
1 CATCGTCGGAG
15587384 CATCGTCGGAG
1 CATCGTCGGAG
15587395 CATCGTCGGAG
1 CATCGTCGGAG
15587406 AACCTGACCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 22 1.00
ACGTcount: A:0.18, C:0.27, G:0.36, T:0.18
Consensus pattern (11 bp):
CATCGTCGGAG
Found at i:15588218 original size:26 final size:27
Alignment explanation
Indices: 15588171--15588222 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 27
15588161 TGACTGAGGC
15588171 ATACGGAGTTTCATTCCCAGTCTAAGT
1 ATACGGAGTTTCATTCCCAGTCTAAGT
**
15588198 ATACGGAG-TTCATTCTTAGTCTAAG
1 ATACGGAGTTTCATTCCCAGTCTAAG
15588223 ATAGGATCGG
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 15 0.65
27 8 0.35
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (27 bp):
ATACGGAGTTTCATTCCCAGTCTAAGT
Found at i:15588946 original size:26 final size:26
Alignment explanation
Indices: 15588910--15588962 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15588900 GTTGGCATTG
15588910 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15588936 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15588962 G
1 G
15588963 ATCGCACAGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15589239 original size:731 final size:726
Alignment explanation
Indices: 15588168--15590367 Score: 3103
Period size: 731 Copynumber: 3.0 Consensus size: 726
15588158 GCTTGACTGA
* * *
15588168 GGCATACGGAGTTTCATTCCCAGTCTAAGTATACGGAGTTCATTCTTAGTCTAAGATAGGATCGG
1 GGCATACGGAG-TTCATTCCCAGTCTAAGCATACGGAGTTCATTC-CAGTCTAAGAT-GCA-CGG
* * * *
15588233 A-CACGAGGCCTCTGTAGGCAGCAGATGCT-GGCTC-GGCCATGTGC-GGATGCTGGCATTTTTC
62 ATCA--AGG-GT-TG-CGGCAGCACATGCTGGGCTCAGG-CATGTGCTGG-TGC-CGCATTTTTC
* * * *
15588294 TTACGCCGGGATACCATCGCCGGAGAAACCTGACCGGCTGGCATTGGGGTTCCGGTGATCGGGGG
119 TT-CGTCGGG-CACCATCGCCGGAG-AACCTGA-CGGC-GACATTGGGGTTCCGGCGATCGGGGG
** * *
15588359 GGCCGGGGGGTTTGCATACATGACGTGCGATGGGTGCTGGTACTTGGCCCTTACATTGGCCCCCT
179 GGCCGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* *
15588424 ATCCCTCATCAAACCTCGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTACAGATTTGCT
244 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* * * * **
15588489 GTCAGTAGCCATTAAAGTGTCTCAAATGCGGACACTTTTTTCAAATGGTCGTAAAATCTTGTACA
309 GCCAGTAGCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * *
15588554 CTACGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAGGTCTACCAGG
374 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAG
* * *
15588619 TTTGGGGCCAAAAATCCTTCCCAAAAAATTTTAACAAATCCTGAATCACAAAAAGGTTTGAAAAT
439 TTTGGGGCCAAAAATCCTTCCCAAAAAATTTTAAAAAATCCTGAACCACAAAAA-GTTTAAAAAT
** * *
15588684 CATGAAAAATAGAAAACAAGTCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGAACCATTGT
503 TGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
*
15588749 ATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAACCCACC
568 ATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACC
* * * *
15588814 TACCACCCTATCGATCCACGGCTTGCGCATCTCATCCCTCTGGCCGGCGTAGTGCCTGCTCGCCC
633 TACCACCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTGCCAGC-CGCCC
*
15588879 GCCCGCCCGCTTGTTTTGTCGGTTGGCATT
697 GCCCGCCCGCTCGTTTTGTCGGTTGGCATT
15588909 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGCACAGGA
1 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATT-CCAGTCTAAGAT-GCAC-GGA
15588974 TCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAG
63 TCAAGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG-G
*
15589039 GCACCATCGCCGGAGAACCTGATCGGCGACATTGGGGTTCCGGCGATC-GAGGGGCCGGGGGGTT
127 GCACCATCGCCGGAGAACCTGA-CGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTT
* *
15589103 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTGTATTGG-CCCCTATTCCTCATCAA
191 TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAA
* *
15589167 ACCTTGAGAACTCACACCCCCTTAGAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAT
256 ACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAAT
* *
15589232 TAAAGTGTTTGAAATGGGGACA-TTTTTTCCAAATGGTCACAAAATCTTGTACACTTCAAGTTTT
321 TAAAGTGTCTGAAATGGGGACACTTTTTT-CAAATGGTCACAAAATCTTGTACACTTCGAGTTTT
* * *
15589296 TAGGTGAATTTTTTTTTTCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAA
385 TAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAA
* *
15589361 AACTCCTTCCCAAAAAATTTAAAAAAATCCTGAACCACAAAAAGTTTCAAAAATTGTGAAAAATA
450 AAATCCTTCCCAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTT-AAAAATTGTGAAAAATA
*
15589426 GAAAACAAGTCGTCTTGCCATGAAACTTCACCTGAAGGCTTAAGGGACCATTGTATGAATTTACA
514 GAAAACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACA
*
15589491 AGCCATAAAAATGGCATTGGCATGCAAGAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
579 AGCCATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTAT
* *
15589556 CGATCCATGGCTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCT
644 CGATCCACGGCTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTGCCAG-CCGCCCGCCCGCCCGCT
*
15589621 CGTTTTGTCGGTTGGCATA
708 CGTTTTGTCGGTTGGCATT
15589640 GGCATACGGAGTTCATTCCCAG--T---C-TA---AG---A-T-CA--C----A--C-CGGATCA
1 GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATGCACGGATCA
*
15589682 AGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCA
66 AGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGGCA
* ** *
15589747 CCATCGCCGGAGAACCTGACTGGCGACATAGGGGTTCCACCGATCGGGGGGGCCGGGGGGGTGTG
130 CCATCGCCGGAGAACCTGAC-GGCGACATTGGGGTTCCGGCGATCGGGGGGGCC-GGGGGGTTTG
*
15589812 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAAC
193 CGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAC
* *
15589877 CTCAAGAACTCACACCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTA
258 CTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTA
*
15589942 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGCTTTTAG
323 AAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAG
* * * * * * **
15590007 CTGAATTTTTTTGTGCATTCCAAGAAAAATATAAGAATCACGTCCATGAAGTTTGGGGCCAAAAA
388 CTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAAA
** ** * *
15590072 TCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTTAAAATTGTGAAAAATAGAAA
453 TCCTTCCCAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTAAAAATTGTGAAAAATAGAAA
*
15590137 ACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
518 ACAAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
15590202 ATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
583 ATAAAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGAT
* * * * *
15590267 CCACGGCTTTCGCATCCCGTCTCTCTGGTCGGCATAGTGCAAGCCTGCCCGCCCGCCTGCTCGTT
648 CCACGGCTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTGCCAGCC-GCCCGCCCGCCCGCTCGTT
* *
15590332 TCGTCGATTGGC-TT
712 TTGTCGGTTGGCATT
*
15590346 AAGCATACGGAGTTCATTCCCA
1 -GGCATACGGAGTTCATTCCCA
15590368 ATGTAAGATC
Statistics
Matches: 1336, Mismatches: 105, Indels: 70
0.88 0.07 0.05
Matches are distributed among these distances:
704 1 0.00
705 108 0.08
706 12 0.01
707 286 0.21
708 225 0.17
709 6 0.00
710 1 0.00
714 1 0.00
716 2 0.00
718 1 0.00
719 1 0.00
722 2 0.00
725 2 0.00
726 1 0.00
729 1 0.00
730 10 0.01
731 460 0.34
732 58 0.04
733 19 0.01
734 11 0.01
735 17 0.01
736 25 0.02
737 17 0.01
738 5 0.00
739 4 0.00
740 46 0.03
741 14 0.01
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (726 bp):
GGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCAGTCTAAGATGCACGGATCA
AGGGTTGCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGCAC
CATCGCCGGAGAACCTGACGGCGACATTGGGGTTCCGGCGATCGGGGGGGCCGGGGGGTTTGCGC
ACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC
GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAG
TGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG
AATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCAGGTCTACCAAGTTTGGGGCCAAAAATCC
TTCCCAAAAAATTTTAAAAAATCCTGAACCACAAAAAGTTTAAAAATTGTGAAAAATAGAAAACA
AGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATA
AAAATGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCA
CGGCTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTGCCAGCCGCCCGCCCGCCCGCTCGTTTTGT
CGGTTGGCATT
Found at i:15590542 original size:26 final size:26
Alignment explanation
Indices: 15590506--15590558 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15590496 GTTGACTTAG
*
15590506 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15590532 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15590558 G
1 G
15590559 ATCGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15591965 original size:26 final size:26
Alignment explanation
Indices: 15591936--15591988 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15591926 GTTAACTTAG
*
15591936 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15591962 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15591988 G
1 G
15591989 ATCGGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15592851 original size:26 final size:26
Alignment explanation
Indices: 15592821--15592873 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15592811 GTTGACTTAG
*
15592821 GCATACGAAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
*
15592847 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15592873 G
1 G
15592874 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15594187 original size:892 final size:889
Alignment explanation
Indices: 15591064--15600905 Score: 12248
Period size: 893 Copynumber: 11.0 Consensus size: 889
15591054 GTTGACTTAG
* * * *
15591064 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACCAAGGG-TGATGACAGCACATGCTG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTG-CGGCAGCACATGCTG
** * * *
15591127 GGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTCATTGGGGCACCATCGTCGAAGCATCGTCGGA
64 GGCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGA
* * * * *
15591192 GAACCTGACCGACGACATTGGGGTTCCGGCGATCGGGGGGGCCGAAGGTGGTGTGCGCACATGAT
129 GAACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCG--GGGGGTGTGCGCACATGAT
*
15591257 GTGCGATGGGTGCTGGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
192 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACT
** *
15591322 CATGCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGA
256 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
** * ** *
15591387 AATGCAGACAGGTTTTTTCAAATGGTCGTAAAATCTTGTACACTTCGAGTTTTTAGCAGAATTTT
321 AATGGGGACA-CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTT
* * * *
15591452 TTTGTGCATGCCAACTAAAATACAAGGATCATGTCTACCAGGGTTGGGGCCAAAA-TGCCTTCCG
385 TTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCG
* * * *
15591516 AAAAAATTTTAAAAAATCTCAAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
449 -AAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTC
* * *
15591581 GTCTTGCCTTGAAACTTCATGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAA
513 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** *
15591646 TGGCATTGGCACACAAAAATATGAAGATTTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
578 TGGCATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* * * *
15591711 TTGCGCATCCCGTCCCTCCGGGCGGCGTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
643 TTGCGCATCCCGTCTCTCTGGCCGACGTAGT---CGCCCGCCCACTCGTTTCGTCGGTTGGCTTA
* * * *
15591776 GGCATACGAAGTTCATTCCCAGTCCAAGATTGGACCAGACTGAGGGTTGCAGCAGCAGGATCGAC
705 GGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCG-C
* * * *
15591841 AGCACGTAGAGGGGGACCTGGTCGATCCCCGGCTTGCACATCCCGCCCCTCTGGCCGACTGAGCG
769 AGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCG
** *
15591906 CCCTTACGCTCGTTTCGTGGGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
834 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15591962 GCATACAGAGTTCATTCCCAGTCTAAGATCGGACCAAACCGAGGGTTGTGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15592027 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGT-----CA------GAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
15592081 ACCTGACCGACGTCATTGGGGTTCCGACGATCGGGGGGGTCAGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* * * *
15592146 GATGGGTGCTGGTTCTTGGCCTTTATAGTGGCCCCTTATCCGTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCACA
* *
15592211 CCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGTTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
15592276 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA---C---TTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15592335 GCATGCCAACAAAAATACAAGGATCATGTCTACCAGGTTTGGGGCCAAAACTCCTTCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAA
* * * *
15592400 TTTT-AAAAATCCCGAATCGCAAAAAGTTTTGAAAATCGTGAAAAATAAAAAACGAGTCATCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * *
15592464 CCATGGAACTTCATGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAACCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15592529 TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCACGGCTTGTGC
584 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* ** *
15592594 ATCCCGTCTCTCTAGCCGGTGTAGTGCTCGCCCGCCCGCTCGCCCGCTTGTTTCGTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGACGTA--G-TCGCCCGCCCACT------C--GTTTCGTCGGTTGGCT
* * * * * * * * * * *
15592659 TAGACATACAGAGTTCATTCCTAGTCTAATATCGGATCGGACCTAGGGTTACAACAACAGGATTG
703 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGA-TC
* * * * * * * **
15592724 GTAGCATGCAGAGGGGGACCCGGTCGATCCTCGGGTTGCGTATCCCTTCCCTCTGGCCGGCTGAG
767 GCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
* * * *
15592789 CGCCCGCATGCTCGTTTCATGGGTTGACTTAGGCATACGAAGTTCATTCCTAGTCTAA
832 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
15592847 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATTGAGGGTTGCGGCAGCACATGGTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * ** * ** * ** * * * **
15592912 TTCAGGCATGTGCTGGTGCCGTAATTTTCTTTGTCGAGGTGCTATCGCCGGAGCGTTACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
** *
15592977 ACCTGACCGGCGGCATTGGGGTTCCGGTGA-TCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
15593041 GATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * *
15593106 CCCCTTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
**
15593171 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTAAAGTTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
*
15593236 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTTCTTCCGAAAAAT
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAT
* * * * * *
15593301 TTTTAAAAATCCCGAACCCCATAAAGTTTTGAAAATCATAAAAAATAGAAAACGAGTCGTCTTGC
455 TTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
15593366 AATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
520 CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* *
15593431 GGCGTGCAAAAATATGAAGATGTGCCTAAACCCACCGACCACCCTATCGATCCACGGCTTGCGCA
585 GGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
* * *
15593496 TCCCATCTTTCTGGCCGACGTAGT-GCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACAGA
650 TCCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * ** * * *
15593560 GTTCATTCCCAGTCTAACATCGGACCGGACCAAGGGTTGCAGTAGCAAAATTTGCACCACATAGA
715 GTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGA-TCGCAGCACGTAGA
* *
15593625 GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGTCCCTCTGGCTGGCTGAGCGCCCGCACGCT
779 GGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCT
* **
15593690 CGTTTCGTGGGTTGACATAGGCATACAAAGTTCATTCCCAGTCTAA
844 CGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * ** *
15593736 GCATACGGAGTTCATTCCTC-GTCTAAGATCGAATCGGATTGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGGAGTTCATTCC-CAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
15593800 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGTCTGATCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * *
15593865 AACCTGACCGGCAGCCTTGGGGTTCCGACGATTGGGGGGGCCGGGGGAGGTGTGCGCACATGGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCC-GGGG-GGTGTGCGCACATGATG
* * *
15593930 TGCGATGGGTGCTGGTACTTGGCCCTTATATTTGCCCTCTATTCCTCATCAAACCTCAAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC-CTATCCCTCATCAAACCTCGAGAACTC
* * * *
15593995 ACACCCCCATAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCATTAGCCATTAAACTATCTGAA
257 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
15594060 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
322 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15594125 TATGCAAGCTAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAAAC-CCTTCCGAA
387 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCGAA
* * * * * *
15594189 AAAATTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTC
451 AAATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTC
*
15594254 TTGCCATGAAACTTCACGTGAAGGCTTAAGCGACCATTGTATGAATTTACAAGCCATAAAAATGG
516 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* *
15594319 CATTCGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
581 CATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
15594384 CGCATCCCGTCTCTCTGGCCGGA-GTAGTGCCCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
646 CGCATCCCGTCTCTCTGGCC-GACGTAGT---CGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGG
* ** * *
15594448 CATACAGAGTTCATTCATAGTCTAAGATCAGATCAGACCGAGGGTTGCGAG-AGCAGGATCGGCA
707 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGC-AGCAGCAGGATC-GCA
* * * * *
15594512 GCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGGCTGAGCAC
770 GCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * * * *
15594577 CCGTACACTCATTTCGTTGGTTGGCTTAGACATACGGAGTTCATTCCCAGTCTAA
835 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15594632 GCATATGGAGTTCATTCCCAGTCTAAGATC-AGACCGGACTGAGTGTTACGGCAGCAGATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
15594696 GCTCGGGCATGTGCTGGTGCGACATTTTTCTTCATCGGGGCACCATCATCGGATCATCGCCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * *
15594761 AACCTAACCGGCGGCCTTGGGGTTTCGACGA-TCGGGGGGCCGAGGGGGTGTGCGCACATGGTGT
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCG-GGGGGTGTGCGCACATGATGT
* *
15594825 GTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTCTCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
15594890 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * * *
15594955 TGGGGACACTTTTTTCAAATTGTCACAAAATCTTGAACAGTTCGAGTTTTTAGCTGAATTGTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* *
15595020 GTGCATGCCAACAAAAATACAAGAATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAA
* * * * * *
15595085 AATTTTAAAAAATCTCGAGCCACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTTGTCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* **
15595150 TGCCATGAAACTTAACACGAAGGCTTAAGGGACCATTGTATGAATTT---A--C-----AA--GC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15595203 -----CAT--AAAAATATGAAGATGTGCGTAAACCCACCTACCACTCTATCGATCCACGGCTTAC
582 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * *
15595261 GTATCCCATCTTTTTGGCTGACGTAGTGCCCGCCCGCCCGCCCGCTCGCTCATTTCGTGGGTTGG
647 GCATCCCGTCTCTCTGGCCGACGTAGT-------CGCCCGCCCACTCG----TTTCGTCGGTTGG
** * * *
15595326 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCAGACCGAGAGTTGCGGCAGCAAGAT
701 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGAT
* * * ** * *
15595391 CGACAGCATGCAGAGGGGGACCCGACCGATCCTTGGCTTGCGCATCCTGCCCC-CTTGGCCGACT
766 CG-CAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTC-TGGCCGGCT
* * * *
15595455 GAGCACCCGCACGCTCGTTTCATGGGTTAACTT-GGCATACGGAGTTCCTTCCCAGTCTAA
829 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
15595515 GCATACAGAGTTTATTTCCAGTATAAG-TC-AGACTAGACTGAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGGCAGCACATGCTGG
* * * *
15595578 GCTCGGGCATATGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAG
* * * * * * *
15595643 CACTTGACCGGCGACATTGGGGTTTCGGCGA-TCGGGGGGCCGGGGGGTGTGCGCAAATGATGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
15595707 TGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCTCTCCCTCATCAAACCTCGAGAACTCACA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15595772 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15595837 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGTTGAATTTTTTTGA
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * *
15595902 GCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAACTCGTCCCGAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAAA
* * * * *
15595967 TTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGGGTTGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* * * * *
15596032 CCTTCAAAGTTCACGTGAAGGCTTAAGGGAACATTGTATGAACTTACAAGCCATAAAAATGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * *
15596097 TGGCA--CATAGAAATATGAAGATGTGCCTAAACGCACTTACCACCCTATCGATACACGGCTTGC
584 TGGCATGCA-A-AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * * * * *
15596160 GCATCCCGTCTCTCAGCCAGCGTAGTGCCCGCCCACTCGCCCGCCCGCTCATTTCATCGATTGGC
647 GCATCCCGTCTCTCTGGC--CG-A-----CG--TAGTCGCCCGCCCACTCGTTTCGTCGGTTGGC
* * * ** *
15596225 TTAGGTATACGAAGTTCATTCCCAGTCTAAGATCGGATCAGACTAAGGGTTGCGGCAGCAGGATC
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGAT-
* ** * * * *
15596290 CGCAGCACGCAGAGGGGGACCCGATCGATCCTCGGCTTGTGCATCTCGCCCCTCTGGCCGGTTGA
766 CGCAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
15596355 GCGCCTGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCA-TCCCAGTCTAA
831 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
15596413 G-AT-C-G-G---------A--C------CG-----GACCGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15596452 CTCGGGCATGTGCTGGTGTCACATTTTTCTTCATTGGGGCACCATCG-CAGGAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTC-GGAGCATCGCCGGAG
* * * ** *
15596516 AACCTGACCGACGGCATTAGGGTTCTGGTGATTGGGGGGGCCGGGGGGTGTGCGCACATGACGTG
130 AACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * *
15596581 TGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCCAAAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCAC
** *
15596646 ACCCCCTTAAAGTTCGTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15596711 -GGGACACTTTTTTCAAATGCTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
*
15596775 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCGAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
* *
15596840 ATTTTAAAAAATCCCGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15596905 ACCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15596970 TTGGCATGCAGAAATATGCAGATGTCCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
583 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
*
15597035 CATCCCGTCTCTCTGGCCGACATAGTGCCCGCCCGTCCGTCTGCACACTCGTTTCGTCGGTTGGC
648 CATCCCGTCTCTCTGGCCGACGTAGT---CG--C--CCG-C--C-CACTCGTTTCGTCGGTTGGC
* * *
15597100 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGATCGTGGGTTGCAGCAGCAGGATT
702 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATC
* * * * ** *
15597165 GACGGCACGCAGAAGGGGA-CTGATCGATCCCCGACTTGCGCATCCCGCCCCTCTGGCCGGCTGA
767 G-CAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
* *
15597229 GCGCCCACACGCTCGTTTCGTGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
831 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15597288 GCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * *
15597353 CTCAGGCATTTGCTGGTGCCACATTTTTCTTCACCGGAGCACCATCGTCGGAGTATCACCGGAAA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * *
15597418 ACCTGACCGGCGACGTTGAGGTTCCGACGATTGGGGGGGTCGGGGGGTGTGTGCGCACATGATGT
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGG-CCGGGGG-GTGTGCGCACATGATGT
* * *
15597483 GCAATGGCTGCTGGTACTTGGCCCTTATAGTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15597548 AACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
258 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
15597613 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA---C---TTTTTAGCTGAATTTTTTT
323 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15597672 GTGCATGCCAACAAAAATACACGGATCACGTCTACCAAGTTTGGGGCTAAAACTCCTTCCAAAAA
388 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAA
* *
15597737 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
452 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* ** *
15597802 CGCCACAAAACTTCACGTGAAAGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
517 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * * * *
15597867 ATTAGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTGCCACGCTATCGATCCATGGCTTGC
582 ATTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * * *
15597932 GGATCCCGTCTCTCTGGCC-AGCGTAGTGCCCGCCCGCCCGCCCGCTCATTTTGTCGATTGGCTT
647 GCATCCCGTCTCTCTGGCCGA-CGTAGT-------CGCCCGCCCACTCGTTTCGTCGGTTGGCTT
* * * *
15597996 AGGCATACAGAGTTCATTCCCAGTCTAAGATCCGACCAGATCGAGGGTTGCGGCAGCAGGATCGC
704 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGC
* * * *
15598061 TAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCTGGTTGAGT
769 -AGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGC
*
15598126 GCCCGCACGCCCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
833 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * **
15598183 GCATACGAAGTTCATTCCCAGCCTAAGATCGAACCTGTCCGAGGGTTGCAGCAGTACATGCAAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** *
15598248 CTCGAG-ATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* *
15598312 ACCTGACCGACGGCATTGGGGTTCCGGA-GATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
131 ACCTGACCGGCGGCATTGGGGTTCC-GACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* * * *
15598376 CGATGGCTGTTGGTACTTGGCCCTTATAGTGGCCCCTTATCCCTCATCAAACCTCGAGAACTCAA
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCC-TATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
15598441 ACCCCTTTAAAGAGCATTTGAGATTTTATAGGTTTGCTACTAGTAGCCATTAAAGTGTCTAAAAT
259 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15598506 GGAGACACTTTTTTCAAATGGTCACAAAATCTTGTACA---C---TTTTTAGCTGAATTTTTTTG
324 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *
15598565 TGCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAA
389 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAA
* * * *
15598630 ATTCTAAAAAATCCCGAACCGTAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
453 ATTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15598695 GCCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
518 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
** * * * *
15598760 TTGGCACACAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCAATCCATGACTTGCG
583 TTGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
15598825 CATCTCGTCTCTCTAGCCGGCGTAGTGCTCGCCCGCCCGCCCGTTCGTTTCTTCGGTTGGCTTAG
648 CATCCCGTCTCTCTGGCCGACGTA--G-TCGCCCG-CC-CAC--TCGTTTCGTCGGTTGGCTTAG
* * * * ** * * * *
15598890 CCATACGGAGTTCACTCCCAGTCTAACATCAGACTGGACTGAGGGTTGCGGTAGCAAGATCGGCA
706 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATC-GCA
* * * * * *
15598955 GCATGGAGAGGGGGACCCGGCTGATCCCCGGCTTACGCATCTCACCCCTCTGGCCGGCTGAGCGC
770 GCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGC
* * * *
15599020 GCGTACGCTCGTTTCGTGCGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
835 CCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15599075 GCATATGGAGTTCATTCCCAATCTTAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * * * * * * *
15599140 CTCGGACATCTGCTGGTGCCGCATTTTTCTTCACCGCGGCACCATCATCGAAGCATCGTCGGCGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * * *
15599205 ACCTGACCGGTGGCATTAGGGTTTCGGCGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15599270 GATGGGTGCTGGTACTTGGCCCTTATATTGGTCACCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
15599335 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
15599400 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA---C---TTTTTAGCTGAATTTTTTTGT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15599459 GCATGCCAACAAAAATGCAAGGATCACGTCTACCAAGTTTAGGGCCAAAACTCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAA
* * *
15599524 TTCTAAAAAATCCCGAACCGCAAAAAATTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
15599589 CCATGAAACTTCACGTGAATGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATAGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
** * * * *
15599654 TGGCACACAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCAATCCATGACTTGCGC
584 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * **
15599719 ATCTCGTCTCTCTAGCCGGCGTAGTGCTCGCCCGCCCGCCCGTTCGTTTCTTCGGTTGGCTTAAC
649 ATCCCGTCTCTCTGGCCGACGTA--G-TCGCCCG-CC-CAC--TCGTTTCGTCGGTTGGCTTAGG
* * * ** * ** * *
15599784 CATACGGAGTTCACTCCCAGTCTAACATCAGACTGGACTGAGGGTTGTGGTAGCAAGATCGACAG
707 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCG-CAG
* * * * * * *
15599849 CATGGAGAGGGGGACCCGGCTGATCCCCGGCTTACGCATCTCACCCCTCTGGCCGGCTGAGCGCG
771 CACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCC
* * *
15599914 CGTACGCTCGTTTCGTGCGTTAACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 CGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15599968 GCATATGGAGTTCATTCCCAATCTTAGATCGGACCAGACCGAGGGTTGCGGCAGCACATGCTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * *
15600033 CTCGGGCATCTGCTGGTGCCGCATTTTTCTTCACCACGGCACCATCATCGAAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
* * * * *
15600098 ACCTGACCGGTGGCATTAGGGTTTCGACGATCGGGGGGGTCGGGGGGTGTGCGCACATGATGTGC
131 ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
15600163 GATGGGTGCTGGTACTTGGCCCTTATATTGGTCCCCTATCCCTCATCAAACCTTGAGAACTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGG-CCCCTATCCCTCATCAAACCTCGAGAACTCACA
15600228 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
260 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15600293 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGTTGACTTTTTTTAT
325 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * * * *
15600358 GCATGCCAACAAAAATAGAAGAATCACATCTACCAAGTTTGGGGCCAAAATTCCTTCCAAAAAAA
390 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GAAAAA
* * * *
15600423 TTTTAAAAAATCCCGAACTGCAAAAAGTTTCAAAAATGGTGAAAAATAGAAAACGAGTCATCTTG
454 TTTTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTG
* *
15600488 CCAGGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAAAGGCAT
519 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
* * * *
15600553 TGGCATGCAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCGATCCATGGCTTGTGC
584 TGGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
*
15600618 ATCCCGTCTCTCTGGCCGACGTAGTGCCCTCCCGCCCGTCCGCCCACTCATTTCGTCGGTTGGCT
649 ATCCCGTCTCTCTGGCCGACGTA--G---T--CG--C--CCGCCCACTCGTTTCGTCGGTTGGCT
* * * *
15600683 TAGGCATACGGAGCTCATTCCCAGTCTAAGATCGAACCAGATCGCGGGTTGCAGCAGCAGGATCG
703 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCG
* * * * ** * *
15600748 ACAACACATAGAGGGGGGCTCGATCGATCCCCGGCTTGCGCATCTCGACCCTCTGGCCGGCTGAG
768 -CAGCACGTAGAGGGGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAG
** * *
15600813 CAG-CCATACGCTCGTTTCGCGAGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
832 C-GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
*
15600871 GCATACGGAGTTCATTCCCAGTCTAAGCTCGAACC
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACC
15600906 GTAAAAAGTT
Statistics
Matches: 7940, Mismatches: 818, Indels: 367
0.87 0.09 0.04
Matches are distributed among these distances:
864 2 0.00
866 1 0.00
867 2 0.00
869 1 0.00
871 4 0.00
872 4 0.00
873 108 0.01
874 451 0.06
875 190 0.02
876 74 0.01
877 201 0.03
878 90 0.01
879 3 0.00
880 324 0.04
881 52 0.01
882 124 0.02
883 54 0.01
884 178 0.02
885 408 0.05
886 2 0.00
887 42 0.01
888 7 0.00
889 310 0.04
890 17 0.00
891 12 0.00
892 1141 0.14
893 1162 0.15
894 423 0.05
895 461 0.06
896 361 0.05
897 19 0.00
898 549 0.07
899 357 0.04
900 10 0.00
901 384 0.05
902 26 0.00
903 337 0.04
904 37 0.00
905 3 0.00
906 2 0.00
907 5 0.00
909 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (889 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCCGGAGA
ACCTGACCGGCGGCATTGGGGTTCCGACGATTGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCTATCCCTCATCAAACCTCGAGAACTCACAC
CCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGG
GGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTG
CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATT
TTAAAAAATCCCGAACCGCAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCC
ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
GCATGCAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
CCCGTCTCTCTGGCCGACGTAGTCGCCCGCCCACTCGTTTCGTCGGTTGGCTTAGGCATACGGAG
TTCATTCCCAGTCTAAGATCGGACCAGACCGAGGGTTGCAGCAGCAGGATCGCAGCACGTAGAGG
GGGACCCGGCCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCG
TTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15594643 original size:26 final size:26
Alignment explanation
Indices: 15594607--15594658 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15594597 TTGGCTTAGA
15594607 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
*
15594633 CATATGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15594659 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAG
Found at i:15597298 original size:26 final size:26
Alignment explanation
Indices: 15597262--15597314 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15597252 GTTGACTTAG
15597262 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15597288 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15597314 G
1 G
15597315 ATAGGACCAG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15598194 original size:26 final size:26
Alignment explanation
Indices: 15598157--15598209 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15598147 GTTGACTTAG
* *
15598157 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
15598183 GCATACGAAGTTCATTCCCAGCCTAA
1 GCATACGAAGTTCATTCCCAGCCTAA
15598209 G
1 G
15598210 ATCGAACCTG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGCCTAA
Found at i:15600876 original size:26 final size:26
Alignment explanation
Indices: 15600845--15600898 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
15600835 GTTGACTTAG
15600845 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15600871 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15600897 GC
1 GC
15600899 TCGAACCGTA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15601613 original size:26 final size:26
Alignment explanation
Indices: 15601577--15601629 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15601567 TACTTGGCCC
* *
15601577 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15601603 GCATACGGAGTTCATTCCCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15601629 G
1 G
15601630 ATCAGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15601764 original size:245 final size:243
Alignment explanation
Indices: 15601332--15601819 Score: 674
Period size: 245 Copynumber: 2.0 Consensus size: 243
15601322 GTTGACTTAG
* * **
15601332 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCCAAGATCGGACTGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCCAAGATCAGACCAGAC
* * * *
15601397 CGAGGGTTGCGGCAGCACATGTTGGGCTTGCGCATGTGCTGGTACCACATTTTTCTTCACCGGGG
66 CGAGGGTAGCGGCAGCACATGCTGGGCTCGCGCATATGCTGGTACCACATTTTTCTTCACCGGGG
* *
15601462 CACCATCACCAGAGCATCGTAGGAGAACCTTAACGGCGGCATTGAGGTTCTGACGATCGGGGGGG
131 CACCATCACCAGAGCATCGTAGGAGAACCTGAACGACGGCATTGAGGTTCTGACGATCGGGGGGG
* *
15601527 TCGGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
196 TC-GGG-GGGTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTAGCCC
* * *
15601577 GCATACGGAGTTCATTCGCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCAGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCCAAGATCAGACCAGAC
* * * ** ***
15601642 CGAGGGTAGCGGTAGCACATGCTGGGCTCGGGCATATGCTGGTGCCGTATTTTTCTTCGTTGGGG
66 CGAGGGTAGCGGCAGCACATGCTGGGCTCGCGCATATGCTGGTACCACATTTTTCTTCACCGGGG
** * * *
15601707 CACCATTGCTAGAGCATCGCT-GGAGAACCTGACCGACGGCATTGGGGTT-TCGACGATCGGGGG
131 CACCATCACCAGAGCATCG-TAGGAGAACCTGAACGACGGCATTGAGGTTCT-GACGATCGGGGG
15601770 GGTCGGGGGGTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTAGCCC
194 GGTCGGGGGGTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTAGCCC
15601820 TTATATTGGC
Statistics
Matches: 213, Mismatches: 28, Indels: 6
0.86 0.11 0.02
Matches are distributed among these distances:
243 41 0.19
244 4 0.02
245 167 0.78
246 1 0.00
ACGTcount: A:0.19, C:0.24, G:0.33, T:0.24
Consensus pattern (243 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAATCCAAGATCAGACCAGAC
CGAGGGTAGCGGCAGCACATGCTGGGCTCGCGCATATGCTGGTACCACATTTTTCTTCACCGGGG
CACCATCACCAGAGCATCGTAGGAGAACCTGAACGACGGCATTGAGGTTCTGACGATCGGGGGGG
TCGGGGGGTGTGCGCACATCATGTGCGATGGGTGCTGGTACTTAGCCC
Found at i:15602515 original size:26 final size:26
Alignment explanation
Indices: 15602479--15602531 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15602469 GTTGATTTAG
* *
15602479 GCATACGGAGTTCATTGCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15602505 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15602531 G
1 G
15602532 ATCCGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.26, C:0.21, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15604136 original size:26 final size:26
Alignment explanation
Indices: 15604100--15604153 Score: 108
Period size: 26 Copynumber: 2.1 Consensus size: 26
15604090 TGGGTTGACT
15604100 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
15604126 TAGGCATACGGAGTTCATTCCCAGTC
1 TAGGCATACGGAGTTCATTCCCAGTC
15604152 TA
1 TA
15604154 AGATTGGATC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.24, C:0.26, G:0.22, T:0.28
Consensus pattern (26 bp):
TAGGCATACGGAGTTCATTCCCAGTC
Found at i:15607066 original size:711 final size:711
Alignment explanation
Indices: 15605683--15607188 Score: 2127
Period size: 711 Copynumber: 2.1 Consensus size: 711
15605673 CGGTTGAGCA
* * * *
15605683 CCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGATC
1 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
** * * * *
15605748 AGACATAGGGTTACGATAGCAAATGCTGGGCTCGAGCATGTGCTGGTGTCGCATTTTTCTTCGTC
66 AGACCGAGGGTTGCGACAGCAAATGCTGGGCTCGAGCATGTGCTGGTGTCCCATTTTTCTTCGCC
* * * * *
15605813 GGGGCACCGTCACCGAAGCATCGCCAGAGAACTTGACCGGCGGCATTGGGGTTCCGGCGATCGGG
131 AGGGCACCATCACCGAAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
* * *
15605878 GGGCTAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCTCC
196 GGGCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCC
*
15605943 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGC
261 TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGC
* *
15606008 TACCAGTAGCCAATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTACAAAATCTTGTA
326 TACCAGTAGCCAATTAAAGTGTCTG-AATGGGGACAC---TATCAAATGGTCACAAAATCTTGTA
* *
15606073 CACTTCGAGTTTTTAGCTTAATTTTTTTGCGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
387 CACTTCGAGTTTTTAGCTGAATTTTTTTACGCATGCCAAAAAAAATACAAGGATCACGTCTACCA
* ** * *
15606138 AGTTTGGATCCAAAAATTCTTCCAAAAAAATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAA
452 AGTTTGGAGCCAAAAAGCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTCAAA
15606203 AATCGTGAAAATAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
517 AATCGTGAAAATAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCAT
*
15606268 TGTATGAATTTAAAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
582 TATATGAATTTAAAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCC
* *
15606333 ACCTACCACCCTATCAATCCACGGCTTGCGCATC-CTGTCTCTCTGGCCGGCGTAGTGCCCGCCT
647 ACCTAACACCCTATCAATCCACGGCTTGCGCATCTC-GTCTCTCTGGCCGGCGTAGTGCCCGCCC
15606397 G
711 G
** *
15606398 CCCGCCCGCTCGTTTCATTAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACC
1 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * *
15606463 AGACCGACGGTTGCGACAGCACATGCTGGGCTCGGGCATGTGCTGGTG-CACCATTTTTCTTCGC
66 AGACCGAGGGTTGCGACAGCAAATGCTGGGCTCGAGCATGTGCTGGTGTC-CCATTTTTCTTCGC
** * ** *
15606527 CAGGGCACCATCGTCGGAGCATCATC-GAAGAACCTGACCGACGGCATTGGGGTTTCGACGATCG
130 CAGGGCACCATCACCGAAGCATCGCCAG-AGAACCTGACCGACGGCATTGGGGTTCCGACGATCG
* *
15606591 AGGGGGTCGAGGGTGGTGTGCGCACATGATGTGTGGTGGGTGCTAGTACTTGGCCCTTATATTGG
194 -GGGGG-CGAGGG-GGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGG
*
15606656 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGG
256 CCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGG
* * * * *
15606721 TTTGCTGCCAGTAGCC-ATTACAG-GTTTG-CTGGTAGTAGC-C-ATCAAATGGTCACAAAATCT
321 TTTGCTACCAGTAGCCAATTAAAGTGTCTGAATGG--GGA-CACTATCAAATGGTCACAAAATCT
* * * *
15606781 TGTACACTTTGAGTTTTTAGCTGAATTTTTTTATGCATGCCAATAAAAATAC-AGTGATCATGTC
383 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTACGCATGCCAAAAAAAATACAAG-GATCACGTC
* ** * * *
15606845 TACCAAGTTTGGGGCCAAATCGCCTTTCGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAG-TT
447 TACCAAGTTTGGAGCCAAAAAGCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTT
*
15606909 TCAAAAATCGTGAAAA-ATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
512 TCAAAAATCGTGAAAATA-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *** *
15606973 GACCATTATATGAATTTACAAGCCATAAAAATGGCATTGGCTTGCAGAAATATGAAGATGTGCTT
576 GACCATTATATGAATTTAAAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCT
* * *
15607038 AAACCCACCTAACAGCCTATCGATCCACGGCTTGCGCATCTCGTCTCTCTGGTCGGCGTAGTGCC
641 AAACCCACCTAACACCCTATCAATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCC
15607103 CGCCCG
706 CGCCCG
* * *
15607109 CCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACC
1 CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
15607174 -GAACCGAGGGTTGCG
66 AG-ACCGAGGGTTGCG
15607189 GTACCAAGAT
Statistics
Matches: 703, Mismatches: 76, Indels: 28
0.87 0.09 0.03
Matches are distributed among these distances:
710 2 0.00
711 258 0.37
712 126 0.18
714 5 0.01
715 163 0.23
716 12 0.02
717 12 0.02
718 125 0.18
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (711 bp):
CCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
AGACCGAGGGTTGCGACAGCAAATGCTGGGCTCGAGCATGTGCTGGTGTCCCATTTTTCTTCGCC
AGGGCACCATCACCGAAGCATCGCCAGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCGGG
GGGCGAGGGGGTGTGCGCACATGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCC
TATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGC
TACCAGTAGCCAATTAAAGTGTCTGAATGGGGACACTATCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTACGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTT
TGGAGCCAAAAAGCCTTCCAAAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTTCAAAAATC
GTGAAAATAAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATA
TGAATTTAAAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCT
AACACCCTATCAATCCACGGCTTGCGCATCTCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG
Found at i:15607328 original size:26 final size:26
Alignment explanation
Indices: 15607298--15607350 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15607288 GTTGACTTAG
*
15607298 GCATACAGAGTTCATTCCTAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15607324 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15607350 G
1 G
15607351 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15608238 original size:26 final size:26
Alignment explanation
Indices: 15608201--15608253 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15608191 GTTGACTTAG
*
15608201 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15608227 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15608253 G
1 G
15608254 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15608508 original size:903 final size:895
Alignment explanation
Indices: 15606428--15608978 Score: 3523
Period size: 903 Copynumber: 2.8 Consensus size: 895
15606418 GTTGGCTTAG
*
15606428 GCATACGGAGTTCATTCCCAGTCTAAGATC-AGACCAGACCGACGGTTGCGACAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGA-ACCAGACCGAGGGTTGCGACAGCACATGCTGG
* * * *
15606492 GCTCGGGCATGTGCTGGTGCACCATTTTTCTTCGCCAGGGCACCATCGTCGGAGCATCATCGAAG
65 GCTCGGGCATGTGCTGGTGCA-TATTTTTCTTCGCCGGGGCACCATCCT-GGAGCATCATCGGAG
* *
15606557 AACCTGACCGACGGCATTGGGGTTTCGACGATCGAGGGG-GTCGAGGGTGGTGTGCGCACATGAT
128 AACCTGACCGGCGGCATTGGGGTTTCGACGATCGAGGGGCCT-G-GGG-GGTGTGCGCACATGAT
15606621 GTGTGGTGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
190 GTGTGGTGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
* * *
15606686 CACACCCCCTTAAAGAGCATTTGAGATTTTAAAGGTTTGCTGCCAGTAGCCATT-ACAGGT-T--
255 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAA
* **** **
15606747 -TGCTGG-TAGTAGCCATCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTT
320 ATG-GGGATAGT-TTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTT
* * * *
15606810 TTTATGCATGCCAATAAAAATAC-AGTGATCATGTCTACCAAGTTTGGGGCCAAATCGCCTTTCG
383 TTTGTGCATGCCAACAAAAATACAAG-GATCATGTCTACCAAGTTTGGGGCCAAAAC-ACTTTCG
* *
15606874 AAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTC
446 AAAAAATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
*
15606939 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAA
511 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
* * * *
15607004 TGGCATTGGCTTGCAGAAATATGAAGATGTGCTTAAACCCACCTAACAGCCTATCGATCCACGGC
576 TGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC
* *
15607069 TTGCGCATCTCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCCGCCCG-CTCGTTTCGTCGGTTG
641 TTGCGCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTGCCCGACTCGTTTCGTCGGTTG
* * * *
15607133 GCTTAGGCATACAGAGTTCATTCCTAGTCTAAGATCGGACCGAACCGAGGGTTGCGGTACCAAGA
706 GCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACAG-ACCGAGGGTTGCGGTAACAAGA
** * *
15607198 TCGAAAGCACACAGAGGGGGACCCGGTCGATCCCCGACTTACGCATCCCACCCCTCTGGTCGGCT
770 TCGAAAGCACACAGAGGGGGACCCGACCAATCCCCGACTTACGCATCCCACCCCTCTGGCCGGCT
* * *
15607263 GAGCGCCCGCGCGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCTAGTCTAA
835 GAGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * * * *
15607324 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACCGAGAGTTGTGATAGCACATTCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* * ** *
15607389 CTCGAGCATGTG-TCGGTGTCATATTTTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGGAA
66 CTCGGGCATGTGCT-GGTG-CATATTTTTCTTCGCCGGGGCACCATC-CTGGAGCATCATCGG-A
* * * * *
15607453 GAACCTGACCGGCGGCATTGGGGTTTCGATGATCGGGGGGCC-GGGGGGTTTTCGCACGTGATGT
127 GAACCTGACCGGCGGCATTGGGGTTTCGACGATCGAGGGGCCTGGGGGGTGTGCGCACATGATGT
* * * *
15607517 GTGGTGGGTGCTGGTAATTGGCCCTTATATTGGCCTCCTATCCCTCATCAAACCTTGAGAACTCA
192 GTGGTGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15607582 CACCCCCTTAAAGAGCCTTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTCAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCT-AAA
*
15607647 TGGGGATAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTT
321 TGGGGATAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* * *
15607712 GTGCATTCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGACCAAAACTCTTTCTGAAAA
386 GTGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACTTTC-GAAAA
* ** * *
15607777 AATTTTAAAAAATCCTGAACCGTAAAAAGTTTTGAAAATCGTGAAAAATAGAAAACGACTTGTCT
450 AATTTTAAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* * *
15607842 TGCCATGAAACTTAACGTGAAGGGTTAAGGGACCATTGTATGAATTTACAAGACATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
** *
15607907 ATTGGCACACAGAAATATGAAGATGTGCCCAAACCCACCTACCACCCTATCGATCCACGGCTTGC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
15607972 GCATCCCGTCTCCCTGGTCGGCGTAGTGCCCGCCCGCCTGCCCGTACACTCGTTTCGTCGGTTGG
645 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTGCCCG---ACTCGTTTCGTCGGTTGG
* * * *
15608037 CTTAGGCATACGGACTTCATTCCCAGTCTAAGATCAGATCAGATCGAGGGTTGCGGTAACAGGAT
707 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTGCGGTAACAAGAT
** * * * * *
15608102 CGGTAGCACGCAGAGGGGGACCCGACCAATCGCCGGCTTATGCATCCCTCCCCTCTGGCCGGCTG
771 CGAAAGCACACAGAGGGGGACCCGACCAATCCCCGACTTACGCATCCCACCCCTCTGGCCGGCTG
* *
15608167 AGCACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
836 AGCACCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
* * *
15608227 GCATACGAAGTTCATTCCCAGTCTAAGATCGAACCGGACCGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGGG
* *
15608292 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTCGGGGCACCATCACTGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTG-CATATTTTTCTTCGCCGGGGCACCATC-CTGGAGCATCATCGGAGA
* * * *
15608357 ACCTGATCGGCAGCATTGGGGTTTCGGCGATCGAGGGGCCTGGGGGGTGTGCGCACATGATGTGC
129 ACCTGACCGGCGGCATTGGGGTTTCGACGATCGAGGGGCCTGGGGGGTGTGCGCACATGATGTGT
* * *
15608422 GGTGGGTGCTTGTTCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACG
194 GGTGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15608487 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCAATTAAAGTGTCTAAAATG
259 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCT-AAATG
* * * *
15608552 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTATCTGATTTTTTTTGT
323 GGGATAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGT
* * **
15608617 CCATGCCAACAAAAATACAAGGATCACGTCTACC-A-TTTGGGGCCAAAACACCTACCG-AAAAA
388 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACA-CTTTCGAAAAAA
* * * * * * *
15608679 TTTTTAAAAATTCTCG-ACATGCAAAAAGTTTCAAAAATCATGGAAAATAAAAAACGAGTCGTCC
452 TTTTAAAAAATCCT-GAAC-CGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15608743 TGCCATGAAACTTCACATGAAGGCTTAAGGGACCTTTGTATGAATTTACAAGCCATAAAAATGGC
515 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * *
15608808 ATTGGCATGCAGAAATATGAAGATCTGCCTAAACCGACCTACCACCCTATCGATCCATGGCTTGC
580 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* *
15608873 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCG-CT----GA----TTTCGTCGGTTGGCTT
645 GCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTGCCCGACTCGTTTCGTCGGTTGGCTT
* *
15608929 AGGCATATGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTG
710 AGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CAGACCGAGGGTTG
15608979 TGGCTGCACA
Statistics
Matches: 1462, Mismatches: 168, Indels: 57
0.87 0.10 0.03
Matches are distributed among these distances:
889 60 0.04
893 1 0.00
894 126 0.09
895 8 0.01
896 108 0.07
897 40 0.03
898 5 0.00
899 319 0.22
900 29 0.02
901 202 0.14
902 42 0.03
903 519 0.35
904 3 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (895 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGAACCAGACCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCATATTTTTCTTCGCCGGGGCACCATCCTGGAGCATCATCGGAGAAC
CTGACCGGCGGCATTGGGGTTTCGACGATCGAGGGGCCTGGGGGGTGTGCGCACATGATGTGTGG
TGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAATGTCTAAATGGGG
ATAGTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCA
TGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACACTTTCGAAAAAATTTT
AAAAAATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
CGTCTCTCTGGTCGGCGTAGTGCCCGCCCGCCTGCCCGACTCGTTTCGTCGGTTGGCTTAGGCAT
ACGGAGTTCATTCCCAGTCTAAGATCGGACAGACCGAGGGTTGCGGTAACAAGATCGAAAGCACA
CAGAGGGGGACCCGACCAATCCCCGACTTACGCATCCCACCCCTCTGGCCGGCTGAGCACCCGCA
CGCTCGTTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAA
Found at i:15610315 original size:26 final size:26
Alignment explanation
Indices: 15610279--15610328 Score: 91
Period size: 26 Copynumber: 1.9 Consensus size: 26
15610269 GACTTAGGCA
*
15610279 TATGGAGTTCATTTCCAGTCTAAGCG
1 TATGGAGTTCATTCCCAGTCTAAGCG
15610305 TATGGAGTTCATTCCCAGTCTAAG
1 TATGGAGTTCATTCCCAGTCTAAG
15610329 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.24, C:0.20, G:0.22, T:0.34
Consensus pattern (26 bp):
TATGGAGTTCATTCCCAGTCTAAGCG
Found at i:15611210 original size:26 final size:26
Alignment explanation
Indices: 15611173--15611225 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15611163 GTTGACTTAG
15611173 GCATACGAAGTTCATTCCCAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
* *
15611199 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGAAGTTCATTCCCAGTCTAA
15611225 G
1 G
15611226 ATCGAACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGAAGTTCATTCCCAGTCTAA
Found at i:15612662 original size:902 final size:901
Alignment explanation
Indices: 15609431--15615452 Score: 7405
Period size: 915 Copynumber: 6.7 Consensus size: 901
15609421 GTTGGCTTAG
* * ** ** *
15609431 GCATACGGAGTTCATTCCCACTCTAAGATCAGACTAGAATGAGGGTTACGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** * * * * * *
15609496 CTTAGGCATGTGCTGGGGCTGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCAGCGTCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
** * * * * * * * *
15609561 ACCTGACCGGTGGCATTGGGGTTCTGAAGATC-CGGCGCCCGGGGGGGTGTGCGCATATGATGTG
131 ACCTGACCGACGACATCGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* **
15609625 CGA-GGGTGCTGGTACTTGGCCCTTATATTGGCCCTATATCCCTCATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15609689 GCCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAACT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15609754 GGGGACACTTTTTTCGAATGGTCACAAAATCTTGTACACTTCCAGTTTTTCGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
15609819 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCGAAAA-TACTTCTGAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCC-AAAACTCCTTCCAAAAA
* * * *
15609883 AATTTTAAAAAATCCCGAACCGCAAAAAGTTTAAAAAATCCTGAAAAATAGAAAACGAGTCGTCT
454 AAATTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-AGTCGTCT
*
15609948 TGCCATGAAACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
15610013 ATTGGCATGCT-GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
583 ATTGGCACG-TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTG
* * * *
15610077 CGCATCCCGTATCTCTGGCCGACGTAGTTCCCGCCCGCCTG--C--CCGCTCGTTTCATCGGTTG
647 CGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCATCCGCTCGTTTCGTCGGTTG
* *
15610138 GCTTAGCCATACGGAGTTCATT--C---C------C--A--GG--C------TA----AGAAGGA
711 GCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAAGGTTACGGCAGCAGGA
* * * * * *
15610176 TCGGCAGCACGAAGTGGGGGACAC-AGTCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGC
776 TCGGCAGCACGCAGAGGGGGACCCGA-TCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * * * * *
15610240 TAACCGCCCGCGCGCTCATTTTGTGGGTTGACTTAGGCATATGGAGTTCATTTCCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15610302 GCGTATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGGGGCAGCACATGATGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** ** * *
15610367 CTCGGGCATGTGCTGGTATCGCATTTTTCTTCACCGGGGCACCATCGTC-GAAGCATCGTCGGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAG-AGCATCGCCGGAG
* ** * * *
15610431 AACCTGACCGACGACATTGGGGTTCCGGTGAGCGGGGGGTCGGGGGGGTGTGCGCACATGATGTG
130 AACCTGACCGACGACATCGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
15610496 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCAC
195 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * * * *
15610561 ACCCCCTTAAAGAGAATTTGAGATTTTCCAGG-TTCCTGCCAGTAGCCATTAAAGTGTTTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * *
15610625 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACTCTTCGAGTTTATAGCTGAATTGTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* **
15610690 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTAGGGGCCAAAACTCCTTCTGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * *
15610755 ATTTTAAAAAATGTCGGACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 AATTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-AGTCGTCTT
*
15610820 GCCAT-----TTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15610880 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCAACCTACCACCCTATCAATCCACGGCTTGCG
584 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
15610945 CATCCCGTCTCTCTGGCCGGTGTAGTGCCCGCCCGGCCACCCATCCGCTCGTTTCGTCGATTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCATCCGCTCGTTTCGTCGGTTGGC
* * * * **
15611010 TTAGGGATACGGAGTTCATTC-CTAGTCTAAGATTAGACCAGACCGAGGGTTGTGGCAGCAGGAT
713 TTAGGCATACGGAGTTCATTCGC-AGTCTAAGATCAGACCGGACCGAAGGTTACGGCAGCAGGAT
* * * *
15611074 CGACAGCGCACAGAGGGGGACCCGATCGATCTCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
777 CGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTG
* *
15611139 AGCGCCTGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAA
842 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * *
15611199 GCATACGGAGTTCATTCCTAGTCTAAGATCGAACCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
15611264 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* * ** * *
15611329 ACCTGACCGGCGGTAC-T-GGAGTTCCGGTGATC-GGGGGGTCGGGGGGTGTGCGCACAAGATGT
131 ACCTGACCGAC-G-ACATCGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGT
* * * * * * * *
15611391 ACGATGGGTGCTAGTACTTGGCCCTTATATTGGGCCCTTATCCCTCGTCAAACCTCGAGAATTTA
194 GCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* *
15611456 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAATGTGTTTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15611521 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAATTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * * ** *
15611586 GCGCATGCCAACAAAAATAGAAGGATCATGTCTACCAAGATTT-TTGCCAAAACTCCATCC-AAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG-TTTGGGGCCAAAACTCCTTCCAAAA
* * *
15611649 AAAATTTCCAAAAATCTCGAACCGTAAAAAGTTTCAACAATCATGAAAAATAGAAAACAAGTCGT
453 AAAATTT-AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAAC-AGTCGT
* *
15611714 CTTGGCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAG-CATAAAATTG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
** * **
15611778 GCATTGGCACACAAAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCGTGGCTT
581 GCATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* *** * * *
15611843 GTGCATCCCGTCTCTCTGGTTAGCGTAGGGACCGCCCGTCCGCCCATCCGTTCGTTTCGTCGGTT
646 GCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCATCCGCTCGTTTCGTCGGTT
** * **
15611908 GGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCAGATTGGACTGAAGGTTGTGGCAGCAGG
710 GGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAAGGTTACGGCAGCAGG
* * ** * * *
15611973 ATCGGCAGCACGGAGAGTGGGACCCGATCGATCCCCAACTTGTGCATCCCGCCCCTTTGGCCGGC
775 ATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGAC
* * * *
15612038 TGAGTGCCCGCACGCTCGTTTTGTGGGTTAACTTAGGCAGACGGAGTTCATTCCCAGTCTAA
840 TGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * *
15612100 GCATACGGAGTTCACTCCCAGTCTAAGATCGGACTAGACCGAGGGTTGCGGCTGCACATACTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15612165 CTCGAGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* * *
15612230 ACCTGACTGGA-GGCATCGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGTGCACATGATGTG
131 ACCTGAC-CGACGACATCGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTG
*
15612294 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCAC
195 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15612359 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGCCCGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* ** *
15612424 GGGGACACTTTTTTCAAATGGTCCCAAAATCTTGTACACTTTAAATTTTTAGCTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * *** *
15612489 TGCATGCCAACAAAAATAGAAGGATCATGTCTACCCCTTTTGGGGCCAGAACTCCTTCCAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* ** **
15612554 AATTTAAAAAATCCCGAACCGCAAAAAGTTTTGAAAATTGTGAAAAATAGAAAACATGTCGTCTT
455 AATTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACA-GTCGTCTT
* * *
15612619 GCCACGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTGCAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* *
15612684 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCTTGCG
584 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * * *
15612749 CATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCTCGCCCGTCCGTTCATTTCGTCAGTTGGC
649 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGC-CGCCCATCCGCTCGTTTCGTCGGTTGGC
* * *
15612814 TTAGGCATACGGAGTTCATTCTG-AGTCTAAGAAT-GGATCGGACCGAAGGTTACGGTAGCAGGA
713 TTAGGCATACGGAGTTCATTC-GCAGTCTAAG-ATCAGACCGGACCGAAGGTTACGGCAGCAGGA
* * * * * * *
15612877 TCAGCAGCACGCAAAGGGGGACCCGACCGATCCTCGACTTGTGCATCCCGCCCCTCTGGCCAACT
776 TCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACT
* * * *
15612942 GAGCACCTGCACGCTCGTTCCGTGGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAA
841 GAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* ** * * ** **
15613003 GCATACAGAGTTCATTCCCAGTCTAAGATCGGAATGGATCGAGGGTTACAACAGCACATGCTACG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*
15613068 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* * * *
15613133 ACTTGACCCACGACA-CTGGGGTTCCGACGATCTGGGGGGCTGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGACATC-GGGGTTCCGACGATCGGGGGGGC-CGGGGGGTGTGCGCACATGATGT
* * ***
15613197 GTGTTGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATATATCATCAAACCTCGAGAACTCA
194 GCGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15613262 CACCCCCTTAAATAGCATTTGAGATTTTACAGGTGTACTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15613327 TGGGGACACTTTTATCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGTTGAATCTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
* * *
15613392 ATGCATGCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCTAAAACTCCTTTTGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCC---T-----
** * * *
15613457 AATTTAAAAAAAATTTAAAAAAATCTCGAGCTGCTAAAAGTTTCAAAAATCATGAAAAATAGAAA
446 --TCCAAAAAAAATTT-AAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAA
* *
15613522 ATGAGTCGTCTTGCCATGAAACTCCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
508 A-CAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCC
* * * * * * * *
15613587 ATAAAAATAGCATTTGCATGCA-AAGAGATGAAGATGTGCCTAAACCCACTTGCTACCCTATCGA
572 ATAAAAATGGCATTGGCACGTAGAA-ATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGA
* * * *
15613651 TCCACAGCTTGCGCATCCCGTCTCTCTGGTCGGCGTAGCGCCCGCCCGCCCGCCCACCCGCTCGT
636 TCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCATCCGCTCGT
* ** ** *
15613716 TTCGTCGGTTGGCTTACGCATACGGAGTTCATTCGCAGTCTAAGATTGGACCGGATTGAGGGTTA
700 TTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAAGGTTA
* * * * * * *
15613781 CGGTAGCATGAAT-GGCAGCACGTAGTGGGGGACCCGGTCGATCCTCGGCTTGCGCATCCCACCC
765 CGGCAGCA-GGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCC
* * * * * *
15613845 CTCTGGGCGACTGAGCGCCTG-ACTGCTCATTTCATGGGTTGACTTACGTATACGGAGTTCATTC
829 CTCTGGCCGACTGAGCGCCCGCAC-GCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC
*
15613909 CTAGTCTAA
893 CCAGTCTAA
* * *
15613918 GCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * *
15613983 CTTGGGTATGTGCTGGAGCCAAATTTTTCTTCGTTGGGGCACCATCGCTAGAGCATCACCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* * ** * * *
15614048 ACCTGACCGGCGGCATTAGAGTTCCGGCGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTAC
131 ACCTGACCGACGACATCGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
15614113 GATGGGTGCT-GCTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAGCCTCGAGAACTCAC
196 GATGGGTGCTGGC-ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
*
15614177 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15614242 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATCTATTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* * * * * * *
15614307 CGCATGGCAACAAAAATATATGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * **
15614372 ATTTTAAAAAATCTCGAACCGTAAAAA-TTTTGAAAATCATGAAAAATAG-AAA-A-----C--G
455 AATTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAGTCGTCTTG
*
15614427 --A-G-----TCA--T-----CTT----G-CCATTGGATGAATTTACAAGCCATAAAAATGGCAT
520 CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
*
15614472 TGGCACATAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
585 TGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
* * * * * * * * *
15614537 ATCCCGTTTCTTTGGTCGACGTAGTG-CC-CAC-CCG----TCCACTCATTTTGTTGGTTGGCTT
650 ATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCATCCGCTCGTTTCGTCGGTTGGCTT
* * * * * *
15614595 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGAACCAAACGTAACGGCAGCAAGATCGG
715 AGGCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAAGGTTACGGCAGCAGGATCGG
* * * *
15614660 CAGCACGTAAAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCTGGCTGAGC
780 CAGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGC
* *
15614725 GCCCGTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
845 GCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * *
15614782 GCATATGGAGTTCATTCCCAGTCTAAAATCGGACCGGACTGAGGGTTTCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * ** * * *
15614847 CTCAGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
* * * * *
15614912 ACCTGACCAACGACATTGGGGTTCGGACGATCGGGAGGGCCGGGGGGGTGTGCGTACATGATGTG
131 ACCTGACCGACGACATCGGGGTTCCGACGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTG
* * * * * * *
15614977 TGGTGGGTGCTGGTACTTGACCCTTATATTGGGCTCCTATCCCTGATCAAACCTCGAGAACTCAC
195 CGATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* * *
15615042 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACCGTTACAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15615107 GGGGACACATTTTTCAAATGGTCACAAAATCTTGTACACTTCGATTTTTTAGTTGAATTTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG
* *
15615172 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGGTTGGGGCCAAAACTCCTTCGAAAAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAA
* * * ** *
15615237 AGTTTGAAAAAT-TCTGAACCGTAAAAAGTTTCAAAAATTGTGAAAAATAGAAAATGAGTCGTCT
455 AATTTAAAAAATCTC-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAA-CAGTCGTCT
* * * *
15615301 TGCCATGAAACTTCATGTGAAGGATTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGT
518 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
15615366 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
583 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
*
15615431 GCATCCC-TCCCCTCTGGCCGGC
648 GCATCCCGT-CTCTCTGGCCGGC
15615453 TGAGCGCCCG
Statistics
Matches: 4448, Mismatches: 580, Indels: 221
0.85 0.11 0.04
Matches are distributed among these distances:
863 2 0.00
864 317 0.07
865 277 0.06
866 162 0.04
867 6 0.00
868 4 0.00
869 1 0.00
870 44 0.01
871 371 0.08
872 198 0.04
873 3 0.00
874 1 0.00
875 1 0.00
876 1 0.00
877 3 0.00
878 1 0.00
879 1 0.00
882 1 0.00
883 1 0.00
884 5 0.00
885 1 0.00
886 1 0.00
887 1 0.00
889 1 0.00
890 1 0.00
891 2 0.00
892 1 0.00
893 1 0.00
894 1 0.00
895 2 0.00
896 232 0.05
897 440 0.10
898 6 0.00
899 4 0.00
900 3 0.00
901 430 0.10
902 417 0.09
903 458 0.10
904 259 0.06
907 1 0.00
911 1 0.00
913 2 0.00
914 266 0.06
915 512 0.12
916 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCCAGAGCATCGCCGGAGA
ACCTGACCGACGACATCGGGGTTCCGACGATCGGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGCACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
ATTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCATCCGCTCGTTTCGTCGGTTGGCTTA
GGCATACGGAGTTCATTCGCAGTCTAAGATCAGACCGGACCGAAGGTTACGGCAGCAGGATCGGC
AGCACGCAGAGGGGGACCCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCG
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
Found at i:15613006 original size:26 final size:26
Alignment explanation
Indices: 15612977--15613029 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15612967 GTTGACTTAG
* *
15612977 GCATACGGAGTTCATTTCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15613003 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15613029 G
1 G
15613030 ATCGGAATGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15613480 original size:10 final size:11
Alignment explanation
Indices: 15613453--15613479 Score: 54
Period size: 11 Copynumber: 2.5 Consensus size: 11
15613443 ACTCCTTTTG
15613453 AAAAAATTTAA
1 AAAAAATTTAA
15613464 AAAAAATTTAA
1 AAAAAATTTAA
15613475 AAAAA
1 AAAAA
15613480 TCTCGAGCTG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 16 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (11 bp):
AAAAAATTTAA
Found at i:15614785 original size:26 final size:26
Alignment explanation
Indices: 15614756--15614807 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15614746 GTTGACTTAG
15614756 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15614782 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15614808 AATCGGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15615518 original size:26 final size:26
Alignment explanation
Indices: 15615489--15615567 Score: 140
Period size: 26 Copynumber: 3.0 Consensus size: 26
15615479 GTTGGCTTAG
*
15615489 GCATACGGAGTTCATTCCCTGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15615515 GCATAAGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15615541 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15615567 G
1 G
15615568 ATCAGACCAG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.27, C:0.25, G:0.20, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15616217 original size:756 final size:759
Alignment explanation
Indices: 15614756--15616193 Score: 2202
Period size: 756 Copynumber: 1.9 Consensus size: 759
15614746 GTTGACTTAG
* * * *
15614756 GCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAAATCGGACCGGAC
1 GCATAAGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGAC
* *
15614821 TGAGGGTTTCGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCACATTTTTCTTCACCGGGG
66 TGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
* * * *
15614886 CACCATCGTCGGAGCATCGCCAGAGAACCTGACCAACGACATTGGGGTTCGGACGATCGGGAGGG
131 CACCATCGCCGGAGCATCGCCAGAGAACCTGAACAACGACATTGAGGTTCCGACGATCGGGAGGG
* * * * * *
15614951 CCGGGGGGGTGTGCGTACATGATGTGTGGTGGGTGCTGGTACTTGACCCTTATATTGGGCTCCTA
196 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCATATATTGGCCCCCTA
* * * *
15615016 TCCCTGATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
261 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAACATTTGACATTTTACAGGTTTGCTG
* * *
15615081 CCAGTAACCGTTACAGTGTCTGAAATGGGGACACATTTTTCAAATGGTCACAAAATCTTGTACAC
326 CCAGTAACCATTAAAGTGTCTGAAATAGGGACACATTTTTCAAATGGTCACAAAATCTTGTACAC
* ** * * *
15615146 TTCGATTTTTTAGTTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGG
391 TTCCAGATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTAACAAGG
* * ** *
15615211 TTGGGGCCAAAACTCCTTCGAAAAAAAGTTTGAAAAATTCTGAACCGTAAAAAGTTTCAAAAATT
456 TTGGGGCCAAAACTCCTTCCAAAAAAAGTTTGAAAAATCCTGAACCACAAAAAGTTTCAAAAATC
* * * *
15615276 GTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCATGTGAAGGATTAAGGGACCATTTTA
521 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGATTAAGGGACCATTGTA
* * * *
15615341 TGAATTTACAAGCCATAAAAATGGTATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCT
586 TGAATTTACAAGCCATAAAAATGGCATCGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCT
15615406 ACCACCCTATCGATCCACGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCG
651 ACCACCCTATCGATCCACGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCG
15615471 TTTCGTGCGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAA
716 TTTCGTGCGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAA
*
15615515 GCATAAGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGA-
1 GCATAAGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGAC
** **
15615579 TCGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGG
66 T-GAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGG
* * * * * *
15615644 GCACCATTGCCGGGGCATCGCCGGAGAACCTGAACGACGGCATTGAGGTTCCGACGATTGGG-GG
130 GCACCATCGCCGGAGCATCGCCAGAGAACCTGAACAACGACATTGAGGTTCCGACGATCGGGAGG
* * *
15615708 GTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATGTTGGCCCCCT
195 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCATATATTGGCCCCCT
15615772 ATCCCTCATCAAACCTCAAGAA-TCACACCCCCTTAAAGAACATTTGACATTTTACAGGTTTGCT
260 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAACATTTGACATTTTACAGGTTTGCT
* * * * *
15615836 GCCAGTAGCCATTAAAGTGTCT-ATAATAGGGACACTTTTTTTACATGGTCACAAAATGTTGTAC
325 GCCAGTAACCATTAAAGTGTCTGA-AATAGGGACACATTTTTCAAATGGTCACAAAATCTTGTAC
*
15615900 ACTTCCAGATTTTAGCTGAATTTTTTTGTGCCTGCCAACAAAAATAAAAGGATCACGTCTAACAA
389 ACTTCCAGATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTAACAA
* * *
15615965 GTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTTAAAAATCCTGAACCACAAAAAGTTTCAAAAA
454 GGTTGGGGCCAAAACTCCTTCCAAAAAAAGTTTGAAAAATCCTGAACCACAAAAAGTTTCAAAAA
*
15616030 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTG
519 TCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGATTAAGGGACCATTG
* * *
15616095 TATGATTTTACAAGCCATAAAAATGGCATCGGCATGCAAAAATATGAAGATGTGCCTAAACTCAC
584 TATGAATTTACAAGCCATAAAAATGGCATCGGCACGCAAAAATATGAAGATGTGCCTAAACCCAC
15616160 CTACCACCCTATCGATCCACGGCTTGCGCATCCC
649 CTACCACCCTATCGATCCACGGCTTGCGCATCCC
15616194 GTCTTTTTGT
Statistics
Matches: 608, Mismatches: 69, Indels: 7
0.89 0.10 0.01
Matches are distributed among these distances:
755 1 0.00
756 361 0.59
757 73 0.12
758 5 0.01
759 168 0.28
ACGTcount: A:0.28, C:0.23, G:0.23, T:0.26
Consensus pattern (759 bp):
GCATAAGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAAATCAGACCAGAC
TGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCACCGGGG
CACCATCGCCGGAGCATCGCCAGAGAACCTGAACAACGACATTGAGGTTCCGACGATCGGGAGGG
CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGACCCATATATTGGCCCCCTA
TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAACATTTGACATTTTACAGGTTTGCTG
CCAGTAACCATTAAAGTGTCTGAAATAGGGACACATTTTTCAAATGGTCACAAAATCTTGTACAC
TTCCAGATTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATAAAAGGATCACGTCTAACAAGG
TTGGGGCCAAAACTCCTTCCAAAAAAAGTTTGAAAAATCCTGAACCACAAAAAGTTTCAAAAATC
GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGATTAAGGGACCATTGTA
TGAATTTACAAGCCATAAAAATGGCATCGGCACGCAAAAATATGAAGATGTGCCTAAACCCACCT
ACCACCCTATCGATCCACGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCG
TTTCGTGCGTTGGCTTAGGCATACGGAGTTCATTCCCTGTCTAA
Found at i:15616446 original size:26 final size:26
Alignment explanation
Indices: 15616416--15616468 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15616406 GTTGACCTAG
15616416 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
**
15616442 GCATAGGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15616468 G
1 G
15616469 ATCGGACCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15617355 original size:26 final size:26
Alignment explanation
Indices: 15617319--15617371 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15617309 GTTGACTTCG
* * *
15617319 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTAATTCCCAGTATAA
15617345 GCATACAGAGTTAATTCCCAGTATAA
1 GCATACAGAGTTAATTCCCAGTATAA
15617371 G
1 G
15617372 ATCGGACCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.23, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTAATTCCCAGTATAA
Found at i:15617777 original size:901 final size:901
Alignment explanation
Indices: 15615515--15620858 Score: 6899
Period size: 901 Copynumber: 5.9 Consensus size: 901
15615505 CCCTGTCTAA
* * *
15615515 GCATAAGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGAT
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
15615580 CGAGGGTTACGGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGTATTTTTCTTCGTCGGGG
66 CGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * *
15615645 CACCATTGCCGGGGCATCGCCGGAGAACCTGAAC-GACGGCATTGAGGTTCCGACGATTGGGGGG
131 CACCATCGTCGGAGCATCGCCGGAGAACCTG-ACTGACGGCATTGGGGTTCCGACGATCGGGGGG
* *
15615709 -TCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCATATGTTGGCCCCCTA
195 CT-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
15615773 TCCCTCATCAAACCTCAAGAA-TCACACCCCCTTAAAGAACATTTGACATTTTACAGGTTTGCTG
259 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * * *
15615837 CCAGTAGCCATTAAAGTGTCT-ATAATAGGGACACTTTTTTTACATGGTCACAAAATGTTGTACA
324 CCAGTAGCCATTAAAGTGTCTGA-AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * * *
15615901 CTTCCAGATTTTAGCTGAATTTTTTTGTGCCTGCCAACAAAAATAAAAGGATCACGTCTAACAAG
388 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * * * *
15615966 TTTGGGGCCAAAACTCCTTCCAAAAAAATTTTTAAAAATCCTGAACCACAAAAAGTTTCAAAAAT
453 TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
*
15616031 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGT
518 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* * ** * *
15616096 ATGATTTTACAAGCCATAAAAATGGCATCGGCATGCAAAAATATGAAGATGTGCCTAAACTCACC
583 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * ** * *
15616161 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTTTTTGTTCGGCGTAGCGCCCACC-CAAC
648 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGC--C
**
15616225 CGCCCG-CCTGCTTATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG
711 CGCCCGTCC-GCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAG
* * * * * * *
15616289 ACCAAATCGAGGGTTGCGGCAACAAGATTGACAGCACGTAGAGGGGGACCCAGCCGATCCCCGGC
775 ACCAGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGCAGAGGGGGACCCTGCCGATCCCCGGC
* * * * * * * *
15616354 TTACGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCACACACTCGTTTCATGGGTTGACCTAG
840 TTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* *
15616416 GCATACAGAGTTCATTCCCAGTCTAAGCATAGGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * *
15616481 AGAGGGTTGCAGCAGCACATACTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG-CTGGG
66 CGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTC-GGG
* * * * * *
15616545 GCACGATCGCCGGAGCCTCGCAGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGT
130 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGG-
* *
15616610 TTCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
194 -GCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
** * * *
15616675 ATCCCTCATCAAAATTTGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGTTTTGCT
258 ATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
15616740 GTCAGTAGCCATTAAAGTGTCTGAAATGGGGATACTTTTTTCAAATGGTCACAAAATCTTGTACA
323 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* * * *
15616805 CTTCAAGTTTTTAGCTGAATTTTTTTGTGCATGCCAGCAAAAATACAAGGATCATGTCTACCAAC
388 CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAG
* * *
15616870 TTTGGGGACAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTTAAAAAT
453 TTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAAT
* *
15616935 CGTGAAAAATAAAAAACGAGTCGTCTTGCCATGAAACTTCAGGTGAAGGCTTAAGGGACCATTGT
518 CGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGT
* *
15617000 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATATCCCTAAACCCACC
583 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
* * * * *
15617065 TACCACCCTAACGATCGACGGCTTGCGCATCTCGTCTCTCTAGCCGGTGTAGTGCCCGTCCGCCC
648 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG-CCGCCC
* * * * * *
15617130 GCCCGTCCGCTCGTTTCGTCAGTTTGCTTAGGCATATGGAGTT-ATTCCCAGTCTAAGATCAGAT
712 GCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
* * * *
15617194 CAGACCAAGGGTTGTGGTAGCAGGATTGGCAGCACGCAGAGGGGGACCCTGCCGATCCCTGGCTT
777 CAGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGCAGAGGGGGACCCTGCCGATCCCCGGCTT
* * *
15617259 GCGCATCCCACCTCTCTGGCCGACTGAACGCCCGCACGCTCGTTTCGTGGGTTGACTTCG
842 GCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* * * *
15617319 GCATACGGAGTTCATTCCCAGTCTAAGCATACAGAGTTAATTCCCAGTATAAGATCGGACCGGAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * *
15617384 CGAGGGTTGCAACAGCACATGCTAGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGAGG
66 CGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
*
15617449 CACCATCGTCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCAACGATCGGGGGGC
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGC
* *
15617514 TGGGGGGTGTGCGAACATGACGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
196 TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* * *
15617579 CCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTTCC
261 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
*
15617644 AGTATCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
326 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
*
15617709 TGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
391 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * ** *
15617774 GGGGTCAAAAATCCTTCTGAAAAAATTTTAAAAAATCTTGAACCGCAAAAAGTTTCAAAAATCAT
456 GGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
* * *
15617839 GGAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGGCCATTGGATG
521 GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
* * *
15617904 AATTTAAAAGCCATAAAAATGGCATTGACACACAGAAATATGAAGATGTGCCTAAACCCACCAAC
586 AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
*
15617969 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTG--C-CCGCCCGCCC
651 CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCC
* * * * *
15618031 GTTCGTTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATT-CTCAGTCTAAGATCAGATCAG
716 GTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCT-AGTCTAAGATCAGACCAG
* ** * * * *
15618095 ACTGAGGGTTGCAGCAACAGGA-TCAGCAGCACCCAAAGGGGGA-CCTGGCCGATCCCCGGCTTG
780 ACCGAGGGTTGTGGCAGCAGGATTGA-CAGCACGCAGAGGGGGACCCT-GCCGATCCCCGGCTTG
* * * * * *
15618158 CGCATCCCGCCCCTCTGGCCTG-CTGAGTGCCTGCACGCTCGTTTCATGGCTTGACTTTG
843 CGCATCCCACCCCTCTGGCC-GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
* ** **
15618217 GCATACGGAGTTCATTCCCTGTCTAAGCATACGGAGTTCATTCTTAGTCTAAGATCAGG-CTGGA
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATC-GGACCAGA
* * *
15618281 CCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGTCGCATTTTTCTTCATTGGG
65 CCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGG
* ** * **
15618346 GCACCATCGTCGAAGCATCGCCAAAGAACCTGACTGACGGCATTGGGGTTCTGGTGATCGGGGGG
130 GCACCATCGTCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGATC-GGGGG
* *
15618411 GCTGGGGGGTGTGCGCACATGATGTGCAAAGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
194 GCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* *
15618476 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTATAGGTTTGCTG
259 TCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
* * *
15618541 CCAGTAGCCATTAAAATGTCTGAAATGGGGATACTTTTTTCAAATGGTGACAAAATCTTGTACAC
324 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * * *
15618606 TTCGAGTTTTTAGCTGAATTTTTTTTTGCATGCCAACAAAAATAAAAGGATCATGACTACCAAGC
389 TTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGT
* * * * * **
15618671 TTGGGGCCACAACTCCTTCTGAAAAAATTTTAAAAAATCTCAAACCGCAAAAAGTTTTGAAAATC
454 TTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATC
*
15618736 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTGT-AGGTGAAGGCTTAAGGGACCATTGT
519 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT-TCACGTGAAGGCTTAAGGGACCATTGT
* *
15618800 ATGAATTTACAGGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTCCCTAAACCCACC
583 ATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACC
** * * *
15618865 TACCACCCTATCGATCCATAGCTTGCGCATCTCGTCTCTCTAGCCGACGTAGTGCCCG--GCCCG
648 TACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCG
* * * * *
15618928 TCCGTCCG-TC--TTCATCGGTTTAGCTTAGGCATAC-GAGATAATTCCTAGTCTAAGATCGGAC
713 CCCGTCCGCTCGTTTCATCGG-TTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGAC
** * * * * * ** * **
15618989 TGGATCGACGGTT-TCGGTAGCA-GATCGACGAGTACGCAGA--AAGAACCTGACCGTATCCTTG
777 CAGACCGAGGGTTGT-GGCAGCAGGATTGAC-AGCACGCAGAGGGGGACCCTG-CCG-ATCCCCG
* * * * *
15619050 GCTTGCGCATCCCAGCCCTCTGGCCGACAGTGCGCCC-CACGCTCGTTT-GTTGTTGACTGAGCA
838 GCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCG-TG--G-GT-TG-A
15619113 CGGAGTCTAG
897 C----T-TAG
15619123 TTAAGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGCATATGAA
1 ----GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAG--T---C---T-AA
* * *
15619188 GTTCATTCTCAGTCTAAGATCAGACCAGACCGAGGATTGCGGCAGCACATGCTGGGCTCGGGCAT
53 G---------A-TC---G----GACCAGACCGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCAT
* ** * * *
15619253 GTGCTGGTGCCGTATTTTTCTTCACCGGGGCACCATCGTCGAAGCATCGTCGGAGAACCTGACCG
101 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACTG
*
15619318 ATGGCATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
166 ACGGCATTGGGGTTCCGACGATCGGGGGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT
*
15619383 GGTACTTGGCCCTTATGTTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
231 GGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAA
15619448 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
296 GAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTT
* * * *
15619513 TTTCGAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGATTTTTTTTATGCATGCCAA-
361 TTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAC
* * *
15619577 TAAAATACAAGGATCACGTCTACCAAGTTTTGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAA
426 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
* *
15619642 TCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
491 TCCCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * * *
15619707 TTACGTGAAGGATTAAGGGACCATTGTAGGAATTTACAAGCCATTAAAATGGCATTGGC-CTGCA
556 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAC-ACA
* * * *
15619771 GAAATATGAAGATATGGCTAAACCCACCTACCACCCTATCGATGCACGGCTTGCACATCCCGTCT
620 GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCT
* * *
15619836 CTCTGGCCGACGTAGTGCCCGCCTGCCCGCCCGTTCGCTCGTTTCATCTGTTGGCTTAGGCATAC
685 CTCTGGCCGGCGTAGTGCCCGCC-GCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATAC
* * * * * *
15619901 GGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGCTGTGGGAGTAGGCTTGATAGCACGT
749 GGAGTTCATTCCTAGTCTAAGATCAGACCAGACCGAGGGTTGTGGCAGCAGGATTGACAGCACGC
* * * * *
15619966 AGAGTGGGACCC-GATCGATCCCCGACTTGCGCATCCCACCCCTCTGGCTGACTGAGCACCCGCA
814 AGAGGGGGACCCTG-CCGATCCCCGGCTTGCGCATCCCACCCCTCTGGCCGACTGAGCGCCCGCA
*
15620030 CGCTTGTTTCGTGGGTTGACTTAG
878 CGCTCGTTTCGTGGGTTGACTTAG
* * * * *
15620054 GCATACGGAGTTCATGCCCAGTTTAAGCATACGGAGTTCATTCCCAGTTTAAGATCGGCCCAAAC
1 GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * * * * * *
15620119 CGAGGGTTGCAGTAGAACATGCTGGGCTCAGGCATGTGCTGGGGCTGCATTTTTCATCGCCAGGG
66 CGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
* * * * ** *
15620184 CACCATCATCAGAGCATCACCGGAGAACCTGA-TCGGCGGTGTTGGGGTTCCGGCGATCGGGGGG
131 CACCATCGTCGGAGCATCGCCGGAGAACCTGACT-GACGGCATTGGGGTTCCGACGATC---GGG
*
15620248 GTCGGCGGGGGGGTTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
192 G--GGCTGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
15620313 CCCTATCCCTCATCACACCTCGAGAACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTT
254 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
15620378 TGCTGCCAGTAGCCATTAAAGTCTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
319 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* * * *
15620443 TACACTTCAATTTTTTAGTTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTAC
384 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTAC
* * * ** * *
15620508 CAAGTTTGGGGCCAAAAATTCTTCTGAAAAAATTTTAAAACATCCCGAACCATAAAAACTTTTAA
449 CAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAA
* *
15620573 AAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCA
514 AAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCA
* * ***
15620638 TTGTATGAATTTACAACCCATAAAAATGGCATTGCCATGTAGAAATATGAAGATGTGCCTAAACC
579 TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACC
* * *
15620703 CACCAACCACCCTATCGATCCACGGCTTGCGCATCGCGTCTCTCTGGCCGGCATAGTGCCCGCTC
644 CACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-C
* *** ** * *
15620768 GCCTGCCTACCCATTCGTTTTATCGGTTGGCTTAGGCACACGGAGTTCATTACC-AGTCTAAGAT
708 GCCCGCCCGTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATT-CCTAGTCTAAGAT
* *
15620832 -AGGACCAGATCGATGGTTGCT-GCAGCA
772 CA-GACCAGACCGAGGGTTG-TGGCAGCA
15620859 CATGCTGGGC
Statistics
Matches: 3879, Mismatches: 464, Indels: 193
0.86 0.10 0.04
Matches are distributed among these distances:
895 3 0.00
896 23 0.01
897 131 0.03
898 296 0.08
899 479 0.12
900 16 0.00
901 745 0.19
903 372 0.10
904 416 0.11
905 7 0.00
906 12 0.00
907 212 0.05
908 321 0.08
909 5 0.00
910 44 0.01
912 1 0.00
915 1 0.00
918 4 0.00
919 4 0.00
925 1 0.00
927 45 0.01
928 1 0.00
929 2 0.00
931 5 0.00
932 1 0.00
933 2 0.00
934 247 0.06
935 225 0.06
936 114 0.03
937 12 0.00
938 3 0.00
939 15 0.00
940 88 0.02
941 21 0.01
942 5 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (901 bp):
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
CGAGGGTTGCAGCAGCACATGCTGGGCTCAGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG
CACCATCGTCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCCGACGATCGGGGGGC
TGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
GGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCGT
GAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATG
AATTTACAAGCCATAAAAATGGCATTGGCACACAGAAATATGAAGATGTGCCTAAACCCACCTAC
CACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCGCCCGCCC
GTCCGCTCGTTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCAGACCAGA
CCGAGGGTTGTGGCAGCAGGATTGACAGCACGCAGAGGGGGACCCTGCCGATCCCCGGCTTGCGC
ATCCCACCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAG
Found at i:15619160 original size:26 final size:26
Alignment explanation
Indices: 15619124--15619205 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
15619114 GGAGTCTAGT
15619124 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15619150 TAAGCATACGGAGTTCATTCCCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
* * *
15619176 TAAGCATATGAAGTTCATTCTCAGTC
1 TAAGCATACGGAGTTCATTCCCAGTC
15619202 TAAG
1 TAAG
15619206 ATCAGACCAG
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.29, C:0.23, G:0.18, T:0.29
Consensus pattern (26 bp):
TAAGCATACGGAGTTCATTCCCAGTC
Found at i:15620090 original size:26 final size:26
Alignment explanation
Indices: 15620054--15620106 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15620044 GTTGACTTAG
15620054 GCATACGGAGTTCATGCCCAGTTTAA
1 GCATACGGAGTTCATGCCCAGTTTAA
*
15620080 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATGCCCAGTTTAA
15620106 G
1 G
15620107 ATCGGCCCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATGCCCAGTTTAA
Found at i:15621455 original size:709 final size:704
Alignment explanation
Indices: 15620080--15622241 Score: 2864
Period size: 704 Copynumber: 3.0 Consensus size: 704
15620070 CCCAGTTTAA
* * * * *
15620080 GCATACGGAGTTCATTCCCAGTTTAAGATCGGCCCA-AACCGAGGGTTGCAGTAGAACATGCTGG
1 GCATACGAAGTTCATT-CCAGTCTAAGATCGGACCAGAA-CGAGGGTTGCAGCAGCACATGCTGG
* * * * *
15620144 GCTC-AGGCATGTGCTGGGGCTGCATTTTTCATCGCCAGGGCACCATCATCAGAGCATCACCGGA
64 GCTCGA-GCATGTGCTGGGGCCGTATTTTTCTTCGCCGGGGCACCATC-TCA-AGCATCATCGGA
* * ** *
15620208 GAACCTGATCGGCGGTGTTGGGGTTCCGGCGATCGGGGGGGTCGGCGGGGGGGTTGTGCGCACAT
126 GAACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGG-C-GCGGGGGGG-TGTGCGCACAT
*
15620273 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCACACCTCGAGA
187 GATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGA
* *
15620338 ACTCACACCCCCTTAAAGAGCATTTCAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTCTC
252 ACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTC
* *
15620403 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAATTTTTTAGTTGAATT
317 TGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATT
* * * *
15620468 TTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATTCTTCT
382 TTTTTGTGCATGCC-----AAATACAA-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCC
* * *
15620533 GAAAAAA-TTTTAAAACATCCCGAACCATAAAAACTTTTAAAAATCGTGAAAAATAGAAAATGAG
441 AAAAAAATTTTTAAAA-ATCCC-AACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAG
* * *
15620597 TCGTCTTGCCATGCAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAACCCATAAA
504 TCGTCTTGCCATGCAACTTCATGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
* * *
15620662 AATGGCATTGCCATGTAGAAATATGAAGATGTGCCTAAACCCACCAACCACCCTATCGATCCACG
569 AATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-
* * * * *
15620727 GCTTGCGCATCGCGTCTCTCTGGCCGGCATAGTGCCCGCTCGCCTGCCTACCCATTCGTTTTATC
633 GCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC-C-CC-GCC-ACCCACTCATTTCATC
15620792 GGTTGGCTTAG
694 GGTTGGCTTAG
* * * * * *
15620803 GCACACGGAGTTCATTACCAGTCTAAGATAGGACCAGATCGATGGTTGCTGCAGCACATGCTGGG
1 GCATACGAAGTTCATT-CCAGTCTAAGATCGGACCAGAACGAGGGTTGCAGCAGCACATGCTGGG
* * * *
15620868 CTCGAGCATGTTCTGGTGCCGTATTTTTCTTCACTGGGGCACCATCGTCGAAGCATCATCGGAGA
65 CTCGAGCATGTGCTGGGGCCGTATTTTTCTTCGCCGGGGCACCATC-TC-AAGCATCATCGGAGA
*
15620933 ACCTGACCGACGGCATTGGGGTTCCGACGATCGAGGGGGC-CGGGGGGGTGTGCGCTCATGATGT
128 ACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCGCGGGGGGGTGTGCGCACATGATGT
* * * ** *
15620997 GTGATGGGTGCTAGTACTT-GCTCTTATATTGGCCCCCTA-CCCAAATCAAAACTCGAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15621060 CACCCCTTTAAGGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15621125 TGGGGACACTTTTTTGAAATGGTCGCAAAATCTTGTACACTTCAAGTTTTTAGCTG-ATTTTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
* *
15621189 GTGCCTGCC-AA-A-AA-ATCACGTCTACCAAGTTTGGGGGCCAAAACTCCGTCCAAAAAAATTT
387 GTGCATGCCAAATACAAGATCACGTCTACCAAGTTT-GGGGCCAAAACTCCCTCCAAAAAAA-TT
* **
15621250 TTTAAAAATCCCAAACAGTAAAAAAGTTTGGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
450 TTTAAAAATCCCAACCA-T-AAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
*
15621315 CATGCAACTTCATGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACT
513 CATGCAACTTCATGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
* * * *
15621380 GGTATGCAAAAATATGATGATATGCCTAAACCCACCTACCACCCTATCGATCCACAGCTTGCGCA
578 GGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCAC-GCTTGCGCA
* * * *
15621445 TCCCGTCTCTCTGGCCGACGTAGTGCCTGCCCAC-CCACCCGCCTCATTTCGTCGGTTGGCTTAG
642 TCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-CGCCACCC-ACTCATTTCATCGGTTGGCTTAG
* *
15621509 GCATACGAAGTTCATTTCCAGTCTCAGATCGGA-CTGAACAGAGGGTTGCAGCAGCACATGCTGG
1 GCATACGAAGTTCA-TTCCAGTCTAAGATCGGACCAGAAC-GAGGGTTGCAGCAGCACATGCTGG
*
15621573 GCTCGAGCATGTGCTGGGGCCGCT-TTTTTCTTTGCCGGGGCACCA--TC--G-----TCGGAGA
64 GCTCGAGCATGTGCTGGGGCCG-TATTTTTCTTCGCCGGGGCACCATCTCAAGCATCATCGGAGA
* *
15621628 ACCTGACCGACGGCATTGGGG-TCCAACGATC-GGGGGCATCGGGGGGGTGTGCGCACATGATGT
128 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGC-GCGGGGGGGTGTGCGCACATGATGT
* * *
15621691 GCGATAGGTGCTGGTACTTGGCCCTTATATTGGCCCCCCATCCCTCATCAAACCTCAAGAACTCA
192 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
*
15621756 CACCCCCTCAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
257 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
** *
15621821 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTGTTTT
322 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTT
15621886 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAA
387 GTGCATG-C--C--AAATACAA-GATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAA
* *
15621951 AATTTTAAAAAATCCTGAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
446 AATTTTTAAAAATCC-CAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
* *
15622016 TGCCATGAAACTTCATGGGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
510 TGCCATGCAACTTCATGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* *
15622081 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGT
575 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG-CTTGC
* *
15622146 GCATCCCATCTCTCTGGCCGGCGTAGTGCCCG-CCCGCCCACCCGCTCATTTCATCGGTTGGCTT
639 GCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCCG-CCACCCACTCATTTCATCGGTTGGCTT
*
15622210 AC
703 AG
15622212 GCATACGAAGTTCATTCCTAGTCTAAGATC
1 GCATACGAAGTTCATTCC-AGTCTAAGATC
15622242 AGATTGGACT
Statistics
Matches: 1275, Mismatches: 130, Indels: 88
0.85 0.09 0.06
Matches are distributed among these distances:
692 6 0.00
694 48 0.04
695 46 0.04
696 133 0.10
697 13 0.01
698 1 0.00
700 2 0.00
702 5 0.00
703 51 0.04
704 195 0.15
705 23 0.02
706 152 0.12
707 46 0.04
708 10 0.01
709 194 0.15
710 2 0.00
716 16 0.01
717 132 0.10
718 19 0.01
719 32 0.03
720 8 0.01
722 2 0.00
723 136 0.11
724 3 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (704 bp):
GCATACGAAGTTCATTCCAGTCTAAGATCGGACCAGAACGAGGGTTGCAGCAGCACATGCTGGGC
TCGAGCATGTGCTGGGGCCGTATTTTTCTTCGCCGGGGCACCATCTCAAGCATCATCGGAGAACC
TGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCGCGGGGGGGTGTGCGCACATGATGTGCGA
TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTAGCTGAATTTTTTTGTGC
ATGCCAAATACAAGATCACGTCTACCAAGTTTGGGGCCAAAACTCCCTCCAAAAAAATTTTTAAA
AATCCCAACCATAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGCAAC
TTCATGAGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGCTTGCGCATCCCGTCTC
TCTGGCCGGCGTAGTGCCCGCCCCGCCACCCACTCATTTCATCGGTTGGCTTAG
Found at i:15623786 original size:714 final size:712
Alignment explanation
Indices: 15622404--15623871 Score: 2321
Period size: 714 Copynumber: 2.1 Consensus size: 712
15622394 TAAGCATACA
* * ** * *
15622404 GAGTTCATTCCCAGTCTAAGATCGGACTAGACCGAGGGTTATGGCACCACATGCTTGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACACCACATGCTGGGCTCGGGC
* *
15622469 ATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGAC
66 ATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCACCGGAGAACCTGAC
*** * *
15622534 TGGTAGCATTGGTGTTCCGGCGATCGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGT
131 CAATAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGT
* *
15622599 GCTTGTACTTGGCCCTTGTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
196 GCTTGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
15622664 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACAC
261 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACAC
* *
15622729 TTTTTTCCAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGTTTTTTTTTGCATGCCA
326 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGTTTTTTTGTGCATGCCA
15622794 AAAAAAATACAAGGATCACATATACCAAGTTTGGGGCCAAAAAACCTTCCAAAAAAATTTAAAAA
391 AAAAAAATACAAGGATCACATATACCAAGTTTGGGGCCAAAAAACCTTCCAAAAAAATTTAAAAA
*
15622859 AATCCTGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
456 AATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * *
15622924 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTCATTGGCACGC
521 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAAAGC
* *
15622989 AGAAATATGAAGATGTGCCTAAACCCACTTACCACCCTATCGATCCATCGCTTGCGCATCCCACT
586 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCATCGCTTGCGCATCCCACT
* * *
15623054 TTCTGGCCGACGTAGTGCCCGCCCACCCGCCCGCTTGTTTCGTCGGTTGGCTTAGGCAAACG
651 CTATGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAAACG
* * * *
15623116 GAGTTCATTCCCAGTCCAAGATCAGACCGGACCAAGGGTTGCGACAGCACATGCTGGGCTCGGGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACACCACATGCTGGGCTCGGGC
* ** **
15623181 ATGTGCTGGTGTCGTATTTTTCTTCGTCGGGGCACCATCGCCGAAGCATCGTCGGAGAACCTGAC
66 ATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCACCGGAGAACCTGAC
* * *
15623246 CAATGGCATTGGGGTTTCGACGATCGAGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
131 CAATAGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGG
*
15623311 TGCTTGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCGT
195 TGCTTGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
15623376 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
260 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACA
15623441 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAG-TTTTTTGTGCATG
325 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG--GTTTTTTTGTGCATG
* * * * ** * * *
15623505 CCAATAAAAATTCAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAAATTTTA
388 CCAAAAAAAATACAAGGATCACATATACCAAGTTTGGGGCCAAAAAACCTTCCAAAAAAATTTAA
* *
15623570 AAAAAT-CTCGAACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTTGTCTTGCCAT
453 AAAAATCCT-GAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCAT
15623634 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGA
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGA
* *
15623699 AAGCAGAAATATGAAGATGTGCCTAAGCCCACCTACCACCCTATCCTTCCA-CGGCTTGCGCATC
582 AAGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCATC-GCTTGCGCATC
** * * * * *
15623763 CGTCTCTATGTCCGACTTAGTGCCCGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATA
646 CCACTCTATGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAAA
15623828 CG
711 CG
*
15623830 GAGTTCATTCCCAGTCTAAGATCACACCAGACCGAGGGTTGC
1 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGC
15623872 AGCAGCAGGA
Statistics
Matches: 687, Mismatches: 64, Indels: 8
0.91 0.08 0.01
Matches are distributed among these distances:
712 132 0.19
713 213 0.31
714 341 0.50
715 1 0.00
ACGTcount: A:0.27, C:0.24, G:0.23, T:0.26
Consensus pattern (712 bp):
GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACACCACATGCTGGGCTCGGGC
ATGTGCTGGTGTCGCATTTTTCTTCACCGGGGCACCATCGCCGAAGCATCACCGGAGAACCTGAC
CAATAGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGGTATGCGCACATGATGTGCGATGGGT
GCTTGTACTAGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACAC
TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGGTTTTTTTGTGCATGCCA
AAAAAAATACAAGGATCACATATACCAAGTTTGGGGCCAAAAAACCTTCCAAAAAAATTTAAAAA
AATCCTGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAAAGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCCATCCATCGCTTGCGCATCCCACT
CTATGGCCGACGTAGTGCCCGCCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAAACG
Found at i:15625784 original size:26 final size:26
Alignment explanation
Indices: 15625754--15625806 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15625744 CTTGACTTAG
*
15625754 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15625780 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15625806 G
1 G
15625807 ATCAGACCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15626932 original size:26 final size:26
Alignment explanation
Indices: 15626889--15626941 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15626879 TACTTGGCCC
* * *
15626889 GCATACGGAGTTCATTCCCAGTTTAA
1 GCATACAGAGATCATTCCCAGTCTAA
*
15626915 GCATACAGAGATCGTTCCCAGTCTAA
1 GCATACAGAGATCATTCCCAGTCTAA
15626941 G
1 G
15626942 ATCGAACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAGATCATTCCCAGTCTAA
Found at i:15627106 original size:26 final size:26
Alignment explanation
Indices: 15627069--15627126 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
15627059 CGTGGGTTGA
*
15627069 CTAAGGCATACGGAGTTCATTTCCAGT
1 CTAA-GCATACGGAGTTCATTCCCAGT
15627096 CTAAGCATACGGAGTTCATTCCCAGT
1 CTAAGCATACGGAGTTCATTCCCAGT
15627122 CTAAG
1 CTAAG
15627127 ATCAGACCAG
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
26 26 0.87
27 4 0.13
ACGTcount: A:0.28, C:0.24, G:0.21, T:0.28
Consensus pattern (26 bp):
CTAAGCATACGGAGTTCATTCCCAGT
Found at i:15627302 original size:429 final size:429
Alignment explanation
Indices: 15626500--15627313 Score: 1105
Period size: 429 Copynumber: 1.9 Consensus size: 429
15626490 ATGGAGTTCA
* * ** * * *
15626500 TTCCCAGTCTAAGAATGGACCAGACCGAGGGTTGTGCCAGTAGGATCGGTAGCACGCAGAGGGGG
1 TTCCCAGTCTAAGAATGAACCAGACCGAGGGTTGCGCCAACAGGATCAGCAACACGCAGAGGGGG
** * * * * * *
15626565 ACCCGGCTGATCCCCGGCTTGCGCATCTCGCCCCTCTGGCCGGCTGAGCACCCGCACGCTCGTTT
66 ACCCAACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCAGGCTGAACACCCGCACGCTCGTTT
* *
15626630 CGTGGGTTGACTTAGGCATGCAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCG
131 CGTGGGTTGACTAAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCG
* * *
15626695 AAGATCGAACCGGACCGAGGGTTACGGCAGTAAATGCTGGGTGCGGGCATGTGCTGGTGCCGCAT
196 AAGATCGAACCAGACCGAGGGTTACGGCAGCAAATGCTGGGTGCGAGCATGTGCTGGTGCCGCAT
* * * * **
15626760 TTTTCTTCATCGGGGCACCATCGTCGGAGCATTGTAAGAGAACTTTACCGGTGGCATTGGGGTTC
261 TTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCAAGAGAACCTGACCGACGGCATTGGGGTTC
15626825 CGACGATCGAGGGGTCGGGGCGAGAGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCG
326 CGACGATCGAGGGGTCGGGGCGAGAGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCG
15626890 CATACGGAGTTCATTCCCAGTTTAAGCATACAGAGATCG
391 CATACGGAGTTCATTCCCAGTTTAAGCATACAGAGATCG
* *
15626929 TTCCCAGTCTAAG-ATCGAACCAGACTGAGGGTTGCGGCAACAGGATCAGCAACACGCAGAGGGG
1 TTCCCAGTCTAAGAAT-GAACCAGACCGAGGGTTGCGCCAACAGGATCAGCAACACGCAGAGGGG
* * ** * *
15626993 GACCCAACCGATCCTCGGCTTACGCATCCCACCCCTCTGGTAGGCTGAATGCCTGCATGCTCGTT
65 GACCCAACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCAGGCTGAACACCCGCACGCTCGTT
* * *
15627058 TCGTGGGTTGACTAAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTCCCAGTC
130 TCGTGGGTTGACTAAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTC
* * * *
15627123 TAAGATC-AGACCAGACCGAGGGTTACGGTAGCATATGCTGGGCT-CGAGCATGTGCTGGTGCTG
195 GAAGATCGA-ACCAGACCGAGGGTTACGGCAGCAAATGCTGGG-TGCGAGCATGTGCTGGTGCCG
* **
15627186 CATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGG
258 CATTTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCAAGAGAACCTGACCGACGGCATTGGGG
* ** * * * *
15627251 TTCTGGTGATCGGAGGGG-CGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTG
323 TTCCGACGATC-GAGGGGTCGGGGCGAGAGTGCGCACATGATGTGCGATGGGTGCTGGTACTTG
15627314 AATGTTATAT
Statistics
Matches: 330, Mismatches: 51, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
428 3 0.01
429 320 0.97
430 7 0.02
ACGTcount: A:0.20, C:0.25, G:0.32, T:0.23
Consensus pattern (429 bp):
TTCCCAGTCTAAGAATGAACCAGACCGAGGGTTGCGCCAACAGGATCAGCAACACGCAGAGGGGG
ACCCAACCGATCCCCGGCTTACGCATCCCACCCCTCTGGCAGGCTGAACACCCGCACGCTCGTTT
CGTGGGTTGACTAAGGCATACAGAGTTCATTCCCAGTCTAAGCATACGAAGTTCATTCCCAGTCG
AAGATCGAACCAGACCGAGGGTTACGGCAGCAAATGCTGGGTGCGAGCATGTGCTGGTGCCGCAT
TTTTCTTCATCGGGGCACCATCGTCGGAGCATCGCAAGAGAACCTGACCGACGGCATTGGGGTTC
CGACGATCGAGGGGTCGGGGCGAGAGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCG
CATACGGAGTTCATTCCCAGTTTAAGCATACAGAGATCG
Found at i:15627975 original size:26 final size:26
Alignment explanation
Indices: 15627945--15627997 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15627935 GTTGACTTAG
15627945 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15627971 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15627997 G
1 G
15627998 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15628732 original size:870 final size:869
Alignment explanation
Indices: 15627052--15629525 Score: 4110
Period size: 870 Copynumber: 2.8 Consensus size: 869
15627042 TGCCTGCATG
* * * *
15627052 CTCGTTTCGTGGGTTGACTAAGGCATACGGAGTTCATTTCCAGTCTAAGCATACGGAGTTCATTC
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTC
* * * *
15627117 CCAGTCTAAGATCAGACCAGACCGAGGGTTACGGTAGCATATGCTGGGCTCGAGCATGTGCTGGT
66 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCTTGTGCTGGT
* * ** * * * * * *
15627182 GCTGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATT
131 GCCGCATATTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACTGGCGACATT
* * * * * *
15627247 GGGGTTCTGGTGATCGGAGGGGCGGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACT
196 GGGGTTCCGATGATCGG-GGGGCTGGGGGGCTGTGCGCACATGATATGTGATGGGTACTGGTACT
* *
15627312 T-GAATGTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCA
260 TGGCA-GTTATATTGGCCCCCTATCCCTCATCAAACCCCGAGAACTCACACCCCCTTAAAGAGCA
* * *
15627376 TTTGCGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTTAAATGGGGACACTTTTTTCA
324 TTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCA
* * *
15627441 AATGATCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAAATGTTTTGTGCATGCCAACAAAAA
389 AATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAA
* * *
15627506 TACAAGGAACACGTCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTGAAAAATCTCG
454 TACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAATCTCG
* * * * ** *
15627571 AACCGCAAAAAGTTTGAAAAATCATGAAAAATAGAAAACGAGTCGACTTGCCATGAAACAACATG
518 AACCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACG
* *
15627636 TGAAGGCTT-AGGGACCATTGTATGAATTTACAAGCCATAAAAATGACGGTTGGCATGCAGAAAT
583 TGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC-ATTGGCATGCAGAAAT
*
15627700 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATCCTGTCTCTCTG
647 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTCCATCCTGTCTCTCTG
*
15627765 GCCAACGTAGTGCCCGCCTGCTCGCCTGTCTGCTCATTTTGTTGGTTGGCTTAGGCATACGGAGT
712 GCCGACGTAGTGCCCGCCTGCTCGCCTGTCTGCTCATTTTGTTGGTTGGCTTAGGCATACGGAGT
15627830 TCATTCCCAGTCTAGGATTGGACCAGACCGATGGTTGCGGCAGCAGGATCGGCAGCACATAGAGG
777 TCATTCCCAGTCTAGGATTGGACCAGACCGATGGTTGCGGCAGCAGGATCGGCAGCACATAGAGG
*
15627895 GGGACCCGGTCGATCCCCGAGATGTACA
842 GGGACCCGATCGATCCCCGAGATGTACA
15627923 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTC
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTC
15627988 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCTTGTGCTGGT
66 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCTTGTGCTGGT
15628053 GCCGCATATTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACTGGCGACATT
131 GCCGCATATTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACTGGCGACATT
*
15628118 GGGGTTCCGATGATCGGGGGGCTGGGGGGCTGTGCGCACATCATATGTGATGGGTACTGGTACTT
196 GGGGTTCCGATGATCGGGGGGCTGGGGGGCTGTGCGCACATGATATGTGATGGGTACTGGTACTT
15628183 GGCAGTTATATTGGCCCCCTATCCCTCATCAAACCCCGAGAACTCACACCCCCTTAAAGAGCATT
261 GGCAGTTATATTGGCCCCCTATCCCTCATCAAACCCCGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
15628248 GGAGATTTTACAGGTTTGCTGCCAGTAGCCACTAATGTGTCTGAAATGAGGACACTTTTTTCAAA
326 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
15628313 TGGTCACAAAATCTTGTACACTTAGAGTTTTTAGCTGAATTTTTTTGGGCATGCCAACAAAAATA
391 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
15628378 CAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAGATCTCGAA
456 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA-ATCTCGAA
* * *
15628443 CCGAAAAAAGTTTCAAAAATCGTGAAAAATGGAAAACGAGTTGTCTTGCCATTAAACTTCACGTG
520 CCGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* *
15628508 AAGGCTTAAGGGACCATTGTAGGAATTTACAATCCATAAAAATGGCATTGGCATGCAGAAATATG
585 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
15628573 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTCCATCCTGTCTCTCTGGCC
650 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTCCATCCTGTCTCTCTGGCC
15628638 GACGTAGTGCCCGCCTGCTCGCCTGTCTGCTCATTTTGTTGGTTGGCTTAGGCATACGGAGTTCA
715 GACGTAGTGCCCGCCTGCTCGCCTGTCTGCTCATTTTGTTGGTTGGCTTAGGCATACGGAGTTCA
15628703 TTCCCAGTCTAGGATTGGACCAGACCGATGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGG
780 TTCCCAGTCTAGGATTGGACCAGACCGATGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGG
15628768 ACCCGATCGATCCCCGAGATGTACA
845 ACCCGATCGATCCCCGAGATGTACA
15628793 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTC
1 CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTC
15628858 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCTTGTGCTGGT
66 CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCTTGTGCTGGT
*
15628923 GCCGCATATTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGAAGAACCTGACTGGCGACATT
131 GCCGCATATTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACTGGCGACATT
*
15628988 GGGGTTCCGATGATCGGGGGGCTGGGGGGCTGTGCGCACATGATATGCGATGGGTACTGGTACTT
196 GGGGTTCCGATGATCGGGGGGCTGGGGGGCTGTGCGCACATGATATGTGATGGGTACTGGTACTT
*
15629053 GGCAGTTATATTGGCCCCCTATCCCTCATTAAACCCCGAGAACTCACACCCCCTTAAAGAGCATT
261 GGCAGTTATATTGGCCCCCTATCCCTCATCAAACCCCGAGAACTCACACCCCCTTAAAGAGCATT
15629118 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
326 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
*
15629183 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATA
391 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* *
15629248 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
456 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAATCTCGAA
* * *
15629313 CC-ACAAAAAGTTTCCAAAAAAATCGTGAAAGATAGAAAACGAGTCGTCTTGCCATGAAAATTTA
520 CCGA-AAAAAGTTT-C--AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCA
**
15629377 CGTGAAGGCTTAAGGGAAAATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
581 CGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAA
* * * * * *
15629442 TATGACGATATGCCTAAACCCACCTCCCACCCTATCGATCCATGGCTTG-CGTATCCCGTCTCTC
646 TATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTC-CATCCTGTCTCTC
*
15629506 TGGCCGACATAGTGCCCGCC
710 TGGCCGACGTAGTGCCCGCC
15629526 CACCACACTT
Statistics
Matches: 1501, Mismatches: 93, Indels: 16
0.93 0.06 0.01
Matches are distributed among these distances:
869 5 0.00
870 1084 0.72
871 234 0.16
872 1 0.00
873 177 0.12
ACGTcount: A:0.27, C:0.24, G:0.24, T:0.26
Consensus pattern (869 bp):
CTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCGTTC
CCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCTTGTGCTGGT
GCCGCATATTTCTTCACCGGGGCACCATCGCCAGAGCATCACCGGAGAACCTGACTGGCGACATT
GGGGTTCCGATGATCGGGGGGCTGGGGGGCTGTGCGCACATGATATGTGATGGGTACTGGTACTT
GGCAGTTATATTGGCCCCCTATCCCTCATCAAACCCCGAGAACTCACACCCCCTTAAAGAGCATT
TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
TGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAATCTCGAAC
CGAAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGA
AGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGA
AGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTCCATCCTGTCTCTCTGGCCG
ACGTAGTGCCCGCCTGCTCGCCTGTCTGCTCATTTTGTTGGTTGGCTTAGGCATACGGAGTTCAT
TCCCAGTCTAGGATTGGACCAGACCGATGGTTGCGGCAGCAGGATCGGCAGCACATAGAGGGGGA
CCCGATCGATCCCCGAGATGTACA
Found at i:15628845 original size:26 final size:26
Alignment explanation
Indices: 15628815--15628867 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15628805 GTTGACTTAG
15628815 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15628841 GCATACGGAGTTCGTTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15628867 G
1 G
15628868 ATCAGACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15629804 original size:326 final size:328
Alignment explanation
Indices: 15629200--15629851 Score: 959
Period size: 326 Copynumber: 2.0 Consensus size: 328
15629190 AAAATCTTGT
* *
15629200 ACACTTTGAGTTTTTAACTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
1 ACACTTCGAGTTTTTAACTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
** * *
15629265 AAGTTTGGGGCCAAAATTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAAAGTTTCCAA
66 AAGTTCAGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCACGAACCACAAAAAGTTT-C-A
* * * *
15629330 AAAAATCGTGAAAGATAGAAAACGAGTCGTCTTGCCATGAAAATTTACGTGAAGGCTTAAGGGAA
129 AAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAATTCACATGAAGGCTTAAGGGAA
* * *
15629395 AATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGACGATATGCCTAAA
194 AATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATATGCCTAAA
* * * * ** * *
15629460 CCCACCTCCCACCCTATCGATCCATGGCTTGCGTATCCCGTCTCTCTGGCCGACATAGTGCCCGC
259 CCCACCTACCACCCTATCGACCCACGGCTTACACATCCCGCCTCTCTGGCCGACATAGTCCCCGC
15629525 CCACC
324 CCACC
* *
15629530 ACACTTCGAGTTTTTACCTGAATATTTTTGTGCGTGCCAGA-AAAAATACAAGGATCACGTCTAC
1 ACACTTCGAGTTTTTAACTGAATATTTTTGTGCATGCCA-ACAAAAATACAAGGATCACGTCTAC
* * **
15629594 CAAGTTCAGGGCCAAAAATCCTTCTGAAAAAATTTTAAAAAATCATGAACCGTAAAAAGTTT-AA
65 CAAGTTCAGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCACGAACCACAAAAAGTTTCAA
* * *
15629658 AAAATCATGAAAAATA-TAAACGAGTCGTCTTGCCATGAAACTTCACATGAAGGCTTAAGGGACA
130 AAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAATTCACATGAAGGCTTAAGGGAAA
*
15629722 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATGTGCCTAAAC
195 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATATGCCTAAAC
* *
15629787 CCACCTACCACCCTATCGACCCACGGCTTACACATCCCGCCTCTCTGGCCGGCGTAGTCCCCGCC
260 CCACCTACCACCCTATCGACCCACGGCTTACACATCCCGCCTCTCTGGCCGACATAGTCCCCGCC
15629852 AGCCCGCCCT
Statistics
Matches: 288, Mismatches: 33, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
326 159 0.55
327 16 0.06
330 112 0.39
331 1 0.00
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.25
Consensus pattern (328 bp):
ACACTTCGAGTTTTTAACTGAATATTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACC
AAGTTCAGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCACGAACCACAAAAAGTTTCAAA
AAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAATTCACATGAAGGCTTAAGGGAAAA
TTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAAAAATATGAAGATATGCCTAAACC
CACCTACCACCCTATCGACCCACGGCTTACACATCCCGCCTCTCTGGCCGACATAGTCCCCGCCC
ACC
Found at i:15630083 original size:26 final size:26
Alignment explanation
Indices: 15630047--15630099 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15630037 GTTGACTTAG
*
15630047 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15630073 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15630099 G
1 G
15630100 ATCGGACCGC
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15630796 original size:17 final size:17
Alignment explanation
Indices: 15630774--15630806 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
15630764 CTGATTGGAT
15630774 GCATTGGGGTACCGACG
1 GCATTGGGGTACCGACG
*
15630791 GCATTGGGGTTCCGAC
1 GCATTGGGGTACCGAC
15630807 AATCGGGGGG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.15, C:0.24, G:0.39, T:0.21
Consensus pattern (17 bp):
GCATTGGGGTACCGACG
Found at i:15633150 original size:904 final size:887
Alignment explanation
Indices: 15630784--15633212 Score: 3426
Period size: 886 Copynumber: 2.7 Consensus size: 887
15630774 GCATTGGGGT
* * ** *
15630784 ACCGACGGCATTGGGGTTCCGACAATCGGGGGGGTCGGGGGGTGTGCACACATGATGTGTGATGG
1 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGTGCACATGATGTG-GGTGG
* * *
15630849 GTGCTGGTACCTGGCCCTTATATTGACCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCT
65 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCT
* * *
15630914 TTAAAGCGCATTTGGGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGAC
130 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
*
15630979 A-TTTTATTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTT-AGCTTAATTTTTTTGTGCA
195 ACTTTT-TTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTCAGCTGAATTTTTTTGTGCA
* * *
15631042 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCAGGGCAAAAACTCCTTCCGAAAAAATTT
259 TGCCAACAAAAATACAAGGATCACGTCTACCAAGTT-TGGGCCAAAACTCCTTTCGAAAAAATTT
* * *
15631107 TAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATTATGAAAAATATAAAACGAGTCGTCTTGCCA
323 TAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATA-AAAACGAGTCGTC-TGCCA
* **
15631172 TGAAACATCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGTTATTGG
386 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
*
15631237 CATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
451 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * * *
15631302 ACGCCTCTCTGGCCGGCATAGTGCCCGCCAGCCCGCCTGCTCGCTCCTTTCGTTGGTTGGCTTAG
516 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCG-CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * *
15631367 GCATACGGAGTTCATTCCCAATCTAAGATCAGACCGGACCAAGGGTTGCGGCAGCAGGATCGACA
580 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGACA
* * ** *
15631432 GCACGCTGAGGGGGACCCGGTCGATCCTCGGCTTGTGCATCCCGCCCTTCTGGCCGACTGAGCGC
645 GCACGATGAGGGGGACCCGGTCGATCCCCAACTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGC
* *
15631497 CCGCACGCTCTTTTCATGTGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAG
710 CCGCACGCTCTTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAG
* * ** * * *
15631562 TTCATTCCCAGTCTAAGATCATATCGGCTGAGGGTTTCGACAGCACATGCAGGGCTTGGACATGT
775 TTCATTCCCAGTCTAAGATCAGACCAACCGAGGGTTACGACAGCACATGCAGGGCTCGGACATGT
*
15631627 GCTGGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGAAGAACCTG
840 GCTAGTGCCGCATTTTTCTTTGCCGGGGCACCATCGTCGAAGAACCTG
*
15631675 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGTGGGGG-GTGTGCACACATGATGTGGGA
1 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCG-GGGGGTGTGTG--CACATGATGTGGG-
* *
15631739 TGGGTGCTGGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACC
62 TGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACC
*
15631804 CCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
127 CCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGG
* * * *
15631869 GACACTTTTTTCAAATGGTTACAAAATCTTGCACAGTTCTAG-TTTTCAGCTGAATTTTTTTGTG
192 GACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTCAGCTGAATTTTTTTGTG
* *
15631933 CATGCCAACAAAAATACATGGATCATGTCTACCAAGTTTGGGGCCAAAACTCC-TTCTGAAAAAA
257 CATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-GGGCCAAAACTCCTTTC-GAAAAAA
** *
15631997 TTTTAAAAAATCTTGAACAGCAAAAAGTTTCAAAAATTGTGAAAAATAAAAA--A-TC-T-TGCC
320 TTTTAAAAAATCTCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAAAAACGAGTCGTCTGCC
* *
15632057 ATGAAACTTCACGTGAAGGCTTAAGGGACAATTATATGAATTTACAAGCCATAAAAATGGCATTG
385 ATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTG
** *
15632122 GCACACAGAAATATGATGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
450 GCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCAT
* *
15632187 CCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGGCCACCCGCCCGCTCGTTTCGTCGGTTGGCTTA
515 CCCGTCTCTCTGGCCGGCGTAGTGCCCGCCC-GCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTA
* * * *
15632252 GGCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTAAGGGTTGTGATAGCAGGATC-AG
579 GGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGA-
* * * * *
15632316 CAGCAC-ATAGAGGGTGACCCGGTTGATCCCCAACTTGTGCATCCTGCCCCTCTGGCTGGCTGAG
643 CAGCACGAT-GAGGGGGACCCGGTCGATCCCCAACTTGTGCATCCCGCCCCTCTGGCCGACTGAG
* * *
15632380 CGCCCGCACGCT-TGTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCGCAGTCTAAGCGTAT
707 CGCCCGCACGCTCT-TTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC
** ** * *
15632444 GTAGTTCATTCCCAGTCTAAGATCAGACCTAACCGAGGGTTACGGTAGCACATGCTGGGCTCGGG
771 AAAGTTCATTCCCAGTCTAAGATCAGACC-AACCGAGGGTTACGACAGCACATGCAGGGCTCGGA
* * *
15632509 CATTTGCTAGTGCCGCATTTTTCTTTGTCGGGGCGCCATCGTCAGAGCATCGTCGGAGAACCTG
835 CATGTGCTAGTGCCGCATTTTTCTTTG-CCGGG-G-CA----C----CATCGTCGAAGAACCTG
* **
15632573 ACCGGTGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGTGTGTGCACATGATGTGCGGTGG
1 ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGTGCACATGATGTG-GGTGG
*
15632638 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCT
65 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCT
* * * * * *
15632703 TTAAATAGCATTTAAGATTTTATAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTAAAAAGGGGAC
130 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
15632768 ACTTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTCAGCTGAATTTTATTGTGCAT
195 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTCAGCTGAATTTTTTTGTGCAT
* * *
15632833 GCCAACAAAAATACAAGGATCACGTCTACTAGGTTTGGGACCAAAACTCCTTTCGAAAATATTTT
260 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGG-CCAAAACTCCTTTCGAAAAAATTTT
* *
15632898 AAAAAATCTCAAACCGCATAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTAGCCAT
324 AAAAAATCTCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATA-AAAACGAGTCGTCT-GCCAT
* *
15632963 GCAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
387 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
15633028 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACAATCGATCCACGGCTTGCGCATCC
452 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* *
15633093 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCACTCGTTTTGTCGGTTGGCTTAGG
517 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCC-GCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * *
15633158 CATACGGAGTTCATTCCTAGTCTAAGATCAGACTAGACCGAGGGTTGCGACAGCA
581 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCA
15633213 CATGCTGGGC
Statistics
Matches: 1362, Mismatches: 139, Indels: 61
0.87 0.09 0.04
Matches are distributed among these distances:
885 3 0.00
886 367 0.27
887 52 0.04
888 5 0.00
889 3 0.00
890 3 0.00
891 37 0.03
892 16 0.01
893 278 0.20
894 5 0.00
896 171 0.13
897 122 0.09
898 61 0.04
900 1 0.00
901 2 0.00
902 1 0.00
903 4 0.00
904 231 0.17
ACGTcount: A:0.26, C:0.24, G:0.23, T:0.26
Consensus pattern (887 bp):
ACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGTCGGGGGGTGTGTGCACATGATGTGGGTGGG
TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCTT
TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTCAGCTGAATTTTTTTGTGCATG
CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGCCAAAACTCCTTTCGAAAAAATTTTAA
AAAATCTCAAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAAAAACGAGTCGTCTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATAC
GGAGTTCATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCGACAGCAGGATCGACAGCACGA
TGAGGGGGACCCGGTCGATCCCCAACTTGTGCATCCCGCCCCTCTGGCCGACTGAGCGCCCGCAC
GCTCTTTTCATGGGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACAAAGTTCATT
CCCAGTCTAAGATCAGACCAACCGAGGGTTACGACAGCACATGCAGGGCTCGGACATGTGCTAGT
GCCGCATTTTTCTTTGCCGGGGCACCATCGTCGAAGAACCTG
Found at i:15634284 original size:717 final size:716
Alignment explanation
Indices: 15632446--15634647 Score: 3121
Period size: 717 Copynumber: 3.1 Consensus size: 716
15632436 AAGCGTATGT
* * * *
15632446 AGTTCATTCCCAGTCTAAGATCAGACCT-AACCGAGGGTTACGGTAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCAGATCTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * *
15632510 ATTTGCTAGTGCCGCATTTTTCTTTGTCGGGGCGCCATCGTCAGAGCATCGTCGGAGAACCTGAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGAC
* * * * *
15632575 CGGTGGCATTGGGGTTCCGGTGATCGGGGGGGTCGGGGGGTGTGTGCACATGATGTGCGGTGGGT
131 CGGCGGCATTGGGGTTCCGATGATC-GGGGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGT
* *
15632640 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTAAGAACTCACACCCCTTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
* * * **
15632705 AAATAGCATTTAAGATTTTATAGGTTTGGTGCCAGTAGCCATTAAAGTGTCTAAAAAGGGGACAC
260 AAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATTGGGGACAC
* *
15632770 TTTTTTCAAATGGTCATAAAATCTTGTACACTTCGAGTTTTTCAGCTGAATTTTATTGTGCATGC
325 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTT-AGCTGAATTTTTTTGTGCATGC
* * *
15632835 CAACAAAAATACAAGGATCACGTCTACTAGGTTT-GGGACCAAAACTCCTTT-CGAAAATATTTT
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGA-CAAAACT-CTTTCCGAAAAAATTTT
* * * *
15632898 AAAAAATCTCAAACCGCATAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTAGCCAT
452 AAAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
15632963 GCAACTTCACGTGAAGGCTTCAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
517 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* *
15633028 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACACAATCGATCCACGGCTTGCGCATCC
582 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* ** *
15633093 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCTGCCCGCCCACTCGTTTTGTCGGTTGGCTTAGG
647 CGTCTCTCTGGCCGGTGTA-TTTCCGCCCGCCTGCCCG-CCGCTCGTTTTGTCGGTTGGCTTAGG
15633158 CATACGG
710 CATACGG
* * * *
15633165 AGTTCATTCCTAGTCTAAGATCAGA-CTAGACCGAGGGTTGCGACAGCACATGCTGGGCTCAGGC
1 AGTTCATTCCCAGTCTAAGATCAGATCTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * *
15633229 ACGTGCTGGTGTCGTATTTTTCTTCATCGGGGCACCATCGTCAGAGCATCGTTGGAGAACCTAAC
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGAC
* * * *
15633294 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCTGGGGTGTGTGAGCACATGATGTGTGATGGGT
131 CGGCGGCATTGGGGTTCCGATGATC-GGGGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGT
* *
15633359 ACTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAAACTTGAGAACTCACACCCCCTT
195 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTT
* * *
15633424 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTAAAATT-AGGACA
260 AAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AAATTGGGGACA
* * *
15633488 TTTTTTTCAAATGGTCACAAAATGTTGTGCACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
324 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* *
15633553 CAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGAAAAAACTCTTTCCGAAAAAATTTTAA
389 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCTTTCCGAAAAAATTTTAA
** * ** *
15633618 AAAATC-CTGTTCTGCAAAAACTTTCAAAAATTATGAAAATTAGAAAACGAGTCGTCTTGCCATG
454 AAAATCTC-GAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * * *
15633682 AAACTTCACGTGAACGCTTAAGGGTCCATTGTATGAATTTACAGGCCATAAAAATGGCACTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* *
15633747 TGAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
*
15633812 GTCTCTCTGGCCGGTGTATTTCTCGCCCGCCTGCCCGCTCGCTCATTTTGTCGGTT-GCTTAGGC
648 GTCTCTCTGGCCGGTGTATTTC-CGCCCGCCTGCCCGC-CGCTCGTTTTGTCGGTTGGCTTAGGC
15633876 ATACGG
711 ATACGG
15633882 AGTTCATTCCCAGTCTAAGATCAGATC-GGA-CGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
1 AGTTCATTCCCAGTCTAAGATCAGATCTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * *
15633945 ATGTGCCGGTGCCGCATTTCTCTTCGTCAGGGCACCATTGTC-GAAGCATCGCCAGAGAACCTGA
66 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAG-AGCATCGTCGGAGAACCTGA
* ** * *
15634009 CCGACGGTGTTAGGGTTTCGATGATCAGGGGGGCCGGGGGGGTGTGAGCACATGATGTGCGATGG
130 CCGGCGGCATTGGGGTTCCGATGATC-GGGGGGCC-GGGGGGTGTGAGCACATGATGTGCGATGG
* * * *
15634074 GTGCTGGTACTTGGCCCCTATATTGGCCGCCTATCCCTAATCAAACCTCGAGAACTCACACCCCC
193 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCC
15634139 TTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATTGGGGAC
258 TTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATTGGGGAC
* * *
15634204 ACTTTTTTCAAATGGTCACAAAATCTTGTAAACTACGAGTTTTTAGCTGATTTTTTTTGTGCATG
323 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * * ** *
15634269 CCAACAAATATACAAGAATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCTAAAAAAAGTTTA
388 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCTTTCCGAAAAAATTTTA
* *
15634334 AAAAATCTCGAACTACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
453 AAAAATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* * *
15634399 AAACTTCACATGAAGGGTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
518 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * * *
15634464 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGATTGTGCATCCC
583 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * *
15634529 GTCTCTCTGGCCGGTGTAGTGTCGGCCCGCCCGCCCGACCGCTCGTTTCGTCGGTTGGCTTAGGC
648 GTCTCTCTGGCCGGTGTA-TTTCCGCCCGCCTGCCCG-CCGCTCGTTTTGTCGGTTGGCTTAGGC
*
15634594 ATACGA
711 ATACGG
* ** *
15634600 AGTTCATTCCCAGTCTAAGATC-GGTCTGGACTAAGGGTTGCAGCAGCA
1 AGTTCATTCCCAGTCTAAGATCAGATCTGGACCGAGGGTTGCGGCAGCA
15634648 AGATTGACAG
Statistics
Matches: 1312, Mismatches: 154, Indels: 34
0.87 0.10 0.02
Matches are distributed among these distances:
715 1 0.00
716 113 0.09
717 524 0.40
718 335 0.26
719 336 0.26
720 3 0.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.27
Consensus pattern (716 bp):
AGTTCATTCCCAGTCTAAGATCAGATCTGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCAGAGCATCGTCGGAGAACCTGAC
CGGCGGCATTGGGGTTCCGATGATCGGGGGGCCGGGGGGTGTGAGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTA
AATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAATTGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGACAAAACTCTTTCCGAAAAAATTTTAAAA
AATCTCGAACTGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGTGTATTTCCGCCCGCCTGCCCGCCGCTCGTTTTGTCGGTTGGCTTAGGCATACG
G
Found at i:15635585 original size:874 final size:882
Alignment explanation
Indices: 15633874--15637236 Score: 4173
Period size: 896 Copynumber: 3.8 Consensus size: 882
15633864 GGTTGCTTAG
* *
15633874 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGA-CGAGGGTTGCGGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
* * * *** *
15633938 CTCGGGCATGTGCCGGTGCCGCATTTCTCTTCGTCAGGGCACCATTGTCGAAGCATCGCC-AGAG
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGA-AG
*** * * *
15634002 AACCTGACCGACGGTGTTAGGGTTTCGATGATC-AGGGGGGCCGGGGGGGTGTGAGCACATGATG
130 AACCTGACCGACGACATTAGGGTTCCGACGATCGA-GGGGGCC-GGGGGGTGTGCGCACATGATG
* * *
15634066 TGCGATGGGTGCTGGTACTTGGCCCCTATATTGGCCGCCTATCCCTAATCAAACCTCGAGAACTC
193 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
*
15634131 ACACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCT-AA
258 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
* ** *
15634195 ATTGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTAAACTACGAGTTTTTAGCTGATTTTTT
323 A-TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTT
* * * **
15634260 TTGTGCATGCCAACAAATATACAAGAATCACGTCTACCAAGTTTGAGGCCAAAACTCCTTCTAAA
387 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAA
* * * * *
15634325 AAAAGTTTAAAAAATCTCGAACTACAAAAAGTTTTAAAAATCGTGAAAAATAGAAAACGAGTCGT
452 AAAATTTTAAAAAATCTCAAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGT
* * *
15634390 CTTGCCATGAAACTTCACATGAAGGGTTAAGGGACCATAGTATGAATTTACAAGCCATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* *
15634455 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACTGATT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* ** * * *
15634520 GTGCATCCCGTCTCTCTGGCCGGTGTAGTGTCGGCCCGCCCGCCCGACCGCTCGTTTCGTCGGTT
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTT
* * * *
15634585 GGCTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCGGTCTGGACTAAGGGTTGCAGCAGCAAG
712 GGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATAGATC-AGACTAAGGGTTGCAGCAGCAAG
* * * *** * * *
15634650 ATTGACAGCACGTAGAGGGGGACTCGACCGAT-CTCGGACTTGCAAATCTCGCCCTTCTGGCCGA
776 ATCGGCAGCACGTAGAGGGGGACTCGACCGATCCCCGG-CTTGTGCATCCCACCCCTCTGGCCGA
* *
15634714 CTGAACGATCGCACGCTCGTTTTGTGGG-AT-GA-C-TT-AG-
840 CTGAGCGACCGCACGCTCGTTTTGTGGGTATAGATCATTCAGA
* * * * *
15634751 GCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGATCGAGGGTTGTGACAGCACATACTAGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
* * ** * * * *
15634816 TTGGGGCATGCACTGGCGCCGTATTTTTCTTCATCGGGGCACCATCGCCGGAGCATCGCCGAAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
* * * * ** * *
15634881 ACCTGACCGACGAAAATGGGGTTCTGGTGATCGATGGGGCCGGGGGGTGTGCGCACATGATGTGT
131 ACCTGACCGACGACATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
* *
15634946 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCGAGAGCTCACA
196 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* * * *
15635011 TCCCCTTACAA-A-CATTTGAGATGTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAAT
261 CCCCCTTA-AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* *
15635074 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTG
*
15635139 TGCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCG-AAAA
390 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
** *
15635203 ATTTTAAAAAATCTTGAACCATAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTT
455 ATTTTAAAAAATCTCAAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTT
* * *
15635268 GCCATTAAACTTCACGTGAAGGCTTAA-GAACCATTGTATGGATTTACAAGCCATAAAAATGGCA
520 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * *
15635332 TTGGCACACAGAAATGTGAAGATGTGCCTAAACCCACCTACCACCCTATCAATCCACGGCTTGCG
585 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
15635397 CATCCCATCCCTCTGGCCGACGTAGTGCCCGCCCGCCAGCCCGTCCGCTCGTTTCGTCGGTTGGC
650 CATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGC
* * * * * *
15635462 TTAGGCATACGGAGTTCATTCCCAATCTAGGATAAGATCAGACCAAGGGTTACGGTAGCAAGATC
715 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAT-AGATCAGACTAAGGGTTGCAGCAGCAAGATC
* * *
15635527 GGCAGCTCGCAGAGGGGGACTCGACCGATCCCCGGCTTGTGCATCCCTCCCCTCTGGCC-AGCTG
779 GGCAGCACGTAGAGGGGGACTCGACCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGA-CTG
*
15635591 AGCGCCCGCACGCTCGTTTTGTGGGTTGACTTATTCATACGGAGTTCATTACCAGTCTAA
843 AGCGACCGCACGCTCGTTTTGT-GG--G------T-ATA--GA--TCATT--CAG----A
* *
15635651 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATTGAGGGTTACGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
* * * *
15635716 CTGGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGGGGCACCATCATCGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
* * * * * * *
15635781 ACATGACAGGCGGCATTGGGGTTCCGGCGATCG-GTGGGGTCGGGGGGGTGTGCGCACATGATGT
131 ACCTGACCGACGACATTAGGGTTCCGACGATCGAG-GGGG-CCGGGGGGTGTGCGCACATGATGT
* * * *
15635845 ACGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATTCCTCATCAAACCTCAAGAGCTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
15635910 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* * *
15635975 TGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTGGCTGAATTGTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
* *
15636040 GTGCATGCCAACAAAAATGCAAGGATCACGTCTCCCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* *
15636105 AATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
454 AATTTTAAAAAATCTCAAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15636170 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCACAAAAATGGC
519 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * * ** *
15636235 AATGGCATGTAGAAATACAAAGATGTGCCTAAACCCACCTACCACCATATCGATCCACGGCTTGC
584 ATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC
* * * *
15636300 GCATCTCGTCTCTCTGGCCGGCATAGT----GCCCGCCCG--C-T-CGCTTGTTTCGTCGGTTGG
649 GCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGG
* * * * * *
15636357 CTTAGGCATACGGAGTTCATTCCTAGTATAAGATTGGA-CCGAACTGAGGGTTGCAGCAGCAGGA
714 CTTAGGCATACGGAGTTCATTCCCAGTCTAAGA-TAGATCAG-ACTAAGGGTTGCAGCAGCAAGA
* * * * * * *
15636421 TCGGTAACACGTAGATGGGGACCCGACCGATCCCTGACTTGTGCATCCCACCACTCTGGCCGACT
777 TCGGCAGCACGTAGAGGGGGACTCGACCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGACT
* *
15636486 GAGC-ACCCGCACACTCGTTTCGTGGCTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAA
842 GAGCGA-CCGCACGCTCGTTT--T-G--TG-----GGTATA--GA--TCATT--CAG----A
* * * **
15636547 GCATATGGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
* * * * **
15636612 CTCGAGCATGTGCTGGTGCCGTATTTTTCTTTGTTGGGGCACCATCACCGGAGCATCGCCGTCGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
* *
15636677 ACCTGACCGGC-AGCATTAGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCGCACATGATATG
131 ACCTGACCGACGA-CATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTG
* *
15636740 CGATGGATGCTGGTACTTGGCCCTTAGATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCAC
* *
15636804 A-CCCCTTAAAGAGCACTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * * * *
15636868 AGGGACACTTTTTTCAACTGGTCACAAAACCTTGTACAC-TTCATTTTTTTAGCTGAATTTTTTT
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGA-GTTTTTAGCTGAATTTTTTT
*
15636932 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAA
389 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * ** *
15636997 AATTTTAAAAGAGCTCAAACCATAAAAAGTTTCT-AAAATTGTGAAAAATAGAAAACGAGTCAAT
454 AATTTTAAAAAATCTCAAACCATAAAAAGTTT-TAAAAATCATGAAAAATAGAAAACGAGTC-GT
* * *
15637061 CTTGCCATGAAACTTCACGTGAAGGCTAAAGGGACCATTGTATGAATTTACATGCGATAAAAATG
517 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* * *
15637126 GCATTGGCACGCAAAAATATGAAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTT
582 GCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT
* * * * *
15637191 GCGCATCTCGTCTCTTTGGCCGAAGTAGTACCCACCCGCCCGCCCG
647 GCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCG
15637237 CCCAGTCTAA
Statistics
Matches: 2161, Mismatches: 260, Indels: 107
0.85 0.10 0.04
Matches are distributed among these distances:
873 1 0.00
874 266 0.12
875 96 0.04
876 157 0.07
877 129 0.06
878 104 0.05
879 2 0.00
885 2 0.00
888 2 0.00
891 4 0.00
892 231 0.11
893 155 0.07
894 70 0.03
895 8 0.00
896 300 0.14
897 11 0.01
898 2 0.00
899 2 0.00
900 153 0.07
901 96 0.04
902 167 0.08
903 91 0.04
904 111 0.05
905 1 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (882 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGATCGAGGGTTGCGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCACCGGAGCATCGCCGAAGA
ACCTGACCGACGACATTAGGGTTCCGACGATCGAGGGGGCCGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGT
GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
TTTTAAAAAATCTCAAACCATAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTG
CCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCAT
TGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGC
ATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCGTCCGCTCGTTTCGTCGGTTGGCT
TAGGCATACGGAGTTCATTCCCAGTCTAAGATAGATCAGACTAAGGGTTGCAGCAGCAAGATCGG
CAGCACGTAGAGGGGGACTCGACCGATCCCCGGCTTGTGCATCCCACCCCTCTGGCCGACTGAGC
GACCGCACGCTCGTTTTGTGGGTATAGATCATTCAGA
Found at i:15635662 original size:26 final size:26
Alignment explanation
Indices: 15635626--15635677 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15635616 TTGACTTATT
15635626 CATACGGAGTTCATTACCAGTCTAAG
1 CATACGGAGTTCATTACCAGTCTAAG
*
15635652 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTACCAGTCTAAG
15635678 ATCAGACCGG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (26 bp):
CATACGGAGTTCATTACCAGTCTAAG
Found at i:15636557 original size:26 final size:26
Alignment explanation
Indices: 15636521--15636573 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15636511 CTTGACTTAG
15636521 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15636547 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15636573 G
1 G
15636574 ATCAGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15637840 original size:663 final size:668
Alignment explanation
Indices: 15636563--15637875 Score: 1950
Period size: 663 Copynumber: 2.0 Consensus size: 668
15636553 GGAGTTCATT
**
15636563 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGAGCATGTGCTGG
1 CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGG
* ** * *
15636628 TGCCGTATTTTTCTTTGTTGGGGCACCATCACCGGAGCATCGCCGTCGAACCTGACCGGCAGCAT
66 TGCCATATTTTTCTTTGCCGGGGCACCAT--CC-G-G-ATCG-CGTAGAACCTGACCGACAGCAT
** * *
15636693 TAGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATATGCGATGGATGCTGGTACTT
125 TAGGGTTCCGACGATCGGGGGGCCGAAGGGAGTGCGCACATGATATACGATGGATGCTGGTACTT
*
15636758 GGCCCTTAGATTGGCCCCCTATCCCTCATCAAACTCGAGAACTCACACCCCTTAAAGAGCACTTG
190 GGCCCTTAGATTGGCCCCCTATCCCTCATCAAACTCGAGAACTCACACCCCTTAAAGAGAACTTG
*
15636823 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAACTG
255 AGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATG
* *
15636888 GTCACAAAACCTTGTACACTTCATTTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACA
320 GTCACAAAACCTTGTACACTTCATGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * * * *
15636953 AGGATCACGTCTACCAAGTTCGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAGAGCTCAAACC
385 AGGATCACGTCTACCAAGTTCGGGGCCAAAAATCCTTCCAAAAAAAGTTTAAAAAACCTCAAACC
* *
15637018 ATAAAAAGTTTCTAAAATTGTGAAAAATAGAAAACGAGTCAATCTTGCCATGAAACTTCACGTGA
450 ATAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCAATCTTGCCATGAAACTTCACGTGA
* * * *
15637083 AGGCTAAAGGGACCATTGTATGAATTTACATGCGATAAAAATGGCATTGGCACGCAAAAATATGA
515 AGGCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACGCAAAAAGATGA
* *
15637148 AAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGTTTGCGCATCTC-GTCTCTTTGGCC
580 AAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC-CAGTCTCTCTGGCC
15637212 GAAGTAGTACCCACCCGCCCGCCCG
644 GAAGTAGTACCCACCCGCCCGCCCG
* *
15637237 CCCAGTCTAAGATCAGA-CTGCACCGAGGGTTGTGACAGCACATGCTGGGCTCGAGCATGTGCTG
1 CCCAGTCTAAGATCAGACCAG-ACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTG
* * * *
15637301 GTGCCATATTTTTCTTTGCCGGGGTACCAT-C-G-TTG-G-AGAACTTGACCGACGGCATTAGGG
65 GTGCCATATTTTTCTTTGCCGGGGCACCATCCGGATCGCGTAGAACCTGACCGACAGCATTAGGG
*
15637361 TTCC-AGCGATCGGGGGGCCCGAAGGGAGTGCGCACATGATATACGATGGGTGCTGGTACTTGGC
130 TTCCGA-CGATCGGGGGG-CCGAAGGGAGTGCGCACATGATATACGATGGATGCTGGTACTTGGC
* * *
15637425 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACTCCCCCTTAAAGAGAACTTGA
193 CCTTAGATTGGCCCCCTATCCCTCATCAAA-CTCGAGAACTCAC-ACCCCTTAAAGAGAACTTGA
*
15637490 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAGAATAGGGACA-TTTTTTCAAATGG
256 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGG
* *
15637554 TCACAAAATCTTGTACACTTTGA-GTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
321 TCACAAAACCTTGTACAC-TTCATGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACA
* * *
15637618 AGGATCATGTCTACCAAGTTTGGGG-CAAAAATCCTTCCAAAAAAAGTTTAAAAAATCCT-GAAC
385 AGGATCACGTCTACCAAGTTCGGGGCCAAAAATCCTTCCAAAAAAAGTTTAAAAAA-CCTCAAAC
* * *
15637681 CGTAAAAAGTTTCAAAAATTATGAAAAATAGAAAAGGAGTC-GTCTTGCCATGAAACTTCACGTG
449 CATAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCAATCTTGCCATGAAACTTCACGTG
* * *
15637745 AAGGCTTAAGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCACTGGCACGCAGAAAGATG
514 AAGGCTAAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACGCAAAAAGATG
*
15637810 AAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCC
579 AAAATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCC
15637875 G
644 G
15637876 GCATAGTGCT
Statistics
Matches: 580, Mismatches: 51, Indels: 27
0.88 0.08 0.04
Matches are distributed among these distances:
662 2 0.00
663 176 0.30
664 137 0.24
665 105 0.18
666 73 0.13
668 1 0.00
671 1 0.00
673 2 0.00
674 83 0.14
ACGTcount: A:0.29, C:0.24, G:0.22, T:0.25
Consensus pattern (668 bp):
CCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATGTGCTGG
TGCCATATTTTTCTTTGCCGGGGCACCATCCGGATCGCGTAGAACCTGACCGACAGCATTAGGGT
TCCGACGATCGGGGGGCCGAAGGGAGTGCGCACATGATATACGATGGATGCTGGTACTTGGCCCT
TAGATTGGCCCCCTATCCCTCATCAAACTCGAGAACTCACACCCCTTAAAGAGAACTTGAGATTT
TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACACTTTTTTCAAATGGTCACA
AAACCTTGTACACTTCATGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
ACGTCTACCAAGTTCGGGGCCAAAAATCCTTCCAAAAAAAGTTTAAAAAACCTCAAACCATAAAA
AGTTTCAAAAATTATGAAAAATAGAAAACGAGTCAATCTTGCCATGAAACTTCACGTGAAGGCTA
AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACGCAAAAAGATGAAAATGT
GCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCAGTCTCTCTGGCCGAAGTAG
TACCCACCCGCCCGCCCG
Found at i:15638109 original size:26 final size:26
Alignment explanation
Indices: 15638080--15638132 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15638070 GTTGATATAG
*
15638080 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
*
15638106 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15638132 G
1 G
15638133 ATCGAACTAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15638474 original size:12 final size:12
Alignment explanation
Indices: 15638459--15638493 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
15638449 TCTTGCACAC
15638459 GCTGAATTTTTA
1 GCTGAATTTTTA
15638471 GCTGAATTTTTA
1 GCTGAATTTTTA
15638483 GCTGAATTTTT
1 GCTGAATTTTT
15638494 TTGTGCATGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.23, C:0.09, G:0.17, T:0.51
Consensus pattern (12 bp):
GCTGAATTTTTA
Found at i:15638872 original size:26 final size:26
Alignment explanation
Indices: 15638836--15638886 Score: 102
Period size: 26 Copynumber: 2.0 Consensus size: 26
15638826 TTGAATTAGG
15638836 CATACGGAGTTCATTCCCAGTCTAAT
1 CATACGGAGTTCATTCCCAGTCTAAT
15638862 CATACGGAGTTCATTCCCAGTCTAA
1 CATACGGAGTTCATTCCCAGTCTAA
15638887 GATCGGACCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (26 bp):
CATACGGAGTTCATTCCCAGTCTAAT
Found at i:15639763 original size:26 final size:26
Alignment explanation
Indices: 15639733--15639785 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15639723 GTTGACGTAG
15639733 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15639759 GCATATGGAGTTCATTCCCATTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15639785 G
1 G
15639786 ATCGGATCAG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15641091 original size:902 final size:901
Alignment explanation
Indices: 15638567--15651522 Score: 14976
Period size: 903 Copynumber: 14.3 Consensus size: 901
15638557 AAAAAATTTC
*
15638567 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCACATCCCGTCTCTCTGGCCGAC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * *
15638632 GTAGTGCCCGCCC-AC-CC-GCCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCC
66 GTAGTGCCCGCCCGCCGCCATCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * * * * *
15638694 CAGTCTAAGATTGGACCGGATCGAGGGTTACGGTAGCAGGATCGGCAGCATGCAGAGGGGGACCC
131 CAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC
* * * * * *
15638759 GACCAATCCTCGGCTTGCGCATCCCGCCCCACTGGTCGGTTGAGCGCCCGCACGCTCGTTTCGTC
196 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * *
15638824 AGTTGAATTAGGCATACGGAGTTCATTCCCAGTCTAATCATACGGAGTTCATTCCCAGTCTAAGA
261 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
* ** * ** * * *
15638889 TCGGACCAGACTAAGGGTTGGGGCAGCACATGCTACGCTCGGGCAAGTGCTGGTGCCGTATTTTT
326 TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
* * * * * * *
15638954 CTTCGTCGGGTCACCATCGTCGGAGCATTGCCAGAGAACCTGACCGGCGGTAATGGGGTTTCGAC
391 CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
* *
15639019 GATCAGGGAGGCTGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
456 GATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATAT
15639084 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
520 TGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTAC
* * *
15639149 AGGTTTACTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACAATTTTTTCAAATGGTCACAAAA
585 AGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAA
* * * *
15639214 TCTTGCACACTTTGAATTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATTACG
650 TCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACG
* * * * *
15639279 --T---AAGTTTGGGTCCAAAACTCCTTCCGAAAAAATTTCAAAAAAATCCCGAACCCCAAAAAA
715 TCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTT-TAAAAAATCCCAAACCGCAAAAAG
** * * * *
15639339 TTTTGAAAATCGTGAAAAATAGAAAACAAGTGGTCTTGCCATGAAACTTCACGTGAAGGCTTAAT
779 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
* * *
15639404 GGACCGTTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAA-
844 GGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
* *
15639461 ATTGTGCC-AAACACACCTACCACCCTATCGATCCACGGCTTGCGCATCCGGTCTCTCTGGCCGA
1 A-TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA
* * * *
15639525 CGTAGTGCTCGCCCGCC-CACCTGCCCACTCGTTTCGTCGATTGGCTTAGGCATACGGAGTTCAT
65 CGTAGTGCCCGCCCGCCGC-CAT-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * *
15639589 TCCCAGTCTAGGATCGGACCGGATCGAAGGTTGCGGCAGCATGATC-AGCAGCACACAGAGGGGG
128 TCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGG
* * * * * * *
15639653 ACCCAATCGATCCCCAGCTTGCGCATCCCGCCCCTCTGGCCGACTGAGCGCCTGCAAGCTCATTT
192 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * * *
15639718 CATGGGTTGACGTAGGCATACGGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCCATTCT
257 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *
15639783 AAGATCGGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCACAT
322 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCAT
** * * * *
15639848 TTTTCTTCACCGGGTCACCATCGTCGGATCATCGCCGGAGAACTTGACCGACGGCATTGGGCTTC
387 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
* *
15639913 C-AGCGATCGAGGGGGTCGGGGGG-GATGCACACATGATGTGCGATGGGTGCTGGTACTTGGCCC
452 CGA-CGATCG-GGGGGCCGGGGGGTG-TGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
* * * *
15639976 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACAGCACCTTCAAGAGTATTTGAGA
514 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
15640041 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTC
579 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * * **
15640106 GCAAAATCTTGTACACTTCGAATTTTTAGCCGAATTTTTTTGTGCATGTTAACAAAAATACAAGG
644 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
** * **
15640171 ATCACGTCTAAGAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCAAACCAAA
709 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCA
* *
15640236 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTCAAGGC
774 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
15640301 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAGGCAGAAATATGAAG
839 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
* * * *
15640364 ATGTGCCTAAACCCACCTACCACCCAATCGATCAACGGCTTGCGCATCCCGTCTCTCTGGCTGGC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * * *
15640429 GTAGTGCCCGCCCACTCGCCATCCCGCTGGTTTCATCGGTTGGCTTAGGCATATGGAGTTCCTTC
66 GTAGTGCCCGCCCGC-CGCCATCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * *
15640494 CCAATCTAAGATCGGACTGGATTC-AGGGTTGCGGCAACAGGATCGACAGCACGTAGAGGGGGAC
130 CCAGTCTAAGATCGGACTGGA-TCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC
* * * * * *
15640558 CCGATCGATCCTCGGCTTGCACATCTCGCCCCTCTGGCCGGCTGAGTGCCCGCACGCTCGTTACG
194 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* ** ** *
15640623 TGGGTTGACTTAGGTATACGGAGTTTGTTCTTAATCTAAGCATACGGAGTTCATTCCCAGTCTAA
259 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15640688 GATTGGACCGGACCGAGGGTTGCAGTAGCACATGCTGGGCTCGAACATGTGCTGGTGCGGCATTT
324 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTT
* * * *
15640753 TTCTTCGTCGGGTCACCATCATCGGAGCATCACCGGAGAACCTGACCGACGGCATTGGGGTTTCG
389 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* *
15640818 GCGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATA
454 ACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATA
* * *
15640883 TTGGCCCCCTATCCCTTATCAAACCTAGAGAACTCATACCCCCTTAAAGAGCATTTGAGATTTTA
519 TTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTA
*
15640948 CAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
584 CAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAA
* * * *
15641013 ATCTTGTACACTTCGAGTTTTTAGCTGAATTCTTTTGTGCATGACAAAAAAAATACAAGGATCAG
649 ATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAC
15641078 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG
714 GTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAG
* * *
15641143 TTTCAAAAATCTTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACGTCACGTGAAGGCTTAAG
779 TTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAG
*
15641208 GGACCATTGTATG-ATTTCACAAGCCATAAAAATGGCATTGGCAAGTAGAAATATGAAG
844 GGACCATTGTATGAATTT-ACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
*
15641266 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTTTGGCCGAC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
** ** * * * * * *
15641331 GGGGCACCCACTCGCCCGTTCA-CCCGCTCATTTCATCGATTGGCTTAGGCATACGGAGTTCATT
66 GTAGTGCCCGCCCG-CCG-CCATCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * ** * * **
15641395 CCCTGTCTAAGATTGGACCGGATTGAGGGTTGCGATAGAAGCATCGGTAGCACGCAGAGGGGGAC
129 CCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC
* * ** * * * * *
15641460 CTGACCGATCCCCGTCTTGCGCATCCCGCCCCTCTGGCCGATTCAGTGCCCGCACGTTTGTTT-T
194 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
* * * *
15641524 TGGGTTCACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATATGGAGTTCATTCCTAGTCTAA
259 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* * * * *
15641589 CATCGGATCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAACATGTGCTGGTGTCACATTT
324 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTT
* * *
15641654 TTCTTCGCCGGGGCACCATCGTCGGAGCATCGCCAGAGAACCTGACCGACGGCAGTGGGGTTCCG
389 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
* * ** **
15641719 ACGATTGGGGGCACCGGGGGGGTGTGCGCACATCTTGTGCGATGGGTGCTGGTACTTTCCCCTTA
454 ACGATCGGGGG-GCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
15641784 TATTGGCCTCGTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
517 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
15641849 TACAGGTTTGCTGCTAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAATGGTCACA
582 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* * * * *
15641914 AAATCTTGTACACTTTGAGTTTTTAGCTAAATTTTTTTATGCATGCCAAAAAAAATACAACGATC
647 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
15641979 ACGTCTACCAAGTTTGGGGCCAAAACTCTTTCCGAAAAAATTTTAAAAAATCCCGAACCACAAAA
712 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAA
*
15642044 AGTTTAAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
777 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
* * ***
15642109 AGGGACCATTGTATGAATTTACAAGTCAT--AAATGGCATTGGTACACAGAAATATGAAG
842 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
* * * * *
15642167 ATGTGCCTAAACCCACCTACCACCCAATCGATCCACGACTTGCGCATCTCGTCTCTCTGACCGAT
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * *
15642232 GTAGTGCCCACCCGCCCGCCCGCCCGCTTGCCCGCTCGTTTCATCGGTTGGCTGAGGCATACGAA
66 GTAGTG----CCCGCCCG-CCG--C-CAT-CCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* ** * * *
15642297 GTTCATTCCCAGTCTAAGATTGGACCAGA-AGAAGGGTTACGGTAGCAGGATCG---GCA-G-A-
122 GTTCATTCCCAGTCTAAGATCGGACTGGATCG-AGGGTTGCGGCAGCAGGATCGACAGCACGCAG
* * * * *
15642355 A-GGGGACCCTATCGATCCTCGACTTGCGCATCCCGCCCCTCTGGCCGGTTGAGCGCCCGCACGC
186 AGGGGGACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGC
* * * *
15642419 TTGTTTCATGGGTTGACTTTGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTACATTCC
251 TCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCC
* * * * *
15642484 CAGTCTAAGATTGAACCAGACCAAGGGTTACGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG
316 CAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTG
*
15642549 CCGCATTTTTCTTCG-CTGGTGCACCA---T-----CAT---CGGAGAACCTGACCGACGGCATT
381 CCGCATTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATT
* ** *
15642602 GGGGTTTCGATAATCGGGGGGCCGGAGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTT
445 GGGGTTCCGACGATCGGGGGGCCGG-GGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTT
*
15642667 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGTGCATT
509 GGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATT
* * * *
15642732 TGAGATTTTATATGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACACTTTTTCCAAA
574 TGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
* *
15642797 TGGTAACAAAATCTTGTACACCTT-GAGTTTTTAGCTGAACTTTTTTGTGCATGCCAACAAAAAT
639 TGGTCACAAAATCTTGTACA-CTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAAT
* * ***
15642861 ACTAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTTTAAAAAATCTTGA
703 ACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAA
* * * * * * * * * * * *
15642926 GCTGTAAAAAGTTTCGAATATCCTGAAAAATAGAATAA-AAAT-GGCATTGGCATGCGAAAATAC
768 ACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAA-AACGAGTCGTC-TTGCCAT--GAAACT-T
* * * * * * ** * *
15642989 CAAGTTTG-GGGC-CAA--AACTCCTTCAGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTT
828 CACG--TGAAGGCTTAAGGGAC-CATT--GTATGAATTT---ACAA----G--CCATAAAAA--T
** **** * * **
15643050 TCCAAAATCTTG-AAAAATAAAAAACG
877 GGCATTGGCATGTAGAAAT-ATGAA-G
* * *** * * ** * * *
15643076 AGTCGTCTCGCCATGAAACTTCACGTGAAGGCTCAAGGGA-CCATTGTTTGAATTTACAAGCCAT
1 A-T-G--T-GCC-T-AAAC-CCACCT-ACCACCCTATCGATCCA-CG---G--CTTGC--G-CAT
**** ** * * * * *
15643140 AAAAATGGCAT-TGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATC
48 -CCCGTCTC-TCTGGC---C-G----ACG--TA-GTGCC----CGC-CC-GCC-GCC-ATC---C
** ** * * *** *
15643204 GACGACTTGCGCATCCCGTCCCTTTGGC-T-GGCATA-GTGCCTGCCTGCCCGCCCGCCCGCTCA
89 --CG-C-T-CG--TTTCGT-CGGTTGGCTTAGGCATACG-G--AG--T--TCATTC-CCAG-TC-
*** * ** * * ** *
15643266 TTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACTAGATCGAGGGTT
136 TAAGATC-G--GAC-T-GG-AT-C-GAG--GGTT-GC-GGC--AG--CAG----GATCGACAG-C
* *** *** * * *** * * **
15643331 ACGGCAGTAGGATTGGTAGCACGCAGTGGGGGACTCGGTTTTTTC--CCCGGCTTGTGCATCCCG
180 AC-GCAG-AGG---GG--G-AC-CCGACCGATCCCCGGCTTGCGCATCCC-GC----CCCTCTGG
* * * *
15643394 TCCCTCTGGCCAGCTGAGCGCCCACACACTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCAT
231 ---C-C--G---GCTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCAT
** * *
15643459 TCCTGGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACCGAGGGTTGCGGCAG
287 TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGGGTTGCGGCAG
* * * *
15643524 CACATGCTGTGCTC-AGGCATGTGCTGGTGCCACATTTTTCTTCATCGGGGCACCATCGCCGGAG
352 CACATGCTGGGCTCGA-GCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAG
* * * * * * *
15643588 TATCACCGGAGAACCCGACCGGCGGCAATGGGGTTCCGGCGATCGAGGGGGTCGGGGGGTGTGCG
416 CATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGACGATCG-GGGGGCCGGGGGGTGTGCG
* * *
15643653 TACATGATGTGTGATGGGTGCTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCT
480 CACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCT
* * *
15643718 TGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAACTATTAAA
545 TGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAA
* * *
15643783 GTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGAACACTTCGAGTTTTTGGCT
610 GTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCT
*** * * * * *
15643848 GAATTTTTTTGTGCACAACAACAAAAACACAAGGATCATGTCTACCAAGTTCGAGGCAAAAACTC
675 GAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTC
* *
15643913 CTTCC-AAAAGCATTTTAAAAAATCCCGAACCAG-AAAAAGTTTCAAAAATCATGAAAAATAGAA
740 CTTCCGAAAA-AATTTTAAAAAATCCCAAACC-GCAAAAAGTTTCAAAAATCATGAAAAATAGAA
* *
15643976 AACGAGTCGTCTTGCCATGAAACATCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
803 AACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGC
*
15644041 CATAAAAATGGCATTGGCATGAAGAAATATGAAG
868 CATAAAAATGGCATTGGCATGTAGAAATATGAAG
* * * * *
15644075 ATGTGGCTAAACCCACCAACCAGCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGAC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
** * * *
15644140 GTAGTGCCCGCCCGTTTGCCCGT-CCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATT
66 GTAGTGCCCGCCCG-CCG-CCATCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATT
* * * * * * * *
15644204 CCCAGTCTAAGATTGAACTGCAAT-GAAGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGA
129 CCCAGTCTAAGATCGGACTG-GATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGA
* * * * * * *
15644268 CCCGACCGATCCCCAGCTTGCGTATCCCGCCCCTCTGGCCTGCTGAGCGCCCTCACGTTCATTCC
193 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
*
15644333 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTA
258 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* * * * * * *
15644398 AGATCAGATCGGACCGCGGGTTGTGGCAGCACATGCTGGGCACGGGCATGTGCTGGTGCTGCATT
323 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATT
** * * * ** *
15644463 TTTCTTCACCGGGGCACCATCGCCGGAGCATCGCTGGGGAACCTGACCGGTGGAATTGGGGTTCC
388 TTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCC
*
15644528 GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTT
453 GACGATC-GGGGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * * *
15644593 ATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTAACTCCCCCTTAAAGAGCATTTGAGATT
516 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
15644658 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
581 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
15644723 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
646 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* * ***
15644788 CAGGTCTACCAAGTTTGGGGCCAAAACTCCCTT-TGAAAAAATTTTAAAAAAATCTGGAACCGCA
711 CACGTCTACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTT-AAAAAATCCCAAACCGCA
* * * * *
15644852 AAAGGTTTCATAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCATGTGAAGGC
774 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* * *
15644917 TGAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAGAAATATGAAG
839 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
* * * * *
15644980 ATATACCTAAACCCACCTACCATCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGAT
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * *
15645045 GTAGTGCCCG--C-CCG----CCCGCTCGTTTTGTTGGTTGGTTTAGGCATACGGAGTTCATTCC
66 GTAGTGCCCGCCCGCCGCCATCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
* * ** * * * * *
15645103 CAGTCTATGATCAGACTGGATCGAGGGTTATGGTAGTAGGATCGGCAGCACACAGAGGAGGACCC
131 CAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC
** * * * * * * *
15645168 GACCGATCCCTAGCTTACGCATCCTGACCCTCTGGCCGGCTGAGCACCCACATGCTCATTTCGTG
196 GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
* * * * *
15645233 GCTTGACTTAGGCATATGGCGTTCATTCCAAGTCTAAGCATACAGG-GTTCACTCCCAGTCTAAG
261 GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GGAGTTCATTCCCAGTCTAAG
* * * * * * *
15645297 ATCGAACCGGACCGAGGGTTAC-ACTAGCACTTGCAGGGCTCGAGCATGTGTTGGTGCCGTATTT
325 ATCGGACCGGACCGAGGGTTGCGGC-AGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTT
*** * * * * *** * *
15645361 TTCTTCGTCGGGGCACCATAACCGGAGCTTCACCGAAGATCCTGACCGGTTGCTTTGGGGTTTCG
389 TTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCG
15645426 ACGATCGGAGGGGCCGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
454 ACGATCGG-GGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* **
15645491 TATT-GCCTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
517 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
*
15645555 TACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
582 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* *
15645620 AAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATC
647 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * *
15645685 ACGTCTCCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCGAAACCGCAAAA
712 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAA
** * *
15645750 AGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTA
777 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
*
15645815 AGGGACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
842 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
*** * * * *
15645875 ATGTGCCTAAACCCACCTACTGTCCTATCGATCCACAGCTTGTGCATCCTGTCTCTCTGG-CTAG
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-
* * *
15645939 CATAGTGCCCG--C-CCGCCA----GCTCGTTTCGTCGATTGGCTTAGGCATAGGGAGTTCATTC
65 CGTAGTGCCCGCCCGCCGCCATCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* ** * * * * * ** *
15645997 CCAGTCTAAGATCAGACCAGA-CTGAGGGATGCAGCAGCCGGATTGGCAGCACATAGAGTGGGAC
130 CCAGTCTAAGATCGGACTGGATC-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC
* * * *
15646061 TCGATCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGTACGCTCGTTTCA
194 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
15646126 TGGGTTGAC-T-----TA--G-G--------CA---T----AT--GGAGTTCATTCCCAGTCTAA
259 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAA
* ** ** ** **
15646165 GATCAGACCGGACCGAGGGTTATGATAGCACATATTGGGCTC-AGGCATGTG-TCGGTGCCATAT
324 GATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGA-GCATGTGCT-GGTGCCGCAT
* * * * * *
15646228 TTTTCTTTGTCGGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGACGACATTGAGGTTT
387 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
**
15646293 CGGTGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
452 CGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* * *
15646358 TATTGGCCTCTTATCCCTCATCAAACCTTGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTT
517 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* * *
15646423 TACAGGTTTGCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGCTCACA
582 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACA
* ** *
15646488 AAATCTTGTACACTTCGAGTTTTTAGTTGAAGATTTTTGTGAATGCCAACAAAAATACAAGGATC
647 AAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATC
* * ** **
15646553 ACGTCTACCAAGTTTGGGGCCAACACTCATTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAA
712 ACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAA
** * *
15646618 AGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTA
777 AGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTA
15646683 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
842 AGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
* *
15646743 ATGTGCCTAAACCCACCTACCGCCCTATCGATCCACGG-TTGGCGCATTCCGTCTCTCTGGCCGA
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTT-GCGCATCCCGTCTCTCTGGCCGA
* * * * * *
15646807 CATAGTGCCCGCCTGCCCGCCCGT-TCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCAT
65 CGTAGTGCCCGCCCG-CCG-CCATCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * *
15646871 TCCCAGTCTAAGATAGGACTGGA-CTGAGGGTTGCGGCAGCAAGATCGATAGCACGTAGAGGGGG
128 TCCCAGTCTAAGATCGGACTGGATC-GAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGG
* * *
15646935 ACCCGACCGATCCCCGACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTC
192 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
*
15647000 CGTGGGTTGACTTAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
257 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * **
15647065 AAGATCGAACCGGACCGCA-GGTTGCAGCAGCACATGCTGGGCTCCAGCATGTGCTGGTGCCTTA
322 AAGATCGGACCGGACCG-AGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCA
* * *
15647129 TTTTTCTTCG-CTGGCGCACCATCGTCGGAGCATCGCCGGAGAACTTGACCGACGGCATTGGAGT
386 TTTTTCTTCGTC-GGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGT
* * * * *
15647193 TCTGATGATCAGGGGGTCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCC
450 TCCGACGATC-GGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCC
*
15647258 TTATATTGGCCCCCTATCCCTCATCAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
514 TTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
*
15647323 TTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
579 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* *
15647388 ACAAAATCTTGTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGG
644 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* * *
15647453 ATCACGTCTCCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAATCCGAAACCGCA
709 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCA
** * *
15647518 AAAAGTTTTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGC
774 AAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGC
* *
15647583 TTAAGGGACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCACGTAGAAATATGAAG
839 TTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
* * * * ** *
15647646 ATGTGCCTAAACCCACCTACCGCCCTATCAATCCTCGGCTTACGCAT-CCGTCTCTCCAGCCGGC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* ** * *
15647710 ATAGTGCCCGCCCGTCCGCCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
66 GTAGTGCCCGCCCG-CCGCCATCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * ** * * * ** * *
15647775 CCAGTCAAAGATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGGTAGCATGCAAAGGGGGACC
130 CCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACC
* * * * * *
15647840 CGATCGATCCCCGGCTTACGCATCCTGCCCCTCCGGCCGACTGAGCGCCCACACGCTCGTTTCGT
195 CGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGT
** * *
15647905 GGGTTGACTTAGGCATACAAAATTCATTCCCGGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
260 GGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * * *
15647970 ATCGGATAGGATCGAGGGTTGCGACAGCACATCCTAGGCTCGGGCATGTGCTAGTGCCGTATTTT
325 ATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTT
* * * *
15648035 TCTTCGTCGGGGCACCA---TC---G--T---CGGAGAACTTGACTGGCGGCATTGGGGTTCCGG
390 TCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGA
*
15648089 CGATCGAGGGGGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTT
455 CGATC--GGGGGGCC-GGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTT
* * *
15648154 ATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGCGCATTTGAGATT
516 ATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATT
15648218 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCAC
581 TTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCAC
* *
15648282 AAAATCTTGTACACTTCCAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
646 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
* *
15648347 CACGTCTA--ATAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTATAAAAAATCCCAAACCGCAA
711 CACGTCTACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAA
* * *
15648410 AAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCATTTTGCCATGAAACTTCACGTGAAGGCT
775 AAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCT
* * *
15648475 TAAAGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAG
840 TAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
* * * * * *
15648537 ATGTGCCTAAAACCACCTACTACCCTATCGATCAACCGCTTGCGCCTCCCGTCTCTCTGGCCGGC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * ** * *
15648602 GCAGTGCCCGCCCGTCCGCCCTTTCGCTCTTTTCGTCGGTCT-GCTTAGGCATATGGAGTTCATT
66 GTAGTGCCCGCCCG-CCGCCATCCCGCTCGTTTCGTCGGT-TGGCTTAGGCATACGGAGTTCATT
** * * * * * *
15648666 CCCAGTCTAAGATTAGACTAGACCGAGGGTTGTGGTAGC-GAGATC-AGTAGCATGCAGAGGGGG
129 CCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAG-GATCGA-CAGCACGCAGAGGGGG
** * * * * *
15648729 ACCCGACCGATCCCTAGCTTACGCATCCCGCCCCTCTGGCCGGCTCAGCGCCCGTATGCTTGTTT
192 ACCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTT
* * *
15648794 CGTGGGTTGACTTAGGCATACGGAGTTCATTCACAGTCTAAGCGTACGAAGTTCATTCCCAGTCT
257 CGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * *
15648859 AAGATCGGACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCAT
322 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCAT
** * * * * * *
15648924 TTTTCTTCACCGAGGCACCATCGTTGGAGCATCTCCGGAGAACCTAACCGTCAGCATTGGGGTTC
387 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
*
15648989 CGACGATC-GGGGGCCGGGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTA
452 CGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTA
* *
15649053 TATTGGCTCGCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTT
517 TATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTT
* *
15649117 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTTGAAATGGTCAC
582 TACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCAC
*
15649182 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA-AAAAATACAAGGAT
646 AAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGAT
** *
15649246 CACGTCTACCAAGTTTGGGGGTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAGA
711 CACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAA
* * * * *
15649311 AAGTTTCGAAAATCGTGAAAAATAGAAAACGAGTCGTATTGGCATGAAACTTCACGTGAAGTCTT
776 AAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTT
* ** *
15649376 AAGGGACCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGTAATATGAAG
841 AAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
* * *
15649437 ATGTACCTAAACCCACCAACCACCCTATCGATCCACGGCTCGCGCATCCCGTCTCTCTGGCCGAC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * *
15649502 GTAGTGCCCGCCCGCCCGCCA----GCTCGTTTCGTCAGTTCGCTTAGGCATACGAAGTTCATTC
66 GTAGTGCCCGCCCG-CCGCCATCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * *
15649563 CCGGTCTAAGATTGGA-TCGGACCGAGGGTTGTGGCAGTAGGATC-AGCAGCATGCAGAGGGGGA
130 CCAGTCTAAGATCGGACT-GGATCGAGGGTTGCGGCAGCAGGATCGA-CAGCACGCAGAGGGGGA
*
15649626 CTCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
193 CCCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
* * * *
15649691 GTTGGTTCACTTAGGCATACGGAGTTCATTCCCAGTCTAAGGATACGGAGTTCATTCCCAATCTA
258 GTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTA
* *
15649756 AGATCGGACTGGACCGAGGGTTGCGGCAGCACATGCTAGGCT-GAAGCATGTGCTGGTGCCGCAT
323 AGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG-AGCATGTGCTGGTGCCGCAT
* ** * *
15649820 TTTTCTTCGCCGGTACACCATCGTCAGATCATCGCCGGAGAACCTGACC-AGCGGCATTGGGGTT
387 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGA-CGGCATTGGGGTT
* *
15649884 CCGGCGATCGGGGGGGCCGAGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGC
451 CCGACGATC-GGGGGGCC---GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGC
* **
15649949 CCTTATATTGG-CCCCTATCCCTCATCAAACCCTGAGAACTCACACAACCTTAAAGAGCATTTGA
512 CCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGA
15650013 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
577 GATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGG
* *
15650078 TCACAAAATCTTGTACACTTCGAGTTGTTAGCTGAATTTTTTTGTGCATGCCAACAGAAAA-GCA
642 TCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACA
* * **
15650142 AGGATCACGTCTACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAAATTTAAAAAATCCTGAACC
706 AGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACC
* *
15650207 ACAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
771 GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAA
* *
15650272 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGAA
836 GGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAA
15650337 G
901 G
* *
15650338 ATGTGCCTAAACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCCAC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* ** * * ** *
15650403 GTAGTGCCCGCCCTCCTGCCCGCCCGCTTGTTTCATCGAATGGCTTAGGCATACGTAGTTCATTC
66 GTAGTGCCCGCCCGCC-GCCATCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * ** * *
15650468 CCAGTCTAAGATTGGA-TCAGACCGAGGGATGTGGCAGCAGGATTGGTAGCACACAGAGGGGGGC
130 CCAGTCTAAGATCGGACT-GGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGAC
* ** *
15650532 CC-AGCCGATCCCCGGCTTGCGCAT-CCACCCCTCTGGCTAGCTGAGCGCCCGTACGCTCGTTTC
194 CCGA-CCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTC
** * **
15650595 GTGGGTTGACTTAGGCATACAAAGTTCATAT-CCAGCCTAAGCATACAAAGTTCATTCCCAGTCT
258 GTGGGTTGACTTAGGCATACGGAGTTCAT-TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCT
* * * * *
15650659 AAGATCGGACTGGACCGAGGGTTGCGGCAGCACCTACTGGGCTCGGGCATGTGCTGGTGCCCCAT
322 AAGATCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCAT
* **
15650724 TTTTCTTCATCGGGGCACCA---T-----CA---CCGGAGAACCTGACCGGTGGCATTGGGGTTC
387 TTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTC
* * * *
15650778 CGACGATCGTGGTGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGG-CTT
452 CGACGATCG-GGGGGC-CGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCT
* * * *
15650842 TATATTGGCCCCTTATTCCTC-TGTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
515 TATATTGGCCCCCTATCCCTCAT-CAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGA
* * * *
15650906 TTTTACAGGTTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAACGATC
579 TTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTC
* * *
15650971 ACAAAATCTTGTACACTTCGAGTTTTTAGCTAAACTTTTTTGGGCATGCCAACAAAAATACAAGG
644 ACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGG
* **
15651036 ATCACGTCTACCAAGTTTGGGGACAAAACTCCTTTTGAAAAAATTTTAAAAAATCTCC-AACCGC
709 ATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CCAAACCGC
* *
15651100 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATTAAACTTCACGTGAAGG
773 AAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGG
* *
15651165 CTTAAGAGACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
838 CTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
15651229 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
1 ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
* * * ** * *
15651294 ATAGTGCTCGCCCGCCCACCCGCCCGCTCGTTCCGTCAGTTGGCTTAGGCATACGGAGTTCATTC
66 GTAGTGCCCGCCCG-CCGCCATCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
* * * * * * *
15651359 CCAGTCTAAGATCGGACCGGACCGAGGGTTGTGGCTGCAGGATCGATATCACACAGAGAGGGG-C
130 CCAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAG-GGGGAC
* * * ** * * * * *
15651423 CCGGCTGATCTCTAGTTTACGCAT-CCG-CCCTCTGGCCGACTGAGCGCCTGCACGCTCATTTCG
194 CCGACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCG
*
15651486 TGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCT
259 TGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCT
15651523 GAAATTGTCC
Statistics
Matches: 10356, Mismatches: 1366, Indels: 684
0.83 0.11 0.06
Matches are distributed among these distances:
867 52 0.01
868 430 0.04
869 127 0.01
870 1 0.00
871 2 0.00
872 3 0.00
873 2 0.00
875 1 0.00
876 154 0.01
877 1 0.00
878 1 0.00
882 2 0.00
884 1 0.00
885 1 0.00
886 1 0.00
887 1 0.00
889 3 0.00
890 81 0.01
891 1106 0.11
892 463 0.04
893 117 0.01
894 156 0.02
895 370 0.04
896 550 0.05
897 360 0.03
898 706 0.07
899 35 0.00
900 406 0.04
901 656 0.06
902 1244 0.12
903 1611 0.16
904 436 0.04
905 329 0.03
906 6 0.00
907 6 0.00
908 8 0.00
909 78 0.01
910 1 0.00
911 1 0.00
912 4 0.00
913 1 0.00
914 3 0.00
915 9 0.00
916 8 0.00
917 11 0.00
918 8 0.00
919 2 0.00
922 3 0.00
923 6 0.00
924 2 0.00
925 7 0.00
926 3 0.00
927 5 0.00
928 1 0.00
929 3 0.00
930 1 0.00
931 3 0.00
934 3 0.00
935 5 0.00
937 5 0.00
938 7 0.00
939 4 0.00
940 4 0.00
941 1 0.00
942 3 0.00
943 1 0.00
944 2 0.00
945 6 0.00
946 8 0.00
947 6 0.00
948 9 0.00
950 2 0.00
952 9 0.00
953 8 0.00
954 8 0.00
955 6 0.00
956 2 0.00
957 1 0.00
958 4 0.00
960 2 0.00
961 1 0.00
963 2 0.00
964 2 0.00
965 6 0.00
966 3 0.00
967 1 0.00
969 2 0.00
970 5 0.00
971 4 0.00
973 2 0.00
975 5 0.00
977 1 0.00
978 2 0.00
979 1 0.00
980 1 0.00
981 6 0.00
982 4 0.00
983 1 0.00
984 1 0.00
985 4 0.00
988 2 0.00
990 10 0.00
991 10 0.00
992 13 0.00
993 1 0.00
994 2 0.00
995 5 0.00
997 1 0.00
998 2 0.00
999 3 0.00
1000 9 0.00
1001 6 0.00
1002 8 0.00
1003 1 0.00
1004 152 0.01
1005 1 0.00
1008 3 0.00
1010 2 0.00
1011 10 0.00
1012 7 0.00
1013 7 0.00
1014 11 0.00
1015 330 0.03
1016 11 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
ATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGAC
GTAGTGCCCGCCCGCCGCCATCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCC
CAGTCTAAGATCGGACTGGATCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC
GACCGATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTG
GGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGA
TCGGACCGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGAGCATGTGCTGGTGCCGCATTTTT
CTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGAC
GATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
GGCCCCCTATCCCTCATCAAACCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTT
TCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAG
Found at i:15642470 original size:26 final size:26
Alignment explanation
Indices: 15642440--15642492 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15642430 GTTGACTTTG
*
15642440 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
15642466 GCATACGGAGTACATTCCCAGTCTAA
1 GCATACGGAGTACATTCCCAGTCTAA
15642492 G
1 G
15642493 ATTGAACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.21, T:0.25
Consensus pattern (26 bp):
GCATACGGAGTACATTCCCAGTCTAA
Found at i:15643474 original size:26 final size:26
Alignment explanation
Indices: 15643444--15643496 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15643434 GTTGACTTAG
**
15643444 GCATACGGAGTTCATTCCTGGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15643470 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15643496 G
1 G
15643497 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.23, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15644385 original size:26 final size:26
Alignment explanation
Indices: 15644349--15644400 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
15644339 TGACTTAGGC
15644349 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
15644375 ATACGGAGTTCATTCCCAGTCTAAGA
1 ATACGGAGTTCATTCCCAGTCTAAGA
15644401 TCAGATCGGA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAGTCTAAGA
Found at i:15644739 original size:904 final size:901
Alignment explanation
Indices: 15642986--15651522 Score: 10986
Period size: 891 Copynumber: 9.5 Consensus size: 901
15642976 CATGCGAAAA
* * *
15642986 TACCAAGTTTGGGGCCAAAACTCCTTCAGAAAAAATTTAAAAAAATCCCGAACCGTAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* * * * *
15643051 CCAAAATCTTGAAAAATAAAAAACGAGTCGTCTCGCCATGAAACTTCACGTGAAGGCTCAAGGGA
66 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
15643116 CCATTGTTTGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAA
131 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
* * * * * * *
15643181 ACCCACCTACCACCCTATCGATCGACGACTTGCGCATCCCGTCCCTTTGGCTGGCATAGTGCCTG
196 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCG
* * * *
15643246 CCTGCCCGCCCGCCCGCTCATTTCATCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
261 CCCGTCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * ** * * * * *****
15643311 A-TCAGACTAGATCGAGGGTTACGGCAGTAGGATTGGTAGCACGCAGTGGGGGACTCGGTTTTTT
325 ATTGA-ACT-GACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGAC-CCGACCGAT
* * * * * * *
15643375 CCCCGGCTTGTGCATCCCGTCCCTCTGGCCAGCTGAGCGCCCACACACTTGTTTCATGGGTTGAC
387 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGAC
** *
15643440 TTAGGCATACGGAGTTCATTCCTGGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATC
452 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C
* * * *
15643505 GGACCGAGGGTTGCGGCAGCACATGCTGTGCTCAGGCATGTGCTGGTGCCACATTTTTCTTCATC
516 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * *
15643570 GGGGCACCATCGCCGGAGTATCACCGGAGAACCCGACCGGCGGCAATGGGGTTCCGGCGATCGAG
581 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
* * * *
15643635 GGGGTC-GGGGGGTGTGCGTACATGATGTGTGATGGGTGCTGGTACTTGGCTCTTATATTGGCCC
646 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* *
15643699 CCTATCCCTCATCAAACCTTGAGAACTCACACCCCTTTAAAGAGCATTTGAGATTTTACAGGTTT
711 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * * *
15643764 GCTGCCAGTAACTATTAAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGA
776 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* *** * *
15643829 ACACTTCGAGTTTTTGGCTGAATTTTTTTGTGCACAACAACAAAAACACAAGGATCATGTC
841 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * *
15643890 TACCAAGTTCGAGGCAAAAACTCCTTCC-AAAAGCATTTTAAAAAATCCCGAACCAG-AAAAAGT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCCCGAACC-GCAAAAAGT
* * *
15643953 TTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACATCATGTGAAGGCTTAAGG
64 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
15644018 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAGAAATATGAAGATGTGGCT
129 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
* * * * *
15644083 AAACCCACCAACCAGCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGTCGACGTAGTGCC
194 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCC
** * *
15644148 CGCCCGTTTGCCCGTCCGCTCGTTTCGTCAGTTGGCTTAGGCATACGAAGTTCATTCCCAGTCTA
259 CGCCCGTCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * ** * * *
15644213 AGATTGAACTGCAATGAAGGTTGCAGTAGCAGGATCGGCAGCACGTAGAGGGGGACCCGACCGAT
323 AGATTGAACTG-ACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGAT
* * * * * *
15644278 CCCCAGCTTGCGTATCCCGCCCCTCTGGCCTGCTGAGCGCCCTCACGTTCATTCCGTGGGTTGAC
387 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGAC
* *
15644343 TTAGGCATACGGAGTTCATTCCCAGTCTAAGAATACGGAGTTCATTCCCAGTCTAAGATCAGATC
452 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-C
* * * * **
15644408 GGACCGCGGGTTGTGGCAGCACATGCTGGGCACGGGCATGTGCTGGTGCTGCATTTTTCTTCACC
516 GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * *
15644473 GGGGCACCATCGCCGGAGCATCGCTGGGGAACCTGACCGGTGGAATTGGGGTTCCGACGATCGGG
581 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
*
15644538 GGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
646 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
15644603 CCTATCCCTTATCAAACCTCGAGAACTAACTCCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
711 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
15644668 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
776 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
*
15644733 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCAGGTC
841 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* ** *
15644794 TACCAAGTTTGGGGCCAAAACTCCCTT-TGAAAAAATTTTAAAAAAATCTGGAACCGCAAAAGGT
1 TACCAAGTTTGGGGCCAAAACT-CCTTCCGAAAAAATTTT-AAAAAATCCCGAACCGCAAAAAGT
* * * *
15644858 TTCATAAATCGTGAAAAATAGAAAACAAGTCGTCTTGCCATGAAACTTCATGTGAAGGCTGAAGG
64 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* * * *
15644923 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGGAGAAATATGAAGATATACCT
129 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCT
* * **
15644988 AAACCCACCTACCATCCTATCGATCCACGGCTTACGCATCCCGTCTCTCTGGCCGATGTAGTGCC
194 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCC
* * * *
15645053 CG--C--CCG--C-CCGCTCGTTTTGTTGGTTGGTTTAGGCATACGGAGTTCATTCCCAGTCTAT
259 CGCCCGTCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * *
15645111 GA-TCAGACTGGATCGAGGGTTATGGTAGTAGGATCGGCAGCACACAGAGGAGGACCCGACCGAT
324 GATTGA-ACT-GACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGAT
** * * * * * * * *
15645175 CCCTAGCTTACGCATCCTGACCCTCTGGCCGGCTGAGCACCCACATGCTCATTTCGTGGCTTGAC
387 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGAC
* * * * *
15645240 TTAGGCATATGGCGTTCATTCCAAGTCTAAGCATACAGG-GTTCACTCCCAGTCTAAGATCGAAC
452 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATAC-GGAGTTCATTCCCAGTCTAAGATCGGA-
* * * * * * *
15645304 CGGACCGAGGGTTAC-ACTAGCACTTGCAGGGCTCGAGCATGTGTTGGTGCCGTATTTTTCTTCG
515 CGGACCGAGGGTTGCGGC-AGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
*** * * * ** * *
15645368 TCGGGGCACCATAACCGGAGCTTCACCGAAGATCCTGACCGGTTGCTTTGGGGTTTCGACGATCG
579 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* *
15645433 GAGGGGCCGGGTGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT-GC
644 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* *
15645497 CTCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
709 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
15645562 TTGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
774 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
15645627 GTACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
839 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
15645690 TCCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAAT-CCGAAACCGCAAAAAGTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG-AACCGCAAAAAGTT
** *
15645754 TTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
65 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
15645819 ACCATTTTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
130 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
*** * * * *
15645884 AACCCACCTACTGTCCTATCGATCCACAGCTTGTGCATCCTGTCTCTCTGG-CTAGCATAGTGCC
195 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGA-CATAGTGCC
* * *
15645948 CG--C--CCG--C-CAGCTCGTTTCGTCGATTGGCTTAGGCATAGGGAGTTCATTCCCAGTCTAA
259 CGCCCGTCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * ** * * * ** * * *
15646006 GATCAGACCAGACTGAGGGATGCAGCAGCCGGATTGGCAGCACATAGAGTGGGACTCGATCGATC
324 GAT-TGAACTGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATC
*
15646071 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGT-ACGCTCGTTTCATGGGTTGAC
388 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC-TCACGCTCGTTTCGTGGGTTGAC
*
15646135 TTAGGCATATGGAGTTCATTCCCAG--T---C-TA---AG---------A-TC--AGA-C---CG
452 TTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACG
** ** ** * ** *
15646175 GACCGAGGGTTATGATAGCACATATTGGGCTCAGGCATGTG-TCGGTGCCATATTTTTCTTTGTC
517 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCT-GGTGCCGCATTTTTCTTCGTC
* * * * * **
15646239 GGGGCACCATCATCGGAGCATCACCGGAGAACCTGACCGACGACATTGAGGTTTCGGTGATC-GG
581 GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGG
*
15646303 GGGGCC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCT
646 GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCC
* * *
15646367 CTTATCCCTCATCAAACCTTGAGAATTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
711 CCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTT
* * *
15646432 GCTGCCAGTAGCTATTAAAGTGTCTGAAATGGGGACACCTTTTTCAAATGCTCACAAAATCTTGT
776 GCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGT
* ** *
15646497 ACACTTCGAGTTTTTAGTTGAAGATTTTTGTGAATGCCAACAAAAATACAAGGATCACGTC
841 ACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * **
15646558 TACCAAGTTTGGGGCCAACACTCATTCCGAAAAAATTTTAAAAAATCCTGAACCATAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
** *
15646623 TGAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCGTGAAACTTCACGTGAAGGCTTAAGGGA
66 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
15646688 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
131 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
* *
15646753 ACCCACCTACCGCCCTATCGATCCACGG-TTGGCGCATTCCGTCTCTCTGGCCGACATAGTGCCC
196 ACCCACCTACCACCCTATCGATCCACGGCTT-GCGCATCCCGTCTCTCTGGCCGACATAGTGCCC
* * * * *
15646817 GCCTGCCCGCCCGTTCGCTCGTTTCATCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAA
260 GCCCGTCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
15646882 GATAGGACTGGACTGAGGGTTGCGGCAGCAAGATCGATAGCACGTAGAGGGGGACCCGACCGATC
324 GATTGAACT-GACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATC
* * * *
15646947 CCCGACTTGCGCATCCCGCCCCTTTGGCCGGCTGAGCGCCCGCACGCTCGTTCCGTGGGTTGACT
388 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGACT
* *
15647012 TAGGCATACGGAGTTTATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGAACCG
453 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CG
* ** **
15647077 GACCGCA-GGTTGCAGCAGCACATGCTGGGCTCCAGCATGTGCTGGTGCCTTATTTTTCTTCG-C
517 GACCG-AGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTC
* * * * * * * *
15647140 TGGCGCACCATCGTCGGAGCATCGCCGGAGAACTTGACCGACGGCATTGGAGTTCTGATGATC-A
581 -GGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGG
* *
15647204 GGGGGTCGGGGGGGTGTGCGCACATGATGTACGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
645 GGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
* *
15647269 CCCTATCCCTCATCAATCCTTGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
710 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
*
15647334 TGCTACCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
775 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
15647399 TACACTTCCAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAAGGATCACGTC
840 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* *
15647461 TCCCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTAAAAAAAT-CCGAAACCGCAAAAAGTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCG-AACCGCAAAAAGTT
** *
15647525 TTGAAAATCGTGAAAAATAGAAAACGAGTCATCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
65 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
15647590 ACCATTGTATGAATTTACAAGCCAGAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
130 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
* * * * ** *
15647655 AACCCACCTACCGCCCTATCAATCCTCGGCTTACGCAT-CCGTCTCTCCAGCCGGCATAGTGCCC
195 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCC
* *
15647719 GCCCGTCCGCCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCAAA
260 GCCCGTCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * *
15647784 GATCAGACCAGACCGAGGGTTGTGGCAGCAAGATCGGTAGCATGCAAAGGGGGACCCGATCGATC
324 GAT-TGAACTGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATC
* * * * *
15647849 CCCGGCTTACGCATCCTGCCCCTCCGGCCGACTGAGCGCCCACACGCTCGTTTCGTGGGTTGACT
388 CCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGACT
** * * *
15647914 TAGGCATACAAAATTCATTCCCGGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGATAG
453 TAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA-CG
* * * * * *
15647979 GATCGAGGGTTGCGACAGCACATCCTAGGCTCGGGCATGTGCTAGTGCCGTATTTTTCTTCGTCG
517 GACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
* * *
15648044 GGGCACCA---TC---G--T---CGGAGAACTTGACTGGCGGCATTGGGGTTCCGGCGATCGAGG
582 GGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG-GG
* *
15648098 GGGGCCGGGGGGTGTGTGCGCACATGATGTGCGATGGGTGTTGGTACTTGGCCCTTATATTAGCC
646 GGGGCCGGGGGG-GTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
*
15648163 CCCTATCCCTCATCAAACCTCGAGAACTCACA-CCCCTTAAAGCGCATTTGAGATTTTACAGGTT
710 CCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTT
15648227 TGCTGCCAGTAGCCATTAAAGTGTCTGAAAT-GGGACACTTTTTTCAAATGGTCACAAAATCTTG
775 TGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTG
* *
15648291 TACACTTCCAGTTTTTAGCTAAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
840 TACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * *
15648353 TA--ATAGTTTGGGGCCAAAACTCCTTCCAAAAAAATTATAAAAAATCCCAAACCGCAAAAAGTT
1 TACCA-AGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTT
* * * * *
15648416 TCAAAAATCATGAAAAATAGAAAACAAGTCATTTTGCCATGAAACTTCACGTGAAGGCTTAAAGG
65 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* *
15648481 ACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCACGTAGAAATATGAAGATGTGCCTA
130 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
* * * * * * **
15648546 AAACCACCTACTACCCTATCGATCAACCGCTTGCGCCTCCCGTCTCTCTGGCCGGCGCAGTGCCC
195 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCC
** * *
15648611 GCCCGTCCGCCCTTTCGCTCTTTTCGTCGGTCT-GCTTAGGCATATGGAGTTCATTCCCAGTCTA
260 GCCCGTCCGCCC-GCCGCTCGTTTCGTCGGT-TGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
* * *
15648675 AGATT-AGACTAGACCGAGGGTTGTGGTAGC-GAGATCAGTAGCATGCAGAGGGGGACCCGACCG
323 AGATTGA-ACT-GACCGAGGGTTGTGGCAGCAG-GATCGGTAGCACGCAGAGGGGGACCCGACCG
** * * * *
15648738 ATCCCTAGCTTACGCATCCCGCCCCTCTGGCCGGCTCAGCGCCCGT-ATGCTTGTTTCGTGGGTT
385 ATCCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC-TCACGCTCGTTTCGTGGGTT
* * *
15648802 GACTTAGGCATACGGAGTTCATTCACAGTCTAAGCGTACGAAGTTCATTCCCAGTCTAAGATCGG
449 GACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGG
* * *
15648867 ACCGGACCGAGGGTTGTGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCTGCATTTTTCTTC
514 A-CGGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * * * * * *
15648932 ACCGAGGCACCATCGTTGGAGCATCTCCGGAGAACCTAACCGTCAGCATTGGGGTTCCGACGATC
578 GTCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
*
15648997 --GGGGGCC-GGGGGGTGTGCGCACATGATGTGCTATGGGTGCTGGTACTTGGCCCTTATATTGG
643 GGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGG
* * *
15649059 CTCGCTATCCCTCATCAAACCTTGAGAACTCACA-CCCCTTAAAGAGCATTTGAGATTTTACAGG
708 CCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* *
15649123 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACGCTTTTTTTGAAATGGTCACAAAATC
773 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC-TTTTTTCAAATGGTCACAAAATC
*
15649188 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGCCAA-AAAAATACAAGGATCACGTC
837 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
** * *
15649252 TACCAAGTTTGGGGGTAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCAAACCGCAGAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* * * *
15649317 CGAAAATCGTGAAAAATAGAAAACGAGTCGTATTGGCATGAAACTTCACGTGAAGTCTTAAGGGA
66 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* ** * *
15649382 CCAATGTATGAATTTACAAGCCATAAAAATGGCATTGGCATACAGTAATATGAAGATGTACCTAA
131 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
* * *
15649447 ACCCACCAACCACCCTATCGATCCACGGCTCGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
196 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCG
* * * *
15649512 --C--CCGCCCGCCAGCTCGTTTCGTCAGTTCGCTTAGGCATACGAAGTTCATTCCCGGTCTAAG
261 CCCGTCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * * * *
15649573 ATTGGATCGGACCGAGGGTTGTGGCAGTAGGATCAGCAGCATGCAGAGGGGGACTCGACCGATCC
325 ATT-GAACTGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCC
* * *
15649638 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCGCACGCTCGTTTCGTTGGTTCACTT
389 CCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGACTT
* *
15649703 AGGCATACGGAGTTCATTCCCAGTCTAAGGATACGGAGTTCATTCCCAATCTAAGATCGGACTGG
454 AGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGAC-GG
* * *
15649768 ACCGAGGGTTGCGGCAGCACATGCTAGGCT-GAAGCATGTGCTGGTGCCGCATTTTTCTTCGCCG
518 ACCGAGGGTTGCGGCAGCACATGCTGGGCTCG-GGCATGTGCTGGTGCCGCATTTTTCTTCGTCG
** * * * * *
15649832 GTACACCATCGTCAGATCATCGCCGGAGAACCTGACCAGCGGCATTGGGGTTCCGGCGATCGGGG
582 GGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGG
*
15649897 GGGCCGAGGGGGGGTGTGCGCACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGG-C
647 GGGCC--GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCC
**
15649961 CCCTATCCCTCATCAAACC-CTGAGAACTCACACAACCTTAAAGAGCATTTGAGATTTTACAGGT
710 CCCTATCCCTCATCAAACCTC-GAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
15650025 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
774 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* *
15650090 GTACACTTCGAGTTGTTAGCTGAATTTTTTTGTGCATGCCAACAGAAAA-GCAAGGATCACGTC
839 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACA-AAAATACAAGGATCACGTC
* * * *
15650153 TACCAAGTTTGGGACCAAAACTCCTTCCGAAAAAAATTTAAAAAATCCTGAACCACAAAAAGTTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
* *
15650218 TAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
66 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
15650283 CCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGAAGATGTGCCTAA
131 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
* * *
15650348 ACCCACCTACCACCCTATCGATCCAAGGCTTGCGCATCCCGTCTCTCTGGCCCACGTAGTGCCCG
196 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCG
* * ** *
15650413 CCC-TCCTGCCCGCCCGCTTGTTTCATCGAATGGCTTAGGCATACGTAGTTCATTCCCAGTCTAA
261 CCCGTCC-GCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * *
15650477 GATTGGATCAGACCGAGGGATGTGGCAGCAGGATTGGTAGCACACAGAGGGGGGCCC-AGCCGAT
324 GATT-GAACTGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGA-CCGAT
* **
15650541 CCCCGGCTTGCGCAT-CCACCCCTCTGGCTAGCTGAGCGCCCGT-ACGCTCGTTTCGTGGGTTGA
387 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCC-TCACGCTCGTTTCGTGGGTTGA
** * **
15650604 CTTAGGCATACAAAGTTCATAT-CCAGCCTAAGCATACAAAGTTCATTCCCAGTCTAAGATCGGA
451 CTTAGGCATACGGAGTTCAT-TCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
* * * *
15650668 CTGGACCGAGGGTTGCGGCAGCACCTACTGGGCTCGGGCATGTGCTGGTGCCCCATTTTTCTTCA
515 C-GGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
*
15650733 TCGGGG---CA----C----CATCACCGGAGAACCTGACCGGTGGCATTGGGGTTCCGACGATCG
579 TCGGGGCACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * * * *
15650787 TGGTGGCTGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCCGGTACTTGG-CTTTATATTGGC
644 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
15650851 CCCTTATTCCTC-TGTAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
709 CCCCTATCCCTCAT-CAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGG
* * * *
15650915 TTTCCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACATTTTTTTCAAACGATCACAAAATCT
773 TTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCT
* * *
15650980 TGTACACTTCGAGTTTTTAGCTAAACTTTTTTGGGCATGCCAACAAAAATACAAGGATCACGTC
838 TGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* **
15651044 TACCAAGTTTGGGGACAAAACTCCTTTTGAAAAAATTTTAAAAAATCTCC-AACCGCAAAAAGTT
1 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATC-CCGAACCGCAAAAAGTT
* * * *
15651108 TCAAAAATCATGAAAAATAGAAAACGAGCCGTCTTGCCATTAAACTTCACGTGAAGGCTTAAGAG
65 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
*
15651173 ACCATTGTATGAATTCACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
130 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTA
*
15651238 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCTC
195 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCC
* * * *
15651303 GCCCGCCCACCCGCCCGCTCGTTCCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
260 GCCCGTCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAA
* * * * * * * * *
15651368 GATCGGACCGGACCGAGGGTTGTGGCTGCAGGATCGATATCACACAGAGAGGGG-CCCGGCTGAT
324 GAT-TGAACTGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAG-GGGGACCCGACCGAT
* ** * * * *
15651432 CTCTAGTTTACGCAT-CCG-CCCTCTGGCCGACTGAGCG-CCTGCACGCTCATTTCGTGGGTTGA
387 CCCCGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCT-CACGCTCGTTTCGTGGGTTGA
*
15651494 CTTAGGCATATGGAGTTCATTCCCAGTCT
451 CTTAGGCATACGGAGTTCATTCCCAGTCT
15651523 GAAATTGTCC
Statistics
Matches: 6716, Mismatches: 780, Indels: 288
0.86 0.10 0.04
Matches are distributed among these distances:
867 54 0.01
868 423 0.06
869 105 0.02
870 1 0.00
872 3 0.00
873 1 0.00
874 4 0.00
875 3 0.00
876 175 0.03
877 1 0.00
878 1 0.00
881 1 0.00
882 2 0.00
885 2 0.00
886 1 0.00
888 1 0.00
889 5 0.00
890 76 0.01
891 799 0.12
892 409 0.06
893 121 0.02
894 84 0.01
895 369 0.05
896 542 0.08
897 367 0.05
898 154 0.02
899 36 0.01
900 390 0.06
901 379 0.06
902 417 0.06
903 724 0.11
904 738 0.11
905 326 0.05
906 2 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (901 bp):
TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAACCGCAAAAAGTTT
CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTAGAAATATGAAGATGTGCCTAA
ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGACATAGTGCCCG
CCCGTCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
TTGAACTGACCGAGGGTTGTGGCAGCAGGATCGGTAGCACGCAGAGGGGGACCCGACCGATCCCC
GGCTTGCGCATCCCGCCCCTCTGGCCGGCTGAGCGCCCTCACGCTCGTTTCGTGGGTTGACTTAG
GCATACGGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAGTCTAAGATCGGACGGACC
GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGC
ACCATCGTCGGAGCATCACCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGC
CGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTAT
CCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGC
CAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACT
TCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
Found at i:15647051 original size:26 final size:26
Alignment explanation
Indices: 15647015--15647067 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15647005 GTTGACTTAG
*
15647015 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15647041 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15647067 G
1 G
15647068 ATCGAACCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15648848 original size:26 final size:26
Alignment explanation
Indices: 15648812--15648861 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
15648802 GACTTAGGCA
*
15648812 TACGGAGTTCATTCACAGTCTAAGCG
1 TACGAAGTTCATTCACAGTCTAAGCG
*
15648838 TACGAAGTTCATTCCCAGTCTAAG
1 TACGAAGTTCATTCACAGTCTAAG
15648862 ATCGGACCGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (26 bp):
TACGAAGTTCATTCACAGTCTAAGCG
Found at i:15649743 original size:26 final size:26
Alignment explanation
Indices: 15649707--15649757 Score: 93
Period size: 26 Copynumber: 2.0 Consensus size: 26
15649697 TCACTTAGGC
*
15649707 ATACGGAGTTCATTCCCAGTCTAAGG
1 ATACGGAGTTCATTCCCAATCTAAGG
15649733 ATACGGAGTTCATTCCCAATCTAAG
1 ATACGGAGTTCATTCCCAATCTAAG
15649758 ATCGGACTGG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
ATACGGAGTTCATTCCCAATCTAAGG
Found at i:15654896 original size:26 final size:26
Alignment explanation
Indices: 15654862--15654913 Score: 86
Period size: 26 Copynumber: 2.0 Consensus size: 26
15654852 GTTGACTTGG
15654862 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
* *
15654888 GCATCCGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15654914 TATCTGACCA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15654973 original size:14 final size:15
Alignment explanation
Indices: 15654941--15654973 Score: 59
Period size: 15 Copynumber: 2.3 Consensus size: 15
15654931 GGTTACGGCA
15654941 GCATGTGCTGGTGCC
1 GCATGTGCTGGTGCC
15654956 GCATGTGCTGGT-CC
1 GCATGTGCTGGTGCC
15654970 GCAT
1 GCAT
15654974 TTTTCTTCGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 6 0.33
15 12 0.67
ACGTcount: A:0.09, C:0.27, G:0.36, T:0.27
Consensus pattern (15 bp):
GCATGTGCTGGTGCC
Found at i:15655801 original size:26 final size:26
Alignment explanation
Indices: 15655765--15655817 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15655755 GTTGATATAG
*
15655765 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15655791 GCATACCGAGTTCATTCCCAGTCTAA
1 GCATACCGAGTTCATTCCCAGTCTAA
15655817 G
1 G
15655818 ATCAGATCGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACCGAGTTCATTCCCAGTCTAA
Found at i:15658448 original size:26 final size:26
Alignment explanation
Indices: 15658397--15658449 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15658387 GTTGACTTAG
* * *
15658397 GCATATAGAGTTCATTTCCTGACTAA
1 GCATACAGAGTTCATTCCCAGACTAA
*
15658423 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGACTAA
15658449 G
1 G
15658450 ATCAGACCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:15658600 original size:880 final size:881
Alignment explanation
Indices: 15653989--15661676 Score: 9399
Period size: 880 Copynumber: 8.7 Consensus size: 881
15653979 GTTGACTTAG
* ** * *
15653989 GCATACGGAGTTCATTCCCAGTCAAAGATC-GAATGGGACCAAGGGTTGCGGTAGCACATGCTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCGGACCGAGGGTTGCGGCAGCACATGCTGG
* * *
15654053 GCTCGGGCATGTGCTGGTGCCACATTTTTCTTCGTCGAGGCACCATCACCAGATCATCGTCGGAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C-G-GCA---TCGGAG
* * * * *
15654118 AACCTGACCGGCGGCATTGGGGTTCCGGCGATCGGGGGGCC-GGGGG-GTGCACATATGATATGC
122 AACCTGACCGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGC
*
15654181 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTAGAGAACTCACA
187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15654246 CCCCCTTAAAGAGCGTTTGAGATTTTACAGGTTTGCTACCAGTAGCCATTAAAGTGTCTGAAATG
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * *
15654311 GAGACACTTTTTTCAAACGGTCACAAAATCTTGTACACTTCGACTTTTTAGCTGAATTTTTTTGT
317 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* *
15654376 GCATGCCAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAAAAAA
382 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
15654441 TTTTAAAAAATCCCGAACCGCAAAAAAGTTTCGAGAATCGTGAAAAATAGAAAACGAGTCGTCTT
447 TTTTAAAAAATCTCGAACCG-TAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* * *
15654506 GCCATGAAACTTCACGCGAAGGCTTAAGGGACCATTGTTTGGATTTACAAGCCATAAAAATGGCA
511 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * *
15654571 TTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCAACCACACTATCGATCCACGGCTTGCG
576 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACG
* * *
15654636 CATGCCGTCTCTCTGGCCGGTGTACTACCCGCCCGCCCGCCCTCCCGCTCGTTCGTCGGTTGGCT
641 CATCCCGTCTCTCTGGCCGGCGTAGT---CGCCCGCCCG--CT--CG--C-TTCGTCGGTTGGCT
* * * * * * *
15654701 TAGGCATGCGGAGTTCATTCCCAGTCCAAGATCGGATCGGA-TCGAGGGTTGTGGTAGCAGGAT-
696 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCAGCAGGATC
* ** * ** ** * *
15654764 GGCCAGCATTCAGAGGGGGACCCGGTCGATCCTTGGCTTATGAATCCCCCCCTCTGGCCGACTGA
760 AG-CAGCACACAGAGGGGGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGACTGA
** * * * *
15654829 GCGCCCATACGCTTGTTTCGTGGGTTGACTTGGGCATACGGAGTTCATTCCCAGTCTAA
823 GCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
* * * * * * **
15654888 GCATCCGGAGTTCATTCCTAGTCTAATATCTGACCAGACCGAGGGTTACGGCAGCATGTGCTGGT
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGG-
*
15654953 GC-C--GCATGTGCTGGT-CCGCATTTTTCTTCGTCGAGGCACCATCATCGGAGCATCGTCGAAG
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-C--CATC-G-GCATCG--G-AG
* * * *
15655014 AACCTGACC-AGTGGCATTGGGGTTCCGACGATCGAGGGAGCCGAGGGGGGTGTCCACACATGAT
122 AACCTGACCGA-CGGCATTGGGGTTCCGACGATCG-GGGGGCC--GGGGGGTGTGCGCACATGAT
* *
15655078 GTGCGATGGGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATAAAACCTCGAGAACT
183 GTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACT
15655143 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
248 CACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGA
* * *
15655208 AGTGGGGACACTTTTTTCAAATGGTCACAAAATTTTGTACACTTTGAGTTTTTAGCTGAATTTTT
313 AATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTT
* * * *
15655273 TTGTCCATGCCAATAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTCCAAA
378 TTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCC-GA
** * ** * *
15655338 AAAAATTTTAAAAAAT-TCTGAACTATAAAATGTTTTGAAAATCGTGACAAATAAAAAACGAGTC
442 AAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTC
* * * *
15655402 GCCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTTTATGAATTTACAGGCCATGAAAA
506 GTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAA
** * * **
15655467 TGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACCT-CTCAGCCTATTGATCCGTGG
571 TGGCATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTAC-CACCCTATCGATCCACGG
* * * *
15655531 CTTGA-GCATCCCGTCTCTTTGGCCGGTGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCATC
635 CTT-ACGCATCCCGTCTCTCTGGCCGGCGTAGT-----------CGCCCGCCCGCTCGCTTCGTC
* * * ** * *
15655595 GATTGACTTAGGCATACGGAGTTCATTCCCAGTTTAAGATTGGACCCGA-TAGAGGGTTACGGCA
688 GGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACT-GAGGGTTGCGGCA
* * * * * * *
15655659 ACAAGAT-AGGCAGCACATAGAGGGGGACCTGGCCGATCCCTGACTTGTGCATCCCGCCCCTCTG
752 GCAGGATCA-GCAGCACACAGAGGGGGACC-CGCCGATCCCCGGCTTGCGCATCCCG-CCCTCTG
* *
15655723 GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA-TATAGGCATACGGAGTTCATTCCCAGT
814 GCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACT-TAGGCATACAGAGTTCATTCCCTGT
15655787 CTAA
878 CTAA
* * * *
15655791 GCATACCGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGTGCCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
*** * *
15655856 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTTACCGAGGAACCATCGTCGGAGCATTGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCA---TC-G-GCA---TCGGAGA
* * * ** *
15655921 ACCTGACC-AGCGGAATTGGTGTTCCGACAATCGAGGGTTCGAGGGGGGTGTGCGCACATGATGT
123 ACCTGACCGA-CGGCATTGGGGTTCCGACGATCG-GGGGGC-CGGGGGGTGTGCGCACATGATGT
* *
15655985 GCGATGGGTG-TGGTACTTGGCCCCTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAACTCA
185 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCA
* * *
15656049 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCCGCCAATAGCCATTAAAGTGTTTGAAA
250 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
* *
15656114 TAGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTT
315 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
*
15656179 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACGAAAA
380 GTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA
* * * *
15656244 AGTTTTAAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGACAAATAGAAAACGAGTTGTCT
445 AATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCT
*
15656309 TGCCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
510 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
*
15656374 ATTGGCACGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCC--T--ATCCA-----T-C
575 ATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTAC
* * ** *
15656429 G-AT---G--GCT-T-G-C-GC--A-T------CCCG-TC-TTTC-T-GGTCCGCATAGGCATAC
640 GCATCCCGTCTCTCTGGCCGGCGTAGTCGCCCGCCCGCTCGCTTCGTCGGTTGGCTTAGGCATAC
** * * * * * *
15656471 AAAGTTCATTCCCAGCCTAAGATCAGACCAAACTGAGGGTTGAGGCAGCAAGATCGGCAGCACAT
705 GGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACAC
* ** * * ** * *
15656536 AAAGGCAGACCCGACCAATCCCCGACTTGCGCATCCTACCTCTCTGGCCG-GTGGAGCTCCCGCA
770 AGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCC-CTCTGGCCGACT-GAGCGCCCGCA
* * *
15656600 CGCTTGTTTCGTGGTTTGACTTAGGCATACAGAGTTCATT-ACTAGTCTAA
832 CGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCT-GTCTAA
* * * * **
15656650 -CATATGGAGTTCACTCCCAGTGTAAGATCAGACCAGATTGAGGGTTGCGGCAGCACAT-CTTGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGC-TGG
* * * *
15656713 GCTCGGGTATGTGCTGGTGCCACA-TTTTCTCCGTCGGGGCACCATC-GC--CGAAGAACCTGAC
65 GCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGCATCGGAGAACCTGAC
* * *
15656774 CGACGGCATTGGGGTTCCGACGATCGGAGGGCCGGGGGCCTGTGTACGCACATGATGTGTGATGG
130 CGACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGG---GTGTGCGCACATGATGTGCGATGG
* *
15656839 GTGCCGGTACTTGGCCCTTATATTGGCCCCCTATCCCTTATCAAACCTCGAGAACTCACACCCCC
192 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCC
*
15656904 TTAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
257 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
* * *
15656969 ACTTTTTTCAAATGGTCACAAAATCTTGTACATTTGGAGTTTTTAGCTGAAGTTTTTTTATGCAT
322 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTTTGTGCAT
* *
15657034 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTACGAAAAAGTTTT
386 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * *
15657099 AAAAAATCTCGAACCGTAAAAAGTTTTAAAAATCGTGACAAATAGAAAACGAGTTGTCTTGCCAT
451 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* *
15657164 GAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGAC
516 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * *
15657229 ATGCAGAAATATGAAGACT-TGACTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
581 ATGTAGAAATATGAAGA-TGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATC
* * * *
15657293 TCGTCTCTCTGGCCGACGTAGTGCCTGTTCGCCCGCCCGCCCGCTCGTTTCGTCAGTTGGCTTAG
645 CCGTCTCTCTGGCCGGCGTA------G-T----CGCCCGCCCGCTCGCTTCGTCGGTTGGCTTAG
* * * *
15657358 GCATACGGAGTTCATTCCCAGTATAAGAT-TGAACCAGA-TAGAGGGTTGCGGCAGCAAGAT-TG
699 GCATACGGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACT-GAGGGTTGCGGCAGCAGGATCAG
** * * * *
15657420 ACAGCACGTAGAGGGGGACCCGACCGATCCCCGGCTTGTGCATCCCACCTCTCTAGCCGGCTGAG
762 -CAGCACACAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCCGCC-CTCTGGCCGACTGAG
* * * * *
15657485 CTCCCGCACGCTCGTTTCATGGGTTGACTTAGGCATACGGAGTTC-TTTCATAGTCTAA
824 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCT-GTCTAA
* * * * * * *
15657543 GCATATGGAGTTCACTCCCAGTGTAAGATCAAACCAGACTGAGGGTTGCGGCAGCACATCCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* *
15657608 CTGGGGCATGTGCTGGTGCCACA-TTTTCTTCGTCGGGGCACCATC-GC--CGGAGAACCTGACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGCATCGGAGAACCTGACC
* *
15657669 GGCGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGCTGTGTGCGCACATAATGTGCGATGGG
131 GACGGCATTGGGGTTCCGACGATCGGGGGGCC-GGGGG--GTGTGCGCACATGATGTGCGATGGG
*
15657734 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
193 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
*
15657799 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTTTGAAATGGGGACA
258 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
15657864 TTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGAGTTTTTAGCTGAATTTTTTTGTTCATGT
323 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
*
15657929 CAACAAAAATACAAGTATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
388 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
15657994 AAAATCTTGAACCGCAAAAA-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
453 AAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGA
* *
15658058 AACTTCACGTGAAGGCTTAAGGGACCATTGCATGAATTTACAAGCCATAAAAATGCCATTGGCAT
518 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
*
15658123 GGAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCG
583 GTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCG
*
15658188 TCTCTCTGGCCGGCGTAGT-GCCCGCCCGCTCGCTTCGTCGGTTGGCTTAGGTATACGGAGTTCA
648 TCTCTCTGGCCGGCGTAGTCGCCCGCCCGCTCGCTTCGTCGGTTGGCTTAGGCATACGGAGTTCA
* * * *
15658252 TTCCTAGTCTAAGATCAAACTAGACTGAGGGTTGCGGTAGCAGGATCAGCAGCACACAGAGGGGG
713 TTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACACAGAGGGGG
* * * * * *
15658317 ACCCTGTCGATCCCCGGCTTGCGCATTCTGCCCATCTGGCCGACTGAGTGCCCACCCGCTCGTTT
778 ACCC-GCCGATCCCCGGCTTGCGCATCCCGCCC-TCTGGCCGACTGAGCGCCCGCACGCTCGTTT
* * *
15658382 CGTGGGTTGACTTAGGCATATAGAGTTCATTTCCTGACTAA
841 CGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
* * *
15658423 GCATACAGAGTTCATTCCCAGCCTAAGATCAGACCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* **
15658488 CTCGGGCATGTGCTGGTGCCGTATTTTTCTTCGTTTGGGCACCATC-GC-T-GGAGAACCTGACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGCATCGGAGAACCTGACC
* *
15658550 GACGGCATTGGGGTTCCGACGATCCGGGGGGCCGAGAGGGTGTGCGCACATGATGTGCGTTGGGT
131 GACGGCATTGGGGTTCCGACGAT-CGGGGGGCCG-GGGGGTGTGCGCACATGATGTGCGATGGGT
* *
15658615 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGTGAACTCACACCCCCTT
194 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTT
* * *
15658680 GAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTATCTGAAATGGGGACAG
259 AAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACAC
* * * *
15658745 TTTTTTCAAATGGTCACAAAATCTTGTACGCTTCGAGTTTTTAGCTGAATATTTTTGTTCATGTC
324 TTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC
* * *
15658810 AAAAAAAATACAAGTATCTCGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
389 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
* * *
15658875 AAATCTTGAACCGCAAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
454 AAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * * *
15658940 ACTTCACGTGAAGGCTTAAGGAACCCTTGCATGAATTTACAAGCCATAAAAATGCCATTGGTATG
519 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
*
15659005 GAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGT
584 TAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGT
*
15659070 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCTCGCTTCGTCGGTTGGCTTAGGTATACGGAGTT
649 CTCTCTGGCCGGCGTAGT---CGCCCGCCCGCTCGCTTCGTCGGTTGGCTTAGGCATACGGAGTT
* * * *
15659135 CATTCCTAGTCTAAGATCAAACTAGACTGAGGGTTGCGGTAGCAGGATCAGCAGCACACAGAGGG
711 CATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACACAGAGGG
* * * * * * *
15659200 GGACCCTGTCGATCCCCGGCTTGCGCATTCTGCCCGTCTGGCCGAATGAGTGCCCACCCGCTCGT
776 GGACCC-GCCGATCCCCGGCTTGCGCATCCCGCCC-TCTGGCCGACTGAGCGCCCGCACGCTCGT
* * *
15659265 TTTGTGGGTTGACTTAGGCATATAGAGTTCATTCCCTGACTAA
839 TTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
* * * *
15659308 GCATACAGAGTTCATTCCCAGCCTAAGATCAGATCGGACCGAGGGTTGCGACAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
** *
15659373 CTCGGGCATGTGCTGGTGCCATATTTTTCTTCGTTGGGGCACCATC-GC-T-GGAGAACCTGACC
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGCATCGGAGAACCTGACC
*
15659435 GACGGCATTGGGGTTCCGACGATCCGGGGGCCGGGAGGGTGTGCGCACATGATGTGCGATGGGTG
131 GACGGCATTGGGGTTCCGACGATCGGGGGGCCGGG-GGGTGTGCGCACATGATGTGCGATGGGTG
*
15659500 GTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
195 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTA
15659565 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
260 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
* * * *
15659630 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGCGTTTTTAACTAAATTTTTTTATGCATGCCA
325 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
* * ** * * *
15659695 ACAAAAATACAAGGATCACATCTACCAA-TTTTGGTTCAAAACTCTTTTCGAAAAAATTTGAAAA
390 ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
* ** *
15659759 AATCCCGAACCGCGAAAGGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
455 AATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
* * * **
15659824 CTTCACGTGAAGGCTTAAGGGACCGTTGCATGAATTTACAAGCCATAAAAATGGAATTGGCACAT
520 CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGT
* * **
15659889 AGAAATATGAAGATGTGCCTAAACCCAACTACCACCCTATCGATCCACGGCTTTCATATCCCGTC
585 AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTC
* * * * * *
15659954 ACTCTGGCAGGTGTAGT-GTCCGCCCGCTTC-TTTCGTCGGTTGGCTTAGGCATACAGAGTTCAT
650 TCTCTGGCCGGCGTAGTCGCCCGCCCGC-TCGCTTCGTCGGTTGGCTTAGGCATACGGAGTTCAT
* * * * * *
15660017 TCCCAGTCTAAGATCAGACCAGGCCGAGGGCTGTGGCAACAGGATCGGCAGCA-AGCAGAGGGGG
714 TCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACA-CAGAGGGGG
* * * * * * *
15660081 ACCCGGTCGATCCCCGGCTTACGCATCCCACCCCTCTGGCCAACTGAGCACCCGCACACTCATTT
778 ACCC-GCCGATCCCCGGCTTGCGCATCCC-GCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTT
*
15660146 CAT-GG--G--TT--G---AC----TT-A------G-----
841 CGTGGGTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
* *
15660161 GCATACGGAGTTCATTCCCAGTCTAAGATCAGATCGGACCGAGGGTTGCAGCAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * *
15660226 CTCGGGCATGTGCTGGAGCCGTATTTTTCTTCGCCGGGGCACCATCGTTGGAGCATCGCCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATC----G-GCAT---CGGAGA
* * * * *
15660291 ACCTGACCGACGGCATTGGGGTTTCGTCGATCGGGGGGGCGGGCGGGAGGTGTCCGCATATGATG
123 ACCTGACCGACGGCATTGGGGTTCCGACGATC-GGGGGGC---CGGGGGGTGTGCGCACATGATG
* * *
15660356 TGTGATGGGTGCTGGTACTTGGCGCTTATATTGGCCCCCTATCCCTCGTCAAACCTCGAGAACTC
184 TGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTC
* * *
15660421 ACATCCCCTTAAAGAGCATTTGGGATTTTATAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
249 ACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAA
*
15660486 ATGGGGACATTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
314 ATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT
* * * *
15660551 TGTTCATGCCAACAAAAATATAAGGATCACGTCTACCAAGTTT-TGGCCAAAACTCCTTCTGAAA
379 TGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAA
** * * *
15660615 AAATTAAAAAAAAACTCGAACTGTAAAAAGTTTCAAAAATCGTGAAAAATAG-AAACGAGTTGTC
444 AAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTC
* *
15660679 TTGCCATTAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
509 TTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGG
* * *
15660744 CATTGGCATGCAAAAATATGAAGATGTGCGTAAACCCACCTACCACCCTATCGATCCACGGCTTA
574 CATTGGCATGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTA
* * * ** *** *
15660809 CGCATCCCATCTTTCTGGCCGGCGTAGCTCCCGCCCGCCCTCTCATTTTAACGGTTGGCTTATGC
639 CGCATCCCGTCTCTCTGGCCGGCGTAG-T--CGCCCGCCCGCTCGCTTCGTCGGTTGGCTTAGGC
** ** * ** *
15660874 ATACGGAGTTCATTCCCAGTCTAAGATTGGACCAGACCAAGGGTTGTGATAGTAGGATCAGCA-C
701 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCAGCAGC
** * * *
15660938 ACGTAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCGGCCCTCTGGCCGGCTGAGCACCC
766 ACACAGAGGGGGACCCG-CCGATCCCCGGCTTGCGCATCCC-GCCCTCTGGCCGACTGAGCGCCC
* * *
15661003 GCACGCTCATTTCGTGGGTT-AGCTTAGGGATAC-GAAGTTCATTCCCAGTCTAA
829 GCACGCTCGTTTCGTGGGTTGA-CTTAGGCATACAG-AGTTCATTCCCTGTCTAA
* * * * *
15661056 GCATATGGAGTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGG
1 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
* * * **
15661121 CACAGGCACGTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCTGAGCATCGCCAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---C-G-GCATCG---GAGA
*
15661186 ACCTGACCGACGGCATTGGGGTTCCGACGATCGGAGGGGCCGGGGGGTGTGTGCACATGATGTGC
123 ACCTGACCGACGGCATTGGGGTTCCGACGATCGG-GGGGCCGGGGGGTGTGCGCACATGATGTGC
*
15661251 GATGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
187 GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
* *
15661316 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTAAAATG
252 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
* * * *
15661381 GGGACACTTTTTTCAAATCGTCACAAAATCTTGTACACTTCAAGTTATTAGTTGAATTTTTTTGT
317 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGT
* * *
15661446 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCAAAAAAA
382 GCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA
* * * *
15661511 TTTTAAAAAATC-CTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTTGTTTT
447 TTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
* *
15661575 GGCATGAAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
511 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*
15661640 TTGGCACGTAGAAATATGAAGATGTGCCTAAACCCAC
576 TTGGCATGTAGAAATATGAAGATGTGCCTAAACCCAC
15661677 AGGATCGAAG
Statistics
Matches: 6004, Mismatches: 594, Indels: 387
0.86 0.09 0.06
Matches are distributed among these distances:
844 5 0.00
845 3 0.00
846 33 0.01
847 26 0.00
848 166 0.03
849 242 0.04
850 1 0.00
851 3 0.00
853 108 0.02
854 2 0.00
857 15 0.00
858 80 0.01
859 153 0.03
860 6 0.00
861 4 0.00
862 2 0.00
863 5 0.00
864 36 0.01
865 10 0.00
866 150 0.02
867 295 0.05
868 9 0.00
869 71 0.01
870 78 0.01
871 1 0.00
872 1 0.00
874 4 0.00
876 2 0.00
878 3 0.00
879 144 0.02
880 544 0.09
881 256 0.04
882 12 0.00
883 226 0.04
884 244 0.04
885 361 0.06
886 2 0.00
887 2 0.00
889 5 0.00
890 3 0.00
891 5 0.00
892 428 0.07
893 313 0.05
894 454 0.08
895 149 0.02
896 59 0.01
897 19 0.00
898 1 0.00
899 58 0.01
900 9 0.00
901 427 0.07
902 122 0.02
903 287 0.05
904 233 0.04
905 45 0.01
906 64 0.01
907 3 0.00
909 15 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (881 bp):
GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCGGCAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGGCATCGGAGAACCTGACC
GACGGCATTGGGGTTCCGACGATCGGGGGGCCGGGGGGTGTGCGCACATGATGTGCGATGGGTGC
TGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAA
AGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTT
TTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAA
CAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAA
ATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAAC
TTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGTA
GAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTACGCATCCCGTCT
CTCTGGCCGGCGTAGTCGCCCGCCCGCTCGCTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTC
CCAGTCTAAGATCAGACCAGACTGAGGGTTGCGGCAGCAGGATCAGCAGCACACAGAGGGGGACC
CGCCGATCCCCGGCTTGCGCATCCCGCCCTCTGGCCGACTGAGCGCCCGCACGCTCGTTTCGTGG
GTTGACTTAGGCATACAGAGTTCATTCCCTGTCTAA
Found at i:15659333 original size:26 final size:26
Alignment explanation
Indices: 15659282--15659334 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15659272 GTTGACTTAG
* *
15659282 GCATATAGAGTTCATTCCCTGACTAA
1 GCATACAGAGTTCATTCCCAGACTAA
*
15659308 GCATACAGAGTTCATTCCCAGCCTAA
1 GCATACAGAGTTCATTCCCAGACTAA
15659334 G
1 G
15659335 ATCAGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:15662319 original size:21 final size:21
Alignment explanation
Indices: 15662295--15662353 Score: 77
Period size: 21 Copynumber: 2.9 Consensus size: 21
15662285 AAAAATCTCA
15662295 AAAAAATCCTAGAAAAATTTT
1 AAAAAATCCTAGAAAAATTTT
*
15662316 AAAAAATCCCA-AAACAATTTT
1 AAAAAATCCTAGAAA-AATTTT
*
15662337 AAAAAATCAT-GAAAAAT
1 AAAAAATCCTAGAAAAAT
15662354 AGAAAACGAG
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
20 6 0.18
21 27 0.82
ACGTcount: A:0.61, C:0.12, G:0.03, T:0.24
Consensus pattern (21 bp):
AAAAAATCCTAGAAAAATTTT
Found at i:15662636 original size:26 final size:26
Alignment explanation
Indices: 15662584--15662636 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15662574 GCTAACTTAG
* *
15662584 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
* *
15662610 GCATATGGAGTTCACTCCCAGTGTAA
1 GCATACGGAGTTCACTCCCAGTCTAA
15662636 G
1 G
15662637 ATCAGACCAG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCACTCCCAGTCTAA
Found at i:15662922 original size:774 final size:749
Alignment explanation
Indices: 15661000--15663286 Score: 2569
Period size: 769 Copynumber: 3.0 Consensus size: 749
15660990 CGGCTGAGCA
* * * * * * * ***
15661000 CCCGCACGCTCATTTCGTGGGTTAGCTTAGGGATACGAAGTTCATTCCCAGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCATGGGCTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAAA
* * * * * * * * * *
15661065 GTTCATTCCCAATCTAAGATCGGACCAGACCGAGGGTTGCGGTAGCACATGCTGGGCACAGGCAC
66 GTTCACTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGC-GCAGCACATCCTAGGCTCGGGCAA
* *
15661130 GTGCTGGTGCCGCATTTTTCTTCACCGGGGCACCATCGCCTGAGCATCGCCAGAGAACCTGACCG
130 GTGCTAGTGCCACATTTTTCTTCACCGGGGCACCATCGCC---G----G-C-GAGAACCTGACCG
* *
15661195 ACGGCATTGGGG-TTCCGACGATCGGAGGGGCC-GGGGGGTGTGTGCACATGATGTGCGATGGGT
186 ACGGCATTGGGGTTTCCG-CGATCGG-GGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGCGT
* * *
15661258 GCTGGTACTTGGCCCTTTTATTGGCCCCCTATCCCTCATCAAACCTC-GAGAACTCACACCCCCT
249 GCTAGTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCAG-GAACTCACACCCCCT
* * * * *
15661322 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTTTCTAAAATGGGGACA
313 TAAAGAACATTTGAGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGGACA
* * * *
15661387 CTTTTTTCAAATCGTCACAAAATCTTGTACACTTCAAGTTATTAGTTGAATTTTTTTG-TGCATG
378 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGATGCATG
* * * * *
15661451 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCAAAAAATCCTTCCAAAAAAATTTTA
443 CCAAAAAAAATACAAGGATCACGTCTACAAAGATTGGGGCCAAAAATCCTTCCGAAAAAATTTTA
* *** * ** * *
15661516 AAAAATCCTGAACCGTAAAAAGTTTTAAAAATCATGAAAAATAGAAAACGAGTTGTTTTGGCATG
508 AAAAATCCCGAACTACAAAAAATTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGACATG
* * *
15661581 AAAGTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
573 AAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCA
* * * * * *
15661646 CGTAGAAATATGAAGATGTGCCTAAACCCACAGGATCGAAGGTTACC-CCACAGGATCGGTAGCA
638 CGCAGAAATATGAAGATGTGCCAAAACCCAC-----C------CACCACC-C--TATCGAT-CCA
*** * * * * * ** * * * ** * *
15661710 CGCAGAGGGGGA-CCCGGTCGATCCCCGTCTTACGCA-T-CCCACCC-CTCTG---GTCGGCTGA
688 CG-ACTTGCGCATCCC-GTC--TCTCTGGCCGACGTAGTGCCCGCCCGC-CCGCCCACCCGCTCA
**
15661768 GCG
748 -TT
* * *
15661771 CCCGCACGTTCGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAAA
1 CCCGCACGCTCGTTTCATGGGCTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAAA
* * ** * * * *
15661836 GTTCATTCCCAGTCTAAGATCGGACTGGATCGAGGGTTGCGCAGCACATGCTAGGCTCGGGCATG
66 GTTCACTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGCAGCACATCCTAGGCTCGGGCAAG
15661901 TGCTAGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGAGCATCACCGAGAACCTGACCGAC
131 TGCTAGTGCCACATTTTTCTTCACCGGGGCACCATCGCC-G-G------CGAGAACCTGACCGAC
* * *
15661966 GGCATTGGGGTTTCTGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTTCGTTGCGTGCTA
188 GGCATTGGGGTTTCCGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGCGTGCTA
* * *
15662031 GTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCAGGAACTCACACCCTCTTAAAG
253 GTACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCAGGAACTCACACCCCCTTAAAG
*
15662096 AACATTTGAGATTTTACAGGTTTGCAGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
318 AACATTTGAGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTT
*
15662161 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCCAAC
383 TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGATGCATGCCAAA
* *
15662225 AAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
448 AAAAATACAAGGATCACGTCTACAAAGATTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAA
*
15662290 TCTCAAAAAAATCCTAGAAAAATTTTAAAAAATCCCAAAACAATTTTAAAAAATCATGAAAAATA
513 --TC--------CC--G---AA--CT-----A---CAAAA-AATTTT-AAAAATCATGAAAAATA
* *
15662355 GAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACA
551 GAAAACGAGTCATCTTGACATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTATGAATTTACA
* * *
15662420 AGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCCACCACCCTAT
616 AGCCATAAAAATGGAATTGGCACGCAGAAATATGAAGATGTGCCAAAACCCACCCACCACCCTAT
* * * * *
15662485 CGATTCTCGACTTGCGCATCCCGTCTCTCTGGCTGGCGTAGTGCCCGCCTGCCCGCCCACCCGCT
681 CGATCCACGACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCGCCCGCCCGCCCACCCGCT
15662550 CATT
746 CATT
***
15662554 CCCGCACGCTCGTTTCATGGGCTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCATGGGCTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAAA
* * * *
15662619 GTTCACTCCCAGTGTAAGATCAGACCAGACCGAAGGTTGCGACAGCATATCCTGGGCTGGGGCAA
66 GTTCACTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCG-CAGCACATCCTAGGCTCGGGCAA
* **
15662684 GTGCTGGTGCCACA-TTTTCTTCGTCGGGGCACCATCGCC-G-GAGAACCTGACCGACGGCATTG
130 GTGCTAGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGCGAGAACCTGACCGACGGCATTG
*
15662746 GGG-TTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCT-GATAC
195 GGGTTTCCG-CGATC-GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGCGTGCTAG-TAC
* * *
15662809 TTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTC-GAGAACTCACCCCCCCTTGAAGAGC
257 TTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCAG-GAACTCACACCCCCTTAAAGAAC
*
15662873 ATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
321 ATTTGAGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
15662938 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGATGCATGCCAAAAAA
386 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGATGCATGCCAAAAAA
*
15663003 AATACAAGGATCACGTCTACAAAGATTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCC
451 AATACAAGGATCACGTCTACAAAGATTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCC
* *
15663068 CGAACTACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGACATGAAACTTCA
516 CGAACTACAAAAAATTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGACATGAAACTTCA
* * * *
15663133 TGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGTAGAAA
581 CGTGAAGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGCAGAAA
* *
15663198 TATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCT
646 TATGAAGATGTGCCAAAACCCACCCACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCT
15663263 GGCCGACGTAGTGCCCGCCCGCCC
711 GGCCGACGTAGTGCCCGCCCGCCC
15663287 ACCCGCTCGT
Statistics
Matches: 1331, Mismatches: 136, Indels: 121
0.84 0.09 0.08
Matches are distributed among these distances:
748 184 0.14
749 5 0.00
750 5 0.00
753 1 0.00
758 1 0.00
760 2 0.00
763 1 0.00
765 3 0.00
768 7 0.01
769 307 0.23
770 64 0.05
771 92 0.07
772 4 0.00
773 34 0.03
774 212 0.16
775 72 0.05
779 10 0.01
780 2 0.00
781 15 0.01
782 7 0.01
783 121 0.09
784 38 0.03
785 4 0.00
786 2 0.00
791 1 0.00
794 4 0.00
795 5 0.00
796 128 0.10
ACGTcount: A:0.28, C:0.24, G:0.23, T:0.25
Consensus pattern (749 bp):
CCCGCACGCTCGTTTCATGGGCTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATACAAA
GTTCACTCCCAGTCTAAGATCAGACCAGACCGAAGGTTGCGCAGCACATCCTAGGCTCGGGCAAG
TGCTAGTGCCACATTTTTCTTCACCGGGGCACCATCGCCGGCGAGAACCTGACCGACGGCATTGG
GGTTTCCGCGATCGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGCGTGCTAGTACTTGG
CCCTTATATTGGCCCCCAATCCCTCATCAAACCTCAGGAACTCACACCCCCTTAAAGAACATTTG
AGATTTTACAGGTTTGCAGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATG
GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGATGCATGCCAAAAAAAATAC
AAGGATCACGTCTACAAAGATTGGGGCCAAAAATCCTTCCGAAAAAATTTTAAAAAATCCCGAAC
TACAAAAAATTTTAAAAATCATGAAAAATAGAAAACGAGTCATCTTGACATGAAACTTCACGTGA
AGGCTTAAGAGACCATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACGCAGAAATATGA
AGATGTGCCAAAACCCACCCACCACCCTATCGATCCACGACTTGCGCATCCCGTCTCTCTGGCCG
ACGTAGTGCCCGCCCGCCCGCCCACCCGCTCATT
Found at i:15663503 original size:26 final size:26
Alignment explanation
Indices: 15663473--15663525 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15663463 GTTGACTTAG
15663473 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15663499 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15663525 G
1 G
15663526 ATCGGATCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15664412 original size:26 final size:26
Alignment explanation
Indices: 15664376--15664428 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15664366 GTTGACTTAG
**
15664376 GCATACGGAGTTCATTGTCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15664402 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15664428 G
1 G
15664429 ATCAGATGCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.23, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15664856 original size:904 final size:903
Alignment explanation
Indices: 15662554--15670640 Score: 7481
Period size: 904 Copynumber: 8.9 Consensus size: 903
15662544 CCCGCTCATT
* * * * *
15662554 CCCGCACGCTCGTTTCATGGGCTAACTTAGGCATACGGAGTTCATTCCTAGTCTAAGCATATGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * * * *
15662619 GTTCACTCCCAGTGTAAGATCAGACCAGACCGAAGGTTGCGACAGCATATCCTGGGCTGGGGCAA
66 GTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* *
15662684 GTGCTGGTGCCACA-TTTTCTTCGTCGGGG---CA---C----CATCGCCGGAGAACCTGACCGA
131 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAACCTGACCGG
15662738 CGGCATTGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATGGGTG
196 CGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
* * * * *
15662802 CTGATACTTGGCCCTTATATTGGCCCCCAATCCCTCATCAAACCTCGAGAACTCACCCCCCCTTG
261 CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
*
15662867 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACT
326 AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
15662932 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGATGCATGCC
391 TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTG-TGCATGCC
* * *
15662997 AAAAAAAATACAAGGATCACGTCTACAAAGATTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
455 AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAA
** ** * *
15663062 AAATCCCGAACTACAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCATCTTGACATGAA
520 AAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAA
* * * *
15663127 ACTTCATGTGAAGGCTTAAGGGACTATTGTATGAATTTACAAGCCATAAAAATGGAATTGGCACG
585 ACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATG
* *
15663192 TAGAAATATGAAGATGTGCCAAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
650 CAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGT
* * * *
15663257 CTCTCTGGCCGACGTAGT----GCCCGCCCGCCCACCCGCTCGTCTCGTCGGTTAGCTTAGGCAT
715 CTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCAT
* * * * *
15663318 ACGGAGTTCATGCCCAGTCTAAGATCGGACCAGACCAAGGGTTGCGGTAGCAGGATCGACAGCAC
780 ACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGCAC
* ** * * * * * * *
15663383 CCAGATAGGGACCCGACTGATCCCCGGCTTGCGCATCCCGCCCGTCTGGCAGGCAGAGTG
845 GCAGAGGGGGACCCGGCCGAT-CCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
15663443 CCCGCACGCTTGTTTCATGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
15663508 GTTCATTCCTAGTCTAAGATCGGATCAGACCGAGGGTTGCGGTAGCACATGCTGGGCTCGGGCAT
66 GTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* ** ***
15663573 GTGCTGGTGCCTCATTTTTCTTCACCGGGGCAGGTTTAC-CGGAGCATCGCCGGAGAACCTGACC
131 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCA-CCAT-CGCGGAGCATCGCCGGAGAACCTGACC
* * * *
15663637 GACGGCATAGGGGTTCTGACGATCGGGGGGGGCC-A-GGGGGTGTGCACACATGATGTGCGATGG
194 GGCGGCATTGGGGTTCCGACGATC-GGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGG
* * *
15663700 GTGCTGGTACTTGGCCATTATATTGGCCCCCTATCACTCATCAAACCTCGAGAACTCACACCCCC
258 GTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCC
* * *
15663765 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTACCAGTAGCCGTTAAAGTGTTTGAAATGGGGAC
323 TTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGAC
15663830 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
388 ACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * *
15663895 CCAA-AAAAAGTACAAGGATCACATCTTCC-AGTTCTGGGGCCAAAACTCCATCCAAAAAAATTT
453 CCAACAAAAA-TACAAGGATCACGTCTACCAAGTT-TGGGGCCAAAACTCCTTCCGAAAAAATTT
* * * * *
15663958 AAAAAAATACCGCACCGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCA
516 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* * *
15664023 TGAAACTTTACGTGAAGGCTTAAGGGACCATTGTATGGATTTACAAGCCATAAAAATGGCATTAG
581 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * *
15664088 CATGTAGAAATATAAAGATGTGCCTAAACCCACCTACAACCCTATCGATCCACGGCTTACGCA-C
646 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * * * * *
15664152 TCGTCTCTCTGGGCGGCATAATGCCCGCCTGCCCGCCCGCCTGCTCGTTTCGTCGGATGGCTTAG
711 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * ** * *
15664217 GGATACTGAGTTTATTCCTAGTCTAAGATCAGACCAAACTGAGGGTTGCAGTAGCAGGATCTACA
776 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACA
* * * *
15664282 GCATGCAGTGGGGGACCCGACCGATCCTCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGGGCG
841 GCACGCAGAGGGGGACCCGGCCGATCC-CGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * **
15664346 CCCACACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTGTCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
*
15664411 GTTCATTCCCAGTCTAAGATCAGATGC-GACCGAGGGTTGCGGCAGCACATGCTAGGCTCGGGCA
66 GTTCATTCCCAGTCTAAGATCAGAT-CAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * *
15664475 TGTGCTGGTGCCACATTTTTCTTCGTTGAGGCACCATTGCAGGAGCATCGCCGGAGAACCTGACT
130 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGC-GGAGCATCGCCGGAGAACCTGACC
* * *
15664540 GGCGGCATTGGGGTTCCGACGATCGAGGGGGCCGAGGGGGGTATGCACACATGATGTGCGATGGG
194 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGG
15664605 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
259 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* *
15664670 TAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGCAGCCATTAAAGTGTCTGAAATGGGGACA
324 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
15664735 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTTAATTTTTTTGTGCATGC
389 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
15664800 CAACAAAAATACAAGGATCATGTCTACCAAGTTCGGGGCCAAAACTCCTTCCAAAAAAATTTTAA
454 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* *
15664865 AAAATCCCGAACGGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACAAGTCGTCTTGCCATGA
519 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
15664930 AACTTCACGTGAAGGCTTAACGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
584 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* * * * *
15664995 GCAGAAATATGAAGATGTGCGC-AAACCCACCTACCGCCCTATCGATTCATGACTTGCGTATCCC
649 GCAGAAATATGAAGATGTGC-CTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
15665059 GTCTCTCTGG-CGGACGTAGTGCCTGCCCGCCCGTCCGCCCGCTCGTTTCGTAGGTTGGCTTAGG
713 GTCTCTCTGGCCGG-CGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * * *
15665123 AATACGGAATTTATTCCCAGTCTAAGATTAGACCGAATCAAGGGTTGCA-TCAGCAGGAGCGATA
777 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGT-AGCAGGATCGACA
* * * * * *
15665187 GCACGCAAAGGGGGACCCGGTCGATCCCCGGGTTGCG-ATCCTGCCCCTCTGCCCGGCTGAGCG
841 GCACGCAGAGGGGGACCCGGCCGAT-CCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * **
15665250 CCCGCATGCTCATTTCATGCATTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * * * * * * * *
15665315 ATTCGTTCACAGTCTAAGATCGGATCGGACTGAGGGTTGCGACAGCACTTACTGGGCAT-GGGCA
66 GTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGC-TCGGGCA
* *
15665379 TGTGCTGGTGCTGCATTTTTCTTCGTCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACC
130 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGACC
* ** *
15665444 GGCGGCATTGGGGTTTCGGTGATCGGGGGGGCC--GGGGGGTGTGCACACATGATGTGCGATGGG
194 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGG
* * * *
15665507 TGCTTGTACTTGGCCCTTATATTAGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCTCCT
259 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* * * * *
15665572 TAAAGAGCATTTGAGATTTTACAGGTTTACTGCCAGTAGCCGTTTAAGTGTTTGAAATGGTGACA
324 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
15665637 CTTTTTTCAAATGGTCACAAAATCTTATACACTTCAAGTTTTTAGCTGAATTTTTTTGTGCATCC
389 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* ** * *
15665702 CAAAAAAAATACAAGGATCACAACTACCAAGTTTCGGGCCAAATCTCCTTCCGAAAAAATTTTAA
454 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * * *
15665767 AAAATCCCAAACCACAAAAAGTTT-GAAAATCGTGAAAAATAGAAAAAGAGTTGTCTTGCCATGA
519 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
*
15665831 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAAGTTACAAGCCATAAAAATGGCATTGGAAC
584 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG--C
*
15665896 AT--AGAAATATGAAGATGTGCCTAAACCCACCTACCAACCTATCGATCCACGGCTTGCGCATCC
647 ATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * * * **
15665959 CGTCTCTCTGGCCGGCGTAGAGCTCGCCCGCCCGCTCGCCTGCTCGTTTCATTAGTTGGCTTAGG
712 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * * * *
15666024 CATACGGAGTTCATTCCCAGTCTAAGACCAAATCAGACCAAGGGTT-AAGGCAGTAGGATCGACA
777 CATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCA-GTAGCAGGATCGACA
* * * * * * *
15666088 GCACGCAGAGGGGGACCCGGTCGATCCCAGGCTTGCACATACCACCCCTCTGGCCGACTGAGCA
841 GCACGCAGAGGGGGACCCGGCCGATCCC-GGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * *
15666152 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGACTAAGCATACAGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * **
15666217 GTTCATTCCCAGTCTAAGATCGGA-CTGATCCGAGGGTTATGGCAGCACATGCTGGGCTCGGGCA
66 GTTCATTCCCAGTCTAAGATCAGATCAGA-CCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* * * * **
15666281 TGTGCTGGTGTCGTATTTTTCTTCGTCGGGGTAACC-TCGTCGAAGCATCATCGGAGAACCTGAC
130 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGG-CACCATCG-CGGAGCATCGCCGGAGAACCTGAC
* * *
15666345 CGACGGCACTGGGGTTCCTG-TGATCGGGGGGGCCGA-GGGGGTGTGCGCACATGATGTGCGATG
193 CGGCGGCATTGGGGTTCC-GACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATG
15666408 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
257 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
*
15666473 CTTAAAGAGCATTTGAGATTTTACGGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
322 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* *
15666538 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTTATGCAT
387 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * * * *
15666603 CCCAACAAAAATAAAAGGATCACGTCTACCAAGTTTTGGGCCAAATCTCCTTCCAAAAAAATTTT
452 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAA-TTT
* * * * *
15666668 TAAAAAATCCCAAACCACAAAAAGTTT-GAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCA
516 TAAAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCA
* *
15666732 TGAAACTTCTCGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGGCATAAAAATGGCATTGG
581 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * * * *
15666797 CACGTAGAAATATGAAGATGTGCCTAAAACCACCTACCACCCTATTGATCCACGACTTGCGCATC
646 CATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
** * * *
15666862 CCGTCTCTCTGGCCGATGTAGT----GCCCGCCCGCCCGTCCGCTCATTT--T--GTCGG-TT-G
711 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAG
* * * * * ** * * *
15666917 GCATACGGAGTTCATTCCTAGTCTAGGATTAGTCCGGACCGAGAGTTGTGGCAGCAGGATTGGCA
776 GCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACA
** * * *
15666982 GCACATAGAGGGGGACCCGGCGGATCCCCGGCTTGA-GCATCCTGCCCCTCTGGCCGGCTGAGCA
841 GCACGCAGAGGGGGACCCGGCCGAT-CCCGGCTT-ACGCATCCCGCCCCTCTGGCCGGCTGAGCG
* *
15667046 CCTGCACACTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* * *
15667111 GTTCATTCCCAGTCTAAGATCGAAAT-GGATCGAGGGTTGCGGCAGCACATGCTGGGCT-GAGGC
66 GTTCATTCCCAGTCTAAGATC-AGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCG-GGC
* ** * *
15667174 ATGTGCTGGTGCCGCATTTTTCTTCGTCAGGGCACCATCGCCAGG-GCATCAACGGAAAACCTAA
129 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-C-GGAGCATCGCCGGAGAACCTGA
* * * * * * *
15667238 CCGACGACATTGGGGTTTCGACAATCGGGGGGGCCCAACGGGGGTGTGCGCACATGATGTACGAT
192 CCGGCGGCATTGGGGTTCCGACGATCGGGGGGG-CCGAGGGGGGTGTGCGCACATGATGTGCGAT
* *
15667303 GGGTGCTGGTAGTTGGCCCTTATATTGGCCCCCTATCCGTCATCAAACCTCAAGAACTCACACCC
256 GGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCC
* * *
15667368 CCTTAATGAGCATTTGAGATTTTACAGGTTTGCTGCGAGTAGCCATTAAAGTGTCTAAAATGGGG
321 CCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGG
* * *
15667433 ACACTTTTTTCAAATGGTCACAAAATCTAGTACACTTAGAGTTTTTAGCTGAATTTTTTTTTTTT
386 ACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA---TTTTTTTGT
* *
15667498 GCATGCCAA-AAAGAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAACCCCTTCCGAAAAA
448 GCATGCCAACAAA-AATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
* **
15667562 ATTTTAAAAAATCCTGAACCAG-AAAAAGTTTCAAAAATTGTGAAAAATAGAAAACGAGTCGTCT
512 ATTTTAAAAAATCCCGAACC-GCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCT
*
15667626 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATTGC
576 TGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGC
* * **
15667691 ATTGGCATGCAGAAATATGAAGATGTGGCTAAACCCACCTACCACCCTATCCATCTGCGGCATTG
641 ATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGC-TTG
* ** * *** ** ** * ** ** ** * * * *
15667756 GGGTTCCGACGAC-CGAAGGGCCGG-GGGGTGTACG--CACATG-ATGTGCGATGGGTGC-T-GG
705 CGCATCC--CGTCTC-TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGG
* * **** * * ** ** ***
15667814 -T-ACTT-GGCCCTTATATTGGCCCCCTATCCCTCA-TCAAACCTCGAGAACTCACACC--CCCT
767 TTGGCTTAGG--C--ATA-CGGAGTTC-ATTCC-CAGTCTAAGATC-AG-AC-CGGACCGAGGGT
** * * * ***** ** * *** *
15667873 TAAAG-AGCA--TTTGAGATTTTACAG-GTTTGCTG-CCACTAGCC-ATTAAAGTG-TCTA--AA
822 TGCAGTAGCAGGATCGACAGCACGCAGAG---GGGGACC-C-GGCCGA-TCCCG-GCT-TACGCA
*** * * * ** ** * *
15667929 TTGGGGACACTTTTTTCAAACGGTCACAAACT
879 -TCCCG-CCCCTCTGGC---CGG-C-TGAGCG
* ** * ** ** * ** * * *
15667961 CTTCTC-CACTTCAATTTTTTAGCTGAATT-TTTTTGTGCATCCAACAAAAATACAAGGATCACC
1 C--C-CGCAC-GC--TCGTTTCG-TGGGTTGACTTAG-GCAT---AC-GGAGTTC-A--TTC-CC
* ** ** ** * ** * * * * *** ** * *
15668024 --TCTACCA-AATTTGG-GGACAAAACTCTTTCTAA-A-AAAATTTA-A--AAAAATCCCGAACC
50 AGTCTA--AGCATACGGAGTTC-ATTCCCAGTCTAAGATCAGA-TCAGACCGAGGGTTGCG-GCA
* * * * ** * ** * ** ** * **
15668080 GTAACAAG-T---TTC--GAAAAT-C--ATGAAGAATTTTAAAAAATTC--CCAGTCTAAGATCG
110 G-CACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTT----TCTTCGTCGGGGC-ACCATC-
* ** ** * * * * *
15668134 GACCGGACCGAGGGTTGCGACAACACATG-CTGGGCTCGGGCATGTGCTGGTGCCACATTTTTCT
168 G--CGGAGC-ATCGCCG-GAGAAC-C-TGAC-CGG--C-GGCAT-TG-GGGTTCC-GA-----C-
* * ** * * * *
15668198 TCATC-GGGGCGCC-ATTGTCGGAGCATCGCTGGAGAACCTGATCG-GCGGCACTGGG-GTTTCG
214 -GATCGGGGGGGCCGA--G--GG-GGGT-G-T-GCGCACATGAT-GTGC-G-A-TGGGTG-CT-G
** * ** *** * * * * **** *
15668259 GTGATCGGGGGCCGAAGGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTA
264 GT-A-CTTGGCCCTTA---TATTG-GC-CCCCT-A--T-C-------CCT--CA-TCAAACCTCA
* * * * * * * ** * ** ** * ***
15668324 TATTG-GCCCACTATCCCTCATCAA-A-CCTCT-AGAACTCACACCCCCTAAAAGAT-CTTTTGA
308 -A--GAACTCAC-A-CCCCCTTAAAGAGCATTTGAGATTTTACA---GGT--TTGCTGCCAGT-A
*** * ** ** * * *
15668384 GATTTTACAGGTTTGT-TGCCA-GTAGCCA-TTAAAGTGTCTGAAATGGGGACACTTTTTTCAAA
362 GCCATTA-AAG--TGTCTGAAATGGGGACACTT----T-TTTCAAAT---G--------------
* ** *
15668446 TGGTCACAAAATCTTGTACACTTTGAGTTTTTAATTGAATTTTTTTATGCATGCCAACAAAAATA
402 --GTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATA
* * *
15668511 CAAGGATCACGTCTACAAAGTTTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATTCCGAA
465 CAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCCCGAA
*
15668576 CCGCAAAAAGTTTCAAAAATTATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
530 CCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTG
* * *
15668641 AAGGCTTAAGGGACCTTTGTATGAATTTACAAGCTATAAAAATGGCATTGTCATGCAGAAATATG
595 AAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATG
* * **
15668706 AAGATGTG-CTGAAACCCACCTACCACTCTATCGATCCACGACTTGCGCATCTTGTCTCTCTGGC
660 AAGATGTGCCT-AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGC
* * * *
15668770 CGGCATAATGCCCGCCCGCCCGTCCGCCCGCCCGCTCGTTTCATCGGTTGGCTTAGGCAGACGGA
724 CGGCGTAGTGCCCGCCCG--C--CCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGA
* * * * * * * * * * *
15668835 GTTCATTCCCAGTCTGAGGTCAGATCGGACTGAGGGTTGCGGCAGTAAGATTGGCAGCACAC-GA
785 GTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACGCAG-
** * * * * **
15668899 AGGGGGACCCGATCGATCCCTGGTTTATGCATTCCACCCCTCTGGCCGATTGAGCG
849 AGGGGGACCCGGCCGATCCC-GGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCG
* * * *
15668955 CCCGCACGCTCATTTTGTGTGTTGACTTATGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
1 CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
* ** * ** *
15669020 GTTCATTCCTAGTCTAAGATTGGACCAGACCGAGGGTTGCAACAGCACATGCTGGGCTCGAGCAT
66 GTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
* * * * * *
15669085 CTGCTGGCGCTGCATTTTTCTCCGTCGGGGCACCAT--C---G--T---CAGAGAACCTGACCAG
131 GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAACCTGACCGG
* * * *
15669140 CGGTATTGGGGTTCCTG-CGATCGGGGGGGCC-TGTGGGGTGTGCGCACATGATGTGTGATGGGT
196 CGGCATTGGGGTTCC-GACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGT
* * *
15669203 GCTGGTACTTGGCCTTTATATTGGCCCCCTATGCCTCATCAAACCTCGAA-AACTCACACCCCCG
260 GCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTC-AAGAACTCACACCCCCT
* * *
15669267 TAAAGAGCATTTGAGATTTTATAGGTTTGCTGCCAATAGCCATTAAAGTGTCTAAAATGGGGACA
324 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* *
15669332 CTTTTTTCAAATGGTCACAAAATCTTGTACATTTCGGGTTTTTAGCTGAATTTTTTTGTGCATGC
389 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *** **
15669397 CAAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAAGAACTTTTGAAAAAATTTTA
454 C-AACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
* **
15669462 AAAAATCCCAAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTAATGCCATG
518 AAAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
15669527 AAACTTCACGTGAAGGCTTAAAGGACCATTGTATGAATTTAGAAGCCATAAAAATGGCATTGGCA
583 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* * *
15669592 TGAAGAAATATGAAGATGTGCATAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCT
648 TGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * * * *
15669657 GTCTCTCCGGCCGGCGTAGTGCCCGCCCTCTTGCCCACCCGTCTGCTCATTTCGTCGGTTGGCTT
713 GTCTCTCTGGCCGGCGTAGTGCCCG-CC-C--GCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTT
*
15669722 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTAG-GGTAGCAGGATCG
774 AGGCATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTT-GCAGTAGCAGGATCG
** * * ** * * *
15669786 GTAGCATGTAGA-GGGGACCCGGCCGATCCCTGGCTTGTGCATCCCGTCCCTCTAGCCGACTGAG
838 ACAGCACGCAGAGGGGGACCCGGCCGATCCC-GGCTTACGCATCCCGCCCCTCTGGCCGGCTGAG
15669850 CG
902 CG
* *
15669852 -CCGTTACGCTTGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA---
1 CCCG-CACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGG
* *
15669907 AG---A-T--C-G-----GATC-G----GACCGAGGGTTACGGCAGCAAATGCTGGGCTCGGGCA
65 AGTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCA
* *
15669955 TGTGCTGGTTCCGCATTTTTCTTCGTCGGGGCACCATCGTCGGAGCATCGCCGGAGAACCTAACC
130 TGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCG-CGGAGCATCGCCGGAGAACCTGACC
** * *** * *
15670020 GGCGATATTAGGGTT----C--T---GGCAACCG-GGGGGGTGTGCGCACATAATGTGCGATGGT
194 GGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
15670075 TGCTGGTGCTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCGCCT
259 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCT
* *
15670140 GAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
324 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
15670205 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATAC
389 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * *
15670270 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCTAAAGCTCTTTCCGAAAAAATTTTAA
454 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * * * * *
15670335 AAAATCTCGAACCGTAAAAGGTTTCGAAAATCATGAAAAATAGAAAACAAGTCGTCTTACCATGA
519 AAAATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGA
15670400 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
584 AACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCAT
* **
15670465 GCAGAAATATGAAGATGTGACC-AAACCCACCTACCACCCTATTGATCCACGGCTTGCGCATCAT
649 GCAGAAATATGAAGATGTG-CCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
* * *
15670529 GTCTCTCTAGCCGGCGTAGTGCCCGCCAGCCCGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGC
713 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGC
* *
15670594 ATACGGAGTTCATTCCCACTCTAAGATCGGACCGGACCGAGGGTTGC
778 ATACGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGC
15670641 GGCAGCACTT
Statistics
Matches: 5873, Mismatches: 1006, Indels: 659
0.78 0.13 0.09
Matches are distributed among these distances:
867 1 0.00
868 75 0.01
871 66 0.01
872 256 0.04
873 211 0.04
874 1 0.00
875 1 0.00
876 4 0.00
877 1 0.00
878 1 0.00
879 1 0.00
881 1 0.00
882 24 0.00
884 1 0.00
885 1 0.00
888 2 0.00
889 126 0.02
890 13 0.00
891 2 0.00
892 1 0.00
893 5 0.00
894 284 0.05
895 13 0.00
896 206 0.04
897 134 0.02
898 371 0.06
899 236 0.04
900 258 0.04
901 532 0.09
902 535 0.09
903 604 0.10
904 858 0.15
905 145 0.02
906 3 0.00
907 10 0.00
908 6 0.00
909 21 0.00
910 16 0.00
911 1 0.00
912 4 0.00
913 4 0.00
914 1 0.00
915 3 0.00
916 6 0.00
917 13 0.00
918 4 0.00
919 6 0.00
920 21 0.00
921 23 0.00
922 6 0.00
923 10 0.00
924 13 0.00
925 18 0.00
926 15 0.00
927 12 0.00
928 17 0.00
929 7 0.00
930 4 0.00
931 4 0.00
932 1 0.00
936 1 0.00
937 3 0.00
938 6 0.00
939 3 0.00
940 3 0.00
941 5 0.00
942 3 0.00
943 3 0.00
944 9 0.00
945 2 0.00
946 7 0.00
947 6 0.00
948 6 0.00
949 6 0.00
950 7 0.00
951 2 0.00
952 9 0.00
953 3 0.00
954 3 0.00
955 5 0.00
956 2 0.00
958 2 0.00
959 4 0.00
960 7 0.00
961 1 0.00
966 1 0.00
967 5 0.00
968 3 0.00
969 9 0.00
970 9 0.00
971 7 0.00
972 6 0.00
973 9 0.00
974 7 0.00
975 9 0.00
976 6 0.00
977 2 0.00
978 3 0.00
979 1 0.00
980 9 0.00
981 13 0.00
982 8 0.00
983 8 0.00
984 8 0.00
985 5 0.00
987 2 0.00
988 10 0.00
989 13 0.00
990 4 0.00
991 2 0.00
992 11 0.00
993 8 0.00
994 8 0.00
995 9 0.00
996 240 0.04
997 6 0.00
998 2 0.00
999 50 0.01
1000 20 0.00
1001 14 0.00
1002 9 0.00
1003 3 0.00
1004 2 0.00
1005 3 0.00
1006 2 0.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.25
Consensus pattern (903 bp):
CCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGCATACGGA
GTTCATTCCCAGTCTAAGATCAGATCAGACCGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCAT
GTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCGGAGCATCGCCGGAGAACCTGACCGG
CGGCATTGGGGTTCCGACGATCGGGGGGGCCGAGGGGGGTGTGCGCACATGATGTGCGATGGGTG
CTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTA
AAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACT
TTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCA
ACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAA
AATCCCGAACCGCAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATGAAA
CTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGC
AGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTC
TCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATA
CGGAGTTCATTCCCAGTCTAAGATCAGACCGGACCGAGGGTTGCAGTAGCAGGATCGACAGCACG
CAGAGGGGGACCCGGCCGATCCCGGCTTACGCATCCCGCCCCTCTGGCCGGCTGAGCG
Found at i:15665310 original size:26 final size:26
Alignment explanation
Indices: 15665280--15665332 Score: 79
Period size: 26 Copynumber: 2.0 Consensus size: 26
15665270 ATTGACTTAG
* *
15665280 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAATTCATTCACAGTCTAA
*
15665306 GCATACGGAATTCGTTCACAGTCTAA
1 GCATACGGAATTCATTCACAGTCTAA
15665332 G
1 G
15665333 ATCGGATCGG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAATTCATTCACAGTCTAA
Found at i:15666212 original size:26 final size:26
Alignment explanation
Indices: 15666182--15666234 Score: 81
Period size: 26 Copynumber: 2.0 Consensus size: 26
15666172 GTTGACTTAG
15666182 GCATAC-GAAGTTCATTCCCAGACTAA
1 GCATACAG-AGTTCATTCCCAGACTAA
*
15666208 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGACTAA
15666234 G
1 G
15666235 ATCGGACTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
26 24 0.96
27 1 0.04
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGACTAA
Found at i:15667112 original size:26 final size:26
Alignment explanation
Indices: 15667076--15667128 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
15667066 GTTGACTTAG
15667076 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15667102 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15667128 G
1 G
15667129 ATCGAAATGG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15669021 original size:26 final size:26
Alignment explanation
Indices: 15668985--15669037 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15668975 GTTGACTTAT
15668985 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15669011 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15669037 G
1 G
15669038 ATTGGACCAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15673436 original size:868 final size:867
Alignment explanation
Indices: 15670560--15685002 Score: 16117
Period size: 868 Copynumber: 16.3 Consensus size: 867
15670550 CCCGCCAGCC
* * * * *
15670560 CGCCCGCCCGCTCGTTTCGTTGGTTGGCTTAGGCATACGGAGTTCATTCCCACTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
15670625 CCGGACCGAGGGTTGCGGCAGCACTTGCTGGGCTCAGGCATGTGCTGGTGCCACTTTTTTCTTCG
66 CCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* ** * *
15670690 TCAGGGCACCATTGCCAGAGCATCATCGGAGAACCTGACCGGTTGCTTTGGGGTTCCGATGATCG
131 TCGGGGCACCATT------G---CATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * * *
15670755 GGGGGGCC-GGGGGGTGTGCACACATGATGTGTGAAGGGTGCTGATACTTGGCCCTTATATTGG-
187 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* ** *
15670818 CTCCTATAACTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTGGAGATTTTACAGGT
252 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * * *
15670883 TTGCTGCCAGTAACCATTAAAGTGTATGAAATGCGGACACTTTTTTCAAATGGTCACGAAATCTT
317 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * *
15670948 GTACACTTCGAGTTTTTAGCTGAATTTTTTTATACATGCCAACAAAAATACAAGGATCATGTCCA
382 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* *
15671013 CCAAGTTTGGGGCCAAAACTCGTTCCAAAAAAATTTTAAAAAA--T----CC-TAAAAAG--TC-
447 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
*
15671068 -----C-TGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACCTCACGTGAAGGCTTAAGGGACC
512 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* *
15671127 ATTGTATGAATTTACAAGCCATAAAAATGGCACTGGCACGTAGAAATATGAAGATGTGCCTAAAC
577 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAAC
* * * ***
15671192 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCTGTCTCTTTGGCCGGTGTAGTGCCCTTT
642 CCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCC
* ** *
15671257 TGCCCG--C-CAACTCGTTTCGTCGGTTGCCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAAT
707 CGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT
* * * * * * * * **
15671319 -GGACC-GAACCGAGGGTTGCGATAGCTGGATCAGTAGCACACAGAGTGGGACCAGGCCGATCCT
771 CGGACCAG-ACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC-
*
15671382 CGGCTTGCGCAT-CCTGCCCCTCTGGCCGACTGAG
834 CGGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAG
* * * * * * *
15671416 CGCCCACACACTCATTTCATGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAGGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * * *
15671481 CTGGACCGAGGGTTGTGGCAGCACATGCCGGGCTCGAGCATGTGCTGGTGCCACATTTTTCTTC-
66 CCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * ** * * *
15671545 ACCGGGCACCA-T-CACCAAAGAACCTGACCGGCGGCATTGGGGTTCTGACTATCGAGGGGGCCG
131 TCGGGGCACCATTGCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* *
15671608 GGGGGGTGTGCACGCATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
196 GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
* * *
15671673 CTCTTCAAACCTCGATAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAAGTTTGCTGCCA
261 CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
* * *
15671738 GTAGCCATTGAAGTGTTTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACATC
326 GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
*
15671803 GAGTTTTAAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT-
391 GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
* * * * *** * **
15671867 GTGCCAAAACACCTTCCAAAAAAATTTTAAAAAATCCCGAACAACAAAAAGTTTTAAAAATTATG
456 GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTG
*
15671932 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAATGGACCATTGTATGA
521 AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
** *
15671997 ATTTACAAGCCATAAAAATGGCATTGGCACATAGAAATATGAAGATGTGCCTAAACCCACTTACC
586 ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
* * * * *
15672062 ACACTATCAATCCACGGCTTGCGCATCCCGTCTCTCCGGTCGACGTAGTGCCCGCCCGCCCG--C
651 ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
* *
15672125 -CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCTAGTCTAAGATCGGACCGGAC
716 GCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
* * ** * * ** *
15672189 CGAGGGTTGCGGCAATAGGATCGGCAGCACGCAGAGGGGGAACTGGCCGATCCCTGGCTTACGCA
781 TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCC-GGCTTGCGCA
* * *
15672254 TCCCGCCCCTTTGGCCGGTTGAG
845 TCCCTCCCCTCTGGCCGGCTGAG
* * ** * * *
15672277 TGTCCAAACGCTCGTTTCATGGGTTGACTTTGGCATACGAAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
* *
15672342 GAGCTCATTCCCGGTTTAAGATCGGATCGGACCGAGGGTTGTGGCAGCACATGCTAGGCTCGGGC
63 -AG---A---CC-G-----GA-C---T------GAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * *
15672407 ATGTGCTGGTGCCGCATGTTTCTTCGTCGAGGCACCA-T-CGTCGGAGAACTTGACCGGCGGTAT
105 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCATCGGAGAACCTGACCGGCGGCAT
* * *
15672470 TGGGGTTCCGACGATCGGGGGAGCCGGGGGGGCTGTGCGCACATAATGTGTGATGGGTGCTGGTA
170 TGGGGTTCCGACGATCGGGGGGGCCGGGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTA
* * * *
15672535 CTTGGCCCTCATATTGGCCCCCTATCGCTCATCAAACTTTGAGAACTCACACCCCCTTAAAGAGC
234 CTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGC
* * *
15672600 ATTTGAGATTTTACAGGTTTGCTTCAAGTAGCCATTAAAGTGCCTGAAATGGGGACACTTTTTTC
299 ATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTC
* *
15672665 AAATGGTCACAAAATCTTCTACACTTCGAGTTTTTAGCTGAATTGTTTTGTGCATGCCAACAAAA
364 AAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAA
* * * *
15672730 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAATATTTCAAAAAATCCC
429 ATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC
* * * *
15672795 GAATCGTAAAAAATTTCAAAAATCATCAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
494 GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCAC
* * * *
15672860 GTGAAGGCTTAAGAGACCATTGTATGAATTTAGAAGCCATAAAAATGGCACTGGCACACAGAAAT
559 GTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAAT
*
15672925 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATTCACGGCTTGCGCATCCCGTCTCTCTG
624 ATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTG
* * * * * *
15672990 GTCAGTGTAGTGCCCGCCCGCCCGCCCGCCAACTCGTTTCGTCAGTTGGCTTAGGTATACGGAGT
689 GCCGGCGTAGTGCCCGCCCGCCCGCCCGCC-GCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGT
* * * **
15673055 TCATTCCCAGTCTAAGAAT-GGACCAGACTAAGGGTTGCAGCAGCAGGATCAACAGCACGCAGAG
753 TCATTCCCAGTCTAAG-ATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAG
* * * * *
15673119 GGGGACCCGGTCGATTCCCGGCTTGCGCATCCCTTCTCTCTGGCCGGTTGAA
817 GGGGACCCGATCGA-TCCCGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
* *
15673171 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGAAGTTCATTCCCAGTCTAAGATCAGC
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* **
15673236 CCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGTATGTGCTGGTGCCATATTTTTCTTCG
66 CCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * * *
15673301 TCAGGGCACCATTGC-T-GGAGAACTTGACCGGTGGCATTGAGGTTCCGACGATCGGGGGGGTCG
131 TCGGGGCACCATTGCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
* * * * * *
15673364 GGGGGGCTGTGCACACATAATGTGCAATGGGTGCTGGTAATTGGCCCTTATATTGGCCCCTTAAC
196 GGGGGG-TGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATC
* *
15673429 CCTCATCAAACCTCAACAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
260 CCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCC
15673494 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
325 AGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTT
* * * *
15673559 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAAAAAAAATACAATGATCATGCCTACCAAGTTT
390 CGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTT
* * *
15673624 GGGGCCAAAAATCCTTCTGAAAAAA-TTTAAAAAATC-CTGAACCGTAAAAAGTTTCAAAAATCA
455 GGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTC-GAACCGTAAAAAGTTTCAAAAATCG
* * * *
15673687 TGAAAAATAAAAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGAGACCATTGTT
519 TGAAAAAT-AGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
15673752 TGAATTTACAAGCCATAAAAATGGCATTGGCATGAAAAAATATGAAGATGTGCCTAAACCCACCT
583 TGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCT
* *
15673817 ACCACCCTATCGATCCACGACTTGCGCATCGCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
648 ACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * * *
15673882 CCCGCCCGCTCTTTTCGTCAGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGACCAGACC
713 CCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACC
* * * * * * * * **
15673947 GGACTGAGGGTTACGGCAACAAGATCAGCAGCACACAGAGGGGGACCCGGTCGATCCTAAGCTTG
777 AGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC-CGGCTTG
* *
15674012 CGCATCCCGCCCCTCTGGCCAGCTGAG
841 CGCATCCCTCCCCTCTGGCCGGCTGAG
* * * * *
15674039 CGCCGGCATGCTTGTTTCGTGGGTTGACTTAGGCATACGGAATTCATTCCCGGTCTAAGCATACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAG--T---C-TA-A
*
15674104 GAGTTCATTGCCAGTCTAAGATTGGATCGGACTGAGGGTTGTGGCAGCACATGCTGGGCTCGGGC
59 GA--TCA--G--A--C-----------CGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
15674169 ATGTGCTGGTGTCGCATTTTTCATCGTC-GGGCACCA-T-CATCGGAGAACCTGACCGACGGCAA
105 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCATCGGAGAACCTGACCGGCGGC-A
* * *
15674231 TTGGGGTTCCAGA-GATCGGGGGGGCCGTGGGGGTGTGCGCACATGATGTGTGATGGGTACTGGT
169 TTGGGGTTCC-GACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGT
*** * * *
15674295 ACTTCAACCTTATATTGGCCCCCTAT-CCTACATCAAAACTTGAAAACTCACACCCCCTTAAAGA
233 ACTTGGCCCTTATATTGGCCCCCTATCCCT-CATCAAACCTCGAGAACTCACACCCCCTTAAAGA
* * *
15674359 GCATTTGAGATTTTACAGGTTTGCTACTAGTAGCCATTAAAGTGTCCGAAATGGGGACACTTTTT
297 GCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTT
* * *
15674424 TCAAATGGTCACAAAATCTTGTAGACTTCAAGTTTTTAGCTGAGTTTTTTTTGTGCATGCCAACA
362 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGA-ATTTTTTTGTGCATGCCAACA
* * * *
15674489 ATAATACAAGGATCACGTCTACCAAGTTTGGTGCCAAAAATCCTTCCGAAAAAAATTTAAAAAAT
426 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAAT
* * * * *
15674554 -TCAAAACTGTAAAAAGTTTCAAAAATCATGAAAAATAGAAAACGAGTCATCTTACCATGAAACT
491 CTC-GAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * *
15674618 TCACGTGAAGGCCTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGCAA
555 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
* * *
15674683 AAATATGAAGATGTGCCTAAACCCACCTCCCACCCTATCGATCCACGACTTGCGCATCCCGTATC
620 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTC
* *
15674748 TCTGGTCGGCGTAGTGCCCGCTCGCCCGCCCGCCCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
685 TCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGGCATACG
** * * * * * *
15674813 GAGTTCATTCATAGTCTAAGATCAGACCAGAC-CAGGGTTTGTGGCAGTAGGATCAGCAGCACGC
749 GAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGG-TTGCGGTAGCAGGATCGGCAGCACGC
* * * * *
15674877 AGAGGGGGACCCGACCAATCCTTGGCTTGCGCATGCCGCCCCTCTGGCCGGCTGAG
813 AGAGGGGGACCCGATCGATCC-CGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
* * *
15674933 CACCCACACGCTCGTTTTGTGGGTTGACTTAGGCATATGGAGTTCATTCCCAGTCCAAGCATACG
1 CGCCCGCACGCTCG--TT-T-CG-TG-----GG--T-T-GA---C-TT---AG-----GCATACG
* * *
15674998 GAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTACGGCAGCACATGCTGGGCTCGGG-
40 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * *
15675062 ATGTGCTGGTGCCGCATTTTT-TTCGCCAGGGCACCATCGCCGAAGCATCGTCGGAGAACCTGAC
105 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT------TGCA---TCGGAGAACCTGAC
* ** * *
15675126 CGGCGGTATTGGGGTTCCGGTGATC-GGGGGGCTGGGGGGGTGTGCGCACATGATGTACGATGGG
161 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
15675190 TACTGGTACTTGGCTCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
226 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
15675255 TAAAGAGCATTTGAGATTTTACAGATTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATGGGGACA
291 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
15675320 CTTTTATT-GAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCAAG
356 CTTTT-TTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATG
* * * * *
15675384 CCAA-AAAAATACAGGGATCATGTCTACCAAGTTTGGGGCTAAAACACCTACCGAAAAAATTTTA
420 CCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTA
*
15675448 AAAAATAC-CTAACCG-AAAAAGTTTTC-AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
485 AAAAAT-CTCGAACCGTAAAAAG-TTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCA
*
15675510 TTAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
548 TGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGG
* * *
15675575 CATGCAGAAATATGAAGATGTGTCTAAACCCACCTACCACCCTATCGATCCACGGCTTGTGCATC
613 CACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
15675640 CCGTCTCTCTGGCTGACGTAGTGCCCGCCCGTCTG--C-CCG--C----C-TCGGTTGGCTTAGG
678 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGG
* * ** **
15675695 CATACGGAGTTGATTCCCAGTCTAAGATCAGACCAGACCAAGGGTTGCAATAGCAGGATCGGCAG
743 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAG
* * * * * *
15675760 CATC-TAGAGGGGGACCCGATCGATCCCCGACTTGCACAT-CTTGCCCCTCTGGTCGACTGAG
808 CA-CGCAGAGGGGGACCCGATCGAT-CCCGGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAG
** * * * * * *
15675821 CGCCCGCACGCTCGTTTTATTGATTGACTTTGGCATACTGAGTTCATTCCCAATCTAAGCGTACA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
*
15675886 GAGTTCATTCCCAGTCTAAGATTGGACCGGATCAAAGGTTGCGGCAGCACATGCTGGGCTCGGGC
63 -AG---A---CC-G-----GACT-GA---G------GGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
15675951 ATGTGCTGGTGCCACATTTTTCTTCGTTGGGGCACCATCGCTGGAGCATCGCCGAAGAACCTGAC
105 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---T---GCATCG--G-AGAACCTGAC
* * *
15676016 CAGCGGCATTGGGGTTCCGACGATC-AGGGGGCCGGGGGGGTGTGCGCACATGATGTGTGATGGG
161 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* *
15676080 TGCTGGTACTTGGCCCTTATATTGGCCTCCTTTCCCTCATCAAACCTCGAGAACTCACACCCCCT
226 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* *
15676145 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTAAAATAGGGACA
291 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
* * *
15676210 CTTTTTTCGAATGGTCACAAAATCGTGTACACTTCGAGTTTTTAGCTGAATTTTTTTATGCATGC
356 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGC
* * * *
15676275 CAACAAAAATACAAGGATCATGTCTGCCAAGTTAGGGGCCAAAACTCCTTCCCAAAAAATTTTAA
421 CAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAA
* * ** *
15676340 AAAATC-CCAATCCGCAAAAAGTTTTGAAAATCATGAAAAATAGAAAACGAGTCGTCTTGCCATG
486 AAAATCTCGAA-CCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATG
* *
15676404 AAACTTCACATGAAGGCTTAAGGGACCATTGTCTGAATTTACAAGCCATAAAAATGGCATTGGCA
550 AAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCA
* **
15676469 CGTAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATTGC
615 CGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCC
** * *
15676534 GTCTCTCTGGCCAACGTAGTGCCCGTCTGCCCG--C-CCGCTCGTTTCGTCGGTTGGCTTAGGCA
680 GTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCA
* * * * * *
15676596 TACGGAGTCCATTCCCAGTCTAAGATTGGACCAGACCGAGGGTTGCAGTAGTAGGATTGGCAGCA
745 TACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCA
* * * **
15676661 CGCAGAGGGGGACCCGGTCGATCCCCGACTTGCGTAT-CCTGCCCCTCTGGCCGATTGAG
810 CGCAGAGGGGGACCCGATCGAT-CCCGGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAG
* *
15676720 CACCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAATATC-GA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG-
* * * * * * *
15676784 ACCGGATTGAGGGTTGTGACAGCACATGCTAGGCTCGGGCATGTGTTGATGCCGTATTTTTCTTC
65 ACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
** * *
15676849 ACCGGGGCACCATTGCTGGAGCATCGTCGGAGAGCCTGACCGACGGCATTGGGGTTCCGACGATC
130 GTCGGGGCACCA-T--T---GCA---TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATC
15676914 GGGGGGGCCGGCGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
186 GGGGGGGCC-G-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATT
* * *
15676979 GGTCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGGGATTTTACA
249 GGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACA
* * * *
15677044 GGTTTACTGCCAGTAGCAATT-AA-------AAAGGGGGACATTTTTTTCAAATGGTCACAAAAT
314 GGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAAT
* * * * * *
15677101 CTTGTACACTTTGAATTTTTAGATGAA-TTTTTTATGCATGCCAACAAAATTACAAGGATCATGT
379 CTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGT
* * * * * *
15677165 CTACTAAGTTTGGGGCCAAAAATCCTTCCAAAAAAATTTTAAAAAATCCCAAACCGTAAAAGGTT
444 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTT
* *
15677230 TCGAAAATTGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
509 TCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGG
* * * *
15677295 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCATGAAAAAATATGAAGATGTACCTA
574 ACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTA
* * *
15677360 AACCCACCTACCACCCTATCGATCCACGACTTGCGCATCCCATCCCTCTGGCCGGCGTAGT----
639 AACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCC
* * * *
15677421 ----GCCCG--C-CCGCTCGTTTCATCAGTTGGCTTTGGCATACGGAGTTCATTCCTAGTCTAAG
704 GCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
* * * * *
15677479 ATCAGACCAGACCGAGGGTTGCAGTAGTAGGATCAGCAGCACGCAGAGGGGGACCCGATCGATCC
769 ATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT-C
* *
15677544 CCGGCTTGTGCAT-CCTGCCCCTCTGGCCGGGTGAG
833 CCGGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAG
* * * * * * *
15677579 TGCCTGTACGCTCATTTCGTGAGTTGACTTAGGCATACGGAGCTCATTGCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
* * *
15677644 GAGTTCATTCCCAGTCTAAGATCGGATTGGACCGAGGGTTGCGACTGCACATGCTGGGCTCGGGT
63 -AG---A---CC-G-----GA-C----T-----GAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* ** ** * * *
15677709 ATGTGCTGGTGCCACATTTTTCTTCACCGGGGCACCACCGCCAGAGCATCGTCGAAAATCTTGAT
105 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGG---CA---CCATTGCATCG--GAGAA-CCTGAC
* * *
15677774 CGGTGGCATTGGGGTTCCGACGATC-GAGGGGCCGGGGGGGTGGTGTGCGAACATGATGGGTG-G
161 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCC--GGGGG-GGTGTGCGCACATGAT--GTGCG
* * *
15677837 ATGGGTGCTGGTACATGGCCCCTATATTGGCCCCCTATTCCTTCATCAAACCTCGAGAACTCACA
221 ATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA-TCCCTCATCAAACCTCGAGAACTCACA
* *
15677902 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCTAGTAGCCATTAAAATGTCTGAAATG
285 CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
*
15677967 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTG-ATTTGTTTTA
350 GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTT-TTTTG
* * *
15678031 TGCATGCAAACAAAAATACAAGGATCATGTCTACCAAGTTTGGGGCCAAAACTCCTTTCGAAAAA
414 TGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAA
15678096 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
479 ATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15678161 GCCATGAAACTTCACGTGAAGGATTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
544 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
* * * * *
15678226 TTAGCATGCAAAAATATGAAGATGTGCCTAAACCCACCTAGCACCCTAT-GATCCATGGCTTGCG
609 TTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * * *
15678290 CATCCCGTCTCTTTGGTCGGCGTAGTGCCCGACCGCCCG-TC-CC-CTCGTTTCGTCGGTTGGCT
674 CATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCT
* ** *
15678352 TAGGCATACGGAGTTCATTCACAGTCTAAGATTAGACCAGA-TCGAGGGTTGCGGTAGAAGGATC
739 TAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACT-GAGGGTTGCGGTAGCAGGATC
** * *
15678416 AACAGCATGCAGA-GGGGACCCGATCGATCCCTGGCTTGCGCATCCCGCCCCTCTGGCCGGCTGA
803 GGCAGCACGCAGAGGGGGACCCGATCGATCCC-GGCTTGCGCATCCCTCCCCTCTGGCCGGCTGA
15678480 G
867 G
* * ** * *
15678481 CCCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATATAGAGTTAATTCCCAGTCTAAGCGTACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
*** * *
15678546 GAGTTCATTCCCAGTCTAAGATCGGATCGGAACGAAGGTTGCAATAGCACATACTGGGCTCAGGC
63 -AG---A---CC-G-----GA-C---T--G-A-G--GGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
15678611 ATGTGTTGGTGCCGCATTTTTCTTCGTCGGGGCACCATCGCTGGAGCATCGTCGGAGAACCTAAC
105 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT---T---GCA---TCGGAGAACCTGAC
* * ** *
15678676 CGGCGGCATTGAGGTTCGGGTGATCGGGGGGGCC-GGGGGGTGTGCGCACATGATGTGCAATGGG
161 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
* * *
15678740 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATTAAACCTCGAGAACTCACTCCTCCT
226 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCT
* * * *
15678805 TAAAGAGCATTTGAGATTTTACAGTTTTGCTGGCAGTAGCAATTAAAGTGTTTGAAATGGGGACA
291 TAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACA
*
15678870 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTTTTTGCAT
356 CTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA--TTTTTTTGTGCAT
* *
15678935 GCCAACAAAAATACAAGGATCAAGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAATTTTT
419 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * * *
15679000 AAAAAATTTAGAACTGCAAAGAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
484 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
15679065 GAAACTTCATGTGAAGTCTTAAGGGGCCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
549 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* ** * * ** *
15679130 ATGCAGAAATACAAAGATGCTACCTAAACTCACCTACCACAATATC-ATCCACGGCTTACGCATC
614 ACGCAGAAATATGAAGATG-TGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATC
* * * *
15679194 CC-ACTCTCTGGTCGACGTAGTGCCCGCCTGCCCG--C-CCGCTCGTTTCGTCGGTTGGCTTAGG
678 CCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGG
* * * ** *
15679255 CATACGAAGTTCATTCCTAGTCTAAGATCGGACCGGACTGAGGGTTGCGACAGCAGGATCGACAG
743 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAG
* * * *
15679320 CACGTAG-GGGGGAACCCGA-CGAATCCCTGGCTTGTGCAT-CCTGCCCCTCTAGTCGGCTGAG
808 CACGCAGAGGGGG-ACCCGATCG-ATCCC-GGCTTGCGCATCCCT-CCCCTCTGGCCGGCTGAG
* *
15679381 CGCCCGCATGCTCATTTCGTGGGTTGACTTAGGCATACAGAGTTCATTCCCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGT-GG--G---T-----T---GA---C-TT---AG-----GCATACG
* * * * *
15679446 GAGTTCATTCCCAGTCTAAGATCAGACTGGACTGAGGGTTGCGGTAGTACATGCTGGGTTCAGGC
40 GAGTTCATTCCCAGTCTAAGATCAGACCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * * * * ** *
15679511 ATGTTCTGGTGCCGTATTTTTCTTCGTCGGTGCACCA-T-CGTCGAAGAATTTGACCGACGGCAT
105 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATTGCATCGGAGAACCTGACCGGCGGCAT
* * * * * *
15679574 TAGGGTTCCAACGATCGGGGGGGCCGGGGGGAGCTTTTCGCACATAATGTGTGATGGGTGCTGGT
170 TGGGGTTCCGACGATCGGGGGGGCCGGGGGG-G-TGTGCGCACATGATGTGCGATGGGTGCTGGT
* * * *
15679639 ACTTGGCCCTCATATTGGCCACCTATCCCTCATCAAACCTCAAAAACTCACACCCCCTTAAAGAG
233 ACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAG
*
15679704 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAG-GCTCTGAATTGGGGACACTTTTT
298 CATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTG-TCTGAAATGGGGACACTTTTT
* *
15679768 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTAAGCTGAATTTTTTTGTGCATGCCAAAAA
362 TCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACA
* * *
15679833 AAAATACAAGGATCACGTCCACAAAGTTTGGGGCCAAAGCTCCTTCC-AAAACAATTTTAAAAAA
426 AAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAA
* *
15679897 TCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACT
490 TCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACT
* * * *
15679962 TCAGGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGAATGGAG
555 TCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAG
*
15680027 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGACTTGCAG-ATCCCGTCT
620 AAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGC-GCATCCCGTCT
* *** * * * *
15680091 CTTTGGCTAACGTAGTGCCCGCCCGCTCGTCCGCTCGCTCATTTCGTCGGTTGGCTTAGGCATAT
684 CTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATAC
* * * * * *
15680156 GGAGTTTATTCCCAGTCTAAGATCGGACCGGATTGAGGGTTGCGGTAGTAGGATTGGCAGCACAC
748 GGAGTTCATTCCCAGTCTAAGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGC
* * * * * *
15680221 AGAGGGGAACCCGATCGATCCGTGGCTTGCACATCCCGCCCGTCTGGCCGACTGAG
813 AGAGGGGGACCCGATCGATCC-CGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
* * * * * *
15680277 CGCCTGCGCGCTCGTTTCATAGGTTGACTTAGGCATACGGAGTTCATTTCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
** * * * *
15680342 CCGGA-TCGAGGGTTGCAACAGCACATGTTAGGCTTGGGCATGTGCTGGTGCTGCATTTTTCTTC
66 CCGGACT-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTC
* * *
15680406 GTCGGGGCACCATCGCCGGAGCATCGTCGAAGAACCTGACCGACGGCATTGGGGTTCC-AGTGAT
130 GTCGGGGCACCAT------TGCATCG--G-AGAACCTGACCGGCGGCATTGGGGTTCCGA-CGAT
* * *
15680470 CCGGGGAGCC-GAGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
185 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
15680534 GTCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
250 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
15680599 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
315 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
15680664 TTGTACACTTCGAGTTTTAAACTGAATTTTTTTGTGCATGCCAA-AAAAATACAAGGATCGCGTC
380 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTC
* * * * *
15680728 TACAAAGTTTGGTGCCAAAACTCCTTCTGAAAAAA-TTAAAAAAATCTCGAACCGCAAAAAGTTT
445 TACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTT
*
15680792 CAAAAATCGTGAAAAATAGAAAATGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
510 CAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGA
* *
15680857 CCATTGTATGAATTTACAAGCCATAAAAATGACATTGGCATGCAGAAATATGAAGATGTGCCTAA
575 CCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAA
* *
15680922 ACCCACCTACCACCCTATCGATCCAC-ACTTGCGCATCCCGTCTCTCTGGCCGACGTAGTGCCCG
640 ACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCG
** * * * *
15680986 CCCGCCCATCCGCTCGCTCGTTTCATCGTTTGGCTTAGGCATATGGAGTTCATTCTCAGTCTAAG
705 CCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAG
** * * * * * *
15681051 ATCGGATTAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACACAGAGGGGAACCCGACCGATCC
769 ATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC
* * *
15681116 GTGGCTTGCGCATCCCTCCCGTCTAGCCGGCTGAG
834 -CGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
* * *
15681151 CGCCCGCACGCTCATTTTGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * **
15681216 CCGGACCGAGGGTTGTGATAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
66 CCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
** * **
15681281 TTAGGGCACCATTGTCGGAGCATCGCCGGAGAACCTGACCGACGGCATTGGGGTTCCGGTGATCG
131 TCGGGGCACCA-T-T----GCAT---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* * *
15681346 GGGGAGCC-GGGGGGTGTGCACACATGATGTGCAATGGGTGCTGGTACTTGGCCCTTATATTGGC
187 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
*
15681410 CCCCTATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
252 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
*
15681475 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATTGGGACACTTTTTTCAAATGGTCACAAAATCTT
317 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
* * * * * *
15681540 GTACACTTCGATTTTTTTGCTGAATTTTTTT-TGCGTGCCAAAAAAAATACAAGGATCATGTCCA
382 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * *
15681604 CCAAGTTTGGGGCCAAAAGTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCATAAAAAGTTTTA
447 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCA
* * * * **
15681669 AAAATCGTGAAAAATAGAAAACTACTCGTCCTGCCATGAAACTTCAGGTGAAGGCTTAAGTTACC
512 AAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACC
* * * *
15681734 AATGTATGAATTTACAAGCCATTAAATTGGCATTGGCATGCCA-AAATATGAAGATGTGCCTAAA
577 ATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACG-CAGAAATATGAAGATGTGCCTAAA
* * * * * * **
15681798 CCCACGTAACACCCTATCGATCCATGGCTTGCGCATCCCGTCTATTTGGCTGATGTAGTGCCCGC
641 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * * * * *
15681863 CCGCTCGTCCACTCGCTCATTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCTAGTCTAAGA
706 CCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGA
* * * * * *
15681928 TCAGACTAGACTGAGGGTTGCGGTAGTAGGATCGACAGCACACAGAGGGGAACCCGATCGATCCG
770 TCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCC-
* * * * *
15681993 CGGCTTGCACATCCCACCCGTCTAGCCGACTGAG
834 CGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
* * * *
15682027 CGCCCGCGCGCTCATTTCATAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * * *
15682092 CCGGA-TCGAGGGTTGCAAG-AGCACAAGTTAGGCTCGGGCATGTGCTGGTGCCGTATTTTTCTT
66 CCGGACT-GAGGGTTGC-GGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTT
* * * * **
15682155 CGTCGGGGCACCATCGCCGGAGCATCGCCGGAGAACCTGACTGACGGCATTGGGGTTCTGGTGAT
129 CGTCGGGGCACCAT------TGCAT---CGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGAT
* * *
15682220 CGGGGGAGCCGAGGGGGTGTGCGCACATGATGTGTGATGGGTGCTGGTACTTGGCCCTTATATTG
185 CGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTG
* *
15682285 GCCCCCCATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
250 GCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAG
*
15682350 GTTTGCTGCCAATAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
315 GTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATC
* * *
15682415 TTGTACACTTCGAGTTTTAAGCTGAATTTTTTTGTGCATGCCAAAAAAAAATACAAGGATTACGT
380 TTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCC-AACAAAAATACAAGGATCACGT
* * * *
15682480 CCACAAAGTTTGGGGCCAAAGCTCCTTCC-AAAACAATTTTAAAAAATCTCGAACCGCAAAAAGT
444 CTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAA-AATTTTAAAAAATCTCGAACCGTAAAAAGT
*
15682544 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCATGCCATGAAACTTCACGTGAAGGCTTAAGG
508 TTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGG
* *
15682609 GACCATTGTATGATTTTACAAGCCATAAAAATGGCATTGGCATGCAGAAATATGAAGATGTGCCT
573 GACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCT
* * * ** *
15682674 AAACCCACCTACCACCCTATCGATCCACGACTTACCCATCCCGTCTCTCTGGTTGACGTAGTGCC
638 AAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCC
* * *
15682739 CGCCCGCCTGTCCGCTCGCTCGTTTCGTCGGTTGGCTTAGGCATATGGAGTTCATTCCCAGTCTA
703 CGCCCGCCCGCCCGC-CGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTA
** * * * * * *
15682804 AGATTAGACCGGACTGAGGGTTGCGGCAGCAGGATCGGCAGCACACAGAAGGGAACCCGACCGAT
767 AGATCGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGAT
* * * *
15682869 CCGCGACTTGCGCATCTCGCCCGTCTGGCCGGCTGAG
832 CC-CGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
* * * *
15682906 CGCCTGCACGCTCATTTCGTAGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
* * * *
15682971 CCGGACTGAGGGTTGCGACAGCACATGCTGGGCTCGAGCATATGCTGGTGCCGTATTTTTCTTCG
66 CCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
* * * *
15683036 TCGGGGCACCATCGCCGGAGCATCGTCGGAGAACCTGACCGACGGCATTGGGGTTCTGGCGATCG
131 TCGGGGCACCAT------TGCA---TCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCG
* ** * *
15683101 GGGGAGCC-ATGGGGTGTGCGCACATGATCTGCGATGGGTGCTGGTACTTTGCCCTTATATTGGC
187 GGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGC
* * *
15683165 CCCCTATCCCTCATCAAACCTCGAGCACTCAGACCCTCTTAAAGAGCATTTGAGATTTTACAGGT
252 CCCCTATCCCTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGT
* * **
15683230 TTGCTACCAGTAGCCGTTAAAGTGTCTGAAATGGGGACACTTTTTTTGAATGGTCACAAAATCTT
317 TTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTT
** *
15683295 GTACACTAGGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATGCAAGGATCACGTCTA
382 GTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTA
* * * *
15683360 CCAAGTTTGGGGCCAAAACTCCTTCTGAACAAATTTTAAAAAAATCTTGAACCGTAAAAAGTTTT
447 CCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT-AAAAAATCTCGAACCGTAAAAAGTTTC
* ** * *
15683425 GAAAATTATGAAAAATAGAGAACGAGTCGTCTTGCCATGAAACTTCACGGGAAGGCTTAAGGGAC
511 AAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGAC
*
15683490 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGGAGATGTGCCTAAA
576 CATTGTATGAATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAA
* * * * *
15683555 CCCACCTTCCACCCTATCGATCCACGGCTTGCACATTCCGTCTCTCTGCCCAGCGTAGTGCCCGC
641 CCCACCTACCACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGC
* * *
15683620 CCACCCG-CC-CCGTTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCCAAGAT
706 CCGCCCGCCCGCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGAT
* *** * * * * * * *
15683683 CGAATTGGATTGAGGGTTGCGATAGCAGGATGGGCAGCATGCATAGGGGGA-CTGAGTTGATCCC
771 CGGACCAGACTGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGA-TCGAT-CC
* * * * *
15683747 CGACTTGCACATCCCACCCCTCTGGCCGGTTGAA
834 CGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
* * *
15683781 CGCCCACACGCTCGTTTCGTGGGTTGTCTTAGGCATACGGAGTTCATTCGCAGTCTAAGCATACG
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAG-AT-C-
* * * * *
15683846 GAGTTCATTCCCAGTCTAATATCAGACCGGATCGAGGGTTACAGCAGCACATGCTGAGCTTGAGC
63 -AG---A---CC-G----------GA-C---T-GAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* *
15683911 ATGTGCTGGTGCCGCATTTTTCTTCGTCGTGGCACCATTGCCGGAGCATCACCGAAGAACCTGAC
105 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCATT------GCAT---CGGAGAACCTGAC
* * * * * * *
15683976 CAGTGG-ATATGGGGTTTCGACGATCGAGGGAGCCGAGGGGGGTGTGCACACATGATGTGTGATG
161 CGGCGGCAT-TGGGGTTCCGACGATCGGGGGGGCCG-GGGGGGTGTGCGCACATGATGTGCGATG
* *
15684040 GGTGCTGGTACCTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACACCCC
224 GGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACACCCC
*
15684105 CTTAAAGAGCATTTGAGATTTAACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
289 CTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATGGGGA
* * * *
15684170 CATTTTTTTCAAATGGTCACAAAATCTTGTACACTTTGATTTTTTAGCTGAATTTTTTTGTGCGT
354 CACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTTGTGCAT
* * *
15684235 GCCAAAAAAAATACAAGGATCACGTTTACCAAGTTTGGGGCCAAAAGTCCTTCCGAAAAAATTTT
419 GCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCCGAAAAAATTTT
* * * *
15684300 AAAAAATCCCGAACCGTAAAAAGTTTTAAAAATCGTGAAAAATAAAAAACGAGTCGTCTTGTCAT
484 AAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGCCAT
* * *
15684365 GCAACTTCACATGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTCGC
549 GAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATTGGC
* * * *
15684430 ACGTAGAAATATGAAGATGTGCCGAAACCCACCTACCACCCTATCGATCCATGGCTTGCACATCC
614 ACGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCATCC
* * * *
15684495 CGTCTCTCTGGCCGGCGTAGTGCCCACCCGTCCGCCCGCCCGTTCCTTTCGTCGGTTGGCTTAGG
679 CGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCG-CCGCTCGTTTCGTCGGTTGGCTTAGG
* * * * * **
15684560 CATACGAAGTTCATTCCCAGCCTAAGATCGAACC-GCACTGAGGGTTACGGTAGTAGGATCGATA
743 CATACGGAGTTCATTCCCAGTCTAAGATCGGACCAG-ACTGAGGGTTGCGGTAGCAGGATCGGCA
* * * * * **
15684624 GCACACAGAGGGGGACCCGACCGATCCCCGACTTACGCATCCCACCCCTCTGGTTGGCTGAG
807 GCACGCAGAGGGGGACCCGATCGAT-CCCGGCTTGCGCATCCCTCCCCTCTGGCCGGCTGAG
* * *
15684686 TGCCCGCACGCTCATTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCTCAGTCTAAGCATATA
1 CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTC-C---C--AG--TCTA
* * *
15684751 GAGTTCATTCCCAGACTAAGATCGGACCAGACCGAGGGTTGCGACAGCACATGCTGGGCTCGAGC
58 -AG---A-T--CAGAC------C-G----GACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGC
* * ** * *
15684816 ATGTGCCGGTGTCGCATTTTTCTTCACCAGGGCACCATCGTCGGAGCATCGCCGGAGAACTTGAC
105 ATGTGCTGGTGCCGCATTTTTCTTCGTCGGGGCACCAT--T----GCAT---CGGAGAACCTGAC
* * * * *
15684881 CGACGGCATTTGGGTTCCGACGATC-GGGGGG-CTGGGGGGTATGCACACATGATGTGCGATGGG
161 CGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGCGATGGG
*
15684944 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCTAGAACTCACA
226 TGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCGAGAACTCACA
15685003 TCAAACCTCG
Statistics
Matches: 11806, Mismatches: 1332, Indels: 852
0.84 0.10 0.06
Matches are distributed among these distances:
844 40 0.00
845 82 0.01
846 185 0.02
851 1 0.00
852 6 0.00
854 2 0.00
855 9 0.00
856 112 0.01
859 193 0.02
860 5 0.00
861 351 0.03
862 30 0.00
863 2 0.00
864 2 0.00
865 1 0.00
866 4 0.00
867 309 0.03
868 767 0.06
869 8 0.00
870 97 0.01
871 2 0.00
872 3 0.00
873 108 0.01
874 618 0.05
875 529 0.04
876 545 0.05
877 274 0.02
878 650 0.06
879 584 0.05
880 8 0.00
881 36 0.00
882 10 0.00
883 7 0.00
884 16 0.00
885 107 0.01
886 38 0.00
887 132 0.01
888 208 0.02
889 303 0.03
890 552 0.05
891 275 0.02
892 418 0.04
893 241 0.02
894 680 0.06
895 146 0.01
896 373 0.03
897 151 0.01
898 46 0.00
899 705 0.06
900 228 0.02
901 127 0.01
902 681 0.06
903 388 0.03
904 30 0.00
905 267 0.02
906 8 0.00
907 3 0.00
908 2 0.00
909 4 0.00
910 8 0.00
911 7 0.00
912 2 0.00
913 7 0.00
914 6 0.00
915 4 0.00
916 7 0.00
917 2 0.00
918 4 0.00
919 1 0.00
920 19 0.00
921 2 0.00
922 2 0.00
924 1 0.00
925 1 0.00
926 24 0.00
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.25
Consensus pattern (867 bp):
CGCCCGCACGCTCGTTTCGTGGGTTGACTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAGA
CCGGACTGAGGGTTGCGGCAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCG
TCGGGGCACCATTGCATCGGAGAACCTGACCGGCGGCATTGGGGTTCCGACGATCGGGGGGGCCG
GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCC
CTCATCAAACCTCGAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCA
GTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTC
GAGTTTTTAGCTGAATTTTTTTGTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTG
GGGCCAAAACTCCTTCCGAAAAAATTTTAAAAAATCTCGAACCGTAAAAAGTTTCAAAAATCGTG
AAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGA
ATTTACAAGCCATAAAAATGGCATTGGCACGCAGAAATATGAAGATGTGCCTAAACCCACCTACC
ACCCTATCGATCCACGGCTTGCGCATCCCGTCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC
GCCGCTCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCGGACCAGAC
TGAGGGTTGCGGTAGCAGGATCGGCAGCACGCAGAGGGGGACCCGATCGATCCCGGCTTGCGCAT
CCCTCCCCTCTGGCCGGCTGAG
Found at i:15674110 original size:26 final size:26
Alignment explanation
Indices: 15674071--15674123 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
15674061 GTTGACTTAG
* *
15674071 GCATACGGAATTCATTCCCGGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
* *
15674097 GCATACAGAGTTCATTGCCAGTCTAA
1 GCATACAGAATTCATTCCCAGTCTAA
15674123 G
1 G
15674124 ATTGGATCGG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.21, T:0.26
Consensus pattern (26 bp):
GCATACAGAATTCATTCCCAGTCTAA
Found at i:15675458 original size:25 final size:26
Alignment explanation
Indices: 15675424--15675477 Score: 74
Period size: 26 Copynumber: 2.1 Consensus size: 26
15675414 GTTTGGGGCT
15675424 AAAACACCT-ACCGAAAAAATTTTAA
1 AAAACACCTAACCGAAAAAATTTTAA
* * *
15675449 AAAATACCTAACCGAAAAAGTTTTCA
1 AAAACACCTAACCGAAAAAATTTTAA
15675475 AAA
1 AAA
15675478 TCGTGAAAAA
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
25 8 0.32
26 17 0.68
ACGTcount: A:0.56, C:0.19, G:0.06, T:0.20
Consensus pattern (26 bp):
AAAACACCTAACCGAAAAAATTTTAA
Found at i:15677640 original size:26 final size:26
Alignment explanation
Indices: 15677611--15677663 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15677601 GTTGACTTAG
*
15677611 GCATACGGAGCTCATTGCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
*
15677637 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGCTCATTCCCAGTCTAA
15677663 G
1 G
15677664 ATCGGATTGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (26 bp):
GCATACGGAGCTCATTCCCAGTCTAA
Found at i:15679442 original size:26 final size:26
Alignment explanation
Indices: 15679413--15679465 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15679403 GTTGACTTAG
15679413 GCATACAGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
*
15679439 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAGTCTAA
15679465 G
1 G
15679466 ATCAGACTGG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAGTCTAA
Found at i:15683843 original size:26 final size:26
Alignment explanation
Indices: 15683813--15683864 Score: 95
Period size: 26 Copynumber: 2.0 Consensus size: 26
15683803 GTTGTCTTAG
*
15683813 GCATACGGAGTTCATTCGCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15683839 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15683865 TATCAGACCG
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.27, C:0.25, G:0.21, T:0.27
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15686442 original size:26 final size:26
Alignment explanation
Indices: 15686406--15686476 Score: 115
Period size: 26 Copynumber: 2.7 Consensus size: 26
15686396 AGGCAAACAG
15686406 AGTTCATTCCCAGTCTAAGCATACGA
1 AGTTCATTCCCAGTCTAAGCATACGA
* * *
15686432 AGTTCATTCCCAGTCTAATCATATGG
1 AGTTCATTCCCAGTCTAAGCATACGA
15686458 AGTTCATTCCCAGTCTAAG
1 AGTTCATTCCCAGTCTAAG
15686477 ATCAAACTGG
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 41 1.00
ACGTcount: A:0.28, C:0.25, G:0.15, T:0.31
Consensus pattern (26 bp):
AGTTCATTCCCAGTCTAAGCATACGA
Found at i:15688261 original size:26 final size:26
Alignment explanation
Indices: 15688232--15688284 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15688222 GTTTACTTAG
*
15688232 GCATACGGAGTTCATTCCTAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15688258 GCATATGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15688284 G
1 G
15688285 ATCGGATCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15689158 original size:26 final size:26
Alignment explanation
Indices: 15689117--15689174 Score: 89
Period size: 26 Copynumber: 2.2 Consensus size: 26
15689107 CGGGGGTTGA
*
15689117 CTAAGGCATACAGAGTTCATTCCCAGT
1 CTAA-GCATACAGAGTTCATTCCCAAT
*
15689144 CTAAGCATACGGAGTTCATTCCCAAT
1 CTAAGCATACAGAGTTCATTCCCAAT
15689170 CTAAG
1 CTAAG
15689175 ATCGGACTGG
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
26 25 0.86
27 4 0.14
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
CTAAGCATACAGAGTTCATTCCCAAT
Found at i:15691233 original size:875 final size:873
Alignment explanation
Indices: 15686451--15691800 Score: 6846
Period size: 874 Copynumber: 6.0 Consensus size: 873
15686441 CCAGTCTAAT
* ** * *
15686451 CATATGGAGTTCATTCCCAGTCTAAGATCAAACT-GGACCAAGGGTTGCGACAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTCAGACCAAGGGTTACGACAGCACATGCTGGG
* * * * *
15686515 CTTGGGCATGTGCTGGTGCCACATTTTT-TTCATTGGGGCACCATCACCGGAGCATCGTCGGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGT-AGAGA
* * ** * *
15686579 ACCTAACCGACGGCATCGGGGTT-TCGATGATC-TAGGTGCC-CGGGGGTGTGCGCACATGATGT
130 ACCTGACCGACGGCATTGGGGTTCT-GATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGT
* **
15686641 GCGATGGGTGCTGGTACTTGGCCCTTCTATTGGCCCCCTATCCCTCATCAAACCTCGGGAACTCA
194 GCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCA
*
15686706 CACCCCCTTAAAGAGCATTTTAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
259 CACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAA
15686771 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTT
324 TGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAA-TTTTTT
* * * * **
15686836 GTGCATGCCAACAAAAATA-AATGGATCACTTCTACCAAGTTT-TGGCCAAAACTCCTTCCAAAA
388 GTGCATGACAAAAAAAATACAA-GGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAA
* *** *
15686899 AAATTTTAAAAAATCTCAAACTATAAAAAGTTTTG-AAAATCGTGAAAAATAG-AAACGAGTTGT
452 AAATTTTAAAAAATCCCAAACCGCAAAAAG-TTTGAAAAATCGTGAAAAATAGAAAACGAGTCGT
*
15686962 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTATATGAATTTACAAGCCATAAAAATG
516 CTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATG
* ** *
15687027 GCATTGGCACCCAA-AAATATGAAGATGTGAGTAAACCCACCTACCACCCTATCGATCCATGGCT
581 GCATTGGCA-CAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * * * * * *
15687091 TGCGCATCCCATATTTCTGGCCGGCGTAGTACCTGTCCGCCCGCCTGCTCGTTCGCTCATTTCAT
645 TGCGCATCCCATCTCTCTGGCCGGCGTAG----TGCCCGCCCGCCCGCCCATTCG----TTTCGT
* * *
15687156 CGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATC-GAACCAGATCGAGGGTTGTGGT
702 CGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG-ACCAGACCGAGGGTTGCGGC
* * ** * * **
15687220 AGCAGCATCGGCAGCACATAGAGGGGGACCCGACCGATCCCCGACTTGCGCATCCTGCCCCTCT-
766 AGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTA
* * * *
15687284 GCCTGGCTGAGCACCCGTACGCTCGTTTCGTGGGTT-AGCTTAGT
831 GCC-GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGA-CTTAGG
* *
15687328 CATTCGGAGTTCATTCCTAGTCTAAGCATACGAGTTCATTCCTAGTCTAAGATCGGATCGGACCG
1 CATACGGAGTTCATTCCCAGTCTAAG-AT-CG-G---A---C---TC--AGA-C----C--A---
* ** * * *
15687393 AGGGTTGCGGTAGCACATACTGGGCACGGGCATGTGCTAGTGCCGCATTTTTCTTCA-TCGGGGC
42 AGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACT-GGGGC
* * * * * *
15687457 ACCATTGCCGGAGCATCGTAGGAGAACCTGATCGATGACATTGGGGTTCCGACTGATCAGGGGGG
106 ACCATCGCCGGAGCATCGTA-GAGAACCTGACCGACGGCATTGGGGTTCTGA-TGATCGGGGGGG
* * * * * *
15687522 CCGAGGGGGTGTGTGCACATGATGTGAGAAGGGTGCTGGTACTTGGCCCTTTTATTGGCCCCATA
169 CCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
* * *
15687587 TCCCTCATCAAACCTCGAGAACTCTCACCCCCTTAAATAGCATTTGAGATTTTACAGGTTTGCTG
234 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
*
15687652 CCAGTAGCCATTAAAGTGTCTGAAATGGGGTCACTTTTTTCAAATGGTCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * * *
15687717 TTCGAGTTTTTAGTTGAATTTTTTTATGCATG-CGAACAAAAATACAAGGATCATGTCTACCAAG
364 TTCGAGTTTTTAGCTGAA-TTTTTTGTGCATGAC-AAAAAAAATACAAGGATCACGTCTACCAAG
* * * *
15687781 TTTGGGG-CAAGAAATCCTTCTGAAAAAATTTTAAAAAATCTCGAACTGCAAAAATGTTTG-AAA
427 TTTGGGGCCAA-AACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAA-GTTTGAAAA
15687844 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
490 ATCGTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATT
* * * *
15687909 GTATGAATTTACAAGCCATAAAAATGGTATTAGCACACAGAAATATGAAGATGTGCCTGAACCCA
555 GTATGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGATGTGCCTAAACCCA
* * *
15687974 CCTACCACCCTATCGATCGACGGCTTGCGTATCCCGTCTCTCTGGCCGGCGTAGTGCCCTCCCGC
620 CCTACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTG----CCCGC
* * *
15688039 CCGCCCGCCCGTTCGTTTCGTCGGTTCGCTTAGGCATACGGAGTTCATTCCCAGTCTAAGATCAG
681 CCGCCCGCCCATTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAG
* * * * * * *
15688104 ACTAGACCGAGGGTTGCGGCAGCAAGATCGGCAGCACGCAGAGGGGTACCCGGTCAGGTCCCCGG
746 ACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCC-GACCGATCCCCGG
** * * * * * * * *
15688169 CTTGTGCAACCTACCCCTCTGGCCGGA-TGAGCGCCTGAACGCTCGTTCCATGGGTTTACTTAGG
810 CTTGCACATCCCACCCCTCTAGCC-GACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
* *
15688233 CATACGGAGTTCATTCCTAGTCTAAGCATATGGAGTTCATTCCCAGTCTAAGATCGGATCGGACC
1 CATACGGAGTTCATTCCCAGTCTAAG---ATCG-G---A----C--TC--AGA-C----C--A--
** * * * * * **
15688298 GAGGGTTACGGTAGCACATACTGGGCTTGGGCATGTCCTGGTGCCACATTTTTCTCCACCAGGGC
42 -AGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGC
* * * *
15688363 ACCATCACCGGAGCATCGTCGGAGAAGCTGACC-AGCGGCATTGGGGTT-TCGACGATCGGGGGG
106 ACCATCGCCGGAGCATCGT-AGAGAACCTGACCGA-CGGCATTGGGGTTCT-GATGATCGGGGGG
*
15688426 GTC-GGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
168 GCCGGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCT
* * *
15688490 ATCCCTCATCAAACCTCAAGAACTCACATCCCCTTAAAGAGCAATTGAGATTTTACAAGTTTGCT
233 ATCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCT
* *
15688555 GTCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTTAC-AAATCTTGTACA
298 GCCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACA
* *
15688619 CTTCGAGTTTTTAGCTGAATTTTTTTTGCATGAAAAAAAAAATACAAGGATCACGTCTACCAAGT
363 CTTCGAGTTTTTAGCTGAATTTTTTGTGCATGACAAAAAAAATACAAGGATCACGTCTACCAAGT
* ** *
15688684 TTGGGGCAAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCATAAAAAGTTTCAAAAATC
428 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTGAAAAATC
* *
15688749 GTG-AAAA-A-AAAACGAGTCGTCTTGCCATGAAACTTTATGTGAAGGCTTAAGGGACCATTGTA
493 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
* * *
15688811 TGAATTTACAAGCCAGAAAAATGGCATTGGCA-AGCAGAAATATGAAGATGTGCCTAATCCCACC
558 TGAATTTACAAGCCATAAAAATGGCATTGGCACA-AAGAAATATGAAGATGTGCCTAAACCCACC
* * * *
15688875 TACCACCCTATCGATCCATGGCTTGCGCATCCCATCTCTCTGGCTGGCGTAGTGCCCGTCTGCCC
622 TACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCC
* * * **
15688940 G--C--TCGTTTCGTCGGTTGGCTTAGGCATACGGAGTTCATTTCCAGTCCAAGATTGGACCAGA
687 GCCCATTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGA
* ** * * * * * * *
15689001 CCGAGTGTTGCGATAGCAGGATTGGCAACATGCAGAGGGGGACCCGATCGATCCCTGACTTGCAC
752 CCGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCAC
** * * * * * *
15689066 ATCCTGCCCCTCTGGTCGGCTGAGCGCCCGCACGCTCATTTCGGGGGTTGACTAAGG
817 ATCCCACCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
15689123 CATACAGAGTTCATTCCCAGTCTAAGCATACGGAGTTCATTCCCAATCTAAGATCGGACTGGACT
1 CATACGGAGTTCATTCCCAGTCTAAG-AT-C-G-G---A----C--TC--AGA-C---C---A--
* * * * *
15689188 GAGGGTTGCGACAGCACATGCTGGGCTTGGGCATGTCCTGGTGCCGTATTTTTCTTCACCGGGGC
42 -AGGGTTACGACAGCACATGCTGGGCTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGC
* * ** * **
15689253 ACCATCGTCGGAGCATCGCCATTGAACCTGACCGACGGCATTGGGGTTCCGGCGATC-GGGGGGC
106 ACCATCGCCGGAGCATCG-TAGAGAACCTGACCGACGGCATTGGGGTTCTGATGATCGGGGGGGC
* **
15689317 CGGGGGGGGTTTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTTTCCCCCTA
170 C-GGGGGGGTGTGCGCACATGATGTGCGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTA
15689382 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
234 TCCCTCATCAAACCTCAAGAACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTG
15689447 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
299 CCAGTAGCCATTAAAGTGTCTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACAC
* * *
15689512 TTCGAGTTTTTTGGTGAATGTTTTTGTGCATGACAAAAAAAATACAAGGATCACGTCTACTAAGT
364 TTCGAGTTTTTAGCTGAAT-TTTTTGTGCATGACAAAAAAAATACAAGGATCACGTCTACCAAGT
* *
15689577 TTGGGGCCATAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAATAGTTTGAAAAATC
428 TTGGGGCCAAAACTCCTTCTGAAAAAATTTTAAAAAATCCCAAACCGCAAAAAGTTTGAAAAATC
* *
15689642 GTGAAAAATAGAAAACGAGTCCTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTA
493 GTGAAAAATAGAAAACGAGTCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTA
15689707 TGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGATGTGCCTAAACCCACCT
558 TGAATTTACAAGCCATAAAAATGGCATTGGCACAAAGAAATATGAAGATGTGCCTAAACCCACCT
* * *
15689772 ACCACCCTATCGATCCACGGCTTGCGCATCCTATCTCTCTGGCCGGTGTAGTGCCCGCCCACCCG
623 ACCACCCTATCGATCCACGGCTTGCGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCG
* * *
15689837 CCCATTCGTTTCGTCGGATGGCTTAGGCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGAC
688 CCCATTCGTTTCGTCGGTTGGCTTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAC
* * * *
15689902 TGGGGGTTGTGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCACA
753 CGAGGGTTGCGGCAGCAGGATCGACAGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACA
*
15689967 TCCCACCCCTCTAGCCGACTGAGCGCCCGGACGCTCGTTTCGTGGGTTGACTTAGG
818 TCCCACCCCTCTAGCCGACTGAGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
15690023 CATACGGAGTTTATTCCCAGTCTAAGATCGGACTC-GACCAAGGGTTACGACAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTCAGACCAAGGGTTACGACAGCACATGCTGGG
* * *
15690087 CTCGGGCATGTGCTGGTGCTGCATTTTTGTTCACTGGGGCACCATCGCCGAAGCATCGCTAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCG-TAGAGA
15690152 ACCTGACCGACGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
15690217 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
* * * *
15690282 ATCCCCTTAAAGAGCAATTGAGATTTTACAAGTTTGCTGTCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
* * *
15690347 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCAAGTTTTTTGGTGAATGTTTTTG
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT-TTTTTG
* *
15690412 TGCATGACAAAAAAAATACAAGGATCACGTCTACTAAGTTTGGGGCCATAACTCCTTCTGAAAAA
389 TGCATGACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* *
15690477 ATTTTAAAAAATCCCAAACCGCAAATAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCCTCTT
454 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15690542 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTCTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
15690607 TTGGCACAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
584 TTGGCACAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* * *
15690672 CATCCTATCTCTCTGGCCGGTGTAGTGCCCGCCCGCCCGCCCATTCGTTTCGTCGGATGGCTTAG
649 CATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCATTCGTTTCGTCGGTTGGCTTAG
* * * * *
15690737 GCATACAAAGTTCATTCCCAGTCTAAGATCAGACCGGACTGGGGGGTTGTGGCAGCAGGATCGAC
714 GCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGAC-CGAGGGTTGCGGCAGCAGGATCGAC
*
15690802 AGCACGCAGAGGGGGACCCAACCGATCCCCGGCTTGCACATCCCACCCCTCTAGCCGACTGAGCG
778 AGCACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTAGCCGACTGAGCG
*
15690867 CCCGGACGCTCGTTTCGTGGGTTGACTTAGG
843 CCCGCACGCTCGTTTCGTGGGTTGACTTAGG
*
15690898 CATACGGAGTTTATTCCCAGTCTAAGATCGGACTC-GACCAAGGGTTACGACAGCACATGCTGGG
1 CATACGGAGTTCATTCCCAGTCTAAGATCGGACTCAGACCAAGGGTTACGACAGCACATGCTGGG
* * *
15690962 CTCGGGCATGTGCTGGTGCTGCATTTTTGTTCACTGGGGCACCATCGCCGAAGCATCGCTAGAGA
66 CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCG-TAGAGA
15691027 ACCTGACCGACGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
130 ACCTGACCGACGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTG
*
15691092 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAATCCTCAAGAACTCAC
195 CGATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCAC
15691157 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
260 ACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAAT
*
15691222 GGGGACACTTTTTTGAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTT-T
325 GGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGT
* * * * * *
15691286 CCCATGCCAAAAAAAATACAAGGATCATGTCTACCAAGTTTAGGGCCAAATCTCCTTCCGAAAAA
390 -GCATGACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAA
* * * * *
15691351 ATTTTAAAAAATCTCGAACCGCAAAAAGTTTCAAAAATCGTGAAAAATAAAAAACAAGTCGTCTT
454 ATTTTAAAAAATCCCAAACCGCAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTT
*
15691416 GCCATGAAACTTCATGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
519 GCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCA
*** * * * *
15691481 TTGGCATGCAGAAATATAAAGATGTGCCTAAACTCACCTACCACCCTATCGATCCACGACTTGCT
584 TTGGCACAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCG
* ** * * *
15691546 TATCCTGTCTCTCTGGCAGGCGTAGTGCCTGCCCGCCCGCCCGCTCGATCGTTTCGTCGGTTGGC
649 CATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCC-AT---TCGTTTCGTCGGTTGGC
* * * *
15691611 TTAGGCATACGGAGTTCATTCCCAGTCTAAGATTAGACCGGACCGAGGGTTGCGGCAGTAGGATC
710 TTAGGCATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATC
* * * * * *
15691676 GACAGCAC-CTAGAGGTGGACCCGACTGATCTCCGGCTTGCACTTCTCGCCCCTCTAGCCGACTG
775 GACAGCACGC-AGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTAGCCGACTG
** *
15691740 AGCGCTTGCATGCTCGTTTCGTGGGTTGACTTAGG
839 AGCGCCCGCACGCTCGTTTCGTGGGTTGACTTAGG
15691775 CATACGGAGTTCATTCCCAGTCTAAG
1 CATACGGAGTTCATTCCCAGTCTAAG
15691801 CATACGTAGT
Statistics
Matches: 4020, Mismatches: 368, Indels: 170
0.88 0.08 0.04
Matches are distributed among these distances:
873 1 0.00
874 957 0.24
875 502 0.12
876 1 0.00
877 153 0.04
878 58 0.01
879 1 0.00
880 1 0.00
883 2 0.00
884 2 0.00
886 1 0.00
887 2 0.00
888 2 0.00
889 12 0.00
890 206 0.05
891 261 0.06
892 32 0.01
893 107 0.03
894 4 0.00
895 11 0.00
896 169 0.04
897 3 0.00
898 3 0.00
899 161 0.04
900 175 0.04
901 8 0.00
902 139 0.03
903 82 0.02
904 257 0.06
905 99 0.02
906 370 0.09
907 69 0.02
908 169 0.04
ACGTcount: A:0.26, C:0.25, G:0.24, T:0.26
Consensus pattern (873 bp):
CATACGGAGTTCATTCCCAGTCTAAGATCGGACTCAGACCAAGGGTTACGACAGCACATGCTGGG
CTCGGGCATGTGCTGGTGCCGCATTTTTCTTCACTGGGGCACCATCGCCGGAGCATCGTAGAGAA
CCTGACCGACGGCATTGGGGTTCTGATGATCGGGGGGGCCGGGGGGGTGTGCGCACATGATGTGC
GATGGGTGCTGGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAACTCACA
CCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTGAAATG
GGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAATTTTTTGTG
CATGACAAAAAAAATACAAGGATCACGTCTACCAAGTTTGGGGCCAAAACTCCTTCTGAAAAAAT
TTTAAAAAATCCCAAACCGCAAAAAGTTTGAAAAATCGTGAAAAATAGAAAACGAGTCGTCTTGC
CATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAAAATGGCATT
GGCACAAAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCTTGCGCA
TCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCGCCCGCCCATTCGTTTCGTCGGTTGGCTTAGGC
ATACAGAGTTCATTCCCAGTCTAAGATCAGACCAGACCGAGGGTTGCGGCAGCAGGATCGACAGC
ACGCAGAGGGGGACCCGACCGATCCCCGGCTTGCACATCCCACCCCTCTAGCCGACTGAGCGCCC
GCACGCTCGTTTCGTGGGTTGACTTAGG
Found at i:15691803 original size:26 final size:26
Alignment explanation
Indices: 15691774--15691825 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
15691764 GTTGACTTAG
*
15691774 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
* *
15691800 GCATACGTAGTTCATTCGCAATCTAA
1 GCATACGGAGTTCATTCCCAATCTAA
15691826 AATCGGATCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.29, C:0.25, G:0.17, T:0.29
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAATCTAA
Found at i:15692232 original size:26 final size:26
Alignment explanation
Indices: 15692203--15692255 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15692193 GTTGACTTAG
* *
15692203 GCATACGGAGTTCATTCTCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15692229 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15692255 G
1 G
15692256 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.32, C:0.25, G:0.15, T:0.28
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15692713 original size:26 final size:26
Alignment explanation
Indices: 15692666--15692722 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
15692656 CTGCTTTCGA
**
15692666 AAAAATTTTAAAAAATCCTGAACCAT
1 AAAAATTTTAAAAAATCCTGAAAAAT
*
15692692 AAAAATTTTCAAAAAA-CGTGAAAAAT
1 AAAAATTTT-AAAAAATCCTGAAAAAT
15692718 AAAAA
1 AAAAA
15692723 ACGAGCCATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 21 0.78
27 6 0.22
ACGTcount: A:0.61, C:0.11, G:0.05, T:0.23
Consensus pattern (26 bp):
AAAAATTTTAAAAAATCCTGAAAAAT
Found at i:15693129 original size:26 final size:26
Alignment explanation
Indices: 15693093--15693145 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
15693083 GTTGACTTCG
15693093 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
*
15693119 GCATACGGAGTTTATTCCCAGTCTAA
1 GCATACGGAGTTCATTCCCAGTCTAA
15693145 G
1 G
15693146 ATCGGACTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.26, C:0.25, G:0.21, T:0.28
Consensus pattern (26 bp):
GCATACGGAGTTCATTCCCAGTCTAA
Found at i:15696938 original size:719 final size:714
Alignment explanation
Indices: 15695552--15697044 Score: 2319
Period size: 719 Copynumber: 2.1 Consensus size: 714
15695542 CATTCCCAGT
* * * **
15695552 CTAA-GCAAACGGAGTTCATTCCCAGTCTAAGATCGGACCGGACCGAGTTTTACGACAGCACAAG
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACGACAGCACAAG
* * * *
15695616 CTGGCCTCGGGCATGTGCTGGTGCCGAATTTTTCTTCATCGGGGCACCATCGCTGGAGCATCACC
66 CTGGCCTCGGGCATGTGCTGCTGCCGAATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACC
* * *
15695681 GGAGAACCTGATCGACGGCATTGGGGTTCCGACGATCAAGGGGGCCAGGGGGTGTGCGCACATGA
131 GGAGAACCTGACCGACGACATTGGGGTTCCGACGATCAAGGGGGCCAGGGGGTGTGCGCAAATGA
* **
15695746 TGTGCGATGGGTGCTCGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTTGAGAAC
196 TGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
** * * *
15695811 TCACACCCCCTTTTAGAGCATTTGAGATTTTATAGGTTTGCTGCCAGTAGGCATTAAAGTGTTTG
261 TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
15695876 AAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGAAGAATTTT
326 AAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGAAGAATTTT
* * * *
15695941 TTTTTGCATGCCAACAAAAATACAAGGATCACGTCTACCAAGTTTGTGGCCAAAACTCCTTCCCA
391 TTTGTGCATCCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCCA
* * * * *
15696006 AAAAATTTTAAAAAATCCCGAACCGTAAAAAGTTTCAAAAATCGTGAAAAATAGAAAACGAGTTG
456 AAAAAGTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
15696071 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAACTTACAAGCCATAAAAAT
521 TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAACTTACAAGCCATAAAAAT
* *
15696136 GGCATTGGCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCATGGCT
586 GGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
* * ** *
15696201 TGCTCATCCCGTCTCTCTGGTCGGCGTAGTGCCCGCCTGCCCGGCCGCTTGCTCGTTTCGTCGGT
651 TGCTCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGGCCGCTTG--C--TTCATCGGT
15696266 TGG
712 TGG
* * * * * * *
15696269 CTTAGGCATATGGAGTTCATTCTCAGCCTAAGATAGGACCAGACCGAGGGTTGCGGCAGCACATG
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACGACAGCACAAG
*
15696334 CTGGGCTCGGGCATGTGCTGCTGCCGCAA-TTTTCTTCACCGGGGCACCATCACCGGAGCATCAC
66 CTGGCCTCGGGCATGTGCTGCTGCCG-AATTTTTCTTCACCGGGGCACCATCACCGGAGCATCAC
* *
15696398 CGGAGAACCTGACCGGCGACATTGGGGTTCCGACGATC-GGGGGGCCGAGGGGGGTGTGCGCAAA
130 CGGAGAACCTGACCGACGACATTGGGGTTCCGACGATCAAGGGGGCC-A-GGGGGTGTGCGCAAA
*
15696462 TGATGTGCGATGGGTGCTAGTACTTGGCCTTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
193 TGATGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAG
15696527 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
258 AACTCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGT
* **
15696592 CTGAAATGGGGACACTTTTTTCAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGCTGAAT
323 CTGAAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGAAGAAT
15696657 TTTTTTGTGCATCCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
388 TTTTTTGTGCATCCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTC
* *
15696722 CGAAAAAAGTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAATATCATGAAAAATAAAAAACGAG
453 CCAAAAAAGTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAG
* * *
15696787 TCGTTTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTATGAATTTACAAGCCATAAA
518 TCGTCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAACTTACAAGCCATAAA
* * *
15696852 AATGGCATTGCCATGGAGAAATATGAAGATGTGCCTAAACTCACCTACCACCCTATCGATTCACG
583 AATGGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACG
*
15696917 GCTTG-TGCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGTCCGCTTGCTTCATCGGT
648 GCTTGCT-CATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGGCCGCTTGCTTCATCGGT
15696981 TGG
712 TGG
* * * *
15696984 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATTGGATCAAACCAAGGGTTACGACAGCA
1 CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACGACAGCA
15697045 GGATCAGCAG
Statistics
Matches: 702, Mismatches: 69, Indels: 12
0.90 0.09 0.02
Matches are distributed among these distances:
715 62 0.09
717 11 0.02
718 142 0.20
719 487 0.69
ACGTcount: A:0.27, C:0.25, G:0.23, T:0.25
Consensus pattern (714 bp):
CTAAGGCATACGGAGTTCATTCCCAGTCTAAGATAGGACCAGACCGAGGGTTACGACAGCACAAG
CTGGCCTCGGGCATGTGCTGCTGCCGAATTTTTCTTCACCGGGGCACCATCACCGGAGCATCACC
GGAGAACCTGACCGACGACATTGGGGTTCCGACGATCAAGGGGGCCAGGGGGTGTGCGCAAATGA
TGTGCGATGGGTGCTAGTACTTGGCCCTTATATTGGCCCCCTATCCCTCATCAAACCTCAAGAAC
TCACACCCCCTTAAAGAGCATTTGAGATTTTACAGGTTTGCTGCCAGTAGCCATTAAAGTGTCTG
AAATGGGGACACTTTTTTAAAATGGTCACAAAATCTTGTACACTTCGAGTTTTTAGAAGAATTTT
TTTGTGCATCCCAACAAAAATACAAGGATCACATCTACCAAGTTTGGGGCCAAAACTCCTTCCCA
AAAAAGTTTAAAAAATCCCAAACCGTAAAAAGTTTCAAAAATCATGAAAAATAAAAAACGAGTCG
TCTTGCCATGAAACTTCACGTGAAGGCTTAAGGGACCATTGTACGAACTTACAAGCCATAAAAAT
GGCATTGCCATGCAGAAATATGAAGATGTGCCTAAACCCACCTACCACCCTATCGATCCACGGCT
TGCTCATCCCATCTCTCTGGCCGGCGTAGTGCCCGCCCACCCGGCCGCTTGCTTCATCGGTTGG
Found at i:15697184 original size:26 final size:26
Alignment explanation
Indices: 15697148--15697200 Score: 88
Period size: 26 Copynumber: 2.0 Consensus size: 26
15697138 GTTGACTTAG
* *
15697148 GCATACGGAGTTCATTCCCAGTCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15697174 GCATACAGAGTTCATTCCCAATCTAA
1 GCATACAGAGTTCATTCCCAATCTAA
15697200 G
1 G
15697201 ATCGGACCGG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 25 1.00
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.26
Consensus pattern (26 bp):
GCATACAGAGTTCATTCCCAATCTAA
Found at i:15697628 original size:17 final size:16
Alignment explanation
Indices: 15697587--15697628 Score: 57
Period size: 17 Copynumber: 2.6 Consensus size: 16
15697577 ATTTTTTACC
15697587 TTGTATTTTTTTTCTT
1 TTGTATTTTTTTTCTT
* *
15697603 TTTTCTTTTTTCTTCTT
1 TTGTATTTTTT-TTCTT
15697620 TTGTATTTT
1 TTGTATTTT
15697629 ATGTATTTTA
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 9 0.43
17 12 0.57
ACGTcount: A:0.05, C:0.10, G:0.05, T:0.81
Consensus pattern (16 bp):
TTGTATTTTTTTTCTT
Found at i:15697649 original size:3 final size:3
Alignment explanation
Indices: 15697623--15697775 Score: 50
Period size: 3 Copynumber: 47.3 Consensus size: 3
15697613 TCTTCTTTTG
15697623 TAT T-T TAT GTAT T-T TAT TATT TAT TAT TAT TAT TAT TAT GTA- TAT
1 TAT TAT TAT -TAT TAT TAT TA-T TAT TAT TAT TAT TAT TAT -TAT TAT
* * *
15697668 CT-T TATT TATT TAT T-T TTT TGT TAA TAT T-T ATAT GTAT T-T TATT
1 -TAT TA-T TA-T TAT TAT TAT TAT TAT TAT TAT -TAT -TAT TAT TA-T
* *
15697712 TAT ATAGT TCT ATATT TAT TAT ATAT TAT GATT TATT TAT TATT TATT
1 TAT -TA-T TAT -TA-T TAT TAT -TAT TAT TA-T TA-T TAT TA-T TA-T
15697760 TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT T
15697776 TTTTCTTGTA
Statistics
Matches: 120, Mismatches: 9, Indels: 42
0.70 0.05 0.25
Matches are distributed among these distances:
2 12 0.10
3 61 0.51
4 45 0.38
5 2 0.02
ACGTcount: A:0.28, C:0.01, G:0.04, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:15697677 original size:25 final size:26
Alignment explanation
Indices: 15697649--15697768 Score: 70
Period size: 28 Copynumber: 4.5 Consensus size: 26
15697639 TTATTTATTA
15697649 TTATTATTATTATG-TATATCTTTAT
1 TTATTATTATTATGATATATCTTTAT
* * *
15697674 TTATTTATTTTTTTGTTAATAT-TTATAT
1 TTA-TTATTATTATGAT-ATATCTT-TAT
* *
15697702 GTATT-TTATT-T-ATATAGTTCTATAT
1 TTATTATTATTATGATATA--TCTTTAT
* *
15697727 TTATTATATATTATGATTTATTTATTAT
1 TTATTAT-TATTATGATATATCT-TTAT
15697755 TTATTTATTATTAT
1 TTA-TTATTATTAT
15697769 TATTATTTTT
Statistics
Matches: 72, Mismatches: 10, Indels: 23
0.69 0.10 0.22
Matches are distributed among these distances:
23 3 0.04
24 1 0.01
25 12 0.17
26 15 0.21
27 11 0.15
28 22 0.31
29 8 0.11
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.66
Consensus pattern (26 bp):
TTATTATTATTATGATATATCTTTAT
Found at i:15697678 original size:4 final size:4
Alignment explanation
Indices: 15697669--15697763 Score: 50
Period size: 4 Copynumber: 22.5 Consensus size: 4
15697659 TATGTATATC
* * *
15697669 TTTA TTTA TTTA TTTT TTTG TTAATA TTTA TATGTA TTTTA TTTA TATA
1 TTTA TTTA TTTA TTTA TTTA TT--TA TTTA T-T-TA -TTTA TTTA TTTA
* * * *
15697718 GTTC TATA TTTA TTATA TATTA -TGA TTTA TTTA -TTA TTTA TTTA TT
1 TTTA TTTA TTTA TT-TA T-TTA TTTA TTTA TTTA TTTA TTTA TTTA TT
15697764 ATTATTATTA
Statistics
Matches: 69, Mismatches: 13, Indels: 18
0.69 0.13 0.18
Matches are distributed among these distances:
3 5 0.07
4 48 0.70
5 8 0.12
6 7 0.10
7 1 0.01
ACGTcount: A:0.27, C:0.01, G:0.04, T:0.67
Consensus pattern (4 bp):
TTTA
Found at i:15698823 original size:22 final size:21
Alignment explanation
Indices: 15698795--15698934 Score: 77
Period size: 22 Copynumber: 6.2 Consensus size: 21
15698785 CATTTCTTTG
15698795 TTTATTTGTTTATTTTATTTTA
1 TTTATTT-TTTATTTTATTTTA
* ** *
15698817 TTTATTTATTAGATTAGGTTTA
1 TTTATTTTTTATTTTA-TTTTA
15698839 TTTAATATTCTTTTTATCTTTATTTTA
1 -TT--TA-T-TTTTTAT-TTTATTTTA
* * *
15698866 TTTTTATTTTTGTTTTACTTTTC
1 TTTAT-TTTTTATTTTA-TTTTA
15698889 TTTATTTTTTATTTT-TATTTA
1 TTTATTTTTTATTTTAT-TTTA
* *
15698910 TTT-TTTTATTATTCTATTTTC
1 TTTATTTT-TTATTTTATTTTA
15698931 TTTA
1 TTTA
15698935 AATAAAAATC
Statistics
Matches: 89, Mismatches: 17, Indels: 24
0.68 0.13 0.18
Matches are distributed among these distances:
20 5 0.06
21 24 0.27
22 25 0.28
23 17 0.19
24 1 0.01
25 2 0.02
26 3 0.03
27 9 0.10
28 3 0.03
ACGTcount: A:0.19, C:0.04, G:0.04, T:0.74
Consensus pattern (21 bp):
TTTATTTTTTATTTTATTTTA
Found at i:15698871 original size:17 final size:17
Alignment explanation
Indices: 15698849--15698906 Score: 57
Period size: 17 Copynumber: 3.4 Consensus size: 17
15698839 TTTAATATTC
15698849 TTTTTATCTTTATTTTA
1 TTTTTATCTTTATTTTA
* *
15698866 TTTTTATTTTTGTTTTA
1 TTTTTATCTTTATTTTA
*
15698883 -CTTT-TCTTTATTTTTTA
1 TTTTTATCTTTA--TTTTA
15698900 TTTTTAT
1 TTTTTAT
15698907 TTATTTTTTT
Statistics
Matches: 31, Mismatches: 6, Indels: 6
0.72 0.14 0.14
Matches are distributed among these distances:
15 4 0.13
16 3 0.10
17 20 0.65
18 3 0.10
19 1 0.03
ACGTcount: A:0.14, C:0.05, G:0.02, T:0.79
Consensus pattern (17 bp):
TTTTTATCTTTATTTTA
Found at i:15698897 original size:28 final size:25
Alignment explanation
Indices: 15698861--15698929 Score: 52
Period size: 26 Copynumber: 2.6 Consensus size: 25
15698851 TTTATCTTTA
*
15698861 TTTTA-TTTTTATTTTTGTTTTACTTT
1 TTTTATTTTTTATTTTT-ATTTA-TTT
*
15698887 TCTT-TATTTTTTATTTTTATTTATTT
1 TTTTAT-TTT-TTATTTTTATTTATTT
*
15698913 TTTTATTATTCTATTTT
1 TTTTATT-TTTTATTTT
15698930 CTTTAAATAA
Statistics
Matches: 34, Mismatches: 4, Indels: 10
0.71 0.08 0.21
Matches are distributed among these distances:
26 16 0.47
27 10 0.29
28 8 0.24
ACGTcount: A:0.14, C:0.04, G:0.01, T:0.80
Consensus pattern (25 bp):
TTTTATTTTTTATTTTTATTTATTT
Found at i:15698909 original size:17 final size:17
Alignment explanation
Indices: 15698861--15698915 Score: 76
Period size: 17 Copynumber: 3.2 Consensus size: 17
15698851 TTTATCTTTA
15698861 TTTTATTTTTATTT-TT
1 TTTTATTTTTATTTATT
* *
15698877 GTTTTACTTTTCTTTATT
1 -TTTTATTTTTATTTATT
15698895 TTTTATTTTTATTTATT
1 TTTTATTTTTATTTATT
15698912 TTTT
1 TTTT
15698916 TATTATTCTA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
17 31 0.94
18 2 0.06
ACGTcount: A:0.13, C:0.04, G:0.02, T:0.82
Consensus pattern (17 bp):
TTTTATTTTTATTTATT
Found at i:15699042 original size:60 final size:57
Alignment explanation
Indices: 15698946--15699512 Score: 707
Period size: 55 Copynumber: 9.9 Consensus size: 57
15698936 ATAAAAATCA
15698946 AAATTTCCAAAAAAAAATAGTTTT-AGGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 AAATTT-C-AAAAAAAATA-TTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
* * *
15699006 CAAAATTTCAAAAAAAATACTTTTGAGGAAAAGTTGAAAGTATTAATTTTTCTTAAAAAT
1 --AAATTTCAAAAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
* * *
15699066 AAATTTC-CAAAAAATACTTTTGGGGAAAAGTTGAAAGTATCAATTTTTCTT-AGAAAT
1 AAATTTCAAAAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAAT
* *
15699123 AAATTTCCAAAAAAAAATATTTTTAAGGAAAAGTTGAAAGTATCAATTTTCCTTAAAAAT
1 AAATTT-C-AAAAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
* *
15699183 AAGTTTCAAAAAAAGGA-ATTTTTGAGGAAAAGTTGAAAGTATCAATTTCCCTT-AGAAAT
1 AAATTTCAAAAAAA--ATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGA-AAAT
*
15699242 AAATTTC--AAAAAATATTTTTAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 AAATTTCAAAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
15699297 AAATTTCAAAAAAAAT-TTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTG-AAAT
1 AAATTTCAAAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
*
15699351 AAATTTC--AAAAAATATTTTTAGGGAAAAGTTGAAAGTATCAATTTTCCTT-AAAAT
1 AAATTTCAAAAAAAATATTTTGA-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
15699406 AAATTTC-AAAAAAAT-TTTTG-GGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
1 AAATTTCAAAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
* *
15699460 CAAAGTTTCCAAAAAAAACATTTTTGGGGAAAAGTTGAAAGTATCAATTTTCC
1 -AAA-TTT-CAAAAAAAATA-TTTTGAGGAAAAGTTGAAAGTATCAATTTTCC
15699513 CTACACAAGA
Statistics
Matches: 457, Mismatches: 22, Indels: 53
0.86 0.04 0.10
Matches are distributed among these distances:
52 7 0.02
53 32 0.07
54 16 0.04
55 119 0.26
56 17 0.04
57 64 0.14
58 23 0.05
59 45 0.10
60 99 0.22
61 29 0.06
62 6 0.01
ACGTcount: A:0.45, C:0.08, G:0.13, T:0.34
Consensus pattern (57 bp):
AAATTTCAAAAAAAATATTTTGAGGAAAAGTTGAAAGTATCAATTTTCCTTGAAAAT
Found at i:15703433 original size:21 final size:19
Alignment explanation
Indices: 15703405--15703446 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
15703395 ACAATAGATG
15703405 AAAA-ATGA-GAAAAAAAA
1 AAAAGATGATGAAAAAAAA
*
15703422 AGAAGATGATGAAAAAAAA
1 AAAAGATGATGAAAAAAAA
15703441 AAAAGA
1 AAAAGA
15703447 AAGAAAGAAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
17 3 0.14
18 4 0.19
19 14 0.67
ACGTcount: A:0.76, C:0.00, G:0.17, T:0.07
Consensus pattern (19 bp):
AAAAGATGATGAAAAAAAA
Found at i:15703437 original size:19 final size:18
Alignment explanation
Indices: 15703405--15703471 Score: 61
Period size: 17 Copynumber: 3.9 Consensus size: 18
15703395 ACAATAGATG
15703405 AAAA-ATGAGAAAAAAAA
1 AAAAGATGAGAAAAAAAA
*
15703422 AGAAGATGATGAAAAAAAA
1 AAAAGATGA-GAAAAAAAA
* * *
15703441 AAAAGA-AAGAAAGAAGA
1 AAAAGATGAGAAAAAAAA
15703458 AAAA-ATGA-AAAAAA
1 AAAAGATGAGAAAAAA
15703472 TGAAAAAAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 7
0.74 0.13 0.13
Matches are distributed among these distances:
16 6 0.15
17 15 0.38
18 5 0.12
19 14 0.35
ACGTcount: A:0.78, C:0.00, G:0.16, T:0.06
Consensus pattern (18 bp):
AAAAGATGAGAAAAAAAA
Found at i:15703460 original size:22 final size:21
Alignment explanation
Indices: 15703414--15703462 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 21
15703404 GAAAAATGAG
*
15703414 AAAAAAAAAGAAGATGATGAAA
1 AAAAAAAAAGAAGA-GAAGAAA
*
15703436 AAAAAAAAAGAA-AGAAAGAAG
1 AAAAAAAAAGAAGAG-AAGAAA
15703457 AAAAAA
1 AAAAAA
15703463 TGAAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 1 0.04
21 11 0.46
22 12 0.50
ACGTcount: A:0.80, C:0.00, G:0.16, T:0.04
Consensus pattern (21 bp):
AAAAAAAAAGAAGAGAAGAAA
Done.